Citrus Sinensis ID: 038019
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 866 | 2.2.26 [Sep-21-2011] | |||||||
| C0LGH2 | 1032 | Probable LRR receptor-lik | yes | no | 0.766 | 0.643 | 0.496 | 0.0 | |
| C0LGH3 | 1033 | Probable LRR receptor-lik | no | no | 0.808 | 0.677 | 0.474 | 1e-179 | |
| C0LGG9 | 1035 | Probable LRR receptor-lik | no | no | 0.740 | 0.619 | 0.358 | 1e-109 | |
| C0LGG8 | 1038 | Probable LRR receptor-lik | no | no | 0.780 | 0.651 | 0.345 | 1e-106 | |
| C0LGE0 | 1014 | Probable LRR receptor-lik | no | no | 0.744 | 0.636 | 0.363 | 2e-96 | |
| C0LGG7 | 953 | Probable LRR receptor-lik | no | no | 0.639 | 0.581 | 0.354 | 1e-89 | |
| Q9ASQ6 | 1019 | Probable LRR receptor-lik | no | no | 0.705 | 0.599 | 0.361 | 6e-89 | |
| Q9FXF2 | 1021 | Probable LRR receptor-lik | no | no | 0.709 | 0.601 | 0.336 | 2e-87 | |
| C0LGN2 | 1020 | Probable leucine-rich rep | no | no | 0.735 | 0.624 | 0.332 | 4e-86 | |
| Q9FL28 | 1173 | LRR receptor-like serine/ | no | no | 0.307 | 0.226 | 0.369 | 2e-38 |
| >sp|C0LGH2|Y1561_ARATH Probable LRR receptor-like serine/threonine-protein kinase At1g56130 OS=Arabidopsis thaliana GN=At1g56130 PE=1 SV=2 | Back alignment and function desciption |
|---|
Score = 647 bits (1669), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 333/671 (49%), Positives = 445/671 (66%), Gaps = 7/671 (1%)
Query: 8 RALNSILQQWDAPAVPLWNISGNPCSGSALNATDSEFESPNNNPAIVCNCTFDNGATCHI 67
RALNSI W A WNISG CSG+A++A+ + +P NP I C+C+F N C I
Sbjct: 43 RALNSIFAAWKIQAPREWNISGELCSGAAIDASVLD-SNPAYNPLIKCDCSFQNSTICRI 101
Query: 68 TKLRVYGLNKKGVIPEELVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSG 127
T ++VY ++ G IP EL TL YLT L + QN TG LP IGNL+R+ +++F N SG
Sbjct: 102 TNIKVYAIDVVGPIPPELWTLTYLTNLNLGQNVLTGSLPPAIGNLTRMQWMTFGINALSG 161
Query: 128 PVPRELGNLKELTVLAFGTNNFSGALPPELGNLAKLEQLYIDSCGAGGEIPSTFAKLRNM 187
PVP+E+G L +L +L +NNFSG++P E+G KL+Q+YIDS G G IP +FA L +
Sbjct: 162 PVPKEIGLLTDLRLLGISSNNFSGSIPDEIGRCTKLQQMYIDSSGLSGRIPLSFANLVQL 221
Query: 188 QTLWASDNPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLESLQMSDIYNVS 247
+ W +D T +IPDFIG+WTKL +LR G GPIPSS S L SL L++ DI + S
Sbjct: 222 EQAWIADLEVTDQIPDFIGDWTKLTTLRIIGTGLSGPIPSSFSNLTSLTELRLGDISSGS 281
Query: 248 SSLDFVMSLKNLTDLSLRNALITGTIPFGIGELQMLQILDLSFNNLTGQIPATLFNIDSL 307
SSLDF+ +K+L+ L LRN +TGTIP IGE L+ +DLSFN L G IPA+LFN+ L
Sbjct: 282 SSLDFIKDMKSLSVLVLRNNNLTGTIPSTIGEHSSLRQVDLSFNKLHGPIPASLFNLSQL 341
Query: 308 EYLFLGNNSLSGTLPDQKSENLQKIDLSHNHLSGTFPLWVN-SELQMNLAVNNFKFDISN 366
+LFLGNN+L+G+ P QK+++L+ +D+S+N LSG+ P WV+ L++NL NNF + +
Sbjct: 342 THLFLGNNTLNGSFPTQKTQSLRNVDVSYNDLSGSLPSWVSLPSLKLNLVANNFTLEGLD 401
Query: 367 ISVFPGLNCLQRNFTCNRNAPQCKLPSLCCLHPEMRA-DNIVYEGDNSYLGASAFVVTNT 425
V PGLNCLQ+NF CNR S+ C PE R+ ++E ++ G ++F V+
Sbjct: 402 NRVLPGLNCLQKNFPCNRGKGIYSDFSINCGGPEKRSVTGALFEREDEDFGPASFFVSAG 461
Query: 426 EKWAVSKVGLFNGRENASYVLNTQDQVTGTRTPKLYQTSRISAGSLRYYGLGLVNGPYNV 485
++WA S VGLF G N Y+ +Q Q T +L+Q++R+SA S+RYYGLGL NG Y V
Sbjct: 462 QRWAASSVGLFAGSSNNIYIATSQSQFVNTLDSELFQSARLSASSVRYYGLGLENGGYTV 521
Query: 486 SLLFAETNFPDPSTERWESRGRRVFDIYVQGTLRWKDFDISKEAGGPN-RAIIKNFSATV 544
+L FAE ++ W+ GRR FDIYVQG L KDFD+ + AG RA+ + + A V
Sbjct: 522 TLQFAEIQILGSTSTTWKGLGRRRFDIYVQGRLVEKDFDVRRTAGDSTVRAVQRVYKANV 581
Query: 545 SENHLEIHLFWAGKGTCCIPKQGNYGPAISALSVVSAFKPSVSGLPPSTPGNKNHTGLIV 604
SENHLE+HLFWAGKGTCCIP QG YGP ISA+S F P+V+ PPS KN TG IV
Sbjct: 582 SENHLEVHLFWAGKGTCCIPIQGAYGPLISAVSATPDFTPTVANKPPSK--GKNRTGTIV 639
Query: 605 GIAVPLGILGLIVISIMFYLW-REKDNDDEEVLVGIGSKPNIFGYAELRSATKDFNRSNK 663
G+ V +G+L ++ +MF + R K D+E L+G+ KP IF Y+EL+SAT+DF+ SNK
Sbjct: 640 GVIVGVGLLSILAGVVMFTIRKRRKRYTDDEELLGMDVKPYIFTYSELKSATQDFDPSNK 699
Query: 664 LGEGGYGPVYK 674
LGEGG+GPVYK
Sbjct: 700 LGEGGFGPVYK 710
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Arabidopsis thaliana (taxid: 3702) EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1 |
| >sp|C0LGH3|Y5614_ARATH Probable LRR receptor-like serine/threonine-protein kinase At1g56140 OS=Arabidopsis thaliana GN=At1g56140 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 628 bits (1619), Expect = e-179, Method: Compositional matrix adjust.
Identities = 337/710 (47%), Positives = 458/710 (64%), Gaps = 10/710 (1%)
Query: 9 ALNSILQQWDAPAVPLWNISGNPCSGSALNATDSEFESPNNNPAIVCNCTFDNGATCHIT 68
ALNSI W A WNISG CSG+A++A+ + +P NP I C+C+F+N C IT
Sbjct: 43 ALNSIFAAWRIRAPREWNISGELCSGAAIDASVLD-SNPAYNPLIKCDCSFENSTICRIT 101
Query: 69 KLRVYGLNKKGVIPEELVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGP 128
++VY + G IP++L TL+YLT L + QN TG LP +GNL+R+ +++F N SGP
Sbjct: 102 NIKVYAMEVVGSIPQQLWTLEYLTNLNLGQNVLTGSLPPALGNLTRMRWMTFGINALSGP 161
Query: 129 VPRELGNLKELTVLAFGTNNFSGALPPELGNLAKLEQLYIDSCGAGGEIPSTFAKLRNMQ 188
+P+E+G L +L +L+ +NNFSG++P E+G KL+Q+YIDS G G +P +FA L ++
Sbjct: 162 IPKEIGLLTDLRLLSISSNNFSGSIPDEIGRCTKLQQIYIDSSGLSGGLPVSFANLVELE 221
Query: 189 TLWASDNPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLESLQMSDIYNVSS 248
W +D TG+IPDFIG+WTKL +LR G GPIP+S S L SL L++ DI N +S
Sbjct: 222 QAWIADMELTGQIPDFIGDWTKLTTLRILGTGLSGPIPASFSNLTSLTELRLGDISNGNS 281
Query: 249 SLDFVMSLKNLTDLSLRNALITGTIPFGIGELQMLQILDLSFNNLTGQIPATLFNIDSLE 308
SL+F+ +K+L+ L LRN +TGTIP IGE L+ LDLSFN L G IPA+LFN+ L
Sbjct: 282 SLEFIKDMKSLSILVLRNNNLTGTIPSNIGEYSSLRQLDLSFNKLHGTIPASLFNLRQLT 341
Query: 309 YLFLGNNSLSGTLPDQKSENLQKIDLSHNHLSGTFPLWVN-SELQMNLAVNNFKFDISNI 367
+LFLGNN+L+G+LP QK ++L +D+S+N LSG+ P WV+ L +NL NNF + +
Sbjct: 342 HLFLGNNTLNGSLPTQKGQSLSNVDVSYNDLSGSLPSWVSLPNLNLNLVANNFTLEGLDN 401
Query: 368 SVFPGLNCLQRNFTCNRNAPQCKLPSLCCLHPEMRA-DNIVYEGDNSYLGASAFVVTNTE 426
V GLNCLQ+NF CNR S+ C PE+R+ V+E ++ LG ++FVV+ +
Sbjct: 402 RVLSGLNCLQKNFPCNRGKGIYSDFSINCGGPEIRSVTEAVFEREDEDLGPASFVVSAGQ 461
Query: 427 KWAVSKVGLFNGRENASYVLNTQDQVTGTRTPKLYQTSRISAGSLRYYGLGLVNGPYNVS 486
+WA S VGLF G N Y+ +Q Q T +L+Q++R+SA SLRYYGLGL NG Y V+
Sbjct: 462 RWAASSVGLFAGSSNNIYISTSQSQFVNTLDSELFQSARLSASSLRYYGLGLENGGYTVT 521
Query: 487 LLFAETNFPDPSTERWESRGRRVFDIYVQGTLRWKDFDISKEAGGPN-RAIIKNFSATVS 545
L FAE ++ W GRR FDIYVQG L KDFD+ + AG RA+ + + A VS
Sbjct: 522 LQFAEIQILGSTSNTWRGLGRRRFDIYVQGRLVEKDFDVRRTAGDSTVRAVQREYKANVS 581
Query: 546 ENHLEIHLFWAGKGTCCIPKQGNYGPAISALSVVSAFKPSVSGLPPSTPGNKNHTGLIVG 605
+NHLEIHLFWAGKGTCCIP QG YGP ISA+ F P+V PPS K+ TG IVG
Sbjct: 582 QNHLEIHLFWAGKGTCCIPIQGAYGPLISAVGATPDFTPTVGNRPPSK--GKSMTGTIVG 639
Query: 606 IAVPLGILGLIVISIMFYL--WREKDNDDEEVLVGIGSKPNIFGYAELRSATKDFNRSNK 663
+ V +G+L +I ++F + R++ DDEE+L + KP F Y+EL+SAT+DF+ SNK
Sbjct: 640 VIVGVGLLSIISGVVIFIIRKRRKRYTDDEEIL-SMDVKPYTFTYSELKSATQDFDPSNK 698
Query: 664 LGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGR 713
LGEGG+GPVYK N +A + G K F +VA+ + R
Sbjct: 699 LGEGGFGPVYKGKLNDGREVAVKLLSVGSRQGKGQ-FVAEIVAISAVQHR 747
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Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|C0LGG9|Y5344_ARATH Probable LRR receptor-like serine/threonine-protein kinase At1g53440 OS=Arabidopsis thaliana GN=At1g53440 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 397 bits (1020), Expect = e-109, Method: Compositional matrix adjust.
Identities = 243/677 (35%), Positives = 374/677 (55%), Gaps = 36/677 (5%)
Query: 7 VRALNSILQQWDAPAVPLWNISGNPCSGSALN-ATDSEFESPNNNPAIVCNCTFDNGATC 65
V+ L +I ++ V NI C N +S + P +N I C+CTF+ + C
Sbjct: 34 VQTLRTIFRKLQNQTV---NIERTSCLDRKWNFVAESTSKLPTSN--ITCDCTFNASSVC 88
Query: 66 HITKLRVYGLNKKGVIPEELVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDF 125
+T +++ G N +G+IP E L LT + + NF +G +P+ + + L L+ + N
Sbjct: 89 RVTNIQLRGFNLRGIIPPEFGNLTRLTEIDLVLNFLSGTIPTTLSQIP-LEILAVTGNRL 147
Query: 126 SGPVPRELGNLKELTVLAFGTNNFSGALPPELGNLAKLEQLYIDSCGAGGEIPSTFAKLR 185
SGP P +LG + LT + +N F+G LPP LGNL L++L I S G IP + + L+
Sbjct: 148 SGPFPPQLGQITTLTDVIMESNLFTGQLPPNLGNLRSLKRLLISSNNITGRIPESLSNLK 207
Query: 186 NMQTLWASDNPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLESLQMSDIYN 245
N+ N +GKIPDFIGNWT+L L QG S +GPIP+S+S L +L L+++D+
Sbjct: 208 NLTNFRIDGNSLSGKIPDFIGNWTRLVRLDLQGTSMEGPIPASISNLKNLTELRITDLRG 267
Query: 246 VSSSLDFVMSLKNLTDLSLRNALITGTIPFGIG-ELQMLQILDLSFNNLTGQIPATLFNI 304
+S + ++ N+ L LRN LI IP IG + ML++LDLS N L G IP T ++
Sbjct: 268 PTSPFPDLQNMTNMERLVLRNCLIREPIPEYIGTSMTMLKLLDLSSNMLNGTIPDTFRSL 327
Query: 305 DSLEYLFLGNNSLSGTLPDQKSENLQKIDLSHNHLSGTFPLWVNSELQMNLAVNNFKFDI 364
++ +++L NNSL+G +P ++ Q IDLS+N+ + L N + D+
Sbjct: 328 NAFNFMYLNNNSLTGPVPQFILDSKQNIDLSYNNFTQPPTLSCN------------QLDV 375
Query: 365 SNISVFPGLN------CLQRNFTCNRNAPQCKLPSLCCLHPEMRADNIVYEGDNSYLGAS 418
+ IS +P + CL+++ C +A L + C ++ D Y D + GAS
Sbjct: 376 NLISSYPSVTNNSVQWCLRKDLPCPGDAHHSSL-FINCGGNRLKVDKDEYADDLNKRGAS 434
Query: 419 AFVVTNTEKWAVSKVGLFNGRENASYVLNTQDQVTGTRTPKLYQTSRISAGSLRYYGLGL 478
F +E+W S G + G + A+Y+ + TP+ Y+T+R+++ SL+YYGL +
Sbjct: 435 TFSSV-SERWGYSSSGAWLGNDGATYLATDTFNLINESTPEYYKTARLASQSLKYYGLCM 493
Query: 479 VNGPYNVSLLFAETNFPDPSTERWESRGRRVFDIYVQGTLRWKDFDISKEAGGPNRAIIK 538
G Y V L FAE F + T + S GRR+FDIYVQG L +DF+I++ AGG + ++
Sbjct: 494 RRGSYKVQLYFAEIMFSNDQT--YSSLGRRLFDIYVQGILLERDFNIAQRAGGVGKPFLR 551
Query: 539 NF-SATVSENHLEIHLFWAGKGTCCIPKQGNYGPAISALSVVSAFKPSVSGLPPSTPGNK 597
V+ + LEIHL W GKGT IP +G YGP ISA++V FK +G P S N
Sbjct: 552 QVDEVQVNGSTLEIHLKWTGKGTNVIPTRGVYGPLISAITVTPNFKVD-TGKPLS---NG 607
Query: 598 NHTGLIVGIAVPLGILGLIVISIMFYLWREKDNDDEEVLVGIGSKPNIFGYAELRSATKD 657
G+++ V G+L L+++ + YL K+ D+ E L G+ + F +++ AT +
Sbjct: 608 VVAGIVIAACVAFGLLVLVILRLTGYLG-GKEVDENEELRGLDLQTGSFTLKQIKRATNN 666
Query: 658 FNRSNKLGEGGYGPVYK 674
F+ NK+GEGG+GPVYK
Sbjct: 667 FDPENKIGEGGFGPVYK 683
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|C0LGG8|Y5343_ARATH Probable LRR receptor-like serine/threonine-protein kinase At1g53430 OS=Arabidopsis thaliana GN=At1g53430 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 387 bits (994), Expect = e-106, Method: Compositional matrix adjust.
Identities = 246/713 (34%), Positives = 379/713 (53%), Gaps = 37/713 (5%)
Query: 4 KHAVRALNSILQQWDAPAVPLWNISGNPCSGSALN-ATDSEFESPNNNPAIVCNCTFDNG 62
+ V+ L +I ++ V NI CS N +S SP +N I C+CTF+
Sbjct: 33 EDEVQTLRTIFRKLQNQTV---NIERTSCSDQNWNFVVESASNSPTSN--ITCDCTFNAS 87
Query: 63 ATCHITKLRVYGLNKKGVIPEELVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSH 122
+ C +T +++ + G+ P E L L + + +NF G +P+ + + L LS
Sbjct: 88 SVCRVTNIQLKSFSLPGIFPPEFGNLTRLREIDLSRNFLNGTIPTTLSQIP-LEILSVIG 146
Query: 123 NDFSGPVPRELGNLKELTVLAFGTNNFSGALPPELGNLAKLEQLYIDSCGAGGEIPSTFA 182
N SGP P +LG++ LT + TN F+G LP LGNL L++L + + G+IP + +
Sbjct: 147 NRLSGPFPPQLGDITTLTDVNLETNLFTGPLPRNLGNLRSLKELLLSANNFTGQIPESLS 206
Query: 183 KLRNMQTLWASDNPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLESLQMSD 242
L+N+ N +GKIPDFIGNWT L+ L QG S +GPIP S+S L +L L+++D
Sbjct: 207 NLKNLTEFRIDGNSLSGKIPDFIGNWTLLERLDLQGTSMEGPIPPSISNLTNLTELRITD 266
Query: 243 IYNVSS-SLDFVMSLKNLTDLSLRNALITGTIPFGIGELQMLQILDLSFNNLTGQIPATL 301
+ ++ S + +L + L LRN LI G IP IG + L+ LDLS N LTG IP T
Sbjct: 267 LRGQAAFSFPDLRNLMKMKRLVLRNCLIRGPIPEYIGSMSELKTLDLSSNMLTGVIPDTF 326
Query: 302 FNIDSLEYLFLGNNSLSGTLPDQKSENLQKIDLSHNHLSGTFPLWVNSELQMNLAVNNFK 361
N+D+ ++FL NNSL+G +P + + +DLS N+ + L N +
Sbjct: 327 RNLDAFNFMFLNNNSLTGPVPQFIINSKENLDLSDNNFTQPPTLSCN------------Q 374
Query: 362 FDISNISVFPGLN------CLQRNFTCNRNAPQCKLPSLCCLHPEMRADNIVYEGDNSYL 415
D++ IS +P + CL+ C +A Q L + C ++ Y D +
Sbjct: 375 LDVNLISSYPSVTDNSVQWCLREGLPCPEDAKQSSL-FINCGGSRLKIGKDTYTDDLNSR 433
Query: 416 GASAFVVTNTEKWAVSKVGLFNGRENASYVLNTQDQVTGTRTPKLYQTSRISAGSLRYYG 475
G S F +E+W S G++ G+E+A Y+ + + TP+ Y+T+R+S SL+YYG
Sbjct: 434 GQSTFSSV-SERWGYSSSGVWLGKEDAGYLATDRFNLINGSTPEYYKTARLSPQSLKYYG 492
Query: 476 LGLVNGPYNVSLLFAETNFPDPSTERWESRGRRVFDIYVQGTLRWKDFDISKEAGGPNRA 535
L L G Y + L FAE F + T + S GRR+FDIYVQG L +DF+I++ AGG +
Sbjct: 493 LCLRRGSYKLQLHFAEIMFSNDQT--FNSLGRRIFDIYVQGNLLERDFNIAERAGGVGKP 550
Query: 536 IIKNFSAT-VSENHLEIHLFWAGKGTCCIPKQGNYGPAISALSVVSAFKPSVSGLPPSTP 594
I+ V+ + LEIHL W GKGT IP +G YGP ISA+++ FK +G P S
Sbjct: 551 FIRQIDGVQVNGSTLEIHLQWTGKGTNVIPTRGVYGPLISAITITPNFKVD-TGKPLS-- 607
Query: 595 GNKNHTGLIVGIAVPLGILGLIVISIMFYLWREKDNDDEEVLVGIGSKPNIFGYAELRSA 654
N G+++ G+L L+++ + YL K+ D+ E L G+ + F +++ A
Sbjct: 608 -NGAVAGIVIAACAVFGLLVLVILRLTGYLG-GKEVDENEELRGLDLQTGSFTLKQIKRA 665
Query: 655 TKDFNRSNKLGEGGYGPVYK-VTANSYGYLAPEYAMRGHLTEKADVFSFGVVA 706
T +F+ NK+GEGG+GPVYK V A+ + + + + V G+++
Sbjct: 666 TNNFDPENKIGEGGFGPVYKGVLADGMTIAVKQLSSKSKQGNREFVTEIGMIS 718
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|C0LGE0|Y1765_ARATH Probable LRR receptor-like serine/threonine-protein kinase At1g07650 OS=Arabidopsis thaliana GN=At1g07650 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 354 bits (908), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 248/683 (36%), Positives = 370/683 (54%), Gaps = 38/683 (5%)
Query: 7 VRALNSILQQWDAPAVPLWNISGNPCSGSAL----NATDSEFESPNNNPAIVCNCTF-DN 61
VRAL I ++ W+ + +PCSG T FES I C+C+F
Sbjct: 35 VRALKEIGKKLGKKD---WDFNKDPCSGEGTWIVTTYTTKGFES-----NITCDCSFLPQ 86
Query: 62 GATCHITKLRVYGLNKKGVIPEELVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFS 121
++CH+ ++ + N G++P E L++L VL + +N TG +P ++ RL LSF
Sbjct: 87 NSSCHVIRIALKSQNLTGIVPPEFSKLRHLKVLDLSRNSLTGSIPKEWASM-RLEDLSFM 145
Query: 122 HNDFSGPVPRELGNLKELTVLAFGTNNFSGALPPELGNLAKLEQLYIDSCGAGGEIPSTF 181
N SGP P+ L L L L+ N FSG +PP++G L LE+L++ S G +
Sbjct: 146 GNRLSGPFPKVLTRLTMLRNLSLEGNQFSGPIPPDIGQLVHLEKLHLPSNAFTGPLTEKL 205
Query: 182 AKLRNMQTLWASDNPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLESLQMS 241
L+N+ + SDN FTG IPDFI NWT++ L+ G GPIPSS+S L SL L++S
Sbjct: 206 GLLKNLTDMRISDNNFTGPIPDFISNWTRILKLQMHGCGLDGPIPSSISSLTSLTDLRIS 265
Query: 242 DIYNVSSSLDFVMSLKNLTDLSLRNALITGTIPFGIGELQMLQILDLSFNNLTGQIPATL 301
D+ SS + +L+++ L LR I G IP IG+L+ L+ LDLSFN L+G+IP++
Sbjct: 266 DLGGKPSSFPPLKNLESIKTLILRKCKIIGPIPKYIGDLKKLKTLDLSFNLLSGEIPSSF 325
Query: 302 FNIDSLEYLFLGNNSLSGTLPDQKSENLQKIDLSHNHLS--GTFPLWVNSELQMNLAVNN 359
N+ ++++L N L+G +P+ E + +D+S N+ + + P + + NL +
Sbjct: 326 ENMKKADFIYLTGNKLTGGVPNYFVERNKNVDVSFNNFTDESSIPSHDCNRVTSNLVES- 384
Query: 360 FKFDISNISVFPGLNCLQRNFTCNRNAPQCKLPSLC--CLHPEMRADN-IVYEGDNSYLG 416
F + N S G C + C + + L L C E++ D I Y+ D+ G
Sbjct: 385 --FALGNKS-HKGSTCFLQRMPC-VHPKRYHLYKLYINCGGGEVKVDKEITYQADDEPKG 440
Query: 417 ASAFVVTNTEKWAVSKVGLF--NGRENASY-VLNTQDQVTGTRTPK--LYQTSRISAGSL 471
AS +V+ ++WA+S G F N + Y V NT +P LY+T+R+S SL
Sbjct: 441 ASMYVLGANKRWALSSTGNFMDNDDDADEYTVQNTSRLSVNASSPSFGLYRTARVSPLSL 500
Query: 472 RYYGLGLVNGPYNVSLLFAETNFPDPSTERWESRGRRVFDIYVQGTLRWKDFDISKEAGG 531
YYG+ L NG Y V+L FAE F D +T S G+R+FDIYVQ L K+F+I + A G
Sbjct: 501 TYYGICLGNGNYTVNLHFAEIIFTDDNT--LYSLGKRLFDIYVQDQLVIKNFNIQEAARG 558
Query: 532 PNRAIIKNFSATVSENHLEIHLFWAGKGTCCIPKQGNYGPAISALSVVSAFKPSVSGLPP 591
+ IIK+F V+++ L+I L WAGKGT IP +G YGP ISA+SV FKP V
Sbjct: 559 SGKPIIKSFLVNVTDHTLKIGLRWAGKGTTGIPIRGVYGPMISAISVEPNFKPPVY---- 614
Query: 592 STPGNKNHTGLIVGIAVPLGILGLIVISIMFYLWREKDNDDEEVLVGIGSKPNIFGYAEL 651
+ L VG+ V L L +I +F+ R ND ++ L G+ + F ++
Sbjct: 615 ---YDTKDIILKVGVPVAAATLLLFIIVGVFWKKRRDKNDIDKELRGLDLQTGTFTLRQI 671
Query: 652 RSATKDFNRSNKLGEGGYGPVYK 674
++AT +F+ + K+GEGG+G VYK
Sbjct: 672 KAATDNFDVTRKIGEGGFGSVYK 694
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|C0LGG7|Y1534_ARATH Probable LRR receptor-like serine/threonine-protein kinase At1g53420 OS=Arabidopsis thaliana GN=At1g53420 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 332 bits (850), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 217/612 (35%), Positives = 313/612 (51%), Gaps = 58/612 (9%)
Query: 76 NKKGVIPEELVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRELGN 135
N +G +P+ELV L L + + +N+ G +P G L L+ + N +GP+P+E GN
Sbjct: 74 NLQGSLPKELVGLPLLQEIDLSRNYLNGSIPPEWGVLP-LVNIWLLGNRLTGPIPKEFGN 132
Query: 136 LKELTVLAFGTNNFSGALPPELGNLAKLEQLYIDSCGAGGEIPSTFAKLRNMQTLWASDN 195
+ LT L N SG LP ELGNL ++Q+ + S GEIPSTFAKL ++ SDN
Sbjct: 133 ITTLTSLVLEANQLSGELPLELGNLPNIQQMILSSNNFNGEIPSTFAKLTTLRDFRVSDN 192
Query: 196 PFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLESLQMSDIYNVSSSLDFVMS 255
+G IPDFI WTKL+ L Q + GPIP +++ L L+ L++SD+ S + +
Sbjct: 193 QLSGTIPDFIQKWTKLERLFIQASGLVGPIPIAIASLVELKDLRISDLNGPESPFPQLRN 252
Query: 256 LKNLTDLSLRNALITGTIPFGIGELQMLQILDLSFNNLTGQIPATLFNIDSLEYLFLGNN 315
+K + L LRN +TG +P +G++ + LDLSFN L+G IP T N+ Y++ N
Sbjct: 253 IKKMETLILRNCNLTGDLPDYLGKITSFKFLDLSFNKLSGAIPNTYINLRDGGYIYFTGN 312
Query: 316 SLSGTLPDQKSENLQKIDLSHNHLSGTFPLWVNSELQMNLAVNNFKFDISN-ISVFPGLN 374
L+G++PD KIDLS+ NNF D +N + + +
Sbjct: 313 MLNGSVPDWMVNKGYKIDLSY---------------------NNFSVDPTNAVCKYNNVL 351
Query: 375 CLQRNFTCNRNAPQCKLPSLCCLHPEMRADNIVYEGDNSYLGASAFVVTNTEKWAVSKVG 434
RN+ C + + C EM + +YE D S + N W + VG
Sbjct: 352 SCMRNYQCPKTFNALHIN---CGGDEMSINGTIYESDKYDRLESWYESRNG--WFSNNVG 406
Query: 435 LFNGRENASYVLNTQDQVTGTRTPK--LYQTSRISAGSLRYYGLGLVNGPYNVSLLFAET 492
+F ++ + + + LY +RISA SL YY L L NG YNV+L FAE
Sbjct: 407 VFVDDKHVPERVTIESNSSELNVVDFGLYTQARISAISLTYYALCLENGNYNVNLHFAEI 466
Query: 493 NFPDPSTERWESRGRRVFDIYVQGTLRWKDFDISKEAGGPNRAIIKNFSATVSENHLEIH 552
F ++S GRR FDIY+Q L KDF+I+KEA +IK F + + LEI
Sbjct: 467 MF--NGNNNYQSLGRRFFDIYIQRKLEVKDFNIAKEAKDVGNVVIKTFPVEIKDGKLEIR 524
Query: 553 LFWAGKGTCCIPKQGNYGPAISALSVVSAFKPSVSGLPPSTPGNKNHTGLIVGIAVPLGI 612
L+WAG+GT IPK+ YGP ISA+SV S+ PS P N TG + + V L I
Sbjct: 525 LYWAGRGTTVIPKERVYGPLISAISVDSSVNPS--------PRNGMSTGTLHTLVVILSI 576
Query: 613 LGLIVISIMFYLWR----------EKDNDDEEVLVGIGSKPNIFGYAELRSATKDFNRSN 662
IV + LW+ EKD E+++ F +++ AT +F+ +N
Sbjct: 577 --FIVFLVFGTLWKKGYLRSKSQMEKDFKSLELMIA------SFSLRQIKIATNNFDSAN 628
Query: 663 KLGEGGYGPVYK 674
++GEGG+GPVYK
Sbjct: 629 RIGEGGFGPVYK 640
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q9ASQ6|Y1972_ARATH Probable LRR receptor-like serine/threonine-protein kinase At1g29720 OS=Arabidopsis thaliana GN=RFK1 PE=2 SV=3 | Back alignment and function description |
|---|
Score = 329 bits (843), Expect = 6e-89, Method: Compositional matrix adjust.
Identities = 241/667 (36%), Positives = 352/667 (52%), Gaps = 56/667 (8%)
Query: 30 NPCSGSALNATDSEFESPN--NNPAIVCNCTFDNGATCHITKLRVYGLNKKGVIPEELVT 87
+PCS L PN N I C+C+F+N C IT+L + ++ +G +P EL
Sbjct: 57 DPCSSKTLKIIQEVDFVPNLDINNTIGCDCSFNNNTICRITELALKTMSLRGKLPPELTK 116
Query: 88 LQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKELTVLAFGTN 147
L YL +++ +N+ +G +P ++ L +S N+ SG +P L N K LT L N
Sbjct: 117 LPYLKSIELCRNYLSGTIPMEWAKMAYLTSISVCANNLSGNLPAGLQNFKNLTFLGVEGN 176
Query: 148 NFSGALPPELGNLAKLEQLYIDSCGAGGEIPSTFAKLRNMQTLWASDNPFTGKIPDFIGN 207
FSG +P ELGNL L L + S G +P T A+L N++ + DN FTG IP +IGN
Sbjct: 177 QFSGPIPDELGNLTSLTGLELASNKFTGILPGTLARLVNLERVRICDNNFTGIIPAYIGN 236
Query: 208 WTKLKSLRFQGNSFQGPIPSSLSKLASLESLQMSDIYNVSSSLDFVMSLKNLTDLSLRNA 267
WT+L+ L + GPIP ++ +L +L L +SD + S + +S K L L LRN
Sbjct: 237 WTRLQKLHLYASGLTGPIPDAVVRLENLLELSLSDTTGIKSFPN--LSSKGLKRLILRNV 294
Query: 268 LITGTIPFGIGELQMLQILDLSFNNLTGQIPATLFNIDSLEYLFLGNNSLSGTLPDQKSE 327
++G IP I L L+ILDLSFN L G + + + ++L N LSG +
Sbjct: 295 GLSGPIPSYIWNLTDLKILDLSFNKLNGIVQGVQ---NPPKNIYLTGNLLSGNIESGGLL 351
Query: 328 NLQK-IDLSHNHLSGTFPLWVNSELQMNLAVNNFKFDISNISVFPGLNCLQRNFTCNRNA 386
N Q IDLS+N+ S W +S Q +N ++ S + N T
Sbjct: 352 NSQSYIDLSYNNFS-----W-SSSCQKGSTINTYQSSYS-----------KNNLT---GL 391
Query: 387 PQCKLPSLC----------CLHPEMRADN----IVYEGDNSYLGASAFVVTNTEKWAVSK 432
P C +P+ C C E+ N I Y+ DNS +A + W VS
Sbjct: 392 PPCAVPANCKKYQRFLHINCGGEEVSIRNSLGKITYQTDNSR-QTNAASNQQFDYWGVSN 450
Query: 433 VGLF--NGRENASYVLNTQDQVTGTRTPKLYQTSRISAGSLRYYGLGLVNGPYNVSLLFA 490
G F + ++ Y +T ++G P LY+T+R SA SL YY L NG YNV L F
Sbjct: 451 TGDFTDDNSDHDEYYTSTNLTLSGDY-PDLYKTARRSALSLVYYAFCLENGNYNVKLHFM 509
Query: 491 ETNFPDPSTERWESRGRRVFDIYVQGTLRWKDFDISKEAGGPNRAIIKNFSATVSENHLE 550
E F D E + GRR+FD+YVQG L +DF+I+KEA G + +IK +ATV+ + LE
Sbjct: 510 EIQFSDK--EVYSRLGRRIFDVYVQGKLFLRDFNINKEANGNMKPVIKEINATVTNHMLE 567
Query: 551 IHLFWAGKGTCCIPKQGNYGPAISALSVVSAFKPSVSGLPPSTPGNKNHTG--LIVGIAV 608
I L+WAGKGT IPK+GNYGP ISA+S+ + +P + G+ + K+H LI+G +
Sbjct: 568 IRLYWAGKGTTLIPKRGNYGPLISAISLCHSQEP-LCGVEKT----KHHIKYPLILGASG 622
Query: 609 PLGILGLIVISIMFY-LWREKDNDDEEVLVGIGSKPNIFGYAELRSATKDFNRSNKLGEG 667
L + L+ + I ++R +N E L G + F + +L++AT +F+++NKLGEG
Sbjct: 623 ALVTIVLLAVGIYARGIYRRDNNRRERDLRAQGLQTVCFSWRQLQTATNNFDQANKLGEG 682
Query: 668 GYGPVYK 674
G+G V+K
Sbjct: 683 GFGSVFK 689
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q9FXF2|RKF1_ARATH Probable LRR receptor-like serine/threonine-protein kinase RFK1 OS=Arabidopsis thaliana GN=RKF1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 324 bits (830), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 227/674 (33%), Positives = 334/674 (49%), Gaps = 60/674 (8%)
Query: 24 LWNISGNPCSGSALNATDSEFESPNNNPAIVCNCTFDNGATCHITKLRVYGLNKKGVIPE 83
W C + T++ P I C C+ N CH+ K N G +P+
Sbjct: 61 FWKFDAENCKIEMVGLTETP--PPTAKQEIECECSPTNDTDCHVVKFAFKDHNLPGTLPQ 118
Query: 84 ELVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKELTVLA 143
+V L YL + + N+ G LP + S L F+S N SG +P+E GN LT L
Sbjct: 119 -IVKLPYLREIDLAYNYINGTLPREWAS-SNLTFISLLVNRLSGEIPKEFGN-SSLTYLD 175
Query: 144 FGTNNFSGALPPELGNLAKLEQLYIDSCGAGGEIPSTFAKLRNMQTLWASDNPFTGKIPD 203
+N FSG +P ELGNL L++L + S G +P++ A+L+NM +D +G IP
Sbjct: 176 LESNAFSGTIPQELGNLVHLKKLLLSSNKLTGTLPASLARLQNMTDFRINDLQLSGTIPS 235
Query: 204 FIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLESLQMSDIYNVSSSLDFVMSLKNLTDLS 263
+I NW +L+ L + GPIPS +S L++L +L++SDI + ++ LT +
Sbjct: 236 YIQNWKQLERLEMIASGLTGPIPSVISVLSNLVNLRISDIRGPVQPFPSLKNVTGLTKII 295
Query: 264 LRNALITGTIPFGIGELQMLQILDLSFNNLTGQIPATLFNIDSLEYLFLGNNSLSGTLPD 323
L+N I+G IP + L+ L+ LDLSFN L G IP + ++L ++ L N L G PD
Sbjct: 296 LKNCNISGQIPTYLSHLKELETLDLSFNKLVGGIP-SFAQAENLRFIILAGNMLEGDAPD 354
Query: 324 QKSENLQKIDLSHNHLSGTFPLWVNSELQMNLAVNNFKFDISNISVFPGLNCLQRNFTCN 383
+ + +DLS+N+L P MNL +N F+ S L C+ ++F C
Sbjct: 355 ELLRDGITVDLSYNNLKWQSPESRACRPNMNLNLNLFQ-STSTKKSSKFLPCI-KDFKCP 412
Query: 384 RNAPQCKLPSLCCLHPEMRADNI---------VYEGD-NSYLGASAFVVTNTEKWAVSKV 433
R + CLH ++ +YEGD N GA+ + + W S
Sbjct: 413 RYSS--------CLHVNCGGSDMYVKEKKTKELYEGDGNVEGGAAKYFLKPDANWGFSST 464
Query: 434 GLF---NGRENASYVLNTQDQVTGTRTPKLYQTSRISAGSLRYYGLGLVNGPYNVSLLFA 490
G F N +N + + V + LY+++RI+ SL Y+ L NG Y ++L FA
Sbjct: 465 GDFMDDNNFQNTRFTMF----VPASNQSDLYKSARIAPVSLTYFHACLENGNYTINLDFA 520
Query: 491 ETNFPDPSTERWESRGRRVFDIYVQGTLRWKDFDISKEAGGPNRAIIKNFSATVSENHLE 550
E F + E + GRR+FDIY+Q L KDF+I EA G IIK +A V+ + L
Sbjct: 521 EIRFTN--DENYNRLGRRLFDIYIQEKLVAKDFNIMDEAKGAQTPIIKPLTAYVTNHFLT 578
Query: 551 IHLFWAGKGTCCIPKQGNYGPAISALSVVSAFKPSVSGLPPSTPGNKNHTGLIVGIAVPL 610
I L WAGKGT IP +G YGP ISA+S+VS KP +PG + +GI P
Sbjct: 579 IRLSWAGKGTTRIPTRGVYGPIISAISIVSDSKPCERPKTGMSPG----AYIAIGIGAP- 633
Query: 611 GILGLIVISIMFYLW----------REKDNDDEEVLVGIGSKPNIFGYAELRSATKDFNR 660
++I I+ +LW + KD +EE+ G F +++ AT DFN
Sbjct: 634 ----CLIIFILGFLWICGCLPRCGRQRKDPYEEELPSG------TFTLRQIKFATDDFNP 683
Query: 661 SNKLGEGGYGPVYK 674
+NK+GEGG+G V+K
Sbjct: 684 TNKIGEGGFGAVFK 697
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|C0LGN2|Y3148_ARATH Probable leucine-rich repeat receptor-like serine/threonine-protein kinase At3g14840 OS=Arabidopsis thaliana GN=LRR-RLK PE=1 SV=1 | Back alignment and function description |
|---|
Score = 320 bits (819), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 230/692 (33%), Positives = 355/692 (51%), Gaps = 55/692 (7%)
Query: 4 KHAVRALNSILQQWDAPAVPLWNISGNPCSGSALNATDSEFESPNN----NPAIVCNCTF 59
K V AL S+ A WN S +PC + ++ + +PN A+ CNC+
Sbjct: 31 KEEVDALQSVAT---ALKKSNWNFSVDPCDETL---SEGGWRNPNAAKGFEDAVTCNCS- 83
Query: 60 DNGATCHITKLRVYGLNKKGVIPEELVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLS 119
CH+T + + + +G +P +L L +L L + +N+ G +P G S L+ +S
Sbjct: 84 --SVICHVTNIVLKAQDLQGSLPTDLSGLPFLQELDLTRNYLNGSIPPEWG-ASSLLNIS 140
Query: 120 FSHNDFSGPVPRELGNLKELTVLAFGTNNFSGALPPELGNLAKLEQLYIDSCGAGGEIPS 179
N SG +P+ELGNL L+ L N SG +PPELGNL L++L + S GEIPS
Sbjct: 141 LLGNRISGSIPKELGNLTTLSGLVLEYNQLSGKIPPELGNLPNLKRLLLSSNNLSGEIPS 200
Query: 180 TFAKLRNMQTLWASDNPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLESLQ 239
TFAKL + L SDN FTG IPDFI NW L+ L Q + GPIPS++ L +L L+
Sbjct: 201 TFAKLTTLTDLRISDNQFTGAIPDFIQNWKGLEKLVIQASGLVGPIPSAIGLLGTLTDLR 260
Query: 240 MSDIYNVSSSLDFVMSLKNLTDLSLRNALITGTIPFGIGELQMLQILDLSFNNLTGQIPA 299
++D+ S + ++ ++ L LRN +TG +P +G+ + L+ LDLSFN L+G IPA
Sbjct: 261 ITDLSGPESPFPPLRNMTSMKYLILRNCNLTGDLPAYLGQNRKLKNLDLSFNKLSGPIPA 320
Query: 300 TLFNIDSLEYLFLGNNSLSGTLPDQKSENLQKIDLSHNHLSGTFPLWVNSELQMNLAVNN 359
T + +++++ +N L+G +P + ID+++N+ S +E +VN
Sbjct: 321 TYSGLSDVDFIYFTSNMLNGQVPSWMVDQGDTIDITYNNFSKD-----KTEECQQKSVNT 375
Query: 360 FKF-------DISNISVFPGLNCLQRNFTCNRNAPQCKLPSLCCLHPEMRADNIVYEGDN 412
F + SN+S C + + + N ++ S E + D ++
Sbjct: 376 FSSTSPLVANNSSNVSCLSKYTCPKTFYGLHINCGGNEITS-----NETKYDADTWDTPG 430
Query: 413 SYLGASAFVVTNTEKWAVSKVGLFNGREN---ASYVLNTQDQVTGTRTP-KLYQTSRISA 468
Y + +V +NT + L + R N + + +++ ++T + +LY +R+SA
Sbjct: 431 YYDSKNGWVSSNTGNF------LDDDRTNNGKSKWSNSSELKITNSSIDFRLYTQARLSA 484
Query: 469 GSLRYYGLGLVNGPYNVSLLFAETNFPDPSTERWESRGRRVFDIYVQGTLRWKDFDISKE 528
SL Y L L G Y V+L FAE F + + + + GRR FDIYVQG KDF+I E
Sbjct: 485 ISLTYQALCLGKGNYTVNLHFAEIMFNEKNM--YSNLGRRYFDIYVQGKREVKDFNIVDE 542
Query: 529 AGGPNRAIIKNFSATVSENHLEIHLFWAGKGTCCIPKQGNYGPAISALSVVSAFKPSVSG 588
A G +A++K F V+ LEI L WAGKGT IP +G YGP ISA+SV F
Sbjct: 543 AKGVGKAVVKKFPVMVTNGKLEIRLQWAGKGTQAIPVRGVYGPLISAVSVDPDF------ 596
Query: 589 LPPSTPGNKNHTGLIVGIAVPLGILGLIVISIM---FYLWR---EKDNDDEEVLVGIGSK 642
+PP PG G VG V I + + ++ WR + E+ + +
Sbjct: 597 IPPKEPGTGTGGGSSVGTVVGSVIASTVFLVLLIGGILWWRGCLRPKSQMEKDFKNLDFQ 656
Query: 643 PNIFGYAELRSATKDFNRSNKLGEGGYGPVYK 674
+ F +++ AT +F+ +NK+GEGG+GPV+K
Sbjct: 657 ISSFSLRQIKVATDNFDPANKIGEGGFGPVHK 688
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q9FL28|FLS2_ARATH LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 161 bits (408), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 100/271 (36%), Positives = 149/271 (54%), Gaps = 5/271 (1%)
Query: 79 GVIPEELVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKE 138
G IP+++ L L + N TG L IG L +L L S+N +GP+PRE+GNLK+
Sbjct: 445 GEIPDDIFNCSNLETLSVADNNLTGTLKPLIGKLQKLRILQVSYNSLTGPIPREIGNLKD 504
Query: 139 LTVLAFGTNNFSGALPPELGNLAKLEQLYIDSCGAGGEIPSTFAKLRNMQTLWASDNPFT 198
L +L +N F+G +P E+ NL L+ L + S G IP ++ + L S+N F+
Sbjct: 505 LNILYLHSNGFTGRIPREMSNLTLLQGLRMYSNDLEGPIPEEMFDMKLLSVLDLSNNKFS 564
Query: 199 GKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLESLQMSD-IYNVSSSLDFVMSLK 257
G+IP L L QGN F G IP+SL L+ L + +SD + + + + SLK
Sbjct: 565 GQIPALFSKLESLTYLSLQGNKFNGSIPASLKSLSLLNTFDISDNLLTGTIPGELLASLK 624
Query: 258 NLT-DLSLRNALITGTIPFGIGELQMLQILDLSFNNLTGQIPATLFNIDSLEYLFLGNNS 316
N+ L+ N L+TGTIP +G+L+M+Q +DLS N +G IP +L ++ L N+
Sbjct: 625 NMQLYLNFSNNLLTGTIPKELGKLEMVQEIDLSNNLFSGSIPRSLQACKNVFTLDFSQNN 684
Query: 317 LSGTLPDQKSENLQKI---DLSHNHLSGTFP 344
LSG +PD+ + + I +LS N SG P
Sbjct: 685 LSGHIPDEVFQGMDMIISLNLSRNSFSGEIP 715
|
Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of flagellin (flg22), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Flagellin-binding to the receptor is the first step to initiate the innate immune MAP kinase signaling cascade (MEKK1, MKK4/MKK5 and MPK3/MPK6), resulting in enhanced resistance against pathogens. Binding to the effector AvrPto1 from Pseudomonas syringae blocks the downstream plant immune response. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 866 | ||||||
| 224072359 | 1016 | predicted protein [Populus trichocarpa] | 0.770 | 0.656 | 0.670 | 0.0 | |
| 296089254 | 1037 | unnamed protein product [Vitis vinifera] | 0.777 | 0.648 | 0.678 | 0.0 | |
| 225444253 | 1048 | PREDICTED: probable LRR receptor-like se | 0.773 | 0.639 | 0.676 | 0.0 | |
| 359484008 | 1037 | PREDICTED: probable LRR receptor-like se | 0.774 | 0.647 | 0.677 | 0.0 | |
| 296089258 | 2282 | unnamed protein product [Vitis vinifera] | 0.773 | 0.293 | 0.676 | 0.0 | |
| 224053719 | 1041 | predicted protein [Populus trichocarpa] | 0.766 | 0.637 | 0.666 | 0.0 | |
| 255571932 | 1040 | ATP binding protein, putative [Ricinus c | 0.774 | 0.645 | 0.636 | 0.0 | |
| 359484016 | 1039 | PREDICTED: probable LRR receptor-like se | 0.759 | 0.633 | 0.616 | 0.0 | |
| 359495319 | 1000 | PREDICTED: probable LRR receptor-like se | 0.762 | 0.66 | 0.617 | 0.0 | |
| 359495325 | 993 | PREDICTED: probable LRR receptor-like se | 0.760 | 0.663 | 0.613 | 0.0 |
| >gi|224072359|ref|XP_002303698.1| predicted protein [Populus trichocarpa] gi|222841130|gb|EEE78677.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 915 bits (2364), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 451/673 (67%), Positives = 529/673 (78%), Gaps = 6/673 (0%)
Query: 3 DKHAVRALNSILQQWDAPAVPLWNISGNPCSGSALNATDSEFESPNNNPAIVCNCTFDNG 62
D V ALNS+ +QWD AV LWN+SG PCSGSA++ TD FE P+NNPAI C CT
Sbjct: 15 DGETVSALNSLFEQWDTQAVGLWNLSGEPCSGSAIDQTD--FEDPDNNPAIKCECT---Q 69
Query: 63 ATCHITKLRVYGLNKKGVIPEELVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSH 122
TCHIT+LRVY LNKKGVIPE L L+YLT LKIDQN+FTGPLP+FIGNLS L LS +H
Sbjct: 70 TTCHITQLRVYALNKKGVIPEVLAALKYLTFLKIDQNYFTGPLPAFIGNLSALKGLSIAH 129
Query: 123 NDFSGPVPRELGNLKELTVLAFGTNNFSGALPPELGNLAKLEQLYIDSCGAGGEIPSTFA 182
N FSG +P+ELGNLKELT+L+FG NNFSG LPPELGNL LE+LYI+SCG GGEIPSTFA
Sbjct: 130 NAFSGTIPKELGNLKELTLLSFGVNNFSGTLPPELGNLVNLEELYINSCGLGGEIPSTFA 189
Query: 183 KLRNMQTLWASDNPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLESLQMSD 242
L+ ++ LWASD+ FTG IPDFIGNWT L SLRFQGNSF+GPIP S S L SL SL++SD
Sbjct: 190 NLQRLRVLWASDDSFTGNIPDFIGNWTGLTSLRFQGNSFEGPIPLSFSNLTSLNSLRISD 249
Query: 243 IYNVSSSLDFVMSLKNLTDLSLRNALITGTIPFGIGELQMLQILDLSFNNLTGQIPATLF 302
+ N+SS+LDF+ +LKNLTDL+LRNALI G+IP IGELQ L LDLSFNNLTGQ+P+ LF
Sbjct: 250 LSNMSSTLDFIKNLKNLTDLNLRNALINGSIPSDIGELQTLNRLDLSFNNLTGQVPSALF 309
Query: 303 NIDSLEYLFLGNNSLSGTLPDQKSENLQKIDLSHNHLSGTFPLWVNSELQMNLAVNNFKF 362
+ SLEYLFLGNNSLSGTLP+QKS+ LQ IDLS+N+L+GTFP WV S +Q+NL NNF F
Sbjct: 310 PMSSLEYLFLGNNSLSGTLPEQKSDTLQTIDLSYNYLTGTFPSWVASNVQLNLVANNFTF 369
Query: 363 DISNISVFPGLNCLQRNFTCNRNAPQCKLPSLCCLHPEMR-ADNIVYEGDNSYLGASAFV 421
D SNISV PGLNCLQRNF CNR+ P+ S+ C PEMR AD VYE +NS L A++F
Sbjct: 370 DNSNISVLPGLNCLQRNFPCNRDNPRYANFSIKCGGPEMRTADGTVYEAENSSLSAASFS 429
Query: 422 VTNTEKWAVSKVGLFNGRENASYVLNTQDQVTGTRTPKLYQTSRISAGSLRYYGLGLVNG 481
VT+TEKWAVS VGLF R + YV NT QV T P+LYQTSRIS GSLRY+GLGL NG
Sbjct: 430 VTSTEKWAVSNVGLFADRRSPDYVENTLTQVLSTNIPELYQTSRISPGSLRYFGLGLENG 489
Query: 482 PYNVSLLFAETNFPDPSTERWESRGRRVFDIYVQGTLRWKDFDISKEAGGPNRAIIKNFS 541
PY V LLFAET F D S++ WES GRRVFDIY+QG+ + KDFDISKEAGG R+I + F+
Sbjct: 490 PYTVHLLFAETAFADRSSQTWESLGRRVFDIYIQGSRQLKDFDISKEAGGVERSITRIFN 549
Query: 542 ATVSENHLEIHLFWAGKGTCCIPKQGNYGPAISALSVVSAFKPSVSGLPPSTPGNKNHTG 601
TVSENHLEIHLFWAGKGTCC P QG YGP ISAL+VV F P+VSG+PPST K+ TG
Sbjct: 550 VTVSENHLEIHLFWAGKGTCCTPVQGYYGPIISALNVVPGFTPTVSGIPPSTRKEKSRTG 609
Query: 602 LIVGIAVPLGILGLIVISIMFYLWREKDNDDEEVLVGIGSKPNIFGYAELRSATKDFNRS 661
++VGI+V G++ L +I + Y+ R+KD++DEEV G+G PN F YA+LR AT DF+ S
Sbjct: 610 MVVGISVSAGVVCLTLIFAVVYIMRKKDSEDEEVFPGMGPGPNTFSYAQLRGATDDFSPS 669
Query: 662 NKLGEGGYGPVYK 674
N LGEGG+G VYK
Sbjct: 670 NMLGEGGFGAVYK 682
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296089254|emb|CBI39026.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 907 bits (2344), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 461/679 (67%), Positives = 536/679 (78%), Gaps = 6/679 (0%)
Query: 3 DKHAVRALNSILQQWDAPAVPLWNISGNPCSGSALNATDSEFESPNNNPAIVCNCTFDNG 62
D ALNSI QQWD + LWNISG PC+GSA++ S FE NNPAI C+CT++N
Sbjct: 44 DASEAEALNSIFQQWDTQSAALWNISGEPCTGSAISG--SGFEETANNPAITCDCTYNNS 101
Query: 63 ATCHITKLRVYGLNKKGVIPEELVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSH 122
TCHIT+LRVY LN++GVIPEEL L YLT LKIDQN+FTGPLPSFIGNLS+L LS +H
Sbjct: 102 TTCHITQLRVYALNRRGVIPEELTALTYLTFLKIDQNYFTGPLPSFIGNLSKLQLLSLAH 161
Query: 123 NDFSGPVPRELGNLKELTVLAFGTNNFSGALPPELGNLAKLEQLYIDSCGAGGEIPSTFA 182
N SG +P ELGNL+ELTVL+ +NNFSG LPPELGNL L +LYI+S G GGEIPSTFA
Sbjct: 162 NALSGTIPMELGNLQELTVLSLSSNNFSGTLPPELGNLVNLRELYINSLGVGGEIPSTFA 221
Query: 183 KLRNMQTLWASDNPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLESLQMSD 242
L NMQ + ASD PF+GKIPDFIGNWTKL SLRFQGNSF+GPIPSS SKL SL SL++SD
Sbjct: 222 NLENMQVMRASDCPFSGKIPDFIGNWTKLTSLRFQGNSFEGPIPSSFSKLTSLSSLRISD 281
Query: 243 IYNVSSSLDFVMSLKNLTDLSLRNALITGTIPFGIGELQMLQILDLSFNNLTGQIPATLF 302
++NVSSSLDF+ LKNLTDL LRNALITG+IP IGE Q LQ LDLSFNNLTG IP++LF
Sbjct: 282 LFNVSSSLDFIKDLKNLTDLVLRNALITGSIPSYIGEFQSLQRLDLSFNNLTGGIPSSLF 341
Query: 303 NIDSLEYLFLGNNSLSGTLPDQKSENLQKIDLSHNHLSGTFPLWVNSELQMNLAVNNFKF 362
N+ SL LFLGNNSLSGTLP QKS+ LQ IDLS+N LSG+FP WV S LQ+NL NNF F
Sbjct: 342 NLGSLANLFLGNNSLSGTLPTQKSKQLQNIDLSYNELSGSFPSWVTSGLQLNLVANNFTF 401
Query: 363 DISNISVFPGLNCLQRNFTCNRNAPQCKLPSLCCLHPEMR-ADNIVYEGDNSYLGASAFV 421
D SN S+ PGLNCLQRNF CN+N P+ S+ C EMR A+ IVYE +NS LGA+++
Sbjct: 402 DSSNRSLLPGLNCLQRNFPCNKNTPRYANFSIKCGGSEMRNAEGIVYEAENSTLGAASYY 461
Query: 422 VTNTEKWAVSKVGLFNGRENASYVLNTQDQVTGTRTPKLYQTSRISAGSLRYYGLGLVNG 481
VT+TEKWAVS VGLF+ R N SYV N QVTGT TP+L+Q+SRIS GSLRYYGLGL NG
Sbjct: 462 VTSTEKWAVSNVGLFSDRSNPSYVDNNLMQVTGTNTPELFQSSRISPGSLRYYGLGLENG 521
Query: 482 PYNVSLLFAETNFPDPSTERWESRGRRVFDIYVQGTLRWKDFDISKEAGGPNRAIIKNFS 541
PY VSL FAET F D T+ WES GRRVFDIY+QG L++KDFDISKEAGG RA+ K F
Sbjct: 522 PYIVSLEFAETVFKDRDTQTWESLGRRVFDIYIQGALQFKDFDISKEAGGVERALEKKFY 581
Query: 542 ATVSENHLEIHLFWAGKGTCCIPKQGNYGPAISALSVVSAFKPSVSGLPPSTPGNKNHTG 601
ATVSEN+LEIHLFWAGKGTCC P QG YGP+ISALSVVS F P+V+G PP P KN+TG
Sbjct: 582 ATVSENYLEIHLFWAGKGTCCNPIQGYYGPSISALSVVSDFTPTVAGNPPIPPSKKNNTG 641
Query: 602 LIVGIAVPLGILGLIVISIMFYLWREKD--NDDEEVLVGIGSKPNIFGYAELRSATKDFN 659
LIVG+AV +G++ +I+I + Y+ R+ N+DEE L GIG +PN F Y+ELR+AT+DFN
Sbjct: 642 LIVGVAVSVGVVSMILICSVLYIKRKASYVNEDEEFL-GIGPRPNTFSYSELRTATEDFN 700
Query: 660 RSNKLGEGGYGPVYKVTAN 678
+NKLGEGG+GPVYK T N
Sbjct: 701 PANKLGEGGFGPVYKGTLN 719
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225444253|ref|XP_002273016.1| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g56130-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 905 bits (2338), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 457/676 (67%), Positives = 538/676 (79%), Gaps = 6/676 (0%)
Query: 3 DKHAVRALNSILQQWDAPAVPLWNISGNPCSGSALNATDSEFESPNNNPAIVCNCTFDNG 62
D ALNSI QQWD +V LWNISG PC+GSA+N T FES +NNPAI C+C++D+G
Sbjct: 44 DPSEAEALNSIFQQWDTQSVALWNISGEPCTGSAINGT--AFESDDNNPAIKCDCSYDSG 101
Query: 63 ATCHITKLRVYGLNKKGVIPEELVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSH 122
TCHIT+LRVY LNKKGVIPEEL TL YLT LKIDQN+FTGPLPSFIGNLS+L LS +H
Sbjct: 102 TTCHITQLRVYALNKKGVIPEELATLTYLTFLKIDQNYFTGPLPSFIGNLSKLSLLSIAH 161
Query: 123 NDFSGPVPRELGNLKELTVLAFGTNNFSGALPPELGNLAKLEQLYIDSCGAGGEIPSTFA 182
N FSG +P+ELGNL EL VL+ G+NNFSG LPPELGNL+KL +LYI+SCGAGGEIPSTFA
Sbjct: 162 NAFSGTIPKELGNLTELEVLSLGSNNFSGNLPPELGNLSKLRELYINSCGAGGEIPSTFA 221
Query: 183 KLRNMQTLWASDNPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLESLQMSD 242
+L N+Q + SD+PFTGKIP+FIGN+T+L SLRFQGNSF+GPIPSS SKL SL SL++SD
Sbjct: 222 ELLNLQVMEGSDSPFTGKIPNFIGNFTRLTSLRFQGNSFEGPIPSSFSKLISLSSLRISD 281
Query: 243 IYNVSSSLDFVMSLKNLTDLSLRNALITGTIPFGIGELQMLQILDLSFNNLTGQIPATLF 302
+YNVSSSLDF+ LKNLTDL+LRNALI+G+IP GE Q LQ LDLSFNNLTG++P++LF
Sbjct: 282 LYNVSSSLDFIRDLKNLTDLNLRNALISGSIPSFTGEFQKLQRLDLSFNNLTGEVPSSLF 341
Query: 303 NIDSLEYLFLGNNSLSGTLPDQKSENLQKIDLSHNHLSGTFPLWVNSE--LQMNLAVNNF 360
N +L LFLGNNSLSG+LP QKSE L+ IDLS+N LSG+FP WV S LQ+NL NNF
Sbjct: 342 NSSALTDLFLGNNSLSGSLPAQKSEELKNIDLSYNQLSGSFPSWVTSASGLQLNLVANNF 401
Query: 361 KFDISNISVFPGLNCLQRNFTCNRNAPQCKLPSLCCLHPEMR-ADNIVYEGDNSYLGASA 419
F SN S F GLNCLQRNF CNRN P S+ C EMR AD VYE DNS LGA++
Sbjct: 402 IFGSSNSSFFQGLNCLQRNFPCNRNTPLYANFSVNCGGQEMRIADGTVYEVDNSSLGAAS 461
Query: 420 FVVTNTEKWAVSKVGLFNGRENASYVLNTQDQVTGTRTPKLYQTSRISAGSLRYYGLGLV 479
+ VTNTEKWAVS VGLF+ N +Y+ N QV T TP+L+QTSR+S GSLRYYGLGL
Sbjct: 462 YYVTNTEKWAVSNVGLFSDSSNPAYLENNLKQVADTSTPELFQTSRVSPGSLRYYGLGLE 521
Query: 480 NGPYNVSLLFAETNFPDPSTERWESRGRRVFDIYVQGTLRWKDFDISKEAGGPNRAIIKN 539
NG Y VSL FAET F STE WES GRRVFDIY+QG+L+ KDFDISKEAGG ++A+ K
Sbjct: 522 NGNYTVSLEFAETKFASRSTETWESLGRRVFDIYIQGSLQLKDFDISKEAGGVDKALEKK 581
Query: 540 FSATVSENHLEIHLFWAGKGTCCIPKQGNYGPAISALSVVSAFKPSVSGLPPSTPGNKNH 599
F+ATVSEN+LEIHLFWAGKGTCCIP QG YGP+ISALSVVS F PSVSG+P P KN+
Sbjct: 582 FNATVSENYLEIHLFWAGKGTCCIPVQGYYGPSISALSVVSDFTPSVSGIPSIPPSKKNN 641
Query: 600 TGLIVGIAVPLGILGLIVISIMFYL-WREKDNDDEEVLVGIGSKPNIFGYAELRSATKDF 658
TGLIVG+ V +G + I+I +FY+ R + +++E L+GIG +PN F YAELR+AT+DF
Sbjct: 642 TGLIVGVVVAVGSVSFILICAVFYMKMRASNINEDEELLGIGPRPNTFTYAELRTATEDF 701
Query: 659 NRSNKLGEGGYGPVYK 674
N +NKLGEGG+GPVYK
Sbjct: 702 NPTNKLGEGGFGPVYK 717
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359484008|ref|XP_002272404.2| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g56130-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 903 bits (2334), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 459/677 (67%), Positives = 535/677 (79%), Gaps = 6/677 (0%)
Query: 6 AVRALNSILQQWDAPAVPLWNISGNPCSGSALNATDSEFESPNNNPAIVCNCTFDNGATC 65
A ALNSI QQWD + LWNISG PC+GSA++ S FE NNPAI C+CT++N TC
Sbjct: 2 AAEALNSIFQQWDTQSAALWNISGEPCTGSAISG--SGFEETANNPAITCDCTYNNSTTC 59
Query: 66 HITKLRVYGLNKKGVIPEELVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDF 125
HIT+LRVY LN++GVIPEEL L YLT LKIDQN+FTGPLPSFIGNLS+L LS +HN
Sbjct: 60 HITQLRVYALNRRGVIPEELTALTYLTFLKIDQNYFTGPLPSFIGNLSKLQLLSLAHNAL 119
Query: 126 SGPVPRELGNLKELTVLAFGTNNFSGALPPELGNLAKLEQLYIDSCGAGGEIPSTFAKLR 185
SG +P ELGNL+ELTVL+ +NNFSG LPPELGNL L +LYI+S G GGEIPSTFA L
Sbjct: 120 SGTIPMELGNLQELTVLSLSSNNFSGTLPPELGNLVNLRELYINSLGVGGEIPSTFANLE 179
Query: 186 NMQTLWASDNPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLESLQMSDIYN 245
NMQ + ASD PF+GKIPDFIGNWTKL SLRFQGNSF+GPIPSS SKL SL SL++SD++N
Sbjct: 180 NMQVMRASDCPFSGKIPDFIGNWTKLTSLRFQGNSFEGPIPSSFSKLTSLSSLRISDLFN 239
Query: 246 VSSSLDFVMSLKNLTDLSLRNALITGTIPFGIGELQMLQILDLSFNNLTGQIPATLFNID 305
VSSSLDF+ LKNLTDL LRNALITG+IP IGE Q LQ LDLSFNNLTG IP++LFN+
Sbjct: 240 VSSSLDFIKDLKNLTDLVLRNALITGSIPSYIGEFQSLQRLDLSFNNLTGGIPSSLFNLG 299
Query: 306 SLEYLFLGNNSLSGTLPDQKSENLQKIDLSHNHLSGTFPLWVNSELQMNLAVNNFKFDIS 365
SL LFLGNNSLSGTLP QKS+ LQ IDLS+N LSG+FP WV S LQ+NL NNF FD S
Sbjct: 300 SLANLFLGNNSLSGTLPTQKSKQLQNIDLSYNELSGSFPSWVTSGLQLNLVANNFTFDSS 359
Query: 366 NISVFPGLNCLQRNFTCNRNAPQCKLPSLCCLHPEMR-ADNIVYEGDNSYLGASAFVVTN 424
N S+ PGLNCLQRNF CN+N P+ S+ C EMR A+ IVYE +NS LGA+++ VT+
Sbjct: 360 NRSLLPGLNCLQRNFPCNKNTPRYANFSIKCGGSEMRNAEGIVYEAENSTLGAASYYVTS 419
Query: 425 TEKWAVSKVGLFNGRENASYVLNTQDQVTGTRTPKLYQTSRISAGSLRYYGLGLVNGPYN 484
TEKWAVS VGLF+ R N SYV N QVTGT TP+L+Q+SRIS GSLRYYGLGL NGPY
Sbjct: 420 TEKWAVSNVGLFSDRSNPSYVDNNLMQVTGTNTPELFQSSRISPGSLRYYGLGLENGPYI 479
Query: 485 VSLLFAETNFPDPSTERWESRGRRVFDIYVQGTLRWKDFDISKEAGGPNRAIIKNFSATV 544
VSL FAET F D T+ WES GRRVFDIY+QG L++KDFDISKEAGG RA+ K F ATV
Sbjct: 480 VSLEFAETVFKDRDTQTWESLGRRVFDIYIQGALQFKDFDISKEAGGVERALEKKFYATV 539
Query: 545 SENHLEIHLFWAGKGTCCIPKQGNYGPAISALSVVSAFKPSVSGLPPSTPGNKNHTGLIV 604
SEN+LEIHLFWAGKGTCC P QG YGP+ISALSVVS F P+V+G PP P KN+TGLIV
Sbjct: 540 SENYLEIHLFWAGKGTCCNPIQGYYGPSISALSVVSDFTPTVAGNPPIPPSKKNNTGLIV 599
Query: 605 GIAVPLGILGLIVISIMFYLWREKD--NDDEEV-LVGIGSKPNIFGYAELRSATKDFNRS 661
G+AV +G++ +I+I + Y+ R+ N+DE +GIG +PN F Y+ELR+AT+DFN +
Sbjct: 600 GVAVSVGVVSMILICSVLYIKRKASYVNEDEVAEFLGIGPRPNTFSYSELRTATEDFNPA 659
Query: 662 NKLGEGGYGPVYKVTAN 678
NKLGEGG+GPVYK T N
Sbjct: 660 NKLGEGGFGPVYKGTLN 676
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296089258|emb|CBI39030.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 903 bits (2334), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 457/676 (67%), Positives = 538/676 (79%), Gaps = 6/676 (0%)
Query: 3 DKHAVRALNSILQQWDAPAVPLWNISGNPCSGSALNATDSEFESPNNNPAIVCNCTFDNG 62
D ALNSI QQWD +V LWNISG PC+GSA+N T FES +NNPAI C+C++D+G
Sbjct: 44 DPSEAEALNSIFQQWDTQSVALWNISGEPCTGSAINGT--AFESDDNNPAIKCDCSYDSG 101
Query: 63 ATCHITKLRVYGLNKKGVIPEELVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSH 122
TCHIT+LRVY LNKKGVIPEEL TL YLT LKIDQN+FTGPLPSFIGNLS+L LS +H
Sbjct: 102 TTCHITQLRVYALNKKGVIPEELATLTYLTFLKIDQNYFTGPLPSFIGNLSKLSLLSIAH 161
Query: 123 NDFSGPVPRELGNLKELTVLAFGTNNFSGALPPELGNLAKLEQLYIDSCGAGGEIPSTFA 182
N FSG +P+ELGNL EL VL+ G+NNFSG LPPELGNL+KL +LYI+SCGAGGEIPSTFA
Sbjct: 162 NAFSGTIPKELGNLTELEVLSLGSNNFSGNLPPELGNLSKLRELYINSCGAGGEIPSTFA 221
Query: 183 KLRNMQTLWASDNPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLESLQMSD 242
+L N+Q + SD+PFTGKIP+FIGN+T+L SLRFQGNSF+GPIPSS SKL SL SL++SD
Sbjct: 222 ELLNLQVMEGSDSPFTGKIPNFIGNFTRLTSLRFQGNSFEGPIPSSFSKLISLSSLRISD 281
Query: 243 IYNVSSSLDFVMSLKNLTDLSLRNALITGTIPFGIGELQMLQILDLSFNNLTGQIPATLF 302
+YNVSSSLDF+ LKNLTDL+LRNALI+G+IP GE Q LQ LDLSFNNLTG++P++LF
Sbjct: 282 LYNVSSSLDFIRDLKNLTDLNLRNALISGSIPSFTGEFQKLQRLDLSFNNLTGEVPSSLF 341
Query: 303 NIDSLEYLFLGNNSLSGTLPDQKSENLQKIDLSHNHLSGTFPLWVNSE--LQMNLAVNNF 360
N +L LFLGNNSLSG+LP QKSE L+ IDLS+N LSG+FP WV S LQ+NL NNF
Sbjct: 342 NSSALTDLFLGNNSLSGSLPAQKSEELKNIDLSYNQLSGSFPSWVTSASGLQLNLVANNF 401
Query: 361 KFDISNISVFPGLNCLQRNFTCNRNAPQCKLPSLCCLHPEMR-ADNIVYEGDNSYLGASA 419
F SN S F GLNCLQRNF CNRN P S+ C EMR AD VYE DNS LGA++
Sbjct: 402 IFGSSNSSFFQGLNCLQRNFPCNRNTPLYANFSVNCGGQEMRIADGTVYEVDNSSLGAAS 461
Query: 420 FVVTNTEKWAVSKVGLFNGRENASYVLNTQDQVTGTRTPKLYQTSRISAGSLRYYGLGLV 479
+ VTNTEKWAVS VGLF+ N +Y+ N QV T TP+L+QTSR+S GSLRYYGLGL
Sbjct: 462 YYVTNTEKWAVSNVGLFSDSSNPAYLENNLKQVADTSTPELFQTSRVSPGSLRYYGLGLE 521
Query: 480 NGPYNVSLLFAETNFPDPSTERWESRGRRVFDIYVQGTLRWKDFDISKEAGGPNRAIIKN 539
NG Y VSL FAET F STE WES GRRVFDIY+QG+L+ KDFDISKEAGG ++A+ K
Sbjct: 522 NGNYTVSLEFAETKFASRSTETWESLGRRVFDIYIQGSLQLKDFDISKEAGGVDKALEKK 581
Query: 540 FSATVSENHLEIHLFWAGKGTCCIPKQGNYGPAISALSVVSAFKPSVSGLPPSTPGNKNH 599
F+ATVSEN+LEIHLFWAGKGTCCIP QG YGP+ISALSVVS F PSVSG+P P KN+
Sbjct: 582 FNATVSENYLEIHLFWAGKGTCCIPVQGYYGPSISALSVVSDFTPSVSGIPSIPPSKKNN 641
Query: 600 TGLIVGIAVPLGILGLIVISIMFYL-WREKDNDDEEVLVGIGSKPNIFGYAELRSATKDF 658
TGLIVG+ V +G + I+I +FY+ R + +++E L+GIG +PN F YAELR+AT+DF
Sbjct: 642 TGLIVGVVVAVGSVSFILICAVFYMKMRASNINEDEELLGIGPRPNTFTYAELRTATEDF 701
Query: 659 NRSNKLGEGGYGPVYK 674
N +NKLGEGG+GPVYK
Sbjct: 702 NPTNKLGEGGFGPVYK 717
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224053719|ref|XP_002297945.1| predicted protein [Populus trichocarpa] gi|222845203|gb|EEE82750.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 893 bits (2307), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 445/668 (66%), Positives = 531/668 (79%), Gaps = 4/668 (0%)
Query: 9 ALNSILQQWDAPAVPLWNISGNPCSGSALNATDSEFESPNNNPAIVCNCTFDNGATCHIT 68
ALN + +QWD AV LWN+SG PCSGSA+N TD FE NNPAI C CT++N ATCHIT
Sbjct: 46 ALNLLFEQWDTKAVGLWNLSGEPCSGSAINGTD--FEDTANNPAIKCVCTYNNSATCHIT 103
Query: 69 KLRVYGLNKKGVIPEELVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGP 128
+LRVY LNK+G IPE + L+YLT+LKIDQN+FTGPLP+FIGNL+ L LS +HN FSG
Sbjct: 104 QLRVYALNKRGEIPEVITALKYLTLLKIDQNYFTGPLPAFIGNLTALQSLSIAHNAFSGT 163
Query: 129 VPRELGNLKELTVLAFGTNNFSGALPPELGNLAKLEQLYIDSCGAGGEIPSTFAKLRNMQ 188
+P ELGNLKELT+L+ G NNFSG LPPELG L LEQLY++SCG GGEIPSTF L+ M
Sbjct: 164 IPTELGNLKELTLLSIGINNFSGTLPPELGQLVNLEQLYVNSCGLGGEIPSTFVNLKKMT 223
Query: 189 TLWASDNPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLESLQMSDIYNVSS 248
ASD FTG IPDFIGNWT+L SLRFQGNSF+GPIPSS S L SLESL++SD+ NVSS
Sbjct: 224 IFSASDAAFTGNIPDFIGNWTRLTSLRFQGNSFEGPIPSSFSNLTSLESLRISDLSNVSS 283
Query: 249 SLDFVMSLKNLTDLSLRNALITGTIPFGIGEL-QMLQILDLSFNNLTGQIPATLFNIDSL 307
+LDF+ +LK+LTDL+LRNALI+G+IP IGE+ Q L LDLSFNNLTGQ+P+ LFN+ SL
Sbjct: 284 TLDFIKNLKSLTDLTLRNALISGSIPSDIGEIFQTLDRLDLSFNNLTGQVPSALFNMSSL 343
Query: 308 EYLFLGNNSLSGTLPDQKSENLQKIDLSHNHLSGTFPLWVNSELQMNLAVNNFKFDISNI 367
+YLFLGNNSL GTLP+QKS LQ IDLS+N+LSGTFP WV S +Q+NL NNF FD SNI
Sbjct: 344 QYLFLGNNSLIGTLPNQKSSKLQTIDLSYNYLSGTFPSWVTSNIQLNLVANNFTFDSSNI 403
Query: 368 SVFPGLNCLQRNFTCNRNAPQCKLPSLCCLHPEMR-ADNIVYEGDNSYLGASAFVVTNTE 426
SV PGLNCLQRNF CNRN P S+ C P MR AD VYE +NS + A++F VT+TE
Sbjct: 404 SVLPGLNCLQRNFPCNRNPPLYANFSIKCGGPMMRTADGTVYEAENSSISAASFTVTSTE 463
Query: 427 KWAVSKVGLFNGRENASYVLNTQDQVTGTRTPKLYQTSRISAGSLRYYGLGLVNGPYNVS 486
KWAVS GL+ REN SYV N QVTGT TP+LYQTSRIS GSLRYYGLGL NGPY ++
Sbjct: 464 KWAVSNAGLYADRENPSYVENNLKQVTGTNTPELYQTSRISPGSLRYYGLGLQNGPYTIN 523
Query: 487 LLFAETNFPDPSTERWESRGRRVFDIYVQGTLRWKDFDISKEAGGPNRAIIKNFSATVSE 546
LLFAET F S++ W+S RRVFDIY+QG + KDFDIS EAGG +RAI K F+ TVSE
Sbjct: 524 LLFAETRFAARSSQTWDSLARRVFDIYIQGNRQLKDFDISMEAGGVDRAITKTFNVTVSE 583
Query: 547 NHLEIHLFWAGKGTCCIPKQGNYGPAISALSVVSAFKPSVSGLPPSTPGNKNHTGLIVGI 606
NHLEIHLFWAGKGTCC P QG YGP ISAL+VV F P+VSG+P ST K+ TG+IVG+
Sbjct: 584 NHLEIHLFWAGKGTCCNPVQGYYGPIISALNVVPDFTPNVSGIPSSTRKEKSRTGVIVGV 643
Query: 607 AVPLGILGLIVISIMFYLWREKDNDDEEVLVGIGSKPNIFGYAELRSATKDFNRSNKLGE 666
++ +G++ LI+IS++ Y+ +KD++DEEVL+G+G +PN F Y++LR+AT+DF+ SNKLGE
Sbjct: 644 SISVGVVSLILISVLLYIRLKKDSEDEEVLLGMGPRPNTFSYSQLRTATEDFSPSNKLGE 703
Query: 667 GGYGPVYK 674
GGYGPVYK
Sbjct: 704 GGYGPVYK 711
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255571932|ref|XP_002526908.1| ATP binding protein, putative [Ricinus communis] gi|223533747|gb|EEF35480.1| ATP binding protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 879 bits (2272), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 429/674 (63%), Positives = 526/674 (78%), Gaps = 3/674 (0%)
Query: 3 DKHAVRALNSILQQWDAPAVPLWNISGNPCSGSALNATDSEFESPNNNPAIVCNCTFDNG 62
D VRALN ILQ W + WNISG+PC+G+A++ +S+ E+P N+P+I C+C+FDN
Sbjct: 39 DPAEVRALNEILQGWSTQSTDSWNISGDPCTGTAID--ESDIEAPGNSPSIKCDCSFDNN 96
Query: 63 ATCHITKLRVYGLNKKGVIPEELVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSH 122
+TCHIT+L V+ LN++G+IPE L+ L++L LK+D+N+FTGPLP+F+GNL+ L L+ +H
Sbjct: 97 STCHITRLLVFNLNRRGMIPETLLVLKHLIFLKLDKNYFTGPLPAFLGNLTALRTLAVAH 156
Query: 123 NDFSGPVPRELGNLKELTVLAFGTNNFSGALPPELGNLAKLEQLYIDSCGAGGEIPSTFA 182
N SGP+P+E+GNLK+LT+L+ G NNFSG LPPELGNL KLEQLYI+SCG GEIP TFA
Sbjct: 157 NMLSGPIPKEIGNLKDLTLLSLGVNNFSGTLPPELGNLVKLEQLYINSCGLNGEIPPTFA 216
Query: 183 KLRNMQTLWASDNPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLESLQMSD 242
KL ++ LWA DNPFTG IPDFIG WT+L +LR QGNSF+GPIPSS S L S++SL++SD
Sbjct: 217 KLTRIRILWAFDNPFTGNIPDFIGTWTELTTLRLQGNSFKGPIPSSFSNLVSMKSLRLSD 276
Query: 243 IYNVSSSLDFVMSLKNLTDLSLRNALITGTIPFGIGELQMLQILDLSFNNLTGQIPATLF 302
+ NVSS+LDF+ +LKNLTDL+LRNALIT TIP IGE Q L+ LDLSFNNL GQIP LF
Sbjct: 277 LRNVSSTLDFIKNLKNLTDLNLRNALITDTIPLDIGEFQNLEALDLSFNNLRGQIPNALF 336
Query: 303 NIDSLEYLFLGNNSLSGTLPDQKSENLQKIDLSHNHLSGTFPLWVNSELQMNLAVNNFKF 362
++ SLE+LFLGNNSLSG LP++KS LQ IDLS+N+LSG FP WVNS LQ+NL NNF F
Sbjct: 337 SLSSLEFLFLGNNSLSGALPNEKSGLLQTIDLSYNNLSGRFPAWVNSNLQLNLVANNFVF 396
Query: 363 DISNISVFPGLNCLQRNFTCNRNAPQCKLPSLCCLHPEMRADNIVYEGDNSYLGASAFVV 422
D SN+SV PGLNCLQRNF CNRN P+ S+ C PEMRA I+YE +NS +G ++ V
Sbjct: 397 DRSNMSVIPGLNCLQRNFPCNRNPPRYANFSIKCGGPEMRAAGILYEAENSTMGPASIHV 456
Query: 423 TNTEKWAVSKVGLFNGRENASYVLNTQDQVTGTRTPKLYQTSRISAGSLRYYGLGLVNGP 482
T+T+KWAVS GLF R+N YV +TQ QVTGT +P LY TSR S GS+RYYGLGL NGP
Sbjct: 457 TSTQKWAVSITGLFADRQNPVYVEHTQSQVTGTNSPDLYLTSRTSPGSIRYYGLGLQNGP 516
Query: 483 YNVSLLFAETNFPDPSTERWESRGRRVFDIYVQGTLRWKDFDISKEAGGPNRAIIKNFSA 542
Y++SLLFAET F S++ WES GRRVFDIY+QG L KDFDISKEAG A+ K F+
Sbjct: 517 YDISLLFAETGFQHKSSQIWESNGRRVFDIYIQGRLELKDFDISKEAGAIEIAVTKRFNI 576
Query: 543 TVSENHLEIHLFWAGKGTCCIPKQGNYGPAISALSVVSAFKPSVSGLPPSTPGNKNHTGL 602
V+ENHLEIHLFWAG GTCC P QGNYGP ISA++VV AF+P+VSG+PP+T K+ T L
Sbjct: 577 NVTENHLEIHLFWAGMGTCCTPIQGNYGPIISAVNVVPAFRPTVSGIPPNT-RKKSSTEL 635
Query: 603 IVGIAVPLGILGLIVISIMFYLWREKDNDDEEVLVGIGSKPNIFGYAELRSATKDFNRSN 662
IVGIAV G+L I+I +MFY+ + DEEVL GI S+P F YAELR+ATK F SN
Sbjct: 636 IVGIAVSAGVLTFILIFVMFYVKVKAGKLDEEVLSGISSRPITFSYAELRTATKGFCPSN 695
Query: 663 KLGEGGYGPVYKVT 676
+LGEGGYGPVYK T
Sbjct: 696 QLGEGGYGPVYKGT 709
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359484016|ref|XP_002272816.2| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g56130-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 838 bits (2164), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 417/676 (61%), Positives = 511/676 (75%), Gaps = 18/676 (2%)
Query: 7 VRALNSILQQWDAPAVPLWNISGNPCSGSALNATDSEFESPNNNPAIVCNCTFDNGATCH 66
V+ALNS+ Q+WD AVPLWNISG PCSGSA+N T EFES N+PAI C+C++D+ TCH
Sbjct: 36 VKALNSLFQKWDIEAVPLWNISGEPCSGSAINGT--EFESEANSPAIKCDCSYDSNTTCH 93
Query: 67 ITKLRVYGLNKKGVIPEELVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFS 126
IT+LRV+ LNK+GVI EE YL VLK+D+N+FTGPLPSFIGNLS+L +LS SHN S
Sbjct: 94 ITQLRVHALNKRGVIVEEFKAFTYLMVLKLDKNYFTGPLPSFIGNLSQLTYLSVSHNALS 153
Query: 127 GPVPRELGNLKELTVLAFGTNNFSGALPPELGNLAKLEQLYIDSCGAGGEIPSTFAKLRN 186
G +P+ELGNLKEL +L+ G+NNFSG LPPE+GNL KL+Q+YIDS G GEIPSTFAKL++
Sbjct: 154 GTIPKELGNLKELLMLSIGSNNFSGTLPPEIGNLVKLQQIYIDSSGVSGEIPSTFAKLQD 213
Query: 187 MQTLWASDNPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLESLQMSDIYNV 246
M ++A+D P TGKIPDFIGNWTKL+SLRFQGNS +GPIPSS SKL SL +L++SD+ NV
Sbjct: 214 MVVMFATDVPITGKIPDFIGNWTKLESLRFQGNSLEGPIPSSFSKLTSLTTLRISDLSNV 273
Query: 247 SSSLDFVMSLKNLTDLSLRNALITGTIPFGIGELQMLQILDLSFNNLTGQIPATLFNIDS 306
SSSLDF+ +KNLTDL LRN+LI+G+IPF IGE Q L+ LDLSFNNLTG+IP LFN+ S
Sbjct: 274 SSSLDFIKEMKNLTDLVLRNSLISGSIPFYIGEFQSLKTLDLSFNNLTGEIPDALFNLSS 333
Query: 307 LEYLFLGNNSLSGTLPDQKSENLQKIDLSHNHLSGTFPLWVNSELQMNLAVNNFKFDISN 366
L LFLG N LSGT P QKSE LQ IDLS+N LSG+FP W+ S LQ+NL NN FD +N
Sbjct: 334 LTSLFLGTNRLSGTFPAQKSEQLQTIDLSYNELSGSFPSWLKSGLQLNLVANNLTFDSTN 393
Query: 367 ISVFPGLNCLQRNFTCNRNAPQCKLPSLCCLHPEMRA-DNIVYEGDNSYLGASA---FVV 422
S+F GL CLQRNF CNR+ P S+ C PE R D VYE DNS +A + V
Sbjct: 394 RSIFEGLECLQRNFPCNRDPPPYTNVSIKCGGPEWRTPDGTVYEADNSITTGTASTSYYV 453
Query: 423 TNTEKWAVSKVGLFNGRENASYVLNTQDQVTGTRTPKLYQTSRISAGSLRYYGLGLVNGP 482
+ E W VS VGL++ R + + +V+GT P+L++TSRIS GSLRYYGLGL NG
Sbjct: 454 SRLENWGVSNVGLYSDR------IAYKTEVSGTNHPELFKTSRISPGSLRYYGLGLQNGH 507
Query: 483 YNVSLLFAETNFPDPSTERWESRGRRVFDIYVQGTLRWKDFDISKEAGGPNRAIIKNFSA 542
Y VSL FAE D S + WES GRRVFDIY+QGTL+ KDFDI+KEAGG RAI + F+A
Sbjct: 508 YTVSLQFAEMELKDQSAQTWESIGRRVFDIYIQGTLQLKDFDITKEAGGVERAIERKFNA 567
Query: 543 TVSENHLEIHLFWAGKGTCCIPKQGNYGPAISALSVVSAFKPSVSGLPPSTPGNKNHTGL 602
VS+N+LEIHLFWAGKGTCCIP +G YGP+ISALSVVS K +P +TP K +TGL
Sbjct: 568 VVSQNYLEIHLFWAGKGTCCIPFEGYYGPSISALSVVSDLKR----VPTTTPPKKGYTGL 623
Query: 603 IVGIAVPLGILGLI-VISIMFYL-WREKDNDDEEVLVGIGSKPNIFGYAELRSATKDFNR 660
I GI +GIL I +I +FY+ W+ + + + VL+G+G +PN F YAELR+AT++F+
Sbjct: 624 IAGIVAAIGILSFILIICAVFYVKWKASNLNKDIVLLGVGPRPNTFRYAELRTATENFSA 683
Query: 661 SNKLGEGGYGPVYKVT 676
+NKLGEGG+G VYK T
Sbjct: 684 TNKLGEGGFGSVYKGT 699
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359495319|ref|XP_002271226.2| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g56130-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 802 bits (2072), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 418/677 (61%), Positives = 514/677 (75%), Gaps = 17/677 (2%)
Query: 7 VRALNSILQQWDAPAVPLWNISGNPCSGSALNATDSEFESPNNNPAIVCNCTFDNGATCH 66
V+ALNSI QQW A LWNISG PCSGSA++ T NP I CNCT++ TCH
Sbjct: 16 VKALNSIFQQWGTKAPKLWNISGEPCSGSAIDET--YIWDQTINPTIKCNCTYNTHTTCH 73
Query: 67 ITKLRVYGLNKKGVIPEELVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFS 126
IT+L++Y LNK+G IP+EL L YLT L +D+N FTG LP FIGNLS+L F S +HN FS
Sbjct: 74 ITELKIYALNKRGRIPKELAALTYLTYLLLDRNSFTGHLPPFIGNLSKLQFFSIAHNAFS 133
Query: 127 GPVPRELGNLKELTVLAFGTNNFSGALPPELGNLAKLEQLYIDSCGAGGEIPSTFAKLRN 186
G +P++LG LKEL +LA G+NNFSGALPPELGNLAKL+++YI+SCGAGGEIPSTFA L N
Sbjct: 134 GTIPKDLGKLKELKILALGSNNFSGALPPELGNLAKLQEIYINSCGAGGEIPSTFANLYN 193
Query: 187 MQTLWASDNPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLESLQMSDIYNV 246
++T+WASD FTGKIP+FIGNWTKL SLR +GNSF+GPIPSSLS LASL++L +SDIY V
Sbjct: 194 LETVWASDCQFTGKIPNFIGNWTKLWSLRLEGNSFKGPIPSSLSSLASLQTLHISDIYEV 253
Query: 247 SSSLDFVMSLKNLTDLSLRNALITGTIPFGIGELQMLQILDLSFNNLTGQIPATLFNIDS 306
SSSLDF+ LKNLT L LRN LI+G+IP IGE Q LQ LDLSFNNL G IP++LF +++
Sbjct: 254 SSSLDFIKGLKNLTSLVLRNTLISGSIPSYIGEYQSLQTLDLSFNNLIGGIPSSLFKLNN 313
Query: 307 LEYLFLGNNSLSGTLPDQKSENLQKIDLSHNHLSGTFPLWVNSELQMNLAVNNFKFDISN 366
L LFLGNN L+GTLP QKSE LQ IDLS+N +SG+FP W+NS+LQ+NL NNF FD SN
Sbjct: 314 LTALFLGNNRLTGTLPPQKSEKLQIIDLSYNEISGSFPSWLNSDLQLNLVANNFTFDSSN 373
Query: 367 ISVFPGLNCLQRNFTCNRNAPQCKLPSLCCLHPEMR-ADNIVYEGDNSY-LGASA--FVV 422
S+ GLNCLQR+F CN+ PQ S+ C PE+R +D V+E DNS +G ++ + V
Sbjct: 374 SSILEGLNCLQRDFPCNKGTPQYTNFSVKCGGPELRTSDGTVFEADNSITIGTTSALYFV 433
Query: 423 TNTEKWAVSKVGLFNGRE--NASYVLNTQDQVTGTRTPKLYQTSRISAGSLRYYGLGLVN 480
+ E+WAVS VGL+N R N S V QV GT+ PKL++TSRIS GSLRYYGLGLVN
Sbjct: 434 SRMERWAVSNVGLYNDRSEYNTSSVEKALSQVKGTKNPKLFETSRISPGSLRYYGLGLVN 493
Query: 481 GPYNVSLLFAETNFPDPSTERWESRGRRVFDIYVQGTLRWKDFDISKEAGGPNRAIIKNF 540
GPY VSLLFAET F DPST+ W+SRGRRVFDIY+QG L +KDFDIS+EAGG +A+ K F
Sbjct: 494 GPYTVSLLFAETTFKDPSTQTWQSRGRRVFDIYIQGMLEYKDFDISREAGGVEKALEKKF 553
Query: 541 SATVSENHLEIHLFWAGKGTCCIPKQGNYGPAISALSVVSAFKPSVSGLPPSTPGNKNHT 600
ATVSEN+LEIHLFWAGKGTCCIP QG YGP+ISAL+VV P ++ +PP K+ T
Sbjct: 554 KATVSENYLEIHLFWAGKGTCCIPVQGYYGPSISALTVV----PDLTRIPP----KKHKT 605
Query: 601 GLIVGIAVPLGILGLIVISIMFYLWREKDNDDEEV-LVGIGSKPNIFGYAELRSATKDFN 659
GLI+G A GI+ +++ Y+ R+ + +E++ L+ IG K N F AELR+AT+DF+
Sbjct: 606 GLIIGFAAAAGIVSFMLVLAACYMKRKGLHANEDIELLEIGPKLNTFSDAELRTATEDFS 665
Query: 660 RSNKLGEGGYGPVYKVT 676
+NKLG+GG+G VYK T
Sbjct: 666 PANKLGQGGFGTVYKGT 682
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359495325|ref|XP_002270976.2| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g56130-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 796 bits (2055), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 416/678 (61%), Positives = 507/678 (74%), Gaps = 19/678 (2%)
Query: 3 DKHAVRALNSILQQWDAPAVPLWNISGNPCSGSALNATDSEFESPNNNPAIVCNCTFDNG 62
D V ALNS+ +QW+ + WN+SG PCSGSA+N + +F N AI+CNCT+++
Sbjct: 16 DPSEVEALNSLFKQWNMQSTTFWNMSGEPCSGSAIN--EIQFYDEVNKQAIMCNCTYNDN 73
Query: 63 ATCHITKLRVYGLNKKGVIPEELVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSH 122
TCHIT L+V LNK G IPEEL TL YL VL++D+N+FTGPLPSFI NLS++ +LS H
Sbjct: 74 TTCHITHLKVLSLNKTGEIPEELTTLTYLMVLRLDKNYFTGPLPSFIANLSQMQYLSLGH 133
Query: 123 NDFSGPVPRELGNLKELTVLAFGTNNFSGALPPELGNLAKLEQLYIDSCGAGGEIPSTFA 182
N SG +P+ELGNLK+L +L+ G+NNFSG LPPELGNL KLE +YIDS G GEIPSTFA
Sbjct: 134 NGLSGSIPKELGNLKDLIMLSIGSNNFSGFLPPELGNLPKLELIYIDSSGVSGEIPSTFA 193
Query: 183 KLRNMQTLWASDNPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLESLQMSD 242
L+ ++ +ASD P TGKIPDFIGNWTKL++LRFQGNS +GPIPS+ SKL SL SL++SD
Sbjct: 194 NLQRVRDFFASDTPITGKIPDFIGNWTKLQNLRFQGNSLEGPIPSTFSKLTSLVSLRISD 253
Query: 243 IYNVSSSLDFVMSLKNLTDLSLRNALITGTIPFGIGELQMLQILDLSFNNLTGQIPATLF 302
+ NVSSSLDF+ +KNLTDL LRNALI+G+IP IGE L+ LDLSFNNLTGQIP+ LF
Sbjct: 254 LSNVSSSLDFIREMKNLTDLVLRNALISGSIPSSIGEYPSLERLDLSFNNLTGQIPSPLF 313
Query: 303 NIDSLEYLFLGNNSLSGTLPDQKSENLQKIDLSHNHLSGTFPLWVNSELQMNLAVNNFKF 362
N+ +L LFLGNN LSGTLPDQKSE LQ IDL++N +SG+FP W+ S LQ+NL NNF F
Sbjct: 314 NMTNLTSLFLGNNRLSGTLPDQKSEKLQIIDLTYNEISGSFPSWIKSGLQLNLVANNFTF 373
Query: 363 DISNISVFPGLNCLQRNFTCNRNAPQCKLPSLCCLHPEM-RADNIVYEGDNSYLGA--SA 419
D SN S+F GLNCLQRNF CNR+ P ++ C E+ +D VYE DNS G ++
Sbjct: 374 DSSNNSIFEGLNCLQRNFPCNRDTPLYTSFAIKCGGSEVTTSDGTVYEADNSISGTAPTS 433
Query: 420 FVVTNTEKWAVSKVGLFNGRENASYVLNTQDQVTGTRTPKLYQTSRISAGSLRYYGLGLV 479
F V+ TEKW VS VGLF + + NT VTGT TP+L++TSRIS GSLRYYG+GL
Sbjct: 434 FYVSRTEKWGVSNVGLFVDK-----IANTS-LVTGTNTPELFKTSRISPGSLRYYGMGLE 487
Query: 480 NGPYNVSLLFAETNFPDPSTERWESRGRRVFDIYVQGTLRWKDFDISKEAGGPNRAIIKN 539
NGPY VSL FAE DPST+ WES GRRVFDIY+QG L+ DFDISKEAGG +AI K
Sbjct: 488 NGPYIVSLQFAEMILKDPSTKTWESTGRRVFDIYIQGILQLGDFDISKEAGGVQKAIEKK 547
Query: 540 FSATVSENHLEIHLFWAGKGTCCIPKQGNYGPAISALSVVSAFKPSVSGLPPSTPGNKNH 599
F+ATVSEN+LEIHLFWAGKGTCCIP G YGP+ISALSVVSA + ++ P K
Sbjct: 548 FNATVSENYLEIHLFWAGKGTCCIPYDGYYGPSISALSVVSASERTI-------PPEKGK 600
Query: 600 TGLIVGIAVPLGILGLIVISIMFYLWREKDNDDEEV-LVGIGSKPNIFGYAELRSATKDF 658
TGLI GIA+ GIL LIVIS +FY+ R+ + +E++ L IG +P+ F YAELR+AT++F
Sbjct: 601 TGLIAGIAIAAGILSLIVISAVFYIKRKGSDMNEDIELPEIGPRPSTFSYAELRTATENF 660
Query: 659 NRSNKLGEGGYGPVYKVT 676
N NKLGEGG+G VYK T
Sbjct: 661 NAINKLGEGGFGAVYKGT 678
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 866 | ||||||
| TAIR|locus:2205250 | 1032 | AT1G56130 [Arabidopsis thalian | 0.815 | 0.684 | 0.470 | 9.9e-218 | |
| TAIR|locus:2205260 | 1047 | AT1G56120 [Arabidopsis thalian | 0.439 | 0.363 | 0.477 | 5.7e-139 | |
| TAIR|locus:2203718 | 1035 | AT1G53440 [Arabidopsis thalian | 0.784 | 0.656 | 0.346 | 2.8e-137 | |
| TAIR|locus:2019367 | 1078 | AT1G29740 [Arabidopsis thalian | 0.713 | 0.573 | 0.359 | 5.9e-120 | |
| TAIR|locus:2203847 | 1021 | RKF1 "receptor-like kinase in | 0.724 | 0.614 | 0.335 | 8.3e-104 | |
| TAIR|locus:2019317 | 969 | AT1G29730 [Arabidopsis thalian | 0.627 | 0.560 | 0.342 | 2.8e-103 | |
| TAIR|locus:2009630 | 953 | AT1G53420 [Arabidopsis thalian | 0.633 | 0.576 | 0.321 | 5.4e-93 | |
| TAIR|locus:2160791 | 1102 | AT5G63930 [Arabidopsis thalian | 0.452 | 0.355 | 0.316 | 4.3e-53 | |
| TAIR|locus:2139885 | 1013 | AT4G28650 [Arabidopsis thalian | 0.387 | 0.331 | 0.346 | 6.3e-51 | |
| TAIR|locus:2085949 | 1141 | AT3G24240 [Arabidopsis thalian | 0.360 | 0.273 | 0.323 | 6.3e-50 |
| TAIR|locus:2205250 AT1G56130 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1637 (581.3 bits), Expect = 9.9e-218, Sum P(2) = 9.9e-218
Identities = 337/717 (47%), Positives = 455/717 (63%)
Query: 2 HDKHAVRALNSILQQWDAPAVPLWNISGNPCSGSALNATDSEFESPNNNPAIVCNCTFDN 61
H A RALNSI W A WNISG CSG+A++A+ + +P NP I C+C+F N
Sbjct: 38 HPDEA-RALNSIFAAWKIQAPREWNISGELCSGAAIDASVLD-SNPAYNPLIKCDCSFQN 95
Query: 62 GATCHITKLRVYGLNKKGVIPEELVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFS 121
C IT ++VY ++ G IP EL TL YLT L + QN TG LP IGNL+R+ +++F
Sbjct: 96 STICRITNIKVYAIDVVGPIPPELWTLTYLTNLNLGQNVLTGSLPPAIGNLTRMQWMTFG 155
Query: 122 HNDFSGPVPRELGNLKELTVLAFGTNNFSGALPPELGNLAKLEQLYIDSCGAGGEIPSTF 181
N SGPVP+E+G L +L +L +NNFSG++P E+G KL+Q+YIDS G G IP +F
Sbjct: 156 INALSGPVPKEIGLLTDLRLLGISSNNFSGSIPDEIGRCTKLQQMYIDSSGLSGRIPLSF 215
Query: 182 AKLRNMQTLWASDNPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPXXXXXXXXXXXXQMS 241
A L ++ W +D T +IPDFIG+WTKL +LR G GPIP ++
Sbjct: 216 ANLVQLEQAWIADLEVTDQIPDFIGDWTKLTTLRIIGTGLSGPIPSSFSNLTSLTELRLG 275
Query: 242 DIYNVSSSLDFVMSLKNLTDLSLRNALITGTIPFGIGELQMLQILDLSFNNLTGQIPATL 301
DI + SSSLDF+ +K+L+ L LRN +TGTIP IGE L+ +DLSFN L G IPA+L
Sbjct: 276 DISSGSSSLDFIKDMKSLSVLVLRNNNLTGTIPSTIGEHSSLRQVDLSFNKLHGPIPASL 335
Query: 302 FNIDSLEYLFLGNNSLSGTLPDQKSENLQKIDLSHNHLSGTFPLWVN-SELQMNLAVNNF 360
FN+ L +LFLGNN+L+G+ P QK+++L+ +D+S+N LSG+ P WV+ L++NL NNF
Sbjct: 336 FNLSQLTHLFLGNNTLNGSFPTQKTQSLRNVDVSYNDLSGSLPSWVSLPSLKLNLVANNF 395
Query: 361 KFDISNISVFPGLNCLQRNFTCNRNAPQCKLPSLCCLHPEMRA-DNIVYEGDNSYLGASA 419
+ + V PGLNCLQ+NF CNR S+ C PE R+ ++E ++ G ++
Sbjct: 396 TLEGLDNRVLPGLNCLQKNFPCNRGKGIYSDFSINCGGPEKRSVTGALFEREDEDFGPAS 455
Query: 420 FVVTNTEKWAVSKVGLFNGRENASYVLNTQDQVTGTRTPKLYQTSRISAGSLRYYGLGLV 479
F V+ ++WA S VGLF G N Y+ +Q Q T +L+Q++R+SA S+RYYGLGL
Sbjct: 456 FFVSAGQRWAASSVGLFAGSSNNIYIATSQSQFVNTLDSELFQSARLSASSVRYYGLGLE 515
Query: 480 NGPYNVSLLFAETNFPDPSTERWESRGRRVFDIYVQGTLRWKDFDISKEAGGPN-RAIIK 538
NG Y V+L FAE ++ W+ GRR FDIYVQG L KDFD+ + AG RA+ +
Sbjct: 516 NGGYTVTLQFAEIQILGSTSTTWKGLGRRRFDIYVQGRLVEKDFDVRRTAGDSTVRAVQR 575
Query: 539 NFSATVSENHLEIHLFWAGKGTCCIPKQGNYGPAISALSVVSAFKPSVSGLPPSTPGNKN 598
+ A VSENHLE+HLFWAGKGTCCIP QG YGP ISA+S F P+V+ PPS KN
Sbjct: 576 VYKANVSENHLEVHLFWAGKGTCCIPIQGAYGPLISAVSATPDFTPTVANKPPSK--GKN 633
Query: 599 HTGLIVGIAVPLGILGLIVISIMFYLW--REKDNDDEEVLVGIGSKPNIFGYAELRSATK 656
TG IVG+ V +G+L ++ +MF + R++ DDEE+L G+ KP IF Y+EL+SAT+
Sbjct: 634 RTGTIVGVIVGVGLLSILAGVVMFTIRKRRKRYTDDEELL-GMDVKPYIFTYSELKSATQ 692
Query: 657 DFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGR 713
DF+ SNKLGEGG+GPVYK N +A + G K F +VA+ + R
Sbjct: 693 DFDPSNKLGEGGFGPVYKGNLNDGRVVAVKLLSVGSRQGKGQ-FVAEIVAISSVLHR 748
|
|
| TAIR|locus:2205260 AT1G56120 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 919 (328.6 bits), Expect = 5.7e-139, Sum P(2) = 5.7e-139
Identities = 184/385 (47%), Positives = 245/385 (63%)
Query: 8 RALNSILQQWDAPAVPLWNISGNPCSGSALNATDSEFESPNN-NPAIVCNCTFDNGATCH 66
RALNSI W A WNISG CSG A++A S +S + NP I C+C+F N C
Sbjct: 18 RALNSIFAAWKIRAPREWNISGELCSGVAIDA--SVLDSNHAYNPLIKCDCSFQNSTICR 75
Query: 67 ITKLRVYGLNKKGVIPEELVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFS 126
I ++VY ++ G IP EL TL YLT L + QN+ TG L IGNL+R+ +++F N S
Sbjct: 76 INNIKVYAIDVVGPIPPELWTLTYLTNLNLGQNYLTGSLSPAIGNLTRMQWMTFGINALS 135
Query: 127 GPVPRELGNLKELTVLAFGTNNFSGALPPELGNLAKLEQLYIDSCGAGGEIPSTFAKLRN 186
GP+P+E+G L +L +L +NNFSG+LP E+G+ KL+Q+YIDS G G IP +FA
Sbjct: 136 GPIPKEIGLLTDLRLLGISSNNFSGSLPAEIGSCTKLQQMYIDSSGLSGGIPLSFANFVE 195
Query: 187 MQTLWASDNPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPXXXXXXXXXXXXQMSDIYNV 246
++ W D TG+IPDFIG WTKL +LR G GPIP ++ DI N
Sbjct: 196 LEVAWIMDVELTGRIPDFIGFWTKLTTLRILGTGLSGPIPSSFSNLIALTELRLGDISNG 255
Query: 247 SSSLDFVMSLKNLTDLSLRNALITGTIPFGIGELQMLQILDLSFNNLTGQIPATLFNIDS 306
SSSLDF+ +K+L+ L LRN +TGTIP IG LQ +DLSFN L G IPA+LFN+
Sbjct: 256 SSSLDFIKDMKSLSVLVLRNNNLTGTIPSTIGGYTSLQQVDLSFNKLHGPIPASLFNLSR 315
Query: 307 LEYLFLGNNSLSGTLPDQKSENLQKIDLSHNHLSGTFPLWVN-SELQMNLAVNNFKFDIS 365
L +LFLGNN+L+G+LP K ++L +D+S+N LSG+ P WV+ +L++NL NNF +
Sbjct: 316 LTHLFLGNNTLNGSLPTLKGQSLSNLDVSYNDLSGSLPSWVSLPDLKLNLVANNFTLEGL 375
Query: 366 NISVFPGLNCLQRNFTCNRNAPQCK 390
+ V GL+CLQ+NF CNR CK
Sbjct: 376 DNRVLSGLHCLQKNFPCNRGEGICK 400
|
|
| TAIR|locus:2203718 AT1G53440 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1026 (366.2 bits), Expect = 2.8e-137, Sum P(2) = 2.8e-137
Identities = 244/704 (34%), Positives = 383/704 (54%)
Query: 7 VRALNSILQQWDAPAVPLWNISGNPCSGSALN-ATDSEFESPNNNPAIVCNCTFDNGATC 65
V+ L +I ++ V NI C N +S + P +N I C+CTF+ + C
Sbjct: 34 VQTLRTIFRKLQNQTV---NIERTSCLDRKWNFVAESTSKLPTSN--ITCDCTFNASSVC 88
Query: 66 HITKLRVYGLNKKGVIPEELVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDF 125
+T +++ G N +G+IP E L LT + + NF +G +P+ + + L L+ + N
Sbjct: 89 RVTNIQLRGFNLRGIIPPEFGNLTRLTEIDLVLNFLSGTIPTTLSQIP-LEILAVTGNRL 147
Query: 126 SGPVPRELGNLKELTVLAFGTNNFSGALPPELGNLAKLEQLYIDSCGAGGEIPSTFAKLR 185
SGP P +LG + LT + +N F+G LPP LGNL L++L I S G IP + + L+
Sbjct: 148 SGPFPPQLGQITTLTDVIMESNLFTGQLPPNLGNLRSLKRLLISSNNITGRIPESLSNLK 207
Query: 186 NMQTLWASDNPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPXXXXXXXXXXXXQMSDIYN 245
N+ N +GKIPDFIGNWT+L L QG S +GPIP +++D+
Sbjct: 208 NLTNFRIDGNSLSGKIPDFIGNWTRLVRLDLQGTSMEGPIPASISNLKNLTELRITDLRG 267
Query: 246 VSSSLDFVMSLKNLTDLSLRNALITGTIPFGIG-ELQMLQILDLSFNNLTGQIPATLFNI 304
+S + ++ N+ L LRN LI IP IG + ML++LDLS N L G IP T ++
Sbjct: 268 PTSPFPDLQNMTNMERLVLRNCLIREPIPEYIGTSMTMLKLLDLSSNMLNGTIPDTFRSL 327
Query: 305 DSLEYLFLGNNSLSGTLPDQKSENLQKIDLSHNHLSGTFPLWVNSELQMNLAVNNFKFDI 364
++ +++L NNSL+G +P ++ Q IDLS+N+ + L N +L +NL ++++ +
Sbjct: 328 NAFNFMYLNNNSLTGPVPQFILDSKQNIDLSYNNFTQPPTLSCN-QLDVNL-ISSYP-SV 384
Query: 365 SNISVFPGLNCLQRNFTCNRNAPQCKLPSLCCLHPEMRADNIVYEGDNSYLGASAFVVTN 424
+N SV CL+++ C +A L + C ++ D Y D + GAS F +
Sbjct: 385 TNNSV---QWCLRKDLPCPGDAHHSSL-FINCGGNRLKVDKDEYADDLNKRGASTFSSVS 440
Query: 425 TEKWAVSKVGLFNGRENASYVLNTQDQVTGTRTPKLYQTSRISAGSLRYYGLGLVNGPYN 484
E+W S G + G + A+Y+ + TP+ Y+T+R+++ SL+YYGL + G Y
Sbjct: 441 -ERWGYSSSGAWLGNDGATYLATDTFNLINESTPEYYKTARLASQSLKYYGLCMRRGSYK 499
Query: 485 VSLLFAETNFPDPSTERWESRGRRVFDIYVQGTLRWKDFDISKEAGGPNRAIIKNFSAT- 543
V L FAE F + T + S GRR+FDIYVQG L +DF+I++ AGG + ++
Sbjct: 500 VQLYFAEIMFSNDQT--YSSLGRRLFDIYVQGILLERDFNIAQRAGGVGKPFLRQVDEVQ 557
Query: 544 VSENHLEIHLFWAGKGTCCIPKQGNYGPAISALSVVSAFKPSVSGLPPSTPGNKNHTGLI 603
V+ + LEIHL W GKGT IP +G YGP ISA++V FK +G P S N G++
Sbjct: 558 VNGSTLEIHLKWTGKGTNVIPTRGVYGPLISAITVTPNFKVD-TGKPLS---NGVVAGIV 613
Query: 604 VGIAVPLGILGLIVISIMFYLWREKDNDDEEVLVGIGSKPNIFGYAELRSATKDFNRSNK 663
+ V G+L L+++ + YL K+ D+ E L G+ + F +++ AT +F+ NK
Sbjct: 614 IAACVAFGLLVLVILRLTGYLGG-KEVDENEELRGLDLQTGSFTLKQIKRATNNFDPENK 672
Query: 664 LGEGGYGPVYK-VTANSYGYLAPEYAMRGHLTEKADVFSFGVVA 706
+GEGG+GPVYK V A+ + + + + V G+++
Sbjct: 673 IGEGGFGPVYKGVLADGMTIAVKQLSSKSKQGNREFVTEIGMIS 716
|
|
| TAIR|locus:2019367 AT1G29740 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 888 (317.7 bits), Expect = 5.9e-120, Sum P(2) = 5.9e-120
Identities = 239/665 (35%), Positives = 337/665 (50%)
Query: 26 NISGNPCSGSALNATDSEFESPNNNPAIVCNCTFDNGATCHITKLRVYGLNKKGVIPEEL 85
N+S +PC L T + N+ I C+C F+N TCHIT + + G +P E
Sbjct: 60 NLSEDPCLTKTLVITQDVLKEGQNS-TIRCDCHFNNNNTCHITHFVLKTFSLPGRLPPEF 118
Query: 86 VTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKELTVLAFG 145
L+YL + + +N+ G +P +L L +S N +G +P+ LG LT L
Sbjct: 119 SKLRYLEFIDLCRNYLYGSIPMEWASLPYLKSISVCANRLTGDIPKGLGKFINLTQLGLE 178
Query: 146 TNNFSGALPPELGNLAKLEQLYIDSCGAGGEIPSTFAKLRNMQTLWASDNPFTGKIPDFI 205
N FSG +P ELGNL LE L S G +P T A+L+ + L SDN G IP+FI
Sbjct: 179 ANQFSGTIPKELGNLVNLEGLAFSSNQLVGGVPKTLARLKKLTNLRFSDNRLNGSIPEFI 238
Query: 206 GNWTKLKSLRFQGNSFQGPIPXXXXXXXXXXXXQMSDIYNVSSSLDFVMSLKNLTDLSLR 265
GN +KL+ L + + PIP ++SD + + S K+L L LR
Sbjct: 239 GNLSKLQRLELYASGLKDPIPYSIFRLENLIDLRISDTAAGLGQVPLITS-KSLKFLVLR 297
Query: 266 NALITGTIPFGIGELQMLQILDLSFNNLTGQIPATLFNIDSLEYLFLGNNSLSGTLPDQK 325
N +TG IP + +L L LDLSFN LTG++PA + + +Y +L N LSG +
Sbjct: 298 NMNLTGPIPTSLWDLPNLMTLDLSFNRLTGEVPA---DASAPKYTYLAGNMLSGKVESGP 354
Query: 326 SENLQ-KIDLSHNHLSGTFPLWVNSELQMNLAVNNFKFDISNISVFPGLNCLQRNFTCNR 384
IDLS+N+ + W S + N +N + S S+ L C N N
Sbjct: 355 FLTASTNIDLSYNNFT-----WSQSCKERN-NINTYASSRSTNSLTRLLPCSAINLCQNY 408
Query: 385 NAPQCKLPSLCCLHPEMRADN----IVYEGDNSYLGASAFVVTNT--EKWAVSKVGLF-- 436
N + + C P++ +N +YEGDN L SA TN + W S G F
Sbjct: 409 N----RSLHINCGGPDVTIENSRGRFLYEGDNYGLTGSA---TNYYGKNWGFSNTGDFMD 461
Query: 437 NGRENASYVLNTQDQVTGTRTPKLYQTSRISAGSLRYYGLGLVNGPYNVSLLFAETNFPD 496
+ +Y ++++ V+ + P LYQ +R S SL Y+ + NG YNV L FAE F D
Sbjct: 462 DAITEDTYTVSSESAVSA-KYPDLYQNARRSPLSLAYFAICFENGSYNVKLHFAEIQFSD 520
Query: 497 PSTERWESRGRRVFDIYVQGTLRWKDFDISKEAGGPNRAIIKNFSATVSENHLEIHLFWA 556
E + +RVF+IYVQG L W+DF I +EA G ++ +IK + TV++N LEI L+WA
Sbjct: 521 E--EPFSRLAKRVFNIYVQGKLIWEDFSIREEANGTHKEVIKEVNTTVTDNTLEIRLYWA 578
Query: 557 GKGTCCIPKQGNYGPAISALSVVSAFKPSVSGLPPST-PGNKN-HTG----LIVGIAVPL 610
GKGT IPK+GNYG ISA+SV + + S G+P P K H LI+GIA +
Sbjct: 579 GKGTTIIPKRGNYGSLISAISVCPSSE-SECGVPVQIHPVTKQQHKQRKYHLILGIAALI 637
Query: 611 GILGLIVISIMFYLWRE-KDNDDEEVLVGIGSKPNIFGYAELRSATKDFNRSNKLGEGGY 669
L +++ ++ WR N D G K F +L+ AT DFN NK+GEGG+
Sbjct: 638 VSLSFLILGALY--WRICVSNAD-------GEKRGSFSLRQLKVATDDFNPLNKIGEGGF 688
Query: 670 GPVYK 674
G VYK
Sbjct: 689 GSVYK 693
|
|
| TAIR|locus:2203847 RKF1 "receptor-like kinase in flowers 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 818 (293.0 bits), Expect = 8.3e-104, Sum P(2) = 8.3e-104
Identities = 221/659 (33%), Positives = 325/659 (49%)
Query: 25 WNISGNPCSGSALNATDSEFESPNNNPAIVCNCTFDNGATCHITKLRVYGLNKKGVIPEE 84
W C + T++ P I C C+ N CH+ K N G +P+
Sbjct: 62 WKFDAENCKIEMVGLTETP--PPTAKQEIECECSPTNDTDCHVVKFAFKDHNLPGTLPQ- 118
Query: 85 LVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKELTVLAF 144
+V L YL + + N+ G LP + S L F+S N SG +P+E GN LT L
Sbjct: 119 IVKLPYLREIDLAYNYINGTLPREWAS-SNLTFISLLVNRLSGEIPKEFGN-SSLTYLDL 176
Query: 145 GTNNFSGALPPELGNLAKLEQLYIDSCGAGGEIPSTFAKLRNMQTLWASDNPFTGKIPDF 204
+N FSG +P ELGNL L++L + S G +P++ A+L+NM +D +G IP +
Sbjct: 177 ESNAFSGTIPQELGNLVHLKKLLLSSNKLTGTLPASLARLQNMTDFRINDLQLSGTIPSY 236
Query: 205 IGNWTKLKSLRFQGNSFQGPIPXXXXXXXXXXXXQMSDIYNVSSSLDFVMSLKNLTDLSL 264
I NW +L+ L + GPIP ++SDI + ++ LT + L
Sbjct: 237 IQNWKQLERLEMIASGLTGPIPSVISVLSNLVNLRISDIRGPVQPFPSLKNVTGLTKIIL 296
Query: 265 RNALITGTIPFGIGELQMLQILDLSFNNLTGQIPATLFNIDSLEYLFLGNNSLSGTLPDQ 324
+N I+G IP + L+ L+ LDLSFN L G IP+ ++L ++ L N L G PD+
Sbjct: 297 KNCNISGQIPTYLSHLKELETLDLSFNKLVGGIPS-FAQAENLRFIILAGNMLEGDAPDE 355
Query: 325 KSENLQKIDLSHNHLSGTFPLWVNSELQMNLAVNNFKF-DISNISVFPGLNCLQRNFTCN 383
+ +DLS+N+L P MNL +N F+ S F L C+ ++F C
Sbjct: 356 LLRDGITVDLSYNNLKWQSPESRACRPNMNLNLNLFQSTSTKKSSKF--LPCI-KDFKCP 412
Query: 384 RNAPQCKLPSLCC---LHPEMRADNIVYEGDNSYLGASA-FVVTNTEKWAVSKVGLFNGR 439
R + C L C ++ + + +YEGD + G +A + + W S G F
Sbjct: 413 RYS-SC-LHVNCGGSDMYVKEKKTKELYEGDGNVEGGAAKYFLKPDANWGFSSTGDFMDD 470
Query: 440 ENASYVLNTQDQVTGTRTPKLYQTSRISAGSLRYYGLGLVNGPYNVSLLFAETNFPDPST 499
N T V + LY+++RI+ SL Y+ L NG Y ++L FAE F +
Sbjct: 471 NNFQNTRFTMF-VPASNQSDLYKSARIAPVSLTYFHACLENGNYTINLDFAEIRFTND-- 527
Query: 500 ERWESRGRRVFDIYVQGTLRWKDFDISKEAGGPNRAIIKNFSATVSENHLEIHLFWAGKG 559
E + GRR+FDIY+Q L KDF+I EA G IIK +A V+ + L I L WAGKG
Sbjct: 528 ENYNRLGRRLFDIYIQEKLVAKDFNIMDEAKGAQTPIIKPLTAYVTNHFLTIRLSWAGKG 587
Query: 560 TCCIPKQGNYGPAISALSVVSAFKPSVSGLPPSTPGNKNHTGLIVGIAVP---LGILGLI 616
T IP +G YGP ISA+S+VS KP +PG + +GI P + ILG +
Sbjct: 588 TTRIPTRGVYGPIISAISIVSDSKPCERPKTGMSPG----AYIAIGIGAPCLIIFILGFL 643
Query: 617 -VISIMFYLWREKDNDDEEVLVGIGSKPNIFGYAELRSATKDFNRSNKLGEGGYGPVYK 674
+ + R++ + EE L G+ F +++ AT DFN +NK+GEGG+G V+K
Sbjct: 644 WICGCLPRCGRQRKDPYEEELPS-GT----FTLRQIKFATDDFNPTNKIGEGGFGAVFK 697
|
|
| TAIR|locus:2019317 AT1G29730 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 738 (264.8 bits), Expect = 2.8e-103, Sum P(2) = 2.8e-103
Identities = 196/573 (34%), Positives = 286/573 (49%)
Query: 26 NISGNPCSGSALNATDSEFESPNNNPAIVCNCTFDNGATCHITKLRVYGLNKKGVIPEEL 85
N+S +PC L + + N+ I C+C F+N +TCHI + N G +P L
Sbjct: 60 NLSEDPCLTKTLVISQGVLKEGQNS-TIRCDCHFNNYSTCHIKHFVLQKFNLPGRLPPML 118
Query: 86 VTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKELTVLAFG 145
++L + + N+ G +P +L L +S N SG +P+ LG LT+L
Sbjct: 119 YKFRHLESIDLYNNYLYGSIPMEWASLPYLKSISVCANRLSGDIPKGLGKFINLTLLVLE 178
Query: 146 TNNFSGALPPELGNLAKLEQLYIDSCGAGGEIPSTFAKLRNMQTLWASDNPFTGKIPDFI 205
N FSG +P ELGNL L+ L + S G +P T AKL + L SDN G IP+FI
Sbjct: 179 ANQFSGTIPKELGNLVNLQGLGLSSNQLVGGLPKTLAKLTKLTNLHLSDNRLNGSIPEFI 238
Query: 206 GNWTKLKSLRFQGNSFQGPIPXXXXXXXXXXXXQMSDIYNVSSSLDFVMSLKNLTDLSLR 265
G KL+ L + +GPIP ++SD + + S +L L LR
Sbjct: 239 GKLPKLQRLELYASGLRGPIPDSIFHLENLIDVRISDTVAGLGHVPQITST-SLKYLVLR 297
Query: 266 NALITGTIPFGIGELQMLQILDLSFNNLTGQIPATLFNIDSLEYLFLGNNSLSGTLPDQK 325
N ++G IP I +L L LDLSFN LTG+IPA + +Y +L N LSG +
Sbjct: 298 NINLSGPIPTSIWDLPSLMTLDLSFNRLTGEIPAYA---TAPKYTYLAGNMLSGKVETGA 354
Query: 326 SENLQ-KIDLSHNHLSGTFPLWVNSELQMNLAVNNFKFDISNISVFPGLNCLQRNFTCNR 384
IDLS+N+ + + P+ + + N +N ++ S + L C C
Sbjct: 355 FLTASTNIDLSYNNFTWS-PM---CKERKN--INTYESSHSKNRLTRLLPCSAIK-QCQN 407
Query: 385 NAPQCKLPSLCCLHPEMRADN----IVYEGDNSYLGASAFVVTN--TEKWAVSKVGLF-- 436
+ + C P++ +N +YEGDN L SA TN + W S G F
Sbjct: 408 YSRSLHIN---CGGPDVTIENSRGRFLYEGDNYGLTGSA---TNYYRKNWGYSNTGDFMD 461
Query: 437 NGRENASYVLNTQDQVTGTRTPKLYQTSRISAGSLRYYGLGLVNGPYNVSLLFAETNFPD 496
+ +Y ++++ V+ + P LYQ +R S SL YY NG YNV L FAE F D
Sbjct: 462 DAITEDTYTVSSESAVSA-KYPDLYQNARRSPLSLAYYAFCFENGSYNVKLHFAEIQFSD 520
Query: 497 PSTERWESRGRRVFDIYVQGTLRWKDFDISKEAGGPNRAIIKNFSATVSENHLEIHLFWA 556
E + +RVF+IY+QG L W+DF I +EA G ++ +I+ + TV++N LEI L+WA
Sbjct: 521 --VEPYTKLAKRVFNIYIQGKLIWEDFSIREEANGTHKEVIREVNTTVTDNTLEIRLYWA 578
Query: 557 GKGTCCIPKQGNYGPAISALSVVSAFKPSVSGL 589
GKGT IP++G YG ISA+SV + + G+
Sbjct: 579 GKGTMIIPQRGYYGSLISAVSVCPSSESECGGM 611
|
|
| TAIR|locus:2009630 AT1G53420 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 649 (233.5 bits), Expect = 5.4e-93, Sum P(2) = 5.4e-93
Identities = 189/587 (32%), Positives = 283/587 (48%)
Query: 103 GPLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKELTVLAFGTNNFSGALPPELGNLAK 162
G LP + L L + S N +G +P E G L + + G N +G +P E GN+
Sbjct: 77 GSLPKELVGLPLLQEIDLSRNYLNGSIPPEWGVLPLVNIWLLG-NRLTGPIPKEFGNITT 135
Query: 163 LEQLYIDSCGAGGEIPSTFAKLRNMQTLWASDNPFTGKIPDFIGNWTKLKSLRFQGNSFQ 222
L L +++ GE+P L N+Q + S N F G+IP T L+ R N
Sbjct: 136 LTSLVLEANQLSGELPLELGNLPNIQQMILSSNNFNGEIPSTFAKLTTLRDFRVSDNQLS 195
Query: 223 GPIPXXXXXXXXXXXXQMSDIYNVSSSLDFVMSLKNLTDLSLRNALITGT-IPFG-IGEL 280
G IP + V + SL L DL + + + G PF + +
Sbjct: 196 GTIPDFIQKWTKLERLFIQASGLVGPIPIAIASLVELKDLRISD--LNGPESPFPQLRNI 253
Query: 281 QMLQILDLSFNNLTGQIPATLFNIDSLEYLFLGNNSLSGTLPDQKSENLQK---IDLSHN 337
+ ++ L L NLTG +P L I S ++L L N LSG +P+ NL+ I + N
Sbjct: 254 KKMETLILRNCNLTGDLPDYLGKITSFKFLDLSFNKLSGAIPNTYI-NLRDGGYIYFTGN 312
Query: 338 HLSGTFPLW-VNSELQMNLAVNNFKFDISN-ISVFPG-LNCLQRNFTCNRNAPQCKLPSL 394
L+G+ P W VN +++L+ NNF D +N + + L+C+ RN+ C + +
Sbjct: 313 MLNGSVPDWMVNKGYKIDLSYNNFSVDPTNAVCKYNNVLSCM-RNYQCPKTFNALHIN-- 369
Query: 395 CCLHPEMRADNIVYEGDNSYLGASAFVVTNTEKWAVSKVGLFNGRENASYVLNTQDQVTG 454
C EM + +YE D S + N W + VG+F ++ + + +
Sbjct: 370 -CGGDEMSINGTIYESDKYDRLESWYESRNG--WFSNNVGVFVDDKHVPERVTIESNSSE 426
Query: 455 TRTPK--LYQTSRISAGSLRYYGLGLVNGPYNVSLLFAETNFPDPSTERWESRGRRVFDI 512
LY +RISA SL YY L L NG YNV+L FAE F ++S GRR FDI
Sbjct: 427 LNVVDFGLYTQARISAISLTYYALCLENGNYNVNLHFAEIMFN--GNNNYQSLGRRFFDI 484
Query: 513 YVQGTLRWKDFDISKEAGGPNRAIIKNFSATVSENHLEIHLFWAGKGTCCIPKQGNYGPA 572
Y+Q L KDF+I+KEA +IK F + + LEI L+WAG+GT IPK+ YGP
Sbjct: 485 YIQRKLEVKDFNIAKEAKDVGNVVIKTFPVEIKDGKLEIRLYWAGRGTTVIPKERVYGPL 544
Query: 573 ISALSVVSAFKPSVSGLPPSTPGNKNHTGLIVGIAVPLGILGLIVISIMF-YLWRE---- 627
ISA+SV S+ PS P N TG + + V IL + ++ ++F LW++
Sbjct: 545 ISAISVDSSVNPS--------PRNGMSTGTLHTLVV---ILSIFIVFLVFGTLWKKGYLR 593
Query: 628 KDNDDEEVLVGIGSKPNIFGYAELRSATKDFNRSNKLGEGGYGPVYK 674
+ E+ + F +++ AT +F+ +N++GEGG+GPVYK
Sbjct: 594 SKSQMEKDFKSLELMIASFSLRQIKIATNNFDSANRIGEGGFGPVYK 640
|
|
| TAIR|locus:2160791 AT5G63930 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 390 (142.3 bits), Expect = 4.3e-53, Sum P(3) = 4.3e-53
Identities = 130/411 (31%), Positives = 191/411 (46%)
Query: 14 LQQWDA-PAVPL-WNISGNPCSGSALNATDSEFESPNNNPAIVCNCTFDN-GATCHITKL 70
L+ W++ +VP W +G CS + +D E S N + ++ + G H+ +L
Sbjct: 48 LRNWNSNDSVPCGW--TGVMCSNYS---SDPEVLSLNLSSMVLSGKLSPSIGGLVHLKQL 102
Query: 71 RVYGLNKKGVIPEELVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVP 130
+ G IP+E+ L +LK++ N F G +P IG L L L +N SG +P
Sbjct: 103 DLSYNGLSGKIPKEIGNCSSLEILKLNNNQFDGEIPVEIGKLVSLENLIIYNNRISGSLP 162
Query: 131 RELGNLKELTVLAFGTNNFSGALPPELGNLAKLEQLYIDSCGAGGEIPSTFAKLRNMQTL 190
E+GNL L+ L +NN SG LP +GNL +L G +PS ++ L
Sbjct: 163 VEIGNLLSLSQLVTYSNNISGQLPRSIGNLKRLTSFRAGQNMISGSLPSEIGGCESLVML 222
Query: 191 WASDNPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPXXXXXXXXXXXXQMSDIYNVSSSL 250
+ N +G++P IG KL + N F G IP + V
Sbjct: 223 GLAQNQLSGELPKEIGMLKKLSQVILWENEFSGFIPREISNCTSLETLALYKNQLVGPIP 282
Query: 251 DFVMSLKNLTDLSL-RNALITGTIPFGIGELQMLQILDLSFNNLTGQIPATLFNIDSLEY 309
+ L++L L L RN L GTIP IG L +D S N LTG+IP L NI+ LE
Sbjct: 283 KELGDLQSLEFLYLYRNGL-NGTIPREIGNLSYAIEIDFSENALTGEIPLELGNIEGLEL 341
Query: 310 LFLGNNSLSGTLPDQKS--ENLQKIDLSHNHLSGTFPLWVNSELQMNLAVNNFKFDISNI 367
L+L N L+GT+P + S +NL K+DLS N L+G PL L+ + F+ +S
Sbjct: 342 LYLFENQLTGTIPVELSTLKNLSKLDLSINALTGPIPLGFQY-LRGLFMLQLFQNSLSG- 399
Query: 368 SVFPGLNCLQRNFTCNR--NAPQCKLPSLCCLHPEMRADNIVYEGDNSYLG 416
++ P L + + N ++PS CLH M N+ G N+ G
Sbjct: 400 TIPPKLGWYSDLWVLDMSDNHLSGRIPSYLCLHSNMIILNL---GTNNLSG 447
|
|
| TAIR|locus:2139885 AT4G28650 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 427 (155.4 bits), Expect = 6.3e-51, Sum P(2) = 6.3e-51
Identities = 122/352 (34%), Positives = 180/352 (51%)
Query: 67 ITKLRVYGLNKKGVIPEELVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFS 126
+ L G N G + E+L L L VL + NFF G LPS NL +L FL S N+ +
Sbjct: 142 LVHLNASGNNLSGNLTEDLGNLVSLEVLDLRGNFFQGSLPSSFKNLQKLRFLGLSGNNLT 201
Query: 127 GPVPRELGNLKELTVLAFGTNNFSGALPPELGNLAKLEQLYIDSCGAGGEIPSTFAKLRN 186
G +P LG L L G N F G +PPE GN+ L+ L + GEIPS KL++
Sbjct: 202 GELPSVLGQLPSLETAILGYNEFKGPIPPEFGNINSLKYLDLAIGKLSGEIPSELGKLKS 261
Query: 187 MQTLWASDNPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPXXXXXXXXXXXXQMSDIYNV 246
++TL +N FTG IP IG+ T LK L F N+ G IP + +
Sbjct: 262 LETLLLYENNFTGTIPREIGSITTLKVLDFSDNALTGEIPMEITKLKNLQLLNLMR-NKL 320
Query: 247 SSSLD-FVMSLKNLTDLSLRNALITGTIPFGIGELQMLQILDLSFNNLTGQIPATLFNID 305
S S+ + SL L L L N ++G +P +G+ LQ LD+S N+ +G+IP+TL N
Sbjct: 321 SGSIPPAISSLAQLQVLELWNNTLSGELPSDLGKNSPLQWLDVSSNSFSGEIPSTLCNKG 380
Query: 306 SLEYLFLGNNSLSGTLPDQKS--ENLQKIDLSHNHLSGTFPLWVNS--ELQ-MNLAVNNF 360
+L L L NN+ +G +P S ++L ++ + +N L+G+ P+ +LQ + LA N
Sbjct: 381 NLTKLILFNNTFTGQIPATLSTCQSLVRVRMQNNLLNGSIPIGFGKLEKLQRLELAGNRL 440
Query: 361 KFDI-SNISVFPGLNCLQRNFTCNRNAPQCKLPS-LCCLH---PEMRADNIV 407
I +IS L+ + +F+ RN + LPS + +H + ADN +
Sbjct: 441 SGGIPGDISDSVSLSFI--DFS--RNQIRSSLPSTILSIHNLQAFLVADNFI 488
|
|
| TAIR|locus:2085949 AT3G24240 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 366 (133.9 bits), Expect = 6.3e-50, Sum P(2) = 6.3e-50
Identities = 106/328 (32%), Positives = 154/328 (46%)
Query: 60 DNGATCHITKLRVYGLNKKGVIPEELVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLS 119
D G + L +Y + G IP E+ L L L + QN G +P IGN S L +
Sbjct: 269 DLGNCSELVDLFLYENSLSGSIPREIGQLTKLEQLFLWQNSLVGGIPEEIGNCSNLKMID 328
Query: 120 FSHNDFSGPVPRELGNLKELTVLAFGTNNFSGALPPELGNLAKLEQLYIDSCGAGGEIPS 179
S N SG +P +G L L N FSG++P + N + L QL +D G IPS
Sbjct: 329 LSLNLLSGSIPSSIGRLSFLEEFMISDNKFSGSIPTTISNCSSLVQLQLDKNQISGLIPS 388
Query: 180 TFAKLRNMQTLWASDNPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPXXXXXXXXXXXXQ 239
L + +A N G IP + + T L++L NS G IP
Sbjct: 389 ELGTLTKLTLFFAWSNQLEGSIPPGLADCTDLQALDLSRNSLTGTIPSGLFMLR-----N 443
Query: 240 MSDIYNVSSSLD-FV-MSLKNLTDL-SLRNAL--ITGTIPFGIGELQMLQILDLSFNNLT 294
++ + +S+SL F+ + N + L LR ITG IP GIG L+ + LD S N L
Sbjct: 444 LTKLLLISNSLSGFIPQEIGNCSSLVRLRLGFNRITGEIPSGIGSLKKINFLDFSSNRLH 503
Query: 295 GQIPATLFNIDSLEYLFLGNNSLSGTLPDQKSE--NLQKIDLSHNHLSGTFPLWVNSELQ 352
G++P + + L+ + L NNSL G+LP+ S LQ +D+S N SG P + +
Sbjct: 504 GKVPDEIGSCSELQMIDLSNNSLEGSLPNPVSSLSGLQVLDVSANQFSGKIPASLGRLVS 563
Query: 353 MN---LAVNNFKFDI-SNISVFPGLNCL 376
+N L+ N F I +++ + GL L
Sbjct: 564 LNKLILSKNLFSGSIPTSLGMCSGLQLL 591
|
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | gw1.III.143.1 | hypothetical protein (941 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 866 | |||
| pfam11721 | 164 | pfam11721, Malectin, Di-glucose binding within end | 1e-50 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 1e-37 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 2e-37 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 2e-35 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 7e-34 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 3e-24 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 1e-16 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 5e-16 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 2e-12 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 2e-10 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 4e-10 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 9e-10 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 1e-09 | |
| COG4886 | 394 | COG4886, COG4886, Leucine-rich repeat (LRR) protei | 2e-09 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 1e-08 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 4e-08 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 5e-08 | |
| pfam13855 | 60 | pfam13855, LRR_8, Leucine rich repeat | 9e-08 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 2e-06 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 1e-05 | |
| COG4886 | 394 | COG4886, COG4886, Leucine-rich repeat (LRR) protei | 1e-05 | |
| cd00180 | 215 | cd00180, PKc, Catalytic domain of Protein Kinases | 4e-04 | |
| smart00220 | 254 | smart00220, S_TKc, Serine/Threonine protein kinase | 0.002 | |
| cd05061 | 288 | cd05061, PTKc_InsR, Catalytic domain of the Protei | 0.002 | |
| cd00192 | 262 | cd00192, PTKc, Catalytic domain of Protein Tyrosin | 0.003 | |
| pfam07714 | 258 | pfam07714, Pkinase_Tyr, Protein tyrosine kinase | 0.004 | |
| cd00116 | 319 | cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo | 0.004 |
| >gnl|CDD|221187 pfam11721, Malectin, Di-glucose binding within endoplasmic reticulum | Back alignment and domain information |
|---|
Score = 174 bits (444), Expect = 1e-50
Identities = 76/185 (41%), Positives = 94/185 (50%), Gaps = 31/185 (16%)
Query: 396 CLHPEMR-ADNIVYEGDNSY-LGASAFVVTNTEKWAVSKVGLFNGRENASYVLNTQDQVT 453
C PE +D I YE D + G++ + V++T N +
Sbjct: 7 CGGPEHTDSDGITYEADTYFTGGSADYYVSDT---------------------NGSSSIA 45
Query: 454 GTRTPKLYQTSRISAGSLRYYGLGLVNGPYNVSLLFAETNFPDPSTERWESRGRRVFDIY 513
GT P+LYQT R S S YY L NG Y V L FAE F + GRRVFD+Y
Sbjct: 46 GTTDPELYQTERYSPSSFSYYIPCLENGNYTVILHFAEIYFGED------GLGRRVFDVY 99
Query: 514 VQGTLRWKDFDISKEAGGPNRAIIKNF-SATVSENHLEIHLFWAGKGTCCIPKQGNYG-P 571
VQG L KDFDI EAGG + K + TV++ LEIH +WAGKGT IP +G YG P
Sbjct: 100 VQGKLVLKDFDIVAEAGGKGKTAHKEYIPVTVTDGTLEIHFYWAGKGTLLIPFRGVYGNP 159
Query: 572 AISAL 576
ISA+
Sbjct: 160 KISAI 164
|
Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan. It carries a signal peptide from residues 1-26, a C-terminal transmembrane helix from residues 255-274, and a highly conserved central part of approximately 190 residues followed by an acidic, glutamate-rich region. Carbohydrate-binding is mediated by the four aromatic residues, Y67, Y89, Y116, and F117 and the aspartate at D186. NMR-based ligand-screening studies has shown binding of the protein to maltose and related oligosaccharides, on the basis of which the protein has been designated "malectin", and its endogenous ligand is found to be Glc2-high-mannose N-glycan. Length = 164 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 151 bits (384), Expect = 1e-37
Identities = 97/293 (33%), Positives = 144/293 (49%), Gaps = 28/293 (9%)
Query: 76 NKKGVIPEELVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRELGN 135
N G IP L L+ L L + QN +GP+P I +L +L+ L S N SG +P +
Sbjct: 247 NLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQ 306
Query: 136 LKELTVLAFGTNNFSGALPPELGNLAKLEQLYIDSCGAGGEIPSTFAKLRNMQTLWASDN 195
L+ L +L +NNF+G +P L +L +L+ L + S GEIP K N+ L S N
Sbjct: 307 LQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTN 366
Query: 196 PFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLESLQMSDIYNVSSSLDFVMS 255
TG+IP+ + + L L NS +G IP SL SL +++ D
Sbjct: 367 NLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQD------------- 413
Query: 256 LKNLTDLSLRNALITGTIPFGIGELQMLQILDLSFNNLTGQIPATLFNIDSLEYLFLGNN 315
N+ +G +P +L ++ LD+S NNL G+I + +++ SL+ L L N
Sbjct: 414 ----------NSF-SGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARN 462
Query: 316 SLSGTLPDQ-KSENLQKIDLSHNHLSGTFPLWVN--SEL-QMNLAVNNFKFDI 364
G LPD S+ L+ +DLS N SG P + SEL Q+ L+ N +I
Sbjct: 463 KFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEI 515
|
Length = 968 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 151 bits (382), Expect = 2e-37
Identities = 104/328 (31%), Positives = 150/328 (45%), Gaps = 11/328 (3%)
Query: 76 NKKGVIPEELVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRELGN 135
N G IP + L L + N +G +P+ IG+ S L L N G +P L N
Sbjct: 129 NFTGSIPRGSIPN--LETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTN 186
Query: 136 LKELTVLAFGTNNFSGALPPELGNLAKLEQLYIDSCGAGGEIPSTFAKLRNMQTLWASDN 195
L L L +N G +P ELG + L+ +Y+ GEIP L ++ L N
Sbjct: 187 LTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYN 246
Query: 196 PFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLESLQMSDIYNVSSSLDFVMS 255
TG IP +GN L+ L N GPIP S+ L L SL +SD + V+
Sbjct: 247 NLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQ 306
Query: 256 LKNLTDLSLRNALITGTIPFGIGELQMLQILDLSFNNLTGQIPATLFNIDSLEYLFLGNN 315
L+NL L L + TG IP + L LQ+L L N +G+IP L ++L L L N
Sbjct: 307 LQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTN 366
Query: 316 SLSGTLPDQ--KSENLQKIDLSHNHLSGTFPLWV---NSELQMNLAVNNFKFDISN-ISV 369
+L+G +P+ S NL K+ L N L G P + S ++ L N+F ++ + +
Sbjct: 367 NLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTK 426
Query: 370 FPGLNCL---QRNFTCNRNAPQCKLPSL 394
P + L N N+ + +PSL
Sbjct: 427 LPLVYFLDISNNNLQGRINSRKWDMPSL 454
|
Length = 968 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 144 bits (366), Expect = 2e-35
Identities = 99/292 (33%), Positives = 138/292 (47%), Gaps = 27/292 (9%)
Query: 79 GVIPEELVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKE 138
G IPE ++ LQ L +L + N FTG +P + +L RL L N FSG +P+ LG
Sbjct: 298 GEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNN 357
Query: 139 LTVLAFGTNNFSGALPPEL---GNLAK---------------------LEQLYIDSCGAG 174
LTVL TNN +G +P L GNL K L ++ +
Sbjct: 358 LTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFS 417
Query: 175 GEIPSTFAKLRNMQTLWASDNPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLAS 234
GE+PS F KL + L S+N G+I + L+ L N F G +P S
Sbjct: 418 GELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDS-FGSKR 476
Query: 235 LESLQMSDIYNVSSSLDFVMSLKNLTDLSLRNALITGTIPFGIGELQMLQILDLSFNNLT 294
LE+L +S + + SL L L L ++G IP + + L LDLS N L+
Sbjct: 477 LENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLS 536
Query: 295 GQIPATLFNIDSLEYLFLGNNSLSGTLPDQ--KSENLQKIDLSHNHLSGTFP 344
GQIPA+ + L L L N LSG +P E+L ++++SHNHL G+ P
Sbjct: 537 GQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLP 588
|
Length = 968 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 139 bits (353), Expect = 7e-34
Identities = 109/341 (31%), Positives = 158/341 (46%), Gaps = 66/341 (19%)
Query: 49 NNPAIVCNCTFDNGATC----HITKLRVYGLNKKGVIPEELVTLQYLTVLKIDQNFFTGP 104
N+ A VC G TC + + + G N G I + L Y+ + + N +GP
Sbjct: 52 NSSADVCLWQ---GITCNNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGP 108
Query: 105 LPSFIGNLS-RLMFLSFSHNDFSGPVPRELGNLKELTVLAFGTNNFSGALPPELGNLAKL 163
+P I S L +L+ S+N+F+G +PR G++ L L N SG +P ++G+ + L
Sbjct: 109 IPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSL 166
Query: 164 EQLYIDSCGAGGEIPSTFAKLRNMQTLWASDNPFTGKIPDFIGNWTKLKSLRFQGNSFQG 223
+ L + GG N GKIP+ + N T L+ L N G
Sbjct: 167 KVLDL-----GG-------------------NVLVGKIPNSLTNLTSLEFLTLASNQLVG 202
Query: 224 PIPSSLSKLASLESLQMSDIYNVSSSLDFVMSLKNLTDLSLRNALITGTIPFGIGELQML 283
IP L ++ SL+ + + YN NL +G IP+ IG L L
Sbjct: 203 QIPRELGQMKSLKWIYLG--YN------------NL----------SGEIPYEIGGLTSL 238
Query: 284 QILDLSFNNLTGQIPATLFNIDSLEYLFLGNNSLSGTLPDQ--KSENLQKIDLSHNHLSG 341
LDL +NNLTG IP++L N+ +L+YLFL N LSG +P + L +DLS N LSG
Sbjct: 239 NHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSG 298
Query: 342 TFPLWVNSELQ----MNLAVNNFKFDIS-NISVFPGLNCLQ 377
P V +LQ ++L NNF I ++ P L LQ
Sbjct: 299 EIPELV-IQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQ 338
|
Length = 968 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 109 bits (273), Expect = 3e-24
Identities = 72/257 (28%), Positives = 116/257 (45%), Gaps = 49/257 (19%)
Query: 66 HITKLRVYGLNKKGVIPEELVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDF 125
++ KL ++ + +G IP+ L + L +++ N F+G LPS L + FL S+N+
Sbjct: 381 NLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNL 440
Query: 126 SGPVPRELGNLKELTVLAFGTNNFSGALPPELGNLAKLEQLYIDSCGAGGEIPSTFAKLR 185
G + ++ L +L+ N F G LP DS G+ +
Sbjct: 441 QGRINSRKWDMPSLQMLSLARNKFFGGLP--------------DSFGS-----------K 475
Query: 186 NMQTLWASDNPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLESLQMSDIYN 245
++ L S N F+G +P +G+ ++L L+ N G IP LS
Sbjct: 476 RLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELS--------------- 520
Query: 246 VSSSLDFVMSLKNLTDLSLRNALITGTIPFGIGELQMLQILDLSFNNLTGQIPATLFNID 305
S K L L L + ++G IP E+ +L LDLS N L+G+IP L N++
Sbjct: 521 ---------SCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVE 571
Query: 306 SLEYLFLGNNSLSGTLP 322
SL + + +N L G+LP
Sbjct: 572 SLVQVNISHNHLHGSLP 588
|
Length = 968 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 84.5 bits (209), Expect = 1e-16
Identities = 53/143 (37%), Positives = 76/143 (53%), Gaps = 1/143 (0%)
Query: 91 LTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKELTVLAFGTNNFS 150
L +L + +N F G LP G+ RL L S N FSG VPR+LG+L EL L N S
Sbjct: 454 LQMLSLARNKFFGGLPDSFGS-KRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLS 512
Query: 151 GALPPELGNLAKLEQLYIDSCGAGGEIPSTFAKLRNMQTLWASDNPFTGKIPDFIGNWTK 210
G +P EL + KL L + G+IP++F+++ + L S N +G+IP +GN
Sbjct: 513 GEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVES 572
Query: 211 LKSLRFQGNSFQGPIPSSLSKLA 233
L + N G +PS+ + LA
Sbjct: 573 LVQVNISHNHLHGSLPSTGAFLA 595
|
Length = 968 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 82.6 bits (204), Expect = 5e-16
Identities = 55/180 (30%), Positives = 84/180 (46%), Gaps = 1/180 (0%)
Query: 62 GATCHITKLRVYGLNKKGVIPEELVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFS 121
GA + ++R+ + G +P E L + L I N G + S ++ L LS +
Sbjct: 401 GACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLA 460
Query: 122 HNDFSGPVPRELGNLKELTVLAFGTNNFSGALPPELGNLAKLEQLYIDSCGAGGEIPSTF 181
N F G +P G+ K L L N FSGA+P +LG+L++L QL + GEIP
Sbjct: 461 RNKFFGGLPDSFGS-KRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDEL 519
Query: 182 AKLRNMQTLWASDNPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLESLQMS 241
+ + + +L S N +G+IP L L N G IP +L + SL + +S
Sbjct: 520 SSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNIS 579
|
Length = 968 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 70.2 bits (172), Expect = 2e-12
Identities = 44/157 (28%), Positives = 69/157 (43%), Gaps = 24/157 (15%)
Query: 7 VRALNSILQQWDAPAVPLWNISGNPCSGSALNATDSEFESPNNNPAIVCNCTFDNGATCH 66
V AL ++ P WN G+PC P +P +C FD+
Sbjct: 374 VSALQTLKSSLGLPLRFGWN--GDPCV-------------PQQHPWSGADCQFDSTKG-- 416
Query: 67 ITKLRVYGLNK-----KGVIPEELVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFS 121
K + GL +G IP ++ L++L + + N G +P +G+++ L L S
Sbjct: 417 --KWFIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLS 474
Query: 122 HNDFSGPVPRELGNLKELTVLAFGTNNFSGALPPELG 158
+N F+G +P LG L L +L N+ SG +P LG
Sbjct: 475 YNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALG 511
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 64.5 bits (157), Expect = 2e-10
Identities = 34/85 (40%), Positives = 53/85 (62%), Gaps = 2/85 (2%)
Query: 262 LSLRNALITGTIPFGIGELQMLQILDLSFNNLTGQIPATLFNIDSLEYLFLGNNSLSGTL 321
L L N + G IP I +L+ LQ ++LS N++ G IP +L +I SLE L L NS +G++
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482
Query: 322 PDQKSE--NLQKIDLSHNHLSGTFP 344
P+ + +L+ ++L+ N LSG P
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVP 507
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 62.9 bits (153), Expect = 4e-10
Identities = 28/67 (41%), Positives = 41/67 (61%)
Query: 256 LKNLTDLSLRNALITGTIPFGIGELQMLQILDLSFNNLTGQIPATLFNIDSLEYLFLGNN 315
L++L ++L I G IP +G + L++LDLS+N+ G IP +L + SL L L N
Sbjct: 441 LRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGN 500
Query: 316 SLSGTLP 322
SLSG +P
Sbjct: 501 SLSGRVP 507
|
Length = 623 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 62.2 bits (151), Expect = 9e-10
Identities = 36/106 (33%), Positives = 54/106 (50%)
Query: 79 GVIPEELVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKE 138
G +P +L +L L LK+ +N +G +P + + +L+ L SHN SG +P +
Sbjct: 489 GAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPV 548
Query: 139 LTVLAFGTNNFSGALPPELGNLAKLEQLYIDSCGAGGEIPSTFAKL 184
L+ L N SG +P LGN+ L Q+ I G +PST A L
Sbjct: 549 LSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFL 594
|
Length = 968 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 61.8 bits (150), Expect = 1e-09
Identities = 31/77 (40%), Positives = 45/77 (58%)
Query: 166 LYIDSCGAGGEIPSTFAKLRNMQTLWASDNPFTGKIPDFIGNWTKLKSLRFQGNSFQGPI 225
L +D+ G G IP+ +KLR++Q++ S N G IP +G+ T L+ L NSF G I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482
Query: 226 PSSLSKLASLESLQMSD 242
P SL +L SL L ++
Sbjct: 483 PESLGQLTSLRILNLNG 499
|
Length = 623 |
| >gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Score = 60.4 bits (146), Expect = 2e-09
Identities = 73/260 (28%), Positives = 107/260 (41%), Gaps = 15/260 (5%)
Query: 132 ELGNLKELTVLAFGTNNFSGALPPELGNLA-KLEQLYIDSCGAGGEIPSTFAKLRNMQTL 190
EL L LT L NN + +PP +G L L++L + +PS L N++ L
Sbjct: 111 ELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNL 168
Query: 191 WASDNPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLESLQMSDIYNVS-SS 249
S N + +P + N + L +L GN +P + L++LE L +S N
Sbjct: 169 DLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLS--NNSIIEL 224
Query: 250 LDFVMSLKNLTDLSLRNALITGTIPFGIGELQMLQILDLSFNNLTGQIPATLFNIDSLEY 309
L + +LKNL+ L L N + +P IG L L+ LDLS NN I + L ++ +L
Sbjct: 225 LSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLS-NNQISSISS-LGSLTNLRE 281
Query: 310 LFLGNNSLSGTLPDQKSENLQKIDLSHNHLSGTFPLWVNSELQMNLAVNNFKF-DISNIS 368
L L NSLS LP L L + L+ + L N + S+
Sbjct: 282 LDLSGNSLSNALPLIALLLLLLELLLNLLLTLKALE--LKLNSILLNNNILSNGETSSPE 339
Query: 369 VFPGLNCLQRNFTCNRNAPQ 388
N NA
Sbjct: 340 ALSI-LESLNNLWTLDNALD 358
|
Length = 394 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 58.3 bits (141), Expect = 1e-08
Identities = 36/103 (34%), Positives = 52/103 (50%), Gaps = 24/103 (23%)
Query: 199 GKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLESLQMSDIYNVSSSLDFVMSLKN 258
G IP+ I L+S+ GNS +G IP SL + SLE L +S YN
Sbjct: 432 GFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLS--YNS------------ 477
Query: 259 LTDLSLRNALITGTIPFGIGELQMLQILDLSFNNLTGQIPATL 301
G+IP +G+L L+IL+L+ N+L+G++PA L
Sbjct: 478 ----------FNGSIPESLGQLTSLRILNLNGNSLSGRVPAAL 510
|
Length = 623 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 56.8 bits (137), Expect = 4e-08
Identities = 36/151 (23%), Positives = 69/151 (45%), Gaps = 6/151 (3%)
Query: 15 QQWDAPAVPLWNISGNPCSGSALNATDSE----FESPNNNPAIVCNCTFDNGATCHITKL 70
++WD P++ + +++ N G ++ S+ + N + G+ + +L
Sbjct: 447 RKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKL--GSLSELMQL 504
Query: 71 RVYGLNKKGVIPEELVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVP 130
++ G IP+EL + + L L + N +G +P+ + L L S N SG +P
Sbjct: 505 KLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIP 564
Query: 131 RELGNLKELTVLAFGTNNFSGALPPELGNLA 161
+ LGN++ L + N+ G+LP LA
Sbjct: 565 KNLGNVESLVQVNISHNHLHGSLPSTGAFLA 595
|
Length = 968 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 56.8 bits (137), Expect = 5e-08
Identities = 32/109 (29%), Positives = 59/109 (54%), Gaps = 4/109 (3%)
Query: 679 SYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSLDMEKIYLLEWAWNLHENN 738
S Y+APE +TEK+D++ FG++ +E+++G++ +D + ++EWA + +
Sbjct: 841 SSAYVAPETRETKDITEKSDIYGFGLILIELLTGKSPADAEFGVHG-SIVEWARYCYSDC 899
Query: 739 QSFGLVDPTL---TEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAML 784
+DP++ N E + V+ +AL CT T P RP + V+ L
Sbjct: 900 HLDMWIDPSIRGDVSVNQNEIVEVMNLALHCTATDPTARPCANDVLKTL 948
|
Length = 968 |
| >gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat | Back alignment and domain information |
|---|
Score = 49.1 bits (118), Expect = 9e-08
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 283 LQILDLSFNNLTGQIPATLFNIDSLEYLFLGNNSLSGTLPD--QKSENLQKIDLSHNHL 339
L+ LDLS N LT + +L+ L L N+L+ P+ +L+ +DLS N+L
Sbjct: 2 LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
|
Length = 60 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 51.0 bits (122), Expect = 2e-06
Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 2/89 (2%)
Query: 143 AFGTNN--FSGALPPELGNLAKLEQLYIDSCGAGGEIPSTFAKLRNMQTLWASDNPFTGK 200
G +N G +P ++ L L+ + + G IP + + +++ L S N F G
Sbjct: 422 GLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS 481
Query: 201 IPDFIGNWTKLKSLRFQGNSFQGPIPSSL 229
IP+ +G T L+ L GNS G +P++L
Sbjct: 482 IPESLGQLTSLRILNLNGNSLSGRVPAAL 510
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 48.7 bits (116), Expect = 1e-05
Identities = 40/122 (32%), Positives = 57/122 (46%), Gaps = 19/122 (15%)
Query: 460 LYQTSRISAG---SLRYYGLGLVNGPYNVSLLFAETNFPDPSTERWESRGRRVFDIYVQG 516
LYQ++ +S L Y N Y+V L FAE D S + G+RVFD+ + G
Sbjct: 254 LYQSALVSTDTQPDLSYTMDVDPNRNYSVWLHFAEI---DNSIT---AEGKRVFDVLING 307
Query: 517 TLRWKDFDISKEAGGPNRAIIKNFSATVSENHLEIHLFWAGKGTCCIPKQGNYGPAISAL 576
+KD DI K +G A++ N + VS L I L PK+G + I+A+
Sbjct: 308 DTAFKDVDIVKMSGERYTALVLNKTVAVSGRTLTIVL---------QPKKGTHA-IINAI 357
Query: 577 SV 578
V
Sbjct: 358 EV 359
|
Length = 623 |
| >gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Score = 48.0 bits (114), Expect = 1e-05
Identities = 55/172 (31%), Positives = 75/172 (43%), Gaps = 10/172 (5%)
Query: 225 IPSSLSKLASLESLQMSDIYNVSSSLDFVMSLKNLTDL-SLRNALITGTI-PFGIGELQM 282
+PSSLS+L SL+ L S I SSLD +L NL L SL L + EL
Sbjct: 62 LPSSLSRLLSLDLLSPSGI----SSLDGSENLLNLLPLPSLDLNLNRLRSNISELLELTN 117
Query: 283 LQILDLSFNNLTGQIPATLFNIDSLEYLFLGNNSLSGTLPDQKSE-NLQKIDLSHNHLSG 341
L LDL NN+T P +L+ L L +N + ++ NL+ +DLS N LS
Sbjct: 118 LTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSD 177
Query: 342 TFPLWVNSELQMNLAVNNFKFDISNISVFPGLNCLQRNFTCNRNAPQCKLPS 393
L N NL ++ K IS++ L + N +L S
Sbjct: 178 LPKLLSNLSNLNNLDLSGNK--ISDLPPEIELLSALEELDLSNN-SIIELLS 226
|
Length = 394 |
| >gnl|CDD|173623 cd00180, PKc, Catalytic domain of Protein Kinases | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 4e-04
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Query: 657 DFNRSNKLGEGGYGPVYKVTANSYGYLAPE-YAMRGHLTEKADVFSFGVVALEI 709
DF S L V + Y+APE +G+ +EK+D++S GV+ E+
Sbjct: 136 DFGLSKLLTSDKSLLKTIVG--TPAYMAPEVLLGKGYYSEKSDIWSLGVILYEL 187
|
Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which one kinase activates a second kinase, which in turn, may act on other kinases; this sequential action transmits a signal from the cell surface to target proteins, which results in cellular responses. The PK family is one of the largest known protein families with more than 100 homologous yeast enzymes and 550 human proteins. A fraction of PK family members are pseudokinases that lack crucial residues for catalytic activity. The mutiplicity of kinases allows for specific regulation according to substrate, tissue distribution, and cellular localization. PKs regulate many cellular processes including proliferation, division, differentiation, motility, survival, metabolism, cell-cycle progression, cytoskeletal rearrangement, immunity, and neuronal functions. Many kinases are implicated in the development of various human diseases including different types of cancer. Length = 215 |
| >gnl|CDD|214567 smart00220, S_TKc, Serine/Threonine protein kinases, catalytic domain | Back alignment and domain information |
|---|
Score = 40.6 bits (96), Expect = 0.002
Identities = 15/70 (21%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
Query: 657 DFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASS 716
DF + +L G + T Y+APE + + D++S GV+ E+++G+
Sbjct: 140 DFGLARQLDPGEKLTTFVGTPE---YMAPEVLLGKGYGKAVDIWSLGVILYELLTGKPPF 196
Query: 717 DKSLDMEKIY 726
+ +++
Sbjct: 197 PGDDQLLELF 206
|
Phosphotransferases. Serine or threonine-specific kinase subfamily. Length = 254 |
| >gnl|CDD|133192 cd05061, PTKc_InsR, Catalytic domain of the Protein Tyrosine Kinase, Insulin Receptor | Back alignment and domain information |
|---|
Score = 40.3 bits (94), Expect = 0.002
Identities = 39/137 (28%), Positives = 56/137 (40%), Gaps = 26/137 (18%)
Query: 655 TKDFNRSNKLGEGGYG--PVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISG 712
T+D ++ +GG G PV ++APE G T +D++SFGVV EI S
Sbjct: 166 TRDIYETDYYRKGGKGLLPVR--------WMAPESLKDGVFTTSSDMWSFGVVLWEITS- 216
Query: 713 RASSDKSLDMEKIYLLEWAWNLHENNQSFGLV-DPTLTEFNDKEALRVIGVALLCTQTSP 771
L E + N Q V D + D RV + +C Q +P
Sbjct: 217 --------------LAEQPYQGLSNEQVLKFVMDGGYLDQPDNCPERVTDLMRMCWQFNP 262
Query: 772 MMRPPMSRVVAMLAGDI 788
MRP +V +L D+
Sbjct: 263 KMRPTFLEIVNLLKDDL 279
|
Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR is a receptor tyr kinase (RTK) that is composed of two alphabeta heterodimers. Binding of the insulin ligand to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR signaling plays an important role in many cellular processes including glucose homeostasis, glycogen synthesis, lipid and protein metabolism, ion and amino acid transport, cell cycle and proliferation, cell differentiation, gene transcription, and nitric oxide synthesis. Insulin resistance, caused by abnormalities in InsR signaling, has been described in diabetes, hypertension, cardiovascular disease, metabolic syndrome, heart failure, and female infertility. Length = 288 |
| >gnl|CDD|173624 cd00192, PTKc, Catalytic domain of Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Score = 40.2 bits (95), Expect = 0.003
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 682 YLAPEYAMRGHLTEKADVFSFGVVALEIIS 711
++APE G T K+DV+SFGV+ EI +
Sbjct: 173 WMAPESLKDGIFTSKSDVWSFGVLLWEIFT 202
|
Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain, leading to intracellular signaling. Some RTKs are orphan receptors with no known ligands. Non-receptor (or cytoplasmic) tyr kinases are distributed in different intracellular compartments and are usually multi-domain proteins containing a catalytic tyr kinase domain as well as various regulatory domains such as SH3 and SH2. PTKs are usually autoinhibited and require a mechanism for activation. In many PTKs, the phosphorylation of tyr residues in the activation loop is essential for optimal activity. Aberrant expression of PTKs is associated with many development abnormalities and cancers. Length = 262 |
| >gnl|CDD|219530 pfam07714, Pkinase_Tyr, Protein tyrosine kinase | Back alignment and domain information |
|---|
Score = 39.8 bits (94), Expect = 0.004
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 683 LAPEYAMRGHLTEKADVFSFGVVALEIISG 712
+APE G T K+DV+SFGV+ EI +
Sbjct: 171 MAPESLKDGKFTSKSDVWSFGVLLWEIFTL 200
|
Length = 258 |
| >gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 0.004
Identities = 45/213 (21%), Positives = 80/213 (37%), Gaps = 38/213 (17%)
Query: 163 LEQLYIDSCGAGGE----IPSTFAKLRNMQTLWASDNPFTGKIPDFIG-------NWTKL 211
L+ L ++ G E + S +++ L S N TG+IP + L
Sbjct: 25 LQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLN-ETGRIPRGLQSLLQGLTKGCGL 83
Query: 212 KSLRFQGNSFQG---PIPSSLSKLASLESLQMSDIYNVSSSLDFV-----MSLKNLTDLS 263
+ L N+ + SL + +SL+ L++++ L + L L
Sbjct: 84 QELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLV 143
Query: 264 LRNALITGTIPFGIGEL----QMLQILDLSFNNLTGQIPATLFNI----DSLEYLFLGNN 315
L + G + + + L+ L+L+ N + L +LE L L NN
Sbjct: 144 LGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNN 203
Query: 316 S--------LSGTLPDQKSENLQKIDLSHNHLS 340
L+ TL KS L+ ++L N+L+
Sbjct: 204 GLTDEGASALAETLASLKS--LEVLNLGDNNLT 234
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 866 | |||
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 100.0 | |
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 100.0 | |
| KOG4194 | 873 | consensus Membrane glycoprotein LIG-1 [Signal tran | 99.95 | |
| KOG4194 | 873 | consensus Membrane glycoprotein LIG-1 [Signal tran | 99.95 | |
| KOG1187 | 361 | consensus Serine/threonine protein kinase [Signal | 99.93 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 99.91 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 99.91 | |
| KOG0472 | 565 | consensus Leucine-rich repeat protein [Function un | 99.84 | |
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 99.82 | |
| KOG0472 | 565 | consensus Leucine-rich repeat protein [Function un | 99.82 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 99.81 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 99.8 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 99.79 | |
| KOG4237 | 498 | consensus Extracellular matrix protein slit, conta | 99.79 | |
| KOG4237 | 498 | consensus Extracellular matrix protein slit, conta | 99.79 | |
| KOG0618 | 1081 | consensus Serine/threonine phosphatase 2C containi | 99.77 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 99.76 | |
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 99.76 | |
| KOG0618 | 1081 | consensus Serine/threonine phosphatase 2C containi | 99.75 | |
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 99.74 | |
| KOG0192 | 362 | consensus Tyrosine kinase specific for activated ( | 99.72 | |
| KOG0617 | 264 | consensus Ras suppressor protein (contains leucine | 99.72 | |
| KOG0197 | 468 | consensus Tyrosine kinases [Signal transduction me | 99.7 | |
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 99.69 | |
| KOG0617 | 264 | consensus Ras suppressor protein (contains leucine | 99.67 | |
| KOG1026 | 774 | consensus Nerve growth factor receptor TRKA and re | 99.66 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 99.61 | |
| KOG0196 | 996 | consensus Tyrosine kinase, EPH (ephrin) receptor f | 99.61 | |
| KOG0581 | 364 | consensus Mitogen-activated protein kinase kinase | 99.6 | |
| KOG4721 | 904 | consensus Serine/threonine protein kinase, contain | 99.6 | |
| KOG1095 | 1025 | consensus Protein tyrosine kinase [Signal transduc | 99.59 | |
| KOG0193 | 678 | consensus Serine/threonine protein kinase RAF [Sig | 99.54 | |
| smart00750 | 176 | KIND kinase non-catalytic C-lobe domain. It is an | 99.53 | |
| cd05048 | 283 | PTKc_Ror Catalytic Domain of the Protein Tyrosine | 99.5 | |
| PHA02988 | 283 | hypothetical protein; Provisional | 99.49 | |
| cd05102 | 338 | PTKc_VEGFR3 Catalytic domain of the Protein Tyrosi | 99.48 | |
| cd05094 | 291 | PTKc_TrkC Catalytic domain of the Protein Tyrosine | 99.45 | |
| cd05111 | 279 | PTK_HER3 Pseudokinase domain of the Protein Tyrosi | 99.44 | |
| KOG4278 | 1157 | consensus Protein tyrosine kinase [Signal transduc | 99.44 | |
| cd05091 | 283 | PTKc_Ror2 Catalytic domain of the Protein Tyrosine | 99.43 | |
| KOG0582 | 516 | consensus Ste20-like serine/threonine protein kina | 99.43 | |
| PF07714 | 259 | Pkinase_Tyr: Protein tyrosine kinase Protein kinas | 99.41 | |
| cd05096 | 304 | PTKc_DDR1 Catalytic domain of the Protein Tyrosine | 99.41 | |
| KOG1025 | 1177 | consensus Epidermal growth factor receptor EGFR an | 99.4 | |
| KOG0596 | 677 | consensus Dual specificity; serine/threonine and t | 99.4 | |
| KOG0591 | 375 | consensus NIMA (never in mitosis)-related G2-speci | 99.4 | |
| cd05106 | 374 | PTKc_CSF-1R Catalytic domain of the Protein Tyrosi | 99.4 | |
| KOG0199 | 1039 | consensus ACK and related non-receptor tyrosine ki | 99.4 | |
| PTZ00283 | 496 | serine/threonine protein kinase; Provisional | 99.39 | |
| cd05054 | 337 | PTKc_VEGFR Catalytic domain of the Protein Tyrosin | 99.38 | |
| cd05093 | 288 | PTKc_TrkB Catalytic domain of the Protein Tyrosine | 99.38 | |
| cd05051 | 296 | PTKc_DDR Catalytic domain of the Protein Tyrosine | 99.37 | |
| KOG0201 | 467 | consensus Serine/threonine protein kinase [Signal | 99.37 | |
| cd05108 | 316 | PTKc_EGFR Catalytic domain of the Protein Tyrosine | 99.37 | |
| cd05062 | 277 | PTKc_IGF-1R Catalytic domain of the Protein Tyrosi | 99.37 | |
| KOG1024 | 563 | consensus Receptor-like protein tyrosine kinase RY | 99.37 | |
| cd05090 | 283 | PTKc_Ror1 Catalytic domain of the Protein Tyrosine | 99.36 | |
| cd05114 | 256 | PTKc_Tec_Rlk Catalytic domain of the Protein Tyros | 99.36 | |
| cd05035 | 273 | PTKc_Axl_like Catalytic Domain of Axl-like Protein | 99.36 | |
| cd05104 | 375 | PTKc_Kit Catalytic domain of the Protein Tyrosine | 99.36 | |
| cd05049 | 280 | PTKc_Trk Catalytic domain of the Protein Tyrosine | 99.36 | |
| KOG1094 | 807 | consensus Discoidin domain receptor DDR1 [Signal t | 99.35 | |
| PTZ00267 | 478 | NIMA-related protein kinase; Provisional | 99.35 | |
| cd05043 | 280 | PTK_Ryk Pseudokinase domain of Ryk (Receptor relat | 99.34 | |
| cd05053 | 293 | PTKc_FGFR Catalytic domain of the Protein Tyrosine | 99.34 | |
| cd05032 | 277 | PTKc_InsR_like Catalytic domain of Insulin Recepto | 99.34 | |
| cd05097 | 295 | PTKc_DDR_like Catalytic domain of Discoidin Domain | 99.34 | |
| cd05092 | 280 | PTKc_TrkA Catalytic domain of the Protein Tyrosine | 99.34 | |
| cd05050 | 288 | PTKc_Musk Catalytic domain of the Protein Tyrosine | 99.34 | |
| KOG0575 | 592 | consensus Polo-like serine/threonine protein kinas | 99.34 | |
| KOG0198 | 313 | consensus MEKK and related serine/threonine protei | 99.34 | |
| KOG0200 | 609 | consensus Fibroblast/platelet-derived growth facto | 99.34 | |
| cd05045 | 290 | PTKc_RET Catalytic domain of the Protein Tyrosine | 99.33 | |
| cd05033 | 266 | PTKc_EphR Catalytic domain of Ephrin Receptor Prot | 99.33 | |
| cd05080 | 283 | PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the | 99.33 | |
| cd05087 | 269 | PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein | 99.33 | |
| cd05105 | 400 | PTKc_PDGFR_alpha Catalytic domain of the Protein T | 99.32 | |
| cd05084 | 252 | PTKc_Fes Catalytic domain of the Protein Tyrosine | 99.32 | |
| cd05044 | 269 | PTKc_c-ros Catalytic domain of the Protein Tyrosin | 99.32 | |
| cd05052 | 263 | PTKc_Abl Catalytic domain of the Protein Tyrosine | 99.32 | |
| KOG0578 | 550 | consensus p21-activated serine/threonine protein k | 99.32 | |
| cd05116 | 257 | PTKc_Syk Catalytic domain of the Protein Tyrosine | 99.32 | |
| cd07862 | 290 | STKc_CDK6 Catalytic domain of the Serine/Threonine | 99.32 | |
| cd05100 | 334 | PTKc_FGFR3 Catalytic domain of the Protein Tyrosin | 99.32 | |
| PHA02882 | 294 | putative serine/threonine kinase; Provisional | 99.32 | |
| cd05113 | 256 | PTKc_Btk_Bmx Catalytic domain of the Protein Tyros | 99.31 | |
| cd05058 | 262 | PTKc_Met_Ron Catalytic domain of the Protein Tyros | 99.31 | |
| cd05075 | 272 | PTKc_Axl Catalytic domain of the Protein Tyrosine | 99.31 | |
| cd05112 | 256 | PTKc_Itk Catalytic domain of the Protein Tyrosine | 99.31 | |
| cd05064 | 266 | PTKc_EphR_A10 Catalytic domain of the Protein Tyro | 99.31 | |
| cd05109 | 279 | PTKc_HER2 Catalytic domain of the Protein Tyrosine | 99.31 | |
| cd05069 | 260 | PTKc_Yes Catalytic domain of the Protein Tyrosine | 99.31 | |
| cd05068 | 261 | PTKc_Frk_like Catalytic domain of Fyn-related kina | 99.3 | |
| cd05071 | 262 | PTKc_Src Catalytic domain of the Protein Tyrosine | 99.3 | |
| cd05072 | 261 | PTKc_Lyn Catalytic domain of the Protein Tyrosine | 99.3 | |
| cd05063 | 268 | PTKc_EphR_A2 Catalytic domain of the Protein Tyros | 99.3 | |
| cd05110 | 303 | PTKc_HER4 Catalytic domain of the Protein Tyrosine | 99.3 | |
| cd05061 | 288 | PTKc_InsR Catalytic domain of the Protein Tyrosine | 99.3 | |
| cd05060 | 257 | PTKc_Syk_like Catalytic domain of Spleen Tyrosine | 99.3 | |
| cd05631 | 285 | STKc_GRK4 Catalytic domain of the Protein Serine/T | 99.3 | |
| cd05101 | 304 | PTKc_FGFR2 Catalytic domain of the Protein Tyrosin | 99.29 | |
| cd05055 | 302 | PTKc_PDGFR Catalytic domain of the Protein Tyrosin | 99.29 | |
| cd05089 | 297 | PTKc_Tie1 Catalytic domain of the Protein Tyrosine | 99.29 | |
| cd07859 | 338 | STKc_TDY_MAPK_plant Catalytic domain of the Serine | 99.29 | |
| cd05095 | 296 | PTKc_DDR2 Catalytic domain of the Protein Tyrosine | 99.29 | |
| cd05148 | 261 | PTKc_Srm_Brk Catalytic domain of the Protein Tyros | 99.29 | |
| cd05115 | 257 | PTKc_Zap-70 Catalytic domain of the Protein Tyrosi | 99.29 | |
| KOG4279 | 1226 | consensus Serine/threonine protein kinase [Signal | 99.29 | |
| cd08528 | 269 | STKc_Nek10 Catalytic domain of the Protein Serine/ | 99.29 | |
| cd06649 | 331 | PKc_MEK2 Catalytic domain of the dual-specificity | 99.28 | |
| cd05040 | 257 | PTKc_Ack_like Catalytic domain of the Protein Tyro | 99.28 | |
| cd05070 | 260 | PTKc_Fyn_Yrk Catalytic domain of the Protein Tyros | 99.28 | |
| cd07848 | 287 | STKc_CDKL5 Catalytic domain of the Serine/Threonin | 99.28 | |
| cd05107 | 401 | PTKc_PDGFR_beta Catalytic domain of the Protein Ty | 99.27 | |
| KOG0194 | 474 | consensus Protein tyrosine kinase [Signal transduc | 99.27 | |
| PHA03207 | 392 | serine/threonine kinase US3; Provisional | 99.27 | |
| cd00192 | 262 | PTKc Catalytic domain of Protein Tyrosine Kinases. | 99.27 | |
| cd08529 | 256 | STKc_FA2-like Catalytic domain of the Protein Seri | 99.27 | |
| cd05059 | 256 | PTKc_Tec_like Catalytic domain of Tec-like Protein | 99.27 | |
| cd08229 | 267 | STKc_Nek7 Catalytic domain of the Protein Serine/T | 99.26 | |
| cd05098 | 307 | PTKc_FGFR1 Catalytic domain of the Protein Tyrosin | 99.26 | |
| cd05099 | 314 | PTKc_FGFR4 Catalytic domain of the Protein Tyrosin | 99.26 | |
| KOG0532 | 722 | consensus Leucine-rich repeat (LRR) protein, conta | 99.26 | |
| PLN00034 | 353 | mitogen-activated protein kinase kinase; Provision | 99.26 | |
| cd06624 | 268 | STKc_ASK Catalytic domain of the Protein Serine/Th | 99.26 | |
| cd08228 | 267 | STKc_Nek6 Catalytic domain of the Protein Serine/T | 99.25 | |
| cd05036 | 277 | PTKc_ALK_LTK Catalytic domain of the Protein Tyros | 99.25 | |
| cd05065 | 269 | PTKc_EphR_B Catalytic domain of the Protein Tyrosi | 99.25 | |
| cd05085 | 250 | PTKc_Fer Catalytic domain of the Protein Tyrosine | 99.25 | |
| PTZ00284 | 467 | protein kinase; Provisional | 99.25 | |
| cd05038 | 284 | PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the P | 99.25 | |
| cd05086 | 268 | PTKc_Aatyk2 Catalytic domain of the Protein Tyrosi | 99.25 | |
| PHA03211 | 461 | serine/threonine kinase US3; Provisional | 99.24 | |
| PHA03212 | 391 | serine/threonine kinase US3; Provisional | 99.23 | |
| cd06612 | 256 | STKc_MST1_2 Catalytic domain of the Protein Serine | 99.23 | |
| cd07874 | 355 | STKc_JNK3 Catalytic domain of the Serine/Threonine | 99.23 | |
| cd05042 | 269 | PTKc_Aatyk Catalytic domain of the Protein Tyrosin | 99.23 | |
| cd06642 | 277 | STKc_STK25-YSK1 Catalytic domain of the Protein Se | 99.23 | |
| cd05057 | 279 | PTKc_EGFR_like Catalytic domain of Epidermal Growt | 99.23 | |
| cd05041 | 251 | PTKc_Fes_like Catalytic domain of Fes-like Protein | 99.23 | |
| cd05600 | 333 | STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p- | 99.23 | |
| cd05592 | 316 | STKc_nPKC_theta_delta Catalytic domain of the Prot | 99.22 | |
| cd05079 | 284 | PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the | 99.22 | |
| cd06637 | 272 | STKc_TNIK Catalytic domain of the Protein Serine/T | 99.22 | |
| cd05078 | 258 | PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain | 99.22 | |
| KOG0532 | 722 | consensus Leucine-rich repeat (LRR) protein, conta | 99.22 | |
| cd05082 | 256 | PTKc_Csk Catalytic domain of the Protein Tyrosine | 99.22 | |
| cd05067 | 260 | PTKc_Lck_Blk Catalytic domain of the Protein Tyros | 99.22 | |
| cd07875 | 364 | STKc_JNK1 Catalytic domain of the Serine/Threonine | 99.22 | |
| cd06619 | 279 | PKc_MKK5 Catalytic domain of the dual-specificity | 99.21 | |
| KOG0615 | 475 | consensus Serine/threonine protein kinase Chk2 and | 99.21 | |
| PHA03209 | 357 | serine/threonine kinase US3; Provisional | 99.21 | |
| cd05074 | 273 | PTKc_Tyro3 Catalytic domain of the Protein Tyrosin | 99.21 | |
| cd06609 | 274 | STKc_MST3_like Catalytic domain of Mammalian Ste20 | 99.21 | |
| cd05103 | 343 | PTKc_VEGFR2 Catalytic domain of the Protein Tyrosi | 99.2 | |
| cd05595 | 323 | STKc_PKB_beta Catalytic domain of the Protein Seri | 99.2 | |
| cd05039 | 256 | PTKc_Csk_like Catalytic domain of C-terminal Src k | 99.2 | |
| cd05081 | 284 | PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of | 99.2 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.2 | |
| cd05047 | 270 | PTKc_Tie Catalytic domain of Tie Protein Tyrosine | 99.2 | |
| cd06613 | 262 | STKc_MAP4K3_like Catalytic domain of Mitogen-activ | 99.2 | |
| cd07853 | 372 | STKc_NLK Catalytic domain of the Serine/Threonine | 99.2 | |
| cd07863 | 288 | STKc_CDK4 Catalytic domain of the Serine/Threonine | 99.19 | |
| cd05575 | 323 | STKc_SGK Catalytic domain of the Protein Serine/Th | 99.19 | |
| KOG0694 | 694 | consensus Serine/threonine protein kinase [Signal | 99.19 | |
| KOG0983 | 391 | consensus Mitogen-activated protein kinase (MAPK) | 99.19 | |
| KOG0598 | 357 | consensus Ribosomal protein S6 kinase and related | 99.19 | |
| KOG4257 | 974 | consensus Focal adhesion tyrosine kinase FAK, cont | 99.18 | |
| cd05614 | 332 | STKc_MSK2_N N-terminal catalytic domain of the Pro | 99.18 | |
| cd07876 | 359 | STKc_JNK2 Catalytic domain of the Serine/Threonine | 99.18 | |
| cd07833 | 288 | STKc_CDKL Catalytic domain of Cyclin-Dependent pro | 99.18 | |
| cd05066 | 267 | PTKc_EphR_A Catalytic domain of the Protein Tyrosi | 99.18 | |
| cd08224 | 267 | STKc_Nek6_Nek7 Catalytic domain of the Protein Ser | 99.18 | |
| cd06640 | 277 | STKc_MST4 Catalytic domain of the Protein Serine/T | 99.18 | |
| cd05607 | 277 | STKc_GRK7 Catalytic domain of the Protein Serine/T | 99.18 | |
| cd08217 | 265 | STKc_Nek2 Catalytic domain of the Protein Serine/T | 99.18 | |
| cd08223 | 257 | STKc_Nek4 Catalytic domain of the Protein Serine/T | 99.18 | |
| cd06651 | 266 | STKc_MEKK3 Catalytic domain of the Protein Serine/ | 99.18 | |
| cd05619 | 316 | STKc_nPKC_theta Catalytic domain of the Protein Se | 99.18 | |
| cd05073 | 260 | PTKc_Hck Catalytic domain of the Protein Tyrosine | 99.17 | |
| PTZ00036 | 440 | glycogen synthase kinase; Provisional | 99.17 | |
| cd05617 | 327 | STKc_aPKC_zeta Catalytic domain of the Protein Ser | 99.17 | |
| cd06620 | 284 | PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr | 99.17 | |
| cd05571 | 323 | STKc_PKB Catalytic domain of the Protein Serine/Th | 99.17 | |
| cd05083 | 254 | PTKc_Chk Catalytic domain of the Protein Tyrosine | 99.16 | |
| cd07871 | 288 | STKc_PCTAIRE3 Catalytic domain of the Serine/Threo | 99.16 | |
| cd05585 | 312 | STKc_YPK1_like Catalytic domain of Yeast Protein K | 99.16 | |
| PTZ00266 | 1021 | NIMA-related protein kinase; Provisional | 99.16 | |
| cd07867 | 317 | STKc_CDC2L6 Catalytic domain of Serine/Threonine K | 99.16 | |
| cd05608 | 280 | STKc_GRK1 Catalytic domain of the Protein Serine/T | 99.16 | |
| cd05618 | 329 | STKc_aPKC_iota Catalytic domain of the Protein Ser | 99.16 | |
| KOG0583 | 370 | consensus Serine/threonine protein kinase [Signal | 99.16 | |
| cd06650 | 333 | PKc_MEK1 Catalytic domain of the dual-specificity | 99.16 | |
| cd05088 | 303 | PTKc_Tie2 Catalytic domain of the Protein Tyrosine | 99.16 | |
| cd05077 | 262 | PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of th | 99.16 | |
| cd06654 | 296 | STKc_PAK1 Catalytic domain of the Protein Serine/T | 99.15 | |
| cd08219 | 255 | STKc_Nek3 Catalytic domain of the Protein Serine/T | 99.15 | |
| cd05037 | 259 | PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the | 99.15 | |
| cd05601 | 330 | STKc_CRIK Catalytic domain of the Protein Serine/T | 99.15 | |
| cd06655 | 296 | STKc_PAK2 Catalytic domain of the Protein Serine/T | 99.15 | |
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 99.15 | |
| cd05588 | 329 | STKc_aPKC Catalytic domain of the Protein Serine/T | 99.15 | |
| cd05620 | 316 | STKc_nPKC_delta Catalytic domain of the Protein Se | 99.15 | |
| cd05034 | 261 | PTKc_Src_like Catalytic domain of Src kinase-like | 99.15 | |
| cd07846 | 286 | STKc_CDKL2_3 Catalytic domain of the Serine/Threon | 99.15 | |
| cd07849 | 336 | STKc_ERK1_2_like Catalytic domain of Extracellular | 99.15 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 99.15 | |
| cd05584 | 323 | STKc_p70S6K Catalytic domain of the Protein Serine | 99.14 | |
| cd05593 | 328 | STKc_PKB_gamma Catalytic domain of the Protein Ser | 99.14 | |
| cd08221 | 256 | STKc_Nek9 Catalytic domain of the Protein Serine/T | 99.14 | |
| cd06607 | 307 | STKc_TAO Catalytic domain of the Protein Serine/Th | 99.14 | |
| cd05616 | 323 | STKc_cPKC_beta Catalytic domain of the Protein Ser | 99.14 | |
| cd05570 | 318 | STKc_PKC Catalytic domain of the Protein Serine/Th | 99.14 | |
| cd05632 | 285 | STKc_GRK5 Catalytic domain of the Protein Serine/T | 99.14 | |
| cd07860 | 284 | STKc_CDK2_3 Catalytic domain of the Serine/Threoni | 99.14 | |
| cd05602 | 325 | STKc_SGK1 Catalytic domain of the Protein Serine/T | 99.14 | |
| cd06639 | 291 | STKc_myosinIIIB Catalytic domain of the Protein Se | 99.13 | |
| cd06625 | 263 | STKc_MEKK3_like Catalytic domain of MAP/ERK kinase | 99.13 | |
| cd08218 | 256 | STKc_Nek1 Catalytic domain of the Protein Serine/T | 99.13 | |
| cd07868 | 317 | STKc_CDK8 Catalytic domain of the Serine/Threonine | 99.13 | |
| cd07861 | 285 | STKc_CDK1_euk Catalytic domain of the Serine/Threo | 99.13 | |
| cd07840 | 287 | STKc_CDK9_like Catalytic domain of Cyclin-Dependen | 99.13 | |
| cd05589 | 324 | STKc_PKN Catalytic domain of the Protein Serine/Th | 99.13 | |
| cd05605 | 285 | STKc_GRK4_like Catalytic domain of G protein-coupl | 99.13 | |
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 99.13 | |
| cd05603 | 321 | STKc_SGK2 Catalytic domain of the Protein Serine/T | 99.13 | |
| cd06658 | 292 | STKc_PAK5 Catalytic domain of the Protein Serine/T | 99.13 | |
| cd05590 | 320 | STKc_nPKC_eta Catalytic domain of the Protein Seri | 99.13 | |
| cd06621 | 287 | PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek | 99.13 | |
| KOG2052 | 513 | consensus Activin A type IB receptor, serine/threo | 99.13 | |
| cd06646 | 267 | STKc_MAP4K5 Catalytic domain of the Protein Serine | 99.13 | |
| cd05587 | 324 | STKc_cPKC Catalytic domain of the Protein Serine/T | 99.13 | |
| KOG1909 | 382 | consensus Ran GTPase-activating protein [RNA proce | 99.12 | |
| cd06631 | 265 | STKc_YSK4 Catalytic domain of the Protein Serine/T | 99.12 | |
| cd06659 | 297 | STKc_PAK6 Catalytic domain of the Protein Serine/T | 99.12 | |
| cd07835 | 283 | STKc_CDK1_like Catalytic domain of Cyclin-Dependen | 99.12 | |
| cd08225 | 257 | STKc_Nek5 Catalytic domain of the Protein Serine/T | 99.12 | |
| cd05604 | 325 | STKc_SGK3 Catalytic domain of the Protein Serine/T | 99.12 | |
| cd07866 | 311 | STKc_BUR1 Catalytic domain of the Serine/Threonine | 99.12 | |
| cd07878 | 343 | STKc_p38beta_MAPK11 Catalytic domain of the Serine | 99.12 | |
| cd06648 | 285 | STKc_PAK_II Catalytic domain of the Protein Serine | 99.12 | |
| cd07852 | 337 | STKc_MAPK15 Catalytic domain of the Serine/Threoni | 99.12 | |
| PTZ00263 | 329 | protein kinase A catalytic subunit; Provisional | 99.12 | |
| cd05610 | 669 | STKc_MASTL Catalytic domain of the Protein Serine/ | 99.11 | |
| cd05118 | 283 | STKc_CMGC Catalytic domain of CMGC family Serine/T | 99.11 | |
| cd06616 | 288 | PKc_MKK4 Catalytic domain of the dual-specificity | 99.11 | |
| cd05591 | 321 | STKc_nPKC_epsilon Catalytic domain of the Protein | 99.11 | |
| cd06638 | 286 | STKc_myosinIIIA Catalytic domain of the Protein Se | 99.11 | |
| cd06628 | 267 | STKc_MAPKKK_Byr2_like Catalytic domain of fungal B | 99.11 | |
| cd05573 | 350 | STKc_ROCK_NDR_like Catalytic domain of ROCK- and N | 99.11 | |
| smart00219 | 258 | TyrKc Tyrosine kinase, catalytic domain. Phosphotr | 99.11 | |
| cd05612 | 291 | STKc_PRKX_like Catalytic domain of PRKX-like Prote | 99.11 | |
| cd06610 | 267 | STKc_OSR1_SPAK Catalytic domain of the Protein Ser | 99.11 | |
| cd06917 | 277 | STKc_NAK1_like Catalytic domain of Fungal Nak1-lik | 99.11 | |
| cd07838 | 287 | STKc_CDK4_6_like Catalytic domain of Cyclin-Depend | 99.11 | |
| cd07865 | 310 | STKc_CDK9 Catalytic domain of the Serine/Threonine | 99.11 | |
| cd08220 | 256 | STKc_Nek8 Catalytic domain of the Protein Serine/T | 99.1 | |
| cd07869 | 303 | STKc_PFTAIRE1 Catalytic domain of the Serine/Threo | 99.1 | |
| cd07831 | 282 | STKc_MOK Catalytic domain of the Serine/Threonine | 99.1 | |
| cd07842 | 316 | STKc_CDK8_like Catalytic domain of Cyclin-Dependen | 99.1 | |
| cd05076 | 274 | PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of th | 99.1 | |
| cd06608 | 275 | STKc_myosinIII_like Catalytic domain of Class III | 99.1 | |
| PRK13184 | 932 | pknD serine/threonine-protein kinase; Reviewed | 99.1 | |
| KOG0986 | 591 | consensus G protein-coupled receptor kinase [Signa | 99.1 | |
| cd05122 | 253 | PKc_STE Catalytic domain of STE family Protein Kin | 99.1 | |
| PF00069 | 260 | Pkinase: Protein kinase domain Protein kinase; unc | 99.1 | |
| cd07879 | 342 | STKc_p38delta_MAPK13 Catalytic domain of the Serin | 99.1 | |
| cd05586 | 330 | STKc_Sck1_like Catalytic domain of Suppressor of l | 99.1 | |
| cd05630 | 285 | STKc_GRK6 Catalytic domain of the Protein Serine/T | 99.09 | |
| cd08530 | 256 | STKc_CNK2-like Catalytic domain of the Protein Ser | 99.09 | |
| cd07830 | 283 | STKc_MAK_like Catalytic domain of Male germ cell-A | 99.09 | |
| cd07847 | 286 | STKc_CDKL1_4 Catalytic domain of the Serine/Threon | 99.09 | |
| cd06615 | 308 | PKc_MEK Catalytic domain of the dual-specificity P | 99.09 | |
| KOG0577 | 948 | consensus Serine/threonine protein kinase [Signal | 99.09 | |
| cd06618 | 296 | PKc_MKK7 Catalytic domain of the dual-specificity | 99.09 | |
| cd07872 | 309 | STKc_PCTAIRE2 Catalytic domain of the Serine/Threo | 99.09 | |
| cd06644 | 292 | STKc_STK10_LOK Catalytic domain of the Protein Ser | 99.09 | |
| cd05594 | 325 | STKc_PKB_alpha Catalytic domain of the Protein Ser | 99.09 | |
| PTZ00426 | 340 | cAMP-dependent protein kinase catalytic subunit; P | 99.08 | |
| cd07839 | 284 | STKc_CDK5 Catalytic domain of the Serine/Threonine | 99.08 | |
| cd05056 | 270 | PTKc_FAK Catalytic domain of the Protein Tyrosine | 99.08 | |
| cd06643 | 282 | STKc_SLK Catalytic domain of the Protein Serine/Th | 99.08 | |
| cd06623 | 264 | PKc_MAPKK_plant_like Catalytic domain of Plant dua | 99.08 | |
| cd05615 | 323 | STKc_cPKC_alpha Catalytic domain of the Protein Se | 99.08 | |
| cd05628 | 363 | STKc_NDR1 Catalytic domain of the Protein Serine/T | 99.08 | |
| KOG0033 | 355 | consensus Ca2+/calmodulin-dependent protein kinase | 99.08 | |
| cd06629 | 272 | STKc_MAPKKK_Bck1_like Catalytic domain of fungal B | 99.08 | |
| cd06605 | 265 | PKc_MAPKK Catalytic domain of the dual-specificity | 99.08 | |
| cd07873 | 301 | STKc_PCTAIRE1 Catalytic domain of the Serine/Threo | 99.08 | |
| cd06635 | 317 | STKc_TAO1 Catalytic domain of the Protein Serine/T | 99.07 | |
| KOG1259 | 490 | consensus Nischarin, modulator of integrin alpha5 | 99.07 | |
| KOG0589 | 426 | consensus Serine/threonine protein kinase [General | 99.07 | |
| cd07858 | 337 | STKc_TEY_MAPK_plant Catalytic domain of the Serine | 99.07 | |
| KOG0696 | 683 | consensus Serine/threonine protein kinase [Signal | 99.07 | |
| cd06641 | 277 | STKc_MST3 Catalytic domain of the Protein Serine/T | 99.07 | |
| cd06636 | 282 | STKc_MAP4K4_6 Catalytic domain of the Protein Seri | 99.07 | |
| KOG0603 | 612 | consensus Ribosomal protein S6 kinase [Signal tran | 99.06 | |
| cd06645 | 267 | STKc_MAP4K3 Catalytic domain of the Protein Serine | 99.06 | |
| KOG0588 | 786 | consensus Serine/threonine protein kinase [Cell cy | 99.06 | |
| PLN00009 | 294 | cyclin-dependent kinase A; Provisional | 99.06 | |
| cd07841 | 298 | STKc_CDK7 Catalytic domain of the Serine/Threonine | 99.06 | |
| KOG0592 | 604 | consensus 3-phosphoinositide-dependent protein kin | 99.06 | |
| KOG0595 | 429 | consensus Serine/threonine-protein kinase involved | 99.06 | |
| KOG1909 | 382 | consensus Ran GTPase-activating protein [RNA proce | 99.06 | |
| cd06606 | 260 | STKc_MAPKKK Catalytic domain of the Protein Serine | 99.06 | |
| cd05609 | 305 | STKc_MAST Catalytic domain of the Protein Serine/T | 99.06 | |
| cd06632 | 258 | STKc_MEKK1_plant Catalytic domain of the Protein S | 99.05 | |
| cd07870 | 291 | STKc_PFTAIRE2 Catalytic domain of the Serine/Threo | 99.05 | |
| cd06626 | 264 | STKc_MEKK4 Catalytic domain of the Protein Serine/ | 99.05 | |
| cd08227 | 327 | PK_STRAD_alpha Pseudokinase domain of STE20-relate | 99.05 | |
| KOG0597 | 808 | consensus Serine-threonine protein kinase FUSED [G | 99.05 | |
| cd07850 | 353 | STKc_JNK Catalytic domain of the Serine/Threonine | 99.05 | |
| cd05582 | 318 | STKc_RSK_N N-terminal catalytic domain of the Prot | 99.05 | |
| cd06622 | 286 | PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS | 99.04 | |
| cd06656 | 297 | STKc_PAK3 Catalytic domain of the Protein Serine/T | 99.04 | |
| cd06611 | 280 | STKc_SLK_like Catalytic domain of Ste20-like kinas | 99.04 | |
| cd08216 | 314 | PK_STRAD Pseudokinase domain of STE20-related kina | 99.04 | |
| cd07832 | 286 | STKc_CCRK Catalytic domain of the Serine/Threonine | 99.03 | |
| cd07864 | 302 | STKc_CDK12 Catalytic domain of the Serine/Threonin | 99.03 | |
| KOG3653 | 534 | consensus Transforming growth factor beta/activin | 99.02 | |
| cd05046 | 275 | PTK_CCK4 Pseudokinase domain of the Protein Tyrosi | 99.02 | |
| cd06614 | 286 | STKc_PAK Catalytic domain of the Protein Serine/Th | 99.02 | |
| cd07855 | 334 | STKc_ERK5 Catalytic domain of the Serine/Threonine | 99.02 | |
| cd05626 | 381 | STKc_LATS2 Catalytic domain of the Protein Serine/ | 99.02 | |
| cd07843 | 293 | STKc_CDC2L1 Catalytic domain of the Serine/Threoni | 99.02 | |
| cd06647 | 293 | STKc_PAK_I Catalytic domain of the Protein Serine/ | 99.02 | |
| KOG0605 | 550 | consensus NDR and related serine/threonine kinases | 99.02 | |
| cd07837 | 295 | STKc_CdkB_plant Catalytic domain of the Serine/Thr | 99.02 | |
| cd06634 | 308 | STKc_TAO2 Catalytic domain of the Protein Serine/T | 99.01 | |
| KOG3207 | 505 | consensus Beta-tubulin folding cofactor E [Posttra | 99.01 | |
| cd07845 | 309 | STKc_CDK10 Catalytic domain of the Serine/Threonin | 99.01 | |
| KOG3207 | 505 | consensus Beta-tubulin folding cofactor E [Posttra | 99.01 | |
| cd06652 | 265 | STKc_MEKK2 Catalytic domain of the Protein Serine/ | 99.01 | |
| cd07844 | 291 | STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like | 99.01 | |
| cd05633 | 279 | STKc_GRK3 Catalytic domain of the Protein Serine/T | 99.01 | |
| cd07829 | 282 | STKc_CDK_like Catalytic domain of Cyclin-Dependent | 99.0 | |
| cd07857 | 332 | STKc_MPK1 Catalytic domain of the Serine/Threonine | 99.0 | |
| PHA03210 | 501 | serine/threonine kinase US3; Provisional | 99.0 | |
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 99.0 | |
| KOG0593 | 396 | consensus Predicted protein kinase KKIAMRE [Genera | 99.0 | |
| KOG0580 | 281 | consensus Serine/threonine protein kinase [Cell cy | 98.99 | |
| PTZ00024 | 335 | cyclin-dependent protein kinase; Provisional | 98.99 | |
| KOG2345 | 302 | consensus Serine/threonine protein kinase/TGF-beta | 98.99 | |
| cd07851 | 343 | STKc_p38 Catalytic domain of the Serine/Threonine | 98.99 | |
| cd05597 | 331 | STKc_DMPK_like Catalytic domain of Myotonic Dystro | 98.99 | |
| cd07834 | 330 | STKc_MAPK Catalytic domain of the Serine/Threonine | 98.98 | |
| cd05611 | 260 | STKc_Rim15_like Catalytic domain of fungal Rim15-l | 98.98 | |
| cd05596 | 370 | STKc_ROCK Catalytic domain of the Protein Serine/T | 98.98 | |
| PHA03390 | 267 | pk1 serine/threonine-protein kinase 1; Provisional | 98.97 | |
| smart00220 | 244 | S_TKc Serine/Threonine protein kinases, catalytic | 98.97 | |
| KOG4645 | 1509 | consensus MAPKKK (MAP kinase kinase kinase) SSK2 a | 98.97 | |
| cd08222 | 260 | STKc_Nek11 Catalytic domain of the Protein Serine/ | 98.97 | |
| cd06657 | 292 | STKc_PAK4 Catalytic domain of the Protein Serine/T | 98.96 | |
| cd07856 | 328 | STKc_Sty1_Hog1 Catalytic domain of the Serine/Thre | 98.95 | |
| KOG0579 | 1187 | consensus Ste20-like serine/threonine protein kina | 98.95 | |
| cd08215 | 258 | STKc_Nek Catalytic domain of the Protein Serine/Th | 98.95 | |
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 98.95 | |
| KOG1006 | 361 | consensus Mitogen-activated protein kinase (MAPK) | 98.94 | |
| cd06627 | 254 | STKc_Cdc7_like Catalytic domain of Cell division c | 98.94 | |
| cd05624 | 331 | STKc_MRCK_beta Catalytic domain of the Protein Ser | 98.94 | |
| cd08226 | 328 | PK_STRAD_beta Pseudokinase domain of STE20-related | 98.94 | |
| cd07836 | 284 | STKc_Pho85 Catalytic domain of the Serine/Threonin | 98.94 | |
| cd05579 | 265 | STKc_MAST_like Catalytic domain of Microtubule-ass | 98.93 | |
| cd06633 | 313 | STKc_TAO3 Catalytic domain of the Protein Serine/T | 98.92 | |
| cd05574 | 316 | STKc_phototropin_like Catalytic domain of Phototro | 98.92 | |
| cd05606 | 278 | STKc_beta_ARK Catalytic domain of the Protein Seri | 98.92 | |
| cd05623 | 332 | STKc_MRCK_alpha Catalytic domain of the Protein Se | 98.92 | |
| cd05598 | 376 | STKc_LATS Catalytic domain of the Protein Serine/T | 98.92 | |
| cd05622 | 371 | STKc_ROCK1 Catalytic domain of the Protein Serine/ | 98.92 | |
| KOG0614 | 732 | consensus cGMP-dependent protein kinase [Signal tr | 98.91 | |
| cd06617 | 283 | PKc_MKK3_6 Catalytic domain of the dual-specificit | 98.91 | |
| KOG0599 | 411 | consensus Phosphorylase kinase gamma subunit [Carb | 98.91 | |
| cd05583 | 288 | STKc_MSK_N N-terminal catalytic domain of the Prot | 98.91 | |
| cd06630 | 268 | STKc_MEKK1 Catalytic domain of the Protein Serine/ | 98.91 | |
| cd05621 | 370 | STKc_ROCK2 Catalytic domain of the Protein Serine/ | 98.91 | |
| PLN03225 | 566 | Serine/threonine-protein kinase SNT7; Provisional | 98.91 | |
| cd05599 | 364 | STKc_NDR_like Catalytic domain of Nuclear Dbf2-Rel | 98.9 | |
| cd05629 | 377 | STKc_NDR_like_fungal Catalytic domain of Fungal Nu | 98.9 | |
| cd05577 | 277 | STKc_GRK Catalytic domain of the Protein Serine/Th | 98.89 | |
| cd07877 | 345 | STKc_p38alpha_MAPK14 Catalytic domain of the Serin | 98.89 | |
| cd05578 | 258 | STKc_Yank1 Catalytic domain of the Protein Serine/ | 98.89 | |
| KOG0584 | 632 | consensus Serine/threonine protein kinase [General | 98.89 | |
| KOG0661 | 538 | consensus MAPK related serine/threonine protein ki | 98.89 | |
| cd05572 | 262 | STKc_cGK_PKG Catalytic domain of the Protein Serin | 98.88 | |
| KOG4658 | 889 | consensus Apoptotic ATPase [Signal transduction me | 98.88 | |
| KOG0531 | 414 | consensus Protein phosphatase 1, regulatory subuni | 98.87 | |
| cd05627 | 360 | STKc_NDR2 Catalytic domain of the Protein Serine/T | 98.87 | |
| KOG4658 | 889 | consensus Apoptotic ATPase [Signal transduction me | 98.86 | |
| cd05625 | 382 | STKc_LATS1 Catalytic domain of the Protein Serine/ | 98.85 | |
| cd07880 | 343 | STKc_p38gamma_MAPK12 Catalytic domain of the Serin | 98.84 | |
| cd05580 | 290 | STKc_PKA Catalytic domain of the Protein Serine/Th | 98.83 | |
| cd07854 | 342 | STKc_MAPK4_6 Catalytic domain of the Serine/Threon | 98.83 | |
| cd05576 | 237 | STKc_RPK118_like Catalytic domain of the Protein S | 98.83 | |
| KOG1259 | 490 | consensus Nischarin, modulator of integrin alpha5 | 98.83 | |
| KOG0032 | 382 | consensus Ca2+/calmodulin-dependent protein kinase | 98.83 | |
| cd06653 | 264 | STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kina | 98.82 | |
| KOG0531 | 414 | consensus Protein phosphatase 1, regulatory subuni | 98.81 | |
| cd05581 | 280 | STKc_PDK1 Catalytic domain of the Protein Serine/T | 98.8 | |
| KOG0616 | 355 | consensus cAMP-dependent protein kinase catalytic | 98.8 | |
| KOG0574 | 502 | consensus STE20-like serine/threonine kinase MST [ | 98.79 | |
| cd05123 | 250 | STKc_AGC Catalytic domain of AGC family Protein Se | 98.79 | |
| KOG0195 | 448 | consensus Integrin-linked kinase [Signal transduct | 98.78 | |
| cd05613 | 290 | STKc_MSK1_N N-terminal catalytic domain of the Pro | 98.76 | |
| KOG1035 | 1351 | consensus eIF-2alpha kinase GCN2 [Translation, rib | 98.76 | |
| KOG0660 | 359 | consensus Mitogen-activated protein kinase [Signal | 98.75 | |
| KOG0600 | 560 | consensus Cdc2-related protein kinase [Cell cycle | 98.74 | |
| KOG0659 | 318 | consensus Cdk activating kinase (CAK)/RNA polymera | 98.67 | |
| KOG4717 | 864 | consensus Serine/threonine protein kinase [Signal | 98.66 | |
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 98.66 | |
| KOG1151 | 775 | consensus Tousled-like protein kinase [Signal tran | 98.65 | |
| KOG0667 | 586 | consensus Dual-specificity tyrosine-phosphorylatio | 98.64 | |
| KOG0671 | 415 | consensus LAMMER dual specificity kinases [Signal | 98.64 | |
| KOG0984 | 282 | consensus Mitogen-activated protein kinase (MAPK) | 98.62 | |
| KOG0594 | 323 | consensus Protein kinase PCTAIRE and related kinas | 98.61 | |
| KOG0690 | 516 | consensus Serine/threonine protein kinase [Signal | 98.6 | |
| KOG0585 | 576 | consensus Ca2+/calmodulin-dependent protein kinase | 98.59 | |
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 98.58 | |
| KOG1989 | 738 | consensus ARK protein kinase family [Signal transd | 98.55 | |
| KOG0663 | 419 | consensus Protein kinase PITSLRE and related kinas | 98.52 | |
| KOG0658 | 364 | consensus Glycogen synthase kinase-3 [Carbohydrate | 98.51 | |
| KOG0611 | 668 | consensus Predicted serine/threonine protein kinas | 98.49 | |
| KOG1027 | 903 | consensus Serine/threonine protein kinase and endo | 98.46 | |
| KOG0587 | 953 | consensus Traf2- and Nck-interacting kinase and re | 98.43 | |
| KOG1023 | 484 | consensus Natriuretic peptide receptor, guanylate | 98.41 | |
| KOG0695 | 593 | consensus Serine/threonine protein kinase [Signal | 98.41 | |
| KOG0608 | 1034 | consensus Warts/lats-like serine threonine kinases | 98.33 | |
| KOG0610 | 459 | consensus Putative serine/threonine protein kinase | 98.3 | |
| COG5238 | 388 | RNA1 Ran GTPase-activating protein (RanGAP) involv | 98.29 | |
| KOG2982 | 418 | consensus Uncharacterized conserved protein [Funct | 98.27 | |
| KOG1859 | 1096 | consensus Leucine-rich repeat proteins [General fu | 98.25 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 98.21 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 98.21 | |
| KOG1859 | 1096 | consensus Leucine-rich repeat proteins [General fu | 98.2 | |
| PLN03224 | 507 | probable serine/threonine protein kinase; Provisio | 98.2 | |
| KOG1290 | 590 | consensus Serine/threonine protein kinase [Signal | 98.18 | |
| KOG0586 | 596 | consensus Serine/threonine protein kinase [General | 98.18 | |
| KOG0612 | 1317 | consensus Rho-associated, coiled-coil containing p | 98.15 | |
| KOG0669 | 376 | consensus Cyclin T-dependent kinase CDK9 [Cell cyc | 98.13 | |
| COG5238 | 388 | RNA1 Ran GTPase-activating protein (RanGAP) involv | 98.12 | |
| cd00180 | 215 | PKc Catalytic domain of Protein Kinases. Protein K | 98.11 | |
| KOG1033 | 516 | consensus eIF-2alpha kinase PEK/EIF2AK3 [Translati | 98.1 | |
| KOG4250 | 732 | consensus TANK binding protein kinase TBK1 [Signal | 98.09 | |
| KOG4236 | 888 | consensus Serine/threonine protein kinase PKC mu/P | 97.99 | |
| KOG4579 | 177 | consensus Leucine-rich repeat (LRR) protein associ | 97.95 | |
| KOG0604 | 400 | consensus MAP kinase-activated protein kinase 2 [S | 97.94 | |
| KOG4579 | 177 | consensus Leucine-rich repeat (LRR) protein associ | 97.93 | |
| KOG2982 | 418 | consensus Uncharacterized conserved protein [Funct | 97.92 | |
| KOG0576 | 829 | consensus Mitogen-activated protein kinase kinase | 97.78 | |
| KOG0607 | 463 | consensus MAP kinase-interacting kinase and relate | 97.77 | |
| smart00221 | 225 | STYKc Protein kinase; unclassified specificity. Ph | 97.73 | |
| KOG0670 | 752 | consensus U4/U6-associated splicing factor PRP4 [R | 97.7 | |
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 97.6 | |
| KOG0665 | 369 | consensus Jun-N-terminal kinase (JNK) [Signal tran | 97.59 | |
| PRK15386 | 426 | type III secretion protein GogB; Provisional | 97.59 | |
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 97.58 | |
| KOG0590 | 601 | consensus Checkpoint kinase and related serine/thr | 97.57 | |
| KOG1644 | 233 | consensus U2-associated snRNP A' protein [RNA proc | 97.55 | |
| PRK15386 | 426 | type III secretion protein GogB; Provisional | 97.54 | |
| KOG0666 | 438 | consensus Cyclin C-dependent kinase CDK8 [Transcri | 97.53 | |
| KOG1345 | 378 | consensus Serine/threonine kinase [Signal transduc | 97.51 | |
| KOG0664 | 449 | consensus Nemo-like MAPK-related serine/threonine | 97.46 | |
| KOG1644 | 233 | consensus U2-associated snRNP A' protein [RNA proc | 97.43 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 97.33 | |
| KOG0606 | 1205 | consensus Microtubule-associated serine/threonine | 97.25 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 97.23 | |
| PF08263 | 43 | LRRNT_2: Leucine rich repeat N-terminal domain; In | 97.16 | |
| PF13306 | 129 | LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_ | 97.04 | |
| KOG2739 | 260 | consensus Leucine-rich acidic nuclear protein [Cel | 97.03 | |
| PF13306 | 129 | LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_ | 96.97 | |
| PF11721 | 174 | Malectin: Di-glucose binding within endoplasmic re | 96.95 | |
| KOG2739 | 260 | consensus Leucine-rich acidic nuclear protein [Cel | 96.95 | |
| COG0515 | 384 | SPS1 Serine/threonine protein kinase [General func | 96.92 | |
| KOG0603 | 612 | consensus Ribosomal protein S6 kinase [Signal tran | 96.92 | |
| KOG2123 | 388 | consensus Uncharacterized conserved protein [Funct | 96.81 | |
| KOG1152 | 772 | consensus Signal transduction serine/threonine kin | 96.7 | |
| KOG0662 | 292 | consensus Cyclin-dependent kinase CDK5 [Intracellu | 96.69 | |
| KOG2123 | 388 | consensus Uncharacterized conserved protein [Funct | 96.59 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 96.49 | |
| PF14531 | 288 | Kinase-like: Kinase-like; PDB: 3DZO_A 2W1Z_A 3BYV_ | 96.37 | |
| KOG1167 | 418 | consensus Serine/threonine protein kinase of the C | 96.23 | |
| KOG0668 | 338 | consensus Casein kinase II, alpha subunit [Signal | 96.07 | |
| KOG0601 | 524 | consensus Cyclin-dependent kinase WEE1 [Cell cycle | 95.41 | |
| KOG1187 | 361 | consensus Serine/threonine protein kinase [Signal | 95.2 | |
| KOG4341 | 483 | consensus F-box protein containing LRR [General fu | 95.14 | |
| KOG1947 | 482 | consensus Leucine rich repeat proteins, some prote | 95.11 | |
| KOG1266 | 458 | consensus Protein kinase [Signal transduction mech | 94.99 | |
| KOG1947 | 482 | consensus Leucine rich repeat proteins, some prote | 94.49 | |
| KOG4308 | 478 | consensus LRR-containing protein [Function unknown | 94.39 | |
| PF00560 | 22 | LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le | 94.27 | |
| KOG4308 | 478 | consensus LRR-containing protein [Function unknown | 94.1 | |
| PF00560 | 22 | LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le | 93.8 | |
| KOG4341 | 483 | consensus F-box protein containing LRR [General fu | 92.74 | |
| KOG0606 | 1205 | consensus Microtubule-associated serine/threonine | 92.32 | |
| KOG0473 | 326 | consensus Leucine-rich repeat protein [Function un | 91.87 | |
| PF08693 | 40 | SKG6: Transmembrane alpha-helix domain; InterPro: | 91.54 | |
| KOG0473 | 326 | consensus Leucine-rich repeat protein [Function un | 90.04 | |
| KOG4158 | 598 | consensus BRPK/PTEN-induced protein kinase [Signal | 88.49 | |
| KOG1164 | 322 | consensus Casein kinase (serine/threonine/tyrosine | 87.95 | |
| PF13504 | 17 | LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO | 85.73 | |
| COG4248 | 637 | Uncharacterized protein with protein kinase and he | 85.62 |
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-59 Score=584.49 Aligned_cols=322 Identities=30% Similarity=0.493 Sum_probs=219.0
Q ss_pred CCHHHHHHHHHHHHhCCCC--CCCCCcCCCCCCCCCCCCCcccCCCCCCCCCCeeccccCCCCCeeeEEEEEEcccCcCC
Q 038019 2 HDKHAVRALNSILQQWDAP--AVPLWNISGNPCSGSALNATDSEFESPNNNPAIVCNCTFDNGATCHITKLRVYGLNKKG 79 (866)
Q Consensus 2 ~~~~~~~~l~~~~~~~~~~--~~~~w~~~~~~C~~~~~~~~~~~~~~~~~~~~v~C~~~~~~~~~~~v~~L~l~~~~l~~ 79 (866)
++|+|++||++||+++.++ .+.+|+...++| .| .||.|+. ..+|+.|++++|++++
T Consensus 26 ~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~c----~w------------~gv~c~~------~~~v~~L~L~~~~i~~ 83 (968)
T PLN00113 26 LHAEELELLLSFKSSINDPLKYLSNWNSSADVC----LW------------QGITCNN------SSRVVSIDLSGKNISG 83 (968)
T ss_pred CCHHHHHHHHHHHHhCCCCcccCCCCCCCCCCC----cC------------cceecCC------CCcEEEEEecCCCccc
Confidence 6899999999999999755 367898777888 35 6999963 2479999999999999
Q ss_pred CCCcccCCCCCCCEEEccCCCCCCCCCcccc-CCCCcCEEeccCCcCCCCCCccccCCCCCCEeeccCCCCCCCCchhhc
Q 038019 80 VIPEELVTLQYLTVLKIDQNFFTGPLPSFIG-NLSRLMFLSFSHNDFSGPVPRELGNLKELTVLAFGTNNFSGALPPELG 158 (866)
Q Consensus 80 ~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~-~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~ 158 (866)
.++..|..+++|++|+|++|++++.+|..+. ++++|++|+|++|++++.+|. +.+++|++|+|++|.+++.+|..++
T Consensus 84 ~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~ 161 (968)
T PLN00113 84 KISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIG 161 (968)
T ss_pred cCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHh
Confidence 9998899999999999999999888887654 788888888888877766664 3456666666666666666666666
Q ss_pred CCCCccEEEeecCCCCCCChhhhhcCcCCCEEEecCCCCCCCCcccccCCCCCCeEEccCCCCCCCCchhhcCCCCCCEE
Q 038019 159 NLAKLEQLYIDSCGAGGEIPSTFAKLRNMQTLWASDNPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLESL 238 (866)
Q Consensus 159 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L 238 (866)
++++|++|+|++|.+.+.+|..|.++++|++|+|++|.+++.+|..++++++|+.|+|++|.+.+.+|..++++++|+.|
T Consensus 162 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 241 (968)
T PLN00113 162 SFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHL 241 (968)
T ss_pred cCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEE
Confidence 66666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred EccCccCCCCCchhhhcCCCCCceeccCcccccCCCcccCCCCCcCEEeeecCcCcccCCcccCCCCCCcEEECcCCCCc
Q 038019 239 QMSDIYNVSSSLDFVMSLKNLTDLSLRNALITGTIPFGIGELQMLQILDLSFNNLTGQIPATLFNIDSLEYLFLGNNSLS 318 (866)
Q Consensus 239 ~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~ 318 (866)
++++|.+....+..+..+++|+.|+|++|.+.+.+|..+..+++|+.|+|++|.+.+.+|..+..+++|++|++++|.++
T Consensus 242 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~ 321 (968)
T PLN00113 242 DLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFT 321 (968)
T ss_pred ECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccC
Confidence 66666555444445555666666666666665555555555555666666655555555555555555555555555555
Q ss_pred ccCCccc--CCCCCEEEeeCCCCCCccCccc
Q 038019 319 GTLPDQK--SENLQKIDLSHNHLSGTFPLWV 347 (866)
Q Consensus 319 g~~p~~~--~~~L~~L~Ls~N~l~g~~p~~~ 347 (866)
+.+|... .++|+.|++++|++++.+|.++
T Consensus 322 ~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l 352 (968)
T PLN00113 322 GKIPVALTSLPRLQVLQLWSNKFSGEIPKNL 352 (968)
T ss_pred CcCChhHhcCCCCCEEECcCCCCcCcCChHH
Confidence 5544332 2455555555555555555443
|
|
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-32 Score=344.63 Aligned_cols=313 Identities=33% Similarity=0.496 Sum_probs=283.9
Q ss_pred CeeeEEEEEEcccCcCCCCCcccCCCCCCCEEEccCCCCCCCCCccccCCCCcCEEeccCCcCCCCCCccccCCCCCCEe
Q 038019 63 ATCHITKLRVYGLNKKGVIPEELVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKELTVL 142 (866)
Q Consensus 63 ~~~~v~~L~l~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 142 (866)
...++++|++++|.+++.+|..|+++++|++|+|++|.+.+.+|..++++++|++|+|++|.+++.+|..++++++|++|
T Consensus 138 ~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 217 (968)
T PLN00113 138 SIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWI 217 (968)
T ss_pred ccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEE
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCCCCCCchhhcCCCCccEEEeecCCCCCCChhhhhcCcCCCEEEecCCCCCCCCcccccCCCCCCeEEccCCCCC
Q 038019 143 AFGTNNFSGALPPELGNLAKLEQLYIDSCGAGGEIPSTFAKLRNMQTLWASDNPFTGKIPDFIGNWTKLKSLRFQGNSFQ 222 (866)
Q Consensus 143 ~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~ 222 (866)
+|++|++++.+|..++++++|++|+|++|.+++.+|..|+++++|++|+|++|.+++.+|..+.++++|+.|+|++|.+.
T Consensus 218 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~ 297 (968)
T PLN00113 218 YLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLS 297 (968)
T ss_pred ECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchhhcCCCCCCEEEccCccCCCCCchhhhcCCCCCceeccCcccccCCCcccCCCCCcCEEeeecCcCcccCCcccC
Q 038019 223 GPIPSSLSKLASLESLQMSDIYNVSSSLDFVMSLKNLTDLSLRNALITGTIPFGIGELQMLQILDLSFNNLTGQIPATLF 302 (866)
Q Consensus 223 ~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~ 302 (866)
+.+|..+.++++|+.|++++|.+....+..+..+++|+.|+|++|.+++.+|..++.+++|+.|++++|++++.+|..+.
T Consensus 298 ~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~ 377 (968)
T PLN00113 298 GEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLC 377 (968)
T ss_pred cCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHh
Confidence 99999999999999999999988877777888999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcEEECcCCCCcccCCccc--CCCCCEEEeeCCCCCCccCcccccc--c-cccccccccccccCC-CccCCCccc
Q 038019 303 NIDSLEYLFLGNNSLSGTLPDQK--SENLQKIDLSHNHLSGTFPLWVNSE--L-QMNLAVNNFKFDISN-ISVFPGLNC 375 (866)
Q Consensus 303 ~l~~L~~L~L~~N~l~g~~p~~~--~~~L~~L~Ls~N~l~g~~p~~~~~~--~-~l~l~~N~~~~~~~~-~~~~p~l~~ 375 (866)
.+++|+.|++++|++.+.+|... .++|+.|++++|++++.+|..+... + .+++++|.+.+.... ...++.|..
T Consensus 378 ~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 456 (968)
T PLN00113 378 SSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQM 456 (968)
T ss_pred CcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcE
Confidence 99999999999999998888753 4789999999999999888766532 2 388888888875433 223444443
|
|
| >KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.8e-29 Score=268.45 Aligned_cols=275 Identities=23% Similarity=0.208 Sum_probs=137.2
Q ss_pred eEEEEEEcccCcCCCCCcccCCCCCCCEEEccCCCCCCCCCccccCCCCcCEEeccCCcCCCCCCccccCCCCCCEeecc
Q 038019 66 HITKLRVYGLNKKGVIPEELVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKELTVLAFG 145 (866)
Q Consensus 66 ~v~~L~l~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls 145 (866)
+++.|+|.+|-++..-..++..++.|++||||.|.|+.+.-.+|..-.++++|+|++|+|+...-+.|.++.+|.+|.|+
T Consensus 126 hl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLs 205 (873)
T KOG4194|consen 126 HLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLS 205 (873)
T ss_pred ceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecc
Confidence 44445555444444444445555555555555555543333344444455555555555554444555555555555555
Q ss_pred CCCCCCCCchhhcCCCCccEEEeecCCCCCCChhhhhcCcCCCEEEecCCCCCCCCcccccCCCCCCeEEccCCCCCCCC
Q 038019 146 TNNFSGALPPELGNLAKLEQLYIDSCGAGGEIPSTFAKLRNMQTLWASDNPFTGKIPDFIGNWTKLKSLRFQGNSFQGPI 225 (866)
Q Consensus 146 ~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~ 225 (866)
.|+++...+..|.+|++|+.|+|..|++....--+|.+|++|+.|.|..|.+...-...|..+.++++|+|..|+++..-
T Consensus 206 rNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn 285 (873)
T KOG4194|consen 206 RNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVN 285 (873)
T ss_pred cCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhh
Confidence 55555444444555555555555555554433344445555555555555444444444444555555555555555444
Q ss_pred chhhcCCCCCCEEEccCccCCCCCchhhhcCCCCCceeccCcccccCCCcccCCCCCcCEEeeecCcCcccCCcccCCCC
Q 038019 226 PSSLSKLASLESLQMSDIYNVSSSLDFVMSLKNLTDLSLRNALITGTIPFGIGELQMLQILDLSFNNLTGQIPATLFNID 305 (866)
Q Consensus 226 p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~ 305 (866)
..++.++++|+.|++++|.+..+.++.+.-.++|+.|+|++|.++...+..|..+..|+.|+|+.|.+...-...|..+.
T Consensus 286 ~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~ls 365 (873)
T KOG4194|consen 286 EGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLS 365 (873)
T ss_pred cccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhh
Confidence 44445555555555555555544444444455555555555555544444455555555555555555443334444455
Q ss_pred CCcEEECcCCCCcccCCcc-----cCCCCCEEEeeCCCCC
Q 038019 306 SLEYLFLGNNSLSGTLPDQ-----KSENLQKIDLSHNHLS 340 (866)
Q Consensus 306 ~L~~L~L~~N~l~g~~p~~-----~~~~L~~L~Ls~N~l~ 340 (866)
+|+.|||++|.+++.+.+. .+++|+.|+|.+|++.
T Consensus 366 sL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk 405 (873)
T KOG4194|consen 366 SLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLK 405 (873)
T ss_pred hhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceee
Confidence 5555555555555433321 1245555555555554
|
|
| >KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.8e-29 Score=264.70 Aligned_cols=275 Identities=21% Similarity=0.189 Sum_probs=204.1
Q ss_pred eeEEEEEEcccCcCCCCCcccCCCCCCCEEEccCCCCCCCCCccccCCCCcCEEeccCCcCCCCCCccccCCCCCCEeec
Q 038019 65 CHITKLRVYGLNKKGVIPEELVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKELTVLAF 144 (866)
Q Consensus 65 ~~v~~L~l~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 144 (866)
...+.|++++|.+...-+..|-++++|+.++|.+|.++ .+|.......+|+.|+|.+|.|+..-.+++.-++.|+.|||
T Consensus 78 ~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDL 156 (873)
T KOG4194|consen 78 SQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDL 156 (873)
T ss_pred cceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhh
Confidence 46778999999999888888999999999999999987 67876666677999999999888777778888888888888
Q ss_pred cCCCCCCCCchhhcCCCCccEEEeecCCCCCCChhhhhcCcCCCEEEecCCCCCCCCcccccCCCCCCeEEccCCCCCCC
Q 038019 145 GTNNFSGALPPELGNLAKLEQLYIDSCGAGGEIPSTFAKLRNMQTLWASDNPFTGKIPDFIGNWTKLKSLRFQGNSFQGP 224 (866)
Q Consensus 145 s~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ 224 (866)
|.|.|+...-..|..-.++++|+|++|.++....+.|.++.+|.+|.|+.|+++...+..|.+|++|+.|+|..|+|.-.
T Consensus 157 SrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~iriv 236 (873)
T KOG4194|consen 157 SRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIV 236 (873)
T ss_pred hhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeee
Confidence 88888866666777778888888888888888888888888888888888888877777788888888888888887744
Q ss_pred CchhhcCCCCCCEEEccCccCCCCCchhhhcCCCCCceeccCcccccCCCcccCCCCCcCEEeeecCcCcccCCcccCCC
Q 038019 225 IPSSLSKLASLESLQMSDIYNVSSSLDFVMSLKNLTDLSLRNALITGTIPFGIGELQMLQILDLSFNNLTGQIPATLFNI 304 (866)
Q Consensus 225 ~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l 304 (866)
--..|.++++|+.|.|..|++.......|..+.++++|+|..|++...-..++-.+++|+.|+|++|.|....++++...
T Consensus 237 e~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Wsft 316 (873)
T KOG4194|consen 237 EGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFT 316 (873)
T ss_pred hhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhc
Confidence 45567777777777777777665555566666666666666666665555566666666666666666666666666666
Q ss_pred CCCcEEECcCCCCcccCCccc--CCCCCEEEeeCCCCC
Q 038019 305 DSLEYLFLGNNSLSGTLPDQK--SENLQKIDLSHNHLS 340 (866)
Q Consensus 305 ~~L~~L~L~~N~l~g~~p~~~--~~~L~~L~Ls~N~l~ 340 (866)
++|+.|+|++|+++...+..+ ...|+.|+|++|.++
T Consensus 317 qkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~ 354 (873)
T KOG4194|consen 317 QKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSID 354 (873)
T ss_pred ccceeEeccccccccCChhHHHHHHHhhhhcccccchH
Confidence 666666666666664333221 134444444444443
|
|
| >KOG1187 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.3e-27 Score=257.37 Aligned_cols=176 Identities=36% Similarity=0.508 Sum_probs=143.6
Q ss_pred CCCCccEEEEeehHHHHHHHHHHHHHhhheeccCCCchhhhccCCCCCcccCHHHHHHHhcCCccccccCC-CCceeEEE
Q 038019 596 NKNHTGLIVGIAVPLGILGLIVISIMFYLWREKDNDDEEVLVGIGSKPNIFGYAELRSATKDFNRSNKLGE-GGYGPVYK 674 (866)
Q Consensus 596 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dF~~~~~lg~-g~~g~vy~ 674 (866)
|..+..|++++|.|+.+++- .....++|+.....|||+++++.+++.|||+++.... ... +..
T Consensus 173 W~~R~kIa~g~A~gL~yLH~--------------~~~~~iiHrDiKssNILLD~~~~aKlsDFGLa~~~~~~~~~--~~~ 236 (361)
T KOG1187|consen 173 WETRLKIALGAARGLAYLHE--------------GCPPPIIHRDIKSSNILLDEDFNAKLSDFGLAKLGPEGDTS--VST 236 (361)
T ss_pred HHHHHHHHHHHHHHHHHHcc--------------CCCCCEecCCCCHHHeeECCCCCEEccCccCcccCCccccc--eee
Confidence 34455788888888776631 1112345555566799999999999999999976654 322 221
Q ss_pred eecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCCchhhhhcHHHHHHHHhhcCCcccccCCccc--ccC
Q 038019 675 VTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSLDMEKIYLLEWAWNLHENNQSFGLVDPTLT--EFN 752 (866)
Q Consensus 675 ~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~--~~~ 752 (866)
...||+||+||||+.++++|+|+|||||||||+||+|||+|++...+.+...+++|++..+.++++.+++||++. ++.
T Consensus 237 ~~~gt~gY~~PEy~~~g~lt~KsDVySFGVvllElitgr~~~d~~~~~~~~~l~~w~~~~~~~~~~~eiiD~~l~~~~~~ 316 (361)
T KOG1187|consen 237 TVMGTFGYLAPEYASTGKLTEKSDVYSFGVVLLELITGRKAVDQSRPRGELSLVEWAKPLLEEGKLREIVDPRLKEGEYP 316 (361)
T ss_pred ecCCCCccCChhhhccCCcCcccccccchHHHHHHHhCCcccCCCCCcccccHHHHHHHHHHCcchhheeCCCccCCCCC
Confidence 117999999999999999999999999999999999999999976655566799999999999999999999984 455
Q ss_pred H-HHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhcC
Q 038019 753 D-KEALRVIGVALLCTQTSPMMRPPMSRVVAMLAGD 787 (866)
Q Consensus 753 ~-~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~~~ 787 (866)
. +++.+++++|++|++.+|.+||+|.||+++|+..
T Consensus 317 ~~~~~~~~~~~a~~C~~~~~~~RP~m~~Vv~~L~~~ 352 (361)
T KOG1187|consen 317 DEKEVKKLAELALRCLRPDPKERPTMSQVVKELEGI 352 (361)
T ss_pred hHHHHHHHHHHHHHHcCcCCCcCcCHHHHHHHHHhh
Confidence 4 6899999999999999999999999999999643
|
|
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.1e-26 Score=249.63 Aligned_cols=294 Identities=24% Similarity=0.344 Sum_probs=235.2
Q ss_pred eeeEEEEEEcccCcC-CCCCcccCCCCCCCEEEccCCCCCCCCCccccCCCCcCEEeccCCcCCCCCCccccCCCCCCEe
Q 038019 64 TCHITKLRVYGLNKK-GVIPEELVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKELTVL 142 (866)
Q Consensus 64 ~~~v~~L~l~~~~l~-~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 142 (866)
..-|+.+++++|.++ +.+|.....++.++.|.|...++. .+|..++.|.+|++|.+++|++. .+-.++..|+.|+.+
T Consensus 6 LpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LRsv 83 (1255)
T KOG0444|consen 6 LPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLRSV 83 (1255)
T ss_pred cceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhHHH
Confidence 445778889999998 458888889999999999888886 78999999999999999999887 566778888999999
Q ss_pred eccCCCCC-CCCchhhcCCCCccEEEeecCCCCCCChhhhhcCcCCCEEEecCCCCCCCCcccccCCCCCCeEEccCCCC
Q 038019 143 AFGTNNFS-GALPPELGNLAKLEQLYIDSCGAGGEIPSTFAKLRNMQTLWASDNPFTGKIPDFIGNWTKLKSLRFQGNSF 221 (866)
Q Consensus 143 ~Ls~N~l~-~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l 221 (866)
++..|++. .-+|..+..|..|..|+|++|++. ..|..+..-+++..|+|++|+|..+....|-+|+.|-.|+|++|++
T Consensus 84 ~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrL 162 (1255)
T KOG0444|consen 84 IVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRL 162 (1255)
T ss_pred hhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchh
Confidence 99998884 357888889999999999999986 5688888888999999999999854445567888899999999998
Q ss_pred CCCCchhhcCCCCCCEEEccCccCCCCCchhhhcCCCCCceeccCcccc-cCCCcccCCCCCcCEEeeecCcCcccCCcc
Q 038019 222 QGPIPSSLSKLASLESLQMSDIYNVSSSLDFVMSLKNLTDLSLRNALIT-GTIPFGIGELQMLQILDLSFNNLTGQIPAT 300 (866)
Q Consensus 222 ~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~ 300 (866)
. .+|..+..+..|+.|.|++|.+.......+..+++|+.|.+++.+-+ ..+|.++..+.+|..+||+.|.+. ..|+.
T Consensus 163 e-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPec 240 (1255)
T KOG0444|consen 163 E-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPEC 240 (1255)
T ss_pred h-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHH
Confidence 7 67778888999999999998887766667777788888888876544 467888888888999999999887 78888
Q ss_pred cCCCCCCcEEECcCCCCcccCCc-ccCCCCCEEEeeCCCCCCccCccccccc---cccccccccccc
Q 038019 301 LFNIDSLEYLFLGNNSLSGTLPD-QKSENLQKIDLSHNHLSGTFPLWVNSEL---QMNLAVNNFKFD 363 (866)
Q Consensus 301 l~~l~~L~~L~L~~N~l~g~~p~-~~~~~L~~L~Ls~N~l~g~~p~~~~~~~---~l~l~~N~~~~~ 363 (866)
+.++++|+.|+|++|+++..-.. ....+|++|+||.|+++ .+|..+.... .|.+..|++.++
T Consensus 241 ly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~Fe 306 (1255)
T KOG0444|consen 241 LYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFE 306 (1255)
T ss_pred HhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCccccc
Confidence 88888999999999988853221 23467888888888887 4666655332 266666665543
|
|
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.8e-26 Score=247.88 Aligned_cols=247 Identities=24% Similarity=0.344 Sum_probs=134.8
Q ss_pred eeEEEEEEcccCcCC-CCCcccCCCCCCCEEEccCCCCCCCCCccccCCCCcCEEeccCCcCCCCCCc-cccCCCCCCEe
Q 038019 65 CHITKLRVYGLNKKG-VIPEELVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPR-ELGNLKELTVL 142 (866)
Q Consensus 65 ~~v~~L~l~~~~l~~-~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~-~l~~l~~L~~L 142 (866)
.+++++.+..|++.. .||+.|..|..|.+||||+|++. ..|..+..-+++-.|+||+|+|. .||. -|.+|+.|-.|
T Consensus 78 p~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfL 155 (1255)
T KOG0444|consen 78 PRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFL 155 (1255)
T ss_pred hhhHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhh
Confidence 345555566666543 36667777777777777777776 56666777777777777777776 3443 34567777777
Q ss_pred eccCCCCCCCCchhhcCCCCccEEEeecCCCCCCChhhhhcCcCCCEEEecCCCCC-CCCcccccCCCCCCeEEccCCCC
Q 038019 143 AFGTNNFSGALPPELGNLAKLEQLYIDSCGAGGEIPSTFAKLRNMQTLWASDNPFT-GKIPDFIGNWTKLKSLRFQGNSF 221 (866)
Q Consensus 143 ~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~-~~~p~~l~~l~~L~~L~L~~N~l 221 (866)
|||+|.+. .+|+.+..|..|+.|.|++|.+....-..+..|++|+.|.+++.+-+ ..+|..+..+.+|..++|+.|.+
T Consensus 156 DLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~L 234 (1255)
T KOG0444|consen 156 DLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNL 234 (1255)
T ss_pred ccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCC
Confidence 77777775 55666677777777777776554332233334445555555554332 23455555555555555555555
Q ss_pred CCCCchhhcCCCCCCEEEccCccCCCCCchhhhcCCCCCceeccCcccccCCCcccCCCCCcCEEeeecCcCc-ccCCcc
Q 038019 222 QGPIPSSLSKLASLESLQMSDIYNVSSSLDFVMSLKNLTDLSLRNALITGTIPFGIGELQMLQILDLSFNNLT-GQIPAT 300 (866)
Q Consensus 222 ~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~-~~~p~~ 300 (866)
. .+|..+.++.+|+.|+|++|.+..... ....+.+|++|+|++|+++ .+|..+.++++|+.|.+.+|+++ .-+|..
T Consensus 235 p-~vPecly~l~~LrrLNLS~N~iteL~~-~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSG 311 (1255)
T KOG0444|consen 235 P-IVPECLYKLRNLRRLNLSGNKITELNM-TEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSG 311 (1255)
T ss_pred C-cchHHHhhhhhhheeccCcCceeeeec-cHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccc
Confidence 5 455555555555555555555442221 1122334444444444444 33444444444444444444443 223444
Q ss_pred cCCCCCCcEEECcCCCC
Q 038019 301 LFNIDSLEYLFLGNNSL 317 (866)
Q Consensus 301 l~~l~~L~~L~L~~N~l 317 (866)
++.+.+|+.+...+|.+
T Consensus 312 IGKL~~Levf~aanN~L 328 (1255)
T KOG0444|consen 312 IGKLIQLEVFHAANNKL 328 (1255)
T ss_pred hhhhhhhHHHHhhcccc
Confidence 44444444444444443
|
|
| >KOG0472 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.2e-23 Score=216.60 Aligned_cols=263 Identities=28% Similarity=0.375 Sum_probs=162.6
Q ss_pred EEEEEEcccCcCCCCCcccCCCCCCCEEEccCCCCCCCCCccccCCCCcCEEeccCCcCCCCCCccccCCCCCCEeeccC
Q 038019 67 ITKLRVYGLNKKGVIPEELVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKELTVLAFGT 146 (866)
Q Consensus 67 v~~L~l~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~ 146 (866)
++.|.+++|.+... .+.+.++..|.+|++.+|++. ..|++++.+..++.|+.++|+++ .+|.+++++.+|..|+.++
T Consensus 47 l~~lils~N~l~~l-~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~ 123 (565)
T KOG0472|consen 47 LQKLILSHNDLEVL-REDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSS 123 (565)
T ss_pred hhhhhhccCchhhc-cHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhccc
Confidence 45566666665533 334666666666666666665 45666666666666666666665 5666666666666666666
Q ss_pred CCCCCCCchhhcCCCCccEEEeecCCCCCCChhhhhcCcCCCEEEecCCCCCCCCcccccCCCCCCeEEccCCCCCCCCc
Q 038019 147 NNFSGALPPELGNLAKLEQLYIDSCGAGGEIPSTFAKLRNMQTLWASDNPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIP 226 (866)
Q Consensus 147 N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p 226 (866)
|.+. .+|++++.+..|+.|+..+|+++. .|..+..+.+|..|++.+|++....|+.+. ++.|++|+...|-+. .+|
T Consensus 124 n~~~-el~~~i~~~~~l~dl~~~~N~i~s-lp~~~~~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~L~-tlP 199 (565)
T KOG0472|consen 124 NELK-ELPDSIGRLLDLEDLDATNNQISS-LPEDMVNLSKLSKLDLEGNKLKALPENHIA-MKRLKHLDCNSNLLE-TLP 199 (565)
T ss_pred ccee-ecCchHHHHhhhhhhhcccccccc-CchHHHHHHHHHHhhccccchhhCCHHHHH-HHHHHhcccchhhhh-cCC
Confidence 6665 455666666666666666666653 455566666666666666666644444443 666666666666655 566
Q ss_pred hhhcCCCCCCEEEccCccCCCCCchhhhcCCCCCceeccCcccccCCCcc-cCCCCCcCEEeeecCcCcccCCcccCCCC
Q 038019 227 SSLSKLASLESLQMSDIYNVSSSLDFVMSLKNLTDLSLRNALITGTIPFG-IGELQMLQILDLSFNNLTGQIPATLFNID 305 (866)
Q Consensus 227 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~ 305 (866)
..++.+.+|..|++..|++...+ .|.+++.|.+|.++.|++. .+|.. ..++++|..|||..|+++ +.|+.+.-+.
T Consensus 200 ~~lg~l~~L~~LyL~~Nki~~lP--ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLr 275 (565)
T KOG0472|consen 200 PELGGLESLELLYLRRNKIRFLP--EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLR 275 (565)
T ss_pred hhhcchhhhHHHHhhhcccccCC--CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHhh
Confidence 66666666666666666654333 5566666666666666665 33333 336666677777777766 5666666666
Q ss_pred CCcEEECcCCCCcccCCcccCCCCCEEEeeCCCCC
Q 038019 306 SLEYLFLGNNSLSGTLPDQKSENLQKIDLSHNHLS 340 (866)
Q Consensus 306 ~L~~L~L~~N~l~g~~p~~~~~~L~~L~Ls~N~l~ 340 (866)
+|.+||+++|.+++..+.-.--+|+.|-+-+|.+.
T Consensus 276 sL~rLDlSNN~is~Lp~sLgnlhL~~L~leGNPlr 310 (565)
T KOG0472|consen 276 SLERLDLSNNDISSLPYSLGNLHLKFLALEGNPLR 310 (565)
T ss_pred hhhhhcccCCccccCCcccccceeeehhhcCCchH
Confidence 77777777777765443322125666666666654
|
|
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.7e-19 Score=212.64 Aligned_cols=321 Identities=20% Similarity=0.276 Sum_probs=211.4
Q ss_pred CCHHHHHHHHHHHHhCCCCC-C----CCCcCCCCCCCCCCCCCcccCCCC---CCCCCCeeccccCCCCCeeeEEEEEEc
Q 038019 2 HDKHAVRALNSILQQWDAPA-V----PLWNISGNPCSGSALNATDSEFES---PNNNPAIVCNCTFDNGATCHITKLRVY 73 (866)
Q Consensus 2 ~~~~~~~~l~~~~~~~~~~~-~----~~w~~~~~~C~~~~~~~~~~~~~~---~~~~~~v~C~~~~~~~~~~~v~~L~l~ 73 (866)
|.|+|++.++.+.+.+..|. . +.|+-+.++|-.... ..+..+ ...+.-|.|.. ..++++...
T Consensus 60 ~~~~~~~~~~~~~~~l~~p~~~~~~~~~~~~~~~fc~~~~~---~~~~l~~~~~~~~~tv~~~~-------~~vt~l~~~ 129 (754)
T PRK15370 60 ASPEEIKSKFECLRMLAFPAYADNIQYSRGGADQYCILSEN---SQEILSIVFNTEGYTVEGGG-------KSVTYTRVT 129 (754)
T ss_pred CCHHHHHHHHHHHHHhcCCchhhccccccCCCCcccccCCc---chhhheeeecCCceEEecCC-------Ccccccccc
Confidence 67899999999999998773 3 449878899942110 000000 01233455642 235555544
Q ss_pred ccCcCCC---------------------CC-------ccc-----CCCCCCCEEEccCCCCCCCCCccccCCCCcCEEec
Q 038019 74 GLNKKGV---------------------IP-------EEL-----VTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSF 120 (866)
Q Consensus 74 ~~~l~~~---------------------~p-------~~l-----~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 120 (866)
+...... .+ ..+ .-..+...|+|+++.++ .+|..+. ++|+.|+|
T Consensus 130 g~~~~~~~~~~~~~~~~~~~w~~w~~~~~~~~~~~r~~a~~r~~~Cl~~~~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~L 206 (754)
T PRK15370 130 ESEQASSASGSKDAVNYELIWSEWVKEAPAKEAANREEAVQRMRDCLKNNKTELRLKILGLT-TIPACIP--EQITTLIL 206 (754)
T ss_pred cccccccCCCCCChhhHHHHHHHHHhcCCCCccccHHHHHHHHHhhcccCceEEEeCCCCcC-cCCcccc--cCCcEEEe
Confidence 3211100 00 000 11245778888888887 4666553 57888999
Q ss_pred cCCcCCCCCCccccCCCCCCEeeccCCCCCCCCchhhcCCCCccEEEeecCCCCCCChhhhhcCcCCCEEEecCCCCCCC
Q 038019 121 SHNDFSGPVPRELGNLKELTVLAFGTNNFSGALPPELGNLAKLEQLYIDSCGAGGEIPSTFAKLRNMQTLWASDNPFTGK 200 (866)
Q Consensus 121 s~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ 200 (866)
++|+|+ .+|..+. .+|++|+|++|+++ .+|..+. .+|+.|+|++|++. .+|..+. ++|+.|+|++|+++ .
T Consensus 207 s~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~ 276 (754)
T PRK15370 207 DNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKIS-C 276 (754)
T ss_pred cCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEECcCCccC-c
Confidence 999888 5666554 58889999988887 4566554 47888999888887 5566654 57888999988888 4
Q ss_pred CcccccCCCCCCeEEccCCCCCCCCchhhcCCCCCCEEEccCccCCCCCchhhhcCCCCCceeccCcccccCCCcccCCC
Q 038019 201 IPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLESLQMSDIYNVSSSLDFVMSLKNLTDLSLRNALITGTIPFGIGEL 280 (866)
Q Consensus 201 ~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l 280 (866)
+|..+. ++|+.|+|++|+|++ +|..+. ++|+.|++++|.+....... .++|+.|++++|.+++ +|..+.
T Consensus 277 LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt~LP~~l---~~sL~~L~Ls~N~Lt~-LP~~l~-- 345 (754)
T PRK15370 277 LPENLP--EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLTALPETL---PPGLKTLEAGENALTS-LPASLP-- 345 (754)
T ss_pred cccccC--CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCccccCCccc---cccceeccccCCcccc-CChhhc--
Confidence 666554 478889999988884 444332 46788888887776433211 2578888888888875 555443
Q ss_pred CCcCEEeeecCcCcccCCcccCCCCCCcEEECcCCCCcccCCcccCCCCCEEEeeCCCCCCccCccccc-------cccc
Q 038019 281 QMLQILDLSFNNLTGQIPATLFNIDSLEYLFLGNNSLSGTLPDQKSENLQKIDLSHNHLSGTFPLWVNS-------ELQM 353 (866)
Q Consensus 281 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~~p~~~~~~L~~L~Ls~N~l~g~~p~~~~~-------~~~l 353 (866)
++|+.|++++|+|+ .+|..+. ++|+.|+|++|+|+ .+|......|+.|++++|+|+ .+|..+.. ...+
T Consensus 346 ~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt-~LP~~l~~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L 420 (754)
T PRK15370 346 PELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALT-NLPENLPAALQIMQASRNNLV-RLPESLPHFRGEGPQPTRI 420 (754)
T ss_pred CcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCC-CCCHhHHHHHHHHhhccCCcc-cCchhHHHHhhcCCCccEE
Confidence 68888888888887 4565553 67888888888888 455555567888888888887 45543321 1237
Q ss_pred cccccccc
Q 038019 354 NLAVNNFK 361 (866)
Q Consensus 354 ~l~~N~~~ 361 (866)
++.+|.++
T Consensus 421 ~L~~Npls 428 (754)
T PRK15370 421 IVEYNPFS 428 (754)
T ss_pred EeeCCCcc
Confidence 77777775
|
|
| >KOG0472 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.82 E-value=5.5e-23 Score=211.85 Aligned_cols=243 Identities=26% Similarity=0.391 Sum_probs=196.4
Q ss_pred eeEEEEEEcccCcCCCCCcccCCCCCCCEEEccCCCCCCCCCccccCCCCcCEEeccCCcCCCCCCccccCCCCCCEeec
Q 038019 65 CHITKLRVYGLNKKGVIPEELVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKELTVLAF 144 (866)
Q Consensus 65 ~~v~~L~l~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 144 (866)
..++.|++.+|+++ .+|++++.+..++.|+.++|++. .+|..++++.+|+.|++++|.+. .+|+.++.+..|+.|+.
T Consensus 68 ~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~-el~~~i~~~~~l~dl~~ 144 (565)
T KOG0472|consen 68 ACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNELK-ELPDSIGRLLDLEDLDA 144 (565)
T ss_pred cceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhcccccee-ecCchHHHHhhhhhhhc
Confidence 45777888888776 46777888888888888888887 67888888888888888888887 67778888888888888
Q ss_pred cCCCCCCCCchhhcCCCCccEEEeecCCCCCCChhhhhcCcCCCEEEecCCCCCCCCcccccCCCCCCeEEccCCCCCCC
Q 038019 145 GTNNFSGALPPELGNLAKLEQLYIDSCGAGGEIPSTFAKLRNMQTLWASDNPFTGKIPDFIGNWTKLKSLRFQGNSFQGP 224 (866)
Q Consensus 145 s~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ 224 (866)
.+|+++ ..|+.++++.+|..|++.+|++....|..+. |+.|++|+...|.++ .+|+.++.+.+|..|+|..|++. .
T Consensus 145 ~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~ 220 (565)
T KOG0472|consen 145 TNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHIA-MKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIR-F 220 (565)
T ss_pred cccccc-cCchHHHHHHHHHHhhccccchhhCCHHHHH-HHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcccc-c
Confidence 888887 6677888888888888888888776666555 888888888888776 67888888888888888888887 4
Q ss_pred CchhhcCCCCCCEEEccCccCCCCCchhhhcCCCCCceeccCcccccCCCcccCCCCCcCEEeeecCcCcccCCcccCCC
Q 038019 225 IPSSLSKLASLESLQMSDIYNVSSSLDFVMSLKNLTDLSLRNALITGTIPFGIGELQMLQILDLSFNNLTGQIPATLFNI 304 (866)
Q Consensus 225 ~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l 304 (866)
+| .|..+..|.+|+++.|.+..........+++|..|||+.|+++ ..|..+..+.+|..||+++|.|+ ..|.+++++
T Consensus 221 lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl 297 (565)
T KOG0472|consen 221 LP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPYSLGNL 297 (565)
T ss_pred CC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccc-cCCcccccc
Confidence 55 7888888888888888877777777778888888888888887 66777888888888888888887 567778888
Q ss_pred CCCcEEECcCCCCc
Q 038019 305 DSLEYLFLGNNSLS 318 (866)
Q Consensus 305 ~~L~~L~L~~N~l~ 318 (866)
+|+.|-+.+|.+.
T Consensus 298 -hL~~L~leGNPlr 310 (565)
T KOG0472|consen 298 -HLKFLALEGNPLR 310 (565)
T ss_pred -eeeehhhcCCchH
Confidence 8888888888875
|
|
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=99.81 E-value=8.3e-19 Score=221.18 Aligned_cols=258 Identities=23% Similarity=0.295 Sum_probs=138.4
Q ss_pred CCCcccCCCC-CCCEEEccCCCCCCCCCccccCCCCcCEEeccCCcCCCCCCccccCCCCCCEeeccCCCCCCCCchhhc
Q 038019 80 VIPEELVTLQ-YLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKELTVLAFGTNNFSGALPPELG 158 (866)
Q Consensus 80 ~~p~~l~~l~-~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~ 158 (866)
.+|..|..++ +|+.|++.++.+. .+|..| ...+|++|+|.+|++. .++..+..+++|++|+|++|.....+| .++
T Consensus 579 ~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls 654 (1153)
T PLN03210 579 HLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIP-DLS 654 (1153)
T ss_pred ecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCC-ccc
Confidence 3455554443 4566666555554 445444 3455666666665554 345555555666666665554333444 355
Q ss_pred CCCCccEEEeecCCCCCCChhhhhcCcCCCEEEecCCCCCCCCcccccCCCCCCeEEccCCCCCCCCchhhcCCCCCCEE
Q 038019 159 NLAKLEQLYIDSCGAGGEIPSTFAKLRNMQTLWASDNPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLESL 238 (866)
Q Consensus 159 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L 238 (866)
.+++|+.|+|++|.....+|..+..+++|+.|++++|.....+|..+ ++++|+.|+|++|...+.+|.. ..+|+.|
T Consensus 655 ~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L 730 (1153)
T PLN03210 655 MATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWL 730 (1153)
T ss_pred cCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCee
Confidence 55566666665555555555555566666666665554333444433 4555555555555443333321 2344455
Q ss_pred EccCccCCCCCc-----------------------------hhhhcCCCCCceeccCcccccCCCcccCCCCCcCEEeee
Q 038019 239 QMSDIYNVSSSL-----------------------------DFVMSLKNLTDLSLRNALITGTIPFGIGELQMLQILDLS 289 (866)
Q Consensus 239 ~l~~n~~~~~~~-----------------------------~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls 289 (866)
++++|.+...+. ......++|+.|+|++|.....+|..++++++|+.|+|+
T Consensus 731 ~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls 810 (1153)
T PLN03210 731 DLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIE 810 (1153)
T ss_pred ecCCCccccccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECC
Confidence 554444322111 011223466666776666666666666777777777776
Q ss_pred cCcCcccCCcccCCCCCCcEEECcCCCCcccCCcccCCCCCEEEeeCCCCCCccCcccc
Q 038019 290 FNNLTGQIPATLFNIDSLEYLFLGNNSLSGTLPDQKSENLQKIDLSHNHLSGTFPLWVN 348 (866)
Q Consensus 290 ~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~~p~~~~~~L~~L~Ls~N~l~g~~p~~~~ 348 (866)
+|...+.+|..+ .+++|+.|+|++|.....+|. ...+|+.|+|++|.++ .+|.++.
T Consensus 811 ~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~-~~~nL~~L~Ls~n~i~-~iP~si~ 866 (1153)
T PLN03210 811 NCINLETLPTGI-NLESLESLDLSGCSRLRTFPD-ISTNISDLNLSRTGIE-EVPWWIE 866 (1153)
T ss_pred CCCCcCeeCCCC-CccccCEEECCCCCccccccc-cccccCEeECCCCCCc-cChHHHh
Confidence 665444555544 566677777776655444443 2346677777777665 3555443
|
syringae 6; Provisional |
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.9e-19 Score=208.24 Aligned_cols=255 Identities=25% Similarity=0.262 Sum_probs=196.9
Q ss_pred EEEEEEcccCcCCCCCcccCCCCCCCEEEccCCCCCCCCCccccCCCCcCEEeccCCcCCCCCCccccCCCCCCEeeccC
Q 038019 67 ITKLRVYGLNKKGVIPEELVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKELTVLAFGT 146 (866)
Q Consensus 67 v~~L~l~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~ 146 (866)
-..|+++.++++ .+|+.+. .+|+.|+|++|+|+. +|. .+++|++|+|++|+|+ .+|.. .++|+.|+|++
T Consensus 203 ~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~Ls~ 271 (788)
T PRK15387 203 NAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLT-SLPVL---PPGLLELSIFS 271 (788)
T ss_pred CcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccC-cccCc---ccccceeeccC
Confidence 356899999998 6888776 489999999999984 664 3589999999999998 45643 46899999999
Q ss_pred CCCCCCCchhhcCCCCccEEEeecCCCCCCChhhhhcCcCCCEEEecCCCCCCCCcccccCCCCCCeEEccCCCCCCCCc
Q 038019 147 NNFSGALPPELGNLAKLEQLYIDSCGAGGEIPSTFAKLRNMQTLWASDNPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIP 226 (866)
Q Consensus 147 N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p 226 (866)
|.++ .+|.. ..+|+.|+|++|+++. +|. .+++|+.|+|++|++++ +|... .+|+.|++++|.+++ +|
T Consensus 272 N~L~-~Lp~l---p~~L~~L~Ls~N~Lt~-LP~---~p~~L~~LdLS~N~L~~-Lp~lp---~~L~~L~Ls~N~L~~-LP 338 (788)
T PRK15387 272 NPLT-HLPAL---PSGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLAS-LPALP---SELCKLWAYNNQLTS-LP 338 (788)
T ss_pred Cchh-hhhhc---hhhcCEEECcCCcccc-ccc---cccccceeECCCCcccc-CCCCc---ccccccccccCcccc-cc
Confidence 9987 44543 3678899999999985 443 24789999999999985 45432 468889999999985 55
Q ss_pred hhhcCCCCCCEEEccCccCCCCCchhhhcCCCCCceeccCcccccCCCcccCCCCCcCEEeeecCcCcccCCcccCCCCC
Q 038019 227 SSLSKLASLESLQMSDIYNVSSSLDFVMSLKNLTDLSLRNALITGTIPFGIGELQMLQILDLSFNNLTGQIPATLFNIDS 306 (866)
Q Consensus 227 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~ 306 (866)
.. ..+|+.|+|++|.+...+. ..++|+.|++++|.++. +|.. ..+|+.|+|++|+|++ +|.. .++
T Consensus 339 ~l---p~~Lq~LdLS~N~Ls~LP~----lp~~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt~-LP~l---~s~ 403 (788)
T PRK15387 339 TL---PSGLQELSVSDNQLASLPT----LPSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLTS-LPVL---PSE 403 (788)
T ss_pred cc---ccccceEecCCCccCCCCC----CCcccceehhhcccccc-Cccc---ccccceEEecCCcccC-CCCc---ccC
Confidence 32 2579999999998875432 13578899999999985 5543 3579999999999984 5543 367
Q ss_pred CcEEECcCCCCcccCCcccCCCCCEEEeeCCCCCCccCcccccc--c-cccccccccccc
Q 038019 307 LEYLFLGNNSLSGTLPDQKSENLQKIDLSHNHLSGTFPLWVNSE--L-QMNLAVNNFKFD 363 (866)
Q Consensus 307 L~~L~L~~N~l~g~~p~~~~~~L~~L~Ls~N~l~g~~p~~~~~~--~-~l~l~~N~~~~~ 363 (866)
|+.|++++|+|++ +|. ...+|+.|++++|+|+ .+|..+... + .++|++|+|++.
T Consensus 404 L~~LdLS~N~Lss-IP~-l~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~ 460 (788)
T PRK15387 404 LKELMVSGNRLTS-LPM-LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSER 460 (788)
T ss_pred CCEEEccCCcCCC-CCc-chhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCch
Confidence 9999999999985 564 3457899999999998 678765532 2 389999999865
|
|
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=99.79 E-value=2e-18 Score=217.76 Aligned_cols=301 Identities=22% Similarity=0.205 Sum_probs=227.2
Q ss_pred eeEEEEEEcccCcCC--CCCcccCCCCCCCEEEccCCC------CCCCCCccccCCC-CcCEEeccCCcCCCCCCccccC
Q 038019 65 CHITKLRVYGLNKKG--VIPEELVTLQYLTVLKIDQNF------FTGPLPSFIGNLS-RLMFLSFSHNDFSGPVPRELGN 135 (866)
Q Consensus 65 ~~v~~L~l~~~~l~~--~~p~~l~~l~~L~~L~Ls~n~------l~~~~p~~l~~l~-~L~~L~Ls~N~l~~~~p~~l~~ 135 (866)
.++..+.+.-..+.. .-+..|.++.+|+.|.+..+. +...+|..|..++ +|+.|++.++.+. .+|..| .
T Consensus 532 ~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~ 609 (1153)
T PLN03210 532 KKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-R 609 (1153)
T ss_pred ceeeEEEeccCccceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-C
Confidence 345555544333321 234678999999999997664 3335677777775 6999999999986 778877 5
Q ss_pred CCCCCEeeccCCCCCCCCchhhcCCCCccEEEeecCCCCCCChhhhhcCcCCCEEEecCCCCCCCCcccccCCCCCCeEE
Q 038019 136 LKELTVLAFGTNNFSGALPPELGNLAKLEQLYIDSCGAGGEIPSTFAKLRNMQTLWASDNPFTGKIPDFIGNWTKLKSLR 215 (866)
Q Consensus 136 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ 215 (866)
+.+|+.|+|.+|++. .++..+..+++|+.|+|++|.....+|. +..+++|++|+|++|.....+|..+.++++|+.|+
T Consensus 610 ~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~ 687 (1153)
T PLN03210 610 PENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLD 687 (1153)
T ss_pred ccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEe
Confidence 789999999999987 6788889999999999999876677774 88999999999999987778999999999999999
Q ss_pred ccCCCCCCCCchhhcCCCCCCEEEccCccCCCCCchhhhcCCCCCceeccCcccccCCCccc------------------
Q 038019 216 FQGNSFQGPIPSSLSKLASLESLQMSDIYNVSSSLDFVMSLKNLTDLSLRNALITGTIPFGI------------------ 277 (866)
Q Consensus 216 L~~N~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~------------------ 277 (866)
+++|...+.+|..+ ++++|+.|++++|......+. ...+|+.|+|++|.+.. +|..+
T Consensus 688 L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~---~~~nL~~L~L~~n~i~~-lP~~~~l~~L~~L~l~~~~~~~l 762 (1153)
T PLN03210 688 MSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPD---ISTNISWLDLDETAIEE-FPSNLRLENLDELILCEMKSEKL 762 (1153)
T ss_pred CCCCCCcCccCCcC-CCCCCCEEeCCCCCCcccccc---ccCCcCeeecCCCcccc-ccccccccccccccccccchhhc
Confidence 99987666778766 799999999998764322221 24578888888887653 33221
Q ss_pred ------------CCCCCcCEEeeecCcCcccCCcccCCCCCCcEEECcCCCCcccCCccc-CCCCCEEEeeCCCCCCccC
Q 038019 278 ------------GELQMLQILDLSFNNLTGQIPATLFNIDSLEYLFLGNNSLSGTLPDQK-SENLQKIDLSHNHLSGTFP 344 (866)
Q Consensus 278 ------------~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~~p~~~-~~~L~~L~Ls~N~l~g~~p 344 (866)
...++|+.|+|++|...+.+|.++.++++|+.|+|++|...+.+|... .++|+.|+|++|..-..+|
T Consensus 763 ~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p 842 (1153)
T PLN03210 763 WERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFP 842 (1153)
T ss_pred cccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCcccccc
Confidence 123578888888888877899999999999999999886655666543 5789999999987766777
Q ss_pred ccccccccccccccccccccCCCccCCCcc
Q 038019 345 LWVNSELQMNLAVNNFKFDISNISVFPGLN 374 (866)
Q Consensus 345 ~~~~~~~~l~l~~N~~~~~~~~~~~~p~l~ 374 (866)
....+...|+|++|.+..-...+..++.|.
T Consensus 843 ~~~~nL~~L~Ls~n~i~~iP~si~~l~~L~ 872 (1153)
T PLN03210 843 DISTNISDLNLSRTGIEEVPWWIEKFSNLS 872 (1153)
T ss_pred ccccccCEeECCCCCCccChHHHhcCCCCC
Confidence 654444458888888864333333444443
|
syringae 6; Provisional |
| >KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.79 E-value=4.4e-21 Score=197.89 Aligned_cols=274 Identities=20% Similarity=0.200 Sum_probs=177.7
Q ss_pred CCCEEEccCCCCCCCCCccccCCCCcCEEeccCCcCCCCCCccccCCCCCCEeeccC-CCCCCCCchhhcCCCCccEEEe
Q 038019 90 YLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKELTVLAFGT-NNFSGALPPELGNLAKLEQLYI 168 (866)
Q Consensus 90 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~-N~l~~~~p~~l~~l~~L~~L~L 168 (866)
.-..|+|..|+|+.+.|.+|+.+++|+.|||++|+|+.+-|++|.+|.+|..|-+.+ |+|+......|++|..|+.|.+
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll 147 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL 147 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence 446778888888877777888888888888888888888888888888877766555 8888766677888888888888
Q ss_pred ecCCCCCCChhhhhcCcCCCEEEecCCCCCCCCcccccCCCCCCeEEccCCCCC------------CCCchhhcCCCCCC
Q 038019 169 DSCGAGGEIPSTFAKLRNMQTLWASDNPFTGKIPDFIGNWTKLKSLRFQGNSFQ------------GPIPSSLSKLASLE 236 (866)
Q Consensus 169 ~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~------------~~~p~~~~~l~~L~ 236 (866)
.-|++.....+.|..|++|..|.+.+|.+...-...|..+..++.+.+..|.+- ...|..++......
T Consensus 148 Nan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~ 227 (498)
T KOG4237|consen 148 NANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVS 227 (498)
T ss_pred ChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecc
Confidence 888888888888888888888888888887443347777888888888877732 11222333333333
Q ss_pred EEEccCccCCCCCchhh-hcCCCCCceeccCcccccCCCc-ccCCCCCcCEEeeecCcCcccCCcccCCCCCCcEEECcC
Q 038019 237 SLQMSDIYNVSSSLDFV-MSLKNLTDLSLRNALITGTIPF-GIGELQMLQILDLSFNNLTGQIPATLFNIDSLEYLFLGN 314 (866)
Q Consensus 237 ~L~l~~n~~~~~~~~~~-~~l~~L~~L~L~~n~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~ 314 (866)
...+.+..+.......+ ..+..+..--.+.+...+..|. .|..+++|+.|+|++|+|+++-+.+|..+..++.|.|..
T Consensus 228 p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~ 307 (498)
T KOG4237|consen 228 PYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTR 307 (498)
T ss_pred hHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCc
Confidence 33333332222222211 1111221111223333333343 477777777777777777777777777777777777777
Q ss_pred CCCcccCC--cccCCCCCEEEeeCCCCCCccCcccccc---ccccccccccccc
Q 038019 315 NSLSGTLP--DQKSENLQKIDLSHNHLSGTFPLWVNSE---LQMNLAVNNFKFD 363 (866)
Q Consensus 315 N~l~g~~p--~~~~~~L~~L~Ls~N~l~g~~p~~~~~~---~~l~l~~N~~~~~ 363 (866)
|++...-. ......|+.|+|.+|+|+..-|..+... .+++|-.|.|.++
T Consensus 308 N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~Cn 361 (498)
T KOG4237|consen 308 NKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCN 361 (498)
T ss_pred chHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCc
Confidence 77752111 1123567777777777776666655432 2367777777665
|
|
| >KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.79 E-value=4.6e-21 Score=197.71 Aligned_cols=292 Identities=20% Similarity=0.168 Sum_probs=227.0
Q ss_pred CCeeccccCC----CCCeeeEEEEEEcccCcCCCCCcccCCCCCCCEEEccCCCCCCCCCccccCCCCcCEEeccC-CcC
Q 038019 51 PAIVCNCTFD----NGATCHITKLRVYGLNKKGVIPEELVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSH-NDF 125 (866)
Q Consensus 51 ~~v~C~~~~~----~~~~~~v~~L~l~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~-N~l 125 (866)
..|.|+..+- ....+..+.|+|..|.++...|..|+.+++|+.||||+|.|+.+-|++|..|.+|..|-+.+ |+|
T Consensus 49 ~~VdCr~~GL~eVP~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI 128 (498)
T KOG4237|consen 49 GIVDCRGKGLTEVPANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKI 128 (498)
T ss_pred ceEEccCCCcccCcccCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCch
Confidence 4677765332 12346789999999999998899999999999999999999999999999999998888777 999
Q ss_pred CCCCCccccCCCCCCEeeccCCCCCCCCchhhcCCCCccEEEeecCCCCCCChhhhhcCcCCCEEEecCCCCCC------
Q 038019 126 SGPVPRELGNLKELTVLAFGTNNFSGALPPELGNLAKLEQLYIDSCGAGGEIPSTFAKLRNMQTLWASDNPFTG------ 199 (866)
Q Consensus 126 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~------ 199 (866)
+..-.+.|++|..|+.|.+.-|++.-...+.|..|++|..|.+..|.+....-.+|..+.+++++.+..|.+..
T Consensus 129 ~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~w 208 (498)
T KOG4237|consen 129 TDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPW 208 (498)
T ss_pred hhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccch
Confidence 97777899999999999999999998989999999999999999999876666689999999999999987421
Q ss_pred ------CCcccccCCCCCCeEEccCCCCCCCCchhhcCC-CCCC-EEEccCccCCCCCchhhhcCCCCCceeccCccccc
Q 038019 200 ------KIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKL-ASLE-SLQMSDIYNVSSSLDFVMSLKNLTDLSLRNALITG 271 (866)
Q Consensus 200 ------~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l-~~L~-~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 271 (866)
..|.+++...-..-..+.++++...-+..|... ..+. .+....+.....+...|..+++|+.|+|++|++++
T Consensus 209 la~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~ 288 (498)
T KOG4237|consen 209 LADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITR 288 (498)
T ss_pred hhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccch
Confidence 123334444444444555555543333333221 1111 11112222233444578899999999999999998
Q ss_pred CCCcccCCCCCcCEEeeecCcCcccCCcccCCCCCCcEEECcCCCCcccCCccc--CCCCCEEEeeCCCCCCc
Q 038019 272 TIPFGIGELQMLQILDLSFNNLTGQIPATLFNIDSLEYLFLGNNSLSGTLPDQK--SENLQKIDLSHNHLSGT 342 (866)
Q Consensus 272 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~~p~~~--~~~L~~L~Ls~N~l~g~ 342 (866)
.-+.+|..+..|+.|.|..|+|...-...|.++..|++|+|.+|+|+...|..+ ...|..|+|-.|.+...
T Consensus 289 i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~Cn 361 (498)
T KOG4237|consen 289 IEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCN 361 (498)
T ss_pred hhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCc
Confidence 888899999999999999999987777788889999999999999997666544 35788999999988754
|
|
| >KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.6e-20 Score=212.47 Aligned_cols=267 Identities=26% Similarity=0.279 Sum_probs=217.1
Q ss_pred eeEEEEEEcccCcCCCCCcccCCCCCCCEEEccCCCCCCCCCccccCCCCcCEEeccCCcCCCCCCccccCCCCCCEeec
Q 038019 65 CHITKLRVYGLNKKGVIPEELVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKELTVLAF 144 (866)
Q Consensus 65 ~~v~~L~l~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 144 (866)
.+++.|..+.|-++...+. .--.+|+++|+++|+++ .+|..++.+.+|+.|+..+|+|+ .+|..+..+++|+.|.+
T Consensus 219 ~~l~~L~a~~n~l~~~~~~--p~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~ 294 (1081)
T KOG0618|consen 219 PSLTALYADHNPLTTLDVH--PVPLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSA 294 (1081)
T ss_pred cchheeeeccCcceeeccc--cccccceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHh
Confidence 3566677777776633332 12247899999999998 46788999999999999999995 78888888999999999
Q ss_pred cCCCCCCCCchhhcCCCCccEEEeecCCCCCCChhhhhcCcC-CCEEEecCCCCCCCCcccccCCCCCCeEEccCCCCCC
Q 038019 145 GTNNFSGALPPELGNLAKLEQLYIDSCGAGGEIPSTFAKLRN-MQTLWASDNPFTGKIPDFIGNWTKLKSLRFQGNSFQG 223 (866)
Q Consensus 145 s~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~-L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~ 223 (866)
..|.+. .+|+.+..++.|++|+|..|++....+..|..+.. |..|+.+.|.+....--.=...+.|+.|++.+|.++.
T Consensus 295 ~~nel~-yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd 373 (1081)
T KOG0618|consen 295 AYNELE-YIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTD 373 (1081)
T ss_pred hhhhhh-hCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccc
Confidence 999987 67788888999999999999987655544544443 7788888888774321112245678999999999998
Q ss_pred CCchhhcCCCCCCEEEccCccCCCCCchhhhcCCCCCceeccCcccccCCCcccCCCCCcCEEeeecCcCcccCCcccCC
Q 038019 224 PIPSSLSKLASLESLQMSDIYNVSSSLDFVMSLKNLTDLSLRNALITGTIPFGIGELQMLQILDLSFNNLTGQIPATLFN 303 (866)
Q Consensus 224 ~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~ 303 (866)
..-..+.+..+|+.|+|++|++...+...+.++..|+.|+|++|+++ .+|..+..+..|+.|...+|++. ..| .+..
T Consensus 374 ~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~ 450 (1081)
T KOG0618|consen 374 SCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQ 450 (1081)
T ss_pred cchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhh
Confidence 88888999999999999999999888889999999999999999998 67788999999999999999997 566 7899
Q ss_pred CCCCcEEECcCCCCcc-cCCcccC-CCCCEEEeeCCCC
Q 038019 304 IDSLEYLFLGNNSLSG-TLPDQKS-ENLQKIDLSHNHL 339 (866)
Q Consensus 304 l~~L~~L~L~~N~l~g-~~p~~~~-~~L~~L~Ls~N~l 339 (866)
+++|+.+|++.|+|+. .+|.... ++|++|||++|.-
T Consensus 451 l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 451 LPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTR 488 (1081)
T ss_pred cCcceEEecccchhhhhhhhhhCCCcccceeeccCCcc
Confidence 9999999999999984 4555444 8999999999973
|
|
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=4.5e-18 Score=199.33 Aligned_cols=242 Identities=24% Similarity=0.274 Sum_probs=189.5
Q ss_pred eeEEEEEEcccCcCCCCCcccCCCCCCCEEEccCCCCCCCCCccccCCCCcCEEeccCCcCCCCCCccccCCCCCCEeec
Q 038019 65 CHITKLRVYGLNKKGVIPEELVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKELTVLAF 144 (866)
Q Consensus 65 ~~v~~L~l~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 144 (866)
.+++.|.+.+|+++. +|. .+++|++|+|++|+|+. +|.. .++|+.|+|++|.|+ .+|..+ .+|+.|+|
T Consensus 222 ~~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~Lts-LP~l---p~sL~~L~Ls~N~L~-~Lp~lp---~~L~~L~L 289 (788)
T PRK15387 222 AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLTS-LPVL---PPGLLELSIFSNPLT-HLPALP---SGLCKLWI 289 (788)
T ss_pred cCCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccCc-ccCc---ccccceeeccCCchh-hhhhch---hhcCEEEC
Confidence 478999999999985 554 25789999999999984 5643 468999999999998 455433 57889999
Q ss_pred cCCCCCCCCchhhcCCCCccEEEeecCCCCCCChhhhhcCcCCCEEEecCCCCCCCCcccccCCCCCCeEEccCCCCCCC
Q 038019 145 GTNNFSGALPPELGNLAKLEQLYIDSCGAGGEIPSTFAKLRNMQTLWASDNPFTGKIPDFIGNWTKLKSLRFQGNSFQGP 224 (866)
Q Consensus 145 s~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ 224 (866)
++|+++. +|. .+++|+.|+|++|++++. |.. ..+|+.|++++|++++ +|.. ..+|+.|+|++|+|++
T Consensus 290 s~N~Lt~-LP~---~p~~L~~LdLS~N~L~~L-p~l---p~~L~~L~Ls~N~L~~-LP~l---p~~Lq~LdLS~N~Ls~- 356 (788)
T PRK15387 290 FGNQLTS-LPV---LPPGLQELSVSDNQLASL-PAL---PSELCKLWAYNNQLTS-LPTL---PSGLQELSVSDNQLAS- 356 (788)
T ss_pred cCCcccc-ccc---cccccceeECCCCccccC-CCC---cccccccccccCcccc-cccc---ccccceEecCCCccCC-
Confidence 9999984 454 357899999999999863 432 2468889999999984 5542 2579999999999995
Q ss_pred CchhhcCCCCCCEEEccCccCCCCCchhhhcCCCCCceeccCcccccCCCcccCCCCCcCEEeeecCcCcccCCcccCCC
Q 038019 225 IPSSLSKLASLESLQMSDIYNVSSSLDFVMSLKNLTDLSLRNALITGTIPFGIGELQMLQILDLSFNNLTGQIPATLFNI 304 (866)
Q Consensus 225 ~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l 304 (866)
+|.. ..+|+.|++++|.+...+. ...+|+.|+|++|.+++ +|.. .++|+.|++++|+|+. +|.. .
T Consensus 357 LP~l---p~~L~~L~Ls~N~L~~LP~----l~~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Lss-IP~l---~ 421 (788)
T PRK15387 357 LPTL---PSELYKLWAYNNRLTSLPA----LPSGLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLTS-LPML---P 421 (788)
T ss_pred CCCC---CcccceehhhccccccCcc----cccccceEEecCCcccC-CCCc---ccCCCEEEccCCcCCC-CCcc---h
Confidence 5543 3578889999988774331 23579999999999985 5543 3679999999999985 6653 3
Q ss_pred CCCcEEECcCCCCcccCCccc--CCCCCEEEeeCCCCCCccCccc
Q 038019 305 DSLEYLFLGNNSLSGTLPDQK--SENLQKIDLSHNHLSGTFPLWV 347 (866)
Q Consensus 305 ~~L~~L~L~~N~l~g~~p~~~--~~~L~~L~Ls~N~l~g~~p~~~ 347 (866)
.+|+.|+|++|+++ .+|... +++|+.|+|++|+|++..|..+
T Consensus 422 ~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 422 SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred hhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence 47889999999998 567654 4789999999999999888755
|
|
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=3e-18 Score=202.26 Aligned_cols=245 Identities=23% Similarity=0.347 Sum_probs=194.4
Q ss_pred eEEEEEEcccCcCCCCCcccCCCCCCCEEEccCCCCCCCCCccccCCCCcCEEeccCCcCCCCCCccccCCCCCCEeecc
Q 038019 66 HITKLRVYGLNKKGVIPEELVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKELTVLAFG 145 (866)
Q Consensus 66 ~v~~L~l~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls 145 (866)
+.+.|++.+++++. +|..+. ++|+.|+|++|+|+ .+|..+. ++|++|+|++|+|+ .+|..+. .+|+.|+|+
T Consensus 179 ~~~~L~L~~~~Lts-LP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls 249 (754)
T PRK15370 179 NKTELRLKILGLTT-IPACIP--EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELS 249 (754)
T ss_pred CceEEEeCCCCcCc-CCcccc--cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECc
Confidence 56889999998884 676664 58999999999998 5676554 58999999999998 5676664 479999999
Q ss_pred CCCCCCCCchhhcCCCCccEEEeecCCCCCCChhhhhcCcCCCEEEecCCCCCCCCcccccCCCCCCeEEccCCCCCCCC
Q 038019 146 TNNFSGALPPELGNLAKLEQLYIDSCGAGGEIPSTFAKLRNMQTLWASDNPFTGKIPDFIGNWTKLKSLRFQGNSFQGPI 225 (866)
Q Consensus 146 ~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~ 225 (866)
+|++. .+|..+. .+|+.|+|++|+++. +|..+. ++|+.|+|++|++++ +|..+. ++|+.|++++|.++. +
T Consensus 250 ~N~L~-~LP~~l~--s~L~~L~Ls~N~L~~-LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt~-L 319 (754)
T PRK15370 250 INRIT-ELPERLP--SALQSLDLFHNKISC-LPENLP--EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLTA-L 319 (754)
T ss_pred CCccC-cCChhHh--CCCCEEECcCCccCc-cccccC--CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCcccc-C
Confidence 99998 6777765 589999999999984 676554 589999999999984 565543 479999999999985 5
Q ss_pred chhhcCCCCCCEEEccCccCCCCCchhhhcCCCCCceeccCcccccCCCcccCCCCCcCEEeeecCcCcccCCcccCCCC
Q 038019 226 PSSLSKLASLESLQMSDIYNVSSSLDFVMSLKNLTDLSLRNALITGTIPFGIGELQMLQILDLSFNNLTGQIPATLFNID 305 (866)
Q Consensus 226 p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~ 305 (866)
|..+. ++|+.|++++|.+..... .+ .++|+.|+|++|.++ .+|..+. ++|+.|+|++|+|+ .+|..+. .
T Consensus 320 P~~l~--~sL~~L~Ls~N~Lt~LP~-~l--~~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt-~LP~~l~--~ 388 (754)
T PRK15370 320 PETLP--PGLKTLEAGENALTSLPA-SL--PPELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALT-NLPENLP--A 388 (754)
T ss_pred Ccccc--ccceeccccCCccccCCh-hh--cCcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCC-CCCHhHH--H
Confidence 54443 689999999998765432 22 368999999999998 4665553 68999999999998 4566554 4
Q ss_pred CCcEEECcCCCCcccCCccc------CCCCCEEEeeCCCCCC
Q 038019 306 SLEYLFLGNNSLSGTLPDQK------SENLQKIDLSHNHLSG 341 (866)
Q Consensus 306 ~L~~L~L~~N~l~g~~p~~~------~~~L~~L~Ls~N~l~g 341 (866)
+|+.|++++|+++ .+|... .+.+..|+|.+|+++.
T Consensus 389 sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls~ 429 (754)
T PRK15370 389 ALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFSE 429 (754)
T ss_pred HHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCccH
Confidence 7999999999998 445422 3678999999999973
|
|
| >KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.75 E-value=5e-20 Score=208.44 Aligned_cols=282 Identities=26% Similarity=0.297 Sum_probs=201.0
Q ss_pred EEEEEEcccCcCCCCCcccCCCCCCCEEEccCCCCCCCCCccccCCC--------------------CcCEEeccCCcCC
Q 038019 67 ITKLRVYGLNKKGVIPEELVTLQYLTVLKIDQNFFTGPLPSFIGNLS--------------------RLMFLSFSHNDFS 126 (866)
Q Consensus 67 v~~L~l~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~--------------------~L~~L~Ls~N~l~ 126 (866)
++.+++..|.+.+.++.++.++++ .|||++|.+.. ..+.++. +|+.|+.++|.++
T Consensus 158 ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~~---~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~ 232 (1081)
T KOG0618|consen 158 IKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEMEV---LDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLT 232 (1081)
T ss_pred chhhhhhhhhcccchhcchhhhhe--eeecccchhhh---hhhhhccchhhhhhhhcccceEEecCcchheeeeccCcce
Confidence 677778888888888877877777 78888887761 1233333 4444555555544
Q ss_pred CCCCccccCCCCCCEeeccCCCCCCCCchhhcCCCCccEEEeecCCCCCCChhhhhcCcCCCEEEecCCCCCCCCccccc
Q 038019 127 GPVPRELGNLKELTVLAFGTNNFSGALPPELGNLAKLEQLYIDSCGAGGEIPSTFAKLRNMQTLWASDNPFTGKIPDFIG 206 (866)
Q Consensus 127 ~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~ 206 (866)
...+ -.--.+|++++++.|+++ .+|..++.+.+|+.|.+..|++ ..+|..+..+++|+.|.+..|.+. -+|....
T Consensus 233 ~~~~--~p~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l-~~lp~ri~~~~~L~~l~~~~nel~-yip~~le 307 (1081)
T KOG0618|consen 233 TLDV--HPVPLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRL-VALPLRISRITSLVSLSAAYNELE-YIPPFLE 307 (1081)
T ss_pred eecc--ccccccceeeecchhhhh-cchHHHHhcccceEecccchhH-HhhHHHHhhhhhHHHHHhhhhhhh-hCCCccc
Confidence 2111 112247888888888888 4568888888888888888888 567777888888888888888887 6677777
Q ss_pred CCCCCCeEEccCCCCCCCCchhhcC-------------------------CCCCCEEEccCccCCCCCchhhhcCCCCCc
Q 038019 207 NWTKLKSLRFQGNSFQGPIPSSLSK-------------------------LASLESLQMSDIYNVSSSLDFVMSLKNLTD 261 (866)
Q Consensus 207 ~l~~L~~L~L~~N~l~~~~p~~~~~-------------------------l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~ 261 (866)
.++.|++|+|..|++....+..|.- ++.|+.|++.+|.+.....+.+.++.+|+.
T Consensus 308 ~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKV 387 (1081)
T KOG0618|consen 308 GLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKV 387 (1081)
T ss_pred ccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceee
Confidence 7888888888888876332221111 234555666667777666777778888888
Q ss_pred eeccCcccccCCCcccCCCCCcCEEeeecCcCcccCCcccCCCCCCcEEECcCCCCcccCCc-ccCCCCCEEEeeCCCCC
Q 038019 262 LSLRNALITGTIPFGIGELQMLQILDLSFNNLTGQIPATLFNIDSLEYLFLGNNSLSGTLPD-QKSENLQKIDLSHNHLS 340 (866)
Q Consensus 262 L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~~p~-~~~~~L~~L~Ls~N~l~ 340 (866)
|+|++|++.......+.++..|+.|+||+|+++ .+|.++..++.|++|....|++. .+|. ...+.|+.+|||.|+++
T Consensus 388 LhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fPe~~~l~qL~~lDlS~N~L~ 465 (1081)
T KOG0618|consen 388 LHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFPELAQLPQLKVLDLSCNNLS 465 (1081)
T ss_pred eeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-echhhhhcCcceEEecccchhh
Confidence 888888887554556778888888888888887 67788888888888888888887 3443 34589999999999998
Q ss_pred Cc-cCcccc-cccc-cccccccc
Q 038019 341 GT-FPLWVN-SELQ-MNLAVNNF 360 (866)
Q Consensus 341 g~-~p~~~~-~~~~-l~l~~N~~ 360 (866)
.. +|.... ..++ |+|++|..
T Consensus 466 ~~~l~~~~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 466 EVTLPEALPSPNLKYLDLSGNTR 488 (1081)
T ss_pred hhhhhhhCCCcccceeeccCCcc
Confidence 54 455444 4454 99999983
|
|
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.1e-19 Score=196.72 Aligned_cols=270 Identities=22% Similarity=0.245 Sum_probs=170.4
Q ss_pred EEEEcccCcC-CCCCcccCCCCCCCEEEccCCCCCCC----CCccccCCCCcCEEeccCCcCCC------CCCccccCCC
Q 038019 69 KLRVYGLNKK-GVIPEELVTLQYLTVLKIDQNFFTGP----LPSFIGNLSRLMFLSFSHNDFSG------PVPRELGNLK 137 (866)
Q Consensus 69 ~L~l~~~~l~-~~~p~~l~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~------~~p~~l~~l~ 137 (866)
+|+|..++++ ......+..+..|+.|+|+++.++.. ++..+...++|++|+++++.+.+ .++..+..++
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~ 81 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC 81 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence 4566666666 33455566777788888888887542 45556677778888888887762 2334566777
Q ss_pred CCCEeeccCCCCCCCCchhhcCCCC---ccEEEeecCCCCC----CChhhhhcC-cCCCEEEecCCCCCCC----Ccccc
Q 038019 138 ELTVLAFGTNNFSGALPPELGNLAK---LEQLYIDSCGAGG----EIPSTFAKL-RNMQTLWASDNPFTGK----IPDFI 205 (866)
Q Consensus 138 ~L~~L~Ls~N~l~~~~p~~l~~l~~---L~~L~L~~n~l~~----~~p~~~~~l-~~L~~L~L~~N~l~~~----~p~~l 205 (866)
+|+.|+|++|.+.+..+..+..+.+ |++|++++|+++. .+...+..+ ++|+.|++++|.+++. ++..+
T Consensus 82 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~ 161 (319)
T cd00116 82 GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKAL 161 (319)
T ss_pred ceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHH
Confidence 8888888888887666666665555 8888888887763 233455566 7788888888887742 33445
Q ss_pred cCCCCCCeEEccCCCCCCC----CchhhcCCCCCCEEEccCccCCCCCc----hhhhcCCCCCceeccCcccccCCCccc
Q 038019 206 GNWTKLKSLRFQGNSFQGP----IPSSLSKLASLESLQMSDIYNVSSSL----DFVMSLKNLTDLSLRNALITGTIPFGI 277 (866)
Q Consensus 206 ~~l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~l~~n~~~~~~~----~~~~~l~~L~~L~L~~n~l~~~~p~~~ 277 (866)
..+++|++|+|++|.+++. ++..+..+++|+.|++++|.+..... ..+..+++|++|++++|.+++.....+
T Consensus 162 ~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l 241 (319)
T cd00116 162 RANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAAL 241 (319)
T ss_pred HhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHH
Confidence 5667788888888877742 23344555677777777776653322 234456677777777777664222111
Q ss_pred C-----CCCCcCEEeeecCcCcc----cCCcccCCCCCCcEEECcCCCCccc----CCcc---cCCCCCEEEeeCCC
Q 038019 278 G-----ELQMLQILDLSFNNLTG----QIPATLFNIDSLEYLFLGNNSLSGT----LPDQ---KSENLQKIDLSHNH 338 (866)
Q Consensus 278 ~-----~l~~L~~L~Ls~N~l~~----~~p~~l~~l~~L~~L~L~~N~l~g~----~p~~---~~~~L~~L~Ls~N~ 338 (866)
. ..+.|+.|++++|.++. .+...+..+++|++|++++|.++.. +... ..+.|+.|++.+|.
T Consensus 242 ~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 242 ASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDS 318 (319)
T ss_pred HHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCC
Confidence 1 23567777777777652 2334445556777777777777632 1111 11456666666664
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). |
| >KOG0192 consensus Tyrosine kinase specific for activated (GTP-bound) p21cdc42Hs [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.72 E-value=9.1e-18 Score=182.64 Aligned_cols=139 Identities=20% Similarity=0.261 Sum_probs=101.0
Q ss_pred hhccCCCCCcccCHHHH-HHHhcCCccccccCCCCceeEEEeecCCCCccCceeee--cCCCCchhHHHHHHHHHHHHHh
Q 038019 635 VLVGIGSKPNIFGYAEL-RSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAM--RGHLTEKADVFSFGVVALEIIS 711 (866)
Q Consensus 635 ~~~~~~~~~~~~~~~~~-~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~--~~~~t~ksDVySfGvvLlEl~t 711 (866)
++|......|++.+.+. ..|+.|||+++...... ..-+...||++|||||.+. ...+++|+||||||||||||+|
T Consensus 164 iIHrDLK~~NiLv~~~~~~~KI~DFGlsr~~~~~~--~~~~~~~GT~~wMAPEv~~~~~~~~~~K~DvySFgIvlWEl~t 241 (362)
T KOG0192|consen 164 IIHRDLKSDNILVDLKGKTLKIADFGLSREKVISK--TSMTSVAGTYRWMAPEVLRGEKSPYTEKSDVYSFGIVLWELLT 241 (362)
T ss_pred eeecccChhhEEEcCCCCEEEECCCccceeecccc--ccccCCCCCccccChhhhcCCCCcCCccchhhhHHHHHHHHHH
Confidence 45555555688888885 89999999998877532 1112267999999999999 6799999999999999999999
Q ss_pred cCCCCCCCchhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhcCcC
Q 038019 712 GRASSDKSLDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLAGDIE 789 (866)
Q Consensus 712 g~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~~~~~ 789 (866)
|+.||...... .....+.. . -..|.+.. .+...+..++.+||+.||++||++.+++.+|+....
T Consensus 242 ~~~Pf~~~~~~---~~~~~v~~---~-----~~Rp~~p~---~~~~~l~~l~~~CW~~dp~~RP~f~ei~~~l~~~~~ 305 (362)
T KOG0192|consen 242 GEIPFEDLAPV---QVASAVVV---G-----GLRPPIPK---ECPPHLSSLMERCWLVDPSRRPSFLEIVSRLESIMS 305 (362)
T ss_pred CCCCCCCCCHH---HHHHHHHh---c-----CCCCCCCc---cCCHHHHHHHHHhCCCCCCcCCCHHHHHHHHHHHHH
Confidence 99999865542 22222221 1 12233222 234455556668999999999999999999996543
|
|
| >KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.1e-19 Score=166.87 Aligned_cols=162 Identities=31% Similarity=0.524 Sum_probs=136.7
Q ss_pred eeEEEEEEcccCcCCCCCcccCCCCCCCEEEccCCCCCCCCCccccCCCCcCEEeccCCcCCCCCCccccCCCCCCEeec
Q 038019 65 CHITKLRVYGLNKKGVIPEELVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKELTVLAF 144 (866)
Q Consensus 65 ~~v~~L~l~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 144 (866)
.+++.|.|++|.++ .+|+.+.+|.+|++|++++|++. .+|.+++.+++|+.|++.-|++. .+|..|+.++.|+.|||
T Consensus 33 s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldl 109 (264)
T KOG0617|consen 33 SNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDL 109 (264)
T ss_pred hhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhc
Confidence 57888889998887 46667889999999999999987 68888999999999999999887 78899999999999999
Q ss_pred cCCCCCC-CCchhhcCCCCccEEEeecCCCCCCChhhhhcCcCCCEEEecCCCCCCCCcccccCCCCCCeEEccCCCCCC
Q 038019 145 GTNNFSG-ALPPELGNLAKLEQLYIDSCGAGGEIPSTFAKLRNMQTLWASDNPFTGKIPDFIGNWTKLKSLRFQGNSFQG 223 (866)
Q Consensus 145 s~N~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~ 223 (866)
++|++.. .+|..|..++.|+.|+|+.|.+. .+|..++++++|+.|.+.+|.+. .+|..++.++.|++|.+.+|+++
T Consensus 110 tynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~- 186 (264)
T KOG0617|consen 110 TYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT- 186 (264)
T ss_pred cccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-
Confidence 9988854 57888888889999999888875 56777889999999999988887 67888888889999999999888
Q ss_pred CCchhhcCC
Q 038019 224 PIPSSLSKL 232 (866)
Q Consensus 224 ~~p~~~~~l 232 (866)
.+|..++++
T Consensus 187 vlppel~~l 195 (264)
T KOG0617|consen 187 VLPPELANL 195 (264)
T ss_pred ecChhhhhh
Confidence 566666554
|
|
| >KOG0197 consensus Tyrosine kinases [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.8e-18 Score=187.32 Aligned_cols=132 Identities=24% Similarity=0.308 Sum_probs=101.3
Q ss_pred CCCCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHh-cCCCCCC
Q 038019 640 GSKPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIIS-GRASSDK 718 (866)
Q Consensus 640 ~~~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~t-g~~p~~~ 718 (866)
-...|++..++..+|+.|||+++.++++.| ++..+..-.+.|.|||.+..++++.|||||||||+||||+| |+.|+..
T Consensus 329 LAARNiLV~~~~~vKIsDFGLAr~~~d~~Y-~~~~~~kfPIkWtAPEa~~~~~FS~kSDVWSFGVlL~E~fT~G~~py~~ 407 (468)
T KOG0197|consen 329 LAARNILVDEDLVVKISDFGLARLIGDDEY-TASEGGKFPIKWTAPEALNYGKFSSKSDVWSFGVLLWELFTYGRVPYPG 407 (468)
T ss_pred hhhhheeeccCceEEEcccccccccCCCce-eecCCCCCCceecCHHHHhhCCcccccceeehhhhHHHHhccCCCCCCC
Confidence 334589999999999999999998887654 33333344579999999999999999999999999999999 9999876
Q ss_pred CchhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhcC
Q 038019 719 SLDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLAGD 787 (866)
Q Consensus 719 ~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~~~ 787 (866)
+...+. + +.+++|-- + ..+..+...+.+|+..||+.+|++|||+......|+..
T Consensus 408 msn~ev---~----~~le~GyR-------l-p~P~~CP~~vY~lM~~CW~~~P~~RPtF~~L~~~l~~~ 461 (468)
T KOG0197|consen 408 MSNEEV---L----ELLERGYR-------L-PRPEGCPDEVYELMKSCWHEDPEDRPTFETLREVLEDF 461 (468)
T ss_pred CCHHHH---H----HHHhccCc-------C-CCCCCCCHHHHHHHHHHhhCCcccCCCHHHHHHHHHHh
Confidence 554432 2 22333311 1 12334556777888899999999999999888888743
|
|
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.1e-18 Score=187.47 Aligned_cols=252 Identities=21% Similarity=0.228 Sum_probs=196.4
Q ss_pred eEEEEEEcccCcCCC----CCcccCCCCCCCEEEccCCCCCC------CCCccccCCCCcCEEeccCCcCCCCCCccccC
Q 038019 66 HITKLRVYGLNKKGV----IPEELVTLQYLTVLKIDQNFFTG------PLPSFIGNLSRLMFLSFSHNDFSGPVPRELGN 135 (866)
Q Consensus 66 ~v~~L~l~~~~l~~~----~p~~l~~l~~L~~L~Ls~n~l~~------~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~ 135 (866)
+++.|++.++.++.. ++..+...++|+.|+++++.+.+ .++..+.++++|++|+|++|.+.+..+..+..
T Consensus 24 ~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 103 (319)
T cd00116 24 CLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLES 103 (319)
T ss_pred hccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHH
Confidence 489999999988643 66678888899999999998862 23456778999999999999998767766666
Q ss_pred CCC---CCEeeccCCCCCC----CCchhhcCC-CCccEEEeecCCCCCC----ChhhhhcCcCCCEEEecCCCCCCC---
Q 038019 136 LKE---LTVLAFGTNNFSG----ALPPELGNL-AKLEQLYIDSCGAGGE----IPSTFAKLRNMQTLWASDNPFTGK--- 200 (866)
Q Consensus 136 l~~---L~~L~Ls~N~l~~----~~p~~l~~l-~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~--- 200 (866)
+.+ |++|++++|++++ .+...+..+ ++|+.|+|++|.+++. ++..+..+++|++|++++|.+++.
T Consensus 104 l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 183 (319)
T cd00116 104 LLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIR 183 (319)
T ss_pred HhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHH
Confidence 655 9999999999974 334456677 9999999999999853 445677888999999999999853
Q ss_pred -CcccccCCCCCCeEEccCCCCCCC----CchhhcCCCCCCEEEccCccCCCCCchhhh-----cCCCCCceeccCcccc
Q 038019 201 -IPDFIGNWTKLKSLRFQGNSFQGP----IPSSLSKLASLESLQMSDIYNVSSSLDFVM-----SLKNLTDLSLRNALIT 270 (866)
Q Consensus 201 -~p~~l~~l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~-----~l~~L~~L~L~~n~l~ 270 (866)
++..+..+++|+.|+|++|.+.+. +...+..+++|+.|++++|.+.......+. ..+.|+.|++++|.++
T Consensus 184 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~ 263 (319)
T cd00116 184 ALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDIT 263 (319)
T ss_pred HHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCC
Confidence 334456667999999999998744 345567789999999999887653333222 2479999999999987
Q ss_pred c----CCCcccCCCCCcCEEeeecCcCccc----CCcccCCC-CCCcEEECcCCCC
Q 038019 271 G----TIPFGIGELQMLQILDLSFNNLTGQ----IPATLFNI-DSLEYLFLGNNSL 317 (866)
Q Consensus 271 ~----~~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~l~~l-~~L~~L~L~~N~l 317 (866)
+ .+...+..+++|+.|++++|.+... ....+... +.|+.|++.+|.+
T Consensus 264 ~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 264 DDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred cHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 3 2334566778999999999999854 44444445 7899999998864
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). |
| >KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.3e-18 Score=159.89 Aligned_cols=156 Identities=26% Similarity=0.478 Sum_probs=136.8
Q ss_pred cCCCCCCCEEEccCCCCCCCCCccccCCCCcCEEeccCCcCCCCCCccccCCCCCCEeeccCCCCCCCCchhhcCCCCcc
Q 038019 85 LVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKELTVLAFGTNNFSGALPPELGNLAKLE 164 (866)
Q Consensus 85 l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~ 164 (866)
+.++++++.|.||+|+++ .+|..+..|.+|+.|++++|+|. .+|.+++.|++|+.|+++-|.+. .+|..|+.++.|+
T Consensus 29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~le 105 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALE 105 (264)
T ss_pred ccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhh
Confidence 557788899999999998 67777999999999999999998 78999999999999999999997 8899999999999
Q ss_pred EEEeecCCCCC-CChhhhhcCcCCCEEEecCCCCCCCCcccccCCCCCCeEEccCCCCCCCCchhhcCCCCCCEEEccCc
Q 038019 165 QLYIDSCGAGG-EIPSTFAKLRNMQTLWASDNPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLESLQMSDI 243 (866)
Q Consensus 165 ~L~L~~n~l~~-~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~n 243 (866)
.|+|..|++.. .+|..|..|+.|+.|+|++|.+. .+|..++++++|+.|.+..|.+- .+|..++.++.|++|++.+|
T Consensus 106 vldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgn 183 (264)
T KOG0617|consen 106 VLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGN 183 (264)
T ss_pred hhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccc
Confidence 99999999876 58999999999999999999997 78888999999999999999887 57887777777766666555
Q ss_pred cC
Q 038019 244 YN 245 (866)
Q Consensus 244 ~~ 245 (866)
.+
T Consensus 184 rl 185 (264)
T KOG0617|consen 184 RL 185 (264)
T ss_pred ee
Confidence 44
|
|
| >KOG1026 consensus Nerve growth factor receptor TRKA and related tyrosine kinases [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.5e-17 Score=188.95 Aligned_cols=130 Identities=25% Similarity=0.351 Sum_probs=104.9
Q ss_pred CcccCHHHHHHHhcCCccccccCCCCceeEEEee---cCCCCccCceeeecCCCCchhHHHHHHHHHHHHHh-cCCCCCC
Q 038019 643 PNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVT---ANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIIS-GRASSDK 718 (866)
Q Consensus 643 ~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~---~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~t-g~~p~~~ 718 (866)
.|.+..+.+..|+.|||+++.+=.-.| ||.. .-.++||+||.++.+++|++||||||||||||++| |+.|+..
T Consensus 632 RNCLVge~l~VKIsDfGLsRdiYssDY---Yk~~~~t~lPIRWMppEsIly~kFTteSDVWs~GVvLWEIFsyG~QPy~g 708 (774)
T KOG1026|consen 632 RNCLVGENLVVKISDFGLSRDIYSSDY---YKVRGNTLLPIRWMPPESILYGKFTTESDVWSFGVVLWEIFSYGKQPYYG 708 (774)
T ss_pred hhceeccceEEEecccccchhhhhhhh---hcccCCceeeeecCCHHHhhcCcccchhhhhhhhhhhhhhhccccCcccc
Confidence 477888899999999999998754444 4443 23479999999999999999999999999999999 9999987
Q ss_pred CchhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhcCcCC
Q 038019 719 SLDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLAGDIEV 790 (866)
Q Consensus 719 ~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~~~~~~ 790 (866)
....+ |.+.+++|++. +.++.+..++..|++.||+..|++||+++||-..|+.....
T Consensus 709 lSn~E-------VIe~i~~g~lL--------~~Pe~CP~~vY~LM~~CW~~~P~~RPsF~eI~~~L~~~~~~ 765 (774)
T KOG1026|consen 709 LSNQE-------VIECIRAGQLL--------SCPENCPTEVYSLMLECWNENPKRRPSFKEIHSRLQAWAQA 765 (774)
T ss_pred cchHH-------HHHHHHcCCcc--------cCCCCCCHHHHHHHHHHhhcCcccCCCHHHHHHHHHHHHhc
Confidence 66544 33444555443 34566778899999999999999999999999999865543
|
|
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=4e-15 Score=175.44 Aligned_cols=157 Identities=25% Similarity=0.456 Sum_probs=119.5
Q ss_pred CCHHHHHHHHHHHHhCCCCCCCCCcCCCCCCCCCCCCCcccCCCCCCCCCCeeccccCCCCCeeeEEEEEEcccCcCCCC
Q 038019 2 HDKHAVRALNSILQQWDAPAVPLWNISGNPCSGSALNATDSEFESPNNNPAIVCNCTFDNGATCHITKLRVYGLNKKGVI 81 (866)
Q Consensus 2 ~~~~~~~~l~~~~~~~~~~~~~~w~~~~~~C~~~~~~~~~~~~~~~~~~~~v~C~~~~~~~~~~~v~~L~l~~~~l~~~~ 81 (866)
|.++|++||+.+|+++..+...+|+ +|+|... ...|.||.|..... .....++.|+|.+|+++|.+
T Consensus 369 t~~~~~~aL~~~k~~~~~~~~~~W~--g~~C~p~-----------~~~w~Gv~C~~~~~-~~~~~v~~L~L~~n~L~g~i 434 (623)
T PLN03150 369 TLLEEVSALQTLKSSLGLPLRFGWN--GDPCVPQ-----------QHPWSGADCQFDST-KGKWFIDGLGLDNQGLRGFI 434 (623)
T ss_pred cCchHHHHHHHHHHhcCCcccCCCC--CCCCCCc-----------ccccccceeeccCC-CCceEEEEEECCCCCccccC
Confidence 5788999999999999766444675 5788411 01358999953211 11236888888888888888
Q ss_pred CcccCCCCCCCEEEccCCCCCCCCCccccCCCCcCEEeccCCcCCCCCCccccCCCCCCEeeccCCCCCCCCchhhcCC-
Q 038019 82 PEELVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKELTVLAFGTNNFSGALPPELGNL- 160 (866)
Q Consensus 82 p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l- 160 (866)
|..|.+|++|+.|+|++|.+.|.+|..++++++|+.|+|++|+++|.+|..+++|++|++|+|++|++++.+|..++.+
T Consensus 435 p~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~ 514 (623)
T PLN03150 435 PNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRL 514 (623)
T ss_pred CHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhcc
Confidence 8888888888888888888888888888888888888888888888888888888888888888888888888777653
Q ss_pred CCccEEEeecCC
Q 038019 161 AKLEQLYIDSCG 172 (866)
Q Consensus 161 ~~L~~L~L~~n~ 172 (866)
.++..+++.+|.
T Consensus 515 ~~~~~l~~~~N~ 526 (623)
T PLN03150 515 LHRASFNFTDNA 526 (623)
T ss_pred ccCceEEecCCc
Confidence 344555555554
|
|
| >KOG0196 consensus Tyrosine kinase, EPH (ephrin) receptor family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.61 E-value=4.4e-17 Score=181.28 Aligned_cols=135 Identities=23% Similarity=0.278 Sum_probs=108.3
Q ss_pred CcccCHHHHHHHhcCCccccccCCCCceeEEEeecC--CCCccCceeeecCCCCchhHHHHHHHHHHHHHh-cCCCCCCC
Q 038019 643 PNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTAN--SYGYLAPEYAMRGHLTEKADVFSFGVVALEIIS-GRASSDKS 719 (866)
Q Consensus 643 ~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~g--t~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~t-g~~p~~~~ 719 (866)
.||+...++..|+.|||++++|.++. -..|....| .++|.|||.+..+++|..|||||||||+||+++ |.+|+..+
T Consensus 760 RNILVNsnLvCKVsDFGLSRvledd~-~~~ytt~GGKIPiRWTAPEAIa~RKFTsASDVWSyGIVmWEVmSyGERPYWdm 838 (996)
T KOG0196|consen 760 RNILVNSNLVCKVSDFGLSRVLEDDP-EAAYTTLGGKIPIRWTAPEAIAYRKFTSASDVWSYGIVMWEVMSYGERPYWDM 838 (996)
T ss_pred hheeeccceEEEeccccceeecccCC-CccccccCCccceeecChhHhhhcccCchhhccccceEEEEecccCCCccccc
Confidence 47899999999999999999997665 344554434 479999999999999999999999999999876 99999876
Q ss_pred chhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhcCcCCCCc
Q 038019 720 LDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLAGDIEVGTV 793 (866)
Q Consensus 720 ~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~~~~~~~~~ 793 (866)
...+.+.-+ ++| =+| ..++++...+.+|++.|||+|..+||.+.|+|.+|++.+..+..
T Consensus 839 SNQdVIkaI-------e~g-------yRL-PpPmDCP~aL~qLMldCWqkdR~~RP~F~qiV~~lDklIrnP~S 897 (996)
T KOG0196|consen 839 SNQDVIKAI-------EQG-------YRL-PPPMDCPAALYQLMLDCWQKDRNRRPKFAQIVSTLDKLIRNPNS 897 (996)
T ss_pred chHHHHHHH-------Hhc-------cCC-CCCCCCcHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHhcCchh
Confidence 654432222 211 111 23567788899999999999999999999999999998887654
|
|
| >KOG0581 consensus Mitogen-activated protein kinase kinase (MAP2K) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.60 E-value=4e-16 Score=161.74 Aligned_cols=132 Identities=20% Similarity=0.237 Sum_probs=96.6
Q ss_pred hhccCCCCCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCC
Q 038019 635 VLVGIGSKPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRA 714 (866)
Q Consensus 635 ~~~~~~~~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~ 714 (866)
++|++.+..|++.-...+.|+.|||.+..+-.. .....+||..|||||.+++..|+.++||||||++++|+.+||.
T Consensus 200 IIHRDIKPsNlLvNskGeVKicDFGVS~~lvnS----~a~tfvGT~~YMsPERi~g~~Ys~~sDIWSLGLsllE~a~Grf 275 (364)
T KOG0581|consen 200 IIHRDIKPSNLLVNSKGEVKICDFGVSGILVNS----IANTFVGTSAYMSPERISGESYSVKSDIWSLGLSLLELAIGRF 275 (364)
T ss_pred eeeccCCHHHeeeccCCCEEeccccccHHhhhh----hcccccccccccChhhhcCCcCCcccceecccHHHHHHhhCCC
Confidence 555555666888888999999999999888653 3455689999999999999999999999999999999999999
Q ss_pred CCCCCch--hhhhcHHHHHHHHhhcCCcccccCCccccc-CHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 715 SSDKSLD--MEKIYLLEWAWNLHENNQSFGLVDPTLTEF-NDKEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 715 p~~~~~~--~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~-~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
|+.+..+ .....+..++.. ---|++++. ..+++..++ -.|+++||.+||+.+|+++
T Consensus 276 P~~~~~~~~~~~~~Ll~~Iv~---------~ppP~lP~~~fS~ef~~FV---~~CL~Kdp~~R~s~~qLl~ 334 (364)
T KOG0581|consen 276 PYPPPNPPYLDIFELLCAIVD---------EPPPRLPEGEFSPEFRSFV---SCCLRKDPSERPSAKQLLQ 334 (364)
T ss_pred CCCCcCCCCCCHHHHHHHHhc---------CCCCCCCcccCCHHHHHHH---HHHhcCCcccCCCHHHHhc
Confidence 9876411 122223332211 011334321 333444444 4899999999999998764
|
|
| >KOG4721 consensus Serine/threonine protein kinase, contains leucine zipper domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.6e-16 Score=170.63 Aligned_cols=134 Identities=20% Similarity=0.268 Sum_probs=95.5
Q ss_pred hhccCCCCCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCC
Q 038019 635 VLVGIGSKPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRA 714 (866)
Q Consensus 635 ~~~~~~~~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~ 714 (866)
+++.....||++...+-..|+.|||-++.+.+-. .....+||+.|||||+++....++|+||||||||||||+||.-
T Consensus 233 IIHRDLKSPNiLIs~~d~VKIsDFGTS~e~~~~S---TkMSFaGTVaWMAPEvIrnePcsEKVDIwSfGVVLWEmLT~Ei 309 (904)
T KOG4721|consen 233 IIHRDLKSPNILISYDDVVKISDFGTSKELSDKS---TKMSFAGTVAWMAPEVIRNEPCSEKVDIWSFGVVLWEMLTGEI 309 (904)
T ss_pred HhhhccCCCceEeeccceEEeccccchHhhhhhh---hhhhhhhhHhhhCHHHhhcCCcccccceehhHHHHHHHHhcCC
Confidence 4555566789887777788899999998876531 1223589999999999999999999999999999999999999
Q ss_pred CCCCCchhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHh
Q 038019 715 SSDKSLDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLA 785 (866)
Q Consensus 715 p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~ 785 (866)
||...... .+-|.. | ...+.- ..+..+..-+.-+...||+..|..||++++++..|+
T Consensus 310 PYkdVdss----AIIwGV-----G--sNsL~L---pvPstcP~GfklL~Kqcw~sKpRNRPSFrqil~Hld 366 (904)
T KOG4721|consen 310 PYKDVDSS----AIIWGV-----G--SNSLHL---PVPSTCPDGFKLLLKQCWNSKPRNRPSFRQILLHLD 366 (904)
T ss_pred Cccccchh----eeEEec-----c--CCcccc---cCcccCchHHHHHHHHHHhcCCCCCccHHHHHHHHh
Confidence 98643211 111211 0 011111 122233333334555899999999999999999986
|
|
| >KOG1095 consensus Protein tyrosine kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.59 E-value=5.1e-16 Score=183.02 Aligned_cols=133 Identities=21% Similarity=0.257 Sum_probs=98.0
Q ss_pred CCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHh-cCCCCCCCc
Q 038019 642 KPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIIS-GRASSDKSL 720 (866)
Q Consensus 642 ~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~t-g~~p~~~~~ 720 (866)
..|.+..+...+|+.|||+++.|-...|-.+-.-..-.+.|||||.+.++.+|.|+|||||||+|||++| |..||....
T Consensus 830 aRNCLL~~~r~VKIaDFGlArDiy~~~yyr~~~~a~lPvkWm~PEsl~d~iFtskSDvWsFGVllWEifslG~~PY~~~~ 909 (1025)
T KOG1095|consen 830 ARNCLLDERRVVKIADFGLARDIYDKDYYRKHGEAMLPVKWMPPESLKDGIFTSKSDVWSFGVLLWEIFSLGATPYPSRS 909 (1025)
T ss_pred hhheeecccCcEEEcccchhHhhhhchheeccCccccceecCCHHHHhhcccccccchhhhHHHHHHHHhCCCCCCCCcc
Confidence 3477888888899999999997765544221111122369999999999999999999999999999999 889987655
Q ss_pred hhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhcCcC
Q 038019 721 DMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLAGDIE 789 (866)
Q Consensus 721 ~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~~~~~ 789 (866)
..+... .| .+.|+ | +.+..+..++.+|+..||+.+|++||+++.+++.++..+.
T Consensus 910 n~~v~~--~~----~~ggR--------L-~~P~~CP~~ly~lM~~CW~~~pe~RP~F~~i~~q~~~i~~ 963 (1025)
T KOG1095|consen 910 NFEVLL--DV----LEGGR--------L-DPPSYCPEKLYQLMLQCWKHDPEDRPSFRTIVEQDPAISN 963 (1025)
T ss_pred hHHHHH--HH----HhCCc--------c-CCCCCCChHHHHHHHHHccCChhhCccHHHHHhhhhhhhh
Confidence 433211 11 22232 2 2234456677789999999999999999999998875443
|
|
| >KOG0193 consensus Serine/threonine protein kinase RAF [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.4e-15 Score=165.68 Aligned_cols=143 Identities=18% Similarity=0.275 Sum_probs=99.2
Q ss_pred hhhccCCCCCcccCHHHHHHHhcCCccccccC--CCCceeEEEeecCCCCccCceeeecC---CCCchhHHHHHHHHHHH
Q 038019 634 EVLVGIGSKPNIFGYAELRSATKDFNRSNKLG--EGGYGPVYKVTANSYGYLAPEYAMRG---HLTEKADVFSFGVVALE 708 (866)
Q Consensus 634 ~~~~~~~~~~~~~~~~~~~~~~~dF~~~~~lg--~g~~g~vy~~~~gt~gY~aPE~~~~~---~~t~ksDVySfGvvLlE 708 (866)
++++..-..-|||..++++.++.|||++-+-+ .|+ .-+.--.|.+-|||||+++.+ .|+..+||||||||+||
T Consensus 508 ~IIHrDLKSnNIFl~~~~kVkIgDFGLatvk~~w~g~--~q~~qp~gsilwmAPEvIRmqd~nPfS~qSDVYaFGiV~YE 585 (678)
T KOG0193|consen 508 NIIHRDLKSNNIFLHEDLKVKIGDFGLATVKTRWSGE--QQLEQPHGSLLWMAPEVIRMQDDNPFSFQSDVYAFGIVWYE 585 (678)
T ss_pred hhhhhhccccceEEccCCcEEEecccceeeeeeeccc--cccCCCccchhhhcHHHHhhcccCCCCcccchhhhhHHHHH
Confidence 35555555568999999999999999875432 111 112223578899999999854 68999999999999999
Q ss_pred HHhcCCCCCCCchhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhcCc
Q 038019 709 IISGRASSDKSLDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLAGDI 788 (866)
Q Consensus 709 l~tg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~~~~ 788 (866)
|+||.-||.....+..+..+ |+ ..+.|++......+..++.+|...||..++++||.+.+|+.+|+...
T Consensus 586 Lltg~lPysi~~~dqIifmV---------Gr--G~l~pd~s~~~s~~pk~mk~Ll~~C~~~~~~eRP~F~~il~~l~~l~ 654 (678)
T KOG0193|consen 586 LLTGELPYSIQNRDQIIFMV---------GR--GYLMPDLSKIRSNCPKAMKRLLSDCWKFDREERPLFPQLLSKLEELL 654 (678)
T ss_pred HHhCcCCcCCCChhheEEEe---------cc--cccCccchhhhccCHHHHHHHHHHHHhcCcccCccHHHHHHHHHHhh
Confidence 99999999833322211111 11 22334442223344455556666999999999999999999888665
Q ss_pred C
Q 038019 789 E 789 (866)
Q Consensus 789 ~ 789 (866)
.
T Consensus 655 ~ 655 (678)
T KOG0193|consen 655 P 655 (678)
T ss_pred h
Confidence 5
|
|
| >smart00750 KIND kinase non-catalytic C-lobe domain | Back alignment and domain information |
|---|
Probab=99.53 E-value=2e-14 Score=142.66 Aligned_cols=126 Identities=16% Similarity=0.112 Sum_probs=83.6
Q ss_pred cccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCCchhh
Q 038019 644 NIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSLDME 723 (866)
Q Consensus 644 ~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~~~ 723 (866)
|++...+...+. ||.++..+... ..||..|||||++.++.++.|+|||||||++|||+||+.|+.......
T Consensus 41 Nil~~~~~~~~~--fG~~~~~~~~~-------~~g~~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~p~~~~~~~~ 111 (176)
T smart00750 41 NILLTWDGLLKL--DGSVAFKTPEQ-------SRVDPYFMAPEVIQGQSYTEKADIYSLGITLYEALDYELPYNEERELS 111 (176)
T ss_pred cEeEcCccceee--ccceEeecccc-------CCCcccccChHHhcCCCCcchhhHHHHHHHHHHHHhCCCCccccchhc
Confidence 555555555555 88877665422 157899999999999999999999999999999999999986432211
Q ss_pred hhcHHHHHHHHhhcCCcccccCCcccccCHHHH--HHHHHHHHHccCCCCCCCCCHHHHHHHHhc
Q 038019 724 KIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEA--LRVIGVALLCTQTSPMMRPPMSRVVAMLAG 786 (866)
Q Consensus 724 ~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~--~~~~~la~~C~~~~p~~RPsm~~V~~~L~~ 786 (866)
..+..+...... .++.-........ ..+.+++.+|++.+|++||++.|+++.+..
T Consensus 112 -~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~i~~cl~~~p~~Rp~~~~ll~~~~~ 168 (176)
T smart00750 112 -AILEILLNGMPA-------DDPRDRSNLESVSAARSFADFMRVCASRLPQRREAANHYLAHCRA 168 (176)
T ss_pred -HHHHHHHHHhcc-------CCccccccHHHHHhhhhHHHHHHHHHhcccccccCHHHHHHHHHH
Confidence 111111111110 1111000111111 246778889999999999999999998763
|
It is an interaction domain identified as being similar to the C-terminal protein kinase catalytic fold (C lobe). Its presence at the N terminus of signalling proteins and the absence of the active-site residues in the catalytic and activation loops suggest that it folds independently and is likely to be non-catalytic. The occurrence of KIND only in metazoa implies that it has evolved from the catalytic protein kinase domain into an interaction domain possibly by keeping the substrate-binding features |
| >cd05048 PTKc_Ror Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.2e-14 Score=154.09 Aligned_cols=131 Identities=24% Similarity=0.319 Sum_probs=94.8
Q ss_pred CCCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHh-cCCCCCCC
Q 038019 641 SKPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIIS-GRASSDKS 719 (866)
Q Consensus 641 ~~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~t-g~~p~~~~ 719 (866)
...|++..++...++.|||.++.+..+.+..+.....++..|+|||+...+.++.|+|||||||+++||+| |+.|+...
T Consensus 151 kp~Nil~~~~~~~~L~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~sDv~slG~il~el~~~g~~p~~~~ 230 (283)
T cd05048 151 AARNCLVGEGLTVKISDFGLSRDIYSADYYRVQSKSLLPVRWMPPEAILYGKFTTESDIWSFGVVLWEIFSYGLQPYYGF 230 (283)
T ss_pred ccceEEEcCCCcEEECCCcceeeccccccccccCCCcccccccCHHHhccCcCchhhhHHHHHHHHHHHHcCCCCCCCCC
Confidence 34467777777788999999887765544333444467889999999999999999999999999999998 99998754
Q ss_pred chhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhc
Q 038019 720 LDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLAG 786 (866)
Q Consensus 720 ~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~~ 786 (866)
...+ +.+++. .+... ..+.....++.+++..||+.+|++||+|+||++.|+.
T Consensus 231 ~~~~---~~~~i~----~~~~~--------~~~~~~~~~~~~l~~~c~~~~p~~Rp~~~~i~~~l~~ 282 (283)
T cd05048 231 SNQE---VIEMIR----SRQLL--------PCPEDCPARVYALMIECWNEIPARRPRFKDIHTRLRS 282 (283)
T ss_pred CHHH---HHHHHH----cCCcC--------CCcccCCHHHHHHHHHHccCChhhCcCHHHHHHHHhc
Confidence 4322 222221 11111 1122233456677789999999999999999999974
|
Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor (Ror) subfamily; catalytic (c) domain. The Ror subfamily consists of Ror1, Ror2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimer |
| >PHA02988 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=2e-14 Score=154.43 Aligned_cols=125 Identities=18% Similarity=0.227 Sum_probs=89.1
Q ss_pred CcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeec--CCCCchhHHHHHHHHHHHHHhcCCCCCCCc
Q 038019 643 PNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMR--GHLTEKADVFSFGVVALEIISGRASSDKSL 720 (866)
Q Consensus 643 ~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~--~~~t~ksDVySfGvvLlEl~tg~~p~~~~~ 720 (866)
.|++..++...++.|||.++.+....+ ...||..|+|||++.. ..++.|+|||||||++|||+||+.|+....
T Consensus 152 ~nill~~~~~~kl~dfg~~~~~~~~~~-----~~~~~~~y~aPE~~~~~~~~~~~k~Di~SlGvil~el~~g~~Pf~~~~ 226 (283)
T PHA02988 152 VSFLVTENYKLKIICHGLEKILSSPPF-----KNVNFMVYFSYKMLNDIFSEYTIKDDIYSLGVVLWEIFTGKIPFENLT 226 (283)
T ss_pred hhEEECCCCcEEEcccchHhhhccccc-----cccCcccccCHHHhhhccccccchhhhhHHHHHHHHHHHCCCCCCCCC
Confidence 466666667788899999987765443 2357899999999875 789999999999999999999999998543
Q ss_pred hhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhc
Q 038019 721 DMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLAG 786 (866)
Q Consensus 721 ~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~~ 786 (866)
..+ +...+ ...+ ..+.+.. .....+.+++.+||+.||++||+|.||++.|+.
T Consensus 227 ~~~---~~~~i---~~~~-----~~~~~~~---~~~~~l~~li~~cl~~dp~~Rps~~ell~~l~~ 278 (283)
T PHA02988 227 TKE---IYDLI---INKN-----NSLKLPL---DCPLEIKCIVEACTSHDSIKRPNIKEILYNLSL 278 (283)
T ss_pred HHH---HHHHH---HhcC-----CCCCCCC---cCcHHHHHHHHHHhcCCcccCcCHHHHHHHHHH
Confidence 222 22211 1111 1111211 122345556679999999999999999999974
|
|
| >cd05102 PTKc_VEGFR3 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 3 | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.1e-14 Score=158.51 Aligned_cols=137 Identities=23% Similarity=0.223 Sum_probs=93.2
Q ss_pred ccCCCCCcccCHHHHHHHhcCCccccccCCCCceeEEEe-ecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHh-cCC
Q 038019 637 VGIGSKPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKV-TANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIIS-GRA 714 (866)
Q Consensus 637 ~~~~~~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~-~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~t-g~~ 714 (866)
+......|++...+...++.|||.++.+..+... +..+ ..++..|||||++.+..++.|+|||||||++|||+| |+.
T Consensus 197 HrDiKp~Nil~~~~~~~kl~DfG~a~~~~~~~~~-~~~~~~~~~~~y~aPE~~~~~~~~~~sDiwslG~il~el~~~g~~ 275 (338)
T cd05102 197 HRDLAARNILLSENNVVKICDFGLARDIYKDPDY-VRKGSARLPLKWMAPESIFDKVYTTQSDVWSFGVLLWEIFSLGAS 275 (338)
T ss_pred CCCCccceEEEcCCCcEEEeecccccccccCcch-hcccCCCCCccccCcHHhhcCCCCcccCHHHHHHHHHHHHhCCCC
Confidence 3333344777777777889999999876543221 1122 245678999999999999999999999999999997 999
Q ss_pred CCCCCchhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhcCc
Q 038019 715 SSDKSLDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLAGDI 788 (866)
Q Consensus 715 p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~~~~ 788 (866)
|+......+. .......+.. +.... .....+.+++..|++.+|++||+|.||+++|+...
T Consensus 276 pf~~~~~~~~------~~~~~~~~~~-----~~~~~---~~~~~l~~li~~cl~~dp~~RPs~~el~~~l~~~~ 335 (338)
T cd05102 276 PYPGVQINEE------FCQRLKDGTR-----MRAPE---NATPEIYRIMLACWQGDPKERPTFSALVEILGDLL 335 (338)
T ss_pred CCCCCCccHH------HHHHHhcCCC-----CCCCC---CCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHH
Confidence 9875332111 1111222211 11111 12234667788999999999999999999998643
|
Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 3 (VEGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR3 (or Flt4) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. V |
| >cd05094 PTKc_TrkC Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase C | Back alignment and domain information |
|---|
Probab=99.45 E-value=7.7e-14 Score=150.59 Aligned_cols=136 Identities=23% Similarity=0.232 Sum_probs=96.0
Q ss_pred CCCCCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHh-cCCCCC
Q 038019 639 IGSKPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIIS-GRASSD 717 (866)
Q Consensus 639 ~~~~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~t-g~~p~~ 717 (866)
.....|++...+...++.|||.++.+....+-..-....++..|+|||+.....++.++|||||||+++||+| |+.|+.
T Consensus 148 dlkp~Nil~~~~~~~~l~dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~ 227 (291)
T cd05094 148 DLATRNCLVGANLLVKIGDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSFGVILWEIFTYGKQPWF 227 (291)
T ss_pred ccCcceEEEccCCcEEECCCCcccccCCCceeecCCCCCcceeecChHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCC
Confidence 3344477777777888999999987765543222223356788999999999999999999999999999999 999986
Q ss_pred CCchhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhcCcC
Q 038019 718 KSLDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLAGDIE 789 (866)
Q Consensus 718 ~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~~~~~ 789 (866)
.....+ ..+. ...+...+. .......+.+++.+|++.+|++||+|.+|+++|+....
T Consensus 228 ~~~~~~---~~~~----~~~~~~~~~--------~~~~~~~~~~li~~~l~~~P~~Rpt~~~v~~~l~~~~~ 284 (291)
T cd05094 228 QLSNTE---VIEC----ITQGRVLER--------PRVCPKEVYDIMLGCWQREPQQRLNIKEIYKILHALGK 284 (291)
T ss_pred CCCHHH---HHHH----HhCCCCCCC--------CccCCHHHHHHHHHHcccChhhCcCHHHHHHHHHHHHh
Confidence 543322 2221 222211111 11123346677889999999999999999999986543
|
Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase C (TrkC); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkC is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkC to its ligand, neurotrophin 3 (NT3), results in receptor oligomerization and activation of the catalytic domain. TrkC is broadly expressed in the nervous system and in some n |
| >cd05111 PTK_HER3 Pseudokinase domain of the Protein Tyrosine Kinase, HER3 | Back alignment and domain information |
|---|
Probab=99.44 E-value=9.2e-14 Score=149.01 Aligned_cols=137 Identities=20% Similarity=0.252 Sum_probs=96.6
Q ss_pred cCCCCCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHh-cCCCC
Q 038019 638 GIGSKPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIIS-GRASS 716 (866)
Q Consensus 638 ~~~~~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~t-g~~p~ 716 (866)
......|++..++...++.|||.++.+..+.....+....++.+|+|||+...+.++.++|||||||++||++| |+.|+
T Consensus 133 ~dlkp~nili~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~~pE~~~~~~~~~~~Dv~slG~il~el~t~g~~p~ 212 (279)
T cd05111 133 RNLAARNILLKSDSIVQIADFGVADLLYPDDKKYFYSEHKTPIKWMALESILFGRYTHQSDVWSYGVTVWEMMSYGAEPY 212 (279)
T ss_pred cccCcceEEEcCCCcEEEcCCccceeccCCCcccccCCCCCcccccCHHHhccCCcCchhhHHHHHHHHHHHHcCCCCCC
Confidence 33344577777777788999999988765543333444567889999999999999999999999999999998 99998
Q ss_pred CCCchhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhcCcC
Q 038019 717 DKSLDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLAGDIE 789 (866)
Q Consensus 717 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~~~~~ 789 (866)
....... +.++ ...+.. ..++.. ....+..++..||+.+|++||+|.|++++|.....
T Consensus 213 ~~~~~~~---~~~~----~~~~~~--~~~~~~------~~~~~~~li~~c~~~~p~~Rps~~el~~~l~~~~~ 270 (279)
T cd05111 213 AGMRPHE---VPDL----LEKGER--LAQPQI------CTIDVYMVMVKCWMIDENVRPTFKELANEFTRMAR 270 (279)
T ss_pred CCCCHHH---HHHH----HHCCCc--CCCCCC------CCHHHHHHHHHHcCCCcccCcCHHHHHHHHHHHHh
Confidence 7543222 2222 122211 111111 12234556779999999999999999999986443
|
Protein Tyrosine Kinase (PTK) family; HER3 (ErbB3); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER3 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr r |
| >KOG4278 consensus Protein tyrosine kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.44 E-value=7.3e-14 Score=151.50 Aligned_cols=126 Identities=21% Similarity=0.236 Sum_probs=95.8
Q ss_pred cccCHHHHHHHhcCCccccccCCCCceeEEEeecC---CCCccCceeeecCCCCchhHHHHHHHHHHHHHh-cCCCCCCC
Q 038019 644 NIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTAN---SYGYLAPEYAMRGHLTEKADVFSFGVVALEIIS-GRASSDKS 719 (866)
Q Consensus 644 ~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~g---t~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~t-g~~p~~~~ 719 (866)
|.+.-+.-..++.|||+++++-. ..|.+.+| .+.|.|||-+....++.|+|||+|||+|||+.| |-.||...
T Consensus 395 NCLVgEnhiVKvADFGLsRlMtg----DTYTAHAGAKFPIKWTAPEsLAyNtFSiKSDVWAFGVLLWEIATYGMsPYPGi 470 (1157)
T KOG4278|consen 395 NCLVGENHIVKVADFGLSRLMTG----DTYTAHAGAKFPIKWTAPESLAYNTFSIKSDVWAFGVLLWEIATYGMSPYPGI 470 (1157)
T ss_pred hccccccceEEeeccchhhhhcC----CceecccCccCcccccCcccccccccccchhhHHHHHHHHHHHhcCCCCCCCc
Confidence 44555555678999999999863 45665555 579999999999999999999999999999998 77787643
Q ss_pred chhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhcCc
Q 038019 720 LDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLAGDI 788 (866)
Q Consensus 720 ~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~~~~ 788 (866)
.- ..|+.+++.|--+ +.++.|..++.++++.||+-+|.+||+++|+-+.+|..+
T Consensus 471 dl-------SqVY~LLEkgyRM--------~~PeGCPpkVYeLMraCW~WsPsDRPsFaeiHqafEtmf 524 (1157)
T KOG4278|consen 471 DL-------SQVYGLLEKGYRM--------DGPEGCPPKVYELMRACWNWSPSDRPSFAEIHQAFETMF 524 (1157)
T ss_pred cH-------HHHHHHHhccccc--------cCCCCCCHHHHHHHHHHhcCCcccCccHHHHHHHHHHHh
Confidence 22 1244444443211 234556778899999999999999999999999988544
|
|
| >cd05091 PTKc_Ror2 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 2 | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.2e-13 Score=148.45 Aligned_cols=132 Identities=20% Similarity=0.286 Sum_probs=91.9
Q ss_pred CCCCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHh-cCCCCCC
Q 038019 640 GSKPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIIS-GRASSDK 718 (866)
Q Consensus 640 ~~~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~t-g~~p~~~ 718 (866)
....|++..++...++.|||.++.+....+-.......+++.|+|||++..+.++.++||||||++++||+| |..|+..
T Consensus 150 lkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~~~g~~p~~~ 229 (283)
T cd05091 150 LATRNVLVFDKLNVKISDLGLFREVYAADYYKLMGNSLLPIRWMSPEAIMYGKFSIDSDIWSYGVVLWEVFSYGLQPYCG 229 (283)
T ss_pred cchhheEecCCCceEecccccccccccchheeeccCccCCccccCHHHHhcCCCCcchhHHHHHHHHHHHHcCCCCCCCC
Confidence 334467766667788999999888765544322233356789999999998999999999999999999998 8778764
Q ss_pred CchhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhc
Q 038019 719 SLDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLAG 786 (866)
Q Consensus 719 ~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~~ 786 (866)
.... .+.+.+ ..+... ..+......+.+++..|++.+|++||+|.+|++.|+.
T Consensus 230 ~~~~---~~~~~i----~~~~~~--------~~~~~~~~~~~~li~~cl~~~p~~RP~~~~i~~~l~~ 282 (283)
T cd05091 230 YSNQ---DVIEMI----RNRQVL--------PCPDDCPAWVYTLMLECWNEFPSRRPRFKDIHSRLRT 282 (283)
T ss_pred CCHH---HHHHHH----HcCCcC--------CCCCCCCHHHHHHHHHHhCCCcccCCCHHHHHHHhhC
Confidence 3221 122221 111111 1111223345667789999999999999999999873
|
Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 2 (Ror2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly |
| >KOG0582 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.4e-13 Score=143.52 Aligned_cols=133 Identities=28% Similarity=0.328 Sum_probs=95.2
Q ss_pred ccCCCCCcccCHHHHHHHhcCCccccccCCCCceeEEE--eecCCCCccCceeee--cCCCCchhHHHHHHHHHHHHHhc
Q 038019 637 VGIGSKPNIFGYAELRSATKDFNRSNKLGEGGYGPVYK--VTANSYGYLAPEYAM--RGHLTEKADVFSFGVVALEIISG 712 (866)
Q Consensus 637 ~~~~~~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~--~~~gt~gY~aPE~~~--~~~~t~ksDVySfGvvLlEl~tg 712 (866)
|+..+..||+.+.+...++.|||.+-.+-.+|.-.|++ ..+||+.|||||+.+ -..|+.|+|||||||..+||++|
T Consensus 149 HRdvKAgnILi~~dG~VkLadFgvsa~l~~~G~R~~~rf~tfvgtp~wmAPEvl~q~~~GYdfKaDIwSfGITA~ELA~G 228 (516)
T KOG0582|consen 149 HRDVKAGNILIDSDGTVKLADFGVSASLFDSGDRQVTRFNTFVGTPCWMAPEVLMQQLHGYDFKADIWSFGITACELAHG 228 (516)
T ss_pred ecccccccEEEcCCCcEEEcCceeeeeecccCceeeEeeccccCcccccChHHhhhcccCccchhhhhhhhHHHHHHhcC
Confidence 33445568999999999999999988887776555554 458999999999954 35799999999999999999999
Q ss_pred CCCCCCCchhhhhcHHHHHHHHhhcCCcccccCCcc--cccCHHH----HHHHHHHHHHccCCCCCCCCCHHHHH
Q 038019 713 RASSDKSLDMEKIYLLEWAWNLHENNQSFGLVDPTL--TEFNDKE----ALRVIGVALLCTQTSPMMRPPMSRVV 781 (866)
Q Consensus 713 ~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l--~~~~~~~----~~~~~~la~~C~~~~p~~RPsm~~V~ 781 (866)
..||....+... |..- + .+.. |.+ ...+.++ -..+.++.-.|++.||.+|||.++.+
T Consensus 229 ~aPf~k~pPmkv--Ll~t----L-qn~p-----p~~~t~~~~~d~~k~~~ksf~e~i~~CL~kDP~kRptAskLl 291 (516)
T KOG0582|consen 229 HAPFSKYPPMKV--LLLT----L-QNDP-----PTLLTSGLDKDEDKKFSKSFREMIALCLVKDPSKRPTASKLL 291 (516)
T ss_pred CCCcccCChHHH--HHHH----h-cCCC-----CCcccccCChHHhhhhcHHHHHHHHHHhhcCcccCCCHHHHh
Confidence 999998776542 1111 1 1111 111 1111111 12344566689999999999999876
|
|
| >PF07714 Pkinase_Tyr: Protein tyrosine kinase Protein kinase; unclassified specificity | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.3e-14 Score=151.83 Aligned_cols=128 Identities=23% Similarity=0.319 Sum_probs=87.1
Q ss_pred CCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHh-cCCCCCCCc
Q 038019 642 KPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIIS-GRASSDKSL 720 (866)
Q Consensus 642 ~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~t-g~~p~~~~~ 720 (866)
..+++.+++...++.||+....+.............+...|+|||++....++.|+||||||+++|||+| |+.|+....
T Consensus 131 ~~nill~~~~~~Kl~~f~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~ksDVysfG~~l~ei~~~~~~p~~~~~ 210 (259)
T PF07714_consen 131 PSNILLDSNGQVKLSDFGLSRPISEKSKYKNDSSQQLPLRYLAPEVLKDGEYTKKSDVYSFGMLLYEILTLGKFPFSDYD 210 (259)
T ss_dssp GGGEEEETTTEEEEESTTTGEETTTSSSEEESTTSESGGGGS-HHHHHHSEESHHHHHHHHHHHHHHHHTTSSGTTTTSC
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 3477888788889999999988855444333333457789999999999999999999999999999999 778876542
Q ss_pred hhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHH
Q 038019 721 DMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAML 784 (866)
Q Consensus 721 ~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L 784 (866)
.. .+.+.+ .++.... .+......+..++..||+.+|++||+|.++++.|
T Consensus 211 ~~---~~~~~~----~~~~~~~--------~~~~~~~~~~~li~~C~~~~p~~RPs~~~i~~~L 259 (259)
T PF07714_consen 211 NE---EIIEKL----KQGQRLP--------IPDNCPKDIYSLIQQCWSHDPEKRPSFQEILQEL 259 (259)
T ss_dssp HH---HHHHHH----HTTEETT--------SBTTSBHHHHHHHHHHT-SSGGGS--HHHHHHHH
T ss_pred cc---cccccc----cccccce--------eccchhHHHHHHHHHHcCCChhhCcCHHHHHhcC
Confidence 21 122221 2221111 1111223455677799999999999999999876
|
Tyrosine kinase, catalytic domain; InterPro: IPR001245 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Tyrosine-protein kinases can transfer a phosphate group from ATP to a tyrosine residue in a protein. These enzymes can be divided into two main groups []: Receptor tyrosine kinases (RTK), which are transmembrane proteins involved in signal transduction; they play key roles in growth, differentiation, metabolism, adhesion, motility, death and oncogenesis []. RTKs are composed of 3 domains: an extracellular domain (binds ligand), a transmembrane (TM) domain, and an intracellular catalytic domain (phosphorylates substrate). The TM domain plays an important role in the dimerisation process necessary for signal transduction []. Cytoplasmic / non-receptor tyrosine kinases, which act as regulatory proteins, playing key roles in cell differentiation, motility, proliferation, and survival. For example, the Src-family of protein-tyrosine kinases []. ; GO: 0004672 protein kinase activity, 0006468 protein phosphorylation; PDB: 2HYY_C 1OPL_A 2V7A_A 2G2H_B 2G1T_A 3PYY_A 3CS9_D 2HZI_A 2E2B_A 2HIW_A .... |
| >cd05096 PTKc_DDR1 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 1 | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.9e-13 Score=147.12 Aligned_cols=138 Identities=21% Similarity=0.210 Sum_probs=92.6
Q ss_pred CCCCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhc--CCCCC
Q 038019 640 GSKPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISG--RASSD 717 (866)
Q Consensus 640 ~~~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg--~~p~~ 717 (866)
....|++...+...++.|||.++.+..+..-.+.....++..|||||+...+.++.++|||||||+++||+++ ..|+.
T Consensus 164 lkp~Nill~~~~~~kl~DfG~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~~~~~~~p~~ 243 (304)
T cd05096 164 LATRNCLVGENLTIKIADFGMSRNLYAGDYYRIQGRAVLPIRWMAWECILMGKFTTASDVWAFGVTLWEILMLCKEQPYG 243 (304)
T ss_pred cchhheEEcCCccEEECCCccceecccCceeEecCcCCCCccccCHHHHhcCCCCchhhhHHHHHHHHHHHHccCCCCCC
Confidence 3344777777778899999999877655432222223457899999999999999999999999999999974 55665
Q ss_pred CCchhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHh
Q 038019 718 KSLDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLA 785 (866)
Q Consensus 718 ~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~ 785 (866)
.... ....+++......... ... +. .+......+.+++.+||+.+|++||+|.||++.|+
T Consensus 244 ~~~~---~~~~~~~~~~~~~~~~-~~~-~~---~~~~~~~~~~~li~~cl~~~p~~RPs~~~i~~~l~ 303 (304)
T cd05096 244 ELTD---EQVIENAGEFFRDQGR-QVY-LF---RPPPCPQGLYELMLQCWSRDCRERPSFSDIHAFLT 303 (304)
T ss_pred cCCH---HHHHHHHHHHhhhccc-ccc-cc---CCCCCCHHHHHHHHHHccCCchhCcCHHHHHHHHh
Confidence 4322 2233333332222111 000 00 01112345667788999999999999999999986
|
Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 1 (DDR1) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR1 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR1 binds to all collagens tested to date (types I-IV). It is widely expressed in many tissues. It is abundant in the brain and is also found in k |
| >KOG1025 consensus Epidermal growth factor receptor EGFR and related tyrosine kinases [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.40 E-value=3.4e-13 Score=151.21 Aligned_cols=97 Identities=22% Similarity=0.221 Sum_probs=75.6
Q ss_pred CCccCceeeecCCCCchhHHHHHHHHHHHHHh-cCCCCCCCchhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHH
Q 038019 680 YGYLAPEYAMRGHLTEKADVFSFGVVALEIIS-GRASSDKSLDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALR 758 (866)
Q Consensus 680 ~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~t-g~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~ 758 (866)
+.|||=|.++...+|.++|||||||.+||++| |.+|++.....+..++ ++.|. +| ..++.+...
T Consensus 864 ikwmale~i~~~~~thqSDVWsfGVtiWElmTFGa~Py~gi~~~eI~dl-------le~ge-------RL-sqPpiCtiD 928 (1177)
T KOG1025|consen 864 IKWMALESIRIRKYTHQSDVWSFGVTIWELMTFGAKPYDGIPAEEIPDL-------LEKGE-------RL-SQPPICTID 928 (1177)
T ss_pred cHHHHHHHhhccCCCchhhhhhhhhhHHHHHhcCCCccCCCCHHHhhHH-------Hhccc-------cC-CCCCCccHH
Confidence 57888899999999999999999999999999 9999987665443322 22221 11 335556778
Q ss_pred HHHHHHHccCCCCCCCCCHHHHHHHHhcCcCCC
Q 038019 759 VIGVALLCTQTSPMMRPPMSRVVAMLAGDIEVG 791 (866)
Q Consensus 759 ~~~la~~C~~~~p~~RPsm~~V~~~L~~~~~~~ 791 (866)
+..+++.||..|++.||++++....+....+.+
T Consensus 929 Vy~~mvkCwmid~~~rp~fkel~~~fs~~ardp 961 (1177)
T KOG1025|consen 929 VYMVMVKCWMIDADSRPTFKELAEEFSRMARDP 961 (1177)
T ss_pred HHHHHHHHhccCcccCccHHHHHHHHHHHhcCc
Confidence 888899999999999999999988877655443
|
|
| >KOG0596 consensus Dual specificity; serine/threonine and tyrosine kinase [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.5e-13 Score=148.26 Aligned_cols=133 Identities=23% Similarity=0.331 Sum_probs=99.9
Q ss_pred hccCCCCCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecC-----------CCCchhHHHHHHH
Q 038019 636 LVGIGSKPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRG-----------HLTEKADVFSFGV 704 (866)
Q Consensus 636 ~~~~~~~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~-----------~~t~ksDVySfGv 704 (866)
+.+.+.+|.-|..-+...++-|||+++.|.......+-...+||+.||+||.+... +++.++||||+||
T Consensus 481 IVHSDLKPANFLlVkG~LKLIDFGIA~aI~~DTTsI~kdsQvGT~NYMsPEAl~~~~s~~~~~~~k~Ki~r~SDvWSLGC 560 (677)
T KOG0596|consen 481 IVHSDLKPANFLLVKGRLKLIDFGIANAIQPDTTSIVKDSQVGTVNYMSPEALTDMSSSRENGKSKIKISRKSDVWSLGC 560 (677)
T ss_pred eeecCCCcccEEEEeeeEEeeeechhcccCccccceeeccccCcccccCHHHHhhccccccCCCcceeecCccchhhhhh
Confidence 45567788889888899999999999999988876666778999999999976422 4778999999999
Q ss_pred HHHHHHhcCCCCCCCchhhhhcHHHHHHHHhhcCCcccccCCcc-cccCH-HHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 705 VALEIISGRASSDKSLDMEKIYLLEWAWNLHENNQSFGLVDPTL-TEFND-KEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 705 vLlEl~tg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l-~~~~~-~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
+||+|+.||.||.... -.|++ +..+.||.- -+++. ..-.++++++-.|++.||++||+..|+++
T Consensus 561 ILYqMvYgktPf~~~~-------n~~aK-------l~aI~~P~~~Iefp~~~~~~~li~~mK~CL~rdPkkR~si~eLLq 626 (677)
T KOG0596|consen 561 ILYQMVYGKTPFGQII-------NQIAK-------LHAITDPNHEIEFPDIPENDELIDVMKCCLARDPKKRWSIPELLQ 626 (677)
T ss_pred HHHHHHhcCCchHHHH-------HHHHH-------HHhhcCCCccccccCCCCchHHHHHHHHHHhcCcccCCCcHHHhc
Confidence 9999999999986321 12222 224566633 12211 01122777888999999999999999875
|
|
| >KOG0591 consensus NIMA (never in mitosis)-related G2-specific serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.1e-13 Score=135.64 Aligned_cols=133 Identities=20% Similarity=0.225 Sum_probs=95.8
Q ss_pred hhccCCCCCcccCHHHHHHHhcCCccccccCCCC-ceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcC
Q 038019 635 VLVGIGSKPNIFGYAELRSATKDFNRSNKLGEGG-YGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGR 713 (866)
Q Consensus 635 ~~~~~~~~~~~~~~~~~~~~~~dF~~~~~lg~g~-~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~ 713 (866)
++++...+.|+|..+....++.|||+++.+.... |.+ ..+||+-||+||.++...|+.||||||.|||++||..-+
T Consensus 149 VmHRDIKPaNIFl~~~gvvKLGDfGL~r~l~s~~tfA~---S~VGTPyYMSPE~i~~~~Y~~kSDiWslGCllyEMcaL~ 225 (375)
T KOG0591|consen 149 VMHRDIKPANIFLTANGVVKLGDFGLGRFLSSKTTFAH---SLVGTPYYMSPERIHESGYNFKSDIWSLGCLLYEMCALQ 225 (375)
T ss_pred eeeccCcchheEEcCCCceeeccchhHhHhcchhHHHH---hhcCCCcccCHHHHhcCCCCcchhHHHHHHHHHHHHhcC
Confidence 4555556679999999999999999999986532 222 237999999999999999999999999999999999999
Q ss_pred CCCCCCchhhhhcHHHHHHHHhhcCCcccccCCccc-ccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHh
Q 038019 714 ASSDKSLDMEKIYLLEWAWNLHENNQSFGLVDPTLT-EFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLA 785 (866)
Q Consensus 714 ~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~-~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~ 785 (866)
.||... ++.+. .+.+..|.. |.++ +...+ .+-+++..|+..||+.||+....++.+.
T Consensus 226 ~PF~g~------n~~~L-~~KI~qgd~-----~~~p~~~YS~---~l~~li~~ci~vd~~~RP~t~~~v~di~ 283 (375)
T KOG0591|consen 226 SPFYGD------NLLSL-CKKIEQGDY-----PPLPDEHYST---DLRELINMCIAVDPEQRPDTVPYVQDIQ 283 (375)
T ss_pred CCcccc------cHHHH-HHHHHcCCC-----CCCcHHHhhh---HHHHHHHHHccCCcccCCCcchHHHHHH
Confidence 999753 22221 122333322 2222 22233 3445566899999999999555555444
|
|
| >cd05106 PTKc_CSF-1R Catalytic domain of the Protein Tyrosine Kinase, Colony-Stimulating Factor-1 Receptor | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.2e-13 Score=152.29 Aligned_cols=132 Identities=18% Similarity=0.289 Sum_probs=90.2
Q ss_pred CCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHh-cCCCCCCCc
Q 038019 642 KPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIIS-GRASSDKSL 720 (866)
Q Consensus 642 ~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~t-g~~p~~~~~ 720 (866)
..|++..++...++.|||.++.+..+....+.....++.+|||||+...+.++.++|||||||+++||++ |+.|+....
T Consensus 240 p~Nil~~~~~~~kL~DfGla~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwSlGvil~ellt~G~~Pf~~~~ 319 (374)
T cd05106 240 ARNVLLTDGRVAKICDFGLARDIMNDSNYVVKGNARLPVKWMAPESIFDCVYTVQSDVWSYGILLWEIFSLGKSPYPGIL 319 (374)
T ss_pred hheEEEeCCCeEEEeeceeeeeccCCcceeeccCCCCccceeCHHHhcCCCCCccccHHHHHHHHHHHHhCCCCCCcccc
Confidence 3466666666778899999987765443222222345678999999999999999999999999999998 999986533
Q ss_pred hhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhcC
Q 038019 721 DMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLAGD 787 (866)
Q Consensus 721 ~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~~~ 787 (866)
.... . ......+ ..+....... ..+.+++..|++.+|++||+|.+|+++|+..
T Consensus 320 ~~~~--~----~~~~~~~-----~~~~~~~~~~---~~l~~li~~cl~~dp~~RPs~~~l~~~l~~~ 372 (374)
T cd05106 320 VNSK--F----YKMVKRG-----YQMSRPDFAP---PEIYSIMKMCWNLEPTERPTFSQISQLIQRQ 372 (374)
T ss_pred ccHH--H----HHHHHcc-----cCccCCCCCC---HHHHHHHHHHcCCChhhCcCHHHHHHHHHHH
Confidence 2111 1 1111111 0111111112 3455666799999999999999999999864
|
Protein Tyrosine Kinase (PTK) family; Colony-Stimulating Factor-1 Receptor (CSF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CSF-1R, also called c-Fms, is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of CSF-1R to its ligand, CSF-1, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. CSF-1R signaling is criti |
| >KOG0199 consensus ACK and related non-receptor tyrosine kinases [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.4e-13 Score=151.78 Aligned_cols=127 Identities=19% Similarity=0.227 Sum_probs=93.7
Q ss_pred CcccCHHHHHHHhcCCccccccCCCCceeEEEee-cCCCCccCceeeecCCCCchhHHHHHHHHHHHHHh-cCCCCCCCc
Q 038019 643 PNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVT-ANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIIS-GRASSDKSL 720 (866)
Q Consensus 643 ~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~-~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~t-g~~p~~~~~ 720 (866)
-|++....-..|+.|||+.+-||++.--.|..+. .-.+.|.|||.+..++++.++|||+|||.+|||+| |..|+....
T Consensus 241 RNlllasprtVKI~DFGLmRaLg~ned~Yvm~p~rkvPfAWCaPEsLrh~kFShaSDvWmyGVTiWEMFtyGEePW~G~~ 320 (1039)
T KOG0199|consen 241 RNLLLASPRTVKICDFGLMRALGENEDMYVMAPQRKVPFAWCAPESLRHRKFSHASDVWMYGVTIWEMFTYGEEPWVGCR 320 (1039)
T ss_pred hhheecccceeeeecccceeccCCCCcceEecCCCcCcccccCHhHhccccccccchhhhhhhhHHhhhccCCCCCCCCC
Confidence 3566666666789999999999987533333322 34578999999999999999999999999999999 788887654
Q ss_pred hhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHH
Q 038019 721 DMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAML 784 (866)
Q Consensus 721 ~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L 784 (866)
+... . +.++++. +| .-+..+.+++.+++..||...|++|||+..+++.+
T Consensus 321 g~qI---L----~~iD~~e-------rL-pRPk~csedIY~imk~cWah~paDRptFsair~~~ 369 (1039)
T KOG0199|consen 321 GIQI---L----KNIDAGE-------RL-PRPKYCSEDIYQIMKNCWAHNPADRPTFSAIREDL 369 (1039)
T ss_pred HHHH---H----Hhccccc-------cC-CCCCCChHHHHHHHHHhccCCccccccHHHHHHhH
Confidence 3321 1 1122111 11 23445677888999999999999999999997443
|
|
| >PTZ00283 serine/threonine protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.5e-13 Score=158.71 Aligned_cols=127 Identities=22% Similarity=0.231 Sum_probs=89.6
Q ss_pred CCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCCch
Q 038019 642 KPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSLD 721 (866)
Q Consensus 642 ~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~ 721 (866)
..|++...+...++.|||.++.+.......+.....||++|+|||++....++.|+|||||||++|||++|+.|+.....
T Consensus 171 P~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~Gt~~Y~aPE~~~~~~~s~k~DVwSlGvilyeLltG~~Pf~~~~~ 250 (496)
T PTZ00283 171 SANILLCSNGLVKLGDFGFSKMYAATVSDDVGRTFCGTPYYVAPEIWRRKPYSKKADMFSLGVLLYELLTLKRPFDGENM 250 (496)
T ss_pred HHHEEEeCCCCEEEEecccCeeccccccccccccccCCcceeCHHHhCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCCH
Confidence 34777777777889999999877643323333445799999999999999999999999999999999999999975332
Q ss_pred hhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 038019 722 MEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAM 783 (866)
Q Consensus 722 ~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~ 783 (866)
.+.+.... .+. .++..... ...+.+++..|++.+|++||++.++++.
T Consensus 251 ------~~~~~~~~-~~~----~~~~~~~~----~~~l~~li~~~L~~dP~~RPs~~ell~~ 297 (496)
T PTZ00283 251 ------EEVMHKTL-AGR----YDPLPPSI----SPEMQEIVTALLSSDPKRRPSSSKLLNM 297 (496)
T ss_pred ------HHHHHHHh-cCC----CCCCCCCC----CHHHHHHHHHHcccChhhCcCHHHHHhC
Confidence 11222211 111 11111111 2335556679999999999999998753
|
|
| >cd05054 PTKc_VEGFR Catalytic domain of the Protein Tyrosine Kinases, Vascular Endothelial Growth Factor Receptors | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.8e-13 Score=149.29 Aligned_cols=134 Identities=22% Similarity=0.226 Sum_probs=92.3
Q ss_pred CCCCcccCHHHHHHHhcCCccccccCCCCceeEEEe-ecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHh-cCCCCC
Q 038019 640 GSKPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKV-TANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIIS-GRASSD 717 (866)
Q Consensus 640 ~~~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~-~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~t-g~~p~~ 717 (866)
....|++..++...++.|||.++.+..+.. .+..+ ..++..|||||++.+..++.|+|||||||+|+||+| |+.|+.
T Consensus 199 ikp~Nill~~~~~vkL~DfG~a~~~~~~~~-~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~SlGv~l~el~t~g~~p~~ 277 (337)
T cd05054 199 LAARNILLSENNVVKICDFGLARDIYKDPD-YVRKGDARLPLKWMAPESIFDKVYTTQSDVWSFGVLLWEIFSLGASPYP 277 (337)
T ss_pred CCcceEEEeCCCcEEEeccccchhcccCcc-hhhccCCCCCccccCcHHhcCCCCCccccHHHHHHHHHHHHHcCCCCCC
Confidence 334467776667778899999988754321 12222 235678999999999999999999999999999998 999986
Q ss_pred CCchhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhcCc
Q 038019 718 KSLDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLAGDI 788 (866)
Q Consensus 718 ~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~~~~ 788 (866)
.....+ .+ ......+.. +.. +......+.+++.+|++.+|++||++.||+++|+..+
T Consensus 278 ~~~~~~--~~----~~~~~~~~~-----~~~---~~~~~~~~~~l~~~cl~~~p~~RPs~~ell~~l~~~~ 334 (337)
T cd05054 278 GVQIDE--EF----CRRLKEGTR-----MRA---PEYATPEIYSIMLDCWHNNPEDRPTFSELVEILGDLL 334 (337)
T ss_pred CCCccH--HH----HHHHhccCC-----CCC---CccCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHH
Confidence 432211 11 111222111 011 1112345677888999999999999999999998644
|
Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor (VEGFR) subfamily; catalytic (c) domain. The VEGFR subfamily consists of VEGFR1 (Flt1), VEGFR2 (Flk1), VEGFR3 (Flt4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to recepto |
| >cd05093 PTKc_TrkB Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase B | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.8e-13 Score=146.02 Aligned_cols=134 Identities=23% Similarity=0.265 Sum_probs=92.9
Q ss_pred CCCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHh-cCCCCCCC
Q 038019 641 SKPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIIS-GRASSDKS 719 (866)
Q Consensus 641 ~~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~t-g~~p~~~~ 719 (866)
...|++..++...++.|||.++.+....+-.+.....++..|+|||+.....++.++|||||||+++||+| |+.|+...
T Consensus 147 kp~Nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~sDiwslG~il~~l~t~g~~p~~~~ 226 (288)
T cd05093 147 ATRNCLVGENLLVKIGDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSLGVVLWEIFTYGKQPWYQL 226 (288)
T ss_pred CcceEEEccCCcEEeccCCccccccCCceeecCCCCCccccccCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCC
Confidence 33467777777788999999987765433222122345778999999998999999999999999999999 89888654
Q ss_pred chhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhcCcC
Q 038019 720 LDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLAGDIE 789 (866)
Q Consensus 720 ~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~~~~~ 789 (866)
...+ ..+. ...+... ..... ....+.++..+|++.+|.+||+|.+|.+.|+....
T Consensus 227 ~~~~---~~~~----i~~~~~~-----~~~~~---~~~~l~~li~~~l~~~p~~Rpt~~~v~~~l~~~~~ 281 (288)
T cd05093 227 SNNE---VIEC----ITQGRVL-----QRPRT---CPKEVYDLMLGCWQREPHMRLNIKEIHSLLQNLAK 281 (288)
T ss_pred CHHH---HHHH----HHcCCcC-----CCCCC---CCHHHHHHHHHHccCChhhCCCHHHHHHHHHHHHH
Confidence 3221 2221 1122111 11111 12346677889999999999999999999986543
|
Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase B (TrkB); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkB is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkB to its ligands, brain-derived neurotrophic factor (BDNF) or neurotrophin 4 (NT4), results in receptor oligomerization and activation of the catalytic domain. TrkB is broadly |
| >cd05051 PTKc_DDR Catalytic domain of the Protein Tyrosine Kinases, Discoidin Domain Receptors | Back alignment and domain information |
|---|
Probab=99.37 E-value=6.8e-13 Score=143.47 Aligned_cols=137 Identities=20% Similarity=0.243 Sum_probs=92.9
Q ss_pred CCCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHh--cCCCCCC
Q 038019 641 SKPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIIS--GRASSDK 718 (866)
Q Consensus 641 ~~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~t--g~~p~~~ 718 (866)
...|++...+...++.|||.++.+....+........++.+|||||+...+.++.++|||||||+++||++ |..|+..
T Consensus 157 kp~Nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~~~~~~~p~~~ 236 (296)
T cd05051 157 ATRNCLVGKNYTIKIADFGMSRNLYSSDYYRVQGRAPLPIRWMAWESVLLGKFTTKSDVWAFGVTLWEILTLCREQPYEH 236 (296)
T ss_pred chhceeecCCCceEEccccceeecccCcceeecCcCCCCceecCHHHhhcCCCCccchhhhhHHHHHHHHhcCCCCCCCC
Confidence 33467777777788999999887765443232233456789999999998899999999999999999998 6667654
Q ss_pred CchhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHh
Q 038019 719 SLDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLA 785 (866)
Q Consensus 719 ~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~ 785 (866)
... .....++...+......... + .+.....++.+++..|++.+|++||+|.||++.|+
T Consensus 237 ~~~---~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~l~~li~~cl~~~p~~Rpt~~el~~~L~ 295 (296)
T cd05051 237 LTD---QQVIENAGHFFRDDGRQIYL-P----RPPNCPKDIYELMLECWRRDEEDRPTFREIHLFLQ 295 (296)
T ss_pred cCh---HHHHHHHHhccccccccccC-C----CccCCCHHHHHHHHHHhccChhcCCCHHHHHHHhc
Confidence 322 22333333322221111111 1 11112245777888999999999999999999986
|
Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR) subfamily; catalytic (c) domain. The DDR subfamily consists of homologs of mammalian DDR1, DDR2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR subfamily members are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linke |
| >KOG0201 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.1e-13 Score=143.87 Aligned_cols=128 Identities=20% Similarity=0.261 Sum_probs=93.7
Q ss_pred cCCCCCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCC
Q 038019 638 GIGSKPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSD 717 (866)
Q Consensus 638 ~~~~~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~ 717 (866)
+.....|++...+...++.|||.+-.+-.-..- .+..+||+-|||||++....|+.|+||||+||..+||.+|.+|+.
T Consensus 135 rDIKaanil~s~~g~vkl~DfgVa~ql~~~~~r--r~tfvGTPfwMAPEVI~~~~Y~~KADIWSLGITaiEla~GePP~s 212 (467)
T KOG0201|consen 135 RDIKAANILLSESGDVKLADFGVAGQLTNTVKR--RKTFVGTPFWMAPEVIKQSGYDTKADIWSLGITAIELAKGEPPHS 212 (467)
T ss_pred ccccccceeEeccCcEEEEecceeeeeechhhc--cccccccccccchhhhccccccchhhhhhhhHHHHHHhcCCCCCc
Confidence 334456788877888999999987666542211 145689999999999998899999999999999999999999987
Q ss_pred CCchhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 718 KSLDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 718 ~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
...++....++ .+-.-|.+.......+.+++. .|+..+|+.||++.++++
T Consensus 213 ~~hPmrvlflI------------pk~~PP~L~~~~S~~~kEFV~---~CL~k~P~~RpsA~~LLK 262 (467)
T KOG0201|consen 213 KLHPMRVLFLI------------PKSAPPRLDGDFSPPFKEFVE---ACLDKNPEFRPSAKELLK 262 (467)
T ss_pred ccCcceEEEec------------cCCCCCccccccCHHHHHHHH---HHhhcCcccCcCHHHHhh
Confidence 65554332221 122345554433444555555 899999999999998763
|
|
| >cd05108 PTKc_EGFR Catalytic domain of the Protein Tyrosine Kinase, Epidermal Growth Factor Receptor | Back alignment and domain information |
|---|
Probab=99.37 E-value=4.5e-13 Score=146.48 Aligned_cols=134 Identities=18% Similarity=0.229 Sum_probs=93.1
Q ss_pred CCCCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHh-cCCCCCC
Q 038019 640 GSKPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIIS-GRASSDK 718 (866)
Q Consensus 640 ~~~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~t-g~~p~~~ 718 (866)
....|++...+...++.|||.++.+..+.......+..++..|+|||+.....++.++|||||||++|||+| |+.|++.
T Consensus 135 lkp~Nill~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~~~~~y~apE~~~~~~~~~~~Di~slGv~l~el~t~g~~p~~~ 214 (316)
T cd05108 135 LAARNVLVKTPQHVKITDFGLAKLLGADEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDG 214 (316)
T ss_pred cchhheEecCCCcEEEccccccccccCCCcceeccCCccceeecChHHhccCCCCchhhhHHHHHHHHHHHcCCCCCCCC
Confidence 334467776667788999999998865432222223345678999999999999999999999999999998 9999875
Q ss_pred CchhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhcCc
Q 038019 719 SLDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLAGDI 788 (866)
Q Consensus 719 ~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~~~~ 788 (866)
....+ +. .....+.. .-.+ ......+.+++..||+.+|++||+|.+|+..|....
T Consensus 215 ~~~~~---~~----~~~~~~~~--~~~~------~~~~~~~~~li~~cl~~~p~~Rps~~~l~~~l~~~~ 269 (316)
T cd05108 215 IPASE---IS----SILEKGER--LPQP------PICTIDVYMIMVKCWMIDADSRPKFRELIIEFSKMA 269 (316)
T ss_pred CCHHH---HH----HHHhCCCC--CCCC------CCCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHH
Confidence 43221 11 11111111 0001 112234667788999999999999999999988553
|
Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EGFR (HER1, ErbB1) is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphor |
| >cd05062 PTKc_IGF-1R Catalytic domain of the Protein Tyrosine Kinase, Insulin-like Growth Factor-1 Receptor | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.9e-13 Score=144.96 Aligned_cols=129 Identities=20% Similarity=0.283 Sum_probs=89.3
Q ss_pred CCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHh-cCCCCCCCc
Q 038019 642 KPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIIS-GRASSDKSL 720 (866)
Q Consensus 642 ~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~t-g~~p~~~~~ 720 (866)
..|++..++...++.|||.++.+..+.+........++..|||||+...+.++.++|||||||+++||++ |+.|+....
T Consensus 147 p~Nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~~~~p~~~~~ 226 (277)
T cd05062 147 ARNCMVAEDFTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGMS 226 (277)
T ss_pred hheEEEcCCCCEEECCCCCccccCCcceeecCCCCccCHhhcChhHhhcCCcCchhHHHHHHHHHHHHHcCCCCCCCCCC
Confidence 3467777777788999999887765433211111245778999999998999999999999999999999 688876543
Q ss_pred hhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHh
Q 038019 721 DMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLA 785 (866)
Q Consensus 721 ~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~ 785 (866)
..+ ..+++. .+... .. +......+.+++.+|++.+|++||++.|++++|+
T Consensus 227 ~~~---~~~~~~----~~~~~-----~~---~~~~~~~~~~li~~~l~~~p~~Rps~~e~l~~l~ 276 (277)
T cd05062 227 NEQ---VLRFVM----EGGLL-----DK---PDNCPDMLFELMRMCWQYNPKMRPSFLEIISSIK 276 (277)
T ss_pred HHH---HHHHHH----cCCcC-----CC---CCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHhh
Confidence 221 222211 11111 11 1112234566778999999999999999999986
|
Protein Tyrosine Kinase (PTK) family; Insulin-like Growth Factor-1 Receptor (IGF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. IGF-1R is a receptor tyr kinases (RTK) that is composed of two alphabeta heterodimers. Binding of the ligand (IGF-1 or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, which stimulates downstream kinase activities and biological function. IGF-1R signaling is important in the differentiation, growth, and survival of normal cells. In cancer cells, wh |
| >KOG1024 consensus Receptor-like protein tyrosine kinase RYK/derailed [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.37 E-value=3e-13 Score=140.02 Aligned_cols=129 Identities=21% Similarity=0.230 Sum_probs=89.9
Q ss_pred CcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHh-cCCCCCCCch
Q 038019 643 PNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIIS-GRASSDKSLD 721 (866)
Q Consensus 643 ~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~t-g~~p~~~~~~ 721 (866)
.|...++.++.++.|-.+++-+=-+.|...=...-....||+||-+....++..+|||||||+||||.| |+.|+....+
T Consensus 425 RNCvIdd~LqVkltDsaLSRDLFP~DYhcLGDnEnRPvkWMslEal~n~~yssasDvWsfGVllWELmtlg~~PyaeIDP 504 (563)
T KOG1024|consen 425 RNCVIDDQLQVKLTDSALSRDLFPGDYHCLGDNENRPVKWMSLEALQNSHYSSASDVWSFGVLLWELMTLGKLPYAEIDP 504 (563)
T ss_pred hcceehhheeEEeccchhccccCcccccccCCCCCCcccccCHHHHhhhhhcchhhhHHHHHHHHHHHhcCCCCccccCH
Confidence 355666667777777655554433332111111123468999999999999999999999999999998 9999876655
Q ss_pred hhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhc
Q 038019 722 MEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLAG 786 (866)
Q Consensus 722 ~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~~ 786 (866)
.+.. ..+++|. ++ ..+-.+..++..++.-||+..|++||+++|++.-|.+
T Consensus 505 fEm~-------~ylkdGy-------Rl-aQP~NCPDeLf~vMacCWallpeeRPsf~Qlv~cLse 554 (563)
T KOG1024|consen 505 FEME-------HYLKDGY-------RL-AQPFNCPDELFTVMACCWALLPEERPSFSQLVICLSE 554 (563)
T ss_pred HHHH-------HHHhccc-------ee-cCCCCCcHHHHHHHHHHHhcCcccCCCHHHHHHHHHH
Confidence 4432 2223331 11 1233456678888889999999999999999998863
|
|
| >cd05090 PTKc_Ror1 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 1 | Back alignment and domain information |
|---|
Probab=99.36 E-value=6.5e-13 Score=142.67 Aligned_cols=130 Identities=24% Similarity=0.315 Sum_probs=91.2
Q ss_pred CCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHh-cCCCCCCCc
Q 038019 642 KPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIIS-GRASSDKSL 720 (866)
Q Consensus 642 ~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~t-g~~p~~~~~ 720 (866)
..|++..++...++.|||.++.+..+.+...-....++..|+|||+..++.++.++|||||||+++||+| |+.|+....
T Consensus 152 p~nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~~g~~p~~~~~ 231 (283)
T cd05090 152 ARNILIGEQLHVKISDLGLSREIYSADYYRVQPKSLLPIRWMPPEAIMYGKFSSDSDIWSFGVVLWEIFSFGLQPYYGFS 231 (283)
T ss_pred cceEEEcCCCcEEeccccccccccCCcceecccCCCccceecChHHhccCCCCchhhhHHHHHHHHHHHcCCCCCCCCCC
Confidence 3467777777788999999988765544333334456778999999988899999999999999999999 888886433
Q ss_pred hhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhc
Q 038019 721 DMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLAG 786 (866)
Q Consensus 721 ~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~~ 786 (866)
.. .+.+.+ ..+... ...+ ....++.+++..|++.+|++||+|.+|.++|.+
T Consensus 232 ~~---~~~~~~----~~~~~~-----~~~~---~~~~~~~~li~~cl~~~p~~Rp~~~~i~~~l~~ 282 (283)
T cd05090 232 NQ---EVIEMV----RKRQLL-----PCSE---DCPPRMYSLMTECWQEGPSRRPRFKDIHTRLRS 282 (283)
T ss_pred HH---HHHHHH----HcCCcC-----CCCC---CCCHHHHHHHHHHcccCcccCcCHHHHHHHhhc
Confidence 21 122222 111111 1111 112345556679999999999999999999864
|
Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 1 (Ror1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly |
| >cd05114 PTKc_Tec_Rlk Catalytic domain of the Protein Tyrosine Kinases, Tyrosine kinase expressed in hepatocellular carcinoma and Resting lymphocyte kinase | Back alignment and domain information |
|---|
Probab=99.36 E-value=6e-13 Score=140.64 Aligned_cols=128 Identities=20% Similarity=0.290 Sum_probs=88.8
Q ss_pred CCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHh-cCCCCCCCc
Q 038019 642 KPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIIS-GRASSDKSL 720 (866)
Q Consensus 642 ~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~t-g~~p~~~~~ 720 (866)
..|++..++...++.|||.++.+....+. ...+..++..|+|||+.....++.++||||||++++||+| |+.|+....
T Consensus 128 p~ni~i~~~~~~kl~d~g~~~~~~~~~~~-~~~~~~~~~~y~aPE~~~~~~~~~~~Di~s~G~~l~el~~~g~~p~~~~~ 206 (256)
T cd05114 128 ARNCLVSSTGVVKVSDFGMTRYVLDDEYT-SSSGAKFPVKWSPPEVFNFSKYSSKSDVWSFGVLMWEVFTEGKMPFEKKS 206 (256)
T ss_pred cceEEEcCCCeEEECCCCCccccCCCcee-ccCCCCCchhhCChhhcccCccchhhhhHHHHHHHHHHHcCCCCCCCCCC
Confidence 34666666667788999988876543321 1123345678999999998899999999999999999999 899986543
Q ss_pred hhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHh
Q 038019 721 DMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLA 785 (866)
Q Consensus 721 ~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~ 785 (866)
.. ....++.. +. ....|.. ....+.+++.+||+.+|++||+|.++++.|.
T Consensus 207 ~~---~~~~~i~~----~~--~~~~~~~------~~~~~~~li~~c~~~~p~~Rps~~~l~~~l~ 256 (256)
T cd05114 207 NY---EVVEMISR----GF--RLYRPKL------ASMTVYEVMYSCWHEKPEGRPTFAELLRAIT 256 (256)
T ss_pred HH---HHHHHHHC----CC--CCCCCCC------CCHHHHHHHHHHccCCcccCcCHHHHHHhhC
Confidence 22 22322221 11 1111211 1234677888999999999999999999873
|
Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) and Resting lymphocyte kinase (Rlk); catalytic (c) domain. The PTKc family is part of a larger superfamily, that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec and Rlk (also named Txk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin h |
| >cd05035 PTKc_Axl_like Catalytic Domain of Axl-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Probab=99.36 E-value=5.7e-13 Score=142.11 Aligned_cols=130 Identities=18% Similarity=0.267 Sum_probs=90.1
Q ss_pred CcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHh-cCCCCCCCch
Q 038019 643 PNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIIS-GRASSDKSLD 721 (866)
Q Consensus 643 ~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~t-g~~p~~~~~~ 721 (866)
.|++..++...++.|||.++.+..+.+........++..|+|||+.....++.++||||||++++||++ |+.|+.....
T Consensus 142 ~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~Dv~SlG~il~el~~~g~~p~~~~~~ 221 (273)
T cd05035 142 RNCMLREDMTVCVADFGLSKKIYSGDYYRQGRIAKMPVKWIAIESLADRVYTSKSDVWAFGVTMWEIATRGQTPYPGVEN 221 (273)
T ss_pred heEEECCCCeEEECCccceeeccccccccccccccCCccccCHhhcccCCCCcccchHHHHHHHHHHHhCCCCCCCCCCH
Confidence 466666666778999999887755433211111235678999999988899999999999999999999 8888865332
Q ss_pred hhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhcC
Q 038019 722 MEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLAGD 787 (866)
Q Consensus 722 ~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~~~ 787 (866)
. .+.+++.. +.. +.. +......+.+++.+|++.+|++||+|.||++.|+..
T Consensus 222 ~---~~~~~~~~----~~~-----~~~---~~~~~~~~~~li~~~l~~~p~~Rp~~~e~~~~l~~~ 272 (273)
T cd05035 222 H---EIYDYLRH----GNR-----LKQ---PEDCLDELYDLMYSCWRADPKDRPTFTKLREVLENI 272 (273)
T ss_pred H---HHHHHHHc----CCC-----CCC---CcCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHhh
Confidence 2 22222221 111 111 112234567777799999999999999999999753
|
Protein Tyrosine Kinase (PTK) family; Axl subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The Axl subfamily consists of Axl, Tyro3 (or Sky), Mer (or Mertk), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl subfamily members are implicated in a variety of cellu |
| >cd05104 PTKc_Kit Catalytic domain of the Protein Tyrosine Kinase, Kit | Back alignment and domain information |
|---|
Probab=99.36 E-value=6.8e-13 Score=148.49 Aligned_cols=130 Identities=18% Similarity=0.268 Sum_probs=89.1
Q ss_pred CCcccCHHHHHHHhcCCccccccCCCCceeEEEe-ecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHh-cCCCCCCC
Q 038019 642 KPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKV-TANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIIS-GRASSDKS 719 (866)
Q Consensus 642 ~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~-~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~t-g~~p~~~~ 719 (866)
..|++...+...++.|||.++.+....... ..+ ..++..|+|||+.....++.++|||||||+++||+| |+.|+...
T Consensus 242 p~Nill~~~~~~kl~DfG~a~~~~~~~~~~-~~~~~~~~~~y~aPE~~~~~~~~~~sDi~slG~~l~ellt~g~~p~~~~ 320 (375)
T cd05104 242 ARNILLTHGRITKICDFGLARDIRNDSNYV-VKGNARLPVKWMAPESIFNCVYTFESDVWSYGILLWEIFSLGSSPYPGM 320 (375)
T ss_pred hhhEEEECCCcEEEecCccceeccCccccc-ccCCCCCCcceeChhHhcCCCCCCCCCHHHHHHHHHHHHhcCCCCCCCC
Confidence 346666666667789999998776543211 222 235678999999999999999999999999999998 88888654
Q ss_pred chhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhc
Q 038019 720 LDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLAG 786 (866)
Q Consensus 720 ~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~~ 786 (866)
.... ....++ ..+.. ...| .... .++.+++..|++.+|++||+|.||+++|+.
T Consensus 321 ~~~~--~~~~~~----~~~~~--~~~~---~~~~---~~l~~li~~cl~~dP~~RPs~~eil~~l~~ 373 (375)
T cd05104 321 PVDS--KFYKMI----KEGYR--MLSP---ECAP---SEMYDIMKSCWDADPLKRPTFKQIVQLIEQ 373 (375)
T ss_pred CchH--HHHHHH----HhCcc--CCCC---CCCC---HHHHHHHHHHccCChhHCcCHHHHHHHHHh
Confidence 3221 122222 11110 0011 1112 345567779999999999999999999985
|
Protein Tyrosine Kinase (PTK) family; Kit (or c-Kit); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Kit is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of Kit to its ligand, the stem-cell factor (SCF), leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem ce |
| >cd05049 PTKc_Trk Catalytic domain of the Protein Tyrosine Kinases, Tropomyosin Related Kinases | Back alignment and domain information |
|---|
Probab=99.36 E-value=4.8e-13 Score=143.38 Aligned_cols=128 Identities=23% Similarity=0.250 Sum_probs=89.5
Q ss_pred CcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHh-cCCCCCCCch
Q 038019 643 PNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIIS-GRASSDKSLD 721 (866)
Q Consensus 643 ~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~t-g~~p~~~~~~ 721 (866)
.|++...+...++.|||.++.+....+...-....+++.|+|||++..+.++.++|||||||+++||++ |+.|+.....
T Consensus 151 ~nili~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~e~~~~g~~p~~~~~~ 230 (280)
T cd05049 151 RNCLVGYDLVVKIGDFGMSRDVYTTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSFGVVLWEIFTYGKQPWYGLSN 230 (280)
T ss_pred ceEEEcCCCeEEECCcccceecccCcceecCCCCcccceecChhhhccCCcchhhhHHHHHHHHHHHHhcCCCCCCCCCH
Confidence 466666777888999998877654332111122345788999999999999999999999999999999 9999864432
Q ss_pred hhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHh
Q 038019 722 MEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLA 785 (866)
Q Consensus 722 ~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~ 785 (866)
.+ .++++. .+..... +......+.++...||+.+|++||++.||+++|+
T Consensus 231 ~~---~~~~~~----~~~~~~~--------~~~~~~~~~~li~~~l~~~p~~Rp~~~eil~~l~ 279 (280)
T cd05049 231 EE---VIECIT----QGRLLQR--------PRTCPSEVYDIMLGCWKRDPQQRINIKDIHERLQ 279 (280)
T ss_pred HH---HHHHHH----cCCcCCC--------CCCCCHHHHHHHHHHcCCCcccCCCHHHHHHHhh
Confidence 22 222222 2211110 1112234566777999999999999999999986
|
Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase (Trk) subfamily; catalytic (c) domain. The Trk subfamily consists of TrkA, TrkB, TrkC, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Trk subfamily members are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, the nerve growth factor (NGF) family of neutrotrophins, leads to Trk receptor oligomerization and activation of the catalyt |
| >KOG1094 consensus Discoidin domain receptor DDR1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.35 E-value=5.9e-13 Score=144.27 Aligned_cols=137 Identities=21% Similarity=0.246 Sum_probs=103.9
Q ss_pred CcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHh--cCCCCCCCc
Q 038019 643 PNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIIS--GRASSDKSL 720 (866)
Q Consensus 643 ~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~t--g~~p~~~~~ 720 (866)
.|.+.+.+...|+.|||.++-+=.|.|-+|--..+-.++|||+|.+.-+++|++||||+|||.+||+++ ..+|+....
T Consensus 666 rNcLv~~e~~iKiadfgmsR~lysg~yy~vqgr~vlpiRwmawEsillgkFttaSDvWafgvTlwE~~~~C~e~Py~~lt 745 (807)
T KOG1094|consen 666 RNCLVDGEFTIKIADFGMSRNLYSGDYYRVQGRAVLPIRWMAWESILLGKFTTASDVWAFGVTLWEVFMLCREQPYSQLT 745 (807)
T ss_pred cceeecCcccEEecCcccccccccCCceeeecceeeeeeehhHHHHHhccccchhhhhhhHHHHHHHHHHHhhCchhhhh
Confidence 477889999999999999999988877665544456789999999999999999999999999999775 788887544
Q ss_pred hhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhcC
Q 038019 721 DMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLAGD 787 (866)
Q Consensus 721 ~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~~~ 787 (866)
++ ..++-...+.+.+... ++ ...+..+...+.++++.||..+-++||+++++...|...
T Consensus 746 ~e---~vven~~~~~~~~~~~-~~----l~~P~~cp~~lyelml~Cw~~es~~RPsFe~lh~~lq~~ 804 (807)
T KOG1094|consen 746 DE---QVVENAGEFFRDQGRQ-VV----LSRPPACPQGLYELMLRCWRRESEQRPSFEQLHLFLQED 804 (807)
T ss_pred HH---HHHHhhhhhcCCCCcc-ee----ccCCCcCcHHHHHHHHHHhchhhhcCCCHHHHHHHHHHh
Confidence 32 2344444433332211 11 122334556778999999999999999999999988743
|
|
| >PTZ00267 NIMA-related protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=4.2e-13 Score=154.92 Aligned_cols=131 Identities=20% Similarity=0.197 Sum_probs=90.1
Q ss_pred ccCCCCCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCC
Q 038019 637 VGIGSKPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASS 716 (866)
Q Consensus 637 ~~~~~~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~ 716 (866)
++.....|++...+...++.|||.++.+.......+.....||++|||||++....++.++|||||||+++||+||+.|+
T Consensus 192 HrDlkp~NIll~~~~~~kL~DFgla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~Pf 271 (478)
T PTZ00267 192 HRDLKSANIFLMPTGIIKLGDFGFSKQYSDSVSLDVASSFCGTPYYLAPELWERKRYSKKADMWSLGVILYELLTLHRPF 271 (478)
T ss_pred ECCcCHHhEEECCCCcEEEEeCcCceecCCccccccccccCCCccccCHhHhCCCCCCcHHhHHHHHHHHHHHHhCCCCC
Confidence 33333347777777778899999998876543222334456999999999999999999999999999999999999998
Q ss_pred CCCchhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 717 DKSLDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 717 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
......+ +...+ . .+. .++..... ...+.+++..|++.+|++||++.+++.
T Consensus 272 ~~~~~~~---~~~~~---~-~~~----~~~~~~~~----s~~~~~li~~~L~~dP~~Rps~~~~l~ 322 (478)
T PTZ00267 272 KGPSQRE---IMQQV---L-YGK----YDPFPCPV----SSGMKALLDPLLSKNPALRPTTQQLLH 322 (478)
T ss_pred CCCCHHH---HHHHH---H-hCC----CCCCCccC----CHHHHHHHHHHhccChhhCcCHHHHHh
Confidence 7533211 11111 1 111 11111111 123555667999999999999999864
|
|
| >cd05043 PTK_Ryk Pseudokinase domain of Ryk (Receptor related to tyrosine kinase) | Back alignment and domain information |
|---|
Probab=99.34 E-value=8.7e-13 Score=141.44 Aligned_cols=130 Identities=19% Similarity=0.186 Sum_probs=93.0
Q ss_pred CcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHh-cCCCCCCCch
Q 038019 643 PNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIIS-GRASSDKSLD 721 (866)
Q Consensus 643 ~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~t-g~~p~~~~~~ 721 (866)
.|++..++...++.|||.++.+..+.+..+.....++..|+|||+.....++.++|||||||+++|+++ |+.|+.....
T Consensus 146 ~nil~~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~y~apE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~ 225 (280)
T cd05043 146 RNCVIDEELQVKITDNALSRDLFPMDYHCLGDNENRPVKWMALESLVNKEYSSASDVWSFGVLLWELMTLGQTPYVEIDP 225 (280)
T ss_pred hhEEEcCCCcEEECCCCCcccccCCceEEeCCCCCcchhccCHHHHhcCCCCchhhHHHhHHHHHHHhcCCCCCcCcCCH
Confidence 356666666778899999987765554444444567788999999988889999999999999999999 9999875432
Q ss_pred hhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhcC
Q 038019 722 MEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLAGD 787 (866)
Q Consensus 722 ~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~~~ 787 (866)
. .+..+... +. .+... ......+.+++.+||+.+|++||++.+|+++|+..
T Consensus 226 ~---~~~~~~~~----~~-----~~~~~---~~~~~~~~~li~~~l~~~p~~Rps~~~~~~~l~~~ 276 (280)
T cd05043 226 F---EMAAYLKD----GY-----RLAQP---INCPDELFAVMACCWALDPEERPSFSQLVQCLTDF 276 (280)
T ss_pred H---HHHHHHHc----CC-----CCCCC---CcCCHHHHHHHHHHcCCChhhCCCHHHHHHHHHHH
Confidence 2 23332221 10 00010 11123456777899999999999999999999854
|
Protein Tyrosine Kinase (PTK) family; Receptor related to tyrosine kinase (Ryk); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ryk is a receptor tyr kinase (RTK) containing an extracellular region with two leucine-rich motifs, a transmembrane segment, and an intracellular inactive pseudokinase domain. The extracellular region of Ryk shows homology to the N-terminal domain of Wnt inhibitory factor-1 (WIF) and serves as the ligand (Wnt) binding domain of Ryk. Ryk is expressed in many different tissues both during development and in adults, suggesting a widespread function. It |
| >cd05053 PTKc_FGFR Catalytic domain of the Protein Tyrosine Kinases, Fibroblast Growth Factor Receptors | Back alignment and domain information |
|---|
Probab=99.34 E-value=3.5e-13 Score=145.55 Aligned_cols=133 Identities=20% Similarity=0.242 Sum_probs=92.8
Q ss_pred CCCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHh-cCCCCCCC
Q 038019 641 SKPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIIS-GRASSDKS 719 (866)
Q Consensus 641 ~~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~t-g~~p~~~~ 719 (866)
...|++...+...++.|||.++.+....+-.......++..|+|||+.....++.++|||||||++||+++ |..|+...
T Consensus 159 kp~Nil~~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~ 238 (293)
T cd05053 159 AARNVLVTEDHVMKIADFGLARDIHHIDYYRKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLLWEIFTLGGSPYPGI 238 (293)
T ss_pred ceeeEEEcCCCeEEeCccccccccccccceeccCCCCCCccccCHHHhccCCcCcccceeehhhHHHHHhcCCCCCCCCC
Confidence 33467777777788999999988765443222222235678999999988999999999999999999998 88887643
Q ss_pred chhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhcCc
Q 038019 720 LDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLAGDI 788 (866)
Q Consensus 720 ~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~~~~ 788 (866)
...+ +. .....+... ..+......+.+++.+|++.+|++||||.||++.|+..+
T Consensus 239 ~~~~---~~----~~~~~~~~~--------~~~~~~~~~~~~li~~~l~~~p~~Rps~~eil~~l~~~~ 292 (293)
T cd05053 239 PVEE---LF----KLLKEGYRM--------EKPQNCTQELYHLMRDCWHEVPSQRPTFKQLVEDLDRML 292 (293)
T ss_pred CHHH---HH----HHHHcCCcC--------CCCCCCCHHHHHHHHHHcccCcccCcCHHHHHHHHHHhh
Confidence 3221 11 111111110 111122345667888999999999999999999998653
|
Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor (FGFR) subfamily; catalytic (c) domain. The FGFR subfamily consists of FGFR1, FGFR2, FGFR3, FGFR4, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K).PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, and to heparin/heparan sulfate (HS) results in the formation of a ternary complex, which leads to receptor dimerization and activation, |
| >cd05032 PTKc_InsR_like Catalytic domain of Insulin Receptor-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Probab=99.34 E-value=6.5e-13 Score=142.11 Aligned_cols=129 Identities=25% Similarity=0.347 Sum_probs=90.7
Q ss_pred CCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHh-cCCCCCCCc
Q 038019 642 KPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIIS-GRASSDKSL 720 (866)
Q Consensus 642 ~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~t-g~~p~~~~~ 720 (866)
..|++..++...++.|||.++.+....+........++.+|+|||....+.++.++|||||||+++|++| |+.|+....
T Consensus 147 p~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~ 226 (277)
T cd05032 147 ARNCMVAEDLTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMAPESLKDGVFTTKSDVWSFGVVLWEMATLAEQPYQGLS 226 (277)
T ss_pred hheEEEcCCCCEEECCcccchhhccCcccccCCCCCccccccCHHHHhcCCCCcccchHHHHHHHHHhhccCCCCCccCC
Confidence 3466777777778899999887765443222222346789999999998999999999999999999999 888886433
Q ss_pred hhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHh
Q 038019 721 DMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLA 785 (866)
Q Consensus 721 ~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~ 785 (866)
..+ ..++.. .+... .... .....+.+++..|++.+|++|||+.++++.|+
T Consensus 227 ~~~---~~~~~~----~~~~~-----~~~~---~~~~~~~~li~~~l~~~p~~Rpt~~~l~~~l~ 276 (277)
T cd05032 227 NEE---VLKFVI----DGGHL-----DLPE---NCPDKLLELMRMCWQYNPKMRPTFLEIVSSLK 276 (277)
T ss_pred HHH---HHHHHh----cCCCC-----CCCC---CCCHHHHHHHHHHcCCChhhCCCHHHHHHHhc
Confidence 222 222221 11111 1111 11345667778999999999999999999986
|
Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The InsR subfamily is composed of InsR, Insulin-like Growth Factor-1 Receptor (IGF-1R), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR and IGF-1R are receptor tyr kinases (RTKs) composed of two alphabeta heterodimers. Binding of the ligand (insulin, IGF-1, or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological |
| >cd05097 PTKc_DDR_like Catalytic domain of Discoidin Domain Receptor-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.4e-12 Score=141.08 Aligned_cols=134 Identities=19% Similarity=0.237 Sum_probs=88.3
Q ss_pred CcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHh--cCCCCCCCc
Q 038019 643 PNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIIS--GRASSDKSL 720 (866)
Q Consensus 643 ~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~t--g~~p~~~~~ 720 (866)
.|++..++...++.|||.++.+..+..........++..|+|||+...+.++.++|||||||+++||+| |..|+....
T Consensus 158 ~Nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwSlG~~l~el~~~~~~~p~~~~~ 237 (295)
T cd05097 158 RNCLVGNHYTIKIADFGMSRNLYSGDYYRIQGRAVLPIRWMAWESILLGKFTTASDVWAFGVTLWEMFTLCKEQPYSLLS 237 (295)
T ss_pred hhEEEcCCCcEEecccccccccccCcceeccCcCcCceeecChhhhccCCcCchhhHHHHHHHHHHHHHcCCCCCCcccC
Confidence 366666666788999999887654432221122345678999999999999999999999999999998 455665433
Q ss_pred hhhhhcHHHHHHHHhhcC-CcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHh
Q 038019 721 DMEKIYLLEWAWNLHENN-QSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLA 785 (866)
Q Consensus 721 ~~~~~~l~~~~~~~~~~~-~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~ 785 (866)
..+ ....+....... .......+ ......+.+++.+|++.+|++||+|.+|++.|+
T Consensus 238 ~~~---~~~~~~~~~~~~~~~~~~~~~------~~~~~~l~~li~~~l~~~p~~RPs~~~i~~~l~ 294 (295)
T cd05097 238 DEQ---VIENTGEFFRNQGRQIYLSQT------PLCPSPVFKLMMRCWSRDIKDRPTFNKIHHFLR 294 (295)
T ss_pred hHH---HHHHHHHhhhhccccccCCCC------CCCCHHHHHHHHHHcCCCchhCcCHHHHHHHHh
Confidence 221 222222222111 11001111 111246777888999999999999999999986
|
Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR)-like proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR-like proteins are members of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including |
| >cd05092 PTKc_TrkA Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase A | Back alignment and domain information |
|---|
Probab=99.34 E-value=9e-13 Score=141.39 Aligned_cols=128 Identities=23% Similarity=0.286 Sum_probs=86.8
Q ss_pred CcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHh-cCCCCCCCch
Q 038019 643 PNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIIS-GRASSDKSLD 721 (866)
Q Consensus 643 ~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~t-g~~p~~~~~~ 721 (866)
.|++..++...++.|||.++.+....+..+.....+++.|+|||+.....++.++|||||||+++||++ |+.|+.....
T Consensus 151 ~nil~~~~~~~kL~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~ 230 (280)
T cd05092 151 RNCLVGQGLVVKIGDFGMSRDIYSTDYYRVGGRTMLPIRWMPPESILYRKFTTESDIWSFGVVLWEIFTYGKQPWYQLSN 230 (280)
T ss_pred hhEEEcCCCCEEECCCCceeEcCCCceeecCCCccccccccCHHHhccCCcCchhhHHHHHHHHHHHHcCCCCCCccCCH
Confidence 366666666778899998876654332222222345678999999999999999999999999999999 8988864433
Q ss_pred hhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHh
Q 038019 722 MEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLA 785 (866)
Q Consensus 722 ~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~ 785 (866)
.+. .... ..+.... .+ ... ...+.+++.+||+.+|.+||++.||.+.|+
T Consensus 231 ~~~---~~~~----~~~~~~~--~~--~~~----~~~~~~li~~cl~~~P~~Rp~~~~l~~~l~ 279 (280)
T cd05092 231 TEA---IECI----TQGRELE--RP--RTC----PPEVYAIMQGCWQREPQQRMVIKDIHSRLQ 279 (280)
T ss_pred HHH---HHHH----HcCccCC--CC--CCC----CHHHHHHHHHHccCChhhCCCHHHHHHHHh
Confidence 221 1111 1111000 01 111 223556677999999999999999999986
|
Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase A (TrkA); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkA is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkA to its ligand, nerve growth factor (NGF), results in receptor oligomerization and activation of the catalytic domain. TrkA is expressed mainly in neural-crest-derived sensory |
| >cd05050 PTKc_Musk Catalytic domain of the Protein Tyrosine Kinase, Muscle-specific kinase | Back alignment and domain information |
|---|
Probab=99.34 E-value=8.1e-13 Score=142.36 Aligned_cols=128 Identities=21% Similarity=0.294 Sum_probs=88.2
Q ss_pred CcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHh-cCCCCCCCch
Q 038019 643 PNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIIS-GRASSDKSLD 721 (866)
Q Consensus 643 ~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~t-g~~p~~~~~~ 721 (866)
.|++..++...++.|||.++.+....+-........+..|+|||+...+.++.|+|||||||+++||++ |..|+.....
T Consensus 159 ~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~~~~~p~~~~~~ 238 (288)
T cd05050 159 RNCLVGENMVVKIADFGLSRNIYSADYYKASENDAIPIRWMPPESIFYNRYTTESDVWAYGVVLWEIFSYGMQPYYGMAH 238 (288)
T ss_pred hheEecCCCceEECccccceecccCccccccCCCccChhhcCHHHHhcCCCCchhHHHHHHHHHHHHHhCCCCCCCCCCH
Confidence 366666667778899998887654432111122235678999999988999999999999999999998 8888764332
Q ss_pred hhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHh
Q 038019 722 MEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLA 785 (866)
Q Consensus 722 ~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~ 785 (866)
.+ +.. ....+.... .+.....++.+++.+|++.+|++||+|.||++.|+
T Consensus 239 ~~------~~~-~~~~~~~~~--------~~~~~~~~l~~li~~~l~~~p~~Rpt~~el~~~l~ 287 (288)
T cd05050 239 EE------VIY-YVRDGNVLS--------CPDNCPLELYNLMRLCWSKLPSDRPSFASINRILQ 287 (288)
T ss_pred HH------HHH-HHhcCCCCC--------CCCCCCHHHHHHHHHHcccCcccCCCHHHHHHHhh
Confidence 21 111 122222111 11112345667888999999999999999999987
|
Protein Tyrosine Kinase (PTK) family; Muscle-specific kinase (Musk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Musk is a receptor tyr kinase (RTK) containing an extracellular region with four immunoglobulin-like domains and a cysteine-rich cluster, a transmembrane segment, and an intracellular catalytic domain. Musk is expressed and concentrated in the postsynaptic membrane in skeletal muscle. It is essential for the establishment of the neuromuscular junction (NMJ), a peripheral synapse that conveys signals from motor neurons to muscle cells. Agrin, a large proteoglycan released from motor neurons, stimulates M |
| >KOG0575 consensus Polo-like serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.2e-12 Score=143.85 Aligned_cols=130 Identities=21% Similarity=0.276 Sum_probs=93.4
Q ss_pred hhccCCCCCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCC
Q 038019 635 VLVGIGSKPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRA 714 (866)
Q Consensus 635 ~~~~~~~~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~ 714 (866)
++|++-.-.|+|..+++..|+.|||++-.+-..+ .--+..+||+-|+|||++.....+..+||||.|||+|-|++|++
T Consensus 139 IiHRDLKLGNlfL~~~~~VKIgDFGLAt~le~~~--Erk~TlCGTPNYIAPEVl~k~gHsfEvDiWSlGcvmYtLL~G~P 216 (592)
T KOG0575|consen 139 IIHRDLKLGNLFLNENMNVKIGDFGLATQLEYDG--ERKKTLCGTPNYIAPEVLNKSGHSFEVDIWSLGCVMYTLLVGRP 216 (592)
T ss_pred ceecccchhheeecCcCcEEecccceeeeecCcc--cccceecCCCcccChhHhccCCCCCchhhhhhhhHHHhhhhCCC
Confidence 3333333358999999999999999998886443 23345689999999999999999999999999999999999999
Q ss_pred CCCCCchhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 715 SSDKSLDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 715 p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
||+...-.+ ....++. .+..-|. .-..++..++. .-++.+|.+|||..+|+.
T Consensus 217 PFetk~vke-------ty~~Ik~---~~Y~~P~---~ls~~A~dLI~---~lL~~~P~~Rpsl~~vL~ 268 (592)
T KOG0575|consen 217 PFETKTVKE-------TYNKIKL---NEYSMPS---HLSAEAKDLIR---KLLRPNPSERPSLDEVLD 268 (592)
T ss_pred CcccchHHH-------HHHHHHh---cCccccc---ccCHHHHHHHH---HHhcCCcccCCCHHHHhc
Confidence 998532111 1122211 1222222 12233444443 678999999999999985
|
|
| >KOG0198 consensus MEKK and related serine/threonine protein kinases [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.34 E-value=4.5e-13 Score=141.64 Aligned_cols=131 Identities=19% Similarity=0.285 Sum_probs=90.6
Q ss_pred CCCcccCHH-HHHHHhcCCccccccCC-CCceeEEEeecCCCCccCceeeecCCCC-chhHHHHHHHHHHHHHhcCCCCC
Q 038019 641 SKPNIFGYA-ELRSATKDFNRSNKLGE-GGYGPVYKVTANSYGYLAPEYAMRGHLT-EKADVFSFGVVALEIISGRASSD 717 (866)
Q Consensus 641 ~~~~~~~~~-~~~~~~~dF~~~~~lg~-g~~g~vy~~~~gt~gY~aPE~~~~~~~t-~ksDVySfGvvLlEl~tg~~p~~ 717 (866)
...|++.+. ....++.|||.+..+.. +.....-....||+-|||||++..+... .++||||+||+++||+||++|+.
T Consensus 144 K~~NiLl~~~~~~~KlaDFG~a~~~~~~~~~~~~~~~~~Gtp~~maPEvi~~g~~~~~~sDiWSlGCtVvEM~Tg~~PW~ 223 (313)
T KOG0198|consen 144 KPANILLDPSNGDVKLADFGLAKKLESKGTKSDSELSVQGTPNYMAPEVIRNGEVARRESDIWSLGCTVVEMLTGKPPWS 223 (313)
T ss_pred ccceEEEeCCCCeEEeccCccccccccccccccccccccCCccccCchhhcCCCcCCccchhhhcCCEEEeccCCCCcch
Confidence 345888888 57889999998887763 1111112235799999999999965433 59999999999999999999987
Q ss_pred CCchhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHH
Q 038019 718 KSLDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAML 784 (866)
Q Consensus 718 ~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L 784 (866)
.. ....+|......+. .-|.+++.-.+++..++. .|.+.+|++|||+.+.+..-
T Consensus 224 ~~-----~~~~~~~~~ig~~~-----~~P~ip~~ls~~a~~Fl~---~C~~~~p~~Rpta~eLL~hp 277 (313)
T KOG0198|consen 224 EF-----FEEAEALLLIGRED-----SLPEIPDSLSDEAKDFLR---KCFKRDPEKRPTAEELLEHP 277 (313)
T ss_pred hh-----cchHHHHHHHhccC-----CCCCCCcccCHHHHHHHH---HHhhcCcccCcCHHHHhhCh
Confidence 42 12233333322222 123444444456666665 89999999999999987643
|
|
| >KOG0200 consensus Fibroblast/platelet-derived growth factor receptor and related receptor tyrosine kinases [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.34 E-value=5.8e-13 Score=156.98 Aligned_cols=130 Identities=22% Similarity=0.282 Sum_probs=94.6
Q ss_pred CcccCHHHHHHHhcCCccccccCCCCceeEEEeecC--CCCccCceeeecCCCCchhHHHHHHHHHHHHHh-cCCCCCCC
Q 038019 643 PNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTAN--SYGYLAPEYAMRGHLTEKADVFSFGVVALEIIS-GRASSDKS 719 (866)
Q Consensus 643 ~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~g--t~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~t-g~~p~~~~ 719 (866)
-|++..+.-..++.|||+++.+-...+..+- +..| .+.|||||.+....+|.|+|||||||+||||+| |..|+...
T Consensus 447 RNVLi~~~~~~kIaDFGlar~~~~~~~y~~~-~~~~~LP~kWmApEsl~~~~ft~kSDVWSfGI~L~EifsLG~~PYp~~ 525 (609)
T KOG0200|consen 447 RNVLITKNKVIKIADFGLARDHYNKDYYRTK-SSAGTLPVKWMAPESLFDRVFTSKSDVWSFGILLWEIFTLGGTPYPGI 525 (609)
T ss_pred hhEEecCCCEEEEccccceeccCCCCceEec-CCCCccceeecCHHHhccCcccccchhhHHHHHHHHHhhCCCCCCCCC
Confidence 4777777778889999999987665553322 2222 356999999999999999999999999999999 88888643
Q ss_pred chhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhcC
Q 038019 720 LDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLAGD 787 (866)
Q Consensus 720 ~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~~~ 787 (866)
... ..+.+ .+++|... +.+..+..++..++..||+.+|++||++.+.++.++..
T Consensus 526 ~~~--~~l~~----~l~~G~r~--------~~P~~c~~eiY~iM~~CW~~~p~~RP~F~~~~~~~~~~ 579 (609)
T KOG0200|consen 526 PPT--EELLE----FLKEGNRM--------EQPEHCSDEIYDLMKSCWNADPEDRPTFSECVEFFEKH 579 (609)
T ss_pred CcH--HHHHH----HHhcCCCC--------CCCCCCCHHHHHHHHHHhCCCcccCCCHHHHHHHHHHH
Confidence 211 12333 33333221 12233445666788899999999999999999999863
|
|
| >cd05045 PTKc_RET Catalytic domain of the Protein Tyrosine Kinase, REarranged during Transfection protein | Back alignment and domain information |
|---|
Probab=99.33 E-value=6.4e-13 Score=143.33 Aligned_cols=132 Identities=19% Similarity=0.200 Sum_probs=89.6
Q ss_pred CCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHh-cCCCCCCCc
Q 038019 642 KPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIIS-GRASSDKSL 720 (866)
Q Consensus 642 ~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~t-g~~p~~~~~ 720 (866)
..|++..++...++.|||.++.+.......-.....++..|+|||+..+..++.++||||||++++||+| |+.|+....
T Consensus 155 p~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~apE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~ 234 (290)
T cd05045 155 ARNVLVAEGRKMKISDFGLSRDVYEEDSYVKRSKGRIPVKWMAIESLFDHIYTTQSDVWSFGVLLWEIVTLGGNPYPGIA 234 (290)
T ss_pred hheEEEcCCCcEEeccccccccccCccchhcccCCCCCccccCHHHHccCCcchHhHHHHHHHHHHHHHhcCCCCCCCCC
Confidence 3466666666778899999876643221000112245678999999988899999999999999999999 998886543
Q ss_pred hhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhcCc
Q 038019 721 DMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLAGDI 788 (866)
Q Consensus 721 ~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~~~~ 788 (866)
+.+ +.++ ...+. .+.... .....+.+++..|++.+|++||+|.||++.|+..+
T Consensus 235 ~~~---~~~~----~~~~~-----~~~~~~---~~~~~~~~~i~~cl~~~P~~Rp~~~~i~~~l~~~~ 287 (290)
T cd05045 235 PER---LFNL----LKTGY-----RMERPE---NCSEEMYNLMLTCWKQEPDKRPTFADISKELEKMM 287 (290)
T ss_pred HHH---HHHH----HhCCC-----CCCCCC---CCCHHHHHHHHHHccCCcccCCCHHHHHHHHHHHH
Confidence 221 2222 21111 111111 11234667778999999999999999999998654
|
Protein Tyrosine Kinase (PTK) family; RET (REarranged during Transfection) protein; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. RET is a receptor tyr kinase (RTK) containing an extracellular region with four cadherin-like repeats, a calcium-binding site, and a cysteine-rich domain, a transmembrane segment, and an intracellular catalytic domain. It is part of a multisubunit complex that binds glial-derived neurotropic factor (GDNF) family ligands (GFLs) including GDNF, neurturin, artemin, and persephin. GFLs bind RET along with four GPI-anchored coreceptors, bringing two RET molecules together, leadi |
| >cd05033 PTKc_EphR Catalytic domain of Ephrin Receptor Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Probab=99.33 E-value=7.6e-13 Score=140.72 Aligned_cols=132 Identities=23% Similarity=0.249 Sum_probs=91.1
Q ss_pred CCCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHh-cCCCCCCC
Q 038019 641 SKPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIIS-GRASSDKS 719 (866)
Q Consensus 641 ~~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~t-g~~p~~~~ 719 (866)
...|++..++...++.|||.++.+..........+..++..|+|||+.....++.++||||||++++|+++ |+.|+...
T Consensus 133 ~p~nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~~Pe~~~~~~~~~~~Dv~slG~~l~~l~~~g~~p~~~~ 212 (266)
T cd05033 133 AARNILVNSNLVCKVSDFGLSRRLEDSEATYTTKGGKIPIRWTAPEAIAYRKFTSASDVWSFGIVMWEVMSYGERPYWDM 212 (266)
T ss_pred CcceEEEcCCCCEEECccchhhcccccccceeccCCCCCccccChhhhccCCCccccchHHHHHHHHHHHccCCCCCCCC
Confidence 34477777777788999999988852111111112345678999999998999999999999999999998 99998654
Q ss_pred chhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhcC
Q 038019 720 LDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLAGD 787 (866)
Q Consensus 720 ~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~~~ 787 (866)
...+ +.+++. .+. ..+.. ......+.+++.+|++.+|++||+|.||+++|+..
T Consensus 213 ~~~~---~~~~~~----~~~----~~~~~----~~~~~~l~~li~~cl~~~p~~Rp~~~ei~~~l~~~ 265 (266)
T cd05033 213 SNQD---VIKAVE----DGY----RLPPP----MDCPSALYQLMLDCWQKDRNERPTFSQIVSTLDKM 265 (266)
T ss_pred CHHH---HHHHHH----cCC----CCCCC----CCCCHHHHHHHHHHcCCCcccCcCHHHHHHHHHhh
Confidence 3221 222221 111 11111 11223466788899999999999999999999854
|
Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). They can be classified into two classes (EphA and EphB), according to their extracellular sequences, which largely correspond to binding preferences for either GPI-anchored ephrin-A ligands or transmembrane ephrin-B ligands. Vertebrates have ten EphA and six EhpB receptors, which display promiscuous ligand interactions within each class. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment |
| >cd05080 PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2 | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.5e-13 Score=145.94 Aligned_cols=145 Identities=16% Similarity=0.132 Sum_probs=91.4
Q ss_pred CCcccCHHHHHHHhcCCccccccCCCCcee-EEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCCc
Q 038019 642 KPNIFGYAELRSATKDFNRSNKLGEGGYGP-VYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSL 720 (866)
Q Consensus 642 ~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~-vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~ 720 (866)
..|++..++...++.|||.++.+..+.... +.....++..|+|||+...+.++.|+||||||++++||+||+.|+....
T Consensus 135 p~Nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~PE~~~~~~~~~~~Di~slG~~l~el~tg~~p~~~~~ 214 (283)
T cd05080 135 ARNVLLDNDRLVKIGDFGLAKAVPEGHEYYRVREDGDSPVFWYAVECLKENKFSYASDVWSFGVTLYELLTHCDSKQSPP 214 (283)
T ss_pred hheEEEcCCCcEEEeecccccccCCcchhhccCCCCCCCceeeCHhHhcccCCCcccccHHHHHHHHHHHhCCCCCCCCc
Confidence 346777666677889999998876543211 1122235667999999988899999999999999999999999975432
Q ss_pred hhhhhcHHHHHHHHhhcCCcccccCCcc-cccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhcC
Q 038019 721 DMEKIYLLEWAWNLHENNQSFGLVDPTL-TEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLAGD 787 (866)
Q Consensus 721 ~~~~~~l~~~~~~~~~~~~~~~~~d~~l-~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~~~ 787 (866)
.. ......+...........+.++... ...+......+.+++..|++.+|++||+|++|+++|+..
T Consensus 215 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~~i~~~l~~~ 281 (283)
T cd05080 215 KK-FEEMIGPKQGQMTVVRLIELLERGMRLPCPKNCPQEVYILMKNCWETEAKFRPTFRSLIPILKEM 281 (283)
T ss_pred ch-hhhhhcccccccchhhhhhhhhcCCCCCCCCCCCHHHHHHHHHHhccChhhCCCHHHHHHHHHHh
Confidence 11 0111111110000001111111111 011112234566677899999999999999999999853
|
Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of sign |
| >cd05087 PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases 1 and 3 | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.5e-12 Score=137.00 Aligned_cols=132 Identities=22% Similarity=0.263 Sum_probs=86.0
Q ss_pred CcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecC-------CCCchhHHHHHHHHHHHHHh-cCC
Q 038019 643 PNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRG-------HLTEKADVFSFGVVALEIIS-GRA 714 (866)
Q Consensus 643 ~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~-------~~t~ksDVySfGvvLlEl~t-g~~ 714 (866)
.|++...+...++.|||.++......+.....+..++..|+|||+.... .++.++|||||||+++||++ |+.
T Consensus 129 ~nil~~~~~~~kL~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~~l~el~~~g~~ 208 (269)
T cd05087 129 RNCLLTADLTVKIGDYGLSHNKYKEDYYVTPDQLWVPLRWIAPELVDEVHGNLLVVDQTKESNVWSLGVTIWELFELGSQ 208 (269)
T ss_pred ceEEEcCCCcEEECCccccccccCcceeecCCCcCCcccccCHhHhccccccccccCCCccchhHHHHHHHHHHHhCCCC
Confidence 3566666667788999998876655432222234578899999987532 35889999999999999997 999
Q ss_pred CCCCCchhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHh
Q 038019 715 SSDKSLDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLA 785 (866)
Q Consensus 715 p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~ 785 (866)
|+......+ ...+.. .+......+|.+.....+.. .++...|| .+|++||+|.||++.|+
T Consensus 209 p~~~~~~~~---~~~~~~----~~~~~~~~~~~~~~~~~~~~---~~l~~~c~-~~P~~Rpt~~~l~~~l~ 268 (269)
T cd05087 209 PYRHLSDEQ---VLTYTV----REQQLKLPKPRLKLPLSDRW---YEVMQFCW-LQPEQRPSAEEVHLLLS 268 (269)
T ss_pred CCCCCChHH---HHHHHh----hcccCCCCCCccCCCCChHH---HHHHHHHh-cCcccCCCHHHHHHHhc
Confidence 986543322 111111 11122333344322222333 34555898 57999999999999885
|
Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 1 (Aatyk1) and Aatyk3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk1 and Aatyk3 are members of the Aatyk subfamily of proteins. Aatyk3 is a receptor kinase containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 has a similar domain arrangement but without the transmembrane segment and is thus, a cytoplasmic (or nonreceptor) kinase. The expression of Aatyk1 (also referred simply as Aatyk) is upregulated during growth arrest and apoptosis in myeloid cells |
| >cd05105 PTKc_PDGFR_alpha Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor alpha | Back alignment and domain information |
|---|
Probab=99.32 E-value=8.5e-13 Score=148.39 Aligned_cols=132 Identities=17% Similarity=0.218 Sum_probs=90.4
Q ss_pred CcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHh-cCCCCCCCch
Q 038019 643 PNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIIS-GRASSDKSLD 721 (866)
Q Consensus 643 ~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~t-g~~p~~~~~~ 721 (866)
.|++...+...++.|||.++.+.............++..|||||++.+..++.++|||||||+++||++ |+.|+.....
T Consensus 266 ~Nill~~~~~~kL~DfGla~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwSlGvil~ellt~g~~P~~~~~~ 345 (400)
T cd05105 266 RNVLLAQGKIVKICDFGLARDIMHDSNYVSKGSTFLPVKWMAPESIFDNLYTTLSDVWSYGILLWEIFSLGGTPYPGMIV 345 (400)
T ss_pred HhEEEeCCCEEEEEeCCcceeccccccccccCCcCCCcceEChhhhcCCCCCchhhHHHHHHHHHHHHHCCCCCCcccch
Confidence 366666666678899999887654322222223356788999999998999999999999999999997 8899865322
Q ss_pred hhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhcCc
Q 038019 722 MEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLAGDI 788 (866)
Q Consensus 722 ~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~~~~ 788 (866)
... + ......+.. +.. +......+.+++..||+.+|++||+|.+|+++|+...
T Consensus 346 ~~~--~----~~~~~~~~~-----~~~---~~~~~~~l~~li~~cl~~dP~~RPt~~~l~~~l~~l~ 398 (400)
T cd05105 346 DST--F----YNKIKSGYR-----MAK---PDHATQEVYDIMVKCWNSEPEKRPSFLHLSDIVESLL 398 (400)
T ss_pred hHH--H----HHHHhcCCC-----CCC---CccCCHHHHHHHHHHCccCHhHCcCHHHHHHHHHHHc
Confidence 111 1 111111110 111 1122345667888999999999999999999998643
|
Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) alpha; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR alpha is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR alpha forms homodimers or heterodimers with PDGFR beta, depending on the nature of the PDGF ligand. PDGF-AA, PDGF- |
| >cd05084 PTKc_Fes Catalytic domain of the Protein Tyrosine Kinase, Fes | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.8e-12 Score=136.54 Aligned_cols=129 Identities=22% Similarity=0.235 Sum_probs=87.2
Q ss_pred CCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHh-cCCCCCCCc
Q 038019 642 KPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIIS-GRASSDKSL 720 (866)
Q Consensus 642 ~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~t-g~~p~~~~~ 720 (866)
..|++...+...++.|||.++.+..+.+.........+..|+|||++..+.++.++|||||||+++|+++ |+.|+....
T Consensus 122 p~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~e~~~~~~~p~~~~~ 201 (252)
T cd05084 122 ARNCLVTEKNVLKISDFGMSREEEDGVYASTGGMKQIPVKWTAPEALNYGRYSSESDVWSFGILLWEAFSLGAVPYANLS 201 (252)
T ss_pred hheEEEcCCCcEEECccccCcccccccccccCCCCCCceeecCchhhcCCCCChHHHHHHHHHHHHHHHhCCCCCccccC
Confidence 3467777666778999999887665432211111123467999999999999999999999999999998 888876433
Q ss_pred hhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHh
Q 038019 721 DMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLA 785 (866)
Q Consensus 721 ~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~ 785 (866)
... .......+ ..+.. +......+.+++.+|++.+|++||+|.+|.++|+
T Consensus 202 ~~~-------~~~~~~~~-----~~~~~---~~~~~~~~~~li~~~l~~~p~~Rps~~~~~~~l~ 251 (252)
T cd05084 202 NQQ-------TREAIEQG-----VRLPC---PELCPDAVYRLMERCWEYDPGQRPSFSTVHQELQ 251 (252)
T ss_pred HHH-------HHHHHHcC-----CCCCC---cccCCHHHHHHHHHHcCCChhhCcCHHHHHHHHh
Confidence 221 11111111 00111 1112235666777999999999999999999986
|
Protein Tyrosine Kinase (PTK) family; Fes (or Fps) kinase subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes kinase is expressed in myeloid, vascular |
| >cd05044 PTKc_c-ros Catalytic domain of the Protein Tyrosine Kinase, C-ros | Back alignment and domain information |
|---|
Probab=99.32 E-value=2e-12 Score=137.64 Aligned_cols=119 Identities=23% Similarity=0.339 Sum_probs=82.7
Q ss_pred HHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHh-cCCCCCCCchhhhhcHHHH
Q 038019 652 RSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIIS-GRASSDKSLDMEKIYLLEW 730 (866)
Q Consensus 652 ~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~t-g~~p~~~~~~~~~~~l~~~ 730 (866)
..++.|||.++.+..+..-.......++..|+|||+...+.++.++|||||||+++||+| |+.|+......+ ...+
T Consensus 149 ~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~ellt~g~~p~~~~~~~~---~~~~ 225 (269)
T cd05044 149 VVKIGDFGLARDIYKSDYYRKEGEGLLPVRWMAPESLLDGKFTTQSDVWSFGVLMWEILTLGQQPYPALNNQE---VLQH 225 (269)
T ss_pred ceEECCcccccccccccccccCcccCCCccccCHHHHccCCcccchhHHHHHHHHHHHHHcCCCCCcccCHHH---HHHH
Confidence 567899998877754433222223356789999999999999999999999999999998 999986433221 2222
Q ss_pred HHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHh
Q 038019 731 AWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLA 785 (866)
Q Consensus 731 ~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~ 785 (866)
+. .+.. . .... .....+.+++.+|++.+|++||+|.+|.++|+
T Consensus 226 ~~----~~~~--~---~~~~---~~~~~~~~li~~~l~~~p~~Rp~~~~i~~~l~ 268 (269)
T cd05044 226 VT----AGGR--L---QKPE---NCPDKIYQLMTNCWAQDPSERPTFDRIQEILQ 268 (269)
T ss_pred Hh----cCCc--c---CCcc---cchHHHHHHHHHHcCCCcccCCCHHHHHHHHh
Confidence 11 1110 0 1111 12234556777999999999999999999986
|
Protein Tyrosine Kinases (PTK) family; C-ros and Drosophila Sevenless proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The proto-oncogene c-ros encodes an orphan receptor tyr kinase (RTK) with an unknown ligand. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. C-ros is expressed in embryonic cells of the kidney, intestine and lung, but disappears soon after birth. It persists only in the adult epididymis. Male |
| >cd05052 PTKc_Abl Catalytic domain of the Protein Tyrosine Kinase, Abelson kinase | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.7e-12 Score=137.84 Aligned_cols=131 Identities=20% Similarity=0.205 Sum_probs=89.7
Q ss_pred CCCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHh-cCCCCCCC
Q 038019 641 SKPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIIS-GRASSDKS 719 (866)
Q Consensus 641 ~~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~t-g~~p~~~~ 719 (866)
...|++..++...++.|||.++.+..+.+. ......++.+|+|||+.....++.++|||||||+++||+| |+.|+...
T Consensus 131 kp~nil~~~~~~~kl~df~~~~~~~~~~~~-~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t~g~~p~~~~ 209 (263)
T cd05052 131 AARNCLVGENHLVKVADFGLSRLMTGDTYT-AHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGI 209 (263)
T ss_pred CcceEEEcCCCcEEeCCCccccccccceee-ccCCCCCccccCCHHHhccCCCCchhHHHHHHHHHHHHHcCCCCCCCCC
Confidence 334677777777889999998887654321 1112234678999999999999999999999999999998 88888643
Q ss_pred chhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhcC
Q 038019 720 LDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLAGD 787 (866)
Q Consensus 720 ~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~~~ 787 (866)
...+ + ......+ ..+.... .....+.+++.+|++.+|++||+|.+++++|+..
T Consensus 210 ~~~~---~----~~~~~~~-----~~~~~~~---~~~~~~~~li~~cl~~~p~~Rp~~~~l~~~l~~~ 262 (263)
T cd05052 210 DLSQ---V----YELLEKG-----YRMERPE---GCPPKVYELMRACWQWNPSDRPSFAEIHQAFETM 262 (263)
T ss_pred CHHH---H----HHHHHCC-----CCCCCCC---CCCHHHHHHHHHHccCCcccCCCHHHHHHHHHhh
Confidence 2211 1 1111111 1111111 1123455667799999999999999999999853
|
Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays |
| >KOG0578 consensus p21-activated serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.2e-12 Score=142.72 Aligned_cols=130 Identities=18% Similarity=0.240 Sum_probs=93.1
Q ss_pred hccCCCCCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCC
Q 038019 636 LVGIGSKPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRAS 715 (866)
Q Consensus 636 ~~~~~~~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p 715 (866)
+|+....-++++..+...++.|||....+-...- --..++||+.|||||+.....|..|.||||+||+.+||+-|.+|
T Consensus 391 iHrDIKSDnILL~~~g~vKltDFGFcaqi~~~~~--KR~TmVGTPYWMAPEVvtrk~YG~KVDIWSLGIMaIEMveGEPP 468 (550)
T KOG0578|consen 391 IHRDIKSDNILLTMDGSVKLTDFGFCAQISEEQS--KRSTMVGTPYWMAPEVVTRKPYGPKVDIWSLGIMAIEMVEGEPP 468 (550)
T ss_pred eeeccccceeEeccCCcEEEeeeeeeeccccccC--ccccccCCCCccchhhhhhcccCccccchhhhhHHHHHhcCCCC
Confidence 3333444577887788899999999887765432 23456899999999999999999999999999999999999999
Q ss_pred CCCCchhhhhcHHHHHHHHhhcCCcccccCCccc--ccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 716 SDKSLDMEKIYLLEWAWNLHENNQSFGLVDPTLT--EFNDKEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 716 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~--~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
|-...+-... +.....|. |.+. +....+..+++. +|++.|+++||++.|+++
T Consensus 469 YlnE~PlrAl------yLIa~ng~------P~lk~~~klS~~~kdFL~---~cL~~dv~~RasA~eLL~ 522 (550)
T KOG0578|consen 469 YLNENPLRAL------YLIATNGT------PKLKNPEKLSPELKDFLD---RCLVVDVEQRASAKELLE 522 (550)
T ss_pred ccCCChHHHH------HHHhhcCC------CCcCCccccCHHHHHHHH---HHhhcchhcCCCHHHHhc
Confidence 8753332221 11122221 2331 122234555555 899999999999999864
|
|
| >cd05116 PTKc_Syk Catalytic domain of the Protein Tyrosine Kinase, Spleen tyrosine kinase | Back alignment and domain information |
|---|
Probab=99.32 E-value=3.2e-12 Score=135.18 Aligned_cols=127 Identities=23% Similarity=0.254 Sum_probs=88.4
Q ss_pred CcccCHHHHHHHhcCCccccccCCCCceeEEEe---ecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHh-cCCCCCC
Q 038019 643 PNIFGYAELRSATKDFNRSNKLGEGGYGPVYKV---TANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIIS-GRASSDK 718 (866)
Q Consensus 643 ~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~---~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~t-g~~p~~~ 718 (866)
.|++...+...++.|||.++.++.... .+.. ..++..|+|||+...+.++.++|||||||+++||+| |+.|+..
T Consensus 124 ~nill~~~~~~kl~Dfg~~~~~~~~~~--~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~ 201 (257)
T cd05116 124 RNVLLVTQHYAKISDFGLSKALGADEN--YYKAKTHGKWPVKWYAPECMNYYKFSSKSDVWSFGVLMWEAFSYGQKPYKG 201 (257)
T ss_pred hhEEEcCCCeEEECCCccccccCCCCC--eeeecCCCCCCccccCHhHhccCCcCchhHHHHHHHHHHHHHhCCCCCCCC
Confidence 466666666678899999988865432 1221 234578999999988889999999999999999998 9999875
Q ss_pred CchhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhc
Q 038019 719 SLDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLAG 786 (866)
Q Consensus 719 ~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~~ 786 (866)
....+ +.+. ...+.. +..... ....+.++...|++.+|++||+|.+|+++|+.
T Consensus 202 ~~~~~---~~~~----i~~~~~-----~~~~~~---~~~~l~~li~~~~~~~p~~Rp~~~~i~~~l~~ 254 (257)
T cd05116 202 MKGNE---VTQM----IESGER-----MECPQR---CPPEMYDLMKLCWTYGVDERPGFAVVELRLRN 254 (257)
T ss_pred CCHHH---HHHH----HHCCCC-----CCCCCC---CCHHHHHHHHHHhccCchhCcCHHHHHHHHhc
Confidence 43221 2222 222211 111111 12334566779999999999999999999974
|
Protein Tyrosine Kinase (PTK) family; Spleen tyrosine kinase (Syk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk, together with Zap-70, form the Syk subfamily of kinases which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Syk was first cloned from the spleen, and its function in hematopoietic cells is well-established. Syk is involved in the signaling downstream of activated receptors (including B-cell and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferatio |
| >cd07862 STKc_CDK6 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 6 | Back alignment and domain information |
|---|
Probab=99.32 E-value=6.8e-13 Score=143.07 Aligned_cols=135 Identities=15% Similarity=0.125 Sum_probs=88.0
Q ss_pred CCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCCch
Q 038019 642 KPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSLD 721 (866)
Q Consensus 642 ~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~ 721 (866)
..|++...+...++.|||.++..+... ......||..|+|||.+....++.++|||||||+++||++|+.|+.....
T Consensus 138 p~Nil~~~~~~~kl~Dfg~~~~~~~~~---~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~~f~~~~~ 214 (290)
T cd07862 138 PQNILVTSSGQIKLADFGLARIYSFQM---ALTSVVVTLWYRAPEVLLQSSYATPVDLWSVGCIFAEMFRRKPLFRGSSD 214 (290)
T ss_pred HHHEEEcCCCCEEEccccceEeccCCc---ccccccccccccChHHHhCCCCCCccchHHHHHHHHHHHcCCCCcCCCCH
Confidence 346777777778899999988765432 22344689999999999888999999999999999999999999876443
Q ss_pred hhhhcHHHHHHHHhh---cCCc-------ccccCCccc----ccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 722 MEKIYLLEWAWNLHE---NNQS-------FGLVDPTLT----EFNDKEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 722 ~~~~~l~~~~~~~~~---~~~~-------~~~~d~~l~----~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
.+ ....+..... .... ...+++... ....+....+.++..+|++.+|++||++.|+++
T Consensus 215 ~~---~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~s~~~~l~ 286 (290)
T cd07862 215 VD---QLGKILDVIGLPGEEDWPRDVALPRQAFHSKSAQPIEKFVTDIDELGKDLLLKCLTFNPAKRISAYSALS 286 (290)
T ss_pred HH---HHHHHHHHhCCCChhhchhhhcccchhccCCCCCCHHHHccCCCHHHHHHHHHHhccCchhcCCHHHHhc
Confidence 22 1222211110 0000 001111100 000111123456788999999999999999874
|
Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 6 (CDK6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK6 is regulated by D-type cyclins and INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein, implicating it to function in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the cytopla |
| >cd05100 PTKc_FGFR3 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 3 | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.3e-12 Score=142.02 Aligned_cols=135 Identities=19% Similarity=0.209 Sum_probs=92.1
Q ss_pred CCCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHh-cCCCCCCC
Q 038019 641 SKPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIIS-GRASSDKS 719 (866)
Q Consensus 641 ~~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~t-g~~p~~~~ 719 (866)
...|++..++...++.|||.++.++.........+..++..|+|||+.....++.++|||||||+++||++ |+.|+...
T Consensus 161 kp~Nill~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~ 240 (334)
T cd05100 161 AARNVLVTEDNVMKIADFGLARDVHNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLLWEIFTLGGSPYPGI 240 (334)
T ss_pred ccceEEEcCCCcEEECCcccceecccccccccccCCCcCceEcCHHHhccCCcCchhhhHHHHHHHHHHHhcCCCCCCCC
Confidence 34467776677788999999887765432211222234568999999999999999999999999999999 88887643
Q ss_pred chhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhcCcCC
Q 038019 720 LDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLAGDIEV 790 (866)
Q Consensus 720 ~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~~~~~~ 790 (866)
... ++.... ..+...+ . +......+.+++..|++.+|++||+|.|+++.|+.....
T Consensus 241 ~~~------~~~~~~-~~~~~~~-----~---~~~~~~~l~~li~~cl~~~p~~Rps~~ell~~l~~~~~~ 296 (334)
T cd05100 241 PVE------ELFKLL-KEGHRMD-----K---PANCTHELYMIMRECWHAVPSQRPTFKQLVEDLDRVLTV 296 (334)
T ss_pred CHH------HHHHHH-HcCCCCC-----C---CCCCCHHHHHHHHHHcccChhhCcCHHHHHHHHHHHhhh
Confidence 221 122111 1111111 1 111223466777899999999999999999999866543
|
Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 3 (FGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR3 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to |
| >PHA02882 putative serine/threonine kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.3e-12 Score=141.31 Aligned_cols=133 Identities=12% Similarity=0.070 Sum_probs=88.5
Q ss_pred CCcccCHHHHHHHhcCCccccccCCCCcee-----EEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCC
Q 038019 642 KPNIFGYAELRSATKDFNRSNKLGEGGYGP-----VYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASS 716 (866)
Q Consensus 642 ~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~-----vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~ 716 (866)
..|++...+...++.|||.++.+...+... ......||+.|+|||+..+..++.++|||||||+++||++|+.|+
T Consensus 154 p~Nill~~~~~~~l~DFGla~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~DiwSlG~~l~el~~g~~P~ 233 (294)
T PHA02882 154 PENIMVDGNNRGYIIDYGIASHFIIHGKHIEYSKEQKDLHRGTLYYAGLDAHNGACVTRRGDLESLGYCMLKWAGIKLPW 233 (294)
T ss_pred HHHEEEcCCCcEEEEEcCCceeeccCCcccccccccccccCCCccccCHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCC
Confidence 346666666677899999998775432111 111236999999999999999999999999999999999999999
Q ss_pred CCCchhhh-hcH--HHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHh
Q 038019 717 DKSLDMEK-IYL--LEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLA 785 (866)
Q Consensus 717 ~~~~~~~~-~~l--~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~ 785 (866)
........ ... .++..+. ..+.. .+... . ..+.++...|++.+|++||++.++.+.++
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~-~~~~~------~~~~~-~---~~~~~~~~~~~~~~~~~rp~~~~l~~~~~ 294 (294)
T PHA02882 234 KGFGHNGNLIHAAKCDFIKRL-HEGKI------KIKNA-N---KFIYDFIECVTKLSYEEKPDYDALIKIFD 294 (294)
T ss_pred CccccchHHHHHhHHHHHHHh-hhhhh------ccCCC-C---HHHHHHHHHHHhCCCCCCCCHHHHHHhhC
Confidence 75432111 111 1111111 11110 01111 2 33455666899999999999999998764
|
|
| >cd05113 PTKc_Btk_Bmx Catalytic domain of the Protein Tyrosine Kinases, Bruton's tyrosine kinase and Bone marrow kinase on the X chromosome | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.3e-12 Score=138.13 Aligned_cols=129 Identities=17% Similarity=0.249 Sum_probs=90.0
Q ss_pred CCCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHh-cCCCCCCC
Q 038019 641 SKPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIIS-GRASSDKS 719 (866)
Q Consensus 641 ~~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~t-g~~p~~~~ 719 (866)
...|++...+...++.|||.++.+..+.+. ...+..++..|+|||+...+.++.++|||||||+++||+| |+.|+...
T Consensus 127 ~p~nili~~~~~~kl~d~g~~~~~~~~~~~-~~~~~~~~~~y~~pe~~~~~~~~~~~Di~slG~~l~~l~~~g~~p~~~~ 205 (256)
T cd05113 127 AARNCLVDDQGCVKVSDFGLSRYVLDDEYT-SSVGSKFPVRWSPPEVLLYSKFSSKSDVWAFGVLMWEVYSLGKMPYERF 205 (256)
T ss_pred CcceEEEcCCCCEEECCCccceecCCCcee-ecCCCccChhhCCHHHHhcCcccchhHHHHHHHHHHHHhcCCCCCcCcC
Confidence 334677666677889999998877665432 2223446678999999998899999999999999999999 99998654
Q ss_pred chhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHh
Q 038019 720 LDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLA 785 (866)
Q Consensus 720 ~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~ 785 (866)
...+ ..+.+ ..+.. +..... ....+.+++.+||+.+|++||++.++++.|+
T Consensus 206 ~~~~---~~~~~----~~~~~-----~~~~~~---~~~~~~~li~~cl~~~p~~Rp~~~~ll~~~~ 256 (256)
T cd05113 206 NNSE---TVEKV----SQGLR-----LYRPHL---ASEKVYAIMYSCWHEKAEERPTFQQLLSSIE 256 (256)
T ss_pred CHHH---HHHHH----hcCCC-----CCCCCC---CCHHHHHHHHHHcCCCcccCCCHHHHHHhhC
Confidence 3221 22221 11110 001111 1245566777999999999999999998774
|
Protein Tyrosine Kinase (PTK) family; Bruton's tyrosine kinase (Btk) and Bone marrow kinase on the X chromosome (Bmx); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Btk and Bmx (also named Etk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds |
| >cd05058 PTKc_Met_Ron Catalytic domain of the Protein Tyrosine Kinases, Met and Ron | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.5e-12 Score=138.09 Aligned_cols=132 Identities=20% Similarity=0.243 Sum_probs=88.8
Q ss_pred CCCcccCHHHHHHHhcCCccccccCCCCceeEE--EeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcC-CCCC
Q 038019 641 SKPNIFGYAELRSATKDFNRSNKLGEGGYGPVY--KVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGR-ASSD 717 (866)
Q Consensus 641 ~~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy--~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~-~p~~ 717 (866)
...|++...+...++.|||.++.+....+..+. .+..++..|+|||+.....++.++|||||||+++||+||+ .|+.
T Consensus 125 k~~nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~~~~~~~ 204 (262)
T cd05058 125 AARNCMLDESFTVKVADFGLARDIYDKEYYSVHNHTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYP 204 (262)
T ss_pred CcceEEEcCCCcEEECCccccccccCCcceeecccccCcCCccccChhHhccCccchHHHHHHHHHHHHHHHcCCCCCCC
Confidence 334667666777789999998876543322211 1335677899999999899999999999999999999964 4554
Q ss_pred CCchhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhcC
Q 038019 718 KSLDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLAGD 787 (866)
Q Consensus 718 ~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~~~ 787 (866)
.... ..+..++.. +. .+..... ....+.+++..|++.+|++||++.||++.|+..
T Consensus 205 ~~~~---~~~~~~~~~----~~-----~~~~~~~---~~~~~~~li~~cl~~~p~~Rp~~~~il~~l~~~ 259 (262)
T cd05058 205 DVDS---FDITVYLLQ----GR-----RLLQPEY---CPDPLYEVMLSCWHPKPEMRPTFSELVSRIEQI 259 (262)
T ss_pred CCCH---HHHHHHHhc----CC-----CCCCCCc---CCHHHHHHHHHHcCCChhhCCCHHHHHHHHHHH
Confidence 3221 222322211 11 0111111 123466788899999999999999999999854
|
Protein Tyrosine Kinase (PTK) family; Met and Ron; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Met and Ron are receptor tyr kinases (RTKs) composed of an alpha-beta heterodimer. The extracellular alpha chain is disulfide linked to the beta chain, which contains an extracellular ligand-binding region with a sema domain, a PSI domain and four IPT repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Met binds to the ligand, hepatocyte growth factor/scatter factor (HGF/SF), and is also ca |
| >cd05075 PTKc_Axl Catalytic domain of the Protein Tyrosine Kinase, Axl | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.2e-12 Score=139.54 Aligned_cols=129 Identities=19% Similarity=0.227 Sum_probs=89.3
Q ss_pred CcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHh-cCCCCCCCch
Q 038019 643 PNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIIS-GRASSDKSLD 721 (866)
Q Consensus 643 ~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~t-g~~p~~~~~~ 721 (866)
.|++..++...++.|||.++.+..+.....-....++..|+|||+.....++.++||||||++++||++ |+.|+.....
T Consensus 141 ~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~ 220 (272)
T cd05075 141 RNCMLNENMNVCVADFGLSKKIYNGDYYRQGRIAKMPVKWIAIESLADRVYTTKSDVWSFGVTMWEIATRGQTPYPGVEN 220 (272)
T ss_pred hheEEcCCCCEEECCCCcccccCcccceecCCcccCCcccCCHHHccCCCcChHHHHHHHHHHHHHHHcCCCCCCCCCCH
Confidence 366666666678899999998876543221122245678999999999999999999999999999999 7888864322
Q ss_pred hhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhc
Q 038019 722 MEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLAG 786 (866)
Q Consensus 722 ~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~~ 786 (866)
. .+. .....+.... . .......+.+++.+|++.+|++||+|.+|++.|+.
T Consensus 221 ~---~~~----~~~~~~~~~~-----~---~~~~~~~~~~li~~~l~~~p~~Rps~~~l~~~l~~ 270 (272)
T cd05075 221 S---EIY----DYLRQGNRLK-----Q---PPDCLDGLYSLMSSCWLLNPKDRPSFETLRCELEK 270 (272)
T ss_pred H---HHH----HHHHcCCCCC-----C---CCCCCHHHHHHHHHHcCCCcccCcCHHHHHHHHHh
Confidence 1 111 1122221111 0 11112345677789999999999999999999985
|
Protein Tyrosine Kinase (PTK) family; Axl; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl is widely expressed in a variety of organs and cells including epithelial, mesenchymal, hematopoietic, as well as non-transfor |
| >cd05112 PTKc_Itk Catalytic domain of the Protein Tyrosine Kinase, Interleukin-2-inducible T-cell Kinase | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.1e-12 Score=138.49 Aligned_cols=128 Identities=24% Similarity=0.335 Sum_probs=90.5
Q ss_pred CCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHh-cCCCCCCCc
Q 038019 642 KPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIIS-GRASSDKSL 720 (866)
Q Consensus 642 ~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~t-g~~p~~~~~ 720 (866)
..|++...+...++.|||.++.++...+ .+..+..++.+|+|||+...+.++.++|||||||+++|+++ |+.|+....
T Consensus 128 p~ni~i~~~~~~~l~d~g~~~~~~~~~~-~~~~~~~~~~~~~aPe~~~~~~~~~~~Dv~slG~~l~el~~~g~~p~~~~~ 206 (256)
T cd05112 128 ARNCLVGENQVVKVSDFGMTRFVLDDQY-TSSTGTKFPVKWSSPEVFSFSKYSSKSDVWSFGVLMWEVFSEGKTPYENRS 206 (256)
T ss_pred cceEEEcCCCeEEECCCcceeecccCcc-cccCCCccchhhcCHhHhccCCcChHHHHHHHHHHHHHHHcCCCCCCCcCC
Confidence 3466666556677899999887765432 33445556789999999998999999999999999999998 999987533
Q ss_pred hhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHh
Q 038019 721 DMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLA 785 (866)
Q Consensus 721 ~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~ 785 (866)
..+ +.+ . ..++ ....+|.. ....+.+++.+|++.+|++||+|.||+++|.
T Consensus 207 ~~~---~~~---~-~~~~--~~~~~~~~------~~~~~~~l~~~~l~~~p~~Rp~~~~~l~~l~ 256 (256)
T cd05112 207 NSE---VVE---T-INAG--FRLYKPRL------ASQSVYELMQHCWKERPEDRPSFSLLLHQLA 256 (256)
T ss_pred HHH---HHH---H-HhCC--CCCCCCCC------CCHHHHHHHHHHcccChhhCCCHHHHHHhhC
Confidence 211 111 1 1111 11122222 1245677888999999999999999999873
|
Protein Tyrosine Kinase (PTK) family; Interleukin-2 (IL-2)-inducible T-cell kinase (Itk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Itk (also known as Tsk or Emt) is a member of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activ |
| >cd05064 PTKc_EphR_A10 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A10 | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.3e-12 Score=138.99 Aligned_cols=130 Identities=18% Similarity=0.208 Sum_probs=86.8
Q ss_pred CCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHh-cCCCCCCCc
Q 038019 642 KPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIIS-GRASSDKSL 720 (866)
Q Consensus 642 ~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~t-g~~p~~~~~ 720 (866)
..|++...+...++.|||.......... .......++..|+|||+...+.++.++|||||||+++|+++ |+.|+....
T Consensus 135 p~nili~~~~~~~l~dfg~~~~~~~~~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~ell~~g~~p~~~~~ 213 (266)
T cd05064 135 AHKVLVNSDLVCKISGFRRLQEDKSEAI-YTTMSGKSPVLWAAPEAIQYHHFSSASDVWSFGIVMWEVMSYGERPYWDMS 213 (266)
T ss_pred HhhEEEcCCCcEEECCCcccccccccch-hcccCCCCceeecCHHHHhhCCccchhHHHHHHHHHHHHhcCCCCCcCcCC
Confidence 3466666666777889987655432211 01111235678999999999999999999999999999775 999987543
Q ss_pred hhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhcC
Q 038019 721 DMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLAGD 787 (866)
Q Consensus 721 ~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~~~ 787 (866)
..+ +.+.+ .++.. +.. +......+.+++..||+.+|++||+|.++.+.|+..
T Consensus 214 ~~~---~~~~~----~~~~~-----~~~---~~~~~~~~~~li~~c~~~~p~~RP~~~~i~~~l~~~ 265 (266)
T cd05064 214 GQD---VIKAV----EDGFR-----LPA---PRNCPNLLHQLMLDCWQKERGERPRFSQIHSILSKM 265 (266)
T ss_pred HHH---HHHHH----HCCCC-----CCC---CCCCCHHHHHHHHHHcCCCchhCCCHHHHHHHHHhh
Confidence 322 22221 22211 111 112233466677799999999999999999998753
|
Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA10 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchor |
| >cd05109 PTKc_HER2 Catalytic domain of the Protein Tyrosine Kinase, HER2 | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.4e-12 Score=138.03 Aligned_cols=134 Identities=16% Similarity=0.182 Sum_probs=90.9
Q ss_pred CCCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHh-cCCCCCCC
Q 038019 641 SKPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIIS-GRASSDKS 719 (866)
Q Consensus 641 ~~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~t-g~~p~~~~ 719 (866)
...|++...+...++.|||.++.+....-.....+..++..|+|||....+.++.++|||||||++||++| |+.|++..
T Consensus 136 kp~Nil~~~~~~~kL~dfG~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~ 215 (279)
T cd05109 136 AARNVLVKSPNHVKITDFGLARLLDIDETEYHADGGKVPIKWMALESILHRRFTHQSDVWSYGVTVWELMTFGAKPYDGI 215 (279)
T ss_pred ccceEEEcCCCcEEECCCCceeecccccceeecCCCccchhhCCHHHhccCCCCchhHHHHHHHHHHHHHcCCCCCCCCC
Confidence 33466665556678999999887754322111122345678999999998999999999999999999998 89998754
Q ss_pred chhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhcCcC
Q 038019 720 LDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLAGDIE 789 (866)
Q Consensus 720 ~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~~~~~ 789 (866)
... .+..++. .+... + . +......+.+++..|++.+|++||++.+++..|+....
T Consensus 216 ~~~---~~~~~~~----~~~~~----~-~---~~~~~~~~~~li~~~l~~dp~~Rp~~~~l~~~l~~~~~ 270 (279)
T cd05109 216 PAR---EIPDLLE----KGERL----P-Q---PPICTIDVYMIMVKCWMIDSECRPRFRELVDEFSRMAR 270 (279)
T ss_pred CHH---HHHHHHH----CCCcC----C-C---CccCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHhhc
Confidence 322 2222222 11110 0 0 11122345667779999999999999999999985543
|
Protein Tyrosine Kinase (PTK) family; HER2 (ErbB2, HER2/neu); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER2 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve |
| >cd05069 PTKc_Yes Catalytic domain of the Protein Tyrosine Kinase, Yes | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.1e-12 Score=136.89 Aligned_cols=130 Identities=23% Similarity=0.325 Sum_probs=90.9
Q ss_pred CCCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHh-cCCCCCCC
Q 038019 641 SKPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIIS-GRASSDKS 719 (866)
Q Consensus 641 ~~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~t-g~~p~~~~ 719 (866)
...|++..++...++.|||.++.+..+... ...+..++.+|+|||+...+.++.++|||||||+++||+| |+.|+...
T Consensus 129 ~~~Nill~~~~~~~l~dfg~~~~~~~~~~~-~~~~~~~~~~y~~Pe~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~ 207 (260)
T cd05069 129 RAANILVGDNLVCKIADFGLARLIEDNEYT-ARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELVTKGRVPYPGM 207 (260)
T ss_pred CcceEEEcCCCeEEECCCccceEccCCccc-ccCCCccchhhCCHHHhccCCcChHHHHHHHHHHHHHHHhCCCCCCCCC
Confidence 334677777777888999999887655432 2223346788999999998999999999999999999999 89888754
Q ss_pred chhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhc
Q 038019 720 LDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLAG 786 (866)
Q Consensus 720 ~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~~ 786 (866)
...+ ..++... +. .+.. +......+.+++.+|++.+|++||+|.+|.+.|+.
T Consensus 208 ~~~~---~~~~~~~----~~-----~~~~---~~~~~~~~~~li~~~l~~~p~~Rp~~~~i~~~l~~ 259 (260)
T cd05069 208 VNRE---VLEQVER----GY-----RMPC---PQGCPESLHELMKLCWKKDPDERPTFEYIQSFLED 259 (260)
T ss_pred CHHH---HHHHHHc----CC-----CCCC---CcccCHHHHHHHHHHccCCcccCcCHHHHHHHHhc
Confidence 3222 2222211 10 0111 11122345556679999999999999999999974
|
Protein Tyrosine Kinase (PTK) family; Yes kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine an |
| >cd05068 PTKc_Frk_like Catalytic domain of Fyn-related kinase-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.1e-12 Score=139.22 Aligned_cols=129 Identities=22% Similarity=0.302 Sum_probs=88.9
Q ss_pred CCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHh-cCCCCCCCc
Q 038019 642 KPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIIS-GRASSDKSL 720 (866)
Q Consensus 642 ~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~t-g~~p~~~~~ 720 (866)
..|++..++...++.|||.++.++...+.. ..+...+.+|+|||+.....++.++||||||++++||+| |+.|+....
T Consensus 131 p~Nil~~~~~~~~l~dfg~~~~~~~~~~~~-~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~ 209 (261)
T cd05068 131 ARNVLVGENNICKVADFGLARVIKEDIYEA-REGAKFPIKWTAPEAALYNRFSIKSDVWSFGILLTEIVTYGRMPYPGMT 209 (261)
T ss_pred cceEEEcCCCCEEECCcceEEEccCCcccc-cCCCcCceeccCccccccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCC
Confidence 346666666677889999998887443211 112223458999999999999999999999999999999 998886533
Q ss_pred hhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhc
Q 038019 721 DMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLAG 786 (866)
Q Consensus 721 ~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~~ 786 (866)
... +.. ....+.. . +. +......+.+++.+|++.+|++||+|.++++.|+.
T Consensus 210 ~~~---~~~----~~~~~~~---~-~~----~~~~~~~~~~li~~~l~~~P~~Rp~~~~l~~~l~~ 260 (261)
T cd05068 210 NAE---VLQ----QVDQGYR---M-PC----PPGCPKELYDIMLDCWKEDPDDRPTFETLQWKLED 260 (261)
T ss_pred HHH---HHH----HHHcCCC---C-CC----CCcCCHHHHHHHHHHhhcCcccCCCHHHHHHHHhc
Confidence 221 111 1111100 0 10 11123456677889999999999999999999974
|
Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins a |
| >cd05071 PTKc_Src Catalytic domain of the Protein Tyrosine Kinase, Src | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.6e-12 Score=137.98 Aligned_cols=131 Identities=22% Similarity=0.297 Sum_probs=92.8
Q ss_pred CCCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHh-cCCCCCCC
Q 038019 641 SKPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIIS-GRASSDKS 719 (866)
Q Consensus 641 ~~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~t-g~~p~~~~ 719 (866)
...|++..++...++.|||.++.+..+.+. ...+..++..|+|||+...+.++.++||||||++++|++| |+.|+...
T Consensus 129 ~p~Nill~~~~~~~L~dfg~~~~~~~~~~~-~~~~~~~~~~y~~PE~~~~~~~~~~~DvwslG~~l~ellt~g~~p~~~~ 207 (262)
T cd05071 129 RAANILVGENLVCKVADFGLARLIEDNEYT-ARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGM 207 (262)
T ss_pred CcccEEEcCCCcEEeccCCceeeccccccc-cccCCcccceecCHhHhccCCCCchhhHHHHHHHHHHHHcCCCCCCCCC
Confidence 334677777777788999999888765532 2234456788999999999999999999999999999999 88887644
Q ss_pred chhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhcC
Q 038019 720 LDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLAGD 787 (866)
Q Consensus 720 ~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~~~ 787 (866)
...+. ......+.. .. ...+....+.+++..|++.+|++||++.++.+.|+..
T Consensus 208 ~~~~~-------~~~~~~~~~-----~~---~~~~~~~~l~~li~~~l~~~p~~Rp~~~~~~~~l~~~ 260 (262)
T cd05071 208 VNREV-------LDQVERGYR-----MP---CPPECPESLHDLMCQCWRKEPEERPTFEYLQAFLEDY 260 (262)
T ss_pred ChHHH-------HHHHhcCCC-----CC---CccccCHHHHHHHHHHccCCcccCCCHHHHHHHHHHh
Confidence 32211 111111110 00 1112334567788899999999999999999999853
|
Protein Tyrosine Kinase (PTK) family; Src kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) is a cytoplasmic (or non-receptor) tyr kinase, containing an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region with a conserved tyr. It is activated by autophosphorylation at the tyr kinase domain, and is negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). c-Src is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is invo |
| >cd05072 PTKc_Lyn Catalytic domain of the Protein Tyrosine Kinase, Lyn | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.1e-12 Score=136.87 Aligned_cols=128 Identities=19% Similarity=0.283 Sum_probs=90.6
Q ss_pred CcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHh-cCCCCCCCch
Q 038019 643 PNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIIS-GRASSDKSLD 721 (866)
Q Consensus 643 ~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~t-g~~p~~~~~~ 721 (866)
.|++...+...++.|||.++.+..+.. ....+..++.+|+|||+...+.++.++|||||||+++||+| |+.|+.....
T Consensus 132 ~nili~~~~~~~l~dfg~~~~~~~~~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~t~g~~p~~~~~~ 210 (261)
T cd05072 132 ANVLVSESLMCKIADFGLARVIEDNEY-TAREGAKFPIKWTAPEAINFGSFTIKSDVWSFGILLYEIVTYGKIPYPGMSN 210 (261)
T ss_pred hhEEecCCCcEEECCCccceecCCCce-eccCCCccceecCCHHHhccCCCChhhhhhhhHHHHHHHHccCCCCCCCCCH
Confidence 366666667778899999988765432 22333456778999999998999999999999999999999 9999864332
Q ss_pred hhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhc
Q 038019 722 MEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLAG 786 (866)
Q Consensus 722 ~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~~ 786 (866)
. ....++.. +.. .+..... ...+.+++.+|++.+|++||+|.++.++|+.
T Consensus 211 ~---~~~~~~~~----~~~----~~~~~~~----~~~~~~li~~~l~~~p~~Rp~~~~i~~~l~~ 260 (261)
T cd05072 211 S---DVMSALQR----GYR----MPRMENC----PDELYDIMKTCWKEKAEERPTFDYLQSVLDD 260 (261)
T ss_pred H---HHHHHHHc----CCC----CCCCCCC----CHHHHHHHHHHccCCcccCcCHHHHHHHHhc
Confidence 2 12222211 110 1111111 2345667779999999999999999999974
|
Protein Tyrosine Kinase (PTK) family; Lyn kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lyn is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth fa |
| >cd05063 PTKc_EphR_A2 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A2 | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.2e-12 Score=139.32 Aligned_cols=130 Identities=24% Similarity=0.283 Sum_probs=89.0
Q ss_pred CCcccCHHHHHHHhcCCccccccCCCCceeEEEe--ecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHh-cCCCCCC
Q 038019 642 KPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKV--TANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIIS-GRASSDK 718 (866)
Q Consensus 642 ~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~--~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~t-g~~p~~~ 718 (866)
..|++...+...++.|||.+..+..... ..+.. ...+..|+|||+...+.++.++|||||||++||++| |+.|+..
T Consensus 135 p~Nili~~~~~~kl~dfg~~~~~~~~~~-~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Dv~slG~il~ell~~g~~p~~~ 213 (268)
T cd05063 135 ARNILVNSNLECKVSDFGLSRVLEDDPE-GTYTTSGGKIPIRWTAPEAIAYRKFTSASDVWSFGIVMWEVMSFGERPYWD 213 (268)
T ss_pred hhhEEEcCCCcEEECCCccceecccccc-cceeccCCCcCceecCHHHhhcCCcChHhHHHHHHHHHHHHHhCCCCCCCc
Confidence 3466666677778899998877654321 11211 123457999999998999999999999999999998 9999865
Q ss_pred CchhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhcC
Q 038019 719 SLDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLAGD 787 (866)
Q Consensus 719 ~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~~~ 787 (866)
....+ + .... ..+. ..|.. .+....+.+++.+|++.+|++||+|.+|++.|++.
T Consensus 214 ~~~~~---~---~~~i-~~~~----~~~~~----~~~~~~~~~li~~c~~~~p~~Rp~~~~i~~~l~~~ 267 (268)
T cd05063 214 MSNHE---V---MKAI-NDGF----RLPAP----MDCPSAVYQLMLQCWQQDRARRPRFVDIVNLLDKL 267 (268)
T ss_pred CCHHH---H---HHHH-hcCC----CCCCC----CCCCHHHHHHHHHHcCCCcccCcCHHHHHHHHHhh
Confidence 33211 1 1111 1110 11111 11234567888899999999999999999999854
|
Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA2 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored |
| >cd05110 PTKc_HER4 Catalytic domain of the Protein Tyrosine Kinase, HER4 | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.7e-12 Score=139.44 Aligned_cols=131 Identities=18% Similarity=0.176 Sum_probs=90.0
Q ss_pred CCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHh-cCCCCCCCc
Q 038019 642 KPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIIS-GRASSDKSL 720 (866)
Q Consensus 642 ~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~t-g~~p~~~~~ 720 (866)
..|++...+...++.|||.++.+..+.......+..++..|+|||+.....++.++|||||||++||++| |+.|+....
T Consensus 137 p~Nill~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~DiwslG~~l~el~t~g~~p~~~~~ 216 (303)
T cd05110 137 ARNVLVKSPNHVKITDFGLARLLEGDEKEYNADGGKMPIKWMALECIHYRKFTHQSDVWSYGVTIWELMTFGGKPYDGIP 216 (303)
T ss_pred cceeeecCCCceEEccccccccccCcccccccCCCccccccCCHHHhccCCCChHHHHHHHHHHHHHHHhCCCCCCCCCC
Confidence 3466666666678999999987754332111223345778999999998999999999999999999998 889986533
Q ss_pred hhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhcC
Q 038019 721 DMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLAGD 787 (866)
Q Consensus 721 ~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~~~ 787 (866)
.. ...+++. .+.. ...+ ......+..++..||..+|++||+|.+|+++|+..
T Consensus 217 ~~---~~~~~~~----~~~~--~~~~------~~~~~~~~~li~~c~~~~p~~Rp~~~~l~~~l~~~ 268 (303)
T cd05110 217 TR---EIPDLLE----KGER--LPQP------PICTIDVYMVMVKCWMIDADSRPKFKELAAEFSRM 268 (303)
T ss_pred HH---HHHHHHH----CCCC--CCCC------CCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHH
Confidence 22 1222221 1111 0001 11223456677899999999999999999999854
|
Protein Tyrosine Kinase (PTK) family; HER4 (ErbB4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER4 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as bindin |
| >cd05061 PTKc_InsR Catalytic domain of the Protein Tyrosine Kinase, Insulin Receptor | Back alignment and domain information |
|---|
Probab=99.30 E-value=3e-12 Score=137.98 Aligned_cols=132 Identities=24% Similarity=0.325 Sum_probs=89.7
Q ss_pred CCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHh-cCCCCCCCc
Q 038019 642 KPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIIS-GRASSDKSL 720 (866)
Q Consensus 642 ~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~t-g~~p~~~~~ 720 (866)
..|++..++...++.|||.++.+....+........++..|+|||+...+.++.++|||||||+++||++ |+.|+....
T Consensus 147 p~nili~~~~~~~L~Dfg~~~~~~~~~~~~~~~~~~~~~~y~~pE~~~~~~~~~~~DvwslG~~l~el~~~~~~p~~~~~ 226 (288)
T cd05061 147 ARNCMVAHDFTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMAPESLKDGVFTTSSDMWSFGVVLWEITSLAEQPYQGLS 226 (288)
T ss_pred hheEEEcCCCcEEECcCCccccccccccccccCCCcccccccCHHHhccCCCChHhHHHHHHHHHHHHHhCCCCCCCCCC
Confidence 3466766677778999999887754433111111234678999999999999999999999999999999 787876433
Q ss_pred hhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhcCc
Q 038019 721 DMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLAGDI 788 (866)
Q Consensus 721 ~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~~~~ 788 (866)
..+ ..+.+ . .+.. +.. +......+.+++.+|++.+|++||+|.++++.|+...
T Consensus 227 ~~~---~~~~~---~-~~~~-----~~~---~~~~~~~~~~li~~~l~~~p~~Rps~~~ll~~l~~~~ 279 (288)
T cd05061 227 NEQ---VLKFV---M-DGGY-----LDQ---PDNCPERVTDLMRMCWQFNPKMRPTFLEIVNLLKDDL 279 (288)
T ss_pred HHH---HHHHH---H-cCCC-----CCC---CCCCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHhhc
Confidence 221 11111 1 1111 011 1112245666777999999999999999999998643
|
Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR is a receptor tyr kinase (RTK) that is composed of two alphabeta heterodimers. Binding of the insulin ligand to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR signaling plays an important role in many cellular processes including glucose homeostasis, glycogen synthesis, lipid and protein meta |
| >cd05060 PTKc_Syk_like Catalytic domain of Spleen Tyrosine Kinase-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Probab=99.30 E-value=8e-13 Score=139.78 Aligned_cols=131 Identities=21% Similarity=0.320 Sum_probs=92.6
Q ss_pred CCCCcccCHHHHHHHhcCCccccccCCCCceeEEEe---ecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHh-cCCC
Q 038019 640 GSKPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKV---TANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIIS-GRAS 715 (866)
Q Consensus 640 ~~~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~---~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~t-g~~p 715 (866)
....|++...+...++.|||.++.++.+.. .+.. ..++..|+|||+...+.++.++|||||||+++|++| |+.|
T Consensus 121 i~p~nili~~~~~~kl~df~~~~~~~~~~~--~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~~g~~p 198 (257)
T cd05060 121 LAARNVLLVNRHQAKISDFGMSRALGAGSD--YYRATTAGRWPLKWYAPECINYGKFSSKSDVWSYGVTLWEAFSYGAKP 198 (257)
T ss_pred cccceEEEcCCCcEEeccccccceeecCCc--ccccccCccccccccCHHHhcCCCCCccchHHHHHHHHHHHHcCCCCC
Confidence 334467777777778999999988865442 2222 224568999999999999999999999999999998 9999
Q ss_pred CCCCchhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhcC
Q 038019 716 SDKSLDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLAGD 787 (866)
Q Consensus 716 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~~~ 787 (866)
+...... .+..++.. +.... .+......+.+++.+|++.+|++||++.+|++.|++.
T Consensus 199 ~~~~~~~---~~~~~~~~----~~~~~--------~~~~~~~~l~~li~~cl~~~p~~Rp~~~~l~~~l~~~ 255 (257)
T cd05060 199 YGEMKGA---EVIAMLES----GERLP--------RPEECPQEIYSIMLSCWKYRPEDRPTFSELESTFRRD 255 (257)
T ss_pred cccCCHH---HHHHHHHc----CCcCC--------CCCCCCHHHHHHHHHHhcCChhhCcCHHHHHHHHHhc
Confidence 8754322 23333322 11100 0111223456778899999999999999999999854
|
Protein Tyrosine Kinase (PTK) family; Spleen Tyrosine Kinase (Syk) subfamily; catalytic (c) domain. The Syk subfamily is composed of Syk, ZAP-70, Shark, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. They are involved in the signaling downstream of activated receptors (including B-cell, T-cell, and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, mi |
| >cd05631 STKc_GRK4 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 4 | Back alignment and domain information |
|---|
Probab=99.30 E-value=1e-12 Score=141.45 Aligned_cols=125 Identities=20% Similarity=0.217 Sum_probs=84.6
Q ss_pred CcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCCchh
Q 038019 643 PNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSLDM 722 (866)
Q Consensus 643 ~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~~ 722 (866)
.|++..++...++.|||.+..+..+ ..+....||.+|||||++.++.++.++|||||||+++||++|+.|+......
T Consensus 131 ~Nill~~~~~~kl~Dfg~~~~~~~~---~~~~~~~g~~~y~aPE~~~~~~~~~~~DvwslGvil~el~~g~~pf~~~~~~ 207 (285)
T cd05631 131 ENILLDDRGHIRISDLGLAVQIPEG---ETVRGRVGTVGYMAPEVINNEKYTFSPDWWGLGCLIYEMIQGQSPFRKRKER 207 (285)
T ss_pred HHEEECCCCCEEEeeCCCcEEcCCC---CeecCCCCCCCccCHhhhcCCCCCcccCchhHHHHHHHHHhCCCCCCCCCcc
Confidence 3666666666788999998877543 2345567999999999999999999999999999999999999999754321
Q ss_pred hhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCC-----HHHHHH
Q 038019 723 EKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPP-----MSRVVA 782 (866)
Q Consensus 723 ~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPs-----m~~V~~ 782 (866)
.. .+-+........ . .+..+-...+.+++..|++.+|++||+ +.++.+
T Consensus 208 ~~---~~~~~~~~~~~~--------~-~~~~~~s~~~~~li~~~l~~~P~~R~~~~~~~~~~~~~ 260 (285)
T cd05631 208 VK---REEVDRRVKEDQ--------E-EYSEKFSEDAKSICRMLLTKNPKERLGCRGNGAAGVKQ 260 (285)
T ss_pred hh---HHHHHHHhhccc--------c-cCCccCCHHHHHHHHHHhhcCHHHhcCCCCCCHHHHhc
Confidence 11 111111111110 0 011111223455667999999999997 666664
|
Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK4 has a limited tissue distribution. It is mainly found i |
| >cd05101 PTKc_FGFR2 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 2 | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.2e-12 Score=140.19 Aligned_cols=133 Identities=18% Similarity=0.171 Sum_probs=89.9
Q ss_pred CCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHh-cCCCCCCCc
Q 038019 642 KPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIIS-GRASSDKSL 720 (866)
Q Consensus 642 ~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~t-g~~p~~~~~ 720 (866)
..|++..++...++.|||.++.++............++..|+|||+.....++.++|||||||+++|++| |..|+....
T Consensus 165 p~Nili~~~~~~kl~D~g~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~ 244 (304)
T cd05101 165 ARNVLVTENNVMKIADFGLARDVNNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIP 244 (304)
T ss_pred cceEEEcCCCcEEECCCccceecccccccccccCCCCCceeeCchhhccCCCCchhhHHHHHHHHHHHHcCCCCCcccCC
Confidence 3466666666778899999887764332211222345678999999998899999999999999999998 777775432
Q ss_pred hhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhcCcC
Q 038019 721 DMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLAGDIE 789 (866)
Q Consensus 721 ~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~~~~~ 789 (866)
. .++... ...+.... . +......+.+++.+|++.+|++||+|.||++.|+....
T Consensus 245 ~------~~~~~~-~~~~~~~~-----~---~~~~~~~~~~li~~cl~~~p~~Rps~~e~l~~l~~~~~ 298 (304)
T cd05101 245 V------EELFKL-LKEGHRMD-----K---PANCTNELYMMMRDCWHAIPSHRPTFKQLVEDLDRILT 298 (304)
T ss_pred H------HHHHHH-HHcCCcCC-----C---CCCCCHHHHHHHHHHcccChhhCCCHHHHHHHHHHHHH
Confidence 2 112211 11111100 0 11122345566779999999999999999999986543
|
Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 2 (FGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR2 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to |
| >cd05055 PTKc_PDGFR Catalytic domain of the Protein Tyrosine Kinases, Platelet Derived Growth Factor Receptors | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.3e-12 Score=139.83 Aligned_cols=129 Identities=19% Similarity=0.251 Sum_probs=88.7
Q ss_pred CcccCHHHHHHHhcCCccccccCCCCceeEEEe-ecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHh-cCCCCCCCc
Q 038019 643 PNIFGYAELRSATKDFNRSNKLGEGGYGPVYKV-TANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIIS-GRASSDKSL 720 (866)
Q Consensus 643 ~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~-~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~t-g~~p~~~~~ 720 (866)
.|++...+...++.|||.++.+....- .++.+ ..++..|+|||+...+.++.++|||||||+++||+| |+.|+....
T Consensus 170 ~Nil~~~~~~~~l~dfg~~~~~~~~~~-~~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslGvil~el~t~g~~p~~~~~ 248 (302)
T cd05055 170 RNVLLTHGKIVKICDFGLARDIMNDSN-YVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGILLWEIFSLGSNPYPGMP 248 (302)
T ss_pred ceEEEcCCCeEEECCCcccccccCCCc-eeecCCCCcccccCCHhhhccCCCCcHhHHHHHHHHHHHHHhCCCCCcCCCC
Confidence 466666666677899999987765432 12222 245678999999999999999999999999999998 999986543
Q ss_pred hhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhc
Q 038019 721 DMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLAG 786 (866)
Q Consensus 721 ~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~~ 786 (866)
..+. +.++ ...+.. +...... ..++.+++.+|++.+|++||++.||++.|+.
T Consensus 249 ~~~~--~~~~----~~~~~~-----~~~~~~~---~~~~~~li~~cl~~~p~~Rpt~~ell~~l~~ 300 (302)
T cd05055 249 VDSK--FYKL----IKEGYR-----MAQPEHA---PAEIYDIMKTCWDADPLKRPTFKQIVQLIGK 300 (302)
T ss_pred chHH--HHHH----HHcCCc-----CCCCCCC---CHHHHHHHHHHcCCCchhCcCHHHHHHHHHh
Confidence 2211 1111 111110 0011111 2346667779999999999999999999975
|
Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) subfamily; catalytic (c) domain. The PDGFR subfamily consists of PDGFR alpha, PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. PDGFR kinase domains are autoinhibited by their juxtamembrane regions containing tyr residues. The binding to their ligands leads to recept |
| >cd05089 PTKc_Tie1 Catalytic domain of the Protein Tyrosine Kinase, Tie1 | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.1e-12 Score=139.78 Aligned_cols=133 Identities=23% Similarity=0.224 Sum_probs=88.1
Q ss_pred CCCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHh-cCCCCCCC
Q 038019 641 SKPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIIS-GRASSDKS 719 (866)
Q Consensus 641 ~~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~t-g~~p~~~~ 719 (866)
...|++..++...++.|||.+...... ........+..|+|||+.....++.++|||||||+++||+| |+.|+...
T Consensus 146 kp~Nill~~~~~~kl~dfg~~~~~~~~---~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwSlG~il~el~t~g~~pf~~~ 222 (297)
T cd05089 146 AARNVLVGENLASKIADFGLSRGEEVY---VKKTMGRLPVRWMAIESLNYSVYTTKSDVWSFGVLLWEIVSLGGTPYCGM 222 (297)
T ss_pred CcceEEECCCCeEEECCcCCCccccce---eccCCCCcCccccCchhhccCCCCchhhHHHHHHHHHHHHcCCCCCCCCC
Confidence 334666666667788999987643211 00011123567999999988899999999999999999998 99998754
Q ss_pred chhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhcCcCCC
Q 038019 720 LDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLAGDIEVG 791 (866)
Q Consensus 720 ~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~~~~~~~ 791 (866)
...+ +.+ . ...+ ..+.... .....+.+++..|++.+|.+||+|.+|+++|+......
T Consensus 223 ~~~~---~~~---~-~~~~-----~~~~~~~---~~~~~~~~li~~~l~~~p~~Rp~~~~i~~~l~~~~~~~ 279 (297)
T cd05089 223 TCAE---LYE---K-LPQG-----YRMEKPR---NCDDEVYELMRQCWRDRPYERPPFAQISVQLSRMLEAR 279 (297)
T ss_pred CHHH---HHH---H-HhcC-----CCCCCCC---CCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHhh
Confidence 3221 111 1 1111 1111111 11234556777999999999999999999998665443
|
Protein Tyrosine Kinase (PTK) family; Tie1; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie1 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. No specific ligand has been identified for Tie1, although the angiopoietin, Ang-1, binds to Tie1 through integrins at high concentrations. |
| >cd07859 STKc_TDY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TDY Mitogen-Activated Protein Kinases from Plants | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.2e-12 Score=144.49 Aligned_cols=137 Identities=16% Similarity=0.168 Sum_probs=85.9
Q ss_pred CcccCHHHHHHHhcCCccccccCCCCc-eeEEEeecCCCCccCceeeec--CCCCchhHHHHHHHHHHHHHhcCCCCCCC
Q 038019 643 PNIFGYAELRSATKDFNRSNKLGEGGY-GPVYKVTANSYGYLAPEYAMR--GHLTEKADVFSFGVVALEIISGRASSDKS 719 (866)
Q Consensus 643 ~~~~~~~~~~~~~~dF~~~~~lg~g~~-g~vy~~~~gt~gY~aPE~~~~--~~~t~ksDVySfGvvLlEl~tg~~p~~~~ 719 (866)
.|++...+...++.|||.++....... ...+....||..|+|||++.+ ..++.++|||||||+++||+||+.|+...
T Consensus 132 ~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~~DvwSlGvvl~el~tg~~pf~~~ 211 (338)
T cd07859 132 KNILANADCKLKICDFGLARVAFNDTPTAIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAEVLTGKPLFPGK 211 (338)
T ss_pred HHeEECCCCcEEEccCccccccccccCccccccCCCCCCCcCCHHHHhccccccCchhHHHHHHHHHHHHHcCCCCCCCC
Confidence 367777777788999999886643222 222344579999999998865 68899999999999999999999998654
Q ss_pred chhhhhcHHHHHHHHh-----------hcCCcc---cccCCc----ccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHH
Q 038019 720 LDMEKIYLLEWAWNLH-----------ENNQSF---GLVDPT----LTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVV 781 (866)
Q Consensus 720 ~~~~~~~l~~~~~~~~-----------~~~~~~---~~~d~~----l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~ 781 (866)
..... ..++.... ...... +.+.+. ...........+.++...|++.+|++||++.||+
T Consensus 212 ~~~~~---~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~e~l 288 (338)
T cd07859 212 NVVHQ---LDLITDLLGTPSPETISRVRNEKARRYLSSMRKKQPVPFSQKFPNADPLALRLLERLLAFDPKDRPTAEEAL 288 (338)
T ss_pred ChHHH---HHHHHHHhCCCCHHHHHHhhhhhHHHHHHhhcccCCCchHHhcCCCChHHHHHHHHHcCcCcccCCCHHHHh
Confidence 32111 11111100 000000 000000 0000000112355677799999999999999997
Q ss_pred H
Q 038019 782 A 782 (866)
Q Consensus 782 ~ 782 (866)
+
T Consensus 289 ~ 289 (338)
T cd07859 289 A 289 (338)
T ss_pred c
Confidence 5
|
Serine/Threonine Kinases (STKs), Plant TDY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TDY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. Oryza sativa contains at least 17 MAPKs. There are two subtypes of plant MAPKs based on the conserved phos |
| >cd05095 PTKc_DDR2 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 2 | Back alignment and domain information |
|---|
Probab=99.29 E-value=4.1e-12 Score=137.50 Aligned_cols=136 Identities=19% Similarity=0.241 Sum_probs=87.9
Q ss_pred CCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHh--cCCCCCCC
Q 038019 642 KPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIIS--GRASSDKS 719 (866)
Q Consensus 642 ~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~t--g~~p~~~~ 719 (866)
..|++...+...++.|||.++.+..+..-.......++..|+|||+...+.++.++|||||||++|||+| |..|+...
T Consensus 158 p~Nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~el~~~~~~~p~~~~ 237 (296)
T cd05095 158 TRNCLVGKNYTIKIADFGMSRNLYSGDYYRIQGRAVLPIRWMSWESILLGKFTTASDVWAFGVTLWEILTLCKEQPYSQL 237 (296)
T ss_pred hheEEEcCCCCEEeccCcccccccCCcceeccCcCcCccccCCHHHHhcCCccchhhhhHHHHHHHHHHHhCCCCCcccc
Confidence 3466666666778899999887754432111111234678999999888899999999999999999999 66776543
Q ss_pred chhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHh
Q 038019 720 LDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLA 785 (866)
Q Consensus 720 ~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~ 785 (866)
...+ ....+......... ....|... .+...+.+++.+|++.+|++||+|.||++.|+
T Consensus 238 ~~~~---~~~~~~~~~~~~~~-~~~~~~~~----~~~~~~~~li~~cl~~~p~~Rp~~~~i~~~l~ 295 (296)
T cd05095 238 SDEQ---VIENTGEFFRDQGR-QVYLPKPA----LCPDSLYKLMLSCWRRNAKERPSFQEIHATLL 295 (296)
T ss_pred ChHH---HHHHHHHHHhhccc-cccCCCCC----CCCHHHHHHHHHHcCCCcccCCCHHHHHHHHh
Confidence 3221 12212111111111 11111111 12245667888999999999999999999886
|
Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 2 (DDR2) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR2 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR2 binds mostly to fibrillar collagens. More recently, it has been reported to also bind collagen X. DDR2 is widely expressed in many tissues wit |
| >cd05148 PTKc_Srm_Brk Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.6e-12 Score=137.73 Aligned_cols=128 Identities=23% Similarity=0.305 Sum_probs=91.6
Q ss_pred CCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHh-cCCCCCCCc
Q 038019 642 KPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIIS-GRASSDKSL 720 (866)
Q Consensus 642 ~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~t-g~~p~~~~~ 720 (866)
..|++..++...++.|||.+..+..+.+... +..++.+|+|||+...+.++.++||||||++++||++ |+.|+....
T Consensus 132 ~~nilv~~~~~~kl~d~g~~~~~~~~~~~~~--~~~~~~~~~~PE~~~~~~~~~~~DiwslG~~l~~l~~~g~~p~~~~~ 209 (261)
T cd05148 132 ARNILVGEDLVCKVADFGLARLIKEDVYLSS--DKKIPYKWTAPEAASHGTFSTKSDVWSFGILLYEMFTYGQVPYPGMN 209 (261)
T ss_pred cceEEEcCCceEEEccccchhhcCCcccccc--CCCCceEecCHHHHccCCCCchhhHHHHHHHHHHHHcCCCCCCCcCC
Confidence 3467777777788999999988765543221 3456778999999988899999999999999999998 898986543
Q ss_pred hhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhc
Q 038019 721 DMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLAG 786 (866)
Q Consensus 721 ~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~~ 786 (866)
..+ ...++.. +. .+.. +......+.+++.+|++.+|++||||+++.+.|+.
T Consensus 210 ~~~---~~~~~~~----~~-----~~~~---~~~~~~~~~~~i~~~l~~~p~~Rpt~~~l~~~L~~ 260 (261)
T cd05148 210 NHE---VYDQITA----GY-----RMPC---PAKCPQEIYKIMLECWAAEPEDRPSFKALREELDN 260 (261)
T ss_pred HHH---HHHHHHh----CC-----cCCC---CCCCCHHHHHHHHHHcCCCchhCcCHHHHHHHHhc
Confidence 221 2222221 10 0111 11222345677789999999999999999999974
|
Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase dom |
| >cd05115 PTKc_Zap-70 Catalytic domain of the Protein Tyrosine Kinase, Zeta-chain-associated protein of 70kDa | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.8e-12 Score=135.70 Aligned_cols=130 Identities=18% Similarity=0.212 Sum_probs=88.4
Q ss_pred CCcccCHHHHHHHhcCCccccccCCCCce-eEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHh-cCCCCCCC
Q 038019 642 KPNIFGYAELRSATKDFNRSNKLGEGGYG-PVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIIS-GRASSDKS 719 (866)
Q Consensus 642 ~~~~~~~~~~~~~~~dF~~~~~lg~g~~g-~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~t-g~~p~~~~ 719 (866)
..|++...+...++.|||.++.++.+.-. ....+..++..|+|||+.....++.++|||||||+++|+++ |+.|+...
T Consensus 123 p~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~ 202 (257)
T cd05115 123 ARNVLLVNQHYAKISDFGLSKALGADDSYYKARSAGKWPLKWYAPECINFRKFSSRSDVWSYGITMWEAFSYGQKPYKKM 202 (257)
T ss_pred hheEEEcCCCcEEeccCCccccccCCccceeccCCCCCCcccCCHHHHccCCCCchhhHHHHHHHHHHHhcCCCCCcCcC
Confidence 34666666667778999998877654311 11112234578999999988899999999999999999996 99998754
Q ss_pred chhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhc
Q 038019 720 LDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLAG 786 (866)
Q Consensus 720 ~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~~ 786 (866)
...+ .... ...+.. +.... .....+.++...||+.+|++||+|.+|.+.|+.
T Consensus 203 ~~~~---~~~~----~~~~~~-----~~~~~---~~~~~l~~li~~c~~~~~~~Rp~~~~i~~~l~~ 254 (257)
T cd05115 203 KGPE---VMSF----IEQGKR-----LDCPA---ECPPEMYALMKDCWIYKWEDRPNFAKVEERMRT 254 (257)
T ss_pred CHHH---HHHH----HHCCCC-----CCCCC---CCCHHHHHHHHHHcCCChhhCcCHHHHHHHHhh
Confidence 4322 1111 122211 11111 122344556779999999999999999999974
|
Protein Tyrosine Kinase (PTK) family; Zeta-chain-associated protein of 70kDa (Zap-70); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Zap-70 is a member of the Syk subfamily of kinases, which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Zap-70 binds the phosphorylated ITAM (immunoreceptor tyr activation motif) sequences of the activated TCR zeta-chain through its SH2 domains, leading to its pho |
| >KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.29 E-value=4.6e-12 Score=139.49 Aligned_cols=93 Identities=22% Similarity=0.378 Sum_probs=66.2
Q ss_pred cCCCCccCceeeecC--CCCchhHHHHHHHHHHHHHhcCCCCCCCchhhhhcHHHHHHHHhhcCCcccccCCcccccCHH
Q 038019 677 ANSYGYLAPEYAMRG--HLTEKADVFSFGVVALEIISGRASSDKSLDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDK 754 (866)
Q Consensus 677 ~gt~gY~aPE~~~~~--~~t~ksDVySfGvvLlEl~tg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~ 754 (866)
.||..|||||.+..| .|...+|||||||.+.||.|||+||......... +++-|. --+.|.++ .+
T Consensus 737 TGTLQYMAPEvIDqG~RGYG~aADIWS~GCT~vEMATGrPPF~ElgspqAA--------MFkVGm--yKvHP~iP---ee 803 (1226)
T KOG4279|consen 737 TGTLQYMAPEVIDQGPRGYGKAADIWSFGCTMVEMATGRPPFVELGSPQAA--------MFKVGM--YKVHPPIP---EE 803 (1226)
T ss_pred ccchhhhChHhhccCCcCCCchhhhhhccceeEeeccCCCCeeecCChhHh--------hhhhcc--eecCCCCc---HH
Confidence 588999999999865 6889999999999999999999999754432211 111111 11334443 33
Q ss_pred HHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 755 EALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 755 ~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
-..+.-...++|..++|.+||+++++++
T Consensus 804 lsaeak~FilrcFepd~~~R~sA~~LL~ 831 (1226)
T KOG4279|consen 804 LSAEAKNFILRCFEPDPCDRPSAKDLLQ 831 (1226)
T ss_pred HHHHHHHHHHHHcCCCcccCccHHHhcc
Confidence 3334444667999999999999998864
|
|
| >cd08528 STKc_Nek10 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 10 | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.5e-12 Score=136.93 Aligned_cols=126 Identities=19% Similarity=0.235 Sum_probs=88.7
Q ss_pred CcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCCchh
Q 038019 643 PNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSLDM 722 (866)
Q Consensus 643 ~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~~ 722 (866)
.|++...+...++.|||.+....... ......|+..|+|||+..++.++.++|||||||++|||++|+.|+......
T Consensus 143 ~nil~~~~~~~~l~dfg~~~~~~~~~---~~~~~~~~~~~~~Pe~~~~~~~~~~~Dv~slG~ll~~l~~g~~p~~~~~~~ 219 (269)
T cd08528 143 NNIMLGEDDKVTITDFGLAKQKQPES---KLTSVVGTILYSCPEIVKNEPYGEKADVWAFGCILYQMCTLQPPFYSTNML 219 (269)
T ss_pred HHEEECCCCcEEEecccceeeccccc---ccccccCcccCcChhhhcCCCCchHHHHHHHHHHHHHHHhCCCcccccCHH
Confidence 36666666677889999988766543 334456889999999999999999999999999999999999998643221
Q ss_pred hhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHh
Q 038019 723 EKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLA 785 (866)
Q Consensus 723 ~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~ 785 (866)
....... ++.. .|...... ...+.+++.+|++.+|++||+|.||..+++
T Consensus 220 ------~~~~~~~-~~~~----~~~~~~~~---~~~l~~li~~cl~~~p~~Rp~~~e~~~~~~ 268 (269)
T cd08528 220 ------SLATKIV-EAVY----EPLPEGMY---SEDVTDVITSCLTPDAEARPDIIQVSAMIS 268 (269)
T ss_pred ------HHHHHHh-hccC----CcCCcccC---CHHHHHHHHHHCCCCCccCCCHHHHHHHhc
Confidence 1111111 1111 11111111 234555667999999999999999999986
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 10 (Nek10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek10 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. No function has yet been ascribed to Nek10. The gene encoding Nek10 is a putative causative gene for breast cancer; it is located within a breast cancer susceptibility loci on chromosome 3p24. |
| >cd06649 PKc_MEK2 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 2 | Back alignment and domain information |
|---|
Probab=99.28 E-value=4.1e-12 Score=139.85 Aligned_cols=76 Identities=21% Similarity=0.269 Sum_probs=61.6
Q ss_pred CCCCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCC
Q 038019 640 GSKPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKS 719 (866)
Q Consensus 640 ~~~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~ 719 (866)
....|++...+...++.|||.++.+.... .....||..|+|||++.+..++.++|||||||+++||+||+.|+...
T Consensus 130 lkp~Nil~~~~~~~kl~Dfg~~~~~~~~~----~~~~~g~~~y~aPE~~~~~~~~~~~DiwslG~il~el~tg~~p~~~~ 205 (331)
T cd06649 130 VKPSNILVNSRGEIKLCDFGVSGQLIDSM----ANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVELAIGRYPIPPP 205 (331)
T ss_pred CChhhEEEcCCCcEEEccCcccccccccc----cccCCCCcCcCCHhHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCC
Confidence 33346777777778899999988775432 12346899999999999999999999999999999999999999653
|
Protein kinases (PKs), MAP/ERK Kinase (MEK) 2 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK2 is a dual-specificity PK that phosphorylates and activates the downst |
| >cd05040 PTKc_Ack_like Catalytic domain of the Protein Tyrosine Kinase, Activated Cdc42-associated kinase | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.3e-12 Score=136.19 Aligned_cols=128 Identities=20% Similarity=0.283 Sum_probs=90.1
Q ss_pred CCcccCHHHHHHHhcCCccccccCCCCceeEEE---eecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHh-cCCCCC
Q 038019 642 KPNIFGYAELRSATKDFNRSNKLGEGGYGPVYK---VTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIIS-GRASSD 717 (866)
Q Consensus 642 ~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~---~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~t-g~~p~~ 717 (866)
..|++...+...++.|||.++.++.+. ..|. ...++.+|+|||+.....++.++|||||||+++||+| |+.|++
T Consensus 125 p~nil~~~~~~~kl~dfg~~~~~~~~~--~~~~~~~~~~~~~~y~~pE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~ 202 (257)
T cd05040 125 ARNILLASDDKVKIGDFGLMRALPQNE--DHYVMEEHLKVPFAWCAPESLRTRTFSHASDVWMFGVTLWEMFTYGEEPWA 202 (257)
T ss_pred cccEEEecCCEEEeccccccccccccc--cceecccCCCCCceecCHHHhcccCcCchhhhHHHHHHHHHHHhCCCCCCC
Confidence 346677666777899999999886532 1222 2357789999999999999999999999999999999 999986
Q ss_pred CCchhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHh
Q 038019 718 KSLDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLA 785 (866)
Q Consensus 718 ~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~ 785 (866)
.....+ +...... .... . ..+......+.+++.+|++.+|++||++.+|++.|.
T Consensus 203 ~~~~~~---~~~~~~~---~~~~-------~-~~~~~~~~~~~~li~~~l~~~p~~Rps~~~~~~~l~ 256 (257)
T cd05040 203 GLSGSQ---ILKKIDK---EGER-------L-ERPEACPQDIYNVMLQCWAHNPADRPTFAALREFLP 256 (257)
T ss_pred CCCHHH---HHHHHHh---cCCc-------C-CCCccCCHHHHHHHHHHCCCCcccCCCHHHHHHHhc
Confidence 543222 2221111 1100 0 001112235666777999999999999999999885
|
Protein Tyrosine Kinase (PTK) family; Activated Cdc42-associated kinase (Ack) subfamily; catalytic (c) domain. Ack subfamily members include Ack1, thirty-eight-negative kinase 1 (Tnk1), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ack subfamily members are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal catalytic domain, an SH3 domain, a Cdc42-binding CRIB domain, and a proline-rich region. They are mainly expressed in brain and skeletal tissues and are involved in the regulation of cell adhesion and growth, receptor degradation, and axonal guidance. Ack1 is also associated with and |
| >cd05070 PTKc_Fyn_Yrk Catalytic domain of the Protein Tyrosine Kinases, Fyn and Yrk | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.7e-12 Score=137.62 Aligned_cols=129 Identities=22% Similarity=0.315 Sum_probs=89.4
Q ss_pred CCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHh-cCCCCCCCc
Q 038019 642 KPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIIS-GRASSDKSL 720 (866)
Q Consensus 642 ~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~t-g~~p~~~~~ 720 (866)
..|++..++...++.|||.++.+...... ...+..++..|+|||+.....++.++||||||++++||++ |+.|+....
T Consensus 130 p~Nili~~~~~~~l~dfg~~~~~~~~~~~-~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~~g~~p~~~~~ 208 (260)
T cd05070 130 SANILVGDGLVCKIADFGLARLIEDNEYT-ARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELVTKGRVPYPGMN 208 (260)
T ss_pred cceEEEeCCceEEeCCceeeeeccCcccc-cccCCCCCccccChHHHhcCCCcchhhhHHHHHHHHHHHhcCCCCCCCCC
Confidence 34666666666778999999877654422 1223345678999999988999999999999999999999 888886533
Q ss_pred hhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhc
Q 038019 721 DMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLAG 786 (866)
Q Consensus 721 ~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~~ 786 (866)
.. ...++.. .+. .+.. +......+.+++.+|++.+|++||||.++.+.|+.
T Consensus 209 ~~---~~~~~~~----~~~-----~~~~---~~~~~~~~~~li~~~l~~~p~~Rpt~~~l~~~l~~ 259 (260)
T cd05070 209 NR---EVLEQVE----RGY-----RMPC---PQDCPISLHELMLQCWKKDPEERPTFEYLQSFLED 259 (260)
T ss_pred HH---HHHHHHH----cCC-----CCCC---CCcCCHHHHHHHHHHcccCcccCcCHHHHHHHHhc
Confidence 22 1222211 110 0111 11122346667789999999999999999999874
|
Protein Tyrosine Kinase (PTK) family; Fyn and Yrk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fyn and Yrk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that r |
| >cd07848 STKc_CDKL5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase Like 5 | Back alignment and domain information |
|---|
Probab=99.28 E-value=4.4e-12 Score=136.53 Aligned_cols=138 Identities=15% Similarity=0.190 Sum_probs=88.1
Q ss_pred cccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCCchhh
Q 038019 644 NIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSLDME 723 (866)
Q Consensus 644 ~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~~~ 723 (866)
|++...+...++.|||.+..+..+.. ..+....||..|+|||+..+..++.++|||||||+++||++|+.|+......+
T Consensus 130 Nill~~~~~~kl~Dfg~~~~~~~~~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslGvil~el~~g~~pf~~~~~~~ 208 (287)
T cd07848 130 NLLISHNDVLKLCDFGFARNLSEGSN-ANYTEYVATRWYRSPELLLGAPYGKAVDMWSVGCILGELSDGQPLFPGESEID 208 (287)
T ss_pred HEEEcCCCcEEEeeccCccccccccc-ccccccccccccCCcHHHcCCCCCCchhHHhHHHHHHHHHhCCCCCCCCCHHH
Confidence 56666666778899999988765432 22334568999999999998899999999999999999999999987544322
Q ss_pred hhcHHHHHH---------HHhhcCCcccccCCcccc-------cCHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 724 KIYLLEWAW---------NLHENNQSFGLVDPTLTE-------FNDKEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 724 ~~~l~~~~~---------~~~~~~~~~~~~d~~l~~-------~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
......... .............|.... ........+.++...|++.+|++|||+.|+++
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dll~~~L~~~P~~R~s~~~~l~ 283 (287)
T cd07848 209 QLFTIQKVLGPLPAEQMKLFYSNPRFHGLRFPAVNHPQSLERRYLGILSGVLLDLMKNLLKLNPTDRYLTEQCLN 283 (287)
T ss_pred HHHHHHHhhCCCCHHHHHhhhccchhcccccCcccCcccHHHhhhcccCHHHHHHHHHHccCCcccCCCHHHHhc
Confidence 111111110 000000000010111100 00011234667788999999999999999874
|
Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 5 (CDKL5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Mutations in the gene encoding CDKL5, previously called STK9, are associated with early onset epilepsy and severe mental retardation [X-linked infantile spasm syndrome (ISSX) or West syndrome]. In addition, CDKL5 mutations also sometimes |
| >cd05107 PTKc_PDGFR_beta Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor beta | Back alignment and domain information |
|---|
Probab=99.27 E-value=2e-12 Score=145.40 Aligned_cols=135 Identities=17% Similarity=0.183 Sum_probs=90.2
Q ss_pred CCCCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHh-cCCCCCC
Q 038019 640 GSKPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIIS-GRASSDK 718 (866)
Q Consensus 640 ~~~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~t-g~~p~~~ 718 (866)
....|++..++...++.|||.++.+.............++..|||||+.....++.++|||||||+++||++ |+.|+..
T Consensus 265 lkp~NiLl~~~~~~kL~DfGla~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslGvil~e~l~~g~~P~~~ 344 (401)
T cd05107 265 LAARNVLICEGKLVKICDFGLARDIMRDSNYISKGSTFLPLKWMAPESIFNNLYTTLSDVWSFGILLWEIFTLGGTPYPE 344 (401)
T ss_pred CCcceEEEeCCCEEEEEecCcceecccccccccCCCcCCCCceeChHHhcCCCCCcHhHHHHHHHHHHHHHHcCCCCCCC
Confidence 334466666666678899999887654321111112346788999999998899999999999999999998 8888864
Q ss_pred CchhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhcCc
Q 038019 719 SLDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLAGDI 788 (866)
Q Consensus 719 ~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~~~~ 788 (866)
....+. .......+. .+..... ....+.+++..||+.+|++||+|+||++.|+..+
T Consensus 345 ~~~~~~------~~~~~~~~~-----~~~~p~~---~~~~l~~li~~cl~~~P~~RPs~~ell~~L~~~~ 400 (401)
T cd05107 345 LPMNEQ------FYNAIKRGY-----RMAKPAH---ASDEIYEIMQKCWEEKFEIRPDFSQLVHLVGDLL 400 (401)
T ss_pred CCchHH------HHHHHHcCC-----CCCCCCC---CCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHh
Confidence 332111 111111111 0111111 1234556667999999999999999999998643
|
Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) beta; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR beta is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR beta forms homodimers or heterodimers with PDGFR alpha, depending on the nature of the PDGF ligand. PDGF-BB and PDGF-D |
| >KOG0194 consensus Protein tyrosine kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.4e-12 Score=144.11 Aligned_cols=127 Identities=25% Similarity=0.275 Sum_probs=88.1
Q ss_pred cccCHHHHHHHhcCCccccccCCCCceeEEEeec----CCCCccCceeeecCCCCchhHHHHHHHHHHHHHh-cCCCCCC
Q 038019 644 NIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTA----NSYGYLAPEYAMRGHLTEKADVFSFGVVALEIIS-GRASSDK 718 (866)
Q Consensus 644 ~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~----gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~t-g~~p~~~ 718 (866)
|.+....-..++.|||+++. |..|.... -.+.|+|||.+.++.+|.|+|||||||++||+++ |..|+..
T Consensus 292 NcL~~~~~~vKISDFGLs~~------~~~~~~~~~~~klPirWLAPEtl~~~~~s~kTDV~sfGV~~~Eif~~g~~Py~g 365 (474)
T KOG0194|consen 292 NCLYSKKGVVKISDFGLSRA------GSQYVMKKFLKKLPIRWLAPETLNTGIFSFKTDVWSFGVLLWEIFENGAEPYPG 365 (474)
T ss_pred HheecCCCeEEeCccccccC------CcceeeccccccCcceecChhhhccCccccccchhheeeeEEeeeccCCCCCCC
Confidence 33433434478999999763 33555443 4479999999999999999999999999999999 8888876
Q ss_pred CchhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhcCcCC
Q 038019 719 SLDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLAGDIEV 790 (866)
Q Consensus 719 ~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~~~~~~ 790 (866)
... ..+..|+.. ++.- .......++++..++ -.||+.+|++||+|.+|++.|+.....
T Consensus 366 ~~~---~~v~~kI~~---~~~r-----~~~~~~~p~~~~~~~---~~c~~~~p~~R~tm~~i~~~l~~~~~~ 423 (474)
T KOG0194|consen 366 MKN---YEVKAKIVK---NGYR-----MPIPSKTPKELAKVM---KQCWKKDPEDRPTMSTIKKKLEALEKK 423 (474)
T ss_pred CCH---HHHHHHHHh---cCcc-----CCCCCCCHHHHHHHH---HHhccCChhhccCHHHHHHHHHHHHhc
Confidence 443 234444421 1110 011123344444444 499999999999999999999865444
|
|
| >PHA03207 serine/threonine kinase US3; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=5.2e-12 Score=142.36 Aligned_cols=78 Identities=21% Similarity=0.169 Sum_probs=64.5
Q ss_pred CCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCC
Q 038019 642 KPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKS 719 (866)
Q Consensus 642 ~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~ 719 (866)
..|++...+...++.|||.++.+..+.......+..||..|+|||++....++.++|||||||+++||++|+.|+...
T Consensus 213 p~Nill~~~~~~~l~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslGvil~el~~g~~pf~~~ 290 (392)
T PHA03207 213 TENIFLDEPENAVLGDFGAACKLDAHPDTPQCYGWSGTLETNSPELLALDPYCAKTDIWSAGLVLFEMSVKNVTLFGK 290 (392)
T ss_pred HHHEEEcCCCCEEEccCccccccCcccccccccccccccCccCHhHhcCCCCCchhhHHHHHHHHHHHHHCCCCCCCC
Confidence 346777666778899999998887654444444567999999999999999999999999999999999999998653
|
|
| >cd00192 PTKc Catalytic domain of Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Probab=99.27 E-value=3.7e-12 Score=134.62 Aligned_cols=131 Identities=24% Similarity=0.269 Sum_probs=92.7
Q ss_pred CCCCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHh-cCCCCCC
Q 038019 640 GSKPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIIS-GRASSDK 718 (866)
Q Consensus 640 ~~~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~t-g~~p~~~ 718 (866)
....|++..++...++.|||.++.+.............++..|+|||......++.++||||+||+++||++ |+.|+..
T Consensus 131 i~p~nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~ 210 (262)
T cd00192 131 LAARNCLVGEDLVVKISDFGLSRDVYDDDYYRKKTGGKLPIRWMAPESLKDGIFTSKSDVWSFGVLLWEIFTLGATPYPG 210 (262)
T ss_pred cCcceEEECCCCcEEEcccccccccccccccccccCCCcCccccCHHHhccCCcchhhccHHHHHHHHHHHhcCCCCCCC
Confidence 334477777777888999999988876542222334467889999999998899999999999999999999 6999875
Q ss_pred CchhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHh
Q 038019 719 SLDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLA 785 (866)
Q Consensus 719 ~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~ 785 (866)
.... .+.+.+. .+.. ... +......+.+++..|++.+|++||++.|+++.|+
T Consensus 211 ~~~~---~~~~~~~----~~~~-----~~~---~~~~~~~~~~li~~~l~~~p~~Rps~~~l~~~l~ 262 (262)
T cd00192 211 LSNE---EVLEYLR----KGYR-----LPK---PEYCPDELYELMLSCWQLDPEDRPTFSELVERLE 262 (262)
T ss_pred CCHH---HHHHHHH----cCCC-----CCC---CccCChHHHHHHHHHccCCcccCcCHHHHHHhhC
Confidence 4321 1222211 1111 011 1111345666777999999999999999999874
|
Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligan |
| >cd08529 STKc_FA2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2 and similar domains | Back alignment and domain information |
|---|
Probab=99.27 E-value=2e-12 Score=136.53 Aligned_cols=124 Identities=19% Similarity=0.209 Sum_probs=87.3
Q ss_pred CCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCCch
Q 038019 642 KPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSLD 721 (866)
Q Consensus 642 ~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~ 721 (866)
..|++...+...++.|||.++.+..... ......|+..|+|||+..++.++.++|||||||+++||+||+.|+.....
T Consensus 129 ~~nili~~~~~~~l~df~~~~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~ 206 (256)
T cd08529 129 SLNLFLDAYDNVKIGDLGVAKLLSDNTN--FANTIVGTPYYLSPELCEDKPYNEKSDVWALGVVLYECCTGKHPFDANNQ 206 (256)
T ss_pred cceEEEeCCCCEEEcccccceeccCccc--hhhccccCccccCHHHhcCCCCCCccchHHHHHHHHHHHhCCCCCCCCCH
Confidence 3466666666778899998887765431 12334678999999999999999999999999999999999999875432
Q ss_pred hhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 722 MEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 722 ~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
. ....++ ..+.. +.+. ......+.+++.+|++.+|++||+|.++++
T Consensus 207 ~---~~~~~~----~~~~~-----~~~~---~~~~~~~~~~i~~~l~~~p~~Rp~~~~ll~ 252 (256)
T cd08529 207 G---ALILKI----IRGVF-----PPVS---QMYSQQLAQLIDQCLTKDYRQRPDTFQLLR 252 (256)
T ss_pred H---HHHHHH----HcCCC-----CCCc---cccCHHHHHHHHHHccCCcccCcCHHHHhh
Confidence 1 122111 11111 1111 112234666777999999999999999976
|
Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii FA2-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii FA2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes FA2 and CNK4. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii FA2 was discovered in a genetic screen for deflagellation-defective mutants. It is essential for basal-body/centriole-associated microtubule severing, and plays a role in cell cyc |
| >cd05059 PTKc_Tec_like Catalytic domain of Tec-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Probab=99.27 E-value=3.3e-12 Score=135.02 Aligned_cols=127 Identities=20% Similarity=0.275 Sum_probs=87.6
Q ss_pred CcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHh-cCCCCCCCch
Q 038019 643 PNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIIS-GRASSDKSLD 721 (866)
Q Consensus 643 ~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~t-g~~p~~~~~~ 721 (866)
.|++...+...++.|||.++.+..+.. ....+..++.+|+|||+...+.++.++|||||||+++|++| |+.|++....
T Consensus 129 ~ni~i~~~~~~kl~dfg~~~~~~~~~~-~~~~~~~~~~~y~~Pe~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~ 207 (256)
T cd05059 129 RNCLVGEDNVVKVSDFGLARYVLDDQY-TSSQGTKFPVKWAPPEVFDYSRFSSKSDVWSFGVLMWEVFSEGKMPYERFSN 207 (256)
T ss_pred hhEEECCCCcEEECCcccceecccccc-cccCCCCCCccccCHHHhccCCCCchhhHHHHHHHHHHHhccCCCCCCCCCH
Confidence 466666666778899998887764332 12223334568999999999999999999999999999999 7888865432
Q ss_pred hhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHh
Q 038019 722 MEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLA 785 (866)
Q Consensus 722 ~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~ 785 (866)
.+ ..+.+ ..+ .++.... .....+.+++.+|++.+|++||+|.||+++|.
T Consensus 208 ~~---~~~~~----~~~-----~~~~~~~---~~~~~~~~li~~cl~~~p~~Rpt~~~~l~~l~ 256 (256)
T cd05059 208 SE---VVESV----SAG-----YRLYRPK---LAPTEVYTIMYSCWHEKPEDRPAFKKLLSQLT 256 (256)
T ss_pred HH---HHHHH----HcC-----CcCCCCC---CCCHHHHHHHHHHhcCChhhCcCHHHHHHHhC
Confidence 21 11111 111 1111111 12335667888999999999999999999873
|
Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows |
| >cd08229 STKc_Nek7 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 7 | Back alignment and domain information |
|---|
Probab=99.26 E-value=7.3e-12 Score=133.16 Aligned_cols=130 Identities=16% Similarity=0.160 Sum_probs=88.5
Q ss_pred cccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCCchhh
Q 038019 644 NIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSLDME 723 (866)
Q Consensus 644 ~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~~~ 723 (866)
|++...+...++.|||.+..+.... .......|+.+|+|||+..+..++.++||||||++++||++|+.|+.....
T Consensus 136 nili~~~~~~~l~dfg~~~~~~~~~--~~~~~~~~~~~~~ape~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~-- 211 (267)
T cd08229 136 NVFITATGVVKLGDLGLGRFFSSKT--TAAHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGDKM-- 211 (267)
T ss_pred HEEEcCCCCEEECcchhhhccccCC--cccccccCCcCccCHHHhcCCCccchhhHHHHHHHHHHHHhCCCCcccccc--
Confidence 5555555567788999887775443 223345688999999999988999999999999999999999999864221
Q ss_pred hhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhcC
Q 038019 724 KIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLAGD 787 (866)
Q Consensus 724 ~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~~~ 787 (866)
...++.... .+...+.+.. ......+.+++.+|++.+|++||||.+|.++++..
T Consensus 212 --~~~~~~~~~------~~~~~~~~~~--~~~~~~~~~li~~~l~~~p~~Rpt~~~i~~~~~~~ 265 (267)
T cd08229 212 --NLYSLCKKI------EQCDYPPLPS--DHYSEELRQLVNMCINPDPEKRPDITYVYDVAKRM 265 (267)
T ss_pred --hHHHHhhhh------hcCCCCCCCc--ccccHHHHHHHHHhcCCCcccCCCHHHHHHHHhhh
Confidence 111111111 1111122211 11223455566799999999999999999998753
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 7 (Nek7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek7 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek7 is required for mitotic spindle formation and cytokinesis. It is enriched in the centrosome and is critical for microtubule nucleation. Nek7 is activated by Nek9 during mitosis, and may regulate the p70 ribosomal S6 kinase. |
| >cd05098 PTKc_FGFR1 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 1 | Back alignment and domain information |
|---|
Probab=99.26 E-value=4.5e-12 Score=137.92 Aligned_cols=130 Identities=20% Similarity=0.243 Sum_probs=87.3
Q ss_pred cccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHh-cCCCCCCCchh
Q 038019 644 NIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIIS-GRASSDKSLDM 722 (866)
Q Consensus 644 ~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~t-g~~p~~~~~~~ 722 (866)
|++...+...++.|||.++.+....+.....+..++..|||||+..++.++.++|||||||+++||++ |+.|+......
T Consensus 170 Nill~~~~~~kL~dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~~~g~~p~~~~~~~ 249 (307)
T cd05098 170 NVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVE 249 (307)
T ss_pred heEEcCCCcEEECCCcccccccccchhhccccCCCccceeChHHhccCCCCcHHHHHHHHHHHHHHHcCCCCCCCcCCHH
Confidence 55655556678899998877654332222222234568999999988899999999999999999998 88887643221
Q ss_pred hhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhcCc
Q 038019 723 EKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLAGDI 788 (866)
Q Consensus 723 ~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~~~~ 788 (866)
+ +.+ ....+... +.+......+.+++..|++.+|++||+|.+|++.|+..+
T Consensus 250 ~---~~~----~~~~~~~~--------~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~~l~~~~ 300 (307)
T cd05098 250 E---LFK----LLKEGHRM--------DKPSNCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDRIL 300 (307)
T ss_pred H---HHH----HHHcCCCC--------CCCCcCCHHHHHHHHHHcccChhhCcCHHHHHHHHHHHH
Confidence 1 111 11111110 111112234556777999999999999999999998644
|
Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 1 (FGFR1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR1 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to |
| >cd05099 PTKc_FGFR4 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 4 | Back alignment and domain information |
|---|
Probab=99.26 E-value=4.6e-12 Score=138.32 Aligned_cols=132 Identities=19% Similarity=0.245 Sum_probs=89.1
Q ss_pred CCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHh-cCCCCCCCc
Q 038019 642 KPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIIS-GRASSDKSL 720 (866)
Q Consensus 642 ~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~t-g~~p~~~~~ 720 (866)
..|++...+...++.|||.++.+.............++..|||||+...+.++.++|||||||+++||+| |+.|+....
T Consensus 162 p~Nill~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslG~~l~el~~~g~~p~~~~~ 241 (314)
T cd05099 162 ARNVLVTEDNVMKIADFGLARGVHDIDYYKKTSNGRLPVKWMAPEALFDRVYTHQSDVWSFGILMWEIFTLGGSPYPGIP 241 (314)
T ss_pred ceeEEEcCCCcEEEccccccccccccccccccccCCCCccccCHHHHccCCcCccchhhHHHHHHHHHHhCCCCCCCCCC
Confidence 3466766666778899999987754322111111124467999999998999999999999999999999 888886433
Q ss_pred hhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhcCc
Q 038019 721 DMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLAGDI 788 (866)
Q Consensus 721 ~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~~~~ 788 (866)
..+ +.+ ....+...+ . +......+.+++.+|++.+|++||++.||++.|+...
T Consensus 242 ~~~---~~~----~~~~~~~~~-----~---~~~~~~~l~~li~~cl~~~p~~Rps~~~ll~~l~~~~ 294 (314)
T cd05099 242 VEE---LFK----LLREGHRMD-----K---PSNCTHELYMLMRECWHAVPTQRPTFKQLVEALDKVL 294 (314)
T ss_pred HHH---HHH----HHHcCCCCC-----C---CCCCCHHHHHHHHHHcCCCcccCcCHHHHHHHHHHHH
Confidence 211 221 111111111 1 1112234556777999999999999999999998643
|
Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 4 (FGFR4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR4 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to |
| >KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.3e-13 Score=147.39 Aligned_cols=196 Identities=26% Similarity=0.397 Sum_probs=117.4
Q ss_pred CCCCCCEEEccCCCCCCCCCccccCCCCcCEEeccCCcCCCCCCccccCCCCCCEeeccCCCCCCCCchhhcCCCCccEE
Q 038019 87 TLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKELTVLAFGTNNFSGALPPELGNLAKLEQL 166 (866)
Q Consensus 87 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 166 (866)
.+..-...||+.|++. .+|..+..+..|+.|.|.+|.|. .+|..+++|..|.+|||+.|+++ .+|..++.|+ |+.|
T Consensus 73 ~ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvl 148 (722)
T KOG0532|consen 73 DLTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVL 148 (722)
T ss_pred cccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeE
Confidence 3455566677777776 56766777777777777777776 66777777777777777777776 5566666554 5666
Q ss_pred EeecCCCCCCChhhhhcCcCCCEEEecCCCCCCCCcccccCCCCCCeEEccCCCCCCCCchhhcCCCCCCEEEccCccCC
Q 038019 167 YIDSCGAGGEIPSTFAKLRNMQTLWASDNPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLESLQMSDIYNV 246 (866)
Q Consensus 167 ~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~n~~~ 246 (866)
.+++|+++ .+|..++.+..|..|+.+.|.+. .+|..++++.+|+.|.+..|++. .+|..+..
T Consensus 149 i~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~--------------- 210 (722)
T KOG0532|consen 149 IVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCS--------------- 210 (722)
T ss_pred EEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhC---------------
Confidence 66665554 34444555555555555555554 34445555555555555555554 23333321
Q ss_pred CCCchhhhcCCCCCceeccCcccccCCCcccCCCCCcCEEeeecCcCcccCCcccCC---CCCCcEEECcCCC
Q 038019 247 SSSLDFVMSLKNLTDLSLRNALITGTIPFGIGELQMLQILDLSFNNLTGQIPATLFN---IDSLEYLFLGNNS 316 (866)
Q Consensus 247 ~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~---l~~L~~L~L~~N~ 316 (866)
-.|..||++.|+++ .+|..|.+|+.|++|.|.+|.+. ..|..+.. ..-.++|+..-++
T Consensus 211 ----------LpLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 211 ----------LPLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred ----------CceeeeecccCcee-ecchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhcc
Confidence 13555666666666 56777777777777777777776 34444432 2234556665554
|
|
| >PLN00034 mitogen-activated protein kinase kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=4.8e-12 Score=140.60 Aligned_cols=126 Identities=17% Similarity=0.188 Sum_probs=82.0
Q ss_pred CcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeec-----CCCCchhHHHHHHHHHHHHHhcCCCCC
Q 038019 643 PNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMR-----GHLTEKADVFSFGVVALEIISGRASSD 717 (866)
Q Consensus 643 ~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~-----~~~t~ksDVySfGvvLlEl~tg~~p~~ 717 (866)
.|++..++...++.|||.++.+.... .......||..|+|||++.. ...+.++|||||||++|||++|+.|+.
T Consensus 197 ~NIll~~~~~~kL~DfG~~~~~~~~~--~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DvwslGvil~el~~g~~pf~ 274 (353)
T PLN00034 197 SNLLINSAKNVKIADFGVSRILAQTM--DPCNSSVGTIAYMSPERINTDLNHGAYDGYAGDIWSLGVSILEFYLGRFPFG 274 (353)
T ss_pred HHEEEcCCCCEEEcccccceeccccc--ccccccccCccccCccccccccccCcCCCcchhHHHHHHHHHHHHhCCCCCC
Confidence 36776667778899999988775432 12234578999999998743 234569999999999999999999987
Q ss_pred CCchhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 718 KSLDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 718 ~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
.....+...+. ..... . ..+.... .....+.++...|++.+|++||++.||++
T Consensus 275 ~~~~~~~~~~~---~~~~~-~-----~~~~~~~---~~~~~l~~li~~~l~~~P~~Rpt~~ell~ 327 (353)
T PLN00034 275 VGRQGDWASLM---CAICM-S-----QPPEAPA---TASREFRHFISCCLQREPAKRWSAMQLLQ 327 (353)
T ss_pred CCCCccHHHHH---HHHhc-c-----CCCCCCC---ccCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence 33221111111 11000 0 0011111 11234555666999999999999999986
|
|
| >cd06624 STKc_ASK Catalytic domain of the Protein Serine/Threonine Kinase, Apoptosis signal-regulating kinase | Back alignment and domain information |
|---|
Probab=99.26 E-value=7.5e-12 Score=133.22 Aligned_cols=124 Identities=18% Similarity=0.284 Sum_probs=78.6
Q ss_pred cccCHH-HHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCC--CCchhHHHHHHHHHHHHHhcCCCCCCCc
Q 038019 644 NIFGYA-ELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGH--LTEKADVFSFGVVALEIISGRASSDKSL 720 (866)
Q Consensus 644 ~~~~~~-~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~--~t~ksDVySfGvvLlEl~tg~~p~~~~~ 720 (866)
|++... ....++.|||.++.++.... ......|+..|+|||+..... ++.++|||||||+++||++|+.|+....
T Consensus 138 nil~~~~~~~~~l~dfg~~~~~~~~~~--~~~~~~~~~~~~aPE~~~~~~~~~~~~~Dv~slGvvl~~l~~g~~p~~~~~ 215 (268)
T cd06624 138 NVLVNTYSGVVKISDFGTSKRLAGINP--CTETFTGTLQYMAPEVIDKGPRGYGAPADIWSLGCTIVEMATGKPPFIELG 215 (268)
T ss_pred HEEEcCCCCeEEEecchhheecccCCC--ccccCCCCccccChhhhccccccCCchhhhHHHHHHHHHHHhCCCCCcccc
Confidence 444433 33556788888776653321 122335789999999986543 7899999999999999999999986432
Q ss_pred hhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 721 DMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 721 ~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
... ...|...... ..+.+.. .....+..++.+|++.+|++||+|.||+.
T Consensus 216 ~~~---~~~~~~~~~~-------~~~~~~~---~~~~~~~~li~~~l~~~p~~Rpt~~~ll~ 264 (268)
T cd06624 216 EPQ---AAMFKVGMFK-------IHPEIPE---SLSAEAKNFILRCFEPDPDKRASAHDLLQ 264 (268)
T ss_pred Chh---hhHhhhhhhc-------cCCCCCc---ccCHHHHHHHHHHcCCCchhCCCHHHHHh
Confidence 111 1111111110 1122211 11233455667999999999999999875
|
Serine/threonine kinases (STKs), Apoptosis signal-regulating kinase (ASK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ASK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Subfamily members are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1, ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. ASK1 (also called MAPKKK5) functions in the c-Jun N-terminal kina |
| >cd08228 STKc_Nek6 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 6 | Back alignment and domain information |
|---|
Probab=99.25 E-value=7.5e-12 Score=133.09 Aligned_cols=129 Identities=16% Similarity=0.203 Sum_probs=87.6
Q ss_pred cccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCCchhh
Q 038019 644 NIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSLDME 723 (866)
Q Consensus 644 ~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~~~ 723 (866)
|++...+...++.|||.+..+..... ......|+..|+|||+..+..++.++|||||||++|||+||+.|+....
T Consensus 136 nil~~~~~~~~l~d~g~~~~~~~~~~--~~~~~~~~~~~~aPE~~~~~~~~~~~Di~slG~~l~el~~g~~p~~~~~--- 210 (267)
T cd08228 136 NVFITATGVVKLGDLGLGRFFSSKTT--AAHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGDK--- 210 (267)
T ss_pred HEEEcCCCCEEECccccceeccchhH--HHhcCCCCccccChhhhccCCCCchhhHHHHHHHHHHHhcCCCCCcccc---
Confidence 55655555667889998877654321 1122357889999999998889999999999999999999999985422
Q ss_pred hhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhc
Q 038019 724 KIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLAG 786 (866)
Q Consensus 724 ~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~~ 786 (866)
....++.... .. ...|... .......+.+++.+||+.+|++||++.+|++.|++
T Consensus 211 -~~~~~~~~~~-~~-----~~~~~~~--~~~~~~~~~~li~~cl~~~p~~Rp~~~~vl~~~~~ 264 (267)
T cd08228 211 -MNLFSLCQKI-EQ-----CDYPPLP--TEHYSEKLRELVSMCIYPDPDQRPDIGYVHQIAKQ 264 (267)
T ss_pred -ccHHHHHHHH-hc-----CCCCCCC--hhhcCHHHHHHHHHHCCCCcccCcCHHHHHHHHHH
Confidence 1122222211 11 1112111 11122445667779999999999999999999985
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 is required for the transition from metaphase to anaphase. It also plays important roles in mitotic spindle formation and cytokinesis. Activated by Nek9 during mitosis, Nek6 phosphorylates Eg5, a kinesin that is important for spindle bipolarity. Nek6 localizes to spindle microtubules during metaphase |
| >cd05036 PTKc_ALK_LTK Catalytic domain of the Protein Tyrosine Kinases, Anaplastic Lymphoma Kinase and Leukocyte Tyrosine Kinase | Back alignment and domain information |
|---|
Probab=99.25 E-value=5.2e-12 Score=135.22 Aligned_cols=119 Identities=22% Similarity=0.301 Sum_probs=79.9
Q ss_pred HHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHh-cCCCCCCCchhhhhcHHHH
Q 038019 652 RSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIIS-GRASSDKSLDMEKIYLLEW 730 (866)
Q Consensus 652 ~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~t-g~~p~~~~~~~~~~~l~~~ 730 (866)
..++.|||.++.+....+-........+..|+|||++.++.++.++|||||||+++||+| |+.|++.....+ +.+.
T Consensus 157 ~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslG~il~el~~~g~~pf~~~~~~~---~~~~ 233 (277)
T cd05036 157 VAKIADFGMARDIYRASYYRKGGRAMLPIKWMPPEAFLDGIFTSKTDVWSFGVLLWEIFSLGYMPYPGRTNQE---VMEF 233 (277)
T ss_pred ceEeccCccccccCCccceecCCCCCccHhhCCHHHHhcCCcCchhHHHHHHHHHHHHHcCCCCCCCCCCHHH---HHHH
Confidence 457889999887743322110001123568999999999999999999999999999997 999987543322 1111
Q ss_pred HHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHh
Q 038019 731 AWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLA 785 (866)
Q Consensus 731 ~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~ 785 (866)
+ ...... .. +......+.+++.+|++.+|++||++.+|++.|.
T Consensus 234 ~---~~~~~~------~~---~~~~~~~~~~~i~~cl~~~p~~Rps~~~vl~~l~ 276 (277)
T cd05036 234 V---TGGGRL------DP---PKGCPGPVYRIMTDCWQHTPEDRPNFATILERIQ 276 (277)
T ss_pred H---HcCCcC------CC---CCCCCHHHHHHHHHHcCCCcccCcCHHHHHHHhh
Confidence 1 111110 01 1111234566777999999999999999999885
|
Protein Tyrosine Kinase (PTK) family; Anaplastic Lymphoma Kinase (ALK) and Leukocyte Tyrosine (tyr) Kinase (LTK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyr residues in protein substrates. ALK and LTK are orphan receptor tyr kinases (RTKs) whose ligands are not yet well-defined. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. They are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. ALK appears to play an important role in mammalian neural development as well |
| >cd05065 PTKc_EphR_B Catalytic domain of the Protein Tyrosine Kinases, Class EphB Ephrin Receptors | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.9e-12 Score=137.83 Aligned_cols=130 Identities=22% Similarity=0.288 Sum_probs=89.3
Q ss_pred CcccCHHHHHHHhcCCccccccCCCCceeEEEeecC---CCCccCceeeecCCCCchhHHHHHHHHHHHHHh-cCCCCCC
Q 038019 643 PNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTAN---SYGYLAPEYAMRGHLTEKADVFSFGVVALEIIS-GRASSDK 718 (866)
Q Consensus 643 ~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~g---t~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~t-g~~p~~~ 718 (866)
.|++...+...++.|||.++.+..+.....+....+ +..|+|||+...+.++.++|||||||+++|+++ |+.|+..
T Consensus 135 ~nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~DvwslG~~l~e~l~~g~~p~~~ 214 (269)
T cd05065 135 RNILVNSNLVCKVSDFGLSRFLEDDTSDPTYTSSLGGKIPIRWTAPEAIAYRKFTSASDVWSYGIVMWEVMSYGERPYWD 214 (269)
T ss_pred heEEEcCCCcEEECCCccccccccCccccccccccCCCcceeecCHhHhccCcccchhhhhhhHHHHHHHhcCCCCCCCC
Confidence 366666666677889999887765433222332222 457999999999999999999999999999887 9999875
Q ss_pred CchhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhcC
Q 038019 719 SLDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLAGD 787 (866)
Q Consensus 719 ~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~~~ 787 (866)
.... ...+++.... . + |... +....+.+++..|++.+|++||+|.+|+.+|+..
T Consensus 215 ~~~~---~~~~~i~~~~---~----~-~~~~----~~~~~~~~li~~~l~~~p~~Rp~~~~i~~~l~~~ 268 (269)
T cd05065 215 MSNQ---DVINAIEQDY---R----L-PPPM----DCPTALHQLMLDCWQKDRNARPKFGQIVSTLDKM 268 (269)
T ss_pred CCHH---HHHHHHHcCC---c----C-CCcc----cCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHhh
Confidence 4322 2333332110 0 0 1111 1223456677899999999999999999999753
|
Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; class EphB receptors; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). Class EphB receptors bind to transmembrane ephrin-B ligands. There are six vertebrate EhpB receptors (EphB1-6), which display promiscuous interactions with three ephrin-B ligands. One exception is EphB2, which also interacts with ephrin A5. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephr |
| >cd05085 PTKc_Fer Catalytic domain of the Protein Tyrosine Kinase, Fer | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.6e-12 Score=135.22 Aligned_cols=127 Identities=23% Similarity=0.234 Sum_probs=87.2
Q ss_pred CcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHh-cCCCCCCCch
Q 038019 643 PNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIIS-GRASSDKSLD 721 (866)
Q Consensus 643 ~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~t-g~~p~~~~~~ 721 (866)
.|++...+...++.|||.++....+.+.... ...++..|+|||+..++.++.++|||||||+++|+++ |+.|+.....
T Consensus 122 ~nili~~~~~~~l~d~g~~~~~~~~~~~~~~-~~~~~~~y~aPE~~~~~~~~~~~Di~slG~ll~~~~~~g~~p~~~~~~ 200 (250)
T cd05085 122 RNCLVGENNVLKISDFGMSRQEDDGIYSSSG-LKQIPIKWTAPEALNYGRYSSESDVWSYGILLWETFSLGVCPYPGMTN 200 (250)
T ss_pred heEEEcCCCeEEECCCccceeccccccccCC-CCCCcccccCHHHhccCCCCchhHHHHHHHHHHHHhcCCCCCCCCCCH
Confidence 3666666666788999988776554332110 1134578999999999999999999999999999999 9999865432
Q ss_pred hhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHh
Q 038019 722 MEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLA 785 (866)
Q Consensus 722 ~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~ 785 (866)
.. ... ....+.. ... +......+.+++..|++.+|++||+|.||+++|.
T Consensus 201 ~~---~~~----~~~~~~~-----~~~---~~~~~~~~~~li~~~l~~~p~~Rp~~~~l~~~l~ 249 (250)
T cd05085 201 QQ---ARE----QVEKGYR-----MSC---PQKCPDDVYKVMQRCWDYKPENRPKFSELQKELA 249 (250)
T ss_pred HH---HHH----HHHcCCC-----CCC---CCCCCHHHHHHHHHHcccCcccCCCHHHHHHHhc
Confidence 21 111 1111110 011 1112345667788999999999999999999885
|
Protein Tyrosine Kinase (PTK) family; Fer kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fer kinase is a member of the Fes subfamily of proteins which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. Fer kinase is expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-c |
| >PTZ00284 protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=4.8e-12 Score=146.07 Aligned_cols=126 Identities=15% Similarity=0.131 Sum_probs=79.9
Q ss_pred HHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCCchhhhhcHHHHH
Q 038019 652 RSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSLDMEKIYLLEWA 731 (866)
Q Consensus 652 ~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~~~~~~l~~~~ 731 (866)
..++.|||.+...... .....||.+|||||++.+..++.++|||||||++|||+||+.||+.....+...++...
T Consensus 286 ~vkl~DfG~~~~~~~~-----~~~~~gt~~Y~APE~~~~~~~~~~~DiwSlGvil~elltG~~pf~~~~~~~~~~~i~~~ 360 (467)
T PTZ00284 286 RVRICDLGGCCDERHS-----RTAIVSTRHYRSPEVVLGLGWMYSTDMWSMGCIIYELYTGKLLYDTHDNLEHLHLMEKT 360 (467)
T ss_pred eEEECCCCccccCccc-----cccccCCccccCcHHhhcCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHH
Confidence 4678899876543221 22357899999999999999999999999999999999999999865443322222211
Q ss_pred HH-----------------Hhhc-CCcccccCCcc-----cccCH---HHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 732 WN-----------------LHEN-NQSFGLVDPTL-----TEFND---KEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 732 ~~-----------------~~~~-~~~~~~~d~~l-----~~~~~---~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
.. .+.. +......++.. ..... .+-..+.++...|++.||++|||+.|+++
T Consensus 361 ~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dli~~mL~~dP~~R~ta~e~L~ 437 (467)
T PTZ00284 361 LGRLPSEWAGRCGTEEARLLYNSAGQLRPCTDPKHLARIARARPVREVIRDDLLCDLIYGLLHYDRQKRLNARQMTT 437 (467)
T ss_pred cCCCCHHHHhhccchhHHHHhhhcccccccCCHHHHHhhhcccchhhhhchHHHHHHHHHhCCcChhhCCCHHHHhc
Confidence 10 0000 00000111110 00000 01234567888999999999999999985
|
|
| >cd05038 PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases | Back alignment and domain information |
|---|
Probab=99.25 E-value=4.8e-12 Score=135.83 Aligned_cols=138 Identities=20% Similarity=0.223 Sum_probs=91.1
Q ss_pred CCcccCHHHHHHHhcCCccccccCCCC-ceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCCc
Q 038019 642 KPNIFGYAELRSATKDFNRSNKLGEGG-YGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSL 720 (866)
Q Consensus 642 ~~~~~~~~~~~~~~~dF~~~~~lg~g~-~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~ 720 (866)
..|++...+...++.|||.++.+..+. +-.......++..|+|||+.....++.++||||||++++||+||+.|+....
T Consensus 137 p~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~Di~slG~~l~el~tg~~p~~~~~ 216 (284)
T cd05038 137 ARNILVESEDLVKISDFGLAKVLPEDKDYYYVKEPGESPIFWYAPECLRTSKFSSASDVWSFGVTLYELFTYGDPSQSPP 216 (284)
T ss_pred HHhEEEcCCCCEEEcccccccccccCCcceeccCCCCCcccccCcHHHccCCCCcccchHHHhhhhheeeccCCCccccc
Confidence 346676666777899999998886332 2122222345667999999998899999999999999999999999876432
Q ss_pred hhhhh--------cHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhcC
Q 038019 721 DMEKI--------YLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLAGD 787 (866)
Q Consensus 721 ~~~~~--------~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~~~ 787 (866)
..... ............+. +. ..+.....++.+++.+|++.+|++||+|.||+++|+..
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~-~~~~~~~~~~~~li~~cl~~~p~~Rpt~~ei~~~l~~i 283 (284)
T cd05038 217 AEFLRMIGIAQGQMIVTRLLELLKEGE-------RL-PRPPSCPDEVYDLMKLCWEAEPQDRPSFADLILIVDRL 283 (284)
T ss_pred chhccccccccccccHHHHHHHHHcCC-------cC-CCCccCCHHHHHHHHHHhccChhhCCCHHHHHHHHhhc
Confidence 11100 00111111111110 00 01112224577788899999999999999999999853
|
Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by aut |
| >cd05086 PTKc_Aatyk2 Catalytic domain of the Protein Tyrosine Kinase, Apoptosis-associated tyrosine kinase 2 | Back alignment and domain information |
|---|
Probab=99.25 E-value=8.7e-12 Score=132.81 Aligned_cols=134 Identities=20% Similarity=0.224 Sum_probs=84.5
Q ss_pred CCCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeec-------CCCCchhHHHHHHHHHHHHHh-c
Q 038019 641 SKPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMR-------GHLTEKADVFSFGVVALEIIS-G 712 (866)
Q Consensus 641 ~~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~-------~~~t~ksDVySfGvvLlEl~t-g 712 (866)
...|++...+...++.|||.+.......+-....+..++..|+|||+... ..++.++|||||||+++||++ |
T Consensus 126 kp~nil~~~~~~~~l~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~~l~el~~~~ 205 (268)
T cd05086 126 ALRNCFLTSDLTVKVGDYGIGPSRYKEDYIETEDDKCVPLRWLAPELVGEFHGGLITAEQTKPSNVWALGVTLWELFENA 205 (268)
T ss_pred ccceEEEcCCccEEecccccccccCcchhhhcccCCcCcccccCchhcccccCccccCCCCCcchhHHHHHHHHHHHhCC
Confidence 34467776777788899998754332222111223457889999998743 345789999999999999997 4
Q ss_pred CCCCCCCchhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHh
Q 038019 713 RASSDKSLDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLA 785 (866)
Q Consensus 713 ~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~ 785 (866)
+.|+......+ ....... +......+|.+.....+. +.++...|| .+|++||+|++|++.|.
T Consensus 206 ~~p~~~~~~~~------~~~~~~~-~~~~~~~~~~~~~~~~~~---~~~l~~~c~-~~P~~Rp~~~~i~~~l~ 267 (268)
T cd05086 206 AQPYSHLSDRE------VLNHVIK-DQQVKLFKPQLELPYSER---WYEVLQFCW-LSPEKRATAEEVHRLLT 267 (268)
T ss_pred CCCCCCCCHHH------HHHHHHh-hcccccCCCccCCCCcHH---HHHHHHHHh-hCcccCCCHHHHHHHhc
Confidence 66775432211 1112121 222344555553222233 333455799 57999999999999884
|
Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 2 (Aatyk2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk2 is a member of the Aatyk subfamily of proteins, which are receptor kinases containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk2 is also called lemur tyrosine kinase 2 (Lmtk2) or brain-enriched kinase (Brek). It is expressed at high levels in early postnatal brain, and has been shown to play a role in nerve growth factor (NGF) signaling. Studies with knockout mice reveal that Aatyk2 is essential for late stage |
| >PHA03211 serine/threonine kinase US3; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=1e-11 Score=141.38 Aligned_cols=75 Identities=21% Similarity=0.114 Sum_probs=60.1
Q ss_pred CcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCC
Q 038019 643 PNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSD 717 (866)
Q Consensus 643 ~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~ 717 (866)
.|++...+...++.|||.++.+..........+..||.+|||||++.+..++.++|||||||+||||++|..++.
T Consensus 289 ~NILl~~~~~vkL~DFGla~~~~~~~~~~~~~~~~GT~~Y~APE~~~~~~~~~~sDvwSlGviL~El~~g~~~lf 363 (461)
T PHA03211 289 ENVLVNGPEDICLGDFGAACFARGSWSTPFHYGIAGTVDTNAPEVLAGDPYTPSVDIWSAGLVIFEAAVHTASLF 363 (461)
T ss_pred HHEEECCCCCEEEcccCCceecccccccccccccCCCcCCcCHHHHcCCCCCchHHHHHHHHHHHHHHHcCCCcc
Confidence 466666666778999999887644332233445679999999999999999999999999999999999887653
|
|
| >PHA03212 serine/threonine kinase US3; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.3e-11 Score=138.69 Aligned_cols=76 Identities=22% Similarity=0.156 Sum_probs=59.7
Q ss_pred CCCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCC
Q 038019 641 SKPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSD 717 (866)
Q Consensus 641 ~~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~ 717 (866)
...|++...+...++.|||.++...... ...+.+..||+.|+|||++....++.++|||||||+++||+||+.|+.
T Consensus 209 KP~NIll~~~~~vkL~DFG~a~~~~~~~-~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~elltg~~p~~ 284 (391)
T PHA03212 209 KAENIFINHPGDVCLGDFGAACFPVDIN-ANKYYGWAGTIATNAPELLARDPYGPAVDIWSAGIVLFEMATCHDSLF 284 (391)
T ss_pred ChHhEEEcCCCCEEEEeCCccccccccc-ccccccccCccCCCChhhhcCCCCCcHHHHHHHHHHHHHHHHCCCCcC
Confidence 3346666666667899999987643321 123445679999999999999999999999999999999999998764
|
|
| >cd06612 STKc_MST1_2 Catalytic domain of the Protein Serine/Threonine Kinases, Mammalian Ste20-like protein kinase 1 and 2 | Back alignment and domain information |
|---|
Probab=99.23 E-value=5.6e-12 Score=133.02 Aligned_cols=125 Identities=23% Similarity=0.258 Sum_probs=84.6
Q ss_pred CcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCCchh
Q 038019 643 PNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSLDM 722 (866)
Q Consensus 643 ~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~~ 722 (866)
.|++...+...++.|||.+..+..... ......|+..|+|||+..+..++.|+|||||||+++||+||+.|+......
T Consensus 128 ~ni~~~~~~~~~l~dfg~~~~~~~~~~--~~~~~~~~~~y~~PE~~~~~~~~~~~Di~s~G~il~~l~~g~~p~~~~~~~ 205 (256)
T cd06612 128 GNILLNEEGQAKLADFGVSGQLTDTMA--KRNTVIGTPFWMAPEVIQEIGYNNKADIWSLGITAIEMAEGKPPYSDIHPM 205 (256)
T ss_pred ceEEECCCCcEEEcccccchhcccCcc--ccccccCCccccCHHHHhcCCCCchhhHHHHHHHHHHHHhCCCCCCCcchh
Confidence 356666666678899999888765431 112235788999999999889999999999999999999999998754322
Q ss_pred hhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 723 EKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 723 ~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
... .. ... ...+.+ ..+......+.++..+|++.+|++||+|.||++
T Consensus 206 ~~~---~~----~~~-----~~~~~~-~~~~~~~~~~~~~i~~~l~~~P~~Rps~~~il~ 252 (256)
T cd06612 206 RAI---FM----IPN-----KPPPTL-SDPEKWSPEFNDFVKKCLVKDPEERPSAIQLLQ 252 (256)
T ss_pred hhh---hh----hcc-----CCCCCC-CchhhcCHHHHHHHHHHHhcChhhCcCHHHHhc
Confidence 110 00 000 000111 011111234566677999999999999999975
|
Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a |
| >cd07874 STKc_JNK3 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 3 | Back alignment and domain information |
|---|
Probab=99.23 E-value=6.7e-12 Score=139.60 Aligned_cols=139 Identities=19% Similarity=0.166 Sum_probs=88.7
Q ss_pred CCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCCch
Q 038019 642 KPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSLD 721 (866)
Q Consensus 642 ~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~ 721 (866)
..|++...+...++.|||.++..+.+.. .....||..|+|||++.+..++.++|||||||+++||++|+.|+.....
T Consensus 147 p~Nill~~~~~~kl~Dfg~~~~~~~~~~---~~~~~~t~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~ 223 (355)
T cd07874 147 PSNIVVKSDCTLKILDFGLARTAGTSFM---MTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKILFPGRDY 223 (355)
T ss_pred hHHEEECCCCCEEEeeCcccccCCCccc---cCCccccCCccCHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCH
Confidence 3467776677788999999988765432 2234689999999999988999999999999999999999999875432
Q ss_pred hhhhcH-H---------------HHHHHHhhcC-CcccccCCcc---------cccCHHHHHHHHHHHHHccCCCCCCCC
Q 038019 722 MEKIYL-L---------------EWAWNLHENN-QSFGLVDPTL---------TEFNDKEALRVIGVALLCTQTSPMMRP 775 (866)
Q Consensus 722 ~~~~~l-~---------------~~~~~~~~~~-~~~~~~d~~l---------~~~~~~~~~~~~~la~~C~~~~p~~RP 775 (866)
.+...- . ..+....... .......+.. ..........+.++..+|++.||++||
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~mL~~dP~~Rp 303 (355)
T cd07874 224 IDQWNKVIEQLGTPCPEFMKKLQPTVRNYVENRPKYAGLTFPKLFPDSLFPADSEHNKLKASQARDLLSKMLVIDPAKRI 303 (355)
T ss_pred HHHHHHHHHHhCCCCHHHHHhhcHHHHHHHhcCCccccccchhhccccccccccccccccchHHHHHHHHHhcCCchhcC
Confidence 211100 0 0011111000 0000000110 001111123456778899999999999
Q ss_pred CHHHHHHH
Q 038019 776 PMSRVVAM 783 (866)
Q Consensus 776 sm~~V~~~ 783 (866)
|+.|+++.
T Consensus 304 s~~ell~h 311 (355)
T cd07874 304 SVDEALQH 311 (355)
T ss_pred CHHHHhcC
Confidence 99999863
|
Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 3 (JNK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK3 is expressed primarily in the brain, and to a lesser extent in the heart and testis. Mice deficient in Jnk3 are protected against kainic acid-induced seizures, strok |
| >cd05042 PTKc_Aatyk Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.4e-11 Score=131.20 Aligned_cols=134 Identities=22% Similarity=0.240 Sum_probs=85.0
Q ss_pred CCCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeee-------cCCCCchhHHHHHHHHHHHHHh-c
Q 038019 641 SKPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAM-------RGHLTEKADVFSFGVVALEIIS-G 712 (866)
Q Consensus 641 ~~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~-------~~~~t~ksDVySfGvvLlEl~t-g 712 (866)
...|++..++...++.|||.++....+++.....+..++..|+|||+.. ...++.++|||||||+++||++ |
T Consensus 127 kp~Nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~~l~el~~~~ 206 (269)
T cd05042 127 ALRNCQLTADLSVKIGDYGLALEQYPEDYYITKDCHAVPLRWLAPELVEIRGQDLLPKDQTKKSNIWSLGVTMWELFTAA 206 (269)
T ss_pred cHhheEecCCCcEEEeccccccccccchheeccCCCCCcccccCHHHHhhccccccccccchhhHHHHHHHHHHHHHhCC
Confidence 3347777777778899999987665443322223345677899999864 3467889999999999999999 7
Q ss_pred CCCCCCCchhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHh
Q 038019 713 RASSDKSLDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLA 785 (866)
Q Consensus 713 ~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~ 785 (866)
+.|+......+ ..... ...+ .....+|.+..... ..+.++...|| .||++||++.+|+++|.
T Consensus 207 ~~p~~~~~~~~---~~~~~---~~~~-~~~~~~~~~~~~~~---~~~~~~~~~~~-~dp~~Rpt~~~v~~~l~ 268 (269)
T cd05042 207 DQPYPDLSDEQ---VLKQV---VREQ-DIKLPKPQLDLKYS---DRWYEVMQFCW-LDPETRPTAEEVHELLT 268 (269)
T ss_pred CCCCCcCCHHH---HHHHH---hhcc-CccCCCCcccccCC---HHHHHHHHHHh-cCcccccCHHHHHHHhc
Confidence 77876433221 11111 1111 11222333321112 22334556788 59999999999999874
|
Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase (Aatyk) subfamily; catalytic (c) domain. The Aatyk subfamily is also referred to as the lemur tyrosine kinase (Lmtk) subfamily. It consists of Aatyk1 (Lmtk1), Aatyk2 (Lmtk2, Brek), Aatyk3 (Lmtk3), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk proteins are mostly receptor tyr kinases (RTKs) containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 does not contain a transmembrane segment and is a cytoplasmic (or nonreceptor) kinase. Aatyk proteins are classified as tyr kina |
| >cd06642 STKc_STK25-YSK1 Catalytic domain of the Protein Serine/Threonine Kinase, STK25 or Yeast Sps1/Ste20-related kinase 1 | Back alignment and domain information |
|---|
Probab=99.23 E-value=9.2e-12 Score=133.28 Aligned_cols=124 Identities=20% Similarity=0.289 Sum_probs=85.7
Q ss_pred CcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCCchh
Q 038019 643 PNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSLDM 722 (866)
Q Consensus 643 ~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~~ 722 (866)
.|++..++...++.|||.++.+...... .....|+..|+|||+..+..++.++|||||||+++||+||+.|+....+.
T Consensus 130 ~ni~i~~~~~~~l~dfg~~~~~~~~~~~--~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~ 207 (277)
T cd06642 130 ANVLLSEQGDVKLADFGVAGQLTDTQIK--RNTFVGTPFWMAPEVIKQSAYDFKADIWSLGITAIELAKGEPPNSDLHPM 207 (277)
T ss_pred heEEEeCCCCEEEccccccccccCcchh--hhcccCcccccCHHHhCcCCCchhhhHHHHHHHHHHHHhCCCCCcccchh
Confidence 3566655666778999988877643321 12235788999999999889999999999999999999999998643221
Q ss_pred hhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 038019 723 EKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAM 783 (866)
Q Consensus 723 ~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~ 783 (866)
. ...+ ...+ ..+.+. ......+.+++..|++.+|++||+|.+|++.
T Consensus 208 ~---~~~~----~~~~-----~~~~~~---~~~~~~~~~li~~~l~~~p~~Rp~~~~il~~ 253 (277)
T cd06642 208 R---VLFL----IPKN-----SPPTLE---GQYSKPFKEFVEACLNKDPRFRPTAKELLKH 253 (277)
T ss_pred h---HHhh----hhcC-----CCCCCC---cccCHHHHHHHHHHccCCcccCcCHHHHHHh
Confidence 1 1111 1111 112221 1223445667779999999999999999874
|
Serine/threonine kinases (STKs), STK25 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK25 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. STK25 is also called Ste20/oxidant stress response kinase 1 (SOK1) or yeast Sps1/Ste20-related kinase 1 (YSK1). STK25 is localized in the Golgi apparatus through its interaction with the Golgi matrix protein GM130. It may play a role in the regulation of cell migration and polarization. STK25 binds and phosphorylates CCM3 (cerebral cavernous malformation 3), also called PCD10 (programmed cell death 10), and may play a role in apoptosis. Human STK25 |
| >cd05057 PTKc_EGFR_like Catalytic domain of Epidermal Growth Factor Receptor-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Probab=99.23 E-value=8.9e-12 Score=133.56 Aligned_cols=132 Identities=17% Similarity=0.210 Sum_probs=90.7
Q ss_pred CCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHh-cCCCCCCCc
Q 038019 642 KPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIIS-GRASSDKSL 720 (866)
Q Consensus 642 ~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~t-g~~p~~~~~ 720 (866)
..|++..++...++.|||.++.+..+.......+..++..|+|||+...+.++.++||||||++++|++| |+.|++...
T Consensus 137 p~nil~~~~~~~kL~dfg~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~ 216 (279)
T cd05057 137 ARNVLVKTPQHVKITDFGLAKLLDVDEKEYHAEGGKVPIKWMALESILHRIYTHKSDVWSYGVTVWELMTFGAKPYEGIP 216 (279)
T ss_pred cceEEEcCCCeEEECCCcccccccCcccceecCCCcccccccCHHHhhcCCcCchhhHHHHHHHHHHHhcCCCCCCCCCC
Confidence 3466666666778999999988764432222223334678999999988899999999999999999999 999987543
Q ss_pred hhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhcCc
Q 038019 721 DMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLAGDI 788 (866)
Q Consensus 721 ~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~~~~ 788 (866)
..+ +..++. .+.. .-.|. .....+.+++..||..+|++||++.++++.|+...
T Consensus 217 ~~~---~~~~~~----~~~~--~~~~~------~~~~~~~~~~~~~l~~~p~~Rp~~~~l~~~l~~~~ 269 (279)
T cd05057 217 AVE---IPDLLE----KGER--LPQPP------ICTIDVYMVLVKCWMIDAESRPTFKELINEFSKMA 269 (279)
T ss_pred HHH---HHHHHh----CCCC--CCCCC------CCCHHHHHHHHHHcCCChhhCCCHHHHHHHHHHHH
Confidence 221 222221 1111 00111 11234566777999999999999999999998653
|
Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR) subfamily; catalytic (c) domain. EGFR (HER, ErbB) subfamily members include EGFR (HER1, ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The EGFR proteins are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instea |
| >cd05041 PTKc_Fes_like Catalytic domain of Fes-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Probab=99.23 E-value=6.3e-12 Score=132.30 Aligned_cols=128 Identities=21% Similarity=0.229 Sum_probs=87.6
Q ss_pred CcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHh-cCCCCCCCch
Q 038019 643 PNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIIS-GRASSDKSLD 721 (866)
Q Consensus 643 ~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~t-g~~p~~~~~~ 721 (866)
.|++...+...++.|||.++....+.+........++..|+|||+..++.++.++|||||||+++||+| |+.|+.....
T Consensus 122 ~nili~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~i~~~l~t~~~~p~~~~~~ 201 (251)
T cd05041 122 RNCLVGENNVLKISDFGMSREEEGGIYTVSDGLKQIPIKWTAPEALNYGRYTSESDVWSYGILLWETFSLGDTPYPGMSN 201 (251)
T ss_pred ceEEEcCCCcEEEeeccccccccCCcceeccccCcceeccCChHhhccCCCCcchhHHHHHHHHHHHHhccCCCCccCCH
Confidence 466666666778899999887765544222112234567999999998999999999999999999999 7888764332
Q ss_pred hhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHh
Q 038019 722 MEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLA 785 (866)
Q Consensus 722 ~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~ 785 (866)
.. ....+ ..+. .. .. +......+.+++.+|++.+|++||++.||++.|+
T Consensus 202 ~~---~~~~~----~~~~--~~---~~---~~~~~~~~~~li~~~l~~~p~~Rp~~~ell~~l~ 250 (251)
T cd05041 202 QQ---TRERI----ESGY--RM---PA---PQLCPEEIYRLMLQCWAYDPENRPSFSEIYNELQ 250 (251)
T ss_pred HH---HHHHH----hcCC--CC---CC---CccCCHHHHHHHHHHhccChhhCcCHHHHHHHhh
Confidence 11 11111 1110 00 01 1112235666777999999999999999999886
|
Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr k |
| >cd05600 STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p- and Dbf2p-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.23 E-value=6.2e-12 Score=138.56 Aligned_cols=128 Identities=16% Similarity=0.080 Sum_probs=85.1
Q ss_pred CcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCCchh
Q 038019 643 PNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSLDM 722 (866)
Q Consensus 643 ~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~~ 722 (866)
.|++...+...++.|||.+..... ......||++|+|||++.+..++.++|||||||+++||++|+.|+......
T Consensus 130 ~Nil~~~~~~~kL~Dfg~a~~~~~-----~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~ell~g~~pf~~~~~~ 204 (333)
T cd05600 130 ENFLIDASGHIKLTDFGLSKGIVT-----YANSVVGSPDYMAPEVLRGKGYDFTVDYWSLGCMLYEFLCGFPPFSGSTPN 204 (333)
T ss_pred HHEEECCCCCEEEEeCcCCccccc-----ccCCcccCccccChhHhcCCCCCCccceecchHHHhhhhhCCCCCCCCCHH
Confidence 366666666778899998876643 123346899999999999999999999999999999999999999754432
Q ss_pred hhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 038019 723 EKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAM 783 (866)
Q Consensus 723 ~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~ 783 (866)
+. ...+... ... ...|............+.++...|++.+|++||++.++++.
T Consensus 205 ~~---~~~i~~~---~~~--~~~~~~~~~~~~~s~~~~~li~~~l~~~~~rr~s~~~ll~h 257 (333)
T cd05600 205 ET---WENLKYW---KET--LQRPVYDDPRFNLSDEAWDLITKLINDPSRRFGSLEDIKNH 257 (333)
T ss_pred HH---HHHHHhc---ccc--ccCCCCCccccccCHHHHHHHHHHhhChhhhcCCHHHHHhC
Confidence 21 1111110 000 01111110000112234455668999999999999999864
|
Serine/Threonine Kinases (STKs), ROCK- and NDR-like subfamily, fungal Sid2p- and Dbf2p-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sid2p- and Dbf2p-like group is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group contains fungal kinases including Schizosaccharomyces pombe Sid2p and Saccharomyces cerevisiae Dbf2p. Group members show similarity to NDR kinases in that they contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Sid2p plays a crucial role in the septum initiation network (SIN) and in the initiation of cytokinesis. |
| >cd05592 STKc_nPKC_theta_delta Catalytic domain of the Protein Serine/Threonine Kinases, Novel Protein Kinase C theta and delta | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.7e-11 Score=133.96 Aligned_cols=120 Identities=20% Similarity=0.237 Sum_probs=81.5
Q ss_pred CcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCCchh
Q 038019 643 PNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSLDM 722 (866)
Q Consensus 643 ~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~~ 722 (866)
.|++...+...++.|||.++....+. .......||..|+|||++.+..++.++|||||||+++||++|+.|+......
T Consensus 125 ~Nill~~~~~~kL~Dfg~a~~~~~~~--~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~ell~G~~Pf~~~~~~ 202 (316)
T cd05592 125 DNVLLDKDGHIKIADFGMCKENMNGE--GKASTFCGTPDYIAPEILKGQKYNESVDWWSFGVLLYEMLIGQSPFHGEDED 202 (316)
T ss_pred HHeEECCCCCEEEccCcCCeECCCCC--CccccccCCccccCHHHHcCCCCCCcccchhHHHHHHHHHhCCCCCCCCCHH
Confidence 36666666677899999887653322 1223456899999999999889999999999999999999999999754321
Q ss_pred hhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHH
Q 038019 723 EKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRV 780 (866)
Q Consensus 723 ~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V 780 (866)
+ +. .... .. .+.+......+ +.++...|++.+|++||++.+.
T Consensus 203 ~---~~---~~i~-~~------~~~~~~~~~~~---~~~ll~~~l~~~P~~R~~~~~~ 244 (316)
T cd05592 203 E---LF---DSIL-ND------RPHFPRWISKE---AKDCLSKLFERDPTKRLGVDGD 244 (316)
T ss_pred H---HH---HHHH-cC------CCCCCCCCCHH---HHHHHHHHccCCHHHcCCChHH
Confidence 1 11 1111 11 11121112223 3445569999999999998643
|
Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta and delta-like isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an imp |
| >cd05079 PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Janus kinase 1 | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.7e-12 Score=137.96 Aligned_cols=137 Identities=16% Similarity=0.207 Sum_probs=90.8
Q ss_pred CCcccCHHHHHHHhcCCccccccCCCC-ceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCCc
Q 038019 642 KPNIFGYAELRSATKDFNRSNKLGEGG-YGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSL 720 (866)
Q Consensus 642 ~~~~~~~~~~~~~~~dF~~~~~lg~g~-~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~ 720 (866)
..|++...+...++.|||.++.+..+. ...+.....++..|+|||+..++.++.++|||||||+++||+|++.|.....
T Consensus 137 p~Nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~y~apE~~~~~~~~~~~Di~slG~il~ellt~~~~~~~~~ 216 (284)
T cd05079 137 ARNVLVESEHQVKIGDFGLTKAIETDKEYYTVKDDLDSPVFWYAPECLIQSKFYIASDVWSFGVTLYELLTYCDSESSPM 216 (284)
T ss_pred hheEEEcCCCCEEECCCccccccccCccceeecCCCCCCccccCHHHhccCCCCccccchhhhhhhhhhhcCCCCCcccc
Confidence 346666666677889999998876532 2233334456778999999988899999999999999999999887643211
Q ss_pred h---------hhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhcC
Q 038019 721 D---------MEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLAGD 787 (866)
Q Consensus 721 ~---------~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~~~ 787 (866)
. ........+ ......+.... ........+.+++..|++.+|++||++.+|++.|+..
T Consensus 217 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--------~~~~~~~~~~~li~~~l~~~p~~Rpt~~~il~~l~~~ 283 (284)
T cd05079 217 TLFLKMIGPTHGQMTVTRL-VRVLEEGKRLP--------RPPNCPEEVYQLMRKCWEFQPSKRTTFQNLIEGFEAI 283 (284)
T ss_pred chhhhhcccccccccHHHH-HHHHHcCccCC--------CCCCCCHHHHHHHHHHccCCcccCcCHHHHHHHHHhh
Confidence 0 001111111 11122221110 0111234577788899999999999999999999853
|
Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers a |
| >cd06637 STKc_TNIK Catalytic domain of the Protein Serine/Threonine Kinase, Traf2- and Nck-interacting kinase | Back alignment and domain information |
|---|
Probab=99.22 E-value=8.2e-12 Score=133.19 Aligned_cols=124 Identities=19% Similarity=0.240 Sum_probs=81.7
Q ss_pred CcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeee-----cCCCCchhHHHHHHHHHHHHHhcCCCCC
Q 038019 643 PNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAM-----RGHLTEKADVFSFGVVALEIISGRASSD 717 (866)
Q Consensus 643 ~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~-----~~~~t~ksDVySfGvvLlEl~tg~~p~~ 717 (866)
.|++..++...++.|||.+..+.... +. .....|+..|+|||++. ...++.++|||||||++|||++|+.|++
T Consensus 140 ~nili~~~~~~~l~Dfg~~~~~~~~~-~~-~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~Dv~slGv~l~el~~g~~p~~ 217 (272)
T cd06637 140 QNVLLTENAEVKLVDFGVSAQLDRTV-GR-RNTFIGTPYWMAPEVIACDENPDATYDFKSDLWSLGITAIEMAEGAPPLC 217 (272)
T ss_pred HHEEECCCCCEEEccCCCceeccccc-cc-CCcccccccccCHhHhccccCcCCCCCchhhHHHHHHHHHHHHhCCCCcc
Confidence 35666666667899999987764321 11 12346889999999886 3468899999999999999999999986
Q ss_pred CCchhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 718 KSLDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 718 ~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
........ . . .... .++.+.. ......+.++..+|++.+|.+||++.||++
T Consensus 218 ~~~~~~~~-----~-~-~~~~-----~~~~~~~--~~~~~~~~~li~~~l~~~p~~Rpt~~~il~ 268 (272)
T cd06637 218 DMHPMRAL-----F-L-IPRN-----PAPRLKS--KKWSKKFQSFIESCLVKNHSQRPTTEQLMK 268 (272)
T ss_pred ccCHHHHH-----H-H-HhcC-----CCCCCCC--CCcCHHHHHHHHHHcCCChhhCCCHHHHhh
Confidence 43322111 1 0 0111 0111110 011224556777999999999999999874
|
Serine/threonine kinases (STKs), Traf2- and Nck-interacting kinase (TNIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TNIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to mitogen-activated protein kinase (MAPK), kinase kinase kinase 4 (MAP4K4), and MAP4K6. MAP4Ks participate in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). TNIK is an effector of Rap2, a small GTP-binding protein from the Ras family. TNIK specifically activ |
| >cd05078 PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3 | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.4e-11 Score=130.40 Aligned_cols=109 Identities=19% Similarity=0.219 Sum_probs=71.1
Q ss_pred HhcCCccccccCCCCceeEEEeecCCCCccCceeeec-CCCCchhHHHHHHHHHHHHHhcC-CCCCCCchhhhhcHHHHH
Q 038019 654 ATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMR-GHLTEKADVFSFGVVALEIISGR-ASSDKSLDMEKIYLLEWA 731 (866)
Q Consensus 654 ~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~-~~~t~ksDVySfGvvLlEl~tg~-~p~~~~~~~~~~~l~~~~ 731 (866)
++.|||.+....... ...++..|+|||++.. ..++.++|||||||+++||++|+ .|+....... ..
T Consensus 148 ~l~d~g~~~~~~~~~------~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~~l~~l~~g~~~~~~~~~~~~------~~ 215 (258)
T cd05078 148 KLSDPGISITVLPKE------ILLERIPWVPPECIENPQNLSLAADKWSFGTTLWEIFSGGDKPLSALDSQK------KL 215 (258)
T ss_pred EecccccccccCCch------hccccCCccCchhccCCCCCCchhhHHHHHHHHHHHHcCCCCChhhccHHH------HH
Confidence 456666665443221 1357889999999986 45899999999999999999995 4544322111 11
Q ss_pred HHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHh
Q 038019 732 WNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLA 785 (866)
Q Consensus 732 ~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~ 785 (866)
. ..... +.+.. ....++.+++..|++.+|++||+|++++++|+
T Consensus 216 ~-~~~~~-------~~~~~---~~~~~~~~li~~~l~~~p~~Rps~~~il~~l~ 258 (258)
T cd05078 216 Q-FYEDR-------HQLPA---PKWTELANLINQCMDYEPDFRPSFRAIIRDLN 258 (258)
T ss_pred H-HHHcc-------ccCCC---CCcHHHHHHHHHHhccChhhCCCHHHHHHhcC
Confidence 0 11110 11111 11234566777999999999999999999874
|
Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity |
| >KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.22 E-value=4.1e-13 Score=145.44 Aligned_cols=177 Identities=26% Similarity=0.377 Sum_probs=155.6
Q ss_pred eEEEEEEcccCcCCCCCcccCCCCCCCEEEccCCCCCCCCCccccCCCCcCEEeccCCcCCCCCCccccCCCCCCEeecc
Q 038019 66 HITKLRVYGLNKKGVIPEELVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKELTVLAFG 145 (866)
Q Consensus 66 ~v~~L~l~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls 145 (866)
..+..+|+.|.+. .+|..+..+..|+.|.|..|.+. .+|..+.+|..|++|||+.|+++ .+|..++.|+ |+.|-++
T Consensus 76 dt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~s 151 (722)
T KOG0532|consen 76 DTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVS 151 (722)
T ss_pred chhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEe
Confidence 3456677777776 68888889999999999999997 78999999999999999999998 7898998887 9999999
Q ss_pred CCCCCCCCchhhcCCCCccEEEeecCCCCCCChhhhhcCcCCCEEEecCCCCCCCCcccccCCCCCCeEEccCCCCCCCC
Q 038019 146 TNNFSGALPPELGNLAKLEQLYIDSCGAGGEIPSTFAKLRNMQTLWASDNPFTGKIPDFIGNWTKLKSLRFQGNSFQGPI 225 (866)
Q Consensus 146 ~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~ 225 (866)
+|+++ .+|..++.+..|..|+.+.|.+. .+|..++.+.+|+.|.+..|++. .+|+.+..| .|..||++.|++. .+
T Consensus 152 NNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis-~i 226 (722)
T KOG0532|consen 152 NNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKIS-YL 226 (722)
T ss_pred cCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCcee-ec
Confidence 99998 78999999999999999999986 46777999999999999999998 567777766 5999999999998 78
Q ss_pred chhhcCCCCCCEEEccCccCCCCCch
Q 038019 226 PSSLSKLASLESLQMSDIYNVSSSLD 251 (866)
Q Consensus 226 p~~~~~l~~L~~L~l~~n~~~~~~~~ 251 (866)
|-.|.+|..|++|.|.+|.+.+-...
T Consensus 227 Pv~fr~m~~Lq~l~LenNPLqSPPAq 252 (722)
T KOG0532|consen 227 PVDFRKMRHLQVLQLENNPLQSPPAQ 252 (722)
T ss_pred chhhhhhhhheeeeeccCCCCCChHH
Confidence 99999999999999999888755443
|
|
| >cd05082 PTKc_Csk Catalytic domain of the Protein Tyrosine Kinase, C-terminal Src kinase | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.4e-11 Score=130.27 Aligned_cols=125 Identities=19% Similarity=0.209 Sum_probs=86.3
Q ss_pred CCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHh-cCCCCCCCc
Q 038019 642 KPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIIS-GRASSDKSL 720 (866)
Q Consensus 642 ~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~t-g~~p~~~~~ 720 (866)
..|++..++...++.|||.++...... ....++.+|+|||+.....++.++||||||++++||++ |+.|+....
T Consensus 130 p~nil~~~~~~~kl~dfg~~~~~~~~~-----~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~i~~~l~~~g~~p~~~~~ 204 (256)
T cd05082 130 ARNVLVSEDNVAKVSDFGLTKEASSTQ-----DTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIP 204 (256)
T ss_pred hheEEEcCCCcEEecCCccceeccccC-----CCCccceeecCHHHHccCCCCchhhhHHHHHHHHHHHhCCCCCCCCCC
Confidence 346777677778899999887654321 11234568999999998899999999999999999998 888876432
Q ss_pred hhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhc
Q 038019 721 DMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLAG 786 (866)
Q Consensus 721 ~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~~ 786 (866)
. ..+..++. .+.. +... ......+.+++.+|++.+|++||+|.++++.|+.
T Consensus 205 ~---~~~~~~~~----~~~~-----~~~~---~~~~~~~~~li~~~l~~~p~~Rpt~~~l~~~l~~ 255 (256)
T cd05082 205 L---KDVVPRVE----KGYK-----MDAP---DGCPPVVYDVMKQCWHLDAATRPSFLQLREQLEH 255 (256)
T ss_pred H---HHHHHHHh----cCCC-----CCCC---CCCCHHHHHHHHHHhcCChhhCcCHHHHHHHHhc
Confidence 1 11222221 1111 1111 1122345567779999999999999999999974
|
Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, re |
| >cd05067 PTKc_Lck_Blk Catalytic domain of the Protein Tyrosine Kinases, Lymphocyte-specific kinase and Blk | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.6e-11 Score=130.00 Aligned_cols=128 Identities=23% Similarity=0.316 Sum_probs=89.0
Q ss_pred CcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHh-cCCCCCCCch
Q 038019 643 PNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIIS-GRASSDKSLD 721 (866)
Q Consensus 643 ~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~t-g~~p~~~~~~ 721 (866)
.|++...+...++.|||.++.+..+.+ .+..+..++..|+|||+...+.++.++|||||||+++|+++ |+.|+.....
T Consensus 131 ~ni~i~~~~~~~l~dfg~~~~~~~~~~-~~~~~~~~~~~y~~pe~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~ 209 (260)
T cd05067 131 ANILVSETLCCKIADFGLARLIEDNEY-TAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTYGRIPYPGMTN 209 (260)
T ss_pred HhEEEcCCCCEEEccCcceeecCCCCc-ccccCCcccccccCHHHhccCCcCcccchHHHHHHHHHHHhCCCCCCCCCCh
Confidence 366666666677889998877764332 22233456789999999998999999999999999999999 9999875432
Q ss_pred hhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhc
Q 038019 722 MEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLAG 786 (866)
Q Consensus 722 ~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~~ 786 (866)
.+ +.... ..+.. +...... ..++.+++.+|++.+|++||+++++...|+.
T Consensus 210 ~~---~~~~~----~~~~~-----~~~~~~~---~~~~~~li~~~l~~~p~~Rp~~~~l~~~l~~ 259 (260)
T cd05067 210 PE---VIQNL----ERGYR-----MPRPDNC---PEELYELMRLCWKEKPEERPTFEYLRSVLED 259 (260)
T ss_pred HH---HHHHH----HcCCC-----CCCCCCC---CHHHHHHHHHHccCChhhCCCHHHHHHHhhc
Confidence 22 22111 11110 1111111 2346667779999999999999999999873
|
Protein Tyrosine Kinase (PTK) family; Lck and Blk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lck (lymphocyte-specific kinase) and Blk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Sr |
| >cd07875 STKc_JNK1 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 1 | Back alignment and domain information |
|---|
Probab=99.22 E-value=8.8e-12 Score=139.17 Aligned_cols=75 Identities=21% Similarity=0.202 Sum_probs=62.2
Q ss_pred CcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCCc
Q 038019 643 PNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSL 720 (866)
Q Consensus 643 ~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~ 720 (866)
.|++...+...++.|||.++..+.... .....||..|+|||++.+..++.++|||||||+++||+||+.|+....
T Consensus 155 ~NIll~~~~~~kL~DfG~a~~~~~~~~---~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~~ 229 (364)
T cd07875 155 SNIVVKSDCTLKILDFGLARTAGTSFM---MTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIKGGVLFPGTD 229 (364)
T ss_pred HHEEECCCCcEEEEeCCCccccCCCCc---ccCCcccCCcCCHHHHhCCCCCchhhHHhHHHHHHHHHhCCCCCCCCC
Confidence 467777777788999999988765432 223468999999999999999999999999999999999999997543
|
Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 1 (JNK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn |
| >cd06619 PKc_MKK5 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 5 | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.3e-11 Score=132.37 Aligned_cols=128 Identities=19% Similarity=0.235 Sum_probs=85.8
Q ss_pred cccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCCchhh
Q 038019 644 NIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSLDME 723 (866)
Q Consensus 644 ~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~~~ 723 (866)
|++...+...++.|||.+..+..+. .....||..|+|||++....++.++||||||++++||+||+.|+.......
T Consensus 125 Nill~~~~~~~l~dfg~~~~~~~~~----~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~~l~~g~~pf~~~~~~~ 200 (279)
T cd06619 125 NMLVNTRGQVKLCDFGVSTQLVNSI----AKTYVGTNAYMAPERISGEQYGIHSDVWSLGISFMELALGRFPYPQIQKNQ 200 (279)
T ss_pred HEEECCCCCEEEeeCCcceeccccc----ccCCCCChhhcCceeecCCCCCCcchHHHHHHHHHHHHhCCCCchhhcccc
Confidence 5666666678889999988775432 223468999999999999999999999999999999999999986533221
Q ss_pred hh-cHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 038019 724 KI-YLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAM 783 (866)
Q Consensus 724 ~~-~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~ 783 (866)
.. ....+..... .. ..+.+.. .....++.+++..|++.+|++||+++||++.
T Consensus 201 ~~~~~~~~~~~~~-~~-----~~~~~~~--~~~~~~~~~li~~~l~~~P~~Rp~~~eil~~ 253 (279)
T cd06619 201 GSLMPLQLLQCIV-DE-----DPPVLPV--GQFSEKFVHFITQCMRKQPKERPAPENLMDH 253 (279)
T ss_pred cccchHHHHHHHh-cc-----CCCCCCC--CcCCHHHHHHHHHHhhCChhhCCCHHHHhcC
Confidence 11 1111111111 00 1111111 0111235566779999999999999998764
|
Protein kinases (PKs), MAP kinase kinase 5 (MKK5) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK5, also referred to as MEK5, is a dual-specificity PK that p |
| >KOG0615 consensus Serine/threonine protein kinase Chk2 and related proteins [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.6e-12 Score=136.04 Aligned_cols=125 Identities=21% Similarity=0.256 Sum_probs=87.7
Q ss_pred cccCH---HHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCC---CchhHHHHHHHHHHHHHhcCCCCC
Q 038019 644 NIFGY---AELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHL---TEKADVFSFGVVALEIISGRASSD 717 (866)
Q Consensus 644 ~~~~~---~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~---t~ksDVySfGvvLlEl~tg~~p~~ 717 (866)
|++.- ++...++.|||+++.+|+|.| .+..+||++|.|||++.++.+ ..|+|+||+||||+-++||-.||.
T Consensus 306 NILl~~~~e~~llKItDFGlAK~~g~~sf---m~TlCGTpsYvAPEVl~~kg~~~~~~kVDiWSlGcvLfvcLsG~pPFS 382 (475)
T KOG0615|consen 306 NILLSNDAEDCLLKITDFGLAKVSGEGSF---MKTLCGTPSYVAPEVLASKGVEYYPSKVDIWSLGCVLFVCLSGYPPFS 382 (475)
T ss_pred eEEeccCCcceEEEecccchhhcccccee---hhhhcCCccccChhheecCCeecccchheeeeccceEEEEeccCCCcc
Confidence 55443 346678999999999998755 667789999999999986533 358899999999999999999997
Q ss_pred CCchhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 718 KSLDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 718 ~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
...... .+.+. +..|+.. +-| ....+-.++..+++-+.+..||++||+..|+++
T Consensus 383 ~~~~~~--sl~eQ----I~~G~y~--f~p---~~w~~Iseea~dlI~~mL~VdP~~R~s~~eaL~ 436 (475)
T KOG0615|consen 383 EEYTDP--SLKEQ----ILKGRYA--FGP---LQWDRISEEALDLINWMLVVDPENRPSADEALN 436 (475)
T ss_pred cccCCc--cHHHH----HhcCccc--ccC---hhhhhhhHHHHHHHHHhhEeCcccCcCHHHHhc
Confidence 544321 22222 2222221 111 112223345566666999999999999999875
|
|
| >PHA03209 serine/threonine kinase US3; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=2e-11 Score=135.80 Aligned_cols=71 Identities=23% Similarity=0.224 Sum_probs=56.3
Q ss_pred CcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCC
Q 038019 643 PNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASS 716 (866)
Q Consensus 643 ~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~ 716 (866)
.|++...+...++.|||.++...... ...+..||..|+|||++.+..++.++|||||||++|||+++..++
T Consensus 186 ~Nill~~~~~~kl~DfG~a~~~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvvl~ell~~~~~~ 256 (357)
T PHA03209 186 ENIFINDVDQVCIGDLGAAQFPVVAP---AFLGLAGTVETNAPEVLARDKYNSKADIWSAGIVLFEMLAYPSTI 256 (357)
T ss_pred HHEEECCCCCEEEecCccccccccCc---ccccccccccccCCeecCCCCCCchhhHHHHHHHHHHHHHcCCcc
Confidence 36666666667899999887544321 233557899999999999999999999999999999999976654
|
|
| >cd05074 PTKc_Tyro3 Catalytic domain of the Protein Tyrosine Kinase, Tyro3 | Back alignment and domain information |
|---|
Probab=99.21 E-value=5.8e-12 Score=134.44 Aligned_cols=129 Identities=19% Similarity=0.219 Sum_probs=88.8
Q ss_pred CcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHh-cCCCCCCCch
Q 038019 643 PNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIIS-GRASSDKSLD 721 (866)
Q Consensus 643 ~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~t-g~~p~~~~~~ 721 (866)
.|++...+...++.|||.++.+..+.+-.......++..|++||+...+.++.++||||||++++||++ |+.|+.....
T Consensus 142 ~nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~sDi~slG~il~el~~~g~~p~~~~~~ 221 (273)
T cd05074 142 RNCMLNENMTVCVADFGLSKKIYSGDYYRQGCASKLPVKWLALESLADNVYTTHSDVWAFGVTMWEIMTRGQTPYAGVEN 221 (273)
T ss_pred hhEEEcCCCCEEECcccccccccCCcceecCCCccCchhhcCHhHHhcCccchhhhhHHHHHHHHHHhhCCCCCCCCCCH
Confidence 356666666678899999887754432111112235578999999988889999999999999999999 8888764332
Q ss_pred hhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhc
Q 038019 722 MEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLAG 786 (866)
Q Consensus 722 ~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~~ 786 (866)
..+..+... +.. ... .......+.+++.+|++.+|++||++.+|.+.|++
T Consensus 222 ---~~~~~~~~~----~~~-----~~~---~~~~~~~~~~l~~~~l~~~p~~Rps~~~~~~~l~~ 271 (273)
T cd05074 222 ---SEIYNYLIK----GNR-----LKQ---PPDCLEDVYELMCQCWSPEPKCRPSFQHLRDQLEL 271 (273)
T ss_pred ---HHHHHHHHc----CCc-----CCC---CCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHh
Confidence 222322221 110 000 11123467778889999999999999999999985
|
Protein Tyrosine Kinase (PTK) family; Tyro3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyro3 (or Sky) is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Tyro3 is predominantly expressed in the central nervous system and the brain, and functions as a neurotrophic fac |
| >cd06609 STKc_MST3_like Catalytic domain of Mammalian Ste20-like protein kinase 3-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.3e-11 Score=131.78 Aligned_cols=123 Identities=23% Similarity=0.279 Sum_probs=83.8
Q ss_pred cccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCCchhh
Q 038019 644 NIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSLDME 723 (866)
Q Consensus 644 ~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~~~ 723 (866)
|++..++...++.|||.+..++... .......|+..|+|||+..+..++.++|||||||++|||+||+.|+....+..
T Consensus 128 ni~i~~~~~~~l~d~g~~~~~~~~~--~~~~~~~~~~~y~~PE~~~~~~~~~~sDv~slG~il~~l~tg~~p~~~~~~~~ 205 (274)
T cd06609 128 NILLSEEGDVKLADFGVSGQLTSTM--SKRNTFVGTPFWMAPEVIKQSGYDEKADIWSLGITAIELAKGEPPLSDLHPMR 205 (274)
T ss_pred HEEECCCCCEEEcccccceeecccc--cccccccCCccccChhhhccCCCCchhhHHHHHHHHHHHHhCCCCcccCchHH
Confidence 5555555566788999888876532 11223468889999999999899999999999999999999999987533211
Q ss_pred hhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 724 KIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 724 ~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
.... ...+ ..+.+.... ....+.++...|++.+|++||+|++|++
T Consensus 206 ------~~~~-~~~~-----~~~~~~~~~--~~~~~~~~l~~~l~~~p~~Rpt~~~il~ 250 (274)
T cd06609 206 ------VLFL-IPKN-----NPPSLEGNK--FSKPFKDFVSLCLNKDPKERPSAKELLK 250 (274)
T ss_pred ------HHHH-hhhc-----CCCCCcccc--cCHHHHHHHHHHhhCChhhCcCHHHHhh
Confidence 1111 1111 112221110 1223555677999999999999999976
|
Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST3, MST4, STK25, Schizosaccharomyces pombe Nak1 and Sid1, Saccharomyces cerevisiae sporulation-specific protein 1 (SPS1), and related proteins. Nak1 is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Sid1 is a component in the septation initiation network (SIN) |
| >cd05103 PTKc_VEGFR2 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 2 | Back alignment and domain information |
|---|
Probab=99.20 E-value=5.7e-12 Score=139.39 Aligned_cols=133 Identities=22% Similarity=0.229 Sum_probs=89.2
Q ss_pred CCCcccCHHHHHHHhcCCccccccCCCCceeEEEe-ecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHh-cCCCCCC
Q 038019 641 SKPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKV-TANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIIS-GRASSDK 718 (866)
Q Consensus 641 ~~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~-~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~t-g~~p~~~ 718 (866)
...|++..++...++.|||.++.+..... ....+ ..+++.|+|||+.....++.++|||||||+++||++ |..|+..
T Consensus 206 kp~Nil~~~~~~~kl~dfg~~~~~~~~~~-~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~ 284 (343)
T cd05103 206 AARNILLSENNVVKICDFGLARDIYKDPD-YVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPG 284 (343)
T ss_pred ccCeEEEcCCCcEEEEecccccccccCcc-hhhcCCCCCCcceECcHHhcCCCCCchhhHHHHHHHHHHHHHCCCCCCCC
Confidence 33467776667788999998887643321 11111 235678999999988999999999999999999997 8888764
Q ss_pred CchhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhcCc
Q 038019 719 SLDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLAGDI 788 (866)
Q Consensus 719 ~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~~~~ 788 (866)
...... .......+.. +...... ...+.+++..||+.+|++||+|.||++.|+...
T Consensus 285 ~~~~~~------~~~~~~~~~~-----~~~~~~~---~~~~~~~~~~cl~~~p~~Rps~~eil~~l~~~~ 340 (343)
T cd05103 285 VKIDEE------FCRRLKEGTR-----MRAPDYT---TPEMYQTMLDCWHGEPSQRPTFSELVEHLGNLL 340 (343)
T ss_pred ccccHH------HHHHHhccCC-----CCCCCCC---CHHHHHHHHHHccCChhhCcCHHHHHHHHHHHH
Confidence 322111 1111222211 1111111 124667788999999999999999999998543
|
Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 2 (VEGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR2 (or Flk1) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. The carboxyl terminus of VEGFR2 plays an important role in its autophosp |
| >cd05595 STKc_PKB_beta Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B beta | Back alignment and domain information |
|---|
Probab=99.20 E-value=3.5e-11 Score=131.94 Aligned_cols=122 Identities=19% Similarity=0.185 Sum_probs=82.0
Q ss_pred CcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCCchh
Q 038019 643 PNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSLDM 722 (866)
Q Consensus 643 ~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~~ 722 (866)
.|++...+...++.|||.++...... .......||+.|||||++..+.++.++|||||||+++||+||+.|+......
T Consensus 124 ~NIll~~~~~~kL~Dfg~~~~~~~~~--~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~ 201 (323)
T cd05595 124 ENLMLDKDGHIKITDFGLCKEGISDG--ATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHE 201 (323)
T ss_pred HHEEEcCCCCEEecccHHhccccCCC--CccccccCCcCcCCcccccCCCCCchhchhhhHHHHHHHHhCCCCCCCCCHH
Confidence 46777667778889999877532211 2223456899999999999999999999999999999999999998754322
Q ss_pred hhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCC-----CHHHHHH
Q 038019 723 EKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRP-----PMSRVVA 782 (866)
Q Consensus 723 ~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RP-----sm~~V~~ 782 (866)
. +.+.+ .. + +..+.....++ +.++...|++.+|++|| ++.++++
T Consensus 202 ~---~~~~~---~~-~------~~~~p~~~~~~---~~~li~~~L~~dP~~R~~~~~~~~~~~l~ 250 (323)
T cd05595 202 R---LFELI---LM-E------EIRFPRTLSPE---AKSLLAGLLKKDPKQRLGGGPSDAKEVME 250 (323)
T ss_pred H---HHHHH---hc-C------CCCCCCCCCHH---HHHHHHHHccCCHHHhCCCCCCCHHHHHc
Confidence 1 11111 10 1 01111111223 34455589999999998 7777754
|
Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, beta (or Akt2) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-beta is the predominant PKB isoform expressed in insulin-responsive tissues. It plays a critical role in the regulation of glucose homeostasis. It is also implicated in muscle cell differentiation. Mice deficient in |
| >cd05039 PTKc_Csk_like Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Probab=99.20 E-value=2.4e-11 Score=128.33 Aligned_cols=126 Identities=22% Similarity=0.289 Sum_probs=88.6
Q ss_pred CCCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHh-cCCCCCCC
Q 038019 641 SKPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIIS-GRASSDKS 719 (866)
Q Consensus 641 ~~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~t-g~~p~~~~ 719 (866)
...|++...+...++.|||.++....+.. ...++.+|+|||+...+.++.++||||||++++|+++ |+.|+...
T Consensus 129 ~p~Nili~~~~~~~l~d~g~~~~~~~~~~-----~~~~~~~~~ape~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~ 203 (256)
T cd05039 129 AARNVLVSEDLVAKVSDFGLAKEASQGQD-----SGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRI 203 (256)
T ss_pred ccceEEEeCCCCEEEcccccccccccccc-----cCCCcccccCchhhcCCcCCcHHHHHHHHHHHHHHHhcCCCCCCCC
Confidence 33467777777778899999887754322 2235678999999999999999999999999999998 99998654
Q ss_pred chhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhc
Q 038019 720 LDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLAG 786 (866)
Q Consensus 720 ~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~~ 786 (866)
...+ +...+ ..+.. +.. +......+.+++.+|++.+|++||++.||+++|+.
T Consensus 204 ~~~~---~~~~~----~~~~~-----~~~---~~~~~~~~~~li~~~l~~~p~~Rp~~~~l~~~l~~ 255 (256)
T cd05039 204 PLKD---VVPHV----EKGYR-----MEA---PEGCPPEVYKVMKDCWELDPAKRPTFKQLREQLAL 255 (256)
T ss_pred CHHH---HHHHH----hcCCC-----CCC---ccCCCHHHHHHHHHHhccChhhCcCHHHHHHHHhc
Confidence 3221 22211 11110 111 11112445667779999999999999999999974
|
Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk |
| >cd05081 PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3 | Back alignment and domain information |
|---|
Probab=99.20 E-value=5e-12 Score=135.87 Aligned_cols=137 Identities=21% Similarity=0.218 Sum_probs=86.0
Q ss_pred CCcccCHHHHHHHhcCCccccccCCCCce-eEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCCc
Q 038019 642 KPNIFGYAELRSATKDFNRSNKLGEGGYG-PVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSL 720 (866)
Q Consensus 642 ~~~~~~~~~~~~~~~dF~~~~~lg~g~~g-~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~ 720 (866)
..|++..++...++.|||.++.+..+... .+-....++..|+|||+...+.++.++|||||||+++||++|+.+.....
T Consensus 136 p~nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~~~~~~~~~ 215 (284)
T cd05081 136 TRNILVESENRVKIGDFGLTKVLPQDKEYYKVREPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYSDKSCSPP 215 (284)
T ss_pred HhhEEECCCCeEEECCCcccccccCCCcceeecCCCCCceEeeCHHHhccCCcChHHHHHHHHHHHHHHhhcCCcCCCcc
Confidence 34667666667789999999887554321 11111123446999999998899999999999999999999887653221
Q ss_pred hhh---------hhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhc
Q 038019 721 DME---------KIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLAG 786 (866)
Q Consensus 721 ~~~---------~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~~ 786 (866)
..- ......+.......+. .. .........+.+++.+||+.+|++||||.||+++|+.
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~-~~~~~~~~~~~~li~~cl~~~p~~Rpt~~ei~~~l~~ 282 (284)
T cd05081 216 AEFMRMMGNDKQGQMIVYHLIELLKNNG-------RL-PAPPGCPAEIYAIMKECWNNDPSQRPSFSELALQVEA 282 (284)
T ss_pred hhhhhhcccccccccchHHHHHHHhcCC-------cC-CCCCCCCHHHHHHHHHHccCChhhCCCHHHHHHHHHh
Confidence 000 0000000111111110 00 0011122346677889999999999999999999984
|
Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as th |
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=2e-11 Score=149.85 Aligned_cols=116 Identities=15% Similarity=0.194 Sum_probs=75.2
Q ss_pred HHHHHhcCCccccccCCC--------------CceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCC
Q 038019 650 ELRSATKDFNRSNKLGEG--------------GYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRAS 715 (866)
Q Consensus 650 ~~~~~~~dF~~~~~lg~g--------------~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p 715 (866)
+...++.|||.++....- .++.......||+.|||||++.+..++.++|||||||+|+||++|+.|
T Consensus 135 ~~~~ki~DfG~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~~~~~~~~~~sDVwSlGviL~ELl~~~~~ 214 (793)
T PLN00181 135 DATTKSREIGSSRREEILSERRIEKLEEVKKQPFPMKQILAMEMSWYTSPEEDNGSSSNCASDVYRLGVLLFELFCPVSS 214 (793)
T ss_pred cCcccccccccccccccccccchhhhhccccCCCcccccccCCCcceEChhhhccCCCCchhhhhhHHHHHHHHhhCCCc
Confidence 445677888887754210 011111123688999999999999999999999999999999999887
Q ss_pred CCCCchhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 716 SDKSLDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 716 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
+.... ..+..+.. ..+++.. .....+...++.+|++.+|.+||+|.||++
T Consensus 215 ~~~~~----~~~~~~~~---------~~~~~~~----~~~~~~~~~~~~~~L~~~P~~Rps~~eil~ 264 (793)
T PLN00181 215 REEKS----RTMSSLRH---------RVLPPQI----LLNWPKEASFCLWLLHPEPSCRPSMSELLQ 264 (793)
T ss_pred hhhHH----HHHHHHHH---------hhcChhh----hhcCHHHHHHHHHhCCCChhhCcChHHHhh
Confidence 54211 01111111 0111211 111233456677899999999999999975
|
|
| >cd05047 PTKc_Tie Catalytic domain of Tie Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Probab=99.20 E-value=4.6e-12 Score=135.06 Aligned_cols=127 Identities=20% Similarity=0.154 Sum_probs=84.5
Q ss_pred CcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHh-cCCCCCCCch
Q 038019 643 PNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIIS-GRASSDKSLD 721 (866)
Q Consensus 643 ~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~t-g~~p~~~~~~ 721 (866)
.|++..++...++.|||.++........ .....+..|+|||+.....++.++|||||||+++||+| |+.|+.....
T Consensus 141 ~nili~~~~~~kl~dfgl~~~~~~~~~~---~~~~~~~~y~apE~~~~~~~~~~~Di~slG~il~el~~~g~~pf~~~~~ 217 (270)
T cd05047 141 RNILVGENYVAKIADFGLSRGQEVYVKK---TMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMTC 217 (270)
T ss_pred ceEEEcCCCeEEECCCCCccccchhhhc---cCCCCccccCChHHHccCCCCchhhHHHHHHHHHHHHcCCCCCccccCH
Confidence 4666666777788999987532211000 01123567999999988899999999999999999997 9999864332
Q ss_pred hhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhcC
Q 038019 722 MEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLAGD 787 (866)
Q Consensus 722 ~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~~~ 787 (866)
.+ +.+. ...+.. ... .......+.+++.+|++.+|.+||+|.+|+++|+..
T Consensus 218 ~~---~~~~----~~~~~~-----~~~---~~~~~~~~~~li~~~l~~~p~~Rps~~~il~~l~~~ 268 (270)
T cd05047 218 AE---LYEK----LPQGYR-----LEK---PLNCDDEVYDLMRQCWREKPYERPSFAQILVSLNRM 268 (270)
T ss_pred HH---HHHH----HhCCCC-----CCC---CCcCCHHHHHHHHHHcccChhhCCCHHHHHHHHHHh
Confidence 11 1111 111110 001 111123456788899999999999999999999754
|
Protein Tyrosine Kinase (PTK) family; Tie subfamily; catalytic (c) domain. The Tie subfamily consists of Tie1 and Tie2. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie proteins are receptor tyr kinases (RTKs) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2, while no specific l |
| >cd06613 STKc_MAP4K3_like Catalytic domain of Mitogen-activated protein kinase kinase kinase kinase-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.20 E-value=2.2e-11 Score=129.04 Aligned_cols=126 Identities=19% Similarity=0.238 Sum_probs=85.2
Q ss_pred cccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecC---CCCchhHHHHHHHHHHHHHhcCCCCCCCc
Q 038019 644 NIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRG---HLTEKADVFSFGVVALEIISGRASSDKSL 720 (866)
Q Consensus 644 ~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~---~~t~ksDVySfGvvLlEl~tg~~p~~~~~ 720 (866)
|++..++...++.|||.+..+.... .......++..|+|||..... .++.++|||||||+++||+||+.|+....
T Consensus 131 ni~i~~~~~~~l~d~g~~~~~~~~~--~~~~~~~~~~~y~~Pe~~~~~~~~~~~~~~Di~slG~~l~~~~tg~~p~~~~~ 208 (262)
T cd06613 131 NILLTEDGDVKLADFGVSAQLTATI--AKRKSFIGTPYWMAPEVAAVERKGGYDGKCDIWALGITAIELAELQPPMFDLH 208 (262)
T ss_pred hEEECCCCCEEECccccchhhhhhh--hccccccCCccccCchhhcccccCCcCchhhhHHHHHHHHHHHhCCCCCCCCC
Confidence 5666666667789999887765432 223445688899999998776 89999999999999999999999987543
Q ss_pred hhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 721 DMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 721 ~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
..... .. ... . +...+.+ .........+.+++.+|++.+|.+||++.+|+.
T Consensus 209 ~~~~~--~~----~~~-~---~~~~~~~-~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~il~ 259 (262)
T cd06613 209 PMRAL--FL----ISK-S---NFPPPKL-KDKEKWSPVFHDFIKKCLTKDPKKRPTATKLLQ 259 (262)
T ss_pred HHHHH--HH----HHh-c---cCCCccc-cchhhhhHHHHHHHHHHcCCChhhCCCHHHHhc
Confidence 32211 11 000 0 0111111 111222345667788999999999999999874
|
Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily includes MAP4K3, MAP4K1, MAP4K2, MAP4K5, and related proteins. Vertebrate members contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activ |
| >cd07853 STKc_NLK Catalytic domain of the Serine/Threonine Kinase, Nemo-Like Kinase | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.2e-11 Score=138.59 Aligned_cols=140 Identities=16% Similarity=0.111 Sum_probs=86.0
Q ss_pred CCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeec-CCCCchhHHHHHHHHHHHHHhcCCCCCCCc
Q 038019 642 KPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMR-GHLTEKADVFSFGVVALEIISGRASSDKSL 720 (866)
Q Consensus 642 ~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~-~~~t~ksDVySfGvvLlEl~tg~~p~~~~~ 720 (866)
..|++...+...++.|||.++....... .......+|..|+|||++.+ ..++.++|||||||+++||++|+.|+....
T Consensus 131 p~Nili~~~~~~kL~Dfg~a~~~~~~~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~ 209 (372)
T cd07853 131 PGNLLVNSNCVLKICDFGLARVEEPDES-KHMTQEVVTQYYRAPEILMGSRHYTSAVDIWSVGCIFAELLGRRILFQAQS 209 (372)
T ss_pred hHHEEECCCCCEEeccccceeecccCcc-ccCCCCCcCCCcCCHHHHcCCCCCCcHHHHHhHHHHHHHHHcCCCCCCCCC
Confidence 3467777777788999998876543321 11223357889999998876 457999999999999999999999997654
Q ss_pred hhhhhcHHHH----------------HHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 721 DMEKIYLLEW----------------AWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 721 ~~~~~~l~~~----------------~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
..+....+.. +...........-..+.+.....+....+.+++.+|++.||++|||+.|+++
T Consensus 210 ~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~mL~~dP~~R~t~~e~l~ 287 (372)
T cd07853 210 PIQQLDLITDLLGTPSLEAMRSACEGARAHILRGPHKPPSLPVLYTLSSQATHEAVHLLCRMLVFDPDKRISAADALA 287 (372)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHhhHHHHHHHHhCCCCCCchHHhcccCCCCCHHHHHHHHHhCCCChhhCcCHHHHhc
Confidence 3322111111 0111100000000000000001111234566778999999999999999975
|
Serine/Threonine Kinases (STKs), Nemo-Like Kinase (NLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mitogen-activated protein kinases (MAPKs) are important mediators of cellular responses to extracellular signals. NLK is an atypical MAPK that is not regulated by a MAPK kinase. It functions downstream of the MAPK kinase kinase Tak1, which also plays a role in activating the JNK and p38 MAPKs. The Tak1/NLK pathways are regulated by Wnts, a family of secreted proteins that is critical in the control of asymmetric division and cell polarity. NLK can phosphorylate transcription |
| >cd07863 STKc_CDK4 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 4 | Back alignment and domain information |
|---|
Probab=99.19 E-value=9.6e-12 Score=133.90 Aligned_cols=136 Identities=13% Similarity=0.087 Sum_probs=84.8
Q ss_pred cccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCCchhh
Q 038019 644 NIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSLDME 723 (866)
Q Consensus 644 ~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~~~ 723 (866)
|++...+...++.|||.++.+..... .....||..|+|||++.+..++.++|||||||+++||++|+.|+......+
T Consensus 138 Nili~~~~~~kl~dfg~~~~~~~~~~---~~~~~~~~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~~g~~~f~~~~~~~ 214 (288)
T cd07863 138 NILVTSGGQVKLADFGLARIYSCQMA---LTPVVVTLWYRAPEVLLQSTYATPVDMWSVGCIFAEMFRRKPLFCGNSEAD 214 (288)
T ss_pred HEEECCCCCEEECccCccccccCccc---CCCccccccccCchHhhCCCCCCcchhhhHHHHHHHHHhCCcCcCCCCHHH
Confidence 56666666678899999887754321 223457899999999998899999999999999999999999986543322
Q ss_pred hh-cHHHHHH----HHhhc-CCc-ccccCCcc----cccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 724 KI-YLLEWAW----NLHEN-NQS-FGLVDPTL----TEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 724 ~~-~l~~~~~----~~~~~-~~~-~~~~d~~l----~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
.. .+..+.. ..+.. ... .....+.. .....+....+.++...|++.||++||++.|++.
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~~~l~ 284 (288)
T cd07863 215 QLGKIFDLIGLPPEDDWPRDVTLPRGAFSPRGPRPVQSVVPEIEESGAQLLLEMLTFNPHKRISAFRALQ 284 (288)
T ss_pred HHHHHHHHhCCCChhhCcccccccccccCCCCCCchHHhCcCcCHHHHHHHHHHhccCcccCCCHHHHhc
Confidence 11 1111100 00000 000 00111111 0011111234567778999999999999999874
|
Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 partners with all three D-type cyclins (D1, D2, and D3) and is also regulated by INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein and plays a role in regulating the early G1 phase of the cell cycle. It is expressed ubiquitou |
| >cd05575 STKc_SGK Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.5e-11 Score=134.89 Aligned_cols=118 Identities=17% Similarity=0.110 Sum_probs=79.6
Q ss_pred CcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCCchh
Q 038019 643 PNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSLDM 722 (866)
Q Consensus 643 ~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~~ 722 (866)
.|++...+...++.|||.++..-... .......||+.|||||++.+..++.++|||||||+++||++|+.|+......
T Consensus 125 ~NIll~~~~~~kl~Dfg~~~~~~~~~--~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~ell~g~~pf~~~~~~ 202 (323)
T cd05575 125 ENILLDSQGHVVLTDFGLCKEGIEHS--KTTSTFCGTPEYLAPEVLRKQPYDRTVDWWCLGAVLYEMLYGLPPFYSRDTA 202 (323)
T ss_pred HHeEECCCCcEEEeccCCCcccccCC--CccccccCChhhcChhhhcCCCCCccccccccchhhhhhhcCCCCCCCCCHH
Confidence 46777677778899999876532211 1223346899999999999999999999999999999999999998753221
Q ss_pred hhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHH
Q 038019 723 EKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMS 778 (866)
Q Consensus 723 ~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~ 778 (866)
+ ....... +.. .+.+ .. . ..+.++...|++.+|++||++.
T Consensus 203 ~------~~~~i~~-~~~--~~~~---~~-~---~~~~~li~~~l~~~p~~R~~~~ 242 (323)
T cd05575 203 E------MYDNILN-KPL--RLKP---NI-S---VSARHLLEGLLQKDRTKRLGAK 242 (323)
T ss_pred H------HHHHHHc-CCC--CCCC---CC-C---HHHHHHHHHHhhcCHHhCCCCC
Confidence 1 1111111 110 0111 11 2 2344556699999999999985
|
Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGKs are activated by insulin and growth factors via phosphoinositide 3-kinase and PDK1. They activate ion channels, ion carriers, and the Na-K-ATPase, as well as regulate the activity of enzymes and transcription factors. SGKs play important roles in transport, hormone release, neuroexcitability, cell pr |
| >KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.19 E-value=2e-11 Score=135.95 Aligned_cols=117 Identities=20% Similarity=0.205 Sum_probs=85.7
Q ss_pred CcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCCchh
Q 038019 643 PNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSLDM 722 (866)
Q Consensus 643 ~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~~ 722 (866)
-|++++.+...++.|||+.+..- ++|.......||+-|||||.+....|+..+|.|||||+|+||+.|..||.....+
T Consensus 497 dNiLLD~eGh~kiADFGlcKe~m--~~g~~TsTfCGTpey~aPEil~e~~Yt~aVDWW~lGVLlyeML~Gq~PF~gddEe 574 (694)
T KOG0694|consen 497 DNLLLDTEGHVKIADFGLCKEGM--GQGDRTSTFCGTPEFLAPEVLTEQSYTRAVDWWGLGVLLYEMLVGESPFPGDDEE 574 (694)
T ss_pred hheEEcccCcEEecccccccccC--CCCCccccccCChhhcChhhhccCcccchhhHHHHHHHHHHHHcCCCCCCCCCHH
Confidence 48899999999999999987642 2334445568999999999999999999999999999999999999999865433
Q ss_pred hhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCH
Q 038019 723 EKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPM 777 (866)
Q Consensus 723 ~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm 777 (866)
+ +.+-+. ..|+..+.+-..|+.. |..+-+..+|++|-.+
T Consensus 575 e---~FdsI~----------~d~~~yP~~ls~ea~~---il~~ll~k~p~kRLG~ 613 (694)
T KOG0694|consen 575 E---VFDSIV----------NDEVRYPRFLSKEAIA---IMRRLLRKNPEKRLGS 613 (694)
T ss_pred H---HHHHHh----------cCCCCCCCcccHHHHH---HHHHHhccCcccccCC
Confidence 2 222111 1223333333334443 4446778999999887
|
|
| >KOG0983 consensus Mitogen-activated protein kinase (MAPK) kinase MKK7/JNKK2 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.4e-11 Score=122.29 Aligned_cols=134 Identities=19% Similarity=0.201 Sum_probs=90.5
Q ss_pred hhhccCCCCCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeee---cCCCCchhHHHHHHHHHHHHH
Q 038019 634 EVLVGIGSKPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAM---RGHLTEKADVFSFGVVALEII 710 (866)
Q Consensus 634 ~~~~~~~~~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~---~~~~t~ksDVySfGvvLlEl~ 710 (866)
.++++.....||+.++....++.|||++-.+-+. ....-.+|...|||||.+. .-+|+-++|||||||.|.||+
T Consensus 212 ~viHRDvKPSNILlDe~GniKlCDFGIsGrlvdS---kAhtrsAGC~~YMaPERidp~~~~kYDiRaDVWSlGITlveLa 288 (391)
T KOG0983|consen 212 GVIHRDVKPSNILLDERGNIKLCDFGISGRLVDS---KAHTRSAGCAAYMAPERIDPPDKPKYDIRADVWSLGITLVELA 288 (391)
T ss_pred ceeecccCccceEEccCCCEEeecccccceeecc---cccccccCCccccCccccCCCCCCccchhhhhhhhccchhhhh
Confidence 3455556667999999999999999988655432 1222347889999999886 458899999999999999999
Q ss_pred hcCCCCCCCchhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 711 SGRASSDKSLDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 711 tg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
||+.||..... +......+.. -..|.|.... .-...+.+....|++.|+.+||.-.++++
T Consensus 289 Tg~yPy~~c~t--dFe~ltkvln---------~ePP~L~~~~-gFSp~F~~fv~~CL~kd~r~RP~Y~~Ll~ 348 (391)
T KOG0983|consen 289 TGQYPYKGCKT--DFEVLTKVLN---------EEPPLLPGHM-GFSPDFQSFVKDCLTKDHRKRPKYNKLLE 348 (391)
T ss_pred cccCCCCCCCc--cHHHHHHHHh---------cCCCCCCccc-CcCHHHHHHHHHHhhcCcccCcchHHHhc
Confidence 99999975321 1111211111 1124442111 11223444445899999999999887653
|
|
| >KOG0598 consensus Ribosomal protein S6 kinase and related proteins [General function prediction only; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.2e-11 Score=128.63 Aligned_cols=116 Identities=16% Similarity=0.207 Sum_probs=83.8
Q ss_pred CcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCCchh
Q 038019 643 PNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSLDM 722 (866)
Q Consensus 643 ~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~~ 722 (866)
-|++.+++...++.|||+++.--.+ |.+....+||+-|||||++.+..++..+|.||+||+++||+||.+||....
T Consensus 154 ENILLd~~GHi~LtDFgL~k~~~~~--~~~t~tfcGT~eYmAPEil~~~gy~~~vDWWsLGillYeML~G~pPF~~~~-- 229 (357)
T KOG0598|consen 154 ENILLDEQGHIKLTDFGLCKEDLKD--GDATRTFCGTPEYMAPEILLGKGYDKAVDWWSLGILLYEMLTGKPPFYAED-- 229 (357)
T ss_pred HHeeecCCCcEEEeccccchhcccC--CCccccccCCccccChHHHhcCCCCcccchHhHHHHHHHHhhCCCCCcCcc--
Confidence 3889999999999999999854433 245666899999999999999999999999999999999999999997532
Q ss_pred hhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCC
Q 038019 723 EKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRP 775 (866)
Q Consensus 723 ~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RP 775 (866)
..++...... ++. +..+.+...++..+++ .-+..+|++|-
T Consensus 230 ----~~~~~~~I~~-~k~-----~~~p~~ls~~ardll~---~LL~rdp~~RL 269 (357)
T KOG0598|consen 230 ----VKKMYDKILK-GKL-----PLPPGYLSEEARDLLK---KLLKRDPRQRL 269 (357)
T ss_pred ----HHHHHHHHhc-CcC-----CCCCccCCHHHHHHHH---HHhccCHHHhc
Confidence 2333333222 211 1112223344444444 45678999995
|
|
| >KOG4257 consensus Focal adhesion tyrosine kinase FAK, contains FERM domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.1e-11 Score=135.42 Aligned_cols=125 Identities=25% Similarity=0.328 Sum_probs=93.2
Q ss_pred cccCHHHHHHHhcCCccccccCCCCceeEEEeecC--CCCccCceeeecCCCCchhHHHHHHHHHHHHHh-cCCCCCCCc
Q 038019 644 NIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTAN--SYGYLAPEYAMRGHLTEKADVFSFGVVALEIIS-GRASSDKSL 720 (866)
Q Consensus 644 ~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~g--t~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~t-g~~p~~~~~ 720 (866)
|++.-.---.++.|||+++.+.... +|++..| .+.|||||-+..+++|..||||-|||.+||++. |.+||....
T Consensus 521 NiLVsSp~CVKLaDFGLSR~~ed~~---yYkaS~~kLPIKWmaPESINfRrFTtASDVWMFgVCmWEIl~lGvkPfqgvk 597 (974)
T KOG4257|consen 521 NILVSSPQCVKLADFGLSRYLEDDA---YYKASRGKLPIKWMAPESINFRRFTTASDVWMFGVCMWEILSLGVKPFQGVK 597 (974)
T ss_pred heeecCcceeeecccchhhhccccc---hhhccccccceeecCccccchhcccchhhHHHHHHHHHHHHHhcCCcccccc
Confidence 4444444456789999999998765 4666544 468999999999999999999999999999887 999987543
Q ss_pred hhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhc
Q 038019 721 DMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLAG 786 (866)
Q Consensus 721 ~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~~ 786 (866)
..+.. ..++.|. ++ ..++.+...+.-++-+||+.+|.+||.+.|+...|+.
T Consensus 598 NsDVI-------~~iEnGe-------Rl-P~P~nCPp~LYslmskcWayeP~kRPrftei~~~lsd 648 (974)
T KOG4257|consen 598 NSDVI-------GHIENGE-------RL-PCPPNCPPALYSLMSKCWAYEPSKRPRFTEIKAILSD 648 (974)
T ss_pred ccceE-------EEecCCC-------CC-CCCCCCChHHHHHHHHHhccCcccCCcHHHHHHHHHH
Confidence 32211 1122221 11 2345566777888899999999999999999887764
|
|
| >cd05614 STKc_MSK2_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 2 | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.6e-11 Score=133.60 Aligned_cols=127 Identities=17% Similarity=0.160 Sum_probs=82.1
Q ss_pred CcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecC-CCCchhHHHHHHHHHHHHHhcCCCCCCCch
Q 038019 643 PNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRG-HLTEKADVFSFGVVALEIISGRASSDKSLD 721 (866)
Q Consensus 643 ~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~-~~t~ksDVySfGvvLlEl~tg~~p~~~~~~ 721 (866)
.|++...+...++.|||.++....+.... .....||.+|||||++.+. .++.++|||||||+++||+||+.|+.....
T Consensus 134 ~Nili~~~~~~kl~DfG~~~~~~~~~~~~-~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~~ 212 (332)
T cd05614 134 ENILLDSEGHVVLTDFGLSKEFLSEEKER-TYSFCGTIEYMAPEIIRGKGGHGKAVDWWSLGILIFELLTGASPFTLEGE 212 (332)
T ss_pred HHeEECCCCCEEEeeCcCCccccccCCCc-cccccCCccccCHHHhcCCCCCCCccccccchhhhhhhhcCCCCCCCCCC
Confidence 36777667778899999988664432211 1234689999999998764 478999999999999999999999864322
Q ss_pred hhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCC-----CHHHHHH
Q 038019 722 MEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRP-----PMSRVVA 782 (866)
Q Consensus 722 ~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RP-----sm~~V~~ 782 (866)
... ...+...... .++.+......+ +.++..+|++.||++|| ++.++++
T Consensus 213 ~~~---~~~~~~~~~~------~~~~~~~~~~~~---~~~li~~~l~~dp~~R~~~~~~~~~~~l~ 266 (332)
T cd05614 213 RNT---QSEVSRRILK------CDPPFPSFIGPE---AQDLLHKLLRKDPKKRLGAGPQGASEIKE 266 (332)
T ss_pred CCC---HHHHHHHHhc------CCCCCCCCCCHH---HHHHHHHHcCCCHHHcCCCCCCCHHHHHc
Confidence 111 1111111111 122222222223 34455699999999999 5556653
|
Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK2, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph |
| >cd07876 STKc_JNK2 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 2 | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.3e-11 Score=135.45 Aligned_cols=75 Identities=19% Similarity=0.189 Sum_probs=60.5
Q ss_pred CCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCC
Q 038019 642 KPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKS 719 (866)
Q Consensus 642 ~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~ 719 (866)
..|++...+...++.|||.++....... .....||..|+|||.+.+..++.++|||||||+++||+||+.|+...
T Consensus 151 p~NIl~~~~~~~kl~Dfg~a~~~~~~~~---~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~el~tg~~pf~~~ 225 (359)
T cd07876 151 PSNIVVKSDCTLKILDFGLARTACTNFM---MTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGELVKGSVIFQGT 225 (359)
T ss_pred HHHEEECCCCCEEEecCCCccccccCcc---CCCCcccCCCCCchhccCCCCCcchhhHHHHHHHHHHHhCCCCCCCC
Confidence 3467777777788999999876543321 22346789999999999999999999999999999999999999754
|
Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 2 (JNK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn |
| >cd07833 STKc_CDKL Catalytic domain of Cyclin-Dependent protein Kinase Like Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.18 E-value=7.2e-12 Score=134.81 Aligned_cols=138 Identities=17% Similarity=0.215 Sum_probs=87.6
Q ss_pred cccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecC-CCCchhHHHHHHHHHHHHHhcCCCCCCCchh
Q 038019 644 NIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRG-HLTEKADVFSFGVVALEIISGRASSDKSLDM 722 (866)
Q Consensus 644 ~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~-~~t~ksDVySfGvvLlEl~tg~~p~~~~~~~ 722 (866)
|++..++...++.|||.+..+..... ..+....++..|+|||++.+. .++.++||||||++++||++|+.|+......
T Consensus 130 ni~~~~~~~~kl~d~g~~~~~~~~~~-~~~~~~~~~~~~~~PE~~~~~~~~~~~~Dv~slG~~l~~l~~g~~~~~~~~~~ 208 (288)
T cd07833 130 NILVSESGVLKLCDFGFARALRARPA-SPLTDYVATRWYRAPELLVGDTNYGKPVDVWAIGCIMAELLDGEPLFPGDSDI 208 (288)
T ss_pred HeEECCCCCEEEEeeecccccCCCcc-ccccCcccccCCcCCchhcCCCCcCchhhHHHHHHHHHHHHhCCCCCCCCCHH
Confidence 56666666778899998887765432 233344678899999999888 8899999999999999999999998754332
Q ss_pred hhhcHHHHHHHH--------h-hcCC-----cccccCCcc-c-ccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 723 EKIYLLEWAWNL--------H-ENNQ-----SFGLVDPTL-T-EFNDKEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 723 ~~~~l~~~~~~~--------~-~~~~-----~~~~~d~~l-~-~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
+......+.... . .... ..+..++.. . .++......+.+++..|++.+|++||+|++|++
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~il~ 284 (288)
T cd07833 209 DQLYLIQKCLGPLPPSHQELFSSNPRFAGVAFPEPSQPESLERRYPGKVSSPALDFLKACLRMDPKERLTCDELLQ 284 (288)
T ss_pred HHHHHHHHHhCCCCHHHhhhcccCccccccccCCCCCcHHHHHhcCCccchHHHHHHHHHhccCchhcccHHHHhc
Confidence 211111111000 0 0000 001111100 0 011112355677888999999999999999875
|
Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like (CDKL) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDKL1-5 and similar proteins. Some CDKLs, like CDKL1 and CDKL3, may be implicated in transformation and others, like CDKL3 and CDKL5, are associated with mental retardation when impaired. CDKL2 plays a role in learning |
| >cd05066 PTKc_EphR_A Catalytic domain of the Protein Tyrosine Kinases, Class EphA Ephrin Receptors | Back alignment and domain information |
|---|
Probab=99.18 E-value=9.2e-12 Score=132.51 Aligned_cols=129 Identities=22% Similarity=0.302 Sum_probs=88.9
Q ss_pred CcccCHHHHHHHhcCCccccccCCCCceeEEEee--cCCCCccCceeeecCCCCchhHHHHHHHHHHHHHh-cCCCCCCC
Q 038019 643 PNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVT--ANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIIS-GRASSDKS 719 (866)
Q Consensus 643 ~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~--~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~t-g~~p~~~~ 719 (866)
.|++...+...++.|||.++.+..+.. ..+... .++..|+|||++..+.++.++||||||++++|+++ |+.|+...
T Consensus 135 ~nili~~~~~~~l~dfg~~~~~~~~~~-~~~~~~~~~~~~~y~~pe~~~~~~~~~~~Dv~slG~~l~ell~~g~~p~~~~ 213 (267)
T cd05066 135 RNILVNSNLVCKVSDFGLSRVLEDDPE-AAYTTRGGKIPIRWTAPEAIAYRKFTSASDVWSYGIVMWEVMSYGERPYWEM 213 (267)
T ss_pred hcEEECCCCeEEeCCCCcccccccccc-eeeecCCCccceeecCHhHhccCccCchhhhHHHHHHHHHHhcCCCCCcccC
Confidence 366666666778899999988765432 222222 23568999999998999999999999999999887 99998654
Q ss_pred chhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhcC
Q 038019 720 LDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLAGD 787 (866)
Q Consensus 720 ~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~~~ 787 (866)
...+ ...++. ++. .. |.... ....+.+++.+|++.+|++||+|.+|++.|+..
T Consensus 214 ~~~~---~~~~~~----~~~--~~--~~~~~----~~~~~~~li~~~l~~~p~~Rp~~~~i~~~l~~~ 266 (267)
T cd05066 214 SNQD---VIKAIE----EGY--RL--PAPMD----CPAALHQLMLDCWQKDRNERPKFEQIVSILDKL 266 (267)
T ss_pred CHHH---HHHHHh----CCC--cC--CCCCC----CCHHHHHHHHHHcccCchhCCCHHHHHHHHHhh
Confidence 3221 222221 110 00 11111 123456677799999999999999999999753
|
Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; most class EphA receptors including EphA3, EphA4, EphA5, and EphA7, but excluding EphA1, EphA2 and EphA10; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. One exception is EphA4, which also binds ephrins-B2/B3. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellul |
| >cd08224 STKc_Nek6_Nek7 Catalytic domain of the Protein Serine/Threonine Kinases, Never In Mitosis gene A-related kinase 6 and 7 | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.9e-11 Score=129.92 Aligned_cols=130 Identities=17% Similarity=0.181 Sum_probs=88.2
Q ss_pred CcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCCchh
Q 038019 643 PNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSLDM 722 (866)
Q Consensus 643 ~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~~ 722 (866)
.|++...+...++.|||.++.+..... ......++..|+|||+..+..++.++|||||||+++||++|+.|+....
T Consensus 135 ~nil~~~~~~~~l~d~~~~~~~~~~~~--~~~~~~~~~~y~apE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~-- 210 (267)
T cd08224 135 ANVFITATGVVKLGDLGLGRFFSSKTT--AAHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGDK-- 210 (267)
T ss_pred hhEEECCCCcEEEeccceeeeccCCCc--ccceecCCccccCHHHhccCCCCchhcHHHHHHHHHHHHHCCCCcccCC--
Confidence 366666666777889998776643221 1123458889999999998899999999999999999999999985322
Q ss_pred hhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhc
Q 038019 723 EKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLAG 786 (866)
Q Consensus 723 ~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~~ 786 (866)
..+.++... ...+.. .+... ......+.+++.+|++.+|++||++.+|+++|+.
T Consensus 211 --~~~~~~~~~-~~~~~~----~~~~~---~~~~~~~~~~i~~cl~~~p~~Rp~~~~il~~~~~ 264 (267)
T cd08224 211 --MNLYSLCKK-IEKCDY----PPLPA---DHYSEELRDLVSRCINPDPEKRPDISYVLQVAKE 264 (267)
T ss_pred --ccHHHHHhh-hhcCCC----CCCCh---hhcCHHHHHHHHHHcCCCcccCCCHHHHHHHHHH
Confidence 222222211 111111 11111 1122345567779999999999999999999985
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) and Nek7 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6/7 subfamily is part of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 and Nek7 are the shortest Neks, consisting only of the catalytic domain and a very short N-terminal extension. They show distinct expression patterns and both appear to be downstream substrates of Nek9. They are required for mitotic spindle formation and cytokinesis. They may a |
| >cd06640 STKc_MST4 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 4 | Back alignment and domain information |
|---|
Probab=99.18 E-value=2e-11 Score=130.76 Aligned_cols=124 Identities=18% Similarity=0.281 Sum_probs=87.2
Q ss_pred CcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCCchh
Q 038019 643 PNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSLDM 722 (866)
Q Consensus 643 ~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~~ 722 (866)
.|++...+...++.|||.+..+...... .....++..|+|||+..+..++.++|||||||+++||+||+.|+....+.
T Consensus 130 ~Nil~~~~~~~~l~dfg~~~~~~~~~~~--~~~~~~~~~y~apE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~ 207 (277)
T cd06640 130 ANVLLSEQGDVKLADFGVAGQLTDTQIK--RNTFVGTPFWMAPEVIQQSAYDSKADIWSLGITAIELAKGEPPNSDMHPM 207 (277)
T ss_pred hhEEEcCCCCEEEcccccceeccCCccc--cccccCcccccCHhHhccCCCccHHHHHHHHHHHHHHHHCCCCCCCcChH
Confidence 3666666666778999998877654321 22345788999999999889999999999999999999999998754322
Q ss_pred hhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 038019 723 EKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAM 783 (866)
Q Consensus 723 ~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~ 783 (866)
... .. ...+ ..+ .........+.+++..|++.+|++||+|.+|++.
T Consensus 208 ~~~------~~-~~~~-----~~~---~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~il~~ 253 (277)
T cd06640 208 RVL------FL-IPKN-----NPP---TLTGEFSKPFKEFIDACLNKDPSFRPTAKELLKH 253 (277)
T ss_pred hHh------hh-hhcC-----CCC---CCchhhhHHHHHHHHHHcccCcccCcCHHHHHhC
Confidence 111 00 0111 011 1222334556678889999999999999999764
|
Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 4 (MST4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST4 is sometimes referred to as MASK (MST3 and SOK1-related kinase). It plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. It influences cell growth and transformation by modulating the extracellular signal-regulated kinase (ERK) pathway. MST4 may also play a role in tumor formation and progression. It localizes in the Golgi apparatus by inter |
| >cd05607 STKc_GRK7 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 7 | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.1e-11 Score=132.90 Aligned_cols=129 Identities=18% Similarity=0.176 Sum_probs=86.2
Q ss_pred CcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCCchh
Q 038019 643 PNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSLDM 722 (866)
Q Consensus 643 ~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~~ 722 (866)
.|++...+...++.|||.+..+..+. .+....||.+|+|||+...+.++.++|||||||+++||++|+.|+......
T Consensus 124 ~Nili~~~~~~~l~Dfg~~~~~~~~~---~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslGv~l~el~~g~~p~~~~~~~ 200 (277)
T cd05607 124 ENVLLDDQGNCRLSDLGLAVELKDGK---TITQRAGTNGYMAPEILKEEPYSYPVDWFAMGCSIYEMVAGRTPFKDHKEK 200 (277)
T ss_pred HhEEEcCCCCEEEeeceeeeecCCCc---eeeccCCCCCccCHHHHccCCCCCchhHHHHHHHHHHHHhCCCCCCCCcch
Confidence 36666666667789999988776542 344557899999999999889999999999999999999999998643211
Q ss_pred hhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHh
Q 038019 723 EKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLA 785 (866)
Q Consensus 723 ~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~ 785 (866)
. ...+....... +. +......+ ...+.+++..|++.+|++||+++|+++.+.
T Consensus 201 ~--~~~~~~~~~~~-~~----~~~~~~~~----~~~~~~li~~~L~~~P~~R~~~~~~~~~~~ 252 (277)
T cd05607 201 V--AKEELKRRTLE-DE----VKFEHQNF----TEESKDICRLFLAKKPEDRLGSREKNDDPR 252 (277)
T ss_pred h--hHHHHHHHhhc-cc----cccccccC----CHHHHHHHHHHhccCHhhCCCCccchhhhh
Confidence 1 11111111111 10 10000111 123455666999999999999988764443
|
Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK7 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK7, also called iodopsin kinase, belongs to the visual gr |
| >cd08217 STKc_Nek2 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 2 | Back alignment and domain information |
|---|
Probab=99.18 E-value=1e-11 Score=131.53 Aligned_cols=124 Identities=19% Similarity=0.209 Sum_probs=88.4
Q ss_pred CcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCCchh
Q 038019 643 PNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSLDM 722 (866)
Q Consensus 643 ~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~~ 722 (866)
.|++...+...++.|||.+..+..... ......|+..|+|||++....++.++||||||++++||++|+.|+......
T Consensus 139 ~nili~~~~~~kl~d~g~~~~~~~~~~--~~~~~~~~~~~~~pE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~ 216 (265)
T cd08217 139 ANIFLDANNNVKLGDFGLAKILGHDSS--FAKTYVGTPYYMSPEQLNHMSYDEKSDIWSLGCLIYELCALSPPFTARNQL 216 (265)
T ss_pred HHEEEecCCCEEEecccccccccCCcc--cccccccCCCccChhhhcCCCCCchhHHHHHHHHHHHHHHCCCcccCcCHH
Confidence 366666667778899999988875432 123346889999999999999999999999999999999999998754311
Q ss_pred hhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 038019 723 EKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAM 783 (866)
Q Consensus 723 ~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~ 783 (866)
.+.+.+ ..+.. +.+ +......+.+++..|++.+|++||+|.+|++.
T Consensus 217 ---~~~~~~----~~~~~-----~~~---~~~~~~~~~~l~~~~l~~~p~~Rp~~~~il~~ 262 (265)
T cd08217 217 ---QLASKI----KEGKF-----RRI---PYRYSSELNEVIKSMLNVDPDKRPSTEELLQL 262 (265)
T ss_pred ---HHHHHH----hcCCC-----CCC---ccccCHHHHHHHHHHccCCcccCCCHHHHhhC
Confidence 122221 11111 111 11223456677779999999999999999863
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek2 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek2 subfamily includes Aspergillus nidulans NIMA kinase, the founding member of the Nek family, which was identified in a screen for cell cycle mutants prevented from entering mitosis. NIMA is essential for mitotic entry and progression through mitosis, and its degradation is essential for mitotic exi |
| >cd08223 STKc_Nek4 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 4 | Back alignment and domain information |
|---|
Probab=99.18 E-value=8.8e-12 Score=131.67 Aligned_cols=124 Identities=13% Similarity=0.159 Sum_probs=84.7
Q ss_pred CCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCCch
Q 038019 642 KPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSLD 721 (866)
Q Consensus 642 ~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~ 721 (866)
..|++...+...++.|||.++.+.... .......|+..|+|||+..++.++.++||||||++++|+++|+.|++....
T Consensus 130 p~nil~~~~~~~~l~df~~~~~~~~~~--~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~~l~~g~~~~~~~~~ 207 (257)
T cd08223 130 TQNVFLTRTNIIKVGDLGIARVLENQC--DMASTLIGTPYYMSPELFSNKPYNYKSDVWALGCCVYEMATLKHAFNAKDM 207 (257)
T ss_pred chhEEEecCCcEEEecccceEEecccC--CccccccCCcCccChhHhcCCCCCchhhhHHHHHHHHHHHcCCCCCCCCCH
Confidence 346666666667788999887664211 112234578899999999999999999999999999999999999874322
Q ss_pred hhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 722 MEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 722 ~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
..+..... .+.. +.+ +......+.+++.+|++.+|++||+|.++++
T Consensus 208 ------~~~~~~~~-~~~~-----~~~---~~~~~~~~~~li~~~l~~~p~~Rp~~~~~l~ 253 (257)
T cd08223 208 ------NSLVYRII-EGKL-----PPM---PKDYSPELGELIATMLSKRPEKRPSVKSILR 253 (257)
T ss_pred ------HHHHHHHH-hcCC-----CCC---ccccCHHHHHHHHHHhccCcccCCCHHHHhc
Confidence 12222211 1211 111 1112234556777999999999999999975
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 4 (Nek4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek4 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Nek4 is highly abundant in the testis. Its specific function is unknown. |
| >cd06651 STKc_MEKK3 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 3 | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.1e-11 Score=131.94 Aligned_cols=124 Identities=19% Similarity=0.225 Sum_probs=80.5
Q ss_pred cccCHHHHHHHhcCCccccccCCC-CceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCCchh
Q 038019 644 NIFGYAELRSATKDFNRSNKLGEG-GYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSLDM 722 (866)
Q Consensus 644 ~~~~~~~~~~~~~dF~~~~~lg~g-~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~~ 722 (866)
|++...+...++.|||.++.+... .....+....++.+|+|||++.+..++.++|||||||+++||+||+.|+......
T Consensus 136 nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~i~~el~~g~~pf~~~~~~ 215 (266)
T cd06651 136 NILRDSAGNVKLGDFGASKRLQTICMSGTGIRSVTGTPYWMSPEVISGEGYGRKADVWSLGCTVVEMLTEKPPWAEYEAM 215 (266)
T ss_pred HEEECCCCCEEEccCCCccccccccccCCccccCCccccccCHHHhCCCCCCchhhhHHHHHHHHHHHHCCCCccccchH
Confidence 555555556778899988765421 1112233456889999999999889999999999999999999999998743211
Q ss_pred hhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 723 EKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 723 ~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
+.+..... ...+|.+... +.+.++..+.|+..+|++||+|+||++
T Consensus 216 ------~~~~~~~~-----~~~~~~~~~~----~~~~~~~li~~~~~~p~~Rp~~~eil~ 260 (266)
T cd06651 216 ------AAIFKIAT-----QPTNPQLPSH----ISEHARDFLGCIFVEARHRPSAEELLR 260 (266)
T ss_pred ------HHHHHHhc-----CCCCCCCchh----cCHHHHHHHHHhcCChhhCcCHHHHhc
Confidence 11111111 1112222211 112223233688899999999999964
|
Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK3 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development |
| >cd05619 STKc_nPKC_theta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C theta | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.9e-11 Score=133.63 Aligned_cols=120 Identities=18% Similarity=0.220 Sum_probs=81.7
Q ss_pred CcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCCchh
Q 038019 643 PNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSLDM 722 (866)
Q Consensus 643 ~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~~ 722 (866)
.|++...+...++.|||.++....+. .......||..|+|||++.+..++.++|||||||+++||++|+.|+......
T Consensus 125 ~Nil~~~~~~~kl~Dfg~~~~~~~~~--~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~el~~G~~pf~~~~~~ 202 (316)
T cd05619 125 DNILLDTDGHIKIADFGMCKENMLGD--AKTCTFCGTPDYIAPEILLGQKYNTSVDWWSFGVLLYEMLIGQSPFHGHDEE 202 (316)
T ss_pred HHEEECCCCCEEEccCCcceECCCCC--CceeeecCCccccCHHHHcCCCCCchhhhhhHHHHHHHHHhCCCCCCCCCHH
Confidence 36666666667889999876543222 1234457999999999999889999999999999999999999998754322
Q ss_pred hhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHH-HH
Q 038019 723 EKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMS-RV 780 (866)
Q Consensus 723 ~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~-~V 780 (866)
.+.+.+. .+ .+........+ +.++...|++.+|++||++. ++
T Consensus 203 ---~~~~~i~----~~------~~~~~~~~~~~---~~~li~~~l~~~P~~R~~~~~~l 245 (316)
T cd05619 203 ---ELFQSIR----MD------NPCYPRWLTRE---AKDILVKLFVREPERRLGVKGDI 245 (316)
T ss_pred ---HHHHHHH----hC------CCCCCccCCHH---HHHHHHHHhccCHhhcCCChHHH
Confidence 1222211 11 11121112223 34556699999999999997 44
|
Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in |
| >cd05073 PTKc_Hck Catalytic domain of the Protein Tyrosine Kinase, Hematopoietic cell kinase | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.3e-11 Score=130.84 Aligned_cols=129 Identities=22% Similarity=0.323 Sum_probs=90.2
Q ss_pred CCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHh-cCCCCCCCc
Q 038019 642 KPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIIS-GRASSDKSL 720 (866)
Q Consensus 642 ~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~t-g~~p~~~~~ 720 (866)
..|++...+...++.||+.+..+..+.. ....+..++..|+|||++..+.++.++|||||||+++|++| |+.|+....
T Consensus 130 p~ni~i~~~~~~~l~d~~~~~~~~~~~~-~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~~l~t~g~~p~~~~~ 208 (260)
T cd05073 130 AANILVSASLVCKIADFGLARVIEDNEY-TAREGAKFPIKWTAPEAINFGSFTIKSDVWSFGILLMEIVTYGRIPYPGMS 208 (260)
T ss_pred cceEEEcCCCcEEECCCcceeeccCCCc-ccccCCcccccccCHhHhccCCcCccccchHHHHHHHHHHhcCCCCCCCCC
Confidence 3466666677788899998887765543 22233446678999999998999999999999999999999 888886433
Q ss_pred hhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhc
Q 038019 721 DMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLAG 786 (866)
Q Consensus 721 ~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~~ 786 (866)
.. .+..+.. .+... +... .....+.++..+|++.+|++||++.++.++|+.
T Consensus 209 ~~---~~~~~~~----~~~~~----~~~~----~~~~~~~~~i~~~l~~~p~~Rp~~~~l~~~L~~ 259 (260)
T cd05073 209 NP---EVIRALE----RGYRM----PRPE----NCPEELYNIMMRCWKNRPEERPTFEYIQSVLDD 259 (260)
T ss_pred HH---HHHHHHh----CCCCC----CCcc----cCCHHHHHHHHHHcccCcccCcCHHHHHHHHhc
Confidence 21 1222221 11111 1111 112345667779999999999999999999974
|
Protein Tyrosine Kinase (PTK) family; Hematopoietic cell kinase (Hck); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Hck is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pa |
| >PTZ00036 glycogen synthase kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=2e-11 Score=139.42 Aligned_cols=134 Identities=19% Similarity=0.184 Sum_probs=83.6
Q ss_pred CcccCHHH-HHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeec-CCCCchhHHHHHHHHHHHHHhcCCCCCCCc
Q 038019 643 PNIFGYAE-LRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMR-GHLTEKADVFSFGVVALEIISGRASSDKSL 720 (866)
Q Consensus 643 ~~~~~~~~-~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~-~~~t~ksDVySfGvvLlEl~tg~~p~~~~~ 720 (866)
.|++...+ ...++.|||.++.+..+... ....||..|||||++.+ ..++.++|||||||+++||+||+.|+....
T Consensus 199 ~NILl~~~~~~vkL~DFGla~~~~~~~~~---~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlGvil~elltG~~pf~~~~ 275 (440)
T PTZ00036 199 QNLLIDPNTHTLKLCDFGSAKNLLAGQRS---VSYICSRFYRAPELMLGATNYTTHIDLWSLGCIIAEMILGYPIFSGQS 275 (440)
T ss_pred HHEEEcCCCCceeeeccccchhccCCCCc---ccCCCCcCccCHHHhcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCC
Confidence 35655433 35678999999877544322 23467899999998765 479999999999999999999999997544
Q ss_pred hhhhhcHHHHHHHHhhc----------CCcccccCCc-----cc-ccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 721 DMEKIYLLEWAWNLHEN----------NQSFGLVDPT-----LT-EFNDKEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 721 ~~~~~~l~~~~~~~~~~----------~~~~~~~d~~-----l~-~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
..+. +.. ....... ....++--|. +. .++......+.++...|++.+|.+|||+.|+++
T Consensus 276 ~~~~--~~~-i~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~li~~~L~~dP~~R~ta~e~l~ 350 (440)
T PTZ00036 276 SVDQ--LVR-IIQVLGTPTEDQLKEMNPNYADIKFPDVKPKDLKKVFPKGTPDDAINFISQFLKYEPLKRLNPIEALA 350 (440)
T ss_pred hHHH--HHH-HHHHhCCCCHHHHHHhchhhhcccCCccCchhHHHHhccCCCHHHHHHHHHHCCCChhHCcCHHHHhC
Confidence 3221 111 1111000 0000000011 10 011111234566777999999999999999874
|
|
| >cd05617 STKc_aPKC_zeta Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C zeta | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.1e-11 Score=136.12 Aligned_cols=125 Identities=16% Similarity=0.187 Sum_probs=82.9
Q ss_pred CcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCCchh
Q 038019 643 PNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSLDM 722 (866)
Q Consensus 643 ~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~~ 722 (866)
.|++...+...++.|||.++.....+ .......||..|+|||++.+..++.++|||||||+++||+||+.|++.....
T Consensus 125 ~Nili~~~~~~kl~Dfg~~~~~~~~~--~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~ell~g~~pf~~~~~~ 202 (327)
T cd05617 125 DNVLLDADGHIKLTDYGMCKEGLGPG--DTTSTFCGTPNYIAPEILRGEEYGFSVDWWALGVLMFEMMAGRSPFDIITDN 202 (327)
T ss_pred HHEEEeCCCCEEEeccccceeccCCC--CceecccCCcccCCHHHHCCCCCCchheeehhHHHHHHHHhCCCCCCccCCC
Confidence 36666666677889999887532211 2223456899999999999999999999999999999999999999643322
Q ss_pred hhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHH
Q 038019 723 EKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMS 778 (866)
Q Consensus 723 ~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~ 778 (866)
......++.......... .+..... ..+.++...|++.||++||++.
T Consensus 203 ~~~~~~~~~~~~~~~~~~------~~p~~~~---~~~~~li~~~L~~dP~~R~~~~ 249 (327)
T cd05617 203 PDMNTEDYLFQVILEKPI------RIPRFLS---VKASHVLKGFLNKDPKERLGCQ 249 (327)
T ss_pred cccccHHHHHHHHHhCCC------CCCCCCC---HHHHHHHHHHhccCHHHcCCCC
Confidence 222233344333322111 1111111 2344566689999999999853
|
Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, zeta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-zeta plays a critical role in activating the glucose transport response. It is activated by glucose, insulin, and exercise through diverse pathways |
| >cd06620 PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr1-like dual-specificity MAP kinase kinases | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.3e-11 Score=132.74 Aligned_cols=130 Identities=22% Similarity=0.252 Sum_probs=86.9
Q ss_pred cccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCCchh-
Q 038019 644 NIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSLDM- 722 (866)
Q Consensus 644 ~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~~- 722 (866)
|++...+...++.|||.+..+..+. .....|+..|+|||++.++.++.++|||||||+++|++||+.|++.....
T Consensus 134 nil~~~~~~~~l~d~gl~~~~~~~~----~~~~~~~~~~~aPE~~~~~~~~~~~Di~slG~~l~~l~tg~~p~~~~~~~~ 209 (284)
T cd06620 134 NILVNSRGQIKLCDFGVSGELINSI----ADTFVGTSTYMSPERIQGGKYTVKSDVWSLGISIIELALGKFPFAFSNIDD 209 (284)
T ss_pred HEEECCCCcEEEccCCcccchhhhc----cCccccCcccCCHHHHccCCCCccchHHHHHHHHHHHHhCCCCCcccchhh
Confidence 5555555567788998876553221 11236889999999998889999999999999999999999999754431
Q ss_pred ----hhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHh
Q 038019 723 ----EKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLA 785 (866)
Q Consensus 723 ----~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~ 785 (866)
....+.++........ .+.+.. .+....+.+++.+|++.+|++||+|.||+++..
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~------~~~~~~--~~~~~~~~~li~~~l~~dp~~Rpt~~e~~~~~~ 268 (284)
T cd06620 210 DGQDDPMGILDLLQQIVQEP------PPRLPS--SDFPEDLRDFVDACLLKDPTERPTPQQLCAMPP 268 (284)
T ss_pred hhhhhhhHHHHHHHHHhhcc------CCCCCc--hhcCHHHHHHHHHHhcCCcccCcCHHHHhcCcc
Confidence 1112233333322111 111111 112234566777999999999999999998653
|
Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal Byr1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include |
| >cd05571 STKc_PKB Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.2e-11 Score=135.74 Aligned_cols=123 Identities=18% Similarity=0.182 Sum_probs=83.4
Q ss_pred CCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCCch
Q 038019 642 KPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSLD 721 (866)
Q Consensus 642 ~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~ 721 (866)
..|++...+...++.|||.++..... +.......||+.|||||.+....++.++|||||||+++||+||+.|+.....
T Consensus 123 p~NIll~~~~~~kl~DfG~a~~~~~~--~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~Pf~~~~~ 200 (323)
T cd05571 123 LENLMLDKDGHIKITDFGLCKEGISD--GATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDH 200 (323)
T ss_pred HHHEEECCCCCEEEeeCCCCcccccC--CCcccceecCccccChhhhcCCCCCccccCcccchhhhhhhcCCCCCCCCCH
Confidence 34677666667788999988753221 2223445799999999999999999999999999999999999999875332
Q ss_pred hhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCC-----CHHHHHH
Q 038019 722 MEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRP-----PMSRVVA 782 (866)
Q Consensus 722 ~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RP-----sm~~V~~ 782 (866)
.. +...+. .+ +..+......+ +.++...|++.||++|| +..++++
T Consensus 201 ~~---~~~~~~----~~------~~~~p~~~~~~---~~~li~~~L~~dP~~R~~~~~~~~~~ll~ 250 (323)
T cd05571 201 EK---LFELIL----ME------EIRFPRTLSPE---AKSLLAGLLKKDPKQRLGGGPEDAKEIME 250 (323)
T ss_pred HH---HHHHHH----cC------CCCCCCCCCHH---HHHHHHHHccCCHHHcCCCCCCCHHHHHc
Confidence 11 111111 11 11111111223 44555699999999999 6877764
|
Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. It is activated downstream of PI3K and plays important roles in diverse cellular functions including cell survival, growth, proliferation, angiogenesis, motility, and migration. PKB also has a central role in a variety of human cancers, having be |
| >cd05083 PTKc_Chk Catalytic domain of the Protein Tyrosine Kinase, Csk homologous kinase | Back alignment and domain information |
|---|
Probab=99.16 E-value=9.3e-12 Score=131.37 Aligned_cols=124 Identities=25% Similarity=0.313 Sum_probs=85.4
Q ss_pred CcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHh-cCCCCCCCch
Q 038019 643 PNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIIS-GRASSDKSLD 721 (866)
Q Consensus 643 ~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~t-g~~p~~~~~~ 721 (866)
.|++...+...++.|||.++....+ +.....+..|+|||+...+.++.++|||||||+++||++ |+.|+.....
T Consensus 129 ~nili~~~~~~kl~Dfg~~~~~~~~-----~~~~~~~~~y~~pe~~~~~~~~~~~Dv~slG~~l~el~~~g~~p~~~~~~ 203 (254)
T cd05083 129 RNILVSEDGVAKVSDFGLARVGSMG-----VDNSKLPVKWTAPEALKHKKFSSKSDVWSYGVLLWEVFSYGRAPYPKMSL 203 (254)
T ss_pred ceEEEcCCCcEEECCCccceecccc-----CCCCCCCceecCHHHhccCCcCchhhHHHHHHHHHHHHhCCCCCCccCCH
Confidence 3666665666788999988765432 122334578999999998999999999999999999998 9998865432
Q ss_pred hhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhc
Q 038019 722 MEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLAG 786 (866)
Q Consensus 722 ~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~~ 786 (866)
.+ +.+ ....+.. .++ .......+.+++.+|++.+|++||+|.+|++.|+.
T Consensus 204 ~~---~~~----~~~~~~~---~~~-----~~~~~~~~~~li~~~l~~~p~~Rp~~~~l~~~l~~ 253 (254)
T cd05083 204 KE---VKE----CVEKGYR---MEP-----PEGCPADVYVLMTSCWETEPKKRPSFHKLREKLEK 253 (254)
T ss_pred HH---HHH----HHhCCCC---CCC-----CCcCCHHHHHHHHHHcCCChhhCcCHHHHHHHHcc
Confidence 21 111 1111111 111 11112345567779999999999999999999874
|
Protein Tyrosine Kinase (PTK) family; Csk homologous kinase (Chk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. Chk is also referred to as megakaryocyte-associated tyrosine kinase (Matk). To inhibit Src kinases, Chk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Chk inhibit Src ki |
| >cd07871 STKc_PCTAIRE3 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-3 kinase | Back alignment and domain information |
|---|
Probab=99.16 E-value=2e-11 Score=131.48 Aligned_cols=138 Identities=12% Similarity=0.082 Sum_probs=84.7
Q ss_pred CcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeec-CCCCchhHHHHHHHHHHHHHhcCCCCCCCch
Q 038019 643 PNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMR-GHLTEKADVFSFGVVALEIISGRASSDKSLD 721 (866)
Q Consensus 643 ~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~-~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~ 721 (866)
.|++..++...++.|||.++...... ..+....||..|+|||++.+ ..++.++||||+||+++||+||+.|+.....
T Consensus 132 ~Nil~~~~~~~kl~DfG~~~~~~~~~--~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~~l~~l~~g~~pf~~~~~ 209 (288)
T cd07871 132 QNLLINEKGELKLADFGLARAKSVPT--KTYSNEVVTLWYRPPDVLLGSTEYSTPIDMWGVGCILYEMATGRPMFPGSTV 209 (288)
T ss_pred HHEEECCCCCEEECcCcceeeccCCC--ccccCceecccccChHHhcCCcccCcHHHHHHHHHHHHHHHhCCCCCCCCCH
Confidence 36666666678899999887654322 12234467899999998765 5689999999999999999999999875443
Q ss_pred hhhhcHHHHHHH-----Hhhc----CCcccccCCcccccC-----HHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 722 MEKIYLLEWAWN-----LHEN----NQSFGLVDPTLTEFN-----DKEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 722 ~~~~~l~~~~~~-----~~~~----~~~~~~~d~~l~~~~-----~~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
.+.......... .+.. ....+...|...... ........++...|++.||.+|||++|+++
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~mL~~dp~~R~t~~~~l~ 284 (288)
T cd07871 210 KEELHLIFRLLGTPTEETWPGITSNEEFRSYLFPQYRAQPLINHAPRLDTDGIDLLSSLLLYETKSRISAEAALR 284 (288)
T ss_pred HHHHHHHHHHhCCCChHHhhccccchhhhccccCccCCCchHHhCCCCCHHHHHHHHHhcCcCcccCCCHHHHhc
Confidence 322211111100 0000 000011111110000 001123456677999999999999999874
|
Serine/Threonine Kinases (STKs), PCTAIRE-3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-3 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-3 shows a restricted pattern of expression and is present in brain, kidney, and intestine. It is elevated in Alzheimer's disease (AD) and has been shown to associate with paired helical filament |
| >cd05585 STKc_YPK1_like Catalytic domain of Yeast Protein Kinase 1-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.1e-11 Score=135.13 Aligned_cols=125 Identities=16% Similarity=0.117 Sum_probs=83.7
Q ss_pred CcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCCchh
Q 038019 643 PNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSLDM 722 (866)
Q Consensus 643 ~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~~ 722 (866)
.|++...+...++.|||.++...... .......||.+|+|||++.+..++.++|||||||+++||+||+.|+......
T Consensus 122 ~Nili~~~~~~kl~Dfg~~~~~~~~~--~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslGvil~el~tg~~pf~~~~~~ 199 (312)
T cd05585 122 ENILLDYQGHIALCDFGLCKLNMKDD--DKTNTFCGTPEYLAPELLLGHGYTKAVDWWTLGVLLYEMLTGLPPFYDENVN 199 (312)
T ss_pred HHeEECCCCcEEEEECcccccCccCC--CccccccCCcccCCHHHHcCCCCCCccceechhHHHHHHHhCCCCcCCCCHH
Confidence 36666666677899999887643322 1223456899999999999999999999999999999999999998743221
Q ss_pred hhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHh
Q 038019 723 EKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLA 785 (866)
Q Consensus 723 ~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~ 785 (866)
+....... +. ..+...... .+.++...|++.+|++||+...+.+.|.
T Consensus 200 ------~~~~~~~~-~~------~~~~~~~~~---~~~~li~~~L~~dp~~R~~~~~~~e~l~ 246 (312)
T cd05585 200 ------EMYRKILQ-EP------LRFPDGFDR---DAKDLLIGLLSRDPTRRLGYNGAQEIKN 246 (312)
T ss_pred ------HHHHHHHc-CC------CCCCCcCCH---HHHHHHHHHcCCCHHHcCCCCCHHHHHc
Confidence 11222111 10 111111122 3345566999999999987655555554
|
Serine/Threonine Kinases (STKs), Yeast protein kinase 1 (YPK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YPK1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the AGC STKs, Saccharomyces cerevisiae YPK1 and Schizosaccharomyces pombe Gad8p. YPK1 is required for cell growth and acts as a downstream kinase in the sphingolipid-mediated signaling pathway of yeast. It also plays a role in efficient endocytosis and in the maintenance of cell wall integrity. Gad8p is a downstream target of Tor1p, the fission yeast homolog of mTOR. It pl |
| >PTZ00266 NIMA-related protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.7e-11 Score=146.79 Aligned_cols=112 Identities=16% Similarity=0.237 Sum_probs=77.2
Q ss_pred HHhcCCccccccCCCCceeEEEeecCCCCccCceeeec--CCCCchhHHHHHHHHHHHHHhcCCCCCCCchhhhhcHHHH
Q 038019 653 SATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMR--GHLTEKADVFSFGVVALEIISGRASSDKSLDMEKIYLLEW 730 (866)
Q Consensus 653 ~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~--~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~~~~~~l~~~ 730 (866)
.++.|||+++.++.... .....||+.|+|||++.. ..++.++||||||||||||+||+.||....... ..
T Consensus 181 VKLsDFGlAr~l~~~s~---~~s~vGTp~YmAPEvL~ge~~~~s~KSDVWSLG~ILYELLTGk~PF~~~~~~~-----ql 252 (1021)
T PTZ00266 181 AKIGDFGLSKNIGIESM---AHSCVGTPYYWSPELLLHETKSYDDKSDMWALGCIIYELCSGKTPFHKANNFS-----QL 252 (1021)
T ss_pred eEEccCCcccccccccc---ccccCCCccccCHHHHhccCCCCCchhHHHHHHHHHHHHHHCCCCCCcCCcHH-----HH
Confidence 57889999988765432 334578999999998853 568999999999999999999999997433211 11
Q ss_pred HHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 731 AWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 731 ~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
+ ..+..+. +..+... ...+.+++..|++.+|++||++.|++.
T Consensus 253 i-~~lk~~p-----~lpi~~~----S~eL~dLI~~~L~~dPeeRPSa~QlL~ 294 (1021)
T PTZ00266 253 I-SELKRGP-----DLPIKGK----SKELNILIKNLLNLSAKERPSALQCLG 294 (1021)
T ss_pred H-HHHhcCC-----CCCcCCC----CHHHHHHHHHHhcCChhHCcCHHHHhc
Confidence 1 1111110 1111111 123455667999999999999999883
|
|
| >cd07867 STKc_CDC2L6 Catalytic domain of Serine/Threonine Kinase, Cell Division Cycle 2-like 6 | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.1e-11 Score=133.23 Aligned_cols=69 Identities=16% Similarity=0.207 Sum_probs=53.8
Q ss_pred HHHHHhcCCccccccCCCCce-eEEEeecCCCCccCceeeec-CCCCchhHHHHHHHHHHHHHhcCCCCCC
Q 038019 650 ELRSATKDFNRSNKLGEGGYG-PVYKVTANSYGYLAPEYAMR-GHLTEKADVFSFGVVALEIISGRASSDK 718 (866)
Q Consensus 650 ~~~~~~~dF~~~~~lg~g~~g-~vy~~~~gt~gY~aPE~~~~-~~~t~ksDVySfGvvLlEl~tg~~p~~~ 718 (866)
....++.|||.++.++..... ....+..||.+|+|||++.+ ..++.++|||||||+++||+||+.|+..
T Consensus 148 ~~~~kl~DfG~a~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlG~il~el~tg~~~f~~ 218 (317)
T cd07867 148 RGRVKIADMGFARLFNSPLKPLADLDPVVVTFWYRAPELLLGARHYTKAIDIWAIGCIFAELLTSEPIFHC 218 (317)
T ss_pred CCcEEEeeccceeccCCCcccccccCcceecccccCcHHhcCCCccCcHHHHHhHHHHHHHHHhCCCCccc
Confidence 345678999999887654321 11234468999999998876 4589999999999999999999999864
|
Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 6 (CDC2L6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L6 is also called CDK8-like and was previously referred to as CDK11. However, this is a confusing nomenclature as CDC2L6 is distinct from CDC2L1, which is represented by the two protein products from its gene, called CDK11(p110) and CDK11(p58), as well as |
| >cd05608 STKc_GRK1 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 1 | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.6e-11 Score=131.61 Aligned_cols=125 Identities=18% Similarity=0.172 Sum_probs=82.8
Q ss_pred cccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCCchhh
Q 038019 644 NIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSLDME 723 (866)
Q Consensus 644 ~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~~~ 723 (866)
|++...+...++.|||.+..+..+.. ...+..||..|+|||++.++.++.++|||||||+++||+||+.|+.......
T Consensus 127 Nili~~~~~~~l~dfg~~~~~~~~~~--~~~~~~g~~~y~aPE~~~~~~~~~~~DvwslG~il~el~~g~~pf~~~~~~~ 204 (280)
T cd05608 127 NVLLDNDGNVRISDLGLAVELKDGQS--KTKGYAGTPGFMAPELLQGEEYDFSVDYFALGVTLYEMIAARGPFRARGEKV 204 (280)
T ss_pred HEEECCCCCEEEeeCccceecCCCCc--cccccCCCcCccCHHHhcCCCCCccccHHHHHHHHHHHHhCCCCCCCCCcch
Confidence 56655555677899999887765532 2334578999999999999999999999999999999999999987532211
Q ss_pred hhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCC-----CHHHHHH
Q 038019 724 KIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRP-----PMSRVVA 782 (866)
Q Consensus 724 ~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RP-----sm~~V~~ 782 (866)
...+..... ..... ..+......+.++...|++.+|++|| ++.++.+
T Consensus 205 --~~~~~~~~~---------~~~~~-~~~~~~~~~~~~li~~~l~~~P~~R~~~~~~~~~~~l~ 256 (280)
T cd05608 205 --ENKELKQRI---------LNDSV-TYPDKFSPASKSFCEALLAKDPEKRLGFRDGNCDGLRT 256 (280)
T ss_pred --hHHHHHHhh---------cccCC-CCcccCCHHHHHHHHHHhcCCHHHhcCCCCCCHHHHhc
Confidence 011111111 11111 11111223455566799999999999 5555553
|
Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK1, also called rhodopsin kinase, belongs to the visual g |
| >cd05618 STKc_aPKC_iota Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C iota | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.1e-11 Score=136.31 Aligned_cols=123 Identities=15% Similarity=0.172 Sum_probs=81.4
Q ss_pred CcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCCchh
Q 038019 643 PNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSLDM 722 (866)
Q Consensus 643 ~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~~ 722 (866)
.|++...+...++.|||.++..-..+ .......||..|+|||++.+..++.++|||||||+++||+||+.|++.....
T Consensus 125 ~Nili~~~~~~kL~DfG~~~~~~~~~--~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~Pf~~~~~~ 202 (329)
T cd05618 125 DNVLLDSEGHIKLTDYGMCKEGLRPG--DTTSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGSS 202 (329)
T ss_pred HHEEECCCCCEEEeeCCccccccCCC--CccccccCCccccCHHHHcCCCCCCccceecccHHHHHHhhCCCCCccCCCc
Confidence 36666666678899999886532111 1122346899999999999999999999999999999999999998632211
Q ss_pred --hhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCC
Q 038019 723 --EKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPP 776 (866)
Q Consensus 723 --~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPs 776 (866)
.......|+......+.. .+.. .....+.++..+|++.||++||+
T Consensus 203 ~~~~~~~~~~~~~~i~~~~~------~~p~---~~~~~~~~ll~~~L~~dP~~R~~ 249 (329)
T cd05618 203 DNPDQNTEDYLFQVILEKQI------RIPR---SLSVKAASVLKSFLNKDPKERLG 249 (329)
T ss_pred CCcccccHHHHHHHHhcCCC------CCCC---CCCHHHHHHHHHHhcCCHHHcCC
Confidence 111223344443322211 1111 11233455667999999999998
|
Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, iota isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-iota is directly implicated in carcinogenesis. It is critical to oncogenic signaling mediated by Ras and Bcr-Abl. The PKC-iota gene is the target o |
| >KOG0583 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.16 E-value=3.5e-11 Score=132.53 Aligned_cols=120 Identities=23% Similarity=0.235 Sum_probs=86.7
Q ss_pred cccCHHH-HHHHhcCCcccccc-CCCCceeEEEeecCCCCccCceeeecCC-CC-chhHHHHHHHHHHHHHhcCCCCCCC
Q 038019 644 NIFGYAE-LRSATKDFNRSNKL-GEGGYGPVYKVTANSYGYLAPEYAMRGH-LT-EKADVFSFGVVALEIISGRASSDKS 719 (866)
Q Consensus 644 ~~~~~~~-~~~~~~dF~~~~~l-g~g~~g~vy~~~~gt~gY~aPE~~~~~~-~t-~ksDVySfGvvLlEl~tg~~p~~~~ 719 (866)
|++.+.+ ...++.|||.++.. +.+++ .+...||+.|+|||++.+.. |+ .++||||+||+|+-|++|+.||+..
T Consensus 150 Nilld~~~~~~Kl~DFG~s~~~~~~~~~---l~t~cGsp~Y~aPEvl~~~~~Y~g~~aDvWS~GViLy~ml~G~~PF~d~ 226 (370)
T KOG0583|consen 150 NILLDGNEGNLKLSDFGLSAISPGEDGL---LKTFCGSPAYAAPEVLSGKGTYSGKAADVWSLGVILYVLLCGRLPFDDS 226 (370)
T ss_pred HEEecCCCCCEEEeccccccccCCCCCc---ccCCCCCcccCCHHHhCCCCCcCCchhhhhhhHHHHHHHHhCCCCCCCc
Confidence 6666666 78899999999998 55544 55668999999999999866 76 8999999999999999999999863
Q ss_pred chhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHH
Q 038019 720 LDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVV 781 (866)
Q Consensus 720 ~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~ 781 (866)
... .+. +. +..+.. .++.+.. ...+..+..+|++.+|.+|+++.+|+
T Consensus 227 ~~~---~l~---~k-i~~~~~------~~p~~~~--S~~~~~Li~~mL~~~P~~R~t~~~i~ 273 (370)
T KOG0583|consen 227 NVP---NLY---RK-IRKGEF------KIPSYLL--SPEARSLIEKMLVPDPSTRITLLEIL 273 (370)
T ss_pred cHH---HHH---HH-HhcCCc------cCCCCcC--CHHHHHHHHHHcCCCcccCCCHHHHh
Confidence 221 111 11 222211 1111110 23445556689999999999999998
|
|
| >cd06650 PKc_MEK1 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 1 | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.3e-11 Score=133.93 Aligned_cols=73 Identities=22% Similarity=0.319 Sum_probs=58.8
Q ss_pred CcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCC
Q 038019 643 PNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKS 719 (866)
Q Consensus 643 ~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~ 719 (866)
.|++...+...++.|||.+..+... ......||..|+|||+..+..++.++|||||||+++||++|+.|+...
T Consensus 133 ~Nili~~~~~~kL~Dfg~~~~~~~~----~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~il~~l~~g~~p~~~~ 205 (333)
T cd06650 133 SNILVNSRGEIKLCDFGVSGQLIDS----MANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAIGRYPIPPP 205 (333)
T ss_pred hhEEEcCCCCEEEeeCCcchhhhhh----ccccCCCCccccCHHHhcCCCCCcHHHHHHHHHHHHHHHHCCCCCCCc
Confidence 3666666666788999988766432 123346899999999999889999999999999999999999998753
|
Protein kinases (PKs), MAP/ERK kinase (MEK) 1 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 is a dual-specificity PK that phosphorylates and activates the downst |
| >cd05088 PTKc_Tie2 Catalytic domain of the Protein Tyrosine Kinase, Tie2 | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.8e-11 Score=132.95 Aligned_cols=129 Identities=20% Similarity=0.157 Sum_probs=85.5
Q ss_pred CCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHh-cCCCCCCCc
Q 038019 642 KPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIIS-GRASSDKSL 720 (866)
Q Consensus 642 ~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~t-g~~p~~~~~ 720 (866)
..|++..++...++.|||.++......... ...++..|+|||+.....++.++|||||||+++||+| |+.|+....
T Consensus 152 p~Nili~~~~~~kl~dfg~~~~~~~~~~~~---~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~ 228 (303)
T cd05088 152 ARNILVGENYVAKIADFGLSRGQEVYVKKT---MGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMT 228 (303)
T ss_pred hheEEecCCCcEEeCccccCcccchhhhcc---cCCCcccccCHHHHhccCCcccccchhhhhHHHHHHhcCCCCcccCC
Confidence 346677667777899999876432111000 0123568999999988889999999999999999998 999986433
Q ss_pred hhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhcCc
Q 038019 721 DMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLAGDI 788 (866)
Q Consensus 721 ~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~~~~ 788 (866)
..+ ..+. ...+. .+.. +......+.+++.+|++.+|++||++.+++++|+...
T Consensus 229 ~~~---~~~~----~~~~~-----~~~~---~~~~~~~~~~li~~~l~~~p~~Rp~~~~il~~l~~~~ 281 (303)
T cd05088 229 CAE---LYEK----LPQGY-----RLEK---PLNCDDEVYDLMRQCWREKPYERPSFAQILVSLNRML 281 (303)
T ss_pred hHH---HHHH----HhcCC-----cCCC---CCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHH
Confidence 211 1111 11110 0001 0111224566778999999999999999999998543
|
Protein Tyrosine Kinase (PTK) family; Tie2; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie2 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie2 is expressed mainly in endothelial cells and hematopoietic stem cells. It is also found in a subset of tumor-associated monocytes and eosinophils. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2. The binding of A |
| >cd05077 PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Janus kinase 1 | Back alignment and domain information |
|---|
Probab=99.16 E-value=5.4e-11 Score=126.27 Aligned_cols=109 Identities=23% Similarity=0.265 Sum_probs=72.8
Q ss_pred HHhcCCccccccCCCCceeEEEeecCCCCccCceeee-cCCCCchhHHHHHHHHHHHHH-hcCCCCCCCchhhhhcHHHH
Q 038019 653 SATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAM-RGHLTEKADVFSFGVVALEII-SGRASSDKSLDMEKIYLLEW 730 (866)
Q Consensus 653 ~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~-~~~~t~ksDVySfGvvLlEl~-tg~~p~~~~~~~~~~~l~~~ 730 (866)
.++.|||.+..+... ....++..|||||++. ...++.++|||||||++|||+ +|+.|+......+. ..
T Consensus 151 ~~l~d~g~~~~~~~~------~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~~l~el~~~~~~p~~~~~~~~~----~~ 220 (262)
T cd05077 151 IKLSDPGIPITVLSR------QECVERIPWIAPECVEDSKNLSIAADKWSFGTTLWEICYNGEIPLKDKTLAEK----ER 220 (262)
T ss_pred eEeCCCCCCccccCc------ccccccccccChhhhcCCCCCCchhHHHHHHHHHHHHHhCCCCCCCCcchhHH----HH
Confidence 456788877655322 1235788999999887 567899999999999999998 58887654321111 11
Q ss_pred HHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHH
Q 038019 731 AWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAML 784 (866)
Q Consensus 731 ~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L 784 (866)
. .. +.. ....| ....+.+++..||+.+|++||+|.++++.+
T Consensus 221 ~---~~-~~~-~~~~~--------~~~~~~~li~~cl~~dp~~Rp~~~~il~~~ 261 (262)
T cd05077 221 F---YE-GQC-MLVTP--------SCKELADLMTHCMNYDPNQRPFFRAIMRDI 261 (262)
T ss_pred H---Hh-cCc-cCCCC--------ChHHHHHHHHHHcCCChhhCcCHHHHHHhc
Confidence 1 11 100 01111 123455677799999999999999999876
|
Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalytic dom |
| >cd06654 STKc_PAK1 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 1 | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.8e-11 Score=132.39 Aligned_cols=124 Identities=19% Similarity=0.226 Sum_probs=83.1
Q ss_pred cccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCCchhh
Q 038019 644 NIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSLDME 723 (866)
Q Consensus 644 ~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~~~ 723 (866)
|++...+...++.|||.+..+....- ......|+..|+|||+.....++.++|||||||+++||++|+.|+....+.+
T Consensus 146 Nill~~~~~~kl~dfg~~~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~s~Gvil~~l~~g~~pf~~~~~~~ 223 (296)
T cd06654 146 NILLGMDGSVKLTDFGFCAQITPEQS--KRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNENPLR 223 (296)
T ss_pred HEEEcCCCCEEECccccchhcccccc--ccCcccCCccccCHHHHcCCCCCccchHHHHHHHHHHHHhCCCCCCCCCHHH
Confidence 55655556678899998776543221 1122368899999999998889999999999999999999999987543211
Q ss_pred hhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 724 KIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 724 ~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
. +. .....+ .+.+ ..+......+.++..+|++.+|++||++.||++
T Consensus 224 ~--~~----~~~~~~------~~~~-~~~~~~~~~l~~li~~~l~~~p~~Rpt~~eil~ 269 (296)
T cd06654 224 A--LY----LIATNG------TPEL-QNPEKLSAIFRDFLNRCLDMDVEKRGSAKELLQ 269 (296)
T ss_pred h--HH----HHhcCC------CCCC-CCccccCHHHHHHHHHHCcCCcccCcCHHHHhh
Confidence 1 11 111111 0111 011111234556777999999999999999986
|
Serine/threonine kinases (STKs), p21-activated kinase (PAK) 1, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK1 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding |
| >cd08219 STKc_Nek3 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 3 | Back alignment and domain information |
|---|
Probab=99.15 E-value=1e-11 Score=131.17 Aligned_cols=124 Identities=16% Similarity=0.184 Sum_probs=84.5
Q ss_pred CcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCCchh
Q 038019 643 PNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSLDM 722 (866)
Q Consensus 643 ~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~~ 722 (866)
.|++..++...++.|||.++.+...+ .......|+..|+|||+.....++.++||||||++++||++|+.|++.....
T Consensus 129 ~nili~~~~~~~l~dfg~~~~~~~~~--~~~~~~~~~~~~~aPE~~~~~~~~~~~Dv~slG~i~~~l~~g~~p~~~~~~~ 206 (255)
T cd08219 129 KNIFLTQNGKVKLGDFGSARLLTSPG--AYACTYVGTPYYVPPEIWENMPYNNKSDIWSLGCILYELCTLKHPFQANSWK 206 (255)
T ss_pred ceEEECCCCcEEEcccCcceeecccc--cccccccCCccccCHHHHccCCcCchhhhhhhchhheehhhccCCCCCCCHH
Confidence 35666556667788999887765422 2223446889999999998889999999999999999999999998753221
Q ss_pred hhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 038019 723 EKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAM 783 (866)
Q Consensus 723 ~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~ 783 (866)
. ..... ..+... + +... ....+.++..+|++.+|++||++.+|+..
T Consensus 207 ~------~~~~~-~~~~~~----~-~~~~---~~~~~~~li~~~l~~~P~~Rp~~~~il~~ 252 (255)
T cd08219 207 N------LILKV-CQGSYK----P-LPSH---YSYELRSLIKQMFKRNPRSRPSATTILSR 252 (255)
T ss_pred H------HHHHH-hcCCCC----C-CCcc---cCHHHHHHHHHHHhCCcccCCCHHHHhhc
Confidence 1 11111 111111 1 1111 11234556679999999999999999764
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 3 (Nek3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek3 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek3 is primarily localized in the cytoplasm and shows no cell cycle-dependent changes in its activity. It is present in the axons of neurons and affects morphogenesis and polarity through its regulation of microtubule acetylation. Nek3 modulates the signaling of the prolactin receptor through its activati |
| >cd05037 PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases | Back alignment and domain information |
|---|
Probab=99.15 E-value=4.5e-11 Score=126.38 Aligned_cols=120 Identities=22% Similarity=0.223 Sum_probs=81.0
Q ss_pred CcccCHHHH-------HHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecC--CCCchhHHHHHHHHHHHHHh-c
Q 038019 643 PNIFGYAEL-------RSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRG--HLTEKADVFSFGVVALEIIS-G 712 (866)
Q Consensus 643 ~~~~~~~~~-------~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~--~~t~ksDVySfGvvLlEl~t-g 712 (866)
.|++...+. ..++.|||.++.+... ....++..|+|||++... .++.++|||||||++|||++ |
T Consensus 130 ~Nill~~~~~~~~~~~~~kl~Dfg~a~~~~~~------~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~~~~~l~~~~ 203 (259)
T cd05037 130 KNILVARYGLNEGYVPFIKLSDPGIPITVLSR------EERVERIPWIAPECIRNGQASLTIAADKWSFGTTLLEICSNG 203 (259)
T ss_pred ceEEEecCccccCCceeEEeCCCCcccccccc------cccccCCCccChhhhcCCCCCcchhhHHHHHHHHHHHHHhCC
Confidence 355555444 4678899988876542 223567889999998876 89999999999999999999 4
Q ss_pred CCCCCCCchhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHh
Q 038019 713 RASSDKSLDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLA 785 (866)
Q Consensus 713 ~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~ 785 (866)
..|+......+ ...+. .... ...... ...+.+++..|++.+|++||+|.+|++.|+
T Consensus 204 ~~p~~~~~~~~---~~~~~----~~~~-------~~~~~~---~~~~~~li~~~l~~~p~~Rpt~~~il~~l~ 259 (259)
T cd05037 204 EEPLSTLSSSE---KERFY----QDQH-------RLPMPD---CAELANLINQCWTYDPTKRPSFRAILRDLN 259 (259)
T ss_pred CCCcccCCchh---HHHHH----hcCC-------CCCCCC---chHHHHHHHHHhccChhhCCCHHHHHHhcC
Confidence 66665432111 11111 1000 000001 145666777999999999999999999874
|
Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; pseudokinase domain (repeat1). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the ki |
| >cd05601 STKc_CRIK Catalytic domain of the Protein Serine/Threonine Kinase, Citron Rho-interacting kinase | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.8e-11 Score=134.77 Aligned_cols=127 Identities=17% Similarity=0.209 Sum_probs=83.1
Q ss_pred CCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeee------cCCCCchhHHHHHHHHHHHHHhcCCC
Q 038019 642 KPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAM------RGHLTEKADVFSFGVVALEIISGRAS 715 (866)
Q Consensus 642 ~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~------~~~~t~ksDVySfGvvLlEl~tg~~p 715 (866)
..|++...+...++.|||.++.+...+.. ......||+.|+|||++. ...++.++|||||||+++||+||+.|
T Consensus 130 p~NIll~~~~~~kL~Dfg~a~~~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DiwslG~il~el~~g~~P 208 (330)
T cd05601 130 PENVLIDRTGHIKLADFGSAARLTANKMV-NSKLPVGTPDYIAPEVLTTMNGDGKGTYGVECDWWSLGVIAYEMIYGRSP 208 (330)
T ss_pred hHheEECCCCCEEeccCCCCeECCCCCce-eeecccCCccccCHHHhccccccccCCCCCcceeecccceeeeeccCCCC
Confidence 34677666677889999999888655432 223346899999999886 46788999999999999999999999
Q ss_pred CCCCchhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 716 SDKSLDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 716 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
+....... .............. |..... ..+ +.++...|++ +|++||++.++++
T Consensus 209 f~~~~~~~------~~~~i~~~~~~~~~--~~~~~~-~~~---~~~li~~ll~-~p~~R~t~~~l~~ 262 (330)
T cd05601 209 FHEGTSAK------TYNNIMNFQRFLKF--PEDPKV-SSD---FLDLIQSLLC-GQKERLGYEGLCC 262 (330)
T ss_pred CCCCCHHH------HHHHHHcCCCccCC--CCCCCC-CHH---HHHHHHHHcc-ChhhCCCHHHHhC
Confidence 97543221 11122111111111 111111 223 3344457887 9999999999874
|
Serine/Threonine Kinases (STKs), Citron Rho-interacting kinase (CRIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CRIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CRIK is also called citron kinase. It contains a catalytic domain, a central coiled-coil domain, and a C-terminal region containing a Rho-binding domain (RBD), a zinc finger, and a pleckstrin homology (PH) domain, in addition to other motifs. CRIK, an effector of the small GTPase Rho, plays an important function during cytokinesis and affects its contractile process. CRIK-deficient mice show severe ataxia and epilepsy as a result of abnor |
| >cd06655 STKc_PAK2 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 2 | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.9e-11 Score=132.29 Aligned_cols=124 Identities=15% Similarity=0.208 Sum_probs=83.2
Q ss_pred cccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCCchhh
Q 038019 644 NIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSLDME 723 (866)
Q Consensus 644 ~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~~~ 723 (866)
|++...+...++.|||.+..+...... .....|+..|+|||...++.++.++|||||||+++|++||+.|+......+
T Consensus 145 Nili~~~~~~kl~dfg~~~~~~~~~~~--~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slGvil~~lltg~~pf~~~~~~~ 222 (296)
T cd06655 145 NVLLGMDGSVKLTDFGFCAQITPEQSK--RSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMVEGEPPYLNENPLR 222 (296)
T ss_pred HEEECCCCCEEEccCccchhccccccc--CCCcCCCccccCcchhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHH
Confidence 566666666778999988776543321 112357889999999998999999999999999999999999987543322
Q ss_pred hhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 724 KIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 724 ~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
.. .+. ...+ ......+ ... ...+.+++.+|++.+|++||+|.+|++
T Consensus 223 ~~---~~~---~~~~-~~~~~~~--~~~----~~~~~~li~~~l~~dp~~Rpt~~~il~ 268 (296)
T cd06655 223 AL---YLI---ATNG-TPELQNP--EKL----SPIFRDFLNRCLEMDVEKRGSAKELLQ 268 (296)
T ss_pred HH---HHH---HhcC-CcccCCc--ccC----CHHHHHHHHHHhhcChhhCCCHHHHhh
Confidence 11 111 1100 0000011 011 123445667999999999999999874
|
Serine/threonine kinases (STKs), p21-activated kinase (PAK) 2, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK2 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding |
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.15 E-value=3.5e-11 Score=135.76 Aligned_cols=201 Identities=29% Similarity=0.379 Sum_probs=155.6
Q ss_pred EEEccCCCCCCCCCccccCCCCcCEEeccCCcCCCCCCccccCCC-CCCEeeccCCCCCCCCchhhcCCCCccEEEeecC
Q 038019 93 VLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLK-ELTVLAFGTNNFSGALPPELGNLAKLEQLYIDSC 171 (866)
Q Consensus 93 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~-~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n 171 (866)
.|++..|.+.. ....+..++.++.|++.+|.++ .+|.....+. +|+.|++++|++. .+|..++.+++|+.|++++|
T Consensus 97 ~l~~~~~~~~~-~~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLRS-NISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeecccccccc-CchhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence 68888887743 3334566788999999999988 6677777774 8999999999887 55677888999999999999
Q ss_pred CCCCCChhhhhcCcCCCEEEecCCCCCCCCcccccCCCCCCeEEccCCCCCCCCchhhcCCCCCCEEEccCccCCCCCch
Q 038019 172 GAGGEIPSTFAKLRNMQTLWASDNPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLESLQMSDIYNVSSSLD 251 (866)
Q Consensus 172 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~ 251 (866)
+++.. |.....+++|+.|++++|+++ .+|.....+..|++|.+++|.+. ..+..+.++.++..|.+.+|.+... ..
T Consensus 174 ~l~~l-~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~~-~~ 249 (394)
T COG4886 174 DLSDL-PKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLEDL-PE 249 (394)
T ss_pred hhhhh-hhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeeec-cc
Confidence 88754 444447888999999999988 56666666667999999999644 4566778888888888777665432 45
Q ss_pred hhhcCCCCCceeccCcccccCCCcccCCCCCcCEEeeecCcCcccCCcccC
Q 038019 252 FVMSLKNLTDLSLRNALITGTIPFGIGELQMLQILDLSFNNLTGQIPATLF 302 (866)
Q Consensus 252 ~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~ 302 (866)
.+..+++|+.|++++|.++.... ++.+.+|+.|++++|.+....+....
T Consensus 250 ~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~~~~~ 298 (394)
T COG4886 250 SIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNALPLIAL 298 (394)
T ss_pred hhccccccceecccccccccccc--ccccCccCEEeccCccccccchhhhc
Confidence 56778889999999999985544 88899999999999999876665443
|
|
| >cd05588 STKc_aPKC Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.4e-11 Score=135.34 Aligned_cols=121 Identities=17% Similarity=0.174 Sum_probs=80.6
Q ss_pred cccCHHHHHHHhcCCcccccc-CCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCCchh
Q 038019 644 NIFGYAELRSATKDFNRSNKL-GEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSLDM 722 (866)
Q Consensus 644 ~~~~~~~~~~~~~dF~~~~~l-g~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~~ 722 (866)
|++...+...++.|||.++.. ..+. ......||..|+|||++.+..++.++|||||||+++||+||+.|++.....
T Consensus 126 Nili~~~~~~kL~Dfg~~~~~~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~el~~g~~Pf~~~~~~ 202 (329)
T cd05588 126 NVLLDAEGHIKLTDYGMCKEGIRPGD---TTSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGMS 202 (329)
T ss_pred HeEECCCCCEEECcCccccccccCCC---ccccccCCccccCHHHHcCCCCCCccceechHHHHHHHHHCCCCccccccc
Confidence 666666666788999988642 2221 223346899999999999999999999999999999999999999742211
Q ss_pred h--hhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCC
Q 038019 723 E--KIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPP 776 (866)
Q Consensus 723 ~--~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPs 776 (866)
+ .....+|.......+.. .++.... ..+.++...|++.+|.+||+
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~------~~p~~~~---~~~~~li~~~L~~dP~~R~~ 249 (329)
T cd05588 203 DNPDQNTEDYLFQVILEKQI------RIPRSLS---VKASSVLKGFLNKDPKERLG 249 (329)
T ss_pred ccccccchHHHHHHHHcCCC------CCCCCCC---HHHHHHHHHHhccCHHHcCC
Confidence 1 11223344443332211 1111111 23455666999999999997
|
Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. They contain a C2-like region, instead of a calcium-binding (C2) region found in classical PKCs, in their regulatory domain. There are two aPKC isoforms, zeta and iota. aPKCs are involved in many cellular functions incl |
| >cd05620 STKc_nPKC_delta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C delta | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.5e-11 Score=132.60 Aligned_cols=121 Identities=19% Similarity=0.184 Sum_probs=81.0
Q ss_pred CcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCCchh
Q 038019 643 PNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSLDM 722 (866)
Q Consensus 643 ~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~~ 722 (866)
.|++...+...++.|||.++....+. .......||.+|+|||++.+..++.++|||||||+++||++|+.|+......
T Consensus 125 ~Nil~~~~~~~kl~Dfg~~~~~~~~~--~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~el~~g~~Pf~~~~~~ 202 (316)
T cd05620 125 DNVMLDRDGHIKIADFGMCKENVFGD--NRASTFCGTPDYIAPEILQGLKYTFSVDWWSFGVLLYEMLIGQSPFHGDDED 202 (316)
T ss_pred HHeEECCCCCEEeCccCCCeecccCC--CceeccCCCcCccCHHHHcCCCCCcccchhhhHHHHHHHHhCCCCCCCCCHH
Confidence 36666666677889999876432211 1123456899999999999999999999999999999999999999754321
Q ss_pred hhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHH-HHH
Q 038019 723 EKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMS-RVV 781 (866)
Q Consensus 723 ~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~-~V~ 781 (866)
.+.+.+ ..+ .+.+......+ +.++...|++.||++||++. ++.
T Consensus 203 ---~~~~~~----~~~------~~~~~~~~~~~---~~~li~~~l~~dP~~R~~~~~~~~ 246 (316)
T cd05620 203 ---ELFESI----RVD------TPHYPRWITKE---SKDILEKLFERDPTRRLGVVGNIR 246 (316)
T ss_pred ---HHHHHH----HhC------CCCCCCCCCHH---HHHHHHHHccCCHHHcCCChHHHH
Confidence 111111 111 12222222223 34455699999999999985 444
|
Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), delta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. I |
| >cd05034 PTKc_Src_like Catalytic domain of Src kinase-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.5e-11 Score=128.61 Aligned_cols=128 Identities=24% Similarity=0.321 Sum_probs=87.6
Q ss_pred CcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHh-cCCCCCCCch
Q 038019 643 PNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIIS-GRASSDKSLD 721 (866)
Q Consensus 643 ~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~t-g~~p~~~~~~ 721 (866)
.|++..++...++.|||.+..++...+ ....+..++..|+|||+..++.++.++|||||||+++|++| |+.|+.....
T Consensus 132 ~nili~~~~~~~l~d~g~~~~~~~~~~-~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~il~~l~t~g~~p~~~~~~ 210 (261)
T cd05034 132 RNILVGENLVCKIADFGLARLIEDDEY-TAREGAKFPIKWTAPEAANYGRFTIKSDVWSFGILLTEIVTYGRVPYPGMTN 210 (261)
T ss_pred heEEEcCCCCEEECccccceeccchhh-hhhhccCCCccccCHHHhccCCcCchhHHHHHHHHHHHHHhCCCCCCCCCCH
Confidence 466666666778889998887765322 11122335578999999998899999999999999999999 9999864332
Q ss_pred hhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhc
Q 038019 722 MEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLAG 786 (866)
Q Consensus 722 ~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~~ 786 (866)
.. ..++... +. ..... ......+.+++.+|++.+|++||+++++.+.|+.
T Consensus 211 ~~---~~~~~~~----~~-----~~~~~---~~~~~~~~~~i~~~l~~~p~~Rp~~~~l~~~l~~ 260 (261)
T cd05034 211 RE---VLEQVER----GY-----RMPRP---PNCPEELYDLMLQCWDKDPEERPTFEYLQSFLED 260 (261)
T ss_pred HH---HHHHHHc----CC-----CCCCC---CCCCHHHHHHHHHHcccCcccCCCHHHHHHHHhc
Confidence 11 1221111 10 00000 1112346667789999999999999999999873
|
Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-t |
| >cd07846 STKc_CDKL2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 2 and 3 | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.5e-11 Score=132.29 Aligned_cols=138 Identities=22% Similarity=0.298 Sum_probs=85.5
Q ss_pred CcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeec-CCCCchhHHHHHHHHHHHHHhcCCCCCCCch
Q 038019 643 PNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMR-GHLTEKADVFSFGVVALEIISGRASSDKSLD 721 (866)
Q Consensus 643 ~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~-~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~ 721 (866)
.|++..++...++.|||.+..+..+. ..+....++..|+|||+..+ ..++.++|||||||+++||+||+.|+.....
T Consensus 129 ~ni~~~~~~~~~l~dfg~~~~~~~~~--~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~el~~g~~~~~~~~~ 206 (286)
T cd07846 129 ENILVSQSGVVKLCDFGFARTLAAPG--EVYTDYVATRWYRAPELLVGDTKYGRAVDIWAVGCLVTEMLTGEPLFPGDSD 206 (286)
T ss_pred HHEEECCCCcEEEEeeeeeeeccCCc--cccCcccceeeccCcHHhccccccCchHhHHHHHHHHHHHHcCCCCCCCCch
Confidence 35666666677888999887765443 34455568899999998864 4678999999999999999999988864332
Q ss_pred hhhh-cHHHHHHH-------HhhcCCc-ccccCCcccc------cCHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 722 MEKI-YLLEWAWN-------LHENNQS-FGLVDPTLTE------FNDKEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 722 ~~~~-~l~~~~~~-------~~~~~~~-~~~~d~~l~~------~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
.+.. .+..+... ....... .....+.... ........+.+++.+|++.+|++||+|.+|++
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rp~~~~il~ 282 (286)
T cd07846 207 IDQLYHIIKCLGNLIPRHQEIFQKNPLFAGMRLPEVKEIEPLEKRFPKLSGLVLDLAKQCLRIDPDDRPSSSQLLH 282 (286)
T ss_pred HHHHHHHHHHhCCCchhhHHHhccchHhhccccccccCcchHHHhCCCcCHHHHHHHHHHhcCCcccchhHHHHhc
Confidence 1111 11111000 0000000 0000111100 00112345667888999999999999999875
|
Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 2 (CDKL2) and CDKL3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL2 and CDKL3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL2, also called p56 KKIAMRE, is expressed in testis, kidney, lung, and brain. It functions mainly in mature neurons and plays an important role in learning and memory. Inactivation of CDKL3, also called NKI |
| >cd07849 STKc_ERK1_2_like Catalytic domain of Extracellular signal-Regulated Kinase 1 and 2-like Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.7e-11 Score=135.16 Aligned_cols=137 Identities=13% Similarity=0.100 Sum_probs=84.5
Q ss_pred cccCHHHHHHHhcCCccccccCCCCc-eeEEEeecCCCCccCceeeec-CCCCchhHHHHHHHHHHHHHhcCCCCCCCch
Q 038019 644 NIFGYAELRSATKDFNRSNKLGEGGY-GPVYKVTANSYGYLAPEYAMR-GHLTEKADVFSFGVVALEIISGRASSDKSLD 721 (866)
Q Consensus 644 ~~~~~~~~~~~~~dF~~~~~lg~g~~-g~vy~~~~gt~gY~aPE~~~~-~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~ 721 (866)
|++...+...++.|||.++.+..... ........||..|+|||++.+ ..++.++|||||||+++||+||+.|+.....
T Consensus 136 Nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DvwslGvil~el~~G~~~f~~~~~ 215 (336)
T cd07849 136 NLLLNTNCDLKICDFGLARIADPEHDHTGFLTEYVATRWYRAPEIMLNSKGYTKAIDIWSVGCILAEMLSNRPLFPGKDY 215 (336)
T ss_pred HEEECCCCCEEECcccceeeccccccccCCcCCcCcCCCccChHHhhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCH
Confidence 55655556677899998877654321 111223468899999998754 5689999999999999999999999864322
Q ss_pred hhhhcHHHHHHHHhhcC---CcccccCCcc----------cccC-----HHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 038019 722 MEKIYLLEWAWNLHENN---QSFGLVDPTL----------TEFN-----DKEALRVIGVALLCTQTSPMMRPPMSRVVAM 783 (866)
Q Consensus 722 ~~~~~l~~~~~~~~~~~---~~~~~~d~~l----------~~~~-----~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~ 783 (866)
.. ...+........ ....+.+... .... ......+.+++.+|++.+|++||++.|+++.
T Consensus 216 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~Rpt~~e~l~h 292 (336)
T cd07849 216 LH---QLNLILGVLGTPSQEDLNCIISLRARNYIKSLPFKPKVPWNKLFPNADPKALDLLDKMLTFNPHKRITVEEALAH 292 (336)
T ss_pred HH---HHHHHHHHcCCCCHHHHHHhhchhhhhHHhhcCcCCcccHHHHhcccCcHHHHHHHHHcCCChhhCcCHHHHhcC
Confidence 11 111111111100 0000111000 0000 1112346678889999999999999999875
|
Serine/Threonine Kinases (STKs), Extracellular signal-regulated kinases 1 and 2 (ERK1/2) and Fus3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This ERK1/2-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the mitogen-activated protein kinases (MAPKs) ERK1, ERK2, baker's yeast Fus3, and similar proteins. MAPK pathways are important mediators of cellular responses to extracellular signals. ERK1/2 activation is preferentially by mitogenic factors, differentiation stimuli, and cytokines, through a kinase cascade involving the MAPK kinases MEK1/2 and a MAPK kinase |
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=8.5e-11 Score=138.93 Aligned_cols=110 Identities=24% Similarity=0.478 Sum_probs=99.9
Q ss_pred CcCEEeccCCcCCCCCCccccCCCCCCEeeccCCCCCCCCchhhcCCCCccEEEeecCCCCCCChhhhhcCcCCCEEEec
Q 038019 114 RLMFLSFSHNDFSGPVPRELGNLKELTVLAFGTNNFSGALPPELGNLAKLEQLYIDSCGAGGEIPSTFAKLRNMQTLWAS 193 (866)
Q Consensus 114 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~ 193 (866)
.++.|+|++|.++|.+|..|+.+++|+.|+|++|.+++.+|..++.+++|+.|+|++|++++.+|..+++|++|+.|+|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 48899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCcccccCC-CCCCeEEccCCCCCC
Q 038019 194 DNPFTGKIPDFIGNW-TKLKSLRFQGNSFQG 223 (866)
Q Consensus 194 ~N~l~~~~p~~l~~l-~~L~~L~L~~N~l~~ 223 (866)
+|.++|.+|..++.+ .++..+++.+|....
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc 529 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLC 529 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCcccc
Confidence 999999999988764 467888999887543
|
|
| >cd05584 STKc_p70S6K Catalytic domain of the Protein Serine/Threonine Kinase, 70 kDa ribosomal protein S6 kinase | Back alignment and domain information |
|---|
Probab=99.14 E-value=5.3e-11 Score=130.51 Aligned_cols=122 Identities=17% Similarity=0.190 Sum_probs=82.1
Q ss_pred CcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCCchh
Q 038019 643 PNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSLDM 722 (866)
Q Consensus 643 ~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~~ 722 (866)
.|++...+...++.|||.++.....+ .......||.+|+|||++....++.++|||||||+++||++|+.|+......
T Consensus 129 ~Nil~~~~~~~kl~Dfg~~~~~~~~~--~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~pf~~~~~~ 206 (323)
T cd05584 129 ENILLDAQGHVKLTDFGLCKESIHEG--TVTHTFCGTIEYMAPEILMRSGHGKAVDWWSLGALMYDMLTGAPPFTAENRK 206 (323)
T ss_pred HHeEECCCCCEEEeeCcCCeecccCC--CcccccCCCccccChhhccCCCCCCcceecccHHHHHHHhcCCCCCCCCCHH
Confidence 36676666677899999876432221 2223346899999999999888999999999999999999999998753321
Q ss_pred hhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCC-----CHHHHHH
Q 038019 723 EKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRP-----PMSRVVA 782 (866)
Q Consensus 723 ~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RP-----sm~~V~~ 782 (866)
. ...... .+.. .+..... ..+.++...|++.+|++|| ++.++.+
T Consensus 207 ~------~~~~~~-~~~~------~~~~~~~---~~~~~li~~~l~~~p~~R~~~~~~~~~~l~~ 255 (323)
T cd05584 207 K------TIDKIL-KGKL------NLPPYLT---PEARDLLKKLLKRNPSSRLGAGPGDAAEVQS 255 (323)
T ss_pred H------HHHHHH-cCCC------CCCCCCC---HHHHHHHHHHcccCHhHcCCCCCCCHHHHhc
Confidence 1 111111 1111 1111112 2344566699999999999 6776654
|
Serine/Threonine Kinases (STKs), 70 kDa ribosomal protein S6 kinase (p70S6K) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p70S6K subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p70S6K (or S6K) contains only one catalytic kinase domain, unlike p90 ribosomal S6 kinases (RSKs). It acts as a downstream effector of the STK mTOR (mammalian Target of Rapamycin) and plays a role in the regulation of the translation machinery during protein synthesis. p70S6K also plays a pivotal role in regulating cell size and glucose homeostasis. Its targets include S6, the translation initiation factor eIF3, and the in |
| >cd05593 STKc_PKB_gamma Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B gamma | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.3e-11 Score=133.70 Aligned_cols=123 Identities=17% Similarity=0.153 Sum_probs=82.7
Q ss_pred CCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCCch
Q 038019 642 KPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSLD 721 (866)
Q Consensus 642 ~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~ 721 (866)
..|++...+...++.|||.++...... .......||+.|+|||++....++.++|||||||+++||+||+.|+.....
T Consensus 123 p~NIll~~~~~~kL~DfG~~~~~~~~~--~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~elltG~~Pf~~~~~ 200 (328)
T cd05593 123 LENLMLDKDGHIKITDFGLCKEGITDA--ATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDH 200 (328)
T ss_pred HHHeEECCCCcEEEecCcCCccCCCcc--cccccccCCcCccChhhhcCCCCCccCCccccchHHHHHhhCCCCCCCCCH
Confidence 346777777778899999887532211 112334689999999999999999999999999999999999999875332
Q ss_pred hhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCC-----CHHHHHH
Q 038019 722 MEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRP-----PMSRVVA 782 (866)
Q Consensus 722 ~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RP-----sm~~V~~ 782 (866)
.+ +.+ .... + +..+......+ +.++...|++.+|++|| ++.|+++
T Consensus 201 ~~---~~~---~~~~-~------~~~~p~~~~~~---~~~li~~~L~~dP~~R~~~~~~~~~~il~ 250 (328)
T cd05593 201 EK---LFE---LILM-E------DIKFPRTLSAD---AKSLLSGLLIKDPNKRLGGGPDDAKEIMR 250 (328)
T ss_pred HH---HHH---Hhcc-C------CccCCCCCCHH---HHHHHHHHcCCCHHHcCCCCCCCHHHHhc
Confidence 21 111 1110 1 11111111223 34455699999999997 7888764
|
Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, gamma (or Akt3) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-gamma is predominantly expressed in neuronal tissues. Mice deficient in PKB-gamma show a reduction in brain weight due to the decreases in cell size and cell number. PKB-gamma has also been shown to be upregulate |
| >cd08221 STKc_Nek9 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 9 | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.8e-11 Score=127.83 Aligned_cols=124 Identities=19% Similarity=0.204 Sum_probs=85.4
Q ss_pred cccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCCchhh
Q 038019 644 NIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSLDME 723 (866)
Q Consensus 644 ~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~~~ 723 (866)
+++..++...++.|||.+..+..... ......|+..|+|||+..+...+.++||||||++++||++|+.|++.....
T Consensus 131 ni~~~~~~~~kl~d~~~~~~~~~~~~--~~~~~~~~~~y~ape~~~~~~~~~~~Dv~slG~i~~~l~~g~~~~~~~~~~- 207 (256)
T cd08221 131 NIFLTKAGLIKLGDFGISKILGSEYS--MAETVVGTPYYMSPELCQGVKYNFKSDIWALGCVLYELLTLKRTFDATNPL- 207 (256)
T ss_pred hEEEeCCCCEEECcCcceEEcccccc--cccccCCCccccCHhhcCCCCCCCcchhHHHHHHHHHHHHCCCCCCCCCHH-
Confidence 56666666678899998877654331 123346889999999998888999999999999999999999998753321
Q ss_pred hhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHH
Q 038019 724 KIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAML 784 (866)
Q Consensus 724 ~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L 784 (866)
+.+.... .+..... .......+.+++..|++.+|++||++.++++.+
T Consensus 208 -----~~~~~~~-~~~~~~~--------~~~~~~~~~~~i~~~l~~~p~~R~s~~~ll~~~ 254 (256)
T cd08221 208 -----NLVVKIV-QGNYTPV--------VSVYSSELISLVHSLLQQDPEKRPTADEVLDQP 254 (256)
T ss_pred -----HHHHHHH-cCCCCCC--------ccccCHHHHHHHHHHcccCcccCCCHHHHhhCc
Confidence 1222211 1111111 111123455666799999999999999998753
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 9 (Nek9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek9 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek9, also called Nercc1, is primarily a cytoplasmic protein but can also localize in the nucleus. It is involved in modulating chromosome alignment and splitting during mitosis. It interacts with the gamma-tubulin ring complex and the Ran GTPase, and is implicated in microtubule organization. Nek9 associa |
| >cd06607 STKc_TAO Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids proteins | Back alignment and domain information |
|---|
Probab=99.14 E-value=6.1e-11 Score=129.06 Aligned_cols=121 Identities=20% Similarity=0.285 Sum_probs=82.7
Q ss_pred CcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeee---cCCCCchhHHHHHHHHHHHHHhcCCCCCCC
Q 038019 643 PNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAM---RGHLTEKADVFSFGVVALEIISGRASSDKS 719 (866)
Q Consensus 643 ~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~---~~~~t~ksDVySfGvvLlEl~tg~~p~~~~ 719 (866)
.|++...+...++.|||.++...... ...++..|+|||++. .+.++.++|||||||++|||+||+.|+...
T Consensus 144 ~nIl~~~~~~~kL~dfg~~~~~~~~~------~~~~~~~y~aPE~~~~~~~~~~~~~sDv~s~G~il~el~tg~~p~~~~ 217 (307)
T cd06607 144 GNILLTEPGTVKLADFGSASLVSPAN------SFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNM 217 (307)
T ss_pred ccEEECCCCCEEEeecCcceecCCCC------CccCCccccCceeeeccCCCCCCcccchHHHHHHHHHHHcCCCCCCCc
Confidence 46666666677889999887664321 235788999999874 467899999999999999999999998653
Q ss_pred chhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 038019 720 LDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAM 783 (866)
Q Consensus 720 ~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~ 783 (866)
..... ...... . ..+.+. .......+.++...||+.+|++||+|.+|+..
T Consensus 218 ~~~~~------~~~~~~-~-----~~~~~~--~~~~~~~~~~li~~~l~~~p~~Rp~~~~il~~ 267 (307)
T cd06607 218 NAMSA------LYHIAQ-N-----DSPTLS--SNDWSDYFRNFVDSCLQKIPQDRPSSEELLKH 267 (307)
T ss_pred cHHHH------HHHHhc-C-----CCCCCC--chhhCHHHHHHHHHHhcCChhhCcCHHHHhcC
Confidence 32211 111111 0 011111 11123345667779999999999999999864
|
Serine/threonine kinases (STKs), thousand-and-one amino acids (TAO) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. They activate the MAPKs, p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Vertebrates contain three TAO subfamily |
| >cd05616 STKc_cPKC_beta Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C beta | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.1e-11 Score=135.83 Aligned_cols=117 Identities=17% Similarity=0.182 Sum_probs=81.2
Q ss_pred CcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCCchh
Q 038019 643 PNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSLDM 722 (866)
Q Consensus 643 ~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~~ 722 (866)
.|++..++...++.|||.++.....+ .......||+.|+|||++..+.++.++|||||||+++||+||+.|+......
T Consensus 130 ~Nill~~~~~~kL~DfG~~~~~~~~~--~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~elltg~~Pf~~~~~~ 207 (323)
T cd05616 130 DNVMLDSEGHIKIADFGMCKENMWDG--VTTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGEDED 207 (323)
T ss_pred HHeEECCCCcEEEccCCCceecCCCC--CccccCCCChhhcCHHHhcCCCCCCccchhchhHHHHHHHhCCCCCCCCCHH
Confidence 36777777778899999887554222 1233456899999999999999999999999999999999999999754322
Q ss_pred hhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCH
Q 038019 723 EKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPM 777 (866)
Q Consensus 723 ~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm 777 (866)
.+...+. +.. ..... .....+.+++..|++.+|++|++.
T Consensus 208 ---~~~~~i~----~~~------~~~p~---~~s~~~~~li~~~l~~~p~~R~~~ 246 (323)
T cd05616 208 ---ELFQSIM----EHN------VAYPK---SMSKEAVAICKGLMTKHPGKRLGC 246 (323)
T ss_pred ---HHHHHHH----hCC------CCCCC---cCCHHHHHHHHHHcccCHHhcCCC
Confidence 1222111 111 11111 112344566779999999999984
|
Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, beta isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, and |
| >cd05570 STKc_PKC Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase C | Back alignment and domain information |
|---|
Probab=99.14 E-value=7.5e-11 Score=129.00 Aligned_cols=122 Identities=16% Similarity=0.171 Sum_probs=81.5
Q ss_pred CcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCCchh
Q 038019 643 PNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSLDM 722 (866)
Q Consensus 643 ~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~~ 722 (866)
.|++..++...++.|||.++..-... .......||..|+|||++.+..++.++|||||||+++||+||+.|+......
T Consensus 125 ~Nill~~~~~~kl~Dfg~~~~~~~~~--~~~~~~~g~~~y~aPE~~~~~~~~~~~DiwslGvil~~l~~G~~pf~~~~~~ 202 (318)
T cd05570 125 DNVLLDSEGHIKIADFGMCKEGILGG--VTTSTFCGTPDYIAPEILSYQPYGPAVDWWALGVLLYEMLAGQSPFEGDDED 202 (318)
T ss_pred HHeEECCCCcEEecccCCCeecCcCC--CcccceecCccccCHHHhcCCCCCcchhhhhHHHHHHHHhhCCCCCCCCCHH
Confidence 36666666677889999876422111 1122346899999999999999999999999999999999999999754321
Q ss_pred hhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCH-----HHHHH
Q 038019 723 EKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPM-----SRVVA 782 (866)
Q Consensus 723 ~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm-----~~V~~ 782 (866)
. +... ...+. +....... ..+.+++.+|++.||++||++ .++++
T Consensus 203 ~---~~~~----i~~~~------~~~~~~~~---~~~~~li~~~l~~dP~~R~s~~~~~~~~ll~ 251 (318)
T cd05570 203 E---LFQS----ILEDE------VRYPRWLS---KEAKSILKSFLTKNPEKRLGCLPTGEQDIKG 251 (318)
T ss_pred H---HHHH----HHcCC------CCCCCcCC---HHHHHHHHHHccCCHHHcCCCCCCCHHHHhc
Confidence 1 1111 11111 11111112 234556669999999999999 66653
|
Serine/Threonine Kinases (STKs), Protein Kinase C (PKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, classical PKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. Novel PKCs are calcium-independent, but require DAG and PS for activity, while atypical PKCs only re |
| >cd05632 STKc_GRK5 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 5 | Back alignment and domain information |
|---|
Probab=99.14 E-value=3e-11 Score=130.01 Aligned_cols=120 Identities=18% Similarity=0.175 Sum_probs=80.7
Q ss_pred cccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCCchhh
Q 038019 644 NIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSLDME 723 (866)
Q Consensus 644 ~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~~~ 723 (866)
|++..++...++.|||.+..+..+ ..+....|+..|+|||+..+..++.++|||||||+++|++||+.|+.......
T Consensus 132 Nili~~~~~~kl~Dfg~~~~~~~~---~~~~~~~g~~~~~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~P~~~~~~~~ 208 (285)
T cd05632 132 NILLDDYGHIRISDLGLAVKIPEG---ESIRGRVGTVGYMAPEVLNNQRYTLSPDYWGLGCLIYEMIEGQSPFRGRKEKV 208 (285)
T ss_pred HEEECCCCCEEEecCCcceecCCC---CcccCCCCCcCccChHHhcCCCCCcccchHHHHHHHHHHHhCCCCCCCCCHHH
Confidence 555555556778999988776543 23455679999999999998999999999999999999999999997543221
Q ss_pred hhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHH
Q 038019 724 KIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMS 778 (866)
Q Consensus 724 ~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~ 778 (866)
.. .. +........ +.. .......+.+++..|++.+|++||++.
T Consensus 209 ~~--~~-~~~~~~~~~------~~~---~~~~~~~~~~li~~~l~~~P~~R~~~~ 251 (285)
T cd05632 209 KR--EE-VDRRVLETE------EVY---SAKFSEEAKSICKMLLTKDPKQRLGCQ 251 (285)
T ss_pred HH--HH-HHHhhhccc------ccc---CccCCHHHHHHHHHHccCCHhHcCCCc
Confidence 11 11 111111110 011 111122345566799999999999954
|
Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK5 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK5 is widely expressed in many tissues. It associates with |
| >cd07860 STKc_CDK2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase 2 and 3 | Back alignment and domain information |
|---|
Probab=99.14 E-value=4.3e-11 Score=128.53 Aligned_cols=135 Identities=16% Similarity=0.133 Sum_probs=82.1
Q ss_pred cccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCC-CCchhHHHHHHHHHHHHHhcCCCCCCCchh
Q 038019 644 NIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGH-LTEKADVFSFGVVALEIISGRASSDKSLDM 722 (866)
Q Consensus 644 ~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~-~t~ksDVySfGvvLlEl~tg~~p~~~~~~~ 722 (866)
|++..++...++.|||.++.++.+. ..+....++..|+|||+..+.+ ++.++|||||||+++||+||+.|+......
T Consensus 130 nill~~~~~~~l~dfg~~~~~~~~~--~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~~l~tg~~p~~~~~~~ 207 (284)
T cd07860 130 NLLINTEGAIKLADFGLARAFGVPV--RTYTHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEI 207 (284)
T ss_pred HEEECCCCCEEEeeccchhhcccCc--cccccccccccccCCeEEecCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCCHH
Confidence 5666666677889999888775432 2233345788999999887644 689999999999999999999998653321
Q ss_pred hhhcHHHHHHHHhhc---------------CCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 723 EKIYLLEWAWNLHEN---------------NQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 723 ~~~~l~~~~~~~~~~---------------~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
+ .+.+.....-.. ....+.....+..........+.++..+|++.||++||+|+++++
T Consensus 208 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~~l~ 280 (284)
T cd07860 208 D--QLFRIFRTLGTPDEVVWPGVTSLPDYKPSFPKWARQDFSKVVPPLDEDGRDLLSQMLHYDPNKRISAKAALA 280 (284)
T ss_pred H--HHHHHHHHhCCCChhhhhhhhHHHHHHhhcccccccCHHHHcccCCHHHHHHHHHhcCCCcccCCCHHHHhc
Confidence 1 111111100000 000000000000000001123456777999999999999999874
|
Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 2 (CDK2) and CDK3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK2/3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex |
| >cd05602 STKc_SGK1 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 1 | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.5e-11 Score=133.26 Aligned_cols=125 Identities=16% Similarity=0.114 Sum_probs=82.7
Q ss_pred CcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCCchh
Q 038019 643 PNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSLDM 722 (866)
Q Consensus 643 ~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~~ 722 (866)
.|++...+...++.|||.++...... .......||+.|||||++.+..++.++|||||||+++||++|+.|+......
T Consensus 125 ~Nili~~~~~~kl~DfG~a~~~~~~~--~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~ 202 (325)
T cd05602 125 ENILLDSQGHIVLTDFGLCKENIEHN--GTTSTFCGTPEYLAPEVLHKQPYDRTVDWWCLGAVLYEMLYGLPPFYSRNTA 202 (325)
T ss_pred HHeEECCCCCEEEccCCCCcccccCC--CCcccccCCccccCHHHHcCCCCCCccccccccHHHHHHhcCCCCCCCCCHH
Confidence 36666666677889999887543211 1123346899999999999999999999999999999999999999753322
Q ss_pred hhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHh
Q 038019 723 EKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLA 785 (866)
Q Consensus 723 ~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~ 785 (866)
+ ..+++.. ... .+++. . ..+ +.++...|++.+|.+||++.+.+..+.
T Consensus 203 ~---~~~~i~~----~~~--~~~~~---~-~~~---~~~li~~~l~~~p~~R~~~~~~~~~i~ 249 (325)
T cd05602 203 E---MYDNILN----KPL--QLKPN---I-TNS---ARHLLEGLLQKDRTKRLGAKDDFMEIK 249 (325)
T ss_pred H---HHHHHHh----CCc--CCCCC---C-CHH---HHHHHHHHcccCHHHCCCCCCCHHHHh
Confidence 1 2222111 100 01111 1 223 334555899999999999876554443
|
Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK1 is ubiquitously expressed and is under transcriptional control of numerous stimuli including cell stress (cell shrinkage), serum, hormones (gluco- and mineralocorticoids), gonadotropins, growth factors, interleukin-6, and other cytokines. It plays roles in sodium retention and potassium elimination in the kidney, nutrient transport, salt |
| >cd06639 STKc_myosinIIIB Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIB myosin | Back alignment and domain information |
|---|
Probab=99.13 E-value=3.8e-11 Score=129.48 Aligned_cols=124 Identities=20% Similarity=0.233 Sum_probs=82.6
Q ss_pred cccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecC-----CCCchhHHHHHHHHHHHHHhcCCCCCC
Q 038019 644 NIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRG-----HLTEKADVFSFGVVALEIISGRASSDK 718 (866)
Q Consensus 644 ~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~-----~~t~ksDVySfGvvLlEl~tg~~p~~~ 718 (866)
|++...+...++.|||.++.+...... .....|+..|+|||+...+ .++.|+|||||||+++||++|+.|+..
T Consensus 158 nili~~~~~~kl~dfg~~~~~~~~~~~--~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slGvi~~el~~g~~p~~~ 235 (291)
T cd06639 158 NILLTTEGGVKLVDFGVSAQLTSTRLR--RNTSVGTPFWMAPEVIACEQQYDYSYDARCDVWSLGITAIELGDGDPPLFD 235 (291)
T ss_pred HEEEcCCCCEEEeecccchhccccccc--ccCccCCccccChhhhcCCCCcccccCCccchHHHHHHHHHHhhCCCCCCC
Confidence 555555556778999988877654321 1234688999999987644 368999999999999999999999875
Q ss_pred CchhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 719 SLDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 719 ~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
..... .+..+ ..+....+.++ .+....+.+++.+|++.+|++||+|.|+++
T Consensus 236 ~~~~~--~~~~~-----~~~~~~~~~~~------~~~~~~l~~li~~~l~~~p~~Rps~~~il~ 286 (291)
T cd06639 236 MHPVK--TLFKI-----PRNPPPTLLHP------EKWCRSFNHFISQCLIKDFEARPSVTHLLE 286 (291)
T ss_pred CcHHH--HHHHH-----hcCCCCCCCcc------cccCHHHHHHHHHHhhcChhhCcCHHHHhc
Confidence 43221 11111 11111111111 112234666788999999999999999875
|
Serine/threonine kinases (STKs), class IIIB myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. They may also function as cargo carriers during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. Class IIIB myosin is expressed highly in retina. It is also pre |
| >cd06625 STKc_MEKK3_like Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.6e-11 Score=128.51 Aligned_cols=127 Identities=17% Similarity=0.162 Sum_probs=83.0
Q ss_pred CcccCHHHHHHHhcCCccccccCCCCceeE-EEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCCch
Q 038019 643 PNIFGYAELRSATKDFNRSNKLGEGGYGPV-YKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSLD 721 (866)
Q Consensus 643 ~~~~~~~~~~~~~~dF~~~~~lg~g~~g~v-y~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~ 721 (866)
.|++..++...++.|||.++.+........ +....|+..|+|||+..+..++.++|||||||+++|+++|+.|+.....
T Consensus 133 ~nilv~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~ 212 (263)
T cd06625 133 ANILRDSAGNVKLGDFGASKRLQTICSSGTGMKSVTGTPYWMSPEVISGEGYGRKADVWSVGCTVVEMLTEKPPWAEFEA 212 (263)
T ss_pred HHEEEcCCCCEEEeecccceeccccccccccccCCCcCccccCcceeccCCCCchhhhHHHHHHHHHHHhCCCCccccch
Confidence 366666666677889998876543211110 1223577899999999999999999999999999999999999864322
Q ss_pred hhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 038019 722 MEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAM 783 (866)
Q Consensus 722 ~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~ 783 (866)
.. ...+. .... ..+.+.. .....+.++...|++.+|++||++.|+++.
T Consensus 213 ~~---~~~~~---~~~~-----~~~~~~~---~~~~~~~~li~~~l~~~p~~Rpt~~~ll~~ 260 (263)
T cd06625 213 MA---AIFKI---ATQP-----TNPQLPS---HVSPDARNFLRRTFVENAKKRPSAEELLRH 260 (263)
T ss_pred HH---HHHHH---hccC-----CCCCCCc---cCCHHHHHHHHHHhhcCcccCCCHHHHhhC
Confidence 11 11111 1100 0111111 112234556669999999999999999864
|
Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades t |
| >cd08218 STKc_Nek1 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 1 | Back alignment and domain information |
|---|
Probab=99.13 E-value=9.2e-12 Score=131.50 Aligned_cols=122 Identities=16% Similarity=0.203 Sum_probs=83.2
Q ss_pred cccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCCchhh
Q 038019 644 NIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSLDME 723 (866)
Q Consensus 644 ~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~~~ 723 (866)
|++...+...++.|||.+..+...... .....|+..|+|||+..++..+.|+|||||||+++|++||+.|+......
T Consensus 131 nil~~~~~~~~l~d~~~~~~~~~~~~~--~~~~~~~~~~~~pe~~~~~~~~~~~Dv~slG~i~~~l~~g~~~~~~~~~~- 207 (256)
T cd08218 131 NIFLTKDGTIKLGDFGIARVLNSTVEL--ARTCIGTPYYLSPEICENRPYNNKSDIWALGCVLYEMCTLKHAFEAGNMK- 207 (256)
T ss_pred HEEEcCCCCEEEeeccceeecCcchhh--hhhccCCccccCHHHhCCCCCCCccchhHHHHHHHHHHcCCCCccCCCHH-
Confidence 455555555678899888776543221 12235788999999999999999999999999999999999998743221
Q ss_pred hhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 724 KIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 724 ~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
+.+..... +.. +.. +......+.+++.+|++.+|++||+|.+|++
T Consensus 208 -----~~~~~~~~-~~~-----~~~---~~~~~~~~~~li~~~l~~~p~~Rp~~~~vl~ 252 (256)
T cd08218 208 -----NLVLKIIR-GSY-----PPV---SSHYSYDLRNLVSQLFKRNPRDRPSVNSILE 252 (256)
T ss_pred -----HHHHHHhc-CCC-----CCC---cccCCHHHHHHHHHHhhCChhhCcCHHHHhh
Confidence 22222211 111 111 1112234556677999999999999999986
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 1 (Nek1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek1 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek1 is associated with centrosomes throughout the cell cycle. It is involved in the formation of primary cilium and in the maintenance of centrosomes. It cycles through the nucleus and may be capable of relaying signals between the cilium and the nucleus. Nek1 is implicated in the development of polycysti |
| >cd07868 STKc_CDK8 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 8 | Back alignment and domain information |
|---|
Probab=99.13 E-value=3.7e-11 Score=131.33 Aligned_cols=69 Identities=16% Similarity=0.207 Sum_probs=54.2
Q ss_pred HHHHHhcCCccccccCCCCce-eEEEeecCCCCccCceeeec-CCCCchhHHHHHHHHHHHHHhcCCCCCC
Q 038019 650 ELRSATKDFNRSNKLGEGGYG-PVYKVTANSYGYLAPEYAMR-GHLTEKADVFSFGVVALEIISGRASSDK 718 (866)
Q Consensus 650 ~~~~~~~dF~~~~~lg~g~~g-~vy~~~~gt~gY~aPE~~~~-~~~t~ksDVySfGvvLlEl~tg~~p~~~ 718 (866)
....++.|||.++.+...... .......||..|+|||++.+ ..++.++||||+||+++||+||+.|+..
T Consensus 148 ~~~~kl~DfG~a~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~~f~~ 218 (317)
T cd07868 148 RGRVKIADMGFARLFNSPLKPLADLDPVVVTFWYRAPELLLGARHYTKAIDIWAIGCIFAELLTSEPIFHC 218 (317)
T ss_pred cCcEEEeecCceeccCCCCccccccCCccccccccCCHHHcCCCCcCchhhHHHHHHHHHHHHhCCCCccC
Confidence 345788999999887643211 12234578999999999876 4689999999999999999999999864
|
Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK8 can act as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the multi-subunit core Mediator complex, a cofactor that is involved in regulating RNA p |
| >cd07861 STKc_CDK1_euk Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 1 from higher eukaryotes-like | Back alignment and domain information |
|---|
Probab=99.13 E-value=3.1e-11 Score=129.68 Aligned_cols=135 Identities=14% Similarity=0.120 Sum_probs=82.6
Q ss_pred cccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeec-CCCCchhHHHHHHHHHHHHHhcCCCCCCCchh
Q 038019 644 NIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMR-GHLTEKADVFSFGVVALEIISGRASSDKSLDM 722 (866)
Q Consensus 644 ~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~-~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~~ 722 (866)
|++...+...++.|||.++.++... .++....++..|+|||+..+ ..++.++|||||||+++||+||+.|+......
T Consensus 131 nil~~~~~~~~l~dfg~~~~~~~~~--~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~~l~tg~~~~~~~~~~ 208 (285)
T cd07861 131 NLLIDNKGVIKLADFGLARAFGIPV--RVYTHEVVTLWYRAPEVLLGSPRYSTPVDIWSIGTIFAEMATKKPLFHGDSEI 208 (285)
T ss_pred HEEEcCCCcEEECcccceeecCCCc--ccccCCcccccccChHHhcCCCCcCcHHHHHHHHHHHHHHHHCCCCCCCCCHH
Confidence 5666666677899999888765431 33444567899999998765 45789999999999999999999998754321
Q ss_pred hhhcHHHHHHHHhh--cC-------------CcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 723 EKIYLLEWAWNLHE--NN-------------QSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 723 ~~~~l~~~~~~~~~--~~-------------~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
.. +......... +. .......+.+.........++.+++.+|++.||++|||+.+|+.
T Consensus 209 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~Rpt~~~ll~ 281 (285)
T cd07861 209 DQ--LFRIFRILGTPTEDVWPGVTSLPDYKNTFPKWKKGSLRSAVKNLDEDGLDLLEKMLIYDPAKRISAKKALN 281 (285)
T ss_pred HH--HHHHHHHhCCCChhhhhcchhhHHHHhhccccCcchhHHhcCCCCHHHHHHHHHHhcCChhhCCCHHHHhc
Confidence 11 1110000000 00 00000000000000001123456777999999999999999874
|
Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2 |
| >cd07840 STKc_CDK9_like Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.13 E-value=5e-11 Score=128.01 Aligned_cols=135 Identities=19% Similarity=0.228 Sum_probs=86.3
Q ss_pred cccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeec-CCCCchhHHHHHHHHHHHHHhcCCCCCCCchh
Q 038019 644 NIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMR-GHLTEKADVFSFGVVALEIISGRASSDKSLDM 722 (866)
Q Consensus 644 ~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~-~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~~ 722 (866)
|++..++...++.|||.+..+.... ...+....++..|+|||...+ ..++.++||||||++++||+||+.|++.....
T Consensus 130 nil~~~~~~~~l~d~g~~~~~~~~~-~~~~~~~~~~~~y~~PE~~~~~~~~~~~~Dv~slG~~l~el~t~~~p~~~~~~~ 208 (287)
T cd07840 130 NILINNDGVLKLADFGLARPYTKRN-SADYTNRVITLWYRPPELLLGATRYGPEVDMWSVGCILAELFLGKPIFQGSTEL 208 (287)
T ss_pred HeEEcCCCCEEEccccceeeccCCC-cccccccccccccCCceeeEccccCChHHHHHHHHHHHHHHHhCCCCCCCCChH
Confidence 5666666777889999888776543 122344567889999997764 46899999999999999999999998754432
Q ss_pred hhhcHHHHHHHHhhc---CCccc--------ccCCc------ccccCHH-HHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 723 EKIYLLEWAWNLHEN---NQSFG--------LVDPT------LTEFNDK-EALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 723 ~~~~l~~~~~~~~~~---~~~~~--------~~d~~------l~~~~~~-~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
.. ...+...... ..... ...+. +.+.... +...+++++..|++.+|++||++++|++
T Consensus 209 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~P~~Rp~~~~~l~ 283 (287)
T cd07840 209 EQ---LEKIFELCGSPTDENWPGVSKLPWFENLKPKKPYKRRLREFFKHLIDPSALDLLDKLLTLDPKKRISADQALQ 283 (287)
T ss_pred HH---HHHHHHHhCCCchhhccccccchhhhhccccccchhHHHHHhcccCCHHHHHHHHHHcCCChhhCcCHHHHhh
Confidence 21 1111111100 00000 00000 0000001 1446778888999999999999999875
|
Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK9 and CDK12 from higher eukaryotes, yeast BUR1, C-type plant CDKs (CdkC), and similar proteins. CDK9, BUR1, and CdkC are functionally equivalent. They act as a kinase for the C-terminal domain of RNA po |
| >cd05589 STKc_PKN Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase N | Back alignment and domain information |
|---|
Probab=99.13 E-value=3.9e-11 Score=131.62 Aligned_cols=118 Identities=18% Similarity=0.171 Sum_probs=79.2
Q ss_pred CcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCCchh
Q 038019 643 PNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSLDM 722 (866)
Q Consensus 643 ~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~~ 722 (866)
.|++...+...++.|||.++..... +.......||..|||||++.+..++.++|||||||+++||++|+.|+......
T Consensus 130 ~Nill~~~~~~kL~Dfg~~~~~~~~--~~~~~~~~g~~~y~aPE~~~~~~~~~~~DiwslG~il~el~~G~~pf~~~~~~ 207 (324)
T cd05589 130 DNLLLDTEGFVKIADFGLCKEGMGF--GDRTSTFCGTPEFLAPEVLTETSYTRAVDWWGLGVLIYEMLVGESPFPGDDEE 207 (324)
T ss_pred HHeEECCCCcEEeCcccCCccCCCC--CCcccccccCccccCHhHhcCCCCCcccchhhHHHHHHHHHhCCCCCCCCCHH
Confidence 3666666667889999987643221 12223456899999999999999999999999999999999999998754322
Q ss_pred hhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHH
Q 038019 723 EKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMS 778 (866)
Q Consensus 723 ~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~ 778 (866)
+ +. .... .+. +...... ...+.++..+|++.||++||++.
T Consensus 208 ~---~~---~~i~-~~~------~~~p~~~---~~~~~~li~~~L~~dP~~R~~~~ 247 (324)
T cd05589 208 E---VF---DSIV-NDE------VRYPRFL---SREAISIMRRLLRRNPERRLGSG 247 (324)
T ss_pred H---HH---HHHH-hCC------CCCCCCC---CHHHHHHHHHHhhcCHhHcCCCC
Confidence 1 11 1111 111 1111111 12345566799999999999643
|
Serine/Threonine Kinases (STKs), Protein Kinase N (PKN) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKN subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKN has a C-terminal catalytic domain that is highly homologous to PKCs. Its unique N-terminal regulatory region contains antiparallel coiled-coil (ACC) domains. In mammals, there are three PKN isoforms from different genes (designated PKN-alpha, beta, and gamma), which show different enzymatic properties, tissue distribution, and varied functions. PKN can be activated by the small GTPase Rho, and by fatty acids such as arachidonic and linoleic acids. It is involved |
| >cd05605 STKc_GRK4_like Catalytic domain of G protein-coupled Receptor Kinase 4-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.13 E-value=3.8e-11 Score=129.13 Aligned_cols=124 Identities=19% Similarity=0.208 Sum_probs=83.5
Q ss_pred cccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCCchhh
Q 038019 644 NIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSLDME 723 (866)
Q Consensus 644 ~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~~~ 723 (866)
|++..+....++.|||.++.+..+. .+.+..|+..|+|||++....++.++|||||||+++|+++|+.|+.......
T Consensus 132 Nil~~~~~~~~l~Dfg~~~~~~~~~---~~~~~~~~~~y~aPE~~~~~~~~~~~Diws~G~~l~el~~g~~pf~~~~~~~ 208 (285)
T cd05605 132 NILLDDYGHIRISDLGLAVEIPEGE---TIRGRVGTVGYMAPEVVKNERYTFSPDWWGLGCLIYEMIEGKSPFRQRKEKV 208 (285)
T ss_pred HEEECCCCCEEEeeCCCceecCCCC---ccccccCCCCccCcHHhcCCCCCccccchhHHHHHHHHHHCCCCCCCCchhh
Confidence 5555555567788999988765432 3445578999999999998999999999999999999999999997533211
Q ss_pred hhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCC-----CHHHHHH
Q 038019 724 KIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRP-----PMSRVVA 782 (866)
Q Consensus 724 ~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RP-----sm~~V~~ 782 (866)
..+.+......+. + .++......+.+++..|++.||++|| ++.++.+
T Consensus 209 ---~~~~~~~~~~~~~------~---~~~~~~~~~~~~li~~~l~~~P~~R~~~~~~~~~~l~~ 260 (285)
T cd05605 209 ---KREEVERRVKEDQ------E---EYSEKFSEAARSICRQLLTKDPGFRLGCRGEGAEEVKA 260 (285)
T ss_pred ---HHHHHHHHhhhcc------c---ccCcccCHHHHHHHHHHccCCHHHhcCCCCCCHHHHhc
Confidence 1111111111110 0 11111223455677799999999999 6667643
|
Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4-like group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. Members of the GRK4-like group include GRK4, GRK5, |
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.13 E-value=7e-11 Score=133.33 Aligned_cols=201 Identities=31% Similarity=0.447 Sum_probs=163.3
Q ss_pred CEEeccCCcCCCCCCccccCCCCCCEeeccCCCCCCCCchhhcCCC-CccEEEeecCCCCCCChhhhhcCcCCCEEEecC
Q 038019 116 MFLSFSHNDFSGPVPRELGNLKELTVLAFGTNNFSGALPPELGNLA-KLEQLYIDSCGAGGEIPSTFAKLRNMQTLWASD 194 (866)
Q Consensus 116 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~-~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~ 194 (866)
..|++..|.+.. ....+..++.++.|++.+|.++ .++.....+. +|+.|++++|.+.. +|..+..+++|+.|++++
T Consensus 96 ~~l~~~~~~~~~-~~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~~-l~~~~~~l~~L~~L~l~~ 172 (394)
T COG4886 96 PSLDLNLNRLRS-NISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIES-LPSPLRNLPNLKNLDLSF 172 (394)
T ss_pred ceeecccccccc-CchhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchhh-hhhhhhccccccccccCC
Confidence 468888888752 3345666789999999999998 6677777775 99999999999874 446689999999999999
Q ss_pred CCCCCCCcccccCCCCCCeEEccCCCCCCCCchhhcCCCCCCEEEccCccCCCCCchhhhcCCCCCceeccCcccccCCC
Q 038019 195 NPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLESLQMSDIYNVSSSLDFVMSLKNLTDLSLRNALITGTIP 274 (866)
Q Consensus 195 N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p 274 (866)
|+++ .+|...+.+++|+.|++++|++. .+|.....+..|+.|.+++|... ..+..+..+.++..|.+.+|++... +
T Consensus 173 N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~~-~ 248 (394)
T COG4886 173 NDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLEDL-P 248 (394)
T ss_pred chhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeeec-c
Confidence 9998 56666668899999999999998 66776667777999999988522 2334567778888888999988743 6
Q ss_pred cccCCCCCcCEEeeecCcCcccCCcccCCCCCCcEEECcCCCCcccCCccc
Q 038019 275 FGIGELQMLQILDLSFNNLTGQIPATLFNIDSLEYLFLGNNSLSGTLPDQK 325 (866)
Q Consensus 275 ~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~~p~~~ 325 (866)
..++.+++|+.|++++|.++.... +..+.+|+.|++++|.++...|...
T Consensus 249 ~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~~~~ 297 (394)
T COG4886 249 ESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNALPLIA 297 (394)
T ss_pred chhccccccceecccccccccccc--ccccCccCEEeccCccccccchhhh
Confidence 678889999999999999985443 8899999999999999997766543
|
|
| >cd05603 STKc_SGK2 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 2 | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.2e-11 Score=133.48 Aligned_cols=118 Identities=14% Similarity=0.087 Sum_probs=79.3
Q ss_pred CcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCCchh
Q 038019 643 PNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSLDM 722 (866)
Q Consensus 643 ~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~~ 722 (866)
.|++...+...++.|||.++...... + ......||+.|+|||.+....++.++|||||||+++||++|+.|+......
T Consensus 125 ~NIll~~~~~~kl~Dfg~~~~~~~~~-~-~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~ 202 (321)
T cd05603 125 ENILLDSQGHVVLTDFGLCKEGVEPE-E-TTSTFCGTPEYLAPEVLRKEPYDRTVDWWCLGAVLYEMLYGLPPFYSRDVS 202 (321)
T ss_pred HHeEECCCCCEEEccCCCCccCCCCC-C-ccccccCCcccCCHHHhcCCCCCCcCcccccchhhhhhhcCCCCCCCCCHH
Confidence 36676666678899999887532211 1 122346899999999999889999999999999999999999998753211
Q ss_pred hhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHH
Q 038019 723 EKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMS 778 (866)
Q Consensus 723 ~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~ 778 (866)
.+.+.+ .. +. ..+.. .....+.++...|++.+|++||+..
T Consensus 203 ---~~~~~i---~~-~~------~~~~~---~~~~~~~~li~~~l~~~p~~R~~~~ 242 (321)
T cd05603 203 ---QMYDNI---LH-KP------LQLPG---GKTVAACDLLVGLLHKDQRRRLGAK 242 (321)
T ss_pred ---HHHHHH---hc-CC------CCCCC---CCCHHHHHHHHHHccCCHhhcCCCC
Confidence 111111 11 10 01111 1123455666799999999999754
|
Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK2 shows a more restricted distribution that SGK1 and is most abundantly expressed in epithelial tissues including kidney, liver, pancreas, and the choroid plexus of the brain. In vitro cellular assays show that SGK2 can stimulate the activity of ion channels, the glutamate transporter EEAT4, and the glutamate receptors, GluR6 and GLUR1. |
| >cd06658 STKc_PAK5 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 5 | Back alignment and domain information |
|---|
Probab=99.13 E-value=3.8e-11 Score=129.61 Aligned_cols=126 Identities=17% Similarity=0.237 Sum_probs=83.6
Q ss_pred CcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCCchh
Q 038019 643 PNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSLDM 722 (866)
Q Consensus 643 ~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~~ 722 (866)
.|++...+...++.|||.+..+.... .......|+..|+|||+.....++.++|||||||+++|+++|+.|+......
T Consensus 147 ~Nill~~~~~~kL~dfg~~~~~~~~~--~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slGvil~el~~g~~p~~~~~~~ 224 (292)
T cd06658 147 DSILLTSDGRIKLSDFGFCAQVSKEV--PKRKSLVGTPYWMAPEVISRLPYGTEVDIWSLGIMVIEMIDGEPPYFNEPPL 224 (292)
T ss_pred HHEEEcCCCCEEEccCcchhhccccc--ccCceeecCccccCHHHHccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHH
Confidence 35666666677889999887664321 1223346889999999998889999999999999999999999998753322
Q ss_pred hhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 038019 723 EKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAM 783 (866)
Q Consensus 723 ~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~ 783 (866)
.. ..-+. ..+.+.+... ......+..+...|++.+|.+|||+.||++.
T Consensus 225 ~~---~~~~~---------~~~~~~~~~~-~~~~~~~~~li~~~l~~~P~~Rpt~~~il~~ 272 (292)
T cd06658 225 QA---MRRIR---------DNLPPRVKDS-HKVSSVLRGFLDLMLVREPSQRATAQELLQH 272 (292)
T ss_pred HH---HHHHH---------hcCCCccccc-cccCHHHHHHHHHHccCChhHCcCHHHHhhC
Confidence 11 11011 1111221110 0011123345558999999999999999864
|
Serine/threonine kinases (STKs), p21-activated kinase (PAK) 5, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK5 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK5 is mainly express |
| >cd05590 STKc_nPKC_eta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C eta | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.8e-11 Score=132.48 Aligned_cols=118 Identities=19% Similarity=0.225 Sum_probs=80.0
Q ss_pred CcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCCchh
Q 038019 643 PNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSLDM 722 (866)
Q Consensus 643 ~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~~ 722 (866)
.|++...+...++.|||.++.....+ .......||++|||||++....++.++|||||||+++||+||+.|+......
T Consensus 125 ~NIli~~~~~~kL~DfG~~~~~~~~~--~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~Pf~~~~~~ 202 (320)
T cd05590 125 DNVLLDHEGHCKLADFGMCKEGIFNG--KTTSTFCGTPDYIAPEILQEMLYGPSVDWWAMGVLLYEMLCGHAPFEAENED 202 (320)
T ss_pred HHeEECCCCcEEEeeCCCCeecCcCC--CcccccccCccccCHHHHcCCCCCCccchhhhHHHHHHHhhCCCCCCCCCHH
Confidence 46676667778899999876542221 1122346899999999999899999999999999999999999999754322
Q ss_pred hhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHH
Q 038019 723 EKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMS 778 (866)
Q Consensus 723 ~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~ 778 (866)
+ +.+.+ ..+. .. ....... .+.++...|++.||++||++.
T Consensus 203 ~---~~~~i----~~~~---~~---~~~~~~~---~~~~li~~~L~~dP~~R~~~~ 242 (320)
T cd05590 203 D---LFEAI----LNDE---VV---YPTWLSQ---DAVDILKAFMTKNPTMRLGSL 242 (320)
T ss_pred H---HHHHH----hcCC---CC---CCCCCCH---HHHHHHHHHcccCHHHCCCCC
Confidence 1 12111 1111 11 1111122 344556699999999999983
|
Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), eta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-eta is predominantly expressed in squamous epithelia, where it plays a crucial role in the signal |
| >cd06621 PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek1-like dual-specificity MAP kinase kinases | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.3e-10 Score=125.22 Aligned_cols=129 Identities=22% Similarity=0.207 Sum_probs=85.7
Q ss_pred cccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCCch--
Q 038019 644 NIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSLD-- 721 (866)
Q Consensus 644 ~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~-- 721 (866)
+++..++...++.|||.+..+...... ...++..|+|||...++.++.++||||+||+++||+||+.|++....
T Consensus 135 nil~~~~~~~~l~dfg~~~~~~~~~~~----~~~~~~~y~~pE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~ 210 (287)
T cd06621 135 NILLTRKGQVKLCDFGVSGELVNSLAG----TFTGTSFYMAPERIQGKPYSITSDVWSLGLTLLEVAQNRFPFPPEGEPP 210 (287)
T ss_pred HEEEecCCeEEEeeccccccccccccc----cccCCccccCHHHhcCCCCCchhhHHHHHHHHHHHHhCCCCCCcccCCC
Confidence 555555566778899988766543221 23578899999999999999999999999999999999999875421
Q ss_pred hhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 722 MEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 722 ~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
.....+..|..... .... +... .........+.++..+|++.+|++||||.||++
T Consensus 211 ~~~~~~~~~~~~~~----~~~~-~~~~-~~~~~~~~~~~~li~~~l~~~p~~Rpt~~eil~ 265 (287)
T cd06621 211 LGPIELLSYIVNMP----NPEL-KDEP-GNGIKWSEEFKDFIKQCLEKDPTRRPTPWDMLE 265 (287)
T ss_pred CChHHHHHHHhcCC----chhh-ccCC-CCCCchHHHHHHHHHHHcCCCcccCCCHHHHHh
Confidence 11122333332210 1011 1000 000112234567778999999999999999986
|
Protein kinases (PKs), MAP kinase kinase(MAPKK) subfamily, fungal Pek1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include |
| >KOG2052 consensus Activin A type IB receptor, serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.13 E-value=4.4e-11 Score=126.56 Aligned_cols=108 Identities=19% Similarity=0.220 Sum_probs=70.6
Q ss_pred cCCCCccCceeeecC----C--CCchhHHHHHHHHHHHHHhc----------CCCCCCCchhhhhcHHHHHHHHhhcCCc
Q 038019 677 ANSYGYLAPEYAMRG----H--LTEKADVFSFGVVALEIISG----------RASSDKSLDMEKIYLLEWAWNLHENNQS 740 (866)
Q Consensus 677 ~gt~gY~aPE~~~~~----~--~t~ksDVySfGvvLlEl~tg----------~~p~~~~~~~~~~~l~~~~~~~~~~~~~ 740 (866)
+||.+|||||++... . --..+||||||.|+||+..+ +.||....+.+- ..- .+++--.
T Consensus 381 VGTKRYMAPEvLdetin~~~Fesyk~ADIYafgLVlWEiarRc~~ggi~eey~~Pyyd~Vp~DP-s~e-----eMrkVVC 454 (513)
T KOG2052|consen 381 VGTKRYMAPEVLDETINMKHFESYKRADIYAFGLVLWEIARRCESGGIVEEYQLPYYDVVPSDP-SFE-----EMRKVVC 454 (513)
T ss_pred cceeeccChHHhhhhcChhhhhhhhHHHHHHHHHHHHHHHHHhhcCCEehhhcCCcccCCCCCC-CHH-----HHhccee
Confidence 799999999988642 1 12468999999999999863 345543222110 000 0010011
Q ss_pred ccccCCcccc--cCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhcCcCC
Q 038019 741 FGLVDPTLTE--FNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLAGDIEV 790 (866)
Q Consensus 741 ~~~~d~~l~~--~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~~~~~~ 790 (866)
.+-+.|.++. ...+.+..+.+++..||..+|..|-|.-.|-+.|.+....
T Consensus 455 v~~~RP~ipnrW~s~~~l~~m~klMkeCW~~Np~aRltALriKKtl~~l~~~ 506 (513)
T KOG2052|consen 455 VQKLRPNIPNRWKSDPALRVMAKLMKECWYANPAARLTALRIKKTLAKLSNS 506 (513)
T ss_pred ecccCCCCCcccccCHHHHHHHHHHHHhhcCCchhhhHHHHHHHHHHHHhcC
Confidence 2334455532 2346777888999999999999999999999888865543
|
|
| >cd06646 STKc_MAP4K5 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 5 | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.6e-11 Score=130.65 Aligned_cols=128 Identities=19% Similarity=0.244 Sum_probs=81.4
Q ss_pred cccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeee---cCCCCchhHHHHHHHHHHHHHhcCCCCCCCc
Q 038019 644 NIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAM---RGHLTEKADVFSFGVVALEIISGRASSDKSL 720 (866)
Q Consensus 644 ~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~---~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~ 720 (866)
|++...+...++.|||.+..+.... ....+..|+..|+|||.+. ...++.++|||||||+++||++|+.|+....
T Consensus 136 nill~~~~~~~l~dfg~~~~~~~~~--~~~~~~~~~~~y~~PE~~~~~~~~~~~~~~Dvws~G~il~el~~g~~p~~~~~ 213 (267)
T cd06646 136 NILLTDNGDVKLADFGVAAKITATI--AKRKSFIGTPYWMAPEVAAVEKNGGYNQLCDIWAVGITAIELAELQPPMFDLH 213 (267)
T ss_pred HEEECCCCCEEECcCccceeecccc--cccCccccCccccCHhHcccccCCCCcchhhHHHHHHHHHHHHhCCCCccccc
Confidence 5555555567788999888765321 1122346889999999874 4568899999999999999999999985432
Q ss_pred hhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHH
Q 038019 721 DMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAML 784 (866)
Q Consensus 721 ~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L 784 (866)
+.+.. .. .... ....+.... .......+.+++.+|++.+|++||++++|++.|
T Consensus 214 ~~~~~--~~-----~~~~---~~~~~~~~~-~~~~~~~~~~li~~~l~~~P~~Rp~~~~il~~l 266 (267)
T cd06646 214 PMRAL--FL-----MSKS---NFQPPKLKD-KTKWSSTFHNFVKISLTKNPKKRPTAERLLTHL 266 (267)
T ss_pred hhhhh--ee-----eecC---CCCCCCCcc-ccccCHHHHHHHHHHhhCChhhCcCHHHHhcCC
Confidence 21110 00 0000 011111111 011123455667799999999999999998643
|
Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 5 (MAPKKKK5 or MAP4K5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated |
| >cd05587 STKc_cPKC Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C | Back alignment and domain information |
|---|
Probab=99.13 E-value=4.4e-11 Score=131.22 Aligned_cols=117 Identities=19% Similarity=0.218 Sum_probs=80.0
Q ss_pred CcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCCchh
Q 038019 643 PNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSLDM 722 (866)
Q Consensus 643 ~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~~ 722 (866)
.|++...+...++.|||.++...... .......||.+|+|||++.+..++.++|||||||+++||+||+.|+......
T Consensus 130 ~Nill~~~~~~kL~Dfg~~~~~~~~~--~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~elltG~~pf~~~~~~ 207 (324)
T cd05587 130 DNVMLDAEGHIKIADFGMCKENIFGG--KTTRTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQPPFDGEDED 207 (324)
T ss_pred HHeEEcCCCCEEEeecCcceecCCCC--CceeeecCCccccChhhhcCCCCCcccchhhhHHHHHHHHhCCCCCCCCCHH
Confidence 36666666677889999876432211 2234557999999999999999999999999999999999999999754322
Q ss_pred hhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCH
Q 038019 723 EKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPM 777 (866)
Q Consensus 723 ~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm 777 (866)
+ +...+. ... +.+..... ..+.++..+|++.+|.+|++.
T Consensus 208 ~---~~~~i~----~~~------~~~~~~~~---~~~~~li~~~l~~~P~~R~~~ 246 (324)
T cd05587 208 E---LFQSIM----EHN------VSYPKSLS---KEAVSICKGLLTKHPAKRLGC 246 (324)
T ss_pred H---HHHHHH----cCC------CCCCCCCC---HHHHHHHHHHhhcCHHHcCCC
Confidence 1 221111 111 11111112 234556669999999999986
|
Serine/Threonine Kinases (STKs), Classical (or Conventional) Protein Kinase C (cPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. cPKCs contain a calcium-binding C2 region in their regulatory |
| >KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.12 E-value=6e-12 Score=129.48 Aligned_cols=245 Identities=21% Similarity=0.264 Sum_probs=111.8
Q ss_pred cCCCCCCCEEEccCCCCCCC----CCccccCCCCcCEEeccCC---cCCCCCCc-------cccCCCCCCEeeccCCCCC
Q 038019 85 LVTLQYLTVLKIDQNFFTGP----LPSFIGNLSRLMFLSFSHN---DFSGPVPR-------ELGNLKELTVLAFGTNNFS 150 (866)
Q Consensus 85 l~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~Ls~N---~l~~~~p~-------~l~~l~~L~~L~Ls~N~l~ 150 (866)
+..+..++.|+|++|.|... +...+.+.++|+..++++- ++...+|+ ++..+++|++||||+|-|.
T Consensus 26 ~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G 105 (382)
T KOG1909|consen 26 LEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFG 105 (382)
T ss_pred hcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccC
Confidence 44445555666666655321 2333445555555555542 11123332 2334456777777777665
Q ss_pred CCCchh----hcCCCCccEEEeecCCCCCCChhhhhcCcCCCEEEecCCCCCCCCcccccCCCCCCeEEccCCCCCCC--
Q 038019 151 GALPPE----LGNLAKLEQLYIDSCGAGGEIPSTFAKLRNMQTLWASDNPFTGKIPDFIGNWTKLKSLRFQGNSFQGP-- 224 (866)
Q Consensus 151 ~~~p~~----l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~-- 224 (866)
-..++. +..+..|++|+|.+|.+...--..++. .|..|. .|+ -.+.-++|+++...+|++...
T Consensus 106 ~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~--al~~l~--~~k-------k~~~~~~Lrv~i~~rNrlen~ga 174 (382)
T KOG1909|consen 106 PKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGR--ALFELA--VNK-------KAASKPKLRVFICGRNRLENGGA 174 (382)
T ss_pred ccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHH--HHHHHH--HHh-------ccCCCcceEEEEeeccccccccH
Confidence 444433 345677777777777765332222221 011111 010 011123344444444444321
Q ss_pred --CchhhcCCCCCCEEEccCccCCCCCc----hhhhcCCCCCceeccCcccccC----CCcccCCCCCcCEEeeecCcCc
Q 038019 225 --IPSSLSKLASLESLQMSDIYNVSSSL----DFVMSLKNLTDLSLRNALITGT----IPFGIGELQMLQILDLSFNNLT 294 (866)
Q Consensus 225 --~p~~~~~l~~L~~L~l~~n~~~~~~~----~~~~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~Ls~N~l~ 294 (866)
+...|...+.|+.+.+..|.+..... ..+..+++|+.|||+.|.++.. +...+..+++|+.|++++|.+.
T Consensus 175 ~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~ 254 (382)
T KOG1909|consen 175 TALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLE 254 (382)
T ss_pred HHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccc
Confidence 11233333444444444444432211 2334455555555555554421 2223444555566666665554
Q ss_pred ccCCccc-----CCCCCCcEEECcCCCCccc------CCcccCCCCCEEEeeCCCCC
Q 038019 295 GQIPATL-----FNIDSLEYLFLGNNSLSGT------LPDQKSENLQKIDLSHNHLS 340 (866)
Q Consensus 295 ~~~p~~l-----~~l~~L~~L~L~~N~l~g~------~p~~~~~~L~~L~Ls~N~l~ 340 (866)
..-...+ ...|+|+.|.+.+|.++-. .+-...+.|..|+|++|.+.
T Consensus 255 ~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 255 NEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred cccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence 3222111 1246666677766666521 00111356777777777773
|
|
| >cd06631 STKc_YSK4 Catalytic domain of the Protein Serine/Threonine Kinase, Yeast Sps1/Ste20-related kinase 4 | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.6e-11 Score=128.74 Aligned_cols=126 Identities=17% Similarity=0.234 Sum_probs=83.2
Q ss_pred cccCHHHHHHHhcCCccccccCCCC----ceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCC
Q 038019 644 NIFGYAELRSATKDFNRSNKLGEGG----YGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKS 719 (866)
Q Consensus 644 ~~~~~~~~~~~~~dF~~~~~lg~g~----~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~ 719 (866)
|++.+++...++.|||.++.+...+ .........|+..|+|||+..+..++.++|||||||+++|++||+.|+...
T Consensus 132 nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~Dv~slG~~~~~l~~g~~p~~~~ 211 (265)
T cd06631 132 NVMLMPNGIIKLIDFGCARRLAWVGLHGTHSNMLKSMHGTPYWMAPEVINESGYGRKSDIWSIGCTVFEMATGKPPLASM 211 (265)
T ss_pred hEEECCCCeEEeccchhhHhhhhccccccccccccccCCCccccChhhhcCCCCcchhhHHHHHHHHHHHHhCCCccccC
Confidence 5566556667788998887664211 112233456899999999999889999999999999999999999998753
Q ss_pred chhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 720 LDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 720 ~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
..... .. .. ... ....+.+..... ..+..+..+|++.+|++||+|.||++
T Consensus 212 ~~~~~--~~----~~-~~~---~~~~~~~~~~~~---~~~~~~i~~~l~~~p~~Rp~~~~~l~ 261 (265)
T cd06631 212 DRLAA--MF----YI-GAH---RGLMPRLPDSFS---AAAIDFVTSCLTRDQHERPSALQLLR 261 (265)
T ss_pred ChHHH--HH----Hh-hhc---cCCCCCCCCCCC---HHHHHHHHHHhcCCcccCCCHHHHhc
Confidence 32111 00 00 000 011122222122 23455666999999999999999864
|
Serine/threonine kinases (STKs), yeast Sps1/Ste20-related kinase 4 (YSK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YSK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. YSK4 is a putative MAPKKK, whose mammalian gene has been isolated. MAPKKKs (MKKKs or MAP3Ks) phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. |
| >cd06659 STKc_PAK6 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 6 | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.5e-11 Score=131.36 Aligned_cols=126 Identities=15% Similarity=0.202 Sum_probs=85.0
Q ss_pred CcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCCchh
Q 038019 643 PNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSLDM 722 (866)
Q Consensus 643 ~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~~ 722 (866)
.|++...+...++.|||.++.+...... .....|+.+|+|||+..+..++.++|||||||+++||++|+.|+......
T Consensus 146 ~Nill~~~~~~kL~dfg~~~~~~~~~~~--~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~ 223 (297)
T cd06659 146 DSILLTLDGRVKLSDFGFCAQISKDVPK--RKSLVGTPYWMAPEVISRTPYGTEVDIWSLGIMVIEMVDGEPPYFSDSPV 223 (297)
T ss_pred HHeEEccCCcEEEeechhHhhccccccc--ccceecCccccCHHHHccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHH
Confidence 4666666667788999988766543221 22346889999999999889999999999999999999999998753322
Q ss_pred hhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 038019 723 EKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAM 783 (866)
Q Consensus 723 ~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~ 783 (866)
+ ...... ... .+.... .......+.++...|++.+|++||++.+|++.
T Consensus 224 ~---~~~~~~----~~~-----~~~~~~-~~~~~~~l~~~i~~~l~~~P~~Rps~~~ll~~ 271 (297)
T cd06659 224 Q---AMKRLR----DSP-----PPKLKN-AHKISPVLRDFLERMLTREPQERATAQELLDH 271 (297)
T ss_pred H---HHHHHh----ccC-----CCCccc-cCCCCHHHHHHHHHHhcCCcccCcCHHHHhhC
Confidence 2 111111 110 011100 00111234456669999999999999999873
|
Serine/threonine kinases (STKs), p21-activated kinase (PAK) 6, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK6 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK6 may play a role i |
| >cd07835 STKc_CDK1_like Catalytic domain of Cyclin-Dependent protein Kinase 1-like Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.4e-11 Score=130.43 Aligned_cols=135 Identities=15% Similarity=0.142 Sum_probs=82.6
Q ss_pred cccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecC-CCCchhHHHHHHHHHHHHHhcCCCCCCCchh
Q 038019 644 NIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRG-HLTEKADVFSFGVVALEIISGRASSDKSLDM 722 (866)
Q Consensus 644 ~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~-~~t~ksDVySfGvvLlEl~tg~~p~~~~~~~ 722 (866)
|++...+...++.|||.++.++... ..+....++..|+|||++.++ .++.++|||||||+++||+||+.|+......
T Consensus 129 nil~~~~~~~~l~df~~~~~~~~~~--~~~~~~~~~~~~~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~ 206 (283)
T cd07835 129 NLLIDREGALKLADFGLARAFGVPV--RTYTHEVVTLWYRAPEILLGSRQYSTPVDIWSIGCIFAEMVNRRPLFPGDSEI 206 (283)
T ss_pred HEEEcCCCcEEEeecccccccCCCc--cccCccccccCCCCCceeecCcccCcHHHHHHHHHHHHHHHhCCCCCCCCCHH
Confidence 5555555667788999887765331 223334568899999988654 5789999999999999999999998654322
Q ss_pred hhhcHHHHHHHHhhcC---------------CcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 723 EKIYLLEWAWNLHENN---------------QSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 723 ~~~~l~~~~~~~~~~~---------------~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
. .+.+......... .......+.+..........+.+++.+|++.+|++||+|+||++
T Consensus 207 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~il~ 279 (283)
T cd07835 207 D--QLFRIFRTLGTPDEDVWPGVTSLPDYKPTFPKWARQDLSKVVPNLDEDGLDLLSKMLVYDPAKRISAKAALQ 279 (283)
T ss_pred H--HHHHHHHHhCCCChHHhhhhhhchhhhhhcccccccchhhhcCCCCHHHHHHHHHHhcCChhhCcCHHHHhc
Confidence 1 1111111100000 00000000110101111134667788999999999999999974
|
Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes, plants, and yeasts, as well as CDK2 and CDK3. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyc |
| >cd08225 STKc_Nek5 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 5 | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.2e-11 Score=128.54 Aligned_cols=122 Identities=19% Similarity=0.264 Sum_probs=82.3
Q ss_pred cccCHHHH-HHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCCchh
Q 038019 644 NIFGYAEL-RSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSLDM 722 (866)
Q Consensus 644 ~~~~~~~~-~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~~ 722 (866)
+++..++. ..++.||+.+..++...- ......|++.|+|||+...+.++.++|||||||+++|+++|+.|+....
T Consensus 131 nil~~~~~~~~~l~d~~~~~~~~~~~~--~~~~~~~~~~~~ape~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~-- 206 (257)
T cd08225 131 NIFLSKNGMVAKLGDFGIARQLNDSME--LAYTCVGTPYYLSPEICQNRPYNNKTDIWSLGCVLYELCTLKHPFEGNN-- 206 (257)
T ss_pred HEEEcCCCCeEEecccccchhccCCcc--cccccCCCccccCHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCCcc--
Confidence 45544432 346789988887764331 2223458899999999988899999999999999999999999986432
Q ss_pred hhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 723 EKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 723 ~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
..+++...... . +++...... ..+.++..+|++.+|++||+|.||++
T Consensus 207 ----~~~~~~~~~~~-~----~~~~~~~~~----~~~~~~i~~~l~~~p~~Rpt~~~ll~ 253 (257)
T cd08225 207 ----LHQLVLKICQG-Y----FAPISPNFS----RDLRSLISQLFKVSPRDRPSITSILK 253 (257)
T ss_pred ----HHHHHHHHhcc-c----CCCCCCCCC----HHHHHHHHHHhccChhhCcCHHHHhh
Confidence 22333332221 1 111111111 23555666999999999999999975
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 5 (Nek5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek5 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. The specific function of Nek5 is unknown. |
| >cd05604 STKc_SGK3 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 3 | Back alignment and domain information |
|---|
Probab=99.12 E-value=3.6e-11 Score=131.95 Aligned_cols=124 Identities=15% Similarity=0.101 Sum_probs=81.9
Q ss_pred CcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCCchh
Q 038019 643 PNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSLDM 722 (866)
Q Consensus 643 ~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~~ 722 (866)
.|++...+...++.|||.++...... .......||..|||||++.++.++.++|||||||+++||++|+.|+......
T Consensus 125 ~NIll~~~~~~kL~DfG~~~~~~~~~--~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~el~~G~~pf~~~~~~ 202 (325)
T cd05604 125 ENILLDSQGHVVLTDFGLCKEGIAQS--DTTTTFCGTPEYLAPEVIRKQPYDNTVDWWCLGAVLYEMLYGLPPFYCRDVA 202 (325)
T ss_pred HHeEECCCCCEEEeecCCcccCCCCC--CCcccccCChhhCCHHHHcCCCCCCcCccccccceehhhhcCCCCCCCCCHH
Confidence 36666666677889999887532211 1112346899999999999999999999999999999999999998753321
Q ss_pred hhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHH
Q 038019 723 EKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAML 784 (866)
Q Consensus 723 ~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L 784 (866)
+ +. ..... +.. .+.|. . ...+.++...|++.+|.+||++++.++.+
T Consensus 203 ~---~~---~~~~~-~~~--~~~~~---~----~~~~~~ll~~ll~~~p~~R~~~~~~~~~i 248 (325)
T cd05604 203 E---MY---DNILH-KPL--VLRPG---A----SLTAWSILEELLEKDRQRRLGAKEDFLEI 248 (325)
T ss_pred H---HH---HHHHc-CCc--cCCCC---C----CHHHHHHHHHHhccCHHhcCCCCCCHHHH
Confidence 1 11 11111 110 11111 1 12344566689999999999987544433
|
Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGK3 is expressed in most tissues and is most abundant in the embryo and adult heart and spleen. It was originally discovered in a screen for antiapoptotic genes. It phosphorylates and inhibits the proapoptotic proteins, Bad and FKHRL1. SGK3 also regulates many transporters, ion channels, |
| >cd07866 STKc_BUR1 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Bypass UAS Requirement 1 and similar proteins | Back alignment and domain information |
|---|
Probab=99.12 E-value=4e-11 Score=130.53 Aligned_cols=139 Identities=17% Similarity=0.124 Sum_probs=84.0
Q ss_pred cccCHHHHHHHhcCCccccccCCCCce---------eEEEeecCCCCccCceeeec-CCCCchhHHHHHHHHHHHHHhcC
Q 038019 644 NIFGYAELRSATKDFNRSNKLGEGGYG---------PVYKVTANSYGYLAPEYAMR-GHLTEKADVFSFGVVALEIISGR 713 (866)
Q Consensus 644 ~~~~~~~~~~~~~dF~~~~~lg~g~~g---------~vy~~~~gt~gY~aPE~~~~-~~~t~ksDVySfGvvLlEl~tg~ 713 (866)
|++..++...++.|||.++........ .-+....++..|+|||+... ..++.++|||||||+++||++|+
T Consensus 145 nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~el~~g~ 224 (311)
T cd07866 145 NILIDNQGILKIADFGLARPYDGPPPNPKGGGGGGTRKYTNLVVTRWYRPPELLLGERRYTTAVDIWGIGCVFAEMFTRR 224 (311)
T ss_pred HEEECCCCCEEECcCccchhccCCCcccccCCcccccccccceeccCcCChHHhhCCCccCchhHhHHHHHHHHHHHhCC
Confidence 566666666778899888766543221 11233467889999998764 45899999999999999999999
Q ss_pred CCCCCCchhhhhcHHHHHHHHhhcC------Ccccc--------cCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHH
Q 038019 714 ASSDKSLDMEKIYLLEWAWNLHENN------QSFGL--------VDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSR 779 (866)
Q Consensus 714 ~p~~~~~~~~~~~l~~~~~~~~~~~------~~~~~--------~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~ 779 (866)
.|+...................... ..... ..+.+.+........+.+++.+|++.+|++|||+.|
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~R~t~~e 304 (311)
T cd07866 225 PILQGKSDIDQLHLIFKLCGTPTEETWPGWRSLPGCEGVHSFTNYPRTLEERFGKLGPEGLDLLSKLLSLDPYKRLTASD 304 (311)
T ss_pred CCCCCCCHHHHHHHHHHHhCCCChhhchhhhhcccccccccCCCCCccHHHHcccCChhHHHHHHHHcccCcccCcCHHH
Confidence 9987544322111111110000000 00000 011110000111245667888999999999999998
Q ss_pred HHH
Q 038019 780 VVA 782 (866)
Q Consensus 780 V~~ 782 (866)
++.
T Consensus 305 ll~ 307 (311)
T cd07866 305 ALE 307 (311)
T ss_pred Hhc
Confidence 864
|
Serine/Threonine Kinases (STKs), Bypass UAS Requirement 1 (BUR1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The BUR1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. BUR1, also called SGV1, is a yeast Cyclin-Dependent protein Kinase (CDK) that is functionally equivalent to mammalian CDK9. It associates with the cyclin BUR2. BUR genes were orginally identified in a genetic |
| >cd07878 STKc_p38beta_MAPK11 Catalytic domain of the Serine/Threonine Kinase, p38beta Mitogen-Activated Protein Kinase | Back alignment and domain information |
|---|
Probab=99.12 E-value=4.8e-11 Score=132.10 Aligned_cols=133 Identities=15% Similarity=0.165 Sum_probs=84.4
Q ss_pred CCCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeec-CCCCchhHHHHHHHHHHHHHhcCCCCCCC
Q 038019 641 SKPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMR-GHLTEKADVFSFGVVALEIISGRASSDKS 719 (866)
Q Consensus 641 ~~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~-~~~t~ksDVySfGvvLlEl~tg~~p~~~~ 719 (866)
...|++..++...++.|||.++.+.... .+..||..|+|||++.+ ..++.++|||||||+++||++|+.|+...
T Consensus 145 kp~Nil~~~~~~~kl~Dfg~~~~~~~~~-----~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~ 219 (343)
T cd07878 145 KPSNVAVNEDCELRILDFGLARQADDEM-----TGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLKGKALFPGN 219 (343)
T ss_pred ChhhEEECCCCCEEEcCCccceecCCCc-----CCccccccccCchHhcCCccCCchhhhHhHHHHHHHHHHCCCCCCCC
Confidence 3346777777778899999988775432 23358999999999876 57899999999999999999999998653
Q ss_pred chhhhhcHHHHHHHHhhc-----------CCcccccCCcccccCHH--------HHHHHHHHHHHccCCCCCCCCCHHHH
Q 038019 720 LDMEKIYLLEWAWNLHEN-----------NQSFGLVDPTLTEFNDK--------EALRVIGVALLCTQTSPMMRPPMSRV 780 (866)
Q Consensus 720 ~~~~~~~l~~~~~~~~~~-----------~~~~~~~d~~l~~~~~~--------~~~~~~~la~~C~~~~p~~RPsm~~V 780 (866)
...+. +..+ ...... ......+ ..+...+.. ....+.++...|++.||++|||+.|+
T Consensus 220 ~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~li~~mL~~dp~~R~s~~el 295 (343)
T cd07878 220 DYIDQ--LKRI-MEVVGTPSPEVLKKISSEHARKYI-QSLPHMPQQDLKKIFRGANPLAIDLLEKMLVLDSDKRISASEA 295 (343)
T ss_pred CHHHH--HHHH-HHHhCCCCHHHHHhcchhhHHHHh-hccccccchhHHHhccCCCHHHHHHHHHHcCCChhhCCCHHHH
Confidence 32111 1111 100000 0000000 000000000 11235567789999999999999998
Q ss_pred HH
Q 038019 781 VA 782 (866)
Q Consensus 781 ~~ 782 (866)
++
T Consensus 296 l~ 297 (343)
T cd07878 296 LA 297 (343)
T ss_pred hc
Confidence 74
|
Serine/Threonine Kinases (STKs), p38beta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38beta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38beta, also called MAPK11, is |
| >cd06648 STKc_PAK_II Catalytic domain of the Protein Serine/Threonine Kinase, Group II p21-activated kinase | Back alignment and domain information |
|---|
Probab=99.12 E-value=4.8e-11 Score=128.39 Aligned_cols=125 Identities=18% Similarity=0.253 Sum_probs=84.2
Q ss_pred CcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCCchh
Q 038019 643 PNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSLDM 722 (866)
Q Consensus 643 ~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~~ 722 (866)
.|++...+...++.|||.+..+.... .......|+..|+|||+..+..++.++|||||||+++||++|+.|+.....
T Consensus 144 ~Nil~~~~~~~~l~d~g~~~~~~~~~--~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slGv~l~ell~g~~p~~~~~~- 220 (285)
T cd06648 144 DSILLTSDGRVKLSDFGFCAQVSKEV--PRRKSLVGTPYWMAPEVISRLPYGTEVDIWSLGIMVIEMVDGEPPYFNEPP- 220 (285)
T ss_pred hhEEEcCCCcEEEcccccchhhccCC--cccccccCCccccCHHHhcCCCCCCcccHHHHHHHHHHHHhCCCCCcCCCH-
Confidence 35666555667788998877665432 122334688999999999888899999999999999999999999864322
Q ss_pred hhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 723 EKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 723 ~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
..+...... + ..+.+.. .......+.+++.+|++.+|++||++.++++
T Consensus 221 -----~~~~~~~~~-~-----~~~~~~~-~~~~~~~l~~li~~~l~~~p~~Rpt~~~il~ 268 (285)
T cd06648 221 -----LQAMKRIRD-N-----LPPKLKN-LHKVSPRLRSFLDRMLVRDPAQRATAAELLN 268 (285)
T ss_pred -----HHHHHHHHh-c-----CCCCCcc-cccCCHHHHHHHHHHcccChhhCcCHHHHcc
Confidence 112221111 1 1111111 1111234666777999999999999999875
|
Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group II, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group II PAKs, also called non-conventional PAKs, include PAK4, PAK5, and PAK6. Group II PAKs contain PBD (p21-binding domain) and catalytic domains, but lack other motifs foun |
| >cd07852 STKc_MAPK15 Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase 15 | Back alignment and domain information |
|---|
Probab=99.12 E-value=3.2e-11 Score=133.11 Aligned_cols=141 Identities=18% Similarity=0.177 Sum_probs=87.1
Q ss_pred CcccCHHHHHHHhcCCccccccCCCCce---eEEEeecCCCCccCceeeec-CCCCchhHHHHHHHHHHHHHhcCCCCCC
Q 038019 643 PNIFGYAELRSATKDFNRSNKLGEGGYG---PVYKVTANSYGYLAPEYAMR-GHLTEKADVFSFGVVALEIISGRASSDK 718 (866)
Q Consensus 643 ~~~~~~~~~~~~~~dF~~~~~lg~g~~g---~vy~~~~gt~gY~aPE~~~~-~~~t~ksDVySfGvvLlEl~tg~~p~~~ 718 (866)
.|++...+...++.|||.+..+...... .......||..|+|||++.. ..++.++|||||||+++||+||+.|+..
T Consensus 136 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~sDi~slG~~l~el~tg~~pf~~ 215 (337)
T cd07852 136 SNILLNSDCRVKLADFGLARSLSELEENPENPVLTDYVATRWYRAPEILLGSTRYTKGVDMWSVGCILGEMLLGKPLFPG 215 (337)
T ss_pred HHEEEcCCCcEEEeeccchhccccccccccCcchhcccccccccCceeeeccccccccchHHHHHHHHHHHHhCCCCCCC
Confidence 4677777778889999988877544321 12223458899999998764 5688999999999999999999999865
Q ss_pred CchhhhhcHHHHHH--------HHhhcCCcccccC----Cc---ccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 038019 719 SLDMEKIYLLEWAW--------NLHENNQSFGLVD----PT---LTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAM 783 (866)
Q Consensus 719 ~~~~~~~~l~~~~~--------~~~~~~~~~~~~d----~~---l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~ 783 (866)
....+...-..+.. ..+......++++ +. +..........+.+++..|++.+|++||++.++++.
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~P~~Rps~~~il~~ 295 (337)
T cd07852 216 TSTLNQLEKIIEVIGPPSAEDIESIKSPFAATMLDSLPSRPRKPLDELLPKASDDALDLLKKLLVFNPNKRLTAEEALEH 295 (337)
T ss_pred CChHHHHHHHHHHhCCCCHHHHHHHHhhhHHHhhhhcccccccchhhhccCCCHHHHHHHHHhccCCcccccCHHHHhhC
Confidence 43222111100000 0000000000110 00 001111123456778889999999999999999863
|
Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 15 (MAPK15) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK15 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. Human MAPK15 is also called Extracellular signal Regulated Kinase 8 (ERK8) while the rat protein is called ERK7. ERK7 and ERK8 display both similar and different biochemical properties. They autophosphorylate and activate themselves and do not require upstream activating kinases. ERK7 is constitutively active and is not affected by extracellular stimul |
| >PTZ00263 protein kinase A catalytic subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.8e-11 Score=133.09 Aligned_cols=118 Identities=18% Similarity=0.187 Sum_probs=82.5
Q ss_pred CcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCCchh
Q 038019 643 PNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSLDM 722 (866)
Q Consensus 643 ~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~~ 722 (866)
.|++...+...++.|||.++.+....+ ...||+.|+|||++....++.++|||||||+++||+||+.|+......
T Consensus 147 ~NIll~~~~~~kl~Dfg~~~~~~~~~~-----~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~~~ 221 (329)
T PTZ00263 147 ENLLLDNKGHVKVTDFGFAKKVPDRTF-----TLCGTPEYLAPEVIQSKGHGKAVDWWTMGVLLYEFIAGYPPFFDDTPF 221 (329)
T ss_pred HHEEECCCCCEEEeeccCceEcCCCcc-----eecCChhhcCHHHHcCCCCCCcceeechHHHHHHHHcCCCCCCCCCHH
Confidence 367776777788999999988765432 236899999999999999999999999999999999999998753321
Q ss_pred hhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCC-----HHHHH
Q 038019 723 EKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPP-----MSRVV 781 (866)
Q Consensus 723 ~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPs-----m~~V~ 781 (866)
+ .. ....++.. .+...... ++.++...|++.||.+||+ +.+++
T Consensus 222 ~---~~----~~i~~~~~------~~p~~~~~---~~~~li~~~L~~dP~~R~~~~~~~~~~ll 269 (329)
T PTZ00263 222 R---IY----EKILAGRL------KFPNWFDG---RARDLVKGLLQTDHTKRLGTLKGGVADVK 269 (329)
T ss_pred H---HH----HHHhcCCc------CCCCCCCH---HHHHHHHHHhhcCHHHcCCCCCCCHHHHh
Confidence 1 11 11112211 11111122 3345666999999999997 45554
|
|
| >cd05610 STKc_MASTL Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine-like kinase | Back alignment and domain information |
|---|
Probab=99.11 E-value=3e-11 Score=144.75 Aligned_cols=118 Identities=14% Similarity=0.168 Sum_probs=82.6
Q ss_pred HHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCCchhhhhcHHHHHH
Q 038019 653 SATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSLDMEKIYLLEWAW 732 (866)
Q Consensus 653 ~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~~~~~~l~~~~~ 732 (866)
....+|+.++.+..|.........+||..|||||++.+..++.++|||||||+||||+||+.||......+ +..
T Consensus 517 ~~~~~~~~~~~~~~g~~~~~~~~~vGT~~Y~APE~l~~~~~~~~~DiwSlG~il~ElltG~~pf~~~~~~~------~~~ 590 (669)
T cd05610 517 KIGTPYRTPKSVRRGAAPVEGERILGTPDYLAPELLLGKPHGPAVDWWALGVCLFEFLTGIPPFNDETPQQ------VFQ 590 (669)
T ss_pred cccccCCCchhhhcccccccCCceeeCccccCHHHcCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCCHHH------HHH
Confidence 36678888888776665455555689999999999999899999999999999999999999987543221 122
Q ss_pred HHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 038019 733 NLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAM 783 (866)
Q Consensus 733 ~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~ 783 (866)
..... .+..|... ......+.++...|++.+|++||+|.||++.
T Consensus 591 ~il~~----~~~~p~~~---~~~~~~~~~~l~~lL~~dP~~R~ta~e~l~h 634 (669)
T cd05610 591 NILNR----DIPWPEGE---EKLSVNAQNAIEILLTMDPTKRAGLKELKQH 634 (669)
T ss_pred HHHhc----CCCCCccc---ccCCHHHHHHHHHHcccChhHCcCHHHHHhC
Confidence 21111 01111111 1112234556668999999999999999864
|
Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST-like (MASTL) kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. The MASTL kinases in this group carry only a catalytic domain, which contains a long insertion relative to MAST kinases. The human MASTL gene has also been labelled FLJ14813. A missense mutation in FLJ1481 |
| >cd05118 STKc_CMGC Catalytic domain of CMGC family Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.7e-11 Score=129.87 Aligned_cols=134 Identities=16% Similarity=0.156 Sum_probs=86.9
Q ss_pred cccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecC-CCCchhHHHHHHHHHHHHHhcCCCCCCCchh
Q 038019 644 NIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRG-HLTEKADVFSFGVVALEIISGRASSDKSLDM 722 (866)
Q Consensus 644 ~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~-~~t~ksDVySfGvvLlEl~tg~~p~~~~~~~ 722 (866)
|++...+...++.|||.+..++... ..+....++..|+|||..... ..+.++||||||++++||+||+.|+......
T Consensus 128 nili~~~~~~~l~df~~~~~~~~~~--~~~~~~~~~~~~~~PE~~~~~~~~~~~~Di~slG~~l~~l~tg~~~~~~~~~~ 205 (283)
T cd05118 128 NLLINTEGVLKLADFGLARSFGSPV--RPYTHYVVTRWYRAPELLLGDKGYSTPVDIWSVGCIFAELLSRRPLFPGKSEI 205 (283)
T ss_pred HEEECCCCcEEEeeeeeeEecCCCc--ccccCccCcccccCcHHHhcCCCCCchhHHHHHHHHHHHHHhCCCCCCCCCHH
Confidence 5666666667789999888776543 234445688899999998776 7899999999999999999999988654332
Q ss_pred hhhcHHHHHHHHhhcC---Ccccc--------------cCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 723 EKIYLLEWAWNLHENN---QSFGL--------------VDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 723 ~~~~l~~~~~~~~~~~---~~~~~--------------~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
+. ........... ..... .+............++.+++..|++.+|.+||+|.+++.
T Consensus 206 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~P~~Rp~~~~ll~ 279 (283)
T cd05118 206 DQ---LFKIFRTLGTPDPEVWPKFTSLARNYKFSFPKKAGMPLPKLFPNASPQALDLLSQMLHYDPHKRITAEQALA 279 (283)
T ss_pred HH---HHHHHHHcCCCchHhcccchhhhhhhhhhhccccccCHHHhhhhhCHHHHHHHHHHhccCcccCcCHHHHhh
Confidence 21 11111110000 00000 000000111122345667888999999999999999975
|
Serine/Threonine Kinases (STKs), CMGC family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CMGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The CMGC family consists of Cyclin-Dependent protein Kinases (CDKs), Mitogen-activated protein kinases (MAPKs) such as Extracellular signal-regulated kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38, and similar proteins. CDKs belong to a large subfamily of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. MAPKs serve as important mediators of cellular responses to extracellular signals. They |
| >cd06616 PKc_MKK4 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 4 | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.9e-11 Score=130.17 Aligned_cols=125 Identities=19% Similarity=0.195 Sum_probs=82.7
Q ss_pred cccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecC---CCCchhHHHHHHHHHHHHHhcCCCCCCCc
Q 038019 644 NIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRG---HLTEKADVFSFGVVALEIISGRASSDKSL 720 (866)
Q Consensus 644 ~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~---~~t~ksDVySfGvvLlEl~tg~~p~~~~~ 720 (866)
|++...+...++.|||.++.+..... .....|+..|+|||++... .++.++|||||||+++||++|+.|+....
T Consensus 138 Nil~~~~~~~kl~dfg~~~~~~~~~~---~~~~~~~~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~ 214 (288)
T cd06616 138 NILLDRNGNIKLCDFGISGQLVDSIA---KTRDAGCRPYMAPERIDPSARDGYDVRSDVWSLGITLYEVATGKFPYPKWN 214 (288)
T ss_pred HEEEccCCcEEEeecchhHHhccCCc---cccccCccCccCHHHhccccccCCcchhhhhHHHHHHHHHHhCCCCchhcc
Confidence 55555555677889998876653321 1223578999999998765 68999999999999999999999986432
Q ss_pred hhhhhcHHHHHHHHhhcCCcccccCCccc-ccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 721 DMEKIYLLEWAWNLHENNQSFGLVDPTLT-EFNDKEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 721 ~~~~~~l~~~~~~~~~~~~~~~~~d~~l~-~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
...+-..+... ...|.+. .........+.+++.+|++.+|++||++.+|++
T Consensus 215 -----~~~~~~~~~~~------~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~~i~~ 266 (288)
T cd06616 215 -----SVFDQLTQVVK------GDPPILSNSEEREFSPSFVNFINLCLIKDESKRPKYKELLE 266 (288)
T ss_pred -----hHHHHHhhhcC------CCCCcCCCcCCCccCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence 11111111111 1112221 111112334566777999999999999999875
|
Protein kinases (PKs), MAP kinase kinase 4 (MKK4) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK4 is a dual-specificity PK that phosphorylates and activates |
| >cd05591 STKc_nPKC_epsilon Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C epsilon | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.9e-11 Score=132.50 Aligned_cols=122 Identities=18% Similarity=0.220 Sum_probs=82.2
Q ss_pred CCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCCch
Q 038019 642 KPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSLD 721 (866)
Q Consensus 642 ~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~ 721 (866)
..|++..++...++.|||.++.....+ .......||..|+|||++....++.++|||||||+++||+||+.|+.....
T Consensus 124 p~Nill~~~~~~kL~Dfg~~~~~~~~~--~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~el~tg~~Pf~~~~~ 201 (321)
T cd05591 124 LDNILLDAEGHCKLADFGMCKEGILNG--VTTTTFCGTPDYIAPEILQELEYGPSVDWWALGVLMYEMMAGQPPFEADNE 201 (321)
T ss_pred HHHeEECCCCCEEEeecccceecccCC--ccccccccCccccCHHHHcCCCCCCccceechhHHHHHHhcCCCCCCCCCH
Confidence 346777666677889999876542221 122334689999999999988999999999999999999999999975432
Q ss_pred hhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCC-------CHHHHH
Q 038019 722 MEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRP-------PMSRVV 781 (866)
Q Consensus 722 ~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RP-------sm~~V~ 781 (866)
.+ +.+.+ .. +. ...| ..... .+.++...|++.+|++|| ++.++.
T Consensus 202 ~~---~~~~i---~~-~~---~~~p---~~~~~---~~~~ll~~~L~~dp~~R~~~~~~~~~~~~~~ 252 (321)
T cd05591 202 DD---LFESI---LH-DD---VLYP---VWLSK---EAVSILKAFMTKNPNKRLGCVASQGGEDAIK 252 (321)
T ss_pred HH---HHHHH---Hc-CC---CCCC---CCCCH---HHHHHHHHHhccCHHHcCCCCCCCCCHHHHh
Confidence 21 22211 11 11 1111 11122 344556699999999999 666665
|
Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), epsilon isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-epsilon has been shown to behave as an oncoprotein. Its overexpression contributes to |
| >cd06638 STKc_myosinIIIA Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIA myosin | Back alignment and domain information |
|---|
Probab=99.11 E-value=6.5e-11 Score=127.29 Aligned_cols=125 Identities=21% Similarity=0.242 Sum_probs=81.6
Q ss_pred cccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeee-----cCCCCchhHHHHHHHHHHHHHhcCCCCCC
Q 038019 644 NIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAM-----RGHLTEKADVFSFGVVALEIISGRASSDK 718 (866)
Q Consensus 644 ~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~-----~~~~t~ksDVySfGvvLlEl~tg~~p~~~ 718 (866)
|++...+...++.|||.++.+...... .....|+..|+|||++. ...++.++|||||||+++||+||+.|+..
T Consensus 154 nili~~~~~~kl~dfg~~~~~~~~~~~--~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Dv~slGvi~~el~~g~~p~~~ 231 (286)
T cd06638 154 NILLTTEGGVKLVDFGVSAQLTSTRLR--RNTSVGTPFWMAPEVIACEQQLDSTYDARCDVWSLGITAIELGDGDPPLAD 231 (286)
T ss_pred hEEECCCCCEEEccCCceeecccCCCc--cccccCCCcccChhhhchhhhccccccchhhhhhHHHHHHHHhcCCCCCCC
Confidence 555555555778899988776543221 12346899999999875 34578999999999999999999999875
Q ss_pred CchhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 038019 719 SLDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAM 783 (866)
Q Consensus 719 ~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~ 783 (866)
...... +.. ..........+|. .. ...+..++.+|++.+|++||+|.||++.
T Consensus 232 ~~~~~~--~~~-----~~~~~~~~~~~~~---~~---~~~~~~li~~~l~~~p~~Rps~~ell~~ 283 (286)
T cd06638 232 LHPMRA--LFK-----IPRNPPPTLHQPE---LW---SNEFNDFIRKCLTKDYEKRPTVSDLLQH 283 (286)
T ss_pred CchhHH--Hhh-----ccccCCCcccCCC---Cc---CHHHHHHHHHHccCCcccCCCHHHHhhc
Confidence 332111 110 0011001111111 11 1235567779999999999999999864
|
Serine/threonine kinases (STKs), class IIIA myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. In photoreceptor cells, they may also function as cargo carriers during light-dependent translocation of proteins such as transducin and arrestin. Class IIIA myosin is highly expressed in retina and in inner ear |
| >cd06628 STKc_MAPKKK_Byr2_like Catalytic domain of fungal Byr2-like MAP Kinase Kinase Kinases | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.6e-11 Score=128.94 Aligned_cols=124 Identities=19% Similarity=0.267 Sum_probs=82.3
Q ss_pred cccCHHHHHHHhcCCccccccCCCCcee----EEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCC
Q 038019 644 NIFGYAELRSATKDFNRSNKLGEGGYGP----VYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKS 719 (866)
Q Consensus 644 ~~~~~~~~~~~~~dF~~~~~lg~g~~g~----vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~ 719 (866)
|++...+...++.|||.++.+....... -.....|+..|+|||+...+.++.++|||||||+++||+||+.|+...
T Consensus 136 nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~y~~pe~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~ 215 (267)
T cd06628 136 NILVDNKGGIKISDFGISKKLEANSLSTKTNGARPSLQGSVFWMAPEVVKQTSYTRKADIWSLGCLVVEMLTGKHPFPDC 215 (267)
T ss_pred HEEEcCCCCEEecccCCCcccccccccCCccccccccCCCcCccChhHhccCCCCchhhhHHHHHHHHHHhhCCCCCCCc
Confidence 5555555567788999888775322111 011234788999999999889999999999999999999999998753
Q ss_pred chhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 720 LDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 720 ~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
..... . .... +...+.+..... ..+.++..+|++.+|++||++.||++
T Consensus 216 ~~~~~---~---~~~~------~~~~~~~~~~~~---~~~~~li~~~l~~~p~~Rp~~~~il~ 263 (267)
T cd06628 216 TQLQA---I---FKIG------ENASPEIPSNIS---SEAIDFLEKTFEIDHNKRPTAAELLK 263 (267)
T ss_pred cHHHH---H---HHHh------ccCCCcCCcccC---HHHHHHHHHHccCCchhCcCHHHHhh
Confidence 22111 1 1110 111222221122 33445556999999999999999875
|
Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Byr2-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Schizosaccharomyces pombe Byr2, Saccharomyces cerevisiae and Cryptococcus neoformans Ste11, and related proteins. They contain an N-terminal SAM (sterile alpha-motif) domain, which mediates protein-protein interaction, and a C-terminal catalytic domain. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate |
| >cd05573 STKc_ROCK_NDR_like Catalytic domain of ROCK- and NDR kinase-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.11 E-value=3.9e-11 Score=133.17 Aligned_cols=128 Identities=19% Similarity=0.124 Sum_probs=84.2
Q ss_pred CcccCHHHHHHHhcCCccccccCCCCc---------------------------eeEEEeecCCCCccCceeeecCCCCc
Q 038019 643 PNIFGYAELRSATKDFNRSNKLGEGGY---------------------------GPVYKVTANSYGYLAPEYAMRGHLTE 695 (866)
Q Consensus 643 ~~~~~~~~~~~~~~dF~~~~~lg~g~~---------------------------g~vy~~~~gt~gY~aPE~~~~~~~t~ 695 (866)
.|++...+...++.|||.+..+..... ........||..|+|||++....++.
T Consensus 130 ~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~ 209 (350)
T cd05573 130 DNILIDADGHIKLADFGLCKKMNKAKDREYYLNDSHNLLFRDNVLVRRRDHKQRRVRANSTVGTPDYIAPEVLRGTPYGL 209 (350)
T ss_pred HHeEECCCCCEEeecCCCCccCcccCcccccccccccccccccccccccccccccccccccccCccccCHHHHcCCCCCC
Confidence 467776777778999999887765430 01112346899999999999999999
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCCCchhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCC
Q 038019 696 KADVFSFGVVALEIISGRASSDKSLDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRP 775 (866)
Q Consensus 696 ksDVySfGvvLlEl~tg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RP 775 (866)
++|||||||+++||++|+.|+........ ......-. ....-|..... ..+ +.++...|++ +|++||
T Consensus 210 ~~DiwSlG~il~ell~g~~Pf~~~~~~~~------~~~i~~~~--~~~~~p~~~~~-~~~---~~~li~~ll~-dp~~R~ 276 (350)
T cd05573 210 ECDWWSLGVILYEMLYGFPPFYSDTLQET------YNKIINWK--ESLRFPPDPPV-SPE---AIDLICRLLC-DPEDRL 276 (350)
T ss_pred ceeeEecchhhhhhccCCCCCCCCCHHHH------HHHHhccC--CcccCCCCCCC-CHH---HHHHHHHHcc-ChhhcC
Confidence 99999999999999999999975432211 11111100 00001111111 223 3444557887 999999
Q ss_pred C-HHHHHHH
Q 038019 776 P-MSRVVAM 783 (866)
Q Consensus 776 s-m~~V~~~ 783 (866)
+ +.|+++.
T Consensus 277 ~s~~~ll~h 285 (350)
T cd05573 277 GSFEEIKSH 285 (350)
T ss_pred CCHHHHhcC
Confidence 9 9999763
|
Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) and Nuclear Dbf2-Related (NDR)-like kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK- and NDR-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include ROCK and ROCK-like proteins such as DMPK, MRCK, and CRIK, as well as NDR and NDR-like proteins such as LATS, CBK1 and Sid2p. ROCK and CRIK are effectors of the small GTPase Rho, while MRCK is an effector of the small GTPase Cdc42. NDR and NDR-like kinases contain an N-terminal regulatory (NTR) domain and an insert within the |
| >smart00219 TyrKc Tyrosine kinase, catalytic domain | Back alignment and domain information |
|---|
Probab=99.11 E-value=6.8e-11 Score=124.75 Aligned_cols=127 Identities=26% Similarity=0.332 Sum_probs=87.4
Q ss_pred CCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHh-cCCCCCCCc
Q 038019 642 KPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIIS-GRASSDKSL 720 (866)
Q Consensus 642 ~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~t-g~~p~~~~~ 720 (866)
..|++...+...++.|||.++....+.+...- ...++..|+|||+...+.++.++||||+|++++||++ |+.|+....
T Consensus 131 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~-~~~~~~~y~~Pe~~~~~~~~~~~Di~slG~i~~~l~~~g~~p~~~~~ 209 (258)
T smart00219 131 ARNCLVGENLVVKISDFGLSRDLYDDDYYKKK-GGKLPIRWMAPESLKDGKFTSKSDVWSFGVLLWEIFTLGESPYPGMS 209 (258)
T ss_pred cceEEEccCCeEEEcccCCceecccccccccc-cCCCcccccChHHhccCCCCcchhHHHHHHHHHHHHhCCCCCCCCCC
Confidence 34677776667889999998887765332111 2236789999999988999999999999999999999 788876432
Q ss_pred hhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHH
Q 038019 721 DMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAML 784 (866)
Q Consensus 721 ~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L 784 (866)
. ..+.+.+. .+... .... .....+.+++.+|+..+|++|||+.|++++|
T Consensus 210 ~---~~~~~~~~----~~~~~-----~~~~---~~~~~~~~~i~~~l~~~p~~Rpt~~~ll~~l 258 (258)
T smart00219 210 N---EEVLEYLK----KGYRL-----PKPE---NCPPEIYKLMLQCWAEDPEDRPTFSELVEIL 258 (258)
T ss_pred H---HHHHHHHh----cCCCC-----CCCC---cCCHHHHHHHHHHCcCChhhCcCHHHHHhhC
Confidence 2 12222221 11110 0111 1223456677799999999999999998764
|
Phosphotransferases. Tyrosine-specific kinase subfamily. |
| >cd05612 STKc_PRKX_like Catalytic domain of PRKX-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.7e-11 Score=130.78 Aligned_cols=118 Identities=17% Similarity=0.136 Sum_probs=80.9
Q ss_pred CcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCCchh
Q 038019 643 PNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSLDM 722 (866)
Q Consensus 643 ~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~~ 722 (866)
.|++...+...++.|||.++.+..... ...||..|+|||++.+..++.++|||||||+++||+||+.|+......
T Consensus 130 ~NIli~~~~~~kl~Dfg~~~~~~~~~~-----~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~~l~~g~~pf~~~~~~ 204 (291)
T cd05612 130 ENILLDKEGHIKLTDFGFAKKLRDRTW-----TLCGTPEYLAPEVIQSKGHNKAVDWWALGILIYEMLVGYPPFFDDNPF 204 (291)
T ss_pred HHeEECCCCCEEEEecCcchhccCCcc-----cccCChhhcCHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHH
Confidence 366666666778899999887754332 246899999999999888999999999999999999999998754322
Q ss_pred hhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCC-----HHHHH
Q 038019 723 EKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPP-----MSRVV 781 (866)
Q Consensus 723 ~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPs-----m~~V~ 781 (866)
+ +.+. ...+.. .+...... .+.++...|++.||.+||+ +.|+.
T Consensus 205 ~---~~~~----i~~~~~------~~~~~~~~---~~~~li~~~l~~dp~~R~~~~~~~~~~~l 252 (291)
T cd05612 205 G---IYEK----ILAGKL------EFPRHLDL---YAKDLIKKLLVVDRTRRLGNMKNGADDVK 252 (291)
T ss_pred H---HHHH----HHhCCc------CCCccCCH---HHHHHHHHHcCCCHHHccCCccCCHHHHh
Confidence 1 1111 111111 11111122 3445666999999999995 55554
|
Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, PRKX-like kinases, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include human PRKX (X chromosome-encoded protein kinase), Drosophila DC2, and similar proteins. PRKX is present in many tissues including fetal and adult brain, kidney, and lung. The PRKX gene is located in the Xp22.3 subregion and has a homolog called PRKY on the Y chromosome. An abnormal interchange between PRKX aand PRKY leads to the sex reversal disorder of XX males and XY females. PRKX is implicated in granulocyt |
| >cd06610 STKc_OSR1_SPAK Catalytic domain of the Protein Serine/Threonine Kinases, Oxidative stress response kinase and Ste20-related proline alanine-rich kinase | Back alignment and domain information |
|---|
Probab=99.11 E-value=3.1e-11 Score=128.19 Aligned_cols=127 Identities=28% Similarity=0.344 Sum_probs=84.4
Q ss_pred cccCHHHHHHHhcCCccccccCCCCcee--EEEeecCCCCccCceeeecC-CCCchhHHHHHHHHHHHHHhcCCCCCCCc
Q 038019 644 NIFGYAELRSATKDFNRSNKLGEGGYGP--VYKVTANSYGYLAPEYAMRG-HLTEKADVFSFGVVALEIISGRASSDKSL 720 (866)
Q Consensus 644 ~~~~~~~~~~~~~dF~~~~~lg~g~~g~--vy~~~~gt~gY~aPE~~~~~-~~t~ksDVySfGvvLlEl~tg~~p~~~~~ 720 (866)
+++..++...++.|||.+..+....... ......|+.+|+|||++..+ ..+.++|||||||+++||++|+.|+....
T Consensus 132 ni~~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~y~~Pe~~~~~~~~~~~~Dv~slG~i~~~l~~g~~p~~~~~ 211 (267)
T cd06610 132 NILLGEDGSVKIADFGVSASLADGGDRTRKVRKTFVGTPCWMAPEVMEQVHGYDFKADIWSFGITAIELATGAAPYSKYP 211 (267)
T ss_pred hEEEcCCCCEEEcccchHHHhccCccccccccccccCChhhcChHHHccccCcCcccchHhHhHHHHHHHhCCCCccccC
Confidence 5555555566788898887776543321 22334688999999998877 78999999999999999999999987543
Q ss_pred hhhhhcHHHHHHHHhhcCCcccccCCcccccC--HHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 721 DMEKIYLLEWAWNLHENNQSFGLVDPTLTEFN--DKEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 721 ~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~--~~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
... .+.++.. . .++.+.... ......+.++...|++.+|++||++.+|++
T Consensus 212 ~~~--~~~~~~~----~------~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~ll~ 263 (267)
T cd06610 212 PMK--VLMLTLQ----N------DPPSLETGADYKKYSKSFRKMISLCLQKDPSKRPTAEELLK 263 (267)
T ss_pred hhh--hHHHHhc----C------CCCCcCCccccccccHHHHHHHHHHcCCChhhCcCHHHHhh
Confidence 221 1111111 1 111111100 112234556777999999999999999875
|
Serine/threonine kinases (STKs), oxidative stress response kinase (OSR1) and Ste20-related proline alanine-rich kinase (SPAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The OSR1 and SPAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SPAK is also referred to as STK39 or PASK (proline-alanine-rich STE20-related kinase). OSR1 and SPAK regulate the activity of cation-chloride cotransporters through direct interaction and phosphorylation. They are also implicated in cytoskeletal rearrangement, cell differentiation, transformation and proliferation. OSR1 |
| >cd06917 STKc_NAK1_like Catalytic domain of Fungal Nak1-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.11 E-value=6.9e-11 Score=126.45 Aligned_cols=123 Identities=17% Similarity=0.180 Sum_probs=82.2
Q ss_pred cccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecC-CCCchhHHHHHHHHHHHHHhcCCCCCCCchh
Q 038019 644 NIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRG-HLTEKADVFSFGVVALEIISGRASSDKSLDM 722 (866)
Q Consensus 644 ~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~-~~t~ksDVySfGvvLlEl~tg~~p~~~~~~~ 722 (866)
|++...+...++.|||.+..+..... ......|+..|+|||+...+ .++.++|||||||+++||++|+.|+......
T Consensus 131 ni~i~~~~~~~l~dfg~~~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~~ll~g~~p~~~~~~~ 208 (277)
T cd06917 131 NILVTNTGNVKLCDFGVAALLNQNSS--KRSTFVGTPYWMAPEVITEGKYYDTKADIWSLGITIYEMATGNPPYSDVDAF 208 (277)
T ss_pred HEEEcCCCCEEEccCCceeecCCCcc--ccccccCCcceeCHHHhccCCccccchhHHHHHHHHHHHHhCCCCCCCCChh
Confidence 55555555677889998877765431 11223688899999998765 4689999999999999999999998753221
Q ss_pred hhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 723 EKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 723 ~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
.+... .. ....+.+... .....+.+++..|++.+|++||++.|+++
T Consensus 209 ------~~~~~-~~-----~~~~~~~~~~--~~~~~~~~~i~~~l~~~p~~R~~~~~il~ 254 (277)
T cd06917 209 ------RAMML-IP-----KSKPPRLEDN--GYSKLLREFVAACLDEEPKERLSAEELLK 254 (277)
T ss_pred ------hhhhc-cc-----cCCCCCCCcc--cCCHHHHHHHHHHcCCCcccCcCHHHHhh
Confidence 11111 00 1111222111 02234556777999999999999999976
|
Serine/threonine kinases (STKs), Nak1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nak1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of Schizosaccharomyces pombe Nak1, Saccharomyces cerevisiae Kic1p (kinase that interacts with Cdc31p) and related proteins. Nak1 (also known as N-rich kinase 1), is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Kic1p is required by budding yeast for cell integrity and morphogenesis. Kic1p interacts with Cdc31p, the yeast homologue of cent |
| >cd07838 STKc_CDK4_6_like Catalytic domain of Cyclin-Dependent protein Kinase 4 and 6-like Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.11 E-value=6e-11 Score=127.50 Aligned_cols=135 Identities=13% Similarity=0.064 Sum_probs=86.3
Q ss_pred CcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCCchh
Q 038019 643 PNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSLDM 722 (866)
Q Consensus 643 ~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~~ 722 (866)
.|++...+...++.|||.+..+..... .....++..|+|||+.....++.|+|||||||+++||+||+.|+......
T Consensus 136 ~nili~~~~~~~l~dfg~~~~~~~~~~---~~~~~~~~~~~~PE~~~~~~~~~~~Di~s~G~~l~~l~~~~~~~~~~~~~ 212 (287)
T cd07838 136 QNILVTSDGQVKIADFGLARIYSFEMA---LTSVVVTLWYRAPEVLLQSSYATPVDMWSVGCIFAELFRRRPLFRGTSEA 212 (287)
T ss_pred hhEEEccCCCEEEeccCcceeccCCcc---cccccccccccChHHhccCCCCCcchhhhHHHHHHHHHhCCCcccCCChH
Confidence 466666677788899998887754421 12234788999999999999999999999999999999999888754322
Q ss_pred hhhcHHHHHHHHhhcCCc---c------cccCCcc----cccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 723 EKIYLLEWAWNLHENNQS---F------GLVDPTL----TEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 723 ~~~~l~~~~~~~~~~~~~---~------~~~d~~l----~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
+ .+..+.......+.. . ....... .....+-...+.+++..|++.+|++||+|.|+++
T Consensus 213 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rp~~~~il~ 283 (287)
T cd07838 213 D--QLDKIFDVIGLPSEEEWPRNVSLPRSSFPSYTPRSFKSFVPEICEEGLDLLKKMLTFNPHKRISAFEALQ 283 (287)
T ss_pred H--HHHHHHHHcCCCChHhcCCCcccchhhcccccccchhhhhhhhhHHHHHHHHHHhccCCccCCCHHHHhc
Confidence 1 111111110000000 0 0000000 0111112245567888999999999999999874
|
Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) and CDK6-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4/6-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 and CDK6 partner with D-type cyclins to regulate the early G1 phase of the cell cycle. They are the first kinase activated by mitogenic signals to release cells from the G0 arrested state. CDK4 and CDK6 are both |
| >cd07865 STKc_CDK9 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 9 | Back alignment and domain information |
|---|
Probab=99.11 E-value=5e-11 Score=129.69 Aligned_cols=139 Identities=12% Similarity=0.067 Sum_probs=84.6
Q ss_pred cccCHHHHHHHhcCCccccccCCCCce--eEEEeecCCCCccCceeeecC-CCCchhHHHHHHHHHHHHHhcCCCCCCCc
Q 038019 644 NIFGYAELRSATKDFNRSNKLGEGGYG--PVYKVTANSYGYLAPEYAMRG-HLTEKADVFSFGVVALEIISGRASSDKSL 720 (866)
Q Consensus 644 ~~~~~~~~~~~~~dF~~~~~lg~g~~g--~vy~~~~gt~gY~aPE~~~~~-~~t~ksDVySfGvvLlEl~tg~~p~~~~~ 720 (866)
|++...+...++.|||.++.+...... ..+.+..++..|+|||+.... .++.++||||||++++||+||+.|+....
T Consensus 149 nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~el~t~~~~~~~~~ 228 (310)
T cd07865 149 NILITKDGILKLADFGLARAFSLSKNSKPNRYTNRVVTLWYRPPELLLGERDYGPPIDMWGAGCIMAEMWTRSPIMQGNT 228 (310)
T ss_pred HEEECCCCcEEECcCCCcccccCCcccCCCCccCcccCccccCcHHhcCCcccCchhhhHHHHHHHHHHHhCCCCCCCCC
Confidence 556666667788999988776532211 222344678899999987654 47899999999999999999999987544
Q ss_pred hhhhhcHHHHHHHHhhcCCcc-----cccCC-ccccc----CH------HHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 721 DMEKIYLLEWAWNLHENNQSF-----GLVDP-TLTEF----ND------KEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 721 ~~~~~~l~~~~~~~~~~~~~~-----~~~d~-~l~~~----~~------~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
..................... +..+. ..... .. .+...+.+++..|++.+|++||++.|+++
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~dli~~~l~~~P~~R~t~~e~l~ 306 (310)
T cd07865 229 EQHQLTLISQLCGSITPEVWPGVDKLELFKKMELPQGQKRKVKERLKPYVKDPHALDLIDKLLVLDPAKRIDADTALN 306 (310)
T ss_pred HHHHHHHHHHHhCCCChhhcccccchhhhhhccCCCccchhhHHhcccccCCHHHHHHHHHHhcCChhhccCHHHHhc
Confidence 333222222221111100000 00000 00000 00 01124457888999999999999999874
|
Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK9 together with a cyclin partner (cyclin T1, T2a, T2b, or K) is the main component of distinct positive transcription elongation factors (P-TEFb), which function as Ser2 C-terminal domain kinases of RNA polymerase II. P-TEFb participates in multipl |
| >cd08220 STKc_Nek8 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 8 | Back alignment and domain information |
|---|
Probab=99.10 E-value=6.1e-11 Score=125.12 Aligned_cols=112 Identities=18% Similarity=0.221 Sum_probs=77.6
Q ss_pred HHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCCchhhhhcHHHHHH
Q 038019 653 SATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSLDMEKIYLLEWAW 732 (866)
Q Consensus 653 ~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~~~~~~l~~~~~ 732 (866)
.++.||+.++.++...... ...|+.+|+|||+.....++.++|||||||+++||++|+.|++..... ..+.++
T Consensus 141 ~~l~d~~~~~~~~~~~~~~---~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~~l~~~~~~~~~~~~~---~~~~~~- 213 (256)
T cd08220 141 VKIGDFGISKILSSKSKAY---TVVGTPCYISPELCEGKPYNQKSDIWALGCVLYELASLKRAFEAANLP---ALVLKI- 213 (256)
T ss_pred EEEccCCCceecCCCcccc---ccccCCcccCchhccCCCCCcccchHHHHHHHHHHHhCCCCcccCchH---HHHHHH-
Confidence 4678999888776543211 235788999999999888999999999999999999999998653321 122211
Q ss_pred HHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 733 NLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 733 ~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
.. +.... +.. .....+.++...|++.+|++||+|.|+++
T Consensus 214 --~~-~~~~~-----~~~---~~~~~l~~li~~~l~~~p~~Rpt~~~ll~ 252 (256)
T cd08220 214 --MS-GTFAP-----ISD---RYSPDLRQLILSMLNLDPSKRPQLSQIMA 252 (256)
T ss_pred --Hh-cCCCC-----CCC---CcCHHHHHHHHHHccCChhhCCCHHHHhh
Confidence 11 11101 111 11234556677999999999999999975
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 8 (Nek8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek8 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek8 contains an N-terminal kinase catalytic domain and a C-terminal RCC1 (regulator of chromosome condensation) domain. A double point mutation in Nek8 causes cystic kidney disease in mice that genetically resembles human autosomal recessive polycystic kidney disease (ARPKD). Nek8 is also associated with |
| >cd07869 STKc_PFTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-1 kinase | Back alignment and domain information |
|---|
Probab=99.10 E-value=7.7e-11 Score=127.98 Aligned_cols=135 Identities=16% Similarity=0.146 Sum_probs=82.6
Q ss_pred cccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeec-CCCCchhHHHHHHHHHHHHHhcCCCCCCCchh
Q 038019 644 NIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMR-GHLTEKADVFSFGVVALEIISGRASSDKSLDM 722 (866)
Q Consensus 644 ~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~-~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~~ 722 (866)
|++..++...++.|||.++...... ..+....||..|+|||.+.+ ..++.++||||+||+++||+||+.|+......
T Consensus 133 Nill~~~~~~kl~Dfg~~~~~~~~~--~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~ 210 (303)
T cd07869 133 NLLISDTGELKLADFGLARAKSVPS--HTYSNEVVTLWYRPPDVLLGSTEYSTCLDMWGVGCIFVEMIQGVAAFPGMKDI 210 (303)
T ss_pred HEEECCCCCEEECCCCcceeccCCC--ccCCCCcccCCCCChHHHcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCccH
Confidence 6666666667889999887654321 22344568999999998764 46899999999999999999999999754321
Q ss_pred hhhcHHHHHHHHhhc---CCcc-----cccCCc-ccccC----HH------HHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 723 EKIYLLEWAWNLHEN---NQSF-----GLVDPT-LTEFN----DK------EALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 723 ~~~~l~~~~~~~~~~---~~~~-----~~~d~~-l~~~~----~~------~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
. ...+.+...... .... ...++. ..... .. ....+.++...|++.||++|||+.|+++
T Consensus 211 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dli~~mL~~dp~~R~s~~~~l~ 287 (303)
T cd07869 211 Q--DQLERIFLVLGTPNEDTWPGVHSLPHFKPERFTLYSPKNLRQAWNKLSYVNHAEDLASKLLQCFPKNRLSAQAALS 287 (303)
T ss_pred H--HHHHHHHHHhCCCChhhccchhhccccccccccccCCccHHHHhhccCCChHHHHHHHHHhccCchhccCHHHHhc
Confidence 1 111111111100 0000 001110 00000 00 0123456677999999999999999874
|
Serine/Threonine Kinases (STKs), PFTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-1 is widely expressed except in the spleen and thymus. It is highly expressed in the brain, heart, pancreas, testis, and ovary, and is localized in the cytoplasm. It is regulated by cyclin D3 an |
| >cd07831 STKc_MOK Catalytic domain of the Serine/Threonine Kinase, MAPK/MAK/MRK Overlapping Kinase | Back alignment and domain information |
|---|
Probab=99.10 E-value=9.6e-11 Score=125.60 Aligned_cols=132 Identities=14% Similarity=0.092 Sum_probs=84.6
Q ss_pred cccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeee-cCCCCchhHHHHHHHHHHHHHhcCCCCCCCchh
Q 038019 644 NIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAM-RGHLTEKADVFSFGVVALEIISGRASSDKSLDM 722 (866)
Q Consensus 644 ~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~-~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~~ 722 (866)
|++... ...++.|||.++.+....-. ....++..|+|||+.. .+.++.++|||||||+++||++|+.|+......
T Consensus 130 ni~l~~-~~~kl~dfg~~~~~~~~~~~---~~~~~~~~y~aPE~~~~~~~~~~~~Di~slGv~l~el~~~~~p~~~~~~~ 205 (282)
T cd07831 130 NILIKD-DILKLADFGSCRGIYSKPPY---TEYISTRWYRAPECLLTDGYYGPKMDIWAVGCVFFEILSLFPLFPGTNEL 205 (282)
T ss_pred HEEEcC-CCeEEEecccccccccCCCc---CCCCCCcccCChhHhhcCCCCCcchhHHHHHHHHHHHHcCCcCCCCCCHH
Confidence 555555 67788999998877543321 2235788999999765 456789999999999999999999998754322
Q ss_pred hhhcHHHHHHHHh-----------hcCCcccccCCccc-----ccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 723 EKIYLLEWAWNLH-----------ENNQSFGLVDPTLT-----EFNDKEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 723 ~~~~l~~~~~~~~-----------~~~~~~~~~d~~l~-----~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
..+.+..... ..........|... .........+.+++..|++.+|++||++.++++
T Consensus 206 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~~~~~~l~ 278 (282)
T cd07831 206 ---DQIAKIHDVLGTPDAEVLKKFRKSRHMNYNFPSKKGTGLRKLLPNASAEGLDLLKKLLAYDPDERITAKQALR 278 (282)
T ss_pred ---HHHHHHHHHcCCCCHHHHHhhcccccccccCcccccccHHHHcccccHHHHHHHHHHhccCcccccCHHHHhh
Confidence 2222222211 11111111111110 001122356677888999999999999999875
|
Serine/Threonine Kinases (STKs), MAPK/MAK/MRK Overlapping Kinase (MOK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MOK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MOK, also called Renal tumor antigen 1 (RAGE-1), is widely expressed and is enriched in testis, kidney, lung, and brain. It is expressed in approximately 50% of renal cell carcinomas (RCC) and is a potential target for immunotherapy. MOK is stabilized by its association with the HSP90 molecular chaperone. It is induced by the transcription factor Cdx2 and may be involved in regulating intestinal epithelial development and differentiation. |
| >cd07842 STKc_CDK8_like Catalytic domain of Cyclin-Dependent protein Kinase 8-like Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.10 E-value=5.1e-11 Score=130.08 Aligned_cols=76 Identities=16% Similarity=0.145 Sum_probs=57.3
Q ss_pred cccCHH----HHHHHhcCCccccccCCCCc-eeEEEeecCCCCccCceeeecC-CCCchhHHHHHHHHHHHHHhcCCCCC
Q 038019 644 NIFGYA----ELRSATKDFNRSNKLGEGGY-GPVYKVTANSYGYLAPEYAMRG-HLTEKADVFSFGVVALEIISGRASSD 717 (866)
Q Consensus 644 ~~~~~~----~~~~~~~dF~~~~~lg~g~~-g~vy~~~~gt~gY~aPE~~~~~-~~t~ksDVySfGvvLlEl~tg~~p~~ 717 (866)
|++... +...++.|||.+..+..... -....+..++..|+|||++.+. .++.++|||||||+++||++|+.|+.
T Consensus 138 Nil~~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~~l~~~~~~~~ 217 (316)
T cd07842 138 NILVMGEGPERGVVKIGDLGLARLFNAPLKPLADLDPVVVTIWYRAPELLLGARHYTKAIDIWAIGCIFAELLTLEPIFK 217 (316)
T ss_pred HEEEcCCCCccceEEECCCccccccCCCcccccccCCccccccccCHHHHhCCCCCCcHHHHHHHHHHHHHHHhcCCCCc
Confidence 555555 66778899999887754321 1112345678999999987654 58999999999999999999999987
Q ss_pred CC
Q 038019 718 KS 719 (866)
Q Consensus 718 ~~ 719 (866)
..
T Consensus 218 ~~ 219 (316)
T cd07842 218 GR 219 (316)
T ss_pred CC
Confidence 54
|
Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK8, CDC2L6, and similar proteins. CDK8 functions as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the |
| >cd05076 PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2 | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.1e-10 Score=124.67 Aligned_cols=110 Identities=22% Similarity=0.260 Sum_probs=73.2
Q ss_pred HHhcCCccccccCCCCceeEEEeecCCCCccCceeeec-CCCCchhHHHHHHHHHHHHH-hcCCCCCCCchhhhhcHHHH
Q 038019 653 SATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMR-GHLTEKADVFSFGVVALEII-SGRASSDKSLDMEKIYLLEW 730 (866)
Q Consensus 653 ~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~-~~~t~ksDVySfGvvLlEl~-tg~~p~~~~~~~~~~~l~~~ 730 (866)
.++.|||.+...... ....++..|+|||++.. ..++.++|||||||++||++ +|+.|+......+ ...+
T Consensus 163 ~kl~d~g~~~~~~~~------~~~~~~~~~~aPe~~~~~~~~~~~~Dv~slG~~l~el~~~g~~p~~~~~~~~---~~~~ 233 (274)
T cd05076 163 IKLSDPGVSFTALSR------EERVERIPWIAPECVPGGNSLSTAADKWSFGTTLLEICFDGEVPLKERTPSE---KERF 233 (274)
T ss_pred eeecCCccccccccc------cccccCCcccCchhhcCCCCCCcHHHHHHHHHHHHHHHhCCCCCccccChHH---HHHH
Confidence 456788766543221 11247788999998875 56899999999999999984 6898886543222 1111
Q ss_pred HHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHh
Q 038019 731 AWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLA 785 (866)
Q Consensus 731 ~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~ 785 (866)
. ... ..+... ....+.+++..||+.+|++||+|.+|++.|.
T Consensus 234 ~----~~~-------~~~~~~---~~~~~~~li~~cl~~~p~~Rps~~~il~~L~ 274 (274)
T cd05076 234 Y----EKK-------HRLPEP---SCKELATLISQCLTYEPTQRPSFRTILRDLT 274 (274)
T ss_pred H----Hhc-------cCCCCC---CChHHHHHHHHHcccChhhCcCHHHHHHhhC
Confidence 1 100 011110 1124666778999999999999999998873
|
Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalyt |
| >cd06608 STKc_myosinIII_like Catalytic domain of Class III myosin-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.10 E-value=6.8e-11 Score=126.08 Aligned_cols=125 Identities=21% Similarity=0.253 Sum_probs=81.9
Q ss_pred CcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeec-----CCCCchhHHHHHHHHHHHHHhcCCCCC
Q 038019 643 PNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMR-----GHLTEKADVFSFGVVALEIISGRASSD 717 (866)
Q Consensus 643 ~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~-----~~~t~ksDVySfGvvLlEl~tg~~p~~ 717 (866)
.|++..++...++.|||.+..+.... .......|+..|+|||++.. ..++.++|||||||+++|++||+.|+.
T Consensus 142 ~ni~~~~~~~~~l~d~~~~~~~~~~~--~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~ 219 (275)
T cd06608 142 QNILLTKNAEVKLVDFGVSAQLDSTL--GRRNTFIGTPYWMAPEVIACDEQPDASYDARSDVWSLGITAIELADGKPPLC 219 (275)
T ss_pred HHEEEccCCeEEECCCccceecccch--hhhcCccccccccCHhHhcccccccCCccccccHHHhHHHHHHHHhCCCCcc
Confidence 36666666667788999887664322 12233458899999998753 357889999999999999999999986
Q ss_pred CCchhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 718 KSLDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 718 ~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
....... +. .. ..+ ..+.+. ........+.++..+|++.||++|||+.||++
T Consensus 220 ~~~~~~~--~~----~~-~~~-----~~~~~~-~~~~~~~~~~~li~~~l~~dp~~Rpt~~~ll~ 271 (275)
T cd06608 220 DMHPMRA--LF----KI-PRN-----PPPTLK-SPENWSKKFNDFISECLIKNYEQRPFMEELLE 271 (275)
T ss_pred ccchHHH--HH----Hh-hcc-----CCCCCC-chhhcCHHHHHHHHHHhhcChhhCcCHHHHhc
Confidence 4322111 11 11 111 111111 11112234556777999999999999999975
|
Serine/threonine kinases (STKs), Class III myosin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins with an N-terminal kinase catalytic domain and a C-terminal actin-binding motor domain. Class III myosins are present in the photoreceptors of invertebrates and vertebrates and in the auditory hair cells of mammals. The kinase domain of myosin III can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, and can autophosphorylate the C-terminal motor domain. Myosin I |
| >PRK13184 pknD serine/threonine-protein kinase; Reviewed | Back alignment and domain information |
|---|
Probab=99.10 E-value=6.8e-11 Score=141.19 Aligned_cols=140 Identities=12% Similarity=0.089 Sum_probs=89.3
Q ss_pred ccCCCCCcccCHHHHHHHhcCCccccccCCCC--c--------eeEE------EeecCCCCccCceeeecCCCCchhHHH
Q 038019 637 VGIGSKPNIFGYAELRSATKDFNRSNKLGEGG--Y--------GPVY------KVTANSYGYLAPEYAMRGHLTEKADVF 700 (866)
Q Consensus 637 ~~~~~~~~~~~~~~~~~~~~dF~~~~~lg~g~--~--------g~vy------~~~~gt~gY~aPE~~~~~~~t~ksDVy 700 (866)
++.....|++...+...++.|||.++.+.... . +..+ ....||++|||||++.+..++.++|||
T Consensus 136 HRDLKPeNILLd~dg~vKLiDFGLAk~i~~~~~~~~~l~~~~~~s~~s~~t~~g~~vGT~~YmAPE~l~g~~~S~kSDIW 215 (932)
T PRK13184 136 HRDLKPDNILLGLFGEVVILDWGAAIFKKLEEEDLLDIDVDERNICYSSMTIPGKIVGTPDYMAPERLLGVPASESTDIY 215 (932)
T ss_pred ccCCchheEEEcCCCCEEEEecCcceecccccccccccccccccccccccccCCCCCCCCCCCCHHHhcCCCCCcHhHHH
Confidence 33333346776666667789999988762110 0 0111 123699999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCCchhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCC-CHHH
Q 038019 701 SFGVVALEIISGRASSDKSLDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRP-PMSR 779 (866)
Q Consensus 701 SfGvvLlEl~tg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RP-sm~~ 779 (866)
||||+++||+||+.|+....... ... . . .+.+|.-.....+....+.+++.+|++.+|++|| ++.+
T Consensus 216 SLGVILyELLTG~~PF~~~~~~k---i~~---~----~---~i~~P~~~~p~~~iP~~L~~LI~rcL~~DP~kR~ss~ee 282 (932)
T PRK13184 216 ALGVILYQMLTLSFPYRRKKGRK---ISY---R----D---VILSPIEVAPYREIPPFLSQIAMKALAVDPAERYSSVQE 282 (932)
T ss_pred HHHHHHHHHHHCCCCCCCcchhh---hhh---h----h---hccChhhccccccCCHHHHHHHHHHccCChhhCcCHHHH
Confidence 99999999999999987532211 110 0 0 0111110000011123455677899999999995 6778
Q ss_pred HHHHHhcCcC
Q 038019 780 VVAMLAGDIE 789 (866)
Q Consensus 780 V~~~L~~~~~ 789 (866)
+.+.|+..+.
T Consensus 283 Ll~~Le~~lq 292 (932)
T PRK13184 283 LKQDLEPHLQ 292 (932)
T ss_pred HHHHHHHHHh
Confidence 8888876544
|
|
| >KOG0986 consensus G protein-coupled receptor kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.10 E-value=3.1e-11 Score=127.64 Aligned_cols=73 Identities=23% Similarity=0.319 Sum_probs=66.3
Q ss_pred CcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCC
Q 038019 643 PNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDK 718 (866)
Q Consensus 643 ~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~ 718 (866)
.||++++.....+.|.|++-.|.+|. --++.+||.||||||++..++|+...|.||+||+|+||+.|+.||..
T Consensus 316 eNILLDd~GhvRISDLGLAvei~~g~---~~~~rvGT~GYMAPEvl~ne~Y~~s~Dwf~lGCllYemi~G~sPFr~ 388 (591)
T KOG0986|consen 316 ENILLDDHGHVRISDLGLAVEIPEGK---PIRGRVGTVGYMAPEVLQNEVYDFSPDWFSLGCLLYEMIAGHSPFRQ 388 (591)
T ss_pred hheeeccCCCeEeeccceEEecCCCC---ccccccCcccccCHHHHcCCcccCCccHHHHHhHHHHHHcccCchhh
Confidence 48889998999999999999998764 45677899999999999999999999999999999999999999864
|
|
| >cd05122 PKc_STE Catalytic domain of STE family Protein Kinases | Back alignment and domain information |
|---|
Probab=99.10 E-value=7.4e-11 Score=123.77 Aligned_cols=123 Identities=23% Similarity=0.325 Sum_probs=84.7
Q ss_pred cccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCCchhh
Q 038019 644 NIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSLDME 723 (866)
Q Consensus 644 ~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~~~ 723 (866)
|++..++...++.|||.+..++.+.. .....++..|++||+......+.++||||||++++||++|+.|+.......
T Consensus 128 ni~i~~~~~~~l~d~~~~~~~~~~~~---~~~~~~~~~~~~PE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~ 204 (253)
T cd05122 128 NILLTSDGEVKLIDFGLSAQLSDTKA---RNTMVGTPYWMAPEVINGKPYDYKADIWSLGITAIELAEGKPPYSELPPMK 204 (253)
T ss_pred HEEEccCCeEEEeecccccccccccc---ccceecCCcccCHHHHcCCCCCccccHHHHHHHHHHHHhCCCCCCCCchHH
Confidence 56666666677889999888876542 233468899999999998889999999999999999999999987532211
Q ss_pred hhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 724 KIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 724 ~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
. ...... .......++ ......+.++...|++.+|++||++.||++
T Consensus 205 ~------~~~~~~-~~~~~~~~~------~~~~~~~~~~i~~~l~~~p~~R~t~~~~l~ 250 (253)
T cd05122 205 A------LFKIAT-NGPPGLRNP------EKWSDEFKDFLKKCLQKNPEKRPTAEQLLK 250 (253)
T ss_pred H------HHHHHh-cCCCCcCcc------cccCHHHHHHHHHHccCChhhCCCHHHHhc
Confidence 1 111110 111111110 001234556667999999999999999875
|
Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core |
| >PF00069 Pkinase: Protein kinase domain Protein kinase; unclassified specificity | Back alignment and domain information |
|---|
Probab=99.10 E-value=4.2e-11 Score=126.63 Aligned_cols=129 Identities=18% Similarity=0.263 Sum_probs=85.8
Q ss_pred CcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeee-cCCCCchhHHHHHHHHHHHHHhcCCCCCCCch
Q 038019 643 PNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAM-RGHLTEKADVFSFGVVALEIISGRASSDKSLD 721 (866)
Q Consensus 643 ~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~-~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~ 721 (866)
.|++..++...++.|||.+..+. ..........+|..|+|||+.. ....+.++||||+|++++||++|+.|+.....
T Consensus 127 ~NIl~~~~~~~~l~Dfg~~~~~~--~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~~~~p~~~~~~ 204 (260)
T PF00069_consen 127 ENILLDENGEVKLIDFGSSVKLS--ENNENFNPFVGTPEYMAPEVLQQGKKYTRKSDIWSLGIILYELLTGKLPFEESNS 204 (260)
T ss_dssp GGEEESTTSEEEESSGTTTEEST--STTSEBSSSSSSGGGSCHHHHTTTSSBSTHHHHHHHHHHHHHHHHSSSSSTTSSH
T ss_pred ccccccccccccccccccccccc--ccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 36666666667899999887641 1122333456899999999998 88999999999999999999999999986522
Q ss_pred hhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 722 MEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 722 ~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
.+............. ...... .......+.++...|++.+|++||+|.++++
T Consensus 205 ~~~~~~~~~~~~~~~--------~~~~~~-~~~~~~~l~~li~~~l~~~p~~R~~~~~l~~ 256 (260)
T PF00069_consen 205 DDQLEIIEKILKRPL--------PSSSQQ-SREKSEELRDLIKKMLSKDPEQRPSAEELLK 256 (260)
T ss_dssp HHHHHHHHHHHHTHH--------HHHTTS-HTTSHHHHHHHHHHHSSSSGGGSTTHHHHHT
T ss_pred hhhhhhhhhcccccc--------cccccc-cchhHHHHHHHHHHHccCChhHCcCHHHHhc
Confidence 222222211111000 000000 0001145666777999999999999999975
|
Serine/Threonine protein kinases, catalytic domain Tyrosine kinase, catalytic domain; InterPro: IPR017442 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Eukaryotic protein kinases [, , , , ] are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. There are a number of conserved regions in the catalytic domain of protein kinases. In the N-terminal extremity of the catalytic domain there is a glycine-rich stretch of residues in the vicinity of a lysine residue, which has been shown to be involved in ATP binding. In the central part of the catalytic domain there is a conserved aspartic acid residue which is important for the catalytic activity of the enzyme []. This entry includes protein kinases from eukaryotes and viruses and may include some bacterial hits too.; GO: 0004672 protein kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 3GC7_A 3ZYA_A 3MPT_A 3NEW_A 3MVM_A 1R3C_A 2FST_X 3E93_A 3HV5_B 3OCG_A .... |
| >cd07879 STKc_p38delta_MAPK13 Catalytic domain of the Serine/Threonine Kinase, p38delta Mitogen-Activated Protein Kinase | Back alignment and domain information |
|---|
Probab=99.10 E-value=3.3e-11 Score=133.29 Aligned_cols=135 Identities=13% Similarity=0.146 Sum_probs=83.2
Q ss_pred CcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeec-CCCCchhHHHHHHHHHHHHHhcCCCCCCCch
Q 038019 643 PNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMR-GHLTEKADVFSFGVVALEIISGRASSDKSLD 721 (866)
Q Consensus 643 ~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~-~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~ 721 (866)
.|++...+...++.|||.++...... .+..++..|+|||+..+ ..++.++|||||||+++||++|+.|+.....
T Consensus 146 ~NIll~~~~~~kL~dfg~~~~~~~~~-----~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slGvil~el~~g~~pf~~~~~ 220 (342)
T cd07879 146 GNLAVNEDCELKILDFGLARHADAEM-----TGYVVTRWYRAPEVILNWMHYNQTVDIWSVGCIMAEMLTGKTLFKGKDY 220 (342)
T ss_pred HHEEECCCCCEEEeeCCCCcCCCCCC-----CCceeeecccChhhhcCccccCchHHHHHHHHHHHHHHhCCCCCCCCCH
Confidence 36666666778889999988765432 23356889999999876 4689999999999999999999999975432
Q ss_pred hhhhcHHHHHH--------HHhhcCCcccccC--Cc-----ccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 722 MEKIYLLEWAW--------NLHENNQSFGLVD--PT-----LTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 722 ~~~~~l~~~~~--------~~~~~~~~~~~~d--~~-----l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
........+.. ...........++ +. +..........+.++...|++.+|++||++.||+.
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~R~~~~e~l~ 296 (342)
T cd07879 221 LDQLTQILKVTGVPGPEFVQKLEDKAAKSYIKSLPKYPRKDFSTLFPKASPQAVDLLEKMLELDVDKRLTATEALE 296 (342)
T ss_pred HHHHHHHHHhcCCCCHHHHHHhcccchHHHHhhcCCcccchHHHHhcCCCHHHHHHHHHHcCCChhhCcCHHHHhc
Confidence 22111110000 0000000000000 00 00000011234567778999999999999999984
|
Serine/Threonine Kinases (STKs), p38delta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38delta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38delta, also called MAPK13 |
| >cd05586 STKc_Sck1_like Catalytic domain of Suppressor of loss of cAMP-dependent protein kinase-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.6e-11 Score=133.39 Aligned_cols=118 Identities=19% Similarity=0.153 Sum_probs=76.7
Q ss_pred CcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecC-CCCchhHHHHHHHHHHHHHhcCCCCCCCch
Q 038019 643 PNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRG-HLTEKADVFSFGVVALEIISGRASSDKSLD 721 (866)
Q Consensus 643 ~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~-~~t~ksDVySfGvvLlEl~tg~~p~~~~~~ 721 (866)
.|++...+...++.|||.++....+. .......||.+|||||++.+. .++.++|||||||+++||+||+.|+.....
T Consensus 125 ~Nili~~~~~~kl~Dfg~a~~~~~~~--~~~~~~~gt~~y~aPE~~~~~~~~~~~~DvwslGvil~elltG~~Pf~~~~~ 202 (330)
T cd05586 125 ENILLDATGHIALCDFGLSKANLTDN--KTTNTFCGTTEYLAPEVLLDEKGYTKHVDFWSLGVLVFEMCCGWSPFYAEDT 202 (330)
T ss_pred HHeEECCCCCEEEecCCcCcCCCCCC--CCccCccCCccccCHHHHcCCCCCCCccceeccccEEEEeccCCCCCCCCCH
Confidence 36666666667889999887643322 112344689999999998754 489999999999999999999999875322
Q ss_pred hhhhcHHHHHHHHhhcCCcccccCCccc-ccCHHHHHHHHHHHHHccCCCCCCCCCHH
Q 038019 722 MEKIYLLEWAWNLHENNQSFGLVDPTLT-EFNDKEALRVIGVALLCTQTSPMMRPPMS 778 (866)
Q Consensus 722 ~~~~~l~~~~~~~~~~~~~~~~~d~~l~-~~~~~~~~~~~~la~~C~~~~p~~RPsm~ 778 (866)
.+ + ......+. ..+. ....++. .++...|++.+|++||++.
T Consensus 203 ~~---~----~~~i~~~~------~~~~~~~~~~~~---~~li~~~L~~~P~~R~~~~ 244 (330)
T cd05586 203 QQ---M----YRNIAFGK------VRFPKNVLSDEG---RQFVKGLLNRNPQHRLGAH 244 (330)
T ss_pred HH---H----HHHHHcCC------CCCCCccCCHHH---HHHHHHHcCCCHHHCCCCC
Confidence 11 1 11111111 1111 1112233 3455699999999999644
|
Serine/Threonine Kinases (STKs), Fission yeast Suppressor of loss of cAMP-dependent protein kinase (Sck1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sck1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the Schizosaccharomyces pombe STK Sck1. Sck1 plays a role in trehalase activation triggered by glucose and a nitrogen source. Trehalase catalyzes the cleavage of the disaccharide trehalose to glucose. Trehalose, as a carbohydrate reserve and stress metabolite, plays an important role in the response of |
| >cd05630 STKc_GRK6 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 6 | Back alignment and domain information |
|---|
Probab=99.09 E-value=3.7e-11 Score=129.23 Aligned_cols=124 Identities=19% Similarity=0.174 Sum_probs=81.3
Q ss_pred cccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCCchhh
Q 038019 644 NIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSLDME 723 (866)
Q Consensus 644 ~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~~~ 723 (866)
|++...+...++.|||.+..+..+. .+....||..|+|||+..++.++.++|||||||+++||++|+.|+.......
T Consensus 132 Nil~~~~~~~~l~Dfg~~~~~~~~~---~~~~~~g~~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~~g~~Pf~~~~~~~ 208 (285)
T cd05630 132 NILLDDHGHIRISDLGLAVHVPEGQ---TIKGRVGTVGYMAPEVVKNERYTFSPDWWALGCLLYEMIAGQSPFQQRKKKI 208 (285)
T ss_pred HEEECCCCCEEEeeccceeecCCCc---cccCCCCCccccChHHHcCCCCCCccccHHHHHHHHHHHhCCCCCCCCCccc
Confidence 5555555556788999887765432 2345579999999999999999999999999999999999999997533211
Q ss_pred hhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCC-----HHHHHH
Q 038019 724 KIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPP-----MSRVVA 782 (866)
Q Consensus 724 ~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPs-----m~~V~~ 782 (866)
..... ....... .......... .+.++...|++.+|++||+ +.|+.+
T Consensus 209 ~~~~~---~~~~~~~------~~~~~~~~~~---~~~~li~~~l~~~p~~R~s~~~~~~~~~~~ 260 (285)
T cd05630 209 KREEV---ERLVKEV------QEEYSEKFSP---DARSLCKMLLCKDPKERLGCQGGGAREVKE 260 (285)
T ss_pred hHHHH---Hhhhhhh------hhhcCccCCH---HHHHHHHHHhhcCHHHccCCCCCchHHHHc
Confidence 00001 1110000 0011111112 2445666899999999999 667664
|
Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK6 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK6 is widely expressed in many tissues. t is expressed as |
| >cd08530 STKc_CNK2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii CNK2, and similar domains | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.2e-10 Score=122.84 Aligned_cols=121 Identities=18% Similarity=0.161 Sum_probs=86.2
Q ss_pred CcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCCchh
Q 038019 643 PNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSLDM 722 (866)
Q Consensus 643 ~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~~ 722 (866)
.|++...+...++.|||.+..+..+ ......++..|++||+.....++.++||||||++++||++|+.|+......
T Consensus 132 ~ni~~~~~~~~kl~d~g~~~~~~~~----~~~~~~~~~~~~~Pe~~~~~~~~~~~D~~slG~~~~~l~~g~~p~~~~~~~ 207 (256)
T cd08530 132 ANILLVANDLVKIGDLGISKVLKKN----MAKTQIGTPHYMAPEVWKGRPYSYKSDIWSLGCLLYEMATFAPPFEARSMQ 207 (256)
T ss_pred ceEEEecCCcEEEeeccchhhhccC----CcccccCCccccCHHHHCCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHH
Confidence 3555555556678899988887654 233456889999999999999999999999999999999999998754321
Q ss_pred hhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 723 EKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 723 ~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
+ +... ...+... .........+..+...|++.+|++||++.+|++
T Consensus 208 ~---~~~~----~~~~~~~--------~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~~l~ 252 (256)
T cd08530 208 D---LRYK----VQRGKYP--------PIPPIYSQDLQNFIRSMLQVKPKLRPNCDKILA 252 (256)
T ss_pred H---HHHH----HhcCCCC--------CCchhhCHHHHHHHHHHcCCCcccCCCHHHHhc
Confidence 1 1111 1111111 111223344667778999999999999999975
|
Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii Never In Mitosis gene A (NIMA)-related kinase 1 (CNK2)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii CNK2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes CNK1, and -2. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii CNK2 has both cilliary and cell cycle functions. It influences flagellar length through promoting flagellar disassembly, an |
| >cd07830 STKc_MAK_like Catalytic domain of Male germ cell-Associated Kinase-like Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.3e-10 Score=122.78 Aligned_cols=137 Identities=15% Similarity=0.223 Sum_probs=85.4
Q ss_pred CcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeee-cCCCCchhHHHHHHHHHHHHHhcCCCCCCCch
Q 038019 643 PNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAM-RGHLTEKADVFSFGVVALEIISGRASSDKSLD 721 (866)
Q Consensus 643 ~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~-~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~ 721 (866)
.|++..++...++.|||.+..+.... .+....++..|+|||+.. ...++.++||||||++++||++|+.|+.....
T Consensus 128 ~ni~i~~~~~~~l~d~~~~~~~~~~~---~~~~~~~~~~~~aPE~~~~~~~~~~~~Di~s~G~~l~el~~g~~~~~~~~~ 204 (283)
T cd07830 128 ENLLVSGPEVVKIADFGLAREIRSRP---PYTDYVSTRWYRAPEILLRSTSYSSPVDIWALGCIMAELYTLRPLFPGSSE 204 (283)
T ss_pred hhEEEcCCCCEEEeecccceeccCCC---CcCCCCCcccccCceeeecCcCcCCccchhhHHHHHHHHHhCCCccCCCCh
Confidence 46677766777889999887765432 233346788999999875 45689999999999999999999988865432
Q ss_pred hhhhc-HH---------HHHHHHhhcCCcccccC----CcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 722 MEKIY-LL---------EWAWNLHENNQSFGLVD----PTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 722 ~~~~~-l~---------~~~~~~~~~~~~~~~~d----~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
.+... .. .|.............+. ..+..........+.+++.+|++.+|++||+++||+.
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rpt~~ei~~ 279 (283)
T cd07830 205 IDQLYKICSVLGTPTKQDWPEGYKLASKLGFRFPQFAPTSLHQLIPNASPEAIDLIKDMLRWDPKKRPTASQALQ 279 (283)
T ss_pred HHHHHHHHHhcCCCChhhhhhHhhhhccccccccccccccHHHHcccCCHHHHHHHHHhcccCcccCCCHHHHhh
Confidence 22110 00 01111100000100000 0000001111345777888999999999999999975
|
Serine/Threonine Kinases (STKs), Male germ cell-Associated Kinase (MAK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of human MAK and MAK-related kinase (MRK), Saccharomyces cerevisiae Ime2p, Schizosaccharomyces pombe Mei4-dependent protein 3 (Mde3) and Pit1, Caenorhabditis elegans dyf-5, Arabidopsis thaliana MHK, and similar proteins. These proteins play important roles during meiosis. MAK is highly expressed in testicular cells specifically in the meiotic phase, but is not essential for spermatogenesis and fertili |
| >cd07847 STKc_CDKL1_4 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 1 and 4 | Back alignment and domain information |
|---|
Probab=99.09 E-value=4.4e-11 Score=128.53 Aligned_cols=138 Identities=21% Similarity=0.234 Sum_probs=86.3
Q ss_pred CcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeec-CCCCchhHHHHHHHHHHHHHhcCCCCCCCch
Q 038019 643 PNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMR-GHLTEKADVFSFGVVALEIISGRASSDKSLD 721 (866)
Q Consensus 643 ~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~-~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~ 721 (866)
.|++...+...++.|||.+..+..+. ..+....++..|+|||+..+ ..++.++|||||||+++||+||+.|+.....
T Consensus 129 ~nil~~~~~~~~l~dfg~~~~~~~~~--~~~~~~~~~~~~~aPE~~~~~~~~~~~~Di~slG~i~~~l~~g~~p~~~~~~ 206 (286)
T cd07847 129 ENILITKQGQIKLCDFGFARILTGPG--DDYTDYVATRWYRAPELLVGDTQYGPPVDVWAIGCVFAELLTGQPLWPGKSD 206 (286)
T ss_pred hhEEEcCCCcEEECccccceecCCCc--ccccCcccccccCCHHHHhCCCCcCchhhhHHHHHHHHHHHhCCCCCCCCCh
Confidence 46666666678889999998876543 13334467889999998765 5689999999999999999999999875443
Q ss_pred hhhhcHH-HHHHH-------HhhcCCc-ccccCCcccc-cCH-----HHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 722 MEKIYLL-EWAWN-------LHENNQS-FGLVDPTLTE-FND-----KEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 722 ~~~~~l~-~~~~~-------~~~~~~~-~~~~d~~l~~-~~~-----~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
.+..... ..... .+..... .....|.... .+. .....+.++..+|++.+|++||++.|++.
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~eil~ 282 (286)
T cd07847 207 VDQLYLIRKTLGDLIPRHQQIFSTNQFFKGLSIPEPETREPLESKFPNISSPALSFLKGCLQMDPTERLSCEELLE 282 (286)
T ss_pred HHHHHHHHHHhCCCChHHhhhcccccccccccCCCcccccCHHHHhccCCHHHHHHHHHHhcCCccccCCHHHHhc
Confidence 2221111 00000 0000000 0000111100 000 11234667888999999999999999874
|
Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 1 (CDKL1) and CDKL4 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL1 and CDKL4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL1, also called p42 KKIALRE, is a glial protein that is upregulated in gliosis. It is present in neuroblastoma and A431 human carcinoma cells, and may be implicated in neoplastic transformation. The functio |
| >cd06615 PKc_MEK Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase | Back alignment and domain information |
|---|
Probab=99.09 E-value=5e-11 Score=129.77 Aligned_cols=131 Identities=18% Similarity=0.184 Sum_probs=83.8
Q ss_pred cccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCCchhh
Q 038019 644 NIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSLDME 723 (866)
Q Consensus 644 ~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~~~ 723 (866)
|++...+...++.|||.++.+..+. .....|+..|+|||+..+..++.++|||||||+++||+||+.|+.......
T Consensus 130 nil~~~~~~~~l~dfg~~~~~~~~~----~~~~~~~~~~~aPE~~~~~~~~~~~DiwslG~~l~~l~~g~~p~~~~~~~~ 205 (308)
T cd06615 130 NILVNSRGEIKLCDFGVSGQLIDSM----ANSFVGTRSYMSPERLQGTHYTVQSDIWSLGLSLVEMAIGRYPIPPPDAKE 205 (308)
T ss_pred HEEEecCCcEEEccCCCcccccccc----cccCCCCcCccChhHhcCCCCCccchHHHHHHHHHHHHhCCCCCCCcchhh
Confidence 5666556667889999887664332 223468899999999888889999999999999999999999986432211
Q ss_pred hhcHHHHHHHHhhcCCcc---------------------------cccCCcccccCHHHHHHHHHHHHHccCCCCCCCCC
Q 038019 724 KIYLLEWAWNLHENNQSF---------------------------GLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPP 776 (866)
Q Consensus 724 ~~~l~~~~~~~~~~~~~~---------------------------~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPs 776 (866)
...+........... .-..|.+.. ......+.+++.+|++.+|++||+
T Consensus 206 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~li~~~l~~~P~~Rpt 280 (308)
T cd06615 206 ---LEAMFGRPVSEGEAKESHRPVSGHPPDSPRPMAIFELLDYIVNEPPPKLPS--GAFSDEFQDFVDKCLKKNPKERAD 280 (308)
T ss_pred ---HHHhhcCccccccccCCcccccCCCCCccchhhHHHHHHHHhcCCCccCcC--cccCHHHHHHHHHHccCChhhCcC
Confidence 111111000000000 000011100 001124667888999999999999
Q ss_pred HHHHHHH
Q 038019 777 MSRVVAM 783 (866)
Q Consensus 777 m~~V~~~ 783 (866)
|.||++.
T Consensus 281 ~~~ll~~ 287 (308)
T cd06615 281 LKELTKH 287 (308)
T ss_pred HHHHhcC
Confidence 9999865
|
Protein kinases (PKs), MAP/ERK kinase (MEK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 and MEK2 are dual-specificity PKs that phosphorylate and activate the down |
| >KOG0577 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.09 E-value=3.1e-10 Score=123.45 Aligned_cols=125 Identities=18% Similarity=0.229 Sum_probs=88.9
Q ss_pred hccCCCCCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeee---cCCCCchhHHHHHHHHHHHHHhc
Q 038019 636 LVGIGSKPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAM---RGHLTEKADVFSFGVVALEIISG 712 (866)
Q Consensus 636 ~~~~~~~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~---~~~~t~ksDVySfGvvLlEl~tg 712 (866)
++......||++.+-...++.|||.+.+..-. ...+||+.|||||++. .|+|+-|+||||+||...||.-.
T Consensus 148 IHRDiKAGNILLse~g~VKLaDFGSAsi~~PA------nsFvGTPywMAPEVILAMDEGqYdgkvDvWSLGITCIELAER 221 (948)
T KOG0577|consen 148 IHRDIKAGNILLSEPGLVKLADFGSASIMAPA------NSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAER 221 (948)
T ss_pred HhhhccccceEecCCCeeeeccccchhhcCch------hcccCCccccchhHheeccccccCCccceeeccchhhhhhhc
Confidence 33444556888888888999999988766421 2247999999999875 68999999999999999999999
Q ss_pred CCCCCCCchhhhhcHHHHHHHHhhcCCcccccCCccc-ccCHHHHHHHHHHHHHccCCCCCCCCCHHHHH
Q 038019 713 RASSDKSLDMEKIYLLEWAWNLHENNQSFGLVDPTLT-EFNDKEALRVIGVALLCTQTSPMMRPPMSRVV 781 (866)
Q Consensus 713 ~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~-~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~ 781 (866)
|+|.-.+..+... +. + .+--.|.+. ....+....+++ .|++.-|.+|||-.+.+
T Consensus 222 kPPlFnMNAMSAL------YH-I-----AQNesPtLqs~eWS~~F~~Fvd---~CLqKipqeRptse~ll 276 (948)
T KOG0577|consen 222 KPPLFNMNAMSAL------YH-I-----AQNESPTLQSNEWSDYFRNFVD---SCLQKIPQERPTSEELL 276 (948)
T ss_pred CCCccCchHHHHH------HH-H-----HhcCCCCCCCchhHHHHHHHHH---HHHhhCcccCCcHHHHh
Confidence 9997654433221 11 1 111234452 223445555555 89999999999987754
|
|
| >cd06618 PKc_MKK7 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 7 | Back alignment and domain information |
|---|
Probab=99.09 E-value=3e-11 Score=130.76 Aligned_cols=126 Identities=21% Similarity=0.280 Sum_probs=83.0
Q ss_pred CcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCC----CCchhHHHHHHHHHHHHHhcCCCCCC
Q 038019 643 PNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGH----LTEKADVFSFGVVALEIISGRASSDK 718 (866)
Q Consensus 643 ~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~----~t~ksDVySfGvvLlEl~tg~~p~~~ 718 (866)
.|++..++...++.|||.+..+..+.. +....++..|+|||++.... ++.++||||||++++||++|+.|+..
T Consensus 144 ~nill~~~~~~kL~dfg~~~~~~~~~~---~~~~~~~~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~ 220 (296)
T cd06618 144 SNILLDASGNVKLCDFGISGRLVDSKA---KTRSAGCAAYMAPERIDPPDPNPKYDIRADVWSLGISLVELATGQFPYKN 220 (296)
T ss_pred HHEEEcCCCCEEECccccchhccCCCc---ccCCCCCccccCHhhcCCCCCccccccchhHHHHHHHHHHHHhCCCCCCc
Confidence 356666666778899998877754321 22335788999999987554 88999999999999999999999864
Q ss_pred CchhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 038019 719 SLDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAM 783 (866)
Q Consensus 719 ~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~ 783 (866)
.... ..... ...... . +.+.. ......++.+++.+|++.+|++||++.++++.
T Consensus 221 ~~~~--~~~~~---~~~~~~-~-----~~~~~-~~~~~~~l~~li~~~l~~~p~~Rp~~~~il~~ 273 (296)
T cd06618 221 CKTE--FEVLT---KILQEE-P-----PSLPP-NEGFSPDFCSFVDLCLTKDHRKRPKYRELLQH 273 (296)
T ss_pred chhH--HHHHH---HHhcCC-C-----CCCCC-CCCCCHHHHHHHHHHccCChhhCCCHHHHhcC
Confidence 3211 11111 111111 0 11110 00112345667779999999999999999754
|
Protein kinases (PKs), MAP kinase kinase 7 (MKK7) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK7 is a dual-specificity PK that phosphorylates and activates it |
| >cd07872 STKc_PCTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-2 kinase | Back alignment and domain information |
|---|
Probab=99.09 E-value=7.1e-11 Score=128.64 Aligned_cols=138 Identities=14% Similarity=0.101 Sum_probs=84.4
Q ss_pred CcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeec-CCCCchhHHHHHHHHHHHHHhcCCCCCCCch
Q 038019 643 PNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMR-GHLTEKADVFSFGVVALEIISGRASSDKSLD 721 (866)
Q Consensus 643 ~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~-~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~ 721 (866)
.|++...+...++.|||.++...... ..+....+|..|+|||++.+ ..++.++|||||||+++||+||+.|+.....
T Consensus 133 ~Nill~~~~~~kl~Dfg~~~~~~~~~--~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~el~tg~~pf~~~~~ 210 (309)
T cd07872 133 QNLLINERGELKLADFGLARAKSVPT--KTYSNEVVTLWYRPPDVLLGSSEYSTQIDMWGVGCIFFEMASGRPLFPGSTV 210 (309)
T ss_pred HHEEECCCCCEEECccccceecCCCc--cccccccccccccCCHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCh
Confidence 36666666677899999887654332 12233467899999998764 5689999999999999999999999875443
Q ss_pred hhhhcHHHHHH--------HHhhcC-CcccccCCccc-----ccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 722 MEKIYLLEWAW--------NLHENN-QSFGLVDPTLT-----EFNDKEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 722 ~~~~~l~~~~~--------~~~~~~-~~~~~~d~~l~-----~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
.+......... ...... .....-.+... ...........++..+|++.||++|||+.|+++
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dp~~R~t~~e~l~ 285 (309)
T cd07872 211 EDELHLIFRLLGTPTEETWPGISSNDEFKNYNFPKYKPQPLINHAPRLDTEGIELLTKFLQYESKKRISAEEAMK 285 (309)
T ss_pred HHHHHHHHHHhCCCCHHHHhhhcchhhhhhhhcCccCCCchhhhccCCCHHHHHHHHHhccCChhhCCCHHHHhc
Confidence 32222221111 000000 00000000000 000001123456777999999999999999975
|
Serine/Threonine Kinases (STKs), PCTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-2 is specifically expressed in neurons in the central nervous system, mainly in terminally differentiated neurons. It associates with Trap (Tudor repeat associator with PCTAIRE-2) and could play |
| >cd06644 STKc_STK10_LOK Catalytic domain of the Protein Serine/Threonine Kinase, STK10 or Lymphocyte-oriented kinase | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.8e-10 Score=124.35 Aligned_cols=125 Identities=18% Similarity=0.187 Sum_probs=80.4
Q ss_pred CcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeee-----cCCCCchhHHHHHHHHHHHHHhcCCCCC
Q 038019 643 PNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAM-----RGHLTEKADVFSFGVVALEIISGRASSD 717 (866)
Q Consensus 643 ~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~-----~~~~t~ksDVySfGvvLlEl~tg~~p~~ 717 (866)
.|++...+...++.|||.+....... ..+....++..|+|||++. ...++.++|||||||++|||+||+.|+.
T Consensus 139 ~Nili~~~~~~kl~dfg~~~~~~~~~--~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Dv~slG~il~el~~g~~p~~ 216 (292)
T cd06644 139 GNVLLTLDGDIKLADFGVSAKNVKTL--QRRDSFIGTPYWMAPEVVMCETMKDTPYDYKADIWSLGITLIEMAQIEPPHH 216 (292)
T ss_pred ceEEEcCCCCEEEccCccceeccccc--cccceecCCccccCceeeccccccCCCCCchhhhHhHHHHHHHHhcCCCCCc
Confidence 35665555567788999876553321 1123446889999999985 3456889999999999999999999986
Q ss_pred CCchhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 718 KSLDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 718 ~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
...... .+..... . ..+.+. .+......+.++...|++.+|++||++.+|++
T Consensus 217 ~~~~~~------~~~~~~~-~-----~~~~~~-~~~~~~~~~~~li~~~l~~~p~~Rp~~~~il~ 268 (292)
T cd06644 217 ELNPMR------VLLKIAK-S-----EPPTLS-QPSKWSMEFRDFLKTALDKHPETRPSAAQLLE 268 (292)
T ss_pred cccHHH------HHHHHhc-C-----CCccCC-CCcccCHHHHHHHHHHhcCCcccCcCHHHHhc
Confidence 432211 1111111 1 111110 01111234556677999999999999999975
|
Serine/threonine kinases (STKs), STK10 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Other names for STK10 include lymphocyte-oriented kinase (LOK) and Xenopus polo-like kinase kinase 1 (xPlkk1). STK10 is highly expressed in lymphocytes and is responsible in regulating leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. It plays a role in regulating the CD28 responsive element in T cells, and may also function as a regulator of polo-like kinase 1 (Plk1), a protein which is overexpressed in multiple tumor types. |
| >cd05594 STKc_PKB_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B alpha | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.5e-11 Score=133.29 Aligned_cols=128 Identities=17% Similarity=0.148 Sum_probs=85.3
Q ss_pred ccCCCCCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCC
Q 038019 637 VGIGSKPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASS 716 (866)
Q Consensus 637 ~~~~~~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~ 716 (866)
+......|++...+...++.|||.++.....+ .......||..|||||++.++.++.++|||||||+++||+||+.|+
T Consensus 119 HrDikp~NIll~~~~~~kL~Dfg~~~~~~~~~--~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~tG~~Pf 196 (325)
T cd05594 119 YRDLKLENLMLDKDGHIKITDFGLCKEGIKDG--ATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPF 196 (325)
T ss_pred ecCCCCCeEEECCCCCEEEecCCCCeecCCCC--cccccccCCcccCCHHHHccCCCCCccccccccceeeeeccCCCCC
Confidence 33334447777777778899999876532211 1123346899999999999999999999999999999999999998
Q ss_pred CCCchhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCC-----CHHHHHH
Q 038019 717 DKSLDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRP-----PMSRVVA 782 (866)
Q Consensus 717 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RP-----sm~~V~~ 782 (866)
....... +...+. .+ ...+......+ +.++...|++.||++|+ ++.++++
T Consensus 197 ~~~~~~~---~~~~i~----~~------~~~~p~~~~~~---~~~li~~~L~~dP~~R~~~~~~~~~~il~ 251 (325)
T cd05594 197 YNQDHEK---LFELIL----ME------EIRFPRTLSPE---AKSLLSGLLKKDPKQRLGGGPDDAKEIMQ 251 (325)
T ss_pred CCCCHHH---HHHHHh----cC------CCCCCCCCCHH---HHHHHHHHhhcCHHHhCCCCCCCHHHHhc
Confidence 7543221 111111 11 01111111223 34455699999999996 8888864
|
Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, alpha (or Akt1) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-alpha is predominantly expressed in endothelial cells. It is critical for the regulation of angiogenesis and the maintenance of vascular integrity. It also plays a role in adipocyte differentiation. Mice deficien |
| >PTZ00426 cAMP-dependent protein kinase catalytic subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=4.9e-11 Score=131.62 Aligned_cols=119 Identities=15% Similarity=0.133 Sum_probs=82.8
Q ss_pred CcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCCchh
Q 038019 643 PNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSLDM 722 (866)
Q Consensus 643 ~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~~ 722 (866)
.|++...+...++.|||.++.+..... ...||+.|||||++.+..++.++|||||||+++||+||+.|+......
T Consensus 160 ~NILl~~~~~ikL~DFG~a~~~~~~~~-----~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~ell~G~~Pf~~~~~~ 234 (340)
T PTZ00426 160 ENLLLDKDGFIKMTDFGFAKVVDTRTY-----TLCGTPEYIAPEILLNVGHGKAADWWTLGIFIYEILVGCPPFYANEPL 234 (340)
T ss_pred HHEEECCCCCEEEecCCCCeecCCCcc-----eecCChhhcCHHHHhCCCCCccccccchhhHHHHHhcCCCCCCCCCHH
Confidence 366666667788999999988764332 346899999999999888999999999999999999999999754321
Q ss_pred hhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCC-----CHHHHHH
Q 038019 723 EKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRP-----PMSRVVA 782 (866)
Q Consensus 723 ~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RP-----sm~~V~~ 782 (866)
. .......+.. .+.....+++ .++...|++.+|++|+ +++++.+
T Consensus 235 ~-------~~~~i~~~~~------~~p~~~~~~~---~~li~~~l~~dp~~R~~~~~~~~~~~~~ 283 (340)
T PTZ00426 235 L-------IYQKILEGII------YFPKFLDNNC---KHLMKKLLSHDLTKRYGNLKKGAQNVKE 283 (340)
T ss_pred H-------HHHHHhcCCC------CCCCCCCHHH---HHHHHHHcccCHHHcCCCCCCCHHHHHc
Confidence 1 1111111111 1111122233 3455599999999995 7777754
|
|
| >cd07839 STKc_CDK5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 5 | Back alignment and domain information |
|---|
Probab=99.08 E-value=1e-10 Score=125.57 Aligned_cols=135 Identities=14% Similarity=0.101 Sum_probs=82.1
Q ss_pred cccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecC-CCCchhHHHHHHHHHHHHHhcCCCCCCCchh
Q 038019 644 NIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRG-HLTEKADVFSFGVVALEIISGRASSDKSLDM 722 (866)
Q Consensus 644 ~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~-~~t~ksDVySfGvvLlEl~tg~~p~~~~~~~ 722 (866)
|++...+...++.|||.++.++.+. ..+....++..|+|||++.+. .++.++|||||||+++||+||+.|+......
T Consensus 129 nil~~~~~~~~l~dfg~~~~~~~~~--~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~tg~~p~~~~~~~ 206 (284)
T cd07839 129 NLLINKNGELKLADFGLARAFGIPV--RCYSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDV 206 (284)
T ss_pred HEEEcCCCcEEECccchhhccCCCC--CCcCCCccccCCcChHHHhCCcccCcHHHHHHHHHHHHHHHhcCCCCcCCCCH
Confidence 5666666667889999988776432 122334678899999987764 4689999999999999999999986543321
Q ss_pred hhhcHHHHHHHHhhcC------CcccccCCc----cc------ccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 723 EKIYLLEWAWNLHENN------QSFGLVDPT----LT------EFNDKEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 723 ~~~~l~~~~~~~~~~~------~~~~~~d~~----l~------~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
. ...+......... ...+..+.. .. .........+.++...|++.+|++|||+.++++
T Consensus 207 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~t~~~il~ 280 (284)
T cd07839 207 D--DQLKRIFRLLGTPTEESWPGVSKLPDYKPYPMYPATTSLVNVVPKLNSTGRDLLQNLLVCNPVQRISAEEALQ 280 (284)
T ss_pred H--HHHHHHHHHhCCCChHHhHHhhhcccccccCCCCCcchhhhhcccCCHHHHHHHHHHhcCChhhcCCHHHHhc
Confidence 1 1111111110000 000000000 00 000111234456777999999999999999875
|
Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 5 (CDK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK5 is unusual in that it is regulated by non-cyclin proteins, p35 and p39. It is highly expressed in the nervous system and is critical in normal neural development and function. It plays a role in neuronal migration and differentiation, and is also |
| >cd05056 PTKc_FAK Catalytic domain of the Protein Tyrosine Kinase, Focal Adhesion Kinase | Back alignment and domain information |
|---|
Probab=99.08 E-value=4.5e-11 Score=127.38 Aligned_cols=128 Identities=20% Similarity=0.251 Sum_probs=86.9
Q ss_pred CCcccCHHHHHHHhcCCccccccCCCCceeEEEee--cCCCCccCceeeecCCCCchhHHHHHHHHHHHHHh-cCCCCCC
Q 038019 642 KPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVT--ANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIIS-GRASSDK 718 (866)
Q Consensus 642 ~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~--~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~t-g~~p~~~ 718 (866)
..|++...+...++.|||.++.+.... .|... .++..|+|||+.....++.++|||||||+++|+++ |+.|+..
T Consensus 135 p~nili~~~~~~~l~d~g~~~~~~~~~---~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~pf~~ 211 (270)
T cd05056 135 ARNVLVSSPDCVKLGDFGLSRYLEDES---YYKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMLGVKPFQG 211 (270)
T ss_pred hheEEEecCCCeEEccCceeeeccccc---ceecCCCCccccccChhhhccCCCCchhhhHHHHHHHHHHHHcCCCCCCC
Confidence 346666555567788999887664432 22222 24468999999988889999999999999999996 9999875
Q ss_pred CchhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhcC
Q 038019 719 SLDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLAGD 787 (866)
Q Consensus 719 ~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~~~ 787 (866)
....+ ...+.. .+.. +.... .....+.+++.+|+..+|++||++.++++.|+..
T Consensus 212 ~~~~~---~~~~~~----~~~~-----~~~~~---~~~~~~~~li~~~l~~~P~~Rpt~~~~~~~l~~~ 265 (270)
T cd05056 212 VKNND---VIGRIE----NGER-----LPMPP---NCPPTLYSLMTKCWAYDPSKRPRFTELKAQLSDI 265 (270)
T ss_pred CCHHH---HHHHHH----cCCc-----CCCCC---CCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHH
Confidence 43322 222221 1111 01111 1123455566799999999999999999999854
|
Protein Tyrosine Kinase (PTK) family; Focal Adhesion Kinase (FAK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FAK is a cytoplasmic (or nonreceptor) tyr kinase that contains an autophosphorylation site and a FERM domain at the N-terminus, a central tyr kinase domain, proline-rich regions, and a C-terminal FAT (focal adhesion targeting) domain. FAK activity is dependent on integrin-mediated cell adhesion, which facilitates N-terminal autophosphorylation. Full activation is achieved by the phosphorylation of its two adjacent A-loop tyrosines. FAK is important in mediating signaling initiated at sites of cell adhesions |
| >cd06643 STKc_SLK Catalytic domain of the Protein Serine/Threonine Kinase, Ste20-like kinase | Back alignment and domain information |
|---|
Probab=99.08 E-value=5.7e-11 Score=127.51 Aligned_cols=125 Identities=19% Similarity=0.198 Sum_probs=80.3
Q ss_pred CcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeee-----cCCCCchhHHHHHHHHHHHHHhcCCCCC
Q 038019 643 PNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAM-----RGHLTEKADVFSFGVVALEIISGRASSD 717 (866)
Q Consensus 643 ~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~-----~~~~t~ksDVySfGvvLlEl~tg~~p~~ 717 (866)
.|++.......++.|||.++...... .......++..|+|||++. ...++.++|||||||++|||++|+.|+.
T Consensus 132 ~nili~~~~~~kl~dfg~~~~~~~~~--~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Dv~slGvil~el~~g~~p~~ 209 (282)
T cd06643 132 GNILFTLDGDIKLADFGVSAKNTRTI--QRRDSFIGTPYWMAPEVVMCETSKDRPYDYKADVWSLGITLIEMAQIEPPHH 209 (282)
T ss_pred ccEEEccCCCEEEccccccccccccc--cccccccccccccCHhhccccCCCCCCCCccchhhhHHHHHHHHccCCCCcc
Confidence 45665555567789999887654321 1122346889999999874 4557889999999999999999999986
Q ss_pred CCchhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 718 KSLDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 718 ~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
.....+ ... .... ........|. .+ ...+.++...|++.+|++||++.+|++
T Consensus 210 ~~~~~~--~~~----~~~~-~~~~~~~~~~--~~----~~~~~~li~~~l~~~p~~Rp~~~~il~ 261 (282)
T cd06643 210 ELNPMR--VLL----KIAK-SEPPTLAQPS--RW----SSEFKDFLKKCLEKNVDARWTTTQLLQ 261 (282)
T ss_pred ccCHHH--HHH----HHhh-cCCCCCCCcc--cc----CHHHHHHHHHHccCChhhCcCHHHHhc
Confidence 533211 111 1111 1000111110 11 123455667999999999999999864
|
Serine/threonine kinases (STKs), Ste20-like kinase (SLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It acts as a MAPK kinase kinase (MAPKKK) by phosphorylating ASK1, resulting in the phosphorylation of p38. SLK also plays a role in mediating actin reorganization. It is part of a microtubule-associated complex that is targeted at adhesion sites, and is required in focal adhesion turnover and in regulating cell migration. |
| >cd06623 PKc_MAPKK_plant_like Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins | Back alignment and domain information |
|---|
Probab=99.08 E-value=7e-11 Score=125.21 Aligned_cols=126 Identities=18% Similarity=0.192 Sum_probs=85.9
Q ss_pred cccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCCchhh
Q 038019 644 NIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSLDME 723 (866)
Q Consensus 644 ~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~~~ 723 (866)
|++...+...++.|||.++.+....... ....++..|+|||+..++.++.++||||||++++||+||+.|+.......
T Consensus 130 ni~~~~~~~~~l~df~~~~~~~~~~~~~--~~~~~~~~y~~pE~~~~~~~~~~~Dv~slG~il~~l~tg~~p~~~~~~~~ 207 (264)
T cd06623 130 NLLINSKGEVKIADFGISKVLENTLDQC--NTFVGTVTYMSPERIQGESYSYAADIWSLGLTLLECALGKFPFLPPGQPS 207 (264)
T ss_pred HEEECCCCCEEEccCccceecccCCCcc--cceeecccccCHhhhCCCCCCchhhHHHHHHHHHHHHhCCCCCccccccC
Confidence 4555555566788999888776544322 23357889999999999999999999999999999999999987543212
Q ss_pred hhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 724 KIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 724 ~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
...+..++.. . ..+.+... .....+.++...|++.+|++||++.|+++
T Consensus 208 ~~~~~~~~~~----~-----~~~~~~~~--~~~~~l~~li~~~l~~~p~~R~~~~~ll~ 255 (264)
T cd06623 208 FFELMQAICD----G-----PPPSLPAE--EFSPEFRDFISACLQKDPKKRPSAAELLQ 255 (264)
T ss_pred HHHHHHHHhc----C-----CCCCCCcc--cCCHHHHHHHHHHccCChhhCCCHHHHHh
Confidence 2223333221 1 11111111 02234555666899999999999999986
|
Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of |
| >cd05615 STKc_cPKC_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C alpha | Back alignment and domain information |
|---|
Probab=99.08 E-value=4.3e-11 Score=131.22 Aligned_cols=118 Identities=15% Similarity=0.191 Sum_probs=80.9
Q ss_pred CcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCCchh
Q 038019 643 PNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSLDM 722 (866)
Q Consensus 643 ~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~~ 722 (866)
.|++..++...++.|||.++.....+ ...+...||..|+|||++.++.++.++|||||||+++||+||+.|+......
T Consensus 130 ~Nill~~~~~ikL~Dfg~~~~~~~~~--~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~elltG~~pf~~~~~~ 207 (323)
T cd05615 130 DNVMLDSEGHIKIADFGMCKEHMVDG--VTTRTFCGTPDYIAPEIIAYQPYGKSVDWWAYGVLLYEMLAGQPPFDGEDED 207 (323)
T ss_pred HHeEECCCCCEEEeccccccccCCCC--ccccCccCCccccCHHHHcCCCCCCccchhhhHHHHHHHHhCCCCCCCCCHH
Confidence 36666666677889999887654332 1233456899999999999889999999999999999999999999754322
Q ss_pred hhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHH
Q 038019 723 EKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMS 778 (866)
Q Consensus 723 ~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~ 778 (866)
.+...+.. +. ..... .....+.++..+|++.+|++|++..
T Consensus 208 ---~~~~~i~~----~~------~~~p~---~~~~~~~~li~~~l~~~p~~R~~~~ 247 (323)
T cd05615 208 ---ELFQSIME----HN------VSYPK---SLSKEAVSICKGLMTKHPSKRLGCG 247 (323)
T ss_pred ---HHHHHHHh----CC------CCCCc---cCCHHHHHHHHHHcccCHhhCCCCC
Confidence 12222111 11 01111 1122345566799999999999853
|
Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, a |
| >cd05628 STKc_NDR1 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 1 | Back alignment and domain information |
|---|
Probab=99.08 E-value=8.7e-11 Score=131.04 Aligned_cols=78 Identities=21% Similarity=0.235 Sum_probs=60.4
Q ss_pred CcccCHHHHHHHhcCCccccccCCCCcee---------------------------------EEEeecCCCCccCceeee
Q 038019 643 PNIFGYAELRSATKDFNRSNKLGEGGYGP---------------------------------VYKVTANSYGYLAPEYAM 689 (866)
Q Consensus 643 ~~~~~~~~~~~~~~dF~~~~~lg~g~~g~---------------------------------vy~~~~gt~gY~aPE~~~ 689 (866)
.|++...+...++.|||.++.+....... ......||+.|+|||++.
T Consensus 130 ~NILi~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~Y~aPE~~~ 209 (363)
T cd05628 130 DNLLLDSKGHVKLSDFGLCTGLKKAHRTEFYRNLNHSLPSDFTFQNMNSKRKAETWKRNRRQLAFSTVGTPDYIAPEVFM 209 (363)
T ss_pred HHeEECCCCCEEEeeccCcccccccccccccccccccccccccccccccccccchhhhccccccccccCCccccCHHHHc
Confidence 36666666677889999887664321100 112347999999999999
Q ss_pred cCCCCchhHHHHHHHHHHHHHhcCCCCCCCc
Q 038019 690 RGHLTEKADVFSFGVVALEIISGRASSDKSL 720 (866)
Q Consensus 690 ~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~ 720 (866)
...++.++|||||||+++||++|+.|+....
T Consensus 210 ~~~~~~~~DvwSlGvil~ell~G~~Pf~~~~ 240 (363)
T cd05628 210 QTGYNKLCDWWSLGVIMYEMLIGYPPFCSET 240 (363)
T ss_pred CCCCCCchhhhhhHHHHHHHHhCCCCCCCCC
Confidence 9999999999999999999999999997543
|
Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. NDR1 is highly expressed in thymus, mus |
| >KOG0033 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.6e-10 Score=113.03 Aligned_cols=115 Identities=17% Similarity=0.191 Sum_probs=83.2
Q ss_pred HHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCCchhhhhcHHHHHH
Q 038019 653 SATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSLDMEKIYLLEWAW 732 (866)
Q Consensus 653 ~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~~~~~~l~~~~~ 732 (866)
.++.|||.+..++. |.++-|.+||++|||||+.....|+..+|||+-||||+-|+.|+.||..... ..+.
T Consensus 152 vKL~~FGvAi~l~~---g~~~~G~~GtP~fmaPEvvrkdpy~kpvDiW~cGViLfiLL~G~~PF~~~~~---~rly---- 221 (355)
T KOG0033|consen 152 VKLADFGLAIEVND---GEAWHGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDEDQ---HRLY---- 221 (355)
T ss_pred eeecccceEEEeCC---ccccccccCCCcccCHHHhhcCCCCCcchhhhhhHHHHHHHhCCCCCCCccH---HHHH----
Confidence 46889999999983 4788999999999999999999999999999999999999999999975322 1222
Q ss_pred HHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 733 NLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 733 ~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
+.+..|.. -++++-.+...+++..+++ +++..||++|-|..|.++
T Consensus 222 e~I~~g~y--d~~~~~w~~is~~Ak~Lvr---rML~~dP~kRIta~EAL~ 266 (355)
T KOG0033|consen 222 EQIKAGAY--DYPSPEWDTVTPEAKSLIR---RMLTVNPKKRITADEALK 266 (355)
T ss_pred HHHhcccc--CCCCcccCcCCHHHHHHHH---HHhccChhhhccHHHHhC
Confidence 22222221 1222221222344554444 777899999999888653
|
|
| >cd06629 STKc_MAPKKK_Bck1_like Catalytic domain of fungal Bck1-like MAP Kinase Kinase Kinases | Back alignment and domain information |
|---|
Probab=99.08 E-value=9.4e-11 Score=125.04 Aligned_cols=129 Identities=20% Similarity=0.233 Sum_probs=81.6
Q ss_pred cccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCC--CCchhHHHHHHHHHHHHHhcCCCCCCCch
Q 038019 644 NIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGH--LTEKADVFSFGVVALEIISGRASSDKSLD 721 (866)
Q Consensus 644 ~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~--~t~ksDVySfGvvLlEl~tg~~p~~~~~~ 721 (866)
|++...+...++.|||.++...............|+..|+|||+..... ++.++||||||++++|+++|+.|+.....
T Consensus 138 nil~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~~~Dv~slG~~l~~l~~g~~p~~~~~~ 217 (272)
T cd06629 138 NLLVDADGICKISDFGISKKSDDIYDNDQNMSMQGSVFWMAPEVIHSYSQGYSAKVDIWSLGCVVLEMFAGRRPWSDEEA 217 (272)
T ss_pred hEEEcCCCeEEEeeccccccccccccccccccccCCccccCHHHhccccCCCCccchhHHHHHHHHHHHhCCCCCcCcch
Confidence 5565556667788998887654321111122345789999999987654 89999999999999999999999864322
Q ss_pred hhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 722 MEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 722 ~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
.+ ......... ....+++.. .......+.++...|++.+|++||+|.+|++
T Consensus 218 ~~------~~~~~~~~~-~~~~~~~~~---~~~~~~~~~~li~~~l~~~p~~Rps~~~il~ 268 (272)
T cd06629 218 IA------AMFKLGNKR-SAPPIPPDV---SMNLSPVALDFLNACFTINPDNRPTARELLQ 268 (272)
T ss_pred HH------HHHHhhccc-cCCcCCccc---cccCCHHHHHHHHHHhcCChhhCCCHHHHhh
Confidence 11 111111111 111111111 1111234555667999999999999999975
|
Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Bck1-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Saccharomyces cerevisiae Bck1 and Schizosaccharomyces pombe Mkh1, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Budding yeast Bck1 is part of the cell inte |
| >cd06605 PKc_MAPKK Catalytic domain of the dual-specificity Protein Kinase, Mitogen-Activated Protein Kinase Kinase | Back alignment and domain information |
|---|
Probab=99.08 E-value=5.5e-11 Score=126.23 Aligned_cols=126 Identities=22% Similarity=0.260 Sum_probs=83.0
Q ss_pred cccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCCchhh
Q 038019 644 NIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSLDME 723 (866)
Q Consensus 644 ~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~~~ 723 (866)
|++..++...++.|||.+..+..... ....++.+|+|||+..+..++.++||||||++++||++|+.|+.......
T Consensus 131 ni~~~~~~~~~l~d~g~~~~~~~~~~----~~~~~~~~y~~PE~~~~~~~~~~~Dv~slG~~l~~l~~g~~p~~~~~~~~ 206 (265)
T cd06605 131 NILVNSRGQIKLCDFGVSGQLVNSLA----KTFVGTSSYMAPERIQGNDYSVKSDIWSLGLSLIELATGRFPYPPENDPP 206 (265)
T ss_pred HEEECCCCCEEEeecccchhhHHHHh----hcccCChhccCHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCcccccc
Confidence 55555555667788988776643211 11568889999999998999999999999999999999999986532111
Q ss_pred hhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 724 KIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 724 ~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
....+.+...... .-+.+... .....+.+++..|+..+|++||++.+++.
T Consensus 207 -~~~~~~~~~~~~~------~~~~~~~~--~~~~~~~~li~~~l~~~p~~Rpt~~~ll~ 256 (265)
T cd06605 207 -DGIFELLQYIVNE------PPPRLPSG--KFSPDFQDFVNLCLIKDPRERPSYKELLE 256 (265)
T ss_pred -ccHHHHHHHHhcC------CCCCCChh--hcCHHHHHHHHHHcCCCchhCcCHHHHhh
Confidence 1122222222111 11111110 02233556667999999999999999874
|
Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK or MAP2K), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK or MAP3K). MAPKKs are dual-specificity |
| >cd07873 STKc_PCTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-1 kinase | Back alignment and domain information |
|---|
Probab=99.08 E-value=7.6e-11 Score=127.87 Aligned_cols=135 Identities=13% Similarity=0.129 Sum_probs=83.4
Q ss_pred CcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeec-CCCCchhHHHHHHHHHHHHHhcCCCCCCCch
Q 038019 643 PNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMR-GHLTEKADVFSFGVVALEIISGRASSDKSLD 721 (866)
Q Consensus 643 ~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~-~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~ 721 (866)
.|++..++...++.|||.++...... ..+....++..|+|||...+ ..++.++|||||||+++||+||+.|+.....
T Consensus 133 ~Nil~~~~~~~kl~dfg~~~~~~~~~--~~~~~~~~~~~y~~PE~~~~~~~~~~~~Dv~slG~~l~el~tg~~~f~~~~~ 210 (301)
T cd07873 133 QNLLINERGELKLADFGLARAKSIPT--KTYSNEVVTLWYRPPDILLGSTDYSTQIDMWGVGCIFYEMSTGRPLFPGSTV 210 (301)
T ss_pred HHEEECCCCcEEECcCcchhccCCCC--CcccccceeecccCcHHHhCCCCCccHHHHHHHHHHHHHHHhCCCCCCCCCH
Confidence 36666666677899999887654322 22334457889999998764 4578999999999999999999999875432
Q ss_pred hhhhcHHHHHHHHhh---cCCccccc---------CCccc-cc----CHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 722 MEKIYLLEWAWNLHE---NNQSFGLV---------DPTLT-EF----NDKEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 722 ~~~~~l~~~~~~~~~---~~~~~~~~---------d~~l~-~~----~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
.+ ....+..... ......++ .|... .. .......+.++..+|++.||.+|||+.||++
T Consensus 211 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ml~~dp~~R~t~~eil~ 285 (301)
T cd07873 211 EE---QLHFIFRILGTPTEETWPGILSNEEFKSYNYPKYRADCLHNHAPRLDSDGAELLSKLLQFEGRKRISAEEAMK 285 (301)
T ss_pred HH---HHHHHHHHcCCCChhhchhhhccccccccccCccccccHHhhcCCCCHHHHHHHHHHhcCCcccCcCHHHHhc
Confidence 22 1111111110 00000000 01100 00 0001123456777999999999999999975
|
Serine/Threonine Kinases (STKs), PCTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-1 is expressed ubiquitously and is localized in the cytoplasm. Its kinase activity is cell cycle dependent and peaks at the S and G2 phases. PCTAIRE-1 is highly expressed in the brain and may pl |
| >cd06635 STKc_TAO1 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 1 | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.7e-10 Score=126.09 Aligned_cols=123 Identities=21% Similarity=0.282 Sum_probs=82.4
Q ss_pred CcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeee---cCCCCchhHHHHHHHHHHHHHhcCCCCCCC
Q 038019 643 PNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAM---RGHLTEKADVFSFGVVALEIISGRASSDKS 719 (866)
Q Consensus 643 ~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~---~~~~t~ksDVySfGvvLlEl~tg~~p~~~~ 719 (866)
.|++...+...++.|||.+....... ...|+..|+|||++. .+.++.++|||||||+++||++|+.|+...
T Consensus 154 ~Nil~~~~~~~kl~dfg~~~~~~~~~------~~~~~~~y~aPE~~~~~~~~~~~~~~Dv~slGvil~el~~g~~p~~~~ 227 (317)
T cd06635 154 GNILLTEPGQVKLADFGSASIASPAN------SFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNM 227 (317)
T ss_pred ccEEECCCCCEEEecCCCccccCCcc------cccCCccccChhhhhcCCCCCCCccccHHHHHHHHHHHHhCCCCCCCc
Confidence 35665555567788999877665432 235788999999973 567899999999999999999999998643
Q ss_pred chhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHh
Q 038019 720 LDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLA 785 (866)
Q Consensus 720 ~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~ 785 (866)
..... +..+. ..+. +... .......+.+++.+|++.+|.+||++.+|++.+.
T Consensus 228 ~~~~~--~~~~~----~~~~------~~~~--~~~~~~~l~~li~~~l~~~p~~Rpt~~~il~~~~ 279 (317)
T cd06635 228 NAMSA--LYHIA----QNES------PTLQ--SNEWSDYFRNFVDSCLQKIPQDRPTSEELLKHMF 279 (317)
T ss_pred cHHHH--HHHHH----hccC------CCCC--CccccHHHHHHHHHHccCCcccCcCHHHHHhChh
Confidence 22111 11111 1110 1110 0111223556777999999999999999998655
|
Serine/threonine kinases (STKs), thousand-and-one amino acids 1 (TAO1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO1 is sometimes referred to as prostate-derived sterile 20-like kinase 2 (PSK2). TAO1 activates the p38 MAPK through direct interaction with and activation of MEK3. TAO1 is highly expressed in the brain and may play a role in neuron |
| >KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.07 E-value=2.9e-11 Score=121.23 Aligned_cols=176 Identities=19% Similarity=0.164 Sum_probs=108.0
Q ss_pred eeeEEEEEEcccC--------cCCCCCcccCCCCCCCEEEccCCCCCCCCCccccCCCCcCEEeccCCcCC---------
Q 038019 64 TCHITKLRVYGLN--------KKGVIPEELVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFS--------- 126 (866)
Q Consensus 64 ~~~v~~L~l~~~~--------l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~--------- 126 (866)
.|++..|.+++.. +...+|-.+.-+.+|..+.++.+.-.. +-+....-+.|+.+...+..++
T Consensus 181 ~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~~~-i~~~~~~kptl~t~~v~~s~~~~~~~l~pe~ 259 (490)
T KOG1259|consen 181 CTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALSTEN-IVDIELLKPTLQTICVHNTTIQDVPSLLPET 259 (490)
T ss_pred hhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccchhh-eeceeecCchhheeeeecccccccccccchh
Confidence 4677888776532 122344455667788888888764321 2222223356777766655442
Q ss_pred --------------CCCCccccCCCCCCEeeccCCCCCCCCchhhcCCCCccEEEeecCCCCCCChhhhhcCcCCCEEEe
Q 038019 127 --------------GPVPRELGNLKELTVLAFGTNNFSGALPPELGNLAKLEQLYIDSCGAGGEIPSTFAKLRNMQTLWA 192 (866)
Q Consensus 127 --------------~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 192 (866)
|..-..+...+.|++||||+|.|+ .+-.+..-++.++.|+++.|.+... +.+..|.+|+.|||
T Consensus 260 ~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDL 336 (490)
T KOG1259|consen 260 ILADPSGSEPSTSNGSALVSADTWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDL 336 (490)
T ss_pred hhcCccCCCCCccCCceEEecchHhhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeec
Confidence 111122334466788888888877 5556677778888888888877654 33777788888888
Q ss_pred cCCCCCCCCcccccCCCCCCeEEccCCCCCCCCchhhcCCCCCCEEEccCccCC
Q 038019 193 SDNPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLESLQMSDIYNV 246 (866)
Q Consensus 193 ~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~n~~~ 246 (866)
++|.++ .+..+-..|.+++.|.|+.|.+... ..+.++-+|..|++++|++.
T Consensus 337 S~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie 387 (490)
T KOG1259|consen 337 SGNLLA-ECVGWHLKLGNIKTLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIE 387 (490)
T ss_pred ccchhH-hhhhhHhhhcCEeeeehhhhhHhhh--hhhHhhhhheeccccccchh
Confidence 888776 3444555667778888888776522 34455555666666655543
|
|
| >KOG0589 consensus Serine/threonine protein kinase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.07 E-value=9.5e-11 Score=127.33 Aligned_cols=131 Identities=20% Similarity=0.203 Sum_probs=95.4
Q ss_pred hhccCCCCCcccCHHHHHHHhcCCccccccCCCC-ceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcC
Q 038019 635 VLVGIGSKPNIFGYAELRSATKDFNRSNKLGEGG-YGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGR 713 (866)
Q Consensus 635 ~~~~~~~~~~~~~~~~~~~~~~dF~~~~~lg~g~-~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~ 713 (866)
++++.....|+|...+-..++.|||+++.++.-. +. ..++||+-||.||...+..|..|+||||+|++++||.+-|
T Consensus 127 iLHRDlK~~Nifltk~~~VkLgDfGlaK~l~~~~~~a---~tvvGTp~YmcPEil~d~pYn~KSDiWsLGC~~yEm~~lk 203 (426)
T KOG0589|consen 127 VLHRDLKCANIFLTKDKKVKLGDFGLAKILNPEDSLA---STVVGTPYYMCPEILSDIPYNEKSDIWSLGCCLYEMCTLK 203 (426)
T ss_pred hhcccchhhhhhccccCceeecchhhhhhcCCchhhh---heecCCCcccCHHHhCCCCCCccCcchhhcchHHHHHhcc
Confidence 3344444568888877777999999999998653 32 3457999999999999999999999999999999999999
Q ss_pred CCCCCCchhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 038019 714 ASSDKSLDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAM 783 (866)
Q Consensus 714 ~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~ 783 (866)
++|..... ..|+..+.+ ...+|- ......++..+++ .|++.+|+.||+..+++.+
T Consensus 204 ~aF~a~~m---~~Li~ki~~--------~~~~Pl-p~~ys~el~~lv~---~~l~~~P~~RPsa~~LL~~ 258 (426)
T KOG0589|consen 204 PAFKASNM---SELILKINR--------GLYSPL-PSMYSSELRSLVK---SMLRKNPEHRPSALELLRR 258 (426)
T ss_pred cccCccch---HHHHHHHhh--------ccCCCC-CccccHHHHHHHH---HHhhcCCccCCCHHHHhhC
Confidence 99985322 223322221 112222 2223344555555 8999999999999998865
|
|
| >cd07858 STKc_TEY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TEY Mitogen-Activated Protein Kinases from Plants | Back alignment and domain information |
|---|
Probab=99.07 E-value=6.7e-11 Score=130.54 Aligned_cols=137 Identities=15% Similarity=0.127 Sum_probs=84.2
Q ss_pred cccCHHHHHHHhcCCccccccCCC-CceeEEEeecCCCCccCceeeec-CCCCchhHHHHHHHHHHHHHhcCCCCCCCch
Q 038019 644 NIFGYAELRSATKDFNRSNKLGEG-GYGPVYKVTANSYGYLAPEYAMR-GHLTEKADVFSFGVVALEIISGRASSDKSLD 721 (866)
Q Consensus 644 ~~~~~~~~~~~~~dF~~~~~lg~g-~~g~vy~~~~gt~gY~aPE~~~~-~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~ 721 (866)
|++...+...++.|||.+...... .+... ..++..|+|||.+.. ..++.++|||||||+++||++|+.|+.....
T Consensus 138 Nil~~~~~~~kL~Dfg~~~~~~~~~~~~~~---~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~ 214 (337)
T cd07858 138 NLLLNANCDLKICDFGLARTTSEKGDFMTE---YVVTRWYRAPELLLNCSEYTTAIDVWSVGCIFAELLGRKPLFPGKDY 214 (337)
T ss_pred HEEEcCCCCEEECcCccccccCCCcccccc---cccccCccChHHHhcCCCCCCcccHHHHHHHHHHHHcCCCCCCCCCh
Confidence 555555566788999988877543 23222 246889999998764 5689999999999999999999999864322
Q ss_pred hhhhcHHHHHHH--------HhhcCCcc-------cccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 038019 722 MEKIYLLEWAWN--------LHENNQSF-------GLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAM 783 (866)
Q Consensus 722 ~~~~~l~~~~~~--------~~~~~~~~-------~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~ 783 (866)
.+......-+.. ....+... ...++...........++.+++.+|++.+|++||++.|+++.
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rps~~ell~h 291 (337)
T cd07858 215 VHQLKLITELLGSPSEEDLGFIRNEKARRYIRSLPYTPRQSFARLFPHANPLAIDLLEKMLVFDPSKRITVEEALAH 291 (337)
T ss_pred HHHHHHHHHHhCCCChHHhhhcCchhhhHHHHhcCcccccCHHHHcccCCHHHHHHHHHHhcCChhhccCHHHHHcC
Confidence 111111000000 00000000 001111111111223456678889999999999999999865
|
Serine/Threonine Kinases (STKs), Plant TEY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TEY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. There are two subtypes of plant MAPKs based on the conserved phosphorylation motif present in the activati |
| >KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.07 E-value=2.5e-10 Score=119.16 Aligned_cols=76 Identities=22% Similarity=0.271 Sum_probs=65.5
Q ss_pred CcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCCc
Q 038019 643 PNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSL 720 (866)
Q Consensus 643 ~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~ 720 (866)
-|++++.|...++.|||+.+.---+ |...+...||+-|||||.+....|...+|.|||||+|+||+.|++|++...
T Consensus 479 DNvmLd~eGHiKi~DFGmcKEni~~--~~TTkTFCGTPdYiAPEIi~YqPYgksvDWWa~GVLLyEmlaGQpPFdGeD 554 (683)
T KOG0696|consen 479 DNVMLDSEGHIKIADFGMCKENIFD--GVTTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQPPFDGED 554 (683)
T ss_pred cceEeccCCceEeeecccccccccC--CcceeeecCCCcccccceEEecccccchhHHHHHHHHHHHHcCCCCCCCCC
Confidence 4788999999999999987643222 345677899999999999999999999999999999999999999999654
|
|
| >cd06641 STKc_MST3 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 3 | Back alignment and domain information |
|---|
Probab=99.07 E-value=1e-10 Score=125.13 Aligned_cols=123 Identities=20% Similarity=0.294 Sum_probs=83.9
Q ss_pred cccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCCchhh
Q 038019 644 NIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSLDME 723 (866)
Q Consensus 644 ~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~~~ 723 (866)
|++...+...++.|||.++.+.....+ .....++.+|+|||+..+...+.++|||||||+++||++|+.|+......
T Consensus 131 Ni~i~~~~~~~l~dfg~~~~~~~~~~~--~~~~~~~~~y~~PE~~~~~~~~~~~Dv~slG~~l~~l~~g~~p~~~~~~~- 207 (277)
T cd06641 131 NVLLSEHGEVKLADFGVAGQLTDTQIK--RNTFVGTPFWMAPEVIKQSAYDSKADIWSLGITAIELAKGEPPHSELHPM- 207 (277)
T ss_pred hEEECCCCCEEEeecccceecccchhh--hccccCCccccChhhhccCCCCchhhHHHHHHHHHHHHcCCCCCCccchH-
Confidence 566655556778899988776543322 22235788999999999889999999999999999999999998643221
Q ss_pred hhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 038019 724 KIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAM 783 (866)
Q Consensus 724 ~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~ 783 (866)
.+... ...+. .+.+.. .....+.+++.+|++.+|++||+|.++++.
T Consensus 208 -----~~~~~-~~~~~-----~~~~~~---~~~~~~~~~i~~~l~~~p~~Rp~~~~~l~~ 253 (277)
T cd06641 208 -----KVLFL-IPKNN-----PPTLEG---NYSKPLKEFVEACLNKEPSFRPTAKELLKH 253 (277)
T ss_pred -----HHHHH-HhcCC-----CCCCCc---ccCHHHHHHHHHHccCChhhCcCHHHHHhC
Confidence 11111 11111 111111 112335566779999999999999999874
|
Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. It may also regulate paxillin and consequently, cell migration. MST3 is present in human placenta, where it plays an essential role in the oxidative stress-induced apoptosis of trophoblasts in normal spontaneous delivery. Dysregulation of trophoblast apoptosis may result in pregnancy complications such as preeclampsia and int |
| >cd06636 STKc_MAP4K4_6 Catalytic domain of the Protein Serine/Threonine Kinases, Mitogen-Activated Protein Kinase Kinase Kinase Kinase 4 and 6 | Back alignment and domain information |
|---|
Probab=99.07 E-value=7.7e-11 Score=126.47 Aligned_cols=123 Identities=19% Similarity=0.266 Sum_probs=79.0
Q ss_pred cccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeee-----cCCCCchhHHHHHHHHHHHHHhcCCCCCC
Q 038019 644 NIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAM-----RGHLTEKADVFSFGVVALEIISGRASSDK 718 (866)
Q Consensus 644 ~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~-----~~~~t~ksDVySfGvvLlEl~tg~~p~~~ 718 (866)
|++..++...++.|||.+..+..-. .-+....|+..|+|||.+. ...++.++|||||||+++||+||+.|+..
T Consensus 151 nili~~~~~~~l~dfg~~~~~~~~~--~~~~~~~~~~~y~aPE~l~~~~~~~~~~~~~~DvwslG~~l~el~~g~~p~~~ 228 (282)
T cd06636 151 NVLLTENAEVKLVDFGVSAQLDRTV--GRRNTFIGTPYWMAPEVIACDENPDATYDYRSDIWSLGITAIEMAEGAPPLCD 228 (282)
T ss_pred HEEECCCCCEEEeeCcchhhhhccc--cCCCcccccccccCHhhcCcccCcCcCCCcccchhHHHHHHHHHHhCCCCccc
Confidence 4555555556788898876553211 1122346889999999875 35688899999999999999999999865
Q ss_pred CchhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 719 SLDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 719 ~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
..+...... .. ....+.+.. ......+.+++..|++.+|.+||++.|+++
T Consensus 229 ~~~~~~~~~------~~------~~~~~~~~~--~~~~~~~~~li~~cl~~~p~~Rp~~~ell~ 278 (282)
T cd06636 229 MHPMRALFL------IP------RNPPPKLKS--KKWSKKFIDFIEGCLVKNYLSRPSTEQLLK 278 (282)
T ss_pred cCHHhhhhh------Hh------hCCCCCCcc--cccCHHHHHHHHHHhCCChhhCcCHHHHhc
Confidence 432221110 00 011111110 111234566677999999999999999864
|
Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K4/MAP4K6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain. MAP4Ks (or MAPKKKKs) are involved in MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Ea |
| >KOG0603 consensus Ribosomal protein S6 kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.06 E-value=1e-10 Score=129.73 Aligned_cols=117 Identities=22% Similarity=0.219 Sum_probs=83.7
Q ss_pred cccC-HHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCCchh
Q 038019 644 NIFG-YAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSLDM 722 (866)
Q Consensus 644 ~~~~-~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~~ 722 (866)
||+. .+....++.|||.++.+-.. +...+-|..|.|||......+|+.+|+||+||||+||+||+.|+...+.+
T Consensus 445 NIL~~~~~g~lrltyFG~a~~~~~~-----~~tp~~t~~y~APEvl~~~~yt~acD~WSLGvlLy~ML~G~tp~~~~P~~ 519 (612)
T KOG0603|consen 445 NILLDGSAGHLRLTYFGFWSELERS-----CDTPALTLQYVAPEVLAIQEYTEACDWWSLGVLLYEMLTGRTLFAAHPAG 519 (612)
T ss_pred heeecCCCCcEEEEEechhhhCchh-----hcccchhhcccChhhhccCCCCcchhhHHHHHHHHHHHhCCCccccCCch
Confidence 5544 24445678899998887654 33445678999999999999999999999999999999999999866544
Q ss_pred hhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 723 EKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 723 ~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
. .+ ...+. .+...+...+++..++. +|++.||.+||+|.++..
T Consensus 520 ~--ei----~~~i~--------~~~~s~~vS~~AKdLl~---~LL~~dP~~Rl~~~~i~~ 562 (612)
T KOG0603|consen 520 I--EI----HTRIQ--------MPKFSECVSDEAKDLLQ---QLLQVDPALRLGADEIGA 562 (612)
T ss_pred H--HH----HHhhc--------CCccccccCHHHHHHHH---HhccCChhhCcChhhhcc
Confidence 1 11 11121 12222223344555554 899999999999999854
|
|
| >cd06645 STKc_MAP4K3 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 3 | Back alignment and domain information |
|---|
Probab=99.06 E-value=1e-10 Score=124.45 Aligned_cols=126 Identities=18% Similarity=0.227 Sum_probs=78.9
Q ss_pred cccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeee---cCCCCchhHHHHHHHHHHHHHhcCCCCCCCc
Q 038019 644 NIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAM---RGHLTEKADVFSFGVVALEIISGRASSDKSL 720 (866)
Q Consensus 644 ~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~---~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~ 720 (866)
|++...+...++.|||.+..+..... ......|+..|+|||++. .+.++.++|||||||+++||++|+.|+....
T Consensus 136 nili~~~~~~~l~dfg~~~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~~~~~~~~~DvwSlG~il~~l~~~~~p~~~~~ 213 (267)
T cd06645 136 NILLTDNGHVKLADFGVSAQITATIA--KRKSFIGTPYWMAPEVAAVERKGGYNQLCDIWAVGITAIELAELQPPMFDLH 213 (267)
T ss_pred HEEECCCCCEEECcceeeeEccCccc--ccccccCcccccChhhhccccCCCCCchhhhHHHHHHHHHHhcCCCCccccc
Confidence 45554444566789998776653211 112346889999999874 5568999999999999999999999975433
Q ss_pred hhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 721 DMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 721 ~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
+... + ..... .. ...+..... ......+.+++..|++.+|++||++.+|++
T Consensus 214 ~~~~--~----~~~~~-~~---~~~~~~~~~-~~~~~~~~~li~~~l~~~P~~R~~~~~ll~ 264 (267)
T cd06645 214 PMRA--L----FLMTK-SN---FQPPKLKDK-MKWSNSFHHFVKMALTKNPKKRPTAEKLLQ 264 (267)
T ss_pred chhh--H----Hhhhc-cC---CCCCccccc-CCCCHHHHHHHHHHccCCchhCcCHHHHhc
Confidence 2111 1 11111 00 111111100 001123456677999999999999999875
|
Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated |
| >KOG0588 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.5e-10 Score=128.17 Aligned_cols=125 Identities=18% Similarity=0.186 Sum_probs=89.8
Q ss_pred CCCCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCC-chhHHHHHHHHHHHHHhcCCCCCC
Q 038019 640 GSKPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLT-EKADVFSFGVVALEIISGRASSDK 718 (866)
Q Consensus 640 ~~~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t-~ksDVySfGvvLlEl~tg~~p~~~ 718 (866)
....|++++++-..+++|||++-+=-.| ..-+.-+|++.|.|||.+++..|. .++||||.||||+-|+||+-|||+
T Consensus 138 LKpENlLLd~~~nIKIADFGMAsLe~~g---klLeTSCGSPHYA~PEIV~G~pYdG~~sDVWSCGVILfALLtG~LPFdD 214 (786)
T KOG0588|consen 138 LKPENLLLDVKNNIKIADFGMASLEVPG---KLLETSCGSPHYAAPEIVSGRPYDGRPSDVWSCGVILFALLTGKLPFDD 214 (786)
T ss_pred CCchhhhhhcccCEeeeccceeecccCC---ccccccCCCcccCCchhhcCCCCCCCccccchhHHHHHHHHhCCCCCCC
Confidence 3345778888777899999998754333 455666899999999999998886 799999999999999999999995
Q ss_pred CchhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 038019 719 SLDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAM 783 (866)
Q Consensus 719 ~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~ 783 (866)
. +...|...|. .|.. + ++..-..++..++. +.+..||+.|-||+||.+.
T Consensus 215 d---Nir~LLlKV~----~G~f-~-----MPs~Is~eaQdLLr---~ml~VDp~~RiT~~eI~kH 263 (786)
T KOG0588|consen 215 D---NIRVLLLKVQ----RGVF-E-----MPSNISSEAQDLLR---RMLDVDPSTRITTEEILKH 263 (786)
T ss_pred c---cHHHHHHHHH----cCcc-c-----CCCcCCHHHHHHHH---HHhccCccccccHHHHhhC
Confidence 3 2233443333 2321 1 11122234444443 6778999999999999863
|
|
| >PLN00009 cyclin-dependent kinase A; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=8.1e-11 Score=127.17 Aligned_cols=135 Identities=12% Similarity=0.137 Sum_probs=81.6
Q ss_pred CcccCHH-HHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeec-CCCCchhHHHHHHHHHHHHHhcCCCCCCCc
Q 038019 643 PNIFGYA-ELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMR-GHLTEKADVFSFGVVALEIISGRASSDKSL 720 (866)
Q Consensus 643 ~~~~~~~-~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~-~~~t~ksDVySfGvvLlEl~tg~~p~~~~~ 720 (866)
.|++... ....++.|||.++.++... ..++...++..|+|||+..+ ..++.++|||||||+++||+||+.|+....
T Consensus 131 ~nill~~~~~~~kl~dfg~~~~~~~~~--~~~~~~~~~~~y~~PE~~~~~~~~~~~~Dv~slG~i~~~l~tg~~pf~~~~ 208 (294)
T PLN00009 131 QNLLIDRRTNALKLADFGLARAFGIPV--RTFTHEVVTLWYRAPEILLGSRHYSTPVDIWSVGCIFAEMVNQKPLFPGDS 208 (294)
T ss_pred ceEEEECCCCEEEEcccccccccCCCc--cccccCceeecccCHHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCC
Confidence 3555542 2345688999988775431 22334457889999998865 457999999999999999999999987543
Q ss_pred hhhhhcHHHHHHHHhhcC---Cc------c-------cccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 721 DMEKIYLLEWAWNLHENN---QS------F-------GLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 721 ~~~~~~l~~~~~~~~~~~---~~------~-------~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
..+...- +....... .. . ......+.........++.+++.+|++.+|++||+|.++++
T Consensus 209 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~P~~Rps~~~~l~ 283 (294)
T PLN00009 209 EIDELFK---IFRILGTPNEETWPGVTSLPDYKSAFPKWPPKDLATVVPTLEPAGVDLLSKMLRLDPSKRITARAALE 283 (294)
T ss_pred HHHHHHH---HHHHhCCCChhhccccccchhhhhhcccCCCCCHHHhCcCCChHHHHHHHHHccCChhhCcCHHHHhc
Confidence 3221110 00000000 00 0 00000000001111234566777999999999999999985
|
|
| >cd07841 STKc_CDK7 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 7 | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.6e-10 Score=125.13 Aligned_cols=137 Identities=14% Similarity=0.128 Sum_probs=86.4
Q ss_pred CCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeec-CCCCchhHHHHHHHHHHHHHhcCCCCCCCc
Q 038019 642 KPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMR-GHLTEKADVFSFGVVALEIISGRASSDKSL 720 (866)
Q Consensus 642 ~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~-~~~t~ksDVySfGvvLlEl~tg~~p~~~~~ 720 (866)
..|++...+...++.|||.+..++... ..+....++..|+|||++.+ ..++.++|||||||+++||++|+.++....
T Consensus 130 p~nill~~~~~~~l~dfg~~~~~~~~~--~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~e~~~g~~~~~~~~ 207 (298)
T cd07841 130 PNNLLIASDGVLKLADFGLARSFGSPN--RKMTHQVVTRWYRAPELLFGARHYGVGVDMWSVGCIFAELLLRVPFLPGDS 207 (298)
T ss_pred hhhEEEcCCCCEEEccceeeeeccCCC--ccccccccceeeeCHHHHhCCCCCCcHHHHHHHHHHHHHHHcCCccccCCc
Confidence 346777777778899999998876543 23444567889999998754 467899999999999999999977765433
Q ss_pred hhhhhcHHHHHHHHhhc---------CCcccccC------CcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 038019 721 DMEKIYLLEWAWNLHEN---------NQSFGLVD------PTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAM 783 (866)
Q Consensus 721 ~~~~~~l~~~~~~~~~~---------~~~~~~~d------~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~ 783 (866)
+.+. .+........ ........ ..+..........+.+++..|++.+|++||++.||++.
T Consensus 208 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~s~~e~l~~ 282 (298)
T cd07841 208 DIDQ---LGKIFEALGTPTEENWPGVTSLPDYVEFKPFPPTPLKQIFPAASDDALDLLQRLLTLNPNKRITARQALEH 282 (298)
T ss_pred cHHH---HHHHHHHcCCCchhhhhhcccccccccccccCCcchhhhcccccHHHHHHHHHHhcCCcccCcCHHHHhhC
Confidence 2111 1111110000 00000000 00000111123456678889999999999999999873
|
Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 7 (CDK7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK7 plays essential roles in the cell cycle and in transcription. It associates with cyclin H and MAT1 and acts as a CDK-Activating Kinase (CAK) by phosphorylating and activating cell cycle CDKs (CDK1/2/4/6). In the brain, it activates CDK5. CDK7 is |
| >KOG0592 consensus 3-phosphoinositide-dependent protein kinase (PDK1) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.8e-10 Score=124.96 Aligned_cols=132 Identities=15% Similarity=0.173 Sum_probs=91.7
Q ss_pred hccCCCCCcccCHHHHHHHhcCCccccccCCCCc---eeEE--------EeecCCCCccCceeeecCCCCchhHHHHHHH
Q 038019 636 LVGIGSKPNIFGYAELRSATKDFNRSNKLGEGGY---GPVY--------KVTANSYGYLAPEYAMRGHLTEKADVFSFGV 704 (866)
Q Consensus 636 ~~~~~~~~~~~~~~~~~~~~~dF~~~~~lg~g~~---g~vy--------~~~~gt~gY~aPE~~~~~~~t~ksDVySfGv 704 (866)
+|+....-||+.++++..++.|||.+++++.-.- +.++ +..+||..|++||.+..+..+..+|+|+|||
T Consensus 196 IHRDlKPENILLd~dmhikITDFGsAK~l~~~~~~~~~~~~~~~a~s~~~SFVGTAeYVSPElL~~~~~~~~sDiWAlGC 275 (604)
T KOG0592|consen 196 IHRDLKPENILLDKDGHIKITDFGSAKILSPSQKSQENPVDPNQASSRRSSFVGTAEYVSPELLNDSPAGPSSDLWALGC 275 (604)
T ss_pred eeccCChhheeEcCCCcEEEeeccccccCChhhccccCccCcccccCcccceeeeecccCHHHhcCCCCCcccchHHHHH
Confidence 3433334489999999999999999999973211 1122 2358999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCCCchhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 038019 705 VALEIISGRASSDKSLDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAM 783 (866)
Q Consensus 705 vLlEl~tg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~ 783 (866)
+|+.|+.|++||..... ....+.+.. +|=...+.-.+.+..+++ +-+..||.+|+|..|+.+.
T Consensus 276 ilyQmlaG~PPFra~Ne---yliFqkI~~----------l~y~fp~~fp~~a~dLv~---KLLv~dp~~Rlt~~qIk~H 338 (604)
T KOG0592|consen 276 ILYQMLAGQPPFRAANE---YLIFQKIQA----------LDYEFPEGFPEDARDLIK---KLLVRDPSDRLTSQQIKAH 338 (604)
T ss_pred HHHHHhcCCCCCccccH---HHHHHHHHH----------hcccCCCCCCHHHHHHHH---HHHccCccccccHHHHhhC
Confidence 99999999999986432 222222221 111111111233444433 5567899999999888653
|
|
| >KOG0595 consensus Serine/threonine-protein kinase involved in autophagy [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.06 E-value=3e-11 Score=126.95 Aligned_cols=69 Identities=25% Similarity=0.340 Sum_probs=60.6
Q ss_pred HHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCCchh
Q 038019 651 LRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSLDM 722 (866)
Q Consensus 651 ~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~~ 722 (866)
...|+.|||+++.+..|.+-. ..+|++-|||||+++.++|+.|+|.||.|++|||+++|+.||+.....
T Consensus 152 ~~LKIADFGfAR~L~~~~~a~---tlcGSplYMAPEV~~~~~YdAKADLWSiG~Ilyq~l~g~~Pf~a~t~~ 220 (429)
T KOG0595|consen 152 PVLKIADFGFARFLQPGSMAE---TLCGSPLYMAPEVIMSQQYDAKADLWSIGTILYQCLTGKPPFDAETPK 220 (429)
T ss_pred ceEEecccchhhhCCchhHHH---HhhCCccccCHHHHHhccccchhhHHHHHHHHHHHHhCCCCccccCHH
Confidence 567899999999998776533 357999999999999999999999999999999999999999865543
|
|
| >KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.06 E-value=3.2e-11 Score=124.26 Aligned_cols=233 Identities=20% Similarity=0.250 Sum_probs=136.2
Q ss_pred eeEEEEEEcccCcCCC----CCcccCCCCCCCEEEccCCCCCC----CCCcc-------ccCCCCcCEEeccCCcCCCCC
Q 038019 65 CHITKLRVYGLNKKGV----IPEELVTLQYLTVLKIDQNFFTG----PLPSF-------IGNLSRLMFLSFSHNDFSGPV 129 (866)
Q Consensus 65 ~~v~~L~l~~~~l~~~----~p~~l~~l~~L~~L~Ls~n~l~~----~~p~~-------l~~l~~L~~L~Ls~N~l~~~~ 129 (866)
..++.|+|++|.+... +...+.+.++|+..++++- ++| .+|.. +-.+++|++||||.|.|.-.-
T Consensus 30 ~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g 108 (382)
T KOG1909|consen 30 DSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKG 108 (382)
T ss_pred CceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccc
Confidence 3689999999987643 5566788889999999873 333 34543 446789999999999997544
Q ss_pred Ccc----ccCCCCCCEeeccCCCCCCCCchhh-------------cCCCCccEEEeecCCCCCC----ChhhhhcCcCCC
Q 038019 130 PRE----LGNLKELTVLAFGTNNFSGALPPEL-------------GNLAKLEQLYIDSCGAGGE----IPSTFAKLRNMQ 188 (866)
Q Consensus 130 p~~----l~~l~~L~~L~Ls~N~l~~~~p~~l-------------~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~ 188 (866)
+.. +.+++.|++|.|.+|.+.-.-...+ +.-++|+.+...+|++... +...|...+.|+
T Consensus 109 ~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~le 188 (382)
T KOG1909|consen 109 IRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLE 188 (382)
T ss_pred hHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccc
Confidence 433 5678999999999998863222222 2335566666666655332 223444555566
Q ss_pred EEEecCCCCCCC----CcccccCCCCCCeEEccCCCCCCCCchhhcCCCCCCEEEccCccCCCCCchhhhcCCCCCceec
Q 038019 189 TLWASDNPFTGK----IPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLESLQMSDIYNVSSSLDFVMSLKNLTDLSL 264 (866)
Q Consensus 189 ~L~L~~N~l~~~----~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L 264 (866)
.+.+..|.|... +...|..+++|+.|+|..|-|+..-... ....+..|++|+.|++
T Consensus 189 evr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~--------------------LakaL~s~~~L~El~l 248 (382)
T KOG1909|consen 189 EVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVA--------------------LAKALSSWPHLRELNL 248 (382)
T ss_pred eEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHH--------------------HHHHhcccchheeecc
Confidence 666666555321 1223444555555555555554211000 0113334445555555
Q ss_pred cCcccccCCCccc-----CCCCCcCEEeeecCcCcc----cCCcccCCCCCCcEEECcCCCCc
Q 038019 265 RNALITGTIPFGI-----GELQMLQILDLSFNNLTG----QIPATLFNIDSLEYLFLGNNSLS 318 (866)
Q Consensus 265 ~~n~l~~~~p~~~-----~~l~~L~~L~Ls~N~l~~----~~p~~l~~l~~L~~L~L~~N~l~ 318 (866)
++|.+...-...| ...++|+.|.|.+|.++- .+...+...+.|..|+|+.|++.
T Consensus 249 ~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 249 GDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred cccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence 5555443221111 224666777777776653 12233445677788888888873
|
|
| >cd06606 STKc_MAPKKK Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.1e-10 Score=123.10 Aligned_cols=126 Identities=17% Similarity=0.277 Sum_probs=86.0
Q ss_pred cccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCCchhh
Q 038019 644 NIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSLDME 723 (866)
Q Consensus 644 ~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~~~ 723 (866)
+++...+...++.||+.+..+.............++..|+|||+......+.++||||||++++||++|+.|+.....
T Consensus 131 ni~i~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~y~~pE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~-- 208 (260)
T cd06606 131 NILVDSDGVVKLADFGCAKRLGDIETGEGTGSVRGTPYWMAPEVIRGEEYGRAADIWSLGCTVIEMATGKPPWSELGN-- 208 (260)
T ss_pred HEEEcCCCCEEEcccccEEecccccccccccCCCCCccccCHhhhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCc--
Confidence 555555566778899988887765432223345688999999999988899999999999999999999999875431
Q ss_pred hhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 724 KIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 724 ~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
...-++.....+.. +.+ +......+.+++.+|++.+|++||++.|+++
T Consensus 209 ---~~~~~~~~~~~~~~-----~~~---~~~~~~~l~~~i~~~l~~~p~~Rp~~~~ll~ 256 (260)
T cd06606 209 ---PMAALYKIGSSGEP-----PEI---PEHLSEEAKDFLRKCLRRDPKKRPTADELLQ 256 (260)
T ss_pred ---hHHHHHhccccCCC-----cCC---CcccCHHHHHHHHHhCcCChhhCCCHHHHhh
Confidence 11111111110000 111 1112344556667999999999999999975
|
Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKK |
| >cd05609 STKc_MAST Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine kinase | Back alignment and domain information |
|---|
Probab=99.06 E-value=8.1e-11 Score=127.94 Aligned_cols=131 Identities=15% Similarity=0.096 Sum_probs=84.6
Q ss_pred CcccCHHHHHHHhcCCccccccCCCCceeEE-------------EeecCCCCccCceeeecCCCCchhHHHHHHHHHHHH
Q 038019 643 PNIFGYAELRSATKDFNRSNKLGEGGYGPVY-------------KVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEI 709 (866)
Q Consensus 643 ~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy-------------~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl 709 (866)
.|++.......++.|||.++.....-...++ ....|+.+|+|||++..+.++.++|||||||+++|+
T Consensus 130 ~NIll~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~vl~el 209 (305)
T cd05609 130 DNLLITSMGHIKLTDFGLSKIGLMSLTTNLYEGHIEKDTREFLDKQVCGTPEYIAPEVILRQGYGKPVDWWAMGIILYEF 209 (305)
T ss_pred HHEEECCCCCEEEeeCCCccccCcCccccccccccccchhhccccCCccCccccCchhccCCCCCchhhHHHHHHHHHHH
Confidence 3666666666778899987642111111111 123578899999999888999999999999999999
Q ss_pred HhcCCCCCCCchhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhc
Q 038019 710 ISGRASSDKSLDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLAG 786 (866)
Q Consensus 710 ~tg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~~ 786 (866)
+||+.|+......+ +...... + ....|....... ..+.+++.+|++.+|++||++.++.+.|+.
T Consensus 210 ~~g~~pf~~~~~~~------~~~~~~~-~---~~~~~~~~~~~~---~~~~~li~~~l~~~P~~R~~~~~~~~ll~~ 273 (305)
T cd05609 210 LVGCVPFFGDTPEE------LFGQVIS-D---DIEWPEGDEALP---ADAQDLISRLLRQNPLERLGTGGAFEVKQH 273 (305)
T ss_pred HhCCCCCCCCCHHH------HHHHHHh-c---ccCCCCccccCC---HHHHHHHHHHhccChhhccCccCHHHHHhC
Confidence 99999986432211 1111111 1 111222111112 234566679999999999998888887774
|
Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. There are four mammalian MAST kinases, named MAST1-MAST4. MAST1 is also referred to as syntrophin-associated STK (SAST), while MAST2 is also called MAST205. MAST kinases are cytoskeletal associated kinases of unknown function that a |
| >cd06632 STKc_MEKK1_plant Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1 | Back alignment and domain information |
|---|
Probab=99.05 E-value=8.6e-11 Score=124.06 Aligned_cols=122 Identities=20% Similarity=0.285 Sum_probs=82.7
Q ss_pred cccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCC-CCchhHHHHHHHHHHHHHhcCCCCCCCchh
Q 038019 644 NIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGH-LTEKADVFSFGVVALEIISGRASSDKSLDM 722 (866)
Q Consensus 644 ~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~-~t~ksDVySfGvvLlEl~tg~~p~~~~~~~ 722 (866)
|++...+...++.|||....+.... ......|+..|+|||+..... ++.++|||||||+++||++|+.|+......
T Consensus 132 ni~~~~~~~~kl~d~~~~~~~~~~~---~~~~~~~~~~y~~pe~~~~~~~~~~~~D~~slG~~l~~l~~g~~pf~~~~~~ 208 (258)
T cd06632 132 NILVDTNGVVKLADFGMAKQVVEFS---FAKSFKGSPYWMAPEVIAQQGGYGLAADIWSLGCTVLEMATGKPPWSQLEGV 208 (258)
T ss_pred HEEECCCCCEEEccCccceeccccc---cccccCCCcceeCHHHhcCCCCCCchhhhHHHHHHHHHHHhCCCCcccCcHH
Confidence 5565556667889999887765433 234456889999999987766 899999999999999999999998754321
Q ss_pred hhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 723 EKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 723 ~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
+........... +.+... ....+.++..+|++.+|++||+|.++++
T Consensus 209 ------~~~~~~~~~~~~-----~~~~~~---~~~~~~~li~~~l~~~p~~Rp~~~~~l~ 254 (258)
T cd06632 209 ------AAVFKIGRSKEL-----PPIPDH---LSDEAKDFILKCLQRDPSLRPTAAELLE 254 (258)
T ss_pred ------HHHHHHHhcccC-----CCcCCC---cCHHHHHHHHHHhhcCcccCcCHHHHhc
Confidence 111111110111 111111 1233445666999999999999999874
|
Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidops |
| >cd07870 STKc_PFTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-2 kinase | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.3e-10 Score=123.40 Aligned_cols=76 Identities=13% Similarity=0.186 Sum_probs=57.7
Q ss_pred CcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecC-CCCchhHHHHHHHHHHHHHhcCCCCCCCc
Q 038019 643 PNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRG-HLTEKADVFSFGVVALEIISGRASSDKSL 720 (866)
Q Consensus 643 ~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~-~~t~ksDVySfGvvLlEl~tg~~p~~~~~ 720 (866)
.|++...+...++.|||.++....... .+....++..|+|||+..+. .++.++|||||||+++||+||+.|++...
T Consensus 132 ~Nil~~~~~~~~l~Dfg~~~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~~l~~g~~~f~~~~ 208 (291)
T cd07870 132 QNLLISYLGELKLADFGLARAKSIPSQ--TYSSEVVTLWYRPPDVLLGATDYSSALDIWGAGCIFIEMLQGQPAFPGVS 208 (291)
T ss_pred HHEEEcCCCcEEEeccccccccCCCCC--CCCCccccccccCCceeecCCCCCcHHHHHHHHHHHHHHHhCCCCCCCch
Confidence 466666666778899998876543221 12233578899999998754 57899999999999999999999987543
|
Serine/Threonine Kinases (STKs), PFTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-2 is also referred to as ALS2CR7 (amyotrophic lateral sclerosis 2 (juvenile) chromosome region candidate 7). It may be associated with amyotrophic lateral sclerosis 2 (ALS2), an autosomal recess |
| >cd06626 STKc_MEKK4 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 4 | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.3e-10 Score=123.26 Aligned_cols=127 Identities=21% Similarity=0.259 Sum_probs=82.9
Q ss_pred cccCHHHHHHHhcCCccccccCCCCceeE--EEeecCCCCccCceeeecCC---CCchhHHHHHHHHHHHHHhcCCCCCC
Q 038019 644 NIFGYAELRSATKDFNRSNKLGEGGYGPV--YKVTANSYGYLAPEYAMRGH---LTEKADVFSFGVVALEIISGRASSDK 718 (866)
Q Consensus 644 ~~~~~~~~~~~~~dF~~~~~lg~g~~g~v--y~~~~gt~gY~aPE~~~~~~---~t~ksDVySfGvvLlEl~tg~~p~~~ 718 (866)
|++..++...++.|||.+..+........ ..+..++..|+|||+..... .+.++||||||++++|+++|+.|+..
T Consensus 129 nil~~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~~~~~PE~~~~~~~~~~~~~~Dv~s~G~il~~l~~g~~pf~~ 208 (264)
T cd06626 129 NIFLDHNGVIKLGDFGCAVKLKNNTTTMGEEVQSLAGTPAYMAPEVITGGKGKGHGRAADIWSLGCVVLEMATGKRPWSE 208 (264)
T ss_pred HEEECCCCCEEEcccccccccCCCCCcccccccCCcCCcCccChhhccCCCCCCCCcccchHHHHHHHHHHHhCCCCccC
Confidence 55555555677889998887764332111 22456889999999998766 89999999999999999999999864
Q ss_pred CchhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 719 SLDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 719 ~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
..... .. ...... + ..+.+.... .....+.++...|++.+|++||++.|++.
T Consensus 209 ~~~~~--~~---~~~~~~-~-----~~~~~~~~~-~~~~~~~~li~~~l~~~p~~R~~~~~i~~ 260 (264)
T cd06626 209 LDNEF--QI---MFHVGA-G-----HKPPIPDSL-QLSPEGKDFLDRCLESDPKKRPTASELLQ 260 (264)
T ss_pred CcchH--HH---HHHHhc-C-----CCCCCCccc-ccCHHHHHHHHHHccCCcccCCCHHHHhc
Confidence 32111 11 111110 1 112221111 11223445667999999999999999864
|
Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4 |
| >cd08227 PK_STRAD_alpha Pseudokinase domain of STE20-related kinase adapter protein alpha | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.2e-10 Score=125.89 Aligned_cols=43 Identities=23% Similarity=0.432 Sum_probs=37.8
Q ss_pred cCCCCccCceeeec--CCCCchhHHHHHHHHHHHHHhcCCCCCCC
Q 038019 677 ANSYGYLAPEYAMR--GHLTEKADVFSFGVVALEIISGRASSDKS 719 (866)
Q Consensus 677 ~gt~gY~aPE~~~~--~~~t~ksDVySfGvvLlEl~tg~~p~~~~ 719 (866)
.++..|+|||++.. ..++.++|||||||+++||++|+.|+...
T Consensus 169 ~~~~~y~aPE~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~ 213 (327)
T cd08227 169 VKVLPWLSPEVLQQNLQGYDAKSDIYSVGITACELANGHVPFKDM 213 (327)
T ss_pred cceecccChHHhhcccCCCCchhhHHHHHHHHHHHHHCCCCCCCc
Confidence 46778999999875 46899999999999999999999999753
|
Protein Kinase family, STE20-related kinase adapter protein (STRAD) alpha subfamily, pseudokinase domain. The STRAD alpha subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hype |
| >KOG0597 consensus Serine-threonine protein kinase FUSED [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.8e-10 Score=123.42 Aligned_cols=120 Identities=16% Similarity=0.202 Sum_probs=89.0
Q ss_pred CcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCCchh
Q 038019 643 PNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSLDM 722 (866)
Q Consensus 643 ~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~~ 722 (866)
-||+...-...|..|||+++..+.+. .|-..+.||+-|||||...++.|+..+|.||+||+|||+.+|++||...
T Consensus 129 qniLl~~~~~~KlcdFg~Ar~m~~~t--~vltsikGtPlYmAPElv~e~pyd~~sDlWslGcilYE~~~G~PPF~a~--- 203 (808)
T KOG0597|consen 129 QNILLEKGGTLKLCDFGLARAMSTNT--SVLTSIKGTPLYMAPELVEEQPYDHTSDLWSLGCILYELYVGQPPFYAR--- 203 (808)
T ss_pred ceeeecCCCceeechhhhhhhcccCc--eeeeeccCcccccCHHHHcCCCccchhhHHHHHHHHHHHhcCCCCchHH---
Confidence 37788888889999999999998864 6777889999999999999999999999999999999999999998632
Q ss_pred hhhcHHHHHHHHhhcCCcccccCCcc-cccCHHHHHHHHHHHHHccCCCCCCCCCHHHHH
Q 038019 723 EKIYLLEWAWNLHENNQSFGLVDPTL-TEFNDKEALRVIGVALLCTQTSPMMRPPMSRVV 781 (866)
Q Consensus 723 ~~~~l~~~~~~~~~~~~~~~~~d~~l-~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~ 781 (866)
....+++ .... ||.. +.....+...+++ --++.||.+|-++.+++
T Consensus 204 si~~Lv~---~I~~--------d~v~~p~~~S~~f~nfl~---gLL~kdP~~RltW~~Ll 249 (808)
T KOG0597|consen 204 SITQLVK---SILK--------DPVKPPSTASSSFVNFLQ---GLLIKDPAQRLTWTDLL 249 (808)
T ss_pred HHHHHHH---HHhc--------CCCCCcccccHHHHHHHH---HHhhcChhhcccHHHHh
Confidence 2223333 2221 2211 1111122333333 55789999999998875
|
|
| >cd07850 STKc_JNK Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.4e-10 Score=128.95 Aligned_cols=73 Identities=22% Similarity=0.226 Sum_probs=59.5
Q ss_pred cccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCC
Q 038019 644 NIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKS 719 (866)
Q Consensus 644 ~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~ 719 (866)
|++...+...++.|||.++.++.... .....++..|+|||...+..++.++|||||||+++||++|+.|+...
T Consensus 148 Nil~~~~~~~kL~Dfg~~~~~~~~~~---~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~~l~~g~~pf~~~ 220 (353)
T cd07850 148 NIVVKSDCTLKILDFGLARTAGTSFM---MTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIRGTVLFPGT 220 (353)
T ss_pred HEEECCCCCEEEccCccceeCCCCCC---CCCCcccccccCHHHHhCCCCCCchhhHhHHHHHHHHHHCCCCCCCC
Confidence 56666666778899999988765432 22335788999999999999999999999999999999999998654
|
Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase (JNK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. They are also essential regulators of physiological and pathological processes and are involved in the pathogenesis of several diseases such as diabetes, atherosclerosis, stroke, Parkinson's and Alzheimer's. Vetebrates harbor three different JNK |
| >cd05582 STKc_RSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, 90 kDa ribosomal protein S6 kinase | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.7e-11 Score=132.50 Aligned_cols=119 Identities=20% Similarity=0.190 Sum_probs=81.0
Q ss_pred CcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCCchh
Q 038019 643 PNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSLDM 722 (866)
Q Consensus 643 ~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~~ 722 (866)
.|++...+...++.|||.++....... ......||..|+|||+.....++.++|||||||+++||+||+.|+......
T Consensus 127 ~Nil~~~~~~~kL~Dfg~~~~~~~~~~--~~~~~~g~~~y~aPE~~~~~~~~~~~DiwslG~il~el~tg~~p~~~~~~~ 204 (318)
T cd05582 127 ENILLDEEGHIKLTDFGLSKESIDHEK--KAYSFCGTVEYMAPEVVNRRGHTQSADWWSFGVLMFEMLTGSLPFQGKDRK 204 (318)
T ss_pred HHeEECCCCcEEEeeccCCcccCCCCC--ceecccCChhhcCHHHHcCCCCCCccceeccceEeeeeccCCCCCCCCCHH
Confidence 366666666778899998876654321 122456899999999998888999999999999999999999999754322
Q ss_pred hhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHH
Q 038019 723 EKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSR 779 (866)
Q Consensus 723 ~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~ 779 (866)
+ ....+ .. ... .+...... .+.++...|++.||++||++.+
T Consensus 205 ~---~~~~i---~~-~~~------~~p~~~~~---~~~~li~~~l~~~P~~R~~a~~ 245 (318)
T cd05582 205 E---TMTMI---LK-AKL------GMPQFLSP---EAQSLLRALFKRNPANRLGAGP 245 (318)
T ss_pred H---HHHHH---Hc-CCC------CCCCCCCH---HHHHHHHHHhhcCHhHcCCCCC
Confidence 1 11111 11 110 11111122 3345556999999999999766
|
Serine/Threonine Kinases (STKs), 90 kDa ribosomal protein S6 kinase (RSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. RSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family. They are activated by signaling inputs from extracellular regulated kinase (ERK) and phosphoinositide dependent kinase 1 (PDK1). ERK phosphorylates and activates the CTD of RSK, serving as a docking site for PDK1, which phosphorylates and activates the NTD, which in turn phosphorylate |
| >cd06622 PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS2-like dual-specificity MAP kinase kinases | Back alignment and domain information |
|---|
Probab=99.04 E-value=1e-10 Score=125.71 Aligned_cols=123 Identities=22% Similarity=0.274 Sum_probs=79.7
Q ss_pred cccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCC------CCchhHHHHHHHHHHHHHhcCCCCC
Q 038019 644 NIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGH------LTEKADVFSFGVVALEIISGRASSD 717 (866)
Q Consensus 644 ~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~------~t~ksDVySfGvvLlEl~tg~~p~~ 717 (866)
|++...+...++.|||.+..+.... .+...++.+|+|||+..+.. ++.++|||||||+++||+||+.|+.
T Consensus 133 nil~~~~~~~~l~dfg~~~~~~~~~----~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~ 208 (286)
T cd06622 133 NVLVNGNGQVKLCDFGVSGNLVASL----AKTNIGCQSYMAPERIKSGGPNQNPTYTVQSDVWSLGLSILEMALGRYPYP 208 (286)
T ss_pred HEEECCCCCEEEeecCCcccccCCc----cccCCCccCccCcchhcCCCCCccCCCCcccchHhHHHHHHHHHhCCCCCC
Confidence 5555555566788999887664322 12235788999999986543 4889999999999999999999986
Q ss_pred CCchhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 718 KSLDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 718 ~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
...... ...-. .....+. .+.+ +.+....+.+++..|++.+|++||++.+++.
T Consensus 209 ~~~~~~---~~~~~-~~~~~~~-----~~~~---~~~~~~~~~~li~~~l~~~p~~Rp~~~~l~~ 261 (286)
T cd06622 209 PETYAN---IFAQL-SAIVDGD-----PPTL---PSGYSDDAQDFVAKCLNKIPNRRPTYAQLLE 261 (286)
T ss_pred Ccchhh---HHHHH-HHHhhcC-----CCCC---CcccCHHHHHHHHHHcccCcccCCCHHHHhc
Confidence 532211 11111 1111111 1111 1222334556667999999999999999875
|
Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal PBS2-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include |
| >cd06656 STKc_PAK3 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 3 | Back alignment and domain information |
|---|
Probab=99.04 E-value=9.1e-11 Score=127.04 Aligned_cols=124 Identities=17% Similarity=0.241 Sum_probs=82.4
Q ss_pred cccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCCchhh
Q 038019 644 NIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSLDME 723 (866)
Q Consensus 644 ~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~~~ 723 (866)
|++...+...++.|||.+..+...... .....++..|+|||+..+..++.++|||||||+++|++||+.|+.......
T Consensus 145 Nili~~~~~~~l~Dfg~~~~~~~~~~~--~~~~~~~~~y~aPE~~~~~~~~~~~Di~slGvil~~l~tg~~pf~~~~~~~ 222 (297)
T cd06656 145 NILLGMDGSVKLTDFGFCAQITPEQSK--RSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMVEGEPPYLNENPLR 222 (297)
T ss_pred HEEECCCCCEEECcCccceEccCCccC--cCcccCCccccCHHHHcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCcch
Confidence 566666666788999988776543211 112357889999999998899999999999999999999999986432211
Q ss_pred hhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 724 KIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 724 ~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
... .....+ .+.+ ..+......+.+++.+|++.+|++||+|.+|++
T Consensus 223 ~~~------~~~~~~------~~~~-~~~~~~~~~~~~li~~~l~~~p~~Rps~~~il~ 268 (297)
T cd06656 223 ALY------LIATNG------TPEL-QNPERLSAVFRDFLNRCLEMDVDRRGSAKELLQ 268 (297)
T ss_pred hee------eeccCC------CCCC-CCccccCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence 100 000000 0111 011111223445667999999999999999986
|
Serine/threonine kinases (STKs), p21-activated kinase (PAK) 3, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK3 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding |
| >cd06611 STKc_SLK_like Catalytic domain of Ste20-like kinase-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.04 E-value=2e-10 Score=123.04 Aligned_cols=125 Identities=21% Similarity=0.200 Sum_probs=80.4
Q ss_pred CcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeee-----cCCCCchhHHHHHHHHHHHHHhcCCCCC
Q 038019 643 PNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAM-----RGHLTEKADVFSFGVVALEIISGRASSD 717 (866)
Q Consensus 643 ~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~-----~~~~t~ksDVySfGvvLlEl~tg~~p~~ 717 (866)
.|++...+...++.|||.+..+.... .......|+..|+|||++. ...++.++|||||||++|||++|+.|+.
T Consensus 132 ~nili~~~~~~~l~d~g~~~~~~~~~--~~~~~~~~~~~y~~PE~~~~~~~~~~~~~~~sDi~slG~il~~l~~g~~p~~ 209 (280)
T cd06611 132 GNILLTLDGDVKLADFGVSAKNKSTL--QKRDTFIGTPYWMAPEVVACETFKDNPYDYKADIWSLGITLIELAQMEPPHH 209 (280)
T ss_pred hhEEECCCCCEEEccCccchhhcccc--cccceeecchhhcCHHHHhhcccCCCCCCccccHHHHHHHHHHHHhCCCCcc
Confidence 35565556667788998877654322 1223346899999999874 3457889999999999999999999987
Q ss_pred CCchhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 718 KSLDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 718 ~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
....... +. . ...+. .+.+. .+......+.++...|++.+|++||++.+|++
T Consensus 210 ~~~~~~~--~~----~-~~~~~-----~~~~~-~~~~~~~~~~~li~~~l~~~p~~Rps~~~il~ 261 (280)
T cd06611 210 ELNPMRV--LL----K-ILKSE-----PPTLD-QPSKWSSSFNDFLKSCLVKDPDDRPTAAELLK 261 (280)
T ss_pred cCCHHHH--HH----H-HhcCC-----CCCcC-CcccCCHHHHHHHHHHhccChhhCcCHHHHhc
Confidence 5432211 11 1 11111 11110 01111123455666999999999999999975
|
Serine/threonine kinases (STKs), Ste20-like kinase (SLK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of the subfamily include SLK, STK10 (also called LOK for lymphocyte-oriented kinase), SmSLK (Schistosoma mansoni SLK), and related proteins. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It also plays a role in mediating actin reorganization. STK10 is responsible in regulating the CD28 responsive element in T cells, as well as leukocyte function associated anti |
| >cd08216 PK_STRAD Pseudokinase domain of STE20-related kinase adapter protein | Back alignment and domain information |
|---|
Probab=99.04 E-value=3.9e-10 Score=123.06 Aligned_cols=138 Identities=19% Similarity=0.240 Sum_probs=83.4
Q ss_pred CcccCHHHHHHHhcCCccccccCCCCc-----eeEEEeecCCCCccCceeeec--CCCCchhHHHHHHHHHHHHHhcCCC
Q 038019 643 PNIFGYAELRSATKDFNRSNKLGEGGY-----GPVYKVTANSYGYLAPEYAMR--GHLTEKADVFSFGVVALEIISGRAS 715 (866)
Q Consensus 643 ~~~~~~~~~~~~~~dF~~~~~lg~g~~-----g~vy~~~~gt~gY~aPE~~~~--~~~t~ksDVySfGvvLlEl~tg~~p 715 (866)
.|++...+...++.||+.+..+-..+. ........++..|+|||++.. ..++.++|||||||+++||++|+.|
T Consensus 130 ~Nili~~~~~~kl~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Diws~G~il~el~~g~~p 209 (314)
T cd08216 130 SHILLSGDGKVVLSGLRYSVSMIKHGKRQRVVHDFPKSSVKNLPWLSPEVLQQNLQGYNEKSDIYSVGITACELANGHVP 209 (314)
T ss_pred ceEEEecCCceEEecCccceeeccccccccccccccccccccccccCHHHhcCCCCCCCcchhHHHHHHHHHHHHhCCCC
Confidence 466666666677888887765532221 111223457789999999865 4588999999999999999999999
Q ss_pred CCCCchhhhhcHHHHHHHHhh-----------cCCccc----ccCCccc-----ccCHHHHHHHHHHHHHccCCCCCCCC
Q 038019 716 SDKSLDMEKIYLLEWAWNLHE-----------NNQSFG----LVDPTLT-----EFNDKEALRVIGVALLCTQTSPMMRP 775 (866)
Q Consensus 716 ~~~~~~~~~~~l~~~~~~~~~-----------~~~~~~----~~d~~l~-----~~~~~~~~~~~~la~~C~~~~p~~RP 775 (866)
+....... .+.+....... .....+ ..++... .........+.+++..|++.+|++||
T Consensus 210 f~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rp 287 (314)
T cd08216 210 FKDMPATQ--MLLEKVRGTVPCLLDKSTYPLYEDSMSQSRSSNEHPNNRDSVDHPYTRTFSEHFHQFVELCLQRDPESRP 287 (314)
T ss_pred CCCCCHHH--HHHHHHhccCccccccCchhhhcCCcCcccccccccchhhhhhcchhhHHHHHHHHHHHHHhhcCCCcCc
Confidence 87543221 11211111000 000000 1111110 01111223566788899999999999
Q ss_pred CHHHHHH
Q 038019 776 PMSRVVA 782 (866)
Q Consensus 776 sm~~V~~ 782 (866)
+++++++
T Consensus 288 t~~~ll~ 294 (314)
T cd08216 288 SASQLLN 294 (314)
T ss_pred CHHHHhc
Confidence 9999875
|
Protein Kinase family, STE20-related kinase adapter protein (STRAD) subfamily, pseudokinase domain. The STRAD subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpigmentation of the buc |
| >cd07832 STKc_CCRK Catalytic domain of the Serine/Threonine Kinase, Cell Cycle-Related Kinase | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.3e-10 Score=124.91 Aligned_cols=135 Identities=15% Similarity=0.141 Sum_probs=84.9
Q ss_pred cccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecC-CCCchhHHHHHHHHHHHHHhcCCCCCCCchh
Q 038019 644 NIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRG-HLTEKADVFSFGVVALEIISGRASSDKSLDM 722 (866)
Q Consensus 644 ~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~-~~t~ksDVySfGvvLlEl~tg~~p~~~~~~~ 722 (866)
|++...+...++.|||.+..+..+.- ..+....|+..|+|||++.+. .++.++||||+|++++||+||+.++......
T Consensus 129 ni~~~~~~~~~l~dfg~~~~~~~~~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~~l~tg~~~~~~~~~~ 207 (286)
T cd07832 129 NLLISADGVLKIADFGLARLFSEEEP-RLYSHQVATRWYRAPELLYGARKYDPGVDLWAVGCIFAELLNGSPLFPGENDI 207 (286)
T ss_pred HEEEcCCCcEEEeeeeecccccCCCC-CccccccCcccccCceeeeccccCCchhHHHHHHHHHHHHHcCCcCcCCCCHH
Confidence 55555555667889998888765432 234455789999999998754 4689999999999999999998777643322
Q ss_pred hhhcHHHHHHHHhhcC------------CcccccCCcc-----cccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 723 EKIYLLEWAWNLHENN------------QSFGLVDPTL-----TEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 723 ~~~~l~~~~~~~~~~~------------~~~~~~d~~l-----~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
....++....... ....+..+.- .+...+....+.++..+|++.+|++||+++++++
T Consensus 208 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~R~~~~~~l~ 281 (286)
T cd07832 208 ---EQLAIVFRTLGTPNEETWPGLTSLPDYNKITFPESKPIPLEEIFPDASPEALDLLKGLLVYDPSKRLSAAEALR 281 (286)
T ss_pred ---HHHHHHHHHcCCCChHHHhhccCcchhhcccCCCCCcchHHHhCCCccHHHHHHHHHHhccChhhCCCHHHHhh
Confidence 1222222211100 0000100100 0000112245667777999999999999999975
|
Serine/Threonine Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CCRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CCRK was previously called p42. It is a Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK) which is essential for the activation of CDK2. It is indispensable for cell growth and has been implicated in the progression of glioblastoma multiforme. In the heart, a splice variant of CCRK with a different C-terminal half is expressed, this variant promotes cardiac cell growth and survival and is significantly down-regulated during the development of hea |
| >cd07864 STKc_CDK12 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12 | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.7e-10 Score=125.13 Aligned_cols=135 Identities=16% Similarity=0.127 Sum_probs=84.5
Q ss_pred cccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeec-CCCCchhHHHHHHHHHHHHHhcCCCCCCCchh
Q 038019 644 NIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMR-GHLTEKADVFSFGVVALEIISGRASSDKSLDM 722 (866)
Q Consensus 644 ~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~-~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~~ 722 (866)
+++..++...++.|||.++.+..+.. ..|.+..++..|+|||.... ...+.++|||||||+++||++|+.|+......
T Consensus 146 nili~~~~~~kl~dfg~~~~~~~~~~-~~~~~~~~~~~y~~PE~~~~~~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~ 224 (302)
T cd07864 146 NILLNNKGQIKLADFGLARLYNSEES-RPYTNKVITLWYRPPELLLGEERYGPAIDVWSCGCILGELFTKKPIFQANQEL 224 (302)
T ss_pred HEEECCCCcEEeCcccccccccCCcc-cccccceeccCccChHHhcCCCCCCchhHHHHHHHHHHHHHhCCCCCCCCChH
Confidence 55656666778899998887755432 33445567889999997754 45789999999999999999999998754322
Q ss_pred hhhcHHHHHHHHhhcC---Ccccc--------cCC------cccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 723 EKIYLLEWAWNLHENN---QSFGL--------VDP------TLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 723 ~~~~l~~~~~~~~~~~---~~~~~--------~d~------~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
+. .+-+....... ....+ .|+ ............+.++...|++.+|++||++.+|+.
T Consensus 225 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rp~~~~il~ 298 (302)
T cd07864 225 AQ---LELISRLCGSPCPAVWPDVIKLPYFNTMKPKKQYRRRLREEFSFIPTPALDLLDHMLTLDPSKRCTAEEALN 298 (302)
T ss_pred HH---HHHHHHHhCCCChhhcccccccccccccccccccccchhhhcCCCCHHHHHHHHHHccCChhhCCCHHHHhc
Confidence 21 11111111000 00000 010 000000011235667777999999999999999874
|
Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 12 (CDK12) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK12 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK12 is also called Cdc2-related protein kinase 7 (CRK7) or Cdc2-related kinase arginine/serine-rich (CrkRS). It is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 is widely |
| >KOG3653 consensus Transforming growth factor beta/activin receptor subfamily of serine/threonine kinases [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.1e-10 Score=122.44 Aligned_cols=155 Identities=17% Similarity=0.100 Sum_probs=99.5
Q ss_pred hhhhccCCCCCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecC------CCCchhHHHHHHHHH
Q 038019 633 EEVLVGIGSKPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRG------HLTEKADVFSFGVVA 706 (866)
Q Consensus 633 ~~~~~~~~~~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~------~~t~ksDVySfGvvL 706 (866)
..+.|+.....|++...|+...+.|||++.++.-|.--.-..+.+||.+|||||++.+. ..-.+.||||+|.||
T Consensus 335 p~IaHRDlkSkNVLvK~DlTccIaDFGLAl~~~p~~~~~d~~~qVGT~RYMAPEvLEgainl~d~~Afkr~DvYamgLVL 414 (534)
T KOG3653|consen 335 PPIAHRDLKSKNVLVKNDLTCCIADFGLALRLEPGKPQGDTHGQVGTRRYMAPEVLEGAINLQDRDAFKRIDVYAMGLVL 414 (534)
T ss_pred CccccccccccceEEccCCcEEeeccceeEEecCCCCCcchhhhhhhhhhcCHHHHhhhcccccHHHHHHHHHHHHHHHH
Confidence 34555555566999999999999999999988655433334457899999999988642 122468999999999
Q ss_pred HHHHhcCCCCCCCchhhhhcH----------HHHHHHHhhcCCcccccCCcccccCH--HHHHHHHHHHHHccCCCCCCC
Q 038019 707 LEIISGRASSDKSLDMEKIYL----------LEWAWNLHENNQSFGLVDPTLTEFND--KEALRVIGVALLCTQTSPMMR 774 (866)
Q Consensus 707 lEl~tg~~p~~~~~~~~~~~l----------~~~~~~~~~~~~~~~~~d~~l~~~~~--~~~~~~~~la~~C~~~~p~~R 774 (866)
|||+++-...++...++-+.- .+-.+... +.+-..|.+++... ..+..+.+..-.||..||+.|
T Consensus 415 WEi~SRC~~~~~~~vp~Yqlpfe~evG~hPt~e~mq~~V----V~kK~RP~~p~~W~~h~~~~~l~et~EeCWDhDaeAR 490 (534)
T KOG3653|consen 415 WEIASRCTDADPGPVPEYQLPFEAEVGNHPTLEEMQELV----VRKKQRPKIPDAWRKHAGMAVLCETIEECWDHDAEAR 490 (534)
T ss_pred HHHHhhcccccCCCCCcccCchhHHhcCCCCHHHHHHHH----HhhccCCCChhhhhcCccHHHHHHHHHHHcCCchhhh
Confidence 999997655432111110000 01111111 11223455532211 234445556779999999999
Q ss_pred CCHHHHHHHHhcCcCCC
Q 038019 775 PPMSRVVAMLAGDIEVG 791 (866)
Q Consensus 775 Psm~~V~~~L~~~~~~~ 791 (866)
-|..=|.+.+.......
T Consensus 491 LTA~Cv~eR~~~l~~~~ 507 (534)
T KOG3653|consen 491 LTAGCVEERMAELMMLW 507 (534)
T ss_pred hhhHHHHHHHHHHhccC
Confidence 99998888887655443
|
|
| >cd05046 PTK_CCK4 Pseudokinase domain of the Protein Tyrosine Kinase, Colon Carcinoma Kinase 4 | Back alignment and domain information |
|---|
Probab=99.02 E-value=5.8e-10 Score=119.13 Aligned_cols=130 Identities=22% Similarity=0.259 Sum_probs=85.4
Q ss_pred CCCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHh-cCCCCCCC
Q 038019 641 SKPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIIS-GRASSDKS 719 (866)
Q Consensus 641 ~~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~t-g~~p~~~~ 719 (866)
...|++..++...++.+|+.++......+ ..++...++..|+|||+...+..+.++|||||||+++|+++ |..|+...
T Consensus 144 kp~Nili~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~~l~~~~~~p~~~~ 222 (275)
T cd05046 144 AARNCLVSSQREVKVSLLSLSKDVYNSEY-YKLRNALIPLRWLAPEAVQEDDFSTKSDVWSFGVLMWEVFTQGELPFYGL 222 (275)
T ss_pred ccceEEEeCCCcEEEcccccccccCcccc-cccCCceeEEeecChhhhccCCCCchhhHHHHHHHHHHHHhCCCCCcccc
Confidence 33466666666666778887764432211 22334456778999999988889999999999999999999 77787543
Q ss_pred chhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHh
Q 038019 720 LDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLA 785 (866)
Q Consensus 720 ~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~ 785 (866)
... ..+.+ ...+...... + .. ....+.+++.+|++.+|++||++.|++++|.
T Consensus 223 ~~~---~~~~~----~~~~~~~~~~-~--~~----~~~~l~~~i~~~l~~~p~~Rp~~~~~l~~l~ 274 (275)
T cd05046 223 SDE---EVLNR----LQAGKLELPV-P--EG----CPSRLYKLMTRCWAVNPKDRPSFSELVSALG 274 (275)
T ss_pred chH---HHHHH----HHcCCcCCCC-C--CC----CCHHHHHHHHHHcCCCcccCCCHHHHHHHhc
Confidence 221 12221 1111111100 0 11 1234666777999999999999999999885
|
Protein Tyrosine Kinase (PTK) family; Colon Carcinoma Kinase 4 (CCK4); pseudokinase domain. The PTKc (catalytic domain) family, to which this subfamily belongs, includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CCK4, also called protein tyrosine kinase 7 (PTK7), is an orphan receptor tyr kinase (RTK) containing an extracellular region with seven immunoglobulin domains, a transmembrane segment, and an intracellular inactive pseudokinase domain. Studies in mice reveal that CCK4 is essential for neural development. Mouse embryos containing a truncated CCK4 die perinatally and display craniorachischisis, a severe form of neural tube defect. The mechanism of action of the CCK4 pseudokinase is s |
| >cd06614 STKc_PAK Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.4e-10 Score=122.97 Aligned_cols=124 Identities=18% Similarity=0.237 Sum_probs=81.2
Q ss_pred cccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCCchhh
Q 038019 644 NIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSLDME 723 (866)
Q Consensus 644 ~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~~~ 723 (866)
|++...+...++.||+....+..... ......++.+|++||+.....++.++|||||||+++||++|+.|+.......
T Consensus 146 ni~i~~~~~~~l~d~~~~~~~~~~~~--~~~~~~~~~~y~~PE~~~~~~~~~~~Dv~slGvil~~l~~g~~p~~~~~~~~ 223 (286)
T cd06614 146 NILLSKDGSVKLADFGFAAQLTKEKS--KRNSVVGTPYWMAPEVIKRKDYGPKVDIWSLGIMCIEMAEGEPPYLREPPLR 223 (286)
T ss_pred hEEEcCCCCEEECccchhhhhccchh--hhccccCCcccCCHhHhcCCCCCCccccHHHHHHHHHHHhCCCCCCCCCHHH
Confidence 55555555567788887765543321 1233457889999999988889999999999999999999999987543221
Q ss_pred hhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 724 KIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 724 ~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
. .. .... .......+ .......+.+++.+|++.+|.+||++.+|++
T Consensus 224 ~--~~----~~~~-~~~~~~~~------~~~~~~~l~~li~~~l~~~p~~Rpt~~~il~ 269 (286)
T cd06614 224 A--LF----LITT-KGIPPLKN------PEKWSPEFKDFLNKCLVKDPEKRPSAEELLQ 269 (286)
T ss_pred H--HH----HHHh-cCCCCCcc------hhhCCHHHHHHHHHHhccChhhCcCHHHHhh
Confidence 1 11 1111 11101100 0111234556677999999999999999975
|
Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two grou |
| >cd07855 STKc_ERK5 Catalytic domain of the Serine/Threonine Kinase, Extracellular signal-Regulated Kinase 5 | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.3e-10 Score=128.17 Aligned_cols=138 Identities=14% Similarity=0.153 Sum_probs=85.2
Q ss_pred CcccCHHHHHHHhcCCccccccCCCCce--eEEEeecCCCCccCceeeec-CCCCchhHHHHHHHHHHHHHhcCCCCCCC
Q 038019 643 PNIFGYAELRSATKDFNRSNKLGEGGYG--PVYKVTANSYGYLAPEYAMR-GHLTEKADVFSFGVVALEIISGRASSDKS 719 (866)
Q Consensus 643 ~~~~~~~~~~~~~~dF~~~~~lg~g~~g--~vy~~~~gt~gY~aPE~~~~-~~~t~ksDVySfGvvLlEl~tg~~p~~~~ 719 (866)
.|++..++...++.|||.++.+....-. ....+..|+..|+|||++.. ..++.++|||||||+++||++|+.|+...
T Consensus 136 ~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~~Di~slG~~l~el~~g~~pf~~~ 215 (334)
T cd07855 136 SNLLVNEDCELRIGDFGMARGLSSSPTEHKYFMTEYVATRWYRAPELLLSLPEYTTAIDMWSVGCIFAEMLGRRQLFPGK 215 (334)
T ss_pred HHEEEcCCCcEEecccccceeecccCcCCCcccccccccccccChHHhcCCcccccccchHHHHHHHHHHHcCCCccCCC
Confidence 3666666777789999988766432211 11123468899999998765 56899999999999999999999999754
Q ss_pred chhhhhcHHHHHHHHh-----------hcCCcccccC--Cccccc-----CHHHHHHHHHHHHHccCCCCCCCCCHHHHH
Q 038019 720 LDMEKIYLLEWAWNLH-----------ENNQSFGLVD--PTLTEF-----NDKEALRVIGVALLCTQTSPMMRPPMSRVV 781 (866)
Q Consensus 720 ~~~~~~~l~~~~~~~~-----------~~~~~~~~~d--~~l~~~-----~~~~~~~~~~la~~C~~~~p~~RPsm~~V~ 781 (866)
..... ...+.... ......+..+ +..... .......+.++...|++.+|++||++.+++
T Consensus 216 ~~~~~---~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~~l 292 (334)
T cd07855 216 NYVHQ---LKLILSVLGSPSEEVLNRIGSDRVRKYIQNLPRKQPVPWSKIFPKASPEALDLLSQMLQFDPEERITVEQAL 292 (334)
T ss_pred ChHHH---HHHHHHHhCCChhHhhhhhchhhHHHHHhhcccCCCCCHHHHcccCCHHHHHHHHHHccCChhhCcCHHHHH
Confidence 32211 11111100 0000000000 000001 111234566777799999999999999987
Q ss_pred HH
Q 038019 782 AM 783 (866)
Q Consensus 782 ~~ 783 (866)
..
T Consensus 293 ~~ 294 (334)
T cd07855 293 QH 294 (334)
T ss_pred hC
Confidence 63
|
Serine/Threonine Kinases (STKs), Extracellular signal-Regulated Kinase 5 (ERK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ERK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. ERK5, also called Big MAPK1 (BMK1) or MAPK7, has a unique C-terminal extension, making it approximately twice as big as other MAPKs. This extension contains transcriptional activation capability which is inhibited by the N-terminal half. ERK5 is activated in response to growth factors and stress by a cascade that leads to its phosphorylation by the |
| >cd05626 STKc_LATS2 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 2 | Back alignment and domain information |
|---|
Probab=99.02 E-value=4.8e-10 Score=125.96 Aligned_cols=97 Identities=23% Similarity=0.333 Sum_probs=62.6
Q ss_pred ecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCCchhhhhcHHHHHHHHhhcCCcccccCCcccccCHHH
Q 038019 676 TANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSLDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKE 755 (866)
Q Consensus 676 ~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~ 755 (866)
..||..|||||++....++.++|||||||+++||+||+.|+......+. . ......... ..-|...... .+
T Consensus 208 ~~gt~~Y~aPE~~~~~~~~~~~DiwSlG~il~elltG~~Pf~~~~~~~~---~---~~i~~~~~~--~~~~~~~~~s-~~ 278 (381)
T cd05626 208 LVGTPNYIAPEVLLRKGYTQLCDWWSVGVILFEMLVGQPPFLAPTPTET---Q---LKVINWENT--LHIPPQVKLS-PE 278 (381)
T ss_pred ccCCccccCHHHHcCCCCCCccceeehhhHHHHHHhCCCCCcCCCHHHH---H---HHHHccccc--cCCCCCCCCC-HH
Confidence 3699999999999988899999999999999999999999975433221 1 011110000 0001111122 23
Q ss_pred HHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 756 ALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 756 ~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
+..++.- +.|...++..||++.||++
T Consensus 279 ~~dli~~-ll~~~~~~~~R~~~~~~l~ 304 (381)
T cd05626 279 AVDLITK-LCCSAEERLGRNGADDIKA 304 (381)
T ss_pred HHHHHHH-HccCcccccCCCCHHHHhc
Confidence 3333331 2477788888999999975
|
Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. LATS2 is an essential mitotic regulator responsible for coordinating accurate cytokinesis completion and governing the stabilization of other mitotic regulators. It is also critical in the maintenance of proper chromosome number, genomic stability, mitotic fidelity, and the integrity of centrosome duplication. Downregulation of LATS2 is associated with po |
| >cd07843 STKc_CDC2L1 Catalytic domain of the Serine/Threonine Kinase, Cell Division Cycle 2-like 1 | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.8e-10 Score=122.82 Aligned_cols=137 Identities=13% Similarity=0.148 Sum_probs=84.1
Q ss_pred cccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecC-CCCchhHHHHHHHHHHHHHhcCCCCCCCchh
Q 038019 644 NIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRG-HLTEKADVFSFGVVALEIISGRASSDKSLDM 722 (866)
Q Consensus 644 ~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~-~~t~ksDVySfGvvLlEl~tg~~p~~~~~~~ 722 (866)
|++...+...++.|||.++.++... ..+....++..|+|||+..+. .++.++|||||||+++||++|+.|+......
T Consensus 136 nili~~~~~~~l~d~g~~~~~~~~~--~~~~~~~~~~~~~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~~f~~~~~~ 213 (293)
T cd07843 136 NLLLNNRGILKICDFGLAREYGSPL--KPYTQLVVTLWYRAPELLLGAKEYSTAIDMWSVGCIFAELLTKKPLFPGKSEI 213 (293)
T ss_pred HEEECCCCcEEEeecCceeeccCCc--cccccccccccccCchhhcCCccccchhhHHHHHHHHHHHHhCCCCCCCCChH
Confidence 5666666677889999888776532 223445678899999988654 4689999999999999999999998754332
Q ss_pred hhhc-HHHH-------HHHHhhc------CCcccccCCccc-ccCHH-HHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 723 EKIY-LLEW-------AWNLHEN------NQSFGLVDPTLT-EFNDK-EALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 723 ~~~~-l~~~-------~~~~~~~------~~~~~~~d~~l~-~~~~~-~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
+... +... .|..+.+ ....+.....+. .++.. ....+.+++..|++.+|++||++.||+.
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~R~t~~ell~ 289 (293)
T cd07843 214 DQLNKIFKLLGTPTEKIWPGFSELPGAKKKTFTKYPYNQLRKKFPALSLSDNGFDLLNRLLTYDPAKRISAEDALK 289 (293)
T ss_pred HHHHHHHHHhCCCchHHHHHhhccchhcccccccccchhhhccccccCCChHHHHHHHHHhccCccccCCHHHHhc
Confidence 2111 1000 0100000 000001111110 11111 1234556777999999999999999974
|
Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 1 (CDC2L1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L1, also called PITSLRE, exists in different isoforms which are named using the alias CDK11(p). The CDC2L1 gene produces two protein products, CDK11(p110) and CDK11(p58). CDC2L1 is also represented by the caspase-processed CDK11(p46). CDK11(p110), the |
| >cd06647 STKc_PAK_I Catalytic domain of the Protein Serine/Threonine Kinase, Group I p21-activated kinase | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.2e-10 Score=123.77 Aligned_cols=125 Identities=17% Similarity=0.224 Sum_probs=81.8
Q ss_pred cccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCCchhh
Q 038019 644 NIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSLDME 723 (866)
Q Consensus 644 ~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~~~ 723 (866)
|++...+...++.|||.+..+..... ......|+..|+|||+...+.++.++|||||||++||+++|+.|+.......
T Consensus 145 Nili~~~~~~kL~dfg~~~~~~~~~~--~~~~~~~~~~y~~PE~~~~~~~~~~~Dv~slG~ll~~ll~g~~pf~~~~~~~ 222 (293)
T cd06647 145 NILLGMDGSVKLTDFGFCAQITPEQS--KRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMVEGEPPYLNENPLR 222 (293)
T ss_pred HEEEcCCCCEEEccCcceeccccccc--ccccccCChhhcCchhhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCChhh
Confidence 44444444567889988776654322 1123358889999999988889999999999999999999999997543221
Q ss_pred hhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 038019 724 KIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAM 783 (866)
Q Consensus 724 ~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~ 783 (866)
.. ......+. +... ........+.+++..|++.+|++||++.+++.+
T Consensus 223 ~~------~~~~~~~~------~~~~-~~~~~~~~l~~li~~~l~~~p~~Rp~~~~il~h 269 (293)
T cd06647 223 AL------YLIATNGT------PELQ-NPEKLSAIFRDFLNRCLEMDVEKRGSAKELLQH 269 (293)
T ss_pred he------eehhcCCC------CCCC-CccccCHHHHHHHHHHccCChhhCcCHHHHhcC
Confidence 10 00000000 0010 011112235557779999999999999999864
|
Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group I, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAKs from higher eukaryotes are classified into two groups (I and II), according to their bi |
| >KOG0605 consensus NDR and related serine/threonine kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.02 E-value=8.5e-10 Score=119.87 Aligned_cols=91 Identities=19% Similarity=0.210 Sum_probs=63.5
Q ss_pred cCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCCchhh-hhcHHHHHHHHhhcCCcccccCCcccccCHHH
Q 038019 677 ANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSLDME-KIYLLEWAWNLHENNQSFGLVDPTLTEFNDKE 755 (866)
Q Consensus 677 ~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~ 755 (866)
+||+-|||||++.+..|+..+|.||+|||++||+.|-+||....+.+ ...++.|...... |.- ....++
T Consensus 349 VGTPDYiAPEVll~kgY~~~cDwWSLG~ImyEmLvGyPPF~s~tp~~T~rkI~nwr~~l~f---------P~~-~~~s~e 418 (550)
T KOG0605|consen 349 VGTPDYIAPEVLLGKGYGKECDWWSLGCIMYEMLVGYPPFCSETPQETYRKIVNWRETLKF---------PEE-VDLSDE 418 (550)
T ss_pred cCCccccchHHHhcCCCCccccHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhhhccC---------CCc-CcccHH
Confidence 79999999999999999999999999999999999999998765543 2345666433211 110 011134
Q ss_pred HHHHHHHHHHccCCCCCCCCC---HHHHH
Q 038019 756 ALRVIGVALLCTQTSPMMRPP---MSRVV 781 (866)
Q Consensus 756 ~~~~~~la~~C~~~~p~~RPs---m~~V~ 781 (866)
+.. ++.+|+. ||++|-. ..||-
T Consensus 419 A~D---LI~rll~-d~~~RLG~~G~~EIK 443 (550)
T KOG0605|consen 419 AKD---LITRLLC-DPENRLGSKGAEEIK 443 (550)
T ss_pred HHH---HHHHHhc-CHHHhcCcccHHHHh
Confidence 444 4445665 9999965 44443
|
|
| >cd07837 STKc_CdkB_plant Catalytic domain of the Serine/Threonine Kinase, Plant B-type Cyclin-Dependent protein Kinase | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.7e-10 Score=124.60 Aligned_cols=134 Identities=16% Similarity=0.172 Sum_probs=80.6
Q ss_pred cccCHH-HHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeec-CCCCchhHHHHHHHHHHHHHhcCCCCCCCch
Q 038019 644 NIFGYA-ELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMR-GHLTEKADVFSFGVVALEIISGRASSDKSLD 721 (866)
Q Consensus 644 ~~~~~~-~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~-~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~ 721 (866)
|++... ....++.|||.++.+.... ..|....+++.|+|||++.+ ..++.++|||||||+++||+||+.|+.....
T Consensus 140 nil~~~~~~~~kl~dfg~~~~~~~~~--~~~~~~~~~~~~~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~~~~~~~~ 217 (295)
T cd07837 140 NLLVDKQKGLLKIADLGLGRAFSIPV--KSYTHEIVTLWYRAPEVLLGSTHYSTPVDIWSVGCIFAEMSRKQPLFPGDSE 217 (295)
T ss_pred HEEEecCCCeEEEeecccceecCCCc--cccCCcccccCCCChHHhhCCCCCCchHHHHHHHHHHHHHHcCCCCCCCCCH
Confidence 555554 5567789999887654221 11233456889999998865 4579999999999999999999999865432
Q ss_pred hhhhcHHHHHHHHhhcCC---ccccc---C----Cc-----ccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 722 MEKIYLLEWAWNLHENNQ---SFGLV---D----PT-----LTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 722 ~~~~~l~~~~~~~~~~~~---~~~~~---d----~~-----l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
... +.+ +........ ..+.. + +. +....+....++.+++..|++.+|++||++.|++.
T Consensus 218 ~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~P~~R~~~~eil~ 290 (295)
T cd07837 218 LQQ--LLH-IFKLLGTPTEQVWPGVSKLRDWHEFPQWKPQDLSRAVPDLSPEGLDLLQKMLRYDPAKRISAKAALT 290 (295)
T ss_pred HHH--HHH-HHHHhCCCChhhCcchhhccchhhcCcccchhHHHhccccCHHHHHHHHHHccCChhhcCCHHHHhc
Confidence 211 110 001000000 00000 0 00 00000112234566778999999999999999874
|
Serine/Threonine Kinases (STKs), Plant B-type Cyclin-Dependent protein Kinase (CdkB) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CdkB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. The plant-specific B-type CDKs are expressed from the late S to the M phase of the cell cycle. They are characterized by the cyclin binding motif PPT[A/T]LRE. They play a role in controlling mitosis and integrating developm |
| >cd06634 STKc_TAO2 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 2 | Back alignment and domain information |
|---|
Probab=99.01 E-value=2.8e-10 Score=123.90 Aligned_cols=122 Identities=20% Similarity=0.262 Sum_probs=80.4
Q ss_pred CcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeee---cCCCCchhHHHHHHHHHHHHHhcCCCCCCC
Q 038019 643 PNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAM---RGHLTEKADVFSFGVVALEIISGRASSDKS 719 (866)
Q Consensus 643 ~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~---~~~~t~ksDVySfGvvLlEl~tg~~p~~~~ 719 (866)
.|++...+...++.|||.+..+... ....|+..|+|||+.. .+.++.++|||||||+++||++|+.|+...
T Consensus 144 ~nil~~~~~~~kl~dfg~~~~~~~~------~~~~~~~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~ 217 (308)
T cd06634 144 GNILLSEPGLVKLGDFGSASIMAPA------NXFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNM 217 (308)
T ss_pred HhEEECCCCcEEECCcccceeecCc------ccccCCccccCHHHHhhcccCCCCcccchHHHHHHHHHHHcCCCCCccc
Confidence 3555555566778899987765432 1235788999999874 467899999999999999999999997643
Q ss_pred chhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHH
Q 038019 720 LDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAML 784 (866)
Q Consensus 720 ~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L 784 (866)
...+ +..... .+.. +.... ......+.++..+|++.+|++||++.+|++.-
T Consensus 218 ~~~~------~~~~~~-~~~~-----~~~~~--~~~~~~~~~li~~cl~~~P~~Rp~~~~ll~~~ 268 (308)
T cd06634 218 NAMS------ALYHIA-QNES-----PALQS--GHWSEYFRNFVDSCLQKIPQDRPTSEVLLKHR 268 (308)
T ss_pred cHHH------HHHHHh-hcCC-----CCcCc--ccccHHHHHHHHHHhhCCcccCCCHHHHhhCc
Confidence 2211 111111 1111 11110 11123345566699999999999999998654
|
Serine/threonine kinases (STKs), thousand-and-one amino acids 2 (TAO2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Human TAO2 is also known as prostate-derived Ste20-like kinase (PSK) and was identified in a screen for overexpressed RNAs in prostate cancer. TAO2 activates both p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activatin |
| >KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.01 E-value=4.7e-11 Score=126.11 Aligned_cols=159 Identities=20% Similarity=0.158 Sum_probs=74.4
Q ss_pred CCCCcCEEeccCCcCCCCCC--ccccCCCCCCEeeccCCCCCCCC--chhhcCCCCccEEEeecCCCCCCChhh-hhcCc
Q 038019 111 NLSRLMFLSFSHNDFSGPVP--RELGNLKELTVLAFGTNNFSGAL--PPELGNLAKLEQLYIDSCGAGGEIPST-FAKLR 185 (866)
Q Consensus 111 ~l~~L~~L~Ls~N~l~~~~p--~~l~~l~~L~~L~Ls~N~l~~~~--p~~l~~l~~L~~L~L~~n~l~~~~p~~-~~~l~ 185 (866)
++.+|+...|.+..+. ..+ .....|++++.|||+.|-+.... ..-...|++|+.|+|+.|++....... -..++
T Consensus 119 n~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hHHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 4556666666665554 111 23445566666666666554321 122334556666666665553221111 11344
Q ss_pred CCCEEEecCCCCCCC-CcccccCCCCCCeEEccCCCCCCCCchhhcCCCCCCEEEccCccCCCCC-chhhhcCCCCCcee
Q 038019 186 NMQTLWASDNPFTGK-IPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLESLQMSDIYNVSSS-LDFVMSLKNLTDLS 263 (866)
Q Consensus 186 ~L~~L~L~~N~l~~~-~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~-~~~~~~l~~L~~L~ 263 (866)
+|+.|.|+.|.++-. +-..+..+++|+.|+|..|.....-......+..|+.|+|++|++.... ......++.|+.|+
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Ln 277 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLN 277 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhh
Confidence 555555555555421 2222334556666666665422222223333445555555555443222 23344455555555
Q ss_pred ccCcccc
Q 038019 264 LRNALIT 270 (866)
Q Consensus 264 L~~n~l~ 270 (866)
++.+.+.
T Consensus 278 ls~tgi~ 284 (505)
T KOG3207|consen 278 LSSTGIA 284 (505)
T ss_pred ccccCcc
Confidence 5555544
|
|
| >cd07845 STKc_CDK10 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 10 | Back alignment and domain information |
|---|
Probab=99.01 E-value=3.1e-10 Score=123.60 Aligned_cols=135 Identities=13% Similarity=0.145 Sum_probs=82.8
Q ss_pred cccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeec-CCCCchhHHHHHHHHHHHHHhcCCCCCCCchh
Q 038019 644 NIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMR-GHLTEKADVFSFGVVALEIISGRASSDKSLDM 722 (866)
Q Consensus 644 ~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~-~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~~ 722 (866)
|++...+...++.|||.++.++... ..+....++..|+|||...+ ..++.++|||||||+++||++|+.|+......
T Consensus 138 nil~~~~~~~kL~dfg~~~~~~~~~--~~~~~~~~~~~y~aPE~~~~~~~~~~~~DvwslG~il~el~~g~~~f~~~~~~ 215 (309)
T cd07845 138 NLLLTDKGCLKIADFGLARTYGLPA--KPMTPKVVTLWYRAPELLLGCTTYTTAIDMWAVGCILAELLAHKPLLPGKSEI 215 (309)
T ss_pred HEEECCCCCEEECccceeeecCCcc--CCCCcccccccccChhhhcCCCCcCchHHHHHHHHHHHHHHhCCCCCCCCCHH
Confidence 5555555567889999988776432 22233345788999998865 45799999999999999999999998754432
Q ss_pred hhhcHHHHHHHHhhc--CCc---------ccc--cCC-cccccC---HHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 038019 723 EKIYLLEWAWNLHEN--NQS---------FGL--VDP-TLTEFN---DKEALRVIGVALLCTQTSPMMRPPMSRVVAM 783 (866)
Q Consensus 723 ~~~~l~~~~~~~~~~--~~~---------~~~--~d~-~l~~~~---~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~ 783 (866)
+.. .-+...... ... ... +.. ...... ......+.++...|++.||++|||+.||++.
T Consensus 216 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ml~~dp~~R~t~~~il~h 290 (309)
T cd07845 216 EQL---DLIIQLLGTPNESIWPGFSDLPLVGKFTLPKQPYNNLKHKFPWLSEAGLRLLNFLLMYDPKKRATAEEALES 290 (309)
T ss_pred HHH---HHHHHhcCCCChhhchhhhcccccccccccCCCCCchHHhccccCHHHHHHHHHHhcCChhhCcCHHHHhcC
Confidence 211 111111100 000 000 000 000000 0012334567779999999999999999853
|
Serine/Threonine Kinases (STKs), Cyclin-dependent protein Kinase 10 (CDK10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK10, also called PISSLRE, is essential for cell growth and proliferation, and acts through the G2/M phase of the cell cycle. CDK10 has also been identified as an important factor in endocrine therapy resistance in breast cancer. CDK10 silencing |
| >KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.01 E-value=4.1e-11 Score=126.54 Aligned_cols=216 Identities=20% Similarity=0.188 Sum_probs=141.6
Q ss_pred cCCCCCCCEEEccCCCCCCCCC--ccccCCCCcCEEeccCCcCCCCC--CccccCCCCCCEeeccCCCCCCCCchh-hcC
Q 038019 85 LVTLQYLTVLKIDQNFFTGPLP--SFIGNLSRLMFLSFSHNDFSGPV--PRELGNLKELTVLAFGTNNFSGALPPE-LGN 159 (866)
Q Consensus 85 l~~l~~L~~L~Ls~n~l~~~~p--~~l~~l~~L~~L~Ls~N~l~~~~--p~~l~~l~~L~~L~Ls~N~l~~~~p~~-l~~ 159 (866)
=.++.+|+.+.|.+..+.. .+ .....|++++.|||+.|-|..-. -.-...|++|+.|+|+.|.+....... -..
T Consensus 117 Qsn~kkL~~IsLdn~~V~~-~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~ 195 (505)
T KOG3207|consen 117 QSNLKKLREISLDNYRVED-AGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLL 195 (505)
T ss_pred hhhHHhhhheeecCccccc-cchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhh
Confidence 3567889999999987753 23 35678999999999999887422 233567899999999999986433222 235
Q ss_pred CCCccEEEeecCCCCCC-ChhhhhcCcCCCEEEecCCCCCCCCcccccCCCCCCeEEccCCCCCCC-CchhhcCCCCCCE
Q 038019 160 LAKLEQLYIDSCGAGGE-IPSTFAKLRNMQTLWASDNPFTGKIPDFIGNWTKLKSLRFQGNSFQGP-IPSSLSKLASLES 237 (866)
Q Consensus 160 l~~L~~L~L~~n~l~~~-~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~-~p~~~~~l~~L~~ 237 (866)
+++|+.|.|+.|+++-. +-..+..+++|+.|+|..|..-..-.....-+..|+.|+|++|++... .-...+.++.|..
T Consensus 196 l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~ 275 (505)
T KOG3207|consen 196 LSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQ 275 (505)
T ss_pred hhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhh
Confidence 78999999999999843 334456789999999999953323333445567899999999988732 1256778899999
Q ss_pred EEccCccCCCCCchhhhcCCCCCceeccCcccccCCCcccCCCCCcCEEeeecCcCcc-cCCcccCCCCCCcEEECcCCC
Q 038019 238 LQMSDIYNVSSSLDFVMSLKNLTDLSLRNALITGTIPFGIGELQMLQILDLSFNNLTG-QIPATLFNIDSLEYLFLGNNS 316 (866)
Q Consensus 238 L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~-~~p~~l~~l~~L~~L~L~~N~ 316 (866)
|+++.+.+.+........ + .-...+++|+.|++..|++.. ..-..+..+++|+.|.+..|.
T Consensus 276 Lnls~tgi~si~~~d~~s------~------------~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ 337 (505)
T KOG3207|consen 276 LNLSSTGIASIAEPDVES------L------------DKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNY 337 (505)
T ss_pred hhccccCcchhcCCCccc------h------------hhhcccccceeeecccCccccccccchhhccchhhhhhccccc
Confidence 999887765443221100 0 001123444555555555431 111233445666666666666
Q ss_pred Ccc
Q 038019 317 LSG 319 (866)
Q Consensus 317 l~g 319 (866)
++.
T Consensus 338 ln~ 340 (505)
T KOG3207|consen 338 LNK 340 (505)
T ss_pred ccc
Confidence 653
|
|
| >cd06652 STKc_MEKK2 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 2 | Back alignment and domain information |
|---|
Probab=99.01 E-value=2e-10 Score=121.99 Aligned_cols=124 Identities=16% Similarity=0.195 Sum_probs=78.6
Q ss_pred cccCHHHHHHHhcCCccccccCCCCce-eEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCCchh
Q 038019 644 NIFGYAELRSATKDFNRSNKLGEGGYG-PVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSLDM 722 (866)
Q Consensus 644 ~~~~~~~~~~~~~dF~~~~~lg~g~~g-~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~~ 722 (866)
|++...+...++.|||.++.+...... .-+....|+..|+|||......++.++|||||||+++||++|+.|+......
T Consensus 136 nil~~~~~~~~l~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~ 215 (265)
T cd06652 136 NILRDSVGNVKLGDFGASKRLQTICLSGTGMKSVTGTPYWMSPEVISGEGYGRKADIWSVGCTVVEMLTEKPPWAEFEAM 215 (265)
T ss_pred HEEecCCCCEEECcCccccccccccccccccccCCCCccccChhhhcCCCCCcchhHHHHHHHHHHHhhCCCCCCccchH
Confidence 556555566788899988765321110 0122345889999999998888999999999999999999999998643211
Q ss_pred hhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 723 EKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 723 ~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
.. ....... ...+.. +......+..+...|+. +|++||+++||++
T Consensus 216 ~~------~~~~~~~-----~~~~~~---~~~~~~~~~~~i~~~l~-~p~~Rp~~~~il~ 260 (265)
T cd06652 216 AA------IFKIATQ-----PTNPVL---PPHVSDHCRDFLKRIFV-EAKLRPSADELLR 260 (265)
T ss_pred HH------HHHHhcC-----CCCCCC---chhhCHHHHHHHHHHhc-ChhhCCCHHHHhc
Confidence 10 1111100 011211 22222234444456774 8999999999875
|
Serine/threonine kinases (STKs), MAP/ERK kinase kinase 2 (MEKK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK2 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK2 also activates ERK1/2, c-Jun N-terminal kinase (JNK) and p38 through their re |
| >cd07844 STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.7e-10 Score=124.44 Aligned_cols=135 Identities=16% Similarity=0.155 Sum_probs=80.8
Q ss_pred cccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeec-CCCCchhHHHHHHHHHHHHHhcCCCCCCCchh
Q 038019 644 NIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMR-GHLTEKADVFSFGVVALEIISGRASSDKSLDM 722 (866)
Q Consensus 644 ~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~-~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~~ 722 (866)
|++...+...++.|||.++...... ..+....++..|+|||+..+ ..++.++|||||||+++||++|+.|+......
T Consensus 133 nil~~~~~~~kl~dfg~~~~~~~~~--~~~~~~~~~~~~~aPE~~~~~~~~~~~~Dv~slG~il~~l~~g~~~~~~~~~~ 210 (291)
T cd07844 133 NLLISERGELKLADFGLARAKSVPS--KTYSNEVVTLWYRPPDVLLGSTEYSTSLDMWGVGCIFYEMATGRPLFPGSTDV 210 (291)
T ss_pred HEEEcCCCCEEECccccccccCCCC--ccccccccccccCCcHHhhcCcccCcHHHHHHHHHHHHHHHhCCCCCCCCccH
Confidence 5666666667889999876553211 11222346789999998865 45899999999999999999999998644311
Q ss_pred hhhcHHHHHHHHhhc---CCccc-------------cc-CCccccc--CHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 723 EKIYLLEWAWNLHEN---NQSFG-------------LV-DPTLTEF--NDKEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 723 ~~~~l~~~~~~~~~~---~~~~~-------------~~-d~~l~~~--~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
. ......+..... ..... .. ...+... .......+.+++..|++.+|++||++.|+++
T Consensus 211 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~~p~~Rps~~e~l~ 287 (291)
T cd07844 211 E--DQLHKIFRVLGTPTEETWPGVSSNPEFKPYSFPFYPPRPLINHAPRLDRIPHGEELALKFLQYEPKKRISAAEAMK 287 (291)
T ss_pred H--HHHHHHHHhcCCCChhhhhhhhhccccccccccccCChhHHHhCcCCCCchhHHHHHHHHhccCcccccCHHHHhc
Confidence 1 111111111100 00000 00 0000000 0001145567788999999999999999864
|
Serine/Threonine Kinases (STKs), PCTAIRE-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily share sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. The association of PCTAIRE-like proteins with cyclins has not been widely studied, although PFTAIRE-1 has been shown to function as a CDK which is regulated by cyclin D3 as well as the |
| >cd05633 STKc_GRK3 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 3 | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.7e-10 Score=123.75 Aligned_cols=124 Identities=16% Similarity=0.141 Sum_probs=81.4
Q ss_pred CcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeec-CCCCchhHHHHHHHHHHHHHhcCCCCCCCch
Q 038019 643 PNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMR-GHLTEKADVFSFGVVALEIISGRASSDKSLD 721 (866)
Q Consensus 643 ~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~-~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~ 721 (866)
.|++..++...++.|||.+..++.... ....||.+|+|||.... ..++.++|||||||+++||+||+.|+.....
T Consensus 126 ~Nil~~~~~~~~l~dfg~~~~~~~~~~----~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~ 201 (279)
T cd05633 126 ANILLDEHGHVRISDLGLACDFSKKKP----HASVGTHGYMAPEVLQKGTAYDSSADWFSLGCMLFKLLRGHSPFRQHKT 201 (279)
T ss_pred HHEEECCCCCEEEccCCcceeccccCc----cCcCCCcCccCHHHhcCCCCCCchhhhHHHHHHHHHHHhCCCCcCCCCC
Confidence 356666666677899998876654322 22468999999998864 4589999999999999999999999875332
Q ss_pred hhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCC-----CHHHHHHH
Q 038019 722 MEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRP-----PMSRVVAM 783 (866)
Q Consensus 722 ~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RP-----sm~~V~~~ 783 (866)
.... ....... ..++.+.+.. ..++.++...|++.+|++|| +++|+++.
T Consensus 202 ~~~~----~~~~~~~------~~~~~~~~~~---~~~~~~li~~~l~~~p~~R~~~~~~~~~~~~~h 255 (279)
T cd05633 202 KDKH----EIDRMTL------TVNVELPDSF---SPELKSLLEGLLQRDVSKRLGCLGRGAQEVKEH 255 (279)
T ss_pred cCHH----HHHHHhh------cCCcCCcccc---CHHHHHHHHHHhcCCHHHhcCCCCCCHHHHHhC
Confidence 2111 1111110 1112221111 22344555699999999999 58887653
|
Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK3 (also known as beta-adrenergic receptor kinase 2) is wi |
| >cd07829 STKc_CDK_like Catalytic domain of Cyclin-Dependent protein Kinase-like Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.00 E-value=4.8e-10 Score=120.14 Aligned_cols=135 Identities=19% Similarity=0.228 Sum_probs=85.2
Q ss_pred CcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecC-CCCchhHHHHHHHHHHHHHhcCCCCCCCch
Q 038019 643 PNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRG-HLTEKADVFSFGVVALEIISGRASSDKSLD 721 (866)
Q Consensus 643 ~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~-~~t~ksDVySfGvvLlEl~tg~~p~~~~~~ 721 (866)
.|++..++...++.|||.++...... ..+....++..|+|||+..+. .++.++|||||||+++|+++|+.|+.....
T Consensus 127 ~ni~~~~~~~~~l~d~g~~~~~~~~~--~~~~~~~~~~~~~aPE~~~~~~~~~~~~Dv~slG~~l~~l~~~~~~~~~~~~ 204 (282)
T cd07829 127 QNILINRDGVLKLADFGLARAFGIPL--RTYTHEVVTLWYRAPEILLGSKHYSTAVDIWSVGCIFAEMITGKPLFPGDSE 204 (282)
T ss_pred heEEEcCCCCEEEecCCcccccCCCc--cccCccccCcCcCChHHhcCCcCCCccccHHHHHHHHHHHHhCCCCCCCccH
Confidence 35666666677888999887765432 234444567889999998766 889999999999999999999999865432
Q ss_pred hhhhcHHHHHHHHhhcC---C---cccc--cCCccccc--------CHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 722 MEKIYLLEWAWNLHENN---Q---SFGL--VDPTLTEF--------NDKEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 722 ~~~~~l~~~~~~~~~~~---~---~~~~--~d~~l~~~--------~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
.+ ...++....... . ..+. .+...... .......+.+++..|++.+|++||++.+|+.
T Consensus 205 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~P~~Rp~~~~~l~ 278 (282)
T cd07829 205 ID---QLFKIFQILGTPTEESWPGVTKLPDYKPTFPKFPPKDLEKVLPRLDPEGIDLLSKMLQYNPAKRISAKEALK 278 (282)
T ss_pred HH---HHHHHHHHhCCCcHHHHHhhcccccccccccccCccchHHhcccccHHHHHHHHHhhccCcccCCCHHHHhh
Confidence 21 111111111000 0 0000 01111000 0011235677888999999999999999875
|
Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase (CDK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKs are partly regulated by their subcellular localization, which defines substrate phosphorylation and the resulting specific function. CDK1, CDK2, CDK4, and CDK6 have well-defined functions in the cell cycle, such as the regulation of the |
| >cd07857 STKc_MPK1 Catalytic domain of the Serine/Threonine Kinase, Fungal Mitogen-Activated Protein Kinase MPK1 | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.6e-10 Score=127.34 Aligned_cols=139 Identities=13% Similarity=0.116 Sum_probs=82.4
Q ss_pred CcccCHHHHHHHhcCCccccccCCCCceeE--EEeecCCCCccCceeeec-CCCCchhHHHHHHHHHHHHHhcCCCCCCC
Q 038019 643 PNIFGYAELRSATKDFNRSNKLGEGGYGPV--YKVTANSYGYLAPEYAMR-GHLTEKADVFSFGVVALEIISGRASSDKS 719 (866)
Q Consensus 643 ~~~~~~~~~~~~~~dF~~~~~lg~g~~g~v--y~~~~gt~gY~aPE~~~~-~~~t~ksDVySfGvvLlEl~tg~~p~~~~ 719 (866)
.|++..++...++.|||.++.+..+....- -.+..||..|+|||+..+ ..++.++|||||||+++|+++|+.|+...
T Consensus 134 ~Nili~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~Di~slGv~l~~l~~g~~pf~~~ 213 (332)
T cd07857 134 GNLLVNADCELKICDFGLARGFSENPGENAGFMTEYVATRWYRAPEIMLSFQSYTKAIDVWSVGCILAELLGRKPVFKGK 213 (332)
T ss_pred HHeEEcCCCCEEeCcCCCceecccccccccccccCcccCccccCcHHHhCCCCCCcHHHHHHHHHHHHHHHhCCcCCCCC
Confidence 366666666678899999887654322100 112368899999998765 46899999999999999999999998653
Q ss_pred chhhhhcHH---------HHHHHHhhcCC------cccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHH
Q 038019 720 LDMEKIYLL---------EWAWNLHENNQ------SFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVV 781 (866)
Q Consensus 720 ~~~~~~~l~---------~~~~~~~~~~~------~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~ 781 (866)
......... ++......... ....-.+.+..........+.+++.+|++.+|++||++.|++
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~t~~~ll 290 (332)
T cd07857 214 DYVDQLNQILQVLGTPDEETLSRIGSPKAQNYIRSLPNIPKKPFESIFPNANPLALDLLEKLLAFDPTKRISVEEAL 290 (332)
T ss_pred CHHHHHHHHHHHhCCCCHHHHHhhhhhhHHHHHHhccccCCcchHhhCCCCCHHHHHHHHHHccCCcccCCCHHHHh
Confidence 321110000 00000000000 000000000000001123456677899999999999999986
|
Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) MPK1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MPK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs MPK1 from Saccharomyces cerevisiae, Pmk1 from Schizosaccharomyces pombe, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. MPK1 (also called Slt2) and Pmk1 (also called Spm1) are stress-activated MAPKs that regulate the cell wall integrity (CWI) pathway, and are therefore important in the maintainance of cell shape, cell wall co |
| >PHA03210 serine/threonine kinase US3; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=4.3e-10 Score=130.51 Aligned_cols=72 Identities=18% Similarity=0.195 Sum_probs=58.1
Q ss_pred CcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCC
Q 038019 643 PNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRAS 715 (866)
Q Consensus 643 ~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p 715 (866)
.|++...+...++.|||.++.+...... ...+..||..|+|||++.+..++.++|||||||++|||++|+.+
T Consensus 296 ~NILl~~~~~vkL~DFGla~~~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~ell~~~~~ 367 (501)
T PHA03210 296 ENIFLNCDGKIVLGDFGTAMPFEKEREA-FDYGWVGTVATNSPEILAGDGYCEITDIWSCGLILLDMLSHDFC 367 (501)
T ss_pred HHEEECCCCCEEEEeCCCceecCccccc-ccccccCCcCCCCchhhcCCCCCcHHHHHHHHHHHHHHHHCCCC
Confidence 3677766677889999999887654321 12245799999999999999999999999999999999998754
|
|
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
Probab=99.00 E-value=4e-10 Score=109.50 Aligned_cols=126 Identities=25% Similarity=0.293 Sum_probs=36.7
Q ss_pred CCCCcCEEeccCCcCCCCCCcccc-CCCCCCEeeccCCCCCCCCchhhcCCCCccEEEeecCCCCCCChhhhhcCcCCCE
Q 038019 111 NLSRLMFLSFSHNDFSGPVPRELG-NLKELTVLAFGTNNFSGALPPELGNLAKLEQLYIDSCGAGGEIPSTFAKLRNMQT 189 (866)
Q Consensus 111 ~l~~L~~L~Ls~N~l~~~~p~~l~-~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 189 (866)
+..++++|+|.+|.|+.+ +.++ .+.+|+.|+|++|.++.. +.+..+++|+.|++++|.++...+.....+++|++
T Consensus 17 n~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~ 92 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQE 92 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S-CHHHHHH-TT--E
T ss_pred cccccccccccccccccc--cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCccccchHHhCCcCCE
Confidence 344555555555555521 2343 345556666666655532 23555666666666666665433322234666666
Q ss_pred EEecCCCCCCCC-cccccCCCCCCeEEccCCCCCCCC---chhhcCCCCCCEEEc
Q 038019 190 LWASDNPFTGKI-PDFIGNWTKLKSLRFQGNSFQGPI---PSSLSKLASLESLQM 240 (866)
Q Consensus 190 L~L~~N~l~~~~-p~~l~~l~~L~~L~L~~N~l~~~~---p~~~~~l~~L~~L~l 240 (866)
|+|++|+|...- -..+..+++|+.|+|.+|.+.... ...+..+++|+.||-
T Consensus 93 L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 93 LYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp EE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred EECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence 666666665321 134556677777777777765331 123445566666553
|
|
| >KOG0593 consensus Predicted protein kinase KKIAMRE [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.5e-10 Score=116.72 Aligned_cols=144 Identities=17% Similarity=0.191 Sum_probs=99.8
Q ss_pred hccCCCCCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeec-CCCCchhHHHHHHHHHHHHHhcCC
Q 038019 636 LVGIGSKPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMR-GHLTEKADVFSFGVVALEIISGRA 714 (866)
Q Consensus 636 ~~~~~~~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~-~~~t~ksDVySfGvvLlEl~tg~~ 714 (866)
+++....-|++.......++.|||.++.|.. -|.+|.--+.|.-|.|||.+.+ .+|...+|||+.|||+.||+||.+
T Consensus 123 IHRDIKPENILit~~gvvKLCDFGFAR~L~~--pgd~YTDYVATRWYRaPELLvGDtqYG~pVDiWAiGCv~aEl~~G~p 200 (396)
T KOG0593|consen 123 IHRDIKPENILITQNGVVKLCDFGFARTLSA--PGDNYTDYVATRWYRAPELLVGDTQYGKPVDIWAIGCVFAELLTGEP 200 (396)
T ss_pred ecccCChhheEEecCCcEEeccchhhHhhcC--CcchhhhhhhhhhccChhhhcccCcCCCcccchhhhHHHHHHhcCCc
Confidence 3444444488888888999999999999974 3577888889999999998876 799999999999999999999998
Q ss_pred CCCCCchhhhhcHHHHHHH--------HhhcC-Cc-----ccccCCcc-cccCHHHHHHHHHHHHHccCCCCCCCCCHHH
Q 038019 715 SSDKSLDMEKIYLLEWAWN--------LHENN-QS-----FGLVDPTL-TEFNDKEALRVIGVALLCTQTSPMMRPPMSR 779 (866)
Q Consensus 715 p~~~~~~~~~~~l~~~~~~--------~~~~~-~~-----~~~~d~~l-~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~ 779 (866)
-+....+-+...++..... .+... .. .+.-++.- ..-.+....-+++++-.|++.||++|++-+|
T Consensus 201 L~PG~SDiDQLy~I~ktLG~L~prhq~iF~~N~~F~Gv~lP~~~~~epLe~k~p~~s~~~ld~~k~cL~~dP~~R~sc~q 280 (396)
T KOG0593|consen 201 LWPGRSDIDQLYLIRKTLGNLIPRHQSIFSSNPFFHGVRLPEPEHPEPLERKYPKISNVLLDLLKKCLKMDPDDRLSCEQ 280 (396)
T ss_pred CCCCcchHHHHHHHHHHHcccCHHHHHHhccCCceeeeecCCCCCccchhhhcccchHHHHHHHHHHhcCCccccccHHH
Confidence 7766555554444433321 11111 11 11111111 1111112224667888999999999999988
Q ss_pred HH
Q 038019 780 VV 781 (866)
Q Consensus 780 V~ 781 (866)
.+
T Consensus 281 ll 282 (396)
T KOG0593|consen 281 LL 282 (396)
T ss_pred Hh
Confidence 75
|
|
| >KOG0580 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.99 E-value=6.5e-10 Score=108.92 Aligned_cols=91 Identities=18% Similarity=0.234 Sum_probs=66.7
Q ss_pred cCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCCchhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHH
Q 038019 677 ANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSLDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEA 756 (866)
Q Consensus 677 ~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~ 756 (866)
+||.-|.+||...+...+.++|+|+.||+.+|++.|.+||......+ ....+. -.++.+|. ....
T Consensus 183 cgt~dyl~pEmv~~~~hd~~Vd~w~lgvl~yeflvg~ppFes~~~~e---tYkrI~-------k~~~~~p~---~is~-- 247 (281)
T KOG0580|consen 183 CGTLDYLPPEMVEGRGHDKFVDLWSLGVLCYEFLVGLPPFESQSHSE---TYKRIR-------KVDLKFPS---TISG-- 247 (281)
T ss_pred ecccccCCHhhcCCCCccchhhHHHHHHHHHHHHhcCCchhhhhhHH---HHHHHH-------HccccCCc---ccCh--
Confidence 69999999999999999999999999999999999999998654222 111111 11233331 1222
Q ss_pred HHHHHHHHHccCCCCCCCCCHHHHHHH
Q 038019 757 LRVIGVALLCTQTSPMMRPPMSRVVAM 783 (866)
Q Consensus 757 ~~~~~la~~C~~~~p~~RPsm~~V~~~ 783 (866)
.+.++...|...+|.+|.+..||+..
T Consensus 248 -~a~dlI~~ll~~~p~~r~~l~~v~~h 273 (281)
T KOG0580|consen 248 -GAADLISRLLVKNPIERLALTEVMDH 273 (281)
T ss_pred -hHHHHHHHHhccCccccccHHHHhhh
Confidence 33445668999999999999998753
|
|
| >PTZ00024 cyclin-dependent protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=3.6e-10 Score=124.60 Aligned_cols=136 Identities=17% Similarity=0.187 Sum_probs=83.8
Q ss_pred cccCHHHHHHHhcCCccccccCCCCce------------eEEEeecCCCCccCceeeecC-CCCchhHHHHHHHHHHHHH
Q 038019 644 NIFGYAELRSATKDFNRSNKLGEGGYG------------PVYKVTANSYGYLAPEYAMRG-HLTEKADVFSFGVVALEII 710 (866)
Q Consensus 644 ~~~~~~~~~~~~~dF~~~~~lg~g~~g------------~vy~~~~gt~gY~aPE~~~~~-~~t~ksDVySfGvvLlEl~ 710 (866)
|++...+...++.|||.++..+..++. ..+....++..|+|||++.+. .++.++|||||||+++||+
T Consensus 149 nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~el~ 228 (335)
T PTZ00024 149 NIFINSKGICKIADFGLARRYGYPPYSDTLSKDETMQRREEMTSKVVTLWYRAPELLMGAEKYHFAVDMWSVGCIFAELL 228 (335)
T ss_pred HeEECCCCCEEECCccceeecccccccccccccccccccccccccccccCCCCChhcccCCCCCcHHHHHHHHHHHHHHH
Confidence 555555556678899988877632221 111223467899999998754 4799999999999999999
Q ss_pred hcCCCCCCCchhhhhcHHHHHHHHhhcCC---ccc------------ccCCcccccCHHHHHHHHHHHHHccCCCCCCCC
Q 038019 711 SGRASSDKSLDMEKIYLLEWAWNLHENNQ---SFG------------LVDPTLTEFNDKEALRVIGVALLCTQTSPMMRP 775 (866)
Q Consensus 711 tg~~p~~~~~~~~~~~l~~~~~~~~~~~~---~~~------------~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RP 775 (866)
||+.|+......+ ....+........ ..+ ...+............+.++...|++.+|++||
T Consensus 229 tg~~p~~~~~~~~---~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~ 305 (335)
T PTZ00024 229 TGKPLFPGENEID---QLGRIFELLGTPNEDNWPQAKKLPLYTEFTPRKPKDLKTIFPNASDDAIDLLQSLLKLNPLERI 305 (335)
T ss_pred hCCCCCCCCCHHH---HHHHHHHHhCCCchhhCcchhhcccccccCcCCcccHHHhCcCCChHHHHHHHHHcCCCchhcc
Confidence 9999987543322 2222222111100 000 000111000111123456777899999999999
Q ss_pred CHHHHHH
Q 038019 776 PMSRVVA 782 (866)
Q Consensus 776 sm~~V~~ 782 (866)
++.||+.
T Consensus 306 s~~~~l~ 312 (335)
T PTZ00024 306 SAKEALK 312 (335)
T ss_pred CHHHHhc
Confidence 9999985
|
|
| >KOG2345 consensus Serine/threonine protein kinase/TGF-beta stimulated factor [Transcription; Lipid transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.2e-10 Score=112.67 Aligned_cols=129 Identities=15% Similarity=0.183 Sum_probs=84.8
Q ss_pred CCCCcccCHHHHHHHhcCCccccccCCCCceeEEEe------------ecCCCCccCceeee---cCCCCchhHHHHHHH
Q 038019 640 GSKPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKV------------TANSYGYLAPEYAM---RGHLTEKADVFSFGV 704 (866)
Q Consensus 640 ~~~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~------------~~gt~gY~aPE~~~---~~~~t~ksDVySfGv 704 (866)
....|++.-++...++.|||......- --++ ..-|.-|.|||.+. +..+++|+||||+||
T Consensus 155 iKP~NILls~~~~~vl~D~GS~~~a~i-----~i~~~~~a~~lQe~a~e~Ct~pyRAPELf~vk~~~ti~ertDIWSLGC 229 (302)
T KOG2345|consen 155 IKPANILLSDSGLPVLMDLGSATQAPI-----QIEGSRQALRLQEWAEERCTIPYRAPELFNVKSHCTITERTDIWSLGC 229 (302)
T ss_pred CCcceeEecCCCceEEEeccCccccce-----EeechHHHHHHHHHHHHhCCCcccCchheecccCcccccccchhhhhH
Confidence 344477666667777888876654320 0011 13578999999876 457899999999999
Q ss_pred HHHHHHhcCCCCCCCchhhhhcHHHHHHHHhhcCCcccccCCcc--cccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 705 VALEIISGRASSDKSLDMEKIYLLEWAWNLHENNQSFGLVDPTL--TEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 705 vLlEl~tg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l--~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
+||+|+.|..||+.....+. .+ ...+..+.+ +... .-.+.+.++.-+|++.||.+||+..+++.
T Consensus 230 tLYa~mf~~sPfe~~~~~Gg-Sl------------aLAv~n~q~s~P~~~-~yse~l~~lik~mlqvdP~qRP~i~~ll~ 295 (302)
T KOG2345|consen 230 TLYAMMFGESPFERIYQQGG-SL------------ALAVQNAQISIPNSS-RYSEALHQLIKSMLQVDPNQRPTIPELLS 295 (302)
T ss_pred HHHHHHHcCCcchHHhhcCC-eE------------EEeeeccccccCCCC-CccHHHHHHHHHHhcCCcccCCCHHHHHH
Confidence 99999999999985432110 10 112223222 1111 12334555666999999999999999999
Q ss_pred HHhcC
Q 038019 783 MLAGD 787 (866)
Q Consensus 783 ~L~~~ 787 (866)
.++..
T Consensus 296 ~~d~L 300 (302)
T KOG2345|consen 296 KLDDL 300 (302)
T ss_pred HHHhh
Confidence 88754
|
|
| >cd07851 STKc_p38 Catalytic domain of the Serine/Threonine Kinase, p38 Mitogen-Activated Protein Kinase | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.5e-10 Score=127.98 Aligned_cols=131 Identities=18% Similarity=0.205 Sum_probs=82.6
Q ss_pred cccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeec-CCCCchhHHHHHHHHHHHHHhcCCCCCCCchh
Q 038019 644 NIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMR-GHLTEKADVFSFGVVALEIISGRASSDKSLDM 722 (866)
Q Consensus 644 ~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~-~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~~ 722 (866)
|++...+...++.|||.+..+..+ ..+..++..|+|||.... ..++.++|||||||+++|++||+.|+......
T Consensus 148 Nill~~~~~~kL~dfg~~~~~~~~-----~~~~~~~~~y~aPE~~~~~~~~~~~~DvwslGv~l~elltg~~pf~~~~~~ 222 (343)
T cd07851 148 NIAVNEDCELKILDFGLARHTDDE-----MTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGKTLFPGSDHI 222 (343)
T ss_pred HeEECCCCCEEEcccccccccccc-----ccCCcccccccCHHHHhCCCCCCchHhHHHHHHHHHHHHhCCCCCCCCChH
Confidence 556655666788999998877543 233457889999998765 46889999999999999999999998654322
Q ss_pred hhhcHHHHHHHHhh-----------cCCccccc-------CCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 723 EKIYLLEWAWNLHE-----------NNQSFGLV-------DPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 723 ~~~~l~~~~~~~~~-----------~~~~~~~~-------d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
+. +........ .......+ .+...+........+.+++..|++.+|++|||+.||++
T Consensus 223 ~~---~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~l~dli~~~l~~~P~~Rpt~~ell~ 297 (343)
T cd07851 223 DQ---LKRIMNLVGTPDEELLQKISSESARNYIQSLPQMPKKDFKEVFSGANPLAIDLLEKMLVLDPDKRITAAEALA 297 (343)
T ss_pred HH---HHHHHHhcCCCCHHHHhhccchhHHHHHHhccccCCCCHHHHhccCCHHHHHHHHHhCCCChhhCCCHHHHhc
Confidence 11 111111000 00000000 00000000111345667888999999999999999864
|
Serine/Threonine Kinases (STKs), p38 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They function in the regulation of the cell cycle, cell development, cell differentiation, senescence, tumorigenesis, apoptosis, pain development and pain progression, and immune responses. p38 kinases are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK |
| >cd05597 STKc_DMPK_like Catalytic domain of Myotonic Dystrophy protein kinase-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=98.99 E-value=7.5e-10 Score=121.86 Aligned_cols=131 Identities=20% Similarity=0.280 Sum_probs=80.9
Q ss_pred CcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeee-----cCCCCchhHHHHHHHHHHHHHhcCCCCC
Q 038019 643 PNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAM-----RGHLTEKADVFSFGVVALEIISGRASSD 717 (866)
Q Consensus 643 ~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~-----~~~~t~ksDVySfGvvLlEl~tg~~p~~ 717 (866)
.|++...+...++.|||.+..+..++... .....||++|||||++. .+.++.++|||||||+++||++|+.|+.
T Consensus 131 ~Nill~~~~~~kl~Dfg~~~~~~~~~~~~-~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwslG~~l~el~~g~~Pf~ 209 (331)
T cd05597 131 DNVLLDKNGHIRLADFGSCLRLLADGTVQ-SNVAVGTPDYISPEILQAMEDGKGRYGPECDWWSLGVCMYEMLYGETPFY 209 (331)
T ss_pred HHEEECCCCCEEEEECCceeecCCCCCcc-ccceeccccccCHHHHhhccccccCCCCcceeehhhhHHHHHhhCCCCCC
Confidence 36666666677889999987776543321 12235899999999986 3568899999999999999999999987
Q ss_pred CCchhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 038019 718 KSLDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAM 783 (866)
Q Consensus 718 ~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~ 783 (866)
..... +............. +.+.... ..+++..+++- +.|...++..||++.++++.
T Consensus 210 ~~~~~------~~~~~i~~~~~~~~-~~~~~~~-~~~~~~~li~~-ll~~~~~r~~r~~~~~~l~h 266 (331)
T cd05597 210 AESLV------ETYGKIMNHKEHFQ-FPPDVTD-VSEEAKDLIRR-LICSPETRLGRNGLQDFKDH 266 (331)
T ss_pred CCCHH------HHHHHHHcCCCccc-CCCccCC-CCHHHHHHHHH-HccCcccccCCCCHHHHhcC
Confidence 53221 11111111111111 1111111 22344455442 34666666678999888754
|
Serine/Threonine Kinases (STKs), Myotonic Dystrophy protein kinase (DMPK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The DMPK-like subfamily is composed of DMPK and DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK). Three isoforms of MRCK are known, named alpha, beta and gamma. The DMPK gene is implicated in myotonic dystrophy 1 (DM1), an inherited multisystemic disorder with symptoms that include muscle hyperexcitability, progressive muscle weakness and wasting, cataract development, testicular atrophy, |
| >cd07834 STKc_MAPK Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase | Back alignment and domain information |
|---|
Probab=98.98 E-value=4.2e-10 Score=123.79 Aligned_cols=137 Identities=14% Similarity=0.140 Sum_probs=87.1
Q ss_pred cccCHHHHHHHhcCCccccccCCCCce-eEEEeecCCCCccCceeeecC-CCCchhHHHHHHHHHHHHHhcCCCCCCCch
Q 038019 644 NIFGYAELRSATKDFNRSNKLGEGGYG-PVYKVTANSYGYLAPEYAMRG-HLTEKADVFSFGVVALEIISGRASSDKSLD 721 (866)
Q Consensus 644 ~~~~~~~~~~~~~dF~~~~~lg~g~~g-~vy~~~~gt~gY~aPE~~~~~-~~t~ksDVySfGvvLlEl~tg~~p~~~~~~ 721 (866)
|++...+...++.|||.+.....+.-. .......++..|+|||++... .++.++||||||++++||++|+.|+.....
T Consensus 133 nili~~~~~~~L~dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~sDi~slG~il~~l~~g~~pf~~~~~ 212 (330)
T cd07834 133 NILVNSNCDLKICDFGLARGVDPDEDEKGFLTEYVVTRWYRAPELLLSSSRYTKAIDIWSVGCIFAELLTRKPLFPGRDY 212 (330)
T ss_pred HEEEcCCCCEEEcccCceEeecccccccccccccccccCcCCceeeecccCCCcchhHHHHHHHHHHHHcCCCCcCCCCH
Confidence 667776777888999988877654210 112334578899999999887 899999999999999999999999875443
Q ss_pred hhhhcHHHHHHHHhh-----------cCCcccccC---Cc----ccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 038019 722 MEKIYLLEWAWNLHE-----------NNQSFGLVD---PT----LTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAM 783 (866)
Q Consensus 722 ~~~~~l~~~~~~~~~-----------~~~~~~~~d---~~----l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~ 783 (866)
.+. ...+..... .....+.+. +. +..........+.++..+|++.+|++||++.++++.
T Consensus 213 ~~~---~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~ll~~ 289 (330)
T cd07834 213 IDQ---LNLIVEVLGTPSEEDLKFITSEKARNYLKSLPKKPKKPLSKLFPGASPEAIDLLEKMLVFDPKKRITADEALAH 289 (330)
T ss_pred HHH---HHHHHHhcCCCChhHhhhccccchhhHHhhcccCCcchhHHhcccCCHHHHHHHHHHccCChhhCCCHHHHHhC
Confidence 221 111111100 000000000 00 000011112345667789999999999999999863
|
Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Typical MAPK pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and |
| >cd05611 STKc_Rim15_like Catalytic domain of fungal Rim15-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.7e-10 Score=122.16 Aligned_cols=124 Identities=16% Similarity=0.069 Sum_probs=82.8
Q ss_pred cccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCCchhh
Q 038019 644 NIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSLDME 723 (866)
Q Consensus 644 ~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~~~ 723 (866)
|++..++...++.|||.++..... ....|+..|+|||+..+..++.++||||||++++||+||+.|+.......
T Consensus 127 nil~~~~~~~~l~dfg~~~~~~~~------~~~~~~~~y~~pe~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~ 200 (260)
T cd05611 127 NLLIDQTGHLKLTDFGLSRNGLEN------KKFVGTPDYLAPETILGVGDDKMSDWWSLGCVIFEFLFGYPPFHAETPDA 200 (260)
T ss_pred HeEECCCCcEEEeecccceecccc------ccCCCCcCccChhhhcCCCCcchhhhHHHHHHHHHHHHCCCCCCCCCHHH
Confidence 556555556778899887765431 12357889999999988889999999999999999999999987543221
Q ss_pred hhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHh
Q 038019 724 KIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLA 785 (866)
Q Consensus 724 ~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~ 785 (866)
. . .....+... ..+.... .....+.+++..|++.+|++||++.++.+.|.
T Consensus 201 ---~---~-~~~~~~~~~--~~~~~~~---~~~~~~~~~i~~~l~~~p~~R~~~~~~~~~l~ 250 (260)
T cd05611 201 ---V---F-DNILSRRIN--WPEEVKE---FCSPEAVDLINRLLCMDPAKRLGANGYQEIKS 250 (260)
T ss_pred ---H---H-HHHHhcccC--CCCcccc---cCCHHHHHHHHHHccCCHHHccCCCcHHHHHc
Confidence 1 1 111111110 0111111 11234556667999999999999887777665
|
Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, fungal Rim15-like kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include Saccharomyces cerevisiae Rim15, Schizosaccharomyces pombe cek1, and similar fungal proteins. They contain a central catalytic domain, which contains an insert relative to MAST kinases. In addition, Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. Rim15 (or Rim15p) functions as a regulator of meiosis. It acts as a do |
| >cd05596 STKc_ROCK Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase | Back alignment and domain information |
|---|
Probab=98.98 E-value=2e-10 Score=128.44 Aligned_cols=129 Identities=16% Similarity=0.182 Sum_probs=83.2
Q ss_pred CCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeec----CCCCchhHHHHHHHHHHHHHhcCCCCC
Q 038019 642 KPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMR----GHLTEKADVFSFGVVALEIISGRASSD 717 (866)
Q Consensus 642 ~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~----~~~t~ksDVySfGvvLlEl~tg~~p~~ 717 (866)
..|++...+...++.|||.+..+...+.. ......||+.|||||.+.. +.++.++|||||||+++||+||+.|+.
T Consensus 170 p~NILl~~~~~~kL~DfG~~~~~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~DiwSlGvilyelltG~~Pf~ 248 (370)
T cd05596 170 PDNMLLDKSGHLKLADFGTCMKMDANGMV-RCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEMLVGDTPFY 248 (370)
T ss_pred HHHEEEcCCCCEEEEeccceeeccCCCcc-cCCCCCCCcCeECHHHhccCCCCCCCCCceeeeehhHHHHHHHhCCCCcC
Confidence 34677777778889999998877644321 1223469999999998764 348899999999999999999999987
Q ss_pred CCchhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCC--CCCHHHHHHH
Q 038019 718 KSLDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMM--RPPMSRVVAM 783 (866)
Q Consensus 718 ~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~--RPsm~~V~~~ 783 (866)
...... .. ........ ....|.-... ..+ +.++...|++.+|++ ||++.|+++.
T Consensus 249 ~~~~~~---~~---~~i~~~~~--~~~~~~~~~~-s~~---~~~li~~~L~~~p~r~~R~s~~ell~h 304 (370)
T cd05596 249 ADSLVG---TY---SKIMDHKN--SLTFPDDIEI-SKQ---AKDLICAFLTDREVRLGRNGVDEIKSH 304 (370)
T ss_pred CCCHHH---HH---HHHHcCCC--cCCCCCcCCC-CHH---HHHHHHHHccChhhccCCCCHHHHhcC
Confidence 543211 11 11111100 0111110011 223 344555889888887 9999998653
|
Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK is also referred to as Rho-associated kinase or simply as Rho kinase. It contains an N-terminal extension, a catalytic kinase domain, and a long C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain. It is activated via in |
| >PHA03390 pk1 serine/threonine-protein kinase 1; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.7e-10 Score=121.32 Aligned_cols=120 Identities=15% Similarity=0.207 Sum_probs=79.9
Q ss_pred cccCHHHH-HHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCCchh
Q 038019 644 NIFGYAEL-RSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSLDM 722 (866)
Q Consensus 644 ~~~~~~~~-~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~~ 722 (866)
|++...+. ..++.|||.++.++... ...|+..|+|||+.....++.++|||||||+++||++|+.|+.....
T Consensus 139 nil~~~~~~~~~l~dfg~~~~~~~~~------~~~~~~~y~aPE~~~~~~~~~~~DvwslG~il~~l~~g~~p~~~~~~- 211 (267)
T PHA03390 139 NVLYDRAKDRIYLCDYGLCKIIGTPS------CYDGTLDYFSPEKIKGHNYDVSFDWWAVGVLTYELLTGKHPFKEDED- 211 (267)
T ss_pred HEEEeCCCCeEEEecCccceecCCCc------cCCCCCcccChhhhcCCCCCchhhHHHHHHHHHHHHHCCCCCCCCCc-
Confidence 44444444 56678999888776432 23578999999999988999999999999999999999999974332
Q ss_pred hhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCC-HHHHH
Q 038019 723 EKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPP-MSRVV 781 (866)
Q Consensus 723 ~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPs-m~~V~ 781 (866)
+......|..... .. . +... .....+.++...|++.+|.+||+ +.|++
T Consensus 212 ~~~~~~~~~~~~~--~~---~--~~~~----~~~~~~~~li~~~l~~~p~~R~~~~~~~l 260 (267)
T PHA03390 212 EELDLESLLKRQQ--KK---L--PFIK----NVSKNANDFVQSMLKYNINYRLTNYNEII 260 (267)
T ss_pred chhhHHHHHHhhc--cc---C--Cccc----ccCHHHHHHHHHHhccChhhCCchHHHHh
Confidence 2222333332211 00 0 0011 11223445556999999999995 68776
|
|
| >smart00220 S_TKc Serine/Threonine protein kinases, catalytic domain | Back alignment and domain information |
|---|
Probab=98.97 E-value=2e-10 Score=119.61 Aligned_cols=124 Identities=18% Similarity=0.203 Sum_probs=85.4
Q ss_pred cccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCCchhh
Q 038019 644 NIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSLDME 723 (866)
Q Consensus 644 ~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~~~ 723 (866)
+++...+...++.||+.+..+..+. ......++..|++||......++.++||||||++++|+++|+.|++.....
T Consensus 117 ni~~~~~~~~~l~d~~~~~~~~~~~---~~~~~~~~~~~~~pE~~~~~~~~~~~Di~slG~~l~~l~~~~~p~~~~~~~- 192 (244)
T smart00220 117 NILLDEDGHVKLADFGLARQLDPGG---LLTTFVGTPEYMAPEVLLGKGYGKAVDVWSLGVILYELLTGKPPFPGDDQL- 192 (244)
T ss_pred HeEECCCCcEEEccccceeeecccc---ccccccCCcCCCCHHHHccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCcH-
Confidence 5555555566788999888876542 334456889999999999889999999999999999999999998653211
Q ss_pred hhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 724 KIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 724 ~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
..+.++.. .+... .. ........++.+++.+|+..+|++||++.++++
T Consensus 193 -~~~~~~~~----~~~~~----~~--~~~~~~~~~~~~~i~~~l~~~p~~Rp~~~~~~~ 240 (244)
T smart00220 193 -LELFKKIG----KPKPP----FP--PPEWKISPEAKDLIRKLLVKDPEKRLTAEEALQ 240 (244)
T ss_pred -HHHHHHHh----ccCCC----Cc--cccccCCHHHHHHHHHHccCCchhccCHHHHhh
Confidence 11222211 11110 00 000002245667788999999999999999986
|
Phosphotransferases. Serine or threonine-specific kinase subfamily. |
| >KOG4645 consensus MAPKKK (MAP kinase kinase kinase) SSK2 and related serine/threonine protein kinases [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.97 E-value=8.8e-11 Score=138.71 Aligned_cols=133 Identities=21% Similarity=0.258 Sum_probs=88.6
Q ss_pred hhccCCCCCcccCHHHHHHHhcCCccccccCCCC--ceeEEEeecCCCCccCceeeecCC---CCchhHHHHHHHHHHHH
Q 038019 635 VLVGIGSKPNIFGYAELRSATKDFNRSNKLGEGG--YGPVYKVTANSYGYLAPEYAMRGH---LTEKADVFSFGVVALEI 709 (866)
Q Consensus 635 ~~~~~~~~~~~~~~~~~~~~~~dF~~~~~lg~g~--~g~vy~~~~gt~gY~aPE~~~~~~---~t~ksDVySfGvvLlEl 709 (866)
+.++..+..|+|++.....|..|||.+..|.... ++.--++.+||+-|||||.+.+.+ ---..||||+|||++||
T Consensus 1355 IVHRDIK~aNI~Ld~~g~iK~~DFGsa~ki~~~~~~~~~el~~~~GT~~YMAPEvit~t~~kG~~~A~DiWslGCVVlEM 1434 (1509)
T KOG4645|consen 1355 IVHRDIKPANILLDFNGLIKYGDFGSAVKIKNNAQTMPGELQSMMGTPMYMAPEVITGTKGKGHGGAADIWSLGCVVLEM 1434 (1509)
T ss_pred ceecCCCccceeeecCCcEEeecccceeEecCchhcCCHHHHhhcCCchhcCchhhcccccCCCCcchhhhcccceEEEe
Confidence 3344455568888888888999999998886431 111123568999999999987533 33578999999999999
Q ss_pred HhcCCCCCCCchhhhhcHHHHHHHH-hhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 710 ISGRASSDKSLDMEKIYLLEWAWNL-HENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 710 ~tg~~p~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
+|||+|+..... +|+... ...|.. |.+++--..+-..+++ +|++.||++|.+..|+++
T Consensus 1435 ~tGkrPW~~~dn-------e~aIMy~V~~gh~-----Pq~P~~ls~~g~dFle---~Cl~~dP~~Rw~~~qlle 1493 (1509)
T KOG4645|consen 1435 ATGKRPWAELDN-------EWAIMYHVAAGHK-----PQIPERLSSEGRDFLE---HCLEQDPKMRWTASQLLE 1493 (1509)
T ss_pred ecCCCchhhccc-------hhHHHhHHhccCC-----CCCchhhhHhHHHHHH---HHHhcCchhhhHHHHHHH
Confidence 999999874322 344322 122322 3332222233444555 899999999977665543
|
|
| >cd08222 STKc_Nek11 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 11 | Back alignment and domain information |
|---|
Probab=98.97 E-value=6.3e-10 Score=117.76 Aligned_cols=114 Identities=17% Similarity=0.232 Sum_probs=77.3
Q ss_pred HHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCCchhhhhcHHHHH
Q 038019 652 RSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSLDMEKIYLLEWA 731 (866)
Q Consensus 652 ~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~~~~~~l~~~~ 731 (866)
..++.|||.++.+.... .......|+..|+|||+.....++.++||||||++++||++|+.|+.... ..+..
T Consensus 143 ~~~l~d~g~~~~~~~~~--~~~~~~~~~~~~~~pe~~~~~~~~~~~Dv~slG~~~~~l~~~~~~~~~~~------~~~~~ 214 (260)
T cd08222 143 LLKIGDFGVSRLLMGSC--DLATTFTGTPYYMSPEALKHQGYDSKSDIWSLGCILYEMCCLAHAFEGQN------FLSVV 214 (260)
T ss_pred CEeecccCceeecCCCc--ccccCCCCCcCccCHHHHccCCCCchhhHHHHHHHHHHHHhCCCCCCCcc------HHHHH
Confidence 35778898877664322 12223457889999999888889999999999999999999999986422 11111
Q ss_pred HHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 732 WNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 732 ~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
..... + ..+.. +......+.+++.+|++.+|++||++.|+++
T Consensus 215 ~~~~~-~-----~~~~~---~~~~~~~~~~li~~~l~~~p~~Rp~~~~il~ 256 (260)
T cd08222 215 LRIVE-G-----PTPSL---PETYSRQLNSIMQSMLNKDPSLRPSAAEILR 256 (260)
T ss_pred HHHHc-C-----CCCCC---cchhcHHHHHHHHHHhcCChhhCcCHHHHhh
Confidence 11111 1 11222 1122234556677999999999999999975
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 11 (Nek11) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek11 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek11 is involved, through direct phosphorylation, in regulating the degradation of Cdc25A (Cell Division Cycle 25 homolog A), which plays a role in cell cycle progression and in activating cyclin dependent kinases. Nek11 is activated by CHK1 (CHeckpoint Kinase 1) and may be involved in the G2/M check |
| >cd06657 STKc_PAK4 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 4 | Back alignment and domain information |
|---|
Probab=98.96 E-value=3e-10 Score=122.59 Aligned_cols=124 Identities=17% Similarity=0.254 Sum_probs=81.9
Q ss_pred cccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCCchhh
Q 038019 644 NIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSLDME 723 (866)
Q Consensus 644 ~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~~~ 723 (866)
|++..++...++.|||.+..+.... .......|+.+|+|||+..+..++.++|||||||+++||++|+.|+......+
T Consensus 146 Nilv~~~~~~~l~dfg~~~~~~~~~--~~~~~~~~~~~y~~pE~~~~~~~~~~~Dv~slGvil~el~tg~~p~~~~~~~~ 223 (292)
T cd06657 146 SILLTHDGRVKLSDFGFCAQVSKEV--PRRKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLK 223 (292)
T ss_pred HEEECCCCCEEEcccccceeccccc--ccccccccCccccCHHHhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHH
Confidence 5666555566788999877664322 11233468899999999988889999999999999999999999986433221
Q ss_pred hhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 724 KIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 724 ~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
........ ..+.+... ......+.++..+|++.+|.+||++.+|++
T Consensus 224 ---~~~~~~~~---------~~~~~~~~-~~~~~~l~~li~~~l~~~P~~R~~~~~ll~ 269 (292)
T cd06657 224 ---AMKMIRDN---------LPPKLKNL-HKVSPSLKGFLDRLLVRDPAQRATAAELLK 269 (292)
T ss_pred ---HHHHHHhh---------CCcccCCc-ccCCHHHHHHHHHHHhCCcccCcCHHHHhc
Confidence 11111111 11111110 011123445566999999999999999876
|
Serine/threonine kinases (STKs), p21-activated kinase (PAK) 4, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK4 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK4 regulates cell mo |
| >cd07856 STKc_Sty1_Hog1 Catalytic domain of the Serine/Threonine Kinases, Fungal Mitogen-Activated Protein Kinases Sty1 and Hog1 | Back alignment and domain information |
|---|
Probab=98.95 E-value=6.2e-10 Score=122.30 Aligned_cols=134 Identities=13% Similarity=0.117 Sum_probs=81.2
Q ss_pred cccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeec-CCCCchhHHHHHHHHHHHHHhcCCCCCCCchh
Q 038019 644 NIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMR-GHLTEKADVFSFGVVALEIISGRASSDKSLDM 722 (866)
Q Consensus 644 ~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~-~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~~ 722 (866)
|++..++...++.|||.++.+.... .+..++..|+|||++.+ ..++.++|||||||+++||+||+.|+......
T Consensus 138 Nili~~~~~~~l~dfg~~~~~~~~~-----~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~el~tg~~~f~~~~~~ 212 (328)
T cd07856 138 NILINENCDLKICDFGLARIQDPQM-----TGYVSTRYYRAPEIMLTWQKYDVEVDIWSAGCIFAEMLEGKPLFPGKDHV 212 (328)
T ss_pred HEeECCCCCEEeCccccccccCCCc-----CCCcccccccCceeeeccCCcCcHHHHHHHHHHHHHHHhCCCCCCCCCHH
Confidence 4555555566788999887654322 12346789999998766 57899999999999999999999998654332
Q ss_pred hhhc-HHH--------HHHHHhhcCCcccccCC-cc-cccCH-----HHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 038019 723 EKIY-LLE--------WAWNLHENNQSFGLVDP-TL-TEFND-----KEALRVIGVALLCTQTSPMMRPPMSRVVAM 783 (866)
Q Consensus 723 ~~~~-l~~--------~~~~~~~~~~~~~~~d~-~l-~~~~~-----~~~~~~~~la~~C~~~~p~~RPsm~~V~~~ 783 (866)
.... +.+ |...... +...+.+.. .. ...+. .....+.+++.+|++.+|++||++.+++..
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~t~~ell~~ 288 (328)
T cd07856 213 NQFSIITDLLGTPPDDVINTICS-ENTLRFVQSLPKREPVPFSEKFKNADPSAIDLLEKMLVFDPQKRISAAEALAH 288 (328)
T ss_pred HHHHHHHHHhCCCCHHHHHhccc-hhhHHHHhhccccCCCcHHHHcCCCCHHHHHHHHHHcCCChhhCCCHHHHhcC
Confidence 1111 111 1111000 000000000 00 00011 112456667779999999999999998653
|
Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) Sty1/Hog1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sty1/Hog1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs Sty1 from Schizosaccharomyces pombe, Hog1 from Saccharomyces cerevisiae, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. Sty1 and Hog1 are stress-activated MAPKs that partipate in transcriptional regulation in response to stress. Sty1 is activated in response to oxidative stress, osmotic stress, and U |
| >KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.2e-09 Score=119.43 Aligned_cols=133 Identities=20% Similarity=0.189 Sum_probs=87.1
Q ss_pred hhccCCCCCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeee-----cCCCCchhHHHHHHHHHHHH
Q 038019 635 VLVGIGSKPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAM-----RGHLTEKADVFSFGVVALEI 709 (866)
Q Consensus 635 ~~~~~~~~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~-----~~~~t~ksDVySfGvvLlEl 709 (866)
+++......||+..-|...++.|||.+...-.-- .-.....||+.|||||+.+ ...|+.|+|||||||.|.||
T Consensus 151 iIHRDLKAGNiL~TldGdirLADFGVSAKn~~t~--qkRDsFIGTPYWMAPEVvmCET~KD~PYDykaDiWSlGITLIEM 228 (1187)
T KOG0579|consen 151 IIHRDLKAGNILLTLDGDIRLADFGVSAKNKSTR--QKRDSFIGTPYWMAPEVVMCETFKDQPYDYKADIWSLGITLIEM 228 (1187)
T ss_pred hhhhhccccceEEEecCcEeeecccccccchhHH--hhhccccCCcccccchheeeccccCCCchhhhhHHhhhhHHHHH
Confidence 4444445567877778888899999876553210 0011237999999999876 45789999999999999999
Q ss_pred HhcCCCCCCCchhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 710 ISGRASSDKSLDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 710 ~tg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
.-+.+|.....++.. +. . +. +--.|.|. .+......+-++.-.|+..+|+.||+..++++
T Consensus 229 AqiEPPHhelnpMRV--ll----K-ia-----KSePPTLl-qPS~Ws~~F~DfLk~cL~Knp~~Rp~aaqll~ 288 (1187)
T KOG0579|consen 229 AQIEPPHHELNPMRV--LL----K-IA-----KSEPPTLL-QPSHWSRSFSDFLKRCLVKNPRNRPPAAQLLK 288 (1187)
T ss_pred hccCCCccccchHHH--HH----H-Hh-----hcCCCccc-CcchhhhHHHHHHHHHHhcCCccCCCHHHHhh
Confidence 999999775544332 11 1 11 11123331 11122233334444899999999999988764
|
|
| >cd08215 STKc_Nek Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase | Back alignment and domain information |
|---|
Probab=98.95 E-value=2.7e-10 Score=119.98 Aligned_cols=122 Identities=21% Similarity=0.266 Sum_probs=83.5
Q ss_pred cccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCCchhh
Q 038019 644 NIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSLDME 723 (866)
Q Consensus 644 ~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~~~ 723 (866)
|++...+...++.||+.+...+... .+.....|+..|+|||+.....++.++||||||++++||++|+.|++.....
T Consensus 133 nil~~~~~~~~l~d~~~~~~~~~~~--~~~~~~~~~~~y~~pe~~~~~~~~~~~Dv~slG~~~~~l~~g~~p~~~~~~~- 209 (258)
T cd08215 133 NIFLTSNGLVKLGDFGISKVLSSTV--DLAKTVVGTPYYLSPELCQNKPYNYKSDIWSLGCVLYELCTLKHPFEGENLL- 209 (258)
T ss_pred HeEEcCCCcEEECCccceeecccCc--ceecceeeeecccChhHhccCCCCccccHHHHHHHHHHHHcCCCCCCCCcHH-
Confidence 4555555566788999888776543 2223346788999999998889999999999999999999999998754321
Q ss_pred hhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 724 KIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 724 ~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
+....... .. .+.+.. .....+.+++.+|+..+|++||++.||++
T Consensus 210 -----~~~~~~~~-~~-----~~~~~~---~~~~~~~~~i~~~l~~~p~~Rp~~~~ll~ 254 (258)
T cd08215 210 -----ELALKILK-GQ-----YPPIPS---QYSSELRNLVSSLLQKDPEERPSIAQILQ 254 (258)
T ss_pred -----HHHHHHhc-CC-----CCCCCC---CCCHHHHHHHHHHcCCChhhCcCHHHHhc
Confidence 11111111 11 111111 11234556677999999999999999875
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They |
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
Probab=98.95 E-value=4.5e-10 Score=109.13 Aligned_cols=129 Identities=24% Similarity=0.278 Sum_probs=50.1
Q ss_pred cCCCCCCCEEEccCCCCCCCCCcccc-CCCCcCEEeccCCcCCCCCCccccCCCCCCEeeccCCCCCCCCchhh-cCCCC
Q 038019 85 LVTLQYLTVLKIDQNFFTGPLPSFIG-NLSRLMFLSFSHNDFSGPVPRELGNLKELTVLAFGTNNFSGALPPEL-GNLAK 162 (866)
Q Consensus 85 l~~l~~L~~L~Ls~n~l~~~~p~~l~-~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l-~~l~~ 162 (866)
+.+...+++|+|.+|.|+. + ..++ .+.+|+.|+|++|.|+.. +.+..++.|++|++++|.++.. ...+ ..+++
T Consensus 15 ~~n~~~~~~L~L~~n~I~~-I-e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i-~~~l~~~lp~ 89 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQIST-I-ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSI-SEGLDKNLPN 89 (175)
T ss_dssp -----------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S--CHHHHHH-TT
T ss_pred ccccccccccccccccccc-c-cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCcc-ccchHHhCCc
Confidence 4455568888888888874 3 2355 577888888888888743 2577788888888888888854 3344 46888
Q ss_pred ccEEEeecCCCCCC-ChhhhhcCcCCCEEEecCCCCCCCC---cccccCCCCCCeEEccC
Q 038019 163 LEQLYIDSCGAGGE-IPSTFAKLRNMQTLWASDNPFTGKI---PDFIGNWTKLKSLRFQG 218 (866)
Q Consensus 163 L~~L~L~~n~l~~~-~p~~~~~l~~L~~L~L~~N~l~~~~---p~~l~~l~~L~~L~L~~ 218 (866)
|++|+|++|++... .-..+..+++|+.|+|.+|.++... ...+..+|+|+.||-..
T Consensus 90 L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 90 LQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQD 149 (175)
T ss_dssp --EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEE
T ss_pred CCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEE
Confidence 88888888888653 2256778889999999999887431 12456788888887654
|
|
| >KOG1006 consensus Mitogen-activated protein kinase (MAPK) kinase MKK4 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.94 E-value=9.3e-11 Score=116.10 Aligned_cols=134 Identities=19% Similarity=0.213 Sum_probs=90.3
Q ss_pred hhhccCCCCCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeee-cC-CCCchhHHHHHHHHHHHHHh
Q 038019 634 EVLVGIGSKPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAM-RG-HLTEKADVFSFGVVALEIIS 711 (866)
Q Consensus 634 ~~~~~~~~~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~-~~-~~t~ksDVySfGvvLlEl~t 711 (866)
+++++.....||+.+.....++.|||+.-.+-. .+. -...+|...|||||.+. .+ .+.-+|||||+||.|+|+.|
T Consensus 188 kiIHRDvKPSNILldr~G~vKLCDFGIcGqLv~-SiA--kT~daGCrpYmAPERi~p~~~gyDiRSDvWSLGITL~EvAt 264 (361)
T KOG1006|consen 188 KIIHRDVKPSNILLDRHGDVKLCDFGICGQLVD-SIA--KTVDAGCRPYMAPERIDPSDKGYDIRSDVWSLGITLYEVAT 264 (361)
T ss_pred hhhhccCChhheEEecCCCEeeecccchHhHHH-HHH--hhhccCCccccChhccCCccCCcchhhhhhhhcceEeeeec
Confidence 455566666799999999999999998765532 221 12247889999999886 33 49999999999999999999
Q ss_pred cCCCCCCCchhhhhcHHHHHHHHhhcCCcccccCCcccccCHH---HHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 712 GRASSDKSLDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDK---EALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 712 g~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~---~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
|+.|+.... ++.+.+..... -||.+-..+.+ -...+.+..-.|+-.|..+||...++.+
T Consensus 265 G~fPyr~w~-----svfeql~~Vv~-------gdpp~l~~~~~~~~~s~~~~~fintCl~Kd~~~Rpky~~Lk~ 326 (361)
T KOG1006|consen 265 GNFPYRKWD-----SVFEQLCQVVI-------GDPPILLFDKECVHYSFSMVRFINTCLIKDRSDRPKYDDLKK 326 (361)
T ss_pred CCCCcchHH-----HHHHHHHHHHc-------CCCCeecCcccccccCHHHHHHHHHHhhcccccCcchhhhhc
Confidence 999987422 12232322221 23333111111 2234555556899999999999887653
|
|
| >cd06627 STKc_Cdc7_like Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=98.94 E-value=4.2e-10 Score=118.37 Aligned_cols=122 Identities=19% Similarity=0.280 Sum_probs=83.2
Q ss_pred cccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCCchhh
Q 038019 644 NIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSLDME 723 (866)
Q Consensus 644 ~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~~~ 723 (866)
|++...+...++.||+.+..+..+.. ......++..|+|||+..+..++.++||||+|++++||++|+.|+.......
T Consensus 129 ni~i~~~~~~~l~d~~~~~~~~~~~~--~~~~~~~~~~y~~pe~~~~~~~~~~~Dv~~lG~~l~~l~~g~~p~~~~~~~~ 206 (254)
T cd06627 129 NILTTKDGVVKLADFGVATKLNDVSK--DDASVVGTPYWMAPEVIEMSGASTASDIWSLGCTVIELLTGNPPYYDLNPMA 206 (254)
T ss_pred HEEECCCCCEEEeccccceecCCCcc--cccccccchhhcCHhhhcCCCCCcchhHHHHHHHHHHHHhCCCCCCCccHHH
Confidence 55555555667889998888765432 1334568899999999988889999999999999999999999986432111
Q ss_pred hhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 724 KIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 724 ~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
..|. ... . ..+.+.... ...+..++.+|++.+|++||+|.+++.
T Consensus 207 ----~~~~--~~~-~-----~~~~~~~~~---~~~~~~~i~~~l~~~p~~R~~~~~~l~ 250 (254)
T cd06627 207 ----ALFR--IVQ-D-----DHPPLPEGI---SPELKDFLMQCFQKDPNLRPTAKQLLK 250 (254)
T ss_pred ----HHHH--Hhc-c-----CCCCCCCCC---CHHHHHHHHHHHhCChhhCcCHHHHhc
Confidence 1111 110 1 111111111 234456667999999999999999874
|
Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast |
| >cd05624 STKc_MRCK_beta Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase beta | Back alignment and domain information |
|---|
Probab=98.94 E-value=5.7e-10 Score=122.78 Aligned_cols=76 Identities=21% Similarity=0.300 Sum_probs=59.0
Q ss_pred CcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeec-----CCCCchhHHHHHHHHHHHHHhcCCCCC
Q 038019 643 PNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMR-----GHLTEKADVFSFGVVALEIISGRASSD 717 (866)
Q Consensus 643 ~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~-----~~~t~ksDVySfGvvLlEl~tg~~p~~ 717 (866)
.|++...+...++.|||.++.+....... .....||++|||||++.. +.++.++|||||||+++||+||+.|+.
T Consensus 131 ~Nill~~~~~~kl~DfG~a~~~~~~~~~~-~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwSlGvil~ell~g~~Pf~ 209 (331)
T cd05624 131 DNVLLDMNGHIRLADFGSCLKMNQDGTVQ-SSVAVGTPDYISPEILQAMEDGMGKYGPECDWWSLGVCMYEMLYGETPFY 209 (331)
T ss_pred HHEEEcCCCCEEEEeccceeeccCCCcee-eccccCCcccCCHHHHhccccCCCCCCCcccEEeeehhhhhhhhCCCCcc
Confidence 36666666667889999988776543211 122468999999998865 578899999999999999999999997
Q ss_pred CC
Q 038019 718 KS 719 (866)
Q Consensus 718 ~~ 719 (866)
..
T Consensus 210 ~~ 211 (331)
T cd05624 210 AE 211 (331)
T ss_pred CC
Confidence 53
|
Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) beta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKbeta is expressed ubiquitously in many tissues. |
| >cd08226 PK_STRAD_beta Pseudokinase domain of STE20-related kinase adapter protein beta | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.1e-09 Score=120.51 Aligned_cols=103 Identities=21% Similarity=0.314 Sum_probs=64.5
Q ss_pred CCCCccCceeeec--CCCCchhHHHHHHHHHHHHHhcCCCCCCCchhhhhcHHHHHHH----------------H-----
Q 038019 678 NSYGYLAPEYAMR--GHLTEKADVFSFGVVALEIISGRASSDKSLDMEKIYLLEWAWN----------------L----- 734 (866)
Q Consensus 678 gt~gY~aPE~~~~--~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~~~~~~l~~~~~~----------------~----- 734 (866)
++..|||||++.+ ..++.++|||||||+++||++|+.|+....... .+...... .
T Consensus 170 ~~~~y~aPE~~~~~~~~~~~~~DiwslG~~l~el~~g~~p~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (328)
T cd08226 170 SVLPWLSPELLRQDLYGYNVKSDIYSVGITACELATGRVPFQDMLRTQ--MLLQKLKGPPYSPLDITTFPCEESRMKNSQ 247 (328)
T ss_pred CccCccChhhhcCCCCCCCchhhHHHHHHHHHHHHhCCCCCCCcChHH--HHHHHhcCCCCCCccccccchhhhhhccch
Confidence 4567999999876 357899999999999999999999987543211 11111000 0
Q ss_pred --hhc---------CCcccccCCccc-ccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 735 --HEN---------NQSFGLVDPTLT-EFNDKEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 735 --~~~---------~~~~~~~d~~l~-~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
... +....+.++.+. .........+.+++.+|++.||++|||+.||++
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~Rpta~e~l~ 307 (328)
T cd08226 248 SGVDSGIGESVVAAGMTQTMTSERLRTPSSKTFSPAFQNLVELCLQQDPEKRPSASSLLS 307 (328)
T ss_pred hhhhcccccchhccccccccccccccchhhhhhhHHHHHHHHHHccCCcccCCCHHHHhh
Confidence 000 000011111111 111223446777888999999999999999974
|
Protein Kinase family, STE20-related kinase adapter protein (STRAD) beta subfamily, pseudokinase domain. The STRAD-beta subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpig |
| >cd07836 STKc_Pho85 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Pho85 | Back alignment and domain information |
|---|
Probab=98.94 E-value=3e-10 Score=121.93 Aligned_cols=134 Identities=16% Similarity=0.194 Sum_probs=81.8
Q ss_pred cccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeec-CCCCchhHHHHHHHHHHHHHhcCCCCCCCchh
Q 038019 644 NIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMR-GHLTEKADVFSFGVVALEIISGRASSDKSLDM 722 (866)
Q Consensus 644 ~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~-~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~~ 722 (866)
|++..++...++.|||.++.++... ..+....++..|++||+..+ ..++.++|||||||+++|+++|+.|+......
T Consensus 130 ni~~~~~~~~~l~d~g~~~~~~~~~--~~~~~~~~~~~y~~PE~~~~~~~~~~~~Dv~slG~~l~~l~~g~~~~~~~~~~ 207 (284)
T cd07836 130 NLLINKRGELKLADFGLARAFGIPV--NTFSNEVVTLWYRAPDVLLGSRTYSTSIDIWSVGCIMAEMITGRPLFPGTNNE 207 (284)
T ss_pred HEEECCCCcEEEeecchhhhhcCCc--cccccccccccccChHHhcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCcH
Confidence 5565556667788898887665321 12233457889999998765 45789999999999999999999998754332
Q ss_pred hhhcHHHHHHHHhh---cC-----CcccccCCcccc--------cCHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 723 EKIYLLEWAWNLHE---NN-----QSFGLVDPTLTE--------FNDKEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 723 ~~~~l~~~~~~~~~---~~-----~~~~~~d~~l~~--------~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
+. ..-+..... .. ............ ........+.++...|++.+|++||++.||++
T Consensus 208 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~R~~~~~~l~ 280 (284)
T cd07836 208 DQ---LLKIFRIMGTPTESTWPGISQLPEYKPTFPRYPPQDLQQLFPHADPLGIDLLHRLLQLNPELRISAHDALQ 280 (284)
T ss_pred HH---HHHHHHHhCCCChhhHHHHhcCchhcccccCCChHHHHHHhhhcCcHHHHHHHHHhcCCcccCCCHHHHhc
Confidence 21 111111000 00 000000011100 00111234556777999999999999999874
|
Serine/Threonine Kinases (STKs), Pho85 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Pho85 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Pho85 is a multifunctional Cyclin-Dependent protein Kinase (CDK) in yeast. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Pho85 is regulated by 10 different cyclins (Pcls) and plays a role in G1 progression, cell polarity, phosphate and glycogen metabolism, gene expression, and in signaling changes in the environment. |
| >cd05579 STKc_MAST_like Catalytic domain of Microtubule-associated serine/threonine kinase-like proteins | Back alignment and domain information |
|---|
Probab=98.93 E-value=2.2e-10 Score=121.26 Aligned_cols=128 Identities=16% Similarity=0.101 Sum_probs=84.8
Q ss_pred cccCHHHHHHHhcCCccccccCCCCc------eeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCC
Q 038019 644 NIFGYAELRSATKDFNRSNKLGEGGY------GPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSD 717 (866)
Q Consensus 644 ~~~~~~~~~~~~~dF~~~~~lg~g~~------g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~ 717 (866)
|++..++...++.|||.+.....+.. ........++..|+|||+......+.++||||||++++|++||+.|+.
T Consensus 123 nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~Dv~slG~~~~~l~~g~~p~~ 202 (265)
T cd05579 123 NILIDSNGHLKLTDFGLSKVGLVRRQINLNDDEKEDKRIVGTPDYIAPEVILGQGHSKTVDWWSLGCILYEFLVGIPPFH 202 (265)
T ss_pred HeEEcCCCCEEEEecccchhcccCcccccccccccccCcccCccccCHHHhcCCCCCcchhhHHHHHHHHHHHhCCCCCC
Confidence 56666666677889988776543321 012223457889999999988889999999999999999999999987
Q ss_pred CCchhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHh
Q 038019 718 KSLDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLA 785 (866)
Q Consensus 718 ~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~ 785 (866)
.....+ .. ..... +.. ++ .... .....+..+...|++.+|++||++.+|.+.|+
T Consensus 203 ~~~~~~---~~---~~~~~-~~~----~~--~~~~-~~~~~~~~~i~~~l~~~p~~Rpt~~~~~~~l~ 256 (265)
T cd05579 203 GETPEE---IF---QNILN-GKI----EW--PEDV-EVSDEAIDLISKLLVPDPEKRLGAKSIEEIKN 256 (265)
T ss_pred CCCHHH---HH---HHHhc-CCc----CC--Cccc-cCCHHHHHHHHHHhcCCHhhcCCCccHHHHhc
Confidence 543221 11 11111 111 00 0000 01234456666999999999999988888776
|
Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MAST kinase subfamily includes MAST kinases, MAST-like (MASTL) kinases, and fungal kinases with similarity to Saccharomyces cerevisiae Rim15 and Schizosaccharomyces pombe cek1. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. MASTL kinases carry only a catalytic domain which contains a long insert re |
| >cd06633 STKc_TAO3 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 3 | Back alignment and domain information |
|---|
Probab=98.92 E-value=6.3e-10 Score=121.43 Aligned_cols=119 Identities=23% Similarity=0.340 Sum_probs=77.7
Q ss_pred cccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeee---cCCCCchhHHHHHHHHHHHHHhcCCCCCCCc
Q 038019 644 NIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAM---RGHLTEKADVFSFGVVALEIISGRASSDKSL 720 (866)
Q Consensus 644 ~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~---~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~ 720 (866)
|++...+...++.|||.+...... ....|+..|+|||++. .+.++.++|||||||+++||++|+.|+....
T Consensus 151 nili~~~~~~kL~dfg~~~~~~~~------~~~~~~~~y~aPE~~~~~~~~~~~~~sDv~slGvil~el~~g~~p~~~~~ 224 (313)
T cd06633 151 NILLTEPGQVKLADFGSASKSSPA------NSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMN 224 (313)
T ss_pred hEEECCCCCEEEeecCCCcccCCC------CCccccccccChhhccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCCCC
Confidence 555555556678889877644322 1235788999999974 4678999999999999999999999986533
Q ss_pred hhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 721 DMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 721 ~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
... .. ....... ......+ .+. ..+.++..+|++.+|.+||++.+++.
T Consensus 225 ~~~---~~---~~~~~~~-~~~~~~~---~~~----~~l~~li~~~l~~~P~~Rp~~~~~l~ 272 (313)
T cd06633 225 AMS---AL---YHIAQND-SPTLQSN---EWT----DSFRGFVDYCLQKIPQERPASAELLR 272 (313)
T ss_pred hHH---HH---HHHHhcC-CCCCCcc---ccC----HHHHHHHHHHccCChhhCcCHHHHhc
Confidence 211 11 1111111 1111111 111 23455666999999999999999975
|
Serine/threonine kinases (STKs), thousand-and-one amino acids 3 (TAO3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO3 is also known as JIK (JNK inhibitory kinase) or KFC (kinase from chicken). It specifically activates c-Jun N-terminal kinase (JNK), presumably by phosphorylating and activating MKK4/MKK7. In Saccharomyces cerevisiae, TAO3 is a co |
| >cd05574 STKc_phototropin_like Catalytic domain of Phototropin-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=98.92 E-value=3.9e-10 Score=123.22 Aligned_cols=95 Identities=17% Similarity=0.164 Sum_probs=64.2
Q ss_pred cCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCCchhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHH
Q 038019 677 ANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSLDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEA 756 (866)
Q Consensus 677 ~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~ 756 (866)
.||..|+|||+..+..++.++|||||||++|||++|+.|+........ + ..... . ++...... ...
T Consensus 193 ~g~~~y~aPE~~~~~~~~~~~Di~slG~ll~~l~~g~~pf~~~~~~~~--~----~~~~~-~------~~~~~~~~-~~~ 258 (316)
T cd05574 193 VGTEEYIAPEVISGDGHGSAVDWWTLGILLYEMLYGTTPFKGSNRDET--F----SNILK-K------EVTFPGSP-PVS 258 (316)
T ss_pred cCccCCcCHHHHcCCCCCchHHHHHHHHHHHHHhhCCCCCCCCchHHH--H----HHHhc-C------CccCCCcc-ccC
Confidence 578899999999988999999999999999999999999875432211 1 11111 0 01111110 122
Q ss_pred HHHHHHHHHccCCCCCCCCCHHHHHHHHh
Q 038019 757 LRVIGVALLCTQTSPMMRPPMSRVVAMLA 785 (866)
Q Consensus 757 ~~~~~la~~C~~~~p~~RPsm~~V~~~L~ 785 (866)
..+.++..+|++.+|++||++...++.+.
T Consensus 259 ~~~~~li~~~l~~~p~~R~s~~~~~~~ll 287 (316)
T cd05574 259 SSARDLIRKLLVKDPSKRLGSKRGAAEIK 287 (316)
T ss_pred HHHHHHHHHHccCCHhHCCCchhhHHHHH
Confidence 34555666999999999999555555444
|
Serine/Threonine Kinases (STKs), Phototropin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The phototropin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Included in this subfamily are plant phototropins and predominantly uncharacterized fungal STKs whose catalytic domains resemble the phototropin kinase domain. One protein from Neurospora crassa is called nrc-2. Phototropins are blue-light receptors that control responses such as phototropism, stromatal opening, and chloroplast movement in order to optimize the photosynthetic efficiency of plants. They are light-activated STKs that contain an N-termin |
| >cd05606 STKc_beta_ARK Catalytic domain of the Protein Serine/Threonine Kinase, beta-adrenergic receptor kinase | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.1e-09 Score=117.25 Aligned_cols=122 Identities=16% Similarity=0.152 Sum_probs=80.0
Q ss_pred cccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecC-CCCchhHHHHHHHHHHHHHhcCCCCCCCchh
Q 038019 644 NIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRG-HLTEKADVFSFGVVALEIISGRASSDKSLDM 722 (866)
Q Consensus 644 ~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~-~~t~ksDVySfGvvLlEl~tg~~p~~~~~~~ 722 (866)
|++...+...++.|||.+..+.... .....|+..|+|||+...+ .++.++|||||||+++||++|+.|+......
T Consensus 127 nili~~~~~~kl~dfg~~~~~~~~~----~~~~~~~~~y~aPE~~~~~~~~~~~~Di~s~G~~l~~l~~g~~p~~~~~~~ 202 (278)
T cd05606 127 NILLDEHGHVRISDLGLACDFSKKK----PHASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQHKTK 202 (278)
T ss_pred HEEECCCCCEEEccCcCccccCccC----CcCcCCCcCCcCcHHhcCCCCCCcccchHhHHHHHHHHHhCCCCCCCCCcc
Confidence 5555555566788999887664322 1234689999999998755 6899999999999999999999998754221
Q ss_pred hhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCC-----CHHHHHH
Q 038019 723 EKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRP-----PMSRVVA 782 (866)
Q Consensus 723 ~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RP-----sm~~V~~ 782 (866)
... ....... ..++.+.... ...+.++...|++.+|++|| ++.++.+
T Consensus 203 ~~~----~~~~~~~------~~~~~~~~~~---s~~~~~li~~~l~~~p~~R~~~~~~~~~~ll~ 254 (278)
T cd05606 203 DKH----EIDRMTL------TMAVELPDSF---SPELRSLLEGLLQRDVNRRLGCLGRGAQEVKE 254 (278)
T ss_pred chH----HHHHHhh------ccCCCCCCcC---CHHHHHHHHHHhhcCHHhccCCCCCCHHHHHh
Confidence 111 1111110 1122221111 23455566699999999999 8888864
|
Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, beta-adrenergic receptor kinase (beta-ARK) group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. The beta-ARK group is co |
| >cd05623 STKc_MRCK_alpha Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase alpha | Back alignment and domain information |
|---|
Probab=98.92 E-value=7.6e-10 Score=121.87 Aligned_cols=131 Identities=20% Similarity=0.272 Sum_probs=80.2
Q ss_pred CcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeee-----cCCCCchhHHHHHHHHHHHHHhcCCCCC
Q 038019 643 PNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAM-----RGHLTEKADVFSFGVVALEIISGRASSD 717 (866)
Q Consensus 643 ~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~-----~~~~t~ksDVySfGvvLlEl~tg~~p~~ 717 (866)
.|++...+...++.|||.+..+...+. .......||++|||||++. .+.++.++|||||||+++||++|+.|+.
T Consensus 131 ~Nili~~~~~~kL~DfG~a~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DvwSlGvil~ell~g~~Pf~ 209 (332)
T cd05623 131 DNILMDMNGHIRLADFGSCLKLMEDGT-VQSSVAVGTPDYISPEILQAMEDGKGKYGPECDWWSLGVCMYEMLYGETPFY 209 (332)
T ss_pred HHEEECCCCCEEEeecchheecccCCc-ceecccccCccccCHHHHhccccCCCCCCCcCCEEeeHHHHHHHhcCCCCCC
Confidence 366666666778999999877654432 1222346999999999886 3568999999999999999999999987
Q ss_pred CCchhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 038019 718 KSLDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAM 783 (866)
Q Consensus 718 ~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~ 783 (866)
..... +............. +....... .+++..+++- +.|..+++..||++.|+.+.
T Consensus 210 ~~~~~------~~~~~i~~~~~~~~-~p~~~~~~-s~~~~~li~~-ll~~~~~r~~r~~~~~~~~h 266 (332)
T cd05623 210 AESLV------ETYGKIMNHKERFQ-FPAQVTDV-SEDAKDLIRR-LICSREHRLGQNGIEDFKQH 266 (332)
T ss_pred CCCHH------HHHHHHhCCCcccc-CCCccccC-CHHHHHHHHH-HccChhhhcCCCCHHHHhCC
Confidence 53321 12222221110000 11111111 2344444442 23555556667898888654
|
Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKalpha is expressed ubiquitously in many tissues. It plays a role in the regulation of peripheral actin reorganization and neurite outgrowth. It may also play a role in the transferrin iron uptake pathw |
| >cd05598 STKc_LATS Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor | Back alignment and domain information |
|---|
Probab=98.92 E-value=5.4e-10 Score=125.35 Aligned_cols=45 Identities=27% Similarity=0.417 Sum_probs=41.4
Q ss_pred ecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCCc
Q 038019 676 TANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSL 720 (866)
Q Consensus 676 ~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~ 720 (866)
..||++|||||++....++.++|||||||+++||+||+.|+....
T Consensus 204 ~~gt~~y~aPE~~~~~~~~~~~DiwSlGvilyell~G~~Pf~~~~ 248 (376)
T cd05598 204 LVGTPNYIAPEVLLRTGYTQLCDWWSVGVILYEMLVGQPPFLADT 248 (376)
T ss_pred cCCCccccCHHHHcCCCCCcceeeeeccceeeehhhCCCCCCCCC
Confidence 469999999999999999999999999999999999999997544
|
Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS was originally identified in Drosophila using a screen for genes whose inactivation led to overproliferation of cells. In tetrapods, there are two LATS isoforms, LATS1 and LATS2. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. |
| >cd05622 STKc_ROCK1 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 1 | Back alignment and domain information |
|---|
Probab=98.92 E-value=5.7e-10 Score=124.71 Aligned_cols=76 Identities=18% Similarity=0.239 Sum_probs=59.3
Q ss_pred CcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecC----CCCchhHHHHHHHHHHHHHhcCCCCCC
Q 038019 643 PNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRG----HLTEKADVFSFGVVALEIISGRASSDK 718 (866)
Q Consensus 643 ~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~----~~t~ksDVySfGvvLlEl~tg~~p~~~ 718 (866)
.|++...+...++.|||.++.+...+... .....||+.|||||++... .++.++|||||||+++||++|+.|+..
T Consensus 171 ~NIll~~~~~ikL~DfG~a~~~~~~~~~~-~~~~~gt~~y~aPE~l~~~~~~~~~~~~~DiwSlGvilyell~G~~Pf~~ 249 (371)
T cd05622 171 DNMLLDKSGHLKLADFGTCMKMNKEGMVR-CDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEMLVGDTPFYA 249 (371)
T ss_pred HHEEECCCCCEEEEeCCceeEcCcCCccc-ccCcccCccccCHHHHhccCCCccCCCccceeehhHHHHHHHhCCCCCCC
Confidence 36666666677899999998876443211 1244699999999998643 488999999999999999999999975
Q ss_pred C
Q 038019 719 S 719 (866)
Q Consensus 719 ~ 719 (866)
.
T Consensus 250 ~ 250 (371)
T cd05622 250 D 250 (371)
T ss_pred C
Confidence 4
|
Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK1 (or ROK-beta) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK1 is preferentially expressed in the liver, lung, spleen, testes, an |
| >KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.91 E-value=9.2e-10 Score=118.00 Aligned_cols=78 Identities=19% Similarity=0.270 Sum_probs=67.3
Q ss_pred cccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCCchhh
Q 038019 644 NIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSLDME 723 (866)
Q Consensus 644 ~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~~~ 723 (866)
|.+++.+.-.++-|||.++.||.|+-.- ..+||+-|+|||.+.....+..+|.||+||+++||+||++||....+..
T Consensus 550 NllLd~~Gy~KLVDFGFAKki~~g~KTw---TFcGTpEYVAPEIILnKGHD~avDyWaLGIli~ELL~G~pPFs~~dpmk 626 (732)
T KOG0614|consen 550 NLLLDNRGYLKLVDFGFAKKIGSGRKTW---TFCGTPEYVAPEIILNKGHDRAVDYWALGILIYELLTGSPPFSGVDPMK 626 (732)
T ss_pred heeeccCCceEEeehhhHHHhccCCcee---eecCCcccccchhhhccCcchhhHHHHHHHHHHHHHcCCCCCCCCchHH
Confidence 6677778888899999999999886432 3579999999999999999999999999999999999999998765544
Q ss_pred h
Q 038019 724 K 724 (866)
Q Consensus 724 ~ 724 (866)
.
T Consensus 627 t 627 (732)
T KOG0614|consen 627 T 627 (732)
T ss_pred H
Confidence 3
|
|
| >cd06617 PKc_MKK3_6 Catalytic domain of the dual-specificity Protein Kinases, MAP kinase kinases 3 and 6 | Back alignment and domain information |
|---|
Probab=98.91 E-value=5.1e-10 Score=120.05 Aligned_cols=123 Identities=22% Similarity=0.235 Sum_probs=80.4
Q ss_pred cccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeec----CCCCchhHHHHHHHHHHHHHhcCCCCCCC
Q 038019 644 NIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMR----GHLTEKADVFSFGVVALEIISGRASSDKS 719 (866)
Q Consensus 644 ~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~----~~~t~ksDVySfGvvLlEl~tg~~p~~~~ 719 (866)
+++...+...++.|||.++.+.... ......|+..|+|||+... ..++.++||||||++++||++|+.|+...
T Consensus 134 nil~~~~~~~kl~dfg~~~~~~~~~---~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~ 210 (283)
T cd06617 134 NVLINRNGQVKLCDFGISGYLVDSV---AKTIDAGCKPYMAPERINPELNQKGYDVKSDVWSLGITMIELATGRFPYDSW 210 (283)
T ss_pred HEEECCCCCEEEeeccccccccccc---ccccccCCccccChhhcCCcccccccCccccchhhHHHHHHHHhCCCCCCcc
Confidence 5555556667889999988765432 1223468899999998754 45689999999999999999999998642
Q ss_pred chhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 720 LDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 720 ~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
.... ..+. .... ..++.+.. ......+.+++..|++.+|++||++.+|++
T Consensus 211 ~~~~-~~~~----~~~~------~~~~~~~~--~~~~~~l~~li~~~l~~~p~~Rp~~~~il~ 260 (283)
T cd06617 211 KTPF-QQLK----QVVE------EPSPQLPA--EKFSPEFQDFVNKCLKKNYKERPNYPELLQ 260 (283)
T ss_pred ccCH-HHHH----HHHh------cCCCCCCc--cccCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence 2110 1111 1111 11122210 001123556667999999999999999975
|
Protein kinases (PKs), MAP kinase kinase 3 (MKK3) and MKK6 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK3 and MKK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK3 and MKK6 are dual-specificity PKs |
| >KOG0599 consensus Phosphorylase kinase gamma subunit [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.91 E-value=3.7e-10 Score=112.11 Aligned_cols=125 Identities=18% Similarity=0.220 Sum_probs=90.1
Q ss_pred CcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeec------CCCCchhHHHHHHHHHHHHHhcCCCC
Q 038019 643 PNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMR------GHLTEKADVFSFGVVALEIISGRASS 716 (866)
Q Consensus 643 ~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~------~~~t~ksDVySfGvvLlEl~tg~~p~ 716 (866)
-||+.+++...++.|||.+..|..|. --+-.+||+||+|||.+.. -.|+..+|.|+.||+++-|+.|-+||
T Consensus 152 ENILlddn~~i~isDFGFa~~l~~Ge---kLrelCGTPgYLAPEtikC~m~e~~pGYs~EVD~Wa~GVImyTLLaGcpPF 228 (411)
T KOG0599|consen 152 ENILLDDNMNIKISDFGFACQLEPGE---KLRELCGTPGYLAPETIKCSMYENHPGYSKEVDEWACGVIMYTLLAGCPPF 228 (411)
T ss_pred hheeeccccceEEeccceeeccCCch---hHHHhcCCCcccChhheeeecccCCCCccchhhHHHHHHHHHHHHcCCCch
Confidence 38899999999999999999998764 3445689999999998753 36889999999999999999999998
Q ss_pred CCCchhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 717 DKSLDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 717 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
..... .. ..+++.+|+. +.-.|.. .+-...+-+++-+|++.||.+|-|.+|+++
T Consensus 229 wHRkQ---ml----MLR~ImeGky-qF~speW----adis~~~KdLIsrlLqVdp~~Ritake~La 282 (411)
T KOG0599|consen 229 WHRKQ---ML----MLRMIMEGKY-QFRSPEW----ADISATVKDLISRLLQVDPTKRITAKEALA 282 (411)
T ss_pred hHHHH---HH----HHHHHHhccc-ccCCcch----hhccccHHHHHHHHHeeCchhcccHHHHhc
Confidence 74221 11 1234444433 1111211 112223444666999999999999999864
|
|
| >cd05583 STKc_MSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase | Back alignment and domain information |
|---|
Probab=98.91 E-value=5.6e-10 Score=120.20 Aligned_cols=130 Identities=16% Similarity=0.156 Sum_probs=84.0
Q ss_pred cccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCC--CCchhHHHHHHHHHHHHHhcCCCCCCCch
Q 038019 644 NIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGH--LTEKADVFSFGVVALEIISGRASSDKSLD 721 (866)
Q Consensus 644 ~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~--~t~ksDVySfGvvLlEl~tg~~p~~~~~~ 721 (866)
|++...+...++.|||.++.+........ ....|+..|+|||+..+.. .+.++||||||++++||+||+.|+.....
T Consensus 135 nil~~~~~~~~l~dfg~~~~~~~~~~~~~-~~~~~~~~y~aPE~~~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~ 213 (288)
T cd05583 135 NILLDSEGHVVLTDFGLSKEFLAEEEERA-YSFCGTIEYMAPEVIRGGSGGHDKAVDWWSLGVLTFELLTGASPFTVDGE 213 (288)
T ss_pred HeEECCCCCEEEEECcccccccccccccc-ccccCCccccCHHHhcCCCCCCcchhhhHHHHHHHHHHHhCCCCcccCcc
Confidence 45555555667889998876654332222 2345889999999987665 78999999999999999999999853221
Q ss_pred hhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhc
Q 038019 722 MEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLAG 786 (866)
Q Consensus 722 ~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~~ 786 (866)
. ....+........ ++....... ..+.++..+|++.+|++|||+++|.+.|+.
T Consensus 214 ~--~~~~~~~~~~~~~-------~~~~~~~~~---~~l~~li~~~l~~~p~~R~t~~~~~~~l~~ 266 (288)
T cd05583 214 Q--NSQSEISRRILKS-------KPPFPKTMS---AEARDFIQKLLEKDPKKRLGANGADEIKNH 266 (288)
T ss_pred c--chHHHHHHHHHcc-------CCCCCcccC---HHHHHHHHHHhcCCHhhccCcchHHHHhcC
Confidence 1 1111111111111 111111111 234456669999999999999999988874
|
Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, in response to various stimuli such as growth factors, hormones, neurotransmitters, cellular stress, and pro-inflammatory cytokines |
| >cd06630 STKc_MEKK1 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 1 | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.4e-09 Score=115.49 Aligned_cols=119 Identities=19% Similarity=0.364 Sum_probs=77.8
Q ss_pred HHhcCCccccccCCCCcee-EE-EeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCCchhhhhcHHHH
Q 038019 653 SATKDFNRSNKLGEGGYGP-VY-KVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSLDMEKIYLLEW 730 (866)
Q Consensus 653 ~~~~dF~~~~~lg~g~~g~-vy-~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~~~~~~l~~~ 730 (866)
.++.|||.+..+.....+. .+ ....|+.+|+|||+.....++.++||||+|++++||++|+.|+....... ....
T Consensus 143 ~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~PE~~~~~~~~~~~Dv~slG~~l~~l~~g~~p~~~~~~~~---~~~~ 219 (268)
T cd06630 143 LRIADFGAAARLAAKGTGAGEFQGQLLGTIAFMAPEVLRGEQYGRSCDVWSVGCVIIEMATAKPPWNAEKHSN---HLAL 219 (268)
T ss_pred EEEcccccccccccccccCCccccccccccceeCHhHhccCCCCcccchHHHHHHHHHHHhCCCCCCCCCCcc---hHHH
Confidence 5678888877665432111 11 12357899999999988889999999999999999999999986432211 1111
Q ss_pred HHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 731 AWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 731 ~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
....... ...+. .+......+.++...|++.+|++||++.|+++
T Consensus 220 ~~~~~~~-----~~~~~---~~~~~~~~~~~~i~~~l~~~p~~R~~~~~ll~ 263 (268)
T cd06630 220 IFKIASA-----TTAPS---IPEHLSPGLRDVTLRCLELQPEDRPPSRELLK 263 (268)
T ss_pred HHHHhcc-----CCCCC---CchhhCHHHHHHHHHHcCCCcccCcCHHHHhc
Confidence 1111110 01111 12222344566777999999999999999874
|
Serine/threonine kinases (STKs), MAP/ERK kinase kinase 1 (MEKK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK1 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK1 activates the extracellular signal-regulated kinase 1/2 (ERK1/2) and c-Jun N-terminal kinase (JNK) pathways by activating their |
| >cd05621 STKc_ROCK2 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 2 | Back alignment and domain information |
|---|
Probab=98.91 E-value=4.9e-10 Score=125.10 Aligned_cols=77 Identities=19% Similarity=0.250 Sum_probs=60.5
Q ss_pred CCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecC----CCCchhHHHHHHHHHHHHHhcCCCCC
Q 038019 642 KPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRG----HLTEKADVFSFGVVALEIISGRASSD 717 (866)
Q Consensus 642 ~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~----~~t~ksDVySfGvvLlEl~tg~~p~~ 717 (866)
..|++..++...++.|||.+..+...+... .....||++|||||.+... .++.++||||+||+++||+||+.|+.
T Consensus 170 p~NILl~~~~~~kL~DFG~a~~~~~~~~~~-~~~~~gt~~Y~aPE~~~~~~~~~~~~~~~DiwSlG~ilyell~G~~Pf~ 248 (370)
T cd05621 170 PDNMLLDKHGHLKLADFGTCMKMDETGMVR-CDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLFEMLVGDTPFY 248 (370)
T ss_pred HHHEEECCCCCEEEEecccceecccCCcee-cccCCCCcccCCHHHHhccCCCCCCCcccCEEeehHHHHHHHhCCCCCC
Confidence 346777777778899999998876543311 1244699999999988643 47899999999999999999999997
Q ss_pred CC
Q 038019 718 KS 719 (866)
Q Consensus 718 ~~ 719 (866)
..
T Consensus 249 ~~ 250 (370)
T cd05621 249 AD 250 (370)
T ss_pred CC
Confidence 54
|
Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK2 (or ROK-alpha) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK2 was the first identified target of activated RhoA, and was found |
| >PLN03225 Serine/threonine-protein kinase SNT7; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=9.7e-10 Score=128.52 Aligned_cols=133 Identities=20% Similarity=0.148 Sum_probs=78.2
Q ss_pred CcccCHH-HHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeec----------------------CCCCchhHH
Q 038019 643 PNIFGYA-ELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMR----------------------GHLTEKADV 699 (866)
Q Consensus 643 ~~~~~~~-~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~----------------------~~~t~ksDV 699 (866)
.|++..+ ....++.|||.++.+..+. ........+|++|||||.+.. ..++.|+||
T Consensus 284 ~NILl~~~~~~~KL~DFGlA~~l~~~~-~~~~~~~~~t~~Y~APE~~~~~~~~~~~~~~~~~~~~sp~l~~~~~~~k~DV 362 (566)
T PLN03225 284 QNIIFSEGSGSFKIIDLGAAADLRVGI-NYIPKEFLLDPRYAAPEQYIMSTQTPSAPSAPVATALSPVLWQLNLPDRFDI 362 (566)
T ss_pred HHEEEeCCCCcEEEEeCCCcccccccc-ccCCcccccCCCccChHHhhccCCCCCCccccccccccchhccccCCCCccc
Confidence 3666553 3567899999998775442 223344578999999995421 134567899
Q ss_pred HHHHHHHHHHHhcCCCCCCCch-------hhhhcHHHHHHHHhhcCCcccccCCccc---ccCHHHHHHHHHHHHHccCC
Q 038019 700 FSFGVVALEIISGRASSDKSLD-------MEKIYLLEWAWNLHENNQSFGLVDPTLT---EFNDKEALRVIGVALLCTQT 769 (866)
Q Consensus 700 ySfGvvLlEl~tg~~p~~~~~~-------~~~~~l~~~~~~~~~~~~~~~~~d~~l~---~~~~~~~~~~~~la~~C~~~ 769 (866)
||||||||||+++..+.+.... .....+..|....... ..+.+. +..........++...|++.
T Consensus 363 wSlGviL~el~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~d~~~~~~~dLi~~mL~~ 436 (566)
T PLN03225 363 YSAGLIFLQMAFPNLRSDSNLIQFNRQLKRNDYDLVAWRKLVEPR------ASPDLRRGFEVLDLDGGAGWELLKSMMRF 436 (566)
T ss_pred HHHHHHHHHHHhCcCCCchHHHHHHHHHHhcCCcHHHHHHhhccc------cchhhhhhhhhccccchHHHHHHHHHccC
Confidence 9999999999998766542110 0011222332111100 000000 00000111234567799999
Q ss_pred CCCCCCCHHHHHH
Q 038019 770 SPMMRPPMSRVVA 782 (866)
Q Consensus 770 ~p~~RPsm~~V~~ 782 (866)
||++|||+.|+++
T Consensus 437 dP~kR~ta~e~L~ 449 (566)
T PLN03225 437 KGRQRISAKAALA 449 (566)
T ss_pred CcccCCCHHHHhC
Confidence 9999999999976
|
|
| >cd05599 STKc_NDR_like Catalytic domain of Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=98.90 E-value=7.6e-10 Score=123.54 Aligned_cols=78 Identities=22% Similarity=0.283 Sum_probs=60.1
Q ss_pred CcccCHHHHHHHhcCCccccccCCCCceeEE------------------------------------EeecCCCCccCce
Q 038019 643 PNIFGYAELRSATKDFNRSNKLGEGGYGPVY------------------------------------KVTANSYGYLAPE 686 (866)
Q Consensus 643 ~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy------------------------------------~~~~gt~gY~aPE 686 (866)
.|++...+...++.|||.++.+..+.....| ....||++|||||
T Consensus 130 ~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE 209 (364)
T cd05599 130 DNLLLDAKGHIKLSDFGLCTGLKKSHRTEFYRILSHALPSNFLDFISKPMSSKRKAETWKRNRRALAYSTVGTPDYIAPE 209 (364)
T ss_pred HHeEECCCCCEEEeecccceeccccccccccccccccccccccccccccccccccccchhhcccccccccccCccccCHH
Confidence 3666666667778899988766433221111 0235999999999
Q ss_pred eeecCCCCchhHHHHHHHHHHHHHhcCCCCCCCc
Q 038019 687 YAMRGHLTEKADVFSFGVVALEIISGRASSDKSL 720 (866)
Q Consensus 687 ~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~ 720 (866)
++....++.++|||||||+++||++|+.|+....
T Consensus 210 ~~~~~~~~~~~DiwSlG~il~el~~G~~Pf~~~~ 243 (364)
T cd05599 210 VFLQTGYNKECDWWSLGVIMYEMLVGYPPFCSDN 243 (364)
T ss_pred HHcCCCCCCeeeeecchhHHHHhhcCCCCCCCCC
Confidence 9999999999999999999999999999997544
|
Serine/Threonine Kinases (STKs), Nuclear Dbf2-Related (NDR) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. NDR kinases regulate mitosis, cell growth, embryonic development, and neurological processes. They are also required for proper centrosome duplica |
| >cd05629 STKc_NDR_like_fungal Catalytic domain of Fungal Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=98.90 E-value=8.5e-10 Score=123.79 Aligned_cols=45 Identities=22% Similarity=0.360 Sum_probs=41.1
Q ss_pred ecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCCc
Q 038019 676 TANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSL 720 (866)
Q Consensus 676 ~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~ 720 (866)
..||++|+|||++....++.++|||||||+++||+||+.|+....
T Consensus 208 ~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~elltG~~Pf~~~~ 252 (377)
T cd05629 208 TVGTPDYIAPEIFLQQGYGQECDWWSLGAIMFECLIGWPPFCSEN 252 (377)
T ss_pred cCCCccccCHHHHccCCCCCceeeEecchhhhhhhcCCCCCCCCC
Confidence 369999999999998899999999999999999999999997543
|
Serine/Threonine Kinases (STKs), NDR kinase subfamily, fungal NDR-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group is composed of fungal NDR-like proteins including Saccharomyces cerevisiae CBK1 (or CBK1p), Schizosaccharomyces pombe Orb6 (or Orb6p), Ustilago maydis Ukc1 (or Ukc1p), and Neurospora crassa Cot1. Like NDR kinase, group members contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. CBK1 is an essential component in the RAM (regulation of |
| >cd05577 STKc_GRK Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.1e-09 Score=117.21 Aligned_cols=126 Identities=17% Similarity=0.127 Sum_probs=81.0
Q ss_pred cccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCCchhh
Q 038019 644 NIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSLDME 723 (866)
Q Consensus 644 ~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~~~ 723 (866)
|++...+...++.|||.+..+..+ .......++..|+|||+..++.++.++|||||||+++||++|+.|+.......
T Consensus 125 Nil~~~~~~~~l~dfg~~~~~~~~---~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~ 201 (277)
T cd05577 125 NVLLDDHGNVRISDLGLAVELKGG---KKIKGRAGTPGYMAPEVLQGEVYDFSVDWFALGCTLYEMIAGRSPFRQRKEKV 201 (277)
T ss_pred HEEECCCCCEEEccCcchhhhccC---CccccccCCCCcCCHHHhcCCCCCchhhhHHHHHHHHHHhhCCCCCCCCcccc
Confidence 556555556678899988776542 22344568889999999988889999999999999999999999986533211
Q ss_pred hhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHH-HHHHH
Q 038019 724 KIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSR-VVAML 784 (866)
Q Consensus 724 ~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~-V~~~L 784 (866)
. .+........ ......... ...+.++...|++.+|++||+.++ .+..|
T Consensus 202 ~---~~~~~~~~~~------~~~~~~~~~---~~~~~~li~~~l~~~p~~R~~~~~~~~~~l 251 (277)
T cd05577 202 E---KEELKRRTLE------MAVEYPDKF---SPEAKDLCEALLQKDPEKRLGCRGGSADEV 251 (277)
T ss_pred c---HHHHHhcccc------ccccCCccC---CHHHHHHHHHHccCChhHccCCCcccHHHH
Confidence 0 0001110000 001111111 223445566999999999996655 44444
|
Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. GRKs contain a central catalytic domain, flanked by N- and C-terminal extensions. The N-terminus contains an RGS (regulator of |
| >cd07877 STKc_p38alpha_MAPK14 Catalytic domain of the Serine/Threonine Kinase, p38alpha Mitogen-Activated Protein Kinase | Back alignment and domain information |
|---|
Probab=98.89 E-value=7.7e-10 Score=122.50 Aligned_cols=135 Identities=13% Similarity=0.138 Sum_probs=81.9
Q ss_pred CcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeec-CCCCchhHHHHHHHHHHHHHhcCCCCCCCch
Q 038019 643 PNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMR-GHLTEKADVFSFGVVALEIISGRASSDKSLD 721 (866)
Q Consensus 643 ~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~-~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~ 721 (866)
.|++..++...++.|||.++...... ....++..|+|||+... ..++.|+|||||||+++||++|+.|+.....
T Consensus 149 ~NIll~~~~~~kl~dfg~~~~~~~~~-----~~~~~~~~y~aPE~~~~~~~~~~~~DvwslG~il~el~~g~~pf~~~~~ 223 (345)
T cd07877 149 SNLAVNEDCELKILDFGLARHTDDEM-----TGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDH 223 (345)
T ss_pred HHEEEcCCCCEEEecccccccccccc-----cccccCCCccCHHHHhCccCCCchhhHHHHHHHHHHHHhCCCCCCCCCH
Confidence 36666666677888999888765432 23457889999998765 5688999999999999999999999864332
Q ss_pred hhhhc-HHHH-------HHHHhhcCCc-------ccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 722 MEKIY-LLEW-------AWNLHENNQS-------FGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 722 ~~~~~-l~~~-------~~~~~~~~~~-------~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
..... +..+ ....+..... .....+............+.+++..|++.+|.+||++.+++.
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dp~~R~t~~e~l~ 299 (345)
T cd07877 224 IDQLKLILRLVGTPGAELLKKISSESARNYIQSLTQMPKMNFANVFIGANPLAVDLLEKMLVLDSDKRITAAQALA 299 (345)
T ss_pred HHHHHHHHHHhCCCCHHHHhhcccHhHHHHHHHhcccCCcchhhhcCCCCHHHHHHHHHHcCCChhhcCCHHHHhc
Confidence 21110 0000 0000000000 000000000000001224566777999999999999998874
|
Serine/Threonine Kinases (STKs), p38alpha subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38alpha subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38alpha, also called MAPK14 |
| >cd05578 STKc_Yank1 Catalytic domain of the Protein Serine/Threonine Kinase, Yank1 | Back alignment and domain information |
|---|
Probab=98.89 E-value=4.4e-10 Score=118.80 Aligned_cols=121 Identities=21% Similarity=0.213 Sum_probs=83.3
Q ss_pred cccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCCchhh
Q 038019 644 NIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSLDME 723 (866)
Q Consensus 644 ~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~~~ 723 (866)
|++..++...++.|||....+..+. ......|+..|+|||+.....++.++||||||++++||++|+.|+......
T Consensus 130 nil~~~~~~~~l~d~~~~~~~~~~~---~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~- 205 (258)
T cd05578 130 NILLDEQGHVHITDFNIATKVTPDT---LTTSTSGTPGYMAPEVLCRQGYSVAVDWWSLGVTAYECLRGKRPYRGHSRT- 205 (258)
T ss_pred HeEEcCCCCEEEeecccccccCCCc---cccccCCChhhcCHHHHcccCCCCcccchhhHHHHHHHHhCCCCCCCCCcc-
Confidence 5666666667788999888776543 234456888999999999888999999999999999999999998754421
Q ss_pred hhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCH--HHH
Q 038019 724 KIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPM--SRV 780 (866)
Q Consensus 724 ~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm--~~V 780 (866)
..++........ .+.... .....+.++..+|++.+|++||++ +|+
T Consensus 206 ---~~~~~~~~~~~~------~~~~~~---~~~~~~~~~i~~~l~~~p~~R~~~~~~~l 252 (258)
T cd05578 206 ---IRDQIRAKQETA------DVLYPA---TWSTEAIDAINKLLERDPQKRLGDNLKDL 252 (258)
T ss_pred ---HHHHHHHHhccc------cccCcc---cCcHHHHHHHHHHccCChhHcCCccHHHH
Confidence 122222221110 011111 112445566679999999999999 554
|
Serine/Threonine Kinases (STKs), Yank1 or STK32A subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Yank1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily contains uncharacterized STKs with similarity to the human protein designated Yank1 or STK32A. |
| >KOG0584 consensus Serine/threonine protein kinase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.89 E-value=6.3e-10 Score=123.04 Aligned_cols=130 Identities=18% Similarity=0.206 Sum_probs=89.2
Q ss_pred hhhccCCCCCcccCHH-HHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhc
Q 038019 634 EVLVGIGSKPNIFGYA-ELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISG 712 (866)
Q Consensus 634 ~~~~~~~~~~~~~~~~-~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg 712 (866)
.++|+...--|||... -...|+.|.|++.++.+. -++.+.||+-+||||... -.|.+.+||||||+.+|||+|+
T Consensus 165 PIIHRDLKCDNIFinG~~G~VKIGDLGLAtl~r~s----~aksvIGTPEFMAPEmYE-E~YnE~VDVYaFGMCmLEMvT~ 239 (632)
T KOG0584|consen 165 PIIHRDLKCDNIFVNGNLGEVKIGDLGLATLLRKS----HAKSVIGTPEFMAPEMYE-ENYNELVDVYAFGMCMLEMVTS 239 (632)
T ss_pred CccccccccceEEEcCCcCceeecchhHHHHhhcc----ccceeccCccccChHHHh-hhcchhhhhhhhhHHHHHHHhc
Confidence 4455544445777554 456789999999888653 355679999999999765 7899999999999999999999
Q ss_pred CCCCCCCchhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 713 RASSDKSLDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 713 ~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
..||..-... .. +++..-.|.-.+ .+......++.++++ .|+.. .++|||..|.++
T Consensus 240 eYPYsEC~n~--AQ----IYKKV~SGiKP~----sl~kV~dPevr~fIe---kCl~~-~~~R~sa~eLL~ 295 (632)
T KOG0584|consen 240 EYPYSECTNP--AQ----IYKKVTSGIKPA----ALSKVKDPEVREFIE---KCLAT-KSERLSAKELLK 295 (632)
T ss_pred cCChhhhCCH--HH----HHHHHHcCCCHH----HhhccCCHHHHHHHH---HHhcC-chhccCHHHHhh
Confidence 9998743221 12 222222221111 112223345666655 99998 999999999874
|
|
| >KOG0661 consensus MAPK related serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.89 E-value=9.6e-10 Score=117.57 Aligned_cols=137 Identities=17% Similarity=0.220 Sum_probs=90.3
Q ss_pred cccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceee-ecCCCCchhHHHHHHHHHHHHHhcCCCCCCCchh
Q 038019 644 NIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYA-MRGHLTEKADVFSFGVVALEIISGRASSDKSLDM 722 (866)
Q Consensus 644 ~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~-~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~~ 722 (866)
|++....-..|++|||++|.+-.- .-|..-+.|.-|.|||++ +.+-|+.+.|+|+||+|+.|+.+-|+-|.+....
T Consensus 140 NiLi~~~~~iKiaDFGLARev~Sk---pPYTeYVSTRWYRAPEvLLrs~~Ys~pvD~wA~GcI~aEl~sLrPLFPG~sE~ 216 (538)
T KOG0661|consen 140 NILISGNDVIKIADFGLAREVRSK---PPYTEYVSTRWYRAPEVLLRSGYYSSPVDMWAVGCIMAELYSLRPLFPGASEI 216 (538)
T ss_pred heEecccceeEecccccccccccC---CCcchhhhcccccchHHhhhccccCCchHHHHHHHHHHHHHHhcccCCCCcHH
Confidence 454443556789999999998643 346666789999999976 5789999999999999999999999877665443
Q ss_pred hhhcHHHHHHHHhhcCCc------ccccC---Ccc-----cccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 038019 723 EKIYLLEWAWNLHENNQS------FGLVD---PTL-----TEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAM 783 (866)
Q Consensus 723 ~~~~l~~~~~~~~~~~~~------~~~~d---~~l-----~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~ 783 (866)
++..-+--|.....+... ...+. |.. .........+.+++...|++-||++|||++|.+++
T Consensus 217 Dqi~KIc~VLGtP~~~~~~eg~~La~~mnf~~P~~~~~~l~~L~p~~s~~~~~li~~ll~WDP~kRpTA~~al~~ 291 (538)
T KOG0661|consen 217 DQIYKICEVLGTPDKDSWPEGYNLASAMNFRFPQVKPSPLKDLLPNASSEAASLIERLLAWDPDKRPTASQALQH 291 (538)
T ss_pred HHHHHHHHHhCCCccccchhHHHHHHHhccCCCcCCCCChHHhCcccCHHHHHHHHHHhcCCCccCccHHHHhcC
Confidence 333222222111111110 01111 111 11112244566777779999999999999998764
|
|
| >cd05572 STKc_cGK_PKG Catalytic domain of the Protein Serine/Threonine Kinase, cGMP-dependent protein kinase | Back alignment and domain information |
|---|
Probab=98.88 E-value=8.2e-10 Score=117.04 Aligned_cols=119 Identities=17% Similarity=0.156 Sum_probs=79.8
Q ss_pred cccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCCchhh
Q 038019 644 NIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSLDME 723 (866)
Q Consensus 644 ~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~~~ 723 (866)
+++...+...++.||+.++.+..+... ....|+..|++||+.....++.++||||||++++|+++|+.|+......
T Consensus 123 nilv~~~~~~~l~df~~~~~~~~~~~~---~~~~~~~~~~~PE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~- 198 (262)
T cd05572 123 NLLLDSNGYVKLVDFGFAKKLKSGQKT---WTFCGTPEYVAPEIILNKGYDFSVDYWSLGILLYELLTGRPPFGEDDED- 198 (262)
T ss_pred HEEEcCCCCEEEeeCCcccccCccccc---ccccCCcCccChhHhcCCCCCChhhhhhhHHHHHHHHhCCCCcCCCCCC-
Confidence 566666667788899998887654311 1235788999999998888999999999999999999999998754321
Q ss_pred hhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCH
Q 038019 724 KIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPM 777 (866)
Q Consensus 724 ~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm 777 (866)
..+......... ..+.. +......+..+...|++.+|++||+|
T Consensus 199 ---~~~~~~~~~~~~-----~~~~~---~~~~~~~~~~~i~~~l~~~p~~R~~~ 241 (262)
T cd05572 199 ---PMEIYNDILKGN-----GKLEF---PNYIDKAAKDLIKQLLRRNPEERLGN 241 (262)
T ss_pred ---HHHHHHHHhccC-----CCCCC---CcccCHHHHHHHHHHccCChhhCcCC
Confidence 112222211100 00111 11112345666679999999999994
|
Serine/Threonine Kinases (STKs), cGMP-dependent protein kinase (cGK or PKG) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mammals have two cGK isoforms from different genes, cGKI and cGKII. cGKI exists as two splice variants, cGKI-alpha and cGKI-beta. cGK consists of an N-terminal regulatory domain containing a dimerization and an autoinhibitory pseudosubstrate region, two cGMP-binding domains, and a C-terminal catalytic domain. Binding of cGMP to both binding sites releases the inhibition of the catalytic center by the pseudosubstrate region, allowi |
| >KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.7e-09 Score=130.42 Aligned_cols=148 Identities=22% Similarity=0.316 Sum_probs=80.4
Q ss_pred eEEEEEEcccCcCCCCCcccCCCCCCCEEEccCCC--CCCCCCccccCCCCcCEEeccCCcCCCCCCccccCCCCCCEee
Q 038019 66 HITKLRVYGLNKKGVIPEELVTLQYLTVLKIDQNF--FTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKELTVLA 143 (866)
Q Consensus 66 ~v~~L~l~~~~l~~~~p~~l~~l~~L~~L~Ls~n~--l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 143 (866)
.++.+.+.+|.+.- ++... ..+.|++|-+..|. +.......|..++.|++|||++|.=-+.+|..+++|-+|++|+
T Consensus 524 ~~rr~s~~~~~~~~-~~~~~-~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~ 601 (889)
T KOG4658|consen 524 SVRRMSLMNNKIEH-IAGSS-ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLD 601 (889)
T ss_pred heeEEEEeccchhh-ccCCC-CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhccc
Confidence 34555555444432 22111 22356666666664 3333333455666666666666654456666666666666666
Q ss_pred ccCCCCCCCCchhhcCCCCccEEEeecCCCCCCChhhhhcCcCCCEEEecCCCC--CCCCcccccCCCCCCeEEc
Q 038019 144 FGTNNFSGALPPELGNLAKLEQLYIDSCGAGGEIPSTFAKLRNMQTLWASDNPF--TGKIPDFIGNWTKLKSLRF 216 (866)
Q Consensus 144 Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l--~~~~p~~l~~l~~L~~L~L 216 (866)
|++..++ .+|..+++|.+|.+|++..+.-...+|..+..|++|++|.+..... +...-..+.++.+|+.|..
T Consensus 602 L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~ 675 (889)
T KOG4658|consen 602 LSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSI 675 (889)
T ss_pred ccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhhee
Confidence 6666665 5666666666666666666555445555555666666666655431 1222233344444444444
|
|
| >KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.87 E-value=2.2e-10 Score=129.53 Aligned_cols=219 Identities=25% Similarity=0.302 Sum_probs=121.9
Q ss_pred CCCCCCCEEEccCCCCCCCCCccccCCCCcCEEeccCCcCCCCCCccccCCCCCCEeeccCCCCCCCCchhhcCCCCccE
Q 038019 86 VTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKELTVLAFGTNNFSGALPPELGNLAKLEQ 165 (866)
Q Consensus 86 ~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~ 165 (866)
..+..++.+++..|.+.. +-..+..+.+|+.|++..|+|.. +...+..+++|++|+|++|.|+... .+..++.|+.
T Consensus 69 ~~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~ 144 (414)
T KOG0531|consen 69 ESLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKE 144 (414)
T ss_pred HHhHhHHhhccchhhhhh-hhcccccccceeeeeccccchhh-cccchhhhhcchheecccccccccc--chhhccchhh
Confidence 345666677777777763 34446777788888888887763 3233667778888888888777553 3556666777
Q ss_pred EEeecCCCCCCChhhhhcCcCCCEEEecCCCCCCCCc-ccccCCCCCCeEEccCCCCCCCCchhhcCCCCCCEEEccCcc
Q 038019 166 LYIDSCGAGGEIPSTFAKLRNMQTLWASDNPFTGKIP-DFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLESLQMSDIY 244 (866)
Q Consensus 166 L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p-~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~n~ 244 (866)
|++.+|.++.. ..+..+++|+.+++++|++...-+ . ...+.+|+.+++.+|.+... ..+..+..+..+++..|.
T Consensus 145 L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n~ 219 (414)
T KOG0531|consen 145 LNLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREI--EGLDLLKKLVLLSLLDNK 219 (414)
T ss_pred heeccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcc--cchHHHHHHHHhhccccc
Confidence 77777777643 234446777777777777764433 1 45666777777777776532 222233333333444444
Q ss_pred CCCCCchhhhcCC--CCCceeccCcccccCCCcccCCCCCcCEEeeecCcCcccCCcccCCCCCCcEEECcCCCCc
Q 038019 245 NVSSSLDFVMSLK--NLTDLSLRNALITGTIPFGIGELQMLQILDLSFNNLTGQIPATLFNIDSLEYLFLGNNSLS 318 (866)
Q Consensus 245 ~~~~~~~~~~~l~--~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~ 318 (866)
+..... +..+. .|+.+++++|.+... +..+..+.++..|++.+|++... ..+...+.+..+.+..|.+.
T Consensus 220 i~~~~~--l~~~~~~~L~~l~l~~n~i~~~-~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~ 290 (414)
T KOG0531|consen 220 ISKLEG--LNELVMLHLRELYLSGNRISRS-PEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLA 290 (414)
T ss_pred ceeccC--cccchhHHHHHHhcccCccccc-cccccccccccccchhhcccccc--ccccccchHHHhccCcchhc
Confidence 332111 11111 255556666655422 13344455555555555555421 11223344444444444443
|
|
| >cd05627 STKc_NDR2 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 2 | Back alignment and domain information |
|---|
Probab=98.87 E-value=5.5e-10 Score=124.47 Aligned_cols=78 Identities=22% Similarity=0.239 Sum_probs=60.1
Q ss_pred CcccCHHHHHHHhcCCccccccCCCCceeE---------------------------------EEeecCCCCccCceeee
Q 038019 643 PNIFGYAELRSATKDFNRSNKLGEGGYGPV---------------------------------YKVTANSYGYLAPEYAM 689 (866)
Q Consensus 643 ~~~~~~~~~~~~~~dF~~~~~lg~g~~g~v---------------------------------y~~~~gt~gY~aPE~~~ 689 (866)
.|++...+...++.|||.++.+..+..+.. .....||+.|||||++.
T Consensus 130 ~NIli~~~~~vkL~DfG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~~~ 209 (360)
T cd05627 130 DNLLLDAKGHVKLSDFGLCTGLKKAHRTEFYRNLTHNPPSDFSFQNMNSKRKAETWKKNRRQLAYSTVGTPDYIAPEVFM 209 (360)
T ss_pred HHEEECCCCCEEEeeccCCcccccccccccccccccCCcccccccccccccccccccccccccccccCCCccccCHHHHc
Confidence 366666666778899998876643321110 11346999999999999
Q ss_pred cCCCCchhHHHHHHHHHHHHHhcCCCCCCCc
Q 038019 690 RGHLTEKADVFSFGVVALEIISGRASSDKSL 720 (866)
Q Consensus 690 ~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~ 720 (866)
+..++.++|||||||+++||+||+.|+....
T Consensus 210 ~~~~~~~~DiwSlGvilyel~tG~~Pf~~~~ 240 (360)
T cd05627 210 QTGYNKLCDWWSLGVIMYEMLIGYPPFCSET 240 (360)
T ss_pred CCCCCCcceeccccceeeecccCCCCCCCCC
Confidence 9999999999999999999999999997543
|
Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. In addition, NDR2 plays a role in regul |
| >KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.6e-09 Score=130.78 Aligned_cols=253 Identities=18% Similarity=0.180 Sum_probs=149.1
Q ss_pred CCCCCCEEEccCCCCCCCCCccccCCCCcCEEeccCCc--CCCCCCccccCCCCCCEeeccCCCCCCCCchhhcCCCCcc
Q 038019 87 TLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHND--FSGPVPRELGNLKELTVLAFGTNNFSGALPPELGNLAKLE 164 (866)
Q Consensus 87 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~--l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~ 164 (866)
+....+.+.+-+|.+. .++... ..++|+.|-+..|. +.....+.|..++.|++|||++|.--+.+|..+++|-+|+
T Consensus 521 ~~~~~rr~s~~~~~~~-~~~~~~-~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~Lr 598 (889)
T KOG4658|consen 521 SWNSVRRMSLMNNKIE-HIAGSS-ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLR 598 (889)
T ss_pred chhheeEEEEeccchh-hccCCC-CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhh
Confidence 3456677777777765 334332 34478888888885 4434444577788888888888777678888888888888
Q ss_pred EEEeecCCCCCCChhhhhcCcCCCEEEecCCCCCCCCcccccCCCCCCeEEccCCCC--CCCCchhhcCCCCCCEEEccC
Q 038019 165 QLYIDSCGAGGEIPSTFAKLRNMQTLWASDNPFTGKIPDFIGNWTKLKSLRFQGNSF--QGPIPSSLSKLASLESLQMSD 242 (866)
Q Consensus 165 ~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l--~~~~p~~~~~l~~L~~L~l~~ 242 (866)
+|+|+...+. .+|..+.+|+.|.+|++..+.-...+|..+..+++|++|.+..... ....-..+.++.+|+.|.+..
T Consensus 599 yL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~ 677 (889)
T KOG4658|consen 599 YLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITI 677 (889)
T ss_pred cccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeec
Confidence 8888888776 6788888888888888887766556666667788888888766542 222334445556666555533
Q ss_pred ccCCCCCchhhhcCCCCC----ceeccCcccccCCCcccCCCCCcCEEeeecCcCcccCCcccCCC------CCCcEEEC
Q 038019 243 IYNVSSSLDFVMSLKNLT----DLSLRNALITGTIPFGIGELQMLQILDLSFNNLTGQIPATLFNI------DSLEYLFL 312 (866)
Q Consensus 243 n~~~~~~~~~~~~l~~L~----~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l------~~L~~L~L 312 (866)
... .....+..+..|. .+.+.++.. ...+..+..+.+|+.|.+.++.+........... +++..+.+
T Consensus 678 ~s~--~~~e~l~~~~~L~~~~~~l~~~~~~~-~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~ 754 (889)
T KOG4658|consen 678 SSV--LLLEDLLGMTRLRSLLQSLSIEGCSK-RTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSI 754 (889)
T ss_pred chh--HhHhhhhhhHHHHHHhHhhhhccccc-ceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHh
Confidence 211 0111122222222 222222221 1334456777888888888887764333222211 12222222
Q ss_pred cCCC-CcccCCcccCCCCCEEEeeCCCCCCccCc
Q 038019 313 GNNS-LSGTLPDQKSENLQKIDLSHNHLSGTFPL 345 (866)
Q Consensus 313 ~~N~-l~g~~p~~~~~~L~~L~Ls~N~l~g~~p~ 345 (866)
.++. +....+..+.++|+.|++.+...-..+..
T Consensus 755 ~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i~ 788 (889)
T KOG4658|consen 755 LNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDIIP 788 (889)
T ss_pred hccccccccchhhccCcccEEEEecccccccCCC
Confidence 2221 11122223457888888887765544433
|
|
| >cd05625 STKc_LATS1 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 1 | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.4e-09 Score=122.20 Aligned_cols=45 Identities=27% Similarity=0.414 Sum_probs=41.4
Q ss_pred ecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCCc
Q 038019 676 TANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSL 720 (866)
Q Consensus 676 ~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~ 720 (866)
..||+.|||||++.+..++.++|||||||+++||+||+.|+....
T Consensus 208 ~~gt~~Y~aPE~~~~~~~~~~~DiwSlGvil~elltG~~Pf~~~~ 252 (382)
T cd05625 208 LVGTPNYIAPEVLLRTGYTQLCDWWSVGVILYEMLVGQPPFLAQT 252 (382)
T ss_pred cccCcccCCHHHhcCCCCCCeeeEEechHHHHHHHhCCCCCCCCC
Confidence 468999999999999999999999999999999999999997543
|
Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. Promoter methylation, loss of heterozygosity, and missense mutations targeting the LATS1 gene have also been found in human sarcomas and ovarian cancers. In addition, decreased expression of LATS1 is associated with an aggressive phenotype an |
| >cd07880 STKc_p38gamma_MAPK12 Catalytic domain of the Serine/Threonine Kinase, p38gamma Mitogen-Activated Protein Kinase | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.7e-09 Score=118.00 Aligned_cols=135 Identities=14% Similarity=0.158 Sum_probs=82.4
Q ss_pred CcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeec-CCCCchhHHHHHHHHHHHHHhcCCCCCCCch
Q 038019 643 PNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMR-GHLTEKADVFSFGVVALEIISGRASSDKSLD 721 (866)
Q Consensus 643 ~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~-~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~ 721 (866)
.|++...+...++.|||.+..+.... .+..++..|+|||+... ..++.++|||||||+++|+++|+.|+.....
T Consensus 147 ~Nill~~~~~~kl~dfg~~~~~~~~~-----~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~ll~~l~~g~~pf~~~~~ 221 (343)
T cd07880 147 GNLAVNEDCELKILDFGLARQTDSEM-----TGYVVTRWYRAPEVILNWMHYTQTVDIWSVGCIMAEMLTGKPLFKGHDH 221 (343)
T ss_pred HHEEEcCCCCEEEeecccccccccCc-----cccccCCcccCHHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCH
Confidence 35666666667889999888765432 23457889999998865 4689999999999999999999999875432
Q ss_pred hhhh-cH--------HHHHHHHhhcC------CcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 722 MEKI-YL--------LEWAWNLHENN------QSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 722 ~~~~-~l--------~~~~~~~~~~~------~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
.... .. .+|........ .......+.+..........+.++..+|++.+|++|||+.+|+.
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~R~t~~~~l~ 297 (343)
T cd07880 222 LDQLMEIMKVTGTPSKEFVQKLQSEDAKNYVKKLPRFRKKDFRSLLPNANPLAVNVLEKMLVLDAESRITAAEALA 297 (343)
T ss_pred HHHHHHHHHhcCCCCHHHHHhhcchhHHHHHHhccccCcchHHHhccCCChHHHHHHHHHcCCChhhCCCHHHHhc
Confidence 1110 00 01110000000 00000000000000111224567778999999999999999983
|
Serine/Threonine Kinases (STKs), p38gamma subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38gamma subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38gamma, also called MAPK12 |
| >cd05580 STKc_PKA Catalytic domain of the Protein Serine/Threonine Kinase, cAMP-dependent protein kinase | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.5e-09 Score=117.09 Aligned_cols=112 Identities=13% Similarity=0.148 Sum_probs=76.6
Q ss_pred CcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCCchh
Q 038019 643 PNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSLDM 722 (866)
Q Consensus 643 ~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~~ 722 (866)
.|++...+...++.|||.++.+.... ....|+++|+|||+...+..+.++||||||++++||+||+.|+......
T Consensus 130 ~nili~~~~~~kl~dfg~~~~~~~~~-----~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~ 204 (290)
T cd05580 130 ENLLLDSDGYIKITDFGFAKRVKGRT-----YTLCGTPEYLAPEIILSKGYGKAVDWWALGILIYEMLAGYPPFFDDNPI 204 (290)
T ss_pred HHEEECCCCCEEEeeCCCccccCCCC-----CCCCCCccccChhhhcCCCCCccccHHHHHHHHHHHHhCCCCCCCCCHH
Confidence 35666556667889999888776542 2335889999999998888999999999999999999999998753311
Q ss_pred hhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCC
Q 038019 723 EKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRP 775 (866)
Q Consensus 723 ~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RP 775 (866)
. .. .....+. +.+..... ..+.++...|++.+|.+||
T Consensus 205 ~---~~----~~~~~~~------~~~~~~~~---~~l~~li~~~l~~~p~~R~ 241 (290)
T cd05580 205 Q---IY----EKILEGK------VRFPSFFS---PDAKDLIRNLLQVDLTKRL 241 (290)
T ss_pred H---HH----HHHhcCC------ccCCccCC---HHHHHHHHHHccCCHHHcc
Confidence 1 11 1111111 11111112 2344566699999999998
|
Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This subfamily is composed of the cAMP-dependent proteins kinases, PKA and PRKX. The inactive PKA holoenzyme is a heterotetramer composed of two phosphorylated and active catalytic (C) subunits with a dimer of regulatory (R) subunits. Activation is achieved through the binding of the important second messenger cAMP to the R subunits, which leads to the dissociation of PKA into the R dimer and two active C subunits. PKA is present ubi |
| >cd07854 STKc_MAPK4_6 Catalytic domain of the Serine/Threonine Kinases, Mitogen-Activated Protein Kinases 4 and 6 | Back alignment and domain information |
|---|
Probab=98.83 E-value=3.6e-09 Score=117.05 Aligned_cols=139 Identities=15% Similarity=0.169 Sum_probs=78.5
Q ss_pred cccCH-HHHHHHhcCCccccccCCCCceeEE-EeecCCCCccCceeeec-CCCCchhHHHHHHHHHHHHHhcCCCCCCCc
Q 038019 644 NIFGY-AELRSATKDFNRSNKLGEGGYGPVY-KVTANSYGYLAPEYAMR-GHLTEKADVFSFGVVALEIISGRASSDKSL 720 (866)
Q Consensus 644 ~~~~~-~~~~~~~~dF~~~~~lg~g~~g~vy-~~~~gt~gY~aPE~~~~-~~~t~ksDVySfGvvLlEl~tg~~p~~~~~ 720 (866)
|++.. +....++.|||.++.+.....+..+ ....++..|+|||+... ..++.|+|||||||+++||++|+.|+....
T Consensus 144 Nili~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwSlGvil~el~~g~~pf~~~~ 223 (342)
T cd07854 144 NVFINTEDLVLKIGDFGLARIVDPHYSHKGYLSEGLVTKWYRSPRLLLSPNNYTKAIDMWAAGCIFAEMLTGKPLFAGAH 223 (342)
T ss_pred HEEEcCCCceEEECCcccceecCCccccccccccccccccccCHHHHhCccccCchhhHHHHHHHHHHHHhCCCCCCCCC
Confidence 44443 2334577899988765322111111 12357889999997654 568899999999999999999999997543
Q ss_pred hhhhhcHHHHHHHHhhc---CCc--------c-cccCCc--ccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 721 DMEKIYLLEWAWNLHEN---NQS--------F-GLVDPT--LTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 721 ~~~~~~l~~~~~~~~~~---~~~--------~-~~~d~~--l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
..+.............. ... . ....+. ..........++.+++..|++.+|++||++.||+.
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~ell~ 299 (342)
T cd07854 224 ELEQMQLILESVPVVREEDRNELLNVIPSFVRNDGGEPRRPLRDLLPGVNPEALDFLEQILTFNPMDRLTAEEALM 299 (342)
T ss_pred HHHHHHHHHHhcCCCChHHhhhhhhhhhhhhhhcccccCCCHHHHccCCCHHHHHHHHHHhCCCchhccCHHHHhC
Confidence 32211111000000000 000 0 000000 00000011234556778999999999999999974
|
Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 4 (MAPK4) and MAPK6 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK4/6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. MAPK4 is also called ERK4 or p63MAPK, while MAPK6 is also called ERK3 or p97MAPK. MAPK4 and MAPK6 are atypical MAPKs that are not regulated by MAP2Ks. MAPK6 is expressed ubiquitously with highest amounts in brain and skeletal muscle. It may be involved in the control of cell differentiation by negatively regulating cell cycle progressi |
| >cd05576 STKc_RPK118_like Catalytic domain of the Protein Serine/Threonine Kinases, RPK118 and similar proteins | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.3e-09 Score=113.81 Aligned_cols=112 Identities=18% Similarity=0.139 Sum_probs=74.7
Q ss_pred cccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCCchhh
Q 038019 644 NIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSLDME 723 (866)
Q Consensus 644 ~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~~~ 723 (866)
|++...+...++.|||..+.++... .+..++..|+|||+...+.++.++||||+||+++|+++|+.|++......
T Consensus 115 Nil~~~~~~~~l~df~~~~~~~~~~-----~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~il~el~~g~~~~~~~~~~~ 189 (237)
T cd05576 115 NILLDDRGHIQLTYFSRWSEVEDSC-----DGEAVENMYCAPEVGGISEETEACDWWSLGAILFELLTGKTLVECHPSGI 189 (237)
T ss_pred HEEEcCCCCEEEecccchhcccccc-----ccCCcCccccCCcccCCCCCCchhhHHHHHHHHHHHHHCcchhhcCchhc
Confidence 5555555556778898777665432 22346778999999988889999999999999999999998765321100
Q ss_pred hhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHH
Q 038019 724 KIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRV 780 (866)
Q Consensus 724 ~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V 780 (866)
. ......+..... ..+.++..+|++.||++||++.++
T Consensus 190 ------------~-----~~~~~~~~~~~~---~~~~~li~~~l~~dp~~R~~~~~~ 226 (237)
T cd05576 190 ------------N-----THTTLNIPEWVS---EEARSLLQQLLQFNPTERLGAGVA 226 (237)
T ss_pred ------------c-----cccccCCcccCC---HHHHHHHHHHccCCHHHhcCCCcc
Confidence 0 000011111111 234456669999999999998543
|
Serine/Threonine Kinases (STKs), RPK118-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RPK118-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily show similarity to human RPK118, which contains an N-terminal Phox homology (PX) domain, a Microtubule Interacting and Trafficking (MIT) domain, and a kinase domain containing a long insert. Also included in the family is human RPK60 (or ribosomal protein S6 kinase-like 1), which also contains MIT and kinase domains but lacks a PX domain. RPK118 binds sphingosine kinase, a key enzyme in the synthesis of sphingosine 1-phospha |
| >KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.83 E-value=4e-10 Score=113.22 Aligned_cols=130 Identities=18% Similarity=0.173 Sum_probs=77.6
Q ss_pred CCCCcCEEeccCCcCCCCCCccccCCCCCCEeeccCCCCCCCCchhhcCCCCccEEEeecCCCCCCChhhhhcCcCCCEE
Q 038019 111 NLSRLMFLSFSHNDFSGPVPRELGNLKELTVLAFGTNNFSGALPPELGNLAKLEQLYIDSCGAGGEIPSTFAKLRNMQTL 190 (866)
Q Consensus 111 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 190 (866)
....|++|||++|.|+ .+..+..-+++++.|++|+|.+... +.+..|++|++|+|++|.++.. -.+-.+|-|+++|
T Consensus 282 TWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls~~-~Gwh~KLGNIKtL 357 (490)
T KOG1259|consen 282 TWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLAEC-VGWHLKLGNIKTL 357 (490)
T ss_pred hHhhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhHhh-hhhHhhhcCEeee
Confidence 3445666666666665 4555566666666666666666532 3366666666677766665532 2333456666777
Q ss_pred EecCCCCCCCCcccccCCCCCCeEEccCCCCCCC-CchhhcCCCCCCEEEccCccCC
Q 038019 191 WASDNPFTGKIPDFIGNWTKLKSLRFQGNSFQGP-IPSSLSKLASLESLQMSDIYNV 246 (866)
Q Consensus 191 ~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~-~p~~~~~l~~L~~L~l~~n~~~ 246 (866)
.|+.|.+... ..++.|-+|..|++++|++... --..+++++.|+.|.|.+|.+.
T Consensus 358 ~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 358 KLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred ehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence 7777766422 3455566667777777766522 1245666777777776666554
|
|
| >KOG0032 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.83 E-value=6.6e-09 Score=114.56 Aligned_cols=117 Identities=17% Similarity=0.199 Sum_probs=85.8
Q ss_pred HHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCCchhhhhcHHHHH
Q 038019 652 RSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSLDMEKIYLLEWA 731 (866)
Q Consensus 652 ~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~~~~~~l~~~~ 731 (866)
..++.|||++..+.. +....+.+||++|+|||......|+..+||||.||+++.|++|..||..........
T Consensus 177 ~ik~~DFGla~~~~~---~~~~~~~~Gtp~y~APEvl~~~~y~~~~DiWS~Gvi~yiLL~G~~PF~~~~~~~~~~----- 248 (382)
T KOG0032|consen 177 RIKLIDFGLAKFIKP---GERLHTIVGTPEYVAPEVLGGRPYGDEVDVWSIGVILYILLSGVPPFWGETEFEIFL----- 248 (382)
T ss_pred cEEEeeCCCceEccC---CceEeeecCCccccCchhhcCCCCCcccchhHHHHHHHHHhhCCCCCcCCChhHHHH-----
Confidence 567899999998876 567888999999999999999999999999999999999999999998654322111
Q ss_pred HHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 038019 732 WNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAM 783 (866)
Q Consensus 732 ~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~ 783 (866)
....+.. +.-++..... .+.+..+++ .++..||.+|+|..++++.
T Consensus 249 --~i~~~~~-~f~~~~w~~i-s~~akd~i~---~ll~~dp~~R~ta~~~L~H 293 (382)
T KOG0032|consen 249 --AILRGDF-DFTSEPWDDI-SESAKDFIR---KLLEFDPRKRLTAAQALQH 293 (382)
T ss_pred --HHHcCCC-CCCCCCcccc-CHHHHHHHH---HhcccCcccCCCHHHHhcC
Confidence 1222222 1111111111 234444444 8899999999999999873
|
|
| >cd06653 STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=98.82 E-value=3e-09 Score=112.98 Aligned_cols=124 Identities=16% Similarity=0.171 Sum_probs=78.2
Q ss_pred cccCHHHHHHHhcCCccccccCCCC-ceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCCchh
Q 038019 644 NIFGYAELRSATKDFNRSNKLGEGG-YGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSLDM 722 (866)
Q Consensus 644 ~~~~~~~~~~~~~dF~~~~~lg~g~-~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~~ 722 (866)
|++...+...++.|||.++.+.... -+.-+....|+..|+|||+......+.++|||||||+++|+++|+.|+......
T Consensus 136 ni~i~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~ 215 (264)
T cd06653 136 NILRDSAGNVKLGDFGASKRIQTICMSGTGIKSVTGTPYWMSPEVISGEGYGRKADVWSVACTVVEMLTEKPPWAEYEAM 215 (264)
T ss_pred HEEEcCCCCEEECccccccccccccccCccccccCCcccccCHhhhcCCCCCccccHHHHHHHHHHHHhCCCCCCccCHH
Confidence 4555555556788999887653210 011123446889999999999888999999999999999999999998643221
Q ss_pred hhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 723 EKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 723 ~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
. .+ ..... .-.++.+.....++ +.++...|++ +|.+||+..++..
T Consensus 216 ~---~~---~~~~~-----~~~~~~~p~~~~~~---~~~~i~~~l~-~~~~r~~~~~~~~ 260 (264)
T cd06653 216 A---AI---FKIAT-----QPTKPMLPDGVSDA---CRDFLKQIFV-EEKRRPTAEFLLR 260 (264)
T ss_pred H---HH---HHHHc-----CCCCCCCCcccCHH---HHHHHHHHhc-CcccCccHHHHhc
Confidence 1 11 11111 01112222222233 3444558888 5799999987654
|
Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain, functionally uncharacterized subgroup 1. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MEKK3-like subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phospho |
| >KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.81 E-value=3.9e-10 Score=127.62 Aligned_cols=237 Identities=24% Similarity=0.186 Sum_probs=138.0
Q ss_pred CCCEEEccCCCCCCCCCccccCCCCcCEEeccCCcCCCCCCccccCCCCCCEeeccCCCCCCCCchhhcCCCCccEEEee
Q 038019 90 YLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKELTVLAFGTNNFSGALPPELGNLAKLEQLYID 169 (866)
Q Consensus 90 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~ 169 (866)
.++.++...+.+...--. ...+..++.+++..|.+.. +-..+..+++|+.|++.+|++... ...+..+++|++|+|+
T Consensus 50 ~~~~~~~~~~~~~~~~~~-~~~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls 126 (414)
T KOG0531|consen 50 DLEEIDLIFNLDGSDEDL-VESLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLS 126 (414)
T ss_pred hhhhhcchhccccchhhh-HHHhHhHHhhccchhhhhh-hhcccccccceeeeeccccchhhc-ccchhhhhcchheecc
Confidence 455556655544321111 1466778888899998873 344578888999999999998744 2337778888888888
Q ss_pred cCCCCCCChhhhhcCcCCCEEEecCCCCCCCCcccccCCCCCCeEEccCCCCCCCCc-hhhcCCCCCCEEEccCccCCCC
Q 038019 170 SCGAGGEIPSTFAKLRNMQTLWASDNPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIP-SSLSKLASLESLQMSDIYNVSS 248 (866)
Q Consensus 170 ~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~l~~n~~~~~ 248 (866)
+|.|+...+ +..++.|+.|++.+|.|+.. ..+..+++|+.+++++|++...-+ . ...+.+|+.+++..|.+...
T Consensus 127 ~N~I~~i~~--l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i 201 (414)
T KOG0531|consen 127 FNKITKLEG--LSTLTLLKELNLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREI 201 (414)
T ss_pred ccccccccc--hhhccchhhheeccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcc
Confidence 888876643 55667788888888888743 345557788888888888874433 1 45666666666666655422
Q ss_pred CchhhhcCCCCCceeccCcccccCCCcccCCCC--CcCEEeeecCcCcccCCcccCCCCCCcEEECcCCCCcccCCcccC
Q 038019 249 SLDFVMSLKNLTDLSLRNALITGTIPFGIGELQ--MLQILDLSFNNLTGQIPATLFNIDSLEYLFLGNNSLSGTLPDQKS 326 (866)
Q Consensus 249 ~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~--~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~~p~~~~ 326 (866)
. .+..+..+..+++..|.++..-+ +..+. .|+.+++++|.+. ..+..+..+..+..|++.+|++...-.....
T Consensus 202 ~--~~~~~~~l~~~~l~~n~i~~~~~--l~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~~~~~~~ 276 (414)
T KOG0531|consen 202 E--GLDLLKKLVLLSLLDNKISKLEG--LNELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNLEGLERL 276 (414)
T ss_pred c--chHHHHHHHHhhcccccceeccC--cccchhHHHHHHhcccCccc-cccccccccccccccchhhcccccccccccc
Confidence 2 12222233333555555543221 11112 2555666666654 2223444455555555555555533222222
Q ss_pred CCCCEEEeeCCCC
Q 038019 327 ENLQKIDLSHNHL 339 (866)
Q Consensus 327 ~~L~~L~Ls~N~l 339 (866)
..+..+.+..|.+
T Consensus 277 ~~~~~~~~~~~~~ 289 (414)
T KOG0531|consen 277 PKLSELWLNDNKL 289 (414)
T ss_pred chHHHhccCcchh
Confidence 3333344444433
|
|
| >cd05581 STKc_PDK1 Catalytic domain of the Protein Serine/Threonine Kinase, Phosphoinositide-dependent kinase 1 | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.6e-09 Score=115.81 Aligned_cols=122 Identities=11% Similarity=0.163 Sum_probs=81.3
Q ss_pred cccCHHHHHHHhcCCccccccCCCCce------------------eEEEeecCCCCccCceeeecCCCCchhHHHHHHHH
Q 038019 644 NIFGYAELRSATKDFNRSNKLGEGGYG------------------PVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVV 705 (866)
Q Consensus 644 ~~~~~~~~~~~~~dF~~~~~lg~g~~g------------------~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvv 705 (866)
|++...+...++.|||.+..++.-... .......++..|+|||......++.++||||||++
T Consensus 132 ni~i~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~Di~slG~~ 211 (280)
T cd05581 132 NILLDKDMHIKITDFGTAKVLDPNSSPESNKGDATNIDSQIEKNRRRFASFVGTAEYVSPELLNEKPAGKSSDLWALGCI 211 (280)
T ss_pred HeEECCCCCEEecCCccccccCCccccccCCCCCccccccccccccccccccCCccccCHHHhCCCCCChhhhHHHHHHH
Confidence 556555566778889888776542211 12223467899999999988889999999999999
Q ss_pred HHHHHhcCCCCCCCchhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCH----HHHH
Q 038019 706 ALEIISGRASSDKSLDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPM----SRVV 781 (866)
Q Consensus 706 LlEl~tg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm----~~V~ 781 (866)
++|+++|+.|+...... .....+. . . +..+ +......+.+++..|++.+|++||++ ++++
T Consensus 212 l~~l~~g~~p~~~~~~~---~~~~~~~---~-~------~~~~---~~~~~~~~~~li~~~l~~~p~~R~~~~~~~~~ll 275 (280)
T cd05581 212 IYQMLTGKPPFRGSNEY---LTFQKIL---K-L------EYSF---PPNFPPDAKDLIEKLLVLDPQDRLGVNEGYDELK 275 (280)
T ss_pred HHHHHhCCCCCCCccHH---HHHHHHH---h-c------CCCC---CCccCHHHHHHHHHHhcCCHhhCCCcccCHHHHh
Confidence 99999999998754311 1111111 0 0 0011 11112345667779999999999999 6654
|
Serine/Threonine Kinases (STKs), Phosphoinositide-dependent kinase 1 (PDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PDK1 carries an N-terminal catalytic domain and a C-terminal pleckstrin homology (PH) domain that binds phosphoinositides. It phosphorylates the activation loop of AGC kinases that are regulated by PI3K such as PKB, SGK, and PKC, among others, and is crucial for their activation. Thus, it contributes in regulating many processes including metabolism, growth, proliferation, and survival. PDK1 also has the ability to auto |
| >KOG0616 consensus cAMP-dependent protein kinase catalytic subunit (PKA) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.80 E-value=3.9e-09 Score=106.52 Aligned_cols=73 Identities=18% Similarity=0.273 Sum_probs=63.9
Q ss_pred cccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCCch
Q 038019 644 NIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSLD 721 (866)
Q Consensus 644 ~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~ 721 (866)
|++.+.....++.|||.++.+.. ..| ..+||+-|+|||.+.+..+...+|.|+|||+++||+.|.+||....+
T Consensus 174 NiLlD~~G~iKitDFGFAK~v~~----rT~-TlCGTPeYLAPEii~sk~ynkavDWWalGVLIYEMlaG~pPF~~~~~ 246 (355)
T KOG0616|consen 174 NLLLDQNGHIKITDFGFAKRVSG----RTW-TLCGTPEYLAPEIIQSKGYNKAVDWWALGVLIYEMLAGYPPFYDDNP 246 (355)
T ss_pred HeeeccCCcEEEEeccceEEecC----cEE-EecCCccccChHHhhcCCCCcchhHHHHHHHHHHHHcCCCCCcCCCh
Confidence 78888888899999999998753 233 35799999999999999999999999999999999999999976544
|
|
| >KOG0574 consensus STE20-like serine/threonine kinase MST [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.4e-09 Score=109.28 Aligned_cols=130 Identities=19% Similarity=0.241 Sum_probs=89.8
Q ss_pred cCCCCCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCC
Q 038019 638 GIGSKPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSD 717 (866)
Q Consensus 638 ~~~~~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~ 717 (866)
+....-|+++..+..+++.|||.+..+-.- . .-...+.||+-|||||++..-.|..++||||+||.-.||..||+|+.
T Consensus 153 RDIKAGNILLNT~G~AKLADFGVAGQLTDT-M-AKRNTVIGTPFWMAPEVI~EIGY~~~ADIWSLGITaIEMAEG~PPYs 230 (502)
T KOG0574|consen 153 RDIKAGNILLNTDGIAKLADFGVAGQLTDT-M-AKRNTVIGTPFWMAPEVIEEIGYDTKADIWSLGITAIEMAEGRPPYS 230 (502)
T ss_pred hhcccccEEEcccchhhhhhccccchhhhh-H-HhhCccccCcccccHHHHHHhccchhhhHhhhcchhhhhhcCCCCcc
Confidence 334456889999999999999987665421 0 01123579999999999999999999999999999999999999997
Q ss_pred CCchhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 718 KSLDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 718 ~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
..-+.....++ ... -.|.. ..+++....+-+....|+-..|++|-|+-++++
T Consensus 231 DIHPMRAIFMI-------PT~-----PPPTF-~KPE~WS~~F~DFi~~CLiK~PE~R~TA~~L~~ 282 (502)
T KOG0574|consen 231 DIHPMRAIFMI-------PTK-----PPPTF-KKPEEWSSEFNDFIRSCLIKKPEERKTALRLCE 282 (502)
T ss_pred cccccceeEec-------cCC-----CCCCC-CChHhhhhHHHHHHHHHhcCCHHHHHHHHHHhh
Confidence 65443321110 000 01111 122333344555566999999999998877653
|
|
| >cd05123 STKc_AGC Catalytic domain of AGC family Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=98.79 E-value=3.9e-09 Score=110.80 Aligned_cols=119 Identities=20% Similarity=0.205 Sum_probs=80.5
Q ss_pred CcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCCchh
Q 038019 643 PNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSLDM 722 (866)
Q Consensus 643 ~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~~ 722 (866)
.|++...+...++.|||.+....... .......++.+|++||...+...+.++||||||++++|+++|+.|+.....
T Consensus 122 ~ni~~~~~~~~~l~d~~~~~~~~~~~--~~~~~~~~~~~~~~Pe~~~~~~~~~~~D~~slG~~~~~l~~g~~p~~~~~~- 198 (250)
T cd05123 122 ENILLDADGHIKLTDFGLAKELSSEG--SRTNTFCGTPEYLAPEVLLGKGYGKAVDWWSLGVLLYEMLTGKPPFYAEDR- 198 (250)
T ss_pred ceEEEcCCCcEEEeecCcceecccCC--CcccCCcCCccccChHHhCCCCCCchhhHHHHHHHHHHHHHCCCCCCCCCH-
Confidence 35666666667788998887765432 112334678899999999888899999999999999999999999875332
Q ss_pred hhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHH
Q 038019 723 EKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSR 779 (866)
Q Consensus 723 ~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~ 779 (866)
..+...+.. + ...+.... ...+.++...|++.+|++||++.+
T Consensus 199 --~~~~~~~~~----~------~~~~~~~~---~~~l~~~i~~~l~~~p~~R~~~~~ 240 (250)
T cd05123 199 --KEIYEKILK----D------PLRFPEFL---SPEARDLISGLLQKDPTKRLGSGG 240 (250)
T ss_pred --HHHHHHHhc----C------CCCCCCCC---CHHHHHHHHHHhcCCHhhCCCccc
Confidence 111221111 1 11111111 234455667999999999999965
|
Serine/Threonine Kinases (STKs), AGC (Protein Kinases A, G and C) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The AGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and Phosphoinositide 3-Kinase (PI3K). Members of this family include cAMP-dependent Protein Kinase (PKA), cGMP-dependent Protein Kinase (PKG), Protein Kinase C (PKC), Protein Kinase B (PKB), G protein-coupled Receptor Kinase (GRK), Serum- and Glucocorticoid-induced Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase (p70S6K or S6K), among others. AGC kinases share an activation mechanism based on the phosphorylation of up to three sites: the activation loop (A-loop), the hydrophobic motif (HM) and the |
| >KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.78 E-value=6.6e-09 Score=103.12 Aligned_cols=123 Identities=15% Similarity=0.193 Sum_probs=83.0
Q ss_pred cccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCC---CchhHHHHHHHHHHHHHhcCCCCCCCc
Q 038019 644 NIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHL---TEKADVFSFGVVALEIISGRASSDKSL 720 (866)
Q Consensus 644 ~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~---t~ksDVySfGvvLlEl~tg~~p~~~~~ 720 (866)
+++.++|+.++++ +++-.|.---.|.+-.+.||+||.++...- -..+|.|||.|+|||+.|...||....
T Consensus 321 hvmidedltaris-------mad~kfsfqe~gr~y~pawmspealqrkped~n~raadmwsfaillwel~trevpfadls 393 (448)
T KOG0195|consen 321 HVMIDEDLTARIS-------MADTKFSFQEVGRAYSPAWMSPEALQRKPEDLNIRAADMWSFAILLWELNTREVPFADLS 393 (448)
T ss_pred eEEecchhhhhee-------cccceeeeeccccccCcccCCHHHHhcCchhcchhhhhHHHHHHHHHHhhccccccccCC
Confidence 4567777776553 122223333344555789999999876543 367899999999999999999998776
Q ss_pred hhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhcC
Q 038019 721 DMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLAGD 787 (866)
Q Consensus 721 ~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~~~ 787 (866)
+.+...-+ ..|-+.+.++......+.+ ++--|..+||.+||.+..||-.||+.
T Consensus 394 pmecgmki-----------aleglrv~ippgis~hm~k---lm~icmnedpgkrpkfdmivpilekm 446 (448)
T KOG0195|consen 394 PMECGMKI-----------ALEGLRVHIPPGISRHMNK---LMNICMNEDPGKRPKFDMIVPILEKM 446 (448)
T ss_pred chhhhhhh-----------hhccccccCCCCccHHHHH---HHHHHhcCCCCcCCCcceehhhHHHh
Confidence 65542211 1223344443333334444 44569999999999999999999864
|
|
| >cd05613 STKc_MSK1_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 1 | Back alignment and domain information |
|---|
Probab=98.76 E-value=4.3e-09 Score=113.41 Aligned_cols=119 Identities=17% Similarity=0.198 Sum_probs=76.2
Q ss_pred cccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecC--CCCchhHHHHHHHHHHHHHhcCCCCCCCch
Q 038019 644 NIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRG--HLTEKADVFSFGVVALEIISGRASSDKSLD 721 (866)
Q Consensus 644 ~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~--~~t~ksDVySfGvvLlEl~tg~~p~~~~~~ 721 (866)
|++..++...++.|||.++.+..+..... ....|+..|+|||+...+ .++.++||||||++++||+||+.|+.....
T Consensus 135 nil~~~~~~~kl~dfg~~~~~~~~~~~~~-~~~~~~~~y~aPE~~~~~~~~~~~~~Dv~slG~~l~~ll~g~~p~~~~~~ 213 (290)
T cd05613 135 NILLDSNGHVVLTDFGLSKEFHEDEVERA-YSFCGTIEYMAPDIVRGGDGGHDKAVDWWSMGVLMYELLTGASPFTVDGE 213 (290)
T ss_pred HeEECCCCCEEEeeCccceeccccccccc-ccccCCcccCChhhccCCCCCCCccccHHHHHHHHHHHhcCCCCCCcCCc
Confidence 56666666778899998887654322111 124588999999998753 478899999999999999999999864221
Q ss_pred hhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCC
Q 038019 722 MEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRP 775 (866)
Q Consensus 722 ~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RP 775 (866)
. ....++....... ++.. +......+..+...|++.+|++||
T Consensus 214 ~--~~~~~~~~~~~~~-------~~~~---~~~~~~~~~~ll~~~l~~~p~~R~ 255 (290)
T cd05613 214 K--NSQAEISRRILKS-------EPPY---PQEMSALAKDIIQRLLMKDPKKRL 255 (290)
T ss_pred c--ccHHHHHHHhhcc-------CCCC---CccCCHHHHHHHHHHhcCCHHHhc
Confidence 1 1122222221111 1111 111122345566799999999997
|
Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK1, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph |
| >KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.76 E-value=4.7e-09 Score=123.85 Aligned_cols=132 Identities=18% Similarity=0.207 Sum_probs=86.3
Q ss_pred ccCCCCCcccCHHHHHHHhcCCccccccC--------CCCcee--------EEEeecCCCCccCceeeecC---CCCchh
Q 038019 637 VGIGSKPNIFGYAELRSATKDFNRSNKLG--------EGGYGP--------VYKVTANSYGYLAPEYAMRG---HLTEKA 697 (866)
Q Consensus 637 ~~~~~~~~~~~~~~~~~~~~dF~~~~~lg--------~g~~g~--------vy~~~~gt~gY~aPE~~~~~---~~t~ks 697 (866)
|+...+.|||.+++-..++.|||++..+- .+++.. --.+.+||.-|+|||..... +|+.|+
T Consensus 720 HRDLKP~NIFLd~~~~VKIGDFGLAt~~~~~~~~~d~~~~~~~~~~g~~~~~~Ts~VGTalYvAPEll~~~~~~~Yn~Ki 799 (1351)
T KOG1035|consen 720 HRDLKPRNIFLDSRNSVKIGDFGLATDLKENLESIDQDLSFSTNRAGSNDGDLTSQVGTALYVAPELLSDTSSNKYNSKI 799 (1351)
T ss_pred eccCCcceeEEcCCCCeeecccccchhhhhhhhhHhhccCccccccCCCCcccccccceeeeecHHHhcccccccccchh
Confidence 33334448999999899999999987721 112221 12355899999999988643 699999
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCchhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCH
Q 038019 698 DVFSFGVVALEIISGRASSDKSLDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPM 777 (866)
Q Consensus 698 DVySfGvvLlEl~tg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm 777 (866)
|+||+||||+||+. ||.. .++... +...++.+.+.+- ..+..+++..-.++..+.++.||.+|||+
T Consensus 800 DmYSLGIVlFEM~y---PF~T--sMERa~----iL~~LR~g~iP~~-----~~f~~~~~~~e~slI~~Ll~hdP~kRPtA 865 (1351)
T KOG1035|consen 800 DMYSLGIVLFEMLY---PFGT--SMERAS----ILTNLRKGSIPEP-----ADFFDPEHPEEASLIRWLLSHDPSKRPTA 865 (1351)
T ss_pred hhHHHHHHHHHHhc---cCCc--hHHHHH----HHHhcccCCCCCC-----cccccccchHHHHHHHHHhcCCCccCCCH
Confidence 99999999999984 3432 122211 1222333333221 12233344444556668899999999999
Q ss_pred HHHHH
Q 038019 778 SRVVA 782 (866)
Q Consensus 778 ~~V~~ 782 (866)
.|++.
T Consensus 866 ~eLL~ 870 (1351)
T KOG1035|consen 866 TELLN 870 (1351)
T ss_pred HHHhh
Confidence 98864
|
|
| >KOG0660 consensus Mitogen-activated protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.75 E-value=4.9e-09 Score=109.07 Aligned_cols=146 Identities=16% Similarity=0.167 Sum_probs=89.4
Q ss_pred hhhccCCCCCcccCHHHHHHHhcCCccccccCC---CCceeEEEeecCCCCccCceeee-cCCCCchhHHHHHHHHHHHH
Q 038019 634 EVLVGIGSKPNIFGYAELRSATKDFNRSNKLGE---GGYGPVYKVTANSYGYLAPEYAM-RGHLTEKADVFSFGVVALEI 709 (866)
Q Consensus 634 ~~~~~~~~~~~~~~~~~~~~~~~dF~~~~~lg~---g~~g~vy~~~~gt~gY~aPE~~~-~~~~t~ksDVySfGvvLlEl 709 (866)
.++++.-+..|++..++-..++.|||+++.... .+|= ++-+.|.-|.|||.+. ...||...||||.||++.||
T Consensus 145 nViHRDLKPsNll~n~~c~lKI~DFGLAR~~~~~~~~~~m---TeYVaTRWYRAPElll~~~~Yt~aiDiWSvGCI~AEm 221 (359)
T KOG0660|consen 145 NVIHRDLKPSNLLLNADCDLKICDFGLARYLDKFFEDGFM---TEYVATRWYRAPELLLNSSEYTKAIDIWSVGCILAEM 221 (359)
T ss_pred cccccccchhheeeccCCCEEeccccceeeccccCcccch---hcceeeeeecCHHHHhccccccchhhhhhhhHHHHHH
Confidence 344444444578877777779999999999864 3332 2335688999999775 56899999999999999999
Q ss_pred HhcCCCCCCCchhhhhcHHHHHHHHhhcCCccc--------ccC--CcccccC-----HHHHHHHHHHHHHccCCCCCCC
Q 038019 710 ISGRASSDKSLDMEKIYLLEWAWNLHENNQSFG--------LVD--PTLTEFN-----DKEALRVIGVALLCTQTSPMMR 774 (866)
Q Consensus 710 ~tg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~--------~~d--~~l~~~~-----~~~~~~~~~la~~C~~~~p~~R 774 (866)
++||.-|......++..+...+.....+..+.. .+. |..+..+ +..-...+++.-+.+..||.+|
T Consensus 222 L~gkplFpG~d~v~Ql~lI~~~lGtP~~e~l~~i~s~~ar~yi~slp~~p~~~f~~~fp~a~p~AidLlekmL~fdP~kR 301 (359)
T KOG0660|consen 222 LTGKPLFPGKDYVHQLQLILELLGTPSEEDLQKIRSEKARPYIKSLPQIPKQPFSSIFPNANPLAIDLLEKMLVFDPKKR 301 (359)
T ss_pred HcCCCCCCCCchHHHHHHHHHhcCCCCHHHHHHhccHHHHHHHHhCCCCCCCCHHHHcCCCCHHHHHHHHHHhccCcccc
Confidence 999987765443333333222211111111100 000 1110000 0111223444447889999999
Q ss_pred CCHHHHHH
Q 038019 775 PPMSRVVA 782 (866)
Q Consensus 775 Psm~~V~~ 782 (866)
+|..|.++
T Consensus 302 ita~eAL~ 309 (359)
T KOG0660|consen 302 ITAEEALA 309 (359)
T ss_pred CCHHHHhc
Confidence 99998864
|
|
| >KOG0600 consensus Cdc2-related protein kinase [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.74 E-value=3.4e-09 Score=114.25 Aligned_cols=91 Identities=19% Similarity=0.202 Sum_probs=73.2
Q ss_pred hhccCCCCCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeec-CCCCchhHHHHHHHHHHHHHhcC
Q 038019 635 VLVGIGSKPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMR-GHLTEKADVFSFGVVALEIISGR 713 (866)
Q Consensus 635 ~~~~~~~~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~-~~~t~ksDVySfGvvLlEl~tg~ 713 (866)
.+|+.....|++.+.+...++.|||++++.-..+. .-|...+-|.-|.|||.+.+ ..|+...|+||.||||.||++||
T Consensus 239 vlHRDIK~SNiLidn~G~LKiaDFGLAr~y~~~~~-~~~T~rVvTLWYRpPELLLG~t~Yg~aVDlWS~GCIl~El~~gk 317 (560)
T KOG0600|consen 239 VLHRDIKGSNILIDNNGVLKIADFGLARFYTPSGS-APYTSRVVTLWYRPPELLLGATSYGTAVDLWSVGCILAELFLGK 317 (560)
T ss_pred eeeccccccceEEcCCCCEEeccccceeeccCCCC-cccccceEEeeccChHHhcCCcccccceeehhhhHHHHHHHcCC
Confidence 44555666799999999999999999997654332 23777788999999998874 58999999999999999999999
Q ss_pred CCCCCCchhhhhc
Q 038019 714 ASSDKSLDMEKIY 726 (866)
Q Consensus 714 ~p~~~~~~~~~~~ 726 (866)
+.+......++.+
T Consensus 318 PI~~G~tEveQl~ 330 (560)
T KOG0600|consen 318 PILQGRTEVEQLH 330 (560)
T ss_pred CCcCCccHHHHHH
Confidence 9887655444333
|
|
| >KOG0659 consensus Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, kinase subunit CDK7 [Cell cycle control, cell division, chromosome partitioning; Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.67 E-value=2.3e-08 Score=99.60 Aligned_cols=142 Identities=15% Similarity=0.151 Sum_probs=92.1
Q ss_pred CCCC-cccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeee-cCCCCchhHHHHHHHHHHHHHhcCCCCC
Q 038019 640 GSKP-NIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAM-RGHLTEKADVFSFGVVALEIISGRASSD 717 (866)
Q Consensus 640 ~~~~-~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~-~~~~t~ksDVySfGvvLlEl~tg~~p~~ 717 (866)
+.+| |++..++...|+.|||+++..|.-.....|. +-|.-|.|||.+. ..+|+..+|+||.||++.||+-|++-+.
T Consensus 126 DlKPnNLLis~~g~lKiADFGLAr~f~~p~~~~~~~--V~TRWYRAPELLfGsr~Yg~~VDmWavGCI~AELllr~P~fp 203 (318)
T KOG0659|consen 126 DLKPNNLLISSDGQLKIADFGLARFFGSPNRIQTHQ--VVTRWYRAPELLFGSRQYGTGVDMWAVGCIFAELLLRVPFFP 203 (318)
T ss_pred cCCccceEEcCCCcEEeecccchhccCCCCcccccc--eeeeeccChHHhccchhcCCcchhhhHHHHHHHHHccCCCCC
Confidence 4445 5666678888999999999998766555555 5688999999776 4689999999999999999998876555
Q ss_pred CCchhhhhcHHHHHHHHhhcCCccc------cc------CCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 038019 718 KSLDMEKIYLLEWAWNLHENNQSFG------LV------DPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAM 783 (866)
Q Consensus 718 ~~~~~~~~~l~~~~~~~~~~~~~~~------~~------d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~ 783 (866)
...+-++...+--+.....+....+ .+ -|.+...-..+....+++....+..+|.+|.+.+|++++
T Consensus 204 G~sDidQL~~If~~LGTP~~~~WP~~~~lpdY~~~~~~P~~~~~~lf~aas~d~ldLl~~m~~ynP~~Rita~qaL~~ 281 (318)
T KOG0659|consen 204 GDSDIDQLSKIFRALGTPTPDQWPEMTSLPDYVKIQQFPKPPLNNLFPAASSDALDLLSKMLTYNPKKRITASQALKH 281 (318)
T ss_pred CCchHHHHHHHHHHcCCCCcccCccccccccHHHHhcCCCCccccccccccHHHHHHHHhhhccCchhcccHHHHhcc
Confidence 4433332222211111111111111 00 011111112233445777778899999999999998754
|
|
| >KOG4717 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.66 E-value=2e-08 Score=107.97 Aligned_cols=114 Identities=19% Similarity=0.272 Sum_probs=83.9
Q ss_pred HHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCC-chhHHHHHHHHHHHHHhcCCCCCCCchhhhhcHH
Q 038019 650 ELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLT-EKADVFSFGVVALEIISGRASSDKSLDMEKIYLL 728 (866)
Q Consensus 650 ~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t-~ksDVySfGvvLlEl~tg~~p~~~~~~~~~~~l~ 728 (866)
-...++.|||.++..--|. -....+|+..|-|||.+.+..|. ..+||||+||+||-|++|+.||....+.+...
T Consensus 155 lGlVKLTDFGFSNkf~PG~---kL~TsCGSLAYSAPEILLGDsYDAPAVDiWSLGVILyMLVCGq~PFqeANDSETLT-- 229 (864)
T KOG4717|consen 155 LGLVKLTDFGFSNKFQPGK---KLTTSCGSLAYSAPEILLGDSYDAPAVDIWSLGVILYMLVCGQPPFQEANDSETLT-- 229 (864)
T ss_pred cCceEeeeccccccCCCcc---hhhcccchhhccCchhhhcCccCCcchhhhHHHHHHHHHHhCCCccccccchhhhh--
Confidence 3457889999999886654 23345789999999999988886 57899999999999999999998766544321
Q ss_pred HHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 729 EWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 729 ~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
-++|-.. ..+.--..++-+++..+++.||.+|.+.+||+.
T Consensus 230 -------------mImDCKY-tvPshvS~eCrdLI~sMLvRdPkkRAslEeI~s 269 (864)
T KOG4717|consen 230 -------------MIMDCKY-TVPSHVSKECRDLIQSMLVRDPKKRASLEEIVS 269 (864)
T ss_pred -------------hhhcccc-cCchhhhHHHHHHHHHHHhcCchhhccHHHHhc
Confidence 2333332 112222334555666888999999999999974
|
|
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.2e-08 Score=81.48 Aligned_cols=59 Identities=31% Similarity=0.421 Sum_probs=35.2
Q ss_pred CCCEEEccCCCCCCCCCccccCCCCcCEEeccCCcCCCCCCccccCCCCCCEeeccCCC
Q 038019 90 YLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKELTVLAFGTNN 148 (866)
Q Consensus 90 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 148 (866)
+|++|+|++|+++...+..|.++++|++|+|++|.++...|..|.++++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 45666666666654444556666666666666666655555556666666666666554
|
... |
| >KOG1151 consensus Tousled-like protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.4e-08 Score=107.02 Aligned_cols=131 Identities=24% Similarity=0.333 Sum_probs=86.2
Q ss_pred cCCCCC-cccCH---HHHHHHhcCCccccccCCCCceeEEEe-----ecCCCCccCceeeecC----CCCchhHHHHHHH
Q 038019 638 GIGSKP-NIFGY---AELRSATKDFNRSNKLGEGGYGPVYKV-----TANSYGYLAPEYAMRG----HLTEKADVFSFGV 704 (866)
Q Consensus 638 ~~~~~~-~~~~~---~~~~~~~~dF~~~~~lg~g~~g~vy~~-----~~gt~gY~aPE~~~~~----~~t~ksDVySfGv 704 (866)
+.+.+| ||++. .-...++.|||+++++....++.|-.. .+||+-|++||++.-+ +++.|+||||.||
T Consensus 593 HYDLKPgNILLv~GtacGeIKITDFGLSKIMdddSy~~vdGmeLTSQgAGTYWYLPPEcFvVgkePPKIsnKVDVWSvGV 672 (775)
T KOG1151|consen 593 HYDLKPGNILLVNGTACGEIKITDFGLSKIMDDDSYNSVDGMELTSQGAGTYWYLPPECFVVGKEPPKISNKVDVWSVGV 672 (775)
T ss_pred eeccCCccEEEecCcccceeEeeecchhhhccCCccCcccceeeecccCceeeecCcceeecCCCCCccccceeeEeeeh
Confidence 344444 55432 234567899999999988888766432 2799999999998765 7899999999999
Q ss_pred HHHHHHhcCCCCCCCchhhhhcHHHHHHHHhhcCCcccccCCcc--cccCHHHHHHHHHHHHHccCCCCCCCCCHHHH
Q 038019 705 VALEIISGRASSDKSLDMEKIYLLEWAWNLHENNQSFGLVDPTL--TEFNDKEALRVIGVALLCTQTSPMMRPPMSRV 780 (866)
Q Consensus 705 vLlEl~tg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l--~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V 780 (866)
+++..+.||+||..... ..++. .+..+...-.-.. ......++..+++ +|++..-++|-...++
T Consensus 673 IFyQClYGrKPFGhnqs--QQdIL-------qeNTIlkAtEVqFP~KPvVsseAkaFIR---RCLaYRKeDR~DV~qL 738 (775)
T KOG1151|consen 673 IFYQCLYGRKPFGHNQS--QQDIL-------QENTILKATEVQFPPKPVVSSEAKAFIR---RCLAYRKEDRIDVQQL 738 (775)
T ss_pred hhhhhhccCCCCCCchh--HHHHH-------hhhchhcceeccCCCCCccCHHHHHHHH---HHHHhhhhhhhhHHHH
Confidence 99999999999975432 12222 1222211111111 1122334555554 8999999998765444
|
|
| >KOG0667 consensus Dual-specificity tyrosine-phosphorylation regulated kinase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.5e-08 Score=113.39 Aligned_cols=79 Identities=24% Similarity=0.240 Sum_probs=60.6
Q ss_pred cCCCCC-cccCHH--HHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCC
Q 038019 638 GIGSKP-NIFGYA--ELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRA 714 (866)
Q Consensus 638 ~~~~~~-~~~~~~--~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~ 714 (866)
+.+.+| ||++.+ .-..|+-|||.+...++.-| .-.-+.-|.|||++.+..|+++.|+||||||+.||+||.+
T Consensus 312 HcDLKPENILL~~~~r~~vKVIDFGSSc~~~q~vy-----tYiQSRfYRAPEVILGlpY~~~IDmWSLGCIlAEL~tG~P 386 (586)
T KOG0667|consen 312 HCDLKPENILLKDPKRSRIKVIDFGSSCFESQRVY-----TYIQSRFYRAPEVILGLPYDTAIDMWSLGCILAELFTGEP 386 (586)
T ss_pred eccCChhheeeccCCcCceeEEecccccccCCcce-----eeeeccccccchhhccCCCCCccceeehhhhHHhHhcCcc
Confidence 445555 554433 22567899999999888654 2346788999999999999999999999999999999976
Q ss_pred CCCCCch
Q 038019 715 SSDKSLD 721 (866)
Q Consensus 715 p~~~~~~ 721 (866)
-|.....
T Consensus 387 LfpG~ne 393 (586)
T KOG0667|consen 387 LFPGDNE 393 (586)
T ss_pred ccCCCCH
Confidence 6654443
|
|
| >KOG0671 consensus LAMMER dual specificity kinases [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.64 E-value=6.2e-09 Score=108.74 Aligned_cols=126 Identities=16% Similarity=0.215 Sum_probs=86.2
Q ss_pred HHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCCchhhhhcHHHHH
Q 038019 652 RSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSLDMEKIYLLEWA 731 (866)
Q Consensus 652 ~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~~~~~~l~~~~ 731 (866)
..++-|||.+...-+... .++.|..|.|||++.+-..+..+||||+||+|.|+.||..-|......+...+.+.+
T Consensus 250 ~I~vIDFGsAtf~~e~hs-----~iVsTRHYRAPEViLgLGwS~pCDvWSiGCIL~ElytG~~LFqtHen~EHLaMMerI 324 (415)
T KOG0671|consen 250 AIKVIDFGSATFDHEHHS-----TIVSTRHYRAPEVILGLGWSQPCDVWSIGCILVELYTGETLFQTHENLEHLAMMERI 324 (415)
T ss_pred ceEEEecCCcceeccCcc-----eeeeccccCCchheeccCcCCccCceeeeeEEEEeeccceecccCCcHHHHHHHHHh
Confidence 345678888877766543 235788999999999999999999999999999999999877654433333333332
Q ss_pred HH--------------HhhcCCc-----------ccccCCcc-----cccCHHHHHHHHHHHHHccCCCCCCCCCHHHHH
Q 038019 732 WN--------------LHENNQS-----------FGLVDPTL-----TEFNDKEALRVIGVALLCTQTSPMMRPPMSRVV 781 (866)
Q Consensus 732 ~~--------------~~~~~~~-----------~~~~d~~l-----~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~ 781 (866)
.. ....+++ ..+.++.. ....+.+..+++++....+..||.+|+|.+|++
T Consensus 325 lGp~P~~mi~r~~~~Kyf~~~rldw~e~~~~~~~k~v~~~ckpl~~~~~~~d~e~~~LfDLl~~mL~fDP~~RiTl~EAL 404 (415)
T KOG0671|consen 325 LGPIPSRMIKKTRKEKYFRRGRLDWPEVSSKGKSKYVFEPCKPLKKYMLQDDLEHVQLFDLLRRMLEFDPARRITLREAL 404 (415)
T ss_pred hCCCcHHHhhhhhhHhhhhcccccCccccccccchhhhcCCccHHHHhccCcHHHhHHHHHHHHHHccCccccccHHHHh
Confidence 11 1111111 11222211 122345677889999999999999999999986
Q ss_pred H
Q 038019 782 A 782 (866)
Q Consensus 782 ~ 782 (866)
.
T Consensus 405 ~ 405 (415)
T KOG0671|consen 405 S 405 (415)
T ss_pred c
Confidence 4
|
|
| >KOG0984 consensus Mitogen-activated protein kinase (MAPK) kinase MKK3/MKK6 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.62 E-value=7.7e-09 Score=99.10 Aligned_cols=83 Identities=24% Similarity=0.224 Sum_probs=66.3
Q ss_pred hhhccCCCCCcccCHHHHHHHhcCCccccccCCCCceeEEEe-ecCCCCccCceeee----cCCCCchhHHHHHHHHHHH
Q 038019 634 EVLVGIGSKPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKV-TANSYGYLAPEYAM----RGHLTEKADVFSFGVVALE 708 (866)
Q Consensus 634 ~~~~~~~~~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~-~~gt~gY~aPE~~~----~~~~t~ksDVySfGvvLlE 708 (866)
..+|+.....|++...+.+.++.|||++-.+-. .+.+. .+|.-.|||||.+. ...|+-|+||||+||.+.|
T Consensus 169 ~vIHRDvKPsNiLIn~~GqVKiCDFGIsG~L~d----SiAkt~daGCkpYmaPEri~~e~n~~gY~vksDvWSLGItmiE 244 (282)
T KOG0984|consen 169 SVIHRDVKPSNILINYDGQVKICDFGISGYLVD----SIAKTMDAGCKPYMAPERINPELNQKGYSVKSDVWSLGITMIE 244 (282)
T ss_pred hhhhccCCcceEEEccCCcEEEcccccceeehh----hhHHHHhcCCCccCChhhcCcccCcccceeehhhhhhhhhhhh
Confidence 345555666699999999999999999876643 23333 46788999999875 3479999999999999999
Q ss_pred HHhcCCCCCCCc
Q 038019 709 IISGRASSDKSL 720 (866)
Q Consensus 709 l~tg~~p~~~~~ 720 (866)
|.++|.|++...
T Consensus 245 lA~lr~PY~~w~ 256 (282)
T KOG0984|consen 245 MAILRFPYESWG 256 (282)
T ss_pred hhhccccccccC
Confidence 999999998543
|
|
| >KOG0594 consensus Protein kinase PCTAIRE and related kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.7e-08 Score=105.43 Aligned_cols=136 Identities=16% Similarity=0.171 Sum_probs=92.0
Q ss_pred CcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecC-CCCchhHHHHHHHHHHHHHhcCCCCCCCch
Q 038019 643 PNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRG-HLTEKADVFSFGVVALEIISGRASSDKSLD 721 (866)
Q Consensus 643 ~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~-~~t~ksDVySfGvvLlEl~tg~~p~~~~~~ 721 (866)
-|++..++...++.|||+++..+-.. ..|...++|.-|.|||.+.+. .|+...|+||+||++.||++++.-|.....
T Consensus 149 QNlLi~~~G~lKlaDFGlAra~~ip~--~~yt~evvTlWYRaPEvLlGs~~Ys~~vDiWs~GcIfaEm~~~~~LFpG~se 226 (323)
T KOG0594|consen 149 QNLLISSSGVLKLADFGLARAFSIPM--RTYTPEVVTLWYRAPEVLLGSTSYSTSVDIWSLGCIFAEMFTRRPLFPGDSE 226 (323)
T ss_pred ceEEECCCCcEeeeccchHHHhcCCc--ccccccEEEeeccCHHHhcCCCcCCCCcchHhHHHHHHHHHhCCCCCCCCcH
Confidence 36777777788999999999776432 447777889999999998765 899999999999999999999887776544
Q ss_pred hhhhcHHHHHHHHh---hcCCccccc---CCc--cccc------CH---HHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 038019 722 MEKIYLLEWAWNLH---ENNQSFGLV---DPT--LTEF------ND---KEALRVIGVALLCTQTSPMMRPPMSRVVAM 783 (866)
Q Consensus 722 ~~~~~l~~~~~~~~---~~~~~~~~~---d~~--l~~~------~~---~~~~~~~~la~~C~~~~p~~RPsm~~V~~~ 783 (866)
.+ ....+.+.+ .+.....+. |-. .... .. .......++...|++.+|+.|.+.+.++.+
T Consensus 227 ~~---ql~~If~~lGtP~e~~Wp~v~~~~~~k~~f~~~~~~~~l~~~~~~~~~~~~dll~~~L~y~p~~R~Sa~~al~h 302 (323)
T KOG0594|consen 227 ID---QLFRIFRLLGTPNEKDWPGVSSLPDYKAPFPKWPGPKDLSSILPKLDPDGIELLSKLLQYDPAKRISAKGALTH 302 (323)
T ss_pred HH---HHHHHHHHcCCCCccCCCCccccccccccCcCCCCccchHHhccccCccHHHHHHHHhccCcccCcCHHHHhcC
Confidence 22 222222222 111111111 111 1000 00 111356778889999999999999988764
|
|
| >KOG0690 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.6e-08 Score=102.82 Aligned_cols=75 Identities=24% Similarity=0.278 Sum_probs=65.3
Q ss_pred cccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCCc
Q 038019 644 NIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSL 720 (866)
Q Consensus 644 ~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~ 720 (866)
|.+++.|...++.|||+.+.= =.+|...+..+||+-|+|||++....|...+|.|..|||++||++||-||....
T Consensus 298 NLlLDkDGHIKitDFGLCKE~--I~~g~t~kTFCGTPEYLAPEVleDnDYgraVDWWG~GVVMYEMmCGRLPFyn~d 372 (516)
T KOG0690|consen 298 NLLLDKDGHIKITDFGLCKEE--IKYGDTTKTFCGTPEYLAPEVLEDNDYGRAVDWWGVGVVMYEMMCGRLPFYNKD 372 (516)
T ss_pred hheeccCCceEeeecccchhc--ccccceeccccCChhhcCchhhccccccceeehhhhhHHHHHHHhccCcccccc
Confidence 667888888999999987642 246677888899999999999999999999999999999999999999997543
|
|
| >KOG0585 consensus Ca2+/calmodulin-dependent protein kinase kinase beta and related serine/threonine protein kinases [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.5e-08 Score=108.49 Aligned_cols=135 Identities=16% Similarity=0.190 Sum_probs=92.3
Q ss_pred hhccCCCCCcccCHHHHHHHhcCCccccccCCCC---ceeEEEeecCCCCccCceeeecCC----CCchhHHHHHHHHHH
Q 038019 635 VLVGIGSKPNIFGYAELRSATKDFNRSNKLGEGG---YGPVYKVTANSYGYLAPEYAMRGH----LTEKADVFSFGVVAL 707 (866)
Q Consensus 635 ~~~~~~~~~~~~~~~~~~~~~~dF~~~~~lg~g~---~g~vy~~~~gt~gY~aPE~~~~~~----~t~ksDVySfGvvLl 707 (866)
++|+.....|++..++...|+.|||.+..-.+|. +-.-....+||+.+||||...++. ...+.||||.||.||
T Consensus 231 iiHRDIKPsNLLl~~~g~VKIsDFGVs~~~~~~~~~~~d~~L~~tvGTPAF~APE~c~~~~~~~~~g~a~DiWalGVTLY 310 (576)
T KOG0585|consen 231 IIHRDIKPSNLLLSSDGTVKISDFGVSNEFPQGSDEGSDDQLSRTVGTPAFFAPELCSGGNSFSYSGFALDIWALGVTLY 310 (576)
T ss_pred eeccccchhheEEcCCCcEEeeccceeeecccCCccccHHHHhhcCCCccccchHhhcCCCCccccchhhhhhhhhhhHH
Confidence 4445555568888888999999999998775441 111123368999999999888743 357889999999999
Q ss_pred HHHhcCCCCCCCchhhhhcHHHHHHHHhhcCCcccccCCcc--cccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHh
Q 038019 708 EIISGRASSDKSLDMEKIYLLEWAWNLHENNQSFGLVDPTL--TEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLA 785 (866)
Q Consensus 708 El~tg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l--~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~ 785 (866)
-++-|+-||..... ..+.+ +++...+ ++.+ +.-.+.-+|..+.+++||++|-+..+|....-
T Consensus 311 CllfG~~PF~~~~~---~~l~~------------KIvn~pL~fP~~p-e~~e~~kDli~~lL~KdP~~Ri~l~~ik~Hpw 374 (576)
T KOG0585|consen 311 CLLFGQLPFFDDFE---LELFD------------KIVNDPLEFPENP-EINEDLKDLIKRLLEKDPEQRITLPDIKLHPW 374 (576)
T ss_pred HhhhccCCcccchH---HHHHH------------HHhcCcccCCCcc-cccHHHHHHHHHHhhcChhheeehhhheecce
Confidence 99999999975332 22222 1222222 1221 22333444556778899999999999876553
|
|
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
Probab=98.58 E-value=2.3e-08 Score=79.77 Aligned_cols=61 Identities=26% Similarity=0.400 Sum_probs=40.6
Q ss_pred CCcCEEeccCCcCCCCCCccccCCCCCCEeeccCCCCCCCCchhhcCCCCccEEEeecCCC
Q 038019 113 SRLMFLSFSHNDFSGPVPRELGNLKELTVLAFGTNNFSGALPPELGNLAKLEQLYIDSCGA 173 (866)
Q Consensus 113 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l 173 (866)
++|++|+|++|+|+...+..|.++++|++|++++|.++...+..|.++++|++|++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4567777777777655556667777777777777777655556666666666666666653
|
... |
| >KOG1989 consensus ARK protein kinase family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.4e-07 Score=109.06 Aligned_cols=133 Identities=15% Similarity=0.114 Sum_probs=87.5
Q ss_pred hccCCCCCcccCHHHHHHHhcCCccccccCCCC---ceeEEE----eecCCCCccCceeee---cCCCCchhHHHHHHHH
Q 038019 636 LVGIGSKPNIFGYAELRSATKDFNRSNKLGEGG---YGPVYK----VTANSYGYLAPEYAM---RGHLTEKADVFSFGVV 705 (866)
Q Consensus 636 ~~~~~~~~~~~~~~~~~~~~~dF~~~~~lg~g~---~g~vy~----~~~gt~gY~aPE~~~---~~~~t~ksDVySfGvv 705 (866)
+|++.+--|++...+..-+++|||.+--.-..- .+.-|- -.--|+-|.|||.+. +..+++|+|||++||+
T Consensus 168 IHRDLKiENvLls~~g~~KLCDFGSatt~~~~~~~~~e~~~ve~eI~k~TTp~YRsPEMIDlysg~pI~eKsDIWALGcl 247 (738)
T KOG1989|consen 168 IHRDLKIENVLLSADGNYKLCDFGSATTKILSPTSAQEVNYVEEEIEKYTTPQYRSPEMIDLYSGLPIGEKSDIWALGCL 247 (738)
T ss_pred chhhhhhhheEEcCCCCEEeCcccccccccCCCccHHHHHHHHHHHHhhCCccccChHHHhhhcCCCCcchhHHHHHHHH
Confidence 333333346666666677889998653221110 000000 013588999999764 5689999999999999
Q ss_pred HHHHHhcCCCCCCCchhhhhcHHHHHHHHhhcCCcccccCCcc--cccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 038019 706 ALEIISGRASSDKSLDMEKIYLLEWAWNLHENNQSFGLVDPTL--TEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAM 783 (866)
Q Consensus 706 LlEl~tg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l--~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~ 783 (866)
||-|+....||+.... ..|++... +.. +....++..|+..|++++|++||.+-+|+..
T Consensus 248 LYkLCy~t~PFe~sg~-------------------laIlng~Y~~P~~-p~ys~~l~~LI~~mL~~nP~~RPnI~Qv~~~ 307 (738)
T KOG1989|consen 248 LYKLCYFTTPFEESGK-------------------LAILNGNYSFPPF-PNYSDRLKDLIRTMLQPNPDERPNIYQVLEE 307 (738)
T ss_pred HHHHHHhCCCcCcCcc-------------------eeEEeccccCCCC-ccHHHHHHHHHHHHhccCcccCCCHHHHHHH
Confidence 9999999999985321 12333333 111 2344556667779999999999999999887
Q ss_pred HhcCc
Q 038019 784 LAGDI 788 (866)
Q Consensus 784 L~~~~ 788 (866)
+-...
T Consensus 308 ~~~l~ 312 (738)
T KOG1989|consen 308 IFELA 312 (738)
T ss_pred HHHHh
Confidence 76543
|
|
| >KOG0663 consensus Protein kinase PITSLRE and related kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.52 E-value=1.6e-07 Score=96.48 Aligned_cols=153 Identities=14% Similarity=0.168 Sum_probs=97.2
Q ss_pred CCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeee-cCCCCchhHHHHHHHHHHHHHhcCCCCCCCc
Q 038019 642 KPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAM-RGHLTEKADVFSFGVVALEIISGRASSDKSL 720 (866)
Q Consensus 642 ~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~-~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~ 720 (866)
..|++.......+++|||+++..|.- -.-|.-.+-|.-|.|||.+. ...|++..|+||+|||+.|++++++-+....
T Consensus 205 ~SNLLm~~~G~lKiaDFGLAR~ygsp--~k~~T~lVVTLWYRaPELLLG~~tyst~iDMWSvGCI~aE~l~~kPlf~G~s 282 (419)
T KOG0663|consen 205 TSNLLLSHKGILKIADFGLAREYGSP--LKPYTPLVVTLWYRAPELLLGAKTYSTAVDMWSVGCIFAELLTQKPLFPGKS 282 (419)
T ss_pred hhheeeccCCcEEecccchhhhhcCC--cccCcceEEEeeecCHHHhcCCcccCcchhhhhHHHHHHHHHhcCCCCCCCc
Confidence 34677777788899999999988764 23466677899999999877 4679999999999999999999998776544
Q ss_pred hhhhhcHHHHHHHHhhcCCcccccCCcc-----------cccCHHH----------HHHHHHHHHHccCCCCCCCCCHHH
Q 038019 721 DMEKIYLLEWAWNLHENNQSFGLVDPTL-----------TEFNDKE----------ALRVIGVALLCTQTSPMMRPPMSR 779 (866)
Q Consensus 721 ~~~~~~l~~~~~~~~~~~~~~~~~d~~l-----------~~~~~~~----------~~~~~~la~~C~~~~p~~RPsm~~ 779 (866)
..++ .+.+...+ |.-.+.+.|.+ ...+... ...-+++...-+..||++|-|+.|
T Consensus 283 E~dQ---l~~If~ll--GtPte~iwpg~~~lp~~k~~~f~~~pyn~lr~kF~~~~lse~g~~Lln~llt~dP~kR~tA~~ 357 (419)
T KOG0663|consen 283 EIDQ---LDKIFKLL--GTPSEAIWPGYSELPAVKKMTFSEHPYNNLRKKFGALSLSEQGFDLLNKLLTYDPGKRITAED 357 (419)
T ss_pred hHHH---HHHHHHHh--CCCccccCCCccccchhhccccCCCCchhhhhhccccccchhHHHHHHHHhccCccccccHHH
Confidence 3332 33332222 11112222211 0011000 122334444556789999999998
Q ss_pred HHHHHhcCcCCCCccCCCcccccC
Q 038019 780 VVAMLAGDIEVGTVVSKPSYLTGW 803 (866)
Q Consensus 780 V~~~L~~~~~~~~~~~~p~~~~~~ 803 (866)
.++. +.....+.|..|.+++.+
T Consensus 358 ~L~h--~~F~e~P~p~~P~~~Pt~ 379 (419)
T KOG0663|consen 358 GLKH--EYFRETPLPIDPSMFPTW 379 (419)
T ss_pred hhcc--cccccCCCCCChhhcCCC
Confidence 7642 233444556666665544
|
|
| >KOG0658 consensus Glycogen synthase kinase-3 [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.51 E-value=3.5e-08 Score=103.06 Aligned_cols=134 Identities=20% Similarity=0.200 Sum_probs=92.2
Q ss_pred cccCHHH-HHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeec-CCCCchhHHHHHHHHHHHHHhcCCCCCCCch
Q 038019 644 NIFGYAE-LRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMR-GHLTEKADVFSFGVVALEIISGRASSDKSLD 721 (866)
Q Consensus 644 ~~~~~~~-~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~-~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~ 721 (866)
|++.+.+ ...|+.|||.++.+-.|.--..|.. |.-|.|||.+.+ ..||.+.||||-|||+.||+-|++-|.....
T Consensus 155 NlLvD~~tg~LKicDFGSAK~L~~~epniSYic---SRyYRaPELifga~~Yt~~IDiWSaGCV~aELl~g~plFpG~s~ 231 (364)
T KOG0658|consen 155 NLLVDPDTGVLKICDFGSAKVLVKGEPNISYIC---SRYYRAPELIFGATEYTTSIDIWSAGCVMAELLKGQPLFPGDSS 231 (364)
T ss_pred eEEEcCCCCeEEeccCCcceeeccCCCceeEEE---eccccCHHHHcCccccCceeEEhhhhHHHHHHhcCCcccCCCCH
Confidence 5655544 6788999999999998887777775 578999998764 6899999999999999999999988876544
Q ss_pred hhhhcHHHHHH--HHhhcC-------CcccccCCcccc------cCHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 722 MEKIYLLEWAW--NLHENN-------QSFGLVDPTLTE------FNDKEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 722 ~~~~~l~~~~~--~~~~~~-------~~~~~~d~~l~~------~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
.++ +++-+. ....+. ...+.-.|.+.. .......+.+++..++++.+|.+|.+..|+++
T Consensus 232 ~dQ--L~eIik~lG~Pt~e~I~~mn~~y~~~~~p~ik~~~~~~~~~~~~~~d~~dll~~~L~Y~P~~R~~~~~~l~ 305 (364)
T KOG0658|consen 232 VDQ--LVEIIKVLGTPTREDIKSMNPNYTEFKFPQIKAHPWHKVFFKRLPPDALDLLSKLLQYSPSKRLSALEALA 305 (364)
T ss_pred HHH--HHHHHHHhCCCCHHHHhhcCcccccccCcccccccceeecccCCCHHHHHHHHHHhccChhhcCCHHHHhc
Confidence 332 332221 111111 111222333311 11223345677777999999999999888764
|
|
| >KOG0611 consensus Predicted serine/threonine protein kinase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.49 E-value=5.5e-08 Score=101.74 Aligned_cols=121 Identities=17% Similarity=0.190 Sum_probs=88.6
Q ss_pred cccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCC-chhHHHHHHHHHHHHHhcCCCCCCCchh
Q 038019 644 NIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLT-EKADVFSFGVVALEIISGRASSDKSLDM 722 (866)
Q Consensus 644 ~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t-~ksDVySfGvvLlEl~tg~~p~~~~~~~ 722 (866)
||++++.-..++.|||++++..++.|= ...+|++-|..||.+.+..|. ..+|-||+||+||-|+.|..|||....
T Consensus 183 NILLD~N~NiKIADFGLSNly~~~kfL---qTFCGSPLYASPEIvNG~PY~GPEVDsWsLGvLLYtLVyGtMPFDG~Dh- 258 (668)
T KOG0611|consen 183 NILLDQNNNIKIADFGLSNLYADKKFL---QTFCGSPLYASPEIVNGTPYKGPEVDSWSLGVLLYTLVYGTMPFDGRDH- 258 (668)
T ss_pred heeecCCCCeeeeccchhhhhccccHH---HHhcCCcccCCccccCCCCCCCCccchhhHHHHHHHHhhcccccCCchH-
Confidence 778888888899999999999888764 345789999999999887775 789999999999999999999986322
Q ss_pred hhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHH
Q 038019 723 EKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAML 784 (866)
Q Consensus 723 ~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L 784 (866)
..++. + +..|... .|.- ......++.|.+..+|++|.|+.+|...-
T Consensus 259 --k~lvr---Q-Is~GaYr---EP~~-------PSdA~gLIRwmLmVNP~RRATieDiAsHW 304 (668)
T KOG0611|consen 259 --KRLVR---Q-ISRGAYR---EPET-------PSDASGLIRWMLMVNPERRATIEDIASHW 304 (668)
T ss_pred --HHHHH---H-hhccccc---CCCC-------CchHHHHHHHHHhcCcccchhHHHHhhhh
Confidence 22332 2 2233222 2211 11122344578889999999999998644
|
|
| >KOG1027 consensus Serine/threonine protein kinase and endoribonuclease ERN1/IRE1, sensor of the unfolded protein response pathway [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.46 E-value=2.3e-08 Score=114.01 Aligned_cols=117 Identities=26% Similarity=0.381 Sum_probs=81.7
Q ss_pred HHHHHHhcCCccccccCCCC--ceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhc-CCCCCCCchhhhh
Q 038019 649 AELRSATKDFNRSNKLGEGG--YGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISG-RASSDKSLDMEKI 725 (866)
Q Consensus 649 ~~~~~~~~dF~~~~~lg~g~--~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg-~~p~~~~~~~~~~ 725 (866)
..+++++.|||+++.++.|. |.. .-+..||.||+|||.+...+-+..+|+||+|||++.++|| +.||......+ .
T Consensus 646 ~~~ra~iSDfglsKkl~~~~sS~~r-~s~~sGt~GW~APE~L~~~~~~~avDiFslGCvfyYvltgG~HpFGd~~~R~-~ 723 (903)
T KOG1027|consen 646 GTLRAKISDFGLSKKLAGGKSSFSR-LSGGSGTSGWQAPEQLREDRKTQAVDIFSLGCVFYYVLTGGSHPFGDSLERQ-A 723 (903)
T ss_pred cceeEEecccccccccCCCcchhhc-ccCCCCcccccCHHHHhccccCcccchhhcCceEEEEecCCccCCCchHHhh-h
Confidence 34778899999999997664 333 3466899999999999998889999999999999999986 88987543221 1
Q ss_pred cHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHH
Q 038019 726 YLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVV 781 (866)
Q Consensus 726 ~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~ 781 (866)
+++.- ...+. .+......+ ..+++-..+..+|..||++.+|+
T Consensus 724 NIl~~------~~~L~-----~L~~~~d~e---A~dLI~~ml~~dP~~RPsa~~VL 765 (903)
T KOG1027|consen 724 NILTG------NYTLV-----HLEPLPDCE---AKDLISRMLNPDPQLRPSATDVL 765 (903)
T ss_pred hhhcC------cccee-----eeccCchHH---HHHHHHHhcCCCcccCCCHHHHh
Confidence 22110 00000 011111223 34455588999999999999997
|
|
| >KOG0587 consensus Traf2- and Nck-interacting kinase and related germinal center kinase (GCK) family protein kinases [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.43 E-value=1.3e-07 Score=108.37 Aligned_cols=129 Identities=17% Similarity=0.183 Sum_probs=91.8
Q ss_pred hccCCCCCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeec-----CCCCchhHHHHHHHHHHHHH
Q 038019 636 LVGIGSKPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMR-----GHLTEKADVFSFGVVALEII 710 (866)
Q Consensus 636 ~~~~~~~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~-----~~~t~ksDVySfGvvLlEl~ 710 (866)
++.....-|+++.++...++-|||.+.-+..+- |.-. ...||+.|||||++.. ..|+.++||||+||.-.||.
T Consensus 145 iHRDikG~NiLLT~e~~VKLvDFGvSaQldsT~-grRn-T~iGtP~WMAPEViac~e~~d~tyd~R~D~WsLGITaIEla 222 (953)
T KOG0587|consen 145 IHRDIKGQNVLLTENAEVKLVDFGVSAQLDSTV-GRRN-TFIGTPYWMAPEVIACDESPDATYDYRSDLWSLGITAIEMA 222 (953)
T ss_pred eeecccCceEEEeccCcEEEeeeeeeeeeeccc-cccc-CcCCCcccccceeeecccCCCCCcccccchhhccceeehhc
Confidence 344455568999999999999999988774321 1100 1269999999999863 46788999999999999999
Q ss_pred hcCCCCCCCchhhhhcHHHHHHHHhhcCCccccc-CCccc-ccCHHHHHHHHHHHHHccCCCCCCCCCHHHHH
Q 038019 711 SGRASSDKSLDMEKIYLLEWAWNLHENNQSFGLV-DPTLT-EFNDKEALRVIGVALLCTQTSPMMRPPMSRVV 781 (866)
Q Consensus 711 tg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-d~~l~-~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~ 781 (866)
-|.+|.-.+-+... +..+. .|... .-+.....++.+.+..|+..|-++||+|.+.+
T Consensus 223 dG~PPl~DmHPmra---------------LF~IpRNPPPkLkrp~kWs~~FndFIs~cL~Kd~e~RP~~~~ll 280 (953)
T KOG0587|consen 223 EGAPPLCDMHPMRA---------------LFLIPRNPPPKLKRPKKWSKKFNDFISTCLVKDYEQRPSTEELL 280 (953)
T ss_pred CCCCCccCcchhhh---------------hccCCCCCCccccchhhHHHHHHHHHHHHHhhccccCcchhhhc
Confidence 99999765433221 11111 12221 22455667788888899999999999988765
|
|
| >KOG1023 consensus Natriuretic peptide receptor, guanylate cyclase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.41 E-value=8.8e-08 Score=106.77 Aligned_cols=140 Identities=19% Similarity=0.203 Sum_probs=90.5
Q ss_pred cccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecC-------CCCchhHHHHHHHHHHHHHhcCCCC
Q 038019 644 NIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRG-------HLTEKADVFSFGVVALEIISGRASS 716 (866)
Q Consensus 644 ~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~-------~~t~ksDVySfGvvLlEl~tg~~p~ 716 (866)
+.+.+..+..++.|||+.....+-..-..+....-..-|.|||.++.. ..+.+.|||||||++.|+++.+.|+
T Consensus 79 nClvd~~w~lklt~~Gl~~~~~~~~~~~~~~~~~~~~lw~aPellr~~~~~~~~~~~~~~gdiYs~~ii~~ei~~r~~~~ 158 (484)
T KOG1023|consen 79 NCLVDSRWVLKLTDFGLNSLLEETAEPEAHHPIRKALLWTAPELLRGALSQSLESALTQKGDIYSFGIIMYEILFRSGPF 158 (484)
T ss_pred cceeeeeEEEEechhhhcccccccccccccchhHHHHhccCHHHhcccccccccccccccCCeehHHHHHHHHHhccCcc
Confidence 445566667788899888776430000111111233569999988753 2578899999999999999999999
Q ss_pred CCCchhhh-hcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhcCcC
Q 038019 717 DKSLDMEK-IYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLAGDIE 789 (866)
Q Consensus 717 ~~~~~~~~-~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~~~~~ 789 (866)
+....... ..++.++.. .....+.|.+.... +....++.++..||.++|++||++.+|-..++....
T Consensus 159 ~~~~~~~~~~eii~~~~~-----~~~~~~rP~i~~~~-e~~~~l~~l~~~cw~e~P~~rPs~~~i~~~~~~~~~ 226 (484)
T KOG1023|consen 159 DLRNLVEDPDEIILRVKK-----GGSNPFRPSIELLN-ELPPELLLLVARCWEEIPEKRPSIEQIRSKLLTINK 226 (484)
T ss_pred ccccccCChHHHHHHHHh-----cCCCCcCcchhhhh-hcchHHHHHHHHhcccChhhCccHHHHHhhhhhhcc
Confidence 86432211 223433332 12334555553222 223357778889999999999999999888875443
|
|
| >KOG0695 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.9e-07 Score=95.35 Aligned_cols=73 Identities=25% Similarity=0.373 Sum_probs=62.6
Q ss_pred CcccCHHHHHHHhcCCccccc-cCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCC
Q 038019 643 PNIFGYAELRSATKDFNRSNK-LGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDK 718 (866)
Q Consensus 643 ~~~~~~~~~~~~~~dF~~~~~-lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~ 718 (866)
-|++.+++...++.|+|..+. |+.|. ......||+.|+|||.+++..|...+|.|++||+++||+.||.||+-
T Consensus 380 dnvlldaeghikltdygmcke~l~~gd---~tstfcgtpnyiapeilrgeeygfsvdwwalgvlmfemmagrspfdi 453 (593)
T KOG0695|consen 380 DNVLLDAEGHIKLTDYGMCKEGLGPGD---TTSTFCGTPNYIAPEILRGEEYGFSVDWWALGVLMFEMMAGRSPFDI 453 (593)
T ss_pred cceEEccCCceeecccchhhcCCCCCc---ccccccCCCcccchhhhcccccCceehHHHHHHHHHHHHcCCCCcce
Confidence 478888999999999998754 44443 34456799999999999999999999999999999999999999984
|
|
| >KOG0608 consensus Warts/lats-like serine threonine kinases [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.33 E-value=4.8e-07 Score=99.89 Aligned_cols=91 Identities=23% Similarity=0.276 Sum_probs=66.1
Q ss_pred CCCCcccCHHHHHHHhcCCcccccc---------CCCCceeEE------------E-------------------eecCC
Q 038019 640 GSKPNIFGYAELRSATKDFNRSNKL---------GEGGYGPVY------------K-------------------VTANS 679 (866)
Q Consensus 640 ~~~~~~~~~~~~~~~~~dF~~~~~l---------g~g~~g~vy------------~-------------------~~~gt 679 (866)
...-||+.+.+...++.|||+.-=+ +.|....+- + ..+||
T Consensus 755 iKPDNILIDrdGHIKLTDFGLCTGfRWTHdskYYq~gdH~RqDSmep~~e~~d~~~~lkvL~~ra~~~h~r~~ahslvgt 834 (1034)
T KOG0608|consen 755 IKPDNILIDRDGHIKLTDFGLCTGFRWTHDSKYYQEGDHHRQDSMEPSPEWADISKCLKVLERRAMRQHQRILAHSLVGT 834 (1034)
T ss_pred cCccceEEccCCceeeeeccccccceeccccccccCCCccccccCCCchhhccccccchHHHHHHHhhhhhhhhhhhcCC
Confidence 3344889999999999999876321 111110000 0 01799
Q ss_pred CCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCCchhhh-hcHHHH
Q 038019 680 YGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSLDMEK-IYLLEW 730 (866)
Q Consensus 680 ~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~~~~-~~l~~~ 730 (866)
..|||||++....++.-+|.||.||||+||+-|+.||....+.+. ..+..|
T Consensus 835 ~nyiapevl~r~g~~q~cdwws~gvil~em~~g~~pf~~~tp~~tq~kv~nw 886 (1034)
T KOG0608|consen 835 PNYIAPEVLARTGYTQLCDWWSVGVILYEMLVGQPPFLADTPGETQYKVINW 886 (1034)
T ss_pred CcccChHHhcccCccccchhhHhhHHHHHHhhCCCCccCCCCCcceeeeeeh
Confidence 999999999999999999999999999999999999987665443 233444
|
|
| >KOG0610 consensus Putative serine/threonine protein kinase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.30 E-value=8.2e-07 Score=94.07 Aligned_cols=90 Identities=19% Similarity=0.197 Sum_probs=62.6
Q ss_pred ecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCCchhhhhcHHHHHHHHhhcCCccccc--CCcccccCH
Q 038019 676 TANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSLDMEKIYLLEWAWNLHENNQSFGLV--DPTLTEFND 753 (866)
Q Consensus 676 ~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--d~~l~~~~~ 753 (866)
.+||--|+|||++.+...+..+|.|+|||+||||+.|+-||......+. +. .++ ++...+.+
T Consensus 295 FVGThEYlAPEvI~G~GHgsAVDWWtfGIflYEmLyG~TPFKG~~~~~T--l~-------------NIv~~~l~Fp~~~- 358 (459)
T KOG0610|consen 295 FVGTHEYLAPEVIRGEGHGSAVDWWTFGIFLYEMLYGTTPFKGSNNKET--LR-------------NIVGQPLKFPEEP- 358 (459)
T ss_pred cccccccccceeeecCCCCchhhHHHHHHHHHHHHhCCCCcCCCCchhh--HH-------------HHhcCCCcCCCCC-
Confidence 3799999999999999999999999999999999999999986554321 21 111 12222222
Q ss_pred HHHHHHHHHHHHccCCCCCCCCC----HHHHH
Q 038019 754 KEALRVIGVALLCTQTSPMMRPP----MSRVV 781 (866)
Q Consensus 754 ~~~~~~~~la~~C~~~~p~~RPs----m~~V~ 781 (866)
.....+-+++..-+.+||.+|-. +.||-
T Consensus 359 ~vs~~akDLIr~LLvKdP~kRlg~~rGA~eIK 390 (459)
T KOG0610|consen 359 EVSSAAKDLIRKLLVKDPSKRLGSKRGAAEIK 390 (459)
T ss_pred cchhHHHHHHHHHhccChhhhhccccchHHhh
Confidence 11222333444667899999987 55553
|
|
| >COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.29 E-value=8.8e-08 Score=95.54 Aligned_cols=211 Identities=19% Similarity=0.221 Sum_probs=114.6
Q ss_pred cCCCCCCCEEEccCCCCCCC----CCccccCCCCcCEEeccCCcC---CCCCC-------ccccCCCCCCEeeccCCCCC
Q 038019 85 LVTLQYLTVLKIDQNFFTGP----LPSFIGNLSRLMFLSFSHNDF---SGPVP-------RELGNLKELTVLAFGTNNFS 150 (866)
Q Consensus 85 l~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~Ls~N~l---~~~~p-------~~l~~l~~L~~L~Ls~N~l~ 150 (866)
+..+..+..+|||+|.|... +...+.+-.+|+..+++.-.. ...++ .++-.|++|+..+||+|.+.
T Consensus 26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg 105 (388)
T COG5238 26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFG 105 (388)
T ss_pred HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccC
Confidence 34456666777777766533 222344455666666664321 11222 23456777777777777776
Q ss_pred CCCchhh----cCCCCccEEEeecCCCCCCC----hhhh---------hcCcCCCEEEecCCCCCCCCc----ccccCCC
Q 038019 151 GALPPEL----GNLAKLEQLYIDSCGAGGEI----PSTF---------AKLRNMQTLWASDNPFTGKIP----DFIGNWT 209 (866)
Q Consensus 151 ~~~p~~l----~~l~~L~~L~L~~n~l~~~~----p~~~---------~~l~~L~~L~L~~N~l~~~~p----~~l~~l~ 209 (866)
...|+.+ +.-+.|.+|.|++|++...- ..++ .+-+.|+.+....|++..-.. ..+..-.
T Consensus 106 ~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~ 185 (388)
T COG5238 106 SEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHE 185 (388)
T ss_pred cccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhc
Confidence 6655544 44577888888887764322 2222 123567777777777652211 1122223
Q ss_pred CCCeEEccCCCCCCC-----CchhhcCCCCCCEEEccCccCCCCC----chhhhcCCCCCceeccCcccccCCCcc----
Q 038019 210 KLKSLRFQGNSFQGP-----IPSSLSKLASLESLQMSDIYNVSSS----LDFVMSLKNLTDLSLRNALITGTIPFG---- 276 (866)
Q Consensus 210 ~L~~L~L~~N~l~~~-----~p~~~~~l~~L~~L~l~~n~~~~~~----~~~~~~l~~L~~L~L~~n~l~~~~p~~---- 276 (866)
+|+.+.+..|.|... +-..+..+.+|+.|+|.+|.++... ...+..|+.|+.|.+..|.++..-...
T Consensus 186 ~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~ 265 (388)
T COG5238 186 NLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRR 265 (388)
T ss_pred CceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHH
Confidence 677777777766522 1122344567777777776655222 124556666777777777665432221
Q ss_pred c--CCCCCcCEEeeecCcCcc
Q 038019 277 I--GELQMLQILDLSFNNLTG 295 (866)
Q Consensus 277 ~--~~l~~L~~L~Ls~N~l~~ 295 (866)
| -..++|..|-+.+|...+
T Consensus 266 f~e~~~p~l~~L~~~Yne~~~ 286 (388)
T COG5238 266 FNEKFVPNLMPLPGDYNERRG 286 (388)
T ss_pred hhhhcCCCccccccchhhhcC
Confidence 1 123455555555555543
|
|
| >KOG2982 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.27 E-value=1.4e-07 Score=95.34 Aligned_cols=62 Identities=18% Similarity=0.046 Sum_probs=27.8
Q ss_pred CCCCEEEccCccCCCCCc-hhhhcCCCCCceeccCcccccC-CCcccCCCCCcCEEeeecCcCc
Q 038019 233 ASLESLQMSDIYNVSSSL-DFVMSLKNLTDLSLRNALITGT-IPFGIGELQMLQILDLSFNNLT 294 (866)
Q Consensus 233 ~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~L~~n~l~~~-~p~~~~~l~~L~~L~Ls~N~l~ 294 (866)
+++..+.+..+.+.+... ..+..++.+..|+|+.|++..- --..+..++.|..|.+++|.+.
T Consensus 199 pnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~ 262 (418)
T KOG2982|consen 199 PNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLS 262 (418)
T ss_pred ccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccc
Confidence 345555555554442221 2333444555555555555421 1123444455555555555443
|
|
| >KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.25 E-value=1.6e-08 Score=112.97 Aligned_cols=179 Identities=22% Similarity=0.242 Sum_probs=123.0
Q ss_pred CcccCCCCCCCEEEccCCCCCCCCCccccCC-CCcCEEeccCCcCC----------CCCCccccCCCCCCEeeccCCCCC
Q 038019 82 PEELVTLQYLTVLKIDQNFFTGPLPSFIGNL-SRLMFLSFSHNDFS----------GPVPRELGNLKELTVLAFGTNNFS 150 (866)
Q Consensus 82 p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l-~~L~~L~Ls~N~l~----------~~~p~~l~~l~~L~~L~Ls~N~l~ 150 (866)
|-.|..+..|++|.|.++.|.. ...+..+ ..|++|-. +|.+. |.+..++. ...|.+.+.++|.+.
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~--~~GL~~lr~qLe~LIC-~~Sl~Al~~v~ascggd~~ns~~-Wn~L~~a~fsyN~L~ 177 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLST--AKGLQELRHQLEKLIC-HNSLDALRHVFASCGGDISNSPV-WNKLATASFSYNRLV 177 (1096)
T ss_pred CceeccccceeeEEecCcchhh--hhhhHHHHHhhhhhhh-hccHHHHHHHHHHhccccccchh-hhhHhhhhcchhhHH
Confidence 5578888999999999988763 1112212 23444432 23221 12222221 236778888888887
Q ss_pred CCCchhhcCCCCccEEEeecCCCCCCChhhhhcCcCCCEEEecCCCCCCCCcccccCCCCCCeEEccCCCCCCCCchhhc
Q 038019 151 GALPPELGNLAKLEQLYIDSCGAGGEIPSTFAKLRNMQTLWASDNPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLS 230 (866)
Q Consensus 151 ~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~ 230 (866)
..-.++.-++.|+.|+|++|+++.. +.+..|++|++|||++|.++ .+|..-.--.+|+.|.|++|.++.. ..+.
T Consensus 178 -~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~lrnN~l~tL--~gie 251 (1096)
T KOG1859|consen 178 -LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLNLRNNALTTL--RGIE 251 (1096)
T ss_pred -hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhhhheeeeecccHHHhh--hhHH
Confidence 5566788888999999999998765 37888999999999999988 4444322122489999999988743 4577
Q ss_pred CCCCCCEEEccCccCC-CCCchhhhcCCCCCceeccCcccc
Q 038019 231 KLASLESLQMSDIYNV-SSSLDFVMSLKNLTDLSLRNALIT 270 (866)
Q Consensus 231 ~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~ 270 (866)
+|.+|+.||+++|-+. ......+..+..|+.|+|.+|.+.
T Consensus 252 ~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 252 NLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred hhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 8888889999888765 334456667778888888888765
|
|
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.21 E-value=2.7e-08 Score=100.44 Aligned_cols=178 Identities=16% Similarity=0.177 Sum_probs=121.9
Q ss_pred CCcCEEeccCCcCCC-CCCccccCCCCCCEeeccCCCCCCCCchhhcCCCCccEEEeecCC-CCCC-ChhhhhcCcCCCE
Q 038019 113 SRLMFLSFSHNDFSG-PVPRELGNLKELTVLAFGTNNFSGALPPELGNLAKLEQLYIDSCG-AGGE-IPSTFAKLRNMQT 189 (866)
Q Consensus 113 ~~L~~L~Ls~N~l~~-~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~-l~~~-~p~~~~~l~~L~~ 189 (866)
++|++|||++..|+- .+-.-+..+.+|+.|.|.++++.+.+...++.-.+|+.|+|+.+. ++.. ..--+.+++.|..
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 358888888877752 222335667788888888888888888888888888888887753 3322 2234667888888
Q ss_pred EEecCCCCCCCCccc-ccC-CCCCCeEEccCCCC---CCCCchhhcCCCCCCEEEccCccCC-CCCchhhhcCCCCCcee
Q 038019 190 LWASDNPFTGKIPDF-IGN-WTKLKSLRFQGNSF---QGPIPSSLSKLASLESLQMSDIYNV-SSSLDFVMSLKNLTDLS 263 (866)
Q Consensus 190 L~L~~N~l~~~~p~~-l~~-l~~L~~L~L~~N~l---~~~~p~~~~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~ 263 (866)
|+|+.+.++...-.. +.. -++|+.|+|+++.- ...+..-...+++|..|||+++... ..-...+..++-|++|.
T Consensus 265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lS 344 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLS 344 (419)
T ss_pred cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeee
Confidence 888888776432211 111 14688888887532 1122333467899999999987654 44455778899999999
Q ss_pred ccCcccccCCCc---ccCCCCCcCEEeeecCc
Q 038019 264 LRNALITGTIPF---GIGELQMLQILDLSFNN 292 (866)
Q Consensus 264 L~~n~l~~~~p~---~~~~l~~L~~L~Ls~N~ 292 (866)
++.|.. .+|. .+...+.|.+|++.++-
T Consensus 345 lsRCY~--i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 345 LSRCYD--IIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred hhhhcC--CChHHeeeeccCcceEEEEecccc
Confidence 998864 3454 46778999999987653
|
|
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.21 E-value=4.3e-08 Score=99.02 Aligned_cols=221 Identities=21% Similarity=0.236 Sum_probs=151.4
Q ss_pred CCEEEccCCCCCCCCCccccCCC--CcCEEeccCCcCCCC-CCccccC-CCCCCEeeccCCCCCCC-CchhhcCCCCccE
Q 038019 91 LTVLKIDQNFFTGPLPSFIGNLS--RLMFLSFSHNDFSGP-VPRELGN-LKELTVLAFGTNNFSGA-LPPELGNLAKLEQ 165 (866)
Q Consensus 91 L~~L~Ls~n~l~~~~p~~l~~l~--~L~~L~Ls~N~l~~~-~p~~l~~-l~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~ 165 (866)
=+.||+.+-.|. |..++.+. ....+.+....+... +.+.+.- -+.|++|||++..++.. +-..+..+.+|+.
T Consensus 138 W~~lDl~~r~i~---p~~l~~l~~rgV~v~Rlar~~~~~prlae~~~~frsRlq~lDLS~s~it~stl~~iLs~C~kLk~ 214 (419)
T KOG2120|consen 138 WQTLDLTGRNIH---PDVLGRLLSRGVIVFRLARSFMDQPRLAEHFSPFRSRLQHLDLSNSVITVSTLHGILSQCSKLKN 214 (419)
T ss_pred eeeeccCCCccC---hhHHHHHHhCCeEEEEcchhhhcCchhhhhhhhhhhhhHHhhcchhheeHHHHHHHHHHHHhhhh
Confidence 356777766554 55555553 344555554433322 1122221 24699999999888632 3345678999999
Q ss_pred EEeecCCCCCCChhhhhcCcCCCEEEecCCC-CCCC-CcccccCCCCCCeEEccCCCCCCCCch-hhcCC-CCCCEEEcc
Q 038019 166 LYIDSCGAGGEIPSTFAKLRNMQTLWASDNP-FTGK-IPDFIGNWTKLKSLRFQGNSFQGPIPS-SLSKL-ASLESLQMS 241 (866)
Q Consensus 166 L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~-l~~~-~p~~l~~l~~L~~L~L~~N~l~~~~p~-~~~~l-~~L~~L~l~ 241 (866)
|.|.++++...+...+.+-.+|+.|+|+.+. ++.. ..-.+.+++.|..|+|+.+.+....-. .+.+. ++|+.|+|+
T Consensus 215 lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNls 294 (419)
T KOG2120|consen 215 LSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLS 294 (419)
T ss_pred ccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhh
Confidence 9999999999999999999999999999863 4321 223457889999999999987744322 22222 578888888
Q ss_pred CccC--CCCCch-hhhcCCCCCceeccCcc-cccCCCcccCCCCCcCEEeeecCcCcccCCcc---cCCCCCCcEEECcC
Q 038019 242 DIYN--VSSSLD-FVMSLKNLTDLSLRNAL-ITGTIPFGIGELQMLQILDLSFNNLTGQIPAT---LFNIDSLEYLFLGN 314 (866)
Q Consensus 242 ~n~~--~~~~~~-~~~~l~~L~~L~L~~n~-l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~---l~~l~~L~~L~L~~ 314 (866)
+..- ...... ....+++|..|||++|. ++......|-+++.|++|.++.|.. .+|.. +...|+|.+|++.+
T Consensus 295 G~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g 372 (419)
T KOG2120|consen 295 GYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFG 372 (419)
T ss_pred hhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcC--CChHHeeeeccCcceEEEEecc
Confidence 7532 222333 34568999999999774 5555555678899999999998874 56654 45679999999865
Q ss_pred CC
Q 038019 315 NS 316 (866)
Q Consensus 315 N~ 316 (866)
+-
T Consensus 373 ~v 374 (419)
T KOG2120|consen 373 CV 374 (419)
T ss_pred cc
Confidence 53
|
|
| >KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.20 E-value=2.9e-08 Score=110.99 Aligned_cols=125 Identities=29% Similarity=0.231 Sum_probs=59.9
Q ss_pred CCCeEEccCCCCCCCCchhhcCCCCCCEEEccCccCCCCCchhhhcCCCCCceeccCcccccCCCcccCCCCCcCEEeee
Q 038019 210 KLKSLRFQGNSFQGPIPSSLSKLASLESLQMSDIYNVSSSLDFVMSLKNLTDLSLRNALITGTIPFGIGELQMLQILDLS 289 (866)
Q Consensus 210 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls 289 (866)
.|...+++.|.+. ....++.-++.|+.|+|++|++.... .+..+++|++|||+.|.+....-.....+. |+.|.|+
T Consensus 165 ~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lr 240 (1096)
T KOG1859|consen 165 KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLR 240 (1096)
T ss_pred hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhh-heeeeec
Confidence 3455555555554 33444444555555555555443322 445555555555555555522111222222 5555566
Q ss_pred cCcCcccCCcccCCCCCCcEEECcCCCCccc---CCcccCCCCCEEEeeCCCCC
Q 038019 290 FNNLTGQIPATLFNIDSLEYLFLGNNSLSGT---LPDQKSENLQKIDLSHNHLS 340 (866)
Q Consensus 290 ~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~---~p~~~~~~L~~L~Ls~N~l~ 340 (866)
+|.++. -..+.++.+|+.||+++|-|.+. .|.+....|+.|+|.+|.+-
T Consensus 241 nN~l~t--L~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 241 NNALTT--LRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred ccHHHh--hhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 555542 12344555555566666655432 22222344555555555553
|
|
| >PLN03224 probable serine/threonine protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.20 E-value=1.7e-06 Score=99.10 Aligned_cols=76 Identities=13% Similarity=0.096 Sum_probs=52.0
Q ss_pred CCCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCC----------------------CCchhH
Q 038019 641 SKPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGH----------------------LTEKAD 698 (866)
Q Consensus 641 ~~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~----------------------~t~ksD 698 (866)
...|++...+...++.|||.+..+..+....... ..+|+.|+|||.+.... ...+.|
T Consensus 336 Kp~NILl~~~~~~kL~DFGla~~~~~~~~~~~~~-g~~tp~Y~aPE~l~~~~~~~~~~~~~~~~~l~~~~~~yg~~~~~D 414 (507)
T PLN03224 336 KPENLLVTVDGQVKIIDFGAAVDMCTGINFNPLY-GMLDPRYSPPEELVMPQSCPRAPAPAMAALLSPFAWLYGRPDLFD 414 (507)
T ss_pred chHhEEECCCCcEEEEeCcCccccccCCccCccc-cCCCcceeChhhhcCCCCCCccchhhhhhhhhhhHHhcCCCCccc
Confidence 3346776666778899999987765543211111 13478999999875322 123579
Q ss_pred HHHHHHHHHHHHhcCC-CCC
Q 038019 699 VFSFGVVALEIISGRA-SSD 717 (866)
Q Consensus 699 VySfGvvLlEl~tg~~-p~~ 717 (866)
|||+|||++||++|.. |+.
T Consensus 415 vwSlGvil~em~~~~l~p~~ 434 (507)
T PLN03224 415 SYTAGVLLMQMCVPELRPVA 434 (507)
T ss_pred hhhHHHHHHHHHhCCCCCcc
Confidence 9999999999999875 554
|
|
| >KOG1290 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.18 E-value=2.3e-06 Score=92.41 Aligned_cols=131 Identities=15% Similarity=0.233 Sum_probs=88.7
Q ss_pred CHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCCchh----
Q 038019 647 GYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSLDM---- 722 (866)
Q Consensus 647 ~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~~---- 722 (866)
...+++.|+.|||-+-..- +-|.-..-|..|.|||++.+..|++.+|+|||+|+++||+||-.-|++..+.
T Consensus 387 ~~~di~vKIaDlGNACW~~-----khFT~DIQTRQYRapEVllGsgY~~~ADiWS~AC~~FELaTGDyLFePhsG~~Y~r 461 (590)
T KOG1290|consen 387 PECDIRVKIADLGNACWVH-----KHFTEDIQTRQYRAPEVLLGSGYSTSADIWSTACMAFELATGDYLFEPHSGENYSR 461 (590)
T ss_pred CccceeEEEeeccchhhhh-----hhhchhhhhhhccCcceeecCCCCCchhHHHHHHHHHHhhcCceeecCCCCCCCCc
Confidence 4556788899998665432 2244456789999999999999999999999999999999998877764432
Q ss_pred hhhcH---HHHH----HHHhhc-----------CCcccc--cCCc-----c-c--ccCHHHHHHHHHHHHHccCCCCCCC
Q 038019 723 EKIYL---LEWA----WNLHEN-----------NQSFGL--VDPT-----L-T--EFNDKEALRVIGVALLCTQTSPMMR 774 (866)
Q Consensus 723 ~~~~l---~~~~----~~~~~~-----------~~~~~~--~d~~-----l-~--~~~~~~~~~~~~la~~C~~~~p~~R 774 (866)
++-++ ++.. +..... |.+..| +.|- | . ++..+++.++.+...-.++.+|++|
T Consensus 462 DEDHiA~i~ELLG~iPr~ia~~Gk~SRdFFnr~G~LrhI~~LK~WpL~~VL~eKY~~s~e~A~~fsdFL~PmLef~PeKR 541 (590)
T KOG1290|consen 462 DEDHIALIMELLGKIPRKIALGGKYSRDFFNRRGELRHIRRLKPWPLYEVLIEKYEWSEEDAQQFSDFLSPMLEFDPEKR 541 (590)
T ss_pred cHHHHHHHHHHHhhccHHHHhcCcchHhhhccccceecccccCCCcHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCcccc
Confidence 11122 1111 111122 222221 1111 1 1 3456788888888888899999999
Q ss_pred CCHHHHHH
Q 038019 775 PPMSRVVA 782 (866)
Q Consensus 775 Psm~~V~~ 782 (866)
||+.+.++
T Consensus 542 ~tA~~cl~ 549 (590)
T KOG1290|consen 542 PTAAQCLK 549 (590)
T ss_pred ccHHHHhc
Confidence 99998764
|
|
| >KOG0586 consensus Serine/threonine protein kinase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.18 E-value=4.5e-07 Score=100.70 Aligned_cols=74 Identities=24% Similarity=0.310 Sum_probs=63.7
Q ss_pred CcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCC-CchhHHHHHHHHHHHHHhcCCCCCCC
Q 038019 643 PNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHL-TEKADVFSFGVVALEIISGRASSDKS 719 (866)
Q Consensus 643 ~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~-t~ksDVySfGvvLlEl~tg~~p~~~~ 719 (866)
-|++++.++..++.|||.++.+-.| ..-+...|++.|.|||..++.++ ..++|+||.|||||-|+.|.-||+..
T Consensus 184 eNilL~~~mnikIaDfgfS~~~~~~---~~lqt~cgsppyAaPEl~~g~~y~gpe~D~Wslgvvly~LV~GsLPFDG~ 258 (596)
T KOG0586|consen 184 ENILLDENMNIKIADFGFSTFFDYG---LMLQTFCGSPPYAAPELFNGKKYDGPEVDIWSLGVVLYALVEGSLPFDGQ 258 (596)
T ss_pred hhcccccccceeeeccccceeeccc---ccccccCCCCCccChHhhcCcccCCcceehhhhhhhheeeeecccccCCc
Confidence 4889999999999999999988754 44556689999999999987665 58999999999999999999999853
|
|
| >KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.15 E-value=1.7e-06 Score=102.11 Aligned_cols=126 Identities=23% Similarity=0.316 Sum_probs=84.7
Q ss_pred CCcccCHHHHHHHhcCCccccccCCCCceeEE-EeecCCCCccCceeee----c-CCCCchhHHHHHHHHHHHHHhcCCC
Q 038019 642 KPNIFGYAELRSATKDFNRSNKLGEGGYGPVY-KVTANSYGYLAPEYAM----R-GHLTEKADVFSFGVVALEIISGRAS 715 (866)
Q Consensus 642 ~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy-~~~~gt~gY~aPE~~~----~-~~~t~ksDVySfGvvLlEl~tg~~p 715 (866)
+-|++.+.....+++|||..-.+...| +|- -..+||+-|++||.+. + |.|...+|.||.||++|||+.|.-|
T Consensus 203 PDNvLld~~GHikLADFGsClkm~~dG--~V~s~~aVGTPDYISPEvLqs~~~~~g~yG~ecDwWSlGV~~YEMlyG~TP 280 (1317)
T KOG0612|consen 203 PDNVLLDKSGHIKLADFGSCLKMDADG--TVRSSVAVGTPDYISPEVLQSQGDGKGEYGRECDWWSLGVFMYEMLYGETP 280 (1317)
T ss_pred cceeEecccCcEeeccchhHHhcCCCC--cEEeccccCCCCccCHHHHHhhcCCccccCCccchhhhHHHHHHHHcCCCc
Confidence 347888888889999999998888665 343 3457999999999875 2 6899999999999999999999999
Q ss_pred CCCCchhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCC---HHHHHH
Q 038019 716 SDKSLDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPP---MSRVVA 782 (866)
Q Consensus 716 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPs---m~~V~~ 782 (866)
|... .+++-....+........ |.. ....+++..+++ ++.|- |+.|-. ..++-.
T Consensus 281 FYad------slveTY~KIm~hk~~l~F--P~~-~~VSeeakdLI~-~ll~~---~e~RLgrngiedik~ 337 (1317)
T KOG0612|consen 281 FYAD------SLVETYGKIMNHKESLSF--PDE-TDVSEEAKDLIE-ALLCD---REVRLGRNGIEDIKN 337 (1317)
T ss_pred chHH------HHHHHHHHHhchhhhcCC--Ccc-cccCHHHHHHHH-HHhcC---hhhhcccccHHHHHh
Confidence 9742 344444333332211111 100 012345555554 44564 556655 777653
|
|
| >KOG0669 consensus Cyclin T-dependent kinase CDK9 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.13 E-value=1.6e-06 Score=85.76 Aligned_cols=87 Identities=14% Similarity=0.159 Sum_probs=67.3
Q ss_pred hhccCCCCCcccCHHHHHHHhcCCccccccCC--CCceeEEEeecCCCCccCceeee-cCCCCchhHHHHHHHHHHHHHh
Q 038019 635 VLVGIGSKPNIFGYAELRSATKDFNRSNKLGE--GGYGPVYKVTANSYGYLAPEYAM-RGHLTEKADVFSFGVVALEIIS 711 (866)
Q Consensus 635 ~~~~~~~~~~~~~~~~~~~~~~dF~~~~~lg~--g~~g~vy~~~~gt~gY~aPE~~~-~~~~t~ksDVySfGvvLlEl~t 711 (866)
++++.-...|++...+...++.|||+++.+.. .+-+.-|.-.+-|.-|..||.+. ...++.+.|||.-|||+.||.|
T Consensus 145 ilHRDmKaaNvLIt~dgilklADFGlar~fs~~~n~~kprytnrvvTLwYrppEllLG~r~yg~~iDiWgAgCimaeMwt 224 (376)
T KOG0669|consen 145 ILHRDMKAANVLITKDGILKLADFGLARAFSTSKNVVKPRYTNRVVTLWYRPPELLLGDREYGPPIDIWGAGCIMAEMWT 224 (376)
T ss_pred HHhhcccHhhEEEcCCceEEeeccccccceecccccCCCCcccceeeeecCCHHHhhcccccCCcchhHhHHHHHHHHHc
Confidence 34444445688888888889999999987653 33344477777899999999876 4689999999999999999999
Q ss_pred cCCCCCCCch
Q 038019 712 GRASSDKSLD 721 (866)
Q Consensus 712 g~~p~~~~~~ 721 (866)
|.+-+.....
T Consensus 225 rspimqgnte 234 (376)
T KOG0669|consen 225 RSPIMQGNTE 234 (376)
T ss_pred cCccccCChH
Confidence 9877765443
|
|
| >COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.12 E-value=8.1e-07 Score=88.82 Aligned_cols=236 Identities=18% Similarity=0.186 Sum_probs=159.6
Q ss_pred eEEEEEEcccCcCCC----CCcccCCCCCCCEEEccCCCC---CCCCCc-------cccCCCCcCEEeccCCcCCCCCCc
Q 038019 66 HITKLRVYGLNKKGV----IPEELVTLQYLTVLKIDQNFF---TGPLPS-------FIGNLSRLMFLSFSHNDFSGPVPR 131 (866)
Q Consensus 66 ~v~~L~l~~~~l~~~----~p~~l~~l~~L~~L~Ls~n~l---~~~~p~-------~l~~l~~L~~L~Ls~N~l~~~~p~ 131 (866)
.++.++|++|-+... +...|.+-.+|+..+++.-.. ...+++ .+-+|++|+..+||.|.|....|.
T Consensus 31 ~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~e 110 (388)
T COG5238 31 ELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFPE 110 (388)
T ss_pred ceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccch
Confidence 578999999988654 445677788999999987432 122333 356899999999999999866665
Q ss_pred c----ccCCCCCCEeeccCCCCCCCCchhh-------------cCCCCccEEEeecCCCCCCC----hhhhhcCcCCCEE
Q 038019 132 E----LGNLKELTVLAFGTNNFSGALPPEL-------------GNLAKLEQLYIDSCGAGGEI----PSTFAKLRNMQTL 190 (866)
Q Consensus 132 ~----l~~l~~L~~L~Ls~N~l~~~~p~~l-------------~~l~~L~~L~L~~n~l~~~~----p~~~~~l~~L~~L 190 (866)
. ++.-+.|.+|.|++|.+.-.--..+ .+-+.|+......|++..-. ...|..-.+|+.+
T Consensus 111 ~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~v 190 (388)
T COG5238 111 ELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLKEV 190 (388)
T ss_pred HHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCceeE
Confidence 4 5667899999999998742221222 34578999999999875322 2334444689999
Q ss_pred EecCCCCCCC-----CcccccCCCCCCeEEccCCCCCCC----CchhhcCCCCCCEEEccCccCCCCCchh----h--hc
Q 038019 191 WASDNPFTGK-----IPDFIGNWTKLKSLRFQGNSFQGP----IPSSLSKLASLESLQMSDIYNVSSSLDF----V--MS 255 (866)
Q Consensus 191 ~L~~N~l~~~-----~p~~l~~l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~l~~n~~~~~~~~~----~--~~ 255 (866)
.+..|.|.-. +-..+..+.+|+.|+|+.|-++-. +...+...+.|+.|.+.+|-+....... | ..
T Consensus 191 ki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~ 270 (388)
T COG5238 191 KIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKF 270 (388)
T ss_pred EeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhhhhc
Confidence 9999977632 112345678999999999998733 2344556677999999998877444332 2 23
Q ss_pred CCCCCceeccCcccccCCCcccCCCCCcCEEeeecCcCcccCCcccCCCCCCcEEECcCCCCc
Q 038019 256 LKNLTDLSLRNALITGTIPFGIGELQMLQILDLSFNNLTGQIPATLFNIDSLEYLFLGNNSLS 318 (866)
Q Consensus 256 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~ 318 (866)
.++|..|...+|...+.+. ++++.|.+. -..+|-|..|.+.+|++.
T Consensus 271 ~p~l~~L~~~Yne~~~~~i-----------~~~~l~~~e------~~~~p~L~~le~ngNr~~ 316 (388)
T COG5238 271 VPNLMPLPGDYNERRGGII-----------LDISLNEFE------QDAVPLLVDLERNGNRIK 316 (388)
T ss_pred CCCccccccchhhhcCcee-----------eeechhhhh------hcccHHHHHHHHccCcch
Confidence 6788999999888765432 233333332 123445555666666665
|
|
| >cd00180 PKc Catalytic domain of Protein Kinases | Back alignment and domain information |
|---|
Probab=98.11 E-value=1.4e-06 Score=87.95 Aligned_cols=92 Identities=24% Similarity=0.341 Sum_probs=69.7
Q ss_pred CcccCHH-HHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecC-CCCchhHHHHHHHHHHHHHhcCCCCCCCc
Q 038019 643 PNIFGYA-ELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRG-HLTEKADVFSFGVVALEIISGRASSDKSL 720 (866)
Q Consensus 643 ~~~~~~~-~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~-~~t~ksDVySfGvvLlEl~tg~~p~~~~~ 720 (866)
.|++... +...++.||+.......... ......+...|++||..... ..+.++|+|++|++++|+
T Consensus 121 ~ni~~~~~~~~~~l~d~~~~~~~~~~~~--~~~~~~~~~~~~~pe~~~~~~~~~~~~D~~~lg~~~~~l----------- 187 (215)
T cd00180 121 ENILLDSDNGKVKLADFGLSKLLTSDKS--LLKTIVGTPAYMAPEVLLGKGYYSEKSDIWSLGVILYEL----------- 187 (215)
T ss_pred hhEEEeCCCCcEEEecCCceEEccCCcc--hhhcccCCCCccChhHhcccCCCCchhhhHHHHHHHHHH-----------
Confidence 3555554 45667788887776654321 12223577899999998877 889999999999999998
Q ss_pred hhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 038019 721 DMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAM 783 (866)
Q Consensus 721 ~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~ 783 (866)
..+.++...|++.+|++||++.++++.
T Consensus 188 ------------------------------------~~~~~~l~~~l~~~p~~R~~~~~l~~~ 214 (215)
T cd00180 188 ------------------------------------PELKDLIRKMLQKDPEKRPSAKEILEH 214 (215)
T ss_pred ------------------------------------HHHHHHHHHHhhCCcccCcCHHHHhhC
Confidence 334556668999999999999999864
|
Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which |
| >KOG1033 consensus eIF-2alpha kinase PEK/EIF2AK3 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.10 E-value=1.2e-06 Score=96.16 Aligned_cols=68 Identities=19% Similarity=0.314 Sum_probs=53.4
Q ss_pred CcccCHHHHHHHhcCCccccccCCCC-----ceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHh
Q 038019 643 PNIFGYAELRSATKDFNRSNKLGEGG-----YGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIIS 711 (866)
Q Consensus 643 ~~~~~~~~~~~~~~dF~~~~~lg~g~-----~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~t 711 (866)
.++|.-.+-+.++.|||+.-....+. +.. ....+||.-||+||.+.+.+|+.|+||||+|++|+|+++
T Consensus 385 ~nif~~~d~q~kIgDFgl~ts~~~~~~~~~~~a~-~t~~~gt~~YmsPEQi~g~~y~~kvdIyaLGlil~EL~~ 457 (516)
T KOG1033|consen 385 SNIFFSDDDQLKIGDFGLVTSQDKDETVAPAAAS-HTQQVGTLLYMSPEQIRGQQYSEKVDIYALGLILAELLI 457 (516)
T ss_pred cccccccchhhhhhhhhheeecccCCcccchhhh-hhhcccccccCCHHHHhhhhhhhhcchhhHHHHHHHHHH
Confidence 46766666688899998765554443 111 223479999999999999999999999999999999987
|
|
| >KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.09 E-value=1.8e-06 Score=97.40 Aligned_cols=69 Identities=22% Similarity=0.289 Sum_probs=59.8
Q ss_pred HHHHhcCCccccccCCCCceeEEEeecCCCCccCceeee-cCCCCchhHHHHHHHHHHHHHhcCCCCCCCchh
Q 038019 651 LRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAM-RGHLTEKADVFSFGVVALEIISGRASSDKSLDM 722 (866)
Q Consensus 651 ~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~-~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~~ 722 (866)
..-|+.|||.++.+.++. -+...+||.-|.|||... .+.|+..+|.|||||++||.+||..||-+....
T Consensus 161 ~IyKLtDfG~Arel~d~s---~~~S~vGT~~YLhPel~E~q~~y~~tVDLWS~GvtlY~caTG~lPF~p~~~p 230 (732)
T KOG4250|consen 161 SIYKLTDFGAARELDDNS---LFTSLVGTEEYLHPELYERQKKYTATVDLWSFGVTLYECATGELPFIPFGGP 230 (732)
T ss_pred eEEeeecccccccCCCCC---eeeeecCchhhcChHHHhhccCcCceeehhhhhhHHHHHhccCCCCCcCCCc
Confidence 345789999999999876 466678999999999888 489999999999999999999999999865443
|
|
| >KOG4236 consensus Serine/threonine protein kinase PKC mu/PKD and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.99 E-value=4.1e-07 Score=98.35 Aligned_cols=65 Identities=23% Similarity=0.367 Sum_probs=59.2
Q ss_pred HHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCC
Q 038019 652 RSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKS 719 (866)
Q Consensus 652 ~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~ 719 (866)
..|+.|||.+++||+-.| .+.++||+.|+|||+++...|...-|.||.||++|--++|..||...
T Consensus 705 QvKlCDFGfARiIgEksF---RrsVVGTPAYLaPEVLrnkGyNrSLDMWSVGVIiYVsLSGTFPFNEd 769 (888)
T KOG4236|consen 705 QVKLCDFGFARIIGEKSF---RRSVVGTPAYLAPEVLRNKGYNRSLDMWSVGVIIYVSLSGTFPFNED 769 (888)
T ss_pred ceeeccccceeecchhhh---hhhhcCCccccCHHHHhhccccccccceeeeEEEEEEecccccCCCc
Confidence 467899999999999877 45678999999999999999999999999999999999999999753
|
|
| >KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.95 E-value=8.1e-07 Score=79.97 Aligned_cols=89 Identities=18% Similarity=0.247 Sum_probs=45.8
Q ss_pred CCccEEEeecCCCCCCChhhhhcCcCCCEEEecCCCCCCCCcccccCCCCCCeEEccCCCCCCCCchhhcCCCCCCEEEc
Q 038019 161 AKLEQLYIDSCGAGGEIPSTFAKLRNMQTLWASDNPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLESLQM 240 (866)
Q Consensus 161 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l 240 (866)
..|...+|++|.+....+..-.+.+.++.|+|++|.|+ .+|.++..++.|+.|+++.|.+. ..|..+..|.+|..|+.
T Consensus 53 ~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds 130 (177)
T KOG4579|consen 53 YELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDS 130 (177)
T ss_pred ceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcC
Confidence 34444455555554333322233345556666666665 45555666666666666666665 34445555555555555
Q ss_pred cCccCCCCCch
Q 038019 241 SDIYNVSSSLD 251 (866)
Q Consensus 241 ~~n~~~~~~~~ 251 (866)
.+|.....+.+
T Consensus 131 ~~na~~eid~d 141 (177)
T KOG4579|consen 131 PENARAEIDVD 141 (177)
T ss_pred CCCccccCcHH
Confidence 55444433333
|
|
| >KOG0604 consensus MAP kinase-activated protein kinase 2 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.94 E-value=5.9e-06 Score=84.02 Aligned_cols=119 Identities=16% Similarity=0.145 Sum_probs=75.0
Q ss_pred HHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCCchhhhhcHHHHH
Q 038019 652 RSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSLDMEKIYLLEWA 731 (866)
Q Consensus 652 ~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~~~~~~l~~~~ 731 (866)
..++.|||.++.-.+.+ .-..-.-|+-|.|||+....+|...+|.||.||++|-|++|-+||....+. .+.-=.
T Consensus 202 ~lKLtDfGFAK~t~~~~---~L~TPc~TPyYvaPevlg~eKydkscdmwSlgVimYIlLCGyPPFYS~hg~---aispgM 275 (400)
T KOG0604|consen 202 PLKLTDFGFAKETQEPG---DLMTPCFTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGL---AISPGM 275 (400)
T ss_pred ceEecccccccccCCCc---cccCCcccccccCHHHhCchhcCCCCCccchhHHHHHhhcCCCcccccCCc---cCChhH
Confidence 35688999988654211 012234578999999999999999999999999999999999998754321 111001
Q ss_pred HHHhhcCCcccccCCcccccCHHHHHHHHH-HHHHccCCCCCCCCCHHHHHH
Q 038019 732 WNLHENNQSFGLVDPTLTEFNDKEALRVIG-VALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 732 ~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~-la~~C~~~~p~~RPsm~~V~~ 782 (866)
+..+..|.. +.-+| .-.++.+..+ ++..-+..+|.+|-|+.+|+.
T Consensus 276 k~rI~~gqy-~FP~p-----EWs~VSe~aKdlIR~LLkt~PteRlTI~~~m~ 321 (400)
T KOG0604|consen 276 KRRIRTGQY-EFPEP-----EWSCVSEAAKDLIRKLLKTEPTERLTIEEVMD 321 (400)
T ss_pred HhHhhccCc-cCCCh-----hHhHHHHHHHHHHHHHhcCCchhheeHHHhhc
Confidence 111222211 11111 1123333333 444556899999999999975
|
|
| >KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.93 E-value=5.7e-07 Score=80.94 Aligned_cols=87 Identities=25% Similarity=0.307 Sum_probs=47.8
Q ss_pred cCCCCCCCEEEccCCCCCCCCCccc-cCCCCcCEEeccCCcCCCCCCccccCCCCCCEeeccCCCCCCCCchhhcCCCCc
Q 038019 85 LVTLQYLTVLKIDQNFFTGPLPSFI-GNLSRLMFLSFSHNDFSGPVPRELGNLKELTVLAFGTNNFSGALPPELGNLAKL 163 (866)
Q Consensus 85 l~~l~~L~~L~Ls~n~l~~~~p~~l-~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L 163 (866)
+....+|...+|++|.|.. .|..| ...+.++.|+|++|.|+ .+|.++..++.|+.|+++.|.+. ..|..+..|.+|
T Consensus 49 l~~~~el~~i~ls~N~fk~-fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l 125 (177)
T KOG4579|consen 49 LSKGYELTKISLSDNGFKK-FPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKL 125 (177)
T ss_pred HhCCceEEEEecccchhhh-CCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhH
Confidence 3444555666666666653 33333 33445666666666665 45555666666666666666655 344455455555
Q ss_pred cEEEeecCCCC
Q 038019 164 EQLYIDSCGAG 174 (866)
Q Consensus 164 ~~L~L~~n~l~ 174 (866)
-.|+..+|.+.
T Consensus 126 ~~Lds~~na~~ 136 (177)
T KOG4579|consen 126 DMLDSPENARA 136 (177)
T ss_pred HHhcCCCCccc
Confidence 55555555443
|
|
| >KOG2982 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.92 E-value=3.2e-06 Score=85.69 Aligned_cols=217 Identities=18% Similarity=0.156 Sum_probs=105.1
Q ss_pred CCccccCCCCcCEEeccCCcCCCCCC-cccc-CCCCCCEeeccCCCCCC--CCchhhcCCCCccEEEeecCCCCCCChhh
Q 038019 105 LPSFIGNLSRLMFLSFSHNDFSGPVP-RELG-NLKELTVLAFGTNNFSG--ALPPELGNLAKLEQLYIDSCGAGGEIPST 180 (866)
Q Consensus 105 ~p~~l~~l~~L~~L~Ls~N~l~~~~p-~~l~-~l~~L~~L~Ls~N~l~~--~~p~~l~~l~~L~~L~L~~n~l~~~~p~~ 180 (866)
.+-.+..+.-|+.|.+.++.|...-. ..|+ ..+.++.|||.+|.++. .+..-+.+|+.|+.|+|+.|.+...+-..
T Consensus 37 s~~~v~s~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~l 116 (418)
T KOG2982|consen 37 SYLGVSSLRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSL 116 (418)
T ss_pred ceeeeccccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccC
Confidence 33333444455555555555542111 1232 34667777777777763 22333456666667777666665433221
Q ss_pred hhcCcCCCEEEecCCCCCCC-CcccccCCCCCCeEEccCCCCCCCCchhhcCCCCCCEEEccCccCCCCC--chhhhcCC
Q 038019 181 FAKLRNMQTLWASDNPFTGK-IPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLESLQMSDIYNVSSS--LDFVMSLK 257 (866)
Q Consensus 181 ~~~l~~L~~L~L~~N~l~~~-~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~--~~~~~~l~ 257 (866)
-..+.+|+.|-|.+..+.-. ....+..+|.++.|.++.|++. .+.+.++...... ...+..++
T Consensus 117 p~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~r--------------q~n~Dd~c~e~~s~~v~tlh~~~ 182 (418)
T KOG2982|consen 117 PLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLR--------------QLNLDDNCIEDWSTEVLTLHQLP 182 (418)
T ss_pred cccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhh--------------hhccccccccccchhhhhhhcCC
Confidence 12345666666665554311 2223344555555555555332 1111111111100 01122233
Q ss_pred CCCceeccCcccccCCCcccCCCCCcCEEeeecCcCcccC-CcccCCCCCCcEEECcCCCCccc---CCcccCCCCCEEE
Q 038019 258 NLTDLSLRNALITGTIPFGIGELQMLQILDLSFNNLTGQI-PATLFNIDSLEYLFLGNNSLSGT---LPDQKSENLQKID 333 (866)
Q Consensus 258 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~L~~N~l~g~---~p~~~~~~L~~L~ 333 (866)
++..+.++-|++... ++++..+-+..|.+...- -.....+|.+..|+|+.|++..- -....++.|..|.
T Consensus 183 c~~~~w~~~~~l~r~-------Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlR 255 (418)
T KOG2982|consen 183 CLEQLWLNKNKLSRI-------FPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLR 255 (418)
T ss_pred cHHHHHHHHHhHHhh-------cccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheee
Confidence 444444444444432 345666667777665322 22344456666777777777531 1112346677777
Q ss_pred eeCCCCCCc
Q 038019 334 LSHNHLSGT 342 (866)
Q Consensus 334 Ls~N~l~g~ 342 (866)
+++|++...
T Consensus 256 v~~~Pl~d~ 264 (418)
T KOG2982|consen 256 VSENPLSDP 264 (418)
T ss_pred ccCCccccc
Confidence 777776543
|
|
| >KOG0576 consensus Mitogen-activated protein kinase kinase kinase kinase (MAP4K), germinal center kinase family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.78 E-value=9.2e-06 Score=90.91 Aligned_cols=131 Identities=19% Similarity=0.170 Sum_probs=86.3
Q ss_pred ccCCCCCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeee---cCCCCchhHHHHHHHHHHHHHhcC
Q 038019 637 VGIGSKPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAM---RGHLTEKADVFSFGVVALEIISGR 713 (866)
Q Consensus 637 ~~~~~~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~---~~~~t~ksDVySfGvvLlEl~tg~ 713 (866)
++.....|+++.++...+..|||.+..||. +-.-.|...||+.|||||++. .|.|.+++|||+.|+.-.|+---+
T Consensus 135 hRdiKGanilltd~gDvklaDfgvsaqita--ti~KrksfiGtpywmapEvaaverkggynqlcdiwa~gitAiel~eLq 212 (829)
T KOG0576|consen 135 HRDIKGANILLTDEGDVKLADFGVSAQITA--TIAKRKSFIGTPYWMAPEVAAVERKGGYNQLCDIWALGITAIELGELQ 212 (829)
T ss_pred cccccccceeecccCceeecccCchhhhhh--hhhhhhcccCCccccchhHHHHHhcccccccccccccccchhhhhhcC
Confidence 444556788888888999999999988863 212234558999999999874 678999999999999999998777
Q ss_pred CCCCCCchhhhhcHHHHHHHHhhcCCcccccC-CcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHH
Q 038019 714 ASSDKSLDMEKIYLLEWAWNLHENNQSFGLVD-PTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVV 781 (866)
Q Consensus 714 ~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d-~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~ 781 (866)
.|....-+.... .++.. .-.+ |.+.+ .......+-+++..|+-.+|++||+....+
T Consensus 213 pplfdlhpmr~l-------~LmTk----S~~qpp~lkD-k~kws~~fh~fvK~altknpKkRptaeklL 269 (829)
T KOG0576|consen 213 PPLFDLHPMRAL-------FLMTK----SGFQPPTLKD-KTKWSEFFHNFVKGALTKNPKKRPTAEKLL 269 (829)
T ss_pred CcccccchHHHH-------HHhhc----cCCCCCcccC-CccchHHHHHHHHHHhcCCCccCCChhhhe
Confidence 775432222211 11111 1222 33322 111222233344478899999999987643
|
|
| >KOG0607 consensus MAP kinase-interacting kinase and related serine/threonine protein kinases [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.77 E-value=1.1e-05 Score=82.71 Aligned_cols=101 Identities=16% Similarity=0.163 Sum_probs=60.0
Q ss_pred cCCCCccCceeee-----cCCCCchhHHHHHHHHHHHHHhcCCCCCCCchhhhh--------cHHHHHHHHhhcCCcccc
Q 038019 677 ANSYGYLAPEYAM-----RGHLTEKADVFSFGVVALEIISGRASSDKSLDMEKI--------YLLEWAWNLHENNQSFGL 743 (866)
Q Consensus 677 ~gt~gY~aPE~~~-----~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~~~~~--------~l~~~~~~~~~~~~~~~~ 743 (866)
+|+.-|||||+.. ...|+.++|.||+|||||-|++|-.||...-+.+.. .-.+...+.+.+|.. +.
T Consensus 247 vGSAEfMAPEVVd~fv~qA~~YDKrCDlwSLGvIlYImLsGYpPFvG~Cg~dCGWdrGe~Cr~CQ~~LFesIQEGkY-eF 325 (463)
T KOG0607|consen 247 VGSAEFMAPEVVDVFVDQATFYDKRCDLWSLGVILYIMLSGYPPFVGHCGADCGWDRGEVCRVCQNKLFESIQEGKY-EF 325 (463)
T ss_pred ccchhhcchhHHhhhccccccccccccHHHHHHHHHHHHhCCCCccCccCCcCCccCCCccHHHHHHHHHHHhccCC-cC
Confidence 5778899999753 346889999999999999999999999765432210 001111122333322 11
Q ss_pred cCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 744 VDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 744 ~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
-|.... ...++..+++. .-+..++.+|-+..+|+.
T Consensus 326 PdkdWa-hIS~eakdlis---nLlvrda~~rlsa~~vln 360 (463)
T KOG0607|consen 326 PDKDWA-HISSEAKDLIS---NLLVRDAKQRLSAAQVLN 360 (463)
T ss_pred ChhhhH-HhhHHHHHHHH---HHHhccHHhhhhhhhccC
Confidence 111100 01223334443 233488999999888876
|
|
| >smart00221 STYKc Protein kinase; unclassified specificity | Back alignment and domain information |
|---|
Probab=97.73 E-value=9.3e-06 Score=83.31 Aligned_cols=74 Identities=23% Similarity=0.239 Sum_probs=56.0
Q ss_pred cccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceee-ecCCCCchhHHHHHHHHHHHHHhcCCCCCC
Q 038019 644 NIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYA-MRGHLTEKADVFSFGVVALEIISGRASSDK 718 (866)
Q Consensus 644 ~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~-~~~~~t~ksDVySfGvvLlEl~tg~~p~~~ 718 (866)
+++...+...++.|||.+..+.... +...+...++..|++||.. ....++.++|||+||++++||++|+.|++.
T Consensus 128 ni~v~~~~~~~l~d~g~~~~~~~~~-~~~~~~~~~~~~~~~pe~~~~~~~~~~~~Dv~~lG~~~~~l~~g~~pf~~ 202 (225)
T smart00221 128 NILLGMDGLVKLADFGLARFIHRDL-AALLKTVKGTPFYLAPEVLLGGKGYGEAVDIWSLGVILYELLWGPEPFSG 202 (225)
T ss_pred HEEEcCCCCEEEeeCceeeEecCcc-cccccceeccCCcCCHhHhcCCCCCCchhhHHHHHHHHHHHHHCCCCccc
Confidence 4444444566788898888776543 1122334577899999998 667788899999999999999999999964
|
Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase. |
| >KOG0670 consensus U4/U6-associated splicing factor PRP4 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.70 E-value=1.5e-05 Score=86.71 Aligned_cols=73 Identities=22% Similarity=0.165 Sum_probs=56.5
Q ss_pred cccCHH-HHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCCc
Q 038019 644 NIFGYA-ELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSL 720 (866)
Q Consensus 644 ~~~~~~-~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~ 720 (866)
|++..+ ....+++|||.+..+++.... -|. -+.-|.|||.+.+-.|+..-|+||.||.||||.||+.-|....
T Consensus 566 NiLVNE~k~iLKLCDfGSA~~~~eneit-PYL---VSRFYRaPEIiLG~~yd~~iD~WSvgctLYElYtGkIlFpG~T 639 (752)
T KOG0670|consen 566 NILVNESKNILKLCDFGSASFASENEIT-PYL---VSRFYRAPEIILGLPYDYPIDTWSVGCTLYELYTGKILFPGRT 639 (752)
T ss_pred ceEeccCcceeeeccCcccccccccccc-HHH---HHHhccCcceeecCcccCCccceeeceeeEEeeccceecCCCC
Confidence 544432 345689999999888876532 122 2457999999999999999999999999999999998776543
|
|
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
Probab=97.60 E-value=5.6e-05 Score=55.39 Aligned_cols=35 Identities=37% Similarity=0.484 Sum_probs=14.0
Q ss_pred CCEEEccCCCCCCCCCccccCCCCcCEEeccCCcCC
Q 038019 91 LTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFS 126 (866)
Q Consensus 91 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 126 (866)
|++|+|++|+|+ .+|..+++|++|++|+|++|+|+
T Consensus 3 L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 3 LEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp -SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred ceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 444444444444 23333444444444444444443
|
... |
| >KOG0665 consensus Jun-N-terminal kinase (JNK) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00011 Score=75.76 Aligned_cols=72 Identities=21% Similarity=0.242 Sum_probs=56.9
Q ss_pred CcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCC
Q 038019 643 PNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSD 717 (866)
Q Consensus 643 ~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~ 717 (866)
.|+....+-..++.|||.++.=+.. | .-.--+.|.-|.|||.+.+..+.+++||||.||++.||++|+.-|.
T Consensus 147 snivv~~~~~lKi~dfg~ar~e~~~-~--~mtpyVvtRyyrapevil~~~~ke~vdiwSvGci~gEli~~~Vlf~ 218 (369)
T KOG0665|consen 147 SNIVVNSDCTLKILDFGLARTEDTD-F--MMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGELILGTVLFP 218 (369)
T ss_pred ccceecchhheeeccchhhcccCcc-c--ccCchhheeeccCchheeccCCcccchhhhhhhHHHHHhhceEEec
Confidence 3667777778889999999865533 1 1122256788999999998889999999999999999999987655
|
|
| >PRK15386 type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00019 Score=78.57 Aligned_cols=56 Identities=25% Similarity=0.291 Sum_probs=27.6
Q ss_pred cCCCCcCEEeccCCcCCCCCCccccCCCCCCEeeccCCCCCCCCchhhcCCCCccEEEeecC
Q 038019 110 GNLSRLMFLSFSHNDFSGPVPRELGNLKELTVLAFGTNNFSGALPPELGNLAKLEQLYIDSC 171 (866)
Q Consensus 110 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n 171 (866)
..+.+|++|++++|.|+ .+|. + ..+|++|.++++.--..+|..+. .+|+.|++++|
T Consensus 49 ~~~~~l~~L~Is~c~L~-sLP~-L--P~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~C 104 (426)
T PRK15386 49 EEARASGRLYIKDCDIE-SLPV-L--PNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHC 104 (426)
T ss_pred HHhcCCCEEEeCCCCCc-ccCC-C--CCCCcEEEccCCCCcccCCchhh--hhhhheEccCc
Confidence 34566777777777665 3341 1 12466666655322223343331 34455555444
|
|
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
Probab=97.58 E-value=6.3e-05 Score=55.11 Aligned_cols=38 Identities=34% Similarity=0.494 Sum_probs=30.3
Q ss_pred CCcCEEeccCCcCCCCCCccccCCCCCCEeeccCCCCCC
Q 038019 113 SRLMFLSFSHNDFSGPVPRELGNLKELTVLAFGTNNFSG 151 (866)
Q Consensus 113 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 151 (866)
++|++|+|++|+|+ .+|..|++|++|++|++++|+++.
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSB
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCC
Confidence 47889999999998 567778999999999999998873
|
... |
| >KOG0590 consensus Checkpoint kinase and related serine/threonine protein kinases [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.57 E-value=1.7e-05 Score=92.98 Aligned_cols=132 Identities=14% Similarity=0.103 Sum_probs=83.3
Q ss_pred cccCHHHHHHHhcCCccccccCCCCce--eEEEeecCCCCccCceeeecCCCCc-hhHHHHHHHHHHHHHhcCCCCCCCc
Q 038019 644 NIFGYAELRSATKDFNRSNKLGEGGYG--PVYKVTANSYGYLAPEYAMRGHLTE-KADVFSFGVVALEIISGRASSDKSL 720 (866)
Q Consensus 644 ~~~~~~~~~~~~~dF~~~~~lg~g~~g--~vy~~~~gt~gY~aPE~~~~~~~t~-ksDVySfGvvLlEl~tg~~p~~~~~ 720 (866)
|++.......++.|||.+.+.--+.-- ..-.|..|+-+|+|||......|.. -.||||-|||+..|++||.|+....
T Consensus 450 nll~~~~g~lki~Dfg~~~vf~~~~e~~~~~~~g~~gS~pY~apE~~~~~~ydpr~vDiwS~~ii~~~m~~~~~~Wk~a~ 529 (601)
T KOG0590|consen 450 NLLVTENGILKIIDFGAASVFRYPWEKNIHESSGIVGSDPYLAPEVLTGKEYDPRAVDVWSCGIIYICMILGRFPWKVAK 529 (601)
T ss_pred cEEEecCCceEEeecCcceeeccCcchhhhhhcCcccCCcCcCcccccccccCcchhhhhhccceEEEEecCCCcccccc
Confidence 444445557788899876654333322 4445778999999999999888875 5799999999999999999987544
Q ss_pred hhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 721 DMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 721 ~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
..+... . .....+ ...+... ..........+.-.+..+.++.+|.+|-||.+|++
T Consensus 530 ~~~~~~-~----~~~~~~-~~~~~~~-~~~~~~~lp~~~~~~~~~~l~~~P~~R~ti~~i~~ 584 (601)
T KOG0590|consen 530 KSDNSF-K----TNNYSD-QRNIFEG-PNRLLSLLPRETRIIIYRMLQLDPTKRITIEQILN 584 (601)
T ss_pred ccccch-h----hhcccc-ccccccC-hHHHHHhchhhHHHHHHHHccCChhheecHHHHhh
Confidence 332211 0 000000 0000000 00111122334445677888999999999999975
|
|
| >KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00015 Score=70.14 Aligned_cols=57 Identities=19% Similarity=0.236 Sum_probs=23.4
Q ss_pred cCEEeccCCcCCCCCCccccCCCCCCEeeccCCCCCCCCchhhcCCCCccEEEeecCCC
Q 038019 115 LMFLSFSHNDFSGPVPRELGNLKELTVLAFGTNNFSGALPPELGNLAKLEQLYIDSCGA 173 (866)
Q Consensus 115 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l 173 (866)
...+||++|.+.. -+.|..++.|.+|.|++|.|+.+-|.--.-+++|+.|.|.+|.+
T Consensus 44 ~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi 100 (233)
T KOG1644|consen 44 FDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSI 100 (233)
T ss_pred cceecccccchhh--cccCCCccccceEEecCCcceeeccchhhhccccceEEecCcch
Confidence 3444444444421 12233444444444444444433333333334444444444443
|
|
| >PRK15386 type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00024 Score=77.74 Aligned_cols=30 Identities=33% Similarity=0.454 Sum_probs=13.8
Q ss_pred CCCeEEccCCCCCCCCchhhcCCCCCCEEEccC
Q 038019 210 KLKSLRFQGNSFQGPIPSSLSKLASLESLQMSD 242 (866)
Q Consensus 210 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~ 242 (866)
+|++|++++|... .+|..+. .+|+.|+++.
T Consensus 157 SLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~ 186 (426)
T PRK15386 157 SLKTLSLTGCSNI-ILPEKLP--ESLQSITLHI 186 (426)
T ss_pred cccEEEecCCCcc-cCccccc--ccCcEEEecc
Confidence 4555555555543 1222222 3555555544
|
|
| >KOG0666 consensus Cyclin C-dependent kinase CDK8 [Transcription] | Back alignment and domain information |
|---|
Probab=97.53 E-value=3.8e-05 Score=78.56 Aligned_cols=74 Identities=20% Similarity=0.285 Sum_probs=55.4
Q ss_pred CcccCHHH----HHHHhcCCccccccCCCCceeEE--EeecCCCCccCceeeec-CCCCchhHHHHHHHHHHHHHhcCCC
Q 038019 643 PNIFGYAE----LRSATKDFNRSNKLGEGGYGPVY--KVTANSYGYLAPEYAMR-GHLTEKADVFSFGVVALEIISGRAS 715 (866)
Q Consensus 643 ~~~~~~~~----~~~~~~dF~~~~~lg~g~~g~vy--~~~~gt~gY~aPE~~~~-~~~t~ksDVySfGvvLlEl~tg~~p 715 (866)
.||+...+ .+.++.|||+++++..- .-..| .+++-|+-|.|||.+.+ ..||...|||+.||+..||+|-++-
T Consensus 161 aNIlvmgdgperG~VKIaDlGlaR~~~~p-lkpl~s~d~VVVTiWYRAPELLLGa~hYT~AiDvWAiGCIfaElLtl~Pl 239 (438)
T KOG0666|consen 161 ANILVMGDGPERGRVKIADLGLARLFNNP-LKPLASLDPVVVTIWYRAPELLLGARHYTKAIDVWAIGCIFAELLTLEPL 239 (438)
T ss_pred ceEEEeccCCccCeeEeecccHHHHhhcc-ccccccCCceEEEEEecChHHhcccccccchhhhHHHHHHHHHHHccCcc
Confidence 46665555 77889999999887531 11111 23467899999998875 6899999999999999999997765
Q ss_pred CC
Q 038019 716 SD 717 (866)
Q Consensus 716 ~~ 717 (866)
|.
T Consensus 240 F~ 241 (438)
T KOG0666|consen 240 FK 241 (438)
T ss_pred cc
Confidence 54
|
|
| >KOG1345 consensus Serine/threonine kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.51 E-value=3.8e-05 Score=77.16 Aligned_cols=126 Identities=21% Similarity=0.294 Sum_probs=79.3
Q ss_pred cCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecC-----CCCchhHHHHHHHHHHHHHhcCCCCCCCc
Q 038019 646 FGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRG-----HLTEKADVFSFGVVALEIISGRASSDKSL 720 (866)
Q Consensus 646 ~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~-----~~t~ksDVySfGvvLlEl~tg~~p~~~~~ 720 (866)
|.-+.-+.++.|||+....|. +| +-..-+..|-+||..... +....+|||.||||++-++||+.|+....
T Consensus 155 f~~df~rvKlcDFG~t~k~g~----tV-~~~~~~~~y~~pe~~~~~~ne~~~~~ps~D~WqfGIi~f~cltG~~PWQka~ 229 (378)
T KOG1345|consen 155 FDADFYRVKLCDFGLTRKVGT----TV-KYLEYVNNYHAPELCDTVVNEKLVVNPSTDIWQFGIIFFYCLTGKFPWQKAS 229 (378)
T ss_pred ecCCccEEEeeecccccccCc----ee-hhhhhhcccCCcHHHhhccccceEecccccchheeeeeeeeecCCCcchhhh
Confidence 333445778999999998763 22 223355679999866432 45678999999999999999999997433
Q ss_pred hhhhhcHHHHHHHHhhcCCcccccCCcc-cccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHh
Q 038019 721 DMEKIYLLEWAWNLHENNQSFGLVDPTL-TEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLA 785 (866)
Q Consensus 721 ~~~~~~l~~~~~~~~~~~~~~~~~d~~l-~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~ 785 (866)
- .+-.-|-|..+..+....+ |+. ..+. +.+.++++ +-+..++++|-...++.++-.
T Consensus 230 ~---~d~~Y~~~~~w~~rk~~~~--P~~F~~fs-~~a~r~Fk---k~lt~~~~drcki~~~kk~rk 286 (378)
T KOG1345|consen 230 I---MDKPYWEWEQWLKRKNPAL--PKKFNPFS-EKALRLFK---KSLTPRFKDRCKIWTAKKMRK 286 (378)
T ss_pred c---cCchHHHHHHHhcccCccC--chhhcccC-HHHHHHHH---HhcCCcccccchhHHHHHHHH
Confidence 2 2233444455554433211 221 1122 33444444 667889999976677666554
|
|
| >KOG0664 consensus Nemo-like MAPK-related serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.46 E-value=2.5e-05 Score=78.15 Aligned_cols=91 Identities=16% Similarity=0.149 Sum_probs=63.5
Q ss_pred hccCCCCCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeec-CCCCchhHHHHHHHHHHHHHhcCC
Q 038019 636 LVGIGSKPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMR-GHLTEKADVFSFGVVALEIISGRA 714 (866)
Q Consensus 636 ~~~~~~~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~-~~~t~ksDVySfGvvLlEl~tg~~ 714 (866)
+++..+..|.+....-..++.|||+++.-....--.. ...+-|-.|.|||.+++ .+|+...||||.|+++.|++..|-
T Consensus 178 LHRDIKPGNLLVNSNCvLKICDFGLARvee~d~~~hM-TqEVVTQYYRAPEiLMGaRhYs~AvDiWSVGCIFaELLgRrI 256 (449)
T KOG0664|consen 178 LHRDIKPGNLLVNSNCILKICDFGLARTWDQRDRLNM-THEVVTQYYRAPELLMGARRYTGAVDIWSVGCIFAELLQRKI 256 (449)
T ss_pred hhccCCCccEEeccCceEEecccccccccchhhhhhh-HHHHHHHHhccHHHhhcchhhcCccceehhhHHHHHHHhhhh
Confidence 3333344466666777788999999987543322111 11245678999999885 689999999999999999998887
Q ss_pred CCCCCchhhhhcH
Q 038019 715 SSDKSLDMEKIYL 727 (866)
Q Consensus 715 p~~~~~~~~~~~l 727 (866)
-|....+-+..++
T Consensus 257 LFQAq~PiqQL~l 269 (449)
T KOG0664|consen 257 LFQAAGPIEQLQM 269 (449)
T ss_pred hhhccChHHHHHH
Confidence 7766555444333
|
|
| >KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00024 Score=68.80 Aligned_cols=104 Identities=20% Similarity=0.236 Sum_probs=59.8
Q ss_pred cCEEeccCCcCCCCCCcccc-CCCCCCEeeccCCCCCCCCchhhcCCCCccEEEeecCCCCCCChhhhhcCcCCCEEEec
Q 038019 115 LMFLSFSHNDFSGPVPRELG-NLKELTVLAFGTNNFSGALPPELGNLAKLEQLYIDSCGAGGEIPSTFAKLRNMQTLWAS 193 (866)
Q Consensus 115 L~~L~Ls~N~l~~~~p~~l~-~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~ 193 (866)
=+.++|.+.++..+ ..++ -+.+...+||++|.+... ..|..++.|.+|.|.+|+|+..-|.--.-+++|+.|.|.
T Consensus 21 e~e~~LR~lkip~i--enlg~~~d~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~Lt 96 (233)
T KOG1644|consen 21 ERELDLRGLKIPVI--ENLGATLDQFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILT 96 (233)
T ss_pred ccccccccccccch--hhccccccccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEec
Confidence 45566665555311 1122 234677888888887532 345566777777777777776666555556667777777
Q ss_pred CCCCCCCC-cccccCCCCCCeEEccCCCCC
Q 038019 194 DNPFTGKI-PDFIGNWTKLKSLRFQGNSFQ 222 (866)
Q Consensus 194 ~N~l~~~~-p~~l~~l~~L~~L~L~~N~l~ 222 (866)
+|.|.... -+-+..+++|++|.+-+|..+
T Consensus 97 nNsi~~l~dl~pLa~~p~L~~Ltll~Npv~ 126 (233)
T KOG1644|consen 97 NNSIQELGDLDPLASCPKLEYLTLLGNPVE 126 (233)
T ss_pred CcchhhhhhcchhccCCccceeeecCCchh
Confidence 66654210 122344556666666666554
|
|
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.33 E-value=8.1e-05 Score=88.29 Aligned_cols=149 Identities=20% Similarity=0.220 Sum_probs=88.1
Q ss_pred CCcCEEeccCCcCC-CCCCcccc-CCCCCCEeeccCCCCCCC-CchhhcCCCCccEEEeecCCCCCCChhhhhcCcCCCE
Q 038019 113 SRLMFLSFSHNDFS-GPVPRELG-NLKELTVLAFGTNNFSGA-LPPELGNLAKLEQLYIDSCGAGGEIPSTFAKLRNMQT 189 (866)
Q Consensus 113 ~~L~~L~Ls~N~l~-~~~p~~l~-~l~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 189 (866)
.+|++||+++...- ..-|..++ -||+|+.|.+++-.+... .-.-..++++|..||+++.+++.. ..++.|++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence 56777777775432 22233444 367788877776555322 223345677888888887777654 56777788888
Q ss_pred EEecCCCCCC-CCcccccCCCCCCeEEccCCCCCCCC--c----hhhcCCCCCCEEEccCccCCCCCch-hhhcCCCCCc
Q 038019 190 LWASDNPFTG-KIPDFIGNWTKLKSLRFQGNSFQGPI--P----SSLSKLASLESLQMSDIYNVSSSLD-FVMSLKNLTD 261 (866)
Q Consensus 190 L~L~~N~l~~-~~p~~l~~l~~L~~L~L~~N~l~~~~--p----~~~~~l~~L~~L~l~~n~~~~~~~~-~~~~l~~L~~ 261 (866)
|.+.+=.+.. ..-..+.+|++|+.||+|........ . +.-..|++|+.||.+...+...... .+..-++|+.
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~ 279 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQ 279 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhh
Confidence 7777665553 22234567888888888876554321 1 1223478888888886555432222 2233444444
Q ss_pred ee
Q 038019 262 LS 263 (866)
Q Consensus 262 L~ 263 (866)
+.
T Consensus 280 i~ 281 (699)
T KOG3665|consen 280 IA 281 (699)
T ss_pred hh
Confidence 43
|
|
| >KOG0606 consensus Microtubule-associated serine/threonine kinase and related proteins [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.00016 Score=85.51 Aligned_cols=79 Identities=19% Similarity=0.160 Sum_probs=63.4
Q ss_pred cccCHHHHHHHhcCCccccccCCCCceeEE-------------EeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHH
Q 038019 644 NIFGYAELRSATKDFNRSNKLGEGGYGPVY-------------KVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEII 710 (866)
Q Consensus 644 ~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy-------------~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~ 710 (866)
+.+...-...|..|||+.+++..---+.+| |++.||+-|+|||++....|..-+|.|++|++++|.+
T Consensus 173 nllIT~mGhiKlTDfgLsk~GLms~atnl~eg~I~k~t~Ef~dKqvcgTPeyiaPeVilrqgygkpvdwwamGiIlyeFL 252 (1205)
T KOG0606|consen 173 NLLITSMGHIKLTDFGLSKKGLMSLATNLKEGHIEKDTHEFQDKQVCGTPEYIAPEVILRQGYGKPVDWWAMGIILYEFL 252 (1205)
T ss_pred cceeeecccccccchhhhhhhhhhccchhhhcchHHHHHHhhhccccCCccccChhhhhhhccCCCccHHHHHHHHHHHh
Confidence 445555566788899988877654434444 3458999999999999999999999999999999999
Q ss_pred hcCCCCCCCchh
Q 038019 711 SGRASSDKSLDM 722 (866)
Q Consensus 711 tg~~p~~~~~~~ 722 (866)
-|+.||+...++
T Consensus 253 VgcvpffGdtpe 264 (1205)
T KOG0606|consen 253 VGCVPFFGDTPE 264 (1205)
T ss_pred eeeeeccCCCHH
Confidence 999999876443
|
|
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.00021 Score=84.84 Aligned_cols=137 Identities=20% Similarity=0.206 Sum_probs=62.4
Q ss_pred CCCCEeeccCCCCC-CCCchhhc-CCCCccEEEeecCCCCC-CChhhhhcCcCCCEEEecCCCCCCCCcccccCCCCCCe
Q 038019 137 KELTVLAFGTNNFS-GALPPELG-NLAKLEQLYIDSCGAGG-EIPSTFAKLRNMQTLWASDNPFTGKIPDFIGNWTKLKS 213 (866)
Q Consensus 137 ~~L~~L~Ls~N~l~-~~~p~~l~-~l~~L~~L~L~~n~l~~-~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~ 213 (866)
.+|++||+++...- ..-|..++ .||+|+.|.+.+=.+.. .+-.-..+++||..||+++..++.. ..+++|++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence 45666666654432 11222233 24566666555433322 1222233455555555555555422 34445555555
Q ss_pred EEccCCCCCCCCchhhcCCCCCCEEEccCccCCCCCchhhhcCCCCCceeccCcccccCC------CcccCCCCCcCEEe
Q 038019 214 LRFQGNSFQGPIPSSLSKLASLESLQMSDIYNVSSSLDFVMSLKNLTDLSLRNALITGTI------PFGIGELQMLQILD 287 (866)
Q Consensus 214 L~L~~N~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~------p~~~~~l~~L~~L~ 287 (866)
|.+.+-.+.. ......+.++++|+.||+|........ -+.-..+++|+.||
T Consensus 200 L~mrnLe~e~-----------------------~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLD 256 (699)
T KOG3665|consen 200 LSMRNLEFES-----------------------YQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLD 256 (699)
T ss_pred HhccCCCCCc-----------------------hhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEe
Confidence 5554444432 122233444444445554443322111 11223366777777
Q ss_pred eecCcCcccCC
Q 038019 288 LSFNNLTGQIP 298 (866)
Q Consensus 288 Ls~N~l~~~~p 298 (866)
.|++.+.+.+-
T Consensus 257 cSgTdi~~~~l 267 (699)
T KOG3665|consen 257 CSGTDINEEIL 267 (699)
T ss_pred cCCcchhHHHH
Confidence 77777765443
|
|
| >PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape [] | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.00062 Score=49.68 Aligned_cols=38 Identities=26% Similarity=0.616 Sum_probs=27.4
Q ss_pred CHHHHHHHHHHHHhCCC-C--CCCCCcCC--CCCCCCCCCCCcccCCCCCCCCCCeecc
Q 038019 3 DKHAVRALNSILQQWDA-P--AVPLWNIS--GNPCSGSALNATDSEFESPNNNPAIVCN 56 (866)
Q Consensus 3 ~~~~~~~l~~~~~~~~~-~--~~~~w~~~--~~~C~~~~~~~~~~~~~~~~~~~~v~C~ 56 (866)
.++|++||++||+++.. + .+.+|+.+ .+||+ | .||+|+
T Consensus 1 ~~~d~~aLl~~k~~l~~~~~~~l~~W~~~~~~~~C~----W------------~GV~Cd 43 (43)
T PF08263_consen 1 PNQDRQALLAFKKSLNNDPSGVLSSWNPSSDSDPCS----W------------SGVTCD 43 (43)
T ss_dssp -HHHHHHHHHHHHCTT-SC-CCCTT--TT--S-CCC----S------------TTEEE-
T ss_pred CcHHHHHHHHHHHhcccccCcccccCCCcCCCCCee----e------------ccEEeC
Confidence 36899999999999974 3 57999987 79994 5 799995
|
LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A. |
| >PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0011 Score=61.49 Aligned_cols=105 Identities=17% Similarity=0.192 Sum_probs=33.1
Q ss_pred ccCCCCcCEEeccCCcCCCCCCccccCCCCCCEeeccCCCCCCCCchhhcCCCCccEEEeecCCCCCCChhhhhcCcCCC
Q 038019 109 IGNLSRLMFLSFSHNDFSGPVPRELGNLKELTVLAFGTNNFSGALPPELGNLAKLEQLYIDSCGAGGEIPSTFAKLRNMQ 188 (866)
Q Consensus 109 l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~ 188 (866)
|.++++|+.+.+.. .+.......|.++++|+.+.+..+ +.......|.++++|+.+.+.+ .+.......|..+++|+
T Consensus 8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~ 84 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLK 84 (129)
T ss_dssp TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTEC
T ss_pred HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccccc
Confidence 33444444444432 233222333444444444444332 3322223344444444444432 22222223344444444
Q ss_pred EEEecCCCCCCCCcccccCCCCCCeEEccC
Q 038019 189 TLWASDNPFTGKIPDFIGNWTKLKSLRFQG 218 (866)
Q Consensus 189 ~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~ 218 (866)
.+.+..+ +...-...|.+. +|+.+.+..
T Consensus 85 ~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 85 NIDIPSN-ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp EEEETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred ccccCcc-ccEEchhhhcCC-CceEEEECC
Confidence 4444433 222222333343 455554443
|
|
| >KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.00033 Score=70.84 Aligned_cols=64 Identities=20% Similarity=0.209 Sum_probs=24.8
Q ss_pred CCCCCCEeeccCC--CCCCCCchhhcCCCCccEEEeecCCCCCC-ChhhhhcCcCCCEEEecCCCCC
Q 038019 135 NLKELTVLAFGTN--NFSGALPPELGNLAKLEQLYIDSCGAGGE-IPSTFAKLRNMQTLWASDNPFT 198 (866)
Q Consensus 135 ~l~~L~~L~Ls~N--~l~~~~p~~l~~l~~L~~L~L~~n~l~~~-~p~~~~~l~~L~~L~L~~N~l~ 198 (866)
.|++|+.|.++.| ++++.++.-...+++|++|+|++|++... --..+..+.+|..|++.+|..+
T Consensus 63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVT 129 (260)
T ss_pred CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCcc
Confidence 3344444444444 33333322223334444444444444310 0011233444455555544433
|
|
| >PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0012 Score=61.29 Aligned_cols=122 Identities=18% Similarity=0.182 Sum_probs=58.5
Q ss_pred ccCCCCCCCEEEccCCCCCCCCCccccCCCCcCEEeccCCcCCCCCCccccCCCCCCEeeccCCCCCCCCchhhcCCCCc
Q 038019 84 ELVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKELTVLAFGTNNFSGALPPELGNLAKL 163 (866)
Q Consensus 84 ~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L 163 (866)
.|.++++|+.+.+.. .+..+....|.++++|+.+.+..+ +...-...|.++++|+.+.+.+ .+.......|..+++|
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l 83 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL 83 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence 466667777777764 455455556777777777777764 5544455677777777777754 4433334566667778
Q ss_pred cEEEeecCCCCCCChhhhhcCcCCCEEEecCCCCCCCCcccccCCCCC
Q 038019 164 EQLYIDSCGAGGEIPSTFAKLRNMQTLWASDNPFTGKIPDFIGNWTKL 211 (866)
Q Consensus 164 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L 211 (866)
+.+.+..+ +.......|.++ +|+.+.+.. .+.......|.++++|
T Consensus 84 ~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 84 KNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp CEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred cccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence 87777654 444444556666 777777765 3333344555555554
|
|
| >PF11721 Malectin: Di-glucose binding within endoplasmic reticulum; InterPro: IPR021720 Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0012 Score=64.91 Aligned_cols=111 Identities=45% Similarity=0.732 Sum_probs=69.5
Q ss_pred cCCCchhhhhhcccCCCCcceeeeeeeCCCceEEEeeeeecCCCCCcccccccCceEEEEEEcCeeeeeccccchhhCCC
Q 038019 453 TGTRTPKLYQTSRISAGSLRYYGLGLVNGPYNVSLLFAETNFPDPSTERWESRGRRVFDIYVQGTLRWKDFDISKEAGGP 532 (866)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 532 (866)
.+..++.++++.|....++++..-+...+.|.+.|.|+|.-+. ....+...|+|+|++++.|..-+++|++.++.|+.
T Consensus 51 ~~t~d~~Lyqt~R~g~~~f~Y~ip~~~~G~Y~V~L~FaE~~~~--~~~~~~~~G~RvFdV~v~g~~vl~~~Di~~~~G~~ 128 (174)
T PF11721_consen 51 PGTTDDPLYQTERYGPSSFSYDIPVVPNGTYTVRLHFAELYFG--ASGGASGPGQRVFDVYVNGETVLKNFDIYAEAGGF 128 (174)
T ss_dssp S-HHHHHTTT-----SSSEEEEEE--S-EEEEEEEEEE-SSS----------SSSS-EEEEETTEEEEEEE-HHHHHSSS
T ss_pred cCCCchhhhHhhcCCCCceEEEEecCCCcEEEEEEEecccccc--ccccccCCCceEEEEEecceEEEeccCHHHHcCCC
Confidence 3344567788888765566654444668889999999998763 13334557899999999999999999999999987
Q ss_pred CceEEEEE-EEEEccCcceeEeeecCcCccccCC
Q 038019 533 NRAIIKNF-SATVSENHLEIHLFWAGKGTCCIPK 565 (866)
Q Consensus 533 ~~~~~~~~-~~~~~~n~l~~~~~~~~~~~~~~~~ 565 (866)
.+++.+.| .+.+.++.+.+.+.+.+++.|+++.
T Consensus 129 ~~~~~~~~~~v~v~dg~L~i~f~~~~~~~~~i~~ 162 (174)
T PF11721_consen 129 NKAAVRRFFNVTVTDGTLNIQFVWAGKGTLCIPF 162 (174)
T ss_dssp S---EEEEEEEEEETTEEETTEEEE--SEEEEEE
T ss_pred ceEEEEEEEEEEEeCCcEEEEEEecCCCcEEeec
Confidence 65555555 7888888898888888888888764
|
It carries a signal peptide from residues 1-26, a C-terminal transmembrane helix from residues 255-274, and a highly conserved central part of approximately 190 residues followed by an acidic, glutamate-rich region. Carbohydrate-binding is mediated by the four aromatic residues, Y67, Y89, Y116, and F117 and the aspartate at D186. NMR-based ligand-screening studies has shown binding of the protein to maltose and related oligosaccharides, on the basis of which the protein has been designated "malectin", and its endogenous ligand is found to be Glc2-high-mannose N-glycan [. This entry represents a malectin domain, and can also be found in probable receptor-like serine/threonine-protein kinases from plants [] and in proteins described as glycoside hydrolases. ; PDB: 2KR2_A 2JWP_A 2K46_A. |
| >KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.00057 Score=69.11 Aligned_cols=93 Identities=20% Similarity=0.186 Sum_probs=56.7
Q ss_pred CCcccCCCCCCCEEEccCCCCCCCCCccccCCCCcCEEeccCC--cCCCCCCccccCCCCCCEeeccCCCCCCC-Cchhh
Q 038019 81 IPEELVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHN--DFSGPVPRELGNLKELTVLAFGTNNFSGA-LPPEL 157 (866)
Q Consensus 81 ~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N--~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~-~p~~l 157 (866)
+..-...+..|+.|++.+..++.. ..|-.|++|++|.++.| ++++.++.....+++|++|+|++|++... --..+
T Consensus 35 ~~gl~d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl 112 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPL 112 (260)
T ss_pred cccccccccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchh
Confidence 444444455566666665555421 22445777888888888 56655555555668888888888877531 11234
Q ss_pred cCCCCccEEEeecCCCCC
Q 038019 158 GNLAKLEQLYIDSCGAGG 175 (866)
Q Consensus 158 ~~l~~L~~L~L~~n~l~~ 175 (866)
..+.+|..|++.+|..+.
T Consensus 113 ~~l~nL~~Ldl~n~~~~~ 130 (260)
T KOG2739|consen 113 KELENLKSLDLFNCSVTN 130 (260)
T ss_pred hhhcchhhhhcccCCccc
Confidence 556677788887776544
|
|
| >COG0515 SPS1 Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.0011 Score=71.67 Aligned_cols=135 Identities=16% Similarity=0.185 Sum_probs=83.9
Q ss_pred cccCHHHH-HHHhcCCccccccCCCCcee----EEEeecCCCCccCceeeec---CCCCchhHHHHHHHHHHHHHhcCCC
Q 038019 644 NIFGYAEL-RSATKDFNRSNKLGEGGYGP----VYKVTANSYGYLAPEYAMR---GHLTEKADVFSFGVVALEIISGRAS 715 (866)
Q Consensus 644 ~~~~~~~~-~~~~~dF~~~~~lg~g~~g~----vy~~~~gt~gY~aPE~~~~---~~~t~ksDVySfGvvLlEl~tg~~p 715 (866)
+++..... ..++.|||.++.+....... .+....||..|+|||.... ..++...|+||+|++++++++|+.|
T Consensus 131 nil~~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~t~~~~~pe~~~~~~~~~~~~~~D~~s~g~~~~~~~~~~~p 210 (384)
T COG0515 131 NILLDRDGRVVKLIDFGLAKLLPDPGSTSSIPALPSTSVGTPGYMAPEVLLGLSLAYASSSSDIWSLGITLYELLTGLPP 210 (384)
T ss_pred HeeecCCCCeEEEeccCcceecCCCCccccccccccccccccccCCHHHhcCCCCCCCCchHhHHHHHHHHHHHHhCCCC
Confidence 44444444 57889999988766544321 3466789999999999987 6899999999999999999999999
Q ss_pred CCCCchh-hhhcHHHHHHHHhhcCCcccccCCccc-ccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 038019 716 SDKSLDM-EKIYLLEWAWNLHENNQSFGLVDPTLT-EFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAM 783 (866)
Q Consensus 716 ~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~d~~l~-~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~ 783 (866)
+...... ......+.+...... ...+... .........+.++...|...+|..|.++.+....
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 275 (384)
T COG0515 211 FEGEKNSSATSQTLKIILELPTP-----SLASPLSPSNPELISKAASDLLKKLLAKDPKNRLSSSSDLSH 275 (384)
T ss_pred CCCCCccccHHHHHHHHHhcCCc-----ccccccCccccchhhHHHHHHHHHHHhcCchhcCCHHHHhhc
Confidence 6543321 011112211111100 0000110 0001112344556668888899999998877653
|
|
| >KOG0603 consensus Ribosomal protein S6 kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.00019 Score=80.69 Aligned_cols=68 Identities=28% Similarity=0.364 Sum_probs=57.5
Q ss_pred CcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCC
Q 038019 643 PNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDK 718 (866)
Q Consensus 643 ~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~ 718 (866)
-+++.+.+...+..|||+++.+-+..-+ .||+-|||||... .....+|.|||||+.+||+||-.|+..
T Consensus 126 enilld~~Ghi~~tdfglske~v~~~~~------cgt~eymApEI~~--gh~~a~D~ws~gvl~felltg~~pf~~ 193 (612)
T KOG0603|consen 126 ENVLLLLEGHIKLTDFGLSKEAVKEKIA------CGTYEYRAPEIIN--GHLSAADWWSFGVLAFELLTGTLPFGG 193 (612)
T ss_pred cceeecccCccccCCchhhhHhHhhhhc------ccchhhhhhHhhh--ccCCcccchhhhhhHHHHhhCCCCCch
Confidence 4678888888999999999887654322 7899999999997 456788999999999999999999875
|
|
| >KOG2123 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.81 E-value=5.8e-05 Score=76.16 Aligned_cols=84 Identities=21% Similarity=0.208 Sum_probs=47.3
Q ss_pred eeEEEEEEcccCcCCCCCcccCCCCCCCEEEccCCCCCCCCCccccCCCCcCEEeccCCcCCCCC-CccccCCCCCCEee
Q 038019 65 CHITKLRVYGLNKKGVIPEELVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPV-PRELGNLKELTVLA 143 (866)
Q Consensus 65 ~~v~~L~l~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~ 143 (866)
.++++|++.++.++.+- -..+++.|++|.||-|+|+..- .|..|++|++|+|..|.|...- -..+.++++|++|+
T Consensus 19 ~~vkKLNcwg~~L~DIs--ic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDIS--ICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HHhhhhcccCCCccHHH--HHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence 35666666666655321 1345667777777777776432 2566777777777777665211 12344555555555
Q ss_pred ccCCCCCCC
Q 038019 144 FGTNNFSGA 152 (866)
Q Consensus 144 Ls~N~l~~~ 152 (866)
|..|.-.|.
T Consensus 95 L~ENPCc~~ 103 (388)
T KOG2123|consen 95 LDENPCCGE 103 (388)
T ss_pred hccCCcccc
Confidence 555554443
|
|
| >KOG1152 consensus Signal transduction serine/threonine kinase with PAS/PAC sensor domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.00022 Score=78.84 Aligned_cols=78 Identities=15% Similarity=0.203 Sum_probs=62.2
Q ss_pred hccCCCCCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCC-chhHHHHHHHHHHHHHhcCC
Q 038019 636 LVGIGSKPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLT-EKADVFSFGVVALEIISGRA 714 (866)
Q Consensus 636 ~~~~~~~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t-~ksDVySfGvvLlEl~tg~~ 714 (866)
.++....-|+..+....+++-|||.+..+..|.|. |+ +||.+|.|||.+.+.+|- ..-|||++||+||-++....
T Consensus 692 vhrdikdenvivd~~g~~klidfgsaa~~ksgpfd-~f---~gtv~~aapevl~g~~y~gk~qdiwalgillytivyken 767 (772)
T KOG1152|consen 692 VHRDIKDENVIVDSNGFVKLIDFGSAAYTKSGPFD-VF---VGTVDYAAPEVLGGEKYLGKPQDIWALGILLYTIVYKEN 767 (772)
T ss_pred eecccccccEEEecCCeEEEeeccchhhhcCCCcc-ee---eeeccccchhhhCCCccCCCcchhhhhhheeeEEEeccC
Confidence 33334445677777777889999999999988883 33 578999999999887764 56799999999999998888
Q ss_pred CCC
Q 038019 715 SSD 717 (866)
Q Consensus 715 p~~ 717 (866)
|+.
T Consensus 768 pyy 770 (772)
T KOG1152|consen 768 PYY 770 (772)
T ss_pred CCc
Confidence 874
|
|
| >KOG0662 consensus Cyclin-dependent kinase CDK5 [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.0023 Score=60.57 Aligned_cols=73 Identities=15% Similarity=0.173 Sum_probs=57.5
Q ss_pred cccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecC-CCCchhHHHHHHHHHHHHHhcCCCCCC
Q 038019 644 NIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRG-HLTEKADVFSFGVVALEIISGRASSDK 718 (866)
Q Consensus 644 ~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~-~~t~ksDVySfGvvLlEl~tg~~p~~~ 718 (866)
|.+.....+.++.|||+++..|-- -..|.+.+-|.-|.+|.++-+. -|++..|.||-|+++.|+....+|.-+
T Consensus 131 nllin~ngelkladfglarafgip--vrcysaevvtlwyrppdvlfgakly~tsidmwsagcifaelanagrplfp 204 (292)
T KOG0662|consen 131 NLLINRNGELKLADFGLARAFGIP--VRCYSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFP 204 (292)
T ss_pred eEEeccCCcEEecccchhhhcCCc--eEeeeceeeeeeccCcceeeeeehhccchHhhhcchHHHHHhhcCCCCCC
Confidence 555566677789999999977643 2468888899999999988754 578899999999999999985555443
|
|
| >KOG2123 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.00014 Score=73.49 Aligned_cols=85 Identities=25% Similarity=0.196 Sum_probs=53.8
Q ss_pred CCCCCEEEccCCCCCCCCCccccCCCCcCEEeccCCcCCCCCCccccCCCCCCEeeccCCCCCCCC-chhhcCCCCccEE
Q 038019 88 LQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKELTVLAFGTNNFSGAL-PPELGNLAKLEQL 166 (866)
Q Consensus 88 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L 166 (866)
|.+.+.|++.++.|+++ ....+++.|+.|.|+-|+|+.. ..|..+++|++|+|..|.|...- -.-+.++++|+.|
T Consensus 18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 45567777888777643 2345777788888888877743 23667777777777777765321 1234556666666
Q ss_pred EeecCCCCCC
Q 038019 167 YIDSCGAGGE 176 (866)
Q Consensus 167 ~L~~n~l~~~ 176 (866)
+|..|...+.
T Consensus 94 WL~ENPCc~~ 103 (388)
T KOG2123|consen 94 WLDENPCCGE 103 (388)
T ss_pred hhccCCcccc
Confidence 6666655444
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.0031 Score=75.32 Aligned_cols=101 Identities=24% Similarity=0.331 Sum_probs=62.0
Q ss_pred ceeEEEeecCCCCccCceeeecC-----------CCCchhHHHHHHHHHHHHHh-cCCCCCCCchhhhhcHHHHHHHHhh
Q 038019 669 YGPVYKVTANSYGYLAPEYAMRG-----------HLTEKADVFSFGVVALEIIS-GRASSDKSLDMEKIYLLEWAWNLHE 736 (866)
Q Consensus 669 ~g~vy~~~~gt~gY~aPE~~~~~-----------~~t~ksDVySfGvvLlEl~t-g~~p~~~~~~~~~~~l~~~~~~~~~ 736 (866)
|+--+.....-..|+|||.+..+ .++.+.||||.|||+.||++ |+++|+. ..|..+ +
T Consensus 180 f~fFFDTSrRRtCYiAPERFv~~~~~~~~~q~~~~L~paMDIFS~GCViaELf~Eg~PlF~L------SQL~aY-----r 248 (1431)
T KOG1240|consen 180 FTFFFDTSRRRTCYIAPERFVSALGKTSVGQDAPLLTPAMDIFSAGCVIAELFLEGRPLFTL------SQLLAY-----R 248 (1431)
T ss_pred ceEEEecCCceeeecChHhhhccccccccCCcccccChhhhhhhhhHHHHHHHhcCCCcccH------HHHHhH-----h
Confidence 33333333334589999977541 37889999999999999998 7887762 122222 1
Q ss_pred cCCcccccCCcc--cccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhc
Q 038019 737 NNQSFGLVDPTL--TEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLAG 786 (866)
Q Consensus 737 ~~~~~~~~d~~l--~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~~ 786 (866)
.+. ..|+.. ...... .+-.+.+.+++.||++|-++.+.++.-.|
T Consensus 249 ~~~---~~~~e~~Le~Ied~---~~Rnlil~Mi~rdPs~RlSAedyL~~yrG 294 (1431)
T KOG1240|consen 249 SGN---ADDPEQLLEKIEDV---SLRNLILSMIQRDPSKRLSAEDYLQKYRG 294 (1431)
T ss_pred ccC---ccCHHHHHHhCcCc---cHHHHHHHHHccCchhccCHHHHHHhhhc
Confidence 110 111111 111111 23345667889999999999999987554
|
|
| >PF14531 Kinase-like: Kinase-like; PDB: 3DZO_A 2W1Z_A 3BYV_A 3Q5Z_A 3Q60_A | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.0013 Score=69.33 Aligned_cols=74 Identities=18% Similarity=0.222 Sum_probs=48.1
Q ss_pred CCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeec--------CCCCchhHHHHHHHHHHHHHhcC
Q 038019 642 KPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMR--------GHLTEKADVFSFGVVALEIISGR 713 (866)
Q Consensus 642 ~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~--------~~~t~ksDVySfGvvLlEl~tg~ 713 (866)
..|.|..++....+.||+.....| +.|.....+.+|.+||.... -.+|.+.|.|++|+++|.|.||+
T Consensus 173 ~~nfll~~~G~v~Lg~F~~~~r~g-----~~~~~~~~~~~~~PPe~~~~~~~~~~~~~~~t~~~DaW~LG~~ly~lWC~~ 247 (288)
T PF14531_consen 173 PENFLLDQDGGVFLGDFSSLVRAG-----TRYRCSEFPVAFTPPELESCAGQFGQNNAPYTFATDAWQLGITLYSLWCGR 247 (288)
T ss_dssp GGGEEE-TTS-EEE--GGGEEETT-----EEEEGGGS-TTTS-HHHHHHHTSCHHSEEEE-HHHHHHHHHHHHHHHHHSS
T ss_pred eeeEEEcCCCCEEEcChHHHeecC-----ceeeccCCCcccCChhhhhhhcccCcccceeeeccCHHHHHHHHHHHHHcc
Confidence 346677777777788886554433 33333456678999997654 25899999999999999999999
Q ss_pred CCCCCCc
Q 038019 714 ASSDKSL 720 (866)
Q Consensus 714 ~p~~~~~ 720 (866)
-|++...
T Consensus 248 lPf~~~~ 254 (288)
T PF14531_consen 248 LPFGLSS 254 (288)
T ss_dssp -STCCCG
T ss_pred CCCCCCC
Confidence 9998543
|
|
| >KOG1167 consensus Serine/threonine protein kinase of the CDC7 subfamily involved in DNA synthesis, repair and recombination [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.001 Score=71.30 Aligned_cols=44 Identities=32% Similarity=0.409 Sum_probs=38.9
Q ss_pred ecCCCCccCceeee-cCCCCchhHHHHHHHHHHHHHhcCCCCCCC
Q 038019 676 TANSYGYLAPEYAM-RGHLTEKADVFSFGVVALEIISGRASSDKS 719 (866)
Q Consensus 676 ~~gt~gY~aPE~~~-~~~~t~ksDVySfGvvLlEl~tg~~p~~~~ 719 (866)
.+||+||.|||++. .+.-|.+.||||-||+++-+++++.||-..
T Consensus 237 rAGT~GfRaPEvL~k~~~QttaiDiws~GVI~Lslls~~~PFf~a 281 (418)
T KOG1167|consen 237 RAGTPGFRAPEVLFRCPRQTTAIDIWSAGVILLSLLSRRYPFFKA 281 (418)
T ss_pred cCCCCCCCchHHHhhccCcCCccceeeccceeehhhccccccccC
Confidence 48999999999875 567789999999999999999999998643
|
|
| >KOG0668 consensus Casein kinase II, alpha subunit [Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.016 Score=57.26 Aligned_cols=74 Identities=19% Similarity=0.208 Sum_probs=56.0
Q ss_pred CcccCHHHH-HHHhcCCccccccCCCCceeEEEeecCCCCccCceeee-cCCCCchhHHHHHHHHHHHHHhcCCCCCCC
Q 038019 643 PNIFGYAEL-RSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAM-RGHLTEKADVFSFGVVALEIISGRASSDKS 719 (866)
Q Consensus 643 ~~~~~~~~~-~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~-~~~~t~ksDVySfGvvLlEl~tg~~p~~~~ 719 (866)
-|++.+.+. +..+-|+|++..--.| .-|-..+.+.-|--||.+. ...++..-|+|||||+|.+|+..|.||-..
T Consensus 161 hNvmIdh~~rkLrlIDWGLAEFYHp~---~eYnVRVASRyfKGPELLVdy~~YDYSLD~WS~GcmlA~miFrkepFFhG 236 (338)
T KOG0668|consen 161 HNVMIDHELRKLRLIDWGLAEFYHPG---KEYNVRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHG 236 (338)
T ss_pred ceeeechhhceeeeeecchHhhcCCC---ceeeeeeehhhcCCchheeechhccccHHHHHHHHHHHHHHhccCcccCC
Confidence 356655543 3457799998876544 4466667777888999876 456788899999999999999999998643
|
|
| >KOG0601 consensus Cyclin-dependent kinase WEE1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=95.41 E-value=0.0095 Score=67.28 Aligned_cols=78 Identities=31% Similarity=0.425 Sum_probs=64.2
Q ss_pred CCCCCcccCHHH-HHHHhcCCccccccCCCCceeEEEee---cCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCC
Q 038019 639 IGSKPNIFGYAE-LRSATKDFNRSNKLGEGGYGPVYKVT---ANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRA 714 (866)
Q Consensus 639 ~~~~~~~~~~~~-~~~~~~dF~~~~~lg~g~~g~vy~~~---~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~ 714 (866)
.....++|...+ ...++.||++...||.+.|+.|++.. .|...|++||... +.++.++|+|++|.|.+|.+++..
T Consensus 247 ~~kp~~i~~~~~~~s~~~~df~~v~~i~~~~~~~~~~~~~r~~~~~~Y~~ke~~~-~l~~~~~di~sl~ev~l~~~l~~~ 325 (524)
T KOG0601|consen 247 DLKPANIFTTSDWTSCKLTDFGLVSKISDGNFSSVFKVSKRPEGDCIYAAKELLN-GLATFASDIFSLGEVILEAILGSH 325 (524)
T ss_pred ccchhheecccccceeecCCcceeEEccCCccccceeeeecCCCCceEeChhhhc-cccchHhhhcchhhhhHhhHhhcc
Confidence 334457788777 77889999999999999999988744 4667899999764 578899999999999999999876
Q ss_pred CCC
Q 038019 715 SSD 717 (866)
Q Consensus 715 p~~ 717 (866)
...
T Consensus 326 ~~~ 328 (524)
T KOG0601|consen 326 LPS 328 (524)
T ss_pred ccc
Confidence 543
|
|
| >KOG1187 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.20 E-value=0.014 Score=64.61 Aligned_cols=38 Identities=47% Similarity=0.809 Sum_probs=34.2
Q ss_pred CCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCC
Q 038019 642 KPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANS 679 (866)
Q Consensus 642 ~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt 679 (866)
....|++++++.||++|+.+++||+||||.||+|....
T Consensus 61 ~~~~fs~~el~~AT~~Fs~~~~ig~Ggfg~VYkG~l~~ 98 (361)
T KOG1187|consen 61 PLRSFSYDELRKATNNFSESNLIGEGGFGTVYKGVLSD 98 (361)
T ss_pred CcceeeHHHHHHHHhCCchhcceecCCCeEEEEEEECC
Confidence 34679999999999999999999999999999998544
|
|
| >KOG4341 consensus F-box protein containing LRR [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.14 E-value=0.0013 Score=70.40 Aligned_cols=264 Identities=16% Similarity=0.097 Sum_probs=134.6
Q ss_pred CCeeccccCCCCCeeeEEEEEEcccCcCCCCC--cccCCCCCCCEEEccCCC-CCCCCCccc-cCCCCcCEEeccCC-cC
Q 038019 51 PAIVCNCTFDNGATCHITKLRVYGLNKKGVIP--EELVTLQYLTVLKIDQNF-FTGPLPSFI-GNLSRLMFLSFSHN-DF 125 (866)
Q Consensus 51 ~~v~C~~~~~~~~~~~v~~L~l~~~~l~~~~p--~~l~~l~~L~~L~Ls~n~-l~~~~p~~l-~~l~~L~~L~Ls~N-~l 125 (866)
.+|.|+....-+ ..+++|++.++.-.+.-+ ..-.++++++.|++.++. ++...-.++ ..+++|++|+|..+ .+
T Consensus 126 g~VV~~~~~Rcg--g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~i 203 (483)
T KOG4341|consen 126 GGVVENMISRCG--GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSI 203 (483)
T ss_pred CcceehHhhhhc--cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchh
Confidence 456554322111 467888888876554322 334678889999888874 443322233 36788999999884 44
Q ss_pred CCCCCc-cccCCCCCCEeeccCCC-CCCC-CchhhcCCCCccEEEeecCCCCCCChhhhh----cCcCCCEEEecCC-CC
Q 038019 126 SGPVPR-ELGNLKELTVLAFGTNN-FSGA-LPPELGNLAKLEQLYIDSCGAGGEIPSTFA----KLRNMQTLWASDN-PF 197 (866)
Q Consensus 126 ~~~~p~-~l~~l~~L~~L~Ls~N~-l~~~-~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~----~l~~L~~L~L~~N-~l 197 (866)
+...-. -...+++|++|+++.+. +++. +-.-..++..|+.+.+.+|.-.+ -..|. .+.-+..+++..+ .+
T Consensus 204 T~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~--le~l~~~~~~~~~i~~lnl~~c~~l 281 (483)
T KOG4341|consen 204 TDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELE--LEALLKAAAYCLEILKLNLQHCNQL 281 (483)
T ss_pred HHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhccccccc--HHHHHHHhccChHhhccchhhhccc
Confidence 433323 23467888888888764 3331 12234455666666666543211 12222 2233445554444 23
Q ss_pred CCCCc-ccccCCCCCCeEEccCCCCCCCC--chhhcCCCCCCEEEccCccCC-CCCchh-hhcCCCCCceeccCcccc--
Q 038019 198 TGKIP-DFIGNWTKLKSLRFQGNSFQGPI--PSSLSKLASLESLQMSDIYNV-SSSLDF-VMSLKNLTDLSLRNALIT-- 270 (866)
Q Consensus 198 ~~~~p-~~l~~l~~L~~L~L~~N~l~~~~--p~~~~~l~~L~~L~l~~n~~~-~~~~~~-~~~l~~L~~L~L~~n~l~-- 270 (866)
+..-- ..-..+..|+.|..+++...+.. ..-..+..+|+.|-++.+... ...... -.+++.|+.+++..+...
T Consensus 282 TD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d 361 (483)
T KOG4341|consen 282 TDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITD 361 (483)
T ss_pred cchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehh
Confidence 32210 11124566777777766543221 122245677777777766532 222222 234566666666655432
Q ss_pred cCCCcccCCCCCcCEEeeecCcCcccC-----CcccCCCCCCcEEECcCCCCc
Q 038019 271 GTIPFGIGELQMLQILDLSFNNLTGQI-----PATLFNIDSLEYLFLGNNSLS 318 (866)
Q Consensus 271 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~-----p~~l~~l~~L~~L~L~~N~l~ 318 (866)
+.+..--.+++.|+.|.|+++.+-... ...-..+..|..|.|+++..+
T Consensus 362 ~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i 414 (483)
T KOG4341|consen 362 GTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLI 414 (483)
T ss_pred hhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCc
Confidence 112222234566666666655442111 111123445555566655544
|
|
| >KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.11 E-value=0.0036 Score=72.53 Aligned_cols=63 Identities=24% Similarity=0.295 Sum_probs=27.8
Q ss_pred CCCCccEEEeecCC-CCCCChhhhh-cCcCCCEEEecCCC-CCCC-CcccccCCCCCCeEEccCCCC
Q 038019 159 NLAKLEQLYIDSCG-AGGEIPSTFA-KLRNMQTLWASDNP-FTGK-IPDFIGNWTKLKSLRFQGNSF 221 (866)
Q Consensus 159 ~l~~L~~L~L~~n~-l~~~~p~~~~-~l~~L~~L~L~~N~-l~~~-~p~~l~~l~~L~~L~L~~N~l 221 (866)
.+.+|+.|+++.+. ++...-..+. .+++|+.|.+..+. ++.. +-.....+++|++|+|+.+..
T Consensus 241 ~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 241 ICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred hcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence 34555555555554 3322222222 24555555544444 3322 112223455566666665543
|
|
| >KOG1266 consensus Protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.99 E-value=0.028 Score=58.75 Aligned_cols=37 Identities=30% Similarity=0.462 Sum_probs=33.3
Q ss_pred CCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCC
Q 038019 678 NSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRA 714 (866)
Q Consensus 678 gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~ 714 (866)
+-+||-|||+....+.+..+|||+||+..+||.-+..
T Consensus 244 ~~~g~~a~~sg~~tn~~~a~dIy~fgmcAlemailEi 280 (458)
T KOG1266|consen 244 SLPGFSAPESGTTTNTTGASDIYKFGMCALEMAILEI 280 (458)
T ss_pred cCCccccCCcCcccccccchhhhhhhHHHHHHHHhee
Confidence 5579999999999999999999999999999988754
|
|
| >KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.49 E-value=0.0057 Score=70.85 Aligned_cols=111 Identities=17% Similarity=0.097 Sum_probs=58.4
Q ss_pred CCCCCEeeccCCCCCCC--CchhhcCCCCccEEEeecC-CCCCCC----hhhhhcCcCCCEEEecCCC-CCCCCccccc-
Q 038019 136 LKELTVLAFGTNNFSGA--LPPELGNLAKLEQLYIDSC-GAGGEI----PSTFAKLRNMQTLWASDNP-FTGKIPDFIG- 206 (866)
Q Consensus 136 l~~L~~L~Ls~N~l~~~--~p~~l~~l~~L~~L~L~~n-~l~~~~----p~~~~~l~~L~~L~L~~N~-l~~~~p~~l~- 206 (866)
++.|+.|.+..+.-... +-.....+++|+.|+++.+ ...... ......+++|+.|+++.+. ++...-..+.
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 56666666665533222 2234455667777777652 211111 1233455677777777766 4433323333
Q ss_pred CCCCCCeEEccCCC-CCCC-CchhhcCCCCCCEEEccCccCC
Q 038019 207 NWTKLKSLRFQGNS-FQGP-IPSSLSKLASLESLQMSDIYNV 246 (866)
Q Consensus 207 ~l~~L~~L~L~~N~-l~~~-~p~~~~~l~~L~~L~l~~n~~~ 246 (866)
.+++|+.|.+.++. ++.. +-.....+++|+.|+++.+...
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 25677777766655 3422 1223345667777777765543
|
|
| >KOG4308 consensus LRR-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.39 E-value=0.00065 Score=77.26 Aligned_cols=36 Identities=28% Similarity=0.408 Sum_probs=21.4
Q ss_pred cCEEeccCCcCCCCCC----ccccCCCCCCEeeccCCCCC
Q 038019 115 LMFLSFSHNDFSGPVP----RELGNLKELTVLAFGTNNFS 150 (866)
Q Consensus 115 L~~L~Ls~N~l~~~~p----~~l~~l~~L~~L~Ls~N~l~ 150 (866)
|..|.|.+|.+..... ..+..+..|+.|++++|++.
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~ 128 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLG 128 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCc
Confidence 6677777777654322 23445566666666666665
|
|
| >PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape [] | Back alignment and domain information |
|---|
Probab=94.27 E-value=0.016 Score=35.30 Aligned_cols=12 Identities=33% Similarity=0.664 Sum_probs=5.2
Q ss_pred cCEEeccCCcCC
Q 038019 115 LMFLSFSHNDFS 126 (866)
Q Consensus 115 L~~L~Ls~N~l~ 126 (866)
|++|||++|+|+
T Consensus 2 L~~Ldls~n~l~ 13 (22)
T PF00560_consen 2 LEYLDLSGNNLT 13 (22)
T ss_dssp ESEEEETSSEES
T ss_pred ccEEECCCCcCE
Confidence 344444444444
|
LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A .... |
| >KOG4308 consensus LRR-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.10 E-value=0.00096 Score=75.93 Aligned_cols=185 Identities=21% Similarity=0.143 Sum_probs=94.1
Q ss_pred CCEEEccCCCCCCCCC----ccccCCCCcCEEeccCCcCCCCCCc----cccCC-CCCCEeeccCCCCCCC----Cchhh
Q 038019 91 LTVLKIDQNFFTGPLP----SFIGNLSRLMFLSFSHNDFSGPVPR----ELGNL-KELTVLAFGTNNFSGA----LPPEL 157 (866)
Q Consensus 91 L~~L~Ls~n~l~~~~p----~~l~~l~~L~~L~Ls~N~l~~~~p~----~l~~l-~~L~~L~Ls~N~l~~~----~p~~l 157 (866)
|..|.|.+|.+..... ..+..+..|+.|+|++|.+.+.--. .+... ..|++|++..|.++.. +...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 6777777777765432 3345677788888888877632211 12222 4566677766666543 33445
Q ss_pred cCCCCccEEEeecCCCCC----CChhhhh----cCcCCCEEEecCCCCCCCCcccccCCCCCCeEEccCCCCCCCCchhh
Q 038019 158 GNLAKLEQLYIDSCGAGG----EIPSTFA----KLRNMQTLWASDNPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSL 229 (866)
Q Consensus 158 ~~l~~L~~L~L~~n~l~~----~~p~~~~----~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~ 229 (866)
.....|+.|+++.|.+.. .++..+. ...++++|.+.+|.++...-. .+...+
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~--------------------~l~~~l 228 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCA--------------------LLDEVL 228 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHH--------------------HHHHHH
Confidence 556666666666666531 1122222 234444444444444311000 011122
Q ss_pred cCCCC-CCEEEccCccCCCCCc----hhhhcC-CCCCceeccCcccccCC----CcccCCCCCcCEEeeecCcCcc
Q 038019 230 SKLAS-LESLQMSDIYNVSSSL----DFVMSL-KNLTDLSLRNALITGTI----PFGIGELQMLQILDLSFNNLTG 295 (866)
Q Consensus 230 ~~l~~-L~~L~l~~n~~~~~~~----~~~~~l-~~L~~L~L~~n~l~~~~----p~~~~~l~~L~~L~Ls~N~l~~ 295 (866)
...++ +..|++..|.+..... +.+..+ ..++.++++.|.++..- ...+..++.++.+.+++|.+..
T Consensus 229 ~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 229 ASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred hccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 22232 3344444444432211 122233 45677777777776532 2344556677888888887764
|
|
| >PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape [] | Back alignment and domain information |
|---|
Probab=93.80 E-value=0.017 Score=35.18 Aligned_cols=22 Identities=36% Similarity=0.498 Sum_probs=15.4
Q ss_pred CCCEEEccCCCCCCCCCccccCC
Q 038019 90 YLTVLKIDQNFFTGPLPSFIGNL 112 (866)
Q Consensus 90 ~L~~L~Ls~n~l~~~~p~~l~~l 112 (866)
+|++|||++|+|+ .+|..|++|
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFSNL 22 (22)
T ss_dssp TESEEEETSSEES-EEGTTTTT-
T ss_pred CccEEECCCCcCE-eCChhhcCC
Confidence 4778888888887 677666543
|
LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A .... |
| >KOG4341 consensus F-box protein containing LRR [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.74 E-value=0.012 Score=63.25 Aligned_cols=251 Identities=18% Similarity=0.108 Sum_probs=149.0
Q ss_pred eeEEEEEEcccC-cCCCCCccc-CCCCCCCEEEccCC-CCCCCCCc-cccCCCCcCEEeccCCc-CCCCCC-ccccCCCC
Q 038019 65 CHITKLRVYGLN-KKGVIPEEL-VTLQYLTVLKIDQN-FFTGPLPS-FIGNLSRLMFLSFSHND-FSGPVP-RELGNLKE 138 (866)
Q Consensus 65 ~~v~~L~l~~~~-l~~~~p~~l-~~l~~L~~L~Ls~n-~l~~~~p~-~l~~l~~L~~L~Ls~N~-l~~~~p-~~l~~l~~ 138 (866)
.+++.|++.++. ++...-.++ ..+++|+.|+|..+ .++...-. --..+++|++|+++++. +++.-- .-+.+++.
T Consensus 164 pnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~ 243 (483)
T KOG4341|consen 164 PNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKE 243 (483)
T ss_pred CchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchh
Confidence 467777777764 222222223 35789999999984 55543333 23478999999999984 554221 23456677
Q ss_pred CCEeeccCCCCCCCCchhh----cCCCCccEEEeecCC-CCCCC-hhhhhcCcCCCEEEecCCCC-CCCCcccc-cCCCC
Q 038019 139 LTVLAFGTNNFSGALPPEL----GNLAKLEQLYIDSCG-AGGEI-PSTFAKLRNMQTLWASDNPF-TGKIPDFI-GNWTK 210 (866)
Q Consensus 139 L~~L~Ls~N~l~~~~p~~l----~~l~~L~~L~L~~n~-l~~~~-p~~~~~l~~L~~L~L~~N~l-~~~~p~~l-~~l~~ 210 (866)
|+.+.+.++.=. .-..| +.+.-+..+++..|. ++..- -..-..+..|+.|..+++.. +..+-..+ .+..+
T Consensus 244 l~~~~~kGC~e~--~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~ 321 (483)
T KOG4341|consen 244 LEKLSLKGCLEL--ELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHN 321 (483)
T ss_pred hhhhhhcccccc--cHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCc
Confidence 777777654321 11122 233445566665654 33321 12223567889998887643 32222233 46789
Q ss_pred CCeEEccCCCCCCC-Cchhh-cCCCCCCEEEccCccCCCCC-c-hhhhcCCCCCceeccCcccc-cC----CCcccCCCC
Q 038019 211 LKSLRFQGNSFQGP-IPSSL-SKLASLESLQMSDIYNVSSS-L-DFVMSLKNLTDLSLRNALIT-GT----IPFGIGELQ 281 (866)
Q Consensus 211 L~~L~L~~N~l~~~-~p~~~-~~l~~L~~L~l~~n~~~~~~-~-~~~~~l~~L~~L~L~~n~l~-~~----~p~~~~~l~ 281 (866)
|+.|.++.++.-+. --..+ .+.+.|+.+++..+...... + ..-.+.+.|+.|.|+++... +. ....-..+.
T Consensus 322 L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~ 401 (483)
T KOG4341|consen 322 LQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLE 401 (483)
T ss_pred eEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhcccccc
Confidence 99999998864222 12223 35678888888876544222 2 23346788999999988643 22 122234567
Q ss_pred CcCEEeeecCcCc-ccCCcccCCCCCCcEEECcCCCC
Q 038019 282 MLQILDLSFNNLT-GQIPATLFNIDSLEYLFLGNNSL 317 (866)
Q Consensus 282 ~L~~L~Ls~N~l~-~~~p~~l~~l~~L~~L~L~~N~l 317 (866)
.|..+.|+++... ...-..+..+++|+.++|..++-
T Consensus 402 ~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~ 438 (483)
T KOG4341|consen 402 GLEVLELDNCPLITDATLEHLSICRNLERIELIDCQD 438 (483)
T ss_pred ccceeeecCCCCchHHHHHHHhhCcccceeeeechhh
Confidence 8899999998764 23334555677777777666553
|
|
| >KOG0606 consensus Microtubule-associated serine/threonine kinase and related proteins [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=92.32 E-value=0.29 Score=59.10 Aligned_cols=45 Identities=27% Similarity=0.387 Sum_probs=41.5
Q ss_pred cCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCCch
Q 038019 677 ANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSLD 721 (866)
Q Consensus 677 ~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~ 721 (866)
.||..|.|||...+......+|.|++|++++|.++|..|+....+
T Consensus 996 ~~t~~~laPe~~lg~~hgs~ad~~~~g~~l~e~l~g~pp~na~tp 1040 (1205)
T KOG0606|consen 996 VGTPDYLAPEILLGRRHGSAADWWSSGVCLFEVLTGIPPFNAETP 1040 (1205)
T ss_pred cCCCcccCCcccccccCCCcchhhhhhhhhhhhhcCCCCCCCcch
Confidence 689999999999999999999999999999999999999986544
|
|
| >KOG0473 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.87 E-value=0.0051 Score=60.91 Aligned_cols=84 Identities=23% Similarity=0.260 Sum_probs=47.3
Q ss_pred ccCCCCCCCEEEccCCCCCCCCCccccCCCCcCEEeccCCcCCCCCCccccCCCCCCEeeccCCCCCCCCchhhcCCCCc
Q 038019 84 ELVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKELTVLAFGTNNFSGALPPELGNLAKL 163 (866)
Q Consensus 84 ~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L 163 (866)
++..+...+.||++.|++. ..-..|+.++.|..|+++.|++. .+|..++.+..++.+++..|+++ ..|.+++.++.+
T Consensus 37 ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~ 113 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHP 113 (326)
T ss_pred hhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCc
Confidence 4555566666777776664 23344555666666666666665 45555665555666665555554 444455444444
Q ss_pred cEEEeec
Q 038019 164 EQLYIDS 170 (866)
Q Consensus 164 ~~L~L~~ 170 (866)
+++++..
T Consensus 114 k~~e~k~ 120 (326)
T KOG0473|consen 114 KKNEQKK 120 (326)
T ss_pred chhhhcc
Confidence 4444433
|
|
| >PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ] | Back alignment and domain information |
|---|
Probab=91.54 E-value=0.31 Score=34.25 Aligned_cols=25 Identities=28% Similarity=0.735 Sum_probs=15.9
Q ss_pred CCccEEEEeehHHHHHHHHHHHHHh
Q 038019 598 NHTGLIVGIAVPLGILGLIVISIMF 622 (866)
Q Consensus 598 ~~~~~~~~i~~~~~~~~~~~~~~~~ 622 (866)
+...+++|++++++++++++.++++
T Consensus 9 ~~vaIa~~VvVPV~vI~~vl~~~l~ 33 (40)
T PF08693_consen 9 NTVAIAVGVVVPVGVIIIVLGAFLF 33 (40)
T ss_pred ceEEEEEEEEechHHHHHHHHHHhh
Confidence 3445777788887776665555444
|
This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis []. |
| >KOG0473 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.04 E-value=0.0073 Score=59.85 Aligned_cols=87 Identities=17% Similarity=0.224 Sum_probs=48.8
Q ss_pred ccCCCCcCEEeccCCcCCCCCCccccCCCCCCEeeccCCCCCCCCchhhcCCCCccEEEeecCCCCCCChhhhhcCcCCC
Q 038019 109 IGNLSRLMFLSFSHNDFSGPVPRELGNLKELTVLAFGTNNFSGALPPELGNLAKLEQLYIDSCGAGGEIPSTFAKLRNMQ 188 (866)
Q Consensus 109 l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~ 188 (866)
+....+.+.||++.|++. .+-..|.-++.|..|+++.|++. . .|..++.+..+.
T Consensus 38 i~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~------------------------~~~d~~q~~e~~ 91 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-F------------------------LPKDAKQQRETV 91 (326)
T ss_pred hhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-h------------------------ChhhHHHHHHHH
Confidence 444555566666666554 22333444445555555544443 3 344455555555
Q ss_pred EEEecCCCCCCCCcccccCCCCCCeEEccCCCCC
Q 038019 189 TLWASDNPFTGKIPDFIGNWTKLKSLRFQGNSFQ 222 (866)
Q Consensus 189 ~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~ 222 (866)
.+++..|..+ ..|.+++.++.++++++-.|.+.
T Consensus 92 ~~~~~~n~~~-~~p~s~~k~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 92 NAASHKNNHS-QQPKSQKKEPHPKKNEQKKTEFF 124 (326)
T ss_pred HHHhhccchh-hCCccccccCCcchhhhccCcch
Confidence 5555555554 56677777777777777777654
|
|
| >KOG4158 consensus BRPK/PTEN-induced protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=88.49 E-value=0.72 Score=49.77 Aligned_cols=94 Identities=20% Similarity=0.150 Sum_probs=56.8
Q ss_pred cCCCCccCceeeecC--C----CCchhHHHHHHHHHHHHHhcCCCCCCCchhhhhcHHHHHHHHhhcCCcccccCCcccc
Q 038019 677 ANSYGYLAPEYAMRG--H----LTEKADVFSFGVVALEIISGRASSDKSLDMEKIYLLEWAWNLHENNQSFGLVDPTLTE 750 (866)
Q Consensus 677 ~gt~gY~aPE~~~~~--~----~t~ksDVySfGvvLlEl~tg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~ 750 (866)
.|.-.-||||.+... . --.|+|.|+-|-+-||+++.+.||.... +..+-. +.+++. .=|.+.+
T Consensus 412 GGNa~lmAPEi~ta~PGp~avvny~kAD~WA~GalaYEIfg~~NPFY~rG---em~L~~---r~Yqe~-----qLPalp~ 480 (598)
T KOG4158|consen 412 GGNAKLMAPEIATAVPGPNAVVNYEKADTWAAGALAYEIFGRSNPFYKRG---EMLLDT---RTYQES-----QLPALPS 480 (598)
T ss_pred CCcceecchhhhhcCCCCceeeccchhhhhhhhhhHHHHhccCCcccccc---hheech---hhhhhh-----hCCCCcc
Confidence 466778999987642 1 2379999999999999999999987521 111110 112211 1133322
Q ss_pred cCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHH
Q 038019 751 FNDKEALRVIGVALLCTQTSPMMRPPMSRVVAML 784 (866)
Q Consensus 751 ~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L 784 (866)
..+.. +-++...-++.||.+||+..-....|
T Consensus 481 ~vpp~---~rqlV~~lL~r~pskRvsp~iAANvl 511 (598)
T KOG4158|consen 481 RVPPV---ARQLVFDLLKRDPSKRVSPNIAANVL 511 (598)
T ss_pred cCChH---HHHHHHHHhcCCccccCCccHHHhHH
Confidence 22222 23344566899999999865444443
|
|
| >KOG1164 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=87.95 E-value=1.2 Score=48.55 Aligned_cols=125 Identities=13% Similarity=0.118 Sum_probs=76.4
Q ss_pred HhcCCcccc--cc-CCCCce-eEE----EeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCCchhhhh
Q 038019 654 ATKDFNRSN--KL-GEGGYG-PVY----KVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSLDMEKI 725 (866)
Q Consensus 654 ~~~dF~~~~--~l-g~g~~g-~vy----~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~~~~~ 725 (866)
.+-|||+++ .. +.++-. ..+ .+..||..|.++....+...+.+.|+||.+-++.|+..|.-|+........
T Consensus 167 ~llDfGlar~~~~~~~~~~~~~~~r~~~~~~rGT~ry~S~~~H~~~e~~r~DDles~~Y~l~el~~g~LPW~~~~~~~~- 245 (322)
T KOG1164|consen 167 YLLDFGLARRFKYVGDSGGNLRPPRPQKGLFRGTLRYASINVHLGIEQGRRDDLESLFYMLLELLKGSLPWEALEMTDL- 245 (322)
T ss_pred EEEecCCCccccccCCCCcccccCCCCccCCCCccccccHHHhCCCccCCchhhhhHHHHHHHHhcCCCCCccccccch-
Confidence 456899997 32 222211 222 134599999999999999999999999999999999999999854332111
Q ss_pred cHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhcCcC
Q 038019 726 YLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLAGDIE 789 (866)
Q Consensus 726 ~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~~~~~ 789 (866)
..-+....... ..++ .....+.+...+.. .+-..+..++|.-..+...|.....
T Consensus 246 --~~~~~~~~~~~----~~~~-~~~~~~~~~~~~~~---~~~~~~~~~~Pdy~~~~~~l~~~~~ 299 (322)
T KOG1164|consen 246 --KSKFEKDPRKL----LTDR-FGDLKPEEFAKILE---YIDSLDYEDKPDYEKLAELLKDVFD 299 (322)
T ss_pred --HHHHHHHhhhh----cccc-ccCCChHHHHHHHH---HhhccCCcCCCCHHHHHHHHHHHHH
Confidence 11111111110 1110 11222334444433 4555788999999998888765433
|
|
| >PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D | Back alignment and domain information |
|---|
Probab=85.73 E-value=0.47 Score=26.82 Aligned_cols=8 Identities=25% Similarity=0.505 Sum_probs=2.9
Q ss_pred CEEEccCC
Q 038019 92 TVLKIDQN 99 (866)
Q Consensus 92 ~~L~Ls~n 99 (866)
+.|+|++|
T Consensus 4 ~~L~l~~n 11 (17)
T PF13504_consen 4 RTLDLSNN 11 (17)
T ss_dssp SEEEETSS
T ss_pred CEEECCCC
Confidence 33333333
|
... |
| >COG4248 Uncharacterized protein with protein kinase and helix-hairpin-helix DNA-binding domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.62 E-value=0.82 Score=49.90 Aligned_cols=50 Identities=18% Similarity=0.260 Sum_probs=42.2
Q ss_pred eeEEEeecCCCCccCceeee-----cCCCCchhHHHHHHHHHHHHHhc-CCCCCCC
Q 038019 670 GPVYKVTANSYGYLAPEYAM-----RGHLTEKADVFSFGVVALEIISG-RASSDKS 719 (866)
Q Consensus 670 g~vy~~~~gt~gY~aPE~~~-----~~~~t~ksDVySfGvvLlEl~tg-~~p~~~~ 719 (866)
|++|.+-+|...|..||.-. +-.-+...|-|.+||+++|++.| |.||...
T Consensus 170 g~~~~cpVg~~eftPPElQ~~~sf~g~~r~~~hD~FGLavLiF~lL~ggrHPysGI 225 (637)
T COG4248 170 GTLHLCPVGVSEFTPPELQTLPSFVGFERTANHDNFGLAVLIFHLLFGGRHPYSGI 225 (637)
T ss_pred CceEecccCccccCCHHHhccccccccCCCccccchhHHHHHHHHHhcCCCCCCcc
Confidence 78999999999999999654 33456789999999999998886 9998753
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 866 | ||||
| 3riz_A | 772 | Crystal Structure Of The Plant Steroid Receptor Bri | 5e-24 | ||
| 3rgx_A | 768 | Structural Insight Into Brassinosteroid Perception | 6e-24 | ||
| 1ogq_A | 313 | The Crystal Structure Of Pgip (Polygalacturonase In | 1e-22 | ||
| 1ogq_A | 313 | The Crystal Structure Of Pgip (Polygalacturonase In | 2e-14 | ||
| 3tl8_A | 349 | The Avrptob-Bak1 Complex Reveals Two Structurally S | 1e-18 | ||
| 3uim_A | 326 | Structural Basis For The Impact Of Phosphorylation | 2e-18 | ||
| 3hgk_A | 327 | Crystal Structure Of Effect Protein Avrptob Complex | 3e-17 | ||
| 2qkw_B | 321 | Structural Basis For Activation Of Plant Immunity B | 2e-16 | ||
| 2omt_A | 462 | Crystal Structure Of Inla G194s+sHEC1 COMPLEX Lengt | 4e-08 | ||
| 2omu_A | 462 | Crystal Structure Of Inla G194s+s Y369s/hec1 Comple | 5e-08 | ||
| 2omx_A | 462 | Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX | 1e-07 | ||
| 2omz_A | 466 | Crystal Structure Of Inla Y369a/hec1 Complex Length | 1e-07 | ||
| 1o6s_A | 466 | Internalin (Listeria Monocytogenes) E-Cadherin (Hum | 2e-07 | ||
| 2omy_A | 461 | Crystal Structure Of Inla S192n/hec1 Complex Length | 4e-07 | ||
| 2omv_A | 461 | Crystal Structure Of Inla S192n Y369s/hec1 Complex | 5e-07 | ||
| 3v47_A | 455 | Crystal Structure Of The N-Tetminal Fragment Of Zeb | 9e-06 | ||
| 2nry_A | 307 | Crystal Structure Of Irak-4 Length = 307 | 1e-05 | ||
| 2nru_A | 307 | Crystal Structure Of Irak-4 Length = 307 | 1e-05 | ||
| 2oib_A | 301 | Crystal Structure Of Irak4 Kinase Domain Apo Form L | 1e-05 | ||
| 2o8y_A | 298 | Apo Irak4 Kinase Domain Length = 298 | 6e-05 |
| >pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772 | Back alignment and structure |
|
| >pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768 | Back alignment and structure |
|
| >pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313 | Back alignment and structure |
|
| >pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313 | Back alignment and structure |
|
| >pdb|3TL8|A Chain A, The Avrptob-Bak1 Complex Reveals Two Structurally Similar Kinaseinteracting Domains In A Single Type Iii Effector Length = 349 | Back alignment and structure |
|
| >pdb|3UIM|A Chain A, Structural Basis For The Impact Of Phosphorylation On Plant Receptor- Like Kinase Bak1 Activation Length = 326 | Back alignment and structure |
|
| >pdb|3HGK|A Chain A, Crystal Structure Of Effect Protein Avrptob Complexed With Kinase Pto Length = 327 | Back alignment and structure |
|
| >pdb|2QKW|B Chain B, Structural Basis For Activation Of Plant Immunity By Bacterial Effector Protein Avrpto Length = 321 | Back alignment and structure |
|
| >pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX Length = 462 | Back alignment and structure |
|
| >pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex Length = 462 | Back alignment and structure |
|
| >pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX Length = 462 | Back alignment and structure |
|
| >pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex Length = 466 | Back alignment and structure |
|
| >pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human) Recognition Complex Length = 466 | Back alignment and structure |
|
| >pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex Length = 461 | Back alignment and structure |
|
| >pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex Length = 461 | Back alignment and structure |
|
| >pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish Tlr5 In Complex With Salmonella Flagellin Length = 455 | Back alignment and structure |
|
| >pdb|2NRY|A Chain A, Crystal Structure Of Irak-4 Length = 307 | Back alignment and structure |
|
| >pdb|2NRU|A Chain A, Crystal Structure Of Irak-4 Length = 307 | Back alignment and structure |
|
| >pdb|2OIB|A Chain A, Crystal Structure Of Irak4 Kinase Domain Apo Form Length = 301 | Back alignment and structure |
|
| >pdb|2O8Y|A Chain A, Apo Irak4 Kinase Domain Length = 298 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 245 bits (628), Expect = 5e-70
Identities = 95/309 (30%), Positives = 135/309 (43%), Gaps = 20/309 (6%)
Query: 66 HITKLRVYGLNKKGVIPEELVT---LQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSH 122
+ L + + G V L L I N +G + + L FL S
Sbjct: 152 SLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSS 209
Query: 123 NDFSGPVPRELGNLKELTVLAFGTNNFSGALPPELGNLAKLEQLYIDSCGAGGEIPSTFA 182
N+FS +P LG+ L L N SG + +L+ L I S G IP
Sbjct: 210 NNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP--L 266
Query: 183 KLRNMQTLWASDNPFTGKIPDFI-GNWTKLKSLRFQGNSFQGPIPSSLSKLASLESLQMS 241
L+++Q L ++N FTG+IPDF+ G L L GN F G +P + LESL +S
Sbjct: 267 PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALS 326
Query: 242 DIYNVSSSL--DFVMSLKNLTDLSLRNALITGTIPFGIGELQM-LQILDLSFNNLTGQIP 298
N S L D ++ ++ L L L +G +P + L L LDLS NN +G I
Sbjct: 327 S-NNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPIL 385
Query: 299 ATLFNID--SLEYLFLGNNSLSGTLPDQ--KSENLQKIDLSHNHLSGTFP--LWVNSELQ 352
L +L+ L+L NN +G +P L + LS N+LSGT P L S+L+
Sbjct: 386 PNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLR 445
Query: 353 M-NLAVNNF 360
L +N
Sbjct: 446 DLKLWLNML 454
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 233 bits (596), Expect = 1e-65
Identities = 96/366 (26%), Positives = 153/366 (41%), Gaps = 48/366 (13%)
Query: 25 WNISGNPCS--G--------SALNATDSEFESPNNN-PAIVCNCTFDNGATCHITKLRVY 73
W+ + NPC+ G ++++ + + + + + T + L +
Sbjct: 33 WSSNKNPCTFDGVTCRDDKVTSIDLSSKPLNVGFSAVSSSLLSLT-------GLESLFLS 85
Query: 74 GLNKKGVIPEELVTLQYLTVLKIDQNFFTGPLPSF--IGNLSRLMFLSFSHNDFSGPVPR 131
+ G + LT L + +N +GP+ + +G+ S L FL+ S N P
Sbjct: 86 NSHINGSVSG-FKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKV 144
Query: 132 ELG-NLKELTVLAFGTNNFSGALPPEL---GNLAKLEQLYIDSCGAGGEIPSTFAKLRNM 187
G L L VL N+ SGA +L+ L I G++ ++ N+
Sbjct: 145 SGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNL 202
Query: 188 QTLWASDNPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLESLQMSDIYN-- 245
+ L S N F+ IP F+G+ + L+ L GN G ++S L+ L +S N
Sbjct: 203 EFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNIS--SNQF 259
Query: 246 ---VSSSLDFVMSLKNLTDLSLRNALITGTIPFGI-GELQMLQILDLSFNNLTGQIPATL 301
+ LK+L LSL TG IP + G L LDLS N+ G +P
Sbjct: 260 VGPIPPL-----PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFF 314
Query: 302 FNIDSLEYLFLGNNSLSGTLPDQ---KSENLQKIDLSHNHLSGTFPLWV---NSELQM-N 354
+ LE L L +N+ SG LP K L+ +DLS N SG P + ++ L +
Sbjct: 315 GSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLD 374
Query: 355 LAVNNF 360
L+ NNF
Sbjct: 375 LSSNNF 380
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 230 bits (588), Expect = 2e-64
Identities = 79/296 (26%), Positives = 117/296 (39%), Gaps = 23/296 (7%)
Query: 79 GVIPEEL--VTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNL 136
G I L L L + N FTG +P + N S L+ L S N SG +P LG+L
Sbjct: 382 GPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSL 441
Query: 137 KELTVLAFGTNNFSGALPPELGNLAKLEQLYIDSCGAGGEIPSTFAKLRNMQTLWASDNP 196
+L L N G +P EL + LE L +D GEIPS + N+ + S+N
Sbjct: 442 SKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNR 501
Query: 197 FTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLESLQMSDIYNVSSSLDFV--- 253
TG+IP +IG L L+ NSF G IP+ L SL L ++ N F
Sbjct: 502 LTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNT--N-----LFNGTI 554
Query: 254 -MSLKNLTDLSLRNALITGTIPFGIGELQMLQILDLSFN--NLTGQIPATLFNIDSLEYL 310
++ + N + G I M + + N G L + +
Sbjct: 555 PAAMFKQSGKIAANFI-AGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPC 613
Query: 311 FLGNNSLSGTLPDQKS--ENLQKIDLSHNHLSGTFPLWVNSELQM----NLAVNNF 360
+ + G ++ +D+S+N LSG P + + NL N+
Sbjct: 614 NITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEI-GSMPYLFILNLGHNDI 668
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 227 bits (580), Expect = 2e-63
Identities = 83/270 (30%), Positives = 136/270 (50%), Gaps = 8/270 (2%)
Query: 79 GVIPEELVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKE 138
G IP+EL+ ++ L L +D N TG +PS + N + L ++S S+N +G +P+ +G L+
Sbjct: 456 GEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLEN 515
Query: 139 LTVLAFGTNNFSGALPPELGNLAKLEQLYIDSCGAGGEIPSTFAKLRNMQTLWASDNPFT 198
L +L N+FSG +P ELG+ L L +++ G IP+ K + N
Sbjct: 516 LAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKI----AANFIA 571
Query: 199 GKIPDFIGNWTKLKSLRFQGN--SFQGPIPSSLSKLASLESLQMSDIYNVSSSLDFVMSL 256
GK +I N K GN FQG L++L++ ++ + +
Sbjct: 572 GKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNN 631
Query: 257 KNLTDLSLRNALITGTIPFGIGELQMLQILDLSFNNLTGQIPATLFNIDSLEYLFLGNNS 316
++ L + +++G IP IG + L IL+L N+++G IP + ++ L L L +N
Sbjct: 632 GSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNK 691
Query: 317 LSGTLPDQKSE--NLQKIDLSHNHLSGTFP 344
L G +P S L +IDLS+N+LSG P
Sbjct: 692 LDGRIPQAMSALTMLTEIDLSNNNLSGPIP 721
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 199 bits (509), Expect = 7e-54
Identities = 57/247 (23%), Positives = 98/247 (39%), Gaps = 30/247 (12%)
Query: 79 GVIPEELVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKE 138
G IP+ + L+ L +LK+ N F+G +P+ +G+ L++L + N F+G +P +
Sbjct: 504 GEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSG 563
Query: 139 LTVLAFGTNNFSGALPPELGNLAKLEQLYIDSCGA--GGEIPSTFAKLRNMQTLWASDNP 196
N +G + N ++ + G +L +
Sbjct: 564 KI----AANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRV 619
Query: 197 FTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLESLQMSDIYNVSSSLDFVMSL 256
+ G N + L N G IP + + L L +
Sbjct: 620 YGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLG--------------- 664
Query: 257 KNLTDLSLRNALITGTIPFGIGELQMLQILDLSFNNLTGQIPATLFNIDSLEYLFLGNNS 316
N + +G+IP +G+L+ L ILDLS N L G+IP + + L + L NN+
Sbjct: 665 --------HNDI-SGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNN 715
Query: 317 LSGTLPD 323
LSG +P+
Sbjct: 716 LSGPIPE 722
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 170 bits (434), Expect = 3e-44
Identities = 72/262 (27%), Positives = 93/262 (35%), Gaps = 41/262 (15%)
Query: 65 CHITKLRVYGL--NK-KGVIPEELVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFS 121
+ L + L N G IP EL + L L ++ N F G +P+ + S + +
Sbjct: 511 GRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKI----A 566
Query: 122 HNDFSGPVPRELGNLKELTV--LAFGTNNFSGALPPELGNLAKLEQLYIDSCGAGGEIPS 179
N +G + N A F G +L L+ I S GG
Sbjct: 567 ANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSP 626
Query: 180 TFAKLRNMQTLWASDNPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLESLQ 239
TF +M L S N +G IP IG+ L L N G IP + L L L
Sbjct: 627 TFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNIL- 685
Query: 240 MSDIYNVSSSLDFVMSLKNLTDLSLRNALITGTIPFGIGELQMLQILDLSFNNLTGQIPA 299
DLS N L G IP + L ML +DLS NNL+G IP
Sbjct: 686 ---------------------DLS-SNKL-DGRIPQAMSALTMLTEIDLSNNNLSGPIPE 722
Query: 300 TL----FNIDSLEYLFLGNNSL 317
F FL N L
Sbjct: 723 MGQFETFPPAK----FLNNPGL 740
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 118 bits (297), Expect = 2e-27
Identities = 46/197 (23%), Positives = 77/197 (39%), Gaps = 9/197 (4%)
Query: 26 NISGN--PCSGSALNATDSEFESPNNNPAIVCNCTFDNGATCHITKLRVYGLNKKGVIPE 83
+G + F + + N L +G+ E
Sbjct: 549 LFNGTIPAAMFKQSGKIAANFIA-GKRYVYIKNDGMK-----KECHGAGNLLEFQGIRSE 602
Query: 84 ELVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKELTVLA 143
+L L I + G N +MFL S+N SG +P+E+G++ L +L
Sbjct: 603 QLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILN 662
Query: 144 FGTNNFSGALPPELGNLAKLEQLYIDSCGAGGEIPSTFAKLRNMQTLWASDNPFTGKIPD 203
G N+ SG++P E+G+L L L + S G IP + L + + S+N +G IP+
Sbjct: 663 LGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE 722
Query: 204 FIGNWTKLKSLRFQGNS 220
+G + +F N
Sbjct: 723 -MGQFETFPPAKFLNNP 738
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 217 bits (554), Expect = 4e-64
Identities = 74/286 (25%), Positives = 110/286 (38%), Gaps = 31/286 (10%)
Query: 98 QNFFTGPLPSFIGNLSRLMFLSFSHNDFSG--PVPRELGNLKELTVLAF-GTNNFSGALP 154
+ G L R+ L S + P+P L NL L L G NN G +P
Sbjct: 35 NRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIP 94
Query: 155 PELGNLAKLEQLYIDSCGAGGEIPSTFAKLRNMQTLWASDNPFTGKIPDFIGNWTKLKSL 214
P + L +L LYI G IP ++++ + TL S N +G +P I + L +
Sbjct: 95 PAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGI 154
Query: 215 RFQGNSFQGPIPSSLSKLASLESLQMSDIYNVSSSLDFVMSLKNLTDLSLRNALITGTIP 274
F GN G IP S + L T +++ +TG IP
Sbjct: 155 TFDGNRISGAIPDSYGSFSKL-----------------------FTSMTISRNRLTGKIP 191
Query: 275 FGIGELQMLQILDLSFNNLTGQIPATLFNIDSLEYLFLGNNSLSGTLPD-QKSENLQKID 333
L L +DLS N L G + + + + L NSL+ L S+NL +D
Sbjct: 192 PTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLD 250
Query: 334 LSHNHLSGTFPLWVN--SELQM-NLAVNNFKFDISNISVFPGLNCL 376
L +N + GT P + L N++ NN +I +
Sbjct: 251 LRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVS 296
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 213 bits (544), Expect = 9e-63
Identities = 80/331 (24%), Positives = 130/331 (39%), Gaps = 54/331 (16%)
Query: 9 ALNSILQQW-DAPAVPLWNISGNPCSGS----------------ALNATDSEFESPNNNP 51
AL I + + + W + + C+ + L+ + P P
Sbjct: 10 ALLQIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIP 69
Query: 52 AIVCNCTFDNGATCHITKLRVYGLNK-KGVIPEELVTLQYLTVLKIDQNFFTGPLPSFIG 110
+ + N + + L + G+N G IP + L L L I +G +P F+
Sbjct: 70 SSLANLPY-------LNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLS 122
Query: 111 NLSRLMFLSFSHNDFSGPVPRELGNLKELTVLAFGTNNFSGALPPELGNLAKLEQ-LYID 169
+ L+ L FS+N SG +P + +L L + F N SGA+P G+ +KL + I
Sbjct: 123 QIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTIS 182
Query: 170 SCGAGGEIPSTFAKLRNMQTLWASDNPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSL 229
G+IP TFA L N+ + S N G G+ + + NS + +
Sbjct: 183 RNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KV 240
Query: 230 SKLASLESLQMSDIYNVSSSLDFVMSLKNLTDLSLRNALITGTIPFGIGELQMLQILDLS 289
+L L DL N + GT+P G+ +L+ L L++S
Sbjct: 241 GLSKNLNGL----------------------DLR-NNRI-YGTLPQGLTQLKFLHSLNVS 276
Query: 290 FNNLTGQIPATLFNIDSLEYL-FLGNNSLSG 319
FNNL G+IP N+ + + N L G
Sbjct: 277 FNNLCGEIP-QGGNLQRFDVSAYANNKCLCG 306
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 142 bits (361), Expect = 9e-38
Identities = 50/216 (23%), Positives = 92/216 (42%), Gaps = 32/216 (14%)
Query: 193 SDNPFTGKIPDFIGNWTKLKSLRFQGNSFQG--PIPSSLSKLASLESLQMSDIYNVSSSL 250
+ + G + D ++ +L G + PIPSSL+ L L L + I N+ +
Sbjct: 34 CNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPI 93
Query: 251 -DFVMSLKNLTDLSLRNALITGTIPFGIGELQMLQILDLSFNNLTGQIPATLFNIDSLEY 309
+ L L L + + ++G IP + +++ L LD S+N L+G +P ++ ++ +L
Sbjct: 94 PPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVG 153
Query: 310 LFLGNNSLSGTLPDQ---KSENLQKIDLSHNHLSGTFP---------------------- 344
+ N +SG +PD S+ + +S N L+G P
Sbjct: 154 ITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDA 213
Query: 345 ---LWVNSELQ-MNLAVNNFKFDISNISVFPGLNCL 376
+ Q ++LA N+ FD+ + + LN L
Sbjct: 214 SVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGL 249
|
| >3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3tl8_A* Length = 326 | Back alignment and structure |
|---|
Score = 182 bits (463), Expect = 2e-51
Identities = 49/111 (44%), Positives = 70/111 (63%), Gaps = 3/111 (2%)
Query: 680 YGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSD--KSLDMEKIYLLEWAWNLHEN 737
G++APEY G +EK DVF +GV+ LE+I+G+ + D + + + + LL+W L +
Sbjct: 199 IGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKE 258
Query: 738 NQSFGLVDPTL-TEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLAGD 787
+ LVD L + D+E ++I VALLCTQ+SPM RP MS VV ML GD
Sbjct: 259 KKLEALVDVDLQGNYKDEEVEQLIQVALLCTQSSPMERPKMSEVVRMLEGD 309
|
| >3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3tl8_A* Length = 326 | Back alignment and structure |
|---|
Score = 66.1 bits (162), Expect = 1e-11
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Query: 629 DNDDEEVLVGIGSKPNIFGYAELRSATKDFNRSNKLGEGGYGPVYK 674
+D EV +G + F EL+ A+ +F+ N LG GG+G VYK
Sbjct: 6 AEEDPEVHLG---QLKRFSLRELQVASDNFSNKNILGRGGFGKVYK 48
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 181 bits (461), Expect = 2e-48
Identities = 55/363 (15%), Positives = 109/363 (30%), Gaps = 56/363 (15%)
Query: 76 NKKGVIPEELVTLQYLTVLKIDQNFFTGP-------------------LPSFIGNLSRLM 116
N + + ++ L L + + F NL L
Sbjct: 193 NNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLT 252
Query: 117 FLSFSHNDFSGPVPRELGNLKELTVLAFGTNNF--------SGALPPELGNLAKLEQLYI 168
+ + +P L L E+ ++ N + K++ +YI
Sbjct: 253 DVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYI 312
Query: 169 DSCG-AGGEIPSTFAKLRNMQTLWASDNPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPS 227
+ ++ K++ + L N GK+P F G+ KL SL N +
Sbjct: 313 GYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAF-GSEIKLASLNLAYNQITEIPAN 371
Query: 228 SLSKLASLESLQMSD--IYNVSSSLDFVMSLKNLTDLSLRNALITG-------TIPFGIG 278
+E+L + + + + S+ ++ + I +
Sbjct: 372 FCGFTEQVENLSFAHNKLKYIPNIF-DAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPF 430
Query: 279 ELQMLQILDLSFNNLTGQIPATLFNIDSLEYLFLGNNSLSG-------TLPDQ--KSENL 329
+ + ++LS N ++ L + L N L+ + + L
Sbjct: 431 KGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLL 490
Query: 330 QKIDLSHNHLSGTFPLWVNSELQ----MNLAVNNFK---FDISNISVFPGLNCLQ-RNFT 381
IDL N L+ + + L ++L+ N+F N S G R+
Sbjct: 491 TSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQ 550
Query: 382 CNR 384
NR
Sbjct: 551 GNR 553
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 177 bits (452), Expect = 4e-47
Identities = 46/301 (15%), Positives = 103/301 (34%), Gaps = 29/301 (9%)
Query: 79 GVIPEELVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKE 138
+ L ++ L +L+ N G LP+F G+ +L L+ ++N + G ++
Sbjct: 320 FPVETSLQKMKKLGMLECLYNQLEGKLPAF-GSEIKLASLNLAYNQITEIPANFCGFTEQ 378
Query: 139 LTVLAFGTNNFSGALPP--ELGNLAKLEQLYID-------SCGAGGEIPSTFAKLRNMQT 189
+ L+F N +P + +++ + + + T K N+ +
Sbjct: 379 VENLSFAHNKLKY-IPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSS 437
Query: 190 LWASDNPFTGKIPDFIGNWTKLKSLRFQGNSFQG-------PIPSSLSKLASLESLQMSD 242
+ S+N + + + L S+ GN + L S+ +
Sbjct: 438 INLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRF 497
Query: 243 --IYNVSSSLDFVMSLKNLTDLSLRNALITGTIPFGIGELQMLQIL------DLSFNNLT 294
+ +S +L L + L + P L+ D N
Sbjct: 498 NKLTKLSDDFRAT-TLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTL 555
Query: 295 GQIPATLFNIDSLEYLFLGNNSLSGTLPDQKSENLQKIDLSHNHLSGTFPLWVNSELQMN 354
+ P + SL L +G+N + + ++ + N+ +D+ N +V ++
Sbjct: 556 REWPEGITLCPSLTQLQIGSNDIR-KVNEKITPNISVLDIKDNPNISIDLSYVCPYIEAG 614
Query: 355 L 355
+
Sbjct: 615 M 615
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 169 bits (429), Expect = 3e-44
Identities = 45/272 (16%), Positives = 93/272 (34%), Gaps = 25/272 (9%)
Query: 91 LTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGP----VPRELGNLKELTVLAFGT 146
+T L ++ +G +P IG L+ L L+ + P+ +
Sbjct: 83 VTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMR 142
Query: 147 NNFSGALPPELGNLA--KLEQLYIDSCGAGGEIPSTFAKLRNMQTLWASDNPFTGKIPDF 204
++ L + I+S I + + N T +
Sbjct: 143 MHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKA 201
Query: 205 IGNWTKLKSLRFQGNSFQGPIPSSLSKLASLESLQMSDIYNVSSSLDFVMSLKNLTDLSL 264
+ TKL+ + F + + E Q ++ +LK+LTD+ +
Sbjct: 202 VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWD-----NLKDLTDVEV 256
Query: 265 RNALITGTIPFGIGELQMLQILDLSFNNLT--------GQIPATLFNIDSLEYLFLGNNS 316
N +P + L +Q+++++ N Q A + ++ +++G N+
Sbjct: 257 YNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN 316
Query: 317 LSGTLPDQKS----ENLQKIDLSHNHLSGTFP 344
L T P + S + L ++ +N L G P
Sbjct: 317 LK-TFPVETSLQKMKKLGMLECLYNQLEGKLP 347
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 168 bits (428), Expect = 4e-44
Identities = 36/274 (13%), Positives = 88/274 (32%), Gaps = 32/274 (11%)
Query: 75 LNKKGVIPEELVTLQY--LTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRE 132
++ + + + L I+ + + + + N+ + V +
Sbjct: 143 MHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKA 201
Query: 133 LGNLKELTVLAFGTNNFSGALPPELGNLAKLEQLYIDSCGAGGEIPSTFAKLRNMQTLWA 192
+ L +L G + F E E + L+++ +
Sbjct: 202 VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQ-----YKTEDLKWDNLKDLTDVEV 256
Query: 193 SDNPFTGKIPDFIGNWTKLKSLRFQGNSFQG--PIPSSLSKLASLESLQMSDIYNVSSSL 250
+ P K+P F+ +++ + N + LA
Sbjct: 257 YNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAP-------------- 302
Query: 251 DFVMSLKNLTDLSLR-NALITGTIPFGIGELQMLQILDLSFNNLTGQIPATLFNIDSLEY 309
+ + + + N L T + + +++ L +L+ +N L G++PA + L
Sbjct: 303 ----VGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPA-FGSEIKLAS 357
Query: 310 LFLGNNSLSGTLPD--QKSENLQKIDLSHNHLSG 341
L L N ++ + +E ++ + +HN L
Sbjct: 358 LNLAYNQITEIPANFCGFTEQVENLSFAHNKLKY 391
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 153 bits (389), Expect = 4e-39
Identities = 38/261 (14%), Positives = 80/261 (30%), Gaps = 22/261 (8%)
Query: 97 DQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKELTVLAFGTNNFSG----A 152
+ + + + + R+ LS SG VP +G L EL VLA G++
Sbjct: 65 ELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLF 124
Query: 153 LPPELGNLAKLEQLYIDSCGAGGEIPSTFAKLR--NMQTLWASDNPFTGKIPDFIGNWTK 210
P + EQ + ++ + +P I K
Sbjct: 125 GPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLK 184
Query: 211 LKSLRFQGNSFQGPIPSSLSKLASLESLQMSDIYNVSSSLDFVMSLKNLTDLSLRNALIT 270
+ N+ + ++ +L L M + V+ ++ +N
Sbjct: 185 DTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQ-----Y 238
Query: 271 GTIPFGIGELQMLQILDLSFNNLTGQIPATLFNIDSLEYLFLGNNSLSGTLPDQKS---- 326
T L+ L +++ ++P L + ++ + + N +
Sbjct: 239 KTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQAL 298
Query: 327 ------ENLQKIDLSHNHLSG 341
E +Q I + +N+L
Sbjct: 299 ADAPVGEKIQIIYIGYNNLKT 319
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 2e-05
Identities = 13/100 (13%), Positives = 30/100 (30%), Gaps = 11/100 (11%)
Query: 287 DLSFNNLTGQIPATLFNIDSLEYLFLGNNSLSGTLPDQ--KSENLQKIDLSHNHLSGTFP 344
+ + Q +L + + L L SG +PD + L+ + L +
Sbjct: 63 NKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNER 122
Query: 345 LWVNSEL-------QMNLAVNNFKFDISNISVFPGLNCLQ 377
L+ + Q +++ + P +
Sbjct: 123 LFGPKGISANMSDEQKQKMRMHYQKTF--VDYDPREDFSD 160
|
| >2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A* Length = 307 | Back alignment and structure |
|---|
Score = 166 bits (424), Expect = 3e-46
Identities = 31/122 (25%), Positives = 57/122 (46%), Gaps = 10/122 (8%)
Query: 670 GPVYKVTANS------YGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSLDME 723
+ T + Y+APE +RG +T K+D++SFGVV LEII+G + D+ + +
Sbjct: 183 SEKFAQTVMTSRIVGTTAYMAPEA-LRGEITPKSDIYSFGVVLLEIITGLPAVDEHREPQ 241
Query: 724 KIYLLEWAWNLHENNQSF-GLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVA 782
LL+ + + ++ +D + + + + VA C RP + +V
Sbjct: 242 --LLLDIKEEIEDEEKTIEDYIDKKMNDADSTSVEAMYSVASQCLHEKKNKRPDIKKVQQ 299
Query: 783 ML 784
+L
Sbjct: 300 LL 301
|
| >2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A* Length = 307 | Back alignment and structure |
|---|
Score = 60.6 bits (148), Expect = 6e-10
Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 6/49 (12%)
Query: 632 DEEVLVGIGSKPNIFGYAELRSATKDFNR------SNKLGEGGYGPVYK 674
+ + L ++ + F + EL++ T +F+ NK+GEGG+G VYK
Sbjct: 1 ENKSLEVSDTRFHSFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYK 49
|
| >2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A* Length = 321 | Back alignment and structure |
|---|
Score = 158 bits (402), Expect = 4e-43
Identities = 41/113 (36%), Positives = 61/113 (53%), Gaps = 1/113 (0%)
Query: 679 SYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSLDMEKIYLLEWAWNLHENN 738
+ GY+ PEY ++G LTEK+DV+SFGVV E++ R++ +SL E + L EWA H N
Sbjct: 204 TLGYIDPEYFIKGRLTEKSDVYSFGVVLFEVLCARSAIVQSLPREMVNLAEWAVESHNNG 263
Query: 739 QSFGLVDPTLT-EFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLAGDIEV 790
Q +VDP L + + + A+ C S RP M V+ L + +
Sbjct: 264 QLEQIVDPNLADKIRPESLRKFGDTAVKCLALSSEDRPSMGDVLWKLEYALRL 316
|
| >2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A* Length = 321 | Back alignment and structure |
|---|
Score = 55.3 bits (134), Expect = 3e-08
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 646 FGYAELRSATKDFNRSNKLGEGGYGPVYK 674
+L AT +F+ +G G +G VYK
Sbjct: 29 VPLVDLEEATNNFDHKFLIGHGVFGKVYK 57
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 165 bits (419), Expect = 1e-42
Identities = 67/333 (20%), Positives = 122/333 (36%), Gaps = 23/333 (6%)
Query: 66 HITKLRVYGLNKKGVIPEELVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDF 125
+IT L + + + LT L + N + P L L L+ HN+
Sbjct: 26 NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNEL 85
Query: 126 SGPVPRELGNLKELTVLAFGTNNFSGALPPELGNLAKLEQLYIDSCGAGGEIPSTFAKLR 185
S + LT L +N+ L L + G T +L
Sbjct: 86 SQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLE 145
Query: 186 NMQTLWASDNPFTGKIPDFIGNW--TKLKSLRFQGNSFQGPIPSSLSKLASLESLQMSD- 242
N+Q L S+N + + + + LK L N + P + L L +++
Sbjct: 146 NLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNV 205
Query: 243 --IYNVSSSLDFVMSLKNLTDLSLRNALITGTIPFGIGELQM--LQILDLSFNNLTGQIP 298
+++ L ++ ++ +LSL N+ ++ T L+ L +LDLS+NNL
Sbjct: 206 QLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGN 265
Query: 299 ATLFNIDSLEYLFLGNNSLSGTLPD--QKSENLQKIDLSHNHLSGTFPLWVNSELQ---- 352
+ + LEY FL N++ N++ ++L + + L ++
Sbjct: 266 DSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSF 325
Query: 353 --------MNLAVNNFKFDISNISVFPGLNCLQ 377
+N+ N+ SN+ F GL L+
Sbjct: 326 QWLKCLEHLNMEDNDIPGIKSNM--FTGLINLK 356
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 165 bits (419), Expect = 1e-42
Identities = 64/302 (21%), Positives = 106/302 (35%), Gaps = 18/302 (5%)
Query: 81 IPEELVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKELT 140
+P++L +TVL + N + S+L L N S P L L
Sbjct: 19 VPDDL--PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLK 76
Query: 141 VLAFGTNNFSGALPPELGNLAKLEQLYIDSCGAGGEIPSTFAKLRNMQTLWASDNPFTGK 200
VL N S L +L++ S + F K +N+ TL S N +
Sbjct: 77 VLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSST 136
Query: 201 IPDFIGNWTKLKSLRFQGNSFQGPIPSSLS--KLASLESLQMSD--IYNVSSSLDFVMSL 256
L+ L N Q L +SL+ L++S I S ++
Sbjct: 137 KLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFH--AI 194
Query: 257 KNLTDLSLRNALITGTIPFGIGE---LQMLQILDLSFNNLTGQIPATLFNID--SLEYLF 311
L L L N + ++ + ++ L LS + L+ T + +L L
Sbjct: 195 GRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLD 254
Query: 312 LGNNSLSGTLPD--QKSENLQKIDLSHNHLSGTFPLWVN--SELQM-NLAVNNFKFDISN 366
L N+L+ D L+ L +N++ F ++ ++ NL + K IS
Sbjct: 255 LSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISL 314
Query: 367 IS 368
S
Sbjct: 315 AS 316
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 162 bits (411), Expect = 9e-42
Identities = 59/339 (17%), Positives = 105/339 (30%), Gaps = 35/339 (10%)
Query: 58 TFDNGATCHITKLRVYGLNK---KGVIPEELVTLQYLTVLKIDQNFFTGPLPSFIG--NL 112
N L L+ V L+ L L + N +
Sbjct: 111 KIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFAN 170
Query: 113 SRLMFLSFSHNDFSGPVPRELGNLKELTVLAFGTNNFSGALPPELG---NLAKLEQLYID 169
S L L S N P + L L +L +L + L +
Sbjct: 171 SSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLS 230
Query: 170 SCGAGGEIPSTFAKLR--NMQTLWASDNPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPS 227
+ +TF L+ N+ L S N D +L+ + N+ Q
Sbjct: 231 NSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSH 290
Query: 228 SLSKLASLESLQMSDIYNVSSSLDFVMSLKNLTDLSLRNALITGTIPFGIGELQMLQILD 287
SL L ++ L + + T S+ A + F L+ L+ L+
Sbjct: 291 SLHGLFNVRYLNLKR---------------SFTKQSISLASLPKIDDFSFQWLKCLEHLN 335
Query: 288 LSFNNLTGQIPATLFNIDSLEYLFLGNNSLS------GTLPDQKSENLQKIDLSHNHLSG 341
+ N++ G + +L+YL L N+ S T L ++L+ N +S
Sbjct: 336 MEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISK 395
Query: 342 TFP--LWVNSELQ-MNLAVNNFKFDISNISVFPGLNCLQ 377
L+ ++L +N +++ + GL +
Sbjct: 396 IESDAFSWLGHLEVLDLGLNEIGQELTG-QEWRGLENIF 433
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 160 bits (408), Expect = 2e-41
Identities = 62/319 (19%), Positives = 96/319 (30%), Gaps = 48/319 (15%)
Query: 78 KGVIPEELVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLS------------------ 119
+ L+ L L ++ N G + L L +LS
Sbjct: 318 PKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVS 377
Query: 120 ----------FSHNDFSGPVPRELGNLKELTVLAFGTNNFSGALPP-ELGNLAKLEQLYI 168
+ N S L L VL G N L E L + ++Y+
Sbjct: 378 LAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYL 437
Query: 169 DSCGAGGEIPSTFAKLRNMQTLWASDNPFTG--KIPDFIGNWTKLKSLRFQGNSFQGPIP 226
++FA + ++Q L P L L N+
Sbjct: 438 SYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANIND 497
Query: 227 SSLSKLASLESLQMSD--------IYNVSSSLDFVMSLKNLTDLSLRNALITGTIPFGIG 278
L L LE L + N + F+ L +L L+L +
Sbjct: 498 DMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFK 557
Query: 279 ELQMLQILDLSFNNLTGQIPATLFNIDSLEYLFLGNNSLSGTLPDQKSE---NLQKIDLS 335
+L L+I+DL NNL + N SL+ L L N ++ NL ++D+
Sbjct: 558 DLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMR 617
Query: 336 HNHLSGT------FPLWVN 348
N T F W+N
Sbjct: 618 FNPFDCTCESIAWFVNWIN 636
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 113 bits (284), Expect = 6e-26
Identities = 47/272 (17%), Positives = 86/272 (31%), Gaps = 44/272 (16%)
Query: 82 PEELVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSG--PVPRELGNLKEL 139
+E L+ + + + N + + + L L P L+ L
Sbjct: 423 GQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNL 482
Query: 140 TVLAFGTNNFSGALPPELGNLAKLEQLY--------IDSCGAGGEIPSTFAKLRNMQTLW 191
T+L NN + L L KLE L + G L ++ L
Sbjct: 483 TILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILN 542
Query: 192 ASDNPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLESLQMSDIYNVSSSLD 251
N F + + +LK + N+ S + SL+SL + N+ +S++
Sbjct: 543 LESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQ--KNLITSVE 600
Query: 252 ---FVMSLKNLTDLSLRNALITGTIPFGIGELQMLQILDLSFNNLTGQIPATLFNIDSL- 307
F + +NLT+ LD+ FN + + ++ +
Sbjct: 601 KKVFGPAFRNLTE------------------------LDMRFNPFDCTCESIAWFVNWIN 636
Query: 308 ----EYLFLGNNSLSGTLPDQKSENLQKIDLS 335
L ++ L T P ++ D S
Sbjct: 637 ETHTNIPELSSHYLCNTPPHYHGFPVRLFDTS 668
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 74.3 bits (183), Expect = 1e-13
Identities = 34/154 (22%), Positives = 49/154 (31%), Gaps = 13/154 (8%)
Query: 79 GVIPEELVTLQYLTVLKIDQN--------FFTGPLPSFIGNLSRLMFLSFSHNDFSGPVP 130
+ + L L+ L +L + N G F+ LS L L+ N F
Sbjct: 494 NINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPV 553
Query: 131 RELGNLKELTVLAFGTNNFSGALPPELGNLAKLEQLYIDSCGAGGEIPSTFAK-LRNMQT 189
+L EL ++ G NN + N L+ L + F RN+
Sbjct: 554 EVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTE 613
Query: 190 LWASDNPFTG---KIPDFIGNWTKLKSLRFQGNS 220
L NPF I F+ NW S
Sbjct: 614 LDMRFNPFDCTCESIAWFV-NWINETHTNIPELS 646
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 51.9 bits (125), Expect = 8e-07
Identities = 16/64 (25%), Positives = 26/64 (40%), Gaps = 5/64 (7%)
Query: 283 LQILDLSFNNLTGQIPATLFNIDSLEYLFLGNNSLSGTLPD--QKSENLQKIDLSHNHLS 340
++ D S LT Q+P L ++ L L +N L + L +D+ N +S
Sbjct: 6 HEVADCSHLKLT-QVPDDLPT--NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTIS 62
Query: 341 GTFP 344
P
Sbjct: 63 KLEP 66
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 156 bits (396), Expect = 4e-40
Identities = 61/333 (18%), Positives = 100/333 (30%), Gaps = 24/333 (7%)
Query: 81 IPEELVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKELT 140
IP+ L L + N + L L S + +L L+
Sbjct: 22 IPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLS 79
Query: 141 VLAFGTNNFSGALPPELGNLAKLEQLYIDSCGAGGEIPSTFAKLRNMQTLWASDNPFTG- 199
L N L+ L++L L+ ++ L + N
Sbjct: 80 TLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF 139
Query: 200 KIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLESLQMS---DIYNVSSSLDFVMSL 256
K+P++ N T L+ L N Q + L L + L +S + ++
Sbjct: 140 KLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE 199
Query: 257 KNLTDLSLRNALITGTIPFG-IGELQMLQILDLS------FNNLTGQIPATLFNIDSLEY 309
L L+LRN + + I L L++ L NL + L + +L
Sbjct: 200 IRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTI 259
Query: 310 LFLGNNSLSGTLPD-----QKSENLQKIDLSHNHLSGTFPLWVNSELQMNLAVNNFKFDI 364
L L D N+ L + N Q +L + N KF
Sbjct: 260 EEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQ-HLELVNCKF-- 316
Query: 365 SNISVFPGLNCLQRNFTCNRN---APQCKLPSL 394
+ + FT N+ + LPSL
Sbjct: 317 GQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSL 349
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 152 bits (385), Expect = 9e-39
Identities = 56/283 (19%), Positives = 97/283 (34%), Gaps = 18/283 (6%)
Query: 91 LTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKELTVLAFGTN--N 148
L++ F + +L RL F S + +L L L N +
Sbjct: 306 WQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGN-----AFSEVDLPSLEFLDLSRNGLS 360
Query: 149 FSGALPPELGNLAKLEQLYIDSCGAGGEIPSTFAKLRNMQTLWASDNPFTGKIP-DFIGN 207
F G L+ L + G + S F L ++ L + +
Sbjct: 361 FKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLS 419
Query: 208 WTKLKSLRFQGNSFQGPIPSSLSKLASLESLQMSDIYNVSSSL-DFVMSLKNLTDLSLRN 266
L L + + L+SLE L+M+ + L D L+NLT L L
Sbjct: 420 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 479
Query: 267 ALITGTIPFGIGELQMLQILDLSFNNLTGQIPATLFNIDSLEYLFLGNNSLSGTLPDQ-- 324
+ P L LQ+L++S NN ++SL+ L N + + +
Sbjct: 480 CQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQ 539
Query: 325 -KSENLQKIDLSHNHLSGT-----FPLWVNSELQMNLAVNNFK 361
+L ++L+ N + T F W+ + Q+ + V +
Sbjct: 540 HFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERME 582
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 152 bits (385), Expect = 1e-38
Identities = 48/315 (15%), Positives = 94/315 (29%), Gaps = 20/315 (6%)
Query: 78 KGVIPEELVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLK 137
+ + + L VL + + +LS L L + N L
Sbjct: 41 RHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLS 100
Query: 138 ELTVLAFGTNNFSGALPPELGNLAKLEQLYIDSCG-AGGEIPSTFAKLRNMQTLWASDNP 196
L L N + +G+L L++L + ++P F+ L N++ L S N
Sbjct: 101 SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK 160
Query: 197 FTGKIPDFIGNWTKLK----SLRFQGNSFQGPIPSSLSKLASLESLQMSD-IYNVSSSLD 251
+ ++ SL N P + ++ L L + + +++
Sbjct: 161 IQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKT 219
Query: 252 FVMSLKNLTDLSLRNAL------ITGTIPFGIGELQMLQILDLSFNNL---TGQIPATLF 302
+ L L L + + L L I + L I
Sbjct: 220 CIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFN 279
Query: 303 NIDSLEYLFLGNNSLSGTLPDQKSENLQKIDLSHNHLSGTFPLWVNSELQMNLAVNNFKF 362
+ ++ L + ++ + Q ++L + FP L+ L + K
Sbjct: 280 CLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQ-FPTLKLKSLK-RLTFTSNK- 336
Query: 363 DISNISVFPGLNCLQ 377
N L L+
Sbjct: 337 -GGNAFSEVDLPSLE 350
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 126 bits (318), Expect = 3e-30
Identities = 44/235 (18%), Positives = 73/235 (31%), Gaps = 8/235 (3%)
Query: 75 LNKKGVIPEELVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRE-L 133
L+ KG + L L + N + S L +L L F H++
Sbjct: 359 LSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVF 417
Query: 134 GNLKELTVLAFGTNNFSGALPPELGNLAKLEQLYIDSCG-AGGEIPSTFAKLRNMQTLWA 192
+L+ L L + A L+ LE L + +P F +LRN+ L
Sbjct: 418 LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDL 477
Query: 193 SDNPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLESLQMSD--IYNVSSSL 250
S P + + L+ L N+F L SL+ L S I
Sbjct: 478 SQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQE 537
Query: 251 DFVMSLKNLTDLSLRNALITGTIPFG--IGELQMLQILDLSFNNLTGQIPATLFN 303
+L L+L T + ++ + L + + P+
Sbjct: 538 -LQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQG 591
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 51.2 bits (123), Expect = 1e-06
Identities = 18/110 (16%), Positives = 30/110 (27%), Gaps = 27/110 (24%)
Query: 78 KGVIPEELVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRELGN-- 135
+ + P +L L VL + N F L+ L L +S N +EL +
Sbjct: 483 EQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFP 542
Query: 136 -------------------------LKELTVLAFGTNNFSGALPPELGNL 160
+K+ L A P + +
Sbjct: 543 SSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGM 592
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 144 bits (366), Expect = 3e-38
Identities = 52/276 (18%), Positives = 94/276 (34%), Gaps = 25/276 (9%)
Query: 65 CHITKLRVYGLNKKG--VIPEEL--VTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSF 120
+ ++ + + L T L++ P LS L ++
Sbjct: 53 ANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLPQ-FPDQAFRLSHLQHMTI 111
Query: 121 SHNDFSGPVPRELGNLKELTVLAFGTNNFSGALPPELGNLAKLEQLYIDSCGAGGEIPST 180
+P + L L N ALP + +L +L +L I +C E+P
Sbjct: 112 DAAGLME-LPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEP 169
Query: 181 FAK---------LRNMQTLWASDNPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSK 231
A L N+Q+L +P I N LKSL+ + + + ++
Sbjct: 170 LASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHH 227
Query: 232 LASLESLQMSDIYNVSSSL-DFVMSLKNLTDLSLR--NALITGTIPFGIGELQMLQILDL 288
L LE L + + L L L+ + L+T +P I L L+ LDL
Sbjct: 228 LPKLEELDLRG-CTALRNYPPIFGGRAPLKRLILKDCSNLLT--LPLDIHRLTQLEKLDL 284
Query: 289 SFNNLTGQIPATLFNIDSLEYLFLGNNSLSGTLPDQ 324
++P+ + + + + + + L L
Sbjct: 285 RGCVNLSRLPSLIAQLPANCIILVPPH-LQAQLDQH 319
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 138 bits (351), Expect = 3e-36
Identities = 55/292 (18%), Positives = 100/292 (34%), Gaps = 27/292 (9%)
Query: 68 TKLRVYGLNKKGVIPEELVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSG 127
L G + L Q ++ N + + +
Sbjct: 15 ENLYFQGSTALRPYHDVLSQWQRHYNADRNRW----HSAWRQANSNNPQIETRTGRALKA 70
Query: 128 PVPRELGNLKE--LTVLAFGTNNFSGALPPELGNLAKLEQLYIDSCGAGGEIPSTFAKLR 185
L + + L + P + L+ L+ + ID+ G E+P T +
Sbjct: 71 -TADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFA 127
Query: 186 NMQTLWASDNPFTGKIPDFIGNWTKLKSLRFQGNS---------FQGPIPSSLSKLASLE 236
++TL + NP +P I + +L+ L + L +L+
Sbjct: 128 GLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQ 186
Query: 237 SLQMSD--IYNVSSSLDFVMSLKNLTDLSLRNALITGTIPFGIGELQMLQILDLSFNNLT 294
SL++ I ++ +S+ +L+NL L +RN+ ++ + I L L+ LDL
Sbjct: 187 SLRLEWTGIRSLPASIA---NLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTAL 242
Query: 295 GQIPATLFNIDSLEYLFLGNNSLSGTLPDQ--KSENLQKIDLSHNHLSGTFP 344
P L+ L L + S TLP + L+K+DL P
Sbjct: 243 RNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLP 294
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 131 bits (331), Expect = 1e-33
Identities = 58/307 (18%), Positives = 108/307 (35%), Gaps = 21/307 (6%)
Query: 8 RALNSILQQWDAPAVPLWNISGNPCSGSALNATDSEFESPNNNPAIVCNCTFDNGATCHI 67
R + +L QW N + + N E + A ++
Sbjct: 26 RPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADL--LEDATQPGR 83
Query: 68 TKLRVYGLNKKGVIPEELVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSG 127
L + P++ L +L + ID LP + + L L+ + N
Sbjct: 84 VALELRS-VPLPQFPDQAFRLSHLQHMTIDAAGLME-LPDTMQQFAGLETLTLARNPLRA 141
Query: 128 PVPRELGNLKELTVLAFGTNNFSGALPPELGN---------LAKLEQLYIDSCGAGGEIP 178
+P + +L L L+ LP L + L L+ L ++ G +P
Sbjct: 142 -LPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLP 199
Query: 179 STFAKLRNMQTLWASDNPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLESL 238
++ A L+N+++L ++P + + I + KL+ L +G + P A L+ L
Sbjct: 200 ASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRL 258
Query: 239 QMSDIYNVSSSL-DFVMSLKNLTDLSLRNALITGTIPFGIGELQMLQILDLSFN---NLT 294
+ D + +L + L L L LR + +P I +L I+ + + L
Sbjct: 259 ILKD-CSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLD 317
Query: 295 GQIPATL 301
P
Sbjct: 318 QHRPVAR 324
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 127 bits (321), Expect = 2e-32
Identities = 42/265 (15%), Positives = 84/265 (31%), Gaps = 26/265 (9%)
Query: 91 LTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKELTVLAFGTNNFS 150
L + P + R + N +
Sbjct: 14 RENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHS----AWRQANSNNPQIETRTGRALK 69
Query: 151 GALPPELGNLA--KLEQLYIDSCGAGGEIPSTFAKLRNMQTLWASDNPFTGKIPDFIGNW 208
A L + L + S + P +L ++Q + ++PD + +
Sbjct: 70 -ATADLLEDATQPGRVALELRSVPL-PQFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQF 126
Query: 209 TKLKSLRFQGNSFQGPIPSSLSKLASLESLQMSD----------IYNVSSSLDFVMSLKN 258
L++L N + +P+S++ L L L + + + + L N
Sbjct: 127 AGLETLTLARNPLRA-LPASIASLNRLRELSIRACPELTELPEPLAST-DASGEHQGLVN 184
Query: 259 LTDLSLRNALITGTIPFGIGELQMLQILDLSFNNLTGQIPATLFNIDSLEYLFLGNNSLS 318
L L L I ++P I LQ L+ L + + L+ + + ++ LE L L +
Sbjct: 185 LQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTAL 242
Query: 319 GTLPDQ--KSENLQKIDLSH-NHLS 340
P L+++ L ++L
Sbjct: 243 RNYPPIFGGRAPLKRLILKDCSNLL 267
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 100 bits (252), Expect = 3e-23
Identities = 41/248 (16%), Positives = 78/248 (31%), Gaps = 39/248 (15%)
Query: 130 PRELGNLKELTVLAFGTNNFSGALPPELGNLAKLEQLYIDSCGAGGEIPS---------- 179
+ L F + L + + + +
Sbjct: 5 HHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRT 64
Query: 180 -----------TFAKLRNMQTLWASDNPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSS 228
A L P + PD + L+ + +P +
Sbjct: 65 GRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLME-LPDT 122
Query: 229 LSKLASLESLQMSDIYNVSSSL-DFVMSLKNLTDLSLRNALITGTIPFGIG--------- 278
+ + A LE+L ++ N +L + SL L +LS+R +P +
Sbjct: 123 MQQFAGLETLTLA--RNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQ 180
Query: 279 ELQMLQILDLSFNNLTGQIPATLFNIDSLEYLFLGNNSLSGTLPDQ--KSENLQKIDLSH 336
L LQ L L + + +PA++ N+ +L+ L + N+ LS L L+++DL
Sbjct: 181 GLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRG 238
Query: 337 NHLSGTFP 344
+P
Sbjct: 239 CTALRNYP 246
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 84.2 bits (209), Expect = 1e-17
Identities = 32/204 (15%), Positives = 64/204 (31%), Gaps = 23/204 (11%)
Query: 151 GALPPELGNLAKLEQLYIDSCGAGGEIPSTFAKLRNMQTLWASDNPFTGKIPDFIGNWTK 210
G+ + + E LY + L Q + +D N
Sbjct: 2 GSSHHHHHHSSGRENLYFQGS---TALRPYHDVLSQWQRHYNADRNRWHSAWR-QANSNN 57
Query: 211 LKSLRFQGNSFQGPIPSSLSKLAS--LESLQMSDIYNVSSSL-DFVMSLKNLTDLSLRNA 267
+ G + + L +L++ D L +L +++ A
Sbjct: 58 PQIETRTGRALKA-TADLLEDATQPGRVALELRS--VPLPQFPDQAFRLSHLQHMTIDAA 114
Query: 268 LITGTIPFGIGELQMLQILDLSFNNLTGQIPATLFNIDSLEYLFLGNNSLSGTLPD---- 323
+ +P + + L+ L L+ N L +PA++ +++ L L + LP+
Sbjct: 115 GLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLAS 172
Query: 324 -------QKSENLQKIDLSHNHLS 340
Q NLQ + L +
Sbjct: 173 TDASGEHQGLVNLQSLRLEWTGIR 196
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 51.1 bits (123), Expect = 7e-07
Identities = 12/103 (11%), Positives = 27/103 (26%), Gaps = 10/103 (9%)
Query: 246 VSSSLDFVMSLKNLTDLSLRNALITGTIPFGIGELQMLQILDLSFNNLTGQIPATLFNID 305
+ SS +L + + + + Q D + + + N +
Sbjct: 1 MGSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQA----NSN 56
Query: 306 SLEYLFLGNNSLSGTLPDQ----KSENLQKIDLSHNHLSGTFP 344
+ + +L D ++L L FP
Sbjct: 57 NPQIETRTGRALK-ATADLLEDATQPGRVALELRSVPLP-QFP 97
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 151 bits (384), Expect = 6e-38
Identities = 47/340 (13%), Positives = 99/340 (29%), Gaps = 45/340 (13%)
Query: 26 NISGNPCSGSALNATDSEFESPNNNPAIVCNCTFDNGATCHITKLRVYGLNKKGVIPEE- 84
NI+ N + I + N P
Sbjct: 521 NIACNR-----GISAAQLKADWTRLADDEDTGP-------KIQIFYMGY-NNLEEFPASA 567
Query: 85 -LVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRELG-NLKELTVL 142
L + L +L N L +F G +L L +N +P + ++ L
Sbjct: 568 SLQKMVKLGLLDCVHNKVRH-LEAF-GTNVKLTDLKLDYNQIEE-IPEDFCAFTDQVEGL 624
Query: 143 AFGTNNFSGALPP--ELGNLAKLEQLYIDSCGAGGEIPSTFA-----KLRNMQTLWASDN 195
F N +P ++ + + G E + K N T+ S N
Sbjct: 625 GFSHNKLKY-IPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYN 683
Query: 196 PFTGKIPDFIGNWTKLKSLRFQGNSFQ-------GPIPSSLSKLASLESLQMSD--IYNV 246
+ + + ++ N P + L ++ + + ++
Sbjct: 684 EIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSL 743
Query: 247 SSSLDFVMSLKNLTDLSLRNALITGTIPFGIGELQMLQILDLSF------NNLTGQIPAT 300
S +L L+++ + + + P L+ + N + Q P
Sbjct: 744 SDDFRAT-TLPYLSNMDVSYNCFS-SFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTG 801
Query: 301 LFNIDSLEYLFLGNNSLSGTLPDQKSENLQKIDLSHNHLS 340
+ SL L +G+N + + ++ + L +D++ N
Sbjct: 802 ITTCPSLIQLQIGSNDIR-KVDEKLTPQLYILDIADNPNI 840
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 150 bits (379), Expect = 2e-37
Identities = 57/379 (15%), Positives = 108/379 (28%), Gaps = 63/379 (16%)
Query: 76 NKKGVIPEELVTLQYLTVLKIDQNFFTGP-------------------LPSFIGNLSRLM 116
N+ I + + L L ++ + FT NL L
Sbjct: 435 NRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLT 494
Query: 117 FLSFSHNDFSGPVPRELGNLKELTVLAFGTNNFSG---------ALPPELGNLAKLEQLY 167
+ + +P L +L EL L N L + K++ Y
Sbjct: 495 DVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFY 554
Query: 168 IDSCG-AGGEIPSTFAKLRNMQTLWASDNPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIP 226
+ ++ K+ + L N + F G KL L+ N + IP
Sbjct: 555 MGYNNLEEFPASASLQKMVKLGLLDCVHNKVR-HLEAF-GTNVKLTDLKLDYNQIEE-IP 611
Query: 227 SSL-SKLASLESLQMSDIYNVSSSL---DFVMSLKNLTDLSLRNALITG-----TIPFGI 277
+ +E L S +N + S+ + + I +
Sbjct: 612 EDFCAFTDQVEGLGFS--HNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDD 669
Query: 278 GELQMLQILDLSFNNLTGQIPATLFNIDSLEYLFLGNNSLSGTLPDQKSE---------- 327
+ + LS+N + + + L NN ++ ++P+ +
Sbjct: 670 YKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTY 728
Query: 328 NLQKIDLSHNHLSGTFPLWVNSELQ----MNLAVNNFK---FDISNISVFPGLNCLQRNF 380
L IDL N L+ + + L M+++ N F N S ++
Sbjct: 729 LLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFG-IRHQR 787
Query: 381 TCNRNAPQCKLP-SLCCLH 398
N + P +
Sbjct: 788 DAEGNRILRQWPTGITTCP 806
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 143 bits (363), Expect = 2e-35
Identities = 57/366 (15%), Positives = 106/366 (28%), Gaps = 62/366 (16%)
Query: 9 ALNSILQQWDAPAVPLWNISGNPCSGSALNATDSEFESPNNNPAIVCNCTFDNGATCHIT 68
AL +I + D ++ + N S + E + + P + + +NG +T
Sbjct: 273 ALKAIWEALDGKNWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLD---NNG---RVT 326
Query: 69 KLRVYGLNKKGVIPEELVTLQYLTVLKIDQNFFTGPLPS--------------------- 107
L + G KG +P+ + L L VL + T
Sbjct: 327 GLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMH 386
Query: 108 ----FIGNLSRLMFLSFSHNDFSG------PVPRELGNLKELTVLAFGTNNFSGALPPEL 157
F+ RL + + +LK+ + N + +
Sbjct: 387 YKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIG--NLTNRITFISKAI 444
Query: 158 GNLAKLEQLYIDSCGAGGEIPSTFAKLRNMQTLWASDNPFTGKIPDFIGNWTKLKSLRFQ 217
L KL+ +Y + + + + N N L +
Sbjct: 445 QRLTKLQIIYFANSPFTYDNIAVDWEDANS-----DYAKQYENEELSWSNLKDLTDVELY 499
Query: 218 GNSFQGPIPSSLSKLASLESLQMSDIYNVSSSLDFVMSLKNLTDLSLRNALITGTIPFGI 277
+P L L L+SL ++ N + A T +
Sbjct: 500 NCPNMTQLPDFLYDLPELQSLNIA--CN------------RGISAAQLKADWT-RLADDE 544
Query: 278 GELQMLQILDLSFNNLTG-QIPATLFNIDSLEYLFLGNNSLSGTLPD-QKSENLQKIDLS 335
+QI + +NNL A+L + L L +N + L + L + L
Sbjct: 545 DTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR-HLEAFGTNVKLTDLKLD 603
Query: 336 HNHLSG 341
+N +
Sbjct: 604 YNQIEE 609
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 131 bits (332), Expect = 1e-31
Identities = 45/302 (14%), Positives = 96/302 (31%), Gaps = 29/302 (9%)
Query: 97 DQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKELTVLAFGTNNFSGALPPE 156
+ + + + N R+ LS + G VP +G L EL VL+FGT++ + +
Sbjct: 307 ELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLF 366
Query: 157 LGNLAKLEQLYIDSCGAGGEIPSTF-AKLRNMQTLWASDNPFTGK---IPDFIGNWTKLK 212
+ F + + + P + LK
Sbjct: 367 GDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLK 426
Query: 213 SLRFQGNSFQ-GPIPSSLSKLASLESLQMSDIYNVSSSLDFVMSLKNLTDLSLRNALITG 271
+ + + I ++ +L L+ + ++ S + + D + A
Sbjct: 427 DTQIGNLTNRITFISKAIQRLTKLQIIYFAN-----SPFTYDNIAVDWEDANSDYAKQYE 481
Query: 272 TIPFGIGELQMLQILDLSFNNLTGQIPATLFNIDSLEYLFLGNNSLSG---------TLP 322
L+ L ++L Q+P L+++ L+ L + N L
Sbjct: 482 NEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLA 541
Query: 323 DQKSE--NLQKIDLSHNHLSG---TFPLWVNSELQ-MNLAVNNFKFDISNISVFPGLNCL 376
D + +Q + +N+L + L +L ++ N + ++ F L
Sbjct: 542 DDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNK----VRHLEAFGTNVKL 597
Query: 377 QR 378
Sbjct: 598 TD 599
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 119 bits (301), Expect = 6e-28
Identities = 30/258 (11%), Positives = 74/258 (28%), Gaps = 28/258 (10%)
Query: 81 IPEEL-VTLQYLTVLKIDQNFFTG-PLPSFIGNLSRLMFLSFSHNDFSG-----PVPREL 133
IPE+ + L N P ++ + + FS+N +
Sbjct: 610 IPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDD 669
Query: 134 GNLKELTVLAFGTNNFSGALPPELGNLAKLEQLYIDSC-------GAGGEIPSTFAKLRN 186
+ + N + + + + + + +
Sbjct: 670 YKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYL 729
Query: 187 MQTLWASDNPFTGKIPD--FIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLESLQMSDIY 244
+ T+ N T + D L ++ N F P+ + L++ +
Sbjct: 730 LTTIDLRFNKLTS-LSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQR 787
Query: 245 NVSSSL------DFVMSLKNLTDLSLRNALITGTIPFGIGELQMLQILDLSFNNLT-GQI 297
+ + + + +L L + + I + + L ILD++ N +
Sbjct: 788 DAEGNRILRQWPTGITTCPSLIQLQIGSNDIR-KVDEKL--TPQLYILDIADNPNISIDV 844
Query: 298 PATLFNIDSLEYLFLGNN 315
+ I++ Y+ L +
Sbjct: 845 TSVCPYIEAGMYVLLYDK 862
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 99.6 bits (248), Expect = 2e-21
Identities = 32/239 (13%), Positives = 66/239 (27%), Gaps = 33/239 (13%)
Query: 81 IPE--ELVTLQYLTVLKIDQNFFTG-----PLPSFIGNLSRLMFLSFSHNDFSGPVPREL 133
IP ++ + + N ++ S+N+
Sbjct: 634 IPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELF 693
Query: 134 GNLKELTVLAFGTNNFS-------GALPPELGNLAKLEQLYIDSCGAGGEIPSTFA--KL 184
++ + N + N L + + + F L
Sbjct: 694 ATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTL 752
Query: 185 RNMQTLWASDNPFTGKIPDFIGNWTKLKSLR------FQGNSFQGPIPSSLSKLASLESL 238
+ + S N F+ P N ++LK+ +GN P+ ++ SL L
Sbjct: 753 PYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQL 811
Query: 239 QMSD--IYNVSSSLDFVMSLKNLTDLSLR-NALITGTIPFGIGELQMLQILDLSFNNLT 294
Q+ I V L L L + N I+ + ++ + L ++
Sbjct: 812 QIGSNDIRKVDEKL-----TPQLYILDIADNPNISIDVTSVCPYIE-AGMYVLLYDKTQ 864
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 59.1 bits (143), Expect = 5e-09
Identities = 18/159 (11%), Positives = 51/159 (32%), Gaps = 6/159 (3%)
Query: 223 GPIPSSLSKLASLESLQMSDIYNVSSSLDFVMSLKNLTDLSLRNALITGTIPFGIGELQM 282
I + A E+L + S +++ + N + + + +
Sbjct: 266 EYIKDYKALKAIWEALDGKNWRYYSGTINNTIHSLN-WNFNKELDMWGDQPGVDLDNNGR 324
Query: 283 LQILDLSFNNLTGQIPATLFNIDSLEYLFLGNNSLSGTLPDQKSENL--QKIDLSHNHLS 340
+ L L+ G++P + + L+ L G +S + + E L + + +
Sbjct: 325 VTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIR 384
Query: 341 GTFP---LWVNSELQMNLAVNNFKFDISNISVFPGLNCL 376
+ L + L ++ + + + + +
Sbjct: 385 MHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRI 423
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 140 bits (356), Expect = 1e-36
Identities = 55/260 (21%), Positives = 97/260 (37%), Gaps = 15/260 (5%)
Query: 81 IPEELVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKELT 140
L L L L ++++ + S + NL+++ L+ N L N+ L
Sbjct: 102 DISALQNLTNLRELYLNEDNISDI--SPLANLTKMYSLNLGANHNLS-DLSPLSNMTGLN 158
Query: 141 VLAFGTNNFSGALPPELGNLAKLEQLYIDSCGAGGEIPSTFAKLRNMQTLWASDNPFTGK 200
L + + NL L L ++ P A L ++ A N T
Sbjct: 159 YLTVTESKVKD--VTPIANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDI 214
Query: 201 IPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLESLQMSDIYNVSSSLDFVMSLKNLT 260
P + N T+L SL+ N P L+ L+ L L++ N S ++ V L L
Sbjct: 215 TP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIG--TNQISDINAVKDLTKLK 268
Query: 261 DLSLRNALITGTIPFGIGELQMLQILDLSFNNLTGQIPATLFNIDSLEYLFLGNNSLSGT 320
L++ + I+ + L L L L+ N L + + + +L LFL N ++
Sbjct: 269 MLNVGSNQISDISV--LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDI 326
Query: 321 LPDQKSENLQKIDLSHNHLS 340
P + D ++ +
Sbjct: 327 RPLASLSKMDSADFANQVIK 346
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 137 bits (347), Expect = 2e-35
Identities = 67/304 (22%), Positives = 113/304 (37%), Gaps = 23/304 (7%)
Query: 83 EELVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKELTVL 142
L + + T + L + L + + + + L L L
Sbjct: 16 FPDADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVASI--QGIEYLTNLEYL 71
Query: 143 AFGTNNFSGALPPELGNLAKLEQLYIDSCGAGGEIPSTFAKLRNMQTLWASDNPFTGKIP 202
N + L NL KL LYI + S L N++ L+ +++ + P
Sbjct: 72 NLNGNQITD--ISPLSNLVKLTNLYIGTNKI--TDISALQNLTNLRELYLNEDNISDISP 127
Query: 203 DFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLESLQMSDIYNVSSSLDFVMSLKNLTDL 262
+ N TK+ SL N S LS + L L +++ + + + +L +L L
Sbjct: 128 --LANLTKMYSLNLGANHNLS-DLSPLSNMTGLNYLTVTE--SKVKDVTPIANLTDLYSL 182
Query: 263 SLRNALITGTIPFGIGELQMLQILDLSFNNLTGQIPATLFNIDSLEYLFLGNNSLSGTLP 322
SL I P L L N +T P + N+ L L +GNN ++ P
Sbjct: 183 SLNYNQIEDISPLA--SLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP 238
Query: 323 DQKSENLQKIDLSHNHLSGTFPLWVNSELQM-NLAVNNFKFDISNISVFPGLNCLQRNFT 381
L +++ N +S + ++L+M N+ N IS+ISV L+ L +
Sbjct: 239 LANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGSNQ----ISDISVLNNLSQLN-SLF 293
Query: 382 CNRN 385
N N
Sbjct: 294 LNNN 297
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 133 bits (337), Expect = 3e-34
Identities = 69/272 (25%), Positives = 111/272 (40%), Gaps = 19/272 (6%)
Query: 83 EELVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKELTVL 142
L L LT L I N T S + NL+ L L + ++ S P L NL ++ L
Sbjct: 82 SPLSNLVKLTNLYIGTNKITDI--SALQNLTNLRELYLNEDNISDISP--LANLTKMYSL 137
Query: 143 AFGTNNFSGALPPELGNLAKLEQLYIDSCGAGGEIPSTFAKLRNMQTLWASDNPFTGKIP 202
G N+ L N+ L L + P A L ++ +L + N P
Sbjct: 138 NLGANHNLS-DLSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP 194
Query: 203 DFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLESLQMSDIYNVSSSLDFVMSLKNLTDL 262
+ + T L N P ++ + L SL++ + N + L + +L LT L
Sbjct: 195 --LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGN--NKITDLSPLANLSQLTWL 248
Query: 263 SLRNALITGTIPFGIGELQMLQILDLSFNNLTGQIPATLFNIDSLEYLFLGNNSLSGTLP 322
+ I+ I + +L L++L++ N ++ I L N+ L LFL NN L
Sbjct: 249 EIGTNQIS-DIN-AVKDLTKLKMLNVGSNQISD-ISV-LNNLSQLNSLFLNNNQLGNEDM 304
Query: 323 D--QKSENLQKIDLSHNHLSGTFPLWVNSELQ 352
+ NL + LS NH++ PL S++
Sbjct: 305 EVIGGLTNLTTLFLSQNHITDIRPLASLSKMD 336
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 145 bits (368), Expect = 2e-36
Identities = 65/334 (19%), Positives = 114/334 (34%), Gaps = 18/334 (5%)
Query: 48 NNNPAIVCNCTFDNGATCHITKLRVYGLNKKGVIPEELVTLQYLTVLKIDQNFFTGPLPS 107
+ + + F+ + + + + L L + + LPS
Sbjct: 237 DMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSE-LPS 295
Query: 108 FIGNLSRLMFLSFSHNDFSGPVPRELGNLKELTVLAFGTNNFSGALPPE-LGNLAKLEQL 166
+ LS L L S N F N LT L+ N L L NL L +L
Sbjct: 296 GLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLREL 355
Query: 167 YIDSC--GAGGEIPSTFAKLRNMQTLWASDNPFTGKIPDFIGNWTKLKSLRFQGNSFQG- 223
+ L ++Q+L S N + +L+ L +
Sbjct: 356 DLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVK 415
Query: 224 PIPSSLSKLASLESLQMSDIYNVSSSL--DFVMSLKNLTDLSLRNALITGTIPFGIGELQ 281
S L L+ L +S +++ L L L+L+ LQ
Sbjct: 416 DAQSPFQNLHLLKVLNLS--HSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQ 473
Query: 282 ---MLQILDLSFNNLTGQIPATLFNIDSLEYLFLGNNSLSGTLPD--QKSENLQKIDLSH 336
L+IL LSF +L+ ++ + ++ L +N L+ + + + + ++L+
Sbjct: 474 TLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIY-LNLAS 532
Query: 337 NHLSGTFP--LWVNSELQM-NLAVNNFKFDISNI 367
NH+S P L + S+ + NL N SNI
Sbjct: 533 NHISIILPSLLPILSQQRTINLRQNPLDCTCSNI 566
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 137 bits (347), Expect = 6e-34
Identities = 56/295 (18%), Positives = 97/295 (32%), Gaps = 33/295 (11%)
Query: 79 GVIPEELVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKE 138
+ + + L L + N + + L L F S L N K
Sbjct: 71 WIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKT 130
Query: 139 LTVLAFGTNNFSGALPPELGNLAKLEQLYIDSCGAGGEIPSTFAKLRNMQ--TLWASDNP 196
L L G+N+ S P+ KL+ L + + L+ +L + N
Sbjct: 131 LESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGND 190
Query: 197 FTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLS--KLASLESLQMSD--IYNVSSSLDF 252
G I + +SL F G I L + SL D ++S ++
Sbjct: 191 IAG-IEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFE 249
Query: 253 VMSLKNLTDLSLRNALITG-----------------------TIPFGIGELQMLQILDLS 289
+ ++ ++L+ +P G+ L L+ L LS
Sbjct: 250 GLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLS 309
Query: 290 FNNLTGQIPATLFNIDSLEYLFLGNNSLSGTLPD---QKSENLQKIDLSHNHLSG 341
N + N SL +L + N+ L + ENL+++DLSH+ +
Sbjct: 310 ANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIET 364
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 132 bits (333), Expect = 4e-32
Identities = 53/308 (17%), Positives = 89/308 (28%), Gaps = 15/308 (4%)
Query: 81 IPEELVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKELT 140
IP L L+ N + L L FL + + L
Sbjct: 27 IPGTL--PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLD 84
Query: 141 VLAFGTNNFSGALPPELGNLAKLEQLYIDSCGAGGEIPSTFAKLRNMQTLWASDNPFTGK 200
L N L L+ L+ G + +++L+ N +
Sbjct: 85 TLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSI 144
Query: 201 IPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLESLQMSDIYNVSSSLD-FVMSLKNL 259
KLK L FQ N+ +S L +L ++ N + ++
Sbjct: 145 KLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVF 204
Query: 260 TDLSLRNALITGTIPFGIG--ELQMLQILDLSFNNLTGQIPATLFNID---SLEYLFLGN 314
L+ I G+ +Q L + + I +F S+E + L
Sbjct: 205 QSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDE-DISPAVFEGLCEMSVESINLQK 263
Query: 315 NSLSGTLPD--QKSENLQKIDLSHNHLSGTFPLWVN-SELQM-NLAVNNFKFDISNISVF 370
+ + LQ++DL+ HLS V S L+ L+ N F+
Sbjct: 264 HYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQI--SA 321
Query: 371 PGLNCLQR 378
L
Sbjct: 322 SNFPSLTH 329
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 126 bits (319), Expect = 2e-30
Identities = 62/283 (21%), Positives = 91/283 (32%), Gaps = 33/283 (11%)
Query: 78 KGVIPEELVTLQYLTVLKIDQNFFTGPLPS-FIGNLSRLMFLSFSHND--FSGPVPRELG 134
+ + LT L I N L + + NL L L SH+D S +L
Sbjct: 314 ENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLR 373
Query: 135 NLKELTVLAFGTNNFSGALPPELGNLAKLEQLYIDSCG-AGGEIPSTFAKLRNMQTLWAS 193
NL L L N +LE L + + S F L ++ L S
Sbjct: 374 NLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLS 433
Query: 194 DNPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLESLQMSDIYNVSSSLDFV 253
+ L+ L QGN F + L +L L++
Sbjct: 434 HSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEI------------- 480
Query: 254 MSLKNLTDLSLRNALITGTIPFGIGELQMLQILDLSFNNLTGQIPATLFNIDSLEYLFLG 313
L L ++ L+M+ +DLS N LT L ++ + YL L
Sbjct: 481 --------LVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLA 531
Query: 314 NNSLSGTLPD--QKSENLQKIDLSHNHLSGT-----FPLWVNS 349
+N +S LP + I+L N L T F W
Sbjct: 532 SNHISIILPSLLPILSQQRTINLRQNPLDCTCSNIYFLEWYKE 574
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 138 bits (351), Expect = 2e-36
Identities = 54/310 (17%), Positives = 108/310 (34%), Gaps = 23/310 (7%)
Query: 81 IPEELVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKELT 140
I E + K+ + L S + + L S N S +L +L
Sbjct: 2 IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61
Query: 141 VLAFGTNNFSGALPPELGNLAKLEQLYIDSCGAGGEIPSTFAKLRNMQTLWASDNPFTGK 200
+L +N +L +L+ L L +++ + +++TL A++N + +
Sbjct: 62 LLNLSSNVLYE--TLDLESLSTLRTLDLNNN----YV-QELLVGPSIETLHAANNNIS-R 113
Query: 201 IPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLESLQMSD--IYNVSSSLDFVMSLKN 258
+ K++ N + ++ L + I V+ + + S
Sbjct: 114 VS--CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFA-ELAASSDT 170
Query: 259 LTDLSLRNALITGTIPFGIGELQMLQILDLSFNNLTGQIPATLFNIDSLEYLFLGNNSLS 318
L L+L+ I + + L+ LDLS N L + + + ++ L NN L
Sbjct: 171 LEHLNLQYNFIY-DVKGQVV-FAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV 227
Query: 319 GTLPD--QKSENLQKIDLSHNHLS-GTFPLWVNSELQM-NLAVNNFKFDISNISVFPGLN 374
+ + S+NL+ DL N GT + + ++ +A K +
Sbjct: 228 -LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVP 286
Query: 375 CLQR--NFTC 382
L + C
Sbjct: 287 TLGHYGAYCC 296
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 100 bits (251), Expect = 4e-23
Identities = 42/208 (20%), Positives = 71/208 (34%), Gaps = 23/208 (11%)
Query: 152 ALPPELGNLAKLEQLYIDSCGAGGEIPSTFAKLRNMQTLWASDNPFTGKIPDFIGNWTKL 211
A+ N + + + + S N++ L S NP + + +TKL
Sbjct: 1 AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60
Query: 212 KSLRFQGNSFQGPIP-----------------SSLSKLASLESLQMSDIYNVSSSLDFVM 254
+ L N + L S+E+L + N S +
Sbjct: 61 ELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAA--NNNISRVSC-S 117
Query: 255 SLKNLTDLSLRNALITGTIPFGIGELQMLQILDLSFNNLTG-QIPATLFNIDSLEYLFLG 313
+ ++ L N IT G +Q LDL N + + D+LE+L L
Sbjct: 118 RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQ 177
Query: 314 NNSLSGTLPDQKS-ENLQKIDLSHNHLS 340
N + + Q L+ +DLS N L+
Sbjct: 178 YNFIY-DVKGQVVFAKLKTLDLSSNKLA 204
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 142 bits (360), Expect = 3e-36
Identities = 76/295 (25%), Positives = 116/295 (39%), Gaps = 21/295 (7%)
Query: 83 EELVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKELTVL 142
L L L + ++ N P + NL+ L L+ +N + P L NL L L
Sbjct: 84 TPLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRL 139
Query: 143 AFGTNNFSGALPPELGNLAKLEQLYIDSCGAGGEIPSTFAKLRNMQTLWASDNPFTGKIP 202
+N S L L L+QL + A L ++ L S N +
Sbjct: 140 ELSSNTISD--ISALSGLTSLQQLSFGNQVTD---LKPLANLTTLERLDISSNKVSD--I 192
Query: 203 DFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLESLQMSDIYNVSSSLDFVMSLKNLTDL 262
+ T L+SL N P L L +L+ L ++ N + + SL NLTDL
Sbjct: 193 SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLN--GNQLKDIGTLASLTNLTDL 248
Query: 263 SLRNALITGTIPFGIGELQMLQILDLSFNNLTGQIPATLFNIDSLEYLFLGNNSLSGTLP 322
L N I+ P + L L L L N ++ P L + +L L L N L P
Sbjct: 249 DLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP 304
Query: 323 DQKSENLQKIDLSHNHLSGTFPLWVNSELQM-NLAVNNFKFDISNISVFPGLNCL 376
+NL + L N++S P+ ++LQ N D+S+++ +N L
Sbjct: 305 ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVS-DVSSLANLTNINWL 358
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 138 bits (349), Expect = 7e-35
Identities = 68/290 (23%), Positives = 117/290 (40%), Gaps = 24/290 (8%)
Query: 82 PEELVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKELTV 141
L L L L N T P + NL+ L L S N S L L L
Sbjct: 149 ISALSGLTSLQQLSFG-NQVTDLKP--LANLTTLERLDISSNKVSDISV--LAKLTNLES 203
Query: 142 LAFGTNNFSGALPPELGNLAKLEQLYIDSCGAGGEIPSTFAKLRNMQTLWASDNPFTGKI 201
L N S LG L L++L ++ + T A L N+ L ++N +
Sbjct: 204 LIATNNQISD--ITPLGILTNLDELSLNGNQ--LKDIGTLASLTNLTDLDLANNQISNLA 259
Query: 202 PDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLESLQMSDIYNVSSSLDFVMSLKNLTD 261
P + TKL L+ N P L+ L +L +L++++ N + + +LKNLT
Sbjct: 260 P--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNE--NQLEDISPISNLKNLTY 313
Query: 262 LSLRNALITGTIPFGIGELQMLQILDLSFNNLTGQIPATLFNIDSLEYLFLGNNSLSGTL 321
L+L I+ P + L LQ L N ++ ++L N+ ++ +L G+N +S
Sbjct: 314 LTLYFNNISDISP--VSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQISDLT 369
Query: 322 PDQKSENLQKIDLSHNHLSGTFPLWVNSELQMNLAVNNFKFDISNISVFP 371
P + ++ L+ + + N+++ N +++ + P
Sbjct: 370 PLANLTRITQLGLNDQAWTN-----APVNYKANVSIPNTVKNVTGALIAP 414
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 135 bits (343), Expect = 5e-34
Identities = 79/315 (25%), Positives = 119/315 (37%), Gaps = 30/315 (9%)
Query: 66 HITKLRVYGLNKKGVIPEELVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDF 125
K + N + + L +T L+ D+ + L+ L ++FS+N
Sbjct: 25 EKMKTVLGKTNVTDTVSQT--DLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQL 80
Query: 126 SGPVPRELGNLKELTVLAFGTNNFSGALPPELGNLAKLEQLYIDSCGAGGEI--PSTFAK 183
+ P L NL +L + N + L NL L L + + +I
Sbjct: 81 TDITP--LKNLTKLVDILMNNNQIAD--ITPLANLTNLTGLTLFNN----QITDIDPLKN 132
Query: 184 LRNMQTLWASDNPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLESLQMSDI 243
L N+ L S N + + T L+ L F GN P L+ L +LE L +S
Sbjct: 133 LTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTDLKP--LANLTTLERLDIS-- 185
Query: 244 YNVSSSLDFVMSLKNLTDLSLRNALITGTIPFGIGELQMLQILDLSFNNLTGQIPATLFN 303
N S + + L NL L N I+ P +G L L L L+ N L TL +
Sbjct: 186 SNKVSDISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD--IGTLAS 241
Query: 304 IDSLEYLFLGNNSLSGTLPDQKSENLQKIDLSHNHLSGTFPLWVNSELQM-NLAVNNFKF 362
+ +L L L NN +S P L ++ L N +S PL + L L N
Sbjct: 242 LTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQ--- 298
Query: 363 DISNISVFPGLNCLQ 377
+ +IS L L
Sbjct: 299 -LEDISPISNLKNLT 312
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 133 bits (336), Expect = 4e-33
Identities = 82/323 (25%), Positives = 129/323 (39%), Gaps = 38/323 (11%)
Query: 83 EELVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKELTVL 142
L L LT L + N T + NL+ L L S N S L L L L
Sbjct: 106 TPLANLTNLTGLTLFNNQITDI--DPLKNLTNLNRLELSSNTISDISA--LSGLTSLQQL 161
Query: 143 AFGTNNFSGALPPELGNLAKLEQLYIDSCGAGGEIPSTFAKLRNMQTLWASDNPFTGKIP 202
+FG N + P L NL LE+L I S S AKL N+++L A++N + P
Sbjct: 162 SFG-NQVTDLKP--LANLTTLERLDISSNKV--SDISVLAKLTNLESLIATNNQISDITP 216
Query: 203 DFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLESL-----QMSDIYNVS---------- 247
+G T L L GN + +L+ L +L L Q+S++ +S
Sbjct: 217 --LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKL 272
Query: 248 -----SSLDFVMSLKNLTDLSLRNALITGTIPFGIGELQMLQILDLSFNNLTGQIPATLF 302
S++ + L LT+L L + P I L+ L L L FNN++ P +
Sbjct: 273 GANQISNISPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VS 328
Query: 303 NIDSLEYLFLGNNSLSGTLPDQKSENLQKIDLSHNHLSGTFPLWVNSELQMNLAVNNFKF 362
++ L+ LF NN +S N+ + HN +S PL + + L +N+ +
Sbjct: 329 SLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISDLTPLANLTRIT-QLGLNDQAW 387
Query: 363 DISNISVFPGLNCLQRNFTCNRN 385
+ ++ ++
Sbjct: 388 TNAPVNYKANVSIPNTVKNVTGA 410
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 128 bits (323), Expect = 2e-31
Identities = 63/270 (23%), Positives = 100/270 (37%), Gaps = 22/270 (8%)
Query: 109 IGNLSRLMFLSFSHNDFSGPVPRELGNLKELTVLAFGTNNFSGALPPELGNLAKLEQLYI 168
L+ M + + V +L ++T L + L L Q+
Sbjct: 20 DTALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKS--IDGVEYLNNLTQINF 75
Query: 169 DSCGAGGEIPSTFAKLRNMQTLWASDNPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSS 228
+ P L + + ++N P + N T L L N P
Sbjct: 76 SNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP-- 129
Query: 229 LSKLASLESLQMSDIYNVSSSLDFVMSLKNLTDLSLRNALITGTIPFGIGELQMLQILDL 288
L L +L L++S N S + + L +L LS N +T P + L L+ LD+
Sbjct: 130 LKNLTNLNRLELS--SNTISDISALSGLTSLQQLSFGN-QVTDLKP--LANLTTLERLDI 184
Query: 289 SFNNLTGQIPATLFNIDSLEYLFLGNNSLSGTLPDQKSENLQKIDLSHNHLSGTFPLWVN 348
S N ++ + L + +LE L NN +S P NL ++ L+ N L L
Sbjct: 185 SSNKVSD--ISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASL 242
Query: 349 SELQM-NLAVNNFKFDISNISVFPGLNCLQ 377
+ L +LA N ISN++ GL L
Sbjct: 243 TNLTDLDLANNQ----ISNLAPLSGLTKLT 268
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 106 bits (266), Expect = 3e-24
Identities = 45/241 (18%), Positives = 82/241 (34%), Gaps = 15/241 (6%)
Query: 82 PEELVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKELTV 141
L +L LT L + N + P + L++L L N S P L L LT
Sbjct: 236 IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTN 291
Query: 142 LAFGTNNFSGALPPELGNLAKLEQLYIDSCGAGGEIPSTFAKLRNMQTLWASDNPFTGKI 201
L N + NL L L + P + L +Q L+ +N +
Sbjct: 292 LELNENQLED--ISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSD-- 345
Query: 202 PDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLESLQMSDIYNVSSSLDFVMSLKNLTD 261
+ N T + L N P L+ L + L ++D ++ +++ ++
Sbjct: 346 VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIPNT 403
Query: 262 LSLRNALITGTIPFGIGELQMLQILDLSFNNLTGQIPATLFNIDSLEYLFLGNNSLSGTL 321
+ + P I + D+++N + + + G + SGT+
Sbjct: 404 VKNVTGALI--APATISDGGSYTEPDITWNLPS-YTNEVSYTFSQPVTIGKGTTTFSGTV 460
Query: 322 P 322
Sbjct: 461 T 461
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 90.4 bits (225), Expect = 3e-19
Identities = 41/201 (20%), Positives = 78/201 (38%), Gaps = 16/201 (7%)
Query: 179 STFAKLRNMQTLWASDNPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLESL 238
T L T + + ++ +L+ + + L +L +
Sbjct: 18 FTDTALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIK--SIDGVEYLNNLTQI 73
Query: 239 QMSDIYNVSSSLDFVMSLKNLTDLSLRNALITGTIPFGIGELQMLQILDLSFNNLTGQIP 298
S+ N + + + +L L D+ + N I P + L L L L N +T P
Sbjct: 74 NFSN--NQLTDITPLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP 129
Query: 299 ATLFNIDSLEYLFLGNNSLSGTLPDQKSENLQKIDLSHNHLSGTFPLWVNSELQM-NLAV 357
L N+ +L L L +N++S +LQ++ N ++ PL + L+ +++
Sbjct: 130 --LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFG-NQVTDLKPLANLTTLERLDISS 186
Query: 358 NNFKFDISNISVFPGLNCLQR 378
N +S+ISV L L+
Sbjct: 187 NK----VSDISVLAKLTNLES 203
|
| >2jwp_A Malectin, MGC80075; sugar binding, sugar binding protein; NMR {Xenopus laevis} PDB: 2k46_A* 2kr2_A* Length = 174 | Back alignment and structure |
|---|
Score = 133 bits (335), Expect = 5e-36
Identities = 36/182 (19%), Positives = 55/182 (30%), Gaps = 33/182 (18%)
Query: 403 ADNIVYEGDNSYLGASAFVVTNTEKWAVSKVGLFNGRENASYVLNTQDQVTGTRTPKLYQ 462
I Y D + Y + + LYQ
Sbjct: 20 VHGIHYRKDPLEGRVGR---------------------ASDYGMKLPILRSNPEDQVLYQ 58
Query: 463 TSRISAGSLRYYGLGLVNGPYNVSLLFAETNFPDPSTERWESRGRRVFDIYVQGTLRWKD 522
T R + S Y G Y + L FAE F ++VFD+ V G KD
Sbjct: 59 TERYNEDSFGYDIPIKEEGEYVLVLKFAEVYFAQS--------QQKVFDVRVNGHTVVKD 110
Query: 523 FDISKEAGGPNRAIIKNFSATVSENHLEIHLF---WAGKGTCCIPKQGNYGPAISALSVV 579
DI G + A + ++ + L + + GK + K P + AL ++
Sbjct: 111 LDIFDRVGH-STAHDEIIPISIKKGKLSVQGEVSTFTGKLSVEFVKGYYDNPKVCALFIM 169
Query: 580 SA 581
Sbjct: 170 KG 171
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 140 bits (355), Expect = 1e-35
Identities = 57/325 (17%), Positives = 110/325 (33%), Gaps = 22/325 (6%)
Query: 81 IPEELVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKELT 140
I E + K+ + L S + + L S N S +L +L
Sbjct: 2 IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61
Query: 141 VLAFGTNNFSGALPPELGNLAKLEQLYIDSCGAGGEIPSTFAKLRNMQTLWASDNPFTGK 200
+L +N +L +L+ L L +++ + +++TL A++N + +
Sbjct: 62 LLNLSSNVLYE--TLDLESLSTLRTLDLNNN----YV-QELLVGPSIETLHAANNNIS-R 113
Query: 201 IPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLESLQMSD--IYNVSSSLDFVMSLKN 258
+ K++ N + ++ L + I V+ + + S
Sbjct: 114 VS--CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFA-ELAASSDT 170
Query: 259 LTDLSLRNALITGTIPFGIGELQMLQILDLSFNNLTGQIPATLFNIDSLEYLFLGNNSLS 318
L L+L+ I + + L+ LDLS N L + + + ++ L NN L
Sbjct: 171 LEHLNLQYNFIY-DVKGQVV-FAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV 227
Query: 319 GTLPD--QKSENLQKIDLSHNHLS-GTFPLWVNSELQM-NLAVNNFKF-DISNISVFPGL 373
+ + S+NL+ DL N GT + + ++ +A K N
Sbjct: 228 -LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVP 286
Query: 374 NCLQRNFTCNRNAPQCKLPSLCCLH 398
C + P L L
Sbjct: 287 TLGHYGAYCCEDLPAPFADRLIALK 311
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 105 bits (263), Expect = 8e-24
Identities = 28/270 (10%), Positives = 66/270 (24%), Gaps = 14/270 (5%)
Query: 78 KGVIPEELVTLQYLTVLKIDQNFFTG-PLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNL 136
+ + + L + N + L L+ +N V ++
Sbjct: 133 TMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD-VKGQV-VF 190
Query: 137 KELTVLAFGTNNFSGALPPELGNLAKLEQLYIDSCGAGGEIPSTFAKLRNMQTLWASDNP 196
+L L +N + + PE + A + + + + I +N++ N
Sbjct: 191 AKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNG 248
Query: 197 F-TGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLESLQMSDIYNVSSSLDFVMS 255
F G + DF +++++ + + + + F
Sbjct: 249 FHCGTLRDFFSKNQRVQTV--AKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADR 306
Query: 256 LKNLTDLSLRNALITG----TIPFGIGELQMLQILDLSFNNLTGQIPATLFNIDSLEYLF 311
L L G + + +D I + L
Sbjct: 307 LIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLE 366
Query: 312 LGNNSLSG--TLPDQKSENLQKIDLSHNHL 339
+L + + L
Sbjct: 367 QKKKALDEQVSNGRRAHAELDGTLQQAVGQ 396
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 89.1 bits (221), Expect = 1e-18
Identities = 30/289 (10%), Positives = 78/289 (26%), Gaps = 22/289 (7%)
Query: 83 EELVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKELTVL 142
+EL+ + L N + + + ++N + + G + L
Sbjct: 93 QELLVGPSIETLHAANNNISR-VSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYL 149
Query: 143 AFGTNNFSGALPPEL-GNLAKLEQLYIDSCGAGGEIPSTFAKLRNMQTLWASDNPFTGKI 201
N EL + LE L + ++ ++TL S N +
Sbjct: 150 DLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQ-VVFAKLKTLDLSSNKLA-FM 206
Query: 202 PDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLESLQMSD-IYNVSSSLDFVMSLKNLT 260
+ + + + N I +L +LE + ++ + DF + +
Sbjct: 207 GPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQ 265
Query: 261 DLSLRNALITGTIPFGIGELQMLQILDLSFNNLTGQIPATLFNIDSLEYLFLGNNSLSGT 320
++ + + E + + + +L+ S G+
Sbjct: 266 TVAKQT--VKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGS 323
Query: 321 LPDQKS------ENLQKIDLSHNHLS----GTFPLWVNSELQMNLAVNN 359
++ ++ID +++ +
Sbjct: 324 ETERLECERENQARQREIDALKEQYRTVIDQVTLRK-QAKITLEQKKKA 371
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 128 bits (323), Expect = 7e-31
Identities = 57/369 (15%), Positives = 105/369 (28%), Gaps = 42/369 (11%)
Query: 51 PAIVCNCTFDNGATCHITKLRVY----GLNKKGVIPEELVTLQYLTVLKIDQNFFTGPLP 106
P + C + + L+K +P+++ + + N
Sbjct: 1 PGSLNPCI------EVVPNITYQCMDQKLSK---VPDDI--PSSTKNIDLSFNPLKILKS 49
Query: 107 SFIGNLSRLMFLSFSHNDFSGPVPRELGNLKELTVLAFGTNNFSGALPPELGNLAKLEQL 166
N S L +L S + + L L+ L N P L LE L
Sbjct: 50 YSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENL 109
Query: 167 YIDSCGAGGEIPSTFAKLRNMQTLWASDNPFTG-KIPDFIGNWTKLKSLRFQGNSFQGPI 225
+L ++ L + N K+P + N T L + N Q
Sbjct: 110 VAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTIT 169
Query: 226 PSSLSKLASLES------LQMSDIYNVSSSLDFVMSLKNLTDLSLRNALITGTIPFGIGE 279
+ L L + ++ I + + L L L N + + +
Sbjct: 170 VNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHEL-TLR-GNFNSSNIMKTCLQN 227
Query: 280 LQMLQILDLSFNNLTGQIPATLFNIDSLEYLF--------LGNNSLSGTLPD--QKSENL 329
L L + L + +F +E L L + N+
Sbjct: 228 LAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANV 287
Query: 330 QKIDLSHNHLSGTFPLWVNSELQM-NLAVNNFKFDISNISVFPGLNCLQRNFTCNRNA-- 386
+ L+ + + + + Q ++ K + P L L T N+ +
Sbjct: 288 SAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLK-QFPTLD-LPFLKSL--TLTMNKGSIS 343
Query: 387 -PQCKLPSL 394
+ LPSL
Sbjct: 344 FKKVALPSL 352
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 125 bits (317), Expect = 4e-30
Identities = 58/314 (18%), Positives = 95/314 (30%), Gaps = 19/314 (6%)
Query: 79 GVIPEELVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKE 138
+ + L +L+ L + N P L+ L L + +G L
Sbjct: 70 TIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLIT 129
Query: 139 LTVLAFGTNNFSGA-LPPELGNLAKLEQLYIDSCGAGGEIPSTFAKLRNM----QTLWAS 193
L L N LP NL L + + + LR +L S
Sbjct: 130 LKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMS 189
Query: 194 DNPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPS-SLSKLASLESLQMS-----DIYNVS 247
NP I D KL L +GN I L LA L ++ D N+
Sbjct: 190 LNPID-FIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLE 248
Query: 248 S-SLDFVMSLKNLT--DLSLRNALITGTIPFGIGELQMLQILDLSFNNLTGQIPATLFNI 304
+ L ++T + L L + + L+ ++ + +
Sbjct: 249 IFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIK-YLEDVPKHF 307
Query: 305 DSLEYLFLGNNSLSGTLPDQKSENLQKIDLSHNHLSGTFPLWVNSELQ-MNLAVNNFKFD 363
+ L + L P L+ + L+ N S +F L ++L+ N F
Sbjct: 308 -KWQSLSIIRCQLK-QFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFS 365
Query: 364 ISNISVFPGLNCLQ 377
G N L+
Sbjct: 366 GCCSYSDLGTNSLR 379
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 125 bits (315), Expect = 6e-30
Identities = 53/322 (16%), Positives = 98/322 (30%), Gaps = 17/322 (5%)
Query: 48 NNNPAIVCNCTFDNGATCHITKLRVYGLNKKGVIPEELVTLQYLTVLKIDQNFFTGPLPS 107
N I + I + R+ N + L ++ + + L
Sbjct: 244 ERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKY-LED 302
Query: 108 FIGNLSRLMFLSFSHNDFSGPVPRELGNLKELTVLAFGTNNFSGALPPELGNLAKLEQLY 167
+ LS +L LK LT+ G++ + L L L
Sbjct: 303 VP-KHFKWQSLSIIRCQLKQFPTLDLPFLKSLTL-----TMNKGSISFKKVALPSLSYLD 356
Query: 168 IDSCGAGGEIPSTFA--KLRNMQTLWASDNPFTGKIPDFIGNWTKLKSLRFQGNSFQGPI 225
+ +++ +++ L S N + +L+ L FQ ++ +
Sbjct: 357 LSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVT 415
Query: 226 P-SSLSKLASLESLQMSDIYNVSSSLDFVMSLKNLTDLSL-RNALITGTIPFGIGELQML 283
S+ L L L +S + L +L L + N+ T+ L
Sbjct: 416 EFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNL 475
Query: 284 QILDLSFNNLTGQIPATLFNIDSLEYLFLGNNSLSGTLPD--QKSENLQKIDLSHNHLSG 341
LDLS L + L+ L + +N+L + +L +D S N +
Sbjct: 476 TFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIET 535
Query: 342 TFP--LWVNSELQM-NLAVNNF 360
+ L NL N+
Sbjct: 536 SKGILQHFPKSLAFFNLTNNSV 557
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 120 bits (303), Expect = 2e-28
Identities = 62/339 (18%), Positives = 107/339 (31%), Gaps = 43/339 (12%)
Query: 78 KGVIPEELVTLQYLTVLKIDQNFFTG-PLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNL 136
+ + L L L + NF LP++ NL+ L+ + S+N +L L
Sbjct: 117 ASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFL 176
Query: 137 KELTVLAFG---TNNFSGALPPELGNLAKLEQLYIDSCGAGGEIPST-FAKLRNMQTLWA 192
+E + + N + + KL +L + I T L +
Sbjct: 177 RENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRL 236
Query: 193 SDNPFTGKI------PDFIGNWTKL--KSLRFQGNSFQGPIPSSLSKLASLESLQMSDIY 244
F + P + + R + LA++ ++ ++
Sbjct: 237 ILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLA--G 294
Query: 245 NVSSSLDFVMSLKNLTDLSLRNALIT-------------------GTIPFGIGELQMLQI 285
L+ V LS+ + G+I F L L
Sbjct: 295 VSIKYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSY 354
Query: 286 LDLSFNNLTGQIPATLFNID--SLEYLFLGNNSLSGTLPD-QKSENLQKIDLSHNHLSGT 342
LDLS N L+ + ++ SL +L L N + E LQ +D H+ L
Sbjct: 355 LDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRV 414
Query: 343 FPLWVNSELQ----MNLAVNNFKFDISNISVFPGLNCLQ 377
L+ ++++ N K D I F GL L
Sbjct: 415 TEFSAFLSLEKLLYLDISYTNTKIDFDGI--FLGLTSLN 451
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 117 bits (295), Expect = 2e-27
Identities = 51/238 (21%), Positives = 79/238 (33%), Gaps = 11/238 (4%)
Query: 87 TLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFS--GPVPRELGNLKELTVLAF 144
L +L L + N + L L +L S N S G L L
Sbjct: 326 DLPFLKSLTLTMNKGSISFK--KVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDL 383
Query: 145 GTNNFSGALPPELGNLAKLEQLYIDSCGAGGEIP-STFAKLRNMQTLWASDNPFTGKIPD 203
N + L +L+ L S F L + L S
Sbjct: 384 SFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDG 442
Query: 204 FIGNWTKLKSLRFQGNSFQGPIPSS-LSKLASLESLQMSD--IYNVSSSLDFVMSLKNLT 260
T L +L+ GNSF+ S+ + +L L +S + +S + F +L L
Sbjct: 443 IFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGV-F-DTLHRLQ 500
Query: 261 DLSLRNALITGTIPFGIGELQMLQILDLSFNNLTGQIPATLFNIDSLEYLFLGNNSLS 318
L++ + + +L L LD SFN + SL + L NNS++
Sbjct: 501 LLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVA 558
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 121 bits (306), Expect = 2e-28
Identities = 62/356 (17%), Positives = 115/356 (32%), Gaps = 22/356 (6%)
Query: 48 NNNPAIVCNCTFDNGATCHITKLRVYGLNKKGVIPEELVTLQYLTVLKIDQNFFTGPLPS 107
+N TF A + L + + TL+ L VL + N
Sbjct: 249 FHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADE 308
Query: 108 FIGNLSRLMFLSFSHNDFSGPVPRELGNLKELTVLAFGTNNFSGALPPE-LGNLAKLEQL 166
L L L+ S+N L ++ + N+ + + + L KL+ L
Sbjct: 309 AFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIA-IIQDQTFKFLEKLQTL 367
Query: 167 YIDSCGAGGEIPSTFAKLRNMQTLWASDNPFTGKIPDFIGNWTKLKSLRFQGNSFQG-PI 225
+ +T + ++ ++ S N + N + I
Sbjct: 368 DLRDNAL-----TTIHFIPSIPDIFLSGNKLV----TLPKINLTANLIHLSENRLENLDI 418
Query: 226 PSSLSKLASLESLQMSD--IYNVSSSLDFVMSLKNLTDLSLRNALITGTIPFGIGE---- 279
L ++ L+ L ++ + S +L L L ++ +
Sbjct: 419 LYFLLRVPHLQILILNQNRFSSCSGDQTPSE-NPSLEQLFLGENMLQLAWETELCWDVFE 477
Query: 280 -LQMLQILDLSFNNLTGQIPATLF-NIDSLEYLFLGNNSLSGTLPDQKSENLQKIDLSHN 337
L LQ+L L+ N L +P +F ++ +L L L +N L+ + NL+ +D+S N
Sbjct: 478 GLSHLQVLYLNHNYLN-SLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPANLEILDISRN 536
Query: 338 HLSGTFPLWVNSELQMNLAVNNFKFDISNISVFPGLNCLQRNFTCNRNAPQCKLPS 393
L P S +++ N F + + LN C P
Sbjct: 537 QLLAPNPDVFVSLSVLDITHNKFICECELSTFINWLNHTNVTIAGPPADIYCVYPD 592
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 102 bits (257), Expect = 1e-22
Identities = 66/310 (21%), Positives = 105/310 (33%), Gaps = 42/310 (13%)
Query: 111 NLSRLMFLSFSHNDFSGPVPRELGNLKELTVLAFGTNNFSGALPPE-LGNLAKLEQLYID 169
L+ L S N L++L +L G+ + E NL L L +
Sbjct: 22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLG 81
Query: 170 SCGAGGEIPSTFAKLRNMQTLWASDNPFTGKI--PDFIGNWTKLKSLRFQGNSFQG-PIP 226
S P F L ++ L + + + N L L N + +
Sbjct: 82 SSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLH 141
Query: 227 SSLSKLASLESLQMSD--IYNVSSSLDFVMSLKNLTDLSLRNALITGTIPFGIGELQM-- 282
S KL SL+S+ S I+ V + K L+ SL + + G+
Sbjct: 142 PSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPF 201
Query: 283 ----LQILDLSFNNLTGQIPATLFN------------IDSLEYLFLGNNSLS----GTLP 322
L+ILD+S N T I N + G +++ T
Sbjct: 202 RNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFA 261
Query: 323 DQKSENLQKIDLSHNHLS----GTFPLWVNSELQM-NLAVNNFKFDISNI--SVFPGLNC 375
+++ +DLSH + F +L++ NLA N I+ I F GL+
Sbjct: 262 GLARSSVRHLDLSHGFVFSLNSRVFET--LKDLKVLNLAYNK----INKIADEAFYGLDN 315
Query: 376 LQR-NFTCNR 384
LQ N + N
Sbjct: 316 LQVLNLSYNL 325
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 101 bits (253), Expect = 4e-22
Identities = 62/356 (17%), Positives = 119/356 (33%), Gaps = 37/356 (10%)
Query: 74 GLNKKGVIPEELVTLQYLTVLKIDQNFFTG-PLPSFIGNLSRLMFLSFSHNDFSGPVPRE 132
GL+ + L+ LT L + +N L G L+ L + FS N E
Sbjct: 108 GLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHE 167
Query: 133 LGNL--KELTVLAFGTNNFSGALPPELGNLAK------LEQLYIDSCGAGGEIPSTFAK- 183
L L K L+ + N+ + + G LE L + G +I F+
Sbjct: 168 LEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNA 227
Query: 184 -----------LRNMQTLWASDNPFTGKIPDFIGNWTK--LKSLRFQGNSFQGPIPSSLS 230
++ + + + ++ L
Sbjct: 228 ISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFE 287
Query: 231 KLASLESLQMSDIYNVSSSLDFVMSLKNLTDLSLRNALITGTIPFGI-GELQMLQILDLS 289
L L+ L ++ + + L NL L+L L+ + L + +DL
Sbjct: 288 TLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLG-ELYSSNFYGLPKVAYIDLQ 346
Query: 290 FNNLTGQIPATLFNIDSLEYLFLGNNSLSGTLPDQKSENLQKIDLSHNHLSGTFPLWVNS 349
N++ T ++ L+ L L +N+L+ ++ I LS N L + + +
Sbjct: 347 KNHIAIIQDQTFKFLEKLQTLDLRDNALTT---IHFIPSIPDIFLSGNKLVTLPKINLTA 403
Query: 350 ELQMNLAVNNFKFDISNISVFPGLNCLQR------NFT-CNRNAPQCKLPSLCCLH 398
++L+ N + ++ + + LQ F+ C+ + + PSL L
Sbjct: 404 N-LIHLSENRLE-NLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLF 457
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 43.3 bits (102), Expect = 3e-04
Identities = 23/103 (22%), Positives = 37/103 (35%), Gaps = 16/103 (15%)
Query: 284 QILDLSFNNLTGQIPATLFNIDSLEYLFLGNNSLSGTLPD--QKSENLQKIDLSHNHLSG 341
+I F NLT Q+P +++ E L L N + E LQ ++L +
Sbjct: 7 RIAFYRFCNLT-QVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPL 62
Query: 342 TFP---LWVNSELQM-NLAVNNFKFDISNIS--VFPGLNCLQR 378
T L++ +L + I + F GL L
Sbjct: 63 TIDKEAFRNLPNLRILDLGSSK----IYFLHPDAFQGLFHLFE 101
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 114 bits (288), Expect = 4e-27
Identities = 60/290 (20%), Positives = 107/290 (36%), Gaps = 46/290 (15%)
Query: 66 HITKLRVYGLNKKGVIPEELVTLQYLTVLKIDQNFFTGPLPS---------------FIG 110
H+ L N +PE +L+ L V + + P +
Sbjct: 92 HLESLVASC-NSLTELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQ 150
Query: 111 NLSRLMFLSFSHNDFSGPVPRELGNLKELTVLAFGTNNFSGALPPELGNLAKLEQLYIDS 170
N S L + +N +P +L+ + G N PEL NL L +Y D+
Sbjct: 151 NSSFLKIIDVDNNSLKK-LPDLPPSLEFIAA---GNNQLEE--LPELQNLPFLTAIYADN 204
Query: 171 CGAGGEIPSTFAKLRNMQTLWASDNPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLS 230
+ +++++ A +N ++P+ + N L ++ N + +P
Sbjct: 205 N----SLKKLPDLPLSLESIVAGNNILE-ELPE-LQNLPFLTTIYADNNLLKT-LPDLPP 257
Query: 231 KLASLESLQMSDIYNVSSSLDFVMSLKNLTDLSLRNALITGTIPFGIGELQMLQILDLSF 290
SLE+L + D N + L ++LT L + + + + L L+ S
Sbjct: 258 ---SLEALNVRD--NYLTDLP--ELPQSLTFLDVSENIFS-GLSELPPNLY---YLNASS 306
Query: 291 NNLTGQIPATLFNIDSLEYLFLGNNSLSGTLPDQKSENLQKIDLSHNHLS 340
N + + SLE L + NN L LP L+++ S NHL+
Sbjct: 307 NEIR-SLCDLP---PSLEELNVSNNKLI-ELPAL-PPRLERLIASFNHLA 350
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 112 bits (282), Expect = 2e-26
Identities = 59/287 (20%), Positives = 100/287 (34%), Gaps = 55/287 (19%)
Query: 81 IPEELVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKELT 140
+P+ +L+++ N LP NL L + +N +P +L+ +
Sbjct: 168 LPDLPPSLEFIA---AGNNQLEE-LPEL-QNLPFLTAIYADNNSLKK-LPDLPLSLESIV 221
Query: 141 VLAFGTNNFSGALPPELGNLAKLEQLYIDSCGAGGEIPSTFAKLRNMQTLWASDNPFTGK 200
G N PEL NL L +Y D+ + + +++ L DN T
Sbjct: 222 A---GNNILE--ELPELQNLPFLTTIYADNN----LLKTLPDLPPSLEALNVRDNYLT-D 271
Query: 201 IPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLESLQMSDIYNVSSSLDFVMSLKNLT 260
+P+ + T L + + +L L S N SL +L
Sbjct: 272 LPELPQSLTFLDVSENIFSG----LSELPP---NLYYLNASS--NEIRSLCD--LPPSLE 320
Query: 261 DLSLRNALITGTIPFGIGELQMLQILDLSFNNLTGQIPATLFNIDSLEYLFLGNNSLSGT 320
+L++ N + +P L+ L SFN+L ++P N L+ L + N L
Sbjct: 321 ELNVSNNKLI-ELPALPPRLE---RLIASFNHLA-EVPELPQN---LKQLHVEYNPLR-E 371
Query: 321 LPDQKSE------------------NLQKIDLSHNHLSGTFPLWVNS 349
PD NL+++ + N L FP S
Sbjct: 372 FPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLR-EFPDIPES 417
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 108 bits (273), Expect = 4e-25
Identities = 52/293 (17%), Positives = 97/293 (33%), Gaps = 39/293 (13%)
Query: 81 IPEELVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKELT 140
I V+ +L + T +P N+ + +++ P G +E+
Sbjct: 3 INPRNVSNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMA 61
Query: 141 VLAFGTNNFSG------------ALPPELGNLAKLEQLYIDSCGAGGEIPSTFAKLRNMQ 188
V +LP + LE L E+P L+++
Sbjct: 62 VSRLRDCLDRQAHELELNNLGLSSLPELPPH---LESLVASCNSL-TELPELPQSLKSLL 117
Query: 189 TLWASDNPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLESLQMSDIYNVSS 248
+ + P L+ L N + +P L + L+ + + + N
Sbjct: 118 VDNNNLKALSDLPP-------LLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDN--NSLK 166
Query: 249 SLDFVMSLKNLTDLSLRNALITGTIPFGIGELQMLQILDLSFNNLTGQIPATLFNIDSLE 308
L +L ++ N + +P + L L + N+L ++P + LE
Sbjct: 167 KLPD--LPPSLEFIAAGNNQLE-ELPE-LQNLPFLTAIYADNNSLK-KLPDLPLS---LE 218
Query: 309 YLFLGNNSLSGTLPDQKS-ENLQKIDLSHNHLSGTFPLWVNSELQMNLAVNNF 360
+ GNN L LP+ ++ L I +N L T P S +N+ N
Sbjct: 219 SIVAGNNILE-ELPELQNLPFLTTIYADNNLLK-TLPDLPPSLEALNVRDNYL 269
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 105 bits (264), Expect = 4e-24
Identities = 53/262 (20%), Positives = 90/262 (34%), Gaps = 39/262 (14%)
Query: 81 IPEELVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKELT 140
EL L +LT + D N LP +L L + N + +P +L L
Sbjct: 229 ELPELQNLPFLTTIYADNNLLKT-LPDLPPSLEAL---NVRDNYLTD-LPELPQSLTFLD 283
Query: 141 VLAFGTNNFSGALPPELGNLAKLEQLYIDSCGAGGEIPSTFAKLRNMQTLWASDNPFTGK 200
V N L NL L S EI S +++ L S+N +
Sbjct: 284 VS----ENIFSGLSELPPNL---YYLNASSN----EIRSLCDLPPSLEELNVSNNKLI-E 331
Query: 201 IPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLESLQMSDIYNVSSSLDFVMSLKNLT 260
+P L+ L N +P +L+ L + YN +++
Sbjct: 332 LPALPPR---LERLIASFNHLAE-VPELPQ---NLKQLHVE--YNPLREFP--DIPESVE 380
Query: 261 DLSLRNALITGTIPFGIGELQMLQILDLSFNNLTGQIPATLFNIDSLEYLFLGNNSLSG- 319
DL + + L +P Q L+ L + N L + P +S+E L + + +
Sbjct: 381 DLRMNSHLAE--VP---ELPQNLKQLHVETNPLR-EFPD---IPESVEDLRMNSERVVDP 431
Query: 320 -TLPDQKSENLQKIDLSHNHLS 340
+ ++ L+ H+H
Sbjct: 432 YEFAHETTDKLEDDVFEHHHHH 453
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 104 bits (262), Expect = 8e-24
Identities = 52/259 (20%), Positives = 88/259 (33%), Gaps = 39/259 (15%)
Query: 129 VPRELGNLKELTVLAFGTNNFSGALPPELGNLAKLEQLYIDSCGAGGEIPSTFAKLRNMQ 188
+P E N+K T + + PP G ++ + C R
Sbjct: 26 MPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDC-----------LDRQAH 74
Query: 189 TLWASDNPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLESLQMSDIYNVSS 248
L ++ + +P+ + L+SL NS +P L SL + S
Sbjct: 75 ELELNNLGLS-SLPELPPH---LESLVASCNSLT-ELPELPQSLKSLLVDNNN--LKALS 127
Query: 249 SLDFVMSLKNLTDLSLRNALITGTIPFGIGELQMLQILDLSFNNLTGQIPATLFNIDSLE 308
L L L + N + +P + L+I+D+ N+L ++P + LE
Sbjct: 128 DL-----PPLLEYLGVSNNQLE-KLP-ELQNSSFLKIIDVDNNSLK-KLPDLPPS---LE 176
Query: 309 YLFLGNNSLSGTLPD-QKSENLQKIDLSHNHLSGTFPLWVN-SELQMNLAVNNFKFDISN 366
++ GNN L LP+ Q L I +N L L ++ + NN +
Sbjct: 177 FIAAGNNQLE-ELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAG---NN---ILEE 229
Query: 367 ISVFPGLNCLQR-NFTCNR 384
+ L L N
Sbjct: 230 LPELQNLPFLTTIYADNNL 248
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 107 bits (270), Expect = 3e-25
Identities = 68/346 (19%), Positives = 117/346 (33%), Gaps = 41/346 (11%)
Query: 48 NNNPAIVCNCTFDNGATCHITKLRVYGLNK---KGVIPEELVTLQYLTVLKIDQNFFTGP 104
+ + + + + ++ + + L + + + +L ++
Sbjct: 25 DVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEI 84
Query: 105 LPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKELTVLAFGTNNFSGALPPEL-GNLAKL 163
+ L N P N+ LTVL N+ S +LP + N KL
Sbjct: 85 DTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKL 143
Query: 164 EQLYIDSCGAGGEI----PSTFAKLRNMQTLWASDNPFTGKIPDFIGNWTKLKSLRFQGN 219
L + + + TF ++Q L S N T + L N
Sbjct: 144 TTLSMSNN----NLERIEDDTFQATTSLQNLQLSSNRLT-HVDL--SLIPSLFHANVSYN 196
Query: 220 SFQGPIPSSLSKLASLESLQMSDIYNVSSSLDFVMSLKNLTDLSLRNALITGTIPFGIGE 279
S+L+ ++E L S +N + + LT L L++ +T +
Sbjct: 197 LL-----STLAIPIAVEELDAS--HNSINVVRG-PVNVELTILKLQHNNLT-DTA-WLLN 246
Query: 280 LQMLQILDLSFNNLTGQIPATLF-NIDSLEYLFLGNNSLSGTLPD--QKSENLQKIDLSH 336
L +DLS+N L +I F + LE L++ NN L L Q L+ +DLSH
Sbjct: 247 YPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSH 304
Query: 337 NHLS----GTFPLWVNSELQM-NLAVNNFKFDISNISVFPGLNCLQ 377
NHL L+ L N+ + +S L L
Sbjct: 305 NHLLHVERNQPQF---DRLENLYLDHNSIV-TLK-LSTHHTLKNLT 345
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 106 bits (267), Expect = 8e-25
Identities = 47/266 (17%), Positives = 96/266 (36%), Gaps = 23/266 (8%)
Query: 81 IPEELVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKELT 140
I L + ID L+ ++F ++ L + +++
Sbjct: 13 IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVE 72
Query: 141 VLAFGTNNFSGALPPE-LGNLAKLEQLYIDSCGAGGEI----PSTFAKLRNMQTLWASDN 195
+L + +++LY+ I P F + + L N
Sbjct: 73 LLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFN----AIRYLPPHVFQNVPLLTVLVLERN 127
Query: 196 PFTGKIPDFI-GNWTKLKSLRFQGNSFQGPIPSSLSKLASLESLQMSDIYNVSSSLDFVM 254
+ +P I N KL +L N+ + + SL++LQ+S N + +D +
Sbjct: 128 DLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLS--SNRLTHVDLSL 184
Query: 255 SLKNLTDLSLRNALITGTIPFGIGELQMLQILDLSFNNLTGQIPATLFNIDSLEYLFLGN 314
+ +L ++ L++ + ++ LD S N++ + + L L L +
Sbjct: 185 -IPSLFHANVSYNLLS-----TLAIPIAVEELDASHNSIN-VVRGPVNV--ELTILKLQH 235
Query: 315 NSLSGTLPDQKSENLQKIDLSHNHLS 340
N+L+ T L ++DLS+N L
Sbjct: 236 NNLTDTAWLLNYPGLVEVDLSYNELE 261
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 89.7 bits (223), Expect = 4e-19
Identities = 44/258 (17%), Positives = 86/258 (33%), Gaps = 32/258 (12%)
Query: 143 AFGTNNFSGALPPELGNLAKLEQLYIDSCGAGGEIPSTFAKLRNMQTLWASDNPFTGKIP 202
+ L ++ID L N + + ++
Sbjct: 3 VKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPA 62
Query: 203 DFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLESLQMSD--IYNVSSSLDFVMSLKNLT 260
+ ++ +++ L + + + +++ L M I + + F ++ LT
Sbjct: 63 ALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHV-FQ-NVPLLT 120
Query: 261 DLSLRNALITGTIPFGI-GELQMLQILDLSFNNLTGQIPATLF-NIDSLEYLFLGNNSLS 318
L L ++ ++P GI L L +S NNL +I F SL+ L L +N L+
Sbjct: 121 VLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLT 178
Query: 319 GTLPDQKSENLQKIDLSHNHLS------------------GTFPLWVNSELQM-NLAVNN 359
+ +L ++S+N LS VN EL + L NN
Sbjct: 179 -HVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNN 237
Query: 360 FKFDISNISVFPGLNCLQ 377
+++ + L
Sbjct: 238 ----LTDTAWLLNYPGLV 251
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 71.6 bits (176), Expect = 2e-13
Identities = 31/166 (18%), Positives = 65/166 (39%), Gaps = 21/166 (12%)
Query: 225 IPSSLSKLASLESLQMSDIYNVSSSLDFVMSLKNLTDLSLRNALITGTIPFGI-GELQML 283
I S+L + + ++L N ++ +N+ + +P + + +
Sbjct: 13 IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQV 71
Query: 284 QILDLSFNNLTGQIPATLF-NIDSLEYLFLGNNSLSGTLPD---QKSENLQKIDLSHNHL 339
++L+L+ + +I F +++ L++G N++ LP Q L + L N L
Sbjct: 72 ELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDL 129
Query: 340 S----GTFPLWVNSELQ-MNLAVNNFKFDISNI--SVFPGLNCLQR 378
S G F +L ++++ NN + I F LQ
Sbjct: 130 SSLPRGIF--HNTPKLTTLSMSNNN----LERIEDDTFQATTSLQN 169
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 109 bits (274), Expect = 6e-25
Identities = 59/269 (21%), Positives = 103/269 (38%), Gaps = 38/269 (14%)
Query: 91 LTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKELTVLAFGTNNFS 150
VL + ++ T LP + + L N+ + +P L+ L V + N
Sbjct: 42 NAVLNVGESGLTT-LPDCLPA--HITTLVIPDNNLTS-LPALPPELRTLEV----SGNQL 93
Query: 151 GALPPELGNLAKLEQLYIDSCGAGGEIPSTFAKLRNMQTLWASDNPFTGKIPDFIGNWTK 210
+LP L +L +P+ + LW N T +P
Sbjct: 94 TSLPVLPPGLLELSIFSNPLT----HLPAL---PSGLCKLWIFGNQLT-SLPVLPPG--- 142
Query: 211 LKSLRFQGNSFQGPIPSSLSKLASLESLQMSDIYNVSSSLDFVMSLKNLTDLSLRNALIT 270
L+ L N +P+ S L L + N +SL M L +LS+ + +
Sbjct: 143 LQELSVSDNQLAS-LPALPS---ELCKLWAYN--NQLTSLP--MLPSGLQELSVSDNQLA 194
Query: 271 GTIPFGIGELQMLQILDLSFNNLTGQIPATLFNIDSLEYLFLGNNSLSGTLPDQKSENLQ 330
++P EL L + N LT +PA L+ L + N L+ +LP S L+
Sbjct: 195 -SLPTLPSELYKLWAYN---NRLT-SLPA---LPSGLKELIVSGNRLT-SLPVLPS-ELK 244
Query: 331 KIDLSHNHLSGTFPLWVNSELQMNLAVNN 359
++ +S N L+ + P+ + L +++ N
Sbjct: 245 ELMVSGNRLT-SLPMLPSGLLSLSVYRNQ 272
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 97.3 bits (242), Expect = 5e-21
Identities = 59/296 (19%), Positives = 94/296 (31%), Gaps = 50/296 (16%)
Query: 66 HITKLRVYGL--NKKGVIPEELVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHN 123
+LR + N+ +P L L++ LP+ L +L N
Sbjct: 79 LPPELRTLEVSGNQLTSLPVLPPGLLELSIFSNPLT----HLPALPSGLCKL---WIFGN 131
Query: 124 DFSGPVPRELGNLKELTVLAFGTNNFSGALPPELGNLAKLE----QLYIDSCGAGGEIPS 179
+ +P L+EL+V +N +LP L KL QL +P
Sbjct: 132 QLTS-LPVLPPGLQELSVS----DNQLASLPALPSELCKLWAYNNQL--------TSLPM 178
Query: 180 TFAKLRNMQTLWASDNPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKL------- 232
+Q L SDN +P KL + + S +PS L +L
Sbjct: 179 L---PSGLQELSVSDNQLA-SLPTLPSELYKLWAYNNRLTSLP-ALPSGLKELIVSGNRL 233
Query: 233 -------ASLESLQMSDIYNVSSSLDFVMSLKNLTDLSLRNALITGTIPFGIGELQMLQI 285
+ L+ L +S N +SL M L LS+ +T +P + L
Sbjct: 234 TSLPVLPSELKELMVSG--NRLTSLP--MLPSGLLSLSVYRNQLT-RLPESLIHLSSETT 288
Query: 286 LDLSFNNLTGQIPATLFNIDSLEYLFLGNNSLSGTLPDQKSENLQKIDLSHNHLSG 341
++L N L+ + L I S E + + L
Sbjct: 289 VNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWLVP 344
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 68.0 bits (166), Expect = 7e-12
Identities = 28/132 (21%), Positives = 47/132 (35%), Gaps = 17/132 (12%)
Query: 209 TKLKSLRFQGNSFQGPIPSSLSKLASLESLQMSDIYNVSSSLDFVMSLKNLTDLSLRNAL 268
L + +P L A + +L + D N +SL L L +
Sbjct: 40 NGNAVLNVGESGLTT-LPDCL--PAHITTLVIPD--NNLTSLPA--LPPELRTLEVSGNQ 92
Query: 269 ITGTIPFGIGELQMLQILDLSFNNLTGQIPATLFNIDSLEYLFLGNNSLSGTLPDQKSEN 328
+T ++P L L I +L L L++ N L+ +LP
Sbjct: 93 LT-SLPVLPPGLLELSIFSNPLTHLPAL-------PSGLCKLWIFGNQLT-SLPVL-PPG 142
Query: 329 LQKIDLSHNHLS 340
LQ++ +S N L+
Sbjct: 143 LQELSVSDNQLA 154
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 109 bits (273), Expect = 8e-25
Identities = 63/304 (20%), Positives = 108/304 (35%), Gaps = 31/304 (10%)
Query: 48 NNNPAIVCNCTFDNGATCHITKLRVYGL--NKKGVIPEE-LVTLQYLTVLKIDQNFFTGP 104
+ + + + + ++ + +P L + + + +L ++
Sbjct: 31 DVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEI 90
Query: 105 LPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKELTVLAFGTNNFSGALPPEL-GNLAKL 163
+ L N P N+ LTVL N+ S +LP + N KL
Sbjct: 91 DTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKL 149
Query: 164 EQLYIDSCGAGGEI----PSTFAKLRNMQTLWASDNPFTGKIPDFIGNWTKLKSLRFQGN 219
L + + + TF ++Q L S N T + L N
Sbjct: 150 TTLSMSNN----NLERIEDDTFQATTSLQNLQLSSNRLT-HVDL--SLIPSLFHANVSYN 202
Query: 220 SFQGPIPSSLSKLASLESLQMSDIYNVSSSLDFVMSLKNLTDLSLRNALITGTIPFGIGE 279
S+L+ ++E L S +N + + LT L L++ +T +
Sbjct: 203 LL-----STLAIPIAVEELDAS--HNSINVVRG-PVNVELTILKLQHNNLT-DTA-WLLN 252
Query: 280 LQMLQILDLSFNNLTGQIPATLF-NIDSLEYLFLGNNSLSGTLPD--QKSENLQKIDLSH 336
L +DLS+N L +I F + LE L++ NN L L Q L+ +DLSH
Sbjct: 253 YPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSH 310
Query: 337 NHLS 340
NHL
Sbjct: 311 NHLL 314
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 105 bits (263), Expect = 1e-23
Identities = 47/266 (17%), Positives = 95/266 (35%), Gaps = 23/266 (8%)
Query: 81 IPEELVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKELT 140
I L + ID L+ ++F ++ L + +++
Sbjct: 19 IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVE 78
Query: 141 VLAFGTNNFSGALPPE-LGNLAKLEQLYIDSCGAGGEI----PSTFAKLRNMQTLWASDN 195
+L + +++LY+ I P F + + L N
Sbjct: 79 LLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFN----AIRYLPPHVFQNVPLLTVLVLERN 133
Query: 196 PFTGKIPDFI-GNWTKLKSLRFQGNSFQGPIPSSLSKLASLESLQMSDIYNVSSSLDFVM 254
+ +P I N KL +L N+ + + SL++LQ+S N + +D
Sbjct: 134 DLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLS--SNRLTHVDL-S 189
Query: 255 SLKNLTDLSLRNALITGTIPFGIGELQMLQILDLSFNNLTGQIPATLFNIDSLEYLFLGN 314
+ +L ++ L++ + ++ LD S N++ + + L L L +
Sbjct: 190 LIPSLFHANVSYNLLS-----TLAIPIAVEELDASHNSIN-VVRGPVNV--ELTILKLQH 241
Query: 315 NSLSGTLPDQKSENLQKIDLSHNHLS 340
N+L+ T L ++DLS+N L
Sbjct: 242 NNLTDTAWLLNYPGLVEVDLSYNELE 267
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 86.1 bits (213), Expect = 1e-17
Identities = 44/249 (17%), Positives = 86/249 (34%), Gaps = 32/249 (12%)
Query: 153 LPPELGNLAKLEQLYIDSCGAGGEIPSTFAKLRNMQTLWASDNPFTGKIPDFIGNWTKLK 212
+ L ++ID L N + + ++ + ++ +++
Sbjct: 19 IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVE 78
Query: 213 SLRFQGNSFQGPIPSSLSKLASLESLQMSD--IYNVSSSLDFVMSLKNLTDLSLRNALIT 270
L + + + +++ L M I + + F ++ LT L L ++
Sbjct: 79 LLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHV-FQ-NVPLLTVLVLERNDLS 136
Query: 271 GTIPFGI-GELQMLQILDLSFNNLTGQIPATLF-NIDSLEYLFLGNNSLSGTLPDQKSEN 328
++P GI L L +S NNL +I F SL+ L L +N L+ + +
Sbjct: 137 -SLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLT-HVDLSLIPS 193
Query: 329 LQKIDLSHNHLSG------------------TFPLWVNSELQ-MNLAVNNFKFDISNISV 369
L ++S+N LS VN EL + L NN +++ +
Sbjct: 194 LFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNN----LTDTAW 249
Query: 370 FPGLNCLQR 378
L
Sbjct: 250 LLNYPGLVE 258
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 105 bits (265), Expect = 3e-24
Identities = 61/338 (18%), Positives = 114/338 (33%), Gaps = 58/338 (17%)
Query: 55 CNCTFDNG-ATCHITKLRVYGLNKKGVIPEELVTLQYLTVLKIDQNFFTGPLPSFIGNLS 113
C C+ + CH + +PE + +L + +N +
Sbjct: 7 CECSAQDRAVLCHRKRFVA--------VPEGI--PTETRLLDLGKNRIKTLNQDEFASFP 56
Query: 114 RLMFLSFSHNDFSGPVPRELGNLKELTVLAFGTNNFSGALPPE-LGNLAKLEQLYIDSCG 172
L L + N S P NL L L +N +P L+ L +L I
Sbjct: 57 HLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDISENK 115
Query: 173 AGGEIPSTFAKLRNMQTLWASDNPFTGKIPD--FIGNWTKLKSLRFQGNSFQGPIPSSLS 230
+ F L N+++L DN I F G L+ L + + +LS
Sbjct: 116 IVILLDYMFQDLYNLKSLEVGDNDLV-YISHRAFSG-LNSLEQLTLEKCNLTSIPTEALS 173
Query: 231 KLASLESLQMSDIYNVSSSLDFVMSLKNLTDLSLRNALITGTIPFGIGELQMLQILDLSF 290
L L L++ +++ + D S + L L++L++S
Sbjct: 174 HLHGLIVLRLRH-----------LNINAIRDYSFKR-------------LYRLKVLEISH 209
Query: 291 NNLTGQIPATLFNIDSLEYLFLGNNSLSGTLPD---QKSENLQKIDLSHNHLS----GTF 343
+ +L L + + +L+ +P + L+ ++LS+N +S
Sbjct: 210 WPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPISTIEGSML 268
Query: 344 PLWVN-SELQMNLAVNNFKFDISNIS--VFPGLNCLQR 378
+ E+Q+ ++ + F GLN L+
Sbjct: 269 HELLRLQEIQLV---GG---QLAVVEPYAFRGLNYLRV 300
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 98.3 bits (245), Expect = 1e-21
Identities = 62/270 (22%), Positives = 93/270 (34%), Gaps = 20/270 (7%)
Query: 82 PEELVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKELTV 141
P L L L + N LS L L S N + +L L
Sbjct: 73 PGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKS 132
Query: 142 LAFGTNNFSGALPPE-LGNLAKLEQLYIDSCGAGGEIPS-TFAKLRNMQTLWASDNPFTG 199
L G N+ + L LEQL ++ C IP+ + L + L
Sbjct: 133 LEVGDNDLV-YISHRAFSGLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLNIN- 189
Query: 200 KIPD--FIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLESLQMSD--IYNVSSSLDFVMS 255
I D F +LK L + + + +L SL ++ + V V
Sbjct: 190 AIRDYSFKRL-YRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLA--VRH 246
Query: 256 LKNLTDLSLRNALITGTIPFGI-GELQMLQILDLSFNNLTGQIPATLF-NIDSLEYLFLG 313
L L L+L I+ TI + EL LQ + L L + F ++ L L +
Sbjct: 247 LVYLRFLNLSYNPIS-TIEGSMLHELLRLQEIQLVGGQLA-VVEPYAFRGLNYLRVLNVS 304
Query: 314 NNSLSGTLPD---QKSENLQKIDLSHNHLS 340
N L+ TL + NL+ + L N L+
Sbjct: 305 GNQLT-TLEESVFHSVGNLETLILDSNPLA 333
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 105 bits (265), Expect = 7e-24
Identities = 57/319 (17%), Positives = 98/319 (30%), Gaps = 18/319 (5%)
Query: 81 IPEELVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKELT 140
IP+ L L + N + L L S + +L L+
Sbjct: 22 IPDNLPF--STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLS 79
Query: 141 VLAFGTNNFSGALPPELGNLAKLEQLYIDSCGAGGEIPSTFAKLRNMQTLWASDNPFT-G 199
L N L+ L++L L+ ++ L + N
Sbjct: 80 TLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF 139
Query: 200 KIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLESLQMSDI--YNVSSSLD-FVMSL 256
K+P++ N T L+ L N Q + L L + L +S N + +
Sbjct: 140 KLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE 199
Query: 257 KNLTDLSLRNALITGTIPFG-IGELQMLQILDLSFNNLTGQIPATLFNIDSLEYLFLGNN 315
L L+LRN + + I L L++ L + F+ +LE L
Sbjct: 200 IRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGL----C 255
Query: 316 SLSGTLPDQKSENLQKIDLSHNHLSGTFPLWVNSELQMNLAVNNFKFDISNISVFPGLNC 375
+L+ L +D + + F + + V+ + + S G
Sbjct: 256 NLTIEEFR-----LAYLDYYLDDIIDLF--NCLTNVSSFSLVSVTIERVKDFSYNFGWQH 308
Query: 376 LQRNFTCNRNAPQCKLPSL 394
L+ P KL SL
Sbjct: 309 LELVNCKFGQFPTLKLKSL 327
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 101 bits (253), Expect = 2e-22
Identities = 67/348 (19%), Positives = 116/348 (33%), Gaps = 30/348 (8%)
Query: 10 LNSILQQWDAPAVPLWNISGNPCSGSALNATDSEFESPNNNPAIVCNCTFDNGATCHITK 69
L + + + ++G EF + N + + I +
Sbjct: 207 LRNNFDSLNVMKTCIQGLAGL----EVHRLVLGEFRNEGNLEKFDKS-ALEGLCNLTIEE 261
Query: 70 LRVYGLNKKG-VIPEELVTLQYLTVLKIDQNFFTGPLP-SFIGNLSRLMFLSFSHNDFSG 127
R+ L+ I + L ++ + S+ L ++ F
Sbjct: 262 FRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPT 321
Query: 128 PVPRELGNLKELTVLAFGTNNFSGALPPELGNLAKLEQLYIDSCG--AGGEIPSTFAKLR 185
LK L L F +N A +L LE L + G G +
Sbjct: 322 ------LKLKSLKRLTFTSNKGGNA--FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTT 373
Query: 186 NMQTLWASDNPFTGKIPDFIGNWTKLKSLRFQGNSFQG-PIPSSLSKLASLESLQMSDIY 244
+++ L S N + +L+ L FQ ++ + S L +L L +S +
Sbjct: 374 SLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDIS--H 430
Query: 245 NVSSSL--DFVMSLKNLTDLSLRNALITGTIPFGI-GELQMLQILDLSFNNLTGQIPATL 301
+ L +L L + I EL+ L LDLS L Q+ T
Sbjct: 431 THTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTA 489
Query: 302 F-NIDSLEYLFLGNNSLSGTLPD---QKSENLQKIDLSHNHLSGTFPL 345
F ++ SL+ L + +N L ++PD + +LQKI L N + P
Sbjct: 490 FNSLSSLQVLNMASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 95.9 bits (239), Expect = 1e-20
Identities = 67/342 (19%), Positives = 113/342 (33%), Gaps = 45/342 (13%)
Query: 76 NKKGVIPEELVTLQYLTVLKIDQNFFTGPLPS-FIGNLSRLMFLS------FSHNDFSGP 128
N I L L + NF + + I L+ L + +
Sbjct: 187 NPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKF 246
Query: 129 VPRELGNLKELTVLAF---GTNNFSGALPPELGNLAKLEQLYIDSCGAGGEIPS------ 179
L L LT+ F + + + L + + S +
Sbjct: 247 DKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVT-IERVKDFSYNFG 305
Query: 180 --------------TFAKLRNMQTLWASDNPFTGKIPDFIGNWTKLKSLRFQGN--SFQG 223
KL++++ L + N + L+ L N SF+G
Sbjct: 306 WQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGG-NAFSEVDL-PSLEFLDLSRNGLSFKG 363
Query: 224 PIPSSLSKLASLESLQMSDIYNVSSSLDFVMSLKNLTDLSLRNALITGTIPFGI-GELQM 282
S SL+ L +S ++ S +F + L+ L L +++ + F + L+
Sbjct: 364 CCSQSDFGTTSLKYLDLSFNGVITMSSNF-LGLEQLEHLDFQHSNLKQMSEFSVFLSLRN 422
Query: 283 LQILDLSFNNLTGQIPATLFNIDSLEYLFLGNNSLSGTLPD---QKSENLQKIDLSHNHL 339
L LD+S + + SLE L + NS + NL +DLS L
Sbjct: 423 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL 482
Query: 340 SGTFPLWVN--SELQ-MNLAVNNFKFDISNISVFPGLNCLQR 378
P N S LQ +N+A N K + + +F L LQ+
Sbjct: 483 EQLSPTAFNSLSSLQVLNMASNQLKS-VPD-GIFDRLTSLQK 522
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 90.9 bits (226), Expect = 4e-19
Identities = 57/310 (18%), Positives = 99/310 (31%), Gaps = 46/310 (14%)
Query: 26 NISGNPCSGSALNATDSEFES------PNNNPAIVCNCTFDNGATCHITKLRVYGLNKKG 79
++ + + + + V + +++ G L +
Sbjct: 263 RLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFG----WQHLELVNCKFGQ 318
Query: 80 VIPEELVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHND--FSGPVPRELGNLK 137
+L +L+ LT N S + +L L FL S N F G +
Sbjct: 319 FPTLKLKSLKRLT---FTSNKGGN-AFSEV-DLPSLEFLDLSRNGLSFKGCCSQSDFGTT 373
Query: 138 ELTVLAFGTNNFSGALPPELGNLAKLEQLYIDSCGAGGEIP-STFAKLRNMQTLWASDNP 196
L L N + L +LE L S F LRN+ L S
Sbjct: 374 SLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH 432
Query: 197 FTGKIPDFIGNWTKLKSLRFQGNSFQGPIPS-SLSKLASLESLQMSDIYNVSSSLDFVMS 255
+ L+ L+ GNSFQ ++L +L L +S
Sbjct: 433 TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS--QC---------Q 481
Query: 256 LKNLTDLSLRNALITGTIPFGIGELQMLQILDLSFNNLTGQIPATLF-NIDSLEYLFLGN 314
L+ L+ + + L LQ+L+++ N L +P +F + SL+ ++L
Sbjct: 482 LEQLSPTAFNS-------------LSSLQVLNMASNQLK-SVPDGIFDRLTSLQKIWLHT 527
Query: 315 NSLSGTLPDQ 324
N + P
Sbjct: 528 NPWDCSCPRI 537
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 104 bits (260), Expect = 3e-23
Identities = 49/350 (14%), Positives = 117/350 (33%), Gaps = 32/350 (9%)
Query: 48 NNNPAIVCNCTFDNGATCHITKLRVYGLNKKGVIPEELVTLQYLTVLKIDQNFFTGPLPS 107
+ A + D + L + N L + + +K +
Sbjct: 181 LSESAFLLEIFADI--LSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDE 238
Query: 108 FIGNLSRLMFLSFSHNDFSGPVPRELGNLKELTVLAFGTNNFSGALPPELGNLAKLEQLY 167
L +L+ ++ + + F + + +L+
Sbjct: 239 SFNELLKLLRYILELSEVE------FDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLH 292
Query: 168 IDSCGAGGEIPSTFAKLRNMQTLWASDNPFTGKIPDFIGNWTKLKSLRFQGNSFQ---GP 224
I ++ + ++ L ++ + ++ F + L+ L N
Sbjct: 293 IPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLK 352
Query: 225 IPSSLSKLASLESLQMSD--IYNVSSSLDFVMSLKNLTDLSLRNALITGTIPFGIGELQM 282
+ SL++L +S + ++ + + +++LKNLT L + +P +
Sbjct: 353 NSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEK 411
Query: 283 LQILDLSFNNLTGQIPATLFNIDSLEYLFLGNNSLSGTLPDQKSENLQKIDLSHNHLSGT 342
++ L+LS + + + +LE L + NN+L + LQ++ +S N L
Sbjct: 412 MRFLNLSSTGIR-VVKTCIP--QTLEVLDVSNNNLD-SFS-LFLPRLQELYISRNKLKTL 466
Query: 343 FPLWVNSELQ-MNLAVNNFKFDISNIS--VFPGLNCLQR------NFTCN 383
+ L M ++ N + ++ +F L LQ+ + C+
Sbjct: 467 PDASLFPVLLVMKISRNQ----LKSVPDGIFDRLTSLQKIWLHTNPWDCS 512
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 100 bits (251), Expect = 3e-22
Identities = 53/315 (16%), Positives = 98/315 (31%), Gaps = 28/315 (8%)
Query: 54 VCNCTFDN------GATCHITKLRVYGLNKKGVIPEELVTLQYLTVLKIDQNFFTGPLPS 107
VC+ + G T + L + + +L L VL + +
Sbjct: 9 VCDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGD 68
Query: 108 FIGNLSRLMFLSFSHNDFSGPVPRELGNLKELTVLAFGTNNFSG-ALPPELGNLAKLEQL 166
+L L L S N S G L L L N + + NL L+ L
Sbjct: 69 AFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTL 128
Query: 167 YIDSCGAGGEIP-STFAKLRNMQTLWASDNPFTGKIPDFIGNWTKLKSLRFQGNSFQGPI 225
I + EI FA L ++ L + + + L + +
Sbjct: 129 RIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLL 188
Query: 226 PSSLSKLASLESLQMSDIY---NVSSSLDFVMSLKNLTDLSLRNALITG-------TIPF 275
L+S+ L++ D S L + L+ R +++T +
Sbjct: 189 EIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLR 248
Query: 276 GIGELQMLQILDLSFNNLTGQIPATLFNID--------SLEYLFLGNNSLSGTLPD--QK 325
I EL ++ D + N L P+ + ++ L + L L
Sbjct: 249 YILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSL 308
Query: 326 SENLQKIDLSHNHLS 340
E +++I + ++ +
Sbjct: 309 LEKVKRITVENSKVF 323
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 93.3 bits (232), Expect = 7e-20
Identities = 50/267 (18%), Positives = 96/267 (35%), Gaps = 18/267 (6%)
Query: 65 CHITKLRVYGLNKKGVIPEEL-VTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHN 123
C + L + ++ V+ E V + L I Q + L + L ++ ++ ++
Sbjct: 261 CTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENS 320
Query: 124 DFSGPVPRELGNLKELTVLAFGTNNFSGALPPE---LGNLAKLEQLYIDSCGAG--GEIP 178
+LK L L N G L+ L + +
Sbjct: 321 KVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTG 380
Query: 179 STFAKLRNMQTLWASDNPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLESL 238
L+N+ +L S N F +PD K++ L + + + + +LE L
Sbjct: 381 EILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRV-VKTCI--PQTLEVL 436
Query: 239 QMSDIYNVSSSLDFVMSLKNLTDLSLRNALITGTIPFGIGELQMLQILDLSFNNLTGQIP 298
+S N S + L L +L + + T+P +L ++ +S N L +P
Sbjct: 437 DVS--NNNLDSFS--LFLPRLQELYISRNKLK-TLPDASL-FPVLLVMKISRNQLK-SVP 489
Query: 299 ATLF-NIDSLEYLFLGNNSLSGTLPDQ 324
+F + SL+ ++L N + P
Sbjct: 490 DGIFDRLTSLQKIWLHTNPWDCSCPRI 516
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 42.8 bits (101), Expect = 4e-04
Identities = 21/106 (19%), Positives = 45/106 (42%), Gaps = 20/106 (18%)
Query: 283 LQILDLSFNNLTGQIPATLFNIDSLEYLFLGNNSLSGTLPD---QKSENLQKIDLSHNHL 339
+ D + T IP+ L +++ L L N ++ + + NLQ + L + +
Sbjct: 7 SGVCDGRSRSFT-SIPSGLTA--AMKSLDLSFNKIT-YIGHGDLRACANLQVLILKSSRI 62
Query: 340 S----GTFPLWVNSELQM-NLAVNNFKFDISNIS--VFPGLNCLQR 378
+ F + L+ +L+ N+ +S++S F L+ L+
Sbjct: 63 NTIEGDAF--YSLGSLEHLDLSDNH----LSSLSSSWFGPLSSLKY 102
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 100 bits (250), Expect = 3e-23
Identities = 50/275 (18%), Positives = 103/275 (37%), Gaps = 20/275 (7%)
Query: 111 NLSRLMFLSFSHNDFSGPVPRELGNLKELTVLAFGTNNFSGALPPELGNLAKLEQLYIDS 170
L+ + ++ ++ + V +L +T L+ + + L L L +
Sbjct: 17 ALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKD 72
Query: 171 CGAGGEI--PSTFAKLRNMQTLWASDNPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSS 228
+I + L + L S NP + +K+L P
Sbjct: 73 N----QITDLAPLKNLTKITELELSGNPLK-NVSAI-AGLQSIKTLDLTSTQITDVTP-- 124
Query: 229 LSKLASLESLQMSDIYNVSSSLDFVMSLKNLTDLSLRNALITGTIPFGIGELQMLQILDL 288
L+ L++L+ L + N +++ + L NL LS+ NA ++ + + L L L
Sbjct: 125 LAGLSNLQVLYLDL--NQITNISPLAGLTNLQYLSIGNAQVS-DLT-PLANLSKLTTLKA 180
Query: 289 SFNNLTGQIPATLFNIDSLEYLFLGNNSLSGTLPDQKSENLQKIDLSHNHLSGTFPLWVN 348
N ++ I L ++ +L + L NN +S P + NL + L++ ++ + N
Sbjct: 181 DDNKIS-DISP-LASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTNQTITNQPVFYNN 238
Query: 349 SELQMNLAVNNFKFDISNISVFPGLNCLQRNFTCN 383
+ + N+ I+ ++ N T N
Sbjct: 239 NLVVPNVVKGPSGAPIAPATISDNGTYASPNLTWN 273
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 87.8 bits (218), Expect = 5e-19
Identities = 50/221 (22%), Positives = 81/221 (36%), Gaps = 14/221 (6%)
Query: 157 LGNLAKLEQLYIDSCGAGGEIPSTFAKLRNMQTLWASDNPFTGKIPDFIGNWTKLKSLRF 216
LA ++ T A L + TL A T I + L L
Sbjct: 15 DPALANAIKIAAGKSNVTD--TVTQADLDGITTLSAFGTGVT-TIE-GVQYLNNLIGLEL 70
Query: 217 QGNSFQGPIPSSLSKLASLESLQMSDI-YNVSSSLDFVMSLKNLTDLSLRNALITGTIPF 275
+ N + L+ L +L + ++ N ++ + L+++ L L + IT P
Sbjct: 71 KDNQI-----TDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPL 125
Query: 276 GIGELQMLQILDLSFNNLTGQIPATLFNIDSLEYLFLGNNSLSGTLPDQKSENLQKIDLS 335
L LQ+L L N +T I L + +L+YL +GN +S P L +
Sbjct: 126 A--GLSNLQVLYLDLNQIT-NISP-LAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKAD 181
Query: 336 HNHLSGTFPLWVNSELQMNLAVNNFKFDISNISVFPGLNCL 376
N +S PL L NN D+S ++ L +
Sbjct: 182 DNKISDISPLASLPNLIEVHLKNNQISDVSPLANTSNLFIV 222
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 74.7 bits (184), Expect = 1e-14
Identities = 53/246 (21%), Positives = 94/246 (38%), Gaps = 23/246 (9%)
Query: 83 EELVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKELTVL 142
E + L L L++ N T + + NL+++ L S N + L+ + L
Sbjct: 57 EGVQYLNNLIGLELKDNQITDL--APLKNLTKITELELSGNPLKNVSA--IAGLQSIKTL 112
Query: 143 AFGTNNFSGALPPELGNLAKLEQLYIDSCGAGGEIPSTFAKLRNMQTLWASDNPFTGKIP 202
+ + L L+ L+ LY+D I A L N+Q L + + +
Sbjct: 113 DLTSTQITD--VTPLAGLSNLQVLYLDLNQI-TNISP-LAGLTNLQYLSIGNAQVS-DL- 166
Query: 203 DFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLESLQMSDI-YNVSSSLDFVMSLKNLTD 261
+ N +KL +L+ N S +S LASL +L + N S + + + NL
Sbjct: 167 TPLANLSKLTTLKADDNKI-----SDISPLASLPNLIEVHLKNNQISDVSPLANTSNLFI 221
Query: 262 LSLRNALITGTIPFGIGELQMLQILDLSFNNLTGQIPATLFNIDSLEYLFLGNNSLSGTL 321
++L N IT F L + ++ +G A D+ Y + +L+ L
Sbjct: 222 VTLTNQTITNQPVFYNNNLVVPNVV----KGPSGAPIAPATISDNGTYA---SPNLTWNL 274
Query: 322 PDQKSE 327
+
Sbjct: 275 TSFINN 280
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 47.8 bits (114), Expect = 9e-06
Identities = 25/129 (19%), Positives = 49/129 (37%), Gaps = 11/129 (8%)
Query: 275 FGIGELQMLQILDLSFNNLTGQIPATLFNIDSLEYLFLGNNSLSGTLPDQKSENLQKIDL 334
F L + +N+T T ++D + L ++ Q NL ++L
Sbjct: 13 FPDPALANAIKIAAGKSNVTD--TVTQADLDGITTLSAFGTGVTTIEGVQYLNNLIGLEL 70
Query: 335 SHNHLSGTFPLWVNSELQM-NLAVNNFKFDISNISVFPGLNCLQR-NFTCNRN---APQC 389
N ++ PL +++ L+ N + N+S GL ++ + T + P
Sbjct: 71 KDNQITDLAPLKNLTKITELELSGNP----LKNVSAIAGLQSIKTLDLTSTQITDVTPLA 126
Query: 390 KLPSLCCLH 398
L +L L+
Sbjct: 127 GLSNLQVLY 135
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 101 bits (254), Expect = 7e-23
Identities = 62/302 (20%), Positives = 103/302 (34%), Gaps = 29/302 (9%)
Query: 74 GLNKKGVIPEELVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPREL 133
+ L LT L + T + I L+ L L + N+ + +L
Sbjct: 27 AFEMQATDTISEEQLATLTSLDCHNSSITDM--TGIEKLTGLTKLICTSNNITTL---DL 81
Query: 134 GNLKELTVLAFGTNNFSGALPPELGNLAKLEQLYIDSCGAGGEIPS-TFAKLRNMQTLWA 192
LT LA +N + L + L KL L D+ ++ ++ + L
Sbjct: 82 SQNTNLTYLACDSNKLT-NLD--VTPLTKLTYLNCDTN----KLTKLDVSQNPLLTYLNC 134
Query: 193 SDNPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLESLQMSDIYNVSSSLDF 252
+ N T +I + + T+L L N + ++ L +L S +N + LD
Sbjct: 135 ARNTLT-EID--VSHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCS--FNKITELDV 187
Query: 253 VMSLKNLTDLSLRNALITGTIPFGIGELQMLQILDLSFNNLTGQIPATLFNIDSLEYLFL 312
K L L+ IT + + L LD S N LT +I + + L Y
Sbjct: 188 S-QNKLLNRLNCDTNNIT-KLDL--NQNIQLTFLDCSSNKLT-EID--VTPLTQLTYFDC 240
Query: 313 GNNSLSGTLPDQKSENLQKIDLSHNHLSGTFPLWVNSELQMNLAVNNFKFDISNISVFPG 372
N L+ L L + L L N++L A K +++
Sbjct: 241 SVNPLT-ELDVSTLSKLTTLHCIQTDLL-EIDLTHNTQLIYFQAEGCRKIKELDVTHNTQ 298
Query: 373 LN 374
L
Sbjct: 299 LY 300
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 94.4 bits (235), Expect = 2e-20
Identities = 52/318 (16%), Positives = 98/318 (30%), Gaps = 45/318 (14%)
Query: 84 ELVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKEL---- 139
+L LT L D N T L + L++L +L+ N + + L L
Sbjct: 80 DLSQNTNLTYLACDSNKLTN-LD--VTPLTKLTYLNCDTNKLTKLDVSQNPLLTYLNCAR 136
Query: 140 ---TVLAFGTN---------NFSGALPPELGNLAKLEQLYIDSCGAGGEIPS-TFAKLRN 186
T + N ++ +L L +I ++ +
Sbjct: 137 NTLTEIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFN----KITELDVSQNKL 192
Query: 187 MQTLWASDNPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLESLQMSDIYNV 246
+ L N T K+ + +L L N I ++ L L S N
Sbjct: 193 LNRLNCDTNNIT-KLD--LNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCS--VNP 244
Query: 247 SSSLDFVMSLKNLTDLSLRNALITGTIPFGIGELQMLQILDLSFNNLTGQIPATLFNIDS 306
+ LD +L LT L + I + L ++ + +
Sbjct: 245 LTELDVS-TLSKLTTLHCIQTDLL-EID--LTHNTQLIYFQAEGCRKIKELD--VTHNTQ 298
Query: 307 LEYLFLGNNSLSGTLPDQKSENLQKIDLSHNHLSGTFPLWVNSELQM-NLAVNNFKFDIS 365
L L ++ L ++ L + L++ L+ + N++L+ + + I
Sbjct: 299 LYLLDCQAAGIT-ELDLSQNPKLVYLYLNNTELT-ELDVSHNTKLKSLSCVNAH----IQ 352
Query: 366 NISVFPGLNCLQRNFTCN 383
+ S + L NF
Sbjct: 353 DFSSVGKIPALNNNFEAE 370
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 74.3 bits (183), Expect = 5e-14
Identities = 49/301 (16%), Positives = 90/301 (29%), Gaps = 24/301 (7%)
Query: 65 CHITKLRVYGLNKKGVIPEELVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHND 124
T+L + + ++ + L L D N T L + +L FL S N
Sbjct: 167 TPQTQLTTLDCSFNKITELDVSQNKLLNRLNCDTNNITK-LD--LNQNIQLTFLDCSSNK 223
Query: 125 FSGPVPRELGNLKELTVLAFGTNNFSGALPPELGNLAKLEQLYIDSCGAGGEIPS-TFAK 183
+ ++ L +LT N + L + L+KL L+ ++
Sbjct: 224 LTEI---DVTPLTQLTYFDCSVNPLT-ELD--VSTLSKLTTLHCIQT----DLLEIDLTH 273
Query: 184 LRNMQTLWASDNPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLESLQMSDI 243
+ A ++ + + T+L L Q LS+ L L +++
Sbjct: 274 NTQLIYFQAEGCRKIKELD--VTHNTQLYLLDCQAAGIT---ELDLSQNPKLVYLYLNN- 327
Query: 244 YNVSSSLDFVMSLKNLTDLSLRNALITGTIPFGIGELQMLQILDLSFNNLTGQIPATLFN 303
+ LD L LS NA I +G++ L + TL N
Sbjct: 328 -TELTELDVS-HNTKLKSLSCVNAHIQ-DFS-SVGKIPALNNNFEAEGQTITMPKETLTN 383
Query: 304 IDSLEYLFLGNNSLSGTLPDQKSENLQKIDLSHNHLSGTFPLWVNSELQMNLAVNNFKFD 363
+ G + + + D + N ++ N + N
Sbjct: 384 NSLTIAVSPDLLDQFGNPMNIEPGDGGVYDQATNTITWENLSTDNPAVTYTFTSENGAIV 443
Query: 364 I 364
Sbjct: 444 G 444
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 74.3 bits (183), Expect = 5e-14
Identities = 39/216 (18%), Positives = 71/216 (32%), Gaps = 16/216 (7%)
Query: 161 AKLEQLYIDSCGAGGEIPSTFAKLRNMQTLWASDNPFTGKIPDFIGNWTKLKSLRFQGNS 220
+ + +L + +L ++ T + I T L L N+
Sbjct: 18 DNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSIT-DMTG-IEKLTGLTKLICTSNN 75
Query: 221 FQGPIPSSLSKLASLESLQMSDIYNVSSSLDFVMSLKNLTDLSLRNALITGTIPFGIGEL 280
+ LS+ +L L N ++LD L LT L+ +T + +
Sbjct: 76 ITT-LD--LSQNTNLTYLACDS--NKLTNLDVT-PLTKLTYLNCDTNKLT-KLDVS--QN 126
Query: 281 QMLQILDLSFNNLTGQIPATLFNIDSLEYLFLGNNSLSGTLPDQKSENLQKIDLSHNHLS 340
+L L+ + N LT +I + + L L N L L +D S N ++
Sbjct: 127 PLLTYLNCARNTLT-EID--VSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKIT 183
Query: 341 GTFPLWVNSELQMNLAVNNFKFDISNISVFPGLNCL 376
+ N L L + +++ L L
Sbjct: 184 -ELDVSQNKLLN-RLNCDTNNITKLDLNQNIQLTFL 217
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 96.5 bits (240), Expect = 6e-22
Identities = 52/271 (19%), Positives = 80/271 (29%), Gaps = 39/271 (14%)
Query: 84 ELVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKELTVLA 143
+ ++L+ LTV + +S L L+ + + +G P L +
Sbjct: 66 KSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNI 125
Query: 144 FGTNNFS----GALPPELGNLAK--LEQLYIDSCGAGGEIPSTFAKLRNMQTLWASDNPF 197
N S A EL K L+ L I + + TL SDNP
Sbjct: 126 LNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPE 185
Query: 198 TGKIP----DFIGNWTKLKSLRFQGNSFQ---GPIPSSLSKLASLESLQMSDIYNVSSSL 250
G+ + L+ L + + G + + L+ L
Sbjct: 186 LGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGL------------ 233
Query: 251 DFVMSLKNLTDLSLRNALITGTIPFGIGELQMLQILDLSFNNLTGQIPATLFNIDSLEYL 310
DLS N+L L L+LSF L Q+P L L L
Sbjct: 234 ----------DLS-HNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLPA--KLSVL 279
Query: 311 FLGNNSLSGTLPDQKSENLQKIDLSHNHLSG 341
L N L + + + L N
Sbjct: 280 DLSYNRLDRNPSPDELPQVGNLSLKGNPFLD 310
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 81.9 bits (202), Expect = 5e-17
Identities = 49/290 (16%), Positives = 91/290 (31%), Gaps = 27/290 (9%)
Query: 111 NLSRLMFLSFSHNDFSGPVPREL-GNLKELTVLAFGTNNFSGALP-PELGNLAKLEQLYI 168
N S S + G EL G + L L + + ++ L++L +
Sbjct: 16 NFSDPKPDWSSAFNCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTV 75
Query: 169 DSCGAGGEIPSTFAKLRNM---QTLWASDNPFTGKIPDFIGN--WTKLKSLRFQGNSFQG 223
+ I ++ + Q L + TG P + L L + S+
Sbjct: 76 RAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWAT 135
Query: 224 PIPSSLS----KLASLESLQMSDIYNVSSSLDFVMSLKNLTDLSLRNALITGTIPFGI-- 277
L+ L ++ ++++ S + V L+ L L + G
Sbjct: 136 RDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISAL 195
Query: 278 --GELQMLQILDLSFNNLT---GQIPATLFNIDSLEYLFLGNNSLSGTLPD---QKSENL 329
+ LQ+L L + G A L+ L L +NSL L
Sbjct: 196 CPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQL 255
Query: 330 QKIDLSHNHLSGTFPLWVNSELQM-NLAVNNFKFDISNISVFPGLNCLQR 378
++LS L P + ++L + +L+ N + L +
Sbjct: 256 NSLNLSFTGLK-QVPKGLPAKLSVLDLSYNR----LDRNPSPDELPQVGN 300
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 54.5 bits (131), Expect = 6e-08
Identities = 28/167 (16%), Positives = 46/167 (27%), Gaps = 13/167 (7%)
Query: 66 HITKLRVYGLNKKGVIPEELVTLQYLTVLKIDQNFFTGPLP----SFIGNLSRLMFLSFS 121
+ L + + E++ L+ L + N G L L+
Sbjct: 150 GLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALR 209
Query: 122 HNDF---SGPVPRELGNLKELTVLAFGTNNFSGALPPEL-GNLAKLEQLYIDSCGAGGEI 177
+ SG +L L N+ A ++L L + G
Sbjct: 210 NAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVP 269
Query: 178 PSTFAKLRNMQTLWASDNPFTGKIPDFIGNWTKLKSLRFQGNSFQGP 224
AKL L S N P ++ +L +GN F
Sbjct: 270 KGLPAKL---SVLDLSYNRLDR-NP-SPDELPQVGNLSLKGNPFLDS 311
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 95.5 bits (238), Expect = 2e-21
Identities = 52/273 (19%), Positives = 100/273 (36%), Gaps = 29/273 (10%)
Query: 82 PEELVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKELTV 141
+ L+ L L + N + P L +L L S N +P ++ K L
Sbjct: 69 DGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKE-LPEKM--PKTLQE 125
Query: 142 LAFGTNNFSGALPPE-LGNLAKLEQLYIDS-CGAGGEIPS-TFAKLRNMQTLWASDNPFT 198
L N + + L ++ + + + I + F ++ + + +D T
Sbjct: 126 LRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT 184
Query: 199 GKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLESLQMSDIYNVSSSLD---FVMS 255
IP G L L GN +SL L +L L +S +N S++D +
Sbjct: 185 -TIPQ--GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLS--FNSISAVDNGSL-AN 238
Query: 256 LKNLTDLSLRNALITGTIPFGIGELQMLQILDLSFNNLTGQIPATLF-------NIDSLE 308
+L +L L N + +P G+ + + +Q++ L NN++ I + F S
Sbjct: 239 TPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS-AIGSNDFCPPGYNTKKASYS 296
Query: 309 YLFLGNNSLSGT-LPD---QKSENLQKIDLSHN 337
+ L +N + + + + L +
Sbjct: 297 GVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 94.3 bits (235), Expect = 5e-21
Identities = 62/270 (22%), Positives = 97/270 (35%), Gaps = 49/270 (18%)
Query: 81 IPEELVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKELT 140
+P++L +L + N T NL L L +N S P L +L
Sbjct: 46 VPKDL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLE 103
Query: 141 VLAFGTNNFSGALPPELGNLAKLEQLYIDSCGAGGEI----PSTFAKLRNMQTLWASDNP 196
L N LP ++ L++L + EI S F L M + N
Sbjct: 104 RLYLSKNQLK-ELPEKM--PKTLQELRVHEN----EITKVRKSVFNGLNQMIVVELGTN- 155
Query: 197 FTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLESLQMSD--IYNVSSSLDFVM 254
LKS + +FQG + L ++++D I + L
Sbjct: 156 -------------PLKSSGIENGAFQG--------MKKLSYIRIADTNITTIPQGL---- 190
Query: 255 SLKNLTDLSLRNALITGTIPFGI-GELQMLQILDLSFNNLTGQIPATLF-NIDSLEYLFL 312
+LT+L L IT + L L L LSFN+++ + N L L L
Sbjct: 191 -PPSLTELHLDGNKIT-KVDAASLKGLNNLAKLGLSFNSIS-AVDNGSLANTPHLRELHL 247
Query: 313 GNNSLSGTLPD--QKSENLQKIDLSHNHLS 340
NN L +P + +Q + L +N++S
Sbjct: 248 NNNKLV-KVPGGLADHKYIQVVYLHNNNIS 276
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 97.3 bits (242), Expect = 4e-21
Identities = 57/329 (17%), Positives = 103/329 (31%), Gaps = 57/329 (17%)
Query: 45 ESPNNNPAIVCNCTFDNGATCHITKLRVYGLNKKGVIPEELVTLQYLTVLKIDQNFFTGP 104
E+ N +++ C + ++L++ +P+ L +TVL+I QN
Sbjct: 44 ENRNEAVSLLKECLINQ-----FSELQLNR-LNLSSLPDNL--PPQITVLEITQNALI-S 94
Query: 105 LPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKELTVLAFGTNNFSGALPPELGNLAKLE 164
LP +L L N S +P +LK L V N + LP L E
Sbjct: 95 LPELPASLEYL---DACDNRLST-LPELPASLKHLDV---DNNQLT-MLPELPALL---E 143
Query: 165 QLYIDSCGAGGEIPSTFAKLRNMQTLWASDNPFTGKIPDFIGNWTKLKSLRFQGNSFQGP 224
+ D+ ++ +++ L +N T +P+ + L++L N +
Sbjct: 144 YINADNN----QLTMLPELPTSLEVLSVRNNQLT-FLPELPES---LEALDVSTNLLES- 194
Query: 225 IPSSLSKLASLESLQMSDIYNVSSSLDFVMSLKNLTDLSLRNALITGTIPFGIGELQMLQ 284
+P+ + E R IT IP I L
Sbjct: 195 LPAVPVRNHHSEET--------------------EIFFRCRENRIT-HIPENILSLDPTC 233
Query: 285 ILDLSFNNLTGQIPATLFNIDSLEYLFLGNNSLSGTLPDQKSENLQKIDLSHNHLSGTFP 344
+ L N L+ +I +L + S + Q + + D
Sbjct: 234 TIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTAWFPENKQ 293
Query: 345 -----LWVNSELQMNLAVNNFKFDISNIS 368
+W + N F + +S
Sbjct: 294 SDVSQIW--HAFEHEEHANTFSAFLDRLS 320
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 42.3 bits (99), Expect = 7e-04
Identities = 15/95 (15%), Positives = 33/95 (34%), Gaps = 8/95 (8%)
Query: 272 TIPFGIGELQMLQILDLSFNNLTGQIPATLFNI-DSLEYLFLGNNS---LSGTLPDQKSE 327
+I I L + +N ++ A F+ D E L + L +
Sbjct: 2 SIMLPINNNFSL-SQNSFYNTIS-GTYADYFSAWDKWEKQALPGENRNEAVSLLKECLIN 59
Query: 328 NLQKIDLSHNHLSGTFPLWVNSELQM-NLAVNNFK 361
++ L+ +LS + P + ++ + + N
Sbjct: 60 QFSELQLNRLNLS-SLPDNLPPQITVLEITQNALI 93
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 94.8 bits (236), Expect = 1e-20
Identities = 48/238 (20%), Positives = 83/238 (34%), Gaps = 25/238 (10%)
Query: 113 SRLMFLSFSHNDFSGPVPRELGNLKELTVLAFGTNNFSGALPPE-LGNLAKLEQLYIDSC 171
S +L+ N+ +L L VL G N+ + LA L L +
Sbjct: 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR-QIEVGAFNGLASLNTLELFDN 133
Query: 172 GAGGEI----PSTFAKLRNMQTLWASDNPFTGKIPDFIGNWTKLKSLRF----QGNSFQG 223
+ F L ++ LW +NP IP + ++ SL + +
Sbjct: 134 ----WLTVIPSGAFEYLSKLRELWLRNNPIE-SIPS--YAFNRVPSLMRLDLGELKKLEY 186
Query: 224 PIPSSLSKLASLESLQMSDIYNVSSSLDFVMSLKNLTDLSLRNALITGTIPFGIGELQML 283
+ L +L+ L + + + L L +L + P L L
Sbjct: 187 ISEGAFEGLFNLKYLNLGM--CNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSL 244
Query: 284 QILDLSFNNLTGQIPATLF-NIDSLEYLFLGNNSLSGTLPD---QKSENLQKIDLSHN 337
+ L + + ++ I F + SL L L +N+LS +LP L ++ L HN
Sbjct: 245 KKLWVMNSQVS-LIERNAFDGLASLVELNLAHNNLS-SLPHDLFTPLRYLVELHLHHN 300
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 88.7 bits (220), Expect = 1e-18
Identities = 56/267 (20%), Positives = 97/267 (36%), Gaps = 28/267 (10%)
Query: 64 TCHITKLRVYGLNKKG--VIPEELVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFS 121
+C +V ++G +P+ + L + +N +L L L
Sbjct: 51 SCSNQFSKVV-CTRRGLSEVPQGI--PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLG 107
Query: 122 HNDFSGPVPRELGNLKELTVLAFGTNNFSGALPPE-LGNLAKLEQLYIDSCGAGGEI--- 177
N L L L N + +P L+KL +L++ + I
Sbjct: 108 RNSIRQIEVGAFNGLASLNTLELFDNWLT-VIPSGAFEYLSKLRELWLRNN----PIESI 162
Query: 178 -PSTFAKLRNMQTLWASDNPFTGKIPD--FIGNWTKLKSLRFQGNSFQGPIPSSLSKLAS 234
F ++ ++ L + I + F G LK L + + +P+ L+ L
Sbjct: 163 PSYAFNRVPSLMRLDLGELKKLEYISEGAFEGL-FNLKYLNLGMCNIKD-MPN-LTPLVG 219
Query: 235 LESLQMSD--IYNVSSSLDFVMSLKNLTDLSLRNALITGTIPFG-IGELQMLQILDLSFN 291
LE L+MS + F L +L L + N+ ++ I L L L+L+ N
Sbjct: 220 LEELEMSGNHFPEIRPG-SFH-GLSSLKKLWVMNSQVS-LIERNAFDGLASLVELNLAHN 276
Query: 292 NLTGQIPATLF-NIDSLEYLFLGNNSL 317
NL+ +P LF + L L L +N
Sbjct: 277 NLS-SLPHDLFTPLRYLVELHLHHNPW 302
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 72.9 bits (179), Expect = 1e-13
Identities = 40/209 (19%), Positives = 74/209 (35%), Gaps = 35/209 (16%)
Query: 138 ELTVLAFGTNNFSGALPPELGNLAKLEQLYIDSCGAGGEIPS-TFAKLRNMQTLWASDNP 196
L NN +L LE L + +I F L ++ TL DN
Sbjct: 76 NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR-QIEVGAFNGLASLNTLELFDNW 134
Query: 197 FTGKIPD--FIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLESLQMSDIYNVSSSLDFVM 254
T IP F +KL+ L + N + + +++ SL L + +
Sbjct: 135 LT-VIPSGAFEYL-SKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGE-LK--------- 182
Query: 255 SLKNLTDLSLRNALITGTIPFGIGELQMLQILDLSFNNLTGQIPATLFNIDSLEYLFLGN 314
L+ +++ + L L+ L+L N+ +P L + LE L +
Sbjct: 183 KLEYISEGAFEG-------------LFNLKYLNLGMCNIK-DMP-NLTPLVGLEELEMSG 227
Query: 315 NSLSGTLPD---QKSENLQKIDLSHNHLS 340
N + +L+K+ + ++ +S
Sbjct: 228 NHFP-EIRPGSFHGLSSLKKLWVMNSQVS 255
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 55.5 bits (134), Expect = 4e-08
Identities = 32/134 (23%), Positives = 52/134 (38%), Gaps = 22/134 (16%)
Query: 258 NLTDLSLRNALITGTIPFGI-GELQMLQILDLSFNNLTGQIPATLF-NIDSLEYLFLGNN 315
N L+L I I L L++L L N++ QI F + SL L L +N
Sbjct: 76 NTRYLNLMENNIQ-MIQADTFRHLHHLEVLQLGRNSIR-QIEVGAFNGLASLNTLELFDN 133
Query: 316 SLSGTLPD---QKSENLQKIDLSHNHLS----GTF-PLWVNSELQ-MNLAVNNFKFDISN 366
L+ +P + L+++ L +N + F + L ++L +
Sbjct: 134 WLT-VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRV---PSLMRLDLGELK---KLEY 186
Query: 367 IS--VFPGLNCLQR 378
IS F GL L+
Sbjct: 187 ISEGAFEGLFNLKY 200
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 54.4 bits (131), Expect = 1e-07
Identities = 22/113 (19%), Positives = 40/113 (35%), Gaps = 4/113 (3%)
Query: 111 NLSRLMFLSFSHNDFSGPVPRELGNLKELTVLAFGTNNFSGALPPE-LGNLAKLEQLYID 169
L L +L+ + +P L L L L N+F + P L+ L++L++
Sbjct: 194 GLFNLKYLNLGMCNIKD-MP-NLTPLVGLEELEMSGNHFP-EIRPGSFHGLSSLKKLWVM 250
Query: 170 SCGAGGEIPSTFAKLRNMQTLWASDNPFTGKIPDFIGNWTKLKSLRFQGNSFQ 222
+ + F L ++ L + N + D L L N +
Sbjct: 251 NSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 92.4 bits (230), Expect = 2e-20
Identities = 54/261 (20%), Positives = 91/261 (34%), Gaps = 40/261 (15%)
Query: 91 LTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHND--FSGPVPRELGNLKELTVLAFGTNN 148
T L+++ N L++L LS S N F G + L L N
Sbjct: 30 ATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG 89
Query: 149 FSGALPPELGNLAKLEQLYIDSCGAGGEIP--STFAKLRNMQTLWASDNPFTGKIPDFI- 205
+ L +LE L ++ S F LRN+ L S + I
Sbjct: 90 VI-TMSSNFLGLEQLEHLDFQHSNLK-QMSEFSVFLSLRNLIYLDISHTHTR-VAFNGIF 146
Query: 206 GNWTKLKSLRFQGNSFQGPIPS-SLSKLASLESLQMSDIYNVSSSLDFVMSLKNLTDLSL 264
+ L+ L+ GNSFQ ++L +L L +S L+ L+ +
Sbjct: 147 NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS--QC---------QLEQLSPTAF 195
Query: 265 RNALITGTIPFGIGELQMLQILDLSFNNLTGQIPATLF-NIDSLEYLFLGNNSLSGTLP- 322
+ L LQ+L++S NN + + ++SL+ L N + T
Sbjct: 196 NS-------------LSSLQVLNMSHNNFF-SLDTFPYKCLNSLQVLDYSLNHIM-TSKK 240
Query: 323 ---DQKSENLQKIDLSHNHLS 340
+L ++L+ N +
Sbjct: 241 QELQHFPSSLAFLNLTQNDFA 261
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 80.8 bits (200), Expect = 1e-16
Identities = 49/219 (22%), Positives = 80/219 (36%), Gaps = 28/219 (12%)
Query: 176 EIPSTFAKLRNMQTLWASDNPFTGKIPDFIGNWTKLKSLRFQGN--SFQGPIPSSLSKLA 233
+P+ + L N T+L L N SF+G S
Sbjct: 21 SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTT 78
Query: 234 SLESLQMSD--IYNVSSSLDFVMSLKNLTDLSLRNALITGTIPFGI-GELQMLQILDLSF 290
SL+ L +S + +SS+ L+ L L +++ + F + L+ L LD+S
Sbjct: 79 SLKYLDLSFNGVITMSSNFL---GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISH 135
Query: 291 NNLTGQIPATLF-NIDSLEYLFLGNNSLSGTLPD---QKSENLQKIDLSHNHLS----GT 342
+ +F + SLE L + NS + NL +DLS L
Sbjct: 136 THTR-VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTA 194
Query: 343 FPLWVNSELQM-NLAVNNFKFDISNIS--VFPGLNCLQR 378
F + LQ+ N++ NN ++ + LN LQ
Sbjct: 195 FNSLSS--LQVLNMSHNN----FFSLDTFPYKCLNSLQV 227
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 94.9 bits (236), Expect = 2e-20
Identities = 58/310 (18%), Positives = 120/310 (38%), Gaps = 22/310 (7%)
Query: 46 SPNNNPAIVCNCTFDNGATCHITKLR----VYGLNKKGVIPEELVTLQYLTVLKIDQNFF 101
N + + + A ++ ++ + I +L T L+ L ++
Sbjct: 173 PTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIET 232
Query: 102 TGPLPSFIGNL---SRLMFLSFSHNDFSGPVPRELG-----NLKELTVLAFGTNNFSGAL 153
T I L + + + S S+ G + +LK L++ ++ F
Sbjct: 233 TWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQ 292
Query: 154 PPELGNLAKLEQLYIDSCGAGGEIPSTFAKLRNMQTLWASDNPFTGKIPDFIGNWTKLKS 213
+ + G +K+ L S+N T + + G+ T+L++
Sbjct: 293 SYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELET 352
Query: 214 LRFQGNSFQ--GPIPSSLSKLASLESLQMSD-IYNVSSSLDFVMSLKNLTDLSLRNALIT 270
L Q N + I +++ SL+ L +S + K+L L++ + ++T
Sbjct: 353 LILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILT 412
Query: 271 GTIPFGIGELQMLQILDLSFNNLTGQIPATLFNIDSLEYLFLGNNSLSGTLPD---QKSE 327
TI + +++LDL N + IP + +++L+ L + +N L ++PD +
Sbjct: 413 DTIFRCL--PPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLT 468
Query: 328 NLQKIDLSHN 337
+LQKI L N
Sbjct: 469 SLQKIWLHTN 478
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 79.5 bits (196), Expect = 1e-15
Identities = 48/315 (15%), Positives = 100/315 (31%), Gaps = 32/315 (10%)
Query: 75 LNKKGVIPEELVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSG------- 127
L + E+ LQ + F T FI ++S + ++
Sbjct: 147 LGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKC 206
Query: 128 ----PVPRELGNLKELTVLAFGTNNFSGALPPELGNLAK---LEQLYIDSCGAGGEIPS- 179
+ +L +L+ L + + L + I + G++
Sbjct: 207 SYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFR 266
Query: 180 ----TFAKLRNMQTLWASDNPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASL 235
+ L+ + + F ++ + F + + SK++
Sbjct: 267 DFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPF 326
Query: 236 ESLQMSDIYNVSSSLDFVMSLKNLTDLSLRNALITGTIPFGIG---ELQMLQILDLSFNN 292
L S+ + + L L L L+ + + +++ LQ LD+S N+
Sbjct: 327 LHLDFSNNLLTDTVFENCGHLTELETLILQMNQLK-ELSKIAEMTTQMKSLQQLDISQNS 385
Query: 293 LTGQIPATLF-NIDSLEYLFLGNNSLSGTLPDQKSENLQKIDLSHNHLS----GTFPLWV 347
++ SL L + +N L+ T+ ++ +DL N + L
Sbjct: 386 VSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIKSIPKQVVKL-- 443
Query: 348 NSELQ-MNLAVNNFK 361
LQ +N+A N K
Sbjct: 444 -EALQELNVASNQLK 457
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 78.8 bits (194), Expect = 3e-15
Identities = 46/259 (17%), Positives = 91/259 (35%), Gaps = 38/259 (14%)
Query: 66 HITKLRVYGLNKKGVIPEELVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHND- 124
I+ +++ G +L+ L++ ++ + F P S + +F+ +
Sbjct: 253 SISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGT 312
Query: 125 --FSGPVPRELGNLKELTVLAFGTNNFSGALPPELGNLAKLEQLYIDSCG--AGGEIPST 180
P ++ L F N + + G+L +LE L + +I
Sbjct: 313 RMVHMLCPSKISPFLHLD---FSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEM 369
Query: 181 FAKLRNMQTLWASDNPFTGKIPDFIGNW-TKLKSLRFQGNSFQGPIPSSLSKLASLESLQ 239
+++++Q L S N + +W L SL N I L
Sbjct: 370 TTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL---------- 419
Query: 240 MSDIYNVSSSLDFVMSLKNLTDLSLRNALITGTIPFGIGELQMLQILDLSFNNLTGQIPA 299
+ L L + I +IP + +L+ LQ L+++ N L +P
Sbjct: 420 ----------------PPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPD 461
Query: 300 TLF-NIDSLEYLFLGNNSL 317
+F + SL+ ++L N
Sbjct: 462 GIFDRLTSLQKIWLHTNPW 480
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 70.3 bits (172), Expect = 1e-12
Identities = 61/328 (18%), Positives = 102/328 (31%), Gaps = 46/328 (14%)
Query: 91 LTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKELTVLAFGTNNFS 150
T+L I QN+ + S I +LS+L L SHN +EL L N
Sbjct: 23 TTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV 82
Query: 151 GALPPELGNLAKLEQLY-----IDSCGAGGEIPSTFAKLRNMQTLWASDNPFTGKIPDFI 205
+ L+ L D+ E F + ++ L S I
Sbjct: 83 -KIS--CHPTVNLKHLDLSFNAFDALPICKE----FGNMSQLKFLGLSTTHLEKSSVLPI 135
Query: 206 GNWTKLKSLRFQGNSFQGPI-PSSLSKLASLESLQMSDIYNVSSSLDFVMSLKNLTDLSL 264
+ K L G ++ P L + ESL + N +S+K + +L L
Sbjct: 136 AHLNISKVLLVLGETYGEKEDPEGLQDF-NTESLHIVFPTNKEFHFILDVSVKTVANLEL 194
Query: 265 RN---------ALITGTIPFGIGELQMLQILDLSFNNLTGQIPATLFNI---DSLEYLFL 312
N +I + L L L+ T + + ++ Y +
Sbjct: 195 SNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSI 254
Query: 313 GNNSLSGTLPDQKSENLQKIDLSHNHLSGTFPLWVNSELQMNLAVNNFKFDISNISVFPG 372
N L G L + D S L L ++ V++ F ++
Sbjct: 255 SNVKLQGQLD------FRDFDYSGTSL---------KALSIHQVVSD-VFGFPQSYIYEI 298
Query: 373 LNCLQ-RNFTCNRNAPQCKLPSLCCLHP 399
+ + +NFT + + LC
Sbjct: 299 FSNMNIKNFTVSGT---RMVHMLCPSKI 323
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 90.8 bits (226), Expect = 7e-20
Identities = 53/273 (19%), Positives = 91/273 (33%), Gaps = 30/273 (10%)
Query: 82 PEELVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKELTV 141
++ LQ+L L + N + L +L L S N +P L L
Sbjct: 71 KDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVE-IPPNL--PSSLVE 127
Query: 142 LAFGTNNFSGALPPE-LGNLAKLEQLYIDS--CGAGGEIPSTFAKLRNMQTLWASDNPFT 198
L N +P L + + + G P F L + L S+ T
Sbjct: 128 LRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLT 185
Query: 199 GKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLESLQMSDIYNVSSSLD---FVMS 255
IP L L N Q L + + L L + +N ++
Sbjct: 186 -GIPK--DLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLG--HNQIRMIENGSL-SF 239
Query: 256 LKNLTDLSLRNALITGTIPFGIGELQMLQILDLSFNNLTGQIPATLF-------NIDSLE 308
L L +L L N ++ +P G+ +L++LQ++ L NN+T ++ F
Sbjct: 240 LPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNIT-KVGVNDFCPVGFGVKRAYYN 297
Query: 309 YLFLGNNSLS-GTLPD---QKSENLQKIDLSHN 337
+ L NN + + + + I +
Sbjct: 298 GISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 87.0 bits (216), Expect = 2e-18
Identities = 57/270 (21%), Positives = 94/270 (34%), Gaps = 50/270 (18%)
Query: 81 IPEELVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKELT 140
+P+E+ T+L + N + L L L +N S + L++L
Sbjct: 48 VPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQ 105
Query: 141 VLAFGTNNFSGALPPELGNLAKLEQLYIDSCGAGGEI----PSTFAKLRNMQTLWASDNP 196
L N+ +PP L + L +L I I F+ LRNM + N
Sbjct: 106 KLYISKNHLV-EIPPNL--PSSLVELRIHDN----RIRKVPKGVFSGLRNMNCIEMGGN- 157
Query: 197 FTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLESLQMSD--IYNVSSSLDFVM 254
L++ F+ +F G L L++S+ + + L
Sbjct: 158 -------------PLENSGFEPGAFDGL---------KLNYLRISEAKLTGIPKDL---- 191
Query: 255 SLKNLTDLSLRNALITGTIPFGI-GELQMLQILDLSFNNLTGQIPATLF-NIDSLEYLFL 312
+ L +L L + I I L L L N + I + +L L L
Sbjct: 192 -PETLNELHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQIR-MIENGSLSFLPTLRELHL 248
Query: 313 GNNSLSGTLPD--QKSENLQKIDLSHNHLS 340
NN LS +P + LQ + L N+++
Sbjct: 249 DNNKLS-RVPAGLPDLKLLQVVYLHTNNIT 277
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 41.9 bits (99), Expect = 6e-04
Identities = 29/140 (20%), Positives = 49/140 (35%), Gaps = 13/140 (9%)
Query: 66 HITKLRVYGLNKKGVIPEE-LVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHND 124
+ +L + NK I E L+ L L + N + L L L +N
Sbjct: 194 TLNELHLDH-NKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNK 252
Query: 125 FSGPVPRELGNLKELTVLAFGTNNFSGALPPE-------LGNLAKLEQLYIDS-CGAGGE 176
S VP L +LK L V+ TNN + + A + + + E
Sbjct: 253 LSR-VPAGLPDLKLLQVVYLHTNNIT-KVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWE 310
Query: 177 I-PSTFAKLRNMQTLWASDN 195
+ P+TF + + + +
Sbjct: 311 VQPATFRCVTDRLAIQFGNY 330
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 92.5 bits (230), Expect = 7e-20
Identities = 49/234 (20%), Positives = 85/234 (36%), Gaps = 27/234 (11%)
Query: 118 LSFSHNDFSGPVPRELGNLKELTVLAFGTNNFSGALPPE-LGNLAKLEQLYIDSCGAGGE 176
L+ N +L+ L +L N+ + LA L L +
Sbjct: 69 LNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLELFDN----R 123
Query: 177 I----PSTFAKLRNMQTLWASDNPFTGKIPDFIGNWTKLKSLRF----QGNSFQGPIPSS 228
+ F L ++ LW +NP IP + ++ SLR + +
Sbjct: 124 LTTIPNGAFVYLSKLKELWLRNNPIE-SIPS--YAFNRIPSLRRLDLGELKRLSYISEGA 180
Query: 229 LSKLASLESLQMSDIYNVSSSLDFVMSLKNLTDLSLRNALITGTIPFGI-GELQMLQILD 287
L++L L ++ + + L L +L L ++ I G L LQ L
Sbjct: 181 FEGLSNLRYLNLAM--CNLREIPNLTPLIKLDELDLSGNHLS-AIRPGSFQGLMHLQKLW 237
Query: 288 LSFNNLTGQIPATLF-NIDSLEYLFLGNNSLSGTLPD---QKSENLQKIDLSHN 337
+ + + I F N+ SL + L +N+L+ LP +L++I L HN
Sbjct: 238 MIQSQIQ-VIERNAFDNLQSLVEINLAHNNLT-LLPHDLFTPLHHLERIHLHHN 289
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 73.2 bits (180), Expect = 1e-13
Identities = 45/208 (21%), Positives = 76/208 (36%), Gaps = 33/208 (15%)
Query: 138 ELTVLAFGTNNFSGALPPELGNLAKLEQLYIDSCGAGGEIPSTFAKLRNMQTLWASDNPF 197
+L N +L LE L + F L N+ TL DN
Sbjct: 65 NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRL 124
Query: 198 TGKIPD--FIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLESLQMSDIYNVSSSLDFVMS 255
T IP+ F+ +KLK L + N + + +++ SL L + +
Sbjct: 125 T-TIPNGAFVYL-SKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGE-LK---------R 172
Query: 256 LKNLTDLSLRNALITGTIPFGIGELQMLQILDLSFNNLTGQIPATLFNIDSLEYLFLGNN 315
L +++ + L L+ L+L+ NL +IP L + L+ L L N
Sbjct: 173 LSYISEGAFEG-------------LSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGN 217
Query: 316 SLSGTLPD---QKSENLQKIDLSHNHLS 340
LS + Q +LQK+ + + +
Sbjct: 218 HLS-AIRPGSFQGLMHLQKLWMIQSQIQ 244
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 68.2 bits (167), Expect = 4e-12
Identities = 37/182 (20%), Positives = 58/182 (31%), Gaps = 7/182 (3%)
Query: 88 LQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKELTVLAFGTN 147
L L L++ N T LS+L L +N + L L G
Sbjct: 111 LANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGEL 170
Query: 148 NFSGALPPE-LGNLAKLEQLYIDSCGAGGEIPSTFAKLRNMQTLWASDNPFTGKIPDFIG 206
+ L+ L L + C EIP L + L S N + P
Sbjct: 171 KRLSYISEGAFEGLSNLRYLNLAMC-NLREIP-NLTPLIKLDELDLSGNHLSAIRPGSFQ 228
Query: 207 NWTKLKSLRFQGNSFQGPIPSSLSKLASLESLQMSDIYNVSSSL--DFVMSLKNLTDLSL 264
L+ L + Q ++ L SL + ++ N + L D L +L + L
Sbjct: 229 GLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAH--NNLTLLPHDLFTPLHHLERIHL 286
Query: 265 RN 266
+
Sbjct: 287 HH 288
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 64.4 bits (157), Expect = 7e-11
Identities = 47/166 (28%), Positives = 71/166 (42%), Gaps = 24/166 (14%)
Query: 225 IPSSLSKLASLESLQMSDIYNVSSSLDFVMSLKNLTDLSLRNALITGTIPFGI-GELQML 283
+P +S L +L + I + + F L++L L L I TI G L L
Sbjct: 58 VPDGISTNTRLLNLHENQIQIIKVN-SFK-HLRHLEILQLSRNHIR-TIEIGAFNGLANL 114
Query: 284 QILDLSFNNLTGQIPATLF-NIDSLEYLFLGNNSLSGTLPD---QKSENLQKIDLSH-NH 338
L+L N LT IP F + L+ L+L NN + ++P + +L+++DL
Sbjct: 115 NTLELFDNRLT-TIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKR 172
Query: 339 LS----GTF-PLWVNSELQ-MNLAVNNFKFDISNISVFPGLNCLQR 378
LS G F L S L+ +NLA+ N + I L L
Sbjct: 173 LSYISEGAFEGL---SNLRYLNLAMCN----LREIPNLTPLIKLDE 211
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 56.7 bits (137), Expect = 2e-08
Identities = 23/113 (20%), Positives = 44/113 (38%), Gaps = 4/113 (3%)
Query: 111 NLSRLMFLSFSHNDFSGPVPRELGNLKELTVLAFGTNNFSGALPPE-LGNLAKLEQLYID 169
LS L +L+ + + +P L L +L L N+ S A+ P L L++L++
Sbjct: 183 GLSNLRYLNLAMCNLRE-IP-NLTPLIKLDELDLSGNHLS-AIRPGSFQGLMHLQKLWMI 239
Query: 170 SCGAGGEIPSTFAKLRNMQTLWASDNPFTGKIPDFIGNWTKLKSLRFQGNSFQ 222
+ F L+++ + + N T D L+ + N +
Sbjct: 240 QSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 90.6 bits (224), Expect = 6e-19
Identities = 47/286 (16%), Positives = 100/286 (34%), Gaps = 26/286 (9%)
Query: 88 LQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHN---DFSGPVPRELGNLKELTVLAF 144
+ + T L+ + + +++ G + L +T L
Sbjct: 20 FAETIKDNLKKKSVTDA--VTQNELNSIDQIIANNSDIKSVQG-----IQYLPNVTKLFL 72
Query: 145 GTNNFSGALPPELGNLAKLEQLYIDSCGAGGEIP--STFAKLRNMQTLWASDNPFTGKIP 202
N + P L NL L L++D +I S+ L+ +++L N + I
Sbjct: 73 NGNKLTDIKP--LTNLKNLGWLFLDEN----KIKDLSSLKDLKKLKSLSLEHNGIS-DI- 124
Query: 203 DFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLESLQMSDIYNVSSSLDFVMSLKNLTDL 262
+ + + +L+SL N + + LS+L L++L + D N S + + L L +L
Sbjct: 125 NGLVHLPQLESLYLGNN--KITDITVLSRLTKLDTLSLED--NQISDIVPLAGLTKLQNL 180
Query: 263 SLRNALITGTIPFGIGELQMLQILDLSFNNLTGQIPATLFNIDSLEYLFLGNNSLSGTLP 322
L I+ + + L+ L +L+L + N+ + + SL
Sbjct: 181 YLSKNHIS-DLR-ALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEI 238
Query: 323 DQKSENLQKIDLSHNHLSGTFPLWVNSELQMNLAVNNFKFDISNIS 368
+ +K ++ + T + + + +F
Sbjct: 239 ISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKARFHGRVTQ 284
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 78.2 bits (192), Expect = 5e-15
Identities = 40/201 (19%), Positives = 74/201 (36%), Gaps = 17/201 (8%)
Query: 179 STFAKLRNMQTLWASDNPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLESL 238
T + + + + S+ + L ++
Sbjct: 15 FPDDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDI-----KSVQGIQYLPNV 67
Query: 239 QMSDIY-NVSSSLDFVMSLKNLTDLSLRNALITGTIPFGIGELQMLQILDLSFNNLTGQI 297
+ N + + + +LKNL L L I + + +L+ L+ L L N ++ I
Sbjct: 68 TKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIK-DLS-SLKDLKKLKSLSLEHNGIS-DI 124
Query: 298 PATLFNIDSLEYLFLGNNSLSGTLPDQKSENLQKIDLSHNHLSGTFPLWVNSELQM-NLA 356
L ++ LE L+LGNN ++ + L + L N +S PL ++LQ L+
Sbjct: 125 NG-LVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLS 183
Query: 357 VNNFKFDISNISVFPGLNCLQ 377
N+ IS++ GL L
Sbjct: 184 KNH----ISDLRALAGLKNLD 200
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 52.8 bits (126), Expect = 3e-07
Identities = 21/119 (17%), Positives = 42/119 (35%), Gaps = 7/119 (5%)
Query: 259 LTDLSLRNALITGTIPFGIGELQMLQILDLSFNNLTGQIPATLFNIDSLEYLFLGNNSLS 318
+ + + I I F +L ++T + ++S++ + N+ +
Sbjct: 1 MGETITVSTPIK-QI-FPDDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK 56
Query: 319 GTLPDQKSENLQKIDLSHNHLSGTFPLWVNSELQMNLAVNNFKFDISNISVFPGLNCLQ 377
Q N+ K+ L+ N L+ PL L N I ++S L L+
Sbjct: 57 SVQGIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDEN---KIKDLSSLKDLKKLK 112
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 87.5 bits (217), Expect = 1e-18
Identities = 54/269 (20%), Positives = 87/269 (32%), Gaps = 29/269 (10%)
Query: 91 LTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKELTVLAFGTNNFS 150
+ L + N T S + L L + N + +L L L N S
Sbjct: 54 VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS 113
Query: 151 GALPPEL-GNLAKLEQLYIDSCGAGGEI-----PSTFAKLRNMQTLWASDNPFTGKIPDF 204
L L+ L L + S F+ L +Q L + KI
Sbjct: 114 -NLSSSWFKPLSSLTFLNLLGN----PYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRK 168
Query: 205 I-GNWTKLKSLRFQGNSFQGPIPSSLSKLASLESLQMSDIYNVSSSL--DFVMSLKNLTD 261
T L+ L + Q P SL + ++ L + L FV ++
Sbjct: 169 DFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILH--MKQHILLLEIFVDVTSSVEC 226
Query: 262 LSLRNALITG-------TIPF-GIGELQMLQILDLSFNNLTGQIPATLFNIDSLEYLFLG 313
L LR+ + T + + + + ++ +L Q+ L I L L
Sbjct: 227 LELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFS 285
Query: 314 NNSLSGTLPD---QKSENLQKIDLSHNHL 339
N L ++PD + +LQKI L N
Sbjct: 286 RNQLK-SVPDGIFDRLTSLQKIWLHTNPW 313
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 77.1 bits (190), Expect = 3e-15
Identities = 43/250 (17%), Positives = 86/250 (34%), Gaps = 31/250 (12%)
Query: 113 SRLMFLSFSHNDFSGPVPRELGNLKELTVLAFGTNNFSGALPPEL-GNLAKLEQLYIDSC 171
+ L S+N + +L L L +N + + + +L LE L +
Sbjct: 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSYN 110
Query: 172 GAGGEI----PSTFAKLRNMQTLWASDNPFTGKIPD--FIGNWTKLKSLRFQGNSFQGPI 225
+ S F L ++ L NP+ + + + TKL+ LR I
Sbjct: 111 ----YLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKI 165
Query: 226 PS-SLSKLASLESLQMSD--IYNVSS-SLDFVMSLKNLTDLSLRNALITGTIPFGI-GEL 280
+ L LE L++ + + SL S++N++ L L +
Sbjct: 166 QRKDFAGLTFLEELEIDASDLQSYEPKSLK---SIQNVSHLILHMKQHI-LLLEIFVDVT 221
Query: 281 QMLQILDLSFNNLTG----QIPATLFN----IDSLEYLFLGNNSLSGTLPD-QKSENLQK 331
++ L+L +L ++ N + + + + SL + + L +
Sbjct: 222 SSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLE 281
Query: 332 IDLSHNHLSG 341
++ S N L
Sbjct: 282 LEFSRNQLKS 291
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 68.6 bits (168), Expect = 2e-12
Identities = 40/260 (15%), Positives = 79/260 (30%), Gaps = 50/260 (19%)
Query: 138 ELTVLAFGTNNFSGALPPELGNLAKLEQLYIDSCGAGGEIPS-TFAKLRNMQTLWASDNP 196
+ L N + +L L+ L + S G I +F+ L +++ L S N
Sbjct: 53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSYN- 110
Query: 197 FTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLESLQMSD--IYNVSSSLDFVM 254
L +L S L+SL L + + + F
Sbjct: 111 -------------YLSNLS----------SSWFKPLSSLTFLNLLGNPYKTLGETSLFS- 146
Query: 255 SLKNLTDLSL-RNALITGTIPFGI-GELQMLQILDLSFNNLTGQIPATLF-NIDSLEYLF 311
L L L + T I L L+ L++ ++L +I ++ +L
Sbjct: 147 HLTKLQILRVGNMDTFT-KIQRKDFAGLTFLEELEIDASDLQ-SYEPKSLKSIQNVSHLI 204
Query: 312 LGNNSLSGTLPD---QKSENLQKIDLSHNHLSG----------TFPLWVNSELQMNLAVN 358
L L + + +++ ++L L T L + +
Sbjct: 205 LHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITD 263
Query: 359 NFKFDISNISVFPGLNCLQR 378
F + + + ++ L
Sbjct: 264 ESLFQV--MKLLNQISGLLE 281
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 50.9 bits (122), Expect = 9e-07
Identities = 22/143 (15%), Positives = 44/143 (30%), Gaps = 13/143 (9%)
Query: 88 LQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGP--------VPRELGNLKEL 139
+Q ++ L + L F+ S + L D L
Sbjct: 197 IQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTF 256
Query: 140 TVLAFGTNNFSGALPPELGNLAKLEQLYIDSCGAGGEIPSTFAKLRNMQTLWASDNPFT- 198
+ + + L ++ L +L F +L ++Q +W NP+
Sbjct: 257 RNVKITDESLF-QVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 315
Query: 199 --GKIPDFIGNWTKLKSLRFQGN 219
+I ++ W S + QG+
Sbjct: 316 SCPRID-YLSRWLNKNSQKEQGS 337
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 50.5 bits (121), Expect = 1e-06
Identities = 36/117 (30%), Positives = 59/117 (50%), Gaps = 18/117 (15%)
Query: 272 TIPFGIGELQMLQILDLSFNNLTGQIPATLF-NIDSLEYLFLGNNSLSGTLPD---QKSE 327
+IP G+ + ++ LDLS N +T I + +L+ L L +N ++ T+ +
Sbjct: 45 SIPSGL--TEAVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLG 100
Query: 328 NLQKIDLSHNHLS----GTF-PLWVNSELQ-MNLAVNNFKFDISNISVFPGLNCLQR 378
+L+ +DLS+N+LS F PL S L +NL N +K + S+F L LQ
Sbjct: 101 SLEHLDLSYNYLSNLSSSWFKPL---SSLTFLNLLGNPYK-TLGETSLFSHLTKLQI 153
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 85.8 bits (213), Expect = 2e-18
Identities = 52/274 (18%), Positives = 84/274 (30%), Gaps = 51/274 (18%)
Query: 54 VCNCTFDNGAT--CHITKLRVYGLNKKGVIPEELVTLQYLTVLKIDQNFFTGPLPSFIGN 111
C C + T C L+ +P + + + N + +
Sbjct: 5 ACVCYNEPKVTTSCPQQGLQA--------VPVGI--PAASQRIFLHGNRISHVPAASFRA 54
Query: 112 LSRLMFLSFSHNDFSGPVPRELGNLKELTVLAFGTNNFSGALPPE-LGNLAKLEQLYIDS 170
L L N + L L L N ++ P L +L L++D
Sbjct: 55 CRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDR 114
Query: 171 CGAGGEI----PSTFAKLRNMQTLWASDNPFTGKIPD--FIGNWTKLKSLRFQGNSFQGP 224
C + P F L +Q L+ DN +PD F L L GN
Sbjct: 115 C----GLQELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDL-GNLTHLFLHGNRISSV 168
Query: 225 IPSSLSKLASLESLQMSDIYNVSSSLDFVMSLKNLTDLSLRNALITGTIPFGIGELQMLQ 284
+ L SL+ L + + ++ + R+ L L
Sbjct: 169 PERAFRGLHSLDRLLLHQ-----------NRVAHVHPHAFRD-------------LGRLM 204
Query: 285 ILDLSFNNLTGQIPATLF-NIDSLEYLFLGNNSL 317
L L NNL+ +P + +L+YL L +N
Sbjct: 205 TLYLFANNLS-ALPTEALAPLRALQYLRLNDNPW 237
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 76.2 bits (188), Expect = 3e-15
Identities = 36/171 (21%), Positives = 63/171 (36%), Gaps = 13/171 (7%)
Query: 178 PSTFAKLRNMQTLWASDNPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSS-LSKLASLE 236
++F RN+ LW N L+ L N+ + + L L
Sbjct: 49 AASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLH 108
Query: 237 SLQMSD--IYNVSSSLDFVMSLKNLTDLSLRNALITGTIPFGI-GELQMLQILDLSFNNL 293
+L + + + L F L L L L++ + +P +L L L L N +
Sbjct: 109 TLHLDRCGLQELGPGL-FR-GLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRI 165
Query: 294 TGQIPATLF-NIDSLEYLFLGNNSLSGTLPD---QKSENLQKIDLSHNHLS 340
+ +P F + SL+ L L N ++ + + L + L N+LS
Sbjct: 166 S-SVPERAFRGLHSLDRLLLHQNRVA-HVHPHAFRDLGRLMTLYLFANNLS 214
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 54.6 bits (132), Expect = 4e-08
Identities = 22/95 (23%), Positives = 33/95 (34%), Gaps = 11/95 (11%)
Query: 258 NLTDLSLRNALITGTIPFGI-GELQMLQILDLSFNNLTGQIPATLF-NIDSLEYLFLGNN 315
+ L I+ +P + L IL L N L +I A F + LE L L +N
Sbjct: 33 ASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLSDN 90
Query: 316 SLSGTLPD---QKSENLQKIDLSHNHLS----GTF 343
+ ++ L + L L G F
Sbjct: 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLF 125
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 81.9 bits (203), Expect = 6e-18
Identities = 29/183 (15%), Positives = 64/183 (34%), Gaps = 8/183 (4%)
Query: 159 NLAKLEQLYIDSCGAGGEIPSTFAKLRNMQTLWASDNPFTGKIPDFIGNWTKLKSLRFQG 218
+ T A++ ++ + ++ T + I +K L
Sbjct: 21 TFKAYLNGLLGQSSTA---NITEAQMNSLTYITLANINVT-DL-TGIEYAHNIKDLTINN 75
Query: 219 NSFQGPIPSSLSKLASLESLQMSDIYNVSSSLDFVMSLKNLTDLSLRNALITGTIPFGIG 278
+ +S L++LE L++ S + + L +LT L + ++ +I I
Sbjct: 76 IHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKIN 133
Query: 279 ELQMLQILDLSFNNLTGQIPATLFNIDSLEYLFLGNNSLSGTLPDQKSENLQKIDLSHNH 338
L + +DLS+N I L + L+ L + + + + L ++
Sbjct: 134 TLPKVNSIDLSYNGAITDIMP-LKTLPELKSLNIQFDGVHDYRGIEDFPKLNQLYAFSQT 192
Query: 339 LSG 341
+ G
Sbjct: 193 IGG 195
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 74.2 bits (183), Expect = 3e-15
Identities = 27/171 (15%), Positives = 50/171 (29%), Gaps = 10/171 (5%)
Query: 75 LNKKGVIPEELVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRELG 134
L + + LT + + T + I + L+ ++ + P +
Sbjct: 30 LGQSSTANITEAQMNSLTYITLANINVTDL--TGIEYAHNIKDLTINNIHATNYNP--IS 85
Query: 135 NLKELTVLAFGTNNFSGALPPELGNLAKLEQLYIDSCGAGGEIPSTFAKLRNMQTLWASD 194
L L L + + P L L L L I I + L + ++ S
Sbjct: 86 GLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSY 145
Query: 195 NPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLESLQMSDIYN 245
N I + +LKSL Q + + L ++
Sbjct: 146 NGAITDI-MPLKTLPELKSLNIQFDGV-----HDYRGIEDFPKLNQLYAFS 190
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 49.2 bits (118), Expect = 1e-06
Identities = 25/107 (23%), Positives = 39/107 (36%), Gaps = 11/107 (10%)
Query: 68 TKLRVYGLNKKGVIPEELVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHN---- 123
+LR+ G + L L LT+L I + + + I L ++ + S+N
Sbjct: 91 ERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT 150
Query: 124 DFSGPVPRELGNLKELTVLAFGTNNFSGALPPELGNLAKLEQLYIDS 170
D L L EL L + + + KL QLY S
Sbjct: 151 DIMP-----LKTLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFS 190
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 43.8 bits (104), Expect = 7e-05
Identities = 20/147 (13%), Positives = 45/147 (30%), Gaps = 28/147 (19%)
Query: 255 SLKNLTDLSLRNALITGTIPFGIGELQMLQILDLSFNNLTG------------------Q 296
+ K + L + ++ L + L+ N+T
Sbjct: 21 TFKAYLNGLLGQSSTA---NITEAQMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIH 77
Query: 297 IP--ATLFNIDSLEYLFLGNNSLSGTLPD--QKSENLQKIDLSHNHLSGTF--PLWVNSE 350
+ + +LE L + ++ +L +D+SH+ + + +
Sbjct: 78 ATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPK 137
Query: 351 LQM-NLAVNNFKFDISNISVFPGLNCL 376
+ +L+ N DI + P L L
Sbjct: 138 VNSIDLSYNGAITDIMPLKTLPELKSL 164
|
| >3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 2qlu_A* Length = 322 | Back alignment and structure |
|---|
Score = 84.0 bits (208), Expect = 1e-17
Identities = 18/117 (15%), Positives = 36/117 (30%), Gaps = 12/117 (10%)
Query: 680 YGYLAPEYAMRGHL-----TEKADVFSFGVVALEIISGRASSDKSLDMEKIYLLEWAWNL 734
Y+APE + D+++ G+V E+ S ++D +D + E
Sbjct: 197 RRYMAPEVLEGAINFQRDAFLRIDMYAMGLVLWELASRCTAADGPVDEYMLPFEEEIGQH 256
Query: 735 HENNQSFGLV-----DPTLTE-FNDKEALRVIG-VALLCTQTSPMMRPPMSRVVAML 784
+V P L + + + ++ C R V +
Sbjct: 257 PSLEDMQEVVVHKKKRPVLRDYWQKHAGMAMLCETIEECWDHDAEARLSAGCVGERI 313
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 84.8 bits (210), Expect = 2e-17
Identities = 63/339 (18%), Positives = 106/339 (31%), Gaps = 73/339 (21%)
Query: 66 HITKLRVYGLNKKGVIPEE-LVTLQYLTVLKIDQNFFTGPLPS--FIGNLSRLMFLSFSH 122
H+ + + N + E LQ L LK++Q + + F LS L+ L +
Sbjct: 31 HVNYVDLSL-NSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTF-RGLSSLIILKLDY 88
Query: 123 NDFSGPVPRELGNLKELTVLAFGTNNF-SGALPPEL-GNLAKLEQLY-----IDSCGAGG 175
N F L L VL N L L LE L I
Sbjct: 89 NQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPAS 148
Query: 176 EIPSTFAKLRNMQTLWASDNPFT-------------------------GKIPDFIGNW-- 208
F +R L + N + ++ W
Sbjct: 149 ----FFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEK 204
Query: 209 -------TKLKSLRFQGNSFQGPIPSSLSKLAS---LESLQMSDIYNVSSSLDF------ 252
T + +L GN F+ + + ++SL +S+ YN+ SS
Sbjct: 205 CGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDP 264
Query: 253 ------VMSLKNLTDLSLRNALITGTIPFGI-GELQMLQILDLSFNNLTGQIPATLF-NI 304
+ + L + I + + L+ L L+ N + +I F +
Sbjct: 265 DNFTFKGLEASGVKTCDLSKSKIF-ALLKSVFSHFTDLEQLTLAQNEIN-KIDDNAFWGL 322
Query: 305 DSLEYLFLGNNSLSGTLPD---QKSENLQKIDLSHNHLS 340
L L L N L ++ + + L+ +DLS+NH+
Sbjct: 323 THLLKLNLSQNFLG-SIDSRMFENLDKLEVLDLSYNHIR 360
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 73.2 bits (180), Expect = 1e-13
Identities = 65/333 (19%), Positives = 108/333 (32%), Gaps = 68/333 (20%)
Query: 66 HITKLRVYGLNKKGVIPEE-LVTLQYLTVLKIDQNFFTG-PLPSFI-GNLSRLMFLSFSH 122
+ L++ N+ + L L VL + Q G L L+ L L
Sbjct: 80 SLIILKLDY-NQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRD 138
Query: 123 NDFSGPVPREL-GNLKELTVLAFGTNNFSGALPPELGNLAKLEQLY----------IDSC 171
N+ P N++ VL N +L N ++
Sbjct: 139 NNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEY 198
Query: 172 GAGGEIPSTFAKLRNMQTLWASDNPFTGKIPD---------------------------- 203
G E K ++ TL S N F +
Sbjct: 199 WLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGH 258
Query: 204 ----------FIG-NWTKLKSLRFQGNSFQGPIPSSLSKLASLESLQMSDIYNVSSSLD- 251
F G + +K+ + + S S LE L ++ N + +D
Sbjct: 259 TNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLA--QNEINKIDD 316
Query: 252 --FVMSLKNLTDLSLRNALITGTIPFGI-GELQMLQILDLSFNNLTGQIPATLF-NIDSL 307
F L +L L+L + +I + L L++LDLS+N++ + F + +L
Sbjct: 317 NAFW-GLTHLLKLNLSQNFLG-SIDSRMFENLDKLEVLDLSYNHIR-ALGDQSFLGLPNL 373
Query: 308 EYLFLGNNSLSGTLPD---QKSENLQKIDLSHN 337
+ L L N L ++PD + +LQKI L N
Sbjct: 374 KELALDTNQLK-SVPDGIFDRLTSLQKIWLHTN 405
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 72.9 bits (179), Expect = 1e-13
Identities = 49/301 (16%), Positives = 84/301 (27%), Gaps = 53/301 (17%)
Query: 91 LTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPREL-GNLKELTVLAFGTNNF 149
+ + + N + L L FL + L L +L N F
Sbjct: 32 VNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQF 91
Query: 150 SGALPPE-LGNLAKLEQLYIDSCG-AGGEIPS-TFAKLRNMQTLWASDNPFTGKIPD-FI 205
L LA LE L + C G + F L +++ L DN P F
Sbjct: 92 L-QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFF 150
Query: 206 GNWTKLKSLRFQGNSFQGPIPSSLSKLASLESLQMSDIYNVSSSLDFVMSLKNLTDLSLR 265
N + L N + L + T L L
Sbjct: 151 LNMRRFHVLDLTFNKVKSICEEDLLNFQGK----------------------HFTLLRLS 188
Query: 266 NALITGTIPFGIGELQMLQILDLSFNNLTGQIPATLFNIDSLEYLFLGNNSLSGTLPDQK 325
+ + + D++ L + F S+ L L N ++ +
Sbjct: 189 S----------------ITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRF 232
Query: 326 SENLQKIDLSHNHLSGTFPLWVNSELQMNLAVNNFKFDISNISVFPGLNCLQ-RNFTCNR 384
+ + + LS + + + NFK D N + F GL + ++
Sbjct: 233 FDAIAGTKIQSLILSN------SYNMGSSFGHTNFK-DPDNFT-FKGLEASGVKTCDLSK 284
Query: 385 N 385
+
Sbjct: 285 S 285
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 64.0 bits (156), Expect = 1e-10
Identities = 51/280 (18%), Positives = 88/280 (31%), Gaps = 45/280 (16%)
Query: 48 NNNPAIVCNCTFDNGATCHITKLRVYGLNKKGVIPEELVTLQYLTVLKIDQNFFTGPLPS 107
N +C N H T LR L +T+ +++ +
Sbjct: 163 FNKVKSICEEDLLNFQGKHFTLLR----------------LSSITLQDMNEYWLGWEKCG 206
Query: 108 FIGNLSRLMFLSFSHNDFSGPVPRELGNLKELTVLAFGTNNFSGALPPELG--NLAKLEQ 165
+ + L S N F + + + T + + S + G N +
Sbjct: 207 NPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDN 266
Query: 166 LYIDSCGAGGEIPSTFAKLR--NMQTLWASDNPFTGKIPDFI-GNWTKLKSLRFQGNSFQ 222
TF L ++T S + + + ++T L+ L N
Sbjct: 267 F-------------TFKGLEASGVKTCDLSKSKIF-ALLKSVFSHFTDLEQLTLAQNEIN 312
Query: 223 GPIPSSLSKLASLESLQMSDIYNVSSSLD---FVMSLKNLTDLSLRNALITGTIPFGI-G 278
++ L L L +S N S+D F +L L L L I +
Sbjct: 313 KIDDNAFWGLTHLLKLNLS--QNFLGSIDSRMFE-NLDKLEVLDLSYNHIR-ALGDQSFL 368
Query: 279 ELQMLQILDLSFNNLTGQIPATLF-NIDSLEYLFLGNNSL 317
L L+ L L N L +P +F + SL+ ++L N
Sbjct: 369 GLPNLKELALDTNQLKS-VPDGIFDRLTSLQKIWLHTNPW 407
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 45.1 bits (107), Expect = 8e-05
Identities = 36/156 (23%), Positives = 61/156 (39%), Gaps = 10/156 (6%)
Query: 47 PNNNPAIVCNCTFDNGATCHITKLRVYGLNKKGVIPEEL-VTLQYLTVLKIDQNFFTGPL 105
+ N N TF + + +K + + + L L + QN +
Sbjct: 257 GHTNFKDPDNFTFKGLEASGVKTCDLSK-SKIFALLKSVFSHFTDLEQLTLAQNEIN-KI 314
Query: 106 PS--FIGNLSRLMFLSFSHNDFSGPVPRELGNLKELTVLAFGTNNFSGALPPEL-GNLAK 162
F G L+ L+ L+ S N R NL +L VL N+ AL + L
Sbjct: 315 DDNAFWG-LTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIR-ALGDQSFLGLPN 372
Query: 163 LEQLYIDSCGAGGEIPS-TFAKLRNMQTLWASDNPF 197
L++L +D+ +P F +L ++Q +W NP+
Sbjct: 373 LKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNPW 407
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 | Back alignment and structure |
|---|
Score = 79.1 bits (195), Expect = 7e-16
Identities = 56/293 (19%), Positives = 91/293 (31%), Gaps = 45/293 (15%)
Query: 51 PAIVCNCTFDNGATCHITKLRVYGLNKKGVIPEELVTLQYLTVLKIDQNFFTGPLPSFIG 110
+C+C+ + C +K+ IP +L + L+
Sbjct: 3 HHRICHCS-NRVFLCQESKVTE--------IPSDL--PRNAIELRFVLTKLRVIQKGAFS 51
Query: 111 NLSRLMFLSFSHNDFSGPVPRE-LGNLKELTVLAFGTNNFSGALPPE-LGNLAKLEQLYI 168
L + S ND + + NL +L + N + PE NL L+ L I
Sbjct: 52 GFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLI 111
Query: 169 DSCGAGGEIPS-TFAKLRNMQTLWASDNPFTGKIPD--FIGNWTKLKSLRFQGNSFQGPI 225
+ G +P L DN I F+G + L N Q I
Sbjct: 112 SNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE-I 169
Query: 226 PSSLSKLASLESLQMSDIYNVSSSLDFVMSLKNLTDLSLRNALITGTIPFGIGELQMLQI 285
+S L+ L +SD N +L+ L + I
Sbjct: 170 HNSAFNGTQLDELNLSD-NN---------NLEELPNDVFHG-------------ASGPVI 206
Query: 286 LDLSFNNLTGQIPATLF-NIDSLEYLFLGNNSLSGTLPDQKSENLQKIDLSHN 337
LD+S + +P+ N+ L N TL +K L + L++
Sbjct: 207 LDISRTRIH-SLPSYGLENLKKLRARSTYNLKKLPTL--EKLVALMEASLTYP 256
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 | Back alignment and structure |
|---|
Score = 66.8 bits (163), Expect = 8e-12
Identities = 53/340 (15%), Positives = 95/340 (27%), Gaps = 81/340 (23%)
Query: 83 EELVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKELTVL 142
+ Q V +I + + L F +L +
Sbjct: 11 NRVFLCQESKVTEIPSDLPRN-----------AIELRFVLTKLRVIQKGAFSGFGDLEKI 59
Query: 143 AFGTNNFSGALPPE-LGNLAKLEQLYIDSCGAGGEIPS-TFAKLRNMQTLWASDNPFTGK 200
N+ + + NL KL ++ I+ I F L N+Q L S+
Sbjct: 60 EISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIK-H 118
Query: 201 IPD--FIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLESLQMSDIYNVSSSLDFVMSLKN 258
+PD I + + L Q N + ++E S
Sbjct: 119 LPDVHKIHS-LQKVLLDIQDNI----------NIHTIER----------------NSFVG 151
Query: 259 LTDLSLRNALITGTIPFGIGELQMLQILDLSFNNLTGQIPATLFN-IDSLEYLFLGNNSL 317
L+ IL L+ N + +I + FN E NN+L
Sbjct: 152 LSFE--------------------SVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNL 190
Query: 318 SGTLPD---QKSENLQKIDLSHNHLSGTFPLWVNSELQMNLAVNNFKFDISNISVFPGLN 374
LP+ + +D+S + + P + L+ A + + + + L
Sbjct: 191 E-ELPNDVFHGASGPVILDISRTRIH-SLPSYGLENLKKLRARSTYN--LKKLPTLEKLV 246
Query: 375 CLQR-NFTCNRNAPQCKLPSLCCLHPEMRADNIVYEGDNS 413
L + T C C R + ++ N
Sbjct: 247 ALMEASLTYPS---HC-----CAFANWRRQISELHPICNK 278
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 77.0 bits (190), Expect = 2e-15
Identities = 50/227 (22%), Positives = 84/227 (37%), Gaps = 18/227 (7%)
Query: 157 LGNLAKLEQLYIDSCGAGGEIPSTFAKLRNMQTLWASDNPFTGKIPDFIGNWTKLKSLRF 216
A+ + + T +L ++ + A+++ + I + L
Sbjct: 20 DDAFAETIKDNLKKKSVTDA--VTQNELNSIDQIIANNSDIK-SV-QGIQYLPNVTKLFL 75
Query: 217 QGNSFQGPIP--SSLSKLASLESLQMSDIYNVSSSLDFVMSLKNLTDLSLRNALITGTIP 274
GN + L+ L +L L + N L + LK L LSL + I+ I
Sbjct: 76 NGN----KLTDIKPLANLKNLGWLFLD--ENKVKDLSSLKDLKKLKSLSLEHNGIS-DIN 128
Query: 275 FGIGELQMLQILDLSFNNLTGQIPATLFNIDSLEYLFLGNNSLSGTLPDQKSENLQKIDL 334
G+ L L+ L L N +T I L + L+ L L +N +S +P LQ + L
Sbjct: 129 -GLVHLPQLESLYLGNNKIT-DITV-LSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYL 185
Query: 335 SHNHLSGTFPLWVNSELQ-MNLAVNNF-KFDISNISVFPGLNCLQRN 379
S NH+S L L + L I++ S N ++
Sbjct: 186 SKNHISDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNT 232
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 75.1 bits (185), Expect = 7e-15
Identities = 45/260 (17%), Positives = 95/260 (36%), Gaps = 28/260 (10%)
Query: 83 EELVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHN---DFSGPVPRELGNLKEL 139
+ + T L+ + + +++ G + L +
Sbjct: 18 FSDDAFAETIKDNLKKKSVTDA--VTQNELNSIDQIIANNSDIKSVQG-----IQYLPNV 70
Query: 140 TVLAFGTNNFSGALPPELGNLAKLEQLYIDSCGAGGEIP--STFAKLRNMQTLWASDNPF 197
T L N + + P L NL L L++D ++ S+ L+ +++L N
Sbjct: 71 TKLFLNGNKLT-DIKP-LANLKNLGWLFLDEN----KVKDLSSLKDLKKLKSLSLEHNGI 124
Query: 198 TGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLESLQMSDIYNVSSSLDFVMSLK 257
+ I + + + +L+SL N + + LS+L L++L + D N S + + L
Sbjct: 125 S-DI-NGLVHLPQLESLYLGNN--KITDITVLSRLTKLDTLSLED--NQISDIVPLAGLT 178
Query: 258 NLTDLSLRNALITGTIPFGIGELQMLQILDLSFNNLTGQIPATLFNIDSLEYLFLGNNSL 317
L +L L I+ + + L+ L +L+L + N+ + + SL
Sbjct: 179 KLQNLYLSKNHIS-DLR-ALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL 236
Query: 318 SGTLPDQKSENLQKIDLSHN 337
P+ S++ +
Sbjct: 237 --VTPEIISDDGDYEKPNVK 254
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 76.2 bits (188), Expect = 3e-15
Identities = 48/216 (22%), Positives = 80/216 (37%), Gaps = 28/216 (12%)
Query: 139 LTVLAFGTNNFSGALPPE-LGNLAKLEQLYIDSCGAGGEI----PSTFAKLRNMQTLWAS 193
L N L + +L+ L + C EI + L ++ TL +
Sbjct: 30 TKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRC----EIQTIEDGAYQSLSHLSTLILT 84
Query: 194 DNPFTGKIPDFI-GNWTKLKSLRFQGNSFQGPIPSSL-SKLASLESLQMSD--IYNVSSS 249
NP + + L+ L + + + L +L+ L ++ I +
Sbjct: 85 GNPIQ-SLALGAFSGLSSLQKLVAVETNLAS-LENFPIGHLKTLKELNVAHNLIQSFKLP 142
Query: 250 LDFVMSLKNLTDLSLRNALITGTIPFGI----GELQMLQI-LDLSFNNLTGQIPATLFNI 304
F +L NL L L + I +I ++ +L + LDLS N + I F
Sbjct: 143 EYFS-NLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKE 199
Query: 305 DSLEYLFLGNNSLSGTLPD---QKSENLQKIDLSHN 337
L+ L L N L ++PD + +LQKI L N
Sbjct: 200 IRLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTN 234
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 70.8 bits (174), Expect = 2e-13
Identities = 51/213 (23%), Positives = 79/213 (37%), Gaps = 26/213 (12%)
Query: 118 LSFSHNDFSGPVPRELGNLKELTVLAFGTNNFSGALPPEL-GNLAKLEQLY-----IDSC 171
L S N + EL VL + +L+ L L I S
Sbjct: 33 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSL 91
Query: 172 GAGGEIPSTFAKLRNMQTLWASDNPFTGKIPDFI-GNWTKLKSLRFQGNSFQG-PIPSSL 229
G F+ L ++Q L A + + +F G+ LK L N Q +P
Sbjct: 92 ALG-----AFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYF 145
Query: 230 SKLASLESLQMSD--IYNVSSSLDFVMSLKNLTDLSLRNAL----ITGTIPFGIGELQML 283
S L +LE L +S I ++ + D L + L+L L + I G + L
Sbjct: 146 SNLTNLEHLDLSSNKIQSIYCT-DLR-VLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRL 202
Query: 284 QILDLSFNNLTGQIPATLF-NIDSLEYLFLGNN 315
+ L L N L +P +F + SL+ ++L N
Sbjct: 203 KELALDTNQLK-SVPDGIFDRLTSLQKIWLHTN 234
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 65.8 bits (161), Expect = 9e-12
Identities = 41/175 (23%), Positives = 65/175 (37%), Gaps = 18/175 (10%)
Query: 178 PSTFAKLRNMQTLWASDNPFTGKIPD--FIGNWTKLKSLRFQGNSFQGPIPSSLSKLASL 235
+F +Q L S I D + + L +L GN Q + S L+SL
Sbjct: 45 SYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSL-SHLSTLILTGNPIQSLALGAFSGLSSL 102
Query: 236 ESLQMSDIYNVSSSLDFVM--SLKNLTDLSLRNALITGTIPFGI-GELQMLQILDLSFNN 292
+ L +SL+ LK L +L++ + LI L L+ LDLS N
Sbjct: 103 QKLVAV--ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK 160
Query: 293 LTGQIPATLF-NIDSLEY----LFLGNNSLSGTLPDQ--KSENLQKIDLSHNHLS 340
+ I T + + L L N ++ + K L+++ L N L
Sbjct: 161 IQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLKELALDTNQLK 213
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 55.7 bits (135), Expect = 1e-08
Identities = 39/171 (22%), Positives = 69/171 (40%), Gaps = 32/171 (18%)
Query: 225 IPSSLSKLASLESLQMSDIYNVSSSL---DFVMSLKNLTDLSLRNALITGTIPFGI-GEL 280
IP +L S ++L +S +N L F S L L L I TI G L
Sbjct: 22 IPDNLP--FSTKNLDLS--FNPLRHLGSYSFF-SFPELQVLDLSRCEIQ-TIEDGAYQSL 75
Query: 281 QMLQILDLSFNNLTGQIPATLF-NIDSLEYLFLGNNSLSGTLPD---QKSENLQKIDLSH 336
L L L+ N + + F + SL+ L +L+ +L + + L++++++H
Sbjct: 76 SHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAH 133
Query: 337 NHLS-----GTFP-LWVNSELQ-MNLAVNNFKFDISNIS--VFPGLNCLQR 378
N + F L + L+ ++L+ N I +I L+ +
Sbjct: 134 NLIQSFKLPEYFSNL---TNLEHLDLSSNK----IQSIYCTDLRVLHQMPL 177
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 | Back alignment and structure |
|---|
Score = 72.0 bits (177), Expect = 3e-14
Identities = 37/221 (16%), Positives = 74/221 (33%), Gaps = 20/221 (9%)
Query: 105 LPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKELTVLAFGTNNFSGALPPEL-GNLAKL 163
+PS + L NL ++ + + L NL+K+
Sbjct: 26 IPSLPPSTQTL---KLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKV 82
Query: 164 EQLYIDSCGAGGEIPS-TFAKLRNMQTLWASDNPFTGKIPD--FIGNWTKLKSLRFQGNS 220
+ I + I +L ++ L + PD + + L N
Sbjct: 83 THIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNP 141
Query: 221 FQGPIPS-SLSKLAS-LESLQMSDIYNVSSSL-DFVMSLKNLTDLSL-RNALITGTIPFG 276
+ IP + L + +L++ N +S+ + + L + L +N +T I
Sbjct: 142 YMTSIPVNAFQGLCNETLTLKLY--NNGFTSVQGYAFNGTKLDAVYLNKNKYLT-VIDKD 198
Query: 277 I--GELQMLQILDLSFNNLTGQIPATLFNIDSLEYLFLGNN 315
G +LD+S ++T +P+ + L+ L N
Sbjct: 199 AFGGVYSGPSLLDVSQTSVT-ALPSKGL--EHLKELIARNT 236
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 | Back alignment and structure |
|---|
Score = 64.6 bits (158), Expect = 1e-11
Identities = 33/213 (15%), Positives = 63/213 (29%), Gaps = 36/213 (16%)
Query: 138 ELTVLAFGTNNFSGALPPE-LGNLAKLEQLYIDSCGAGGEIPS-TFAKLRNMQTLWASDN 195
L + +P NL + ++Y+ ++ S +F L + + +
Sbjct: 32 STQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNT 90
Query: 196 PFTGKIPD--FIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLESLQMSDIYNVSSSLDFV 253
I LK L + P L+K+ S + + +I +
Sbjct: 91 RNLTYIDPDALKEL-PLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITD-------- 139
Query: 254 MSLKNLTDLSLRNALITGTIPFGI--GELQMLQILDLSFNNLTGQIPATLFNIDSLEYLF 311
N +T +IP G L L N T + FN L+ ++
Sbjct: 140 ------------NPYMT-SIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVY 185
Query: 312 LGNNSLSGTLP----DQKSENLQKIDLSHNHLS 340
L N + +D+S ++
Sbjct: 186 LNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT 218
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 | Back alignment and structure |
|---|
Score = 56.9 bits (138), Expect = 4e-09
Identities = 30/170 (17%), Positives = 58/170 (34%), Gaps = 13/170 (7%)
Query: 176 EIPSTFAKLRNMQTLWASDNPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPS-SLSKLAS 234
IPS + QTL + N + + + + S S L+
Sbjct: 25 RIPS---LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSK 81
Query: 235 LESLQMSDIYNVSS-SLDFVMSLKNLTDLSLRNALITGTIPFG--IGELQMLQILDLSFN 291
+ +++ + N++ D + L L L + N + P + + IL+++ N
Sbjct: 82 VTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDN 140
Query: 292 NLTGQIPATLFN--IDSLEYLFLGNNSLSGTLPDQ--KSENLQKIDLSHN 337
IP F + L L NN + ++ L + L+ N
Sbjct: 141 PYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKN 189
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
Score = 74.8 bits (183), Expect = 5e-14
Identities = 38/221 (17%), Positives = 72/221 (32%), Gaps = 26/221 (11%)
Query: 130 PRELGNLKELTVLAFGTNNFSGALPPELGNLAKLEQLYIDSCGAGGEIPSTFAKLRNMQT 189
R+ ++L + S L EL + +L++L ++ I L +
Sbjct: 342 CRDSATDEQLFRCEL-SVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLY 400
Query: 190 L---WASDNPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLESLQMSDIYNV 246
+ P L+S NS + + L L ++ + ++
Sbjct: 401 EKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVL-HLAHKDLTVLCHL 459
Query: 247 SSSLDFVMSLKNLTDLSLRNALITGTIPFGIGELQMLQILDLSFNNLTGQIPATLFNID- 305
L +T L L + + +P + L+ L++L S N L + +
Sbjct: 460 EQ-------LLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-----NVDGVAN 506
Query: 306 --SLEYLFLGNNSLSGTLPDQKS----ENLQKIDLSHNHLS 340
L+ L L NN L + L ++L N L
Sbjct: 507 LPRLQELLLCNNRLQ-QSAAIQPLVSCPRLVLLNLQGNSLC 546
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 70.1 bits (172), Expect = 3e-13
Identities = 34/136 (25%), Positives = 56/136 (41%), Gaps = 9/136 (6%)
Query: 209 TKLKSLRFQGNSFQGPIPSSLSKLASLESLQMSDIYNVSSSLDFVMSLKNLTDLSLRNAL 268
L N ++L L L + + L +L L L L +
Sbjct: 31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDR--AELTKLQVDGTLPVLGTLDLSHNQ 88
Query: 269 ITGTIPFGIGELQMLQILDLSFNNLTGQIPATLF-NIDSLEYLFLGNNSLSGTLPD---Q 324
+ ++P L L +LD+SFN LT +P + L+ L+L N L TLP
Sbjct: 89 LQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELK-TLPPGLLT 145
Query: 325 KSENLQKIDLSHNHLS 340
+ L+K+ L++N+L+
Sbjct: 146 PTPKLEKLSLANNNLT 161
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 67.1 bits (164), Expect = 3e-12
Identities = 47/201 (23%), Positives = 63/201 (31%), Gaps = 34/201 (16%)
Query: 118 LSFSHNDFSGPVPRELGNLKELTVLAFGTNNFSGALPPELGNLAKLEQLYIDSCGAGGEI 177
L S N L LT L + G L L L + +
Sbjct: 36 LHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL--QVDGTLPVLGTLDLSHNQLQ-SL 92
Query: 178 PSTFAKLRNMQTLWASDNPFTGKIPD--FIGNWTKLKSLRFQGNSFQGPIPSSLSKLASL 235
P L + L S N T +P G +L+ L +GN +L +L
Sbjct: 93 PLLGQTLPALTVLDVSFNRLT-SLPLGALRG-LGELQELYLKGN-----------ELKTL 139
Query: 236 ESLQMSDIYNVSSSLDFVMSLKNLTDLSLRNALITGTIPFGI-GELQMLQILDLSFNNLT 294
L L LSL N +T +P G+ L+ L L L N+L
Sbjct: 140 P----------PGLLT---PTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLY 185
Query: 295 GQIPATLFNIDSLEYLFLGNN 315
IP F L + FL N
Sbjct: 186 T-IPKGFFGSHLLPFAFLHGN 205
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 65.5 bits (160), Expect = 1e-11
Identities = 46/170 (27%), Positives = 65/170 (38%), Gaps = 17/170 (10%)
Query: 186 NMQTLWASDNPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLESLQMSDIYN 245
+ L S+N + +T+L L + L L +L +S +N
Sbjct: 32 DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQVD-GTLPVLGTLDLS--HN 87
Query: 246 VSSSLDFV-MSLKNLTDLSLRNALITGTIPFGI-GELQMLQILDLSFNNLTGQIPATLF- 302
SL + +L LT L + +T ++P G L LQ L L N L +P L
Sbjct: 88 QLQSLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELK-TLPPGLLT 145
Query: 303 NIDSLEYLFLGNNSLSGTLPD---QKSENLQKIDLSHNHLS----GTFPL 345
LE L L NN+L+ LP ENL + L N L G F
Sbjct: 146 PTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLYTIPKGFFGS 194
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 46.3 bits (110), Expect = 2e-05
Identities = 20/84 (23%), Positives = 30/84 (35%), Gaps = 5/84 (5%)
Query: 258 NLTDLSLRNALITGTIPFGIGELQMLQILDLSFNNLTGQIPATLF-NIDSLEYLFLGNNS 316
+ +++ +T +P + + IL LS N L L L L
Sbjct: 11 SHLEVNCDKRNLT-ALPPDL--PKDTTILHLSENLLY-TFSLATLMPYTRLTQLNLDRAE 66
Query: 317 LSGTLPDQKSENLQKIDLSHNHLS 340
L+ D L +DLSHN L
Sbjct: 67 LTKLQVDGTLPVLGTLDLSHNQLQ 90
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 45.1 bits (107), Expect = 5e-05
Identities = 42/174 (24%), Positives = 55/174 (31%), Gaps = 19/174 (10%)
Query: 58 TFDNGATCHITKLRVYGL--NKKGVIPEELVTLQYLTVLKIDQNFFTGPLPSFIGNLSRL 115
TF T+L L + + + TL L L + N LP L L
Sbjct: 45 TFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLDLSHNQLQS-LPLLGQTLPAL 102
Query: 116 MFLSFSHNDFSGPVPRELGNLKELTVLAFGTNNFSGALPPEL-GNLAKLEQLY-----ID 169
L S N + L L EL L N LPP L KLE+L +
Sbjct: 103 TVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNLT 161
Query: 170 SCGAGGEIPS-TFAKLRNMQTLWASDNPFTGKIPDFIGNWTKLKSLRFQGNSFQ 222
+P+ L N+ TL +N IP L GN +
Sbjct: 162 E------LPAGLLNGLENLDTLLLQENSLYT-IPKGFFGSHLLPFAFLHGNPWL 208
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263 | Back alignment and structure |
|---|
Score = 69.7 bits (171), Expect = 3e-13
Identities = 34/174 (19%), Positives = 63/174 (36%), Gaps = 13/174 (7%)
Query: 205 IGNWTKLKSLRFQGNSFQGPIPSSLSKLASLESLQMSDIYNVSSSLDFVMSLKNLTDLSL 264
S S +L+ +++ + SL + NL +L L
Sbjct: 15 DPGLANAVKQNLGKQSVTDL--VSQKELSGVQNFNGD--NSNIQSLAGMQFFTNLKELHL 70
Query: 265 RNALITGTIPFGIGELQMLQILDLSFNNLTGQIPATLFNID--SLEYLFLGNNSLSGTLP 322
+ I+ + + +L L+ L ++ N L L I L LFL NN L T
Sbjct: 71 SHNQIS-DLS-PLKDLTKLEELSVNRNRLK-----NLNGIPSACLSRLFLDNNELRDTDS 123
Query: 323 DQKSENLQKIDLSHNHLSGTFPLWVNSELQMNLAVNNFKFDISNISVFPGLNCL 376
+NL+ + + +N L L S+L++ N + ++ +N +
Sbjct: 124 LIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEITNTGGLTRLKKVNWI 177
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263 | Back alignment and structure |
|---|
Score = 68.1 bits (167), Expect = 1e-12
Identities = 38/234 (16%), Positives = 75/234 (32%), Gaps = 32/234 (13%)
Query: 107 SFIGNLSRLMFLSFSHNDFSGPVPRELGNLKELTVLAFGTNNFSGALPPELGNLAKLEQL 166
L+ + + + V L + +N +L + L++L
Sbjct: 13 FPDPGLANAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNSNIQ-SLAG-MQFFTNLKEL 68
Query: 167 YIDSCGAGGEIP--STFAKLRNMQTLWASDNPFTGKIPDFIG-NWTKLKSLRFQGNSFQG 223
++ +I S L ++ L + N ++ + G L L N +
Sbjct: 69 HLSHN----QISDLSPLKDLTKLEELSVNRN----RLKNLNGIPSACLSRLFLDNNELRD 120
Query: 224 PIPSSLSKLASLESLQMSDIYNVSSSLDFVMSLKNLTDLSLRNALITGTIPFGIGELQML 283
SL L +LE L + + N S+ + L L L L IT G+ L+ +
Sbjct: 121 T--DSLIHLKNLEILSIRN--NKLKSIVMLGFLSKLEVLDLHGNEIT-NTG-GLTRLKKV 174
Query: 284 QILDLSFNNLTGQIPATLFNIDSLEYLFLGNNSLSGTLPDQKSENLQKIDLSHN 337
+DL+ + L++ N + D + +S+
Sbjct: 175 NWIDLTGQKC------VNEPVKYQPELYITNT-----VKDPDGRWISPYYISNG 217
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263 | Back alignment and structure |
|---|
Score = 55.4 bits (134), Expect = 2e-08
Identities = 21/130 (16%), Positives = 48/130 (36%), Gaps = 8/130 (6%)
Query: 248 SSLDFVMSLKNLTDLSLRNALITGTIPFGIGELQMLQILDLSFNNLTGQIPATLFNIDSL 307
+ + L N +L +T + EL +Q + +N+ + + +L
Sbjct: 10 NQVFPDPGLANAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNSNIQ-SLAG-MQFFTNL 65
Query: 308 EYLFLGNNSLSGTLPDQKSENLQKIDLSHNHLSGTFPLWVNSELQMNLAVNNFKFDISNI 367
+ L L +N +S P + L+++ ++ N L + ++ L N + +
Sbjct: 66 KELHLSHNQISDLSPLKDLTKLEELSVNRNRLKNLNGIPSACLSRLFLDNNE----LRDT 121
Query: 368 SVFPGLNCLQ 377
L L+
Sbjct: 122 DSLIHLKNLE 131
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 69.5 bits (170), Expect = 2e-12
Identities = 46/291 (15%), Positives = 89/291 (30%), Gaps = 22/291 (7%)
Query: 88 LQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKELTVLAFGTN 147
L + LS + + + L +
Sbjct: 201 LVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLN-VTLQHI 259
Query: 148 NFSGALPPELGNLAK---LEQLYIDSC-----GAGGEIPSTFAKLRNMQTLWASDNPFTG 199
+ +L +E L I + E + L+++ + F
Sbjct: 260 ETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFL- 318
Query: 200 KIPDFIGNW-TKLKSLRFQGNSFQGPIPSSLSKLASLESLQMSDIYNVSSSLDFVM--SL 256
+ + + ++ + +S L + NV + F +L
Sbjct: 319 FSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFT--QNVFTDSVFQGCSTL 376
Query: 257 KNLTDLSLR-NALITGTIPFGI-GELQMLQILDLSFNNLTGQIPATLFNI-DSLEYLFLG 313
K L L L+ N L + + L+ LD+S N+L +S+ L L
Sbjct: 377 KRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLS 436
Query: 314 NNSLSGTLPDQKSENLQKIDLSHNHLSGTFPLWVN--SELQM-NLAVNNFK 361
+N L+G++ ++ +DL +N + + P V LQ N+A N K
Sbjct: 437 SNMLTGSVFRCLPPKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK 486
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 59.1 bits (143), Expect = 4e-09
Identities = 50/300 (16%), Positives = 86/300 (28%), Gaps = 38/300 (12%)
Query: 91 LTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKELTVLAFGTNNFS 150
L + QN + I LS L L SHN ++L L N
Sbjct: 54 TKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ 113
Query: 151 GALPPELGNLAKLEQLY-----IDSCGAGGEIPSTFAKLRNMQTLWASDNPFTGKIP--D 203
+ +A L L D E F L + L S F ++
Sbjct: 114 -NISC--CPMASLRHLDLSFNDFDVLPVCKE----FGNLTKLTFLGLSAAKFR-QLDLLP 165
Query: 204 FIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLESLQMSDIYNVSSSLDFVMSLKNLTDLS 263
L +G SL + L + N S+ MS+ L L
Sbjct: 166 VAHLHLSCILLDLVSYHIKGGETESLQIP-NTTVLHLVFHPNSLFSVQVNMSVNALGHLQ 224
Query: 264 LRNALITGTIPFGIGELQMLQILDLSFNNLTGQIPAT----------LFNIDSLEYLFLG 313
L N + + + N+T Q T F +EYL +
Sbjct: 225 LSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIY 284
Query: 314 NNSLSG-------TLPDQKSENLQKIDLSHNHL----SGTFPLWVNSELQMNLAVNNFKF 362
N +++ T + ++L + + + ++ + L++++ F
Sbjct: 285 NLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNI-KMLSISDTPF 343
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198 | Back alignment and structure |
|---|
Score = 59.3 bits (144), Expect = 4e-10
Identities = 25/114 (21%), Positives = 52/114 (45%), Gaps = 7/114 (6%)
Query: 228 SLSKLASLE-SLQMSDIYNVSSSLDFVMSLKNLTDLSLRNALITGTIPFGIGELQMLQIL 286
++ +E + I + ++L +LK L+L I I + ++ L+IL
Sbjct: 21 VATEAEKVELHGMIPPIEKMDATLS---TLKACKHLALSTNNIE-KIS-SLSGMENLRIL 75
Query: 287 DLSFNNLTGQIPATLFNIDSLEYLFLGNNSLSGTLPDQKSENLQKIDLSHNHLS 340
L N + +I D+LE L++ N ++ +K NL+ + +S+N ++
Sbjct: 76 SLGRNLIK-KIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLYMSNNKIT 128
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270 | Back alignment and structure |
|---|
Score = 60.0 bits (146), Expect = 6e-10
Identities = 39/140 (27%), Positives = 60/140 (42%), Gaps = 14/140 (10%)
Query: 209 TKLKSLRFQGNSFQGPIPSSLSKLASLESLQMSDIYNVSSSLD---FVMSLKNLTDLSLR 265
K L Q N + +L L L ++ N +L F LKNL L +
Sbjct: 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLN--DNKLQTLPAGIFK-ELKNLETLWVT 93
Query: 266 NALITGTIPFGI-GELQMLQILDLSFNNLTGQIPATLF-NIDSLEYLFLGNNSLSGTLPD 323
+ + +P G+ +L L L L N L +P +F ++ L YL LG N L +LP
Sbjct: 94 DNKLQ-ALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQ-SLPK 150
Query: 324 ---QKSENLQKIDLSHNHLS 340
K +L+++ L +N L
Sbjct: 151 GVFDKLTSLKELRLYNNQLK 170
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270 | Back alignment and structure |
|---|
Score = 58.8 bits (143), Expect = 1e-09
Identities = 49/203 (24%), Positives = 74/203 (36%), Gaps = 34/203 (16%)
Query: 118 LSFSHNDFSGPVPRELGNLKELTVLAFGTNNFSGALPPEL-GNLAKLEQLYIDSCGAGGE 176
L N S + L +L +L N LP + L LE L++
Sbjct: 42 LDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQ-A 99
Query: 177 IPS-TFAKLRNMQTLWASDNPFTGKIPDFI-GNWTKLKSLRFQGNSFQGPIPSSLSKLAS 234
+P F +L N+ L N +P + + TKL L N +L S
Sbjct: 100 LPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYN-----------ELQS 147
Query: 235 LESLQMSDIYNVSSSLDFVMSLKNLTDLSLRNALITGTIPFGI-GELQMLQILDLSFNNL 293
L V F L +L +L L N + +P G +L L+ L L N L
Sbjct: 148 LPK-------GV-----FD-KLTSLKELRLYNNQLK-RVPEGAFDKLTELKTLKLDNNQL 193
Query: 294 TGQIPATLF-NIDSLEYLFLGNN 315
++P F +++ L+ L L N
Sbjct: 194 K-RVPEGAFDSLEKLKMLQLQEN 215
|
| >3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens} Length = 336 | Back alignment and structure |
|---|
Score = 59.5 bits (144), Expect = 2e-09
Identities = 24/159 (15%), Positives = 47/159 (29%), Gaps = 27/159 (16%)
Query: 646 FGYAELRSATKDFNRSNKLGEGGYGPVYKV-TANSYGYLAPEYAM-------RGHLTEKA 697
FG + NR + GE + +V T Y+APE ++
Sbjct: 164 FGLS----MRLTGNRLVRPGEEDNAAISEVGT---IRYMAPEVLEGAVNLRDXESALKQV 216
Query: 698 DVFSFGVVALEIISGRASSDKSLDMEKIYLLEWAWNLHENNQSFGLVD--------PTLT 749
D+++ G++ EI + + Y + + + + + P
Sbjct: 217 DMYALGLIYWEIFMRCTDLFPGESVPE-YQMAFQTEVGNHPTFEDMQVLVSREKQRPKFP 275
Query: 750 E--FNDKEALRVIG-VALLCTQTSPMMRPPMSRVVAMLA 785
E + A+R + C R +A
Sbjct: 276 EAWKENSLAVRSLKETIEDCWDQDAEARLTAQXAEERMA 314
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 58.7 bits (142), Expect = 3e-09
Identities = 38/166 (22%), Positives = 58/166 (34%), Gaps = 15/166 (9%)
Query: 185 RNMQTLWASDNPFTGKIPDFI-GNWTKLKSLRFQGNSFQGPIPSSLSKLASLESLQMSDI 243
L S N + ++ T L SL N + + +L L +S
Sbjct: 39 SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS-- 96
Query: 244 YNVSSSLD---FVMSLKNLTDLSLRNALITGTIPFGI-GELQMLQILDLSFNNLTGQIPA 299
N +LD F L+ L L L N I + ++ LQ L LS N ++ + P
Sbjct: 97 SNHLHTLDEFLF-SDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQIS-RFPV 153
Query: 300 TLF----NIDSLEYLFLGNNSLSGTLPDQKSENLQKIDLSHNHLSG 341
L + L L L +N L LP + L + +L
Sbjct: 154 ELIKDGNKLPKLMLLDLSSNKLK-KLPLTDLQKLPAWVKNGLYLHN 198
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 49.5 bits (118), Expect = 3e-06
Identities = 30/157 (19%), Positives = 52/157 (33%), Gaps = 14/157 (8%)
Query: 91 LTVLKIDQNFFTGPLPSFI-GNLSRLMFLSFSHNDFSGPVPRELGNLKELTVLAFGTNNF 149
+L + N + + L+ L L SHN + + L L +N+
Sbjct: 41 TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHL 100
Query: 150 SGALPPE-LGNLAKLEQLYIDSCGAGGEI----PSTFAKLRNMQTLWASDNPFTGKIPDF 204
L +L LE L + + I + F + +Q L+ S N + +
Sbjct: 101 H-TLDEFLFSDLQALEVLLLYNN----HIVVVDRNAFEDMAQLQKLYLSQNQISRFPVEL 155
Query: 205 IGNWTKLKSLRF---QGNSFQGPIPSSLSKLASLESL 238
I + KL L N + + L KL +
Sbjct: 156 IKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKN 192
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
Score = 57.7 bits (140), Expect = 9e-09
Identities = 61/332 (18%), Positives = 108/332 (32%), Gaps = 59/332 (17%)
Query: 64 TCHITKLRVYG--LNKKGV--IPEELVTLQYLTVLKIDQNFFTGP-----LPSFIGNLSR 114
+C I KL + L G + L TL L L + N + R
Sbjct: 84 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCR 143
Query: 115 LMFLSFSHNDFSGPVPRELG----NLKELTVLAFGTNNFSG----ALPPELG-NLAKLEQ 165
L L + S L + L N+ + L L + +LE
Sbjct: 144 LEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEA 203
Query: 166 LYIDSCGAGGE----IPSTFAKLRNMQTLWASDNPFTGK-----IPDFIGNWTKLKSLRF 216
L ++SCG + + A +++ L N P + ++L++L
Sbjct: 204 LKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWI 263
Query: 217 QGNSFQGP----IPSSLSKLASLESLQMSD-------IYNVSSSLDFVMSLKNLTDLSLR 265
+ L SL+ L ++ + +L L L ++
Sbjct: 264 WECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEP--GCQLESLWVK 321
Query: 266 NALITGT----IPFGIGELQMLQILDLSFNNLTG----QIPATLFNIDS-LEYLFLGNN- 315
+ T + + + L L +S N L ++ L S L L+L +
Sbjct: 322 SCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCD 381
Query: 316 -------SLSGTLPDQKSENLQKIDLSHNHLS 340
SL+ TL + +L+++DLS+N L
Sbjct: 382 VSDSSCSSLAATL--LANHSLRELDLSNNCLG 411
|
| >3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens} Length = 310 | Back alignment and structure |
|---|
Score = 56.6 bits (137), Expect = 1e-08
Identities = 30/144 (20%), Positives = 44/144 (30%), Gaps = 23/144 (15%)
Query: 646 FGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVV 705
FG A L K + + + ++APE EK DVFSFG+V
Sbjct: 152 FGLARLMVDEKTQPEGLRSLKKPDRKKRYTVVGNPYWMAPEMINGRSYDEKVDVFSFGIV 211
Query: 706 ALEIISGRASSDKSLDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEA-----LRVI 760
EII + + FGL + F D+
Sbjct: 212 LCEIIGRVNADP---------------DYLPRTMDFGLN---VRGFLDRYCPPNCPPSFF 253
Query: 761 GVALLCTQTSPMMRPPMSRVVAML 784
+ + C P RP ++ L
Sbjct: 254 PITVRCCDLDPEKRPSFVKLEHWL 277
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 53.9 bits (130), Expect = 3e-08
Identities = 33/134 (24%), Positives = 56/134 (41%), Gaps = 14/134 (10%)
Query: 212 KSLRFQGNSFQGPIPSSLSKLASLESLQMSDIYNVSSSLD---FVMSLKNLTDLSLRNAL 268
+R + N+ + P + S L + +S N S L F L++L L L
Sbjct: 35 TEIRLEQNTIKVIPPGAFSPYKKLRRIDLS--NNQISELAPDAF-QGLRSLNSLVLYGNK 91
Query: 269 ITGTIPFGI-GELQMLQILDLSFNNLTGQIPATLF-NIDSLEYLFLGNNSLSGTLPD--- 323
IT +P + L LQ+L L+ N + + F ++ +L L L +N L T+
Sbjct: 92 IT-ELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQ-TIAKGTF 148
Query: 324 QKSENLQKIDLSHN 337
+Q + L+ N
Sbjct: 149 SPLRAIQTMHLAQN 162
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 50.4 bits (121), Expect = 6e-07
Identities = 30/136 (22%), Positives = 47/136 (34%), Gaps = 12/136 (8%)
Query: 186 NMQTLWASDNPFTGKIPD--FIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLESLQMSDI 243
+ + N IP F + KL+ + N P + L SL SL +
Sbjct: 33 TITEIRLEQNTIK-VIPPGAFSP-YKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLY-- 88
Query: 244 YNVSSSLD---FVMSLKNLTDLSLRNALITGTIPFGI-GELQMLQILDLSFNNLTGQIPA 299
N + L F L +L L L I + +L L +L L N L
Sbjct: 89 GNKITELPKSLFE-GLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQTIAKG 146
Query: 300 TLFNIDSLEYLFLGNN 315
T + +++ + L N
Sbjct: 147 TFSPLRAIQTMHLAQN 162
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 46.2 bits (110), Expect = 1e-05
Identities = 15/61 (24%), Positives = 23/61 (37%), Gaps = 6/61 (9%)
Query: 284 QILDLSFNNLTGQIPATLF-NIDSLEYLFLGNNSLSGTLPD---QKSENLQKIDLSHNHL 339
+ L N + IP F L + L NN +S L Q +L + L N +
Sbjct: 35 TEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKI 92
Query: 340 S 340
+
Sbjct: 93 T 93
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 45.0 bits (107), Expect = 3e-05
Identities = 28/136 (20%), Positives = 47/136 (34%), Gaps = 12/136 (8%)
Query: 92 TVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKELTVLAFGTNNFSG 151
T ++++QN P +L + S+N S P L+ L L N +
Sbjct: 35 TEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT- 93
Query: 152 ALPPEL-GNLAKLEQLYIDS----CGAGGEIPS-TFAKLRNMQTLWASDNPFTGKIPDFI 205
LP L L L+ L +++ C + F L N+ L DN
Sbjct: 94 ELPKSLFEGLFSLQLLLLNANKINC-----LRVDAFQDLHNLNLLSLYDNKLQTIAKGTF 148
Query: 206 GNWTKLKSLRFQGNSF 221
++++ N F
Sbjct: 149 SPLRAIQTMHLAQNPF 164
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 45.0 bits (107), Expect = 3e-05
Identities = 24/95 (25%), Positives = 43/95 (45%), Gaps = 12/95 (12%)
Query: 258 NLTDLSLRNALITGTIPFGI-GELQMLQILDLSFNNLTGQIPATLFN-IDSLEYLFLGNN 315
+T++ L I IP G + L+ +DLS N ++ ++ F + SL L L N
Sbjct: 33 TITEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGN 90
Query: 316 SLSGTLPD---QKSENLQKIDLSHNHLS----GTF 343
++ LP + +LQ + L+ N ++ F
Sbjct: 91 KIT-ELPKSLFEGLFSLQLLLLNANKINCLRVDAF 124
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 54.9 bits (131), Expect = 1e-07
Identities = 86/613 (14%), Positives = 170/613 (27%), Gaps = 228/613 (37%)
Query: 275 FGIGELQ-----MLQIL------DLSFNNLTGQIPATLFNIDSLEYLFLGNNSLSGT--- 320
F GE Q +L + + ++ +P ++ + + ++++ + +++SGT
Sbjct: 9 FETGEHQYQYKDILSVFEDAFVDNFDCKDVQ-DMPKSILSKEEIDHIIMSKDAVSGTLRL 67
Query: 321 ---LPDQKSENLQKIDLSHNHLSGTFPLWVNSELQMNLAVNNFKFDISNISVF---PGLN 374
L ++ E +QK +V L+ N+KF +S I P +
Sbjct: 68 FWTLLSKQEEMVQK--------------FVEEVLR-----INYKFLMSPIKTEQRQPSMM 108
Query: 375 CL----QRNFTCNRNAPQCKLP------------SLCCLHPEMRADNIVYEGDN----SY 414
QR+ N N K +L L P N++ +G ++
Sbjct: 109 TRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPA---KNVLIDGVLGSGKTW 165
Query: 415 LGASAFVVTNTEK----------WAVSKVG-------LFNGRENASYVLNTQDQVTGTRT 457
+ V + K W + + + Y ++ +
Sbjct: 166 VALD---VCLSYKVQCKMDFKIFWL--NLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHS 220
Query: 458 PKLYQTSRISAGSLRYYGLGLVNGPYNVSLLFAETNFPDPSTERWESRGRRVFDIYVQGT 517
+ LR L + PY LL ++ F++ +
Sbjct: 221 SNIKLRIHSIQAELRRL---LKSKPYENCLLVL-----L---NVQNAKAWNAFNLSCK-I 268
Query: 518 L---RWKD-FDISKEAGGPNRAIIKNFSATVSENHLEIHLFWAGKGTCCIPKQ---GNYG 570
L R+K D A + ++ + + + L + +P++ N
Sbjct: 269 LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTN-- 326
Query: 571 PAISALSVVSAF-----------------------KPSVSGLPPSTPGNKNHTGLIV--- 604
P LS+++ + S++ L P+ K L V
Sbjct: 327 PR--RLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEY-RKMFDRLSVFPP 383
Query: 605 GIAVPLGILGLIVISIMFYLWREKDNDDEEV---------LVGIGSKPNIFG----YAEL 651
+P +L L +W + D V LV K + Y EL
Sbjct: 384 SAHIPTILLSL--------IWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLEL 435
Query: 652 RS-------------------ATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGH 692
+ T D + Y Y ++ + H
Sbjct: 436 KVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQY---------FYSHIG--H----H 480
Query: 693 L--TEKADVFSFGVVALEIISGRASSDKSLDMEKIYL-LEW----------AWNLHENNQ 739
L E + + ++L + AWN
Sbjct: 481 LKNIEHPERMTL-------------------FRMVFLDFRFLEQKIRHDSTAWN------ 515
Query: 740 SFGLVDPTLTEFN 752
+ G + TL +
Sbjct: 516 ASGSILNTLQQLK 528
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 43.3 bits (101), Expect = 3e-04
Identities = 85/582 (14%), Positives = 161/582 (27%), Gaps = 188/582 (32%)
Query: 4 KHAVRALNSILQQW-DAPAVPLWNISGNPCSG-SALNAT---DSEFESPNNNPAIVCNCT 58
L L + A V + + G SG + + + + C
Sbjct: 134 LQPYLKLRQALLELRPAKNVLIDGVLG---SGKTWVALDVCLSYKVQ-----------CK 179
Query: 59 FDNGATCHITKLRVYGLN-KKGVIPEELVTLQYLTVLKIDQNF-------FTGPLP--SF 108
D ++ LN K PE ++ + + +ID N+ L S
Sbjct: 180 MDFK---------IFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSI 230
Query: 109 IGNLSRLMFLSFSHNDFSGPVPREL---GNLKELTVL-AFG--------TNNFSGALPPE 156
L RL+ P L N++ AF T +
Sbjct: 231 QAELRRLLKSK--------PYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVT---D 279
Query: 157 LGNLAKLEQLYIDSCGAG---GEIPSTFAKLRNMQTLWASD--------NPFT-----GK 200
+ A + +D E+ S K + + D NP
Sbjct: 280 FLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCR---PQDLPREVLTTNPRRLSIIAES 336
Query: 201 IPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLESLQMSDIYNVSSSLDFVMSLKNLT 260
I D + W K + I SSL+ L E +++ + +
Sbjct: 337 IRDGLATWDNWK--HVNCDKLTTIIESSLNVLEPAE---YRKMFD-----RLSVFPPSA- 385
Query: 261 DLSLRNALITGTIPFGIGELQMLQIL--DLSFNNLTGQIPATLFNIDSLEYLFLGNNSLS 318
IP +L ++ D+ ++ + L SL + +
Sbjct: 386 -----------HIP-----TILLSLIWFDVIKSD-VMVVVNKLHK-YSL--VEKQPKEST 425
Query: 319 GTLPDQKSENLQKIDLS---HNHLSGTFPLWVNSELQMNLAVNNFKFDISNISVFPGLNC 375
++P E K++ H + V+++
Sbjct: 426 ISIPSIYLELKVKLENEYALHRSI-----------------VDHYN-------------- 454
Query: 376 LQRNFTCNRNAPQCKLPSLCCLHPEMRADNIVYEGDNSYLGASAFVVTNTEKWAVSKVGL 435
+ + F + P D Y S++G + + E+ + ++
Sbjct: 455 IPKTFDSDDLIPPY-------------LDQYFY----SHIGHHLKNIEHPERMTLFRMVF 497
Query: 436 FNGR------ENASYVLNTQDQVTGTRTPKLYQTSRISAGSLRYYGLGLV-NGPYNVSLL 488
+ R + S N +G+ L Q L++Y + N P L+
Sbjct: 498 LDFRFLEQKIRHDSTAWNA----SGSILNTLQQ--------LKFYKPYICDNDPKYERLV 545
Query: 489 FAETNF-PDPSTERWESRGRRVFDIYVQGTLRWKDFDISKEA 529
A +F P S+ + ++ L +D I +EA
Sbjct: 546 NAILDFLPKIEENLICSKYTDL----LRIALMAEDEAIFEEA 583
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386 | Back alignment and structure |
|---|
Score = 53.9 bits (130), Expect = 1e-07
Identities = 48/288 (16%), Positives = 84/288 (29%), Gaps = 57/288 (19%)
Query: 109 IGNLSRLMFLSFSHNDFSG----PVPRELGNLKELTVLAFGTNNFSG----ALPPELGNL 160
+ S + S + + V L + + N L + +
Sbjct: 1 MARFS-IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASK 59
Query: 161 AKLEQLYIDSCGAG---GEIPSTFAKL-------RNMQTLWASDNPFTGK----IPDFIG 206
LE G EIP L + T+ SDN F + DF+
Sbjct: 60 KDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLS 119
Query: 207 NWTKLKSLRFQGNSF-------------QGPIPSSLSKLASLESLQMSD--IYNVSSSL- 250
T L+ L N + + L S+ + N S
Sbjct: 120 KHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEW 179
Query: 251 -DFVMSLKNLTDLSLR-NAL----ITGTIPFGIGELQMLQILDLSFNNLTGQ----IPAT 300
S + L + + N + I + G+ Q L++LDL N T +
Sbjct: 180 AKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIA 239
Query: 301 LFNIDSLEYLFLGNN--------SLSGTLPDQKSENLQKIDLSHNHLS 340
L + +L L L + ++ ++ LQ + L +N +
Sbjct: 240 LKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIE 287
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386 | Back alignment and structure |
|---|
Score = 47.4 bits (113), Expect = 1e-05
Identities = 43/312 (13%), Positives = 93/312 (29%), Gaps = 63/312 (20%)
Query: 91 LTVLKIDQNFFTG----PLPSFIGNLSRLMFLSFSHNDFSGP----VPRELGNLKELTVL 142
+ + + T + + + + + S N + + + K+L +
Sbjct: 6 IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 65
Query: 143 AFGTNNFSGALPPE-----------LGNLAKLEQLYIDSCGAGGEIPSTFAKL----RNM 187
F + F+G + E L KL + + G +
Sbjct: 66 EFS-DIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPL 124
Query: 188 QTLWASDNPFT-------------GKIPDFIGNWTKLKSLRFQGNSFQGP----IPSSLS 230
+ L+ +N + N L+S+ N + +
Sbjct: 125 EHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQ 184
Query: 231 KLASLESLQMS--DIYNVSSSLDFVMSLK---NLTDLSLRNALIT--GTIPFG--IGELQ 281
L +++M I + L L L L++ T G+ +
Sbjct: 185 SHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWP 244
Query: 282 MLQILDLSFNNLTGQ----IPATLFNID--SLEYLFLGNNSLS-------GTLPDQKSEN 328
L+ L L+ L+ + + ++ L+ L L N + T+ D+K +
Sbjct: 245 NLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPD 304
Query: 329 LQKIDLSHNHLS 340
L ++L+ N S
Sbjct: 305 LLFLELNGNRFS 316
|
| >2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens} Length = 307 | Back alignment and structure |
|---|
Score = 53.1 bits (128), Expect = 1e-07
Identities = 34/167 (20%), Positives = 56/167 (33%), Gaps = 37/167 (22%)
Query: 679 SYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRA-SSDKSLDMEKIYLLEWAWNLHEN 737
S ++APE + +EK DVFS+G++ E+I+ R + +I W +H
Sbjct: 166 SAAWMAPEVFEGSNYSEKCDVFSWGIILWEVITRRKPFDEIGGPAFRI-----MWAVHNG 220
Query: 738 NQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLAGDIEVGTVVSKP 797
+ P L + K ++ C P RP M +V ++
Sbjct: 221 TR------PPLIKNLPKPIESLM---TRCWSKDPSQRPSMEEIVKIM------------- 258
Query: 798 SYLTGWDFKDITASFLNEDTPTPSSSNKRSNSKKKSQRENPVDDHSE 844
+ F D P S + R P D +E
Sbjct: 259 --------THLMRYFPGADEPLQYPCQH-SLPPGEDGRVEPYVDFAE 296
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 52.8 bits (126), Expect = 2e-07
Identities = 36/176 (20%), Positives = 61/176 (34%), Gaps = 21/176 (11%)
Query: 245 NVSSSLDFVMSLKNLTDLSLRNALITGTIPFG-IGELQMLQILDLSFNNLTGQIPATLF- 302
SL + +NLT+L + N + + L L+ L + + L + F
Sbjct: 19 GALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFH 77
Query: 303 NIDSLEYLFLGNNSLSGTLPDQ--KSENLQKIDLSHNHLS-GTFPLWVNSELQMNLAVNN 359
L L L N+L +L + + +LQ++ LS N L W+ + L
Sbjct: 78 FTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLHCSCALRWLQRWEEEGLGGVP 136
Query: 360 FKFDISNISVFPGLNCLQRNFTCNRNAPQCKLPSLCCLHPEMRADNIVYEGDNSYL 415
+ L C + + C +P+L P V GD+ L
Sbjct: 137 EQ----------KLQCHGQGPLAHMPNASCGVPTLKVQVPNAS----VDVGDDVLL 178
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 45.5 bits (107), Expect = 5e-05
Identities = 19/99 (19%), Positives = 25/99 (25%), Gaps = 10/99 (10%)
Query: 129 VPRELGNLKELTVLAFGTNNFSGALPPE-LGNLAKLEQLYIDSCGAGGEI----PSTFAK 183
L + LT L L L L +L L I + P F
Sbjct: 23 SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS----GLRFVAPDAFHF 78
Query: 184 LRNMQTLWASDNPFTGKIPDFIGNWTKLKSLRFQGNSFQ 222
+ L S N + L+ L GN
Sbjct: 79 TPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLH 116
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362 | Back alignment and structure |
|---|
Score = 51.1 bits (121), Expect = 9e-07
Identities = 32/165 (19%), Positives = 58/165 (35%), Gaps = 32/165 (19%)
Query: 209 TKLKSLRFQGNSFQGPIPSSL--SKLASLESLQM---SDIYNVSSSLDFV------MSLK 257
LKSL + + S L +LE L + + Y ++
Sbjct: 193 PNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFP 252
Query: 258 NLTDLSLRNALITGTIPFGIGE---LQMLQILDLSFNNLTGQIPATLFNIDSLEYLFLGN 314
NL L + +A + E L L+ +D+S LT + G
Sbjct: 253 NLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDE----------------GA 296
Query: 315 NSLSGTLPDQKSENLQKIDLSHNHLSGTFPLWVNSELQMNLAVNN 359
L + K ++L+ I++ +N+LS + L M + V++
Sbjct: 297 RLLLDHVD--KIKHLKFINMKYNYLSDEMKKELQKSLPMKIDVSD 339
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168 | Back alignment and structure |
|---|
Score = 48.6 bits (116), Expect = 1e-06
Identities = 26/110 (23%), Positives = 50/110 (45%), Gaps = 6/110 (5%)
Query: 232 LASLESLQMSDIYNVSSSLD-FVMSLKNLTDLSLRNALITGTIPFGIGELQMLQILDLSF 290
A++ L + + + ++ NL LSL N + ++ + +L L+ L+LS
Sbjct: 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SVS-NLPKLPKLKKLELSE 80
Query: 291 NNLTGQIPATLFNIDSLEYLFLGNN---SLSGTLPDQKSENLQKIDLSHN 337
N + G + + +L +L L N +S P +K E L+ +DL +
Sbjct: 81 NRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC 130
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168 | Back alignment and structure |
|---|
Score = 40.9 bits (96), Expect = 5e-04
Identities = 29/127 (22%), Positives = 44/127 (34%), Gaps = 29/127 (22%)
Query: 255 SLKNLTDLSLRNALIT-GTIPFGIGELQMLQILDLSFNNLTGQIPATLFNIDSLEYLFLG 313
+ + +L L N G I E L+ L L L ++ +L L
Sbjct: 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI--------SVSNLPKL--- 70
Query: 314 NNSLSGTLPDQKSENLQKIDLSHNHLSGTFPLWVNS--ELQM-NLAVNNFKFDISNISVF 370
L+K++LS N + G + L NL+ N K DIS +
Sbjct: 71 -------------PKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLK-DISTLEPL 116
Query: 371 PGLNCLQ 377
L CL+
Sbjct: 117 KKLECLK 123
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220 | Back alignment and structure |
|---|
Score = 49.7 bits (119), Expect = 1e-06
Identities = 28/135 (20%), Positives = 51/135 (37%), Gaps = 9/135 (6%)
Query: 186 NMQTLWASDNPFTGKIPDFI-GNWTKLKSLRFQGNSFQGPIPSSLSKLASLESLQMSDIY 244
L ++N FT I +L+ + F N + + + + ++
Sbjct: 33 YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLT--S 90
Query: 245 NVSSSLDFVM--SLKNLTDLSLRNALITGTIPFGI-GELQMLQILDLSFNNLTGQIPATL 301
N ++ M L++L L LR+ IT + L +++L L N +T +
Sbjct: 91 NRLENVQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYDNQIT-TVAPGA 148
Query: 302 F-NIDSLEYLFLGNN 315
F + SL L L N
Sbjct: 149 FDTLHSLSTLNLLAN 163
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220 | Back alignment and structure |
|---|
Score = 43.9 bits (104), Expect = 8e-05
Identities = 21/95 (22%), Positives = 38/95 (40%), Gaps = 11/95 (11%)
Query: 258 NLTDLSLRNALITGTIPFGI-GELQMLQILDLSFNNLTGQIPATLFN-IDSLEYLFLGNN 315
+L L N T GI +L L+ ++ S N +T I F + + L +N
Sbjct: 33 YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGASGVNEILLTSN 91
Query: 316 SLSGTLPD---QKSENLQKIDLSHNHLS----GTF 343
L + + E+L+ + L N ++ +F
Sbjct: 92 RLE-NVQHKMFKGLESLKTLMLRSNRITCVGNDSF 125
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176 | Back alignment and structure |
|---|
Score = 48.5 bits (116), Expect = 1e-06
Identities = 21/91 (23%), Positives = 33/91 (36%), Gaps = 11/91 (12%)
Query: 255 SLKNLTDLSLRNALITGTIPFGIGELQMLQILDLSFNNLTGQIPATLFNIDS---LEYLF 311
+ +L LR I I L +D S N + L L+ L
Sbjct: 17 NAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR-----KLDGFPLLRRLKTLL 70
Query: 312 LGNNSLS--GTLPDQKSENLQKIDLSHNHLS 340
+ NN + G DQ +L ++ L++N L
Sbjct: 71 VNNNRICRIGEGLDQALPDLTELILTNNSLV 101
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176 | Back alignment and structure |
|---|
Score = 46.2 bits (110), Expect = 9e-06
Identities = 17/115 (14%), Positives = 36/115 (31%), Gaps = 8/115 (6%)
Query: 227 SSLSKLASLESLQMSDIYNVSSSLD-FVMSLKNLTDLSLRNALITGTIPFGIGELQMLQI 285
+ + L + ++ +L + + I + G L+ L+
Sbjct: 13 AQYTNAVRDRELDLR--GYKIPVIENLGATLDQFDAIDFSDNEIR-KLD-GFPLLRRLKT 68
Query: 286 LDLSFNNLTGQIPATLFNIDSLEYLFLGNN---SLSGTLPDQKSENLQKIDLSHN 337
L ++ N + + L L L NN L P ++L + + N
Sbjct: 69 LLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRN 123
|
| >2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens} Length = 319 | Back alignment and structure |
|---|
Score = 50.0 bits (120), Expect = 2e-06
Identities = 25/152 (16%), Positives = 49/152 (32%), Gaps = 40/152 (26%)
Query: 646 FGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPE---------YAMRGHLTEK 696
FG + + R +KL ++ +LAPE + ++
Sbjct: 173 FGLFSISGVLQAGRREDKL---------RIQNGWLCHLAPEIIRQLSPDTEEDKLPFSKH 223
Query: 697 ADVFSFGVVALEIISGRASSDKSLDMEKIYLLEWAWNLHENNQSFGLVD----PTLTEFN 752
+DVF+ G + E+ + EW + + P L++
Sbjct: 224 SDVFALGTIWYELHAR----------------EWPFKTQPAEAIIWQMGTGMKPNLSQIG 267
Query: 753 DKEALRVIGVALLCTQTSPMMRPPMSRVVAML 784
+ + I L C RP ++++ ML
Sbjct: 268 MGKEISDI--LLFCWAFEQEERPTFTKLMDML 297
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149 | Back alignment and structure |
|---|
Score = 47.4 bits (113), Expect = 2e-06
Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 5/86 (5%)
Query: 255 SLKNLTDLSLRNALITGTIPFGIGELQMLQILDLSFNNLTGQIPATLFNIDSLEYLFLGN 314
+ L LS N +T +I + +L L+ L+LS N ++G + +L +L L
Sbjct: 40 EFEELEFLSTINVGLT-SIA-NLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSG 97
Query: 315 N---SLSGTLPDQKSENLQKIDLSHN 337
N LS P +K ENL+ +DL +
Sbjct: 98 NKIKDLSTIEPLKKLENLKSLDLFNC 123
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149 | Back alignment and structure |
|---|
Score = 43.9 bits (104), Expect = 3e-05
Identities = 29/127 (22%), Positives = 47/127 (37%), Gaps = 29/127 (22%)
Query: 255 SLKNLTDLSLRNALIT-GTIPFGIGELQMLQILDLSFNNLTGQIPATLFNIDSLEYLFLG 313
+ ++ +L L N+ G + E + L+ L LT +I +L L
Sbjct: 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT--------SIANLPKL--- 63
Query: 314 NNSLSGTLPDQKSENLQKIDLSHNHLSGTFPLWVNS--ELQM-NLAVNNFKFDISNISVF 370
L+K++LS N +SG + L NL+ N K D+S I
Sbjct: 64 -------------NKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIK-DLSTIEPL 109
Query: 371 PGLNCLQ 377
L L+
Sbjct: 110 KKLENLK 116
|
| >3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A* Length = 309 | Back alignment and structure |
|---|
Score = 47.7 bits (114), Expect = 7e-06
Identities = 18/106 (16%), Positives = 40/106 (37%), Gaps = 14/106 (13%)
Query: 679 SYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSLDMEKIYLLEWAWNLHENN 738
+ ++APE EK+DV+SFGV+ E+ + + ++ + +
Sbjct: 202 TPEWMAPEVLRDEPSNEKSDVYSFGVILWELATLQQPWG---NLN---PAQVVAAVGFKC 255
Query: 739 QSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAML 784
+ + + + +I C P RP + ++ +L
Sbjct: 256 KR-----LEIPRNLNPQVAAII---EGCWTNEPWKRPSFATIMDLL 293
|
| >3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} Length = 271 | Back alignment and structure |
|---|
Score = 46.5 bits (111), Expect = 1e-05
Identities = 19/106 (17%), Positives = 44/106 (41%), Gaps = 14/106 (13%)
Query: 679 SYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSLDMEKIYLLEWAWNLHENN 738
+Y ++APE ++ +DV+S+GV+ E+++G ++ L A+ + N
Sbjct: 177 AYAWMAPEVIRASMFSKGSDVWSYGVLLWELLTGEVPFR---GID---GLAVAYGVAMNK 230
Query: 739 QSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAML 784
+ + + +++ C P RP + ++ L
Sbjct: 231 LA-----LPIPSTCPEPFAKLM---EDCWNPDPHSRPSFTNILDQL 268
|
| >3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} PDB: 3c4c_A* 3c4d_A* 3idp_A* 3ii5_A* 3d4q_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 2fb8_A* 4dbn_A* 1uwj_A* 1uwh_A* 3q96_A* Length = 289 | Back alignment and structure |
|---|
Score = 46.9 bits (112), Expect = 1e-05
Identities = 22/131 (16%), Positives = 51/131 (38%), Gaps = 13/131 (9%)
Query: 657 DFNRSNKLGEGGYGPVYKVTANSYGYLAPE---YAMRGHLTEKADVFSFGVVALEIISGR 713
DF + + ++ + S ++APE + ++DV++FG+V E+++G+
Sbjct: 163 DFGLATEKSRWSGSHQFEQLSGSILWMAPEVIRMQDSNPYSFQSDVYAFGIVLYELMTGQ 222
Query: 714 ASSDKSLDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMM 773
+ ++I + + S + K R++ C +
Sbjct: 223 LPYSNINNRDQII-----EMVGRGSLS--PDLSKVRSNCPKRMKRLM---AECLKKKRDE 272
Query: 774 RPPMSRVVAML 784
RP R++A +
Sbjct: 273 RPSFPRILAEI 283
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251 | Back alignment and structure |
|---|
Score = 45.5 bits (108), Expect = 3e-05
Identities = 40/160 (25%), Positives = 59/160 (36%), Gaps = 16/160 (10%)
Query: 164 EQLYIDSCGAGGEIPSTFAKLRNMQTLWASDNPFTGKIPDFIGNW-TKLKSLRFQGNSFQ 222
E+L + S G +TF L + L N + + + T+L +L N
Sbjct: 38 EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTLGLANNQLA 96
Query: 223 GPIPSSLSKLASLESLQMSDIYNVSSSL-----DFVMSLKNLTDLSLRNALITGTIPFGI 277
L L+ L + N SL D L L +L L + +IP G
Sbjct: 97 SLPLGVFDHLTQLDKLYLG--GNQLKSLPSGVFD---RLTKLKELRLNTNQLQ-SIPAGA 150
Query: 278 -GELQMLQILDLSFNNLTGQIPATLF-NIDSLEYLFLGNN 315
+L LQ L LS N L +P F + L+ + L N
Sbjct: 151 FDKLTNLQTLSLSTNQLQS-VPHGAFDRLGKLQTITLFGN 189
|
| >4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A* Length = 287 | Back alignment and structure |
|---|
Score = 45.8 bits (109), Expect = 3e-05
Identities = 28/108 (25%), Positives = 42/108 (38%), Gaps = 14/108 (12%)
Query: 679 SYGYLAPE--YAMRGHLTEKADVFSFGVVALEIISGRASSDKSLDMEKIYLLEWAWNLHE 736
++ ++APE A TEKAD +SF ++ I++G D + + E
Sbjct: 189 NFQWMAPETIGAEEESYTEKADTYSFAMILYTILTGEGPFD---EYSYGKIKFINMIREE 245
Query: 737 NNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAML 784
+ PT+ E VI LC P RP S +V L
Sbjct: 246 GLR------PTIPEDCPPRLRNVI---ELCWSGDPKKRPHFSYIVKEL 284
|
| >3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} PDB: 3kmw_A* 3rep_A* Length = 271 | Back alignment and structure |
|---|
Score = 45.3 bits (108), Expect = 4e-05
Identities = 21/134 (15%), Positives = 48/134 (35%), Gaps = 21/134 (15%)
Query: 657 DFNRSNKLGEGGYGPVYKVTAN--SYGYLAPEYAMRG----HLTEKADVFSFGVVALEII 710
D + + ++ ++ + ++APE A++ AD++SF V+ E++
Sbjct: 147 DEDMTARISMADVKFSFQSPGRMYAPAWVAPE-ALQKKPEDTNRRSADMWSFAVLLWELV 205
Query: 711 SGRASSDKSLDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTS 770
+ D+ +E + PT+ +++ +C
Sbjct: 206 TREVPFA---DLS---NMEIGMKVALEGLR-----PTIPPGISPHVSKLM---KICMNED 251
Query: 771 PMMRPPMSRVVAML 784
P RP +V +L
Sbjct: 252 PAKRPKFDMIVPIL 265
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229 | Back alignment and structure |
|---|
Score = 44.3 bits (105), Expect = 6e-05
Identities = 37/135 (27%), Positives = 48/135 (35%), Gaps = 15/135 (11%)
Query: 188 QTLWASDNPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLESLQMSDIYNVS 247
Q L+ DN T P + LK L N L L L + N
Sbjct: 43 QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLG--TNQL 100
Query: 248 SSL-----DFVMSLKNLTDLSL-RNALITGTIPFGIGELQMLQILDLSFNNLTGQIPATL 301
+ L D L +L +L + N L +P GI L L L L N L IP
Sbjct: 101 TVLPSAVFD---RLVHLKELFMCCNKL--TELPRGIERLTHLTHLALDQNQLK-SIPHGA 154
Query: 302 F-NIDSLEYLFLGNN 315
F + SL + +L N
Sbjct: 155 FDRLSSLTHAYLFGN 169
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594 | Back alignment and structure |
|---|
Score = 45.3 bits (107), Expect = 7e-05
Identities = 33/255 (12%), Positives = 72/255 (28%), Gaps = 27/255 (10%)
Query: 105 LPSFIGNLSRLMFLSFSHNDFS----GPVPRELGNLKELTVLAFGTNNFSGALPPELG-N 159
+ + + + L + + + + N K L + FS +
Sbjct: 97 IEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLS--SCEGFSTDGLAAIAAT 154
Query: 160 LAKLEQLYIDSCGAGGEIPSTFAKLRNMQTLWASDN--PFTGKIPD-----FIGNWTKLK 212
L++L + + + T S N ++ + LK
Sbjct: 155 CRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLK 214
Query: 213 SLRFQGNSFQGPIPSSLSKLASLESLQMSDIYNVSSSLDFVM------SLKNLTDLSLRN 266
SL+ + + L + LE L + K L LS
Sbjct: 215 SLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFW 274
Query: 267 ALITGTIPFGIGELQMLQILDLSFNNLTGQ-IPATLFNIDSLEYLFL----GNNSLSGTL 321
+ +P L L+LS+ + + L L+ L++ + L
Sbjct: 275 DAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLA 334
Query: 322 PDQKSENLQKIDLSH 336
++L+++ +
Sbjct: 335 --STCKDLRELRVFP 347
|
| >3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A* Length = 301 | Back alignment and structure |
|---|
Score = 44.7 bits (106), Expect = 7e-05
Identities = 26/157 (16%), Positives = 52/157 (33%), Gaps = 34/157 (21%)
Query: 646 FGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPE------YAMRGHLTEKADV 699
G A + S + + G + Y+APE ++ D+
Sbjct: 157 LGLAVMHSQSTNQLDVGNNPRVG----------TKRYMAPEVLDETIQVDCFDSYKRVDI 206
Query: 700 FSFGVVALEIISGRASSDKSLDMEKIYLLEWAWNLHENNQSFGLVD---------PTL-T 749
++FG+V E+ S+ D + + +++ N+ SF + P +
Sbjct: 207 WAFGLVLWEVARRMVSNGIVEDYKPPF-----YDVVPNDPSFEDMRKVVCVDQQRPNIPN 261
Query: 750 EFNDKEALRVIGVALL--CTQTSPMMRPPMSRVVAML 784
+ L + L+ C +P R R+ L
Sbjct: 262 RWFSDPTLTSLA-KLMKECWYQNPSARLTALRIKKTL 297
|
| >3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} Length = 337 | Back alignment and structure |
|---|
Score = 44.0 bits (104), Expect = 1e-04
Identities = 23/119 (19%), Positives = 40/119 (33%), Gaps = 14/119 (11%)
Query: 680 YGYLAPE------YAMRGHLTEKADVFSFGVVALEIISGRASSDKSLDMEKIYLLEWAWN 733
Y+ PE AD++SFG++ E+ S + + Y +
Sbjct: 210 KRYMPPEVLDESLNRNHFQSYIMADMYSFGLILWEVARRCVSGGIVEEYQLPYHDLVPSD 269
Query: 734 LHENNQSFGLVD----PTL-TEFNDKEALRVIGVALL--CTQTSPMMRPPMSRVVAMLA 785
+ + P+ ++ E LR + L+ C +P R RV LA
Sbjct: 270 PSYEDMREIVCIKKLRPSFPNRWSSDECLRQM-GKLMTECWAHNPASRLTALRVKKTLA 327
|
| >1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A* Length = 342 | Back alignment and structure |
|---|
Score = 43.2 bits (102), Expect = 2e-04
Identities = 22/119 (18%), Positives = 43/119 (36%), Gaps = 16/119 (13%)
Query: 680 YGYLAPEYAMRGHL-------TEKADVFSFGVVALEIISGRASSDKSLDMEKIYLLEWAW 732
Y+APE + + ++AD+++ G+V EI + D + Y
Sbjct: 215 KRYMAPE-VLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPS 273
Query: 733 NLHENNQSFGLVD----PTLTE-FNDKEALRVIGVALL--CTQTSPMMRPPMSRVVAML 784
+ + + P + + EALRV+ ++ C + R R+ L
Sbjct: 274 DPSVEEMRKVVCEQKLRPNIPNRWQSCEALRVM-AKIMRECWYANGAARLTALRIKKTL 331
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193 | Back alignment and structure |
|---|
Score = 41.5 bits (98), Expect = 4e-04
Identities = 30/109 (27%), Positives = 49/109 (44%), Gaps = 11/109 (10%)
Query: 212 KSLRFQGNSFQGPIPSSLSKLASLESLQMSDIYNVSSSL-DFVM-SLKNLTDLSL-RNAL 268
L GN F +P LS L + +S N S+L + ++ L L L N L
Sbjct: 34 TELYLDGNQFTL-VPKELSNYKHLTLIDLS--NNRISTLSNQSFSNMTQLLTLILSYNRL 90
Query: 269 ITGTIPFGI-GELQMLQILDLSFNNLTGQIPATLF-NIDSLEYLFLGNN 315
IP L+ L++L L N+++ +P F ++ +L +L +G N
Sbjct: 91 --RCIPPRTFDGLKSLRLLSLHGNDIS-VVPEGAFNDLSALSHLAIGAN 136
|
| >4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp} Length = 294 | Back alignment and structure |
|---|
Score = 42.2 bits (100), Expect = 5e-04
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 682 YLAPEYAMRGHLTEKADVFSFGVVALEIISGR 713
Y +PE A E D++S G+V E++ G
Sbjct: 178 YFSPEQAKGEATDECTDIYSIGIVLYEMLVGE 209
|
| >2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis} Length = 309 | Back alignment and structure |
|---|
Score = 41.9 bits (99), Expect = 6e-04
Identities = 11/35 (31%), Positives = 19/35 (54%)
Query: 679 SYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGR 713
+ Y+APE H T +AD+++ V E ++G
Sbjct: 198 TLYYMAPERFSESHATYRADIYALTCVLYECLTGS 232
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192 | Back alignment and structure |
|---|
Score = 40.8 bits (96), Expect = 7e-04
Identities = 28/119 (23%), Positives = 50/119 (42%), Gaps = 12/119 (10%)
Query: 225 IPSSLSKLASLESLQMSDIYNVSSSLDFVMSLKNLTDLSLRNALITGTIPFGI-GELQML 283
IP ++L L +++ +SS F L +L L L+ +T I +
Sbjct: 27 IPLHTTEL----LLNDNELGRISSDGLF-GRLPHLVKLELKRNQLT-GIEPNAFEGASHI 80
Query: 284 QILDLSFNNLTGQIPATLFN-IDSLEYLFLGNNSLSGTLPDQKSENLQKIDLSHNHLSG 341
Q L L N + +I +F + L+ L L +N +S + E+L L+ +L+
Sbjct: 81 QELQLGENKIK-EISNKMFLGLHQLKTLNLYDNQIS-CVMPGSFEHLNS--LTSLNLAS 135
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} Length = 681 | Back alignment and structure |
|---|
Score = 41.8 bits (98), Expect = 9e-04
Identities = 8/33 (24%), Positives = 13/33 (39%), Gaps = 1/33 (3%)
Query: 681 GYLAPEYAMRGHLTEKADVFSFGVVALEIISGR 713
G+ APE R T D+++ G +
Sbjct: 242 GFQAPEIV-RTGPTVATDIYTVGRTLAALTLDL 273
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 866 | |||
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 100.0 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 100.0 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 100.0 | |
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 100.0 | |
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 100.0 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 100.0 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 100.0 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 99.98 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 99.98 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 99.97 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 99.97 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 99.97 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 99.97 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 99.97 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 99.97 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 99.97 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 99.97 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 99.97 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 99.97 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 99.97 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 99.97 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 99.97 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 99.97 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 99.97 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 99.97 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 99.97 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 99.97 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 99.97 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 99.97 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.97 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 99.96 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 99.96 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 99.96 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 99.96 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 99.96 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 99.96 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 99.96 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 99.96 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 99.96 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 99.96 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.96 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 99.95 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 99.95 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 99.95 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 99.95 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 99.95 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 99.95 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 99.95 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 99.95 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 99.95 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.95 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 99.94 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 99.94 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 99.94 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 99.94 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 99.94 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 99.94 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.94 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 99.93 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 99.93 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 99.92 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 99.92 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 99.91 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 99.91 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 99.91 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.91 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 99.91 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.91 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 99.9 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 99.9 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 99.89 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 99.89 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 99.89 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 99.89 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 99.88 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 99.88 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 99.88 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 99.88 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 99.87 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 99.86 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 99.86 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 99.86 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 99.86 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 99.86 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 99.86 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 99.86 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 99.86 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 99.85 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 99.85 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 99.85 | |
| 3omv_A | 307 | RAF proto-oncogene serine/threonine-protein kinas; | 99.83 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 99.83 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 99.82 | |
| 4gt4_A | 308 | Tyrosine-protein kinase transmembrane receptor RO; | 99.82 | |
| 4aoj_A | 329 | High affinity nerve growth factor receptor; transf | 99.81 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 99.8 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 99.8 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 99.8 | |
| 4asz_A | 299 | BDNF/NT-3 growth factors receptor; transferase, TR | 99.8 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 99.79 | |
| 4ase_A | 353 | Vascular endothelial growth factor receptor 2; tra | 99.78 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 99.78 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 99.78 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 99.77 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 99.77 | |
| 3hmm_A | 303 | TGF-beta receptor type-1; ALK5, kinase, inhibitor, | 99.76 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 99.76 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 99.76 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 99.76 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 99.76 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 99.75 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 99.75 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 99.75 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 99.75 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 99.75 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 99.73 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 99.73 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 99.72 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 99.71 | |
| 4g3f_A | 336 | NF-kappa-beta-inducing kinase; non-RD kinase, prot | 99.7 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.69 | |
| 2qkw_B | 321 | Protein kinase; three-helix bundle motif, AVRPTO-P | 99.68 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 99.68 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 99.67 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.67 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 99.66 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 99.66 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 99.65 | |
| 3fpq_A | 290 | Serine/threonine-protein kinase WNK1; protein seri | 99.65 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 99.65 | |
| 4fih_A | 346 | Serine/threonine-protein kinase PAK 4; kinase doma | 99.65 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 99.64 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.63 | |
| 4b9d_A | 350 | Serine/threonine-protein kinase NEK1; transferase, | 99.63 | |
| 3uim_A | 326 | Brassinosteroid insensitive 1-associated receptor; | 99.63 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.62 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.61 | |
| 4fie_A | 423 | Serine/threonine-protein kinase PAK 4; kinase doma | 99.61 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.61 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 99.61 | |
| 4aw0_A | 311 | HPDK1, 3-phosphoinositide-dependent protein kinase | 99.6 | |
| 3hyh_A | 275 | Carbon catabolite-derepressing protein kinase; kin | 99.6 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 99.59 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 99.59 | |
| 3ubd_A | 304 | Ribosomal protein S6 kinase alpha-3; kinase-inhibi | 99.58 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 99.58 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 99.56 | |
| 3lb7_A | 307 | RAF proto-oncogene serine/threonine-protein kinas; | 99.53 | |
| 4g31_A | 299 | Eukaryotic translation initiation factor 2-alpha; | 99.53 | |
| 3poz_A | 327 | Epidermal growth factor receptor; kinase domain, a | 99.52 | |
| 3soc_A | 322 | Activin receptor type-2A; structural genomics cons | 99.51 | |
| 2nru_A | 307 | Interleukin-1 receptor-associated kinase 4; inhibi | 99.51 | |
| 3sv0_A | 483 | Casein kinase I-like; typical kinase domain fold, | 99.5 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 99.5 | |
| 3og7_A | 289 | AKAP9-BRAF fusion protein; proto-oncogene, V600E, | 99.49 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 99.49 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 99.49 | |
| 3p86_A | 309 | Serine/threonine-protein kinase CTR1; ETR1, ERS1, | 99.49 | |
| 3kex_A | 325 | Receptor tyrosine-protein kinase ERBB-3; kinase do | 99.48 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 99.48 | |
| 1fmk_A | 452 | C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros | 99.48 | |
| 3op5_A | 364 | Serine/threonine-protein kinase VRK1; adenosine tr | 99.48 | |
| 1csn_A | 298 | Casein kinase-1; phosphotransferase; HET: ATP; 2.0 | 99.47 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 99.47 | |
| 2psq_A | 370 | Fibroblast growth factor receptor 2; kinase domain | 99.47 | |
| 3lzb_A | 327 | Epidermal growth factor receptor; epidermal growth | 99.47 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 99.47 | |
| 4hgt_A | 296 | Casein kinase I isoform delta; CK1D, inhibitor, tr | 99.47 | |
| 3uzp_A | 296 | CKI-delta, CKID, casein kinase I isoform delta; CK | 99.46 | |
| 2izr_A | 330 | Casein kinase I isoform gamma-3; serine/threonine- | 99.46 | |
| 3vhe_A | 359 | Vascular endothelial growth factor receptor 2; kin | 99.46 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 99.46 | |
| 1luf_A | 343 | Muscle-specific tyrosine kinase receptor MUSK; pho | 99.45 | |
| 4b99_A | 398 | Mitogen-activated protein kinase 7; transferase, i | 99.45 | |
| 1qcf_A | 454 | Haematopoetic cell kinase (HCK); tyrosine kinase-i | 99.45 | |
| 3kul_A | 325 | Ephrin type-A receptor 8; ATP-binding, kinase, nuc | 99.44 | |
| 3q4u_A | 301 | Activin receptor type-1; structural genomics conso | 99.44 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 99.44 | |
| 3tt0_A | 382 | Basic fibroblast growth factor receptor 1; kinase | 99.44 | |
| 2qol_A | 373 | Ephrin receptor; receptor tyrosine kinase, juxtame | 99.43 | |
| 3cbl_A | 377 | C-FES, proto-oncogene tyrosine-protein kinase FES/ | 99.43 | |
| 3dbq_A | 343 | Dual specificity protein kinase TTK; MPS1 structur | 99.43 | |
| 2ozo_A | 613 | Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t | 99.42 | |
| 1opk_A | 495 | P150, C-ABL, proto-oncogene tyrosine-protein kinas | 99.42 | |
| 3qup_A | 323 | Tyrosine-protein kinase receptor TYRO3; protein ki | 99.42 | |
| 2v62_A | 345 | Serine/threonine-protein kinase VRK2; transferase, | 99.42 | |
| 3v5w_A | 689 | G-protein coupled receptor kinase 2; inhibitor com | 99.42 | |
| 2zmd_A | 390 | Dual specificity protein kinase TTK; MPS1, T686A, | 99.42 | |
| 2eva_A | 307 | TAK1 kinase - TAB1 chimera fusion protein; transfe | 99.41 | |
| 1rjb_A | 344 | FL cytokine receptor; kinase, structure, autoinhib | 99.41 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 99.41 | |
| 2h8h_A | 535 | Proto-oncogene tyrosine-protein kinase SRC; SRC ki | 99.41 | |
| 3l9p_A | 367 | Anaplastic lymphoma kinase; kinase domain, ATP-bin | 99.4 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 99.4 | |
| 3s95_A | 310 | LIMK-1, LIM domain kinase 1; structural genomics, | 99.4 | |
| 3c1x_A | 373 | Hepatocyte growth factor receptor; receptor tyrosi | 99.4 | |
| 1t46_A | 313 | HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcom | 99.4 | |
| 2i1m_A | 333 | Macrophage colony-stimulating factor 1 receptor; k | 99.4 | |
| 4fl3_A | 635 | Tyrosine-protein kinase SYK; transferase; HET: ANP | 99.39 | |
| 3ugc_A | 295 | Tyrosine-protein kinase JAK2; small molecule inhib | 99.39 | |
| 3brb_A | 313 | Proto-oncogene tyrosine-protein kinase MER; ATP-bi | 99.39 | |
| 3g2f_A | 336 | Bone morphogenetic protein receptor type-2; kinase | 99.39 | |
| 3sxs_A | 268 | Cytoplasmic tyrosine-protein kinase BMX; transfera | 99.38 | |
| 2xir_A | 316 | Vascular endothelial growth factor receptor 2; ang | 99.38 | |
| 3gxj_A | 303 | TGF-beta receptor type-1; ALK5, kinase, inhibitor, | 99.38 | |
| 2ivs_A | 314 | Proto-oncogene tyrosine-protein kinase receptor RE | 99.38 | |
| 4f9c_A | 361 | Cell division cycle 7-related protein kinase; Ser/ | 99.38 | |
| 1mp8_A | 281 | Focal adhesion kinase 1; tyrosine protein kinase, | 99.38 | |
| 3uto_A | 573 | Twitchin; kinase, muscle sarcomere, transferase; H | 99.38 | |
| 2jii_A | 352 | Serine/threonine-protein kinase VRK3 molecule: VA | 99.38 | |
| 4f0f_A | 287 | Serine/threonine-protein kinase ROCO4; LRRK2, ATP- | 99.38 | |
| 3fxz_A | 297 | Serine/threonine-protein kinase PAK 1; transferase | 99.38 | |
| 3mdy_A | 337 | Bone morphogenetic protein receptor type-1B; compl | 99.37 | |
| 3g33_A | 308 | Cell division protein kinase 4; Ser/Thr protein ki | 99.37 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 99.37 | |
| 1p4o_A | 322 | Insulin-like growth factor I receptor protein; IGF | 99.37 | |
| 4eqm_A | 294 | Protein kinase; transferase; HET: ANP; 3.00A {Stap | 99.37 | |
| 1mqb_A | 333 | Ephrin type-A receptor 2; tyrosine protein kinase, | 99.36 | |
| 3p1a_A | 311 | MYT1 kinase, membrane-associated tyrosine- and thr | 99.36 | |
| 2pvf_A | 334 | Fibroblast growth factor receptor 2; kinase domain | 99.36 | |
| 2c30_A | 321 | Serine/threonine-protein kinase PAK 6; CRIB domain | 99.36 | |
| 1b6c_B | 342 | TGF-B superfamily receptor type I; complex (isomer | 99.36 | |
| 1k9a_A | 450 | Carboxyl-terminal SRC kinase; COOH-terminal SRC ki | 99.36 | |
| 3dtc_A | 271 | Mitogen-activated protein kinase kinase kinase 9; | 99.36 | |
| 3cc6_A | 281 | Protein tyrosine kinase 2 beta; focal adhesion kin | 99.36 | |
| 4hcu_A | 269 | Tyrosine-protein kinase ITK/TSK; transferase-trans | 99.36 | |
| 3lxl_A | 327 | Tyrosine-protein kinase JAK3; TYK2, inflammation, | 99.35 | |
| 2y4i_B | 319 | KSR2, HKSR2, kinase suppressor of RAS 2; transfera | 99.35 | |
| 3lxp_A | 318 | Non-receptor tyrosine-protein kinase TYK2; JAK3, i | 99.35 | |
| 3h4j_B | 336 | AMPK kdaid, SNF1-like protein kinase SSP2; ATP-bin | 99.35 | |
| 3kfa_A | 288 | Tyrosine-protein kinase ABL1; CML, drug resistance | 99.35 | |
| 1qpc_A | 279 | LCK kinase; alpha beta fold, transferase; HET: PTR | 99.35 | |
| 3niz_A | 311 | Rhodanese family protein; structural genomics, str | 99.34 | |
| 3tki_A | 323 | Serine/threonine-protein kinase CHK1; cell checkpo | 99.34 | |
| 3ll6_A | 337 | Cyclin G-associated kinase; transferase, protein k | 99.34 | |
| 3gen_A | 283 | Tyrosine-protein kinase BTK; bruton'S tyrosine kin | 99.33 | |
| 1xbb_A | 291 | Tyrosine-protein kinase SYK; gleevec, STI-571, ima | 99.33 | |
| 3oz6_A | 388 | Mitogen-activated protein kinase 1, serine/threon | 99.33 | |
| 3kn6_A | 325 | Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1 | 99.33 | |
| 3q60_A | 371 | ROP5B; pseudokinase, transferase; HET: ATP; 1.72A | 99.33 | |
| 1u59_A | 287 | Tyrosine-protein kinase ZAP-70; transferase; HET: | 99.33 | |
| 3ttj_A | 464 | Mitogen-activated protein kinase 10; JNK3, protein | 99.33 | |
| 3zgw_A | 347 | Maternal embryonic leucine zipper kinase; transfer | 99.33 | |
| 3fe3_A | 328 | MAP/microtubule affinity-regulating kinase 3; seri | 99.32 | |
| 2yfx_A | 327 | Tyrosine-protein kinase receptor; nucleotide-bindi | 99.32 | |
| 3byv_A | 377 | Rhoptry kinase; malaria, transferase, structural g | 99.32 | |
| 2h34_A | 309 | Serine/threonine-protein kinase PKNE; apoenzyme, t | 99.32 | |
| 1wak_A | 397 | Serine/threonine-protein kinase SPRK1; SRPK, trans | 99.32 | |
| 4euu_A | 319 | Serine/threonine-protein kinase TBK1; ATP binding, | 99.32 | |
| 3e7e_A | 365 | HBUB1, BUB1A, mitotic checkpoint serine/threonine- | 99.32 | |
| 3mtl_A | 324 | Cell division protein kinase 16; pctaire1, indirub | 99.31 | |
| 3ork_A | 311 | Serine/threonine protein kinase; structural genomi | 99.31 | |
| 2zv2_A | 298 | Calcium/calmodulin-dependent protein kinase kinas; | 99.31 | |
| 3llt_A | 360 | Serine/threonine kinase-1, pflammer; lammer kinase | 99.31 | |
| 1ob3_A | 288 | PFPK5, cell division control protein 2 homolog; tr | 99.31 | |
| 1u46_A | 291 | ACK-1, activated CDC42 kinase 1; tyrosine kinase, | 99.31 | |
| 2vx3_A | 382 | Dual specificity tyrosine-phosphorylation- regula | 99.31 | |
| 2wqm_A | 310 | Serine/threonine-protein kinase NEK7; ATP-binding, | 99.31 | |
| 3f66_A | 298 | Hepatocyte growth factor receptor; C-Met, protein | 99.31 | |
| 3cek_A | 313 | Dual specificity protein kinase TTK; HMPS1, PYT, E | 99.3 | |
| 3kvw_A | 429 | DYRK2, dual specificity tyrosine-phosphorylation-r | 99.3 | |
| 1u5q_A | 348 | Serine/threonine protein kinase TAO2; transferase; | 99.3 | |
| 3kmu_A | 271 | ILK, integrin-linked kinase; cell adhesion, ANK re | 99.3 | |
| 2eue_A | 275 | Carbon catabolite derepressing protein kinase; kin | 99.3 | |
| 3t9t_A | 267 | Tyrosine-protein kinase ITK/TSK; kinase domain, al | 99.3 | |
| 1byg_A | 278 | CSK, protein (C-terminal SRC kinase); protein kina | 99.3 | |
| 2y0a_A | 326 | Death-associated protein kinase 1; transferase, ca | 99.3 | |
| 3lm5_A | 327 | Serine/threonine-protein kinase 17B; STK17B, serin | 99.3 | |
| 3soa_A | 444 | Calcium/calmodulin-dependent protein kinase type a | 99.3 | |
| 4aaa_A | 331 | Cyclin-dependent kinase-like 2; transferase, phosp | 99.3 | |
| 2pmi_A | 317 | Negative RE, cyclin-dependent protein kinase PHO85 | 99.3 | |
| 3dzo_A | 413 | Rhoptry kinase domain; parasitic disease, transfer | 99.3 | |
| 1tki_A | 321 | Titin; serine kinase, muscle, autoinhibition; 2.00 | 99.3 | |
| 3e3p_A | 360 | Protein kinase, putative glycogen synthase kinase; | 99.3 | |
| 2w4o_A | 349 | Calcium/calmodulin-dependent protein kinase type I | 99.29 | |
| 4e5w_A | 302 | Tyrosine-protein kinase JAK1; kinase domain, trans | 99.29 | |
| 3dls_A | 335 | PAS domain-containing serine/threonine-protein KI; | 99.29 | |
| 1nxk_A | 400 | MAP kinase-activated protein kinase 2; MK2, phosph | 99.29 | |
| 4agu_A | 311 | Cyclin-dependent kinase-like 1; transferase, phosp | 99.29 | |
| 1fvr_A | 327 | Tyrosine-protein kinase TIE-2; tyrosine kinase, tr | 99.29 | |
| 2j0j_A | 656 | Focal adhesion kinase 1; cell migration, FERM, tra | 99.29 | |
| 1o6l_A | 337 | RAC-beta serine/threonine protein kinase; protein | 99.29 | |
| 1q8y_A | 373 | SR protein kinase; transferase; HET: ADP ADE; 2.05 | 99.29 | |
| 3mi9_A | 351 | Cell division protein kinase 9; P-TEFB, HIV-1, pro | 99.29 | |
| 4fr4_A | 384 | YANK1, serine/threonine-protein kinase 32A; struct | 99.29 | |
| 2rio_A | 434 | Serine/threonine-protein kinase/endoribonuclease I | 99.29 | |
| 2eu9_A | 355 | Dual specificity protein kinase CLK3; kinase domai | 99.28 | |
| 3o0g_A | 292 | Cell division protein kinase 5; kinase activator c | 99.28 | |
| 1blx_A | 326 | Cyclin-dependent kinase 6; inhibitor protein, cycl | 99.28 | |
| 2a19_B | 284 | Interferon-induced, double-stranded RNA-activated | 99.28 | |
| 1z57_A | 339 | Dual specificity protein kinase CLK1; protein tyro | 99.28 | |
| 3pls_A | 298 | Macrophage-stimulating protein receptor; protein k | 99.28 | |
| 2vwi_A | 303 | Serine/threonine-protein kinase OSR1; STE kinase, | 99.28 | |
| 4dc2_A | 396 | Protein kinase C IOTA type; kinase, substrate, cel | 99.28 | |
| 3p23_A | 432 | Serine/threonine-protein kinase/endoribonuclease; | 99.28 | |
| 2xrw_A | 371 | Mitogen-activated protein kinase 8; transcription, | 99.27 | |
| 2yab_A | 361 | Death-associated protein kinase 2; apoptosis, tran | 99.27 | |
| 4ejn_A | 446 | RAC-alpha serine/threonine-protein kinase; AKT1, a | 99.27 | |
| 2yex_A | 276 | Serine/threonine-protein kinase CHK1; transferase, | 99.27 | |
| 2bdw_A | 362 | Hypothetical protein K11E8.1D; kinase, calmodulin | 99.27 | |
| 1j1b_A | 420 | Glycogen synthase kinase-3 beta; complex, TAU, AMP | 99.26 | |
| 3fdn_A | 279 | Serine/threonine-protein kinase 6; aurora kinase i | 99.26 | |
| 2x4f_A | 373 | Myosin light chain kinase family member 4; LUNG, b | 99.26 | |
| 3c0i_A | 351 | Peripheral plasma membrane protein CASK; neurexin, | 99.26 | |
| 1kob_A | 387 | Twitchin; kinase, intrasteric regulation; 2.30A {A | 99.26 | |
| 3a7i_A | 303 | MST3 kinase, serine/threonine kinase 24 (STE20 hom | 99.26 | |
| 3hko_A | 345 | Calcium/calmodulin-dependent protein kinase with d | 99.26 | |
| 1ua2_A | 346 | CAK, cell division protein kinase 7; cell cycle, p | 99.26 | |
| 3i6u_A | 419 | CDS1, serine/threonine-protein kinase CHK2; Ser/Th | 99.26 | |
| 3is5_A | 285 | Calcium-dependent protein kinase; CDPK, structural | 99.25 | |
| 3fme_A | 290 | Dual specificity mitogen-activated protein kinase; | 99.25 | |
| 3kk8_A | 284 | Calcium/calmodulin dependent protein kinase II; AT | 99.25 | |
| 4eut_A | 396 | Serine/threonine-protein kinase TBK1; ATP binding, | 99.25 | |
| 3txo_A | 353 | PKC-L, NPKC-ETA, protein kinase C ETA type; phosph | 99.25 | |
| 2qr7_A | 342 | Ribosomal protein S6 kinase alpha-3; kinase domain | 99.25 | |
| 2w1i_A | 326 | JAK2; chromosomal rearrangement, nucleotide-bindin | 99.25 | |
| 4aw2_A | 437 | Serine/threonine-protein kinase MRCK alpha; transf | 99.24 | |
| 3cok_A | 278 | Serine/threonine-protein kinase PLK4; POLO-like ki | 99.24 | |
| 2a2a_A | 321 | Death-associated protein kinase 2; autoinhibition, | 99.24 | |
| 2w5a_A | 279 | Serine/threonine-protein kinase NEK2; Ser/Thr prot | 99.24 | |
| 2wtk_C | 305 | Serine/threonine-protein kinase 11; transferase-me | 99.24 | |
| 1xjd_A | 345 | Protein kinase C, theta type; PKC-theta, ATP, AMP, | 99.24 | |
| 2y94_A | 476 | 5'-AMP-activated protein kinase catalytic subunit; | 99.24 | |
| 3qd2_B | 332 | Eukaryotic translation initiation factor 2-alpha; | 99.24 | |
| 3aln_A | 327 | Dual specificity mitogen-activated protein kinase; | 99.24 | |
| 3gbz_A | 329 | Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide- | 99.24 | |
| 3rp9_A | 458 | Mitogen-activated protein kinase; structural genom | 99.24 | |
| 4exu_A | 371 | Mitogen-activated protein kinase 13; P38 kinase, t | 99.23 | |
| 2b9h_A | 353 | MAP kinase FUS3, mitogen-activated protein kinase | 99.23 | |
| 1cm8_A | 367 | Phosphorylated MAP kinase P38-gamma; phosphorylati | 99.23 | |
| 4e7w_A | 394 | Glycogen synthase kinase 3; GSK3, PTyr195, transfe | 99.23 | |
| 2fst_X | 367 | Mitogen-activated protein kinase 14; active mutant | 99.23 | |
| 1t4h_A | 290 | Serine/threonine-protein kinase WNK1; protein seri | 99.23 | |
| 3rgf_A | 405 | Cyclin-dependent kinase 8; protein kinase complex, | 99.23 | |
| 4fvq_A | 289 | Tyrosine-protein kinase JAK2; janus protein kinase | 99.23 | |
| 3a8x_A | 345 | Protein kinase C IOTA type; transferase; HET: TPO; | 99.23 | |
| 1rdq_E | 350 | PKA C-alpha, CAMP-dependent protein kinase, alpha- | 99.23 | |
| 3coi_A | 353 | Mitogen-activated protein kinase 13; P38D, P38delt | 99.23 | |
| 2clq_A | 295 | Mitogen-activated protein kinase kinase kinase 5; | 99.23 | |
| 3pfq_A | 674 | PKC-B, PKC-beta, protein kinase C beta type; phosp | 99.23 | |
| 3a62_A | 327 | Ribosomal protein S6 kinase beta-1; kinase domain, | 99.22 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 99.22 | |
| 2i0e_A | 353 | Protein kinase C-beta II; serine/threonine protein | 99.22 | |
| 3qyz_A | 364 | Mitogen-activated protein kinase 1; transferase, s | 99.22 | |
| 3bhy_A | 283 | Death-associated protein kinase 3; death associate | 99.22 | |
| 3gni_B | 389 | Strad alpha; kinase fold, pseudokinase, alpha heli | 99.22 | |
| 2acx_A | 576 | G protein-coupled receptor kinase 6; GRK, G transf | 99.22 | |
| 2r5t_A | 373 | Serine/threonine-protein kinase SGK1; AGC protein | 99.22 | |
| 2rku_A | 294 | Serine/threonine-protein kinase PLK1; structure of | 99.22 | |
| 2owb_A | 335 | Serine/threonine-protein kinase PLK1; catalytic do | 99.22 | |
| 3v8s_A | 410 | RHO-associated protein kinase 1; dimerization, myo | 99.21 | |
| 2buj_A | 317 | Serine/threonine-protein kinase 16; transferase, A | 99.21 | |
| 2vgo_A | 284 | Serine/threonine-protein kinase 12-A; nucleotide-b | 99.21 | |
| 2y7j_A | 365 | Phosphorylase B kinase gamma catalytic chain, test | 99.21 | |
| 2r3i_A | 299 | Cell division protein kinase 2; serine/threonine-p | 99.21 | |
| 3an0_A | 340 | Dual specificity mitogen-activated protein kinase; | 99.21 | |
| 1fot_A | 318 | TPK1 delta, CAMP-dependent protein kinase type 1; | 99.21 | |
| 3pg1_A | 362 | Mitogen-activated protein kinase, putative (MAP K | 99.21 | |
| 3com_A | 314 | Serine/threonine-protein kinase 4; MST1, STE20-lik | 99.2 | |
| 2x7f_A | 326 | TRAF2 and NCK-interacting protein kinase; serine/t | 99.2 | |
| 2jam_A | 304 | Calcium/calmodulin-dependent protein kinase type 1 | 99.2 | |
| 1vzo_A | 355 | Ribosomal protein S6 kinase alpha 5; protein kinas | 99.2 | |
| 2h6d_A | 276 | 5'-AMP-activated protein kinase catalytic subunit | 99.2 | |
| 3nsz_A | 330 | CK II alpha, casein kinase II subunit alpha; inhib | 99.19 | |
| 3uc3_A | 361 | Serine/threonine-protein kinase SRK2I; SNRK2, ABA | 99.19 | |
| 2vd5_A | 412 | DMPK protein; serine/threonine-protein kinase, kin | 99.19 | |
| 3c4z_A | 543 | Rhodopsin kinase; Ser/Thr kinase, RGS homology dom | 99.19 | |
| 2dyl_A | 318 | Dual specificity mitogen-activated protein kinase | 99.19 | |
| 3f3z_A | 277 | Calcium/calmodulin-dependent protein kinase with d | 99.18 | |
| 2ac3_A | 316 | MAP kinase-interacting serine/threonine kinase 2; | 99.18 | |
| 3eb0_A | 383 | Putative uncharacterized protein; kinase cryptospo | 99.18 | |
| 3a99_A | 320 | Proto-oncogene serine/threonine-protein kinase PI; | 99.18 | |
| 3n9x_A | 432 | Phosphotransferase; malaria kinase, structural gen | 99.18 | |
| 3eqc_A | 360 | Dual specificity mitogen-activated protein kinase; | 99.18 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 99.18 | |
| 3fhr_A | 336 | MAP kinase-activated protein kinase 3; kinase-inhi | 99.17 | |
| 2i6l_A | 320 | Mitogen-activated protein kinase 6; MAPK6, ERK3, e | 99.16 | |
| 1x8b_A | 289 | WEE1HU, WEE1-like protein kinase; cell cycle, tran | 99.16 | |
| 3mwu_A | 486 | Calmodulin-domain protein kinase 1; serine/threoni | 99.16 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 99.15 | |
| 2pml_X | 348 | PFPK7, Ser/Thr protein kinase; phosphorylati trans | 99.14 | |
| 3lij_A | 494 | Calcium/calmodulin dependent protein kinase with A | 99.14 | |
| 2ycf_A | 322 | Serine/threonine-protein kinase CHK2; transferase, | 99.13 | |
| 2j7t_A | 302 | Serine/threonine-protein kinase 10; transferase, A | 99.13 | |
| 2iwi_A | 312 | Serine/threonine-protein kinase PIM-2; nucleotide- | 99.13 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 99.12 | |
| 1phk_A | 298 | Phosphorylase kinase; glycogen metabolism, transfe | 99.12 | |
| 3nyv_A | 484 | Calmodulin-domain protein kinase 1; serine/threoni | 99.1 | |
| 3q5i_A | 504 | Protein kinase; CDPK, malaria, phosphotransferase, | 99.1 | |
| 1zy4_A | 303 | Serine/threonine-protein kinase GCN2; translation | 99.07 | |
| 3qa8_A | 676 | MGC80376 protein; kinase ubiquitin-like domain, ph | 99.04 | |
| 2wei_A | 287 | Calmodulin-domain protein kinase 1, putative; nucl | 99.03 | |
| 3uqc_A | 286 | Probable conserved transmembrane protein; structur | 98.96 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.91 | |
| 4fs7_A | 394 | Uncharacterized protein; leucine-rich repeats, pro | 98.89 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 98.84 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 98.81 | |
| 4gt6_A | 394 | Cell surface protein; leucine rich repeats, putati | 98.79 | |
| 4fs7_A | 394 | Uncharacterized protein; leucine-rich repeats, pro | 98.71 | |
| 3m2w_A | 299 | MAP kinase-activated protein kinase 2; small molec | 98.66 | |
| 4gt6_A | 394 | Cell surface protein; leucine rich repeats, putati | 98.59 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 98.4 | |
| 4h09_A | 379 | Hypothetical leucine rich repeat protein; two LRR_ | 98.35 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 98.32 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 98.28 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 98.18 | |
| 2vuw_A | 336 | Serine/threonine-protein kinase haspin; cell cycle | 98.16 | |
| 4h09_A | 379 | Hypothetical leucine rich repeat protein; two LRR_ | 98.07 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 97.84 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 97.76 | |
| 1pgv_A | 197 | TMD-1, tropomodulin TMD-1; structural genomics, PS | 97.13 | |
| 1pgv_A | 197 | TMD-1, tropomodulin TMD-1; structural genomics, PS | 96.84 | |
| 4azs_A | 569 | Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15 | 96.79 | |
| 3rfe_A | 130 | Platelet glycoprotein IB beta chain; platelet surf | 96.07 | |
| 3rfe_A | 130 | Platelet glycoprotein IB beta chain; platelet surf | 95.84 | |
| 2jwp_A | 174 | Malectin, MGC80075; sugar binding, sugar binding p | 95.47 | |
| 3en9_A | 540 | Glycoprotease, O-sialoglycoprotein endopeptidase/p | 92.85 |
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-39 Score=350.57 Aligned_cols=294 Identities=30% Similarity=0.491 Sum_probs=241.1
Q ss_pred CHHHHHHHHHHHHhCCCC-CCCCCcCCCCCCCCCCCCCcccCCCCCCCCCCeeccccCCCCCeeeEEEEEEcccCcCC--
Q 038019 3 DKHAVRALNSILQQWDAP-AVPLWNISGNPCSGSALNATDSEFESPNNNPAIVCNCTFDNGATCHITKLRVYGLNKKG-- 79 (866)
Q Consensus 3 ~~~~~~~l~~~~~~~~~~-~~~~w~~~~~~C~~~~~~~~~~~~~~~~~~~~v~C~~~~~~~~~~~v~~L~l~~~~l~~-- 79 (866)
+++|++||++||+++.++ .+.+|+.+.+||.+ .| .||.|+... ...+|+.|++++|++++
T Consensus 4 ~~~~~~aL~~~k~~~~~~~~l~~W~~~~~~C~~--~w------------~gv~C~~~~---~~~~l~~L~L~~~~l~~~~ 66 (313)
T 1ogq_A 4 NPQDKQALLQIKKDLGNPTTLSSWLPTTDCCNR--TW------------LGVLCDTDT---QTYRVNNLDLSGLNLPKPY 66 (313)
T ss_dssp CHHHHHHHHHHHHHTTCCGGGTTCCTTSCTTTT--CS------------TTEEECCSS---SCCCEEEEEEECCCCSSCE
T ss_pred CHHHHHHHHHHHHhcCCcccccCCCCCCCCCcC--CC------------cceEeCCCC---CCceEEEEECCCCCccCCc
Confidence 589999999999999766 46789877889942 25 799997431 12589999999999999
Q ss_pred CCCcccCCCCCCCEEEccC-CCCCCCCCccccCCCCcCEEeccCCcCCCCCCccccCCCCCCEeeccCCCCCCCCchhhc
Q 038019 80 VIPEELVTLQYLTVLKIDQ-NFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKELTVLAFGTNNFSGALPPELG 158 (866)
Q Consensus 80 ~~p~~l~~l~~L~~L~Ls~-n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~ 158 (866)
.+|..|.++++|++|+|++ |.+.+.+|..|+++++|++|+|++|++++.+|..|.++++|++|+|++|.+++.+|..+.
T Consensus 67 ~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 146 (313)
T 1ogq_A 67 PIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS 146 (313)
T ss_dssp ECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGG
T ss_pred ccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHh
Confidence 8999999999999999995 999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccEEEeecCCCCCCChhhhhcCc-CCCEEEecCCCCCCCCcccccCCCCCCeEEccCCCCCCCCchhhcCCCCCCE
Q 038019 159 NLAKLEQLYIDSCGAGGEIPSTFAKLR-NMQTLWASDNPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLES 237 (866)
Q Consensus 159 ~l~~L~~L~L~~n~l~~~~p~~~~~l~-~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~ 237 (866)
.+++|++|+|++|.+++.+|..+..++ +|++|++++|++++.+|..+..++ |+.|+|++|.+++.+|..|..+++|+.
T Consensus 147 ~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 225 (313)
T 1ogq_A 147 SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQK 225 (313)
T ss_dssp GCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSE
T ss_pred cCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCE
Confidence 999999999999999999999999998 999999999999989999999887 999999999999888888888888888
Q ss_pred EEccCccCCCCCchhhhcCCCCCceeccCcccccCCCcccCCCCCcCEEeeecCcCcccCCcccCCCCCCcEEECcCCC
Q 038019 238 LQMSDIYNVSSSLDFVMSLKNLTDLSLRNALITGTIPFGIGELQMLQILDLSFNNLTGQIPATLFNIDSLEYLFLGNNS 316 (866)
Q Consensus 238 L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~ 316 (866)
|++++|.+.... +.+..+++|++|+|++|.+++.+|..+..+++|+.|+|++|++++.+|.. ..+++|+.|++++|+
T Consensus 226 L~L~~N~l~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 226 IHLAKNSLAFDL-GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK 302 (313)
T ss_dssp EECCSSEECCBG-GGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSS
T ss_pred EECCCCceeeec-CcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCC
Confidence 877776654222 22445556666666666666555555555666666666666665555554 455555555555555
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-38 Score=379.37 Aligned_cols=333 Identities=20% Similarity=0.264 Sum_probs=289.4
Q ss_pred HHHHHHHHHHHHhCCCCC----------CCCCcCCCCCCCCCCCCCcccCCCCCCCCCCeeccccCCCCCeeeEEEEEEc
Q 038019 4 KHAVRALNSILQQWDAPA----------VPLWNISGNPCSGSALNATDSEFESPNNNPAIVCNCTFDNGATCHITKLRVY 73 (866)
Q Consensus 4 ~~~~~~l~~~~~~~~~~~----------~~~w~~~~~~C~~~~~~~~~~~~~~~~~~~~v~C~~~~~~~~~~~v~~L~l~ 73 (866)
..|++||.+++.+++.+. ..+|+.+.++|. |+ .+.||.|+.. .+|+.|+|.
T Consensus 29 ~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~~~~c~----w~---------~~~GV~C~~~------~~V~~L~L~ 89 (636)
T 4eco_A 29 IKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKELDM----WG---------AQPGVSLNSN------GRVTGLSLE 89 (636)
T ss_dssp HHHHHHHHHHHHHTTGGGCCCCC------CCCCCSSCGGG----TT---------CCTTEEECTT------CCEEEEECT
T ss_pred HHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCCCCCccc----cc---------CCCCeEEcCC------CCEEEEEec
Confidence 469999999999986443 124555555552 31 1279999742 589999999
Q ss_pred ccCcCCCCCcccCCCCCCCEEEccCCC-----------------------------------------------------
Q 038019 74 GLNKKGVIPEELVTLQYLTVLKIDQNF----------------------------------------------------- 100 (866)
Q Consensus 74 ~~~l~~~~p~~l~~l~~L~~L~Ls~n~----------------------------------------------------- 100 (866)
++++.|.+|++|++|++|++|+|++|.
T Consensus 90 ~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~ 169 (636)
T 4eco_A 90 GFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSD 169 (636)
T ss_dssp TSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHC
T ss_pred CcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcC
Confidence 999999999999999999999999984
Q ss_pred -------------------------CCCCCCccccCCCCcCEEeccCCcCCCC-----------------CCcccc--CC
Q 038019 101 -------------------------FTGPLPSFIGNLSRLMFLSFSHNDFSGP-----------------VPRELG--NL 136 (866)
Q Consensus 101 -------------------------l~~~~p~~l~~l~~L~~L~Ls~N~l~~~-----------------~p~~l~--~l 136 (866)
+++ +|..|+++++|++|+|++|.+++. +|..++ ++
T Consensus 170 l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l 248 (636)
T 4eco_A 170 PQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNL 248 (636)
T ss_dssp TTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGC
T ss_pred ccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhccc
Confidence 334 788899999999999999999986 999999 99
Q ss_pred CCCCEeeccCCCCCCCCchhhcCCCCccEEEeecCC-CCC-CChhhhhcC------cCCCEEEecCCCCCCCCcc--ccc
Q 038019 137 KELTVLAFGTNNFSGALPPELGNLAKLEQLYIDSCG-AGG-EIPSTFAKL------RNMQTLWASDNPFTGKIPD--FIG 206 (866)
Q Consensus 137 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~-l~~-~~p~~~~~l------~~L~~L~L~~N~l~~~~p~--~l~ 206 (866)
++|++|+|++|++.+.+|..|+++++|++|+|++|+ +++ .+|..++++ ++|++|+|++|+++ .+|. .++
T Consensus 249 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~ 327 (636)
T 4eco_A 249 KDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQ 327 (636)
T ss_dssp TTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHT
T ss_pred CCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhc
Confidence 999999999999999999999999999999999998 998 899999887 99999999999999 8888 999
Q ss_pred CCCCCCeEEccCCCCCCCCchhhcCCCCCCEEEccCccCCCCCchhhhcCCC-CCceeccCcccccCCCcccCCCC--Cc
Q 038019 207 NWTKLKSLRFQGNSFQGPIPSSLSKLASLESLQMSDIYNVSSSLDFVMSLKN-LTDLSLRNALITGTIPFGIGELQ--ML 283 (866)
Q Consensus 207 ~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~-L~~L~L~~n~l~~~~p~~~~~l~--~L 283 (866)
++++|++|+|++|.++|.+| .|.++++|+.|++++|.+. ..+..+..+++ |+.|++++|.++ .+|..+..++ +|
T Consensus 328 ~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L 404 (636)
T 4eco_A 328 KMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVM 404 (636)
T ss_dssp TCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCE
T ss_pred cCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCcc
Confidence 99999999999999999999 9999999999999999887 33445788888 999999999999 7888877765 89
Q ss_pred CEEeeecCcCcccCCcccC-------CCCCCcEEECcCCCCcccCCccc---CCCCCEEEeeCCCCCCccCccccc----
Q 038019 284 QILDLSFNNLTGQIPATLF-------NIDSLEYLFLGNNSLSGTLPDQK---SENLQKIDLSHNHLSGTFPLWVNS---- 349 (866)
Q Consensus 284 ~~L~Ls~N~l~~~~p~~l~-------~l~~L~~L~L~~N~l~g~~p~~~---~~~L~~L~Ls~N~l~g~~p~~~~~---- 349 (866)
+.|++++|.+++.+|..+. .+++|++|+|++|+++ .+|... .++|+.|+|++|+++ .+|.....
T Consensus 405 ~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~ 482 (636)
T 4eco_A 405 SAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENE 482 (636)
T ss_dssp EEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTE
T ss_pred CEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccc
Confidence 9999999999999999888 8889999999999999 556532 578999999999999 77765432
Q ss_pred ------ccc-cccccccccc
Q 038019 350 ------ELQ-MNLAVNNFKF 362 (866)
Q Consensus 350 ------~~~-l~l~~N~~~~ 362 (866)
.++ |+|++|.++.
T Consensus 483 ~~~~l~~L~~L~Ls~N~l~~ 502 (636)
T 4eco_A 483 NFKNTYLLTSIDLRFNKLTK 502 (636)
T ss_dssp ECTTGGGCCEEECCSSCCCB
T ss_pred cccccCCccEEECcCCcCCc
Confidence 344 9999999883
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.8e-38 Score=378.37 Aligned_cols=353 Identities=18% Similarity=0.253 Sum_probs=290.3
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCcCCC-----CC--CCCCCCCCcccCCCCCCCCCCeeccccCCCCCeeeEEEEEEcccC
Q 038019 4 KHAVRALNSILQQWDAPAVPLWNISG-----NP--CSGSALNATDSEFESPNNNPAIVCNCTFDNGATCHITKLRVYGLN 76 (866)
Q Consensus 4 ~~~~~~l~~~~~~~~~~~~~~w~~~~-----~~--C~~~~~~~~~~~~~~~~~~~~v~C~~~~~~~~~~~v~~L~l~~~~ 76 (866)
.+|++||++||++|++| +|+.++ +| | .|....+...-+...||.|++ .++|+.|+|++++
T Consensus 268 ~~d~~ALl~~k~~l~~~---~W~~~~~~~~~~~~~C----~W~~~~~~~~w~~~~GV~C~~------~~~V~~L~Ls~~~ 334 (876)
T 4ecn_A 268 IKDYKALKAIWEALDGK---NWRYYSGTINNTIHSL----NWNFNKELDMWGDQPGVDLDN------NGRVTGLSLAGFG 334 (876)
T ss_dssp HHHHHHHHHHHHHTTGG---GCCCCCSSCSSCCCCC----SCCCSSCGGGTTCCTTEEECT------TSCEEEEECTTTC
T ss_pred hHHHHHHHHHHHHcCCC---CCCcCCCcccccCCcc----ccccccccccccCcCceEecC------CCCEEEEECccCC
Confidence 57999999999999866 697654 66 5 352222211112238999985 2589999999999
Q ss_pred cCCCCCcccCCCCCCCEEEc-cCCCCCCC---------------------------------------------------
Q 038019 77 KKGVIPEELVTLQYLTVLKI-DQNFFTGP--------------------------------------------------- 104 (866)
Q Consensus 77 l~~~~p~~l~~l~~L~~L~L-s~n~l~~~--------------------------------------------------- 104 (866)
+.|.+|++|++|++|++|+| ++|.++|.
T Consensus 335 L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~ 414 (876)
T 4ecn_A 335 AKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEM 414 (876)
T ss_dssp CEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTS
T ss_pred CCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCccc
Confidence 99999999999999999999 77754333
Q ss_pred -------------------------CCccccCCCCcCEEeccCCcCCC-----------------CCCcccc--CCCCCC
Q 038019 105 -------------------------LPSFIGNLSRLMFLSFSHNDFSG-----------------PVPRELG--NLKELT 140 (866)
Q Consensus 105 -------------------------~p~~l~~l~~L~~L~Ls~N~l~~-----------------~~p~~l~--~l~~L~ 140 (866)
+|..|++|++|++|+|++|+|++ .+|..++ ++++|+
T Consensus 415 ~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~ 494 (876)
T 4ecn_A 415 KPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLT 494 (876)
T ss_dssp CCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCC
T ss_pred cccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCC
Confidence 78889999999999999999998 3999988 999999
Q ss_pred EeeccCCCCCCCCchhhcCCCCccEEEeecCC-CCC-CChhhhhcCc-------CCCEEEecCCCCCCCCcc--cccCCC
Q 038019 141 VLAFGTNNFSGALPPELGNLAKLEQLYIDSCG-AGG-EIPSTFAKLR-------NMQTLWASDNPFTGKIPD--FIGNWT 209 (866)
Q Consensus 141 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~-l~~-~~p~~~~~l~-------~L~~L~L~~N~l~~~~p~--~l~~l~ 209 (866)
+|+|++|++.+.+|..|+++++|+.|+|++|+ +++ .+|..+++++ +|++|+|++|.++ .+|. .+++++
T Consensus 495 ~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~ 573 (876)
T 4ecn_A 495 DVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMV 573 (876)
T ss_dssp EEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCT
T ss_pred EEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCC
Confidence 99999999999999999999999999999998 998 8999888777 9999999999999 8888 999999
Q ss_pred CCCeEEccCCCCCCCCchhhcCCCCCCEEEccCccCCCCCchhhhcCCC-CCceeccCcccccCCCcccCCCCC--cCEE
Q 038019 210 KLKSLRFQGNSFQGPIPSSLSKLASLESLQMSDIYNVSSSLDFVMSLKN-LTDLSLRNALITGTIPFGIGELQM--LQIL 286 (866)
Q Consensus 210 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~-L~~L~L~~n~l~~~~p~~~~~l~~--L~~L 286 (866)
+|+.|+|++|.++ .+| .|.++++|+.|+|++|.+. ..+..+..+++ |+.|+|++|.++ .+|..+..++. |+.|
T Consensus 574 ~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L 649 (876)
T 4ecn_A 574 KLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSV 649 (876)
T ss_dssp TCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEE
T ss_pred CCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEE
Confidence 9999999999999 788 8999999999999999988 44456888888 999999999999 77888777654 9999
Q ss_pred eeecCcCcccCCcc---cC--CCCCCcEEECcCCCCcccCCccc---CCCCCEEEeeCCCCCCccCccccc---------
Q 038019 287 DLSFNNLTGQIPAT---LF--NIDSLEYLFLGNNSLSGTLPDQK---SENLQKIDLSHNHLSGTFPLWVNS--------- 349 (866)
Q Consensus 287 ~Ls~N~l~~~~p~~---l~--~l~~L~~L~L~~N~l~g~~p~~~---~~~L~~L~Ls~N~l~g~~p~~~~~--------- 349 (866)
+|++|++.+.+|.. +. .+++|+.|+|++|+++ .+|... .++|+.|+|++|+++ .+|.+...
T Consensus 650 ~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl 727 (876)
T 4ecn_A 650 DFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNT 727 (876)
T ss_dssp ECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTG
T ss_pred ECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-ccChHHhcccccccccc
Confidence 99999998876632 22 3458999999999998 566543 478999999999998 67765432
Q ss_pred -ccc-ccccccccccccCCCc--cCCCcccc
Q 038019 350 -ELQ-MNLAVNNFKFDISNIS--VFPGLNCL 376 (866)
Q Consensus 350 -~~~-l~l~~N~~~~~~~~~~--~~p~l~~l 376 (866)
.++ |+|++|+++.-...+. .++.|..+
T Consensus 728 ~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L 758 (876)
T 4ecn_A 728 YLLTTIDLRFNKLTSLSDDFRATTLPYLSNM 758 (876)
T ss_dssp GGCCEEECCSSCCCCCCGGGSTTTCTTCCEE
T ss_pred CCccEEECCCCCCccchHHhhhccCCCcCEE
Confidence 333 8999998873322232 44555443
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-37 Score=378.60 Aligned_cols=333 Identities=28% Similarity=0.380 Sum_probs=232.5
Q ss_pred CHHHHHHHHHHHHhCCCC-CCCCCcCCCCCCCCCCCCCcccCCCCCCCCCCeeccccCCCCCeeeEEEEEEcccCcCCC-
Q 038019 3 DKHAVRALNSILQQWDAP-AVPLWNISGNPCSGSALNATDSEFESPNNNPAIVCNCTFDNGATCHITKLRVYGLNKKGV- 80 (866)
Q Consensus 3 ~~~~~~~l~~~~~~~~~~-~~~~w~~~~~~C~~~~~~~~~~~~~~~~~~~~v~C~~~~~~~~~~~v~~L~l~~~~l~~~- 80 (866)
.++|++||++||+++.+| .+++|+.+.||| .| .||.|+ . .+|+.|+|+++.+.|.
T Consensus 10 ~~~~~~all~~k~~~~~~~~l~~W~~~~~~C----~w------------~gv~C~-~------~~v~~L~L~~~~l~g~~ 66 (768)
T 3rgz_A 10 LYREIHQLISFKDVLPDKNLLPDWSSNKNPC----TF------------DGVTCR-D------DKVTSIDLSSKPLNVGF 66 (768)
T ss_dssp HHHHHHHHHHHHTTCSCTTSSTTCCTTSCGG----GS------------TTEEEE-T------TEEEEEECTTSCCCEEH
T ss_pred CHHHHHHHHHHHhhCCCcccccCCCCCCCCc----CC------------cceEEC-C------CcEEEEECCCCCcCCcc
Confidence 367999999999999766 578998778999 46 799997 1 4899999999998887
Q ss_pred --CCc-----------------------ccCCCCCCCEEEccCCCCCCCCCc--cccCCCCcCEEeccCCcCCCCCCccc
Q 038019 81 --IPE-----------------------ELVTLQYLTVLKIDQNFFTGPLPS--FIGNLSRLMFLSFSHNDFSGPVPREL 133 (866)
Q Consensus 81 --~p~-----------------------~l~~l~~L~~L~Ls~n~l~~~~p~--~l~~l~~L~~L~Ls~N~l~~~~p~~l 133 (866)
+|+ .|+++++|++|||++|.++|.+|. .++++++|++|+|++|.+++.+|..+
T Consensus 67 ~~l~~~l~~L~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~ 146 (768)
T 3rgz_A 67 SAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSG 146 (768)
T ss_dssp HHHHHHTTTCTTCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCS
T ss_pred CccChhHhccCcccccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHH
Confidence 554 455556666666666666655555 56666666666666666665555544
Q ss_pred -cCCCCCCEeeccCCCCCCCCchh---hcCCCCccEEEeecCCCCCCChhhhhcCcCCCEEEecCCCCCCCCcccccCCC
Q 038019 134 -GNLKELTVLAFGTNNFSGALPPE---LGNLAKLEQLYIDSCGAGGEIPSTFAKLRNMQTLWASDNPFTGKIPDFIGNWT 209 (866)
Q Consensus 134 -~~l~~L~~L~Ls~N~l~~~~p~~---l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 209 (866)
.++++|++|+|++|.+++..|.. +.++++|++|+|++|.+++..|. ..+++|++|+|++|.+++.+|. +++++
T Consensus 147 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~-l~~l~ 223 (768)
T 3rgz_A 147 GLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV--SRCVNLEFLDVSSNNFSTGIPF-LGDCS 223 (768)
T ss_dssp CCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBC--TTCTTCCEEECCSSCCCSCCCB-CTTCC
T ss_pred hccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCc--ccCCcCCEEECcCCcCCCCCcc-cccCC
Confidence 56666666666666666555555 55666666666666666655443 5667777777777777766665 77777
Q ss_pred CCCeEEccCCCCCCCCchhhcCCCCCCEEEccCccCCCCCchhhhcCCCCCceeccCcccccCCCcccCCC-CCcCEEee
Q 038019 210 KLKSLRFQGNSFQGPIPSSLSKLASLESLQMSDIYNVSSSLDFVMSLKNLTDLSLRNALITGTIPFGIGEL-QMLQILDL 288 (866)
Q Consensus 210 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l-~~L~~L~L 288 (866)
+|++|+|++|.+++.+|..|.++++|+.|++++|.+....+.. .+++|++|+|++|.+++.+|..+... ++|+.|+|
T Consensus 224 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~L 301 (768)
T 3rgz_A 224 ALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDL 301 (768)
T ss_dssp SCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEEC
T ss_pred CCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEEC
Confidence 7777777777777777777777777777777777664322222 66777777777777777777766654 77777777
Q ss_pred ecCcCcccCCcccCCCCCCcEEECcCCCCcccCCcc---cCCCCCEEEeeCCCCCCccCccccc---ccc-ccccccccc
Q 038019 289 SFNNLTGQIPATLFNIDSLEYLFLGNNSLSGTLPDQ---KSENLQKIDLSHNHLSGTFPLWVNS---ELQ-MNLAVNNFK 361 (866)
Q Consensus 289 s~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~~p~~---~~~~L~~L~Ls~N~l~g~~p~~~~~---~~~-l~l~~N~~~ 361 (866)
++|.+++.+|..+..+++|++|+|++|+++|.+|.. ..++|+.|++++|++++.+|..+.. .++ |++++|.+.
T Consensus 302 s~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~ 381 (768)
T 3rgz_A 302 SGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFS 381 (768)
T ss_dssp CSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEE
T ss_pred cCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcC
Confidence 777777777777777777777777777777777643 2467777777777777777766542 233 777777776
Q ss_pred cc
Q 038019 362 FD 363 (866)
Q Consensus 362 ~~ 363 (866)
+.
T Consensus 382 ~~ 383 (768)
T 3rgz_A 382 GP 383 (768)
T ss_dssp EE
T ss_pred CC
Confidence 54
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-36 Score=368.10 Aligned_cols=303 Identities=31% Similarity=0.468 Sum_probs=242.9
Q ss_pred eEEEEEEcccCcCCCCCcc-cCCCCCCCEEEccCCCCCCCCCccc-------------------------cC--CCCcCE
Q 038019 66 HITKLRVYGLNKKGVIPEE-LVTLQYLTVLKIDQNFFTGPLPSFI-------------------------GN--LSRLMF 117 (866)
Q Consensus 66 ~v~~L~l~~~~l~~~~p~~-l~~l~~L~~L~Ls~n~l~~~~p~~l-------------------------~~--l~~L~~ 117 (866)
+++.|++++|.++|.+|.. |.++++|++|+|++|.+++.+|..+ .. +++|++
T Consensus 319 ~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~ 398 (768)
T 3rgz_A 319 LLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQE 398 (768)
T ss_dssp TCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCE
T ss_pred CccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccE
Confidence 4555666666555555544 5555555555555555554444433 33 556777
Q ss_pred EeccCCcCCCCCCccccCCCCCCEeeccCCCCCCCCchhhcCCCCccEEEeecCCCCCCChhhhhcCcCCCEEEecCCCC
Q 038019 118 LSFSHNDFSGPVPRELGNLKELTVLAFGTNNFSGALPPELGNLAKLEQLYIDSCGAGGEIPSTFAKLRNMQTLWASDNPF 197 (866)
Q Consensus 118 L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l 197 (866)
|+|++|.+++.+|..|+++++|++|+|++|.+++.+|..++.+++|+.|+|++|.+++.+|..+..+++|++|++++|++
T Consensus 399 L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l 478 (768)
T 3rgz_A 399 LYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDL 478 (768)
T ss_dssp EECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCC
T ss_pred EECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcc
Confidence 77777777777888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CCCCcccccCCCCCCeEEccCCCCCCCCchhhcCCCCCCEEEccCccCCCCCchhhhcCCCCCceeccCcccccCCCcc-
Q 038019 198 TGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLESLQMSDIYNVSSSLDFVMSLKNLTDLSLRNALITGTIPFG- 276 (866)
Q Consensus 198 ~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~- 276 (866)
++.+|..+.++++|++|+|++|++++.+|..++.+++|+.|++++|.+....+..+..+++|+.|+|++|.++|.+|..
T Consensus 479 ~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~ 558 (768)
T 3rgz_A 479 TGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM 558 (768)
T ss_dssp CSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGG
T ss_pred cCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHH
Confidence 8888888888888888888888888888888888888888888888887667777888888888888888888766643
Q ss_pred ---------------------------------------------------------------------cCCCCCcCEEe
Q 038019 277 ---------------------------------------------------------------------IGELQMLQILD 287 (866)
Q Consensus 277 ---------------------------------------------------------------------~~~l~~L~~L~ 287 (866)
++.+++|+.|+
T Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~Ld 638 (768)
T 3rgz_A 559 FKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLD 638 (768)
T ss_dssp GTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEE
T ss_pred hcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEE
Confidence 33457789999
Q ss_pred eecCcCcccCCcccCCCCCCcEEECcCCCCcccCCccc--CCCCCEEEeeCCCCCCccCcccccc--c-ccccccccccc
Q 038019 288 LSFNNLTGQIPATLFNIDSLEYLFLGNNSLSGTLPDQK--SENLQKIDLSHNHLSGTFPLWVNSE--L-QMNLAVNNFKF 362 (866)
Q Consensus 288 Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~~p~~~--~~~L~~L~Ls~N~l~g~~p~~~~~~--~-~l~l~~N~~~~ 362 (866)
|++|+++|.+|..++.+++|+.|+|++|+++|.+|... .++|+.|||++|+++|.+|..+... + .|++++|+++|
T Consensus 639 Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g 718 (768)
T 3rgz_A 639 MSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSG 718 (768)
T ss_dssp CCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEE
T ss_pred CcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccc
Confidence 99999999999999999999999999999999999865 4799999999999999999887643 3 38999999998
Q ss_pred ccCCCc
Q 038019 363 DISNIS 368 (866)
Q Consensus 363 ~~~~~~ 368 (866)
.++...
T Consensus 719 ~iP~~~ 724 (768)
T 3rgz_A 719 PIPEMG 724 (768)
T ss_dssp ECCSSS
T ss_pred cCCCch
Confidence 866543
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-34 Score=328.48 Aligned_cols=299 Identities=21% Similarity=0.219 Sum_probs=211.9
Q ss_pred eeEEEEEEcccCcCCCCCcccCCCCCCCEEEccCCCCCCCC-CccccCCCCcCEEeccCCcCCCCCCccccCCCCCCEee
Q 038019 65 CHITKLRVYGLNKKGVIPEELVTLQYLTVLKIDQNFFTGPL-PSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKELTVLA 143 (866)
Q Consensus 65 ~~v~~L~l~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~-p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 143 (866)
.++++|++++|.+++..|..|.++++|++|+|++|.+.+.+ +..|.++++|++|+|++|++++..|..|+++++|++|+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 109 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT 109 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence 57999999999999999999999999999999999997555 56799999999999999999988899999999999999
Q ss_pred ccCCCCCCCCchh--hcCCCCccEEEeecCCCCCCChhh-hhcCcCCCEEEecCCCCCCCCcccccCC------------
Q 038019 144 FGTNNFSGALPPE--LGNLAKLEQLYIDSCGAGGEIPST-FAKLRNMQTLWASDNPFTGKIPDFIGNW------------ 208 (866)
Q Consensus 144 Ls~N~l~~~~p~~--l~~l~~L~~L~L~~n~l~~~~p~~-~~~l~~L~~L~L~~N~l~~~~p~~l~~l------------ 208 (866)
|++|.+++..+.. ++.+++|++|+|++|.+++..|.. |.++++|++|++++|.+++..+..+..+
T Consensus 110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~ 189 (455)
T 3v47_A 110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSS 189 (455)
T ss_dssp CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTT
T ss_pred CCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccccccc
Confidence 9999999866655 999999999999999999988876 8999999999999999998888776554
Q ss_pred ----------------------CCCCeEEccCCCCCCCCchhhcCC----------------------------------
Q 038019 209 ----------------------TKLKSLRFQGNSFQGPIPSSLSKL---------------------------------- 232 (866)
Q Consensus 209 ----------------------~~L~~L~L~~N~l~~~~p~~~~~l---------------------------------- 232 (866)
++|++|+|++|.+.+..|..+..+
T Consensus 190 n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 269 (455)
T 3v47_A 190 ITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTF 269 (455)
T ss_dssp CBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTT
T ss_pred CcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCccccc
Confidence 456666666666665444433221
Q ss_pred -----CCCCEEEccCccCCCCCchhhhcCCCCCceeccCcccccCCCcccCCCCCcCEEeeecCcCcccCCcccCCCCCC
Q 038019 233 -----ASLESLQMSDIYNVSSSLDFVMSLKNLTDLSLRNALITGTIPFGIGELQMLQILDLSFNNLTGQIPATLFNIDSL 307 (866)
Q Consensus 233 -----~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L 307 (866)
++|+.|++++|.+.......+..+++|+.|+|++|.+++..|..|..+++|+.|+|++|.+++..+..+..+++|
T Consensus 270 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 349 (455)
T 3v47_A 270 KGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKL 349 (455)
T ss_dssp GGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTC
T ss_pred ccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccC
Confidence 345555555544444444445555555555555555555555555555555555555555555555555555555
Q ss_pred cEEECcCCCCcccCCccc--CCCCCEEEeeCCCCCCccCccccc--cc-cccccccccccc
Q 038019 308 EYLFLGNNSLSGTLPDQK--SENLQKIDLSHNHLSGTFPLWVNS--EL-QMNLAVNNFKFD 363 (866)
Q Consensus 308 ~~L~L~~N~l~g~~p~~~--~~~L~~L~Ls~N~l~g~~p~~~~~--~~-~l~l~~N~~~~~ 363 (866)
++|+|++|++++..|... .++|+.|+|++|++++..+..+.. .+ .|++++|++.++
T Consensus 350 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~ 410 (455)
T 3v47_A 350 EVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 410 (455)
T ss_dssp CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccC
Confidence 555555555555444322 245555555555555433333221 12 255555555554
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-33 Score=323.24 Aligned_cols=315 Identities=20% Similarity=0.190 Sum_probs=277.5
Q ss_pred CCeeccccC----CCCCeeeEEEEEEcccCcCCCCCcccCCCCCCCEEEccCCCCCCCCCccccCCCCcCEEeccCCcCC
Q 038019 51 PAIVCNCTF----DNGATCHITKLRVYGLNKKGVIPEELVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFS 126 (866)
Q Consensus 51 ~~v~C~~~~----~~~~~~~v~~L~l~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 126 (866)
..+.|.... +.....+++.|++++|++++..+..|.++++|++|+|++|.+++..|..|.++++|++|+|++|+++
T Consensus 14 ~~v~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~ 93 (477)
T 2id5_A 14 RAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK 93 (477)
T ss_dssp TEEECCSCCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred CEEEeCCCCcCcCCCCCCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCC
Confidence 456664321 1223457899999999999999999999999999999999999988999999999999999999999
Q ss_pred CCCCccccCCCCCCEeeccCCCCCCCCchhhcCCCCccEEEeecCCCCCCChhhhhcCcCCCEEEecCCCCCCCCccccc
Q 038019 127 GPVPRELGNLKELTVLAFGTNNFSGALPPELGNLAKLEQLYIDSCGAGGEIPSTFAKLRNMQTLWASDNPFTGKIPDFIG 206 (866)
Q Consensus 127 ~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~ 206 (866)
+..+..|.++++|++|+|++|.+++..+..|..+++|++|+|++|.+++..+..|.++++|++|+|++|.+++..+..+.
T Consensus 94 ~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~ 173 (477)
T 2id5_A 94 LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALS 173 (477)
T ss_dssp SCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHT
T ss_pred ccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhc
Confidence 77777899999999999999999999999999999999999999999999999999999999999999999988778899
Q ss_pred CCCCCCeEEccCCCCCCCCchhhcCCCCCCEEEccCccCCCCCchhhhcCCCCCceeccCcccccCCCcccCCCCCcCEE
Q 038019 207 NWTKLKSLRFQGNSFQGPIPSSLSKLASLESLQMSDIYNVSSSLDFVMSLKNLTDLSLRNALITGTIPFGIGELQMLQIL 286 (866)
Q Consensus 207 ~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 286 (866)
++++|+.|+|++|.+.+..+..|..+++|+.|++++|..............+|+.|+|++|.++...+..+..+++|+.|
T Consensus 174 ~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 253 (477)
T 2id5_A 174 HLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFL 253 (477)
T ss_dssp TCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEE
T ss_pred ccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCee
Confidence 99999999999999998888899999999999999987664444444455699999999999996665689999999999
Q ss_pred eeecCcCcccCCcccCCCCCCcEEECcCCCCcccCCccc--CCCCCEEEeeCCCCCCccCccccc--cc-cccccccccc
Q 038019 287 DLSFNNLTGQIPATLFNIDSLEYLFLGNNSLSGTLPDQK--SENLQKIDLSHNHLSGTFPLWVNS--EL-QMNLAVNNFK 361 (866)
Q Consensus 287 ~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~~p~~~--~~~L~~L~Ls~N~l~g~~p~~~~~--~~-~l~l~~N~~~ 361 (866)
+|++|.+++..+..+..+++|+.|+|++|++++..|..+ .++|+.|+|++|++++..+..+.. .+ .|++++|++.
T Consensus 254 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 333 (477)
T 2id5_A 254 NLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333 (477)
T ss_dssp ECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEE
T ss_pred ECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCcc
Confidence 999999998888899999999999999999998777654 479999999999999876665542 33 4999999998
Q ss_pred cccC
Q 038019 362 FDIS 365 (866)
Q Consensus 362 ~~~~ 365 (866)
++..
T Consensus 334 c~c~ 337 (477)
T 2id5_A 334 CDCR 337 (477)
T ss_dssp CSGG
T ss_pred Cccc
Confidence 8753
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
Probab=99.98 E-value=5.4e-33 Score=331.06 Aligned_cols=293 Identities=19% Similarity=0.215 Sum_probs=253.9
Q ss_pred CcCCCCCcccCCCCCCCEEEccCCCCCCC-----------------CCcccc--CCCCcCEEeccCCcCCCCCCccccCC
Q 038019 76 NKKGVIPEELVTLQYLTVLKIDQNFFTGP-----------------LPSFIG--NLSRLMFLSFSHNDFSGPVPRELGNL 136 (866)
Q Consensus 76 ~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~-----------------~p~~l~--~l~~L~~L~Ls~N~l~~~~p~~l~~l 136 (866)
+++| +|..|+++++|++|+|++|.+++. +|..++ ++++|++|+|++|++.+.+|..|+++
T Consensus 194 ~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l 272 (636)
T 4eco_A 194 NITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKAL 272 (636)
T ss_dssp EEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTC
T ss_pred CCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcC
Confidence 3445 889999999999999999999986 999999 99999999999999999999999999
Q ss_pred CCCCEeeccCCC-CCC-CCchhhcCC------CCccEEEeecCCCCCCChh--hhhcCcCCCEEEecCCCCCCCCccccc
Q 038019 137 KELTVLAFGTNN-FSG-ALPPELGNL------AKLEQLYIDSCGAGGEIPS--TFAKLRNMQTLWASDNPFTGKIPDFIG 206 (866)
Q Consensus 137 ~~L~~L~Ls~N~-l~~-~~p~~l~~l------~~L~~L~L~~n~l~~~~p~--~~~~l~~L~~L~L~~N~l~~~~p~~l~ 206 (866)
++|++|+|++|+ +++ .+|..++.+ ++|++|+|++|+++ .+|. .|+++++|++|++++|+++|.+| .++
T Consensus 273 ~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~ 350 (636)
T 4eco_A 273 PEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFG 350 (636)
T ss_dssp SSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCE
T ss_pred CCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhC
Confidence 999999999998 998 899999887 99999999999999 7888 99999999999999999999999 899
Q ss_pred CCCCCCeEEccCCCCCCCCchhhcCCCC-CCEEEccCccCCCCCchhhhc--CCCCCceeccCcccccCCCcccC-----
Q 038019 207 NWTKLKSLRFQGNSFQGPIPSSLSKLAS-LESLQMSDIYNVSSSLDFVMS--LKNLTDLSLRNALITGTIPFGIG----- 278 (866)
Q Consensus 207 ~l~~L~~L~L~~N~l~~~~p~~~~~l~~-L~~L~l~~n~~~~~~~~~~~~--l~~L~~L~L~~n~l~~~~p~~~~----- 278 (866)
++++|++|+|++|.++ .+|..+.++++ |+.|++++|.+... +..+.. +++|+.|++++|.+++.+|..+.
T Consensus 351 ~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~~l-p~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~ 428 (636)
T 4eco_A 351 SEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLKYI-PNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPT 428 (636)
T ss_dssp EEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCSSC-CSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSS
T ss_pred CCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCccc-chhhhhcccCccCEEECcCCcCCCcchhhhcccccc
Confidence 9999999999999999 88889999999 99999999998833 344444 44899999999999999998888
Q ss_pred --CCCCcCEEeeecCcCcccCCcccCCCCCCcEEECcCCCCcccCCcccCC----------CCCEEEeeCCCCCCccCcc
Q 038019 279 --ELQMLQILDLSFNNLTGQIPATLFNIDSLEYLFLGNNSLSGTLPDQKSE----------NLQKIDLSHNHLSGTFPLW 346 (866)
Q Consensus 279 --~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~~p~~~~~----------~L~~L~Ls~N~l~g~~p~~ 346 (866)
.+++|+.|+|++|.++...+..+..+++|++|+|++|+++ .+|...+. +|+.|+|++|+++ .+|..
T Consensus 429 ~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~ 506 (636)
T 4eco_A 429 PFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDD 506 (636)
T ss_dssp CCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGG
T ss_pred cccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCC-ccChh
Confidence 8889999999999999544444556999999999999999 67765442 8999999999999 68876
Q ss_pred cc--c--cc-cccccccccccccCCCccCCCccc
Q 038019 347 VN--S--EL-QMNLAVNNFKFDISNISVFPGLNC 375 (866)
Q Consensus 347 ~~--~--~~-~l~l~~N~~~~~~~~~~~~p~l~~ 375 (866)
+. . .+ .|+|++|++++-...+..++.|..
T Consensus 507 ~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~ 540 (636)
T 4eco_A 507 FRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKG 540 (636)
T ss_dssp GSTTTCTTCCEEECCSSCCSSCCCGGGGCSSCCE
T ss_pred hhhccCCCcCEEECCCCCCCCcChhhhcCCCCCE
Confidence 54 2 23 499999999863333333444433
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=4.3e-32 Score=310.91 Aligned_cols=282 Identities=21% Similarity=0.233 Sum_probs=251.3
Q ss_pred eeeEEEEEEcccCcCCCC-CcccCCCCCCCEEEccCCCCCCCCCccccCCCCcCEEeccCCcCCCCCCcc--ccCCCCCC
Q 038019 64 TCHITKLRVYGLNKKGVI-PEELVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRE--LGNLKELT 140 (866)
Q Consensus 64 ~~~v~~L~l~~~~l~~~~-p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~--l~~l~~L~ 140 (866)
..+++.|++++|.+.+.+ +..|.++++|++|+|++|.+++..|..|+++++|++|+|++|++++.+|.. |.++++|+
T Consensus 53 l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~ 132 (455)
T 3v47_A 53 LQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLE 132 (455)
T ss_dssp CTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCC
T ss_pred CccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCC
Confidence 458999999999998776 567999999999999999999888999999999999999999999866555 99999999
Q ss_pred EeeccCCCCCCCCchh-hcCCCCccEEEeecCCCCCCChhhhhcC----------------------------------c
Q 038019 141 VLAFGTNNFSGALPPE-LGNLAKLEQLYIDSCGAGGEIPSTFAKL----------------------------------R 185 (866)
Q Consensus 141 ~L~Ls~N~l~~~~p~~-l~~l~~L~~L~L~~n~l~~~~p~~~~~l----------------------------------~ 185 (866)
+|+|++|.+++..|.. +.++++|++|+|++|.+++..+..+..+ +
T Consensus 133 ~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~ 212 (455)
T 3v47_A 133 MLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNT 212 (455)
T ss_dssp EEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTC
T ss_pred EEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccc
Confidence 9999999999888876 8999999999999999998888776654 6
Q ss_pred CCCEEEecCCCCCCCCcccccC---------------------------------------CCCCCeEEccCCCCCCCCc
Q 038019 186 NMQTLWASDNPFTGKIPDFIGN---------------------------------------WTKLKSLRFQGNSFQGPIP 226 (866)
Q Consensus 186 ~L~~L~L~~N~l~~~~p~~l~~---------------------------------------l~~L~~L~L~~N~l~~~~p 226 (866)
+|++|++++|.+++.+|..+.. .++|+.|++++|.+.+.+|
T Consensus 213 ~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 292 (455)
T 3v47_A 213 SITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLK 292 (455)
T ss_dssp EEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECT
T ss_pred eeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccch
Confidence 7999999999887655544322 2589999999999999999
Q ss_pred hhhcCCCCCCEEEccCccCCCCCchhhhcCCCCCceeccCcccccCCCcccCCCCCcCEEeeecCcCcccCCcccCCCCC
Q 038019 227 SSLSKLASLESLQMSDIYNVSSSLDFVMSLKNLTDLSLRNALITGTIPFGIGELQMLQILDLSFNNLTGQIPATLFNIDS 306 (866)
Q Consensus 227 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~ 306 (866)
..|.++++|+.|++++|.+.......+..+++|+.|+|++|.+++..+..+..+++|+.|+|++|++++..|..+..+++
T Consensus 293 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 372 (455)
T 3v47_A 293 SVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPN 372 (455)
T ss_dssp TTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTT
T ss_pred hhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhcccccc
Confidence 99999999999999999998877788999999999999999999888999999999999999999999999999999999
Q ss_pred CcEEECcCCCCcccCCcc--cCCCCCEEEeeCCCCCCccCc
Q 038019 307 LEYLFLGNNSLSGTLPDQ--KSENLQKIDLSHNHLSGTFPL 345 (866)
Q Consensus 307 L~~L~L~~N~l~g~~p~~--~~~~L~~L~Ls~N~l~g~~p~ 345 (866)
|++|+|++|++++..+.. ..++|+.|+|++|++++..|.
T Consensus 373 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 413 (455)
T 3v47_A 373 LKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 413 (455)
T ss_dssp CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred ccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCc
Confidence 999999999999755533 357999999999999999884
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=5.4e-31 Score=313.13 Aligned_cols=298 Identities=20% Similarity=0.187 Sum_probs=269.7
Q ss_pred eEEEEEEcccCcCCCCCcccCCCCCCCEEEccCCCCCCCCCccccCCCCcCEEeccCCcCCCCCCccccCCCCCCEeecc
Q 038019 66 HITKLRVYGLNKKGVIPEELVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKELTVLAFG 145 (866)
Q Consensus 66 ~v~~L~l~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls 145 (866)
+++.|++.+|.+++..+..|.++++|++|+|++|.++ .+|..+.++++|++|+|++|.+++..|..+.++++|++|+++
T Consensus 255 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 333 (606)
T 3t6q_A 255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIK 333 (606)
T ss_dssp EEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECC
T ss_pred ceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECC
Confidence 7999999999999988888999999999999999998 788899999999999999999998888999999999999999
Q ss_pred CCCCCCCCch-hhcCCCCccEEEeecCCCCCCC--hhhhhcCcCCCEEEecCCCCCCCCcccccCCCCCCeEEccCCCCC
Q 038019 146 TNNFSGALPP-ELGNLAKLEQLYIDSCGAGGEI--PSTFAKLRNMQTLWASDNPFTGKIPDFIGNWTKLKSLRFQGNSFQ 222 (866)
Q Consensus 146 ~N~l~~~~p~-~l~~l~~L~~L~L~~n~l~~~~--p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~ 222 (866)
+|.+.+.+|. .+..+++|++|++++|.+++.. +..+..+++|++|++++|.+++..|..+..+++|+.|++++|.+.
T Consensus 334 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 413 (606)
T 3t6q_A 334 GNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLK 413 (606)
T ss_dssp SCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEE
T ss_pred CCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCC
Confidence 9999877765 4999999999999999998876 788999999999999999999888999999999999999999999
Q ss_pred CCCch-hhcCCCCCCEEEccCccCCCCCchhhhcCCCCCceeccCcccccC---CCcccCCCCCcCEEeeecCcCcccCC
Q 038019 223 GPIPS-SLSKLASLESLQMSDIYNVSSSLDFVMSLKNLTDLSLRNALITGT---IPFGIGELQMLQILDLSFNNLTGQIP 298 (866)
Q Consensus 223 ~~~p~-~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~---~p~~~~~l~~L~~L~Ls~N~l~~~~p 298 (866)
+..+. .+.++++|+.|++++|.+.......+..+++|++|+|++|.+++. .+..+..+++|+.|++++|.+++..|
T Consensus 414 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 493 (606)
T 3t6q_A 414 VKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQ 493 (606)
T ss_dssp CCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECT
T ss_pred CcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccCh
Confidence 87654 489999999999999999887778889999999999999999873 33568999999999999999999999
Q ss_pred cccCCCCCCcEEECcCCCCcccCCccc--CCCCCEEEeeCCCCCCccCccccc--cc-cccccccccccccC
Q 038019 299 ATLFNIDSLEYLFLGNNSLSGTLPDQK--SENLQKIDLSHNHLSGTFPLWVNS--EL-QMNLAVNNFKFDIS 365 (866)
Q Consensus 299 ~~l~~l~~L~~L~L~~N~l~g~~p~~~--~~~L~~L~Ls~N~l~g~~p~~~~~--~~-~l~l~~N~~~~~~~ 365 (866)
..+..+++|++|+|++|++++..|... .+.| .|+|++|++++..|..+.. .+ .+++++|++.|++.
T Consensus 494 ~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 564 (606)
T 3t6q_A 494 HAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCS 564 (606)
T ss_dssp TTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred hhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence 999999999999999999998877654 3688 9999999999888876553 23 49999999988743
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=5.5e-31 Score=313.09 Aligned_cols=298 Identities=19% Similarity=0.155 Sum_probs=193.2
Q ss_pred eeEEEEEEcccCcCCCCCcccCCCCCCCEEEccCCCCCCCCCccccCCCCcCEEeccCCcCCCCCCccccCCCCCCEeec
Q 038019 65 CHITKLRVYGLNKKGVIPEELVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKELTVLAF 144 (866)
Q Consensus 65 ~~v~~L~l~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 144 (866)
.+++.|++++|.+++..+..|.++++|++|+|++|.+++..|..|.++++|++|+|++|.+++..|..|+++++|++|+|
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 111 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVA 111 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEEC
T ss_pred CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEc
Confidence 45666666666666666666666666666666666666655666666666666666666666655666666666666666
Q ss_pred cCCCCCCCCchhhcCCCCccEEEeecCCCCC-CChhhhhcCcCCCEEEecCCCCCCCCccc-------------------
Q 038019 145 GTNNFSGALPPELGNLAKLEQLYIDSCGAGG-EIPSTFAKLRNMQTLWASDNPFTGKIPDF------------------- 204 (866)
Q Consensus 145 s~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~-~~p~~~~~l~~L~~L~L~~N~l~~~~p~~------------------- 204 (866)
++|.+++..+..++++++|++|+|++|.+++ .+|..|+++++|++|++++|++++..+..
T Consensus 112 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n 191 (606)
T 3vq2_A 112 VETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLN 191 (606)
T ss_dssp TTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTC
T ss_pred cCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCC
Confidence 6666665555556666666666666666654 34556666666666666555544322211
Q ss_pred --------------------------------------------------------------------------------
Q 038019 205 -------------------------------------------------------------------------------- 204 (866)
Q Consensus 205 -------------------------------------------------------------------------------- 204 (866)
T Consensus 192 ~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~ 271 (606)
T 3vq2_A 192 PIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYT 271 (606)
T ss_dssp CCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCC
T ss_pred CcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheecccc
Confidence
Q ss_pred --------------------------------------------------------------------------ccCCCC
Q 038019 205 --------------------------------------------------------------------------IGNWTK 210 (866)
Q Consensus 205 --------------------------------------------------------------------------l~~l~~ 210 (866)
+..+++
T Consensus 272 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l~~lp~~~l~~L~~L~l~~n~~~~~~~~~~l~~ 351 (606)
T 3vq2_A 272 NDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISFKKVALPS 351 (606)
T ss_dssp TTCCGGGGSCGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCCSSCCCCCCSSCCEEEEESCSSCEECCCCCCTT
T ss_pred ccccccccccccCCCCCEEEecCccchhhhhccccccCCEEEcccccCcccccCCCCccceeeccCCcCccchhhccCCC
Confidence 112344
Q ss_pred CCeEEccCCCCCCC--CchhhcCCCCCCEEEccCccCCCCCchhhhcCCCCCceeccCcccccCCC-cccCCCCCcCEEe
Q 038019 211 LKSLRFQGNSFQGP--IPSSLSKLASLESLQMSDIYNVSSSLDFVMSLKNLTDLSLRNALITGTIP-FGIGELQMLQILD 287 (866)
Q Consensus 211 L~~L~L~~N~l~~~--~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~ 287 (866)
|++|++++|.+++. ++..+..+++|+.|++++|.+.... ..+..+++|+.|++++|.+.+..+ ..+..+++|+.|+
T Consensus 352 L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ 430 (606)
T 3vq2_A 352 LSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMS-ANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLD 430 (606)
T ss_dssp CCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEEC-CCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEE
T ss_pred CCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccch-hhccCCCCCCeeECCCCccCCccChhhhhccccCCEEE
Confidence 55555555555543 3667778888888888888765433 556677778888888888777766 5677777788888
Q ss_pred eecCcCcccCCcccCCCCCCcEEECcCCCCccc-CCccc--CCCCCEEEeeCCCCCCccCccccc--cc-cccccccccc
Q 038019 288 LSFNNLTGQIPATLFNIDSLEYLFLGNNSLSGT-LPDQK--SENLQKIDLSHNHLSGTFPLWVNS--EL-QMNLAVNNFK 361 (866)
Q Consensus 288 Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~-~p~~~--~~~L~~L~Ls~N~l~g~~p~~~~~--~~-~l~l~~N~~~ 361 (866)
+++|.+++..|..+..+++|++|++++|++++. +|... .++|+.|+|++|++++..|.++.. .+ .|++++|+++
T Consensus 431 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 510 (606)
T 3vq2_A 431 ISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLL 510 (606)
T ss_dssp CTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred CcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCC
Confidence 888877777777777777777777777777763 44432 367777777777777776665542 22 3777777776
Q ss_pred cc
Q 038019 362 FD 363 (866)
Q Consensus 362 ~~ 363 (866)
+.
T Consensus 511 ~~ 512 (606)
T 3vq2_A 511 FL 512 (606)
T ss_dssp CE
T ss_pred Cc
Confidence 54
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=4.3e-31 Score=307.98 Aligned_cols=304 Identities=19% Similarity=0.200 Sum_probs=238.2
Q ss_pred eeEEEEEEcccCcCCCCCcccCCCCCCCEEEccCCCCCCCCCccccCCCCcCEEeccCCcCCCCCCccccCCCCCCEeec
Q 038019 65 CHITKLRVYGLNKKGVIPEELVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKELTVLAF 144 (866)
Q Consensus 65 ~~v~~L~l~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 144 (866)
.+++.|++++|.+++..|..|.++++|++|+|++|++++..|..|+++++|++|+|++|+|+ .+|.. .+++|++|+|
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L 97 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDL 97 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEEC
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEec
Confidence 47899999999999888889999999999999999999888899999999999999999998 56666 8999999999
Q ss_pred cCCCCCC-CCchhhcCCCCccEEEeecCCCCCCChhhhhcCcCC--CEEEecCCCC--CCCCcccccCCC----------
Q 038019 145 GTNNFSG-ALPPELGNLAKLEQLYIDSCGAGGEIPSTFAKLRNM--QTLWASDNPF--TGKIPDFIGNWT---------- 209 (866)
Q Consensus 145 s~N~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L--~~L~L~~N~l--~~~~p~~l~~l~---------- 209 (866)
++|.+++ .+|..|+++++|++|+|++|.+++ ..+..+++| ++|++++|.+ ++..|..+..+.
T Consensus 98 ~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~ 174 (520)
T 2z7x_B 98 SFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPT 174 (520)
T ss_dssp CSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCS
T ss_pred cCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccccccccccccccccccceEEEEecc
Confidence 9999987 478899999999999999999876 456777777 9999998888 666666655533
Q ss_pred -------------------------------------------------------------------------CCCeEEc
Q 038019 210 -------------------------------------------------------------------------KLKSLRF 216 (866)
Q Consensus 210 -------------------------------------------------------------------------~L~~L~L 216 (866)
+|++|++
T Consensus 175 n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l 254 (520)
T 2z7x_B 175 NKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSI 254 (520)
T ss_dssp SSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEE
T ss_pred CcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEe
Confidence 6777777
Q ss_pred cCCCCCCCCchhh-----cCCCCCCEEEccCccCCCCCch-------------------------hhhcCCCCCceeccC
Q 038019 217 QGNSFQGPIPSSL-----SKLASLESLQMSDIYNVSSSLD-------------------------FVMSLKNLTDLSLRN 266 (866)
Q Consensus 217 ~~N~l~~~~p~~~-----~~l~~L~~L~l~~n~~~~~~~~-------------------------~~~~l~~L~~L~L~~ 266 (866)
++|.+.|.+|..+ .++++|+.++++.|.+ ..... ....+++|++|++++
T Consensus 255 ~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~ 333 (520)
T 2z7x_B 255 SNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSN 333 (520)
T ss_dssp EEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-CSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCS
T ss_pred ecccccCccccchhhcccccCceeEeccccccce-ecchhhhhcccccCceeEEEcCCCccccccchhhCCcccEEEeEC
Confidence 7777777777776 6666666665555544 11100 115678889999999
Q ss_pred cccccCCCcccCCCCCcCEEeeecCcCcc--cCCcccCCCCCCcEEECcCCCCcccCCcc---cCCCCCEEEeeCCCCCC
Q 038019 267 ALITGTIPFGIGELQMLQILDLSFNNLTG--QIPATLFNIDSLEYLFLGNNSLSGTLPDQ---KSENLQKIDLSHNHLSG 341 (866)
Q Consensus 267 n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~--~~p~~l~~l~~L~~L~L~~N~l~g~~p~~---~~~~L~~L~Ls~N~l~g 341 (866)
|.+++.+|..++.+++|+.|++++|++++ .+|..+..+++|++|+|++|++++.+|.. ..++|+.|++++|++++
T Consensus 334 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~ 413 (520)
T 2z7x_B 334 NLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTD 413 (520)
T ss_dssp SCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCG
T ss_pred CccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCc
Confidence 99988888888888999999999999886 56677888889999999999988766643 23688888999988888
Q ss_pred ccCcccccccc-ccccccccccccCCCccCCCccc
Q 038019 342 TFPLWVNSELQ-MNLAVNNFKFDISNISVFPGLNC 375 (866)
Q Consensus 342 ~~p~~~~~~~~-l~l~~N~~~~~~~~~~~~p~l~~ 375 (866)
.+|..+...++ |++++|.++.-...+..++.|..
T Consensus 414 ~~~~~l~~~L~~L~Ls~N~l~~ip~~~~~l~~L~~ 448 (520)
T 2z7x_B 414 TIFRCLPPRIKVLDLHSNKIKSIPKQVVKLEALQE 448 (520)
T ss_dssp GGGGSCCTTCCEEECCSSCCCCCCGGGGGCTTCCE
T ss_pred chhhhhcccCCEEECCCCcccccchhhhcCCCCCE
Confidence 88877754444 88888888732222333444443
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=7.2e-31 Score=302.63 Aligned_cols=281 Identities=20% Similarity=0.137 Sum_probs=261.2
Q ss_pred eeeEEEEEEcccCcCCCCCcccCCCCCCCEEEccCCCCCCCCCccccCCCCcCEEeccCCcCCCCCCccccCCCCCCEee
Q 038019 64 TCHITKLRVYGLNKKGVIPEELVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKELTVLA 143 (866)
Q Consensus 64 ~~~v~~L~l~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 143 (866)
..+++.|+|++|.+++..|..|.++++|++|+|++|.+++..+..|.++++|++|+|++|++++..|..|.++++|++|+
T Consensus 55 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 134 (477)
T 2id5_A 55 FPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLE 134 (477)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEE
Confidence 45899999999999999999999999999999999999977777899999999999999999999999999999999999
Q ss_pred ccCCCCCCCCchhhcCCCCccEEEeecCCCCCCChhhhhcCcCCCEEEecCCCCCCCCcccccCCCCCCeEEccCCCCCC
Q 038019 144 FGTNNFSGALPPELGNLAKLEQLYIDSCGAGGEIPSTFAKLRNMQTLWASDNPFTGKIPDFIGNWTKLKSLRFQGNSFQG 223 (866)
Q Consensus 144 Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~ 223 (866)
|++|.+++..+..|.++++|++|+|++|.+++..+..|..+++|+.|+|++|.+++..+..|..+++|+.|++++|.+.+
T Consensus 135 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~ 214 (477)
T 2id5_A 135 VGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLD 214 (477)
T ss_dssp ECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCC
T ss_pred CCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCcccc
Confidence 99999999889999999999999999999999888999999999999999999998888899999999999999999888
Q ss_pred CCchhhcCCCCCCEEEccCccCCCCCchhhhcCCCCCceeccCcccccCCCcccCCCCCcCEEeeecCcCcccCCcccCC
Q 038019 224 PIPSSLSKLASLESLQMSDIYNVSSSLDFVMSLKNLTDLSLRNALITGTIPFGIGELQMLQILDLSFNNLTGQIPATLFN 303 (866)
Q Consensus 224 ~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~ 303 (866)
.++..+....+|+.|++++|.+.......+..+++|+.|+|++|.+++..+..|..+++|+.|+|++|++++..|..+..
T Consensus 215 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 294 (477)
T 2id5_A 215 TMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRG 294 (477)
T ss_dssp EECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTT
T ss_pred ccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcC
Confidence 88887777789999999999998877778999999999999999999888888999999999999999999999999999
Q ss_pred CCCCcEEECcCCCCcccCCccc--CCCCCEEEeeCCCCCCccC
Q 038019 304 IDSLEYLFLGNNSLSGTLPDQK--SENLQKIDLSHNHLSGTFP 344 (866)
Q Consensus 304 l~~L~~L~L~~N~l~g~~p~~~--~~~L~~L~Ls~N~l~g~~p 344 (866)
+++|++|+|++|++++..+..+ .++|+.|+|++|++++..+
T Consensus 295 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~ 337 (477)
T 2id5_A 295 LNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCR 337 (477)
T ss_dssp CTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGG
T ss_pred cccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccc
Confidence 9999999999999997555432 4789999999999987654
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
Probab=99.97 E-value=2.7e-32 Score=296.17 Aligned_cols=248 Identities=25% Similarity=0.381 Sum_probs=202.4
Q ss_pred CCCCEEEccCCCCCC--CCCccccCCCCcCEEeccC-CcCCCCCCccccCCCCCCEeeccCCCCCCCCchhhcCCCCccE
Q 038019 89 QYLTVLKIDQNFFTG--PLPSFIGNLSRLMFLSFSH-NDFSGPVPRELGNLKELTVLAFGTNNFSGALPPELGNLAKLEQ 165 (866)
Q Consensus 89 ~~L~~L~Ls~n~l~~--~~p~~l~~l~~L~~L~Ls~-N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~ 165 (866)
.+++.|+|++|.+++ .+|..|.++++|++|+|++ |.+.+.+|..|+++++|++|+|++|.+++.+|..|.++++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 478999999999998 8999999999999999995 9999999999999999999999999999999999999999999
Q ss_pred EEeecCCCCCCChhhhhcCcCCCEEEecCCCCCCCCcccccCCC-CCCeEEccCCCCCCCCchhhcCCCCCCEEEccCcc
Q 038019 166 LYIDSCGAGGEIPSTFAKLRNMQTLWASDNPFTGKIPDFIGNWT-KLKSLRFQGNSFQGPIPSSLSKLASLESLQMSDIY 244 (866)
Q Consensus 166 L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~-~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~n~ 244 (866)
|+|++|.+++.+|..|..+++|++|+|++|++++.+|..+..++ +|++|+|++|.+++.+|..+..++ |+.|++++|.
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~ 208 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM 208 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc
Confidence 99999999999999999999999999999999989999999998 999999999999988888888876 7777777776
Q ss_pred CCCCCchhhhcCCCCCceeccCcccccCCCcccCCCCCcCEEeeecCcCcccCCcccCCCCCCcEEECcCCCCcccCCcc
Q 038019 245 NVSSSLDFVMSLKNLTDLSLRNALITGTIPFGIGELQMLQILDLSFNNLTGQIPATLFNIDSLEYLFLGNNSLSGTLPDQ 324 (866)
Q Consensus 245 ~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~~p~~ 324 (866)
+.......+..+++|+.|+|++|.+++.+|. +..+++|+.|+|++|++++.+|..+..+++|++|+|++|+++|.+|..
T Consensus 209 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~ 287 (313)
T 1ogq_A 209 LEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG 287 (313)
T ss_dssp EEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS
T ss_pred ccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC
Confidence 6655555666667777777777776655554 566666777777777776666666666666666666666666666553
Q ss_pred c-CCCCCEEEeeCCC
Q 038019 325 K-SENLQKIDLSHNH 338 (866)
Q Consensus 325 ~-~~~L~~L~Ls~N~ 338 (866)
. .++|+.|++++|+
T Consensus 288 ~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 288 GNLQRFDVSAYANNK 302 (313)
T ss_dssp TTGGGSCGGGTCSSS
T ss_pred ccccccChHHhcCCC
Confidence 1 2445555555554
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=8.8e-31 Score=310.12 Aligned_cols=283 Identities=20% Similarity=0.143 Sum_probs=203.5
Q ss_pred eeEEEEEEcccCcCCCCCcccCCCCCCCEEEccCCCCCCCCCccccCCCCcCEEeccCCcCCCCCCccccCCCCCCEeec
Q 038019 65 CHITKLRVYGLNKKGVIPEELVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKELTVLAF 144 (866)
Q Consensus 65 ~~v~~L~l~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 144 (866)
.+++.|++.++.+....+..|..+++|++|+|++|.+++..|..|+++++|++|+|++|.+++..|..|+++++|++|+|
T Consensus 51 ~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 130 (597)
T 3oja_B 51 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 130 (597)
T ss_dssp CCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEe
Confidence 56788999999888777777889999999999999999888889999999999999999999988889999999999999
Q ss_pred cCCCCCCCCchhhcCCCCccEEEeecCCCCCCChhhhhcCcCCCEEEecCCCCCCCCcccccCCCCCCeEEccCCCCCCC
Q 038019 145 GTNNFSGALPPELGNLAKLEQLYIDSCGAGGEIPSTFAKLRNMQTLWASDNPFTGKIPDFIGNWTKLKSLRFQGNSFQGP 224 (866)
Q Consensus 145 s~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ 224 (866)
++|.+++..+..|+++++|++|+|++|.+++..|..|..+++|++|+|++|.+++.. +..+++|+.|++++|.+.+
T Consensus 131 ~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~~- 206 (597)
T 3oja_B 131 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLST- 206 (597)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCCSE-
T ss_pred eCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCcccc-
Confidence 999999776667899999999999999999999999999999999999999998653 4556788888888887764
Q ss_pred CchhhcCCCCCCEEEccCccCCCCCchhhhcCCCCCceeccCcccccCCCcccCCCCCcCEEeeecCcCcccCCcccCCC
Q 038019 225 IPSSLSKLASLESLQMSDIYNVSSSLDFVMSLKNLTDLSLRNALITGTIPFGIGELQMLQILDLSFNNLTGQIPATLFNI 304 (866)
Q Consensus 225 ~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l 304 (866)
+....+|+.|++++|.+...... ..++|+.|+|++|.+++. ..+..+++|+.|+|++|.+++..|..+..+
T Consensus 207 ----l~~~~~L~~L~ls~n~l~~~~~~---~~~~L~~L~L~~n~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l 277 (597)
T 3oja_B 207 ----LAIPIAVEELDASHNSINVVRGP---VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKM 277 (597)
T ss_dssp ----EECCTTCSEEECCSSCCCEEECS---CCSCCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTC
T ss_pred ----ccCCchhheeeccCCcccccccc---cCCCCCEEECCCCCCCCC--hhhccCCCCCEEECCCCccCCCCHHHhcCc
Confidence 23344566666666655422211 124555666666655542 345555566666666666655555555556
Q ss_pred CCCcEEECcCCCCcccCCcc-cCCCCCEEEeeCCCCCCccCccccc--cc-cccccccccc
Q 038019 305 DSLEYLFLGNNSLSGTLPDQ-KSENLQKIDLSHNHLSGTFPLWVNS--EL-QMNLAVNNFK 361 (866)
Q Consensus 305 ~~L~~L~L~~N~l~g~~p~~-~~~~L~~L~Ls~N~l~g~~p~~~~~--~~-~l~l~~N~~~ 361 (866)
++|+.|+|++|.+++..+.. .+++|+.|+|++|+++ .+|.++.. .+ .|+|++|.+.
T Consensus 278 ~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~ 337 (597)
T 3oja_B 278 QRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV 337 (597)
T ss_dssp SSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCC
T ss_pred cCCCEEECCCCCCCCCCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCC
Confidence 66666666666555432111 1345566666666555 33433321 12 2555555554
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=5.7e-31 Score=309.09 Aligned_cols=297 Identities=20% Similarity=0.208 Sum_probs=219.0
Q ss_pred eeEEEEEEcccCcCCCCCcccCCCCCCCEEEccCCCCCCCCCccccCCCCcCEEeccCCcCCCCCCccccCCCCCCEeec
Q 038019 65 CHITKLRVYGLNKKGVIPEELVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKELTVLAF 144 (866)
Q Consensus 65 ~~v~~L~l~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 144 (866)
.+++.|++++|++++..|..|.++++|++|+|++|++++..|..|+++++|++|+|++|++++..|..|+++++|++|+|
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 105 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL 105 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEEC
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEEC
Confidence 57899999999999888888999999999999999999888888999999999999999999877777999999999999
Q ss_pred cCCCCCC-CCchhhcCCCCccEEEeecCCCCCCC-hhhhhcCcCCCEEEecCCCCCCCCcccccC---------------
Q 038019 145 GTNNFSG-ALPPELGNLAKLEQLYIDSCGAGGEI-PSTFAKLRNMQTLWASDNPFTGKIPDFIGN--------------- 207 (866)
Q Consensus 145 s~N~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~-p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~--------------- 207 (866)
++|.+++ ..|..++++++|++|+|++|.+.+.+ +..|.++++|++|++++|.+++.+|..++.
T Consensus 106 s~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~ 185 (549)
T 2z81_A 106 MGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA 185 (549)
T ss_dssp TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST
T ss_pred CCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCccc
Confidence 9999886 35678888999999999988854444 467888888999999888888777766654
Q ss_pred ---------CCCCCeEEccCCCCCCCC--chh-----------------------------hcC----------------
Q 038019 208 ---------WTKLKSLRFQGNSFQGPI--PSS-----------------------------LSK---------------- 231 (866)
Q Consensus 208 ---------l~~L~~L~L~~N~l~~~~--p~~-----------------------------~~~---------------- 231 (866)
+++|++|++++|++++.. +.. +..
T Consensus 186 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~ 265 (549)
T 2z81_A 186 FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNG 265 (549)
T ss_dssp THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEEC
T ss_pred ccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccc
Confidence 455666666666665421 000 000
Q ss_pred -------------------------------------------CCCCCEEEccCccCCCCCchhhhcCCCCCceeccCcc
Q 038019 232 -------------------------------------------LASLESLQMSDIYNVSSSLDFVMSLKNLTDLSLRNAL 268 (866)
Q Consensus 232 -------------------------------------------l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~ 268 (866)
+.+|+.|++++|.+...+...+..+++|+.|+|++|.
T Consensus 266 ~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~ 345 (549)
T 2z81_A 266 LGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENL 345 (549)
T ss_dssp CSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSC
T ss_pred cccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEccCCc
Confidence 1223333333333332222333568889999999999
Q ss_pred cccCCC---cccCCCCCcCEEeeecCcCcccCC--cccCCCCCCcEEECcCCCCcccCCccc--CCCCCEEEeeCCCCCC
Q 038019 269 ITGTIP---FGIGELQMLQILDLSFNNLTGQIP--ATLFNIDSLEYLFLGNNSLSGTLPDQK--SENLQKIDLSHNHLSG 341 (866)
Q Consensus 269 l~~~~p---~~~~~l~~L~~L~Ls~N~l~~~~p--~~l~~l~~L~~L~L~~N~l~g~~p~~~--~~~L~~L~Ls~N~l~g 341 (866)
+++.+| ..++.+++|+.|++++|++++..+ ..+..+++|++|+|++|+++ .+|... .++|+.|++++|+++.
T Consensus 346 l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~ 424 (549)
T 2z81_A 346 MVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRV 424 (549)
T ss_dssp CCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSC
T ss_pred cccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCccc
Confidence 887664 347788889999999998876432 45778888999999999888 455432 3678888888888874
Q ss_pred ccCccccccc-cccccccccccc
Q 038019 342 TFPLWVNSEL-QMNLAVNNFKFD 363 (866)
Q Consensus 342 ~~p~~~~~~~-~l~l~~N~~~~~ 363 (866)
+|..+...+ .|++++|++++.
T Consensus 425 -l~~~~~~~L~~L~Ls~N~l~~~ 446 (549)
T 2z81_A 425 -VKTCIPQTLEVLDVSNNNLDSF 446 (549)
T ss_dssp -CCTTSCTTCSEEECCSSCCSCC
T ss_pred -ccchhcCCceEEECCCCChhhh
Confidence 333333333 388888887754
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.97 E-value=5.5e-31 Score=319.31 Aligned_cols=289 Identities=22% Similarity=0.312 Sum_probs=250.1
Q ss_pred eeeEEEEEEcccCcCCCCCcccCCCCCCCEEEccCCC-CCC-CCCccccCCC-------CcCEEeccCCcCCCCCCc--c
Q 038019 64 TCHITKLRVYGLNKKGVIPEELVTLQYLTVLKIDQNF-FTG-PLPSFIGNLS-------RLMFLSFSHNDFSGPVPR--E 132 (866)
Q Consensus 64 ~~~v~~L~l~~~~l~~~~p~~l~~l~~L~~L~Ls~n~-l~~-~~p~~l~~l~-------~L~~L~Ls~N~l~~~~p~--~ 132 (866)
..+++.|+|++|++.+.+|..|.++++|++|+|++|+ +++ .+|..+++++ +|++|+|++|+++ .+|. .
T Consensus 490 L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~ 568 (876)
T 4ecn_A 490 LKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASAS 568 (876)
T ss_dssp CTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHH
T ss_pred CCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhh
Confidence 4679999999999999999999999999999999998 998 7888776665 9999999999999 8998 9
Q ss_pred ccCCCCCCEeeccCCCCCCCCchhhcCCCCccEEEeecCCCCCCChhhhhcCcC-CCEEEecCCCCCCCCcccccCCCC-
Q 038019 133 LGNLKELTVLAFGTNNFSGALPPELGNLAKLEQLYIDSCGAGGEIPSTFAKLRN-MQTLWASDNPFTGKIPDFIGNWTK- 210 (866)
Q Consensus 133 l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~-L~~L~L~~N~l~~~~p~~l~~l~~- 210 (866)
|+++++|++|+|++|.++ .+| .|+.+++|+.|+|++|.++ .+|..+.++++ |++|+|++|.++ .+|..+..++.
T Consensus 569 l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~ 644 (876)
T 4ecn_A 569 LQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVY 644 (876)
T ss_dssp HTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSS
T ss_pred hhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccC
Confidence 999999999999999999 788 9999999999999999999 88989999999 999999999999 78888877654
Q ss_pred -CCeEEccCCCCCCCCchh---hc--CCCCCCEEEccCccCCCCCchhhhcCCCCCceeccCcccccCCCcccCC-----
Q 038019 211 -LKSLRFQGNSFQGPIPSS---LS--KLASLESLQMSDIYNVSSSLDFVMSLKNLTDLSLRNALITGTIPFGIGE----- 279 (866)
Q Consensus 211 -L~~L~L~~N~l~~~~p~~---~~--~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~----- 279 (866)
|+.|+|++|.+.+.+|.. +. .+++|+.|+|++|.+.......+..+++|+.|+|++|.++ .+|..+..
T Consensus 645 ~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~ 723 (876)
T 4ecn_A 645 VMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGN 723 (876)
T ss_dssp CEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSC
T ss_pred CCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhcccccc
Confidence 999999999999876532 22 3458999999999988666666778999999999999998 55554333
Q ss_pred ---CCCcCEEeeecCcCcccCCcccC--CCCCCcEEECcCCCCcccCCccc--CCCCCEEEeeC------CCCCCccCcc
Q 038019 280 ---LQMLQILDLSFNNLTGQIPATLF--NIDSLEYLFLGNNSLSGTLPDQK--SENLQKIDLSH------NHLSGTFPLW 346 (866)
Q Consensus 280 ---l~~L~~L~Ls~N~l~~~~p~~l~--~l~~L~~L~L~~N~l~g~~p~~~--~~~L~~L~Ls~------N~l~g~~p~~ 346 (866)
+++|+.|+|++|+++ .+|..+. .+++|+.|+|++|++++ +|... .++|+.|+|++ |++.+.+|.+
T Consensus 724 l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~ 801 (876)
T 4ecn_A 724 YKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTG 801 (876)
T ss_dssp CTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTT
T ss_pred ccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHH
Confidence 238999999999998 7888887 89999999999999998 66543 47899999976 8888999987
Q ss_pred cccc--c-ccccccccc
Q 038019 347 VNSE--L-QMNLAVNNF 360 (866)
Q Consensus 347 ~~~~--~-~l~l~~N~~ 360 (866)
+... + .|+|++|.+
T Consensus 802 l~~L~~L~~L~Ls~N~L 818 (876)
T 4ecn_A 802 ITTCPSLIQLQIGSNDI 818 (876)
T ss_dssp GGGCSSCCEEECCSSCC
T ss_pred HhcCCCCCEEECCCCCC
Confidence 7642 3 389999998
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-30 Score=310.55 Aligned_cols=297 Identities=22% Similarity=0.186 Sum_probs=221.4
Q ss_pred eeeEEEEEEcccCcCCCCCcccCCCCCCCEEEccCCCCCCCCCccccCCCCcCEEeccCCcCCCCCCccccCCCCCCEee
Q 038019 64 TCHITKLRVYGLNKKGVIPEELVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKELTVLA 143 (866)
Q Consensus 64 ~~~v~~L~l~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 143 (866)
..+++.|++++|.+++..|..|.++++|++|+|++|.+++..|..|.++++|++|+|++|++++..|..|+++++|++|+
T Consensus 32 ~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 111 (606)
T 3t6q_A 32 PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLF 111 (606)
T ss_dssp CTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEE
T ss_pred CCcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEee
Confidence 35789999999999999999999999999999999999998899999999999999999999998999999999999999
Q ss_pred ccCCCCCCCCchhhcCCCCccEEEeecCCCCCCChhhhhcCcCCCEEEecCCCCCCCCcccccCCCCCC--eEEccCCCC
Q 038019 144 FGTNNFSGALPPELGNLAKLEQLYIDSCGAGGEIPSTFAKLRNMQTLWASDNPFTGKIPDFIGNWTKLK--SLRFQGNSF 221 (866)
Q Consensus 144 Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~--~L~L~~N~l 221 (866)
|++|.+++..+..++++++|++|+|++|.+++.....+..+++|++|++++|.+++..+..++.+++|+ .|++++|.+
T Consensus 112 L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l 191 (606)
T 3t6q_A 112 FIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDI 191 (606)
T ss_dssp CTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCC
T ss_pred ccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCcc
Confidence 999999987788899999999999999999986544555699999999999999988899999999999 899999999
Q ss_pred CCCCchhhcCCC----------------------------------------------------CCCEEEccCccCCCCC
Q 038019 222 QGPIPSSLSKLA----------------------------------------------------SLESLQMSDIYNVSSS 249 (866)
Q Consensus 222 ~~~~p~~~~~l~----------------------------------------------------~L~~L~l~~n~~~~~~ 249 (866)
.+..|..+.. . +|+.|++++|.+....
T Consensus 192 ~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~ 270 (606)
T 3t6q_A 192 AGIEPGAFDS-AVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNIS 270 (606)
T ss_dssp CEECTTTTTT-CEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCC
T ss_pred CccChhHhhh-ccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccC
Confidence 9877766543 3 3444555555444444
Q ss_pred chhhhcCCCCCceeccCcccccCCCcccCCCCCcCEEeeecCcCcccCCcccCCCCCCcEEECcCCCCcccCCcc---cC
Q 038019 250 LDFVMSLKNLTDLSLRNALITGTIPFGIGELQMLQILDLSFNNLTGQIPATLFNIDSLEYLFLGNNSLSGTLPDQ---KS 326 (866)
Q Consensus 250 ~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~~p~~---~~ 326 (866)
...+..+++|++|++++|.++ .+|..+..+++|+.|++++|.+++..|..+..+++|++|++++|.+.+.+|.. ..
T Consensus 271 ~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l 349 (606)
T 3t6q_A 271 SNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENL 349 (606)
T ss_dssp TTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTC
T ss_pred HHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhcc
Confidence 444555566666666666555 44555555566666666666665555555555666666666666555544432 12
Q ss_pred CCCCEEEeeCCCCCCcc--Cccccc--cc-ccccccccccc
Q 038019 327 ENLQKIDLSHNHLSGTF--PLWVNS--EL-QMNLAVNNFKF 362 (866)
Q Consensus 327 ~~L~~L~Ls~N~l~g~~--p~~~~~--~~-~l~l~~N~~~~ 362 (866)
++|+.|++++|++++.. |..+.. .+ .|++++|.+..
T Consensus 350 ~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 390 (606)
T 3t6q_A 350 ENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLS 390 (606)
T ss_dssp TTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEE
T ss_pred CcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCc
Confidence 45566666666655443 332221 11 25555555543
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.7e-30 Score=291.29 Aligned_cols=289 Identities=17% Similarity=0.114 Sum_probs=194.1
Q ss_pred eeeEEEEEEcccCcCCCCCcccCCCCCCCEEEccCCCCCCCCCccccCCCCcCEEeccCCcCCCCCCccccCCCCCCEee
Q 038019 64 TCHITKLRVYGLNKKGVIPEELVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKELTVLA 143 (866)
Q Consensus 64 ~~~v~~L~l~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 143 (866)
..+++.|++.++.++...+..|..+++|++|+|++|.+++..+..|.++++|++|+|++|.+++..|..|+++++|++|+
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 123 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 123 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence 35789999999988876666688999999999999999988888999999999999999999988888999999999999
Q ss_pred ccCCCCCCCCchhhcCCCCccEEEeecCCCCCCChhhhhcCcCCCEEEecCCCCCCCCcccccCCCCCCeEEccCCCCCC
Q 038019 144 FGTNNFSGALPPELGNLAKLEQLYIDSCGAGGEIPSTFAKLRNMQTLWASDNPFTGKIPDFIGNWTKLKSLRFQGNSFQG 223 (866)
Q Consensus 144 Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~ 223 (866)
|++|.++...+..|.++++|++|+|++|.+++..|..|..+++|++|++++|++++. .+..+++|+.|++++|.+++
T Consensus 124 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~~ 200 (390)
T 3o6n_A 124 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLST 200 (390)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCSE
T ss_pred CCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeecccccccc
Confidence 999999966555679999999999999999999899999999999999999999864 24556777777777776653
Q ss_pred CCchhhcCCCCCCEEEccCccCCCCC-------------------chhhhcCCCCCceeccCcccccCCCcccCCCCCcC
Q 038019 224 PIPSSLSKLASLESLQMSDIYNVSSS-------------------LDFVMSLKNLTDLSLRNALITGTIPFGIGELQMLQ 284 (866)
Q Consensus 224 ~~p~~~~~l~~L~~L~l~~n~~~~~~-------------------~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~ 284 (866)
. ...++|+.|++++|.+.... ...+..+++|+.|+|++|.+++..|..+..+++|+
T Consensus 201 ~-----~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 275 (390)
T 3o6n_A 201 L-----AIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLE 275 (390)
T ss_dssp E-----ECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCC
T ss_pred c-----CCCCcceEEECCCCeeeeccccccccccEEECCCCCCcccHHHcCCCCccEEECCCCcCCCcChhHccccccCC
Confidence 1 22334555555554443221 13344444555555555555444444444555555
Q ss_pred EEeeecCcCcccCCcccCCCCCCcEEECcCCCCcccCCcc--cCCCCCEEEeeCCCCCCccCcccccccccccccccccc
Q 038019 285 ILDLSFNNLTGQIPATLFNIDSLEYLFLGNNSLSGTLPDQ--KSENLQKIDLSHNHLSGTFPLWVNSELQMNLAVNNFKF 362 (866)
Q Consensus 285 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~~p~~--~~~~L~~L~Ls~N~l~g~~p~~~~~~~~l~l~~N~~~~ 362 (866)
.|+|++|++++ +|..+..+++|++|+|++|++++ +|.. .+++|+.|+|++|+++......+.....|++++|++.+
T Consensus 276 ~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~L~~L~l~~N~~~~ 353 (390)
T 3o6n_A 276 RLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLLH-VERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLTLSHNDWDC 353 (390)
T ss_dssp EEECCSSCCCE-EECSSSCCTTCCEEECCSSCCCC-CGGGHHHHTTCSEEECCSSCCCCCCCCTTCCCSEEECCSSCEEH
T ss_pred EEECCCCcCcc-cCcccCCCCCCCEEECCCCccee-cCccccccCcCCEEECCCCccceeCchhhccCCEEEcCCCCccc
Confidence 55555555442 23333444455555555555442 2221 12445555555555443322222222224455554443
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.7e-30 Score=305.70 Aligned_cols=290 Identities=20% Similarity=0.197 Sum_probs=218.4
Q ss_pred eeEEEEEEcccCcCCCCCcccCCCCCCCEEEccCCCCCCCCCccccCCCCcCEEeccCCcCCCCCCccccCCCCCCEeec
Q 038019 65 CHITKLRVYGLNKKGVIPEELVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKELTVLAF 144 (866)
Q Consensus 65 ~~v~~L~l~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 144 (866)
.+++.|++++|.+++..|..|.++++|++|+|++|.+++..|..|.++++|++|+|++|+|+ .+|.. .+++|++|+|
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L 128 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLDL 128 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEEC
T ss_pred CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEEC
Confidence 57999999999999988899999999999999999999888999999999999999999998 56666 8999999999
Q ss_pred cCCCCCC-CCchhhcCCCCccEEEeecCCCCCCChhhhhcCcCC--CEEEecCCCC--CCCCcccccCCC----------
Q 038019 145 GTNNFSG-ALPPELGNLAKLEQLYIDSCGAGGEIPSTFAKLRNM--QTLWASDNPF--TGKIPDFIGNWT---------- 209 (866)
Q Consensus 145 s~N~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L--~~L~L~~N~l--~~~~p~~l~~l~---------- 209 (866)
++|++++ .+|..|+++++|++|+|++|.+++. .+..+++| ++|++++|.+ ++..|..+..+.
T Consensus 129 s~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~ 205 (562)
T 3a79_B 129 SFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHP 205 (562)
T ss_dssp CSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECS
T ss_pred CCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecC
Confidence 9999987 3568999999999999999999864 34555555 9999999988 777666665543
Q ss_pred -----------------------------------------------------------------------CCCeEEccC
Q 038019 210 -----------------------------------------------------------------------KLKSLRFQG 218 (866)
Q Consensus 210 -----------------------------------------------------------------------~L~~L~L~~ 218 (866)
+|++|++++
T Consensus 206 n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~ 285 (562)
T 3a79_B 206 NSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYN 285 (562)
T ss_dssp SSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEE
T ss_pred ccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEec
Confidence 677777777
Q ss_pred CCCCCCCchhh-----cCCC--------------------------CCCEEEccCccCCCCCchhhhcCCCCCceeccCc
Q 038019 219 NSFQGPIPSSL-----SKLA--------------------------SLESLQMSDIYNVSSSLDFVMSLKNLTDLSLRNA 267 (866)
Q Consensus 219 N~l~~~~p~~~-----~~l~--------------------------~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n 267 (866)
|.++|.+|..+ .+++ +|+.|++++|.+.... ....+++|++|++++|
T Consensus 286 n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n 363 (562)
T 3a79_B 286 LTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQN 363 (562)
T ss_dssp EEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSS
T ss_pred cEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEECCCC
Confidence 77777777655 2222 2334444433332111 1145677777777777
Q ss_pred ccccCCCcccCCCCCcCEEeeecCcCcc--cCCcccCCCCCCcEEECcCCCCcccCCccc---CCCCCEEEeeCCCCCCc
Q 038019 268 LITGTIPFGIGELQMLQILDLSFNNLTG--QIPATLFNIDSLEYLFLGNNSLSGTLPDQK---SENLQKIDLSHNHLSGT 342 (866)
Q Consensus 268 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~--~~p~~l~~l~~L~~L~L~~N~l~g~~p~~~---~~~L~~L~Ls~N~l~g~ 342 (866)
.+++.+|..++.+++|+.|++++|++++ .+|..+..+++|++|+|++|++++.+|... .++|+.|++++|++++.
T Consensus 364 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 443 (562)
T 3a79_B 364 VFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGS 443 (562)
T ss_dssp CCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGG
T ss_pred ccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcc
Confidence 7777777777777777777777777775 334567777777777777777776555432 36777777777777777
Q ss_pred cCccccccc-ccccccccccc
Q 038019 343 FPLWVNSEL-QMNLAVNNFKF 362 (866)
Q Consensus 343 ~p~~~~~~~-~l~l~~N~~~~ 362 (866)
+|..+...+ .|++++|.++.
T Consensus 444 ~~~~l~~~L~~L~L~~N~l~~ 464 (562)
T 3a79_B 444 VFRCLPPKVKVLDLHNNRIMS 464 (562)
T ss_dssp GGSSCCTTCSEEECCSSCCCC
T ss_pred hhhhhcCcCCEEECCCCcCcc
Confidence 776664333 37777777763
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.6e-30 Score=307.29 Aligned_cols=307 Identities=17% Similarity=0.116 Sum_probs=250.1
Q ss_pred eeeEEEEEEcccCcCCCCCcccCCCCCCCEEEccCCCCCCCCCccccCCCCcCEEeccCCcCCCCCCccccCCCCCCEee
Q 038019 64 TCHITKLRVYGLNKKGVIPEELVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKELTVLA 143 (866)
Q Consensus 64 ~~~v~~L~l~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 143 (866)
..+++.|++++|.+++..|..|.++++|++|+|++|.+++..|..|+++++|++|+|++|.+++..+..|+++++|++|+
T Consensus 55 l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 134 (606)
T 3vq2_A 55 FSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLN 134 (606)
T ss_dssp CTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEE
T ss_pred CccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEe
Confidence 35788899999888888888888899999999999988887788888888999999998888877777888888888888
Q ss_pred ccCCCCCC-CCchhhcCCCCccEEEeecCCCCCCChhhhh----------------------------------------
Q 038019 144 FGTNNFSG-ALPPELGNLAKLEQLYIDSCGAGGEIPSTFA---------------------------------------- 182 (866)
Q Consensus 144 Ls~N~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~---------------------------------------- 182 (866)
|++|.+++ .+|..++++++|++|+|++|++++..|..|.
T Consensus 135 L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n 214 (606)
T 3vq2_A 135 VAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGN 214 (606)
T ss_dssp CCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESC
T ss_pred CCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCC
Confidence 88888875 5688888888888888888877654443221
Q ss_pred --------------------------------------------------------------------------------
Q 038019 183 -------------------------------------------------------------------------------- 182 (866)
Q Consensus 183 -------------------------------------------------------------------------------- 182 (866)
T Consensus 215 ~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 294 (606)
T 3vq2_A 215 FNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAG 294 (606)
T ss_dssp CSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEES
T ss_pred ccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccccccCCCCCEEEecC
Confidence
Q ss_pred -----------------------------------------------------cCcCCCEEEecCCCCCCC--CcccccC
Q 038019 183 -----------------------------------------------------KLRNMQTLWASDNPFTGK--IPDFIGN 207 (866)
Q Consensus 183 -----------------------------------------------------~l~~L~~L~L~~N~l~~~--~p~~l~~ 207 (866)
.+++|++|++++|.+++. +|..+..
T Consensus 295 ~~~~~l~~l~~~~~L~~L~l~~n~l~~lp~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~ 374 (606)
T 3vq2_A 295 VSIKYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLG 374 (606)
T ss_dssp CCCCCCCCCCTTCCCSEEEEESCCCSSCCCCCCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEEEEEECCHHHHC
T ss_pred ccchhhhhccccccCCEEEcccccCcccccCCCCccceeeccCCcCccchhhccCCCCCEEECcCCccCCCcchhhhhcc
Confidence 123444455555555433 3778889
Q ss_pred CCCCCeEEccCCCCCCCCchhhcCCCCCCEEEccCccCCCCCc-hhhhcCCCCCceeccCcccccCCCcccCCCCCcCEE
Q 038019 208 WTKLKSLRFQGNSFQGPIPSSLSKLASLESLQMSDIYNVSSSL-DFVMSLKNLTDLSLRNALITGTIPFGIGELQMLQIL 286 (866)
Q Consensus 208 l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 286 (866)
+++|++|++++|.+.+ +|..+..+++|+.|++++|.+..... ..+..+++|+.|++++|.+++..|..+..+++|+.|
T Consensus 375 ~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 453 (606)
T 3vq2_A 375 TNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTL 453 (606)
T ss_dssp CSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEE
T ss_pred CCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEE
Confidence 9999999999999885 56889999999999999998876655 678899999999999999999999999999999999
Q ss_pred eeecCcCcc-cCCcccCCCCCCcEEECcCCCCcccCCccc--CCCCCEEEeeCCCCCCccCccccc--cc-ccccccccc
Q 038019 287 DLSFNNLTG-QIPATLFNIDSLEYLFLGNNSLSGTLPDQK--SENLQKIDLSHNHLSGTFPLWVNS--EL-QMNLAVNNF 360 (866)
Q Consensus 287 ~Ls~N~l~~-~~p~~l~~l~~L~~L~L~~N~l~g~~p~~~--~~~L~~L~Ls~N~l~g~~p~~~~~--~~-~l~l~~N~~ 360 (866)
++++|.+++ .+|..+..+++|++|+|++|++++..|... .++|+.|+|++|++++.+|..+.. .+ .|++++|++
T Consensus 454 ~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l 533 (606)
T 3vq2_A 454 KMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRI 533 (606)
T ss_dssp ECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCC
T ss_pred ECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcC
Confidence 999999998 478899999999999999999998877644 479999999999999988887764 23 499999998
Q ss_pred ccccCCCccCC
Q 038019 361 KFDISNISVFP 371 (866)
Q Consensus 361 ~~~~~~~~~~p 371 (866)
+.-...+..+|
T Consensus 534 ~~~p~~~~~l~ 544 (606)
T 3vq2_A 534 ETSKGILQHFP 544 (606)
T ss_dssp CCEESCGGGSC
T ss_pred cccCHhHhhhc
Confidence 75433344444
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.4e-30 Score=300.34 Aligned_cols=287 Identities=21% Similarity=0.196 Sum_probs=226.9
Q ss_pred EEEEEcccCcCCCCCcccCCCCCCCEEEccCCCCCCCCCccccCCCCcCEEeccCCcCCCCCCccccCCCCCCEeeccCC
Q 038019 68 TKLRVYGLNKKGVIPEELVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKELTVLAFGTN 147 (866)
Q Consensus 68 ~~L~l~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N 147 (866)
+.|++++|+++ .+|..+. ++|++|+|++|.+++..|..|.++++|++|+|++|++++..|..|+++++|++|+|++|
T Consensus 3 ~~l~ls~n~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 79 (520)
T 2z7x_B 3 FLVDRSKNGLI-HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN 79 (520)
T ss_dssp CEEECTTSCCS-SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred ceEecCCCCcc-ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence 47899999999 5787776 89999999999999888889999999999999999999888999999999999999999
Q ss_pred CCCCCCchhhcCCCCccEEEeecCCCCC-CChhhhhcCcCCCEEEecCCCCCCCCcccccCCCCC--CeEEccCCCC--C
Q 038019 148 NFSGALPPELGNLAKLEQLYIDSCGAGG-EIPSTFAKLRNMQTLWASDNPFTGKIPDFIGNWTKL--KSLRFQGNSF--Q 222 (866)
Q Consensus 148 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~-~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L--~~L~L~~N~l--~ 222 (866)
+++ .+|.. .+++|++|+|++|.+++ .+|..|+++++|++|++++|.+++ ..+..+++| +.|++++|.+ .
T Consensus 80 ~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~ 153 (520)
T 2z7x_B 80 KLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGE 153 (520)
T ss_dssp CCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTS
T ss_pred cee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeeccccccc
Confidence 998 56666 89999999999999998 578999999999999999999986 456777888 9999999999 6
Q ss_pred CCCchhhcCC--------------------------CCCCEEEccCcc------------------------------CC
Q 038019 223 GPIPSSLSKL--------------------------ASLESLQMSDIY------------------------------NV 246 (866)
Q Consensus 223 ~~~p~~~~~l--------------------------~~L~~L~l~~n~------------------------------~~ 246 (866)
+..|..+..+ ++|+.|++++|. +.
T Consensus 154 ~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~ 233 (520)
T 2z7x_B 154 KEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETT 233 (520)
T ss_dssp SCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEE
T ss_pred ccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccC
Confidence 6666666553 233333333321 11
Q ss_pred CCCchh---hhcCCCCCceeccCcccccCCCccc----------------------------------------------
Q 038019 247 SSSLDF---VMSLKNLTDLSLRNALITGTIPFGI---------------------------------------------- 277 (866)
Q Consensus 247 ~~~~~~---~~~l~~L~~L~L~~n~l~~~~p~~~---------------------------------------------- 277 (866)
...... ....++|+.|++++|.+++.+|..+
T Consensus 234 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~ 313 (520)
T 2z7x_B 234 WNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTR 313 (520)
T ss_dssp HHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSC
T ss_pred HHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCc
Confidence 000000 0012345555555555554444433
Q ss_pred -------CCCCCcCEEeeecCcCcccCCcccCCCCCCcEEECcCCCCcc--cCCc--ccCCCCCEEEeeCCCCCCccCcc
Q 038019 278 -------GELQMLQILDLSFNNLTGQIPATLFNIDSLEYLFLGNNSLSG--TLPD--QKSENLQKIDLSHNHLSGTFPLW 346 (866)
Q Consensus 278 -------~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g--~~p~--~~~~~L~~L~Ls~N~l~g~~p~~ 346 (866)
..+++|+.|++++|++++.+|..+..+++|++|+|++|++++ .+|. ...++|+.|++++|++++.+|..
T Consensus 314 l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~ 393 (520)
T 2z7x_B 314 MVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKG 393 (520)
T ss_dssp CCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGC
T ss_pred cccccchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccc
Confidence 678899999999999999899999999999999999999996 4443 34589999999999999977764
Q ss_pred -cc---ccccccccccccccc
Q 038019 347 -VN---SELQMNLAVNNFKFD 363 (866)
Q Consensus 347 -~~---~~~~l~l~~N~~~~~ 363 (866)
+. ....|++++|.+++.
T Consensus 394 ~~~~l~~L~~L~Ls~N~l~~~ 414 (520)
T 2z7x_B 394 DCSWTKSLLSLNMSSNILTDT 414 (520)
T ss_dssp SCCCCTTCCEEECCSSCCCGG
T ss_pred hhccCccCCEEECcCCCCCcc
Confidence 22 223499999999765
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=7.2e-30 Score=314.34 Aligned_cols=299 Identities=18% Similarity=0.176 Sum_probs=246.0
Q ss_pred eeeEEEEEEcccCcCCCCCcccCCCCCCCEEEccCCCCCCCC-CccccCCCCcCEEeccCCcCCCCCCccccCCCCCCEe
Q 038019 64 TCHITKLRVYGLNKKGVIPEELVTLQYLTVLKIDQNFFTGPL-PSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKELTVL 142 (866)
Q Consensus 64 ~~~v~~L~l~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~-p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 142 (866)
..+++.|+|++|.+++..|..|.++++|++|+|++|.+.+.+ |..|.++++|++|+|++|.+++..|..|+++++|++|
T Consensus 23 p~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 102 (844)
T 3j0a_A 23 LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFEL 102 (844)
T ss_dssp CTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCE
T ss_pred CCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEe
Confidence 357899999999999999999999999999999999666555 7889999999999999999999899999999999999
Q ss_pred eccCCCCCCCCchh--hcCCCCccEEEeecCCCCCCCh-hhhhcCcCCCEEEecCCCCCCCCcccccCC--CCCCeEEcc
Q 038019 143 AFGTNNFSGALPPE--LGNLAKLEQLYIDSCGAGGEIP-STFAKLRNMQTLWASDNPFTGKIPDFIGNW--TKLKSLRFQ 217 (866)
Q Consensus 143 ~Ls~N~l~~~~p~~--l~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l--~~L~~L~L~ 217 (866)
+|++|.+++.+|.. ++++++|++|+|++|.+++..+ ..|+++++|++|+|++|.+++..+..+..+ ++|+.|+|+
T Consensus 103 ~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~ 182 (844)
T 3j0a_A 103 RLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLA 182 (844)
T ss_dssp ECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEEC
T ss_pred eCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECC
Confidence 99999999877766 9999999999999999988755 679999999999999999999888888877 889999999
Q ss_pred CCCCCCCCchhhcCCCC------CCEEEccCccCCCCCch------------------------------------hhhc
Q 038019 218 GNSFQGPIPSSLSKLAS------LESLQMSDIYNVSSSLD------------------------------------FVMS 255 (866)
Q Consensus 218 ~N~l~~~~p~~~~~l~~------L~~L~l~~n~~~~~~~~------------------------------------~~~~ 255 (866)
.|.+.+..|..+..+.+ |+.|++++|.+...... .+.+
T Consensus 183 ~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~ 262 (844)
T 3j0a_A 183 ANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAG 262 (844)
T ss_dssp CSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTT
T ss_pred CCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhc
Confidence 99988887777666655 88888888754322111 1111
Q ss_pred --CCCCCceeccCcccccCCCcccCCCCCcCEEeeecCcCcccCCcccCCCCCCcEEECcCCCCcccCCccc--CCCCCE
Q 038019 256 --LKNLTDLSLRNALITGTIPFGIGELQMLQILDLSFNNLTGQIPATLFNIDSLEYLFLGNNSLSGTLPDQK--SENLQK 331 (866)
Q Consensus 256 --l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~~p~~~--~~~L~~ 331 (866)
.++|+.|+|++|.+.+..+..|..+++|+.|+|++|.+++..+..|..+++|++|+|++|++++..|... .++|+.
T Consensus 263 l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 342 (844)
T 3j0a_A 263 LARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAY 342 (844)
T ss_dssp TTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCE
T ss_pred cccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCE
Confidence 2578888888888888778888888888888888888888888888888888888888888887666543 467888
Q ss_pred EEeeCCCCCCccCccccc--cc-ccccccccccc
Q 038019 332 IDLSHNHLSGTFPLWVNS--EL-QMNLAVNNFKF 362 (866)
Q Consensus 332 L~Ls~N~l~g~~p~~~~~--~~-~l~l~~N~~~~ 362 (866)
|++++|++++..+..+.. .+ .|++++|.++.
T Consensus 343 L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~ 376 (844)
T 3j0a_A 343 IDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT 376 (844)
T ss_dssp EECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCC
T ss_pred EECCCCCCCccChhhhcCCCCCCEEECCCCCCCc
Confidence 888888887766655432 22 37888887764
|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-29 Score=302.64 Aligned_cols=140 Identities=17% Similarity=0.142 Sum_probs=127.8
Q ss_pred eeeEEEEEEcccCcCCCCCcccCCCCCCCEEEccCCCCCCCCCccccCCCCcCEEeccCCcCCCCCCccccCCCCCCEee
Q 038019 64 TCHITKLRVYGLNKKGVIPEELVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKELTVLA 143 (866)
Q Consensus 64 ~~~v~~L~l~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 143 (866)
..+++.|+|++|++++..+.+|.++++|++|||++|+|+++.|.+|.+|++|++|+|++|+|++..+..|.++++|++|+
T Consensus 51 p~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~ 130 (635)
T 4g8a_A 51 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 130 (635)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEE
T ss_pred CcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEE
Confidence 35799999999999988888999999999999999999988888999999999999999999987778899999999999
Q ss_pred ccCCCCCCCCchhhcCCCCccEEEeecCCCCC-CChhhhhcCcCCCEEEecCCCCCCCCcc
Q 038019 144 FGTNNFSGALPPELGNLAKLEQLYIDSCGAGG-EIPSTFAKLRNMQTLWASDNPFTGKIPD 203 (866)
Q Consensus 144 Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~-~~p~~~~~l~~L~~L~L~~N~l~~~~p~ 203 (866)
|++|++++..+..|+++++|++|+|++|.++. ..|..+..+++|++|+|++|++++..+.
T Consensus 131 Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 191 (635)
T 4g8a_A 131 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT 191 (635)
T ss_dssp CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGG
T ss_pred CCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccc
Confidence 99999998877889999999999999999976 4688899999999999999988755443
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.7e-30 Score=283.70 Aligned_cols=270 Identities=19% Similarity=0.277 Sum_probs=193.4
Q ss_pred HHHHHHHHHHHHhCC-CC--CCCCCc----CCCCCCCCCCCCCcccCCCCCCCCCCeeccccC---CCCCeeeEEEEEEc
Q 038019 4 KHAVRALNSILQQWD-AP--AVPLWN----ISGNPCSGSALNATDSEFESPNNNPAIVCNCTF---DNGATCHITKLRVY 73 (866)
Q Consensus 4 ~~~~~~l~~~~~~~~-~~--~~~~w~----~~~~~C~~~~~~~~~~~~~~~~~~~~v~C~~~~---~~~~~~~v~~L~l~ 73 (866)
.+|++||+++|+++. ++ ...+|. ...++|. | .|+.|+... ......+++.|+++
T Consensus 26 ~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~----~------------~g~~~~~~~~~l~~~~~~~l~~L~L~ 89 (328)
T 4fcg_A 26 RPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIET----R------------TGRALKATADLLEDATQPGRVALELR 89 (328)
T ss_dssp CCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCC----S------------HHHHHHHHHHHHHHHTSTTCCEEEEE
T ss_pred chHHHHHHHHHHhccCCchhhhhhhcccccccccccc----c------------CCcchhhhHHHHhcccccceeEEEcc
Confidence 468899999999883 33 124563 2345552 4 688884210 00112468888888
Q ss_pred ccCcCCCCCcccCCCCCCCEEEccCCCCCCCCCccccCCCCcCEEeccCCcCCCCCCccccCCCCCCEeeccCCCCCCCC
Q 038019 74 GLNKKGVIPEELVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKELTVLAFGTNNFSGAL 153 (866)
Q Consensus 74 ~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~ 153 (866)
+|+++ .+|..+.++++|++|+|++|.++ .+|..++++++|++|+|++|.++ .+|..|+++++|++|+|++|++.+.+
T Consensus 90 ~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~ 166 (328)
T 4fcg_A 90 SVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTEL 166 (328)
T ss_dssp SSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCC
T ss_pred CCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCcccc
Confidence 88887 67878888888999999888888 78888888888888888888888 77888888888888888888888888
Q ss_pred chhhcC---------CCCccEEEeecCCCCCCChhhhhcCcCCCEEEecCCCCCCCCcccccCCCCCCeEEccCCCCCCC
Q 038019 154 PPELGN---------LAKLEQLYIDSCGAGGEIPSTFAKLRNMQTLWASDNPFTGKIPDFIGNWTKLKSLRFQGNSFQGP 224 (866)
Q Consensus 154 p~~l~~---------l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ 224 (866)
|..++. +++|++|+|++|+++ .+|..+.++++|++|+|++|.+++ +|..+..+++|++|+|++|.+.+.
T Consensus 167 p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~ 244 (328)
T 4fcg_A 167 PEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRN 244 (328)
T ss_dssp CSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCB
T ss_pred ChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhh
Confidence 877654 777777777777776 666677777777777777777774 455677777777777777777777
Q ss_pred CchhhcCCCCCCEEEccCccCCCCCchhhhcCCCCCceeccCcccccCCCcccCCCCCcCEEeeecCcCcccCCcccCCC
Q 038019 225 IPSSLSKLASLESLQMSDIYNVSSSLDFVMSLKNLTDLSLRNALITGTIPFGIGELQMLQILDLSFNNLTGQIPATLFNI 304 (866)
Q Consensus 225 ~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l 304 (866)
+|..|.++++|+.|+ |++|.+.+.+|..+..+++|+.|+|++|++.+.+|..+.++
T Consensus 245 ~p~~~~~l~~L~~L~------------------------L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L 300 (328)
T 4fcg_A 245 YPPIFGGRAPLKRLI------------------------LKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQL 300 (328)
T ss_dssp CCCCTTCCCCCCEEE------------------------CTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGS
T ss_pred hHHHhcCCCCCCEEE------------------------CCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhc
Confidence 666666655555555 45555555666666666667777777766666677777777
Q ss_pred CCCcEEECcCCCCc
Q 038019 305 DSLEYLFLGNNSLS 318 (866)
Q Consensus 305 ~~L~~L~L~~N~l~ 318 (866)
++|+.+++..|.+.
T Consensus 301 ~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 301 PANCIILVPPHLQA 314 (328)
T ss_dssp CTTCEEECCGGGSC
T ss_pred cCceEEeCCHHHHH
Confidence 77777766665544
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=5.8e-29 Score=272.23 Aligned_cols=268 Identities=21% Similarity=0.274 Sum_probs=227.7
Q ss_pred eeeEEEEEEcccCcCCCCCcccCCCCCCCEEEccCCCCCCCCCccccCCCCcCEEeccCCcCCCCCCccccCCCCCCEee
Q 038019 64 TCHITKLRVYGLNKKGVIPEELVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKELTVLA 143 (866)
Q Consensus 64 ~~~v~~L~l~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 143 (866)
.|+++.+++.++.++ .+|..+. ++|++|+|++|.+++..+..|.++++|++|+|++|.+++..|..|+++++|++|+
T Consensus 30 ~c~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (330)
T 1xku_A 30 QCHLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLY 106 (330)
T ss_dssp EEETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEE
T ss_pred cCCCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEE
Confidence 456778888888876 4565554 6899999999999987777899999999999999999988899999999999999
Q ss_pred ccCCCCCCCCchhhcCCCCccEEEeecCCCCCCChhhhhcCcCCCEEEecCCCCCC--CCcccccCCCCCCeEEccCCCC
Q 038019 144 FGTNNFSGALPPELGNLAKLEQLYIDSCGAGGEIPSTFAKLRNMQTLWASDNPFTG--KIPDFIGNWTKLKSLRFQGNSF 221 (866)
Q Consensus 144 Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~--~~p~~l~~l~~L~~L~L~~N~l 221 (866)
|++|.++ .+|..+. ++|++|++++|.+++..+..|.++++|++|++++|.++. ..+..+.++++|++|++++|.+
T Consensus 107 Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l 183 (330)
T 1xku_A 107 LSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI 183 (330)
T ss_dssp CCSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCC
T ss_pred CCCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcc
Confidence 9999998 5565554 789999999999999888899999999999999999864 6778889999999999999999
Q ss_pred CCCCchhhcCCCCCCEEEccCccCCCCCchhhhcCCCCCceeccCcccccCCCcccCCCCCcCEEeeecCcCcccCCccc
Q 038019 222 QGPIPSSLSKLASLESLQMSDIYNVSSSLDFVMSLKNLTDLSLRNALITGTIPFGIGELQMLQILDLSFNNLTGQIPATL 301 (866)
Q Consensus 222 ~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l 301 (866)
+. +|..+. ++|+.|++++|.+.......+..+++|+.|+|++|.+++..+..+..+++|+.|+|++|+++ .+|..+
T Consensus 184 ~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l 259 (330)
T 1xku_A 184 TT-IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGL 259 (330)
T ss_dssp CS-CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTT
T ss_pred cc-CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhh
Confidence 84 554443 78999999999888777778889999999999999999887778889999999999999998 778888
Q ss_pred CCCCCCcEEECcCCCCcccCCccc--------CCCCCEEEeeCCCCCC
Q 038019 302 FNIDSLEYLFLGNNSLSGTLPDQK--------SENLQKIDLSHNHLSG 341 (866)
Q Consensus 302 ~~l~~L~~L~L~~N~l~g~~p~~~--------~~~L~~L~Ls~N~l~g 341 (866)
..+++|++|+|++|++++..+..+ ...++.|++++|++..
T Consensus 260 ~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~ 307 (330)
T 1xku_A 260 ADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQY 307 (330)
T ss_dssp TTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCG
T ss_pred ccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccc
Confidence 999999999999999986544332 2568889999998863
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.6e-29 Score=297.45 Aligned_cols=287 Identities=19% Similarity=0.128 Sum_probs=228.6
Q ss_pred EEEEEcccCcCCCCCcccCCCCCCCEEEccCCCCCCCCCccccCCCCcCEEeccCCcCCCCCCccccCCCCCCEeeccCC
Q 038019 68 TKLRVYGLNKKGVIPEELVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKELTVLAFGTN 147 (866)
Q Consensus 68 ~~L~l~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N 147 (866)
+.++++++++++ +|..+. ++|++|+|++|.+++..|..|.++++|++|+|++|++++..|+.|.++++|++|+|++|
T Consensus 34 ~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 110 (562)
T 3a79_B 34 SMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN 110 (562)
T ss_dssp CEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTS
T ss_pred cEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCC
Confidence 789999999996 777665 89999999999999888889999999999999999999988999999999999999999
Q ss_pred CCCCCCchhhcCCCCccEEEeecCCCCC-CChhhhhcCcCCCEEEecCCCCCCCCcccccCCCCC--CeEEccCCCC--C
Q 038019 148 NFSGALPPELGNLAKLEQLYIDSCGAGG-EIPSTFAKLRNMQTLWASDNPFTGKIPDFIGNWTKL--KSLRFQGNSF--Q 222 (866)
Q Consensus 148 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~-~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L--~~L~L~~N~l--~ 222 (866)
+++ .+|.. .+++|++|+|++|++++ .+|..|+++++|++|++++|++++. .+..+++| +.|++++|.+ +
T Consensus 111 ~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~ 184 (562)
T 3a79_B 111 RLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIK 184 (562)
T ss_dssp CCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCC
T ss_pred cCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeeccccccc
Confidence 998 56665 89999999999999998 4678999999999999999999864 34455555 9999999999 7
Q ss_pred CCCchhhcCC--------------------------CCCCEEEccCccCC----------------------------CC
Q 038019 223 GPIPSSLSKL--------------------------ASLESLQMSDIYNV----------------------------SS 248 (866)
Q Consensus 223 ~~~p~~~~~l--------------------------~~L~~L~l~~n~~~----------------------------~~ 248 (866)
+..|..+..+ ++|+.|++++|... ..
T Consensus 185 ~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~ 264 (562)
T 3a79_B 185 GGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWK 264 (562)
T ss_dssp SSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHH
T ss_pred ccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHH
Confidence 7766666553 34445555444210 00
Q ss_pred C---chhhhcCCCCCceeccCcccccCCCccc------------------------------------------------
Q 038019 249 S---LDFVMSLKNLTDLSLRNALITGTIPFGI------------------------------------------------ 277 (866)
Q Consensus 249 ~---~~~~~~l~~L~~L~L~~n~l~~~~p~~~------------------------------------------------ 277 (866)
. .......++|++|++++|.+++.+|..+
T Consensus 265 ~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~ 344 (562)
T 3a79_B 265 CSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFI 344 (562)
T ss_dssp HHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCC
T ss_pred HHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcc
Confidence 0 0001112366666666676666555543
Q ss_pred -----CCCCCcCEEeeecCcCcccCCcccCCCCCCcEEECcCCCCcccC--Cc--ccCCCCCEEEeeCCCCCCccCcccc
Q 038019 278 -----GELQMLQILDLSFNNLTGQIPATLFNIDSLEYLFLGNNSLSGTL--PD--QKSENLQKIDLSHNHLSGTFPLWVN 348 (866)
Q Consensus 278 -----~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~~--p~--~~~~~L~~L~Ls~N~l~g~~p~~~~ 348 (866)
..+++|+.|++++|.+++.+|..+..+++|++|+|++|++++.. |. ...++|+.|++++|++++.+|....
T Consensus 345 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~ 424 (562)
T 3a79_B 345 HMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTC 424 (562)
T ss_dssp CCCCCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCC
T ss_pred cccCccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhh
Confidence 67899999999999999999999999999999999999999632 22 3358999999999999997776432
Q ss_pred ----ccccccccccccccc
Q 038019 349 ----SELQMNLAVNNFKFD 363 (866)
Q Consensus 349 ----~~~~l~l~~N~~~~~ 363 (866)
....|++++|.+++.
T Consensus 425 ~~l~~L~~L~l~~n~l~~~ 443 (562)
T 3a79_B 425 AWAESILVLNLSSNMLTGS 443 (562)
T ss_dssp CCCTTCCEEECCSSCCCGG
T ss_pred cCcccCCEEECCCCCCCcc
Confidence 223499999999765
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.1e-29 Score=276.02 Aligned_cols=273 Identities=23% Similarity=0.322 Sum_probs=236.0
Q ss_pred eeeEEEEEEcccCcCCCCCcccCCCCCCCEEEccCCCCCCCCCccccCCCCcCEEeccCCcCCCCCCccccCCCCCCEee
Q 038019 64 TCHITKLRVYGLNKKGVIPEELVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKELTVLA 143 (866)
Q Consensus 64 ~~~v~~L~l~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 143 (866)
.|+++.+++++++++ .+|..+. ++|++|+|++|.+++..|..|.++++|++|+|++|++++..|..|+++++|++|+
T Consensus 32 ~c~l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 108 (332)
T 2ft3_A 32 HCHLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLY 108 (332)
T ss_dssp EEETTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEE
T ss_pred cccCCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEE
Confidence 467888999998887 5676664 6899999999999988888999999999999999999988899999999999999
Q ss_pred ccCCCCCCCCchhhcCCCCccEEEeecCCCCCCChhhhhcCcCCCEEEecCCCCC--CCCcccccCCCCCCeEEccCCCC
Q 038019 144 FGTNNFSGALPPELGNLAKLEQLYIDSCGAGGEIPSTFAKLRNMQTLWASDNPFT--GKIPDFIGNWTKLKSLRFQGNSF 221 (866)
Q Consensus 144 Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~--~~~p~~l~~l~~L~~L~L~~N~l 221 (866)
|++|.++ .+|..+. ++|++|+|++|.++...+..|.++++|++|++++|.++ +..+..+..+ +|+.|++++|.+
T Consensus 109 L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l 184 (332)
T 2ft3_A 109 ISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKL 184 (332)
T ss_dssp CCSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBC
T ss_pred CCCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCC
Confidence 9999998 5666655 89999999999999888888999999999999999996 3677888888 999999999999
Q ss_pred CCCCchhhcCCCCCCEEEccCccCCCCCchhhhcCCCCCceeccCcccccCCCcccCCCCCcCEEeeecCcCcccCCccc
Q 038019 222 QGPIPSSLSKLASLESLQMSDIYNVSSSLDFVMSLKNLTDLSLRNALITGTIPFGIGELQMLQILDLSFNNLTGQIPATL 301 (866)
Q Consensus 222 ~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l 301 (866)
++ +|..+. ++|+.|++++|.+.......+..+++|+.|+|++|.+++..+..+..+++|+.|++++|+++ .+|..+
T Consensus 185 ~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l 260 (332)
T 2ft3_A 185 TG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGL 260 (332)
T ss_dssp SS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTG
T ss_pred Cc-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhh
Confidence 86 555443 78999999999998887788899999999999999999888888999999999999999998 788889
Q ss_pred CCCCCCcEEECcCCCCcccCCccc--------CCCCCEEEeeCCCCC--CccCccc
Q 038019 302 FNIDSLEYLFLGNNSLSGTLPDQK--------SENLQKIDLSHNHLS--GTFPLWV 347 (866)
Q Consensus 302 ~~l~~L~~L~L~~N~l~g~~p~~~--------~~~L~~L~Ls~N~l~--g~~p~~~ 347 (866)
..+++|++|+|++|++++..+... ...|+.|++++|++. +..|..+
T Consensus 261 ~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~ 316 (332)
T 2ft3_A 261 PDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATF 316 (332)
T ss_dssp GGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGG
T ss_pred hcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccc
Confidence 999999999999999986544322 246889999999987 4444443
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-29 Score=297.90 Aligned_cols=304 Identities=20% Similarity=0.234 Sum_probs=200.8
Q ss_pred eeeEEEEEEcccCcCCCCCcccCCCCCCCEEEccCCCCCCCCCccccCCCCcCEEeccCCcCCC-CCCccccCCCCCCEe
Q 038019 64 TCHITKLRVYGLNKKGVIPEELVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSG-PVPRELGNLKELTVL 142 (866)
Q Consensus 64 ~~~v~~L~l~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~-~~p~~l~~l~~L~~L 142 (866)
..++++|++++|.+++..|..|.++++|++|+|++|.+++..|..|+++++|++|+|++|.+++ ..|..|+++++|++|
T Consensus 49 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L 128 (549)
T 2z81_A 49 CANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTL 128 (549)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEE
T ss_pred CCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEE
Confidence 4579999999999999888999999999999999999998888889999999999999999986 467889999999999
Q ss_pred eccCCCCCCCCc-hhhcCCCCccEEEeecCCCCCCChhhhhc------------------------CcCCCEEEecCCCC
Q 038019 143 AFGTNNFSGALP-PELGNLAKLEQLYIDSCGAGGEIPSTFAK------------------------LRNMQTLWASDNPF 197 (866)
Q Consensus 143 ~Ls~N~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~p~~~~~------------------------l~~L~~L~L~~N~l 197 (866)
+|++|.+.+.+| ..+.++++|++|+|++|.+++..|..+.. +++|++|++++|++
T Consensus 129 ~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l 208 (549)
T 2z81_A 129 RIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNL 208 (549)
T ss_dssp EEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBC
T ss_pred ECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCcc
Confidence 999998544554 67899999999999999988877766543 56777777777777
Q ss_pred CCCC----------------------------------------------------------------------------
Q 038019 198 TGKI---------------------------------------------------------------------------- 201 (866)
Q Consensus 198 ~~~~---------------------------------------------------------------------------- 201 (866)
++..
T Consensus 209 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l 288 (549)
T 2z81_A 209 ARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTI 288 (549)
T ss_dssp TTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEE
T ss_pred ccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccc
Confidence 6521
Q ss_pred -------------------------------------cccc-cCCCCCCeEEccCCCCCCCCch---hhcCCCCCCEEEc
Q 038019 202 -------------------------------------PDFI-GNWTKLKSLRFQGNSFQGPIPS---SLSKLASLESLQM 240 (866)
Q Consensus 202 -------------------------------------p~~l-~~l~~L~~L~L~~N~l~~~~p~---~~~~l~~L~~L~l 240 (866)
|..+ ..+++|++|+|++|++.+.+|. .++.+++|+.|++
T Consensus 289 ~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~L 368 (549)
T 2z81_A 289 RRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVL 368 (549)
T ss_dssp ESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEEC
T ss_pred cccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEc
Confidence 1111 1244445555555554443322 2344455555555
Q ss_pred cCccCCCCCc--hhhhcCCCCCceeccCcccccCCCcccCCCCCcCEEeeecCcCcccCCcccCCCCCCcEEECcCCCCc
Q 038019 241 SDIYNVSSSL--DFVMSLKNLTDLSLRNALITGTIPFGIGELQMLQILDLSFNNLTGQIPATLFNIDSLEYLFLGNNSLS 318 (866)
Q Consensus 241 ~~n~~~~~~~--~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~ 318 (866)
++|.+..... ..+..+++|+.|+|++|.++ .+|..+..+++|+.|++++|.++. +|..+ .++|++|+|++|+++
T Consensus 369 s~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~-l~~~~--~~~L~~L~Ls~N~l~ 444 (549)
T 2z81_A 369 SQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRV-VKTCI--PQTLEVLDVSNNNLD 444 (549)
T ss_dssp TTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSC-CCTTS--CTTCSEEECCSSCCS
T ss_pred cCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCccc-ccchh--cCCceEEECCCCChh
Confidence 5554433221 23455555666666666555 345555555556666666665542 22222 134555555555555
Q ss_pred ccCCcccCCCCCEEEeeCCCCCCccCcccc-ccc-cccccccccccccCC-CccCCCcc
Q 038019 319 GTLPDQKSENLQKIDLSHNHLSGTFPLWVN-SEL-QMNLAVNNFKFDISN-ISVFPGLN 374 (866)
Q Consensus 319 g~~p~~~~~~L~~L~Ls~N~l~g~~p~~~~-~~~-~l~l~~N~~~~~~~~-~~~~p~l~ 374 (866)
+.+ ...++|+.|+|++|+++ .+|.... ..+ .|++++|++++.... +..++.+.
T Consensus 445 ~~~--~~l~~L~~L~Ls~N~l~-~ip~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 500 (549)
T 2z81_A 445 SFS--LFLPRLQELYISRNKLK-TLPDASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQ 500 (549)
T ss_dssp CCC--CCCTTCCEEECCSSCCS-SCCCGGGCTTCCEEECCSSCCCCCCTTGGGGCTTCC
T ss_pred hhc--ccCChhcEEECCCCccC-cCCCcccCccCCEEecCCCccCCcCHHHHhcCcccC
Confidence 432 23467888888888887 5665321 233 388888888765432 23344443
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.7e-29 Score=297.94 Aligned_cols=155 Identities=26% Similarity=0.225 Sum_probs=110.6
Q ss_pred CCCCeEEccCCCCCCCC--chhhcCCCCCCEEEccCccCCCCCchhhhcCCCCCceeccCcccccCCC-cccCCCCCcCE
Q 038019 209 TKLKSLRFQGNSFQGPI--PSSLSKLASLESLQMSDIYNVSSSLDFVMSLKNLTDLSLRNALITGTIP-FGIGELQMLQI 285 (866)
Q Consensus 209 ~~L~~L~L~~N~l~~~~--p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~ 285 (866)
++|+.|++++|.+++.. +..+.++++|+.|++++|.+...... +..+++|+.|++++|.+.+..+ ..+..+++|+.
T Consensus 347 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~ 425 (570)
T 2z63_A 347 PSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIY 425 (570)
T ss_dssp TTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCE
T ss_pred CCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCE
Confidence 44555555555555332 56677788888898888876644433 6778888888888888877655 46777888888
Q ss_pred EeeecCcCcccCCcccCCCCCCcEEECcCCCCc-ccCCccc--CCCCCEEEeeCCCCCCccCccccc--cc-cccccccc
Q 038019 286 LDLSFNNLTGQIPATLFNIDSLEYLFLGNNSLS-GTLPDQK--SENLQKIDLSHNHLSGTFPLWVNS--EL-QMNLAVNN 359 (866)
Q Consensus 286 L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~-g~~p~~~--~~~L~~L~Ls~N~l~g~~p~~~~~--~~-~l~l~~N~ 359 (866)
|++++|.+.+..|..+..+++|++|+|++|.++ +.+|... .++|+.|+|++|++++..|.++.. .+ .|++++|.
T Consensus 426 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 505 (570)
T 2z63_A 426 LDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQ 505 (570)
T ss_dssp EECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCc
Confidence 888888888777778888888888888888876 4566433 367888888888888777766653 23 37888887
Q ss_pred ccccc
Q 038019 360 FKFDI 364 (866)
Q Consensus 360 ~~~~~ 364 (866)
+++..
T Consensus 506 l~~~~ 510 (570)
T 2z63_A 506 LKSVP 510 (570)
T ss_dssp CSCCC
T ss_pred CCCCC
Confidence 76543
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=4.6e-29 Score=307.14 Aligned_cols=296 Identities=22% Similarity=0.238 Sum_probs=243.5
Q ss_pred eeeEEEEEEcccCcCCCC-CcccCCCCCCCEEEccCCCCCCCCCccccCCCCcCEEeccCCcCCCCCCcc--ccCCCCCC
Q 038019 64 TCHITKLRVYGLNKKGVI-PEELVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRE--LGNLKELT 140 (866)
Q Consensus 64 ~~~v~~L~l~~~~l~~~~-p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~--l~~l~~L~ 140 (866)
..+++.|+|++|+..+.+ |..|.++++|++|+|++|.+++..|..|+++++|++|+|++|.+++.+|.. |+++++|+
T Consensus 47 l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~ 126 (844)
T 3j0a_A 47 LEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALT 126 (844)
T ss_dssp CCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCC
T ss_pred cccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCC
Confidence 468999999999877777 788999999999999999999989999999999999999999999877765 99999999
Q ss_pred EeeccCCCCCCCCc-hhhcCCCCccEEEeecCCCCCCChhhhhcC--cCCCEEEecCCCCCCCCcccccCCCC------C
Q 038019 141 VLAFGTNNFSGALP-PELGNLAKLEQLYIDSCGAGGEIPSTFAKL--RNMQTLWASDNPFTGKIPDFIGNWTK------L 211 (866)
Q Consensus 141 ~L~Ls~N~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l--~~L~~L~L~~N~l~~~~p~~l~~l~~------L 211 (866)
+|+|++|.+++..+ ..|+++++|++|+|++|.+++..+..|..+ ++|+.|+++.|.+.+..|..++.+++ |
T Consensus 127 ~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L 206 (844)
T 3j0a_A 127 RLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVL 206 (844)
T ss_dssp EEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCB
T ss_pred EEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCce
Confidence 99999999988765 589999999999999999999999999888 88999999999998888777766655 8
Q ss_pred CeEEccCCCCCCCCchhhcC--------------------------------------CCCCCEEEccCccCCCCCchhh
Q 038019 212 KSLRFQGNSFQGPIPSSLSK--------------------------------------LASLESLQMSDIYNVSSSLDFV 253 (866)
Q Consensus 212 ~~L~L~~N~l~~~~p~~~~~--------------------------------------l~~L~~L~l~~n~~~~~~~~~~ 253 (866)
+.|+|++|.+++..+..+.. .++|+.|++++|.+.......+
T Consensus 207 ~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~ 286 (844)
T 3j0a_A 207 EILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVF 286 (844)
T ss_dssp SEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCS
T ss_pred eEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhh
Confidence 88999888777655543322 2578888888888776666677
Q ss_pred hcCCCCCceeccCcccccCCCcccCCCCCcCEEeeecCcCcccCCcccCCCCCCcEEECcCCCCcccCCccc--CCCCCE
Q 038019 254 MSLKNLTDLSLRNALITGTIPFGIGELQMLQILDLSFNNLTGQIPATLFNIDSLEYLFLGNNSLSGTLPDQK--SENLQK 331 (866)
Q Consensus 254 ~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~~p~~~--~~~L~~ 331 (866)
..+++|+.|+|++|.+++..+..|..+++|+.|+|++|.+++..|..+..+++|++|+|++|++++..+... .++|+.
T Consensus 287 ~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~ 366 (844)
T 3j0a_A 287 ETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQT 366 (844)
T ss_dssp SSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCE
T ss_pred hcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCE
Confidence 888888888888888888888888888888888888888888778888888888888888888876555432 478888
Q ss_pred EEeeCCCCCCccCccccccccccccccccc
Q 038019 332 IDLSHNHLSGTFPLWVNSELQMNLAVNNFK 361 (866)
Q Consensus 332 L~Ls~N~l~g~~p~~~~~~~~l~l~~N~~~ 361 (866)
|+|++|.+++... +.....+++++|++.
T Consensus 367 L~Ls~N~l~~i~~--~~~L~~L~l~~N~l~ 394 (844)
T 3j0a_A 367 LDLRDNALTTIHF--IPSIPDIFLSGNKLV 394 (844)
T ss_dssp EEEETCCSCCCSS--CCSCSEEEEESCCCC
T ss_pred EECCCCCCCcccC--CCCcchhccCCCCcc
Confidence 8888888875322 222223556666554
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=4.6e-29 Score=300.68 Aligned_cols=297 Identities=20% Similarity=0.220 Sum_probs=237.2
Q ss_pred eeEEEEEEcccCcCCCCCcccCCCCCCCEEEccCCCCCCCCCccccCCCCcCEEeccCCcCCCCCCccccCCCCCCEeec
Q 038019 65 CHITKLRVYGLNKKGVIPEELVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKELTVLAF 144 (866)
Q Consensus 65 ~~v~~L~l~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 144 (866)
.+++.|++++|++++..+..|.++++|++|+|++|.+++..|..|+++++|++|+|++|.+++..+..|+++++|++|+|
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 104 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHL 104 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEEC
Confidence 57999999999999988888999999999999999999989999999999999999999999766668999999999999
Q ss_pred cCCCCCCCCchhhcCCCCccEEEeecCCCCCCChhhhhcCcCCCEEEecCCCCCCCCccccc--CCCCCCeEEccCCCCC
Q 038019 145 GTNNFSGALPPELGNLAKLEQLYIDSCGAGGEIPSTFAKLRNMQTLWASDNPFTGKIPDFIG--NWTKLKSLRFQGNSFQ 222 (866)
Q Consensus 145 s~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~--~l~~L~~L~L~~N~l~ 222 (866)
++|.+++..|..|+++++|++|+|++|.+++..|..+.++++|++|++++|.+++..+..+. .+++|+.|++++|.++
T Consensus 105 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~ 184 (680)
T 1ziw_A 105 MSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIK 184 (680)
T ss_dssp CSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCC
T ss_pred CCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCccc
Confidence 99999988888999999999999999999999999999999999999999999988777664 5689999999999999
Q ss_pred CCCchhhcCCCC---------------------------CCEEEccCccCCCCCchhhhcCCC--CCceeccCcccccCC
Q 038019 223 GPIPSSLSKLAS---------------------------LESLQMSDIYNVSSSLDFVMSLKN--LTDLSLRNALITGTI 273 (866)
Q Consensus 223 ~~~p~~~~~l~~---------------------------L~~L~l~~n~~~~~~~~~~~~l~~--L~~L~L~~n~l~~~~ 273 (866)
+..|..|..+.+ |+.|++++|.+.......+..++. |+.|+|++|.+++..
T Consensus 185 ~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~ 264 (680)
T 1ziw_A 185 EFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVG 264 (680)
T ss_dssp CBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEEC
T ss_pred ccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccC
Confidence 888887776544 555555555555444445555543 777777777777777
Q ss_pred CcccCCCCCcCEEeeecCcCcccCCcccCCCCCCcEEECcCCCCccc-----CCc------ccCCCCCEEEeeCCCCCCc
Q 038019 274 PFGIGELQMLQILDLSFNNLTGQIPATLFNIDSLEYLFLGNNSLSGT-----LPD------QKSENLQKIDLSHNHLSGT 342 (866)
Q Consensus 274 p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~-----~p~------~~~~~L~~L~Ls~N~l~g~ 342 (866)
+..|+.+++|+.|++++|.+++..|..+..+++|++|++++|...+. +|. ...++|+.|++++|++++.
T Consensus 265 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~ 344 (680)
T 1ziw_A 265 NDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGI 344 (680)
T ss_dssp TTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCC
T ss_pred cccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCC
Confidence 77777777777777777777777777777777777777777655432 221 1235777778887777776
Q ss_pred cCccccc--cc-cccccccccc
Q 038019 343 FPLWVNS--EL-QMNLAVNNFK 361 (866)
Q Consensus 343 ~p~~~~~--~~-~l~l~~N~~~ 361 (866)
.|..+.. .+ .|++++|.+.
T Consensus 345 ~~~~~~~l~~L~~L~Ls~n~~~ 366 (680)
T 1ziw_A 345 KSNMFTGLINLKYLSLSNSFTS 366 (680)
T ss_dssp CTTTTTTCTTCCEEECTTCBSC
T ss_pred ChhHhccccCCcEEECCCCchh
Confidence 6655442 22 3677766654
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=6.9e-29 Score=299.13 Aligned_cols=297 Identities=22% Similarity=0.192 Sum_probs=206.0
Q ss_pred eEEEEEEcccCcCCCCCcccCCCCCCCEEEccCCCCCCCCCccccCCCCcCEEeccCCcCCC-----CCCc----cccCC
Q 038019 66 HITKLRVYGLNKKGVIPEELVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSG-----PVPR----ELGNL 136 (866)
Q Consensus 66 ~v~~L~l~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~-----~~p~----~l~~l 136 (866)
+++.|++++|.+++..|..|..+++|++|+|++|.+++..|..|.++++|++|+|++|...+ .+|. .|..+
T Consensus 249 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l 328 (680)
T 1ziw_A 249 NLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWL 328 (680)
T ss_dssp CCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTC
T ss_pred CCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccC
Confidence 37777777777777777777777777777777777776666656655555555555543332 1222 45556
Q ss_pred CCCCEeeccCCCCCCCCchhhcCCCCccEEEe----------------------------ecCCCCCCChhhhhcCcCCC
Q 038019 137 KELTVLAFGTNNFSGALPPELGNLAKLEQLYI----------------------------DSCGAGGEIPSTFAKLRNMQ 188 (866)
Q Consensus 137 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L----------------------------~~n~l~~~~p~~~~~l~~L~ 188 (866)
++|++|++++|.+++..+..|.++++|++|+| ++|++++..|..|..+++|+
T Consensus 329 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 408 (680)
T 1ziw_A 329 KCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLE 408 (680)
T ss_dssp TTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred CCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCC
Confidence 66666666666666655555555555554444 45566666778888889999
Q ss_pred EEEecCCCCCCCCc-ccccCCCCCCeEEccCCCCCCCCchhhcCCCCCCEEEccCccCC--CCCchhhhcCCCCCceecc
Q 038019 189 TLWASDNPFTGKIP-DFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLESLQMSDIYNV--SSSLDFVMSLKNLTDLSLR 265 (866)
Q Consensus 189 ~L~L~~N~l~~~~p-~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~n~~~--~~~~~~~~~l~~L~~L~L~ 265 (866)
.|+|++|.+++.+| ..+.++++|++|++++|++.+..+..|..+++|+.|++++|.+. ...+..+..+++|+.|+|+
T Consensus 409 ~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls 488 (680)
T 1ziw_A 409 VLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLS 488 (680)
T ss_dssp EEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECC
T ss_pred EEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECC
Confidence 99999998887655 67888888999999998888777778888888888888887765 2334567778888888888
Q ss_pred CcccccCCCcccCCCCCcCEEeeecCcCcccCC--------cccCCCCCCcEEECcCCCCcccCCcc---cCCCCCEEEe
Q 038019 266 NALITGTIPFGIGELQMLQILDLSFNNLTGQIP--------ATLFNIDSLEYLFLGNNSLSGTLPDQ---KSENLQKIDL 334 (866)
Q Consensus 266 ~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p--------~~l~~l~~L~~L~L~~N~l~g~~p~~---~~~~L~~L~L 334 (866)
+|.+++..+..|..+++|+.|++++|++++..+ ..+..+++|++|+|++|+++ .+|.. ..++|+.|+|
T Consensus 489 ~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~-~i~~~~~~~l~~L~~L~L 567 (680)
T 1ziw_A 489 NNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFD-EIPVEVFKDLFELKIIDL 567 (680)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEEC
T ss_pred CCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCC-CCCHHHcccccCcceeEC
Confidence 888887777777888888888888888875422 23677788888888888887 34432 2367888888
Q ss_pred eCCCCCCccCcccc--ccc-cccccccccccc
Q 038019 335 SHNHLSGTFPLWVN--SEL-QMNLAVNNFKFD 363 (866)
Q Consensus 335 s~N~l~g~~p~~~~--~~~-~l~l~~N~~~~~ 363 (866)
++|++++..+..+. ..+ .|++++|.+++.
T Consensus 568 s~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~ 599 (680)
T 1ziw_A 568 GLNNLNTLPASVFNNQVSLKSLNLQKNLITSV 599 (680)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECTTSCCCBC
T ss_pred CCCCCCcCCHhHhCCCCCCCEEECCCCcCCcc
Confidence 88888855444333 223 378888877654
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.2e-28 Score=267.69 Aligned_cols=267 Identities=17% Similarity=0.189 Sum_probs=234.2
Q ss_pred eeEEEEEEcccCcCCCCCcccCCCCCCCEEEccCCCCCCCCCccccCCCCcCEEeccCCcCCCCCCccccCCCCCCEeec
Q 038019 65 CHITKLRVYGLNKKGVIPEELVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKELTVLAF 144 (866)
Q Consensus 65 ~~v~~L~l~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 144 (866)
.+++.|++++|++++..+..|.++++|++|+|++|.+++..|..|.++++|++|+|++|+++ .+|..+. ++|++|++
T Consensus 52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~l 128 (330)
T 1xku_A 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELRV 128 (330)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCC--TTCCEEEC
T ss_pred CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhc--ccccEEEC
Confidence 57899999999999988889999999999999999999888999999999999999999998 5676665 79999999
Q ss_pred cCCCCCCCCchhhcCCCCccEEEeecCCCCC--CChhhhhcCcCCCEEEecCCCCCCCCcccccCCCCCCeEEccCCCCC
Q 038019 145 GTNNFSGALPPELGNLAKLEQLYIDSCGAGG--EIPSTFAKLRNMQTLWASDNPFTGKIPDFIGNWTKLKSLRFQGNSFQ 222 (866)
Q Consensus 145 s~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~--~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~ 222 (866)
++|.+++..+..+.++++|+.|+|++|.+.. ..+..|.++++|++|++++|.++. +|..+. ++|++|++++|.++
T Consensus 129 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~l~ 205 (330)
T 1xku_A 129 HENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGLP--PSLTELHLDGNKIT 205 (330)
T ss_dssp CSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CCSSCC--TTCSEEECTTSCCC
T ss_pred CCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc-CCcccc--ccCCEEECCCCcCC
Confidence 9999998888889999999999999999964 778899999999999999999984 565554 79999999999999
Q ss_pred CCCchhhcCCCCCCEEEccCccCCCCCchhhhcCCCCCceeccCcccccCCCcccCCCCCcCEEeeecCcCcccCCcccC
Q 038019 223 GPIPSSLSKLASLESLQMSDIYNVSSSLDFVMSLKNLTDLSLRNALITGTIPFGIGELQMLQILDLSFNNLTGQIPATLF 302 (866)
Q Consensus 223 ~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~ 302 (866)
+..+..|.++++|+.|++++|.+.......+..+++|+.|+|++|.++ .+|..+..+++|+.|++++|++++..+..|.
T Consensus 206 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~ 284 (330)
T 1xku_A 206 KVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFC 284 (330)
T ss_dssp EECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSS
T ss_pred ccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcC
Confidence 988999999999999999999998777778899999999999999998 7788899999999999999999987776665
Q ss_pred C------CCCCcEEECcCCCCcc-cCC-ccc--CCCCCEEEeeCCC
Q 038019 303 N------IDSLEYLFLGNNSLSG-TLP-DQK--SENLQKIDLSHNH 338 (866)
Q Consensus 303 ~------l~~L~~L~L~~N~l~g-~~p-~~~--~~~L~~L~Ls~N~ 338 (866)
. .+.|+.|++++|.+.. .++ ... ...++.++|++|+
T Consensus 285 ~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 285 PPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp CSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred CcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 3 4789999999999973 233 222 3678999999885
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.96 E-value=3e-28 Score=266.85 Aligned_cols=267 Identities=20% Similarity=0.214 Sum_probs=234.5
Q ss_pred eeeEEEEEEcccCcCCCCCcccCCCCCCCEEEccCCCCCCCCCccccCCCCcCEEeccCCcCCCCCCccccCCCCCCEee
Q 038019 64 TCHITKLRVYGLNKKGVIPEELVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKELTVLA 143 (866)
Q Consensus 64 ~~~v~~L~l~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 143 (866)
..+++.|++++|++++..|..|.++++|++|+|++|.+++..|..|+++++|++|+|++|+++ .+|..+. ++|++|+
T Consensus 53 ~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~ 129 (332)
T 2ft3_A 53 SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELR 129 (332)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSCC--TTCCEEE
T ss_pred CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCcccc--ccCCEEE
Confidence 357899999999999888889999999999999999999888999999999999999999998 6676665 8999999
Q ss_pred ccCCCCCCCCchhhcCCCCccEEEeecCCCC--CCChhhhhcCcCCCEEEecCCCCCCCCcccccCCCCCCeEEccCCCC
Q 038019 144 FGTNNFSGALPPELGNLAKLEQLYIDSCGAG--GEIPSTFAKLRNMQTLWASDNPFTGKIPDFIGNWTKLKSLRFQGNSF 221 (866)
Q Consensus 144 Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~--~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l 221 (866)
|++|.++...+..+..+++|++|++++|.++ +..+..+..+ +|++|++++|++++ +|..+. ++|++|+|++|.+
T Consensus 130 l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i 205 (332)
T 2ft3_A 130 IHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG-IPKDLP--ETLNELHLDHNKI 205 (332)
T ss_dssp CCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-CCSSSC--SSCSCCBCCSSCC
T ss_pred CCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc-cCcccc--CCCCEEECCCCcC
Confidence 9999999887778999999999999999996 4778888888 99999999999985 666554 7899999999999
Q ss_pred CCCCchhhcCCCCCCEEEccCccCCCCCchhhhcCCCCCceeccCcccccCCCcccCCCCCcCEEeeecCcCcccCCccc
Q 038019 222 QGPIPSSLSKLASLESLQMSDIYNVSSSLDFVMSLKNLTDLSLRNALITGTIPFGIGELQMLQILDLSFNNLTGQIPATL 301 (866)
Q Consensus 222 ~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l 301 (866)
++..+..|.++++|+.|++++|.+.......+..+++|+.|+|++|.++ .+|..+..+++|+.|++++|++++..+..+
T Consensus 206 ~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~ 284 (332)
T 2ft3_A 206 QAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDF 284 (332)
T ss_dssp CCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSS
T ss_pred CccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHc
Confidence 9888899999999999999999998887778999999999999999998 778889999999999999999998777766
Q ss_pred CC------CCCCcEEECcCCCCc--ccCCccc--CCCCCEEEeeCCC
Q 038019 302 FN------IDSLEYLFLGNNSLS--GTLPDQK--SENLQKIDLSHNH 338 (866)
Q Consensus 302 ~~------l~~L~~L~L~~N~l~--g~~p~~~--~~~L~~L~Ls~N~ 338 (866)
.. .++|+.|++++|.+. +..|... .+.|+.+++++|+
T Consensus 285 ~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 285 CPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp SCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred cccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 65 367999999999997 3444332 3789999999885
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.6e-28 Score=272.39 Aligned_cols=268 Identities=19% Similarity=0.180 Sum_probs=229.7
Q ss_pred eeEEEEEEcccCcCCCCCcccCCCCCCCEEEccCCCCCCCCCccccCCCCcCEEeccCCcCCCCCCccccCCCCCCEeec
Q 038019 65 CHITKLRVYGLNKKGVIPEELVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKELTVLAF 144 (866)
Q Consensus 65 ~~v~~L~l~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 144 (866)
.+++.|++++|.+++..+..|..+++|++|+|++|.+++..|..|+++++|++|+|++|+++...+..|.++++|++|+|
T Consensus 69 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 148 (390)
T 3o6n_A 69 RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSM 148 (390)
T ss_dssp CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred ccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEEC
Confidence 57999999999999888889999999999999999999888888999999999999999999655556799999999999
Q ss_pred cCCCCCCCCchhhcCCCCccEEEeecCCCCCCChhhhhcCcCCCEEEecC-------------------CCCCCCCcccc
Q 038019 145 GTNNFSGALPPELGNLAKLEQLYIDSCGAGGEIPSTFAKLRNMQTLWASD-------------------NPFTGKIPDFI 205 (866)
Q Consensus 145 s~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~-------------------N~l~~~~p~~l 205 (866)
++|.+++..+..+..+++|++|+|++|.+++.. +..+++|++|++++ |.++.. |..
T Consensus 149 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~-~~~- 223 (390)
T 3o6n_A 149 SNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVV-RGP- 223 (390)
T ss_dssp CSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC---GGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEE-ECC-
T ss_pred CCCccCccChhhccCCCCCCEEECCCCcCCccc---cccccccceeecccccccccCCCCcceEEECCCCeeeec-ccc-
Confidence 999999888889999999999999999998764 34445555555544 444422 222
Q ss_pred cCCCCCCeEEccCCCCCCCCchhhcCCCCCCEEEccCccCCCCCchhhhcCCCCCceeccCcccccCCCcccCCCCCcCE
Q 038019 206 GNWTKLKSLRFQGNSFQGPIPSSLSKLASLESLQMSDIYNVSSSLDFVMSLKNLTDLSLRNALITGTIPFGIGELQMLQI 285 (866)
Q Consensus 206 ~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 285 (866)
..++|+.|++++|.+++. ..+..+++|+.|++++|.+....+..+..+++|+.|+|++|.+++ ++..+..+++|+.
T Consensus 224 -~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~ 299 (390)
T 3o6n_A 224 -VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKV 299 (390)
T ss_dssp -CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCE
T ss_pred -ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCE
Confidence 246899999999999864 578999999999999999887777889999999999999999986 4666788999999
Q ss_pred EeeecCcCcccCCcccCCCCCCcEEECcCCCCcccCCcccCCCCCEEEeeCCCCCCcc
Q 038019 286 LDLSFNNLTGQIPATLFNIDSLEYLFLGNNSLSGTLPDQKSENLQKIDLSHNHLSGTF 343 (866)
Q Consensus 286 L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~~p~~~~~~L~~L~Ls~N~l~g~~ 343 (866)
|+|++|+++ .+|..+..+++|++|+|++|+++.. +....++|+.|++++|++++.-
T Consensus 300 L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~~~~~~~L~~L~l~~N~~~~~~ 355 (390)
T 3o6n_A 300 LDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-KLSTHHTLKNLTLSHNDWDCNS 355 (390)
T ss_dssp EECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-CCCTTCCCSEEECCSSCEEHHH
T ss_pred EECCCCcce-ecCccccccCcCCEEECCCCcccee-CchhhccCCEEEcCCCCccchh
Confidence 999999998 5677788899999999999999854 5556789999999999998753
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.3e-27 Score=274.25 Aligned_cols=289 Identities=26% Similarity=0.325 Sum_probs=221.0
Q ss_pred eeEEEEEEcccCcCCCCCcccCCCCCCCEEEccCCCCCCCCCccccCCCCcCEEeccCCcCCCCCCccccCCCCCCEeec
Q 038019 65 CHITKLRVYGLNKKGVIPEELVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKELTVLAF 144 (866)
Q Consensus 65 ~~v~~L~l~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 144 (866)
.+++.|++++|.+++..+ +.++++|++|+|++|.+++..+ ++++++|++|+|++|.+++..+ +.++++|++|+|
T Consensus 68 ~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l 141 (466)
T 1o6v_A 68 NNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLEL 141 (466)
T ss_dssp TTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEEE
T ss_pred cCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCCCChH--HcCCCCCCEEEC
Confidence 478888998888887654 8888899999999998886544 8888999999999998886433 888889999999
Q ss_pred cCCCCCCCCchhhcCCCCccEEEeecCCCCCCChhhhhcCcCCCEEEecCCCCCCCCcccccCCCCCCeEEccCCCCCCC
Q 038019 145 GTNNFSGALPPELGNLAKLEQLYIDSCGAGGEIPSTFAKLRNMQTLWASDNPFTGKIPDFIGNWTKLKSLRFQGNSFQGP 224 (866)
Q Consensus 145 s~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ 224 (866)
++|.+++. + .++.+++|++|+++ |.+.+.. .+.++++|++|++++|.+++. ..+..+++|++|++++|.+.+.
T Consensus 142 ~~n~l~~~-~-~~~~l~~L~~L~l~-~~~~~~~--~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~ 214 (466)
T 1o6v_A 142 SSNTISDI-S-ALSGLTSLQQLSFG-NQVTDLK--PLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDI 214 (466)
T ss_dssp EEEEECCC-G-GGTTCTTCSEEEEE-ESCCCCG--GGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCC
T ss_pred CCCccCCC-h-hhccCCcccEeecC-CcccCch--hhccCCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccc
Confidence 98888753 3 47788888888886 4444433 288888999999999988754 3477888999999999988866
Q ss_pred CchhhcCCCCCCEEEccCccCCCCCchhhhcCCCCCceeccCcccccCCCcccCCCCCcCEEeeecCcCcccCCcccCCC
Q 038019 225 IPSSLSKLASLESLQMSDIYNVSSSLDFVMSLKNLTDLSLRNALITGTIPFGIGELQMLQILDLSFNNLTGQIPATLFNI 304 (866)
Q Consensus 225 ~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l 304 (866)
.+ ++.+++|+.|++++|.+... +.+..+++|+.|++++|.+++..+ +..+++|+.|++++|.+++..+ +..+
T Consensus 215 ~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l 286 (466)
T 1o6v_A 215 TP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGL 286 (466)
T ss_dssp GG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTC
T ss_pred cc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCC
Confidence 55 77788899999988877643 467788888889998888887655 7788888888888888886544 7788
Q ss_pred CCCcEEECcCCCCcccCCcccCCCCCEEEeeCCCCCCccCccccccc-cccccccccccccCCCccCCCccc
Q 038019 305 DSLEYLFLGNNSLSGTLPDQKSENLQKIDLSHNHLSGTFPLWVNSEL-QMNLAVNNFKFDISNISVFPGLNC 375 (866)
Q Consensus 305 ~~L~~L~L~~N~l~g~~p~~~~~~L~~L~Ls~N~l~g~~p~~~~~~~-~l~l~~N~~~~~~~~~~~~p~l~~ 375 (866)
++|+.|+|++|++++..+...+++|+.|+|++|++++..|......+ .|++++|.+.+. ..+..++.|..
T Consensus 287 ~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~ 357 (466)
T 1o6v_A 287 TALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDV-SSLANLTNINW 357 (466)
T ss_dssp TTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSCCGGGGGCTTCCEEECCSSCCCCC-GGGTTCTTCCE
T ss_pred CccCeEEcCCCcccCchhhcCCCCCCEEECcCCcCCCchhhccCccCCEeECCCCccCCc-hhhccCCCCCE
Confidence 88888888888888766655567888888888888887763322333 388888887754 33334444433
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.5e-27 Score=262.80 Aligned_cols=291 Identities=23% Similarity=0.297 Sum_probs=195.1
Q ss_pred eeEEEEEEcccCcCCCCCcccCCCCCCCEEEccCCCCCCCCCccccCCCCcCEEeccCCcCCCCCCccccCCCCCCEeec
Q 038019 65 CHITKLRVYGLNKKGVIPEELVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKELTVLAF 144 (866)
Q Consensus 65 ~~v~~L~l~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 144 (866)
.+++.|++.++.+.. ++ .+..+++|++|+|++|.+++. +. +.++++|++|+|++|.++. + +.|.++++|++|+|
T Consensus 44 ~~L~~L~l~~~~i~~-~~-~~~~~~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~L~~n~i~~-~-~~~~~l~~L~~L~l 117 (347)
T 4fmz_A 44 ESITKLVVAGEKVAS-IQ-GIEYLTNLEYLNLNGNQITDI-SP-LSNLVKLTNLYIGTNKITD-I-SALQNLTNLRELYL 117 (347)
T ss_dssp TTCSEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCSEEEC
T ss_pred ccccEEEEeCCcccc-ch-hhhhcCCccEEEccCCccccc-hh-hhcCCcCCEEEccCCcccC-c-hHHcCCCcCCEEEC
Confidence 356777777777654 33 377777777777777777643 33 7777777777777777764 3 35777777777777
Q ss_pred cCCCCCCCCchhhcCCCCccEEEeecCCCCCCChhhhhcCcCCCEEEecCCCCCCCCcccccCCCCCCeEEccCCCCCCC
Q 038019 145 GTNNFSGALPPELGNLAKLEQLYIDSCGAGGEIPSTFAKLRNMQTLWASDNPFTGKIPDFIGNWTKLKSLRFQGNSFQGP 224 (866)
Q Consensus 145 s~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ 224 (866)
++|.+++..+ +..+++|+.|++++|.....++. +..+++|++|++++|.+.+..+ +..+++|+.|++++|.+.+.
T Consensus 118 ~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~ 192 (347)
T 4fmz_A 118 NEDNISDISP--LANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDI 192 (347)
T ss_dssp TTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCC
T ss_pred cCCcccCchh--hccCCceeEEECCCCCCcccccc-hhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccccc
Confidence 7777775432 77777777777777765554444 7777777777777777765433 66777777777777777644
Q ss_pred CchhhcCCCCCCEEEccCccCCCCCchhhhcCCCCCceeccCcccccCCCcccCCCCCcCEEeeecCcCcccCCcccCCC
Q 038019 225 IPSSLSKLASLESLQMSDIYNVSSSLDFVMSLKNLTDLSLRNALITGTIPFGIGELQMLQILDLSFNNLTGQIPATLFNI 304 (866)
Q Consensus 225 ~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l 304 (866)
.+ +..+++|+.|++++|.+..... +..+++|+.|++++|.+++..+ +..+++|+.|++++|.+++. ..+..+
T Consensus 193 ~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l 264 (347)
T 4fmz_A 193 SP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAVKDL 264 (347)
T ss_dssp GG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTC
T ss_pred cc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--hhHhcC
Confidence 32 6777777777777776654332 6667777777777777775443 67777777777777777653 456777
Q ss_pred CCCcEEECcCCCCcccCCcccCCCCCEEEeeCCCCCCccCccccc--cc-cccccccccccccCCCccCCCccc
Q 038019 305 DSLEYLFLGNNSLSGTLPDQKSENLQKIDLSHNHLSGTFPLWVNS--EL-QMNLAVNNFKFDISNISVFPGLNC 375 (866)
Q Consensus 305 ~~L~~L~L~~N~l~g~~p~~~~~~L~~L~Ls~N~l~g~~p~~~~~--~~-~l~l~~N~~~~~~~~~~~~p~l~~ 375 (866)
++|++|++++|++++.......++|+.|++++|++++..|..+.. .+ .|++++|.++...+ +..++.+..
T Consensus 265 ~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~ 337 (347)
T 4fmz_A 265 TKLKMLNVGSNQISDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP-LASLSKMDS 337 (347)
T ss_dssp TTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG-GGGCTTCSE
T ss_pred CCcCEEEccCCccCCChhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC-hhhhhccce
Confidence 777777777777775422233467777777777777766655442 22 37777777765433 333444433
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.5e-28 Score=287.78 Aligned_cols=284 Identities=17% Similarity=0.141 Sum_probs=249.8
Q ss_pred eeEEEEEEcccCcCCCCCcccCCCCCCCEEEccCCCCCCCCCccccCCCCcCEEeccCCcCCCCCCccccCCCCCCEeec
Q 038019 65 CHITKLRVYGLNKKGVIPEELVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKELTVLAF 144 (866)
Q Consensus 65 ~~v~~L~l~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 144 (866)
.+++.|++++|.+++..|..|..+++|++|+|++|.+++..|..|+++++|++|+|++|.|++..+..|+++++|++|+|
T Consensus 75 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 154 (597)
T 3oja_B 75 RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSM 154 (597)
T ss_dssp CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEe
Confidence 57999999999999988889999999999999999999988888999999999999999999766667899999999999
Q ss_pred cCCCCCCCCchhhcCCCCccEEEeecCCCCCCChhhhhcCcCCCEEEecCCCCCCCCcccccCCCCCCeEEccCCCCCCC
Q 038019 145 GTNNFSGALPPELGNLAKLEQLYIDSCGAGGEIPSTFAKLRNMQTLWASDNPFTGKIPDFIGNWTKLKSLRFQGNSFQGP 224 (866)
Q Consensus 145 s~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ 224 (866)
++|.+++..|..|+.+++|++|+|++|.+++.. +..+++|+.|++++|.+++ +...++|+.|++++|.+...
T Consensus 155 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~~-----l~~~~~L~~L~ls~n~l~~~ 226 (597)
T 3oja_B 155 SNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSINVV 226 (597)
T ss_dssp CSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCCSE-----EECCTTCSEEECCSSCCCEE
T ss_pred eCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCcccc-----ccCCchhheeeccCCccccc
Confidence 999999999999999999999999999998763 5678999999999999874 34567899999999999854
Q ss_pred CchhhcCCCCCCEEEccCccCCCCCchhhhcCCCCCceeccCcccccCCCcccCCCCCcCEEeeecCcCcccCCcccCCC
Q 038019 225 IPSSLSKLASLESLQMSDIYNVSSSLDFVMSLKNLTDLSLRNALITGTIPFGIGELQMLQILDLSFNNLTGQIPATLFNI 304 (866)
Q Consensus 225 ~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l 304 (866)
.+. + .++|+.|+|++|.+.. ...+..+++|+.|+|++|.+++..|..|+.+++|+.|+|++|.+++ +|..+..+
T Consensus 227 ~~~-~--~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l 300 (597)
T 3oja_B 227 RGP-V--NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPI 300 (597)
T ss_dssp ECS-C--CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCC
T ss_pred ccc-c--CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccC
Confidence 322 2 3689999999998875 3678899999999999999999999999999999999999999986 57777889
Q ss_pred CCCcEEECcCCCCcccCCccc--CCCCCEEEeeCCCCCCccCccccccccccccccccccc
Q 038019 305 DSLEYLFLGNNSLSGTLPDQK--SENLQKIDLSHNHLSGTFPLWVNSELQMNLAVNNFKFD 363 (866)
Q Consensus 305 ~~L~~L~L~~N~l~g~~p~~~--~~~L~~L~Ls~N~l~g~~p~~~~~~~~l~l~~N~~~~~ 363 (866)
++|+.|+|++|.+++ +|... +++|+.|+|++|++++..+..+.....|++++|++.|+
T Consensus 301 ~~L~~L~Ls~N~l~~-i~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~L~~L~l~~N~~~~~ 360 (597)
T 3oja_B 301 PTLKVLDLSHNHLLH-VERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLTLSHNDWDCN 360 (597)
T ss_dssp TTCCEEECCSSCCCC-CGGGHHHHTTCSEEECCSSCCCCCCCCTTCCCSEEECCSSCEEHH
T ss_pred CCCcEEECCCCCCCc-cCcccccCCCCCEEECCCCCCCCcChhhcCCCCEEEeeCCCCCCh
Confidence 999999999999994 55433 48999999999999977544444444599999999876
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.2e-27 Score=261.55 Aligned_cols=279 Identities=25% Similarity=0.324 Sum_probs=236.7
Q ss_pred eeeEEEEEEcccCcCCCCCcccCCCCCCCEEEccCCCCCCCCCccccCCCCcCEEeccCCcCCCCCCccccCCCCCCEee
Q 038019 64 TCHITKLRVYGLNKKGVIPEELVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKELTVLA 143 (866)
Q Consensus 64 ~~~v~~L~l~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 143 (866)
..++++|++++|.+++..+ +..+++|++|+|++|.++. ++ .+.++++|++|+|++|.+++. +. +..+++|++|+
T Consensus 65 ~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~-~~-~~~~l~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~ 138 (347)
T 4fmz_A 65 LTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITD-IS-ALQNLTNLRELYLNEDNISDI-SP-LANLTKMYSLN 138 (347)
T ss_dssp CTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-CG-GGTTCTTCSEEECTTSCCCCC-GG-GTTCTTCCEEE
T ss_pred cCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccC-ch-HHcCCCcCCEEECcCCcccCc-hh-hccCCceeEEE
Confidence 3579999999999986544 9999999999999999985 44 699999999999999999854 33 99999999999
Q ss_pred ccCCCCCCCCchhhcCCCCccEEEeecCCCCCCChhhhhcCcCCCEEEecCCCCCCCCcccccCCCCCCeEEccCCCCCC
Q 038019 144 FGTNNFSGALPPELGNLAKLEQLYIDSCGAGGEIPSTFAKLRNMQTLWASDNPFTGKIPDFIGNWTKLKSLRFQGNSFQG 223 (866)
Q Consensus 144 Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~ 223 (866)
+++|.....++ .+..+++|++|++++|.+.+..+ +..+++|++|++++|.+++..+ +..+++|+.|++++|.+.+
T Consensus 139 l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~ 213 (347)
T 4fmz_A 139 LGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITD 213 (347)
T ss_dssp CTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC
T ss_pred CCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCC
Confidence 99997765554 49999999999999999987655 8899999999999999986443 8889999999999999986
Q ss_pred CCchhhcCCCCCCEEEccCccCCCCCchhhhcCCCCCceeccCcccccCCCcccCCCCCcCEEeeecCcCcccCCcccCC
Q 038019 224 PIPSSLSKLASLESLQMSDIYNVSSSLDFVMSLKNLTDLSLRNALITGTIPFGIGELQMLQILDLSFNNLTGQIPATLFN 303 (866)
Q Consensus 224 ~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~ 303 (866)
..+ +..+++|+.|++++|.+..... +..+++|+.|++++|.+++. ..+..+++|+.|++++|.+++. ..+..
T Consensus 214 ~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~ 285 (347)
T 4fmz_A 214 ITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNN 285 (347)
T ss_dssp CGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGG
T ss_pred Cch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcC
Confidence 544 8899999999999998875543 88899999999999999864 4688999999999999999864 45888
Q ss_pred CCCCcEEECcCCCCcccCCcc--cCCCCCEEEeeCCCCCCccCccccccc-cccccccccc
Q 038019 304 IDSLEYLFLGNNSLSGTLPDQ--KSENLQKIDLSHNHLSGTFPLWVNSEL-QMNLAVNNFK 361 (866)
Q Consensus 304 l~~L~~L~L~~N~l~g~~p~~--~~~~L~~L~Ls~N~l~g~~p~~~~~~~-~l~l~~N~~~ 361 (866)
+++|+.|++++|++++..|.. ..++|+.|++++|++++..|......+ .+++++|.++
T Consensus 286 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 286 LSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRPLASLSKMDSADFANQVIK 346 (347)
T ss_dssp CTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGGGGGCTTCSEESSSCC---
T ss_pred CCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccChhhhhccceeehhhhccc
Confidence 999999999999999776653 358999999999999998883322333 4899998874
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=5.7e-28 Score=284.80 Aligned_cols=302 Identities=20% Similarity=0.178 Sum_probs=224.3
Q ss_pred eeEEEEEEcccCcCCCCCcccCCCCCCCEEEccCCCCCCCCCccccCCCCcCEEeccCCcCCCCCCccccCCCCCCEeec
Q 038019 65 CHITKLRVYGLNKKGVIPEELVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKELTVLAF 144 (866)
Q Consensus 65 ~~v~~L~l~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 144 (866)
.+++.|++++|++++..|..|.++++|++|+|++|.+++..|..|+++++|++|+|++|++++..+..|+++++|++|+|
T Consensus 52 ~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 131 (570)
T 2z63_A 52 PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNV 131 (570)
T ss_dssp SSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEEC
T ss_pred CCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccccEEec
Confidence 45666777776666666666666777777777777666655666666666666666666666544445666667777777
Q ss_pred cCCCCCC-CCchhhcCCCCccEEEeecCCCCCCChhhhh-----------------------------------------
Q 038019 145 GTNNFSG-ALPPELGNLAKLEQLYIDSCGAGGEIPSTFA----------------------------------------- 182 (866)
Q Consensus 145 s~N~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~----------------------------------------- 182 (866)
++|.+++ .+|..|+++++|++|++++|.+++..+..|.
T Consensus 132 ~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~ 211 (570)
T 2z63_A 132 AHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNF 211 (570)
T ss_dssp CSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCC
T ss_pred CCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhccCcceeEeccccc
Confidence 7766665 3566666677777766666655443322211
Q ss_pred --------------------------------------------------------------------------------
Q 038019 183 -------------------------------------------------------------------------------- 182 (866)
Q Consensus 183 -------------------------------------------------------------------------------- 182 (866)
T Consensus 212 ~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~ 291 (570)
T 2z63_A 212 DSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVS 291 (570)
T ss_dssp SCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEES
T ss_pred ccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecC
Confidence
Q ss_pred -----------------------------------------------------cCcCCCEEEecCCCCCCCC--cccccC
Q 038019 183 -----------------------------------------------------KLRNMQTLWASDNPFTGKI--PDFIGN 207 (866)
Q Consensus 183 -----------------------------------------------------~l~~L~~L~L~~N~l~~~~--p~~l~~ 207 (866)
.+++|++|++++|.+++.. +..+..
T Consensus 292 ~~l~~l~~~~~~~~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~ 371 (570)
T 2z63_A 292 VTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFG 371 (570)
T ss_dssp CEECSCCBCCSCCCCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSCCBEEEEEEHHHHT
T ss_pred ccchhhhhhhccCCccEEeeccCcccccCcccccccCEEeCcCCccccccccccCCCCCEEeCcCCccCccccccccccc
Confidence 1223333334444433221 456778
Q ss_pred CCCCCeEEccCCCCCCCCchhhcCCCCCCEEEccCccCCCCCc-hhhhcCCCCCceeccCcccccCCCcccCCCCCcCEE
Q 038019 208 WTKLKSLRFQGNSFQGPIPSSLSKLASLESLQMSDIYNVSSSL-DFVMSLKNLTDLSLRNALITGTIPFGIGELQMLQIL 286 (866)
Q Consensus 208 l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 286 (866)
+++|++|++++|.+.+..+. +..+++|+.|++++|.+..... ..+..+++|+.|++++|.+.+..|..+..+++|+.|
T Consensus 372 ~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 450 (570)
T 2z63_A 372 TTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVL 450 (570)
T ss_dssp CSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEE
T ss_pred cCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEE
Confidence 99999999999999865544 9999999999999998875543 568889999999999999999999999999999999
Q ss_pred eeecCcCc-ccCCcccCCCCCCcEEECcCCCCcccCCccc--CCCCCEEEeeCCCCCCccCccccc--cc-ccccccccc
Q 038019 287 DLSFNNLT-GQIPATLFNIDSLEYLFLGNNSLSGTLPDQK--SENLQKIDLSHNHLSGTFPLWVNS--EL-QMNLAVNNF 360 (866)
Q Consensus 287 ~Ls~N~l~-~~~p~~l~~l~~L~~L~L~~N~l~g~~p~~~--~~~L~~L~Ls~N~l~g~~p~~~~~--~~-~l~l~~N~~ 360 (866)
++++|.++ +.+|..+..+++|++|+|++|++++..|... .++|+.|++++|++++..|..+.. .+ .+++++|++
T Consensus 451 ~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~ 530 (570)
T 2z63_A 451 KMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPW 530 (570)
T ss_dssp ECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred ECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcc
Confidence 99999998 5789999999999999999999998877654 479999999999999988776643 23 499999999
Q ss_pred ccccCCC
Q 038019 361 KFDISNI 367 (866)
Q Consensus 361 ~~~~~~~ 367 (866)
.|+++..
T Consensus 531 ~~~~~~~ 537 (570)
T 2z63_A 531 DCSCPRI 537 (570)
T ss_dssp CCCTTTT
T ss_pred cCCCcch
Confidence 9885543
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
Probab=99.95 E-value=2.6e-27 Score=271.90 Aligned_cols=290 Identities=28% Similarity=0.321 Sum_probs=242.1
Q ss_pred eeEEEEEEcccCcCCCCCcccCCCCCCCEEEccCCCCCCCCCccccCCCCcCEEeccCCcCCCCCCccccCCCCCCEeec
Q 038019 65 CHITKLRVYGLNKKGVIPEELVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKELTVLAF 144 (866)
Q Consensus 65 ~~v~~L~l~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 144 (866)
.+++.|++.++.+.. +| .+..+++|++|+|++|.+++..+ +.++++|++|+|++|.+++..+ ++++++|++|+|
T Consensus 46 ~~l~~L~l~~~~i~~-l~-~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L 119 (466)
T 1o6v_A 46 DQVTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTL 119 (466)
T ss_dssp HTCCEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEEC
T ss_pred ccccEEecCCCCCcc-Cc-chhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEEEC
Confidence 478999999998875 55 48899999999999999986544 9999999999999999996555 999999999999
Q ss_pred cCCCCCCCCchhhcCCCCccEEEeecCCCCCCChhhhhcCcCCCEEEecCCCCCCCCcccccCCCCCCeEEccCCCCCCC
Q 038019 145 GTNNFSGALPPELGNLAKLEQLYIDSCGAGGEIPSTFAKLRNMQTLWASDNPFTGKIPDFIGNWTKLKSLRFQGNSFQGP 224 (866)
Q Consensus 145 s~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ 224 (866)
++|.+++..+ +.++++|++|+|++|.+++. + .+..+++|++|+++ |.+.+.. .+.++++|+.|++++|.+.+.
T Consensus 120 ~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~-~~~~l~~L~~L~l~-~~~~~~~--~~~~l~~L~~L~l~~n~l~~~ 192 (466)
T 1o6v_A 120 FNNQITDIDP--LKNLTNLNRLELSSNTISDI-S-ALSGLTSLQQLSFG-NQVTDLK--PLANLTTLERLDISSNKVSDI 192 (466)
T ss_dssp CSSCCCCCGG--GTTCTTCSEEEEEEEEECCC-G-GGTTCTTCSEEEEE-ESCCCCG--GGTTCTTCCEEECCSSCCCCC
T ss_pred CCCCCCCChH--HcCCCCCCEEECCCCccCCC-h-hhccCCcccEeecC-CcccCch--hhccCCCCCEEECcCCcCCCC
Confidence 9999987643 99999999999999998874 3 48999999999997 5565443 389999999999999999854
Q ss_pred CchhhcCCCCCCEEEccCccCCCCCchhhhcCCCCCceeccCcccccCCCcccCCCCCcCEEeeecCcCcccCCcccCCC
Q 038019 225 IPSSLSKLASLESLQMSDIYNVSSSLDFVMSLKNLTDLSLRNALITGTIPFGIGELQMLQILDLSFNNLTGQIPATLFNI 304 (866)
Q Consensus 225 ~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l 304 (866)
..+..+++|+.|++++|.+..... +..+++|+.|++++|.+++. ..+..+++|+.|++++|.+++..+ +..+
T Consensus 193 --~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l 264 (466)
T 1o6v_A 193 --SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGL 264 (466)
T ss_dssp --GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTC
T ss_pred --hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhcC
Confidence 458899999999999998765433 77899999999999999864 367889999999999999997655 8899
Q ss_pred CCCcEEECcCCCCcccCCcccCCCCCEEEeeCCCCCCccCccccccc-cccccccccccccCCCccCCCcccc
Q 038019 305 DSLEYLFLGNNSLSGTLPDQKSENLQKIDLSHNHLSGTFPLWVNSEL-QMNLAVNNFKFDISNISVFPGLNCL 376 (866)
Q Consensus 305 ~~L~~L~L~~N~l~g~~p~~~~~~L~~L~Ls~N~l~g~~p~~~~~~~-~l~l~~N~~~~~~~~~~~~p~l~~l 376 (866)
++|+.|++++|.+++..+....++|+.|++++|++++..|..-...+ .|++++|.+.+... +..++.|..+
T Consensus 265 ~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L 336 (466)
T 1o6v_A 265 TKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP-VSSLTKLQRL 336 (466)
T ss_dssp TTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSCCGG-GGGCTTCCEE
T ss_pred CCCCEEECCCCccCccccccCCCccCeEEcCCCcccCchhhcCCCCCCEEECcCCcCCCchh-hccCccCCEe
Confidence 99999999999999876655668999999999999987663222334 49999999886533 4445555433
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=9.1e-29 Score=273.36 Aligned_cols=267 Identities=21% Similarity=0.172 Sum_probs=214.1
Q ss_pred ccCcCCCCCcccCCCCCCCEEEccCCCCCCCCCccccCCCCcCEEeccCCcCCCCCCccccCCCCCCEeeccCCCCCCCC
Q 038019 74 GLNKKGVIPEELVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKELTVLAFGTNNFSGAL 153 (866)
Q Consensus 74 ~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~ 153 (866)
+++++ .+|..+. ++|++|+|++|.+++..+..|.++++|++|+|++|++++..|..|.++++|++|+|++|++++..
T Consensus 40 ~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 116 (353)
T 2z80_A 40 SGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLS 116 (353)
T ss_dssp STTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCC
T ss_pred CCCcc-ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCC
Confidence 44444 4565554 48889999998888766668888899999999999888877888888889999999999888665
Q ss_pred chhhcCCCCccEEEeecCCCCCCCh-hhhhcCcCCCEEEecCC-CCCCCCcccccCCCCCCeEEccCCCCCCCCchhhcC
Q 038019 154 PPELGNLAKLEQLYIDSCGAGGEIP-STFAKLRNMQTLWASDN-PFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSK 231 (866)
Q Consensus 154 p~~l~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~L~~N-~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~ 231 (866)
+..++++++|++|+|++|.++...+ ..|..+++|++|++++| .+++..+..+.++++|++|++++|.+.+..|..|.+
T Consensus 117 ~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~ 196 (353)
T 2z80_A 117 SSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKS 196 (353)
T ss_dssp HHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTT
T ss_pred HhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhc
Confidence 5568888899999998888886544 47888889999999888 466556778888888999999999888888888888
Q ss_pred CCCCCEEEccCccCCCCCchhhhcCCCCCceeccCcccccCCCccc---CCCCCcCEEeeecCcCcc----cCCcccCCC
Q 038019 232 LASLESLQMSDIYNVSSSLDFVMSLKNLTDLSLRNALITGTIPFGI---GELQMLQILDLSFNNLTG----QIPATLFNI 304 (866)
Q Consensus 232 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~---~~l~~L~~L~Ls~N~l~~----~~p~~l~~l 304 (866)
+++|+.|++++|.+.......+..+++|+.|++++|.+++..+..+ .....++.++|+++.+.+ .+|..+..+
T Consensus 197 l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l 276 (353)
T 2z80_A 197 IQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQI 276 (353)
T ss_dssp CSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTC
T ss_pred cccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcc
Confidence 8899999998888765444456678899999999999887655433 345778899999999876 467788899
Q ss_pred CCCcEEECcCCCCcccCCcc---cCCCCCEEEeeCCCCCCccC
Q 038019 305 DSLEYLFLGNNSLSGTLPDQ---KSENLQKIDLSHNHLSGTFP 344 (866)
Q Consensus 305 ~~L~~L~L~~N~l~g~~p~~---~~~~L~~L~Ls~N~l~g~~p 344 (866)
++|++|+|++|+++ .+|.. ..++|+.|+|++|++++..|
T Consensus 277 ~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 277 SGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp TTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred cCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 99999999999999 45554 34789999999999998876
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.1e-28 Score=266.97 Aligned_cols=247 Identities=23% Similarity=0.243 Sum_probs=165.1
Q ss_pred EEEEcccCcCCCCCcccCCCCCCCEEEccCCCCCCCCCccccCCCCcCEEeccCCcCCC--CCCccccCCCCCCEeeccC
Q 038019 69 KLRVYGLNKKGVIPEELVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSG--PVPRELGNLKELTVLAFGT 146 (866)
Q Consensus 69 ~L~l~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~--~~p~~l~~l~~L~~L~Ls~ 146 (866)
.+++.+++++ .+|..+. ++|++|+|++|.++...+..|.++++|++|+|++|.++. ..|..+..+++|++|+|++
T Consensus 11 ~l~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~ 87 (306)
T 2z66_A 11 EIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87 (306)
T ss_dssp EEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCS
T ss_pred EEEcCCCCcc-cCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCC
Confidence 3444444444 3454443 578899999998885555567888899999999988873 2366677788888888888
Q ss_pred CCCCCCCchhhcCCCCccEEEeecCCCCCCCh-hhhhcCcCCCEEEecCCCCCCCCcccccCCCCCCeEEccCCCCCC-C
Q 038019 147 NNFSGALPPELGNLAKLEQLYIDSCGAGGEIP-STFAKLRNMQTLWASDNPFTGKIPDFIGNWTKLKSLRFQGNSFQG-P 224 (866)
Q Consensus 147 N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~-~ 224 (866)
|.++ .+|..+..+++|++|+|++|.+++..+ ..+..+++|++|++++|.+++..+..+..+++|++|+|++|.+.+ .
T Consensus 88 n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 166 (306)
T 2z66_A 88 NGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF 166 (306)
T ss_dssp CSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGE
T ss_pred Cccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcccccc
Confidence 8887 466678888888888888888876655 567788888888888888877777777888888888888888775 4
Q ss_pred CchhhcCCCCCCEEEccCccCCCCCchhhhcCCCCCceeccCcccccCCCcccCCCCCcCEEeeecCcCcccCCcccCCC
Q 038019 225 IPSSLSKLASLESLQMSDIYNVSSSLDFVMSLKNLTDLSLRNALITGTIPFGIGELQMLQILDLSFNNLTGQIPATLFNI 304 (866)
Q Consensus 225 ~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l 304 (866)
+|..+..+++|+.|++++|.+....+..+..+++|+.|+|++|.+++..+..+..+++|+.|+|++|++++..|..+..+
T Consensus 167 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~ 246 (306)
T 2z66_A 167 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHF 246 (306)
T ss_dssp ECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCC
T ss_pred chhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhh
Confidence 56666666666666666655544444444455555555555555554444445555555555555555555555555444
Q ss_pred C-CCcEEECcCCCCcc
Q 038019 305 D-SLEYLFLGNNSLSG 319 (866)
Q Consensus 305 ~-~L~~L~L~~N~l~g 319 (866)
+ +|++|+|++|.+++
T Consensus 247 ~~~L~~L~L~~N~~~~ 262 (306)
T 2z66_A 247 PSSLAFLNLTQNDFAC 262 (306)
T ss_dssp CTTCCEEECTTCCEEC
T ss_pred hccCCEEEccCCCeec
Confidence 2 45555555554443
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.1e-27 Score=269.55 Aligned_cols=273 Identities=19% Similarity=0.127 Sum_probs=226.5
Q ss_pred eeEEEEEEcccCcCCCCCcccCCCCCCCEEEccCCCCCCCCCccccCCCCcCEEeccCCcCCCCCCccccCCCCCCEeec
Q 038019 65 CHITKLRVYGLNKKGVIPEELVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKELTVLAF 144 (866)
Q Consensus 65 ~~v~~L~l~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 144 (866)
.+++.|++++|++++. | .|..+++|++|+|++|.+++. | ++++++|++|+|++|++++. + ++++++|++|+|
T Consensus 42 ~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L 113 (457)
T 3bz5_A 42 ATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNC 113 (457)
T ss_dssp TTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEEC
T ss_pred CCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEEC
Confidence 4789999999999975 5 699999999999999999874 4 89999999999999999974 3 899999999999
Q ss_pred cCCCCCCCCchhhcCCCCccEEEeecCCCCCCChhhhhcCcCCCEEEecCCCCCCCCcccccCCCCCCeEEccCCCCCCC
Q 038019 145 GTNNFSGALPPELGNLAKLEQLYIDSCGAGGEIPSTFAKLRNMQTLWASDNPFTGKIPDFIGNWTKLKSLRFQGNSFQGP 224 (866)
Q Consensus 145 s~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ 224 (866)
++|++++. | ++.+++|++|++++|++++. + ++.+++|++|++++|...+.+ .+..+++|+.|++++|++++
T Consensus 114 ~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l-~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~- 184 (457)
T 3bz5_A 114 DTNKLTKL-D--VSQNPLLTYLNCARNTLTEI-D--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE- 184 (457)
T ss_dssp CSSCCSCC-C--CTTCTTCCEEECTTSCCSCC-C--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC-
T ss_pred CCCcCCee-c--CCCCCcCCEEECCCCcccee-c--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccce-
Confidence 99999974 4 89999999999999999885 3 889999999999999766666 47889999999999999997
Q ss_pred CchhhcCCCCCCEEEccCccCCCCCchhhhcCCCCCceeccCcccccCCCcccCCCCCcCEEeeecCcCcccCCcccCCC
Q 038019 225 IPSSLSKLASLESLQMSDIYNVSSSLDFVMSLKNLTDLSLRNALITGTIPFGIGELQMLQILDLSFNNLTGQIPATLFNI 304 (866)
Q Consensus 225 ~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l 304 (866)
+| +..+++|+.|++++|.+... .+..+++|+.|++++|.+++ +| ++.+++|+.|++++|++++..+..+..+
T Consensus 185 l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~~~~l~~L 256 (457)
T 3bz5_A 185 LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELDVSTLSKL 256 (457)
T ss_dssp CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCCCTTCTTC
T ss_pred ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcCHHHCCCC
Confidence 44 88899999999999988765 37788999999999999998 55 8899999999999999998765555544
Q ss_pred C-------CCcEEECcCCCCcccCCcccCCCCCEEEeeCCCCCCccCccccc----------cc-ccccccccccc
Q 038019 305 D-------SLEYLFLGNNSLSGTLPDQKSENLQKIDLSHNHLSGTFPLWVNS----------EL-QMNLAVNNFKF 362 (866)
Q Consensus 305 ~-------~L~~L~L~~N~l~g~~p~~~~~~L~~L~Ls~N~l~g~~p~~~~~----------~~-~l~l~~N~~~~ 362 (866)
. +|+.|++++|.+.+.+|...+++|+.|++++|.+.+.+|..... .+ .|++++|++++
T Consensus 257 ~~L~l~~n~L~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~ 332 (457)
T 3bz5_A 257 TTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTE 332 (457)
T ss_dssp CEEECTTCCCSCCCCTTCTTCCEEECTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSC
T ss_pred CEEeccCCCCCEEECCCCccCCcccccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCcccc
Confidence 4 55666677777777777666688999999999888887753221 12 26666666665
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.5e-27 Score=260.42 Aligned_cols=225 Identities=22% Similarity=0.270 Sum_probs=186.9
Q ss_pred CCCCCCEEEccCCCCCCCCCccccCCCCcCEEeccCCcCCCCCCccccCCCCCCEeeccCCCCCCCCchhhcCCCCccEE
Q 038019 87 TLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKELTVLAFGTNNFSGALPPELGNLAKLEQL 166 (866)
Q Consensus 87 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 166 (866)
....++.|+|++|.++ .+|..+.++++|++|+|++|.++ .+|..|+++++|++|+|++|.++ .+|..++++++|++|
T Consensus 79 ~~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L 155 (328)
T 4fcg_A 79 TQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLREL 155 (328)
T ss_dssp TSTTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEE
T ss_pred cccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEE
Confidence 3578999999999998 78888999999999999999999 89999999999999999999999 789999999999999
Q ss_pred EeecCCCCCCChhhhhc---------CcCCCEEEecCCCCCCCCcccccCCCCCCeEEccCCCCCCCCchhhcCCCCCCE
Q 038019 167 YIDSCGAGGEIPSTFAK---------LRNMQTLWASDNPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLES 237 (866)
Q Consensus 167 ~L~~n~l~~~~p~~~~~---------l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~ 237 (866)
+|++|++.+.+|..+.. +++|++|+|++|+++ .+|..++++++|++|+|++|.+++ +|.
T Consensus 156 ~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~---------- 223 (328)
T 4fcg_A 156 SIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGP---------- 223 (328)
T ss_dssp EEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCG----------
T ss_pred ECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-Cch----------
Confidence 99999998888887654 555666666665555 455555555555555555555553 222
Q ss_pred EEccCccCCCCCchhhhcCCCCCceeccCcccccCCCcccCCCCCcCEEeeecCcCcccCCcccCCCCCCcEEECcCCCC
Q 038019 238 LQMSDIYNVSSSLDFVMSLKNLTDLSLRNALITGTIPFGIGELQMLQILDLSFNNLTGQIPATLFNIDSLEYLFLGNNSL 317 (866)
Q Consensus 238 L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l 317 (866)
.+..+++|+.|+|++|.+.+.+|..++.+++|+.|+|++|.+.+.+|..+..+++|++|+|++|++
T Consensus 224 --------------~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~ 289 (328)
T 4fcg_A 224 --------------AIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVN 289 (328)
T ss_dssp --------------GGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTT
T ss_pred --------------hhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCc
Confidence 345566677777778888888999999999999999999999999999999999999999999999
Q ss_pred cccCCccc--CCCCCEEEeeCCCCC
Q 038019 318 SGTLPDQK--SENLQKIDLSHNHLS 340 (866)
Q Consensus 318 ~g~~p~~~--~~~L~~L~Ls~N~l~ 340 (866)
.+.+|... .++|+.+++..|.+.
T Consensus 290 ~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 290 LSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp CCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred hhhccHHHhhccCceEEeCCHHHHH
Confidence 99999865 488999999988765
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=4.7e-28 Score=267.62 Aligned_cols=258 Identities=18% Similarity=0.147 Sum_probs=223.9
Q ss_pred eeeEEEEEEcccCcCCCCCcccCCCCCCCEEEccCCCCCCCCCccccCCCCcCEEeccCCcCCCCCCccccCCCCCCEee
Q 038019 64 TCHITKLRVYGLNKKGVIPEELVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKELTVLA 143 (866)
Q Consensus 64 ~~~v~~L~l~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 143 (866)
..+++.|++++|++++..+..|.++++|++|+|++|.+++..|..|.++++|++|+|++|++++..+..|+++++|++|+
T Consensus 51 ~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 130 (353)
T 2z80_A 51 TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLN 130 (353)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEE
T ss_pred cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEE
Confidence 34899999999999987777899999999999999999988888999999999999999999966556699999999999
Q ss_pred ccCCCCCCCCc-hhhcCCCCccEEEeecCC-CCCCChhhhhcCcCCCEEEecCCCCCCCCcccccCCCCCCeEEccCCCC
Q 038019 144 FGTNNFSGALP-PELGNLAKLEQLYIDSCG-AGGEIPSTFAKLRNMQTLWASDNPFTGKIPDFIGNWTKLKSLRFQGNSF 221 (866)
Q Consensus 144 Ls~N~l~~~~p-~~l~~l~~L~~L~L~~n~-l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l 221 (866)
|++|+++...+ ..+..+++|++|++++|+ +....+..|.++++|++|++++|.+++..|..+.++++|++|++++|.+
T Consensus 131 L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l 210 (353)
T 2z80_A 131 LLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQH 210 (353)
T ss_dssp CTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCS
T ss_pred CCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCcc
Confidence 99999995544 478999999999999994 7777788999999999999999999988899999999999999999999
Q ss_pred CCCCchhhcCCCCCCEEEccCccCCCCCchh---hhcCCCCCceeccCccccc----CCCcccCCCCCcCEEeeecCcCc
Q 038019 222 QGPIPSSLSKLASLESLQMSDIYNVSSSLDF---VMSLKNLTDLSLRNALITG----TIPFGIGELQMLQILDLSFNNLT 294 (866)
Q Consensus 222 ~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~---~~~l~~L~~L~L~~n~l~~----~~p~~~~~l~~L~~L~Ls~N~l~ 294 (866)
.......+..+++|+.|++++|.+....... ......++.++|+++.+++ .+|..+..+++|+.|+|++|+++
T Consensus 211 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~ 290 (353)
T 2z80_A 211 ILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK 290 (353)
T ss_dssp TTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC
T ss_pred ccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC
Confidence 7544445567899999999999987654432 3346778889999988876 36778899999999999999999
Q ss_pred ccCCcc-cCCCCCCcEEECcCCCCcccCC
Q 038019 295 GQIPAT-LFNIDSLEYLFLGNNSLSGTLP 322 (866)
Q Consensus 295 ~~~p~~-l~~l~~L~~L~L~~N~l~g~~p 322 (866)
.+|.. +..+++|++|+|++|++++..|
T Consensus 291 -~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 291 -SVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp -CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred -ccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 45555 5899999999999999997654
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=2.2e-27 Score=253.92 Aligned_cols=254 Identities=20% Similarity=0.225 Sum_probs=185.3
Q ss_pred EEEEEcccCcCCCCCcccCCCCCCCEEEccCCCCCCCCCccccCCCCcCEEeccCCcCCCCCCccccCCCCCCEeeccCC
Q 038019 68 TKLRVYGLNKKGVIPEELVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKELTVLAFGTN 147 (866)
Q Consensus 68 ~~L~l~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N 147 (866)
+.++..+++++. +|..+ .++|++|+|++|.+++..+..|.++++|++|+|++|.+++..|..|.++++|++|+|++|
T Consensus 14 ~~~~c~~~~l~~-ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQA-VPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCSS-CCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCccc-CCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 567777777664 45433 468888899888888777777888888888888888888777888888888888888888
Q ss_pred C-CCCCCchhhcCCCCccEEEeecCCCCCCChhhhhcCcCCCEEEecCCCCCCCCcccccCCCCCCeEEccCCCCCCCCc
Q 038019 148 N-FSGALPPELGNLAKLEQLYIDSCGAGGEIPSTFAKLRNMQTLWASDNPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIP 226 (866)
Q Consensus 148 ~-l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p 226 (866)
. ++...|..+..+++|++|+|++|.+++..|..|.++++|++|++++|++++..+..+..+++|++|+|++|.+++..+
T Consensus 91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 170 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE 170 (285)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECT
T ss_pred CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCH
Confidence 6 766667778888888888888888877777777777777777777777776666667777777777777777665444
Q ss_pred hhhcCCCCCCEEEccCccCCCCCchhhhcCCCCCceeccCcccccCCCcccCCCCCcCEEeeecCcCcccCCcccCCCCC
Q 038019 227 SSLSKLASLESLQMSDIYNVSSSLDFVMSLKNLTDLSLRNALITGTIPFGIGELQMLQILDLSFNNLTGQIPATLFNIDS 306 (866)
Q Consensus 227 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~ 306 (866)
..|.. +++|+.|+|++|.+++..|..+..+++|+.|++++|.+++..+..+..+++
T Consensus 171 ~~~~~------------------------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 226 (285)
T 1ozn_A 171 RAFRG------------------------LHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRA 226 (285)
T ss_dssp TTTTT------------------------CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTT
T ss_pred HHhcC------------------------ccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcc
Confidence 44444 445555566666666666777778888888888888888766667888888
Q ss_pred CcEEECcCCCCcccCCcc-cCCCCCEEEeeCCCCCCccCcccc
Q 038019 307 LEYLFLGNNSLSGTLPDQ-KSENLQKIDLSHNHLSGTFPLWVN 348 (866)
Q Consensus 307 L~~L~L~~N~l~g~~p~~-~~~~L~~L~Ls~N~l~g~~p~~~~ 348 (866)
|++|+|++|.++...+.. ....++.+..+.|.+.+..|..+.
T Consensus 227 L~~L~l~~N~~~c~~~~~~~~~~l~~~~~~~~~~~c~~p~~l~ 269 (285)
T 1ozn_A 227 LQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSLPQRLA 269 (285)
T ss_dssp CCEEECCSSCEECSGGGHHHHHHHHHCCSEECCCBEEESGGGT
T ss_pred cCEEeccCCCccCCCCcHHHHHHHHhcccccCccccCCchHhC
Confidence 888888888887544332 123345555667777777776543
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
Probab=99.95 E-value=5.9e-27 Score=267.82 Aligned_cols=244 Identities=18% Similarity=0.143 Sum_probs=167.5
Q ss_pred EEEEcccCcCCCCCcccCCCCCCCEEEccCCCCCCCCCccccCCCCcCEEeccCCcCCCCCCccccCCCCCCEeeccCCC
Q 038019 69 KLRVYGLNKKGVIPEELVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKELTVLAFGTNN 148 (866)
Q Consensus 69 ~L~l~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 148 (866)
.++..+.+++ .+|..+. ++|++|+|++|.+++..|..|.++++|++|+|++|+|++..|..|.++++|++|+|++|+
T Consensus 58 ~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~ 134 (452)
T 3zyi_A 58 KVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW 134 (452)
T ss_dssp EEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCc
Confidence 4555555555 3565554 688999999999998888889999999999999999988888889999999999999999
Q ss_pred CCCCCchhhcCCCCccEEEeecCCCCCCChhhhhcCcCCCEEEecCCCCCCCC-cccccCCCCCCeEEccCCCCCCCCch
Q 038019 149 FSGALPPELGNLAKLEQLYIDSCGAGGEIPSTFAKLRNMQTLWASDNPFTGKI-PDFIGNWTKLKSLRFQGNSFQGPIPS 227 (866)
Q Consensus 149 l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~-p~~l~~l~~L~~L~L~~N~l~~~~p~ 227 (866)
++...+..|..+++|++|+|++|.++...+..|.++++|++|+|++|...+.+ +..|.++++|++|+|++|.+++. |
T Consensus 135 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~- 212 (452)
T 3zyi_A 135 LTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-P- 212 (452)
T ss_dssp CSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-C-
T ss_pred CCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-c-
Confidence 98777777888999999999999888777778888888999988884433343 44677888888888888888743 3
Q ss_pred hhcCCCCCCEEEccCccCCCCCchhhhcCCCCCceeccCcccccCCCcccCCCCCcCEEeeecCcCcccCCcccCCCCCC
Q 038019 228 SLSKLASLESLQMSDIYNVSSSLDFVMSLKNLTDLSLRNALITGTIPFGIGELQMLQILDLSFNNLTGQIPATLFNIDSL 307 (866)
Q Consensus 228 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L 307 (866)
.+..+++|+.|+|++|.+.......+..+++|+.|+|++|.+++..+..|..+++|+.|+|++|++++..+..+..+++|
T Consensus 213 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 292 (452)
T 3zyi_A 213 NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYL 292 (452)
T ss_dssp CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTC
T ss_pred cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCC
Confidence 35555555555555555544444444444455555555554444444444444445555555554444444444444444
Q ss_pred cEEECcCCCC
Q 038019 308 EYLFLGNNSL 317 (866)
Q Consensus 308 ~~L~L~~N~l 317 (866)
+.|+|++|.+
T Consensus 293 ~~L~L~~Np~ 302 (452)
T 3zyi_A 293 VELHLHHNPW 302 (452)
T ss_dssp CEEECCSSCE
T ss_pred CEEEccCCCc
Confidence 4444444444
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.95 E-value=2e-26 Score=262.85 Aligned_cols=273 Identities=19% Similarity=0.141 Sum_probs=222.0
Q ss_pred eeeEEEEEEcccCcCCCCCcccCCCCCCCEEEccCCCCCCCCCccccCCCCcCEEeccCCcCCCCCCccccCCCCCCEee
Q 038019 64 TCHITKLRVYGLNKKGVIPEELVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKELTVLA 143 (866)
Q Consensus 64 ~~~v~~L~l~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 143 (866)
..+++.|++++|++++. | ++.+++|++|+|++|.+++. + ++++++|++|+|++|++++ +| ++.+++|++|+
T Consensus 63 l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~ 133 (457)
T 3bz5_A 63 LTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLN 133 (457)
T ss_dssp CTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEEE
T ss_pred cCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEEE
Confidence 35789999999999985 4 89999999999999999874 4 8999999999999999997 44 89999999999
Q ss_pred ccCCCCCCCCchhhcCCCCccEEEeecCCCCCCChhhhhcCcCCCEEEecCCCCCCCCcccccCCCCCCeEEccCCCCCC
Q 038019 144 FGTNNFSGALPPELGNLAKLEQLYIDSCGAGGEIPSTFAKLRNMQTLWASDNPFTGKIPDFIGNWTKLKSLRFQGNSFQG 223 (866)
Q Consensus 144 Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~ 223 (866)
+++|++++. .++.+++|++|++++|...+.+ .+..+++|++|++++|++++ +| +..+++|+.|++++|.+++
T Consensus 134 l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~ 205 (457)
T 3bz5_A 134 CARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITK 205 (457)
T ss_dssp CTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSC
T ss_pred CCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCe
Confidence 999999974 3889999999999999766666 47889999999999999997 44 7889999999999999987
Q ss_pred CCchhhcCCCCCCEEEccCccCCCCCchhhhcCCCCCceeccCcccccCCCcccCCCC-------CcCEEeeecCcCccc
Q 038019 224 PIPSSLSKLASLESLQMSDIYNVSSSLDFVMSLKNLTDLSLRNALITGTIPFGIGELQ-------MLQILDLSFNNLTGQ 296 (866)
Q Consensus 224 ~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~-------~L~~L~Ls~N~l~~~ 296 (866)
. .+..+++|+.|++++|.+...+ +..+++|+.|++++|.+++..+..+..++ +|+.|++++|.+.+.
T Consensus 206 ~---~l~~l~~L~~L~Ls~N~l~~ip---~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~ 279 (457)
T 3bz5_A 206 L---DLNQNIQLTFLDCSSNKLTEID---VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIY 279 (457)
T ss_dssp C---CCTTCTTCSEEECCSSCCSCCC---CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCE
T ss_pred e---ccccCCCCCEEECcCCcccccC---ccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCc
Confidence 5 3888999999999999887743 77889999999999999986554454444 456666667766666
Q ss_pred CCcccCCCCCCcEEECcCCCCcccCCcc----------cCCCCCEEEeeCCCCCCccCccccccc-ccccccccccc
Q 038019 297 IPATLFNIDSLEYLFLGNNSLSGTLPDQ----------KSENLQKIDLSHNHLSGTFPLWVNSEL-QMNLAVNNFKF 362 (866)
Q Consensus 297 ~p~~l~~l~~L~~L~L~~N~l~g~~p~~----------~~~~L~~L~Ls~N~l~g~~p~~~~~~~-~l~l~~N~~~~ 362 (866)
+| +..+++|+.|+|++|.+.+.+|.. ..++|+.|++++|++++. +-.-...+ .|++++|.+++
T Consensus 280 ~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l-~l~~l~~L~~L~l~~N~l~~ 353 (457)
T 3bz5_A 280 FQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTEL-DVSHNTKLKSLSCVNAHIQD 353 (457)
T ss_dssp EE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSCC-CCTTCTTCSEEECCSSCCCB
T ss_pred cc--ccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCccccc-ccccCCcCcEEECCCCCCCC
Confidence 65 567889999999999877665532 236789999999999984 42212233 38999998875
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=9.2e-27 Score=265.27 Aligned_cols=244 Identities=19% Similarity=0.201 Sum_probs=171.7
Q ss_pred EEEEcccCcCCCCCcccCCCCCCCEEEccCCCCCCCCCccccCCCCcCEEeccCCcCCCCCCccccCCCCCCEeeccCCC
Q 038019 69 KLRVYGLNKKGVIPEELVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKELTVLAFGTNN 148 (866)
Q Consensus 69 ~L~l~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 148 (866)
.++..+.+++ .+|..+. ++|+.|+|++|++++..+..|.++++|++|+|++|.|++..+..|.++++|++|+|++|+
T Consensus 47 ~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~ 123 (440)
T 3zyj_A 47 KVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR 123 (440)
T ss_dssp EEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSC
T ss_pred EEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCc
Confidence 4555555555 4666554 688999999999998888889999999999999999988878889999999999999999
Q ss_pred CCCCCchhhcCCCCccEEEeecCCCCCCChhhhhcCcCCCEEEecCCCCCCCC-cccccCCCCCCeEEccCCCCCCCCch
Q 038019 149 FSGALPPELGNLAKLEQLYIDSCGAGGEIPSTFAKLRNMQTLWASDNPFTGKI-PDFIGNWTKLKSLRFQGNSFQGPIPS 227 (866)
Q Consensus 149 l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~-p~~l~~l~~L~~L~L~~N~l~~~~p~ 227 (866)
++...+..|..+++|++|+|++|.++...+..|.++++|++|+|++|...+.+ +..|.++++|++|+|++|.++. +|
T Consensus 124 l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~- 201 (440)
T 3zyj_A 124 LTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE-IP- 201 (440)
T ss_dssp CSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS-CC-
T ss_pred CCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc-cc-
Confidence 98777778888999999999999888877778888888888888885433333 4467788888888888888773 33
Q ss_pred hhcCCCCCCEEEccCccCCCCCchhhhcCCCCCceeccCcccccCCCcccCCCCCcCEEeeecCcCcccCCcccCCCCCC
Q 038019 228 SLSKLASLESLQMSDIYNVSSSLDFVMSLKNLTDLSLRNALITGTIPFGIGELQMLQILDLSFNNLTGQIPATLFNIDSL 307 (866)
Q Consensus 228 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L 307 (866)
.+..+++| +.|+|++|.+++..|..|..+++|+.|+|++|++++..+..|..+++|
T Consensus 202 ~~~~l~~L------------------------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 257 (440)
T 3zyj_A 202 NLTPLIKL------------------------DELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSL 257 (440)
T ss_dssp CCTTCSSC------------------------CEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTC
T ss_pred ccCCCccc------------------------CEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCC
Confidence 24444444 445555555555455555555555555555555555555555555556
Q ss_pred cEEECcCCCCcccCCccc--CCCCCEEEeeCCCCCC
Q 038019 308 EYLFLGNNSLSGTLPDQK--SENLQKIDLSHNHLSG 341 (866)
Q Consensus 308 ~~L~L~~N~l~g~~p~~~--~~~L~~L~Ls~N~l~g 341 (866)
++|+|++|++++..+... .++|+.|+|++|++.+
T Consensus 258 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C 293 (440)
T 3zyj_A 258 VEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNC 293 (440)
T ss_dssp CEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEEC
T ss_pred CEEECCCCCCCccChhHhccccCCCEEEcCCCCccC
Confidence 666666665554333221 2455666666665544
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.5e-28 Score=266.57 Aligned_cols=248 Identities=18% Similarity=0.179 Sum_probs=167.1
Q ss_pred CCCCCCCEEEccCCCCCCCCCccccCCCCcCEEeccCCcC-CCCCCcccc-------CCCCCCEeeccCCCCCCCCchhh
Q 038019 86 VTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDF-SGPVPRELG-------NLKELTVLAFGTNNFSGALPPEL 157 (866)
Q Consensus 86 ~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~~~p~~l~-------~l~~L~~L~Ls~N~l~~~~p~~l 157 (866)
+.+++|+.|++++|.+ .+|..+... |++|+|++|.+ ...+|..+. ++++|++|+|++|.+++.+|..+
T Consensus 40 ~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 115 (312)
T 1wwl_A 40 GGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPL 115 (312)
T ss_dssp EEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCS
T ss_pred ccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHH
Confidence 3445566667777766 456555433 66777777766 334555554 56777777777777776666665
Q ss_pred --cCCCCccEEEeecCCCCCCChhhhhcC-----cCCCEEEecCCCCCCCCcccccCCCCCCeEEccCCCCCCC--Cchh
Q 038019 158 --GNLAKLEQLYIDSCGAGGEIPSTFAKL-----RNMQTLWASDNPFTGKIPDFIGNWTKLKSLRFQGNSFQGP--IPSS 228 (866)
Q Consensus 158 --~~l~~L~~L~L~~n~l~~~~p~~~~~l-----~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~--~p~~ 228 (866)
+.+++|++|+|++|++++. |..+..+ ++|++|+|++|++++..|..|+++++|++|+|++|++.+. .+..
T Consensus 116 ~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 194 (312)
T 1wwl_A 116 LEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISA 194 (312)
T ss_dssp SSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHH
T ss_pred HHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHH
Confidence 6677777777777777666 6666665 6777777777777766667777777777777777776654 2333
Q ss_pred h--cCCCCCCEEEccCccCCCC---CchhhhcCCCCCceeccCcccccCCC-cccCCCCCcCEEeeecCcCcccCCcccC
Q 038019 229 L--SKLASLESLQMSDIYNVSS---SLDFVMSLKNLTDLSLRNALITGTIP-FGIGELQMLQILDLSFNNLTGQIPATLF 302 (866)
Q Consensus 229 ~--~~l~~L~~L~l~~n~~~~~---~~~~~~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~l~ 302 (866)
+ .++++|+.|++++|.+... ....+..+++|+.|+|++|.+++..| ..+..+++|+.|+|++|.++ .+|..+.
T Consensus 195 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~ 273 (312)
T 1wwl_A 195 LCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP 273 (312)
T ss_dssp SCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC
T ss_pred HHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc
Confidence 3 6677777777777766522 12234567788888888888877664 34566788888888888887 6666665
Q ss_pred CCCCCcEEECcCCCCcccCCcccCCCCCEEEeeCCCCCC
Q 038019 303 NIDSLEYLFLGNNSLSGTLPDQKSENLQKIDLSHNHLSG 341 (866)
Q Consensus 303 ~l~~L~~L~L~~N~l~g~~p~~~~~~L~~L~Ls~N~l~g 341 (866)
++|++|+|++|++++.......++|+.|+|++|++++
T Consensus 274 --~~L~~L~Ls~N~l~~~p~~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 274 --AKLSVLDLSYNRLDRNPSPDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp --SEEEEEECCSSCCCSCCCTTTSCEEEEEECTTCTTTC
T ss_pred --CCceEEECCCCCCCCChhHhhCCCCCEEeccCCCCCC
Confidence 7788888888888866222234678888888888875
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.94 E-value=1e-26 Score=251.42 Aligned_cols=248 Identities=21% Similarity=0.192 Sum_probs=216.2
Q ss_pred CEEEccCCCCCCCCCccccCCCCcCEEeccCCcCCCCCCccccCCCCCCEeeccCCCCCCC--CchhhcCCCCccEEEee
Q 038019 92 TVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKELTVLAFGTNNFSGA--LPPELGNLAKLEQLYID 169 (866)
Q Consensus 92 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~--~p~~l~~l~~L~~L~L~ 169 (866)
+.++++++.++ .+|..+. ++|++|+|++|+++...+..|.++++|++|+|++|.++.. .+..+..+++|++|+|+
T Consensus 10 ~~l~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls 86 (306)
T 2z66_A 10 TEIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86 (306)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC
T ss_pred CEEEcCCCCcc-cCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECC
Confidence 57899999987 5666443 6899999999999965556689999999999999999843 36788889999999999
Q ss_pred cCCCCCCChhhhhcCcCCCEEEecCCCCCCCCc-ccccCCCCCCeEEccCCCCCCCCchhhcCCCCCCEEEccCccCCC-
Q 038019 170 SCGAGGEIPSTFAKLRNMQTLWASDNPFTGKIP-DFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLESLQMSDIYNVS- 247 (866)
Q Consensus 170 ~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p-~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~n~~~~- 247 (866)
+|.++. +|..+..+++|++|++++|++++..+ ..+..+++|++|++++|.+.+..+..|.++++|+.|++++|.+..
T Consensus 87 ~n~i~~-l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 165 (306)
T 2z66_A 87 FNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN 165 (306)
T ss_dssp SCSEEE-EEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGG
T ss_pred CCcccc-ChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccc
Confidence 999874 66678999999999999999986655 678899999999999999998888999999999999999998765
Q ss_pred CCchhhhcCCCCCceeccCcccccCCCcccCCCCCcCEEeeecCcCcccCCcccCCCCCCcEEECcCCCCcccCCcccC-
Q 038019 248 SSLDFVMSLKNLTDLSLRNALITGTIPFGIGELQMLQILDLSFNNLTGQIPATLFNIDSLEYLFLGNNSLSGTLPDQKS- 326 (866)
Q Consensus 248 ~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~~p~~~~- 326 (866)
..+..+..+++|+.|+|++|.+++..|..+..+++|+.|+|++|.+++..+..+..+++|++|+|++|++++..|....
T Consensus 166 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 245 (306)
T 2z66_A 166 FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQH 245 (306)
T ss_dssp EECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCC
T ss_pred cchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHh
Confidence 4456788899999999999999988888999999999999999999988887899999999999999999988776442
Q ss_pred --CCCCEEEeeCCCCCCcc
Q 038019 327 --ENLQKIDLSHNHLSGTF 343 (866)
Q Consensus 327 --~~L~~L~Ls~N~l~g~~ 343 (866)
++|+.|+|++|++++..
T Consensus 246 ~~~~L~~L~L~~N~~~~~c 264 (306)
T 2z66_A 246 FPSSLAFLNLTQNDFACTC 264 (306)
T ss_dssp CCTTCCEEECTTCCEECSG
T ss_pred hhccCCEEEccCCCeeccc
Confidence 48999999999998764
|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=4e-26 Score=272.35 Aligned_cols=302 Identities=21% Similarity=0.160 Sum_probs=243.4
Q ss_pred eeeEEEEEEcccCcCCCCCcccCCCCCCCEEEccCCCCCCCCCccccCCCCcCEEeccCCcCCCCCCccccCCCCCCEee
Q 038019 64 TCHITKLRVYGLNKKGVIPEELVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKELTVLA 143 (866)
Q Consensus 64 ~~~v~~L~l~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 143 (866)
..+++.|+|++|++++..|..|.+|++|++|+|++|+|++..+..|.++++|++|+|++|++++..+..|+++++|++|+
T Consensus 75 l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~ 154 (635)
T 4g8a_A 75 FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELN 154 (635)
T ss_dssp CTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEE
T ss_pred CCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeec
Confidence 45899999999999998888999999999999999999987778899999999999999999988888899999999999
Q ss_pred ccCCCCCC-CCchhhcCCCCccEEEeecCCCCCCChhhhhcCcC------------------------------------
Q 038019 144 FGTNNFSG-ALPPELGNLAKLEQLYIDSCGAGGEIPSTFAKLRN------------------------------------ 186 (866)
Q Consensus 144 Ls~N~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~------------------------------------ 186 (866)
|++|.++. .+|..++.+++|++|+|++|++++..+..|..+.+
T Consensus 155 Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n 234 (635)
T 4g8a_A 155 VAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNN 234 (635)
T ss_dssp CCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESC
T ss_pred cccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcc
Confidence 99999976 46888999999999999999988766655443322
Q ss_pred --------------------------------------------------------------------------------
Q 038019 187 -------------------------------------------------------------------------------- 186 (866)
Q Consensus 187 -------------------------------------------------------------------------------- 186 (866)
T Consensus 235 ~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 314 (635)
T 4g8a_A 235 FDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLV 314 (635)
T ss_dssp CSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEE
T ss_pred cccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhccccccccc
Confidence
Q ss_pred ---------------CCEEEecCCCCCCCCc-------------------ccccCCCCCCeEEccCCCCCC---------
Q 038019 187 ---------------MQTLWASDNPFTGKIP-------------------DFIGNWTKLKSLRFQGNSFQG--------- 223 (866)
Q Consensus 187 ---------------L~~L~L~~N~l~~~~p-------------------~~l~~l~~L~~L~L~~N~l~~--------- 223 (866)
|+.|++.+|.+....+ .....+++|+.|+++.|.+..
T Consensus 315 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~ 394 (635)
T 4g8a_A 315 SVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDF 394 (635)
T ss_dssp SCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHH
T ss_pred ccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccccccccccchhhccccccccccccchh
Confidence 1222222222111100 011134556666666665421
Q ss_pred ----------------------------------------C-CchhhcCCCCCCEEEccCccCCCCCchhhhcCCCCCce
Q 038019 224 ----------------------------------------P-IPSSLSKLASLESLQMSDIYNVSSSLDFVMSLKNLTDL 262 (866)
Q Consensus 224 ----------------------------------------~-~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L 262 (866)
. .+..|..+.+|+.++++.|.+.......+..++.|+.|
T Consensus 395 ~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L 474 (635)
T 4g8a_A 395 GTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVL 474 (635)
T ss_dssp SCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEE
T ss_pred hhhhhhhhhccccccccccccccccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhh
Confidence 0 11345667888899999998887777788899999999
Q ss_pred eccCcccc-cCCCcccCCCCCcCEEeeecCcCcccCCcccCCCCCCcEEECcCCCCcccCCccc--CCCCCEEEeeCCCC
Q 038019 263 SLRNALIT-GTIPFGIGELQMLQILDLSFNNLTGQIPATLFNIDSLEYLFLGNNSLSGTLPDQK--SENLQKIDLSHNHL 339 (866)
Q Consensus 263 ~L~~n~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~~p~~~--~~~L~~L~Ls~N~l 339 (866)
+|++|.+. +..|..|..+++|+.|+|++|++++..|..|..+++|++|+|++|++++..|..+ .++|+.|+|++|+|
T Consensus 475 ~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l 554 (635)
T 4g8a_A 475 KMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI 554 (635)
T ss_dssp ECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCC
T ss_pred hhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcC
Confidence 99999754 4578889999999999999999999999999999999999999999998777644 47999999999999
Q ss_pred CCccCccccc---ccc-ccccccccccccC
Q 038019 340 SGTFPLWVNS---ELQ-MNLAVNNFKFDIS 365 (866)
Q Consensus 340 ~g~~p~~~~~---~~~-l~l~~N~~~~~~~ 365 (866)
++..|..+.. .++ |+|++|+|.|++.
T Consensus 555 ~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~ 584 (635)
T 4g8a_A 555 MTSKKQELQHFPSSLAFLNLTQNDFACTCE 584 (635)
T ss_dssp CBCCSSCTTCCCTTCCEEECTTCCBCCSGG
T ss_pred CCCCHHHHHhhhCcCCEEEeeCCCCcccCC
Confidence 9999987753 334 9999999999854
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=3.8e-27 Score=252.16 Aligned_cols=238 Identities=18% Similarity=0.167 Sum_probs=203.2
Q ss_pred eeeEEEEEEcccCcCCCCCcccCCCCCCCEEEccCCCCCCCCCccccCCCCcCEEeccCCc-CCCCCCccccCCCCCCEe
Q 038019 64 TCHITKLRVYGLNKKGVIPEELVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHND-FSGPVPRELGNLKELTVL 142 (866)
Q Consensus 64 ~~~v~~L~l~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~~~p~~l~~l~~L~~L 142 (866)
..+++.|++++|++++..+..|.++++|++|+|++|.+++..|..|.++++|++|+|++|. ++...|..|..+++|++|
T Consensus 31 ~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L 110 (285)
T 1ozn_A 31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL 110 (285)
T ss_dssp CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEE
Confidence 4589999999999999888899999999999999999998889999999999999999997 887778999999999999
Q ss_pred eccCCCCCCCCchhhcCCCCccEEEeecCCCCCCChhhhhcCcCCCEEEecCCCCCCCCcccccCCCCCCeEEccCCCCC
Q 038019 143 AFGTNNFSGALPPELGNLAKLEQLYIDSCGAGGEIPSTFAKLRNMQTLWASDNPFTGKIPDFIGNWTKLKSLRFQGNSFQ 222 (866)
Q Consensus 143 ~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~ 222 (866)
+|++|.+++..|..+.++++|++|+|++|.+++..+..|..+++|++|+|++|++++..+..+..+++|+.|+|++|.++
T Consensus 111 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 190 (285)
T 1ozn_A 111 HLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA 190 (285)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred ECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCccc
Confidence 99999999988999999999999999999999888888999999999999999999777777999999999999999999
Q ss_pred CCCchhhcCCCCCCEEEccCccCCCCCchhhhcCCCCCceeccCcccccCCCcccCCCCCcCEEeeecCcCcccCCcccC
Q 038019 223 GPIPSSLSKLASLESLQMSDIYNVSSSLDFVMSLKNLTDLSLRNALITGTIPFGIGELQMLQILDLSFNNLTGQIPATLF 302 (866)
Q Consensus 223 ~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~ 302 (866)
+..|..|.++++|+.|++++|.+.......+..+++|+.|+|++|.+....+.. .-+..|+.+....+.+....|..+.
T Consensus 191 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~~~~l~~~~~~~~~~~c~~p~~l~ 269 (285)
T 1ozn_A 191 HVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQRLA 269 (285)
T ss_dssp EECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HHHHHHHHCCSEECCCBEEESGGGT
T ss_pred ccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH-HHHHHHHhcccccCccccCCchHhC
Confidence 888999999999999999888887766667777888888888888776543321 0112233444555666555555543
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
Probab=99.94 E-value=4.6e-26 Score=260.45 Aligned_cols=249 Identities=18% Similarity=0.156 Sum_probs=221.6
Q ss_pred CCCEEEccCCCCCCCCCccccCCCCcCEEeccCCcCCCCCCccccCCCCCCEeeccCCCCCCCCchhhcCCCCccEEEee
Q 038019 90 YLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKELTVLAFGTNNFSGALPPELGNLAKLEQLYID 169 (866)
Q Consensus 90 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~ 169 (866)
..+.++.+++.++ .+|..+. ++|++|+|++|+|++..|..|.++++|++|+|++|.+++..+..|.++++|++|+|+
T Consensus 55 ~~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~ 131 (452)
T 3zyi_A 55 QFSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF 131 (452)
T ss_dssp SSCEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCcEEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence 3567899998887 5776554 689999999999999889999999999999999999999888999999999999999
Q ss_pred cCCCCCCChhhhhcCcCCCEEEecCCCCCCCCcccccCCCCCCeEEccCC-CCCCCCchhhcCCCCCCEEEccCccCCCC
Q 038019 170 SCGAGGEIPSTFAKLRNMQTLWASDNPFTGKIPDFIGNWTKLKSLRFQGN-SFQGPIPSSLSKLASLESLQMSDIYNVSS 248 (866)
Q Consensus 170 ~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N-~l~~~~p~~~~~l~~L~~L~l~~n~~~~~ 248 (866)
+|+++...+..|..+++|++|+|++|+++...+..|.++++|+.|+|++| .+....+..|.++++|+.|++++|.+...
T Consensus 132 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~ 211 (452)
T 3zyi_A 132 DNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM 211 (452)
T ss_dssp SSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC
T ss_pred CCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc
Confidence 99999888888999999999999999999777778999999999999995 45444455789999999999999988754
Q ss_pred CchhhhcCCCCCceeccCcccccCCCcccCCCCCcCEEeeecCcCcccCCcccCCCCCCcEEECcCCCCcccCCccc--C
Q 038019 249 SLDFVMSLKNLTDLSLRNALITGTIPFGIGELQMLQILDLSFNNLTGQIPATLFNIDSLEYLFLGNNSLSGTLPDQK--S 326 (866)
Q Consensus 249 ~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~~p~~~--~ 326 (866)
+.+..+++|+.|+|++|.+++..|..|..+++|+.|+|++|++++..+..|..+++|+.|+|++|++++..+... .
T Consensus 212 --~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 289 (452)
T 3zyi_A 212 --PNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPL 289 (452)
T ss_dssp --CCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTC
T ss_pred --ccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccc
Confidence 457889999999999999999999999999999999999999999999999999999999999999996555432 4
Q ss_pred CCCCEEEeeCCCCCCcc
Q 038019 327 ENLQKIDLSHNHLSGTF 343 (866)
Q Consensus 327 ~~L~~L~Ls~N~l~g~~ 343 (866)
++|+.|+|++|++.+.-
T Consensus 290 ~~L~~L~L~~Np~~CdC 306 (452)
T 3zyi_A 290 RYLVELHLHHNPWNCDC 306 (452)
T ss_dssp TTCCEEECCSSCEECST
T ss_pred cCCCEEEccCCCcCCCC
Confidence 78999999999987653
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.94 E-value=4.5e-28 Score=262.84 Aligned_cols=245 Identities=19% Similarity=0.221 Sum_probs=211.1
Q ss_pred eeEEEEEEcccCcCCCCCcccCCCCCCCEEEccCCCCC-CCCCcccc-------CCCCcCEEeccCCcCCCCCCccc--c
Q 038019 65 CHITKLRVYGLNKKGVIPEELVTLQYLTVLKIDQNFFT-GPLPSFIG-------NLSRLMFLSFSHNDFSGPVPREL--G 134 (866)
Q Consensus 65 ~~v~~L~l~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~-~~~p~~l~-------~l~~L~~L~Ls~N~l~~~~p~~l--~ 134 (866)
.+++.|++.+|.+ .+|..+... |+.|+|++|.++ ..+|..+. ++++|++|+|++|++++.+|..+ .
T Consensus 43 ~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~ 118 (312)
T 1wwl_A 43 RSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEA 118 (312)
T ss_dssp EECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSC
T ss_pred CCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHh
Confidence 3567778888888 788777655 999999999994 56777666 79999999999999999999887 8
Q ss_pred CCCCCCEeeccCCCCCCCCchhhcCC-----CCccEEEeecCCCCCCChhhhhcCcCCCEEEecCCCCCCC--Ccccc--
Q 038019 135 NLKELTVLAFGTNNFSGALPPELGNL-----AKLEQLYIDSCGAGGEIPSTFAKLRNMQTLWASDNPFTGK--IPDFI-- 205 (866)
Q Consensus 135 ~l~~L~~L~Ls~N~l~~~~p~~l~~l-----~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~--~p~~l-- 205 (866)
.+++|++|+|++|++++. |..++.+ ++|++|+|++|++++..|..|..+++|++|+|++|++.+. ++..+
T Consensus 119 ~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~ 197 (312)
T 1wwl_A 119 TGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCP 197 (312)
T ss_dssp CSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCT
T ss_pred cCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHh
Confidence 999999999999999987 8888877 9999999999999999999999999999999999998765 34444
Q ss_pred cCCCCCCeEEccCCCCCCC--Cc-hhhcCCCCCCEEEccCccCCCCC-chhhhcCCCCCceeccCcccccCCCcccCCCC
Q 038019 206 GNWTKLKSLRFQGNSFQGP--IP-SSLSKLASLESLQMSDIYNVSSS-LDFVMSLKNLTDLSLRNALITGTIPFGIGELQ 281 (866)
Q Consensus 206 ~~l~~L~~L~L~~N~l~~~--~p-~~~~~l~~L~~L~l~~n~~~~~~-~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~ 281 (866)
..+++|++|+|++|.+++. ++ ..+.++++|+.|++++|.+.... ...+..+++|+.|+|++|.++ .+|..+. +
T Consensus 198 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~ 274 (312)
T 1wwl_A 198 LKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--A 274 (312)
T ss_dssp TSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--S
T ss_pred ccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--C
Confidence 8899999999999999842 22 44568899999999999988655 356677899999999999998 6777666 8
Q ss_pred CcCEEeeecCcCcccCCcccCCCCCCcEEECcCCCCcc
Q 038019 282 MLQILDLSFNNLTGQIPATLFNIDSLEYLFLGNNSLSG 319 (866)
Q Consensus 282 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g 319 (866)
+|+.|+|++|+|++. |. +..+++|++|+|++|++++
T Consensus 275 ~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 275 KLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp EEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred CceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 999999999999976 65 8899999999999999985
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=6.7e-26 Score=258.15 Aligned_cols=246 Identities=20% Similarity=0.237 Sum_probs=191.4
Q ss_pred CCEEEccCCCCCCCCCccccCCCCcCEEeccCCcCCCCCCccccCCCCCCEeeccCCCCCCCCchhhcCCCCccEEEeec
Q 038019 91 LTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKELTVLAFGTNNFSGALPPELGNLAKLEQLYIDS 170 (866)
Q Consensus 91 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~ 170 (866)
.+.++.+++.++ .+|..+. ++|++|+|++|+|++..+..|.++++|++|+|++|.+++..+..|.++++|++|+|++
T Consensus 45 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~ 121 (440)
T 3zyj_A 45 FSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD 121 (440)
T ss_dssp SCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS
T ss_pred CCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC
Confidence 457888888887 5676554 6788999999999887788888899999999999888877778888888888888888
Q ss_pred CCCCCCChhhhhcCcCCCEEEecCCCCCCCCcccccCCCCCCeEEccCCCCCCCC-chhhcCCCCCCEEEccCccCCCCC
Q 038019 171 CGAGGEIPSTFAKLRNMQTLWASDNPFTGKIPDFIGNWTKLKSLRFQGNSFQGPI-PSSLSKLASLESLQMSDIYNVSSS 249 (866)
Q Consensus 171 n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~-p~~~~~l~~L~~L~l~~n~~~~~~ 249 (866)
|+++...+..|..+++|++|+|++|.++...+..|.++++|++|+|++|+..+.+ +..|.++
T Consensus 122 n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l----------------- 184 (440)
T 3zyj_A 122 NRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGL----------------- 184 (440)
T ss_dssp SCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTC-----------------
T ss_pred CcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcc-----------------
Confidence 8888777777888888888888888877666667777777777777774333222 2344444
Q ss_pred chhhhcCCCCCceeccCcccccCCCcccCCCCCcCEEeeecCcCcccCCcccCCCCCCcEEECcCCCCcccCCccc--CC
Q 038019 250 LDFVMSLKNLTDLSLRNALITGTIPFGIGELQMLQILDLSFNNLTGQIPATLFNIDSLEYLFLGNNSLSGTLPDQK--SE 327 (866)
Q Consensus 250 ~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~~p~~~--~~ 327 (866)
++|+.|+|++|.++. +| .+..+++|+.|+|++|++++..|..|..+++|+.|+|++|++++..+..+ .+
T Consensus 185 -------~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 255 (440)
T 3zyj_A 185 -------SNLRYLNLAMCNLRE-IP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQ 255 (440)
T ss_dssp -------SSCCEEECTTSCCSS-CC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCT
T ss_pred -------cccCeecCCCCcCcc-cc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCC
Confidence 455555555555552 33 47788999999999999999999999999999999999999998776544 47
Q ss_pred CCCEEEeeCCCCCCccCccccc--cc-cccccccccccccC
Q 038019 328 NLQKIDLSHNHLSGTFPLWVNS--EL-QMNLAVNNFKFDIS 365 (866)
Q Consensus 328 ~L~~L~Ls~N~l~g~~p~~~~~--~~-~l~l~~N~~~~~~~ 365 (866)
+|+.|+|++|++++..+..+.. .+ .|+|++|.+.++..
T Consensus 256 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~ 296 (440)
T 3zyj_A 256 SLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCD 296 (440)
T ss_dssp TCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSST
T ss_pred CCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCCCC
Confidence 9999999999999776665542 23 49999999998754
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
Probab=99.93 E-value=5.7e-26 Score=258.84 Aligned_cols=269 Identities=20% Similarity=0.202 Sum_probs=194.6
Q ss_pred eeeEEEEEEcccCcCCCCCcccCCCCCCCEEEccCCCCCCCCCccccCCCCc-------------CEEeccCCcCCCCCC
Q 038019 64 TCHITKLRVYGLNKKGVIPEELVTLQYLTVLKIDQNFFTGPLPSFIGNLSRL-------------MFLSFSHNDFSGPVP 130 (866)
Q Consensus 64 ~~~v~~L~l~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L-------------~~L~Ls~N~l~~~~p 130 (866)
..++++|++++|++ |.+|++|+++++|++|+|++|.+.|.+|..++++.+| ++|++++|.+++ +|
T Consensus 10 ~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~-lp 87 (454)
T 1jl5_A 10 NTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-LP 87 (454)
T ss_dssp -------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-CC
T ss_pred cccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc-CC
Confidence 35789999999999 8999999999999999999999999999999998875 999999999985 44
Q ss_pred ccccCCCCCCEeeccCCCCCCCCchhhcCCCCccEEEeecCCCCCCChhhhhcCcCCCEEEecCCCCCCCCcccccCCCC
Q 038019 131 RELGNLKELTVLAFGTNNFSGALPPELGNLAKLEQLYIDSCGAGGEIPSTFAKLRNMQTLWASDNPFTGKIPDFIGNWTK 210 (866)
Q Consensus 131 ~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 210 (866)
.. .++|++|++++|.+++ +|.. +++|++|++++|++++. |.. .++|++|++++|++++ +| .++++++
T Consensus 88 ~~---~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~l-~~~---~~~L~~L~L~~n~l~~-lp-~~~~l~~ 154 (454)
T 1jl5_A 88 EL---PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKAL-SDL---PPLLEYLGVSNNQLEK-LP-ELQNSSF 154 (454)
T ss_dssp SC---CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSCC-CSC---CTTCCEEECCSSCCSS-CC-CCTTCTT
T ss_pred CC---cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCcc-cCC---CCCCCEEECcCCCCCC-Cc-ccCCCCC
Confidence 42 3789999999999987 5643 47899999999988763 211 2689999999999986 66 5888999
Q ss_pred CCeEEccCCCCCCCCchhhcCCCCCCEEEccCccCCCCCchhhhcCCCCCceeccCcccccCCCcccCCCCCcCEEeeec
Q 038019 211 LKSLRFQGNSFQGPIPSSLSKLASLESLQMSDIYNVSSSLDFVMSLKNLTDLSLRNALITGTIPFGIGELQMLQILDLSF 290 (866)
Q Consensus 211 L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~ 290 (866)
|++|++++|++++ +|.. ..+|+.|++++|.+.... .+..+++|+.|++++|.+++ +|.. .++|+.|++++
T Consensus 155 L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~l~--~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~ 224 (454)
T 1jl5_A 155 LKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEELP--ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVAGN 224 (454)
T ss_dssp CCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSSCC--CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEECCS
T ss_pred CCEEECCCCcCcc-cCCC---cccccEEECcCCcCCcCc--cccCCCCCCEEECCCCcCCc-CCCC---cCcccEEECcC
Confidence 9999999999885 5543 358899999998877643 57888999999999998886 4432 25889999999
Q ss_pred CcCcccCCcccCCCCCCcEEECcCCCCcccCCcccCCCCCEEEeeCCCCCCccCcccccccccccccccccc
Q 038019 291 NNLTGQIPATLFNIDSLEYLFLGNNSLSGTLPDQKSENLQKIDLSHNHLSGTFPLWVNSELQMNLAVNNFKF 362 (866)
Q Consensus 291 N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~~p~~~~~~L~~L~Ls~N~l~g~~p~~~~~~~~l~l~~N~~~~ 362 (866)
|.++ .+| .+..+++|++|++++|++++ +|. ..++|+.|++++|++++ +|........|++++|.+++
T Consensus 225 n~l~-~lp-~~~~l~~L~~L~l~~N~l~~-l~~-~~~~L~~L~l~~N~l~~-l~~~~~~L~~L~ls~N~l~~ 291 (454)
T 1jl5_A 225 NILE-ELP-ELQNLPFLTTIYADNNLLKT-LPD-LPPSLEALNVRDNYLTD-LPELPQSLTFLDVSENIFSG 291 (454)
T ss_dssp SCCS-SCC-CCTTCTTCCEEECCSSCCSS-CCS-CCTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCSE
T ss_pred CcCC-ccc-ccCCCCCCCEEECCCCcCCc-ccc-cccccCEEECCCCcccc-cCcccCcCCEEECcCCccCc
Confidence 9888 566 48888999999999999886 443 34789999999999887 66655444458888888875
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
Probab=99.93 E-value=8.4e-25 Score=249.20 Aligned_cols=262 Identities=24% Similarity=0.322 Sum_probs=130.0
Q ss_pred eEEEEEEcccCcCCCCCcccCCCCCCCEEEccCCCCCCCCCccccCCCCcCEEeccCCcCCCCCCccccCCCCCCEeecc
Q 038019 66 HITKLRVYGLNKKGVIPEELVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKELTVLAFG 145 (866)
Q Consensus 66 ~v~~L~l~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls 145 (866)
+++.|++++|.+++ +|.. +++|++|++++|.+++ +|.. .++|++|+|++|++++ +| .|+++++|++|+++
T Consensus 92 ~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~ 161 (454)
T 1jl5_A 92 HLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVD 161 (454)
T ss_dssp TCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECC
T ss_pred CCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECC
Confidence 56666666666665 4432 2455555555555543 2211 1455555555555553 44 35555555555555
Q ss_pred CCCCCCCCchhhcCCCCccEEEeecCCCCCCChhhhhcCcCCCEEEecCCCCCCCCcccccCCCCCCeEEccCCCCCCCC
Q 038019 146 TNNFSGALPPELGNLAKLEQLYIDSCGAGGEIPSTFAKLRNMQTLWASDNPFTGKIPDFIGNWTKLKSLRFQGNSFQGPI 225 (866)
Q Consensus 146 ~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~ 225 (866)
+|++++ +|..+ .+|++|++++|++++ +| .+.++++|++|++++|++++ +|... ++|++|++++|.++ .+
T Consensus 162 ~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~~---~~L~~L~l~~n~l~-~l 230 (454)
T 1jl5_A 162 NNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDLP---LSLESIVAGNNILE-EL 230 (454)
T ss_dssp SSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCCC---TTCCEEECCSSCCS-SC
T ss_pred CCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCCc---CcccEEECcCCcCC-cc
Confidence 555553 33222 355555555555554 33 35555555555555555553 22221 34555555555554 33
Q ss_pred chhhcCCCCCCEEEccCccCCCCCchhhhcCCCCCceeccCcccccCCCccc-----------------CCCCCcCEEee
Q 038019 226 PSSLSKLASLESLQMSDIYNVSSSLDFVMSLKNLTDLSLRNALITGTIPFGI-----------------GELQMLQILDL 288 (866)
Q Consensus 226 p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~-----------------~~l~~L~~L~L 288 (866)
| .+..+++|+.|++++|.+..... .+++|+.|++++|.+++ +|..+ .-.++|+.|++
T Consensus 231 p-~~~~l~~L~~L~l~~N~l~~l~~----~~~~L~~L~l~~N~l~~-l~~~~~~L~~L~ls~N~l~~l~~~~~~L~~L~l 304 (454)
T 1jl5_A 231 P-ELQNLPFLTTIYADNNLLKTLPD----LPPSLEALNVRDNYLTD-LPELPQSLTFLDVSENIFSGLSELPPNLYYLNA 304 (454)
T ss_dssp C-CCTTCTTCCEEECCSSCCSSCCS----CCTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCSEESCCCTTCCEEEC
T ss_pred c-ccCCCCCCCEEECCCCcCCcccc----cccccCEEECCCCcccc-cCcccCcCCEEECcCCccCcccCcCCcCCEEEC
Confidence 3 24555555555555554432111 12344444444444433 22111 00123444444
Q ss_pred ecCcCcccCCcccCCC-CCCcEEECcCCCCcccCCcccCCCCCEEEeeCCCCCCccCcccccccccccccccccc
Q 038019 289 SFNNLTGQIPATLFNI-DSLEYLFLGNNSLSGTLPDQKSENLQKIDLSHNHLSGTFPLWVNSELQMNLAVNNFKF 362 (866)
Q Consensus 289 s~N~l~~~~p~~l~~l-~~L~~L~L~~N~l~g~~p~~~~~~L~~L~Ls~N~l~g~~p~~~~~~~~l~l~~N~~~~ 362 (866)
++|++++ +..+ ++|++|++++|++++ +|.. .++|+.|++++|++++ +|..+.....|++++|.+.+
T Consensus 305 ~~N~l~~-----i~~~~~~L~~L~Ls~N~l~~-lp~~-~~~L~~L~L~~N~l~~-lp~~l~~L~~L~L~~N~l~~ 371 (454)
T 1jl5_A 305 SSNEIRS-----LCDLPPSLEELNVSNNKLIE-LPAL-PPRLERLIASFNHLAE-VPELPQNLKQLHVEYNPLRE 371 (454)
T ss_dssp CSSCCSE-----ECCCCTTCCEEECCSSCCSC-CCCC-CTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCSS
T ss_pred cCCcCCc-----ccCCcCcCCEEECCCCcccc-cccc-CCcCCEEECCCCcccc-ccchhhhccEEECCCCCCCc
Confidence 4444432 1122 467777777777775 4432 4677777777777773 55532222337777777765
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=3.3e-27 Score=256.69 Aligned_cols=245 Identities=18% Similarity=0.160 Sum_probs=157.8
Q ss_pred eEEEEEEcccCcCCCCCcccCCCCCCCEEEccCCCCCCCCCccccCCCCcCEEeccCCcCCCCCCccccCCCCCCEeecc
Q 038019 66 HITKLRVYGLNKKGVIPEELVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKELTVLAFG 145 (866)
Q Consensus 66 ~v~~L~l~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls 145 (866)
+++.++++.+++...+...+..+++|++|+|++|.+++..|..|.++++|++|+|++|.+++..+ |..+++|++|+|+
T Consensus 11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls 88 (317)
T 3o53_A 11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLN 88 (317)
T ss_dssp EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECC
T ss_pred ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECc
Confidence 34555666666655555556677788888888888887777888888888888888888876544 8888888888888
Q ss_pred CCCCCCCCchhhcCCCCccEEEeecCCCCCCChhhhhcCcCCCEEEecCCCCCCCCcccccCCCCCCeEEccCCCCCCCC
Q 038019 146 TNNFSGALPPELGNLAKLEQLYIDSCGAGGEIPSTFAKLRNMQTLWASDNPFTGKIPDFIGNWTKLKSLRFQGNSFQGPI 225 (866)
Q Consensus 146 ~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~ 225 (866)
+|.+++. ...++|++|++++|++++..+. .+++|++|++++|++++..+..+..+++|++|+|++|.+++..
T Consensus 89 ~n~l~~l-----~~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 160 (317)
T 3o53_A 89 NNYVQEL-----LVGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVN 160 (317)
T ss_dssp SSEEEEE-----EECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEE
T ss_pred CCccccc-----cCCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCccc
Confidence 8887643 2347888888888887765543 3567788888888887766667777777888888887777655
Q ss_pred chhhc-CCCCCCEEEccCccCCCCCchhhhcCCCCCceeccCcccccCCCcccCCCCCcCEEeeecCcCcccCCcccCCC
Q 038019 226 PSSLS-KLASLESLQMSDIYNVSSSLDFVMSLKNLTDLSLRNALITGTIPFGIGELQMLQILDLSFNNLTGQIPATLFNI 304 (866)
Q Consensus 226 p~~~~-~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l 304 (866)
+..+. .+++|+.|++++|.+. +. + ....+++|+.|+|++|++++. |..+..+
T Consensus 161 ~~~~~~~l~~L~~L~L~~N~l~------------------------~~-~-~~~~l~~L~~L~Ls~N~l~~l-~~~~~~l 213 (317)
T 3o53_A 161 FAELAASSDTLEHLNLQYNFIY------------------------DV-K-GQVVFAKLKTLDLSSNKLAFM-GPEFQSA 213 (317)
T ss_dssp GGGGGGGTTTCCEEECTTSCCC------------------------EE-E-CCCCCTTCCEEECCSSCCCEE-CGGGGGG
T ss_pred HHHHhhccCcCCEEECCCCcCc------------------------cc-c-cccccccCCEEECCCCcCCcc-hhhhccc
Confidence 55543 5566666666655543 22 1 112245555555555555532 2235555
Q ss_pred CCCcEEECcCCCCcccCCccc--CCCCCEEEeeCCCCC-CccCcccc
Q 038019 305 DSLEYLFLGNNSLSGTLPDQK--SENLQKIDLSHNHLS-GTFPLWVN 348 (866)
Q Consensus 305 ~~L~~L~L~~N~l~g~~p~~~--~~~L~~L~Ls~N~l~-g~~p~~~~ 348 (866)
++|++|+|++|++++ +|... .++|+.|++++|+++ +.+|.++.
T Consensus 214 ~~L~~L~L~~N~l~~-l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~ 259 (317)
T 3o53_A 214 AGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFS 259 (317)
T ss_dssp TTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCCBHHHHHHHHH
T ss_pred CcccEEECcCCcccc-hhhHhhcCCCCCEEEccCCCccCcCHHHHHh
Confidence 555555555555553 22221 245556666666655 44444443
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.92 E-value=4.2e-24 Score=226.55 Aligned_cols=212 Identities=19% Similarity=0.239 Sum_probs=161.2
Q ss_pred CCeeccccCCCCCeeeEEEEEEcccCcCCCCCcccCCCCCCCEEEccCCCCCCCCCccccCCCCcCEEeccCCcCCCCCC
Q 038019 51 PAIVCNCTFDNGATCHITKLRVYGLNKKGVIPEELVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVP 130 (866)
Q Consensus 51 ~~v~C~~~~~~~~~~~v~~L~l~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p 130 (866)
.|+.|.|.. +.+.+++++++++. +|..+. ++|++|+|++|.+++..+..|.++++|++|+|++|.++...+
T Consensus 8 ~~~~C~c~~------~~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~ 78 (270)
T 2o6q_A 8 DGGVCSCNN------NKNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPA 78 (270)
T ss_dssp GTCSBEEET------TTTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCT
T ss_pred CCCCCEeCC------CCCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeCh
Confidence 578888742 34678888888884 666554 578999999999987777788999999999999999986666
Q ss_pred ccccCCCCCCEeeccCCCCCCCCchhhcCCCCccEEEeecCCCCCCChhhhhcCcCCCEEEecCCCCCCCCcccccCCCC
Q 038019 131 RELGNLKELTVLAFGTNNFSGALPPELGNLAKLEQLYIDSCGAGGEIPSTFAKLRNMQTLWASDNPFTGKIPDFIGNWTK 210 (866)
Q Consensus 131 ~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 210 (866)
..|.++++|++|+|++|.+++..+..+..+++|++|+|++|.+++..+..|..+++|++|+|++|.+++..+..|..+++
T Consensus 79 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 158 (270)
T 2o6q_A 79 GIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTS 158 (270)
T ss_dssp TTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred hhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcc
Confidence 67788999999999999988777777888888888888888888877777888888888888888888666666777888
Q ss_pred CCeEEccCCCCCCCCchhhcCCCCCCEEEccCccCCCCCchhhhcCCCCCceeccCcccccCCCcccCCCCCcCEEeeec
Q 038019 211 LKSLRFQGNSFQGPIPSSLSKLASLESLQMSDIYNVSSSLDFVMSLKNLTDLSLRNALITGTIPFGIGELQMLQILDLSF 290 (866)
Q Consensus 211 L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~ 290 (866)
|+.|+|++|.+++..+..|.++++|+.|++++ |.+++..+..+..+++|+.|+|++
T Consensus 159 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~------------------------N~l~~~~~~~~~~l~~L~~L~l~~ 214 (270)
T 2o6q_A 159 LKELRLYNNQLKRVPEGAFDKLTELKTLKLDN------------------------NQLKRVPEGAFDSLEKLKMLQLQE 214 (270)
T ss_dssp CCEEECCSSCCSCCCTTTTTTCTTCCEEECCS------------------------SCCSCCCTTTTTTCTTCCEEECCS
T ss_pred cceeEecCCcCcEeChhHhccCCCcCEEECCC------------------------CcCCcCCHHHhccccCCCEEEecC
Confidence 88888888877766555566655555555554 444444444556666677777777
Q ss_pred CcCcc
Q 038019 291 NNLTG 295 (866)
Q Consensus 291 N~l~~ 295 (866)
|.+..
T Consensus 215 N~~~c 219 (270)
T 2o6q_A 215 NPWDC 219 (270)
T ss_dssp SCBCC
T ss_pred CCeeC
Confidence 76653
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.91 E-value=6.8e-26 Score=246.27 Aligned_cols=242 Identities=19% Similarity=0.117 Sum_probs=177.4
Q ss_pred eeEEEEEEcccCcCCCCCcccCCCCCCCEEEccCCCCCCCCCccccCCCCcCEEeccCCcCCCCCCccccCCCCCCEeec
Q 038019 65 CHITKLRVYGLNKKGVIPEELVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKELTVLAF 144 (866)
Q Consensus 65 ~~v~~L~l~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 144 (866)
.+++.|++++|.+++..|..|.++++|++|+|++|.+++..+ +..+++|++|+|++|++++ +..+++|++|++
T Consensus 34 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~-----l~~~~~L~~L~l 106 (317)
T 3o53_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQE-----LLVGPSIETLHA 106 (317)
T ss_dssp GGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEE-----EEECTTCCEEEC
T ss_pred CCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccc-----ccCCCCcCEEEC
Confidence 479999999999999888999999999999999999987554 9999999999999999984 334489999999
Q ss_pred cCCCCCCCCchhhcCCCCccEEEeecCCCCCCChhhhhcCcCCCEEEecCCCCCCCCcccc-cCCCCCCeEEccCCCCCC
Q 038019 145 GTNNFSGALPPELGNLAKLEQLYIDSCGAGGEIPSTFAKLRNMQTLWASDNPFTGKIPDFI-GNWTKLKSLRFQGNSFQG 223 (866)
Q Consensus 145 s~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l-~~l~~L~~L~L~~N~l~~ 223 (866)
++|.+++..+. .+++|++|+|++|++++..+..+..+++|++|+|++|.+++..+..+ ..+++|++|+|++|.+++
T Consensus 107 ~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ 183 (317)
T 3o53_A 107 ANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD 183 (317)
T ss_dssp CSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred CCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcc
Confidence 99999876544 36889999999999999888899999999999999999998777776 478999999999999985
Q ss_pred CCchhhcCCCCCCEEEccCccCCCCCchhhhcCCCCCceeccCcccccCCCcccCCCCCcCEEeeecCcCcccCCcccCC
Q 038019 224 PIPSSLSKLASLESLQMSDIYNVSSSLDFVMSLKNLTDLSLRNALITGTIPFGIGELQMLQILDLSFNNLTGQIPATLFN 303 (866)
Q Consensus 224 ~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~ 303 (866)
. + ....+++|+.|++++|.+... |..+..+++|+.|+|++|+++ .+|..+..
T Consensus 184 ~-~-~~~~l~~L~~L~Ls~N~l~~l-------------------------~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~ 235 (317)
T 3o53_A 184 V-K-GQVVFAKLKTLDLSSNKLAFM-------------------------GPEFQSAAGVTWISLRNNKLV-LIEKALRF 235 (317)
T ss_dssp E-E-CCCCCTTCCEEECCSSCCCEE-------------------------CGGGGGGTTCSEEECTTSCCC-EECTTCCC
T ss_pred c-c-cccccccCCEEECCCCcCCcc-------------------------hhhhcccCcccEEECcCCccc-chhhHhhc
Confidence 4 2 222355566665555544432 222444555555555555555 34444555
Q ss_pred CCCCcEEECcCCCCc-ccCCccc--CCCCCEEEee-CCCCCCccC
Q 038019 304 IDSLEYLFLGNNSLS-GTLPDQK--SENLQKIDLS-HNHLSGTFP 344 (866)
Q Consensus 304 l~~L~~L~L~~N~l~-g~~p~~~--~~~L~~L~Ls-~N~l~g~~p 344 (866)
+++|+.|+|++|+++ +.+|... .+.|+.|+++ .+.++|..|
T Consensus 236 l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~ 280 (317)
T 3o53_A 236 SQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNE 280 (317)
T ss_dssp CTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSS
T ss_pred CCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCch
Confidence 555555555555555 3222211 2345555555 233444433
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.2e-25 Score=256.56 Aligned_cols=232 Identities=18% Similarity=0.153 Sum_probs=161.5
Q ss_pred CCCEEEccCCCCCCCCCccccCCCCcCEEeccCCcCCCCCCccccCCCCCCEeeccCCCCCCCCchhhcCCCCccEEEee
Q 038019 90 YLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKELTVLAFGTNNFSGALPPELGNLAKLEQLYID 169 (866)
Q Consensus 90 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~ 169 (866)
+|++|+|++|.+++..|..|+++++|++|+|++|.+++..| |..+++|++|+|++|.+++.. ..++|++|+|+
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~~L~L~ 107 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETLHAA 107 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-----ECTTCCEEECC
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-----CCCCcCEEECc
Confidence 67777777777776666677777777777777777765444 677777777777777766332 23677777777
Q ss_pred cCCCCCCChhhhhcCcCCCEEEecCCCCCCCCcccccCCCCCCeEEccCCCCCCCCchhhc-CCCCCCEEEccCccCCCC
Q 038019 170 SCGAGGEIPSTFAKLRNMQTLWASDNPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLS-KLASLESLQMSDIYNVSS 248 (866)
Q Consensus 170 ~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~-~l~~L~~L~l~~n~~~~~ 248 (866)
+|.+++..+. .+++|+.|+|++|.+++..|..++++++|+.|+|++|.+++.+|..+. .+++|+.|+|++|.+...
T Consensus 108 ~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~ 184 (487)
T 3oja_A 108 NNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV 184 (487)
T ss_dssp SSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE
T ss_pred CCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc
Confidence 7777665543 346677777777777766666777777777777777777766666665 677777777777766533
Q ss_pred CchhhhcCCCCCceeccCcccccCCCcccCCCCCcCEEeeecCcCcccCCcccCCCCCCcEEECcCCCCc-ccCCccc--
Q 038019 249 SLDFVMSLKNLTDLSLRNALITGTIPFGIGELQMLQILDLSFNNLTGQIPATLFNIDSLEYLFLGNNSLS-GTLPDQK-- 325 (866)
Q Consensus 249 ~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~-g~~p~~~-- 325 (866)
+....+++|+.|+|++|.+++..| .+..+++|+.|+|++|.+++ +|..+..+++|+.|++++|.+. +.+|...
T Consensus 185 --~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~ 260 (487)
T 3oja_A 185 --KGQVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSK 260 (487)
T ss_dssp --ECCCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTT
T ss_pred --cccccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHh
Confidence 223357788888888888886544 47788888888888888885 6777888888888888888887 4444322
Q ss_pred CCCCCEEEee
Q 038019 326 SENLQKIDLS 335 (866)
Q Consensus 326 ~~~L~~L~Ls 335 (866)
.+.|+.++++
T Consensus 261 l~~L~~l~~~ 270 (487)
T 3oja_A 261 NQRVQTVAKQ 270 (487)
T ss_dssp CHHHHHHHHH
T ss_pred CCCCcEEecc
Confidence 2456666665
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.91 E-value=5.5e-25 Score=253.15 Aligned_cols=224 Identities=20% Similarity=0.177 Sum_probs=191.8
Q ss_pred CCCCcCEEeccCCcCCCCCCccccCCCCCCEeeccCCCCCCCCchhhcCCCCccEEEeecCCCCCCChhhhhcCcCCCEE
Q 038019 111 NLSRLMFLSFSHNDFSGPVPRELGNLKELTVLAFGTNNFSGALPPELGNLAKLEQLYIDSCGAGGEIPSTFAKLRNMQTL 190 (866)
Q Consensus 111 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 190 (866)
.+++|++|+|++|.+++..|..|+.+++|++|+|++|.+++..| ++.+++|++|+|++|.+++.. ..++|++|
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~~L 104 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETL 104 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-----ECTTCCEE
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-----CCCCcCEE
Confidence 34589999999999999888999999999999999999987665 999999999999999987643 34899999
Q ss_pred EecCCCCCCCCcccccCCCCCCeEEccCCCCCCCCchhhcCCCCCCEEEccCccCCCCCchhhh-cCCCCCceeccCccc
Q 038019 191 WASDNPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLESLQMSDIYNVSSSLDFVM-SLKNLTDLSLRNALI 269 (866)
Q Consensus 191 ~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~-~l~~L~~L~L~~n~l 269 (866)
++++|.+++..+. .+++|+.|+|++|.+++..|..|.++++|+.|+|++|.+....+..+. .+++|+.|+|++|.+
T Consensus 105 ~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l 181 (487)
T 3oja_A 105 HAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI 181 (487)
T ss_dssp ECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCC
T ss_pred ECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcc
Confidence 9999999976554 457899999999999998898999999999999999998876666665 799999999999999
Q ss_pred ccCCCcccCCCCCcCEEeeecCcCcccCCcccCCCCCCcEEECcCCCCcccCCccc--CCCCCEEEeeCCCCC-CccCcc
Q 038019 270 TGTIPFGIGELQMLQILDLSFNNLTGQIPATLFNIDSLEYLFLGNNSLSGTLPDQK--SENLQKIDLSHNHLS-GTFPLW 346 (866)
Q Consensus 270 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~~p~~~--~~~L~~L~Ls~N~l~-g~~p~~ 346 (866)
++..+ +..+++|+.|+|++|.+++..| .+..+++|+.|+|++|.+++ +|... .++|+.|++++|+++ +.+|.+
T Consensus 182 ~~~~~--~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~ 257 (487)
T 3oja_A 182 YDVKG--QVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDF 257 (487)
T ss_dssp CEEEC--CCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHH
T ss_pred ccccc--cccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHH
Confidence 87633 4468999999999999997544 58899999999999999997 44433 478999999999998 556665
Q ss_pred cc
Q 038019 347 VN 348 (866)
Q Consensus 347 ~~ 348 (866)
+.
T Consensus 258 ~~ 259 (487)
T 3oja_A 258 FS 259 (487)
T ss_dssp HT
T ss_pred HH
Confidence 54
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1e-23 Score=224.29 Aligned_cols=225 Identities=19% Similarity=0.181 Sum_probs=153.0
Q ss_pred EEcccCcCCCCCcccCCCCCCCEEEccCCCCCCCCCccccCCCCcCEEeccCCcCCCCCCccccCCCCCCEeeccCCCCC
Q 038019 71 RVYGLNKKGVIPEELVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKELTVLAFGTNNFS 150 (866)
Q Consensus 71 ~l~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 150 (866)
+..+.+++ .+|..+. ++|++|+|++|.+++..+..|.++++|++|+|++|++++..+..|.++++|++|+|++|.++
T Consensus 13 ~c~~~~l~-~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 89 (276)
T 2z62_A 13 QCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89 (276)
T ss_dssp ECTTSCCS-SCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC
T ss_pred EecCCCcc-ccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccC
Confidence 33343433 3555553 47889999999988777778888889999999999888777778888888888888888888
Q ss_pred CCCchhhcCCCCccEEEeecCCCCCCChhhhhcCcCCCEEEecCCCCCCC-CcccccCCCCCCeEEccCCCCCCCCchhh
Q 038019 151 GALPPELGNLAKLEQLYIDSCGAGGEIPSTFAKLRNMQTLWASDNPFTGK-IPDFIGNWTKLKSLRFQGNSFQGPIPSSL 229 (866)
Q Consensus 151 ~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~-~p~~l~~l~~L~~L~L~~N~l~~~~p~~~ 229 (866)
+..+..|.++++|++|++++|.+++..+..+..+++|++|++++|.+++. +|..+.++++|++|+|++|++++..+..+
T Consensus 90 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 169 (276)
T 2z62_A 90 SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL 169 (276)
T ss_dssp EECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGG
T ss_pred ccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHh
Confidence 77777788888888888888888776666677777777777777777653 46777777777777777777765555444
Q ss_pred cCCCCCCEEEccCccCCCCCchhhhcCCCCC-ceeccCcccccCCCcccCCCCCcCEEeeecCcCcccCCcccCCCCCCc
Q 038019 230 SKLASLESLQMSDIYNVSSSLDFVMSLKNLT-DLSLRNALITGTIPFGIGELQMLQILDLSFNNLTGQIPATLFNIDSLE 308 (866)
Q Consensus 230 ~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~-~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~ 308 (866)
..+++|+ .|. .|++++|.+++..+..+. ..+|+.|+|++|++++..+..+..+++|+
T Consensus 170 ~~l~~L~---------------------~l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 227 (276)
T 2z62_A 170 RVLHQMP---------------------LLNLSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQ 227 (276)
T ss_dssp HHHHTCT---------------------TCCEEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCC
T ss_pred hhhhhcc---------------------ccceeeecCCCcccccCccccC-CCcccEEECCCCceeecCHhHhccccccc
Confidence 4433332 121 455556655544333332 23566666666666655444555566666
Q ss_pred EEECcCCCCccc
Q 038019 309 YLFLGNNSLSGT 320 (866)
Q Consensus 309 ~L~L~~N~l~g~ 320 (866)
.|+|++|++++.
T Consensus 228 ~L~l~~N~~~c~ 239 (276)
T 2z62_A 228 KIWLHTNPWDCS 239 (276)
T ss_dssp EEECCSSCBCCC
T ss_pred EEEccCCccccc
Confidence 666666655543
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.91 E-value=9.4e-24 Score=247.98 Aligned_cols=256 Identities=25% Similarity=0.238 Sum_probs=210.8
Q ss_pred eEEEEEEcccCcCCCCCcccCCCCCCCEEEccCCCCCCCCCccccCCCCcCEEeccCCcCCCCCCccccCCCCCCEeecc
Q 038019 66 HITKLRVYGLNKKGVIPEELVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKELTVLAFG 145 (866)
Q Consensus 66 ~v~~L~l~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls 145 (866)
+++.|++++|+++ .+|..+. ++|++|+|++|.|+ .+|. .+++|++|+|++|+|+ .+|. .+++|++|+|+
T Consensus 41 ~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls 109 (622)
T 3g06_A 41 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELSIF 109 (622)
T ss_dssp CCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEEC
T ss_pred CCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEECc
Confidence 4889999999998 7787776 79999999999998 4665 6789999999999998 4665 77999999999
Q ss_pred CCCCCCCCchhhcCCCCccEEEeecCCCCCCChhhhhcCcCCCEEEecCCCCCCCCcccccCCCCCCeEEccCCCCCCCC
Q 038019 146 TNNFSGALPPELGNLAKLEQLYIDSCGAGGEIPSTFAKLRNMQTLWASDNPFTGKIPDFIGNWTKLKSLRFQGNSFQGPI 225 (866)
Q Consensus 146 ~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~ 225 (866)
+|++++. |. .+++|+.|+|++|+++. +|. .+++|++|+|++|++++ +|. .+++|+.|++++|.+++ +
T Consensus 110 ~N~l~~l-~~---~l~~L~~L~L~~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~-l 176 (622)
T 3g06_A 110 SNPLTHL-PA---LPSGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLAS-LPA---LPSELCKLWAYNNQLTS-L 176 (622)
T ss_dssp SCCCCCC-CC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-C
T ss_pred CCcCCCC-CC---CCCCcCEEECCCCCCCc-CCC---CCCCCCEEECcCCcCCC-cCC---ccCCCCEEECCCCCCCC-C
Confidence 9999864 44 67899999999999987 444 35899999999999985 454 34689999999999996 5
Q ss_pred chhhcCCCCCCEEEccCccCCCCCchhhhcCCCCCceeccCcccccCCCcccCCCCCcCEEeeecCcCcccCCcccCCCC
Q 038019 226 PSSLSKLASLESLQMSDIYNVSSSLDFVMSLKNLTDLSLRNALITGTIPFGIGELQMLQILDLSFNNLTGQIPATLFNID 305 (866)
Q Consensus 226 p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~ 305 (866)
| ..+++|+.|++++|.+..... .+++|+.|++++|.++. +|. .+++|+.|+|++|.|++ +| ..++
T Consensus 177 ~---~~~~~L~~L~Ls~N~l~~l~~----~~~~L~~L~L~~N~l~~-l~~---~~~~L~~L~Ls~N~L~~-lp---~~l~ 241 (622)
T 3g06_A 177 P---MLPSGLQELSVSDNQLASLPT----LPSELYKLWAYNNRLTS-LPA---LPSGLKELIVSGNRLTS-LP---VLPS 241 (622)
T ss_dssp C---CCCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSS-CCC---CCTTCCEEECCSSCCSC-CC---CCCT
T ss_pred c---ccCCCCcEEECCCCCCCCCCC----ccchhhEEECcCCcccc-cCC---CCCCCCEEEccCCccCc-CC---CCCC
Confidence 5 557899999999998875332 35789999999999984 443 34889999999999986 55 4568
Q ss_pred CCcEEECcCCCCcccCCcccCCCCCEEEeeCCCCCCccCcccccc--c-cccccccccccc
Q 038019 306 SLEYLFLGNNSLSGTLPDQKSENLQKIDLSHNHLSGTFPLWVNSE--L-QMNLAVNNFKFD 363 (866)
Q Consensus 306 ~L~~L~L~~N~l~g~~p~~~~~~L~~L~Ls~N~l~g~~p~~~~~~--~-~l~l~~N~~~~~ 363 (866)
+|+.|+|++|+++. +|. ..++|+.|+|++|+|+ .+|..+... + .|+|++|++++.
T Consensus 242 ~L~~L~Ls~N~L~~-lp~-~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~ 299 (622)
T 3g06_A 242 ELKELMVSGNRLTS-LPM-LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSER 299 (622)
T ss_dssp TCCEEECCSSCCSC-CCC-CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHH
T ss_pred cCcEEECCCCCCCc-CCc-ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCc
Confidence 99999999999994 555 6689999999999999 778766532 3 389999998764
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=6.1e-24 Score=226.04 Aligned_cols=208 Identities=17% Similarity=0.125 Sum_probs=175.1
Q ss_pred eeeEEEEEEcccCcCCCCCcccCCCCCCCEEEccCCCCCCCCCccccCCCCcCEEeccCCcCCCCCCccccCCCCCCEee
Q 038019 64 TCHITKLRVYGLNKKGVIPEELVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKELTVLA 143 (866)
Q Consensus 64 ~~~v~~L~l~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 143 (866)
..+++.|++++|++++..+..|.++++|++|+|++|.+++..+..|.++++|++|+|++|.+++..+..|.++++|++|+
T Consensus 27 ~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (276)
T 2z62_A 27 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 106 (276)
T ss_dssp CTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred CCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEE
Confidence 34699999999999988888999999999999999999988888899999999999999999988889999999999999
Q ss_pred ccCCCCCCCCchhhcCCCCccEEEeecCCCCCC-ChhhhhcCcCCCEEEecCCCCCCCCcccccCCCCCC----eEEccC
Q 038019 144 FGTNNFSGALPPELGNLAKLEQLYIDSCGAGGE-IPSTFAKLRNMQTLWASDNPFTGKIPDFIGNWTKLK----SLRFQG 218 (866)
Q Consensus 144 Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~-~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~----~L~L~~ 218 (866)
+++|.+++..+..++.+++|++|+|++|.+++. +|..|..+++|++|+|++|++++..+..+..+++|+ .|++++
T Consensus 107 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~ 186 (276)
T 2z62_A 107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 186 (276)
T ss_dssp CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCS
T ss_pred CCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCC
Confidence 999999988777899999999999999999884 699999999999999999999987777787777776 788999
Q ss_pred CCCCCCCchhhcCCCCCCEEEccCccCCCCCchhhhcCCCCCceeccCcccccCCCcccCCCCCcCEEeeecCcCccc
Q 038019 219 NSFQGPIPSSLSKLASLESLQMSDIYNVSSSLDFVMSLKNLTDLSLRNALITGTIPFGIGELQMLQILDLSFNNLTGQ 296 (866)
Q Consensus 219 N~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 296 (866)
|.+++..+..+.. . +|+.|+|++|.+++..+..+..+++|+.|+|++|.+.+.
T Consensus 187 n~l~~~~~~~~~~-~------------------------~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 239 (276)
T 2z62_A 187 NPMNFIQPGAFKE-I------------------------RLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 239 (276)
T ss_dssp SCCCEECTTSSCS-C------------------------CEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCC
T ss_pred CcccccCccccCC-C------------------------cccEEECCCCceeecCHhHhcccccccEEEccCCccccc
Confidence 9888554433332 2 445555566666655555566777777777777777643
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.90 E-value=2.1e-22 Score=213.48 Aligned_cols=205 Identities=21% Similarity=0.237 Sum_probs=162.5
Q ss_pred CCCEEEccCCCCCCCCCccccCCCCcCEEeccCCcCCCCCCccccCCCCCCEeeccCCCCCCCCchhhcCCCCccEEEee
Q 038019 90 YLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKELTVLAFGTNNFSGALPPELGNLAKLEQLYID 169 (866)
Q Consensus 90 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~ 169 (866)
.++.++++++.++ .+|..+. ++|++|+|++|++++..+..|.++++|++|+|++|.++...+..|.++++|++|+|+
T Consensus 17 ~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 17 NKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred CCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence 4678999999988 4666554 678999999999987777788889999999999998886666667888888888888
Q ss_pred cCCCCCCChhhhhcCcCCCEEEecCCCCCCCCcccccCCCCCCeEEccCCCCCCCCchhhcCCCCCCEEEccCccCCCCC
Q 038019 170 SCGAGGEIPSTFAKLRNMQTLWASDNPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLESLQMSDIYNVSSS 249 (866)
Q Consensus 170 ~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~ 249 (866)
+|.+++..+..|..+++|++|+|++|++++..+..|..+++|++|+|++|.+++..+..|..+
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l----------------- 156 (270)
T 2o6q_A 94 DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKL----------------- 156 (270)
T ss_dssp SSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC-----------------
T ss_pred CCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCC-----------------
Confidence 888887777777788888888888888877666677777777777777777775544444444
Q ss_pred chhhhcCCCCCceeccCcccccCCCcccCCCCCcCEEeeecCcCcccCCcccCCCCCCcEEECcCCCCcccC
Q 038019 250 LDFVMSLKNLTDLSLRNALITGTIPFGIGELQMLQILDLSFNNLTGQIPATLFNIDSLEYLFLGNNSLSGTL 321 (866)
Q Consensus 250 ~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~~ 321 (866)
++|+.|+|++|.+++..+..|..+++|+.|+|++|++++..+..+..+++|+.|+|++|.+....
T Consensus 157 -------~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 221 (270)
T 2o6q_A 157 -------TSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTC 221 (270)
T ss_dssp -------TTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSS
T ss_pred -------cccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCC
Confidence 45555566666666666667888999999999999999877778899999999999999987543
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
Probab=99.90 E-value=3.8e-26 Score=261.82 Aligned_cols=299 Identities=16% Similarity=0.107 Sum_probs=210.8
Q ss_pred eeEEEEEEcccCcCCCCCccc-CCCC----CCCEEEccCCCCCC----CCCccccCCCCcCEEeccCCcCCCCCCccc--
Q 038019 65 CHITKLRVYGLNKKGVIPEEL-VTLQ----YLTVLKIDQNFFTG----PLPSFIGNLSRLMFLSFSHNDFSGPVPREL-- 133 (866)
Q Consensus 65 ~~v~~L~l~~~~l~~~~p~~l-~~l~----~L~~L~Ls~n~l~~----~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l-- 133 (866)
.++++|++++|.++...+..+ ..+. +|++|+|++|.++. .++..+.++++|++|+|++|.+++..+..+
T Consensus 56 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~ 135 (461)
T 1z7x_W 56 PALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCE 135 (461)
T ss_dssp TTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHH
T ss_pred CCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHH
Confidence 368888888888776544333 2344 68888888888874 457778888888888888888865434333
Q ss_pred ---cCCCCCCEeeccCCCCCCCC----chhhcCCCCccEEEeecCCCCCCChhhhh-----cCcCCCEEEecCCCCCCC-
Q 038019 134 ---GNLKELTVLAFGTNNFSGAL----PPELGNLAKLEQLYIDSCGAGGEIPSTFA-----KLRNMQTLWASDNPFTGK- 200 (866)
Q Consensus 134 ---~~l~~L~~L~Ls~N~l~~~~----p~~l~~l~~L~~L~L~~n~l~~~~p~~~~-----~l~~L~~L~L~~N~l~~~- 200 (866)
..+++|++|+|++|.+++.. +..+..+++|++|+|++|.++...+..+. .+++|++|++++|.+++.
T Consensus 136 ~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~ 215 (461)
T 1z7x_W 136 GLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDN 215 (461)
T ss_dssp HHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTH
T ss_pred HHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHH
Confidence 23567888888888887643 55667778888888888887665444443 256888888888888764
Q ss_pred ---CcccccCCCCCCeEEccCCCCCCCC-----chhhcCCCCCCEEEccCccCCCCC----chhhhcCCCCCceeccCcc
Q 038019 201 ---IPDFIGNWTKLKSLRFQGNSFQGPI-----PSSLSKLASLESLQMSDIYNVSSS----LDFVMSLKNLTDLSLRNAL 268 (866)
Q Consensus 201 ---~p~~l~~l~~L~~L~L~~N~l~~~~-----p~~~~~l~~L~~L~l~~n~~~~~~----~~~~~~l~~L~~L~L~~n~ 268 (866)
++..+..+++|++|+|++|.+.... +..+..+++|+.|++++|.+.... ...+..+++|++|+|++|.
T Consensus 216 ~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 295 (461)
T 1z7x_W 216 CRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNE 295 (461)
T ss_dssp HHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCC
T ss_pred HHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCC
Confidence 5667777888888888888876432 223335788888888888776432 3345668888888888888
Q ss_pred cccCCCcccC-----CCCCcCEEeeecCcCccc----CCcccCCCCCCcEEECcCCCCcccCCccc-------CCCCCEE
Q 038019 269 ITGTIPFGIG-----ELQMLQILDLSFNNLTGQ----IPATLFNIDSLEYLFLGNNSLSGTLPDQK-------SENLQKI 332 (866)
Q Consensus 269 l~~~~p~~~~-----~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~L~~N~l~g~~p~~~-------~~~L~~L 332 (866)
+++..+..+. ..++|+.|++++|.+++. ++..+..+++|++|+|++|.+++..+... .++|+.|
T Consensus 296 i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L 375 (461)
T 1z7x_W 296 LGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVL 375 (461)
T ss_dssp CHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEE
T ss_pred CchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEE
Confidence 8754333222 236888888888888765 45666677888888888888875432211 3578888
Q ss_pred EeeCCCCCC----ccCcccc--ccc-cccccccccccc
Q 038019 333 DLSHNHLSG----TFPLWVN--SEL-QMNLAVNNFKFD 363 (866)
Q Consensus 333 ~Ls~N~l~g----~~p~~~~--~~~-~l~l~~N~~~~~ 363 (866)
+|++|++++ .+|..+. ..+ .|++++|+++..
T Consensus 376 ~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~ 413 (461)
T 1z7x_W 376 WLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDA 413 (461)
T ss_dssp ECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHH
T ss_pred ECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHH
Confidence 888888886 5666543 223 388888887643
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
Probab=99.89 E-value=8.5e-23 Score=216.68 Aligned_cols=209 Identities=18% Similarity=0.167 Sum_probs=111.9
Q ss_pred CCCCCCCEEEccCCCCCCCCCccccCCCCcCEEeccCCcCCCCCCccccCCCCCCEeeccCCCCCCCCchhhcCCCCccE
Q 038019 86 VTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKELTVLAFGTNNFSGALPPELGNLAKLEQ 165 (866)
Q Consensus 86 ~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~ 165 (866)
..+++|+.|++++|.++. + ..+..+++|++|+|++|.+++. ..+..+++|++|+|++|.+++..+..+.++++|++
T Consensus 38 ~~l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 113 (272)
T 3rfs_A 38 NELNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKE 113 (272)
T ss_dssp HHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred ccccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCE
Confidence 344555555555555542 2 2245555555555555555431 24555555555555555555444444555555555
Q ss_pred EEeecCCCCCCChhhhhcCcCCCEEEecCCCCCCCCcccccCCCCCCeEEccCCCCCCCCchhhcCCCCCCEEEccCccC
Q 038019 166 LYIDSCGAGGEIPSTFAKLRNMQTLWASDNPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLESLQMSDIYN 245 (866)
Q Consensus 166 L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~n~~ 245 (866)
|+|++|++++..+..|..+++|++|+|++|++++..+..+..+++|+.|+|++|++++..+..|..+++|+.|++++|.+
T Consensus 114 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l 193 (272)
T 3rfs_A 114 LVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQL 193 (272)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcC
Confidence 55555555555555555555555555555555544444455555555555555555544444455555555555555555
Q ss_pred CCCCchhhhcCCCCCceeccCcccccCCCcccCCCCCcCEEeeecCcCcccCCcccCCCC
Q 038019 246 VSSSLDFVMSLKNLTDLSLRNALITGTIPFGIGELQMLQILDLSFNNLTGQIPATLFNID 305 (866)
Q Consensus 246 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~ 305 (866)
.......+..+++|+.|+|++|.+.+. +++|+.|+++.|.++|.+|..++.++
T Consensus 194 ~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~~~~~~ 246 (272)
T 3rfs_A 194 KSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSAGSVA 246 (272)
T ss_dssp SCCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCTTSCBC
T ss_pred CccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCcccccC
Confidence 544444455555566666666655432 33566666666666666666665544
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
Probab=99.89 E-value=4.2e-23 Score=218.99 Aligned_cols=221 Identities=20% Similarity=0.189 Sum_probs=146.1
Q ss_pred CCEEEccCCCCCCCCCccccCCCCcCEEeccCCcCCCCCCccccCCCCCCEeeccCCCCCCCCchhhcCCCCccEEEeec
Q 038019 91 LTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKELTVLAFGTNNFSGALPPELGNLAKLEQLYIDS 170 (866)
Q Consensus 91 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~ 170 (866)
+..+++..+.+... ..+..+++|+.|++++|.++. + ..+..+++|++|+|++|.+++. ..+..+++|++|+|++
T Consensus 21 l~~l~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~ 94 (272)
T 3rfs_A 21 TIKANLKKKSVTDA--VTQNELNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTG 94 (272)
T ss_dssp HHHHHHTCSCTTSE--ECHHHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTT
T ss_pred HHHHHhcCcccccc--cccccccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCC
Confidence 34455555555432 234566677777777776652 2 3466677777777777777652 3666777777777777
Q ss_pred CCCCCCChhhhhcCcCCCEEEecCCCCCCCCcccccCCCCCCeEEccCCCCCCCCchhhcCCCCCCEEEccCccCCCCCc
Q 038019 171 CGAGGEIPSTFAKLRNMQTLWASDNPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLESLQMSDIYNVSSSL 250 (866)
Q Consensus 171 n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~ 250 (866)
|.+++..+..|.++++|++|+|++|++++..+..+.++++|++|+|++|.+++..+..|.++++|+.|++++|.+.....
T Consensus 95 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 174 (272)
T 3rfs_A 95 NQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPE 174 (272)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred CccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCH
Confidence 77776666666777777777777777776666666677777777777777776666666677777777777776665555
Q ss_pred hhhhcCCCCCceeccCcccccCCCcccCCCCCcCEEeeecCcCcccCCcccCCCCCCcEEECcCCCCcccCCcc
Q 038019 251 DFVMSLKNLTDLSLRNALITGTIPFGIGELQMLQILDLSFNNLTGQIPATLFNIDSLEYLFLGNNSLSGTLPDQ 324 (866)
Q Consensus 251 ~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~~p~~ 324 (866)
..+..+++|+.|+|++|.+++..+..+..+++|+.|++++|.+.+. +++|+.|+++.|.++|.+|..
T Consensus 175 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~ 241 (272)
T 3rfs_A 175 GVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNS 241 (272)
T ss_dssp TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCT
T ss_pred HHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCc
Confidence 5566677777777777777766666667777777777777766533 445666777777777766654
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
Probab=99.89 E-value=5.1e-26 Score=260.78 Aligned_cols=277 Identities=17% Similarity=0.152 Sum_probs=134.5
Q ss_pred eEEEEEEcccCcCCCCCcc-cCCCCCCCEEEccCCCCCC----CCCccccCCCCcCEEeccCCcCCCCCCccc-cCCC--
Q 038019 66 HITKLRVYGLNKKGVIPEE-LVTLQYLTVLKIDQNFFTG----PLPSFIGNLSRLMFLSFSHNDFSGPVPREL-GNLK-- 137 (866)
Q Consensus 66 ~v~~L~l~~~~l~~~~p~~-l~~l~~L~~L~Ls~n~l~~----~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l-~~l~-- 137 (866)
++++|++++++++...... +..+++|++|+|++|.+++ .++..+..+++|++|+|++|.+++..+..+ ..++
T Consensus 4 ~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~ 83 (461)
T 1z7x_W 4 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP 83 (461)
T ss_dssp EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred cceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhC
Confidence 4555666555554432222 4455556666666655543 234445555556666666655543222222 1233
Q ss_pred --CCCEeeccCCCCCC----CCchhhcCCCCccEEEeecCCCCCCChhhhhc-----CcCCCEEEecCCCCCCC----Cc
Q 038019 138 --ELTVLAFGTNNFSG----ALPPELGNLAKLEQLYIDSCGAGGEIPSTFAK-----LRNMQTLWASDNPFTGK----IP 202 (866)
Q Consensus 138 --~L~~L~Ls~N~l~~----~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~-----l~~L~~L~L~~N~l~~~----~p 202 (866)
+|++|+|++|.++. .++..+..+++|++|+|++|.++...+..+.. +++|++|+|++|.+++. ++
T Consensus 84 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~ 163 (461)
T 1z7x_W 84 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLA 163 (461)
T ss_dssp TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred CCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHH
Confidence 45566666655552 33555555556666666555554433332221 33455666665555542 23
Q ss_pred ccccCCCCCCeEEccCCCCCCCCchhhc-----CCCCCCEEEccCccCCCCC----chhhhcCCCCCceeccCcccccCC
Q 038019 203 DFIGNWTKLKSLRFQGNSFQGPIPSSLS-----KLASLESLQMSDIYNVSSS----LDFVMSLKNLTDLSLRNALITGTI 273 (866)
Q Consensus 203 ~~l~~l~~L~~L~L~~N~l~~~~p~~~~-----~l~~L~~L~l~~n~~~~~~----~~~~~~l~~L~~L~L~~n~l~~~~ 273 (866)
..+..+++|++|+|++|.+....+..+. .+++|+.|++++|.+.... ...+..+++|+.|+|++|.+++..
T Consensus 164 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~ 243 (461)
T 1z7x_W 164 SVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVG 243 (461)
T ss_dssp HHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHH
T ss_pred HHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHH
Confidence 3444455556666655555433222222 2345555555555544322 223444555555555555554321
Q ss_pred -----CcccCCCCCcCEEeeecCcCccc----CCcccCCCCCCcEEECcCCCCcccCCcc-------cCCCCCEEEeeCC
Q 038019 274 -----PFGIGELQMLQILDLSFNNLTGQ----IPATLFNIDSLEYLFLGNNSLSGTLPDQ-------KSENLQKIDLSHN 337 (866)
Q Consensus 274 -----p~~~~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~L~~N~l~g~~p~~-------~~~~L~~L~Ls~N 337 (866)
+..+..+++|+.|++++|.+++. ++..+..+++|++|+|++|.+++..+.. ..++|+.|++++|
T Consensus 244 ~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n 323 (461)
T 1z7x_W 244 MAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSC 323 (461)
T ss_dssp HHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred HHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCC
Confidence 11222355555555555555542 3444444555555555555554321111 0135555555555
Q ss_pred CCCCc
Q 038019 338 HLSGT 342 (866)
Q Consensus 338 ~l~g~ 342 (866)
.+++.
T Consensus 324 ~l~~~ 328 (461)
T 1z7x_W 324 SFTAA 328 (461)
T ss_dssp CCBGG
T ss_pred CCchH
Confidence 55544
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.89 E-value=8.2e-22 Score=231.51 Aligned_cols=243 Identities=24% Similarity=0.248 Sum_probs=202.9
Q ss_pred eeEEEEEEcccCcCCCCCcccCCCCCCCEEEccCCCCCCCCCccccCCCCcCEEeccCCcCCCCCCccccCCCCCCEeec
Q 038019 65 CHITKLRVYGLNKKGVIPEELVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKELTVLAF 144 (866)
Q Consensus 65 ~~v~~L~l~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 144 (866)
.+++.|++++|+++. +|. .+++|++|+|++|+|++ +|. .+++|++|+|++|.+++ +|. .+++|++|+|
T Consensus 61 ~~L~~L~L~~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-l~~---~l~~L~~L~L 128 (622)
T 3g06_A 61 AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLTS-LPV---LPPGLLELSIFSNPLTH-LPA---LPSGLCKLWI 128 (622)
T ss_dssp TTCSEEEECSCCCSC-CCC---CCTTCCEEEECSCCCSC-CCC---CCTTCCEEEECSCCCCC-CCC---CCTTCCEEEC
T ss_pred CCCcEEEecCCCCCC-CCC---cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEECcCCcCCC-CCC---CCCCcCEEEC
Confidence 579999999999984 665 57899999999999984 665 78999999999999985 454 6789999999
Q ss_pred cCCCCCCCCchhhcCCCCccEEEeecCCCCCCChhhhhcCcCCCEEEecCCCCCCCCcccccCCCCCCeEEccCCCCCCC
Q 038019 145 GTNNFSGALPPELGNLAKLEQLYIDSCGAGGEIPSTFAKLRNMQTLWASDNPFTGKIPDFIGNWTKLKSLRFQGNSFQGP 224 (866)
Q Consensus 145 s~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ 224 (866)
++|+++. +|.. +++|++|+|++|.+++. |. .+.+|+.|++++|.+++ +| ..+++|+.|+|++|.+++
T Consensus 129 ~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~l-~~---~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~- 195 (622)
T 3g06_A 129 FGNQLTS-LPVL---PPGLQELSVSDNQLASL-PA---LPSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLAS- 195 (622)
T ss_dssp CSSCCSC-CCCC---CTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-
T ss_pred CCCCCCc-CCCC---CCCCCEEECcCCcCCCc-CC---ccCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCCC-
Confidence 9999985 5543 58999999999999864 43 35789999999999995 55 457899999999999996
Q ss_pred CchhhcCCCCCCEEEccCccCCCCCchhhhcCCCCCceeccCcccccCCCcccCCCCCcCEEeeecCcCcccCCcccCCC
Q 038019 225 IPSSLSKLASLESLQMSDIYNVSSSLDFVMSLKNLTDLSLRNALITGTIPFGIGELQMLQILDLSFNNLTGQIPATLFNI 304 (866)
Q Consensus 225 ~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l 304 (866)
+|. .+++|+.|++++|.+..... .+++|+.|+|++|.+++ +| ..+++|+.|+|++|.|+ .+|. .+
T Consensus 196 l~~---~~~~L~~L~L~~N~l~~l~~----~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~ 260 (622)
T 3g06_A 196 LPT---LPSELYKLWAYNNRLTSLPA----LPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LP 260 (622)
T ss_dssp CCC---CCTTCCEEECCSSCCSSCCC----CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CC
T ss_pred CCC---ccchhhEEECcCCcccccCC----CCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---cc
Confidence 443 35789999999998875432 35889999999999986 45 45689999999999998 4555 67
Q ss_pred CCCcEEECcCCCCcccCCccc--CCCCCEEEeeCCCCCCccCcccc
Q 038019 305 DSLEYLFLGNNSLSGTLPDQK--SENLQKIDLSHNHLSGTFPLWVN 348 (866)
Q Consensus 305 ~~L~~L~L~~N~l~g~~p~~~--~~~L~~L~Ls~N~l~g~~p~~~~ 348 (866)
++|+.|+|++|+++ .+|... .++|+.|+|++|++++.+|..+.
T Consensus 261 ~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~ 305 (622)
T 3g06_A 261 SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALR 305 (622)
T ss_dssp TTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHH
T ss_pred ccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHH
Confidence 89999999999999 667643 48999999999999998887654
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
Probab=99.88 E-value=3.4e-22 Score=213.87 Aligned_cols=204 Identities=23% Similarity=0.196 Sum_probs=121.9
Q ss_pred cCCCCCCCEEEccCCCCCCCCCccccCCCCcCEEeccCCcCCCCCCccccCCCCCCEeeccCCCCCCCCchhhcCCCCcc
Q 038019 85 LVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKELTVLAFGTNNFSGALPPELGNLAKLE 164 (866)
Q Consensus 85 l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~ 164 (866)
+.++++|++|++++|.++ .+|..+. ++|++|+|++|.+++..+..|.++++|++|+|++|.+++..+ .+.+++|+
T Consensus 6 ~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~ 80 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLG 80 (290)
T ss_dssp EECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCC
T ss_pred ccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcCC
Confidence 455666666666666665 3444332 466666666666665556666666666666666666654322 14555566
Q ss_pred EEEeecCCCCCCChhhhhcCcCCCEEEecCCCCCCCCcccccCCCCCCeEEccCCCCCCCCchhhcCCCCCCEEEccCcc
Q 038019 165 QLYIDSCGAGGEIPSTFAKLRNMQTLWASDNPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLESLQMSDIY 244 (866)
Q Consensus 165 ~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~n~ 244 (866)
+|+|++|+++ .+|..+..+++|++|+|++|++++..+..|.++++|++|+|++|++++..+..|..+
T Consensus 81 ~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l------------ 147 (290)
T 1p9a_G 81 TLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPT------------ 147 (290)
T ss_dssp EEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTC------------
T ss_pred EEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccc------------
Confidence 6666655554 344445555555555555555555444555555555555555555554444334444
Q ss_pred CCCCCchhhhcCCCCCceeccCcccccCCCcccCCCCCcCEEeeecCcCcccCCcccCCCCCCcEEECcCCCCcc
Q 038019 245 NVSSSLDFVMSLKNLTDLSLRNALITGTIPFGIGELQMLQILDLSFNNLTGQIPATLFNIDSLEYLFLGNNSLSG 319 (866)
Q Consensus 245 ~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g 319 (866)
++|+.|+|++|.++...+..|..+++|+.|+|++|+++ .+|..+..+++|+.|+|++|.+..
T Consensus 148 ------------~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 148 ------------PKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp ------------TTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred ------------cCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccC
Confidence 44444455555555444445566777777777777776 566677777788888888888764
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
Probab=99.88 E-value=4.9e-22 Score=212.64 Aligned_cols=204 Identities=22% Similarity=0.195 Sum_probs=148.6
Q ss_pred cccCCCCcCEEeccCCcCCCCCCccccCCCCCCEeeccCCCCCCCCchhhcCCCCccEEEeecCCCCCCChhhhhcCcCC
Q 038019 108 FIGNLSRLMFLSFSHNDFSGPVPRELGNLKELTVLAFGTNNFSGALPPELGNLAKLEQLYIDSCGAGGEIPSTFAKLRNM 187 (866)
Q Consensus 108 ~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L 187 (866)
.+.++++|++|++++|+++ .+|..+. ++|++|+|++|.+++..+..|..+++|++|+|++|.+++..+. ..+++|
T Consensus 5 ~~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L 79 (290)
T 1p9a_G 5 EVSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVL 79 (290)
T ss_dssp EEECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTC
T ss_pred cccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcC
Confidence 3567778888888888877 4555553 5777777777777766667777777777777777776654332 556666
Q ss_pred CEEEecCCCCCCCCcccccCCCCCCeEEccCCCCCCCCchhhcCCCCCCEEEccCccCCCCCchhhhcCCCCCceeccCc
Q 038019 188 QTLWASDNPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLESLQMSDIYNVSSSLDFVMSLKNLTDLSLRNA 267 (866)
Q Consensus 188 ~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n 267 (866)
++|+|++|+++ .+|..+..+++|++|+|++|++++..+.. +..+++|+.|+|++|
T Consensus 80 ~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~------------------------~~~l~~L~~L~L~~N 134 (290)
T 1p9a_G 80 GTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGA------------------------LRGLGELQELYLKGN 134 (290)
T ss_dssp CEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSST------------------------TTTCTTCCEEECTTS
T ss_pred CEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHH------------------------HcCCCCCCEEECCCC
Confidence 66666666665 45555566666666666666665444444 444556666667777
Q ss_pred ccccCCCcccCCCCCcCEEeeecCcCcccCCcccCCCCCCcEEECcCCCCcccCCcccC--CCCCEEEeeCCCCCCc
Q 038019 268 LITGTIPFGIGELQMLQILDLSFNNLTGQIPATLFNIDSLEYLFLGNNSLSGTLPDQKS--ENLQKIDLSHNHLSGT 342 (866)
Q Consensus 268 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~~p~~~~--~~L~~L~Ls~N~l~g~ 342 (866)
.+++..+..|..+++|+.|+|++|+++...+..+..+++|++|+|++|+++ .+|.... ..|+.|+|++|++.+.
T Consensus 135 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C~ 210 (290)
T 1p9a_G 135 ELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCN 210 (290)
T ss_dssp CCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCS
T ss_pred CCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccCc
Confidence 777666677889999999999999999777777888999999999999999 5565443 6799999999999865
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.1e-23 Score=233.19 Aligned_cols=249 Identities=18% Similarity=0.147 Sum_probs=162.5
Q ss_pred EEEcccCcCCCCCcccCCCCCCCEEEccCCCCCCCCC----ccccCCC-CcCEEeccCCcCCCCCCccccCC-----CCC
Q 038019 70 LRVYGLNKKGVIPEELVTLQYLTVLKIDQNFFTGPLP----SFIGNLS-RLMFLSFSHNDFSGPVPRELGNL-----KEL 139 (866)
Q Consensus 70 L~l~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p----~~l~~l~-~L~~L~Ls~N~l~~~~p~~l~~l-----~~L 139 (866)
++++.|++++.+|..+...++|++|||++|.+++..+ ..|.+++ +|++|+|++|.+++..+..|..+ ++|
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 5677788888888777777778888888888887666 6677787 88888888888887777766664 888
Q ss_pred CEeeccCCCCCCCCchhhcC----C-CCccEEEeecCCCCCCChhhhhc-----CcCCCEEEecCCCCCCCC----cccc
Q 038019 140 TVLAFGTNNFSGALPPELGN----L-AKLEQLYIDSCGAGGEIPSTFAK-----LRNMQTLWASDNPFTGKI----PDFI 205 (866)
Q Consensus 140 ~~L~Ls~N~l~~~~p~~l~~----l-~~L~~L~L~~n~l~~~~p~~~~~-----l~~L~~L~L~~N~l~~~~----p~~l 205 (866)
++|+|++|.+++..+..+.. + ++|++|+|++|.+++..+..+.. .++|++|+|++|.+++.. +..+
T Consensus 83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l 162 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQIL 162 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHH
T ss_pred cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHH
Confidence 88888888888766664443 3 78888888888887776655443 257888888888877543 3334
Q ss_pred cCCC-CCCeEEccCCCCCCCCchhh----cCC-CCCCEEEccCccCCCCCch----hhhc-CCCCCceeccCcccccCCC
Q 038019 206 GNWT-KLKSLRFQGNSFQGPIPSSL----SKL-ASLESLQMSDIYNVSSSLD----FVMS-LKNLTDLSLRNALITGTIP 274 (866)
Q Consensus 206 ~~l~-~L~~L~L~~N~l~~~~p~~~----~~l-~~L~~L~l~~n~~~~~~~~----~~~~-l~~L~~L~L~~n~l~~~~p 274 (866)
..++ +|++|+|++|.+++..+..+ ..+ ++|+.|+|++|.+...... .+.. .++|+.|+|++|.+++..+
T Consensus 163 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~ 242 (362)
T 3goz_A 163 AAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSL 242 (362)
T ss_dssp HTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCH
T ss_pred hcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHH
Confidence 4554 78888888888876655433 334 4777777777766543332 2222 3466666666666655432
Q ss_pred ----cccCCCCCcCEEeeecCcCccc-------CCcccCCCCCCcEEECcCCCCc
Q 038019 275 ----FGIGELQMLQILDLSFNNLTGQ-------IPATLFNIDSLEYLFLGNNSLS 318 (866)
Q Consensus 275 ----~~~~~l~~L~~L~Ls~N~l~~~-------~p~~l~~l~~L~~L~L~~N~l~ 318 (866)
..+..+++|+.|+|++|.+.+. ++..+..+++|+.|++++|++.
T Consensus 243 ~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~ 297 (362)
T 3goz_A 243 ENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIH 297 (362)
T ss_dssp HHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCC
T ss_pred HHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCC
Confidence 2334555666666666653322 1223344444444444444444
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=99.88 E-value=8e-24 Score=231.86 Aligned_cols=253 Identities=18% Similarity=0.204 Sum_probs=157.6
Q ss_pred EEEEEEcccCcCCCCCcccCCC--CCCCEEEccCCCCCCCCCccccCCCCcCEEeccCCcCCCC-CCccccCCCCCCEee
Q 038019 67 ITKLRVYGLNKKGVIPEELVTL--QYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGP-VPRELGNLKELTVLA 143 (866)
Q Consensus 67 v~~L~l~~~~l~~~~p~~l~~l--~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~L~ 143 (866)
++.|+++++.+. +..+..+ ++|+.|++++|.+.+..+. +.++++|++|+|++|.+++. +|..+..+++|++|+
T Consensus 49 ~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~ 124 (336)
T 2ast_B 49 WQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS 124 (336)
T ss_dssp SSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred heeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEe
Confidence 456777766655 4445555 6777777777777665544 45677777777777776654 566666777777777
Q ss_pred ccCCCCCCCCchhhcCCCCccEEEeecC-CCCCC-ChhhhhcCcCCCEEEecCC-CCCCC-CcccccCCC-CCCeEEccC
Q 038019 144 FGTNNFSGALPPELGNLAKLEQLYIDSC-GAGGE-IPSTFAKLRNMQTLWASDN-PFTGK-IPDFIGNWT-KLKSLRFQG 218 (866)
Q Consensus 144 Ls~N~l~~~~p~~l~~l~~L~~L~L~~n-~l~~~-~p~~~~~l~~L~~L~L~~N-~l~~~-~p~~l~~l~-~L~~L~L~~ 218 (866)
|++|.+++..+..++.+++|++|+|++| .+++. ++..+.++++|++|++++| .+++. ++..+..++ +|++|+|++
T Consensus 125 L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~ 204 (336)
T 2ast_B 125 LEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSG 204 (336)
T ss_dssp CTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCS
T ss_pred CcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCC
Confidence 7777766666666666777777777666 45542 4555666666666666666 66543 445555566 666666666
Q ss_pred C--CCC-CCCchhhcCCCCCCEEEccCccCCCCCchhhhcCCCCCceeccCcc-cccCCCcccCCCCCcCEEeeecCc-C
Q 038019 219 N--SFQ-GPIPSSLSKLASLESLQMSDIYNVSSSLDFVMSLKNLTDLSLRNAL-ITGTIPFGIGELQMLQILDLSFNN-L 293 (866)
Q Consensus 219 N--~l~-~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~p~~~~~l~~L~~L~Ls~N~-l 293 (866)
| .++ +.++..+ ..+++|+.|++++|. +++..+..+..+++|+.|++++|. +
T Consensus 205 ~~~~~~~~~l~~~~------------------------~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~ 260 (336)
T 2ast_B 205 YRKNLQKSDLSTLV------------------------RRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDI 260 (336)
T ss_dssp CGGGSCHHHHHHHH------------------------HHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTC
T ss_pred CcccCCHHHHHHHH------------------------hhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCC
Confidence 6 233 2233333 445555566666665 555555566677777777777774 3
Q ss_pred cccCCcccCCCCCCcEEECcCCCCcccCCcccCCCCCEEEeeCCCCCCccCcccc
Q 038019 294 TGQIPATLFNIDSLEYLFLGNNSLSGTLPDQKSENLQKIDLSHNHLSGTFPLWVN 348 (866)
Q Consensus 294 ~~~~p~~l~~l~~L~~L~L~~N~l~g~~p~~~~~~L~~L~Ls~N~l~g~~p~~~~ 348 (866)
.......+..+++|+.|+|++| ++...-......+..|++++|++++..|.++.
T Consensus 261 ~~~~~~~l~~~~~L~~L~l~~~-i~~~~~~~l~~~l~~L~l~~n~l~~~~~~~~~ 314 (336)
T 2ast_B 261 IPETLLELGEIPTLKTLQVFGI-VPDGTLQLLKEALPHLQINCSHFTTIARPTIG 314 (336)
T ss_dssp CGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHHHHSTTSEESCCCSCCTTCSSCS
T ss_pred CHHHHHHHhcCCCCCEEeccCc-cCHHHHHHHHhhCcceEEecccCccccCCccc
Confidence 3222235677888888888888 33211111123577788899999988887654
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
Probab=99.87 E-value=9e-24 Score=236.25 Aligned_cols=244 Identities=18% Similarity=0.196 Sum_probs=143.7
Q ss_pred CCcccCCCCCCCEEEccCCCCCCCCC----ccccCCCCcCEEeccCCc---CCCCCCccc-------cCCCCCCEeeccC
Q 038019 81 IPEELVTLQYLTVLKIDQNFFTGPLP----SFIGNLSRLMFLSFSHND---FSGPVPREL-------GNLKELTVLAFGT 146 (866)
Q Consensus 81 ~p~~l~~l~~L~~L~Ls~n~l~~~~p----~~l~~l~~L~~L~Ls~N~---l~~~~p~~l-------~~l~~L~~L~Ls~ 146 (866)
++..+..+++|++|+|++|.+++..+ ..|.++++|++|+|++|. +++.+|..+ ..+++|++|+|++
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~ 103 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD 103 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence 55566667777777777777765433 335667777777777753 334445444 5666666666666
Q ss_pred CCCCC----CCchhhcCCCCccEEEeecCCCCCCChhhhh----cC---------cCCCEEEecCCCCC-CCCc---ccc
Q 038019 147 NNFSG----ALPPELGNLAKLEQLYIDSCGAGGEIPSTFA----KL---------RNMQTLWASDNPFT-GKIP---DFI 205 (866)
Q Consensus 147 N~l~~----~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~----~l---------~~L~~L~L~~N~l~-~~~p---~~l 205 (866)
|.+++ .+|..+..+++|++|+|++|.++...+..+. .+ ++|++|+|++|+++ +.++ ..+
T Consensus 104 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l 183 (386)
T 2ca6_A 104 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF 183 (386)
T ss_dssp CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHH
Confidence 66665 2455556666666666666666433222222 22 55555555555554 2222 233
Q ss_pred cCCCCCCeEEccCCCCCCCCchhhcCCCCCCEEEccCccCCCCCch-hhhcCCCCCceeccCcccc----cCCCcccCCC
Q 038019 206 GNWTKLKSLRFQGNSFQGPIPSSLSKLASLESLQMSDIYNVSSSLD-FVMSLKNLTDLSLRNALIT----GTIPFGIGEL 280 (866)
Q Consensus 206 ~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~-~~~~l~~L~~L~L~~n~l~----~~~p~~~~~l 280 (866)
..+++|++|+|++|.+...-. ....+ .+..+++|+.|+|++|.++ ..+|..+..+
T Consensus 184 ~~~~~L~~L~L~~n~l~~~g~--------------------~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~ 243 (386)
T 2ca6_A 184 QSHRLLHTVKMVQNGIRPEGI--------------------EHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSW 243 (386)
T ss_dssp HHCTTCCEEECCSSCCCHHHH--------------------HHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGC
T ss_pred HhCCCcCEEECcCCCCCHhHH--------------------HHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccC
Confidence 444455555555554441000 00111 3445566666666666664 4455666777
Q ss_pred CCcCEEeeecCcCccc----CCccc--CCCCCCcEEECcCCCCcc----cCCccc---CCCCCEEEeeCCCCCCccC
Q 038019 281 QMLQILDLSFNNLTGQ----IPATL--FNIDSLEYLFLGNNSLSG----TLPDQK---SENLQKIDLSHNHLSGTFP 344 (866)
Q Consensus 281 ~~L~~L~Ls~N~l~~~----~p~~l--~~l~~L~~L~L~~N~l~g----~~p~~~---~~~L~~L~Ls~N~l~g~~p 344 (866)
++|+.|+|++|.+++. ++..+ ..+++|++|+|++|.+++ .+|... +++|+.|+|++|++++..+
T Consensus 244 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 244 PNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp TTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred CCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 7777777777777654 45555 337788888888888876 355533 4788888888888887664
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
Probab=99.86 E-value=9e-24 Score=236.24 Aligned_cols=240 Identities=19% Similarity=0.208 Sum_probs=159.0
Q ss_pred CCCccccCCCCcCEEeccCCcCCCCCC----ccccCCCCCCEeeccCCC---CCCCCchhh-------cCCCCccEEEee
Q 038019 104 PLPSFIGNLSRLMFLSFSHNDFSGPVP----RELGNLKELTVLAFGTNN---FSGALPPEL-------GNLAKLEQLYID 169 (866)
Q Consensus 104 ~~p~~l~~l~~L~~L~Ls~N~l~~~~p----~~l~~l~~L~~L~Ls~N~---l~~~~p~~l-------~~l~~L~~L~L~ 169 (866)
.++..+..+++|++|+|++|.++...+ ..|..+++|++|+|++|. +++.+|..+ ..+++|++|+|+
T Consensus 23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls 102 (386)
T 2ca6_A 23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS 102 (386)
T ss_dssp TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence 356667777888888888887775433 346677778888777753 334445444 455666666666
Q ss_pred cCCCCC----CChhhhhcCcCCCEEEecCCCCCCCCcccccCCCCCCeEEccCCCCCCCCchhhcCC---------CCCC
Q 038019 170 SCGAGG----EIPSTFAKLRNMQTLWASDNPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKL---------ASLE 236 (866)
Q Consensus 170 ~n~l~~----~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l---------~~L~ 236 (866)
+|.++. .+|..+..+++|++|+|++|.+++..+..+.. .+..+ ++|+
T Consensus 103 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~--------------------~l~~l~~~~~~~~~~~L~ 162 (386)
T 2ca6_A 103 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIAR--------------------ALQELAVNKKAKNAPPLR 162 (386)
T ss_dssp SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHH--------------------HHHHHHHHHHHHTCCCCC
T ss_pred CCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHH--------------------HHHHHhhhhhcccCCCCc
Confidence 666555 24445555555555555555554322222211 11112 4555
Q ss_pred EEEccCccCCCCCch----hhhcCCCCCceeccCccccc-----CCCcccCCCCCcCEEeeecCcCc----ccCCcccCC
Q 038019 237 SLQMSDIYNVSSSLD----FVMSLKNLTDLSLRNALITG-----TIPFGIGELQMLQILDLSFNNLT----GQIPATLFN 303 (866)
Q Consensus 237 ~L~l~~n~~~~~~~~----~~~~l~~L~~L~L~~n~l~~-----~~p~~~~~l~~L~~L~Ls~N~l~----~~~p~~l~~ 303 (866)
.|++++|.+...... .+..+++|+.|+|++|.++. ..+..+..+++|+.|+|++|.++ ..+|..+..
T Consensus 163 ~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~ 242 (386)
T 2ca6_A 163 SIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKS 242 (386)
T ss_dssp EEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGG
T ss_pred EEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHcc
Confidence 555555554422222 44566777778888887762 34447888999999999999996 578888999
Q ss_pred CCCCcEEECcCCCCccc----CCccc----CCCCCEEEeeCCCCCC----ccCccc-c--ccc-cccccccccccc
Q 038019 304 IDSLEYLFLGNNSLSGT----LPDQK----SENLQKIDLSHNHLSG----TFPLWV-N--SEL-QMNLAVNNFKFD 363 (866)
Q Consensus 304 l~~L~~L~L~~N~l~g~----~p~~~----~~~L~~L~Ls~N~l~g----~~p~~~-~--~~~-~l~l~~N~~~~~ 363 (866)
+++|++|+|++|.+++. ++... .++|+.|+|++|++++ .+|..+ . ..+ .|++++|.+++.
T Consensus 243 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~ 318 (386)
T 2ca6_A 243 WPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEE 318 (386)
T ss_dssp CTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTT
T ss_pred CCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcc
Confidence 99999999999999865 34432 6889999999999998 577766 2 333 499999999865
|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=3.6e-22 Score=216.13 Aligned_cols=228 Identities=17% Similarity=0.161 Sum_probs=132.6
Q ss_pred CCCEEEccCCCCCCCCCc---cccCCCCcCEEeccCCcCCCCCCccc--cCCCCCCEeeccCCCCCCCCc----hhhcCC
Q 038019 90 YLTVLKIDQNFFTGPLPS---FIGNLSRLMFLSFSHNDFSGPVPREL--GNLKELTVLAFGTNNFSGALP----PELGNL 160 (866)
Q Consensus 90 ~L~~L~Ls~n~l~~~~p~---~l~~l~~L~~L~Ls~N~l~~~~p~~l--~~l~~L~~L~Ls~N~l~~~~p----~~l~~l 160 (866)
.++.|.+.++.++...-. .+..+++|++|+|++|.+++..|..+ ..+++|++|+|++|.+++..+ ..+..+
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~ 144 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK 144 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence 356666666555421000 01123456666666666666666665 666666666666666665443 233445
Q ss_pred CCccEEEeecCCCCCCChhhhhcCcCCCEEEecCCCCCCC--C--cccccCCCCCCeEEccCCCCCCCCchhhcCCCCCC
Q 038019 161 AKLEQLYIDSCGAGGEIPSTFAKLRNMQTLWASDNPFTGK--I--PDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLE 236 (866)
Q Consensus 161 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~--~--p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~ 236 (866)
++|++|+|++|++++..+..|..+++|++|+|++|++.+. + +..+..+++|++|+|++|+++. ++..
T Consensus 145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~-------- 215 (310)
T 4glp_A 145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGV-------- 215 (310)
T ss_dssp SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHH--------
T ss_pred cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHH--------
Confidence 5566666666655555555555555555555555554431 1 1122345555555555555431 1110
Q ss_pred EEEccCccCCCCCchhhhcCCCCCceeccCcccccCCCcccCCC---CCcCEEeeecCcCcccCCcccCCCCCCcEEECc
Q 038019 237 SLQMSDIYNVSSSLDFVMSLKNLTDLSLRNALITGTIPFGIGEL---QMLQILDLSFNNLTGQIPATLFNIDSLEYLFLG 313 (866)
Q Consensus 237 ~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l---~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~ 313 (866)
....+..+++|++|+|++|.+++..|..+..+ ++|+.|+|++|+++ .+|..+. ++|++|+|+
T Consensus 216 ------------~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls 280 (310)
T 4glp_A 216 ------------CAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLS 280 (310)
T ss_dssp ------------HHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECC
T ss_pred ------------HHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECC
Confidence 00123556777777777777777766666655 57888888888887 5566554 678888888
Q ss_pred CCCCcccCCcccCCCCCEEEeeCCCCCC
Q 038019 314 NNSLSGTLPDQKSENLQKIDLSHNHLSG 341 (866)
Q Consensus 314 ~N~l~g~~p~~~~~~L~~L~Ls~N~l~g 341 (866)
+|++++.......++|+.|+|++|+++.
T Consensus 281 ~N~l~~~~~~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 281 SNRLNRAPQPDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp SCCCCSCCCTTSCCCCSCEECSSTTTSC
T ss_pred CCcCCCCchhhhCCCccEEECcCCCCCC
Confidence 8888863222345778888888888764
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=99.86 E-value=1.7e-23 Score=229.30 Aligned_cols=233 Identities=16% Similarity=0.206 Sum_probs=183.5
Q ss_pred eeEEEEEEcccCcCCCCCcccCCCCCCCEEEccCCCCCCC-CCccccCCCCcCEEeccCCcCCCCCCccccCCCCCCEee
Q 038019 65 CHITKLRVYGLNKKGVIPEELVTLQYLTVLKIDQNFFTGP-LPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKELTVLA 143 (866)
Q Consensus 65 ~~v~~L~l~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 143 (866)
.+++.|++.+|.+.+..+. +..+++|++|+|++|.+++. ++..+.++++|++|+|++|.+++..+..++.+++|++|+
T Consensus 70 ~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~ 148 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN 148 (336)
T ss_dssp TTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEE
T ss_pred ccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEE
Confidence 4789999999999988776 66899999999999999866 788899999999999999999988889999999999999
Q ss_pred ccCC-CCCCC-CchhhcCCCCccEEEeecC-CCCCC-ChhhhhcCc-CCCEEEecCC--CCC-CCCcccccCCCCCCeEE
Q 038019 144 FGTN-NFSGA-LPPELGNLAKLEQLYIDSC-GAGGE-IPSTFAKLR-NMQTLWASDN--PFT-GKIPDFIGNWTKLKSLR 215 (866)
Q Consensus 144 Ls~N-~l~~~-~p~~l~~l~~L~~L~L~~n-~l~~~-~p~~~~~l~-~L~~L~L~~N--~l~-~~~p~~l~~l~~L~~L~ 215 (866)
|++| .+++. ++..+.++++|++|+|++| .+++. ++..+..++ +|++|++++| .++ +.++..+.++++|++|+
T Consensus 149 L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~ 228 (336)
T 2ast_B 149 LSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLD 228 (336)
T ss_dssp CTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEE
T ss_pred CCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEe
Confidence 9999 67753 6777899999999999999 88865 678899999 9999999999 565 45677888999999999
Q ss_pred ccCCC-CCCCCchhhcCCCCCCEEEccCcc-CCCCCchhhhcCCCCCceeccCcccccCCCcccCCC-CCcCEEeeecCc
Q 038019 216 FQGNS-FQGPIPSSLSKLASLESLQMSDIY-NVSSSLDFVMSLKNLTDLSLRNALITGTIPFGIGEL-QMLQILDLSFNN 292 (866)
Q Consensus 216 L~~N~-l~~~~p~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l-~~L~~L~Ls~N~ 292 (866)
|++|. +++..+..+.++++|+.|++++|. +.......+..+++|+.|++++| ++.. .+..+ .+|..|++++|+
T Consensus 229 l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~---~~~~l~~~l~~L~l~~n~ 304 (336)
T 2ast_B 229 LSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDG---TLQLLKEALPHLQINCSH 304 (336)
T ss_dssp CTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTT---CHHHHHHHSTTSEESCCC
T ss_pred CCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHH---HHHHHHhhCcceEEeccc
Confidence 99999 777777888889999999998875 22222334566677777777666 3221 11111 123444455555
Q ss_pred CcccCCcccC
Q 038019 293 LTGQIPATLF 302 (866)
Q Consensus 293 l~~~~p~~l~ 302 (866)
+++..|..++
T Consensus 305 l~~~~~~~~~ 314 (336)
T 2ast_B 305 FTTIARPTIG 314 (336)
T ss_dssp SCCTTCSSCS
T ss_pred CccccCCccc
Confidence 5555554443
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
Probab=99.86 E-value=8.8e-22 Score=204.59 Aligned_cols=203 Identities=20% Similarity=0.203 Sum_probs=141.4
Q ss_pred CCCcccCCCCCCCEEEccCCCCCCCCCccccCCCCcCEEeccCCc-CCCCCCccccCCCCCCEeeccC-CCCCCCCchhh
Q 038019 80 VIPEELVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHND-FSGPVPRELGNLKELTVLAFGT-NNFSGALPPEL 157 (866)
Q Consensus 80 ~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~~~p~~l~~l~~L~~L~Ls~-N~l~~~~p~~l 157 (866)
.+|. +. .+|++|+|++|++++..+..|.++++|++|+|++|+ ++...+..|.++++|++|+|++ |.++...+..|
T Consensus 25 ~ip~-~~--~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f 101 (239)
T 2xwt_C 25 RIPS-LP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDAL 101 (239)
T ss_dssp SCCC-CC--TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSE
T ss_pred ccCC-CC--CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHh
Confidence 4555 43 378899999998887777788888889999998886 7766666888888888888888 88887766778
Q ss_pred cCCCCccEEEeecCCCCCCChhhhhcCcCCC---EEEecCC-CCCCCCcccccCCCCCC-eEEccCCCCCCCCchhhcCC
Q 038019 158 GNLAKLEQLYIDSCGAGGEIPSTFAKLRNMQ---TLWASDN-PFTGKIPDFIGNWTKLK-SLRFQGNSFQGPIPSSLSKL 232 (866)
Q Consensus 158 ~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~---~L~L~~N-~l~~~~p~~l~~l~~L~-~L~L~~N~l~~~~p~~~~~l 232 (866)
.++++|++|+|++|.+++ +|. |..+++|+ +|++++| .+++..+..|.++++|+ .|++++|.++...+..|..
T Consensus 102 ~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~- 178 (239)
T 2xwt_C 102 KELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG- 178 (239)
T ss_dssp ECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-
T ss_pred CCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-
Confidence 888888888888888876 554 77777777 8888888 77766666677777788 8888877776322222222
Q ss_pred CCCCEEEccCccCCCCCchhhhcCCCCCceeccCcc-cccCCCcccCCC-CCcCEEeeecCcCcccCCcccCCCCCCcEE
Q 038019 233 ASLESLQMSDIYNVSSSLDFVMSLKNLTDLSLRNAL-ITGTIPFGIGEL-QMLQILDLSFNNLTGQIPATLFNIDSLEYL 310 (866)
Q Consensus 233 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~p~~~~~l-~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 310 (866)
++| +.|+|++|. +++..+..|..+ ++|+.|++++|++++. |.. .+++|+.|
T Consensus 179 ~~L------------------------~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l-~~~--~~~~L~~L 231 (239)
T 2xwt_C 179 TKL------------------------DAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTAL-PSK--GLEHLKEL 231 (239)
T ss_dssp CEE------------------------EEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCC-CCT--TCTTCSEE
T ss_pred CCC------------------------CEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccC-Chh--HhccCcee
Confidence 444 444555552 444444455566 6666666666666633 322 45566666
Q ss_pred ECcCC
Q 038019 311 FLGNN 315 (866)
Q Consensus 311 ~L~~N 315 (866)
+++++
T Consensus 232 ~l~~~ 236 (239)
T 2xwt_C 232 IARNT 236 (239)
T ss_dssp ECTTC
T ss_pred eccCc
Confidence 66654
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
Probab=99.86 E-value=9.1e-22 Score=204.48 Aligned_cols=204 Identities=17% Similarity=0.169 Sum_probs=158.7
Q ss_pred CCCccccCCCCcCEEeccCCcCCCCCCccccCCCCCCEeeccCCC-CCCCCchhhcCCCCccEEEeec-CCCCCCChhhh
Q 038019 104 PLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKELTVLAFGTNN-FSGALPPELGNLAKLEQLYIDS-CGAGGEIPSTF 181 (866)
Q Consensus 104 ~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~~~p~~l~~l~~L~~L~L~~-n~l~~~~p~~~ 181 (866)
.+|. +. ++|++|+|++|++++..+..|.++++|++|+|++|. ++...+..|.++++|++|+|++ |.+++..+..|
T Consensus 25 ~ip~-~~--~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f 101 (239)
T 2xwt_C 25 RIPS-LP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDAL 101 (239)
T ss_dssp SCCC-CC--TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSE
T ss_pred ccCC-CC--CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHh
Confidence 4555 43 389999999999997777789999999999999997 8766667888999999999988 88887777788
Q ss_pred hcCcCCCEEEecCCCCCCCCcccccCCCCCC---eEEccCC-CCCCCCchhhcCCCCCCEEEccCccCCCCCchhhhcCC
Q 038019 182 AKLRNMQTLWASDNPFTGKIPDFIGNWTKLK---SLRFQGN-SFQGPIPSSLSKLASLESLQMSDIYNVSSSLDFVMSLK 257 (866)
Q Consensus 182 ~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~---~L~L~~N-~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~ 257 (866)
.++++|++|++++|.+++ +|. +..+++|+ +|++++| .+++..+..|.+++
T Consensus 102 ~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~------------------------ 155 (239)
T 2xwt_C 102 KELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLC------------------------ 155 (239)
T ss_dssp ECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTB------------------------
T ss_pred CCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchh------------------------
Confidence 888888888888888875 555 77777777 8888887 77655444555554
Q ss_pred CCC-ceeccCcccccCCCcccCCCCCcCEEeeecCc-CcccCCcccCCC-CCCcEEECcCCCCcccCCcccCCCCCEEEe
Q 038019 258 NLT-DLSLRNALITGTIPFGIGELQMLQILDLSFNN-LTGQIPATLFNI-DSLEYLFLGNNSLSGTLPDQKSENLQKIDL 334 (866)
Q Consensus 258 ~L~-~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~l~~l-~~L~~L~L~~N~l~g~~p~~~~~~L~~L~L 334 (866)
+|+ .|++++|.++...+..+.. ++|+.|++++|+ +++..+..+..+ ++|+.|+|++|++++ +|...+++|+.|++
T Consensus 156 ~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l~~~~~~~L~~L~l 233 (239)
T 2xwt_C 156 NETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPSKGLEHLKELIA 233 (239)
T ss_dssp SSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCC-CCCTTCTTCSEEEC
T ss_pred cceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcccc-CChhHhccCceeec
Confidence 445 5555556665222233444 799999999995 997778889999 999999999999985 55557789999999
Q ss_pred eCCC
Q 038019 335 SHNH 338 (866)
Q Consensus 335 s~N~ 338 (866)
+++.
T Consensus 234 ~~~~ 237 (239)
T 2xwt_C 234 RNTW 237 (239)
T ss_dssp TTC-
T ss_pred cCcc
Confidence 8763
|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=5.7e-22 Score=214.59 Aligned_cols=227 Identities=18% Similarity=0.186 Sum_probs=174.9
Q ss_pred eEEEEEEcccCcCCCC-C--cccCCCCCCCEEEccCCCCCCCCCccc--cCCCCcCEEeccCCcCCCCCC----ccccCC
Q 038019 66 HITKLRVYGLNKKGVI-P--EELVTLQYLTVLKIDQNFFTGPLPSFI--GNLSRLMFLSFSHNDFSGPVP----RELGNL 136 (866)
Q Consensus 66 ~v~~L~l~~~~l~~~~-p--~~l~~l~~L~~L~Ls~n~l~~~~p~~l--~~l~~L~~L~Ls~N~l~~~~p----~~l~~l 136 (866)
+++.|.+.++.++... . ..+..+++|++|+|++|.+++..|..+ .++++|++|+|++|.+++..+ ..+..+
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~ 144 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK 144 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence 4677888777665321 1 112345679999999999999999888 999999999999999997666 445689
Q ss_pred CCCCEeeccCCCCCCCCchhhcCCCCccEEEeecCCCCCC--C--hhhhhcCcCCCEEEecCCCCCCCCcc----cccCC
Q 038019 137 KELTVLAFGTNNFSGALPPELGNLAKLEQLYIDSCGAGGE--I--PSTFAKLRNMQTLWASDNPFTGKIPD----FIGNW 208 (866)
Q Consensus 137 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~--~--p~~~~~l~~L~~L~L~~N~l~~~~p~----~l~~l 208 (866)
++|++|+|++|.+++..+..++.+++|++|+|++|++.+. + +..+..+++|++|+|++|+++. ++. .+.++
T Consensus 145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~l 223 (310)
T 4glp_A 145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAAG 223 (310)
T ss_dssp SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHHT
T ss_pred cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhcC
Confidence 9999999999999999889999999999999999998753 2 2234789999999999999973 333 35788
Q ss_pred CCCCeEEccCCCCCCCCchhhcCCCCCCEEEccCccCCCCCchhhhcCCCCCceeccCcccccCCCcccCCCCCcCEEee
Q 038019 209 TKLKSLRFQGNSFQGPIPSSLSKLASLESLQMSDIYNVSSSLDFVMSLKNLTDLSLRNALITGTIPFGIGELQMLQILDL 288 (866)
Q Consensus 209 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 288 (866)
++|++|+|++|++++..|..+..+. .+++|++|+|++|.++ .+|..+. ++|+.|+|
T Consensus 224 ~~L~~L~Ls~N~l~~~~p~~~~~~~---------------------~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~L 279 (310)
T 4glp_A 224 VQPHSLDLSHNSLRATVNPSAPRCM---------------------WSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDL 279 (310)
T ss_dssp CCCSSEECTTSCCCCCCCSCCSSCC---------------------CCTTCCCEECCSSCCC-SCCSCCC--SCCSCEEC
T ss_pred CCCCEEECCCCCCCccchhhHHhcc---------------------CcCcCCEEECCCCCCC-chhhhhc--CCCCEEEC
Confidence 9999999999999988777666542 1245566666666666 4455443 67788888
Q ss_pred ecCcCcccCCcccCCCCCCcEEECcCCCCcc
Q 038019 289 SFNNLTGQIPATLFNIDSLEYLFLGNNSLSG 319 (866)
Q Consensus 289 s~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g 319 (866)
++|++++. |. +..+++|+.|+|++|+++.
T Consensus 280 s~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 280 SSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp CSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred CCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence 88888753 32 5667888888888888763
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
Probab=99.86 E-value=8e-21 Score=198.89 Aligned_cols=177 Identities=15% Similarity=0.231 Sum_probs=154.4
Q ss_pred EEEEEEcccCcCCCCCcccCCCCCCCEEEccCCCCCCCCCccccCCCCcCEEeccCCcCCCCCCccccCCCCCCEeeccC
Q 038019 67 ITKLRVYGLNKKGVIPEELVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKELTVLAFGT 146 (866)
Q Consensus 67 v~~L~l~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~ 146 (866)
.+.+++.+++++ .+|..+. ++|+.|+|++|.+++..+..|.++++|++|+|++|.|++..+..|.++++|++|+|++
T Consensus 16 ~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 92 (251)
T 3m19_A 16 KKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN 92 (251)
T ss_dssp GTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred CeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCC
Confidence 457888888887 4666555 5899999999999988888899999999999999999988888899999999999999
Q ss_pred CCCCCCCchhhcCCCCccEEEeecCCCCCCChhhhhcCcCCCEEEecCCCCCCCCcccccCCCCCCeEEccCCCCCCCCc
Q 038019 147 NNFSGALPPELGNLAKLEQLYIDSCGAGGEIPSTFAKLRNMQTLWASDNPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIP 226 (866)
Q Consensus 147 N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p 226 (866)
|++++..+..|..+++|++|+|++|++++..+..|..+++|++|+|++|++++..+..|..+++|++|+|++|++++..+
T Consensus 93 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 172 (251)
T 3m19_A 93 NQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPH 172 (251)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred CcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCH
Confidence 99998888888999999999999999998888888899999999999999997777788889999999999999997777
Q ss_pred hhhcCCCCCCEEEccCccCC
Q 038019 227 SSLSKLASLESLQMSDIYNV 246 (866)
Q Consensus 227 ~~~~~l~~L~~L~l~~n~~~ 246 (866)
..|..+++|+.|++++|.+.
T Consensus 173 ~~~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 173 GAFDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp TTTTTCTTCCEEECCSCCBC
T ss_pred HHHhCCCCCCEEEeeCCcee
Confidence 78888888888888777664
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.86 E-value=6.7e-23 Score=226.98 Aligned_cols=254 Identities=16% Similarity=0.175 Sum_probs=196.1
Q ss_pred EEEccCCCCCCCCCccccCCCCcCEEeccCCcCCCCCC----ccccCCC-CCCEeeccCCCCCCCCchhhcCC-----CC
Q 038019 93 VLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVP----RELGNLK-ELTVLAFGTNNFSGALPPELGNL-----AK 162 (866)
Q Consensus 93 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p----~~l~~l~-~L~~L~Ls~N~l~~~~p~~l~~l-----~~ 162 (866)
.++|+.|.+++.+|..+...++|++|+|++|.+++..+ ..|..++ +|++|+|++|.+++..+..+..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 46899999999888888877889999999999987776 7788888 89999999999998888888775 99
Q ss_pred ccEEEeecCCCCCCChhhhhc----C-cCCCEEEecCCCCCCCCccccc----C-CCCCCeEEccCCCCCCCCc----hh
Q 038019 163 LEQLYIDSCGAGGEIPSTFAK----L-RNMQTLWASDNPFTGKIPDFIG----N-WTKLKSLRFQGNSFQGPIP----SS 228 (866)
Q Consensus 163 L~~L~L~~n~l~~~~p~~~~~----l-~~L~~L~L~~N~l~~~~p~~l~----~-l~~L~~L~L~~N~l~~~~p----~~ 228 (866)
|++|+|++|.+++..+..+.. + ++|++|+|++|++++..+..+. . .++|++|+|++|.++.... ..
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 999999999999888775554 3 8999999999999877665543 3 3689999999999986443 44
Q ss_pred hcCCC-CCCEEEccCccCCCCCchh----hhcC-CCCCceeccCcccccC----CCcccCC-CCCcCEEeeecCcCcccC
Q 038019 229 LSKLA-SLESLQMSDIYNVSSSLDF----VMSL-KNLTDLSLRNALITGT----IPFGIGE-LQMLQILDLSFNNLTGQI 297 (866)
Q Consensus 229 ~~~l~-~L~~L~l~~n~~~~~~~~~----~~~l-~~L~~L~L~~n~l~~~----~p~~~~~-l~~L~~L~Ls~N~l~~~~ 297 (866)
+..++ +|+.|+|++|.+....... +..+ ++|+.|+|++|.+++. ++..+.. .++|+.|+|++|.+++..
T Consensus 162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~ 241 (362)
T 3goz_A 162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPS 241 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCC
T ss_pred HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHH
Confidence 45665 8999999999887666543 3445 5899999999998863 3444444 358999999999988654
Q ss_pred C----cccCCCCCCcEEECcCCCCcccCCc---------ccCCCCCEEEeeCCCCCCccCcc
Q 038019 298 P----ATLFNIDSLEYLFLGNNSLSGTLPD---------QKSENLQKIDLSHNHLSGTFPLW 346 (866)
Q Consensus 298 p----~~l~~l~~L~~L~L~~N~l~g~~p~---------~~~~~L~~L~Ls~N~l~g~~p~~ 346 (866)
+ ..+..+++|+.|+|++|.+.+..+. ...++|+.||+++|++.+..+..
T Consensus 242 ~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~~~ 303 (362)
T 3goz_A 242 LENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIP 303 (362)
T ss_dssp HHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGCHH
T ss_pred HHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcchHH
Confidence 4 3456678899999999985432221 12356888888888887665543
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
Probab=99.85 E-value=6.2e-21 Score=206.08 Aligned_cols=195 Identities=24% Similarity=0.317 Sum_probs=117.9
Q ss_pred cCCCCCCCEEEccCCCCCCCCCccccCCCCcCEEeccCCcCCCCCCccccCCCCCCEeeccCCCCCCCCchhhcCCCCcc
Q 038019 85 LVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKELTVLAFGTNNFSGALPPELGNLAKLE 164 (866)
Q Consensus 85 l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~ 164 (866)
+.++++|++|++++|.++. ++ .+..+++|++|+|++|.+++..+ +..+++|++|+|++|.+++. +.+..+++|+
T Consensus 37 ~~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~ 110 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIK 110 (308)
T ss_dssp HHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCC
T ss_pred HHHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCC
Confidence 3456667777777777663 34 46667777777777777764333 66777777777777776643 3566666677
Q ss_pred EEEeecCCCCCCChhhhhcCcCCCEEEecCCCCCCCCcccccCCCCCCeEEccCCCCCCCCchhhcCCCCCCEEEccCcc
Q 038019 165 QLYIDSCGAGGEIPSTFAKLRNMQTLWASDNPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLESLQMSDIY 244 (866)
Q Consensus 165 ~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~n~ 244 (866)
+|+|++|++++. + .+..+++|++|++++|.+++..+ +..+++|+.|+|++|.+++..+ +..+++|+.|+++
T Consensus 111 ~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~--- 181 (308)
T 1h6u_A 111 TLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKAD--- 181 (308)
T ss_dssp EEECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECC---
T ss_pred EEECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECC---
Confidence 777766666653 2 26666666666666666664332 5566666666666666654222 4455545444444
Q ss_pred CCCCCchhhhcCCCCCceeccCcccccCCCcccCCCCCcCEEeeecCcCcccCCcccCCCCCCcEEECcCCCCcc
Q 038019 245 NVSSSLDFVMSLKNLTDLSLRNALITGTIPFGIGELQMLQILDLSFNNLTGQIPATLFNIDSLEYLFLGNNSLSG 319 (866)
Q Consensus 245 ~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g 319 (866)
+|.+++..+ +..+++|+.|+|++|++++..+ +..+++|+.|+|++|++++
T Consensus 182 ---------------------~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 182 ---------------------DNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp ---------------------SSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEEC
T ss_pred ---------------------CCccCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeec
Confidence 444443222 4555666666666666664432 5666777777777777654
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
Probab=99.85 E-value=1.7e-20 Score=196.42 Aligned_cols=180 Identities=19% Similarity=0.202 Sum_probs=140.2
Q ss_pred CCCEEEccCCCCCCCCCccccCCCCcCEEeccCCcCCCCCCccccCCCCCCEeeccCCCCCCCCchhhcCCCCccEEEee
Q 038019 90 YLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKELTVLAFGTNNFSGALPPELGNLAKLEQLYID 169 (866)
Q Consensus 90 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~ 169 (866)
..++++++++.++ .+|..+. ++|++|+|++|++++..+..|.++++|++|+|++|.+++..+..|..+++|++|+|+
T Consensus 15 ~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 15 GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 4578999999987 5666554 689999999999998888889999999999999999988888888888899999998
Q ss_pred cCCCCCCChhhhhcCcCCCEEEecCCCCCCCCcccccCCCCCCeEEccCCCCCCCCchhhcCCCCCCEEEccCccCCCCC
Q 038019 170 SCGAGGEIPSTFAKLRNMQTLWASDNPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLESLQMSDIYNVSSS 249 (866)
Q Consensus 170 ~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~ 249 (866)
+|++++..+..|..+++|++|+|++|++++..+..|..+++|++|+|++|++++..+..|..+++|+.|+
T Consensus 92 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~---------- 161 (251)
T 3m19_A 92 NNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLS---------- 161 (251)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE----------
T ss_pred CCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEE----------
Confidence 8888887778888888888888888888876666677888888888888888766555666655555555
Q ss_pred chhhhcCCCCCceeccCcccccCCCcccCCCCCcCEEeeecCcCccc
Q 038019 250 LDFVMSLKNLTDLSLRNALITGTIPFGIGELQMLQILDLSFNNLTGQ 296 (866)
Q Consensus 250 ~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 296 (866)
|++|.+++..+..+..+++|+.|+|++|.+.+.
T Consensus 162 --------------L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 162 --------------LSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp --------------CCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred --------------CCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 455555555555666677777777777777644
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
Probab=99.85 E-value=7.4e-21 Score=205.44 Aligned_cols=208 Identities=23% Similarity=0.302 Sum_probs=149.4
Q ss_pred EEccCCCCCCCCCccccCCCCcCEEeccCCcCCCCCCccccCCCCCCEeeccCCCCCCCCchhhcCCCCccEEEeecCCC
Q 038019 94 LKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKELTVLAFGTNNFSGALPPELGNLAKLEQLYIDSCGA 173 (866)
Q Consensus 94 L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l 173 (866)
+.+..+.+++.+ .+..+++|++|++++|.++. +| .+..+++|++|+|++|.+++..+ +..+++|++|+|++|.+
T Consensus 24 ~~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l 97 (308)
T 1h6u_A 24 IAAGKSNVTDTV--TQADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPL 97 (308)
T ss_dssp HHTTCSSTTSEE--CHHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCC
T ss_pred HHhCCCCcCcee--cHHHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcC
Confidence 345555555432 24567788888888887764 44 57777888888888887775433 77777777777777777
Q ss_pred CCCChhhhhcCcCCCEEEecCCCCCCCCcccccCCCCCCeEEccCCCCCCCCchhhcCCCCCCEEEccCccCCCCCchhh
Q 038019 174 GGEIPSTFAKLRNMQTLWASDNPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLESLQMSDIYNVSSSLDFV 253 (866)
Q Consensus 174 ~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~ 253 (866)
++. ..+..+++|++|+|++|++++. +. +..+++|++|+|++|.+++..+ +
T Consensus 98 ~~~--~~~~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~~~--------------------------l 147 (308)
T 1h6u_A 98 KNV--SAIAGLQSIKTLDLTSTQITDV-TP-LAGLSNLQVLYLDLNQITNISP--------------------------L 147 (308)
T ss_dssp SCC--GGGTTCTTCCEEECTTSCCCCC-GG-GTTCTTCCEEECCSSCCCCCGG--------------------------G
T ss_pred CCc--hhhcCCCCCCEEECCCCCCCCc-hh-hcCCCCCCEEECCCCccCcCcc--------------------------c
Confidence 653 2466777777777777777643 22 6666666666666666654322 3
Q ss_pred hcCCCCCceeccCcccccCCCcccCCCCCcCEEeeecCcCcccCCcccCCCCCCcEEECcCCCCcccCCcccCCCCCEEE
Q 038019 254 MSLKNLTDLSLRNALITGTIPFGIGELQMLQILDLSFNNLTGQIPATLFNIDSLEYLFLGNNSLSGTLPDQKSENLQKID 333 (866)
Q Consensus 254 ~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~~p~~~~~~L~~L~ 333 (866)
..+++|+.|+|++|.+++..+ +..+++|+.|++++|.+++..+ +..+++|++|+|++|++++..+....++|+.|+
T Consensus 148 ~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~ 223 (308)
T 1h6u_A 148 AGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSPLANTSNLFIVT 223 (308)
T ss_dssp GGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGGGTTCTTCCEEE
T ss_pred cCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCccccccCCCCCCEEE
Confidence 445566666677777765433 7889999999999999986544 888999999999999999877655678999999
Q ss_pred eeCCCCCC
Q 038019 334 LSHNHLSG 341 (866)
Q Consensus 334 Ls~N~l~g 341 (866)
|++|++++
T Consensus 224 l~~N~i~~ 231 (308)
T 1h6u_A 224 LTNQTITN 231 (308)
T ss_dssp EEEEEEEC
T ss_pred ccCCeeec
Confidence 99999986
|
| >3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.5e-21 Score=208.50 Aligned_cols=142 Identities=15% Similarity=0.207 Sum_probs=97.6
Q ss_pred hhccCCCCCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeee---cCCCCchhHHHHHHHHHHHHHh
Q 038019 635 VLVGIGSKPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAM---RGHLTEKADVFSFGVVALEIIS 711 (866)
Q Consensus 635 ~~~~~~~~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~---~~~~t~ksDVySfGvvLlEl~t 711 (866)
++|+.....|++.+++...|+.|||+++.+............+||++|||||++. .+.++.|+||||||||||||+|
T Consensus 153 IiHRDlKp~NILl~~~~~~Ki~DFGla~~~~~~~~~~~~~~~~GT~~ymAPE~l~~~~~~~y~~ksDVwS~Gvvl~Ellt 232 (307)
T 3omv_A 153 IIHRDMKSNNIFLHEGLTVKIGDFGLATVKSRWSGSQQVEQPTGSVLWMAPEVIRMQDNNPFSFQSDVYSYGIVLYELMT 232 (307)
T ss_dssp CBCSCCCSSSEEEETTEEEEECCCSSCBC------------CCCCTTSCCHHHHHCCSSCCCCHHHHHHHHHHHHHHHHH
T ss_pred ccCCccCHHHEEECCCCcEEEeeccCceecccCCcceeecccccCCCccCHHHhhccCCCCCCcHHHhHhHHHHHHHHHH
Confidence 4455555568999899999999999999887655444556678999999999986 3569999999999999999999
Q ss_pred cCCCCCCCchhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhc
Q 038019 712 GRASSDKSLDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLAG 786 (866)
Q Consensus 712 g~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~~ 786 (866)
|+.||....... .+......+ ..+|.+...+......+.+++..||+.+|++||||.||+++|+.
T Consensus 233 g~~Pf~~~~~~~------~~~~~~~~~----~~~p~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~ei~~~Le~ 297 (307)
T 3omv_A 233 GELPYSHINNRD------QIIFMVGRG----YASPDLSKLYKNCPKAMKRLVADCVKKVKEERPLFPQILSSIEL 297 (307)
T ss_dssp SSCTTTTCCCHH------HHHHHHHTT----CCCCCSTTSCTTSCHHHHHHHHHHTCSSSTTSCCHHHHHHHHHH
T ss_pred CCCCCCCCChHH------HHHHHHhcC----CCCCCcccccccchHHHHHHHHHHcCCCHhHCcCHHHHHHHHHH
Confidence 999997543322 111122221 23343333333334456677789999999999999999999874
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.83 E-value=8.9e-20 Score=185.08 Aligned_cols=181 Identities=17% Similarity=0.226 Sum_probs=121.4
Q ss_pred EEEEEcccCcCCCCCcccCCCCCCCEEEccCCCCCCCCCccccCCCCcCEEeccCCcCCCCCCccccCCCCCCEeeccCC
Q 038019 68 TKLRVYGLNKKGVIPEELVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKELTVLAFGTN 147 (866)
Q Consensus 68 ~~L~l~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N 147 (866)
+.+++.++.++. +|..+ .++|++|+|++|.+++..+..|.++++|++|+|++|++++..+..|..+++|++|+|++|
T Consensus 10 ~~v~c~~~~l~~-~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 10 TTVECYSQGRTS-VPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp TEEECCSSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCccC-CCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence 456666666653 34333 357788888888887666666777888888888888877665566777777777777777
Q ss_pred CCCCCCchhhcCCCCccEEEeecCCCCCCChhhhhcCcCCCEEEecCCCCCCCCcccccCCCCCCeEEccCCCCCCCCch
Q 038019 148 NFSGALPPELGNLAKLEQLYIDSCGAGGEIPSTFAKLRNMQTLWASDNPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPS 227 (866)
Q Consensus 148 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~ 227 (866)
++++..+..+..+++|++|+|++|++++..+..|..+++|++|+|++|++++..+..+..+++|++|+|++|.+.+
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~---- 162 (208)
T 2o6s_A 87 QLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC---- 162 (208)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC----
T ss_pred cCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec----
Confidence 7776555556677777777777776666555556666666666666666665444445555566666666554432
Q ss_pred hhcCCCCCCEEEccCccCCCCCchhhhcCCCCCceeccCcccccCCCcccCCCCC
Q 038019 228 SLSKLASLESLQMSDIYNVSSSLDFVMSLKNLTDLSLRNALITGTIPFGIGELQM 282 (866)
Q Consensus 228 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~ 282 (866)
.+++|+.|+++.|.++|.+|..++.++.
T Consensus 163 ---------------------------~~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 163 ---------------------------TCPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp ---------------------------CTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred ---------------------------CCCCHHHHHHHHHhCCceeeccCccccC
Confidence 2456777888888888888877776654
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
Probab=99.82 E-value=5.1e-20 Score=202.73 Aligned_cols=198 Identities=17% Similarity=0.060 Sum_probs=140.4
Q ss_pred EEEEcccCcCCCCCcccCCCCCCCEEEccCCCCCCCCCccccCCCCcCEEeccCCcCCCCCC-ccccCCCCCCE-eeccC
Q 038019 69 KLRVYGLNKKGVIPEELVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVP-RELGNLKELTV-LAFGT 146 (866)
Q Consensus 69 ~L~l~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~-L~Ls~ 146 (866)
.++.++++++ .+|..+ .++|++|+|++|+|+...+..|.++++|++|+|++|++.+.+| ..|.++++|++ +.++.
T Consensus 13 ~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~ 89 (350)
T 4ay9_X 13 VFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89 (350)
T ss_dssp EEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred EEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence 4566677777 567666 3689999999999986666789999999999999999877665 56889988775 66677
Q ss_pred CCCCCCCchhhcCCCCccEEEeecCCCCCCChhhhhcCcCCCEEEecC-CCCCCCCcccccCCC-CCCeEEccCCCCCCC
Q 038019 147 NNFSGALPPELGNLAKLEQLYIDSCGAGGEIPSTFAKLRNMQTLWASD-NPFTGKIPDFIGNWT-KLKSLRFQGNSFQGP 224 (866)
Q Consensus 147 N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~-N~l~~~~p~~l~~l~-~L~~L~L~~N~l~~~ 224 (866)
|+++...|..|..+++|++|++++|++....+..+....++..|++.+ +++....+..|..+. .++.|+|++|+++..
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i 169 (350)
T 4ay9_X 90 NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEI 169 (350)
T ss_dssp TTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEE
T ss_pred CcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCC
Confidence 899888888899999999999999999888777777788888888866 456644455566554 578888888888743
Q ss_pred CchhhcCCCCCCEEEccC-ccCCCCCchhhhcCCCCCceeccCcccc
Q 038019 225 IPSSLSKLASLESLQMSD-IYNVSSSLDFVMSLKNLTDLSLRNALIT 270 (866)
Q Consensus 225 ~p~~~~~l~~L~~L~l~~-n~~~~~~~~~~~~l~~L~~L~L~~n~l~ 270 (866)
+.......+|+.|++.+ |.+.......|..+++|+.|+|++|.++
T Consensus 170 -~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~ 215 (350)
T 4ay9_X 170 -HNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH 215 (350)
T ss_dssp -CTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC
T ss_pred -ChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcC
Confidence 33333445566666543 3333333333444444444444444443
|
| >4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A | Back alignment and structure |
|---|
Probab=99.82 E-value=1.5e-21 Score=209.32 Aligned_cols=138 Identities=22% Similarity=0.289 Sum_probs=103.5
Q ss_pred hhccCCCCCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHh-cC
Q 038019 635 VLVGIGSKPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIIS-GR 713 (866)
Q Consensus 635 ~~~~~~~~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~t-g~ 713 (866)
++++.....|++.+++...|+.|||+++.+..+..........||++|||||++.++.++.|+||||||||||||+| |+
T Consensus 166 iiHRDLK~~NILl~~~~~~Ki~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~~~~~s~ksDVwSfGvvl~El~t~g~ 245 (308)
T 4gt4_A 166 VVHKDLATRNVLVYDKLNVKISDLGLFREVYAADYYKLLGNSLLPIRWMAPEAIMYGKFSIDSDIWSYGVVLWEVFSYGL 245 (308)
T ss_dssp CCCSCCSGGGEEECGGGCEEECCSCCBCGGGGGGCBCSSSSSCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTC
T ss_pred CCCCCccccceEECCCCCEEECCcccceeccCCCceeEecccccCCcccCHHHHhCCCCCccchhhhHHHHHHHHHhCCC
Confidence 34444445589999999999999999998866544333344579999999999999999999999999999999999 89
Q ss_pred CCCCCCchhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhcC
Q 038019 714 ASSDKSLDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLAGD 787 (866)
Q Consensus 714 ~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~~~ 787 (866)
.||...... .+.+.+ ..+... | .+.++...+.+++..||+.||++||||.||++.|+..
T Consensus 246 ~Pf~~~~~~---~~~~~i----~~~~~~----~----~p~~~~~~~~~li~~C~~~dP~~RPs~~ei~~~L~a~ 304 (308)
T 4gt4_A 246 QPYCGYSNQ---DVVEMI----RNRQVL----P----CPDDCPAWVYALMIECWNEFPSRRPRFKDIHSRLRAW 304 (308)
T ss_dssp CTTTTCCHH---HHHHHH----HTTCCC----C----CCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTS
T ss_pred CCCCCCCHH---HHHHHH----HcCCCC----C----CcccchHHHHHHHHHHcCCChhHCcCHHHHHHHHHhc
Confidence 999765432 233322 222211 1 1122334566788899999999999999999999853
|
| >4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.81 E-value=3e-21 Score=209.06 Aligned_cols=141 Identities=21% Similarity=0.207 Sum_probs=94.8
Q ss_pred hhccCCCCCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHh-cC
Q 038019 635 VLVGIGSKPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIIS-GR 713 (866)
Q Consensus 635 ~~~~~~~~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~t-g~ 713 (866)
++|+.....|++.+++...|+.|||+++.+.......+.....||++|||||++.+..++.|+||||||||||||+| |+
T Consensus 179 iiHRDLKp~NILl~~~~~~Ki~DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~~~~~~~~~sDvwS~Gvvl~Ellt~G~ 258 (329)
T 4aoj_A 179 FVHRDLATRNCLVGQGLVVKIGDFGMSRDIYSTDYYRVGGRTMLPIRWMPPESILYRKFTTESDVWSFGVVLWEIFTYGK 258 (329)
T ss_dssp CCCSCCCGGGEEEETTTEEEECCCC----------------CCCCGGGCCHHHHTTCCCCHHHHHHHHHHHHHHHHTTSC
T ss_pred eecccccHhhEEECCCCcEEEcccccceeccCCCcceecCcccccccccChhhhcCCCCCccccccchHHHHHHHHcCCC
Confidence 34444445588998999999999999998877665555556789999999999999999999999999999999999 89
Q ss_pred CCCCCCchhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhcCcCC
Q 038019 714 ASSDKSLDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLAGDIEV 790 (866)
Q Consensus 714 ~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~~~~~~ 790 (866)
.||......+ +...+ ..+.. +..+. .....+.+++.+||+.||++||||.||+++|+...+.
T Consensus 259 ~Pf~~~~~~~---~~~~i----~~g~~-----~~~p~---~~~~~~~~li~~cl~~dP~~RPs~~ei~~~L~~l~~~ 320 (329)
T 4aoj_A 259 QPWYQLSNTE---AIDCI----TQGRE-----LERPR---ACPPEVYAIMRGCWQREPQQRHSIKDVHARLQALAQA 320 (329)
T ss_dssp CTTCSSCHHH---HHHHH----HHTCC-----CCCCT---TCCHHHHHHHHHHCCSSTTTSCCHHHHHHHHHHHHHS
T ss_pred CCCCCCCHHH---HHHHH----HcCCC-----CCCcc---cccHHHHHHHHHHcCcChhHCcCHHHHHHHHHHHhhC
Confidence 9997654322 22222 22211 11111 1223456677899999999999999999999976543
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
Probab=99.80 E-value=9.8e-20 Score=200.48 Aligned_cols=238 Identities=16% Similarity=0.075 Sum_probs=156.4
Q ss_pred CEEEccCCCCCCCCCccccCCCCcCEEeccCCcCCCCCCccccCCCCCCEeeccCCCCCCCCc-hhhcCCCCccE-EEee
Q 038019 92 TVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKELTVLAFGTNNFSGALP-PELGNLAKLEQ-LYID 169 (866)
Q Consensus 92 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~-L~L~ 169 (866)
++++.++++++ .+|..+ .++|++|+|++|+|+...+.+|.++++|++|+|++|++.+.+| ..|.++++|++ +.+.
T Consensus 12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 56888999998 677765 3689999999999996666789999999999999999876665 46788888775 5667
Q ss_pred cCCCCCCChhhhhcCcCCCEEEecCCCCCCCCcccccCCCCCCeEEccC-CCCCCCCchhhcCCC-CCCEEEccCccCCC
Q 038019 170 SCGAGGEIPSTFAKLRNMQTLWASDNPFTGKIPDFIGNWTKLKSLRFQG-NSFQGPIPSSLSKLA-SLESLQMSDIYNVS 247 (866)
Q Consensus 170 ~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~-N~l~~~~p~~~~~l~-~L~~L~l~~n~~~~ 247 (866)
.|+++...|..|..+++|++|++++|+++...+..+....++..|++.+ +.+....+..|..+. .|+.|++++|.+..
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~ 168 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE 168 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE
T ss_pred CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC
Confidence 7888888888899999999999999998876666666667778888865 456544455565553 46667777666654
Q ss_pred CCchhhhcCCCCCceeccC-cccccCCCcccCCCCCcCEEeeecCcCcccCCcccCCCCCCcEEECcCCCCcccCCc-cc
Q 038019 248 SSLDFVMSLKNLTDLSLRN-ALITGTIPFGIGELQMLQILDLSFNNLTGQIPATLFNIDSLEYLFLGNNSLSGTLPD-QK 325 (866)
Q Consensus 248 ~~~~~~~~l~~L~~L~L~~-n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~~p~-~~ 325 (866)
.....+ ...+|+.|++.+ |.++...+..|..+++|+.|+|++|+|+...+..+ .+|+.|.+.++.--..+|. ..
T Consensus 169 i~~~~f-~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~---~~L~~L~~l~~~~l~~lP~l~~ 244 (350)
T 4ay9_X 169 IHNSAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGL---ENLKKLRARSTYNLKKLPTLEK 244 (350)
T ss_dssp ECTTSS-TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSC---TTCCEEECTTCTTCCCCCCTTT
T ss_pred CChhhc-cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhh---ccchHhhhccCCCcCcCCCchh
Confidence 433333 234566666653 33433333345666666666666666653333222 3344444333322223332 22
Q ss_pred CCCCCEEEeeC
Q 038019 326 SENLQKIDLSH 336 (866)
Q Consensus 326 ~~~L~~L~Ls~ 336 (866)
+++|+.+++++
T Consensus 245 l~~L~~l~l~~ 255 (350)
T 4ay9_X 245 LVALMEASLTY 255 (350)
T ss_dssp CCSCCEEECSC
T ss_pred CcChhhCcCCC
Confidence 34555555544
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.80 E-value=8.7e-20 Score=211.67 Aligned_cols=203 Identities=25% Similarity=0.317 Sum_probs=157.4
Q ss_pred CCe-eccccCCCCCeeeEEEEEEcccCcCCCCCcccCCCCCCCEEEccCCCCCCCCCccccCCCCcCEEeccCCcCCCCC
Q 038019 51 PAI-VCNCTFDNGATCHITKLRVYGLNKKGVIPEELVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPV 129 (866)
Q Consensus 51 ~~v-~C~~~~~~~~~~~v~~L~l~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~ 129 (866)
.++ .|.|. +++.|++++|++++ +|..+. ++|++|+|++|+|+ .+| ..+++|++|+|++|+|++ +
T Consensus 51 ~~l~~C~~~-------~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-i 115 (571)
T 3cvr_A 51 SLLKECLIN-------QFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-L 115 (571)
T ss_dssp HHHHHHHHT-------TCSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-C
T ss_pred hhccccccC-------CccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-c
Confidence 466 67642 68899999999987 777663 78999999999998 567 557899999999999987 7
Q ss_pred CccccCCCCCCEeeccCCCCCCCCchhhcCCCCccEEEeecCCCCCCChhhhhcCcCCCEEEecCCCCCCCCcccccCCC
Q 038019 130 PRELGNLKELTVLAFGTNNFSGALPPELGNLAKLEQLYIDSCGAGGEIPSTFAKLRNMQTLWASDNPFTGKIPDFIGNWT 209 (866)
Q Consensus 130 p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 209 (866)
|. |.+ +|++|+|++|++++ +|. .+++|+.|+|++|.+++ +|. .+++|++|+|++|++++ +|. |. +
T Consensus 116 p~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~ 180 (571)
T 3cvr_A 116 PE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--E 180 (571)
T ss_dssp CC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--T
T ss_pred ch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--C
Confidence 77 665 89999999999987 555 68899999999999887 554 57889999999998886 666 65 7
Q ss_pred CCCeEEccCCCCCCCCchhhcCCCCCCEEEccCccCCCCCchhhhcCCCCCceeccCcccccCCCcccCCCCCcCEEeee
Q 038019 210 KLKSLRFQGNSFQGPIPSSLSKLASLESLQMSDIYNVSSSLDFVMSLKNLTDLSLRNALITGTIPFGIGELQMLQILDLS 289 (866)
Q Consensus 210 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls 289 (866)
+|+.|+|++|.|+ .+|. |.. +| +...+.|+.|+|++|.++ .+|..+..+++|+.|+|+
T Consensus 181 ~L~~L~Ls~N~L~-~lp~-~~~--~L-----------------~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~ 238 (571)
T 3cvr_A 181 SLEALDVSTNLLE-SLPA-VPV--RN-----------------HHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILE 238 (571)
T ss_dssp TCCEEECCSSCCS-SCCC-CC---------------------------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECC
T ss_pred CCCEEECcCCCCC-chhh-HHH--hh-----------------hcccccceEEecCCCcce-ecCHHHhcCCCCCEEEee
Confidence 8889999988888 4554 432 22 112244578888888887 467777779999999999
Q ss_pred cCcCcccCCcccCCCC
Q 038019 290 FNNLTGQIPATLFNID 305 (866)
Q Consensus 290 ~N~l~~~~p~~l~~l~ 305 (866)
+|.+++.+|..+..+.
T Consensus 239 ~N~l~~~~p~~l~~l~ 254 (571)
T 3cvr_A 239 DNPLSSRIRESLSQQT 254 (571)
T ss_dssp SSSCCHHHHHHHHHHH
T ss_pred CCcCCCcCHHHHHHhh
Confidence 9999988888776543
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.9e-19 Score=182.62 Aligned_cols=177 Identities=20% Similarity=0.258 Sum_probs=154.8
Q ss_pred CCeeccccC----CCCCeeeEEEEEEcccCcCCCCCcccCCCCCCCEEEccCCCCCCCCCccccCCCCcCEEeccCCcCC
Q 038019 51 PAIVCNCTF----DNGATCHITKLRVYGLNKKGVIPEELVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFS 126 (866)
Q Consensus 51 ~~v~C~~~~----~~~~~~~v~~L~l~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 126 (866)
.++.|.... ......+++.|++++|++++..+..|..+++|++|+|++|++++..+..|.++++|++|+|++|+++
T Consensus 10 ~~v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 89 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQ 89 (208)
T ss_dssp TEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CEEEecCCCccCCCCCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCC
Confidence 567775321 1123457999999999999877778999999999999999999777777899999999999999999
Q ss_pred CCCCccccCCCCCCEeeccCCCCCCCCchhhcCCCCccEEEeecCCCCCCChhhhhcCcCCCEEEecCCCCCCCCccccc
Q 038019 127 GPVPRELGNLKELTVLAFGTNNFSGALPPELGNLAKLEQLYIDSCGAGGEIPSTFAKLRNMQTLWASDNPFTGKIPDFIG 206 (866)
Q Consensus 127 ~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~ 206 (866)
+..+..|.++++|++|+|++|++++..+..+..+++|++|+|++|++++..+..|..+++|++|++++|.+.+
T Consensus 90 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~------- 162 (208)
T 2o6s_A 90 SLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC------- 162 (208)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-------
T ss_pred ccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-------
Confidence 7777789999999999999999998877789999999999999999998888889999999999999998764
Q ss_pred CCCCCCeEEccCCCCCCCCchhhcCCCC
Q 038019 207 NWTKLKSLRFQGNSFQGPIPSSLSKLAS 234 (866)
Q Consensus 207 ~l~~L~~L~L~~N~l~~~~p~~~~~l~~ 234 (866)
.+++|+.|+++.|+++|.+|..++.++.
T Consensus 163 ~~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 163 TCPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp CTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred CCCCHHHHHHHHHhCCceeeccCccccC
Confidence 4568999999999999999998887654
|
| >4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=3.2e-21 Score=205.96 Aligned_cols=140 Identities=22% Similarity=0.235 Sum_probs=104.1
Q ss_pred hhccCCCCCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHh-cC
Q 038019 635 VLVGIGSKPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIIS-GR 713 (866)
Q Consensus 635 ~~~~~~~~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~t-g~ 713 (866)
++|+.....|++..++...|+.|||+++.+..+....+.....||++|||||++.++.++.|+|||||||+||||+| |+
T Consensus 149 iiHRDlKp~NILl~~~~~~Ki~DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~~~~~~~~k~DVwS~Gvvl~Ellt~G~ 228 (299)
T 4asz_A 149 FVHRDLATRNCLVGENLLVKIGDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSLGVVLWEIFTYGK 228 (299)
T ss_dssp CCCSCCSGGGEEECGGGCEEECCCSCHHHHTGGGCEEETTTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTC
T ss_pred cccCccCHhhEEECCCCcEEECCcccceecCCCCceeecCceecChhhcCHHHHcCCCCCchhhHHHHHHHHHHHHcCCC
Confidence 34444444588998999999999999998876655444444579999999999999999999999999999999999 89
Q ss_pred CCCCCCchhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhcCcC
Q 038019 714 ASSDKSLDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLAGDIE 789 (866)
Q Consensus 714 ~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~~~~~ 789 (866)
.||......+ +...+ ..+... .. +......+.+++..||+.||++||||+||+++|+...+
T Consensus 229 ~Pf~~~~~~~---~~~~i----~~~~~~-----~~---p~~~~~~~~~li~~cl~~dP~~RPs~~~i~~~L~~~~~ 289 (299)
T 4asz_A 229 QPWYQLSNNE---VIECI----TQGRVL-----QR---PRTCPQEVYELMLGCWQREPHMRKNIKGIHTLLQNLAK 289 (299)
T ss_dssp CTTTTSCHHH---HHHHH----HHTCCC-----CC---CTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred CCCCCCCHHH---HHHHH----HcCCCC-----CC---CccchHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHHh
Confidence 9997654322 22222 222211 11 11222346667789999999999999999999986543
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.79 E-value=7.4e-19 Score=203.88 Aligned_cols=185 Identities=23% Similarity=0.353 Sum_probs=134.6
Q ss_pred CCCEEEccCCCCCCCCCccccCCCCcCEEeccCCcCCCCCCccccCCCCCCEeeccCCCCCCCCchhhcCCCCccEEEee
Q 038019 90 YLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKELTVLAFGTNNFSGALPPELGNLAKLEQLYID 169 (866)
Q Consensus 90 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~ 169 (866)
+|+.|+|++|.|++ +|..+ +++|++|+|++|+|+ .+| ..+++|++|+|++|++++ +|. +.+ +|++|+|+
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence 78888888888876 66655 377888888888887 566 456788888888888886 565 554 78888888
Q ss_pred cCCCCCCChhhhhcCcCCCEEEecCCCCCCCCcccccCCCCCCeEEccCCCCCCCCchhhcCCCCCCEEEccCccCCCCC
Q 038019 170 SCGAGGEIPSTFAKLRNMQTLWASDNPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLESLQMSDIYNVSSS 249 (866)
Q Consensus 170 ~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~ 249 (866)
+|++++ +|. .+++|+.|+|++|.+++ +|. .+++|+.|+|++|.+++ +|. |. ++|+.|
T Consensus 129 ~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L----------- 185 (571)
T 3cvr_A 129 NNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEAL----------- 185 (571)
T ss_dssp SSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEE-----------
T ss_pred CCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEE-----------
Confidence 888777 444 56778888888887775 554 45677777777777775 444 33 445554
Q ss_pred chhhhcCCCCCceeccCcccccCCCcccCC-----CCCcCEEeeecCcCcccCCcccCCCCCCcEEECcCCCCcccCCcc
Q 038019 250 LDFVMSLKNLTDLSLRNALITGTIPFGIGE-----LQMLQILDLSFNNLTGQIPATLFNIDSLEYLFLGNNSLSGTLPDQ 324 (866)
Q Consensus 250 ~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~-----l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~~p~~ 324 (866)
+|++|.++ .+|. +.. .+.|+.|+|++|+|+ .+|..+..+++|+.|+|++|++++.+|..
T Consensus 186 -------------~Ls~N~L~-~lp~-~~~~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~ 249 (571)
T 3cvr_A 186 -------------DVSTNLLE-SLPA-VPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRES 249 (571)
T ss_dssp -------------ECCSSCCS-SCCC-CC--------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHH
T ss_pred -------------ECcCCCCC-chhh-HHHhhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHH
Confidence 55555554 3333 332 123399999999999 58888888999999999999999877754
|
| >4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=3.2e-20 Score=202.69 Aligned_cols=140 Identities=19% Similarity=0.157 Sum_probs=103.5
Q ss_pred hhccCCCCCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHh-cC
Q 038019 635 VLVGIGSKPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIIS-GR 713 (866)
Q Consensus 635 ~~~~~~~~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~t-g~ 713 (866)
.+|+.....|++..++...|+.|||+++.+..+..........||++|||||++.++.++.|+|||||||+||||+| |+
T Consensus 206 iiHRDLK~~NILl~~~~~vKi~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~~~~y~~ksDVwS~Gv~l~El~t~G~ 285 (353)
T 4ase_A 206 CIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGA 285 (353)
T ss_dssp CCCSCCSGGGEEECGGGCEEECCCGGGSCTTTCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSC
T ss_pred eecCccCccceeeCCCCCEEECcchhhhhcccCCCceeeccccccccccCHHHHhcCCCCCcccEeehHHHHHHHHhCCC
Confidence 34444444588988999999999999999876654444445679999999999999999999999999999999998 99
Q ss_pred CCCCCCchhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhcCc
Q 038019 714 ASSDKSLDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLAGDI 788 (866)
Q Consensus 714 ~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~~~~ 788 (866)
.||......+ .+...+.++.. +..++.. ..++.+++..||+.||++||||.||++.|+..+
T Consensus 286 ~Pf~~~~~~~------~~~~~i~~g~~-----~~~p~~~---~~~~~~li~~c~~~dP~~RPt~~eil~~L~~ll 346 (353)
T 4ase_A 286 SPYPGVKIDE------EFCRRLKEGTR-----MRAPDYT---TPEMYQTMLDCWHGEPSQRPTFSELVEHLGNLL 346 (353)
T ss_dssp CSSTTCCCSH------HHHHHHHHTCC-----CCCCTTC---CHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred CCCCCCCHHH------HHHHHHHcCCC-----CCCCccC---CHHHHHHHHHHcCcChhHCcCHHHHHHHHHHHH
Confidence 9997543222 12222333321 1222222 234556777999999999999999999998654
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=99.78 E-value=9.3e-21 Score=224.21 Aligned_cols=212 Identities=17% Similarity=0.090 Sum_probs=147.2
Q ss_pred CCchhhcCCCCccEEEeecCCCCCCCh-hhhhcCcCCCEEEecCCCCCCCCcccccCCCCCCeEEccC-----------C
Q 038019 152 ALPPELGNLAKLEQLYIDSCGAGGEIP-STFAKLRNMQTLWASDNPFTGKIPDFIGNWTKLKSLRFQG-----------N 219 (866)
Q Consensus 152 ~~p~~l~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~-----------N 219 (866)
.+|..+..+++|++|+|++|.++.... ..+..+++|++|+++++...+.++..+..+++|++|+|++ |
T Consensus 284 ~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~ 363 (592)
T 3ogk_B 284 EMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEG 363 (592)
T ss_dssp TGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTC
T ss_pred HHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccC
Confidence 456667778899999999999765443 4468899999999984322223444556788999999993 5
Q ss_pred CCCCC-CchhhcCCCCCCEEEccCccCCCCCchhhhc-CCCCCceecc----CcccccC-----CCcccCCCCCcCEEee
Q 038019 220 SFQGP-IPSSLSKLASLESLQMSDIYNVSSSLDFVMS-LKNLTDLSLR----NALITGT-----IPFGIGELQMLQILDL 288 (866)
Q Consensus 220 ~l~~~-~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~-l~~L~~L~L~----~n~l~~~-----~p~~~~~l~~L~~L~L 288 (866)
.+++. ++..+..+++|+.|+++.+.+.......+.. +++|+.|+++ .|.+++. ++..+..+++|+.|++
T Consensus 364 ~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L 443 (592)
T 3ogk_B 364 LVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAF 443 (592)
T ss_dssp CCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEE
T ss_pred ccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEE
Confidence 55533 2333456899999999777776544555544 8899999996 6677753 3334667889999999
Q ss_pred ecCc--CcccCCcccC-CCCCCcEEECcCCCCccc-CCc--ccCCCCCEEEeeCCCCCCccCccc----ccccccccccc
Q 038019 289 SFNN--LTGQIPATLF-NIDSLEYLFLGNNSLSGT-LPD--QKSENLQKIDLSHNHLSGTFPLWV----NSELQMNLAVN 358 (866)
Q Consensus 289 s~N~--l~~~~p~~l~-~l~~L~~L~L~~N~l~g~-~p~--~~~~~L~~L~Ls~N~l~g~~p~~~----~~~~~l~l~~N 358 (866)
+.|. +++..+..+. .+++|++|+|++|++++. ++. ...++|+.|+|++|++++....++ .....|++++|
T Consensus 444 ~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n 523 (592)
T 3ogk_B 444 YLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGY 523 (592)
T ss_dssp ECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESC
T ss_pred ecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCC
Confidence 8543 6655555444 378899999999998752 222 234789999999999876533322 12234899999
Q ss_pred ccccc
Q 038019 359 NFKFD 363 (866)
Q Consensus 359 ~~~~~ 363 (866)
+++..
T Consensus 524 ~it~~ 528 (592)
T 3ogk_B 524 RASMT 528 (592)
T ss_dssp BCCTT
T ss_pred cCCHH
Confidence 87654
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.3e-18 Score=177.97 Aligned_cols=154 Identities=20% Similarity=0.252 Sum_probs=130.5
Q ss_pred EEEEEcccCcCCCCCcccCCCCCCCEEEccCCCCCCCCC-ccccCCCCcCEEeccCCcCCCCCCccccCCCCCCEeeccC
Q 038019 68 TKLRVYGLNKKGVIPEELVTLQYLTVLKIDQNFFTGPLP-SFIGNLSRLMFLSFSHNDFSGPVPRELGNLKELTVLAFGT 146 (866)
Q Consensus 68 ~~L~l~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~ 146 (866)
+.|++++|.++. +|..+. ..+++|+|++|.|++..+ ..|.++++|++|+|++|+|++..+..|.++++|++|+|++
T Consensus 14 ~~l~~s~n~l~~-iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLNK-IPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCccc-CccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 478888888875 666554 356899999999987655 4578999999999999999987788899999999999999
Q ss_pred CCCCCCCchhhcCCCCccEEEeecCCCCCCChhhhhcCcCCCEEEecCCCCCCCCcccccCCCCCCeEEccCCCCCCC
Q 038019 147 NNFSGALPPELGNLAKLEQLYIDSCGAGGEIPSTFAKLRNMQTLWASDNPFTGKIPDFIGNWTKLKSLRFQGNSFQGP 224 (866)
Q Consensus 147 N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ 224 (866)
|.+++..+..|..+++|++|+|++|++++..|..|..+++|++|+|++|++++..|..|..+++|+.|+|++|.+...
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 168 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCN 168 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECS
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCC
Confidence 999888888888899999999999999888888888888899999988888887788888888888888888888754
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
Probab=99.77 E-value=2.2e-18 Score=176.38 Aligned_cols=153 Identities=18% Similarity=0.240 Sum_probs=128.0
Q ss_pred EEEEEcccCcCCCCCcccCCCCCCCEEEccCCCCCCCCCccccCCCCcCEEeccCCcCCCCCCccccCCCCCCEeeccCC
Q 038019 68 TKLRVYGLNKKGVIPEELVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKELTVLAFGTN 147 (866)
Q Consensus 68 ~~L~l~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N 147 (866)
+.+++.+++++. +|..+. ++|+.|+|++|.|++..+..|.++++|++|+|++|+|++..|..|.++++|++|+|++|
T Consensus 14 ~~v~c~~~~l~~-iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLTE-IPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCSS-CCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcCc-CCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 356677777664 565554 68999999999999877778999999999999999999888899999999999999999
Q ss_pred CCCCCCchhhcCCCCccEEEeecCCCCCCChhhhhcCcCCCEEEecCCCCCCCCcccccCCCCCCeEEccCCCCCC
Q 038019 148 NFSGALPPELGNLAKLEQLYIDSCGAGGEIPSTFAKLRNMQTLWASDNPFTGKIPDFIGNWTKLKSLRFQGNSFQG 223 (866)
Q Consensus 148 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~ 223 (866)
.++...+..|..+++|++|+|++|++++..|..|..+++|++|+|++|++++..+..|..+++|+.|+|++|.+..
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 9987666667888999999999988888888888888888888888888887777778888888888888887753
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
Probab=99.77 E-value=1.8e-18 Score=185.10 Aligned_cols=173 Identities=23% Similarity=0.336 Sum_probs=108.6
Q ss_pred cCCCCCCCEEEccCCCCCCCCCccccCCCCcCEEeccCCcCCCCCCccccCCCCCCEeeccCCCCCCCCchhhcCCCCcc
Q 038019 85 LVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKELTVLAFGTNNFSGALPPELGNLAKLE 164 (866)
Q Consensus 85 l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~ 164 (866)
+..+++|+.|++++|.+... + .+..+++|++|+|++|++++..+ +.++++|++|+|++|.+++ + +.+..+++|+
T Consensus 42 ~~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~ 115 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-L-SSLKDLKKLK 115 (291)
T ss_dssp HHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-G-GGGTTCTTCC
T ss_pred hhhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-C-hhhccCCCCC
Confidence 34566777777777777643 3 36677777777777777765433 7777777777777777764 2 3466777777
Q ss_pred EEEeecCCCCCCChhhhhcCcCCCEEEecCCCCCCCCcccccCCCCCCeEEccCCCCCCCCchhhcCCCCCCEEEccCcc
Q 038019 165 QLYIDSCGAGGEIPSTFAKLRNMQTLWASDNPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLESLQMSDIY 244 (866)
Q Consensus 165 ~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~n~ 244 (866)
+|+|++|++++. ..+..+++|++|++++|++++. ..+..+++|+.|+|++|.+++..+ +..+++|+.|+++
T Consensus 116 ~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~--- 186 (291)
T 1h6t_A 116 SLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLS--- 186 (291)
T ss_dssp EEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECC---
T ss_pred EEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECC---
Confidence 777777766653 3466666777777777766643 456666666666666666664433 5555555555544
Q ss_pred CCCCCchhhhcCCCCCceeccCcccccCCCcccCCCCCcCEEeeecCcCcc
Q 038019 245 NVSSSLDFVMSLKNLTDLSLRNALITGTIPFGIGELQMLQILDLSFNNLTG 295 (866)
Q Consensus 245 ~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 295 (866)
+|.+++. + .+..+++|+.|++++|+++.
T Consensus 187 ---------------------~N~i~~l-~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 187 ---------------------KNHISDL-R-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp ---------------------SSCCCBC-G-GGTTCTTCSEEEEEEEEEEC
T ss_pred ---------------------CCcCCCC-h-hhccCCCCCEEECcCCcccC
Confidence 4444432 2 25566667777777776654
|
| >3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=4.7e-20 Score=198.09 Aligned_cols=150 Identities=13% Similarity=0.064 Sum_probs=101.7
Q ss_pred hhhccCCCCCcccCHHHHHHHhcCCccccccCCCCce--eEEEeecCCCCccCceeeecC------CCCchhHHHHHHHH
Q 038019 634 EVLVGIGSKPNIFGYAELRSATKDFNRSNKLGEGGYG--PVYKVTANSYGYLAPEYAMRG------HLTEKADVFSFGVV 705 (866)
Q Consensus 634 ~~~~~~~~~~~~~~~~~~~~~~~dF~~~~~lg~g~~g--~vy~~~~gt~gY~aPE~~~~~------~~t~ksDVySfGvv 705 (866)
.++|+.....|++.+++...++.|||+++.+..+... ......+||++|||||++.+. .++.|+||||||||
T Consensus 128 ~IiHRDlKp~NILl~~~~~~Ki~DFGla~~~~~~~~~~~~~~~~~~GT~~ymAPE~l~~~~~~~~~~~~~k~DVwS~Gvv 207 (303)
T 3hmm_A 128 AIAHRDLKSKNILVKKNGTCCIADLGLAVRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLV 207 (303)
T ss_dssp CEECSCCCGGGEEECTTSCEEECCCTTCEEEETTTTEESCC-----CCGGGCCHHHHTTCSCTTCHHHHHHHHHHHHHHH
T ss_pred CEeeccCCcccEEECCCCCEEEEeCCCCccccCCCCceeeecccccccccccCHHHhcccccccCCccChhHhhhhHHHH
Confidence 3455555556899989999999999999887654321 122345799999999998653 57889999999999
Q ss_pred HHHHHhcCCCCCCCchhh----h----hcHHHHHHHHhhcCCcccccCCcccc--cCHHHHHHHHHHHHHccCCCCCCCC
Q 038019 706 ALEIISGRASSDKSLDME----K----IYLLEWAWNLHENNQSFGLVDPTLTE--FNDKEALRVIGVALLCTQTSPMMRP 775 (866)
Q Consensus 706 LlEl~tg~~p~~~~~~~~----~----~~l~~~~~~~~~~~~~~~~~d~~l~~--~~~~~~~~~~~la~~C~~~~p~~RP 775 (866)
||||+||+.|+....... . ....+...... ..+.++|.++. ...+....+.+++.+||+.||++||
T Consensus 208 l~El~tg~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~----~~~~~rp~~p~~~~~~~~~~~l~~li~~cl~~dP~~RP 283 (303)
T 3hmm_A 208 FWEIARRCSIGGIHEDYQLPYYDLVPSDPSVEEMRKVV----CEQKLRPNIPNRWQSCEALRVMAKIMRECWYANGAARL 283 (303)
T ss_dssp HHHHHHTBCBTTBCCCCCCTTTTTSCSSCCHHHHHHHH----TTSCCCCCCCGGGGSSHHHHHHHHHHHTTCCSSGGGSC
T ss_pred HHHHHHCCCCCCccccccccchhcccccchHHHHHHHH----hcccCCCCCCccccchHHHHHHHHHHHHHcccCHhHCc
Confidence 999999988764321100 0 00111122221 12334565532 2234566778899999999999999
Q ss_pred CHHHHHHHHhcC
Q 038019 776 PMSRVVAMLAGD 787 (866)
Q Consensus 776 sm~~V~~~L~~~ 787 (866)
||.||+++|+..
T Consensus 284 t~~ei~~~L~~l 295 (303)
T 3hmm_A 284 TALRIKKTLSQL 295 (303)
T ss_dssp CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 999999999854
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
Probab=99.76 E-value=2.6e-18 Score=201.51 Aligned_cols=190 Identities=22% Similarity=0.265 Sum_probs=135.5
Q ss_pred EEEEEEcccCcCCCCCcccCCCCCCCEEEccCCCCCCCCCccccCCCCcCEEeccCCcCCCCCCccccCCCCCCEeeccC
Q 038019 67 ITKLRVYGLNKKGVIPEELVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKELTVLAFGT 146 (866)
Q Consensus 67 v~~L~l~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~ 146 (866)
+..+.+..+.+...++ +..|++|+.|+|++|.+.. ++ .|..|++|++|+|++|+|++..| +..+++|+.|+|++
T Consensus 23 l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~ 96 (605)
T 1m9s_A 23 TIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDE 96 (605)
T ss_dssp HHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCS
T ss_pred HHHHhccCCCcccccc--hhcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcC
Confidence 3334444444444333 4567788888888888864 34 47888888888888888876544 78888888888888
Q ss_pred CCCCCCCchhhcCCCCccEEEeecCCCCCCChhhhhcCcCCCEEEecCCCCCCCCcccccCCCCCCeEEccCCCCCCCCc
Q 038019 147 NNFSGALPPELGNLAKLEQLYIDSCGAGGEIPSTFAKLRNMQTLWASDNPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIP 226 (866)
Q Consensus 147 N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p 226 (866)
|.+++. +.+..+++|+.|+|++|.+++. ..+..|++|+.|+|++|.+++. ..+..+++|+.|+|++|.+.+..|
T Consensus 97 N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~ 170 (605)
T 1m9s_A 97 NKIKDL--SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP 170 (605)
T ss_dssp SCCCCC--TTSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG
T ss_pred CCCCCC--hhhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh
Confidence 888753 3678888888888888888763 3577888888888888888764 567778888888888888876555
Q ss_pred hhhcCCCCCCEEEccCccCCCCCchhhhcCCCCCceeccCcccccC
Q 038019 227 SSLSKLASLESLQMSDIYNVSSSLDFVMSLKNLTDLSLRNALITGT 272 (866)
Q Consensus 227 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 272 (866)
+..+++|+.|+|++|.+... +.+..+++|+.|+|++|.+.+.
T Consensus 171 --l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 171 --LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp --GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECC
T ss_pred --hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCC
Confidence 77777777777777766543 3456666666666666666543
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.3e-18 Score=192.32 Aligned_cols=174 Identities=19% Similarity=0.216 Sum_probs=134.4
Q ss_pred EEEEEcccCcCCCCCcccCCCCCCCEEEccCCCCCCCCCcccc-CCCCcCEEeccCCcCCCCCCccccCCCCCCEeeccC
Q 038019 68 TKLRVYGLNKKGVIPEELVTLQYLTVLKIDQNFFTGPLPSFIG-NLSRLMFLSFSHNDFSGPVPRELGNLKELTVLAFGT 146 (866)
Q Consensus 68 ~~L~l~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~-~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~ 146 (866)
+.+++.+++++. +|..+. ..|+.|+|++|+|++..+..|. ++++|++|+|++|+|++..+..|.++++|++|+|++
T Consensus 21 ~~l~c~~~~l~~-iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLPN-VPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCSS-CCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCc-cCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 467788887775 565554 4688999999999887777787 899999999999999887778899999999999999
Q ss_pred CCCCCCCchhhcCCCCccEEEeecCCCCCCChhhhhcCcCCCEEEecCCCCCCCCcccc---cCCCCCCeEEccCCCCCC
Q 038019 147 NNFSGALPPELGNLAKLEQLYIDSCGAGGEIPSTFAKLRNMQTLWASDNPFTGKIPDFI---GNWTKLKSLRFQGNSFQG 223 (866)
Q Consensus 147 N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l---~~l~~L~~L~L~~N~l~~ 223 (866)
|+++...+..|..+++|+.|+|++|++++..|..|.++++|++|+|++|++++..+..| ..+++|+.|+|++|+|++
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 177 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK 177 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence 99987777788888999999999888888888888888888888888888886544444 467788888888888776
Q ss_pred CCchhhcCCCCC--CEEEccCcc
Q 038019 224 PIPSSLSKLASL--ESLQMSDIY 244 (866)
Q Consensus 224 ~~p~~~~~l~~L--~~L~l~~n~ 244 (866)
..+..+..++.+ +.|+|++|.
T Consensus 178 l~~~~~~~l~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 178 LPLTDLQKLPAWVKNGLYLHNNP 200 (361)
T ss_dssp CCHHHHHHSCHHHHTTEECCSSC
T ss_pred cCHHHhhhccHhhcceEEecCCC
Confidence 555555555442 444444443
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.76 E-value=7.5e-18 Score=173.55 Aligned_cols=143 Identities=20% Similarity=0.274 Sum_probs=123.1
Q ss_pred CCCcccCCCCCCCEEEccCCCCCCCCCccccCCCCcCEEeccCCcCCCCCCccccCCCCCCEeeccCCCCCCCCchhhcC
Q 038019 80 VIPEELVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKELTVLAFGTNNFSGALPPELGN 159 (866)
Q Consensus 80 ~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~ 159 (866)
.+|..+. ++|++|+|++|.|++..|..|.++++|++|+|++|+|+...+..|..+++|++|+|++|++++..+..|..
T Consensus 33 ~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~ 110 (229)
T 3e6j_A 33 SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDR 110 (229)
T ss_dssp SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCc
Confidence 4555444 78999999999999888889999999999999999998766677899999999999999999877777889
Q ss_pred CCCccEEEeecCCCCCCChhhhhcCcCCCEEEecCCCCCCCCcccccCCCCCCeEEccCCCCCCCC
Q 038019 160 LAKLEQLYIDSCGAGGEIPSTFAKLRNMQTLWASDNPFTGKIPDFIGNWTKLKSLRFQGNSFQGPI 225 (866)
Q Consensus 160 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~ 225 (866)
+++|++|+|++|+++ .+|..+..+++|++|+|++|++++..+..|..+++|+.|+|++|.+....
T Consensus 111 l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 175 (229)
T 3e6j_A 111 LVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCEC 175 (229)
T ss_dssp CTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTB
T ss_pred chhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCc
Confidence 999999999999988 67788888999999999999998777777888889999999998887543
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
Probab=99.76 E-value=5.1e-18 Score=181.50 Aligned_cols=168 Identities=25% Similarity=0.344 Sum_probs=143.8
Q ss_pred eeeEEEEEEcccCcCCCCCcccCCCCCCCEEEccCCCCCCCCCccccCCCCcCEEeccCCcCCCCCCccccCCCCCCEee
Q 038019 64 TCHITKLRVYGLNKKGVIPEELVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKELTVLA 143 (866)
Q Consensus 64 ~~~v~~L~l~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 143 (866)
..+++.|++.+|.++.. + .+..+++|++|+|++|.+++..+ +.++++|++|+|++|.+++ + ..+..+++|++|+
T Consensus 45 l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~ 118 (291)
T 1h6t_A 45 LNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-L-SSLKDLKKLKSLS 118 (291)
T ss_dssp HHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-G-GGGTTCTTCCEEE
T ss_pred cCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-C-hhhccCCCCCEEE
Confidence 34789999999998765 3 48999999999999999997544 9999999999999999985 3 4599999999999
Q ss_pred ccCCCCCCCCchhhcCCCCccEEEeecCCCCCCChhhhhcCcCCCEEEecCCCCCCCCcccccCCCCCCeEEccCCCCCC
Q 038019 144 FGTNNFSGALPPELGNLAKLEQLYIDSCGAGGEIPSTFAKLRNMQTLWASDNPFTGKIPDFIGNWTKLKSLRFQGNSFQG 223 (866)
Q Consensus 144 Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~ 223 (866)
|++|++++. ..+..+++|+.|+|++|++++. ..+..+++|++|++++|++++..+ +..+++|+.|+|++|.+++
T Consensus 119 L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~ 192 (291)
T 1h6t_A 119 LEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD 192 (291)
T ss_dssp CTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB
T ss_pred CCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC
Confidence 999999874 5799999999999999999886 679999999999999999997655 8999999999999999985
Q ss_pred CCchhhcCCCCCCEEEccCccC
Q 038019 224 PIPSSLSKLASLESLQMSDIYN 245 (866)
Q Consensus 224 ~~p~~~~~l~~L~~L~l~~n~~ 245 (866)
. + .+..+++|+.|++++|.+
T Consensus 193 l-~-~l~~l~~L~~L~l~~n~i 212 (291)
T 1h6t_A 193 L-R-ALAGLKNLDVLELFSQEC 212 (291)
T ss_dssp C-G-GGTTCTTCSEEEEEEEEE
T ss_pred C-h-hhccCCCCCEEECcCCcc
Confidence 3 3 366666666666665544
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
Probab=99.75 E-value=2.4e-18 Score=201.88 Aligned_cols=191 Identities=19% Similarity=0.253 Sum_probs=133.4
Q ss_pred CCCCEEEccCCCCCCCCCccccCCCCcCEEeccCCcCCCCCCccccCCCCCCEeeccCCCCCCCCchhhcCCCCccEEEe
Q 038019 89 QYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKELTVLAFGTNNFSGALPPELGNLAKLEQLYI 168 (866)
Q Consensus 89 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 168 (866)
..+..++|..+.+.+..+ +..|++|++|+|++|.+.. ++ .|..|++|+.|+|++|.+++..+ +..+++|+.|+|
T Consensus 21 ~~l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~L 94 (605)
T 1m9s_A 21 AETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFL 94 (605)
T ss_dssp HHHHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEEC
T ss_pred HHHHHHhccCCCcccccc--hhcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEEC
Confidence 345556677777765433 5678888888888888874 33 58888888888888888886544 888888888888
Q ss_pred ecCCCCCCChhhhhcCcCCCEEEecCCCCCCCCcccccCCCCCCeEEccCCCCCCCCchhhcCCCCCCEEEccCccCCCC
Q 038019 169 DSCGAGGEIPSTFAKLRNMQTLWASDNPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLESLQMSDIYNVSS 248 (866)
Q Consensus 169 ~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~n~~~~~ 248 (866)
++|.+++. | .+..+++|+.|+|++|.+++. ..+..+++|+.|+|++|.+++. ..+..+++|+.|+|++|.+...
T Consensus 95 s~N~l~~l-~-~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~ 168 (605)
T 1m9s_A 95 DENKIKDL-S-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDI 168 (605)
T ss_dssp CSSCCCCC-T-TSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCC
T ss_pred cCCCCCCC-h-hhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCc
Confidence 88888763 2 577888888888888888753 3577778888888888887754 5566777777777766665543
Q ss_pred CchhhhcCCCCCceeccCcccccCCCcccCCCCCcCEEeeecCcCcc
Q 038019 249 SLDFVMSLKNLTDLSLRNALITGTIPFGIGELQMLQILDLSFNNLTG 295 (866)
Q Consensus 249 ~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 295 (866)
.. +..+++|+.|+|++|.+++. ..+..+++|+.|+|++|.+.+
T Consensus 169 ~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 169 VP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp GG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEEC
T ss_pred hh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcC
Confidence 32 55666666666666666543 235566666666666666654
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
Probab=99.75 E-value=8e-18 Score=172.13 Aligned_cols=151 Identities=17% Similarity=0.200 Sum_probs=132.5
Q ss_pred CEEEccCCCCCCCCCccccCCCCcCEEeccCCcCCCCCCccccCCCCCCEeeccCCCCCCCCchhhcCCCCccEEEeecC
Q 038019 92 TVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKELTVLAFGTNNFSGALPPELGNLAKLEQLYIDSC 171 (866)
Q Consensus 92 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n 171 (866)
+.++++++.++ .+|..+. ++|++|+|++|+|++..+..|..+++|++|+|++|++++..|..|.++++|++|+|++|
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 57899999998 5676554 68999999999999877889999999999999999999888999999999999999999
Q ss_pred CCCCCChhhhhcCcCCCEEEecCCCCCCCCcccccCCCCCCeEEccCCCCCCCCchhhcCCCCCCEEEccCccC
Q 038019 172 GAGGEIPSTFAKLRNMQTLWASDNPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLESLQMSDIYN 245 (866)
Q Consensus 172 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~n~~ 245 (866)
+++...+..|.++++|++|+|++|++++..|..|..+++|+.|+|++|.+++..+..|..+++|+.|+|++|.+
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence 99987777788999999999999999988888899999999999999999987777788888888877777654
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=99.75 E-value=1.6e-20 Score=222.20 Aligned_cols=294 Identities=15% Similarity=0.134 Sum_probs=156.5
Q ss_pred eEEEEEEcccCcCCCCCcccCCC--CCCCEEEccCCC-CCC-CCCccccCCCCcCEEeccCCcCCCC----CCccccCCC
Q 038019 66 HITKLRVYGLNKKGVIPEELVTL--QYLTVLKIDQNF-FTG-PLPSFIGNLSRLMFLSFSHNDFSGP----VPRELGNLK 137 (866)
Q Consensus 66 ~v~~L~l~~~~l~~~~p~~l~~l--~~L~~L~Ls~n~-l~~-~~p~~l~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~ 137 (866)
++++|+|++|.+++..+..+..+ .+|++|+|++|. ++. .++..+.++++|++|+|++|.+++. ++..+.+++
T Consensus 113 ~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~ 192 (592)
T 3ogk_B 113 QLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNT 192 (592)
T ss_dssp TCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCC
T ss_pred CCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCC
Confidence 56667776666555444444432 235555555543 110 0111223455555555555555433 222334445
Q ss_pred CCCEeeccCCCCCCC----CchhhcCCCCccEEEeecCCCCCCChhhhhcCcCCCEEEe---------------------
Q 038019 138 ELTVLAFGTNNFSGA----LPPELGNLAKLEQLYIDSCGAGGEIPSTFAKLRNMQTLWA--------------------- 192 (866)
Q Consensus 138 ~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L--------------------- 192 (866)
+|++|+|++|.+++. ++..+.++++|+.|+|++|.+.+ +|..+.++++|++|++
T Consensus 193 ~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~ 271 (592)
T 3ogk_B 193 SLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRK 271 (592)
T ss_dssp CCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTT
T ss_pred CccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhcccc
Confidence 555555555555422 22223345555555555554443 3344444444444444
Q ss_pred ------cCCCCCCCCcccccCCCCCCeEEccCCCCCCCCc-hhhcCCCCCCEEEccCccCCCCCc-hhhhcCCCCCceec
Q 038019 193 ------SDNPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIP-SSLSKLASLESLQMSDIYNVSSSL-DFVMSLKNLTDLSL 264 (866)
Q Consensus 193 ------~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~L 264 (866)
.++. .+.+|..+..+++|++|+|++|.+++... ..+..+++|+.|+++ +.+..... ..+..+++|++|+|
T Consensus 272 L~~L~l~~~~-~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L 349 (592)
T 3ogk_B 272 LCRLGLSYMG-PNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRI 349 (592)
T ss_dssp CCEEEETTCC-TTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEE
T ss_pred ccccCccccc-hhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEe
Confidence 3321 23456666777788888888888654333 345778888888887 33322222 23355777888888
Q ss_pred cC-----------cccccC-CCcccCCCCCcCEEeeecCcCcccCCcccCC-CCCCcEEECc----CCCCcccCCc----
Q 038019 265 RN-----------ALITGT-IPFGIGELQMLQILDLSFNNLTGQIPATLFN-IDSLEYLFLG----NNSLSGTLPD---- 323 (866)
Q Consensus 265 ~~-----------n~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~-l~~L~~L~L~----~N~l~g~~p~---- 323 (866)
++ |.+++. ++..+..+++|+.|+++.|.+++..+..+.. +++|+.|+++ .|.+++....
T Consensus 350 ~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~ 429 (592)
T 3ogk_B 350 ERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVR 429 (592)
T ss_dssp ECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHH
T ss_pred ecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHH
Confidence 73 455432 2222344677788888777777666665554 7777777775 5666643111
Q ss_pred ---ccCCCCCEEEeeCC--CCCCccCcccc---ccc-ccccccccccc
Q 038019 324 ---QKSENLQKIDLSHN--HLSGTFPLWVN---SEL-QMNLAVNNFKF 362 (866)
Q Consensus 324 ---~~~~~L~~L~Ls~N--~l~g~~p~~~~---~~~-~l~l~~N~~~~ 362 (866)
..+++|+.|+|++| .+++..+..+. ..+ .|++++|.++.
T Consensus 430 ~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~ 477 (592)
T 3ogk_B 430 SLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESD 477 (592)
T ss_dssp HHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSH
T ss_pred HHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCH
Confidence 12467777777643 35554443332 122 36777776653
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.75 E-value=5.5e-18 Score=187.30 Aligned_cols=176 Identities=18% Similarity=0.150 Sum_probs=144.0
Q ss_pred CEEEccCCCCCCCCCccccCCCCcCEEeccCCcCCCCCCcccc-CCCCCCEeeccCCCCCCCCchhhcCCCCccEEEeec
Q 038019 92 TVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRELG-NLKELTVLAFGTNNFSGALPPELGNLAKLEQLYIDS 170 (866)
Q Consensus 92 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~-~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~ 170 (866)
+.+++++|.++ .+|..+. ..|++|+|++|+|++..+..|. ++++|++|+|++|++++..+..|.++++|++|+|++
T Consensus 21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 58999999998 4676554 4689999999999988888887 999999999999999988888899999999999999
Q ss_pred CCCCCCChhhhhcCcCCCEEEecCCCCCCCCcccccCCCCCCeEEccCCCCCCCCchhh---cCCCCCCEEEccCccCCC
Q 038019 171 CGAGGEIPSTFAKLRNMQTLWASDNPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSL---SKLASLESLQMSDIYNVS 247 (866)
Q Consensus 171 n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~---~~l~~L~~L~l~~n~~~~ 247 (866)
|+++...+..|..+++|++|+|++|++++..|..|.++++|+.|+|++|++++..+..| ..+++|+.|+|++|.+..
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 177 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK 177 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence 99998888889999999999999999998888899999999999999999986555555 457777777777777766
Q ss_pred CCchhhhcCCC--CCceeccCcccc
Q 038019 248 SSLDFVMSLKN--LTDLSLRNALIT 270 (866)
Q Consensus 248 ~~~~~~~~l~~--L~~L~L~~n~l~ 270 (866)
.....+..++. |+.|+|++|.+.
T Consensus 178 l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 178 LPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred cCHHHhhhccHhhcceEEecCCCcc
Confidence 55555555554 255555555554
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.75 E-value=9.8e-18 Score=171.47 Aligned_cols=152 Identities=16% Similarity=0.192 Sum_probs=134.8
Q ss_pred CEEEccCCCCCCCCCccccCCCCcCEEeccCCcCCCCCC-ccccCCCCCCEeeccCCCCCCCCchhhcCCCCccEEEeec
Q 038019 92 TVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVP-RELGNLKELTVLAFGTNNFSGALPPELGNLAKLEQLYIDS 170 (866)
Q Consensus 92 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~ 170 (866)
+.|++++|.++ .+|..+. ..+++|+|++|+|++..| ..|..+++|++|+|++|.+++..+..|.++++|++|+|++
T Consensus 14 ~~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 58999999998 4676554 457899999999997755 4589999999999999999988888999999999999999
Q ss_pred CCCCCCChhhhhcCcCCCEEEecCCCCCCCCcccccCCCCCCeEEccCCCCCCCCchhhcCCCCCCEEEccCccCC
Q 038019 171 CGAGGEIPSTFAKLRNMQTLWASDNPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLESLQMSDIYNV 246 (866)
Q Consensus 171 n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~n~~~ 246 (866)
|.+++..+..|..+++|++|+|++|++++..|..|.++++|++|+|++|++++..|..|..+++|+.|++++|.+.
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 9999999999999999999999999999888999999999999999999999888888888888888888777654
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.73 E-value=4e-17 Score=168.11 Aligned_cols=151 Identities=19% Similarity=0.219 Sum_probs=130.9
Q ss_pred CEEEccCCCCCCCCCccccCCCCcCEEeccCCcCCCCCCccccCCCCCCEeeccCCCCCCCCchhhcCCCCccEEEeecC
Q 038019 92 TVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKELTVLAFGTNNFSGALPPELGNLAKLEQLYIDSC 171 (866)
Q Consensus 92 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n 171 (866)
+.++.+++.++ .+|..+. ++|++|+|++|+|++..|..|.++++|++|+|++|+++...+..|..+++|+.|+|++|
T Consensus 22 ~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N 98 (229)
T 3e6j_A 22 TTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN 98 (229)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC
Confidence 35667777776 5666544 89999999999999988999999999999999999998777777899999999999999
Q ss_pred CCCCCChhhhhcCcCCCEEEecCCCCCCCCcccccCCCCCCeEEccCCCCCCCCchhhcCCCCCCEEEccCccCC
Q 038019 172 GAGGEIPSTFAKLRNMQTLWASDNPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLESLQMSDIYNV 246 (866)
Q Consensus 172 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~n~~~ 246 (866)
++++..+..|..+++|++|+|++|+++ .+|..+..+++|++|+|++|++++..+..|..+++|+.|++++|.+.
T Consensus 99 ~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 99 QLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred cCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 999888888999999999999999998 77888899999999999999999777777888888888888777654
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=99.73 E-value=7.2e-19 Score=211.46 Aligned_cols=192 Identities=17% Similarity=0.184 Sum_probs=109.7
Q ss_pred eeEEEEEEcccCcCCCCCcccCCCCCCCE-----EEccCCCCCCCCCccccCCCCcCEEeccCCcCCCCCCccccCCCCC
Q 038019 65 CHITKLRVYGLNKKGVIPEELVTLQYLTV-----LKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKEL 139 (866)
Q Consensus 65 ~~v~~L~l~~~~l~~~~p~~l~~l~~L~~-----L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L 139 (866)
.+++.|+|.++++... +..+.....|+. ++++.|.+. ..+..|..+++|+.|+|++|.+. .+|..+.++++|
T Consensus 173 ~~~~~l~L~~n~~~~~-~~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L 249 (727)
T 4b8c_D 173 PLTPKIELFANGKDEA-NQALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFL 249 (727)
T ss_dssp ---------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSC
T ss_pred CccceEEeeCCCCCcc-hhhHhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCC
Confidence 5688999988887763 333322222222 233334443 45777888888888888888887 677777788888
Q ss_pred CEeeccCCCCCCCCchhhcCCCCccEEEeecCCCCCCChhhhhcCcCCCEEEecCCCCCCCCcccccCCCCCCeEEccCC
Q 038019 140 TVLAFGTNNFSGALPPELGNLAKLEQLYIDSCGAGGEIPSTFAKLRNMQTLWASDNPFTGKIPDFIGNWTKLKSLRFQGN 219 (866)
Q Consensus 140 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N 219 (866)
++|+|++|.|+ .+|..|++|++|++|+|++|.++ .+|..|++|++|++|+|++|.|+ .+|..|+++++|+.|+|++|
T Consensus 250 ~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N 326 (727)
T 4b8c_D 250 TRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGN 326 (727)
T ss_dssp SCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTS
T ss_pred CEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCC
Confidence 88888888888 77888888888888888888888 66888888888888888888887 67777888888888888888
Q ss_pred CCCCCCchhhcCCCCCCEEEccCccCCCCCchhhhcCCCCCceeccCcccccCCCcccCCCCCcCEEeeecC
Q 038019 220 SFQGPIPSSLSKLASLESLQMSDIYNVSSSLDFVMSLKNLTDLSLRNALITGTIPFGIGELQMLQILDLSFN 291 (866)
Q Consensus 220 ~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N 291 (866)
.|++.+|..+..+.. .+..|+|++|.+++.+|.. |..|+++.|
T Consensus 327 ~l~~~~p~~~~~~~~-----------------------~~~~l~l~~N~l~~~~p~~------l~~l~l~~n 369 (727)
T 4b8c_D 327 PLEKQFLKILTEKSV-----------------------TGLIFYLRDNRPEIPLPHE------RRFIEINTD 369 (727)
T ss_dssp CCCSHHHHHHHHHHH-----------------------HHHHHHHHHCCCCCCCCCC---------------
T ss_pred ccCCCChHHHhhcch-----------------------hhhHHhhccCcccCcCccc------cceeEeecc
Confidence 888777766543210 1123567788887777653 455566655
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.72 E-value=2.3e-17 Score=165.67 Aligned_cols=153 Identities=18% Similarity=0.153 Sum_probs=92.6
Q ss_pred CCCCCCCEEEccCCCCCCCCCccccCCCCcCEEeccCCcCCCCCCccccCCCCCCEeeccCCCCCCCCchhhcCCCCccE
Q 038019 86 VTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKELTVLAFGTNNFSGALPPELGNLAKLEQ 165 (866)
Q Consensus 86 ~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~ 165 (866)
..+++|+.|+|++|.++ .+| .+..+++|++|+|++|.++ .+..+..+++|++|+|++|.+++..+..++.+++|++
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 44556666666666665 344 4666666666666666543 2235666666666666666666555566666666666
Q ss_pred EEeecCCCCCCChhhhhcCcCCCEEEecCCC-CCCCCcccccCCCCCCeEEccCCCCCCCCchhhcCCCCCCEEEccCcc
Q 038019 166 LYIDSCGAGGEIPSTFAKLRNMQTLWASDNP-FTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLESLQMSDIY 244 (866)
Q Consensus 166 L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~-l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~n~ 244 (866)
|+|++|++++..|..+..+++|++|++++|. ++ .+| .+..+++|+.|++++|.+++. + .+..+++|+.|++++|.
T Consensus 117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~-~-~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDY-R-GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCC-T-TGGGCSSCCEEEECBC-
T ss_pred EEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcCh-H-HhccCCCCCEEEeeCcc
Confidence 6666666666666666666666666666666 43 344 466666666666666666642 2 56666666666666665
Q ss_pred CC
Q 038019 245 NV 246 (866)
Q Consensus 245 ~~ 246 (866)
+.
T Consensus 193 i~ 194 (197)
T 4ezg_A 193 IG 194 (197)
T ss_dssp --
T ss_pred cC
Confidence 43
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.71 E-value=2.5e-17 Score=165.45 Aligned_cols=150 Identities=18% Similarity=0.191 Sum_probs=71.0
Q ss_pred eEEEEEEcccCcCCCCCcccCCCCCCCEEEccCCCCCCCCCccccCCCCcCEEeccCCcCCCCCCccccCCCCCCEeecc
Q 038019 66 HITKLRVYGLNKKGVIPEELVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKELTVLAFG 145 (866)
Q Consensus 66 ~v~~L~l~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls 145 (866)
+++.|++++|.++ .+| .+..+++|++|+|++|.++ .+..+..+++|++|+|++|.+++..|..|+.+++|++|+|+
T Consensus 45 ~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls 120 (197)
T 4ezg_A 45 SLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDIS 120 (197)
T ss_dssp TCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECC
T ss_pred CccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEec
Confidence 4445555555444 233 3445555555555555443 12244455555555555555554444445555555555555
Q ss_pred CCCCCCCCchhhcCCCCccEEEeecCCCCCCChhhhhcCcCCCEEEecCCCCCCCCcccccCCCCCCeEEccCCCCC
Q 038019 146 TNNFSGALPPELGNLAKLEQLYIDSCGAGGEIPSTFAKLRNMQTLWASDNPFTGKIPDFIGNWTKLKSLRFQGNSFQ 222 (866)
Q Consensus 146 ~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~ 222 (866)
+|.+++..|..++.+++|++|+|++|...+.+| .+..+++|++|++++|.+++. + .+..+++|+.|++++|++.
T Consensus 121 ~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~-~-~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 121 HSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDY-R-GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp SSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCC-T-TGGGCSSCCEEEECBC---
T ss_pred CCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcCh-H-HhccCCCCCEEEeeCcccC
Confidence 555554444455555555555555554222223 344555555555555555432 2 3444555555555555443
|
| >4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=2e-18 Score=186.27 Aligned_cols=142 Identities=18% Similarity=0.168 Sum_probs=93.6
Q ss_pred hhccCCCCCcccCHHHH-HHHhcCCccccccCCCCceeEE---EeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHH
Q 038019 635 VLVGIGSKPNIFGYAEL-RSATKDFNRSNKLGEGGYGPVY---KVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEII 710 (866)
Q Consensus 635 ~~~~~~~~~~~~~~~~~-~~~~~dF~~~~~lg~g~~g~vy---~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~ 710 (866)
++|++.+..|++...+. ..++.|||+++.+...+.+... ...+||+.|||||.+.+..++.++|||||||++|||+
T Consensus 171 IiHRDlKp~NILl~~~g~~vKl~DFGla~~~~~~~~~~~~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyeml 250 (336)
T 4g3f_A 171 ILHGDVKADNVLLSSDGSRAALCDFGHALCLQPDGLGKSLLTGDYIPGTETHMAPEVVMGKPCDAKVDIWSSCCMMLHML 250 (336)
T ss_dssp EECSCCCGGGEEECTTSCCEEECCCTTCEEC------------CCCCCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHH
T ss_pred ceecccCHHHEEEeCCCCEEEEeeCCCCeEccCCCcccceecCCccccCccccCHHHHCCCCCCcHHHHHHHHHHHHHHH
Confidence 34444444477776665 5789999999998766544322 2347999999999999999999999999999999999
Q ss_pred hcCCCCCCCchhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhcCcC
Q 038019 711 SGRASSDKSLDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLAGDIE 789 (866)
Q Consensus 711 tg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~~~~~ 789 (866)
||+.||......+ +...+.. .. +.+.+.+......+.++..+|++.||++|||+.|+++.|.....
T Consensus 251 tG~~Pf~~~~~~~---~~~~i~~---~~-------~~~~~~~~~~s~~~~~li~~~L~~dP~~R~sa~el~~~l~~~l~ 316 (336)
T 4g3f_A 251 NGCHPWTQYFRGP---LCLKIAS---EP-------PPIREIPPSCAPLTAQAIQEGLRKEPVHRASAMELRRKVGKALQ 316 (336)
T ss_dssp HSSCSSTTTCCSC---CHHHHHH---SC-------CGGGGSCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred HCcCCCCCCCHHH---HHHHHHc---CC-------CCchhcCccCCHHHHHHHHHHccCCHhHCcCHHHHHHHHHHHHh
Confidence 9999997544322 2211111 10 11111111112234455669999999999999999998875443
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=5.7e-20 Score=214.36 Aligned_cols=118 Identities=24% Similarity=0.262 Sum_probs=62.2
Q ss_pred CCEEEecCCCCCCCCcccccCCCCCCeEEccCCCCCCCCchhhcCCCCCCEEEccCccCCCCCchhhhcCCCCCceeccC
Q 038019 187 MQTLWASDNPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLESLQMSDIYNVSSSLDFVMSLKNLTDLSLRN 266 (866)
Q Consensus 187 L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~ 266 (866)
|+.|+|++|.+++ +|. ++.+++|+.|+|++|.++ .+|..|+++++|+.|+ |++
T Consensus 443 L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~------------------------Ls~ 495 (567)
T 1dce_A 443 VRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQ------------------------ASD 495 (567)
T ss_dssp CSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEE------------------------CCS
T ss_pred ceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEE------------------------CCC
Confidence 5555555555553 343 555555555555555555 4455555544444444 444
Q ss_pred cccccCCCcccCCCCCcCEEeeecCcCcccC-CcccCCCCCCcEEECcCCCCcccCCcc-----cCCCCCEEE
Q 038019 267 ALITGTIPFGIGELQMLQILDLSFNNLTGQI-PATLFNIDSLEYLFLGNNSLSGTLPDQ-----KSENLQKID 333 (866)
Q Consensus 267 n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~L~~N~l~g~~p~~-----~~~~L~~L~ 333 (866)
|.+++ +| .++.+++|+.|+|++|+|++.. |..+..+++|+.|+|++|++++..|.. .+++|+.|+
T Consensus 496 N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 496 NALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp SCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred CCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence 44443 33 4555555555555555555544 555555566666666666655544321 135555554
|
| >2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=1.5e-17 Score=180.75 Aligned_cols=154 Identities=32% Similarity=0.429 Sum_probs=124.6
Q ss_pred ccCCCCCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCC
Q 038019 637 VGIGSKPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASS 716 (866)
Q Consensus 637 ~~~~~~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~ 716 (866)
|......|++...+...++.|||.++..+............||.+|+|||.+..+.++.++|||||||+++||+||+.|+
T Consensus 162 H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~p~ 241 (321)
T 2qkw_B 162 HRDVKSINILLDENFVPKITDFGISKKGTELDQTHLSTVVKGTLGYIDPEYFIKGRLTEKSDVYSFGVVLFEVLCARSAI 241 (321)
T ss_dssp CSCCCSTTEEECTTCCEEECCCTTCEECSSSSCCCCBCCCEEETTTCCHHHHHHCBCCTHHHHHHHHHHHHHHHHCCTTC
T ss_pred cCCCCHHHEEECCCCCEEEeecccccccccccccccccccCCCccccCHHHhcCCCCCcccchHhHHHHHHHHHhCCCcc
Confidence 33334447777777778899999998765443333334456899999999999999999999999999999999999999
Q ss_pred CCCchhhhhcHHHHHHHHhhcCCcccccCCccc-ccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhcCcCC
Q 038019 717 DKSLDMEKIYLLEWAWNLHENNQSFGLVDPTLT-EFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLAGDIEV 790 (866)
Q Consensus 717 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~-~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~~~~~~ 790 (866)
....+.+.....+|.......+...+++++.+. ....+....+.+++..|++.||++||+|.||++.|+...+.
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~~l~~ 316 (321)
T 2qkw_B 242 VQSLPREMVNLAEWAVESHNNGQLEQIVDPNLADKIRPESLRKFGDTAVKCLALSSEDRPSMGDVLWKLEYALRL 316 (321)
T ss_dssp SCSSSSSCCCHHHHTHHHHTTTCCCSSSSSSCTTCSCHHHHHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHS
T ss_pred cccCcHHHHHHHHHhhhccccccHHHhcChhhccccCHHHHHHHHHHHHHHcCCCcccCcCHHHHHHHHHHHhhc
Confidence 876666667788888887777878888888774 45667778888999999999999999999999999965544
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=99.68 E-value=9.7e-19 Score=206.92 Aligned_cols=248 Identities=15% Similarity=0.136 Sum_probs=150.4
Q ss_pred eeEEEEEEcccCcCCCCCcccC-CCCCCCEEEccCC-CCCCC-CCccccCCCCcCEEeccCCcCCCCCCcccc----CCC
Q 038019 65 CHITKLRVYGLNKKGVIPEELV-TLQYLTVLKIDQN-FFTGP-LPSFIGNLSRLMFLSFSHNDFSGPVPRELG----NLK 137 (866)
Q Consensus 65 ~~v~~L~l~~~~l~~~~p~~l~-~l~~L~~L~Ls~n-~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~----~l~ 137 (866)
.++++|+++++.+++..+..+. .+++|++|+|++| .++.. ++..+.++++|++|+|++|.+++..+..+. .++
T Consensus 105 ~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~ 184 (594)
T 2p1m_B 105 TWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYT 184 (594)
T ss_dssp TTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCC
T ss_pred CCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCC
Confidence 3688899998888777666665 6889999999888 55432 444455788999999999988765544443 667
Q ss_pred CCCEeeccCCC--CCCC-CchhhcCCCCccEEEeecCCCCCCChhhhhcCcCCCEEEecCCC------------------
Q 038019 138 ELTVLAFGTNN--FSGA-LPPELGNLAKLEQLYIDSCGAGGEIPSTFAKLRNMQTLWASDNP------------------ 196 (866)
Q Consensus 138 ~L~~L~Ls~N~--l~~~-~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~------------------ 196 (866)
+|++|+|++|. ++.. ++..+..+++|++|+|++|...+.++..+..+++|++|+++.+.
T Consensus 185 ~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~ 264 (594)
T 2p1m_B 185 SLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGC 264 (594)
T ss_dssp CCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTC
T ss_pred cCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcC
Confidence 89999998886 2211 11123456888888888873322356666667777777654431
Q ss_pred --------CCC----CCcccccCCCCCCeEEccCCCCCCCC-chhhcCCCCCCEEEccCccCCCCCch-hhhcCCCCCce
Q 038019 197 --------FTG----KIPDFIGNWTKLKSLRFQGNSFQGPI-PSSLSKLASLESLQMSDIYNVSSSLD-FVMSLKNLTDL 262 (866)
Q Consensus 197 --------l~~----~~p~~l~~l~~L~~L~L~~N~l~~~~-p~~~~~l~~L~~L~l~~n~~~~~~~~-~~~~l~~L~~L 262 (866)
+.. .++..+..+++|++|+|++|.+++.. ...+.++++|+.|++++| +...... ....+++|+.|
T Consensus 265 ~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L 343 (594)
T 2p1m_B 265 KELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLREL 343 (594)
T ss_dssp TTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEE
T ss_pred CCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEE
Confidence 111 13333335677888888888765432 223557777888877765 2211122 22346677777
Q ss_pred eccC---------cccccCCCccc-CCCCCcCEEeeecCcCcccCCcccC-CCCCCcEEECc
Q 038019 263 SLRN---------ALITGTIPFGI-GELQMLQILDLSFNNLTGQIPATLF-NIDSLEYLFLG 313 (866)
Q Consensus 263 ~L~~---------n~l~~~~p~~~-~~l~~L~~L~Ls~N~l~~~~p~~l~-~l~~L~~L~L~ 313 (866)
+|.+ +.+++.....+ ..+++|+.|.+..|.+++.....+. .+++|+.|+|+
T Consensus 344 ~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~ 405 (594)
T 2p1m_B 344 RVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLC 405 (594)
T ss_dssp EEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEE
T ss_pred EEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEee
Confidence 6632 33333221122 2256666666666666654444443 35666666666
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.67 E-value=9.2e-17 Score=169.01 Aligned_cols=168 Identities=20% Similarity=0.261 Sum_probs=89.0
Q ss_pred eEEEEEEcccCcCCCCCcccCCCCCCCEEEccCCCCCCCCCccccCCCCcCEEeccCCcCCCCCCccccCCCCCCEeecc
Q 038019 66 HITKLRVYGLNKKGVIPEELVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKELTVLAFG 145 (866)
Q Consensus 66 ~v~~L~l~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls 145 (866)
+++.+++.++.++... .+..+++|++|++++|.++. ++ .+..+++|++|+|++|++++..+ +.++++|++|+|+
T Consensus 20 ~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~ 93 (263)
T 1xeu_A 20 NAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVN 93 (263)
T ss_dssp HHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECC
T ss_pred HHHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECC
Confidence 3444445555554332 35556666666666666652 33 45566666666666666654333 5666666666666
Q ss_pred CCCCCCCCchhhcCCCCccEEEeecCCCCCCChhhhhcCcCCCEEEecCCCCCCCCcccccCCCCCCeEEccCCCCCCCC
Q 038019 146 TNNFSGALPPELGNLAKLEQLYIDSCGAGGEIPSTFAKLRNMQTLWASDNPFTGKIPDFIGNWTKLKSLRFQGNSFQGPI 225 (866)
Q Consensus 146 ~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~ 225 (866)
+|++++. |. +.. ++|++|+|++|++++. ..+..+++|+.|+|++|++++. + .+..+++|+.|+|++|++++.
T Consensus 94 ~N~l~~l-~~-~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~- 165 (263)
T 1xeu_A 94 RNRLKNL-NG-IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT- 165 (263)
T ss_dssp SSCCSCC-TT-CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC-
T ss_pred CCccCCc-Cc-ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch-
Confidence 6666542 22 222 5555555555555542 2355555555555555555532 2 344555555555555555433
Q ss_pred chhhcCCCCCCEEEccCccCCCCCchhhhcCCCCCceeccCcccccC
Q 038019 226 PSSLSKLASLESLQMSDIYNVSSSLDFVMSLKNLTDLSLRNALITGT 272 (866)
Q Consensus 226 p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 272 (866)
..+..+++|+.|++++|.+++.
T Consensus 166 -------------------------~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 166 -------------------------GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp -------------------------TTSTTCCCCCEEEEEEEEEECC
T ss_pred -------------------------HHhccCCCCCEEeCCCCcccCC
Confidence 3344555666666666666544
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=1.7e-19 Score=210.24 Aligned_cols=202 Identities=18% Similarity=0.131 Sum_probs=133.4
Q ss_pred cCCCCcCEEeccCCcCCCCCCccccCCCCCCEeeccCCCCCCCCchhhcCCCCccEEEeecCCCCCCChhhhhcCcCCCE
Q 038019 110 GNLSRLMFLSFSHNDFSGPVPRELGNLKELTVLAFGTNNFSGALPPELGNLAKLEQLYIDSCGAGGEIPSTFAKLRNMQT 189 (866)
Q Consensus 110 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 189 (866)
..+++|+.|+|++|+++ .+|.++++|++|+.|++++|.....+|.. +..+...+..|..++.+++|+.
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~l-----------l~~~~~~~~~~~~l~~l~~L~~ 413 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILL-----------MRALDPLLYEKETLQYFSTLKA 413 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHH-----------HHHHCTGGGHHHHHHHHHHHHH
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHH-----------HHhcccccCCHHHHHHHHhccc
Confidence 45566666666666665 56666666666666666544310000000 0112244555666666666666
Q ss_pred EE-ecCCCCCCCCcccccCCCCCCeEEccCCCCCCCCchhhcCCCCCCEEEccCccCCCCCchhhhcCCCCCceeccCcc
Q 038019 190 LW-ASDNPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLESLQMSDIYNVSSSLDFVMSLKNLTDLSLRNAL 268 (866)
Q Consensus 190 L~-L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~ 268 (866)
|+ ++.|.+ .+|..+.+.+|.+....+ ..|+.|+|++|.+...+ .+..+++|+.|+|++|.
T Consensus 414 L~~l~~n~~-----------~~L~~l~l~~n~i~~l~~------~~L~~L~Ls~n~l~~lp--~~~~l~~L~~L~Ls~N~ 474 (567)
T 1dce_A 414 VDPMRAAYL-----------DDLRSKFLLENSVLKMEY------ADVRVLHLAHKDLTVLC--HLEQLLLVTHLDLSHNR 474 (567)
T ss_dssp HCGGGHHHH-----------HHHHHHHHHHHHHHHHHH------TTCSEEECTTSCCSSCC--CGGGGTTCCEEECCSSC
T ss_pred Ccchhhccc-----------chhhhhhhhcccccccCc------cCceEEEecCCCCCCCc--CccccccCcEeecCccc
Confidence 65 444422 233344444444432111 13555666665554432 26667778888888888
Q ss_pred cccCCCcccCCCCCcCEEeeecCcCcccCCcccCCCCCCcEEECcCCCCcccC-Cccc--CCCCCEEEeeCCCCCCccCc
Q 038019 269 ITGTIPFGIGELQMLQILDLSFNNLTGQIPATLFNIDSLEYLFLGNNSLSGTL-PDQK--SENLQKIDLSHNHLSGTFPL 345 (866)
Q Consensus 269 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~~-p~~~--~~~L~~L~Ls~N~l~g~~p~ 345 (866)
++ .+|..++.+++|+.|+|++|.|++ +| .+..+++|+.|+|++|++++.. |... +++|+.|+|++|++++..|.
T Consensus 475 l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~ 551 (567)
T 1dce_A 475 LR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGI 551 (567)
T ss_dssp CC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSC
T ss_pred cc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccH
Confidence 88 778899999999999999999997 66 8999999999999999999886 6654 58999999999999987664
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.66 E-value=9.9e-17 Score=168.76 Aligned_cols=149 Identities=20% Similarity=0.232 Sum_probs=62.3
Q ss_pred ccCCCCCCEeeccCCCCCCCCchhhcCCCCccEEEeecCCCCCCChhhhhcCcCCCEEEecCCCCCCCCcccccCCCCCC
Q 038019 133 LGNLKELTVLAFGTNNFSGALPPELGNLAKLEQLYIDSCGAGGEIPSTFAKLRNMQTLWASDNPFTGKIPDFIGNWTKLK 212 (866)
Q Consensus 133 l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~ 212 (866)
+..+++|++|++++|.++. ++ .+..+++|++|+|++|++++..+ +..+++|++|+|++|++++ +|.. .. ++|+
T Consensus 37 ~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~-l~~~-~~-~~L~ 109 (263)
T 1xeu_A 37 QKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKN-LNGI-PS-ACLS 109 (263)
T ss_dssp HHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSC-CTTC-CC-SSCC
T ss_pred hhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccCC-cCcc-cc-Cccc
Confidence 3334444444444444432 22 34444444444444444443322 4444445555555554443 2221 11 4555
Q ss_pred eEEccCCCCCCCCchhhcCCCCCCEEEccCccCCCCCchhhhcCCCCCceeccCcccccCCCcccCCCCCcCEEeeecCc
Q 038019 213 SLRFQGNSFQGPIPSSLSKLASLESLQMSDIYNVSSSLDFVMSLKNLTDLSLRNALITGTIPFGIGELQMLQILDLSFNN 292 (866)
Q Consensus 213 ~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~ 292 (866)
.|+|++|++++. ..+..+++|+.|++++|.+... +.+..+++|+.|+|++|.+++. ..+..+++|+.|++++|.
T Consensus 110 ~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~--~~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 110 RLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI--VMLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQK 183 (263)
T ss_dssp EEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC--GGGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEE
T ss_pred EEEccCCccCCC--hhhcCcccccEEECCCCcCCCC--hHHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCc
Confidence 555555555532 2344444444444444433221 1233344444444444444433 233344444444444444
Q ss_pred Cc
Q 038019 293 LT 294 (866)
Q Consensus 293 l~ 294 (866)
++
T Consensus 184 ~~ 185 (263)
T 1xeu_A 184 CV 185 (263)
T ss_dssp EE
T ss_pred cc
Confidence 33
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
Probab=99.66 E-value=3.1e-16 Score=156.66 Aligned_cols=132 Identities=21% Similarity=0.314 Sum_probs=96.6
Q ss_pred eEEEEEEcccCcCCCCCcccCCCCCCCEEEccCCCCCCCCCc-cccCCCCcCEEeccCCcCCCCCCccccCCCCCCEeec
Q 038019 66 HITKLRVYGLNKKGVIPEELVTLQYLTVLKIDQNFFTGPLPS-FIGNLSRLMFLSFSHNDFSGPVPRELGNLKELTVLAF 144 (866)
Q Consensus 66 ~v~~L~l~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~-~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 144 (866)
..+.|++++++++ .+|..+.. +|++|+|++|+|++..+. .|.++++|++|+|++|+|++..|..|.++++|++|+|
T Consensus 9 ~~~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 85 (192)
T 1w8a_A 9 EGTTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQL 85 (192)
T ss_dssp ETTEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CCCEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEEC
Confidence 3457778887774 56665543 788888888888766554 4778888888888888888777778888888888888
Q ss_pred cCCCCCCCCchhhcCCCCccEEEeecCCCCCCChhhhhcCcCCCEEEecCCCCCCC
Q 038019 145 GTNNFSGALPPELGNLAKLEQLYIDSCGAGGEIPSTFAKLRNMQTLWASDNPFTGK 200 (866)
Q Consensus 145 s~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ 200 (866)
++|++++..+..|.++++|++|+|++|++++..|..|..+++|++|+|++|.+++.
T Consensus 86 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 141 (192)
T 1w8a_A 86 GENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN 141 (192)
T ss_dssp CSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred CCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence 88888777776677777777777777777776666666666666666666666644
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=99.65 E-value=2.6e-17 Score=197.85 Aligned_cols=160 Identities=20% Similarity=0.261 Sum_probs=125.2
Q ss_pred eEEEEEEcccCcCC---------CCCcccCCCCCCCEEEccCCCCCCCCCccccCCCCcCEEeccCCcCCCCCCccccCC
Q 038019 66 HITKLRVYGLNKKG---------VIPEELVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNL 136 (866)
Q Consensus 66 ~v~~L~l~~~~l~~---------~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l 136 (866)
.+..++|+.+.+.+ ..+..|..+..|+.|+|++|.+. .+|..+.++++|++|+|++|.|+ .+|..|++|
T Consensus 192 ~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l 269 (727)
T 4b8c_D 192 LLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNL 269 (727)
T ss_dssp ------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGG
T ss_pred HhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCC
Confidence 44556666655543 34778999999999999999998 67878889999999999999999 899999999
Q ss_pred CCCCEeeccCCCCCCCCchhhcCCCCccEEEeecCCCCCCChhhhhcCcCCCEEEecCCCCCCCCcccccCCCC-CCeEE
Q 038019 137 KELTVLAFGTNNFSGALPPELGNLAKLEQLYIDSCGAGGEIPSTFAKLRNMQTLWASDNPFTGKIPDFIGNWTK-LKSLR 215 (866)
Q Consensus 137 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~-L~~L~ 215 (866)
++|++|+|++|.|+ .+|..|++|++|++|+|++|.++ .+|..|++|++|++|+|++|.+++.+|..+..+.. +..|+
T Consensus 270 ~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~ 347 (727)
T 4b8c_D 270 SNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFY 347 (727)
T ss_dssp TTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHH
T ss_pred CCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHh
Confidence 99999999999999 77999999999999999999997 67888999999999999999999999988865432 23578
Q ss_pred ccCCCCCCCCchhh
Q 038019 216 FQGNSFQGPIPSSL 229 (866)
Q Consensus 216 L~~N~l~~~~p~~~ 229 (866)
|++|.+++.+|..+
T Consensus 348 l~~N~l~~~~p~~l 361 (727)
T 4b8c_D 348 LRDNRPEIPLPHER 361 (727)
T ss_dssp HHHCCCCCCCCCC-
T ss_pred hccCcccCcCcccc
Confidence 99999998887543
|
| >3fpq_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase, ATP-BIND kinase, nucleotide-binding, phosphoprotein; 1.80A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.65 E-value=8.9e-17 Score=170.27 Aligned_cols=130 Identities=15% Similarity=0.186 Sum_probs=87.5
Q ss_pred hhccCCCCCcccCH-HHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcC
Q 038019 635 VLVGIGSKPNIFGY-AELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGR 713 (866)
Q Consensus 635 ~~~~~~~~~~~~~~-~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~ 713 (866)
++|+..+..|++.. .+...++.|||+++..... . .+..+||+.|||||.+. ++++.++|||||||+||||+||+
T Consensus 152 IiHRDlKp~NILl~~~~g~vKl~DFGla~~~~~~-~---~~~~~GTp~YmAPE~~~-~~y~~~~DiwSlGvilyelltg~ 226 (290)
T 3fpq_A 152 IIHRDLKCDNIFITGPTGSVKIGDLGLATLKRAS-F---AKAVIGTPEFMAPEMYE-EKYDESVDVYAFGMCMLEMATSE 226 (290)
T ss_dssp CCCCCCCGGGEEESSTTSCEEECCTTGGGGCCTT-S---BEESCSSCCCCCGGGGG-TCCCTHHHHHHHHHHHHHHHHSS
T ss_pred EEecccChhheeEECCCCCEEEEeCcCCEeCCCC-c---cCCcccCccccCHHHcC-CCCCcHHHHHHHHHHHHHHHHCC
Confidence 34444444477765 3567899999999865432 2 34568999999999875 57999999999999999999999
Q ss_pred CCCCCCchhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 714 ASSDKSLDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 714 ~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
.||....... .+ ......+.. .+........+ +.++..+|++.||++|||+.|+++
T Consensus 227 ~Pf~~~~~~~--~~----~~~i~~~~~----~~~~~~~~~~~---~~~li~~~L~~dP~~R~s~~e~l~ 282 (290)
T 3fpq_A 227 YPYSECQNAA--QI----YRRVTSGVK----PASFDKVAIPE---VKEIIEGCIRQNKDERYSIKDLLN 282 (290)
T ss_dssp CTTTTCSSHH--HH----HHHHTTTCC----CGGGGGCCCHH---HHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred CCCCCCCcHH--HH----HHHHHcCCC----CCCCCccCCHH---HHHHHHHHccCChhHCcCHHHHhc
Confidence 9996433211 11 122222111 11111112223 445666999999999999999864
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=99.65 E-value=9.4e-18 Score=198.43 Aligned_cols=295 Identities=16% Similarity=0.106 Sum_probs=192.3
Q ss_pred eeEEEEEEccc-CcCCC-CCcccCCCCCCCEEEccCCCCCCCCCcccc----CCCCcCEEeccCCc--CCCC-CCccccC
Q 038019 65 CHITKLRVYGL-NKKGV-IPEELVTLQYLTVLKIDQNFFTGPLPSFIG----NLSRLMFLSFSHND--FSGP-VPRELGN 135 (866)
Q Consensus 65 ~~v~~L~l~~~-~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~----~l~~L~~L~Ls~N~--l~~~-~p~~l~~ 135 (866)
.++++|++.+| .++.. ++..+.++++|++|+|++|.+++..+..+. .+++|++|+|++|. ++.. ++..+.+
T Consensus 130 ~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~ 209 (594)
T 2p1m_B 130 KNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTR 209 (594)
T ss_dssp TTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHH
T ss_pred CCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHh
Confidence 47888888887 44432 444445788888888888887665444333 56688888888776 2110 1111234
Q ss_pred CCCCCEeeccCCC--------------------------------------------------CCCC----CchhhcCCC
Q 038019 136 LKELTVLAFGTNN--------------------------------------------------FSGA----LPPELGNLA 161 (866)
Q Consensus 136 l~~L~~L~Ls~N~--------------------------------------------------l~~~----~p~~l~~l~ 161 (866)
+++|++|+|++|. +... ++..+..++
T Consensus 210 ~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~ 289 (594)
T 2p1m_B 210 CPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCS 289 (594)
T ss_dssp CTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHT
T ss_pred CCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhC
Confidence 5777777777651 1111 222233578
Q ss_pred CccEEEeecCCCCCCC-hhhhhcCcCCCEEEecCCCCCCC-CcccccCCCCCCeEEccC---------CCCCCCCchhhc
Q 038019 162 KLEQLYIDSCGAGGEI-PSTFAKLRNMQTLWASDNPFTGK-IPDFIGNWTKLKSLRFQG---------NSFQGPIPSSLS 230 (866)
Q Consensus 162 ~L~~L~L~~n~l~~~~-p~~~~~l~~L~~L~L~~N~l~~~-~p~~l~~l~~L~~L~L~~---------N~l~~~~p~~~~ 230 (866)
+|++|+|++|.++... ...+..+++|++|++++| ++.. ++.....+++|+.|+|.. +.+++.....+.
T Consensus 290 ~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~ 368 (594)
T 2p1m_B 290 RLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVS 368 (594)
T ss_dssp TCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHH
T ss_pred CCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHH
Confidence 9999999999976543 333668999999999988 4322 233334588999999843 445433223333
Q ss_pred -CCCCCCEEEccCccCCCCCchhhh-cCCCCCceecc--C----cccccC-----CCcccCCCCCcCEEeeecCcCcccC
Q 038019 231 -KLASLESLQMSDIYNVSSSLDFVM-SLKNLTDLSLR--N----ALITGT-----IPFGIGELQMLQILDLSFNNLTGQI 297 (866)
Q Consensus 231 -~l~~L~~L~l~~n~~~~~~~~~~~-~l~~L~~L~L~--~----n~l~~~-----~p~~~~~l~~L~~L~Ls~N~l~~~~ 297 (866)
.+++|+.|.+..+.+.......+. .+++|+.|+|+ + +.+++. ++..+..+++|+.|+|++ .+++..
T Consensus 369 ~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~ 447 (594)
T 2p1m_B 369 MGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKV 447 (594)
T ss_dssp HHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHH
T ss_pred HhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHH
Confidence 488999998877776654444444 58999999998 3 455522 122356778999999977 676665
Q ss_pred CcccCC-CCCCcEEECcCCCCcccCCcc---cCCCCCEEEeeCCCCCCccCccc----cccccccccccccc
Q 038019 298 PATLFN-IDSLEYLFLGNNSLSGTLPDQ---KSENLQKIDLSHNHLSGTFPLWV----NSELQMNLAVNNFK 361 (866)
Q Consensus 298 p~~l~~-l~~L~~L~L~~N~l~g~~p~~---~~~~L~~L~Ls~N~l~g~~p~~~----~~~~~l~l~~N~~~ 361 (866)
+..+.. +++|+.|+|++|.+++..+.. .+++|+.|+|++|++++..+..+ .....|++++|.++
T Consensus 448 ~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 519 (594)
T 2p1m_B 448 FEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVS 519 (594)
T ss_dssp HHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCB
T ss_pred HHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCC
Confidence 555655 889999999999987543332 25789999999999965443322 22234888888874
|
| >4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=5.3e-17 Score=175.63 Aligned_cols=131 Identities=17% Similarity=0.222 Sum_probs=92.9
Q ss_pred hhccCCCCCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCC
Q 038019 635 VLVGIGSKPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRA 714 (866)
Q Consensus 635 ~~~~~~~~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~ 714 (866)
++|++.+..|++...+...|+.|||+++.+.... ......+||+.|||||.+....|+.++||||+||+++||+||+.
T Consensus 191 IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~~--~~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~ 268 (346)
T 4fih_A 191 VIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEV--PRRKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEP 268 (346)
T ss_dssp EECCCCSGGGEEECTTCCEEECCCTTCEECCSSS--CCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSC
T ss_pred cccccCCHHHEEECCCCCEEEecCcCceecCCCC--CcccccccCcCcCCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCC
Confidence 3344344447887777788999999999886543 23345689999999999999999999999999999999999999
Q ss_pred CCCCCchhhhhcHHHHHHHHhhcCCcccccCCccc--ccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 715 SSDKSLDMEKIYLLEWAWNLHENNQSFGLVDPTLT--EFNDKEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 715 p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~--~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
||......+ +...+.. + ..+.+. ....++ +.++..+|++.||++|||+.|+++
T Consensus 269 PF~~~~~~~---~~~~i~~----~-----~~~~~~~~~~~s~~---~~dli~~~L~~dP~~R~ta~e~l~ 323 (346)
T 4fih_A 269 PYFNEPPLK---AMKMIRD----N-----LPPRLKNLHKVSPS---LKGFLDRLLVRDPAQRATAAELLK 323 (346)
T ss_dssp TTTTSCHHH---HHHHHHH----S-----SCCCCSCGGGSCHH---HHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred CCCCcCHHH---HHHHHHc----C-----CCCCCCccccCCHH---HHHHHHHHcCCChhHCcCHHHHhc
Confidence 997543322 2222211 1 122221 111223 344556999999999999999864
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
Probab=99.64 E-value=5.8e-16 Score=154.70 Aligned_cols=132 Identities=19% Similarity=0.242 Sum_probs=110.1
Q ss_pred CEEEccCCCCCCCCCccccCCCCcCEEeccCCcCCCCCCc-cccCCCCCCEeeccCCCCCCCCchhhcCCCCccEEEeec
Q 038019 92 TVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPR-ELGNLKELTVLAFGTNNFSGALPPELGNLAKLEQLYIDS 170 (866)
Q Consensus 92 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~-~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~ 170 (866)
++|++++|.++ .+|..+.. +|++|+|++|+|++..+. .|+.+++|++|+|++|++++..|..|.++++|++|+|++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 78899999986 57765543 889999999999876664 488899999999999999888888888888999999988
Q ss_pred CCCCCCChhhhhcCcCCCEEEecCCCCCCCCcccccCCCCCCeEEccCCCCCCCCc
Q 038019 171 CGAGGEIPSTFAKLRNMQTLWASDNPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIP 226 (866)
Q Consensus 171 n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p 226 (866)
|++++..+..|.++++|++|+|++|++++..|..+..+++|++|+|++|.+.+..+
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 88888888888888888888888888888888888888888888888888876543
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
Probab=99.63 E-value=6.5e-16 Score=150.71 Aligned_cols=132 Identities=18% Similarity=0.144 Sum_probs=83.6
Q ss_pred CCCCEEEccCCCCC-CCCCccccCCCCcCEEeccCCcCCCCCCccccCCCCCCEeeccCCCCCCCCchhhcCCCCccEEE
Q 038019 89 QYLTVLKIDQNFFT-GPLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKELTVLAFGTNNFSGALPPELGNLAKLEQLY 167 (866)
Q Consensus 89 ~~L~~L~Ls~n~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 167 (866)
++|++|+|++|.++ +.+|..+..+++|++|+|++|.+++. ..+..+++|++|+|++|.+++.+|..+..+++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 56677777777766 55666666677777777777776644 5566666667777666666665666666666666666
Q ss_pred eecCCCCCCC-hhhhhcCcCCCEEEecCCCCCCCCc---ccccCCCCCCeEEccCCCCC
Q 038019 168 IDSCGAGGEI-PSTFAKLRNMQTLWASDNPFTGKIP---DFIGNWTKLKSLRFQGNSFQ 222 (866)
Q Consensus 168 L~~n~l~~~~-p~~~~~l~~L~~L~L~~N~l~~~~p---~~l~~l~~L~~L~L~~N~l~ 222 (866)
|++|.+++.. +..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 6666665532 2556666666666666666664433 35556666666666666554
|
| >4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=8.7e-18 Score=182.06 Aligned_cols=131 Identities=16% Similarity=0.215 Sum_probs=92.7
Q ss_pred hhccCCCCCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCC
Q 038019 635 VLVGIGSKPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRA 714 (866)
Q Consensus 635 ~~~~~~~~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~ 714 (866)
++|+..+..|++..++...++.|||+++.+..+. ...+..+||+.|||||.+.+..|+.++||||+||+||||+||+.
T Consensus 146 IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~~--~~~~~~~GT~~YmAPE~l~~~~y~~~~DiwSlGvilyemltG~~ 223 (350)
T 4b9d_A 146 ILHRDIKSQNIFLTKDGTVQLGDFGIARVLNSTV--ELARACIGTPYYLSPEICENKPYNNKSDIWALGCVLYELCTLKH 223 (350)
T ss_dssp CEETTCCGGGEEECTTCCEEECSTTEESCCCHHH--HHHHHHHSCCTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSC
T ss_pred eeeccCCHHHEEECCCCCEEEcccccceeecCCc--ccccccCCCccccCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCC
Confidence 3444444448888777788999999999886432 22234579999999999999999999999999999999999999
Q ss_pred CCCCCchhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 715 SSDKSLDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 715 p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
||......+ +. ..... +.. |.+.....++ +.++..+|++.||++|||+.|+++
T Consensus 224 PF~~~~~~~---~~---~~i~~-~~~-----~~~~~~~s~~---~~~li~~~L~~dP~~R~s~~e~l~ 276 (350)
T 4b9d_A 224 AFEAGSMKN---LV---LKIIS-GSF-----PPVSLHYSYD---LRSLVSQLFKRNPRDRPSVNSILE 276 (350)
T ss_dssp SCCCSSHHH---HH---HHHHH-TCC-----CCCCTTSCHH---HHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred CCCCcCHHH---HH---HHHHc-CCC-----CCCCccCCHH---HHHHHHHHccCChhHCcCHHHHhc
Confidence 997543221 22 12111 111 1111111223 445566999999999999999975
|
| >3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3ulz_A* 3tl8_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=9.9e-17 Score=174.54 Aligned_cols=147 Identities=37% Similarity=0.584 Sum_probs=119.4
Q ss_pred CCCCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCC
Q 038019 640 GSKPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKS 719 (866)
Q Consensus 640 ~~~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~ 719 (866)
....|++...+...++.|||.+..+..... .......||++|+|||.+..+.++.++|||||||+++||+||+.|++..
T Consensus 160 lkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~ 238 (326)
T 3uim_A 160 VKAANILLDEEFEAVVGDFGLAKLMDYKDT-HVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLA 238 (326)
T ss_dssp CSGGGEEECTTCCEEECCCSSCEECCSSSS-CEECCCCSCGGGCCHHHHHHSEECHHHHHHHHHHHHHHHHHCCCSBCHH
T ss_pred CchhhEEECCCCCEEeccCccccccCcccc-cccccccCCcCccCHHHhccCCCCccccchhHHHHHHHHHhCCCccccc
Confidence 333477777777788999999988765432 3444556999999999999999999999999999999999999998632
Q ss_pred c--hhhhhcHHHHHHHHhhcCCcccccCCcc-cccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhcC
Q 038019 720 L--DMEKIYLLEWAWNLHENNQSFGLVDPTL-TEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLAGD 787 (866)
Q Consensus 720 ~--~~~~~~l~~~~~~~~~~~~~~~~~d~~l-~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~~~ 787 (866)
. ......+.+|+...........++++.+ .....+....+.+++..|++.+|++||||.||+++|++.
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~ell~~L~~~ 309 (326)
T 3uim_A 239 RLANDDDVMLLDWVKGLLKEKKLEALVDVDLQGNYKDEEVEQLIQVALLCTQSSPMERPKMSEVVRMLEGD 309 (326)
T ss_dssp HHTTTSCSBHHHHHTTTTSSCCSTTSSCTTCTTSCCHHHHHHHHHHHHHHTCSCGGGSCCHHHHHHHHHTS
T ss_pred ccccccchhHHHHHHHHhhchhhhhhcChhhccccCHHHHHHHHHHHHHHhCcCCccCCCHHHHHHHhcCc
Confidence 1 1234567888888777777777888777 356777888899999999999999999999999999964
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
Probab=99.62 E-value=6.2e-16 Score=147.61 Aligned_cols=125 Identities=18% Similarity=0.166 Sum_probs=54.6
Q ss_pred cCEEeccCCcCC-CCCCccccCCCCCCEeeccCCCCCCCCchhhcCCCCccEEEeecCCCCCCChhhhhcCcCCCEEEec
Q 038019 115 LMFLSFSHNDFS-GPVPRELGNLKELTVLAFGTNNFSGALPPELGNLAKLEQLYIDSCGAGGEIPSTFAKLRNMQTLWAS 193 (866)
Q Consensus 115 L~~L~Ls~N~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~ 193 (866)
|++|++++|.++ +.+|..+..+++|++|+|++|.+++. ..++.+++|++|+|++|.+++.+|..+..+++|++|+++
T Consensus 19 l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls 96 (149)
T 2je0_A 19 VKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLS 96 (149)
T ss_dssp CSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECT
T ss_pred CeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECC
Confidence 333333333333 33333333334444444444443332 333444444444444444444444444444444444444
Q ss_pred CCCCCCC-CcccccCCCCCCeEEccCCCCCCCCc---hhhcCCCCCCEEEcc
Q 038019 194 DNPFTGK-IPDFIGNWTKLKSLRFQGNSFQGPIP---SSLSKLASLESLQMS 241 (866)
Q Consensus 194 ~N~l~~~-~p~~l~~l~~L~~L~L~~N~l~~~~p---~~~~~l~~L~~L~l~ 241 (866)
+|.+++. .+..+..+++|++|++++|.+++..+ ..+..+++|+.|+++
T Consensus 97 ~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 97 GNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp TSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 4444432 22444455555555555555544333 344555555555443
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
Probab=99.61 E-value=2.5e-15 Score=146.55 Aligned_cols=134 Identities=19% Similarity=0.133 Sum_probs=114.9
Q ss_pred CCCCcCEEeccCCcCC-CCCCccccCCCCCCEeeccCCCCCCCCchhhcCCCCccEEEeecCCCCCCChhhhhcCcCCCE
Q 038019 111 NLSRLMFLSFSHNDFS-GPVPRELGNLKELTVLAFGTNNFSGALPPELGNLAKLEQLYIDSCGAGGEIPSTFAKLRNMQT 189 (866)
Q Consensus 111 ~l~~L~~L~Ls~N~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 189 (866)
..++|++|+|++|.++ +.+|..+..+++|++|+|++|.+++. ..+..+++|++|+|++|++++.+|..+..+++|++
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 99 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH 99 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence 3478999999999998 78898899999999999999999876 78899999999999999999888888888999999
Q ss_pred EEecCCCCCCCC-cccccCCCCCCeEEccCCCCCCCCc---hhhcCCCCCCEEEccCccCC
Q 038019 190 LWASDNPFTGKI-PDFIGNWTKLKSLRFQGNSFQGPIP---SSLSKLASLESLQMSDIYNV 246 (866)
Q Consensus 190 L~L~~N~l~~~~-p~~l~~l~~L~~L~L~~N~l~~~~p---~~~~~l~~L~~L~l~~n~~~ 246 (866)
|+|++|.+++.. +..+..+++|++|++++|.+++..+ ..+..+++|+.|++++|...
T Consensus 100 L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 100 LNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp EECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred EeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 999999998642 2788889999999999999986655 46777777877777776553
|
| >4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.9e-16 Score=175.58 Aligned_cols=131 Identities=17% Similarity=0.222 Sum_probs=93.4
Q ss_pred hhccCCCCCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCC
Q 038019 635 VLVGIGSKPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRA 714 (866)
Q Consensus 635 ~~~~~~~~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~ 714 (866)
++|++....|++...+...++.|||+++.+.... ......+||+.|||||.+....|+.++||||+||+++||+||+.
T Consensus 268 IiHRDiKp~NILl~~~g~vKl~DFGla~~~~~~~--~~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~ 345 (423)
T 4fie_A 268 VIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEV--PRRKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEP 345 (423)
T ss_dssp EECCCCSTTTEEECTTCCEEECCCTTCEECCSSC--CCBCCCEECTTTCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSC
T ss_pred eecccCCHHHEEEcCCCCEEEecCccceECCCCC--ccccccccCcCcCCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCC
Confidence 3444444458888888888999999999886543 22345679999999999999999999999999999999999999
Q ss_pred CCCCCchhhhhcHHHHHHHHhhcCCcccccCCccc--ccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 715 SSDKSLDMEKIYLLEWAWNLHENNQSFGLVDPTLT--EFNDKEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 715 p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~--~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
||......+ +...+. .+ ..+.+. ....++ +.++..+|++.||++|||+.|+++
T Consensus 346 PF~~~~~~~---~~~~i~----~~-----~~~~~~~~~~~s~~---~~dli~~~L~~dP~~R~ta~ell~ 400 (423)
T 4fie_A 346 PYFNEPPLK---AMKMIR----DN-----LPPRLKNLHKVSPS---LKGFLDRLLVRDPAQRATAAELLK 400 (423)
T ss_dssp TTTTSCHHH---HHHHHH----HS-----CCCCCSCTTSSCHH---HHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred CCCCcCHHH---HHHHHH----cC-----CCCCCcccccCCHH---HHHHHHHHcCCChhHCcCHHHHhc
Confidence 997543322 222221 11 112221 111223 344556999999999999999865
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
Probab=99.61 E-value=1.5e-15 Score=144.95 Aligned_cols=129 Identities=19% Similarity=0.177 Sum_probs=116.9
Q ss_pred CCCCCEEEccCCCCC-CCCCccccCCCCcCEEeccCCcCCCCCCccccCCCCCCEeeccCCCCCCCCchhhcCCCCccEE
Q 038019 88 LQYLTVLKIDQNFFT-GPLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKELTVLAFGTNNFSGALPPELGNLAKLEQL 166 (866)
Q Consensus 88 l~~L~~L~Ls~n~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 166 (866)
.++|+.|++++|.++ +.+|..+..+++|++|+|++|.+++. ..++.+++|++|+|++|.+++.+|..+..+++|++|
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 468999999999998 78898899999999999999999876 789999999999999999998889888899999999
Q ss_pred EeecCCCCCC-ChhhhhcCcCCCEEEecCCCCCCCCc---ccccCCCCCCeEEccC
Q 038019 167 YIDSCGAGGE-IPSTFAKLRNMQTLWASDNPFTGKIP---DFIGNWTKLKSLRFQG 218 (866)
Q Consensus 167 ~L~~n~l~~~-~p~~~~~l~~L~~L~L~~N~l~~~~p---~~l~~l~~L~~L~L~~ 218 (866)
+|++|.+++. .+..+..+++|++|++++|.+++..+ ..+..+++|+.|++++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 9999999874 45889999999999999999997665 5789999999999864
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.61 E-value=3.6e-15 Score=148.95 Aligned_cols=127 Identities=24% Similarity=0.325 Sum_probs=86.1
Q ss_pred EEEEEcccCcCCCCCcccCCCCCCCEEEccCCCCCCCCCccccCCCCcCEEeccCCcCCCCCCccccCCCCCCEeeccCC
Q 038019 68 TKLRVYGLNKKGVIPEELVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKELTVLAFGTN 147 (866)
Q Consensus 68 ~~L~l~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N 147 (866)
+.+++++++++ .+|..+. ++|++|+|++|.|+ .+|..|.++++|++|+|++|.|++..+..|.++++|++|+|++|
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 45667777666 3554443 46777777777776 56677777777777777777777666667777777777777777
Q ss_pred CCCCCCchhhcCCCCccEEEeecCCCCCCChhhhhcCcCCCEEEecCCCCC
Q 038019 148 NFSGALPPELGNLAKLEQLYIDSCGAGGEIPSTFAKLRNMQTLWASDNPFT 198 (866)
Q Consensus 148 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~ 198 (866)
.+++..|..|..+++|++|+|++|.++...+..|..+++|+.|+|++|.+.
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 777666666666667777766666666555555666666666666666554
|
| >4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ... | Back alignment and structure |
|---|
Probab=99.60 E-value=1.2e-16 Score=170.24 Aligned_cols=130 Identities=10% Similarity=0.081 Sum_probs=93.1
Q ss_pred hccCCCCCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCC
Q 038019 636 LVGIGSKPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRAS 715 (866)
Q Consensus 636 ~~~~~~~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p 715 (866)
+|+..+..|++..++...++.|||+++.+..++........+||+.|||||.+.+..++.++||||+||+|+||+||+.|
T Consensus 154 iHRDlKPeNILl~~~g~vKl~DFGla~~~~~~~~~~~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~P 233 (311)
T 4aw0_A 154 IHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANSFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPP 233 (311)
T ss_dssp ECSCCSGGGEEECTTSCEEECCCTTCEECCTTTTCCCBCCCCSCGGGCCHHHHHHSCBCHHHHHHHHHHHHHHHHHSSCS
T ss_pred ccCCCCHHHeEEcCCCCEEEEEcCCceecCCCCCcccccCcccCcccCCHHHHcCCCCCcHHHHHHHHHHHHHHHhCCCC
Confidence 33333344788777788899999999998755444444556899999999999999999999999999999999999999
Q ss_pred CCCCchhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHH
Q 038019 716 SDKSLDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVV 781 (866)
Q Consensus 716 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~ 781 (866)
|...... .+...+. .+. +.+.+...++ +.++..+|++.||++|||+.|+.
T Consensus 234 F~~~~~~---~~~~~i~----~~~------~~~p~~~s~~---~~dli~~lL~~dp~~R~t~~e~~ 283 (311)
T 4aw0_A 234 FRAGNEG---LIFAKII----KLE------YDFPEKFFPK---ARDLVEKLLVLDATKRLGCEEME 283 (311)
T ss_dssp SCCSSHH---HHHHHHH----HTC------CCCCTTCCHH---HHHHHHHHSCSSGGGSTTSGGGT
T ss_pred CCCCCHH---HHHHHHH----cCC------CCCCcccCHH---HHHHHHHHccCCHhHCcChHHHc
Confidence 9754322 2222221 111 1121111223 34456699999999999999864
|
| >3hyh_A Carbon catabolite-derepressing protein kinase; kinase domain, transferase, ATP-binding, carbohydrate metabo kinase, membrane; 2.20A {Saccharomyces cerevisiae} PDB: 3dae_A 2fh9_A 3mn3_A | Back alignment and structure |
|---|
Probab=99.60 E-value=4.3e-16 Score=163.55 Aligned_cols=129 Identities=22% Similarity=0.256 Sum_probs=81.5
Q ss_pred hhccCCCCCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCC-CchhHHHHHHHHHHHHHhcC
Q 038019 635 VLVGIGSKPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHL-TEKADVFSFGVVALEIISGR 713 (866)
Q Consensus 635 ~~~~~~~~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~-t~ksDVySfGvvLlEl~tg~ 713 (866)
++|+..+..|++..++...++.|||+++.+..+.. .....||+.|||||.+.+..+ +.++||||+||+++||+||+
T Consensus 133 IiHRDiKP~NILl~~~~~vkl~DFGla~~~~~~~~---~~~~~GT~~Y~APE~~~~~~y~~~~~DiwSlGvily~lltg~ 209 (275)
T 3hyh_A 133 IVHRDLKPENLLLDEHLNVKIADFGLSNIMTDGNF---LKTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYVMLCRR 209 (275)
T ss_dssp CCCCCCCTTTEEECTTCCEEECCSSCC------------------CTTSCHHHHSSSSCCCTHHHHHHHHHHHHHHHHSS
T ss_pred cccccCChHHeEECCCCCEEEeecCCCeecCCCCc---cCCeeECcccCChhhhcCCCCCCChhhhHHHHHHHHHHHHCC
Confidence 34444444588887777889999999998876543 344679999999999987765 58999999999999999999
Q ss_pred CCCCCCchhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 714 ASSDKSLDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 714 ~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
.||...... .+.+. ...+. +.++....++ +.++..+|++.||++|||+.|+++
T Consensus 210 ~PF~~~~~~---~~~~~----i~~~~------~~~p~~~s~~---~~~li~~~L~~dP~~R~s~~eil~ 262 (275)
T 3hyh_A 210 LPFDDESIP---VLFKN----ISNGV------YTLPKFLSPG---AAGLIKRMLIVNPLNRISIHEIMQ 262 (275)
T ss_dssp CSSCCSSHH---HHHHH----HHHTC------CCCCTTSCHH---HHHHHHHHSCSSGGGSCCHHHHHH
T ss_pred CCCCCCCHH---HHHHH----HHcCC------CCCCCCCCHH---HHHHHHHHccCChhHCcCHHHHHc
Confidence 999754321 12211 11121 1111212233 344556999999999999999986
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.59 E-value=8.5e-15 Score=144.08 Aligned_cols=132 Identities=20% Similarity=0.308 Sum_probs=87.6
Q ss_pred EEEEEEcccCcCCCCCcccCCCCCCCEEEccCCCCCCCCCccccCCCCcCEEeccCCcCCCCCCccccCCCCCCEeeccC
Q 038019 67 ITKLRVYGLNKKGVIPEELVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKELTVLAFGT 146 (866)
Q Consensus 67 v~~L~l~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~ 146 (866)
.+.+++.+++++. +|..+ .++|++|+|++|++++..+..|.++++|++|+|++|++++..+..|.++++|++|+|++
T Consensus 9 ~~~l~~~~~~l~~-~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 9 GTEIRCNSKGLTS-VPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TTEEECCSSCCSS-CCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCCCcc-CCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 3455556666553 44333 25778888888887766666677777788888888777766666677777777777777
Q ss_pred CCCCCCCchhhcCCCCccEEEeecCCCCCCChhhhhcCcCCCEEEecCCCCCCCC
Q 038019 147 NNFSGALPPELGNLAKLEQLYIDSCGAGGEIPSTFAKLRNMQTLWASDNPFTGKI 201 (866)
Q Consensus 147 N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~ 201 (866)
|++++..+..+..+++|++|+|++|.+++..+..|..+++|++|+|++|.+++..
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~ 140 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 140 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccC
Confidence 7777665556666677777777766666555555566666666666666665443
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.59 E-value=8.4e-15 Score=146.26 Aligned_cols=128 Identities=23% Similarity=0.290 Sum_probs=107.8
Q ss_pred CEEEccCCCCCCCCCccccCCCCcCEEeccCCcCCCCCCccccCCCCCCEeeccCCCCCCCCchhhcCCCCccEEEeecC
Q 038019 92 TVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKELTVLAFGTNNFSGALPPELGNLAKLEQLYIDSC 171 (866)
Q Consensus 92 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n 171 (866)
+++++++|.++ .+|..+. ++|++|+|++|+|+ .+|..|.++++|++|+|++|.+++..+..|.++++|++|+|++|
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 57899999987 5676553 68999999999998 67788999999999999999999888888889999999999999
Q ss_pred CCCCCChhhhhcCcCCCEEEecCCCCCCCCcccccCCCCCCeEEccCCCCCC
Q 038019 172 GAGGEIPSTFAKLRNMQTLWASDNPFTGKIPDFIGNWTKLKSLRFQGNSFQG 223 (866)
Q Consensus 172 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~ 223 (866)
++++..|..|..+++|++|+|++|+++...+..|..+++|+.|+|++|.+..
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 9888888888888888888888888886666677888888888888887763
|
| >3ubd_A Ribosomal protein S6 kinase alpha-3; kinase-inhibitor complex, induced FIT, transferase-transfera inhibitor complex; HET: SL0; 1.53A {Mus musculus} PDB: 4el9_A* 3g51_A* 2z7q_A* 2z7r_A* 2z7s_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=3.5e-16 Score=166.55 Aligned_cols=124 Identities=20% Similarity=0.187 Sum_probs=84.2
Q ss_pred hccCCCCCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCC
Q 038019 636 LVGIGSKPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRAS 715 (866)
Q Consensus 636 ~~~~~~~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p 715 (866)
+|+.....|++..++...++.|||+++.+.... ......+||+.|||||.+....++.++||||+||+|+||+||+.|
T Consensus 148 iHRDlKp~NILl~~~g~vKl~DFGla~~~~~~~--~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyemltG~~P 225 (304)
T 3ubd_A 148 IYRDLKPENILLDEEGHIKLTDFGLSKESIDHE--KKAYSFCGTVEYMAPEVVNRRGHTQSADWWSFGVLMFEMLTGTLP 225 (304)
T ss_dssp CCSSCCGGGEEECTTSCEEEESSEEEEC-------CCCCSCCCCGGGCCHHHHHTSCCCTHHHHHHHHHHHHHHHHSSCS
T ss_pred cCCCCCHHHeEEcCCCCEEecccccceeccCCC--ccccccccCcccCCHHHhccCCCCCCCcccchHHHHHHHHhCCCC
Confidence 333334447887777788999999998764432 122345799999999999999999999999999999999999999
Q ss_pred CCCCchhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCH
Q 038019 716 SDKSLDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPM 777 (866)
Q Consensus 716 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm 777 (866)
|......+ +...+. .+. +........+ +.++..+|++.||++|||.
T Consensus 226 F~~~~~~~---~~~~i~----~~~------~~~p~~~s~~---~~~li~~~L~~dP~~R~ta 271 (304)
T 3ubd_A 226 FQGKDRKE---TMTMIL----KAK------LGMPQFLSPE---AQSLLRMLFKRNPANRLGA 271 (304)
T ss_dssp SCCSSHHH---HHHHHH----HCC------CCCCTTSCHH---HHHHHHHHTCSSGGGSTTC
T ss_pred CCCcCHHH---HHHHHH----cCC------CCCCCcCCHH---HHHHHHHHcccCHHHCCCC
Confidence 97643322 222111 111 1111112233 4445669999999999984
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.5e-14 Score=142.27 Aligned_cols=133 Identities=20% Similarity=0.242 Sum_probs=110.6
Q ss_pred CCEEEccCCCCCCCCCccccCCCCcCEEeccCCcCCCCCCccccCCCCCCEeeccCCCCCCCCchhhcCCCCccEEEeec
Q 038019 91 LTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKELTVLAFGTNNFSGALPPELGNLAKLEQLYIDS 170 (866)
Q Consensus 91 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~ 170 (866)
.+.+++++|.++ .+|..+ .++|++|+|++|++++..+..|..+++|++|+|++|.+++..+..+..+++|++|+|++
T Consensus 9 ~~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 9 GTEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TTEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 478899999887 455443 36899999999999877777788999999999999999877777788899999999999
Q ss_pred CCCCCCChhhhhcCcCCCEEEecCCCCCCCCcccccCCCCCCeEEccCCCCCCCCc
Q 038019 171 CGAGGEIPSTFAKLRNMQTLWASDNPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIP 226 (866)
Q Consensus 171 n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p 226 (866)
|.+++..+..|..+++|++|+|++|++++..+..+..+++|++|+|++|.+.+..+
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 99988877778888999999999998887666667888888999999888886544
|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.56 E-value=4e-15 Score=162.07 Aligned_cols=120 Identities=15% Similarity=0.089 Sum_probs=59.8
Q ss_pred eeEEEEEEcccCcCCCCCcccCC-CCCCCEEEccCCCCC--CCCCccccCCCCcCEEeccCCcCCCCCCccccC------
Q 038019 65 CHITKLRVYGLNKKGVIPEELVT-LQYLTVLKIDQNFFT--GPLPSFIGNLSRLMFLSFSHNDFSGPVPRELGN------ 135 (866)
Q Consensus 65 ~~v~~L~l~~~~l~~~~p~~l~~-l~~L~~L~Ls~n~l~--~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~------ 135 (866)
.+++.|.+.++ +...--..+.. +++|++|||++|++. ..... .++.++.+.+..|.|. +..|.+
T Consensus 25 ~~l~~L~l~g~-i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~---~~~~~~~~~~~~~~I~---~~aF~~~~~~~~ 97 (329)
T 3sb4_A 25 NSITHLTLTGK-LNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAG---TYPNGKFYIYMANFVP---AYAFSNVVNGVT 97 (329)
T ss_dssp HHCSEEEEEEE-ECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSS---SSGGGCCEEECTTEEC---TTTTEEEETTEE
T ss_pred CceeEEEEecc-ccHHHHHHHHHhhccCeEEecCcceeEEecCccc---cccccccccccccccC---HHHhcccccccc
Confidence 46778887653 21111122333 788999999999887 11111 1122333444433221 233444
Q ss_pred --CCCCCEeeccCCCCCCCCchhhcCCCCccEEEeecCCCCCCChhhhhcCcCCCEEEe
Q 038019 136 --LKELTVLAFGTNNFSGALPPELGNLAKLEQLYIDSCGAGGEIPSTFAKLRNMQTLWA 192 (866)
Q Consensus 136 --l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 192 (866)
+++|+.|+|.+ .++...+.+|.++++|+.|+|.+|.+....+..|.++.++..+.+
T Consensus 98 ~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~ 155 (329)
T 3sb4_A 98 KGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPL 155 (329)
T ss_dssp EECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECT
T ss_pred cccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecC
Confidence 55555555555 444444445555555555555555555444455555444444433
|
| >4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=1.1e-15 Score=163.18 Aligned_cols=131 Identities=18% Similarity=0.211 Sum_probs=79.3
Q ss_pred hhccCCCCCcccCHHHHHHHhcCCccccccCCCCcee----------EEEeecCCCCccCceeeecCCCCchhHHHHHHH
Q 038019 635 VLVGIGSKPNIFGYAELRSATKDFNRSNKLGEGGYGP----------VYKVTANSYGYLAPEYAMRGHLTEKADVFSFGV 704 (866)
Q Consensus 635 ~~~~~~~~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~----------vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGv 704 (866)
++|+..+..|++...+...++.|||+++.+..+.... ...+.+||+.|||||.+.+..++.|+|||||||
T Consensus 139 IiHRDlKp~NILl~~~~~vKl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGv 218 (299)
T 4g31_A 139 LMHRDLKPSNIFFTMDDVVKVGDFGLVTAMDQDEEEQTVLTPMPAYARHTGQVGTKLYMSPEQIHGNSYSHKVDIFSLGL 218 (299)
T ss_dssp CCCCCCCGGGEEECTTCCEEECCCCCC--------------------------CCCTTSCHHHHTTCCCCTHHHHHHHHH
T ss_pred CccccCcHHHeEECCCCcEEEccCccceecCCCccccccccccccccccCCcccCccccCHHHHcCCCCCCHHHHHHHHH
Confidence 3343334447887777788999999999887543211 123457999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCCCchhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 705 VALEIISGRASSDKSLDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 705 vLlEl~tg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
+++||++ |+... .+..... .. ...... |. ...........+..+|++.||++|||+.|+++
T Consensus 219 ilyell~---Pf~~~--~~~~~~~---~~-~~~~~~-----p~---~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~ 279 (299)
T 4g31_A 219 ILFELLY---PFSTQ--MERVRTL---TD-VRNLKF-----PP---LFTQKYPCEYVMVQDMLSPSPMERPEAINIIE 279 (299)
T ss_dssp HHHHHHS---CCSSH--HHHHHHH---HH-HHTTCC-----CH---HHHHHCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred HHHHHcc---CCCCc--cHHHHHH---HH-HhcCCC-----CC---CCcccCHHHHHHHHHHcCCChhHCcCHHHHhc
Confidence 9999996 65421 1111111 11 111111 11 11112223445777999999999999999875
|
| >3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 4g5j_A* 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* ... | Back alignment and structure |
|---|
Probab=99.52 E-value=2.2e-15 Score=164.05 Aligned_cols=138 Identities=16% Similarity=0.157 Sum_probs=97.1
Q ss_pred ccCCCCCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHh-cCCC
Q 038019 637 VGIGSKPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIIS-GRAS 715 (866)
Q Consensus 637 ~~~~~~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~t-g~~p 715 (866)
|......|++...+...++.|||.++.++.........+..||++|+|||++.++.++.++|||||||+++||+| |+.|
T Consensus 140 H~Dikp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p 219 (327)
T 3poz_A 140 HRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKP 219 (327)
T ss_dssp CSCCCGGGEEEEETTEEEECCTTHHHHHTTTCC-------CCCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCT
T ss_pred CCCCChheEEECCCCCEEEccCcceeEccCCcccccccCCCccccccChHHhccCCCCchhhhhhhHHHHHHHHhcCCCC
Confidence 333334477777777889999999998877655455556678899999999999999999999999999999999 9999
Q ss_pred CCCCchhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhcCcC
Q 038019 716 SDKSLDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLAGDIE 789 (866)
Q Consensus 716 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~~~~~ 789 (866)
++.....+ +...+ ..+.. +.. +......+.+++.+||+.+|++||+|.||++.|+....
T Consensus 220 ~~~~~~~~---~~~~~----~~~~~-----~~~---~~~~~~~~~~li~~~l~~~p~~Rps~~ell~~l~~~~~ 278 (327)
T 3poz_A 220 YDGIPASE---ISSIL----EKGER-----LPQ---PPICTIDVYMIMVKCWMIDADSRPKFRELIIEFSKMAR 278 (327)
T ss_dssp TTTCCGGG---HHHHH----HTTCC-----CCC---CTTBCHHHHHHHHHHTCSCGGGSCCHHHHHHHHHHHHT
T ss_pred ccCCCHHH---HHHHH----HcCCC-----CCC---CccCCHHHHHHHHHHcCCChhhCCCHHHHHHHHHHHHh
Confidence 97654322 22221 11110 001 11122346667789999999999999999999986544
|
| >3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 4asx_A* 2qlu_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=1.5e-15 Score=164.84 Aligned_cols=146 Identities=16% Similarity=0.117 Sum_probs=99.7
Q ss_pred ccCCCCCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeec-----CCCCchhHHHHHHHHHHHHHh
Q 038019 637 VGIGSKPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMR-----GHLTEKADVFSFGVVALEIIS 711 (866)
Q Consensus 637 ~~~~~~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~-----~~~t~ksDVySfGvvLlEl~t 711 (866)
+......|++...+...++.|||.++.+..+.......+..||+.|+|||.+.. ..++.++|||||||++|||+|
T Consensus 154 H~Dlkp~Nill~~~~~~kL~DFg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwslG~il~el~t 233 (322)
T 3soc_A 154 HRDIKSKNVLLKNNLTACIADFGLALKFEAGKSAGDTHGQVGTRRYMAPEVLEGAINFQRDAFLRIDMYAMGLVLWELAS 233 (322)
T ss_dssp CSCCSGGGEEECTTCCEEECCCTTCEEECTTSCCCCCTTCCCCGGGCCHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred eCCCChHhEEECCCCeEEEccCCcccccccccCccccccCccCccccCHhhcccccccCcCCCccchhHHHHHHHHHHHh
Confidence 333334477777777888999999988776543333334579999999999876 466789999999999999999
Q ss_pred cCCCCCCCchhhhh----------cHHHHHHHHhhcCCcccccCCcccc--cCHHHHHHHHHHHHHccCCCCCCCCCHHH
Q 038019 712 GRASSDKSLDMEKI----------YLLEWAWNLHENNQSFGLVDPTLTE--FNDKEALRVIGVALLCTQTSPMMRPPMSR 779 (866)
Q Consensus 712 g~~p~~~~~~~~~~----------~l~~~~~~~~~~~~~~~~~d~~l~~--~~~~~~~~~~~la~~C~~~~p~~RPsm~~ 779 (866)
|+.|+......... ....+...... ....|.+.. ........+.+++..||+.||++||||.|
T Consensus 234 g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~e 308 (322)
T 3soc_A 234 RCTAADGPVDEYMLPFEEEIGQHPSLEDMQEVVVH-----KKKRPVLRDYWQKHAGMAMLCETIEECWDHDAEARLSAGC 308 (322)
T ss_dssp TBTTSSSCCCCCCCTTHHHHCSSCCHHHHHHHHTT-----SCCCCCCCGGGGSSHHHHHHHHHHHHHTCSSGGGSCCHHH
T ss_pred CCCCCCCCcchhccchhhhhccCCchhhhhhhhhc-----ccCCCCccccccccchHHHHHHHHHHHccCChhhCcCHHH
Confidence 99998754322111 11111111111 122233321 12234556778888999999999999999
Q ss_pred HHHHHhcC
Q 038019 780 VVAMLAGD 787 (866)
Q Consensus 780 V~~~L~~~ 787 (866)
|++.|+..
T Consensus 309 ll~~L~~l 316 (322)
T 3soc_A 309 VGERITQM 316 (322)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999853
|
| >2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=1.1e-14 Score=156.73 Aligned_cols=143 Identities=23% Similarity=0.350 Sum_probs=105.1
Q ss_pred CCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCCch
Q 038019 642 KPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSLD 721 (866)
Q Consensus 642 ~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~ 721 (866)
..|++...+...++.|||.+...+............||.+|+|||... +.++.++||||||++++||+||+.|++....
T Consensus 161 p~Nili~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~-~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~ 239 (307)
T 2nru_A 161 SANILLDEAFTAKISDFGLARASEKFAQTVMTSRIVGTTAYMAPEALR-GEITPKSDIYSFGVVLLEIITGLPAVDEHRE 239 (307)
T ss_dssp GGGEEECTTCCEEECCCTTCEECCSCSSCEECSSCCSCGGGCCHHHHT-TEECTHHHHHHHHHHHHHHHHCCCSBCTTBS
T ss_pred HHHEEEcCCCcEEEeecccccccccccccccccccCCCcCcCChHHhc-CCCCccchhHHHHHHHHHHHHCCCCcccCcc
Confidence 346776666677899999998876544333334457999999999775 4689999999999999999999999976443
Q ss_pred hhhhcHHHHHHHHhh-cCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhcC
Q 038019 722 MEKIYLLEWAWNLHE-NNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLAGD 787 (866)
Q Consensus 722 ~~~~~l~~~~~~~~~-~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~~~ 787 (866)
.. .+..+...... ...+.+.+++.+..........+.+++..|++.+|.+||++.+|++.|+..
T Consensus 240 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~l~~~L~~l 304 (307)
T 2nru_A 240 PQ--LLLDIKEEIEDEEKTIEDYIDKKMNDADSTSVEAMYSVASQCLHEKKNKRPDIKKVQQLLQEM 304 (307)
T ss_dssp SS--BTTHHHHHHHTTSCCHHHHSCSSCSCCCHHHHHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHH
T ss_pred hH--HHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHcCCCcccCcCHHHHHHHHHHH
Confidence 22 22222222222 122344566666556666777888899999999999999999999999854
|
| >3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol, transferase; 2.00A {Oryza sativa japonica group} | Back alignment and structure |
|---|
Probab=99.50 E-value=3.7e-15 Score=170.25 Aligned_cols=137 Identities=12% Similarity=0.036 Sum_probs=95.1
Q ss_pred CcccC---HHHHHHHhcCCccccccCCCCcee-----EEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCC
Q 038019 643 PNIFG---YAELRSATKDFNRSNKLGEGGYGP-----VYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRA 714 (866)
Q Consensus 643 ~~~~~---~~~~~~~~~dF~~~~~lg~g~~g~-----vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~ 714 (866)
.|++. ..+...++.|||.++.+....... ......||.+|+|||++.+..++.++||||||||||||++|+.
T Consensus 132 ~NILl~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDvwSlGvil~elltG~~ 211 (483)
T 3sv0_A 132 DNFLMGLGRRANQVYIIDFGLAKKYRDTSTHQHIPYRENKNLTGTARYASVNTHLGIEQSRRDDLESLGYVLMYFLRGSL 211 (483)
T ss_dssp GGEEECCGGGTTCEEECCCTTCEECBCTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSC
T ss_pred ceEEEecCCCCCeEEEEeCCcceeccCCccccccccccccccCCCccccCHHHhcCCCCChHHHHHHHHHHHHHHHhCCC
Confidence 36665 466678899999998887654321 1124579999999999999999999999999999999999999
Q ss_pred CCCCCchhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhcC
Q 038019 715 SSDKSLDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLAGD 787 (866)
Q Consensus 715 p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~~~ 787 (866)
||............+.+...........+ ...+ ..++.+++..|++.+|++||+|.+|+++|+..
T Consensus 212 Pf~~~~~~~~~~~~~~i~~~~~~~~~~~l----~~~~----p~~l~~li~~cl~~dP~~RPs~~el~~~L~~l 276 (483)
T 3sv0_A 212 PWQGLKAGTKKQKYEKISEKKVATSIEAL----CRGY----PTEFASYFHYCRSLRFDDKPDYSYLKRLFRDL 276 (483)
T ss_dssp TTSSCCCSSHHHHHHHHHHHHHHSCHHHH----HTTS----CHHHHHHHHHHHTCCTTCCCCHHHHHHHHHHH
T ss_pred CCccccchhHHHHHHHHhhccccccHHHH----hcCC----cHHHHHHHHHHhcCChhhCcCHHHHHHHHHHH
Confidence 99865433322222222221111100000 0111 23456677799999999999999999998854
|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.50 E-value=3.6e-14 Score=154.54 Aligned_cols=239 Identities=11% Similarity=0.002 Sum_probs=148.0
Q ss_pred eeEEEEEEcccCcC--CCCCcccCCCCCCCEEEccCCCCCCCCCccccC--------CCCcCEEeccCCcCCCCCCcccc
Q 038019 65 CHITKLRVYGLNKK--GVIPEELVTLQYLTVLKIDQNFFTGPLPSFIGN--------LSRLMFLSFSHNDFSGPVPRELG 134 (866)
Q Consensus 65 ~~v~~L~l~~~~l~--~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~--------l~~L~~L~Ls~N~l~~~~p~~l~ 134 (866)
.+++.|+|++|++. ......+. .++.+.+..|.+ ....|.+ +++|+.|+|.+ .++.+-+.+|.
T Consensus 49 ~~L~~LdLs~n~i~~~~~~~~~~~---~~~~~~~~~~~I---~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~ 121 (329)
T 3sb4_A 49 PSLKVLDISNAEIKMYSGKAGTYP---NGKFYIYMANFV---PAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFK 121 (329)
T ss_dssp TTCCEEEEEEEEECCEEESSSSSG---GGCCEEECTTEE---CTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTT
T ss_pred ccCeEEecCcceeEEecCcccccc---cccccccccccc---CHHHhcccccccccccCCCcEEECCc-cccchhHHHhh
Confidence 46899999999887 21111111 122333333321 1223333 55555555554 44433344455
Q ss_pred CCCCCCEeeccCCCCCCCCchhhcCCCCccEEEeecC----CC----------------------CCCChhhhh----cC
Q 038019 135 NLKELTVLAFGTNNFSGALPPELGNLAKLEQLYIDSC----GA----------------------GGEIPSTFA----KL 184 (866)
Q Consensus 135 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n----~l----------------------~~~~p~~~~----~l 184 (866)
+|++|++|+|.+|.++...+..|.++.++..+.+..+ .. .+.++..+. ..
T Consensus 122 ~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~ 201 (329)
T 3sb4_A 122 GCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQP 201 (329)
T ss_dssp TCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCG
T ss_pred cCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCc
Confidence 5555555555555544444444444444443333221 00 111222211 24
Q ss_pred cCCCEEEecCCCCCCCCcccccCCCCCCeEEccCCCCCCCCchhhcCCCCCCEEEccCccCCCCCchhhhcCCCCC-cee
Q 038019 185 RNMQTLWASDNPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLESLQMSDIYNVSSSLDFVMSLKNLT-DLS 263 (866)
Q Consensus 185 ~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~-~L~ 263 (866)
.++..+.+.++-...........+++|+.|+|++|+++...+..|.++++|+.|++.+| +.......|.++++|+ .|+
T Consensus 202 ~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~ 280 (329)
T 3sb4_A 202 RDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLE 280 (329)
T ss_dssp GGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEE
T ss_pred cccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEE
Confidence 55666666554221111111123789999999999998777788999999999999887 6677777899999999 999
Q ss_pred ccCcccccCCCcccCCCCCcCEEeeecCcCcccCCcccCCCCCCcEEEC
Q 038019 264 LRNALITGTIPFGIGELQMLQILDLSFNNLTGQIPATLFNIDSLEYLFL 312 (866)
Q Consensus 264 L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 312 (866)
+.+ .++...+..|..+++|+.|+++.|.++...+..|.++++|+.|+.
T Consensus 281 l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 281 LPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp ECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred Ecc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 988 677666788999999999999999999888889999999999874
|
| >3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} SCOP: d.144.1.7 PDB: 4fk3_A* 3c4c_A* 3c4d_A* 3idp_A* 4g9r_A* 3ii5_A* 4e26_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 3d4q_A* 4e4x_A* 4g9c_A* ... | Back alignment and structure |
|---|
Probab=99.49 E-value=1.2e-14 Score=155.07 Aligned_cols=137 Identities=18% Similarity=0.290 Sum_probs=84.8
Q ss_pred CCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeee---cCCCCchhHHHHHHHHHHHHHhcCCCCCC
Q 038019 642 KPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAM---RGHLTEKADVFSFGVVALEIISGRASSDK 718 (866)
Q Consensus 642 ~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~---~~~~t~ksDVySfGvvLlEl~tg~~p~~~ 718 (866)
..|++...+...++.|||.+...........+....||..|+|||.+. ...++.++||||||++++||+||+.|+..
T Consensus 148 p~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~ 227 (289)
T 3og7_A 148 SNNIFLHEDNTVKIGDFGLATEKSRWSGSHQFEQLSGSILWMAPEVIRMQDSNPYSFQSDVYAFGIVLYELMTGQLPYSN 227 (289)
T ss_dssp GGGEEEETTTEEEECCCC------------------CCCTTCCHHHHC----CCSCHHHHHHHHHHHHHHHHHSSCTTSS
T ss_pred cceEEECCCCCEEEccceeccccccccccccccccCCCccccCchhhcccCCCCCCcccchHHHHHHHHHHHHCCCCccc
Confidence 346777666778899999998776544444556668999999999886 66789999999999999999999999975
Q ss_pred CchhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhcCc
Q 038019 719 SLDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLAGDI 788 (866)
Q Consensus 719 ~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~~~~ 788 (866)
....+ .+.+ ....+.. .+.+..........+.+++..|++.+|++||++.||+++|+...
T Consensus 228 ~~~~~--~~~~----~~~~~~~----~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~ell~~L~~l~ 287 (289)
T 3og7_A 228 INNRD--QIIE----MVGRGSL----SPDLSKVRSNCPKRMKRLMAECLKKKRDERPSFPRILAEIEELA 287 (289)
T ss_dssp CCCHH--HHHH----HHHHTSC----CCCTTSSCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHTT
T ss_pred cchHH--HHHH----Hhccccc----CcchhhccccCCHHHHHHHHHHccCChhhCCCHHHHHHHHHHHh
Confidence 43322 1222 2222211 12221111122244566777999999999999999999998653
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
Probab=99.49 E-value=3.1e-14 Score=139.88 Aligned_cols=133 Identities=17% Similarity=0.189 Sum_probs=81.1
Q ss_pred ccCCCCCCCEEEccCCCCCCCCCccccCCC-CcCEEeccCCcCCCCCCccccCCCCCCEeeccCCCCCCCCchhhcCCCC
Q 038019 84 ELVTLQYLTVLKIDQNFFTGPLPSFIGNLS-RLMFLSFSHNDFSGPVPRELGNLKELTVLAFGTNNFSGALPPELGNLAK 162 (866)
Q Consensus 84 ~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~-~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~ 162 (866)
.+.++.+|++|+|++|.++. +|. +..+. +|++|+|++|.|++. ..|..+++|++|+|++|.+++..+..+..+++
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 89 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPD 89 (176)
T ss_dssp EEECTTSCEEEECTTSCCCS-CCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTT
T ss_pred hcCCcCCceEEEeeCCCCch-hHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCC
Confidence 35566777777777777763 343 33333 777777777777654 46667777777777777776544444466666
Q ss_pred ccEEEeecCCCCCCChh--hhhcCcCCCEEEecCCCCCCCCccc----ccCCCCCCeEEccCCCCC
Q 038019 163 LEQLYIDSCGAGGEIPS--TFAKLRNMQTLWASDNPFTGKIPDF----IGNWTKLKSLRFQGNSFQ 222 (866)
Q Consensus 163 L~~L~L~~n~l~~~~p~--~~~~l~~L~~L~L~~N~l~~~~p~~----l~~l~~L~~L~L~~N~l~ 222 (866)
|++|+|++|.++. +|. .+..+++|++|++++|.++ .+|.. +..+++|+.|+++.|.+.
T Consensus 90 L~~L~L~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 90 LTELILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp CCEEECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CCEEECCCCcCCc-chhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 6666666666643 333 5556666666666666665 33332 555566666666655543
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
Probab=99.49 E-value=2.1e-16 Score=158.76 Aligned_cols=150 Identities=21% Similarity=0.326 Sum_probs=108.8
Q ss_pred cCCCCCCCEEEccCCCCCCCCCc------cccCCCCcCEEeccCCcCCCCCCccccCCCCCCEeeccCCCCCCCCchhhc
Q 038019 85 LVTLQYLTVLKIDQNFFTGPLPS------FIGNLSRLMFLSFSHNDFSGPVPRELGNLKELTVLAFGTNNFSGALPPELG 158 (866)
Q Consensus 85 l~~l~~L~~L~Ls~n~l~~~~p~------~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~ 158 (866)
+.....++.++++.+.+++.+|. .|.++++|++|+|++|.+++ +| .+.++++|++|+|++|.++ .+|..+.
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~ 90 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDA 90 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHH
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhh
Confidence 34455666667777777666665 77788888888888888875 56 7778888888888888887 5677777
Q ss_pred CCCCccEEEeecCCCCCCChhhhhcCcCCCEEEecCCCCCCCCc-ccccCCCCCCeEEccCCCCCCCCch----------
Q 038019 159 NLAKLEQLYIDSCGAGGEIPSTFAKLRNMQTLWASDNPFTGKIP-DFIGNWTKLKSLRFQGNSFQGPIPS---------- 227 (866)
Q Consensus 159 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p-~~l~~l~~L~~L~L~~N~l~~~~p~---------- 227 (866)
.+++|++|+|++|++++ +| .+..+++|++|++++|++++..+ ..+..+++|++|++++|.+.+.+|.
T Consensus 91 ~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~ 168 (198)
T 1ds9_A 91 VADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIE 168 (198)
T ss_dssp HHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHH
T ss_pred cCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHH
Confidence 77888888888888876 34 57788888888888888875322 4677888888888888887765443
Q ss_pred hhcCCCCCCEEE
Q 038019 228 SLSKLASLESLQ 239 (866)
Q Consensus 228 ~~~~l~~L~~L~ 239 (866)
.+..+++|+.|+
T Consensus 169 ~~~~l~~L~~Ld 180 (198)
T 1ds9_A 169 VVKRLPNLKKLD 180 (198)
T ss_dssp HHHHCSSCSEEC
T ss_pred HHHhCCCcEEEC
Confidence 255556666554
|
| >3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=1.3e-14 Score=156.47 Aligned_cols=135 Identities=19% Similarity=0.200 Sum_probs=85.7
Q ss_pred CCCCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCC
Q 038019 640 GSKPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKS 719 (866)
Q Consensus 640 ~~~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~ 719 (866)
....|++...+...++.|||.++..+... .......||.+|+|||.+....++.++|||||||+++||+||+.|+...
T Consensus 165 ikp~NIll~~~~~~kL~Dfg~a~~~~~~~--~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~Pf~~~ 242 (309)
T 3p86_A 165 LKSPNLLVDKKYTVKVCDFGLSRLKASTF--LSSKSAAGTPEWMAPEVLRDEPSNEKSDVYSFGVILWELATLQQPWGNL 242 (309)
T ss_dssp CCGGGEEECTTCCEEECCCC-------------------CCTTSCHHHHTTCCCCTTHHHHHHHHHHHHHHHCCCTTTTS
T ss_pred CChhhEEEeCCCcEEECCCCCCccccccc--cccccCCCCccccChhhhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCC
Confidence 33347777777778899999998765432 1233457999999999999999999999999999999999999999764
Q ss_pred chhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhcCcCC
Q 038019 720 LDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLAGDIEV 790 (866)
Q Consensus 720 ~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~~~~~~ 790 (866)
...+ ....+.. ... ...+..... ..+.+++..|++.+|++||++.||++.|+..+..
T Consensus 243 ~~~~---~~~~~~~---~~~-----~~~~~~~~~---~~l~~li~~~l~~dP~~Rps~~~ll~~L~~~~~~ 299 (309)
T 3p86_A 243 NPAQ---VVAAVGF---KCK-----RLEIPRNLN---PQVAAIIEGCWTNEPWKRPSFATIMDLLRPLIKS 299 (309)
T ss_dssp CHHH---HHHHHHH---SCC-----CCCCCTTSC---HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHC-
T ss_pred CHHH---HHHHHHh---cCC-----CCCCCccCC---HHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHh
Confidence 4322 1111111 110 111111112 2355566799999999999999999999976654
|
| >3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=7.6e-15 Score=159.57 Aligned_cols=139 Identities=18% Similarity=0.237 Sum_probs=97.2
Q ss_pred ccCCCCCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHh-cCCC
Q 038019 637 VGIGSKPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIIS-GRAS 715 (866)
Q Consensus 637 ~~~~~~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~t-g~~p 715 (866)
|......|++...+...++.|||.++.+........+....||.+|+|||.+..+.++.++|||||||+++||+| |+.|
T Consensus 138 H~Dikp~Nil~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~g~~p 217 (325)
T 3kex_A 138 HRNLAARNVLLKSPSQVQVADFGVADLLPPDDKQLLYSEAKTPIKWMALESIHFGKYTHQSDVWSYGVTVWELMTFGAEP 217 (325)
T ss_dssp CSCCSSTTEEESSSSCEEECSCSGGGGSCCCTTCCC-----CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCT
T ss_pred CCccchheEEECCCCeEEECCCCcccccCcccccccccCCCCcccccChHHhccCCCChhhHhHHhHHHHHHHHhCCCCC
Confidence 333334477776667788999999999877665556667788999999999999999999999999999999999 9999
Q ss_pred CCCCchhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhcCcCC
Q 038019 716 SDKSLDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLAGDIEV 790 (866)
Q Consensus 716 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~~~~~~ 790 (866)
+......+ +.+.+ ..+.. ...|.. ....+.+++..|++.+|++||+|.||++.|+.....
T Consensus 218 ~~~~~~~~---~~~~~----~~~~~--~~~~~~------~~~~~~~li~~~l~~dp~~Rps~~el~~~l~~~~~~ 277 (325)
T 3kex_A 218 YAGLRLAE---VPDLL----EKGER--LAQPQI------CTIDVYMVMVKCWMIDENIRPTFKELANEFTRMARD 277 (325)
T ss_dssp TTTSCTTH---HHHHH----HTTCB--CCCCTT------BCTTTTHHHHHHTCSCTTTSCCHHHHHHHHHHHTTS
T ss_pred ccccCHHH---HHHHH----HcCCC--CCCCCc------CcHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHhc
Confidence 97644322 22221 11111 111111 111345567799999999999999999999876543
|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
Probab=99.48 E-value=7.9e-13 Score=147.30 Aligned_cols=223 Identities=8% Similarity=0.010 Sum_probs=113.8
Q ss_pred ccCCCCCCCEEEccCCCCCCCCCccccCCCCcCEEeccCCcCCCCCCccccCCCCCCEeeccCCCCCCCCchhhcCCCCc
Q 038019 84 ELVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKELTVLAFGTNNFSGALPPELGNLAKL 163 (866)
Q Consensus 84 ~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L 163 (866)
.|.++ +|+.++|..+ ++.+...+|.++ +|+.+.|.. .++.+-+.+|.++++|+.++|..|+++......|. ..+|
T Consensus 131 aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L 205 (401)
T 4fdw_A 131 AFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGI 205 (401)
T ss_dssp TTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCC
T ss_pred hcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-eccc
Confidence 34443 4666665544 443444455553 466666654 44444445566666666666666555543333343 4566
Q ss_pred cEEEeecCCCCCCChhhhhcCcCCCEEEecCCCCCCCCcccccCCCCCCeEEccCCCCCCCCchhhcCCCCCCEEEccCc
Q 038019 164 EQLYIDSCGAGGEIPSTFAKLRNMQTLWASDNPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLESLQMSDI 243 (866)
Q Consensus 164 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~n 243 (866)
+.+.|.. .+......+|.++++|+.+.+..| ++..-...|.+ .+|+.+.| .+.++..-...|.++++|+.+.+.++
T Consensus 206 ~~l~lp~-~l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~ 281 (401)
T 4fdw_A 206 EEVLLPV-TLKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKL-PNGVTNIASRAFYYCPELAEVTTYGS 281 (401)
T ss_dssp SEEECCT-TCCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESS
T ss_pred CEEEeCC-chheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEe-CCCccEEChhHhhCCCCCCEEEeCCc
Confidence 6666652 344444555666666666666543 33233334444 45666665 23344344455566666666665554
Q ss_pred cCC-----CCCchhhhcCCCCCceeccCcccccCCCcccCCCCCcCEEeeecCcCcccCCcccCCCCCCcEEECcCCCCc
Q 038019 244 YNV-----SSSLDFVMSLKNLTDLSLRNALITGTIPFGIGELQMLQILDLSFNNLTGQIPATLFNIDSLEYLFLGNNSLS 318 (866)
Q Consensus 244 ~~~-----~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~ 318 (866)
... ......|.++++|+.+.|.+ .++..-...|..+++|+.|+|..| ++......|.++ +|+.|++.+|.+.
T Consensus 282 ~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~ 358 (401)
T 4fdw_A 282 TFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPP 358 (401)
T ss_dssp CCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCC
T ss_pred cccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCc
Confidence 332 23334455555555555552 244333445555555555555433 443444455555 5555555555544
|
| >1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ... | Back alignment and structure |
|---|
Probab=99.48 E-value=1.5e-14 Score=164.65 Aligned_cols=138 Identities=22% Similarity=0.274 Sum_probs=91.7
Q ss_pred ccCCCCCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHh-cCCC
Q 038019 637 VGIGSKPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIIS-GRAS 715 (866)
Q Consensus 637 ~~~~~~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~t-g~~p 715 (866)
|......|++..++...++.|||.++.+..+.+ ....+..+++.|+|||.+..+.++.|+|||||||++|||+| |+.|
T Consensus 303 HrDlkp~Nill~~~~~~kl~DfG~a~~~~~~~~-~~~~~~~~~~~y~aPE~~~~~~~~~~sDvwslG~~l~el~t~g~~P 381 (452)
T 1fmk_A 303 HRDLRAANILVGENLVCKVADFGLARLIEDNEY-TARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVP 381 (452)
T ss_dssp CSCCSGGGEEECGGGCEEECCCCTTC---------------CCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCS
T ss_pred CCCCChhhEEECCCCCEEECCCccceecCCCce-ecccCCcccccccCHhHHhcCCCCccccHHhHHHHHHHHHhCCCCC
Confidence 333334477777777889999999998875443 33445567899999999999999999999999999999999 9999
Q ss_pred CCCCchhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhcCcCC
Q 038019 716 SDKSLDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLAGDIEV 790 (866)
Q Consensus 716 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~~~~~~ 790 (866)
+......+ +... ...+.. +.. +......+.+++..||+.+|++||||.+|+++|+.....
T Consensus 382 ~~~~~~~~---~~~~----i~~~~~-----~~~---~~~~~~~l~~li~~cl~~dP~~Rpt~~~l~~~L~~~~~~ 441 (452)
T 1fmk_A 382 YPGMVNRE---VLDQ----VERGYR-----MPC---PPECPESLHDLMCQCWRKEPEERPTFEYLQAFLEDYFTS 441 (452)
T ss_dssp STTCCHHH---HHHH----HHTTCC-----CCC---CTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTTTSC
T ss_pred CCCCCHHH---HHHH----HHcCCC-----CCC---CCCCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHhcc
Confidence 87544322 2211 222211 111 111223455677799999999999999999999976544
|
| >3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino acid sequence, binding sites, domain, models, molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A | Back alignment and structure |
|---|
Probab=99.48 E-value=5.9e-15 Score=163.16 Aligned_cols=141 Identities=9% Similarity=0.060 Sum_probs=95.8
Q ss_pred CcccCH--HHHHHHhcCCccccccCCCCceeEE-----EeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCC
Q 038019 643 PNIFGY--AELRSATKDFNRSNKLGEGGYGPVY-----KVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRAS 715 (866)
Q Consensus 643 ~~~~~~--~~~~~~~~dF~~~~~lg~g~~g~vy-----~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p 715 (866)
.|++.. .+...++.|||.++.+...+....+ ....||++|||||++.+..++.++|||||||+++||+||+.|
T Consensus 181 ~Nill~~~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~g~~P 260 (364)
T 3op5_A 181 SNLLLNYKNPDQVYLVDYGLAYRYCPEGVHKAYAADPKRCHDGTIEFTSIDAHNGVAPSRRGDLEILGYCMIQWLTGHLP 260 (364)
T ss_dssp GGEEEESSCTTCEEECCCTTCEESSGGGCCCCSSCCSSCCCCCCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSCCT
T ss_pred HHEEEecCCCCeEEEEECCcceecccCCcccccccCcccccCCCCCccCHHHhCCCCCCchhhHHHHHHHHHHHHhCCCC
Confidence 366665 5667789999999887654432222 234599999999999999999999999999999999999999
Q ss_pred CCCCchhhhhcHHHHHHHHhhcCCcccccCCccc-ccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhcCcC
Q 038019 716 SDKSLDMEKIYLLEWAWNLHENNQSFGLVDPTLT-EFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLAGDIE 789 (866)
Q Consensus 716 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~-~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~~~~~ 789 (866)
+...... ...+.+....... .+.+++|+.+. ... ...+.+++..||+.+|++||+|.+|++.|+....
T Consensus 261 f~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~~~~~---~~~~~~li~~cl~~~p~~RP~~~~l~~~l~~~~~ 329 (364)
T 3op5_A 261 WEDNLKD--PKYVRDSKIRYRE-NIASLMDKCFPAANA---PGEIAKYMETVKLLDYTEKPLYENLRDILLQGLK 329 (364)
T ss_dssp TGGGTTC--HHHHHHHHHHHHH-CHHHHHHHHSCTTCC---CHHHHHHHHHHHTCCTTCCCCHHHHHHHHHHHHH
T ss_pred ccccccC--HHHHHHHHHHhhh-hHHHHHHHhcccccC---HHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHH
Confidence 9743221 1222222222111 12223333221 111 2345556669999999999999999999986554
|
| >1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A {Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A* 2csn_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=1.2e-14 Score=155.76 Aligned_cols=129 Identities=10% Similarity=0.030 Sum_probs=88.7
Q ss_pred HHhcCCccccccCCCCcee-----EEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCCchhhhhcH
Q 038019 653 SATKDFNRSNKLGEGGYGP-----VYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSLDMEKIYL 727 (866)
Q Consensus 653 ~~~~dF~~~~~lg~g~~g~-----vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~~~~~~l 727 (866)
.++.|||.++.+....... ......||.+|+|||...+..++.++|||||||+++||+||+.|+...........
T Consensus 150 ~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~ 229 (298)
T 1csn_A 150 IYVVDFGMVKFYRDPVTKQHIPYREKKNLSGTARYMSINTHLGREQSRRDDLEALGHVFMYFLRGSLPWQGLKAATNKQK 229 (298)
T ss_dssp EEECCCTTCEESBCTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCSCCHHHH
T ss_pred EEEEECccccccccccccccccccCccCCCCCcccCCchhhcCCCCChHHHHHHHHHHHHHHHcCCCCcchhhccccHHH
Confidence 7899999998887543221 12345799999999999999999999999999999999999999976443222222
Q ss_pred HHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhcCcC
Q 038019 728 LEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLAGDIE 789 (866)
Q Consensus 728 ~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~~~~~ 789 (866)
...+....... ............+.+++..|++.+|++||++.+|++.|+....
T Consensus 230 ~~~~~~~~~~~--------~~~~~~~~~~~~l~~li~~~l~~dp~~RP~~~~l~~~l~~~~~ 283 (298)
T 1csn_A 230 YERIGEKKQST--------PLRELCAGFPEEFYKYMHYARNLAFDATPDYDYLQGLFSKVLE 283 (298)
T ss_dssp HHHHHHHHHHS--------CHHHHTTTSCHHHHHHHHHHHHCCTTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHhhccCc--------cHHHHHhhCcHHHHHHHHHHhcCCcccCCCHHHHHHHHHHHHH
Confidence 22222111100 0000000112345567779999999999999999999986543
|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
Probab=99.47 E-value=4.5e-13 Score=149.28 Aligned_cols=242 Identities=9% Similarity=0.039 Sum_probs=194.0
Q ss_pred eeEEEEEEcccCcCCCCCcccCCCCCCCEEEccCCCCCCCCCccccCCCCcCEEeccCCcCCCCCCccccCCCCCCEeec
Q 038019 65 CHITKLRVYGLNKKGVIPEELVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKELTVLAF 144 (866)
Q Consensus 65 ~~v~~L~l~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 144 (866)
|+++.+.+..+ ++..-...|.++ +|+.++|.. .++.+....|.+|++|+.++|..|+++......|. +.+|+.+.|
T Consensus 135 ~~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~l 210 (401)
T 4fdw_A 135 SQIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLL 210 (401)
T ss_dssp CCCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEEC
T ss_pred CCccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEe
Confidence 46778887654 665556678775 699999986 67767778899999999999999999866666676 689999999
Q ss_pred cCCCCCCCCchhhcCCCCccEEEeecCCCCCCChhhhhcCcCCCEEEecCCCCCCCCcccccCCCCCCeEEccCCCCC--
Q 038019 145 GTNNFSGALPPELGNLAKLEQLYIDSCGAGGEIPSTFAKLRNMQTLWASDNPFTGKIPDFIGNWTKLKSLRFQGNSFQ-- 222 (866)
Q Consensus 145 s~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~-- 222 (866)
..+ ++.....+|.++++|+.+.|..+ ++..-..+|.+ .+|+.+.+. +.++..-...|.++++|+.+.+.+|.+.
T Consensus 211 p~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~ 286 (401)
T 4fdw_A 211 PVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDD 286 (401)
T ss_dssp CTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCC
T ss_pred CCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCC
Confidence 844 77677788999999999999864 66666777877 799999994 5566566788999999999999998775
Q ss_pred ---CCCchhhcCCCCCCEEEccCccCCCCCchhhhcCCCCCceeccCcccccCCCcccCCCCCcCEEeeecCcCcccCCc
Q 038019 223 ---GPIPSSLSKLASLESLQMSDIYNVSSSLDFVMSLKNLTDLSLRNALITGTIPFGIGELQMLQILDLSFNNLTGQIPA 299 (866)
Q Consensus 223 ---~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~ 299 (866)
...+..|.+|++|+.+.|.+ .+.......|.++++|+.|.|..+ ++..-...|..+ +|+.|++.+|.+......
T Consensus 287 ~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~ 363 (401)
T 4fdw_A 287 PEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEK 363 (401)
T ss_dssp TTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCS
T ss_pred cccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccc
Confidence 35567899999999999984 466677778999999999999665 665566789999 999999999998866666
Q ss_pred ccCCCC-CCcEEECcCCCC
Q 038019 300 TLFNID-SLEYLFLGNNSL 317 (866)
Q Consensus 300 ~l~~l~-~L~~L~L~~N~l 317 (866)
.|..++ +++.|++-.+.+
T Consensus 364 ~F~~~~~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 364 VWYGFPDDITVIRVPAESV 382 (401)
T ss_dssp SCCCSCTTCCEEEECGGGH
T ss_pred cccCCCCCccEEEeCHHHH
Confidence 777664 566777665544
|
| >2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A | Back alignment and structure |
|---|
Probab=99.47 E-value=8.5e-15 Score=162.16 Aligned_cols=133 Identities=19% Similarity=0.216 Sum_probs=94.4
Q ss_pred CCCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHh-cCCCCCCC
Q 038019 641 SKPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIIS-GRASSDKS 719 (866)
Q Consensus 641 ~~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~t-g~~p~~~~ 719 (866)
...|++...+...++.|||.++.+.............+|+.|+|||++.+..++.++|||||||++|||+| |+.|+...
T Consensus 230 kp~NIll~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DvwslG~il~ellt~g~~p~~~~ 309 (370)
T 2psq_A 230 AARNVLVTENNVMKIADFGLARDINNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGI 309 (370)
T ss_dssp CGGGEEECTTCCEEECCCSSCEETTCCCTTCTTTTTTSCGGGCCHHHHHTCCCCHHHHHHHHHHHHHHHHTTSCCSSTTC
T ss_pred chhhEEECCCCCEEEccccCCcccCcccceecccCCCcccceECHhHhcCCCCCcHHHHHHHHHHHHHHHcCCCCCCCCC
Confidence 33477777777788999999987765443222223357789999999999999999999999999999999 99998754
Q ss_pred chhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhcCc
Q 038019 720 LDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLAGDI 788 (866)
Q Consensus 720 ~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~~~~ 788 (866)
...+ +...+ ..+.. +.... .....+.+++..|++.+|++||++.||++.|+...
T Consensus 310 ~~~~---~~~~~----~~~~~-----~~~~~---~~~~~l~~li~~~l~~dP~~Rpt~~ell~~L~~il 363 (370)
T 2psq_A 310 PVEE---LFKLL----KEGHR-----MDKPA---NCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDRIL 363 (370)
T ss_dssp CGGG---HHHHH----HTTCC-----CCCCT---TSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred CHHH---HHHHH----hcCCC-----CCCCC---CCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHH
Confidence 3322 22221 11211 11111 11234556677999999999999999999998654
|
| >3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.5e-14 Score=157.28 Aligned_cols=136 Identities=16% Similarity=0.169 Sum_probs=88.3
Q ss_pred CCCCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHh-cCCCCCC
Q 038019 640 GSKPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIIS-GRASSDK 718 (866)
Q Consensus 640 ~~~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~t-g~~p~~~ 718 (866)
....|++...+...++.|||.++.++.........+..+|..|+|||.+.+..++.++|||||||+++||+| |+.|++.
T Consensus 143 ikp~NIl~~~~~~~kL~DfG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~ 222 (327)
T 3lzb_A 143 LAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDG 222 (327)
T ss_dssp CCGGGEEEEETTEEEECCTTC----------------CCCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTT
T ss_pred CCHHHEEEcCCCCEEEccCcceeEccCccccccccCCCccccccCHHHHcCCCCChHHHHHHHHHHHHHHHHCCCCCCCC
Confidence 333477776677788999999998876554444555678889999999999999999999999999999999 9999976
Q ss_pred CchhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhcCcCC
Q 038019 719 SLDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLAGDIEV 790 (866)
Q Consensus 719 ~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~~~~~~ 790 (866)
....+ +...+ ..+.. +..... ....+.+++..|++.+|++||++.||++.|+.....
T Consensus 223 ~~~~~---~~~~~----~~~~~-----~~~~~~---~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~~~ 279 (327)
T 3lzb_A 223 IPASE---ISSIL----EKGER-----LPQPPI---CTIDVYMIMRKCWMIDADSRPKFRELIIEFSKMARD 279 (327)
T ss_dssp CCGGG---HHHHH----HTTCC-----CCCCTT---BCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHTS
T ss_pred CCHHH---HHHHH----HcCCC-----CCCCcc---CCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHHhC
Confidence 54332 22221 11110 111111 122355667799999999999999999999976544
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
Probab=99.47 E-value=2.1e-16 Score=158.73 Aligned_cols=150 Identities=19% Similarity=0.268 Sum_probs=128.9
Q ss_pred eEEEEEEcccCcCCCCCc------ccCCCCCCCEEEccCCCCCCCCCccccCCCCcCEEeccCCcCCCCCCccccCCCCC
Q 038019 66 HITKLRVYGLNKKGVIPE------ELVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKEL 139 (866)
Q Consensus 66 ~v~~L~l~~~~l~~~~p~------~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L 139 (866)
+++.+++..+.++|.+|. .|..+++|++|+|++|.+++ +| .+.++++|++|+|++|.++ .+|..+..+++|
T Consensus 19 ~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L 95 (198)
T 1ds9_A 19 SVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTL 95 (198)
T ss_dssp CCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHC
T ss_pred cccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcC
Confidence 455666777777777776 89999999999999999986 67 8999999999999999998 678888888999
Q ss_pred CEeeccCCCCCCCCchhhcCCCCccEEEeecCCCCCCCh-hhhhcCcCCCEEEecCCCCCCCCcc----------cccCC
Q 038019 140 TVLAFGTNNFSGALPPELGNLAKLEQLYIDSCGAGGEIP-STFAKLRNMQTLWASDNPFTGKIPD----------FIGNW 208 (866)
Q Consensus 140 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~p~----------~l~~l 208 (866)
++|+|++|++++ +| .+..+++|++|+|++|.++...+ ..+..+++|++|++++|.+++.+|. .+..+
T Consensus 96 ~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l 173 (198)
T 1ds9_A 96 EELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRL 173 (198)
T ss_dssp SEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHC
T ss_pred CEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhC
Confidence 999999999986 44 79999999999999999987543 5799999999999999999876654 37889
Q ss_pred CCCCeEEccCCCCC
Q 038019 209 TKLKSLRFQGNSFQ 222 (866)
Q Consensus 209 ~~L~~L~L~~N~l~ 222 (866)
++|+.|+ +|.++
T Consensus 174 ~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 174 PNLKKLD--GMPVD 185 (198)
T ss_dssp SSCSEEC--CGGGT
T ss_pred CCcEEEC--CcccC
Confidence 9999987 66655
|
| >4hgt_A Casein kinase I isoform delta; CK1D, inhibitor, transferase-transferase inhibitor C; HET: 15G; 1.80A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 3uzp_A* 4hnf_A* 1cki_A 1ckj_A 4hni_A* 4hok_A | Back alignment and structure |
|---|
Probab=99.47 E-value=1.3e-14 Score=155.23 Aligned_cols=139 Identities=12% Similarity=0.023 Sum_probs=95.3
Q ss_pred CcccC---HHHHHHHhcCCccccccCCCCcee-----EEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCC
Q 038019 643 PNIFG---YAELRSATKDFNRSNKLGEGGYGP-----VYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRA 714 (866)
Q Consensus 643 ~~~~~---~~~~~~~~~dF~~~~~lg~g~~g~-----vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~ 714 (866)
.|++. ..+...++.|||.++.+....... ......||..|+|||...+..++.++|||||||+++||+||+.
T Consensus 134 ~NIl~~~~~~~~~~kL~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~ 213 (296)
T 4hgt_A 134 DNFLMGLGKKGNLVYIIDFGLAKKYRDARTHQHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSL 213 (296)
T ss_dssp GGEEECCGGGTTCEEECCCTTCEECBCTTTCCBCCCCCSCCCCSCGGGCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSC
T ss_pred HHeeeeccCCCCeEEEecCccceeccCcccCccCCCCcccccCCCccccchHHhcCCCCCchhHHHHHHHHHHHHhcCCC
Confidence 46665 566677899999998887654321 1224478999999999999999999999999999999999999
Q ss_pred CCCCCchhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhcCcC
Q 038019 715 SSDKSLDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLAGDIE 789 (866)
Q Consensus 715 p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~~~~~ 789 (866)
|+..............+......... +.+. ..+ ...+.+++..|++.+|++||++.+|++.|+....
T Consensus 214 pf~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~----~~~l~~li~~~l~~~p~~Rpt~~~l~~~l~~~~~ 280 (296)
T 4hgt_A 214 PWQGLKAATKRQKYERISEKKMSTPI-EVLC---KGY----PSEFATYLNFCRSLRFDDKPDYSYLRQLFRNLFH 280 (296)
T ss_dssp TTSSCCCSSSSSHHHHHHHHHHHSCH-HHHT---TTS----CHHHHHHHHHHHTSCTTCCCCHHHHHHHHHHHHH
T ss_pred CCcccchhhhhhhhhhhhcccccchh-hhhh---ccC----CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH
Confidence 99764433322222222211110000 0000 011 2345667779999999999999999999986543
|
| >3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor, PF670462, transferase-transferase I complex; HET: 0CK; 1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A | Back alignment and structure |
|---|
Probab=99.46 E-value=1.4e-14 Score=154.94 Aligned_cols=139 Identities=12% Similarity=0.023 Sum_probs=94.2
Q ss_pred CcccC---HHHHHHHhcCCccccccCCCCcee-----EEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCC
Q 038019 643 PNIFG---YAELRSATKDFNRSNKLGEGGYGP-----VYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRA 714 (866)
Q Consensus 643 ~~~~~---~~~~~~~~~dF~~~~~lg~g~~g~-----vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~ 714 (866)
.|++. ..+...++.|||.+..++...... ......||..|+|||...+..++.++|||||||+++||+||+.
T Consensus 134 ~NIl~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~ 213 (296)
T 3uzp_A 134 DNFLMGLGKKGNLVYIIDFGLAKKYRDARTHQHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSL 213 (296)
T ss_dssp GGEEECCGGGTTCEEECCCTTCEECBCTTTCCBCCCCCSCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSC
T ss_pred HHeEEecCCCCCeEEEeeCCCcccccccccccccccccccccccccccCChhhhcCCCCCcchhhHHHHHHHHHHHhCCC
Confidence 35655 356667899999998887654311 1134479999999999999999999999999999999999999
Q ss_pred CCCCCchhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhcCcC
Q 038019 715 SSDKSLDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLAGDIE 789 (866)
Q Consensus 715 p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~~~~~ 789 (866)
|+..............+......... +.+. ..+ ...+.+++..|++.+|++||++.+|++.|+....
T Consensus 214 pf~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~----~~~l~~li~~~l~~dp~~Rps~~~l~~~l~~~~~ 280 (296)
T 3uzp_A 214 PWQGLKAATKRQKYERISEKKMSTPI-EVLC---KGY----PSEFATYLNFCRSLRFDDKPDYSYLRQLFRNLFH 280 (296)
T ss_dssp TTSSCCCSSSSSHHHHHHHHHHHSCH-HHHT---TTS----CHHHHHHHHHHHTSCTTCCCCHHHHHHHHHHHHH
T ss_pred CCCCcCchhhhhhhhhhcccccCCch-HHHH---hhC----CHHHHHHHHHHHhcCcCcCCCHHHHHHHHHHHHH
Confidence 99764432222222222211110000 0000 111 1345667779999999999999999999986543
|
| >2izr_A Casein kinase I isoform gamma-3; serine/threonine-protein kinase, transferase, ATP- binding, phosphorylation, nucleotide-binding; HET: BRK; 1.3A {Homo sapiens} PDB: 2izs_A* 2izt_A* 2izu_A* 2chl_A* 2c47_A* 2cmw_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=3.8e-14 Score=154.41 Aligned_cols=137 Identities=8% Similarity=-0.015 Sum_probs=93.5
Q ss_pred CcccCHHHHH-----HHhcCCccccccCCCCceeE-----EEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhc
Q 038019 643 PNIFGYAELR-----SATKDFNRSNKLGEGGYGPV-----YKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISG 712 (866)
Q Consensus 643 ~~~~~~~~~~-----~~~~dF~~~~~lg~g~~g~v-----y~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg 712 (866)
.|++...+.. .++.|||.++.+........ .....||..|+|||.+.+..++.++|||||||+++||+||
T Consensus 134 ~Nill~~~~~~~~~~~kl~DFg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g 213 (330)
T 2izr_A 134 ENFLIGRPGNKTQQVIHIIDFALAKEYIDPETKKHIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRG 213 (330)
T ss_dssp GGEEECCGGGTCTTSEEECCCTTCEESBCTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHS
T ss_pred HHeeeccCCCCCCceEEEEEcccceeeecCCCCccccccccCCcCCCccccChHHHcCCCCCchhHHHHHHHHHHHHhcC
Confidence 3666655554 78999999988765432211 1345799999999999999999999999999999999999
Q ss_pred CCCCCCCchhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhcCc
Q 038019 713 RASSDKSLDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLAGDI 788 (866)
Q Consensus 713 ~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~~~~ 788 (866)
+.|+......+.......+......... +.+....+ .+.+++..|++.+|.+||++.+|++.|+...
T Consensus 214 ~~Pf~~~~~~~~~~~~~~i~~~~~~~~~-----~~~~~~~p----~~~~li~~~l~~~p~~RP~~~~l~~~l~~~~ 280 (330)
T 2izr_A 214 SLPWQGLKADTLKERYQKIGDTKRATPI-----EVLCENFP----EMATYLRYVRRLDFFEKPDYDYLRKLFTDLF 280 (330)
T ss_dssp SCTTTTCCCSSHHHHHHHHHHHHHHSCH-----HHHTTTCH----HHHHHHHHHHHCCTTCCCCHHHHHHHHHHHH
T ss_pred CCCccccccccHHHHHHHHHhhhccCCH-----HHHhccCh----HHHHHHHHHHhCCCCCCCCHHHHHHHHHHHH
Confidence 9999864432222222222111100000 00001111 5666777999999999999999999998544
|
| >3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vhk_A* 3vid_A* 3hng_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=2.4e-14 Score=157.86 Aligned_cols=138 Identities=20% Similarity=0.164 Sum_probs=98.5
Q ss_pred ccCCCCCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHh-cCCC
Q 038019 637 VGIGSKPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIIS-GRAS 715 (866)
Q Consensus 637 ~~~~~~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~t-g~~p 715 (866)
|......|++...+...++.|||.+..+..+..........||.+|+|||++.+..++.++|||||||+++||+| |+.|
T Consensus 216 H~Dikp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p 295 (359)
T 3vhe_A 216 HRDLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASP 295 (359)
T ss_dssp CSCCSGGGEEECGGGCEEECCCGGGSCTTSCTTCEEC--CEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCS
T ss_pred cCCCChhhEEEcCCCcEEEEeccceeeecccccchhccccCCCceeEChhhhcCCCCCchhhhhhHHHHHHHHHhcCCCC
Confidence 333334478877778889999999998876655555556678999999999999999999999999999999999 9999
Q ss_pred CCCCchhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhcCc
Q 038019 716 SDKSLDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLAGDI 788 (866)
Q Consensus 716 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~~~~ 788 (866)
+......+. +......+.. +....... ..+.+++..|++.+|++||+|.||++.|+...
T Consensus 296 ~~~~~~~~~------~~~~~~~~~~-----~~~~~~~~---~~l~~li~~~l~~dP~~Rps~~ell~~L~~~~ 354 (359)
T 3vhe_A 296 YPGVKIDEE------FCRRLKEGTR-----MRAPDYTT---PEMYQTMLDCWHGEPSQRPTFSELVEHLGNLL 354 (359)
T ss_dssp STTCCCSHH------HHHHHHHTCC-----CCCCTTCC---HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred CCccchhHH------HHHHHHcCCC-----CCCCCCCC---HHHHHHHHHHccCChhhCCCHHHHHHHHHHHH
Confidence 875432221 1111221111 11111112 23556677999999999999999999998643
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
Probab=99.46 E-value=1e-13 Score=136.19 Aligned_cols=131 Identities=15% Similarity=0.163 Sum_probs=104.5
Q ss_pred cccCCCCcCEEeccCCcCCCCCCccccCCC-CCCEeeccCCCCCCCCchhhcCCCCccEEEeecCCCCCCChhhhhcCcC
Q 038019 108 FIGNLSRLMFLSFSHNDFSGPVPRELGNLK-ELTVLAFGTNNFSGALPPELGNLAKLEQLYIDSCGAGGEIPSTFAKLRN 186 (866)
Q Consensus 108 ~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~-~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~ 186 (866)
.+.++.+|++|+|++|+++. +|. +..+. +|++|+|++|.+++. ..+..+++|++|+|++|.+++..+..|..+++
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 89 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPD 89 (176)
T ss_dssp EEECTTSCEEEECTTSCCCS-CCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTT
T ss_pred hcCCcCCceEEEeeCCCCch-hHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCC
Confidence 46778899999999999984 454 55544 999999999999865 67888999999999999998776666788999
Q ss_pred CCEEEecCCCCCCCCcc--cccCCCCCCeEEccCCCCCCCCch----hhcCCCCCCEEEccCcc
Q 038019 187 MQTLWASDNPFTGKIPD--FIGNWTKLKSLRFQGNSFQGPIPS----SLSKLASLESLQMSDIY 244 (866)
Q Consensus 187 L~~L~L~~N~l~~~~p~--~l~~l~~L~~L~L~~N~l~~~~p~----~~~~l~~L~~L~l~~n~ 244 (866)
|++|+|++|+++ .+|. .+..+++|+.|++++|.+.. +|. .+..+++|+.|+++.|.
T Consensus 90 L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 90 LTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp CCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTEECC
T ss_pred CCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCCCcCC
Confidence 999999999986 4555 78888899999999998874 344 36667777777666554
|
| >1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7 | Back alignment and structure |
|---|
Probab=99.45 E-value=1.5e-14 Score=158.26 Aligned_cols=135 Identities=21% Similarity=0.248 Sum_probs=96.2
Q ss_pred CCCCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHh-cCCCCCC
Q 038019 640 GSKPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIIS-GRASSDK 718 (866)
Q Consensus 640 ~~~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~t-g~~p~~~ 718 (866)
....|++...+...++.|||.++.+....+........||.+|+|||.+..+.++.++|||||||+++||+| |+.|+..
T Consensus 200 lkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~ 279 (343)
T 1luf_A 200 LATRNCLVGENMVVKIADFGLSRNIYSADYYKADGNDAIPIRWMPPESIFYNRYTTESDVWAYGVVLWEIFSYGLQPYYG 279 (343)
T ss_dssp CSGGGEEECGGGCEEECCCSCHHHHTGGGCBC----CCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTT
T ss_pred CCcceEEECCCCeEEEeecCCCcccccCccccccCCCcccceecChhhhccCCcCcccccHHHHHHHHHHHhcCCCcCCC
Confidence 333477777778889999999988765544444455678999999999999999999999999999999999 9999875
Q ss_pred CchhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhcCcC
Q 038019 719 SLDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLAGDIE 789 (866)
Q Consensus 719 ~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~~~~~ 789 (866)
....+ +.. ....+... ..... ....+.+++..|++.+|++||++.+|++.|+....
T Consensus 280 ~~~~~---~~~----~~~~~~~~-----~~~~~---~~~~l~~li~~~l~~~p~~Rps~~~~~~~L~~~~~ 335 (343)
T 1luf_A 280 MAHEE---VIY----YVRDGNIL-----ACPEN---CPLELYNLMRLCWSKLPADRPSFCSIHRILQRMCE 335 (343)
T ss_dssp SCHHH---HHH----HHHTTCCC-----CCCTT---CCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHTTC
T ss_pred CChHH---HHH----HHhCCCcC-----CCCCC---CCHHHHHHHHHHcccCcccCCCHHHHHHHHHHHHh
Confidence 43221 111 12222211 11111 12345566779999999999999999999997654
|
| >4b99_A Mitogen-activated protein kinase 7; transferase, inhibitor; HET: R4L; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.3e-14 Score=161.21 Aligned_cols=143 Identities=12% Similarity=0.058 Sum_probs=88.8
Q ss_pred hccCCCCCcccCHHHHHHHhcCCccccccCCCCc--eeEEEeecCCCCccCceeeecC-CCCchhHHHHHHHHHHHHHhc
Q 038019 636 LVGIGSKPNIFGYAELRSATKDFNRSNKLGEGGY--GPVYKVTANSYGYLAPEYAMRG-HLTEKADVFSFGVVALEIISG 712 (866)
Q Consensus 636 ~~~~~~~~~~~~~~~~~~~~~dF~~~~~lg~g~~--g~vy~~~~gt~gY~aPE~~~~~-~~t~ksDVySfGvvLlEl~tg 712 (866)
+|...+..|++...+...++.|||+++.+..... .......+||+.|||||.+.+. .++.++||||+||+++||+||
T Consensus 180 iHRDlKP~NIl~~~~~~~Ki~DFGla~~~~~~~~~~~~~~~~~~GT~~Y~APEv~~~~~~~~~~~DiWSlG~il~ell~G 259 (398)
T 4b99_A 180 IHRDLKPSNLLVNENCELKIGDFGMARGLCTSPAEHQYFMTEYVATRWYRAPELMLSLHEYTQAIDLWSVGCIFGEMLAR 259 (398)
T ss_dssp BCCCCCGGGEEECTTCCEEECCCTTCBCC-------CCCCCSSCCCCTTCCHHHHTTCSCCCTHHHHHHHHHHHHHHHHT
T ss_pred cCCCcCccccccCCCCCEEEeecceeeecccCccccccccccceeChHhcCHHHhcCCCCCCChhheehhHHHHHHHHHC
Confidence 3333334477777777889999999998864322 1223345899999999988764 569999999999999999999
Q ss_pred CCCCCCCchhhhhcHHHHHHHHhhc---CCccc-----------ccCCcccccCHH-----HHHHHHHHHHHccCCCCCC
Q 038019 713 RASSDKSLDMEKIYLLEWAWNLHEN---NQSFG-----------LVDPTLTEFNDK-----EALRVIGVALLCTQTSPMM 773 (866)
Q Consensus 713 ~~p~~~~~~~~~~~l~~~~~~~~~~---~~~~~-----------~~d~~l~~~~~~-----~~~~~~~la~~C~~~~p~~ 773 (866)
+.||......+.. ..+...... ..... .+.+.. ..+.+ ....+.++..+|++.||++
T Consensus 260 ~~pF~g~~~~~~l---~~I~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~~~dLl~~mL~~dP~~ 335 (398)
T 4b99_A 260 RQLFPGKNYVHQL---QLIMMVLGTPSPAVIQAVGAERVRAYIQSLPPRQ-PVPWETVYPGADRQALSLLGRMLRFEPSA 335 (398)
T ss_dssp SCSSCCSSHHHHH---HHHHHHHCCCCGGGTC-----CHHHHHHSSCCCC-CCCHHHHSTTCCHHHHHHHHHHSCSSTTT
T ss_pred CCCCCCCCHHHHH---HHHHHhcCCCChHHhhhhhhhhhhhhhhcCCCcC-CCCHHHhCCCCCHHHHHHHHHHCcCChhH
Confidence 9999865433322 111111100 00000 000000 00000 1123456677999999999
Q ss_pred CCCHHHHHH
Q 038019 774 RPPMSRVVA 782 (866)
Q Consensus 774 RPsm~~V~~ 782 (866)
|||+.|+++
T Consensus 336 R~ta~e~L~ 344 (398)
T 4b99_A 336 RISAAAALR 344 (398)
T ss_dssp SCCHHHHTT
T ss_pred CcCHHHHhc
Confidence 999998864
|
| >1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B | Back alignment and structure |
|---|
Probab=99.45 E-value=1.1e-14 Score=166.02 Aligned_cols=138 Identities=21% Similarity=0.290 Sum_probs=96.9
Q ss_pred ccCCCCCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHh-cCCC
Q 038019 637 VGIGSKPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIIS-GRAS 715 (866)
Q Consensus 637 ~~~~~~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~t-g~~p 715 (866)
|......|++...+...++.|||.++.+..+.+ ....+..+|+.|+|||.+..+.++.++|||||||++|||+| |+.|
T Consensus 307 HrDlkp~Nill~~~~~~kl~DFG~a~~~~~~~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~t~g~~P 385 (454)
T 1qcf_A 307 HRDLRAANILVSASLVCKIADFGLARVIEDNEY-TAREGAKFPIKWTAPEAINFGSFTIKSDVWSFGILLMEIVTYGRIP 385 (454)
T ss_dssp CSSCSGGGEEECTTCCEEECSTTGGGGBCCHHH-HTTCSSSSCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCS
T ss_pred CCCCCHHHEEECCCCcEEEeeCCCceEcCCCce-eccCCCcccccccCHHHhccCCCCcHHHHHhHHHHHHHHHhCCCCC
Confidence 333333477777777788999999998764322 11233456789999999999999999999999999999999 9999
Q ss_pred CCCCchhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhcCcCC
Q 038019 716 SDKSLDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLAGDIEV 790 (866)
Q Consensus 716 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~~~~~~ 790 (866)
+......+ +...+. .+.. . +. +......+.+++..||+.+|++||||.+|+++|+.....
T Consensus 386 ~~~~~~~~---~~~~i~----~~~~--~--~~----~~~~~~~l~~li~~cl~~dp~~RPt~~~i~~~L~~~~~~ 445 (454)
T 1qcf_A 386 YPGMSNPE---VIRALE----RGYR--M--PR----PENCPEELYNIMMRCWKNRPEERPTFEYIQSVLDDFYTA 445 (454)
T ss_dssp STTCCHHH---HHHHHH----HTCC--C--CC----CTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTSSSS
T ss_pred CCCCCHHH---HHHHHH----cCCC--C--CC----CCCCCHHHHHHHHHHccCChhHCcCHHHHHHHHHHHHhc
Confidence 97544322 222221 1110 0 11 111223456677799999999999999999999976543
|
| >3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.44 E-value=1.5e-14 Score=157.19 Aligned_cols=136 Identities=20% Similarity=0.220 Sum_probs=93.0
Q ss_pred CCCcccCHHHHHHHhcCCccccccCCCCc-eeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHh-cCCCCCC
Q 038019 641 SKPNIFGYAELRSATKDFNRSNKLGEGGY-GPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIIS-GRASSDK 718 (866)
Q Consensus 641 ~~~~~~~~~~~~~~~~dF~~~~~lg~g~~-g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~t-g~~p~~~ 718 (866)
...|++...+...++.|||.++.+..... .....+..+|++|+|||++....++.++|||||||+++||+| |+.|+..
T Consensus 178 kp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~ 257 (325)
T 3kul_A 178 AARNVLVDSNLVCKVSDFGLSRVLEDDPDAAYTTTGGKIPIRWTAPEAIAFRTFSSASDVWSFGVVMWEVLAYGERPYWN 257 (325)
T ss_dssp SGGGEEECTTCCEEECCCSSCEECC----CCEECC---CCGGGSCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTT
T ss_pred CcceEEECCCCCEEECCCCcccccccCccceeeccCCCCcccccCHhHhcCCCCCcHHHHHHHHHHHHHHHcCCCCCccc
Confidence 33477777777788999999998865432 122234457889999999999999999999999999999999 9999875
Q ss_pred CchhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhcCcCCC
Q 038019 719 SLDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLAGDIEVG 791 (866)
Q Consensus 719 ~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~~~~~~~ 791 (866)
....+ +...+ ..+. .+... ......+.+++..|++.||++||+|.||+++|+.....+
T Consensus 258 ~~~~~---~~~~~----~~~~-----~~~~~---~~~~~~l~~li~~~l~~dp~~Rps~~eil~~L~~l~~~~ 315 (325)
T 3kul_A 258 MTNRD---VISSV----EEGY-----RLPAP---MGCPHALHQLMLDCWHKDRAQRPRFSQIVSVLDALIRSP 315 (325)
T ss_dssp SCHHH---HHHHH----HTTC-----CCCCC---TTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHSC
T ss_pred CCHHH---HHHHH----HcCC-----CCCCC---CCcCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHhCc
Confidence 44322 22111 1111 11111 111234556777999999999999999999999765543
|
| >3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=3.8e-14 Score=152.01 Aligned_cols=145 Identities=14% Similarity=0.124 Sum_probs=97.4
Q ss_pred hccCCCCCcccCHHHHHHHhcCCccccccCCCCceeE--EEeecCCCCccCceeeecC------CCCchhHHHHHHHHHH
Q 038019 636 LVGIGSKPNIFGYAELRSATKDFNRSNKLGEGGYGPV--YKVTANSYGYLAPEYAMRG------HLTEKADVFSFGVVAL 707 (866)
Q Consensus 636 ~~~~~~~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~v--y~~~~gt~gY~aPE~~~~~------~~t~ksDVySfGvvLl 707 (866)
.|......|++...+...++.|||.++.+........ .....||++|+|||.+... .++.++|||||||+++
T Consensus 135 vH~Dlkp~Nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DvwslG~il~ 214 (301)
T 3q4u_A 135 AHRDLKSKNILVKKNGQCCIADLGLAVMHSQSTNQLDVGNNPRVGTKRYMAPEVLDETIQVDCFDSYKRVDIWAFGLVLW 214 (301)
T ss_dssp ECSCCCGGGEEECTTSCEEECCCTTCEEEETTTTEEECCCCCCCCCGGGCCHHHHTTCCCTTCHHHHHHHHHHHHHHHHH
T ss_pred ecCCCChHhEEEcCCCCEEEeeCCCeeecccccccccccccccccccceeChhhhcCcCCCCcccCCchhhHHHHHHHHH
Confidence 3333344477777777888999999987765443221 1233799999999998876 5668999999999999
Q ss_pred HHHhc----------CCCCCCCchhhhhcHHHHHHHHhhcCCcccccCCccc--ccCHHHHHHHHHHHHHccCCCCCCCC
Q 038019 708 EIISG----------RASSDKSLDMEKIYLLEWAWNLHENNQSFGLVDPTLT--EFNDKEALRVIGVALLCTQTSPMMRP 775 (866)
Q Consensus 708 El~tg----------~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~--~~~~~~~~~~~~la~~C~~~~p~~RP 775 (866)
||+|| +.|+........ ..... ...... +...+.+. .........+.+++..|++.||++||
T Consensus 215 el~tg~~~~~~~~~~~~pf~~~~~~~~-~~~~~-~~~~~~----~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rp 288 (301)
T 3q4u_A 215 EVARRMVSNGIVEDYKPPFYDVVPNDP-SFEDM-RKVVCV----DQQRPNIPNRWFSDPTLTSLAKLMKECWYQNPSARL 288 (301)
T ss_dssp HHHTTBCBTTBCCCCCCTTTTTSCSSC-CHHHH-HHHHTT----SCCCCCCCGGGGGSHHHHHHHHHHHHHCCSSGGGSC
T ss_pred HHHhhhcCccccccccccccccCCCCc-chhhh-hHHHhc----cCCCCCCChhhccCccHHHHHHHHHHHhhcChhhCC
Confidence 99999 777754332211 11111 111111 11222221 12334556777888899999999999
Q ss_pred CHHHHHHHHhc
Q 038019 776 PMSRVVAMLAG 786 (866)
Q Consensus 776 sm~~V~~~L~~ 786 (866)
||.||+++|+.
T Consensus 289 s~~~i~~~L~~ 299 (301)
T 3q4u_A 289 TALRIKKTLTK 299 (301)
T ss_dssp CHHHHHHHHHH
T ss_pred CHHHHHHHHhc
Confidence 99999999974
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
Probab=99.44 E-value=4.4e-13 Score=130.81 Aligned_cols=108 Identities=19% Similarity=0.222 Sum_probs=76.6
Q ss_pred eEEEEEEcccCcCCCCCcccCCCCCCCEEEccCCCCCCCCCccccCCCCcCEEeccCCcCCCCCCccccCCCCCCEeecc
Q 038019 66 HITKLRVYGLNKKGVIPEELVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKELTVLAFG 145 (866)
Q Consensus 66 ~v~~L~l~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls 145 (866)
..+.|++++|.++. +|..+. ++|++|+|++|+|++..|..|.++++|++|+|++|+|++..+..|.++++|++|+|+
T Consensus 10 ~~~~l~~s~n~l~~-ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 10 SGTTVDCSGKSLAS-VPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp ETTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEeCCCCcCc-cCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 34567777777764 555553 677777887777777767777777777777777777776666667777777777777
Q ss_pred CCCCCCCCchhhcCCCCccEEEeecCCCCCC
Q 038019 146 TNNFSGALPPELGNLAKLEQLYIDSCGAGGE 176 (866)
Q Consensus 146 ~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ 176 (866)
+|++++..+..|..+++|++|+|++|.+...
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 7777766555677777777777777766544
|
| >3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.44 E-value=2.9e-14 Score=158.72 Aligned_cols=136 Identities=18% Similarity=0.197 Sum_probs=97.2
Q ss_pred CCCCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHh-cCCCCCC
Q 038019 640 GSKPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIIS-GRASSDK 718 (866)
Q Consensus 640 ~~~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~t-g~~p~~~ 718 (866)
....|++..++...++.|||.++.++............+|++|+|||++.+..++.++|||||||+++||+| |+.|+..
T Consensus 217 lkp~NIll~~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwslG~il~ellt~g~~p~~~ 296 (382)
T 3tt0_A 217 LAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPG 296 (382)
T ss_dssp CCGGGEEECTTCCEEECSCSCCCCSSCCCTTCCCTTCCCGGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCSSTT
T ss_pred CCcceEEEcCCCcEEEcccCcccccccccccccccCCCCCcceeCHHHhcCCCCCchhHHHHHHHHHHHHHhCCCCCCCC
Confidence 333477777777888999999998876544333334467889999999999999999999999999999999 9999875
Q ss_pred CchhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhcCcCC
Q 038019 719 SLDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLAGDIEV 790 (866)
Q Consensus 719 ~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~~~~~~ 790 (866)
....+ +.+. ...+.. +...... ...+.+++..|++.+|++||+|.||++.|+.....
T Consensus 297 ~~~~~---~~~~----~~~~~~-----~~~~~~~---~~~l~~li~~~l~~dP~~Rps~~ell~~L~~~~~~ 353 (382)
T 3tt0_A 297 VPVEE---LFKL----LKEGHR-----MDKPSNC---TNELYMMMRDCWHAVPSQRPTFKQLVEDLDRIVAL 353 (382)
T ss_dssp CCHHH---HHHH----HHTTCC-----CCCCSSC---CHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred CCHHH---HHHH----HHcCCC-----CCCCccC---CHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHH
Confidence 43221 2222 222211 1111111 22455667799999999999999999999976543
|
| >2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ... | Back alignment and structure |
|---|
Probab=99.43 E-value=1.6e-14 Score=160.09 Aligned_cols=135 Identities=19% Similarity=0.244 Sum_probs=83.1
Q ss_pred CCCcccCHHHHHHHhcCCccccccCCCCce-eEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHh-cCCCCCC
Q 038019 641 SKPNIFGYAELRSATKDFNRSNKLGEGGYG-PVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIIS-GRASSDK 718 (866)
Q Consensus 641 ~~~~~~~~~~~~~~~~dF~~~~~lg~g~~g-~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~t-g~~p~~~ 718 (866)
...|++...+...++.|||.++.+...... ....+..+|++|+|||++..+.++.++|||||||++|||++ |+.|+..
T Consensus 174 kp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~SlG~il~ellt~g~~P~~~ 253 (373)
T 2qol_A 174 AARNILINSNLVCKVSDFGLGRVLEDDPEAAYTTRGGKIPIRWTSPEAIAYRKFTSASDVWSYGIVLWEVMSYGERPYWE 253 (373)
T ss_dssp CGGGEEECTTCCEEECCC----------------------CTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTC-CTTTT
T ss_pred CcceEEEcCCCCEEECcCccccccccCCccceeccCCCcCCCccChhhhccCCcCchhcHHHHHHHHHHHHhCCCCCCCC
Confidence 334777777777889999999888654321 12233356789999999999999999999999999999998 9999875
Q ss_pred CchhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhcCcCC
Q 038019 719 SLDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLAGDIEV 790 (866)
Q Consensus 719 ~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~~~~~~ 790 (866)
....+ +...+ ..+.. .+. +......+.+++..|++.+|++||+|.||+++|+..+..
T Consensus 254 ~~~~~---~~~~i----~~~~~----~~~----~~~~~~~l~~li~~cl~~dp~~RPs~~~i~~~L~~~~~~ 310 (373)
T 2qol_A 254 MSNQD---VIKAV----DEGYR----LPP----PMDCPAALYQLMLDCWQKDRNNRPKFEQIVSILDKLIRN 310 (373)
T ss_dssp CCHHH---HHHHH----HTTEE----CCC----CTTCBHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHC
T ss_pred CCHHH---HHHHH----HcCCC----CCC----CccccHHHHHHHHHHhCcChhhCcCHHHHHHHHHHHHhC
Confidence 44322 22211 11110 010 111234466777899999999999999999999876543
|
| >3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=2.2e-14 Score=159.29 Aligned_cols=132 Identities=21% Similarity=0.246 Sum_probs=91.1
Q ss_pred CCCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHh-cCCCCCCC
Q 038019 641 SKPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIIS-GRASSDKS 719 (866)
Q Consensus 641 ~~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~t-g~~p~~~~ 719 (866)
...|++...+...++.|||.++....+.+........+++.|+|||.+..+.++.++|||||||++|||+| |+.|+...
T Consensus 240 kp~Nil~~~~~~~kl~DfG~s~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~il~el~t~g~~p~~~~ 319 (377)
T 3cbl_A 240 AARNCLVTEKNVLKISDFGMSREEADGVYAASGGLRQVPVKWTAPEALNYGRYSSESDVWSFGILLWETFSLGASPYPNL 319 (377)
T ss_dssp SGGGEEECTTCCEEECCGGGCEECTTSEEECCSSCCEEEGGGSCHHHHHHCEEEHHHHHHHHHHHHHHHHTTSCCSSTTS
T ss_pred CHHHEEEcCCCcEEECcCCCceecCCCceeecCCCCCCCcCcCCHhHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCC
Confidence 33467776677788999999987765432111111234678999999999999999999999999999999 99998754
Q ss_pred chhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhcC
Q 038019 720 LDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLAGD 787 (866)
Q Consensus 720 ~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~~~ 787 (866)
...+ ..+ ....+.. ....... ...+.+++..||+.+|++||||.+|++.|+..
T Consensus 320 ~~~~---~~~----~~~~~~~-----~~~~~~~---~~~l~~li~~cl~~dP~~Rps~~~i~~~L~~i 372 (377)
T 3cbl_A 320 SNQQ---TRE----FVEKGGR-----LPCPELC---PDAVFRLMEQCWAYEPGQRPSFSTIYQELQSI 372 (377)
T ss_dssp CHHH---HHH----HHHTTCC-----CCCCTTC---CHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred CHHH---HHH----HHHcCCC-----CCCCCCC---CHHHHHHHHHHcCCCchhCcCHHHHHHHHHHH
Confidence 4322 222 2222211 1111111 23455677799999999999999999999853
|
| >3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.43 E-value=3.7e-14 Score=155.35 Aligned_cols=126 Identities=16% Similarity=0.275 Sum_probs=78.7
Q ss_pred cccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeec-----------CCCCchhHHHHHHHHHHHHHhc
Q 038019 644 NIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMR-----------GHLTEKADVFSFGVVALEIISG 712 (866)
Q Consensus 644 ~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~-----------~~~t~ksDVySfGvvLlEl~tg 712 (866)
|++.. +...++.|||.++.+.............||++|+|||++.. +.++.++|||||||+++||+||
T Consensus 138 NIll~-~~~~kl~DFG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DiwslG~il~ell~g 216 (343)
T 3dbq_A 138 NFLIV-DGMLKLIDFGIANQMQPDTTSVVKDSQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYG 216 (343)
T ss_dssp GEEEE-TTEEEECCCSSSCCC------------CCCCSSCCHHHHHHCC-----------CCHHHHHHHHHHHHHHHHHS
T ss_pred eEEEE-CCcEEEeecccccccCcccccccCCCCcCCcCcCCHHHHhhccccccccccccCCCchhhHHHHHHHHHHHHhC
Confidence 55543 44578999999998876655555566789999999999864 7899999999999999999999
Q ss_pred CCCCCCCchhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 038019 713 RASSDKSLDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAM 783 (866)
Q Consensus 713 ~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~ 783 (866)
+.|+...... ............ ......... ..+.+++..|++.||++||||.||++.
T Consensus 217 ~~pf~~~~~~-----~~~~~~~~~~~~-----~~~~~~~~~---~~l~~li~~~L~~dp~~Rpt~~e~l~h 274 (343)
T 3dbq_A 217 KTPFQQIINQ-----ISKLHAIIDPNH-----EIEFPDIPE---KDLQDVLKCCLKRDPKQRISIPELLAH 274 (343)
T ss_dssp SCTTTTCCSH-----HHHHHHHHCTTS-----CCCCCCCSC---HHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred CCcchhhhhH-----HHHHHHHhcCCc-----ccCCcccCC---HHHHHHHHHHcCCChhHCCCHHHHHhC
Confidence 9999753221 111111111110 011111222 234556679999999999999999864
|
| >2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.42 E-value=5.2e-14 Score=166.08 Aligned_cols=136 Identities=18% Similarity=0.171 Sum_probs=92.3
Q ss_pred ccCCCCCcccCHHHHHHHhcCCccccccCCCCc-eeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHh-cCC
Q 038019 637 VGIGSKPNIFGYAELRSATKDFNRSNKLGEGGY-GPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIIS-GRA 714 (866)
Q Consensus 637 ~~~~~~~~~~~~~~~~~~~~dF~~~~~lg~g~~-g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~t-g~~ 714 (866)
+......|++...+...++.|||.++.++.+.. ........+|++|+|||++..+.++.++|||||||++|||+| |+.
T Consensus 459 HrDlkp~NILl~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~~~y~APE~~~~~~~~~~sDvwSlGv~l~ellt~G~~ 538 (613)
T 2ozo_A 459 HRNLAARNVLLVNRHYAKISDFGLSKALGADDSYYTARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQK 538 (613)
T ss_dssp CSCCSGGGEEEEETTEEEECCCSTTTTCC--------------CCTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCC
T ss_pred cCcCCHHHEEEcCCCcEEEeeccCcccccCCCceeeeccCCCCccceeCHhhhcCCCCCcHHHHHHHHHHHHHHHHCCCC
Confidence 333334477777777889999999998875432 111223346789999999999999999999999999999998 999
Q ss_pred CCCCCchhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhcC
Q 038019 715 SSDKSLDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLAGD 787 (866)
Q Consensus 715 p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~~~ 787 (866)
|+......+ +... +..+... .. +......+.+++..||+.+|++||+|.+|++.|+..
T Consensus 539 Pf~~~~~~~---~~~~----i~~~~~~-----~~---p~~~~~~l~~li~~cl~~dP~~RPs~~~l~~~L~~~ 596 (613)
T 2ozo_A 539 PYKKMKGPE---VMAF----IEQGKRM-----EC---PPECPPELYALMSDCWIYKWEDRPDFLTVEQRMRAC 596 (613)
T ss_dssp TTTTCCSHH---HHHH----HHTTCCC-----CC---CTTCCHHHHHHHHHTTCSSTTTSCCHHHHHHHHHHH
T ss_pred CCCCCCHHH---HHHH----HHcCCCC-----CC---CCcCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHH
Confidence 997654332 2222 2222111 11 111223466677799999999999999999999854
|
| >1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A | Back alignment and structure |
|---|
Probab=99.42 E-value=6.7e-14 Score=161.10 Aligned_cols=137 Identities=18% Similarity=0.165 Sum_probs=97.0
Q ss_pred ccCCCCCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHh-cCCC
Q 038019 637 VGIGSKPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIIS-GRAS 715 (866)
Q Consensus 637 ~~~~~~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~t-g~~p 715 (866)
|......|++...+...++.|||.++.+....+ ....+..+++.|+|||.+..+.++.|+|||||||++|||+| |+.|
T Consensus 341 HrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~~-~~~~~~~~~~~y~aPE~~~~~~~~~~sDvwSlG~~l~el~t~g~~p 419 (495)
T 1opk_A 341 HRNLAARNCLVGENHLVKVADFGLSRLMTGDTY-TAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSP 419 (495)
T ss_dssp CSCCSGGGEEECGGGCEEECCTTCEECCTTCCE-ECCTTCCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCS
T ss_pred cCCCChhhEEECCCCcEEEeecccceeccCCce-eecCCCcCCcceeCHhHHhcCCCCcHHhHHhHHHHHHHHHhCCCCC
Confidence 333334477777777889999999998764432 22334456789999999999999999999999999999999 9999
Q ss_pred CCCCchhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhcCcC
Q 038019 716 SDKSLDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLAGDIE 789 (866)
Q Consensus 716 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~~~~~ 789 (866)
+......+ +.+.+ ..+. .... +......+.+++..||+.+|++||+|.+|+++|+....
T Consensus 420 ~~~~~~~~---~~~~~----~~~~-----~~~~---~~~~~~~l~~li~~cl~~dP~~RPs~~el~~~L~~~~~ 478 (495)
T 1opk_A 420 YPGIDLSQ---VYELL----EKDY-----RMER---PEGCPEKVYELMRACWQWNPSDRPSFAEIHQAFETMFQ 478 (495)
T ss_dssp STTCCGGG---HHHHH----HTTC-----CCCC---CTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTSCS
T ss_pred CCCCCHHH---HHHHH----HcCC-----CCCC---CCCCCHHHHHHHHHHcCcChhHCcCHHHHHHHHHHHHh
Confidence 87544322 22222 1111 0111 11122345567779999999999999999999996543
|
| >3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.42 E-value=4.5e-14 Score=153.18 Aligned_cols=135 Identities=19% Similarity=0.231 Sum_probs=86.8
Q ss_pred CCCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHh-cCCCCCCC
Q 038019 641 SKPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIIS-GRASSDKS 719 (866)
Q Consensus 641 ~~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~t-g~~p~~~~ 719 (866)
...|++...+...++.|||.++.+..+.......+..+|+.|+|||.+....++.++|||||||+++||+| |+.|+...
T Consensus 164 kp~NIli~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~ 243 (323)
T 3qup_A 164 AARNCMLAEDMTVCVADFGLSRKIYSGDYYRQGCASKLPVKWLALESLADNLYTVHSDVWAFGVTMWEIMTRGQTPYAGI 243 (323)
T ss_dssp SGGGEEECTTSCEEECCCCC-----------------CCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTC
T ss_pred CcceEEEcCCCCEEEeeccccccccccccccccccccCcccccCchhhcCCCCCCccchhhHHHHHHHHHhCCCCCcccc
Confidence 33477777777788999999998877655444445567889999999999999999999999999999999 99998764
Q ss_pred chhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhcCcCC
Q 038019 720 LDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLAGDIEV 790 (866)
Q Consensus 720 ~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~~~~~~ 790 (866)
...+ +...+. .+.. +.. +......+.+++..|++.||++||++.++++.|+.....
T Consensus 244 ~~~~---~~~~~~----~~~~-----~~~---~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~l~~~l~~ 299 (323)
T 3qup_A 244 ENAE---IYNYLI----GGNR-----LKQ---PPECMEEVYDLMYQCWSADPKQRPSFTCLRMELENILGH 299 (323)
T ss_dssp CGGG---HHHHHH----TTCC-----CCC---CTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHHHC
T ss_pred ChHH---HHHHHh----cCCC-----CCC---CCccCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHH
Confidence 4322 222111 1110 011 111123456677799999999999999999999975543
|
| >2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.42 E-value=5.2e-14 Score=154.30 Aligned_cols=138 Identities=12% Similarity=0.133 Sum_probs=90.1
Q ss_pred CcccCHHHH--HHHhcCCccccccCCCCceeEE-----EeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCC
Q 038019 643 PNIFGYAEL--RSATKDFNRSNKLGEGGYGPVY-----KVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRAS 715 (866)
Q Consensus 643 ~~~~~~~~~--~~~~~dF~~~~~lg~g~~g~vy-----~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p 715 (866)
.|++...+. ..++.|||.++.+..++....+ ....||..|+|||.+.+..++.++|||||||+++||+||+.|
T Consensus 180 ~NIll~~~~~~~~kL~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~p 259 (345)
T 2v62_A 180 ANLLLGYKNPDQVYLADYGLSYRYCPNGNHKQYQENPRKGHNGTIEFTSLDAHKGVALSRRSDVEILGYCMLRWLCGKLP 259 (345)
T ss_dssp GGEEEESSSTTSEEECCCTTCEESSGGGCCCCCCCCGGGCSCSCTTTCCHHHHHTCCCCHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHEEEccCCCCcEEEEeCCCceecccccccccchhccccccCCCccccCHHHhcCCCCCchhhHHHHHHHHHHHHhCCCC
Confidence 356655444 6778999999887654322222 234799999999999999999999999999999999999999
Q ss_pred CCCCchhhhhcHHHHHHHHhhcCCcccccCCccccc--CHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhcC
Q 038019 716 SDKSLDMEKIYLLEWAWNLHENNQSFGLVDPTLTEF--NDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLAGD 787 (866)
Q Consensus 716 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~--~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~~~ 787 (866)
+....... . ............ +.+.+... .......+.++...|++.+|++||++.+|++.|+..
T Consensus 260 f~~~~~~~-~-~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~L~~~ 326 (345)
T 2v62_A 260 WEQNLKDP-V-AVQTAKTNLLDE-----LPQSVLKWAPSGSSCCEIAQFLVCAHSLAYDEKPNYQALKKILNPH 326 (345)
T ss_dssp TGGGTTCH-H-HHHHHHHHHHHT-----TTHHHHHHSCTTSCCHHHHHHHHHHHTCCTTCCCCHHHHHHHHCTT
T ss_pred cccccccc-H-HHHHHHHhhccc-----ccHHHHhhccccccHHHHHHHHHHHhhcCcccCCCHHHHHHHHhcc
Confidence 96422111 1 111111111100 01100000 001122455666799999999999999999999853
|
| >3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A | Back alignment and structure |
|---|
Probab=99.42 E-value=5.9e-14 Score=162.88 Aligned_cols=130 Identities=16% Similarity=0.117 Sum_probs=88.6
Q ss_pred hhccCCCCCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeec-CCCCchhHHHHHHHHHHHHHhcC
Q 038019 635 VLVGIGSKPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMR-GHLTEKADVFSFGVVALEIISGR 713 (866)
Q Consensus 635 ~~~~~~~~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~-~~~t~ksDVySfGvvLlEl~tg~ 713 (866)
++|+....-|++.+.+...++.|||+++.+..+.. ...+||+.|||||.+.. ..|+.++||||+||+|+||+||+
T Consensus 313 IiHRDLKPeNILld~~G~vKL~DFGlA~~~~~~~~----~t~~GTp~YmAPEvl~~~~~y~~~vDiWSLGvilYEmLtG~ 388 (689)
T 3v5w_A 313 VVYRDLKPANILLDEHGHVRISDLGLACDFSKKKP----HASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGH 388 (689)
T ss_dssp EECCCCSGGGEEECTTSCEEECCCTTCEECSSCCC----CSCCSCGGGCCHHHHSTTCCCCTHHHHHHHHHHHHHHHHSS
T ss_pred ccccCCchHHeEEeCCCCEEecccceeeecCCCCC----CCccCCcCccCHHHHhCCCCCCcHHHHHHHHHHHHHHHhCC
Confidence 33443344488888888899999999998876542 23579999999999975 47999999999999999999999
Q ss_pred CCCCCCchhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCC-----HHHHH
Q 038019 714 ASSDKSLDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPP-----MSRVV 781 (866)
Q Consensus 714 ~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPs-----m~~V~ 781 (866)
.||......+...+...+. .. ++.+......++ .++...|++.||++|++ +.||.
T Consensus 389 ~PF~~~~~~~~~~i~~~i~----~~------~~~~p~~~S~~a---~dLI~~lL~~dP~~Rl~~~~~ga~ei~ 448 (689)
T 3v5w_A 389 SPFRQHKTKDKHEIDRMTL----TM------AVELPDSFSPEL---RSLLEGLLQRDVNRRLGCLGRGAQEVK 448 (689)
T ss_dssp CTTCGGGCCCHHHHHHHHH----HC------CCCCCTTSCHHH---HHHHHHHTCSCGGGCTTCSSSTHHHHT
T ss_pred CCCCCCChHHHHHHHHhhc----CC------CCCCCccCCHHH---HHHHHHHccCCHhHCCCCCCCCHHHHh
Confidence 9997432222111111111 11 111112122333 44556999999999998 56665
|
| >2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=2.8e-14 Score=159.15 Aligned_cols=126 Identities=17% Similarity=0.291 Sum_probs=80.7
Q ss_pred cccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeec-----------CCCCchhHHHHHHHHHHHHHhc
Q 038019 644 NIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMR-----------GHLTEKADVFSFGVVALEIISG 712 (866)
Q Consensus 644 ~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~-----------~~~t~ksDVySfGvvLlEl~tg 712 (866)
|++. .+...++.|||.++.+..+..........||+.|+|||++.. +.++.++|||||||+++||+||
T Consensus 185 NIll-~~~~~kl~DFG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DiwSlGvil~ell~G 263 (390)
T 2zmd_A 185 NFLI-VDGMLKLIDFGIANQMQPDTTSVVKDSQVGAVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYG 263 (390)
T ss_dssp GEEE-SSSCEEECCCSSSCCC---------CCSCCCGGGCCHHHHHCC------------CCHHHHHHHHHHHHHHHHHS
T ss_pred HEEE-ECCeEEEEecCccccccCCCccccCCCCCcCCCccChHHhhhccccccccccccCCCChhhHHHHHHHHHHHHHC
Confidence 5554 345678999999998876554444455679999999998864 4799999999999999999999
Q ss_pred CCCCCCCchhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 038019 713 RASSDKSLDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAM 783 (866)
Q Consensus 713 ~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~ 783 (866)
+.|+...... ............ .........+ .+.+++..|++.||++||+|.||++.
T Consensus 264 ~~Pf~~~~~~-----~~~~~~~~~~~~-----~~~~~~~~~~---~~~~li~~~L~~dP~~Rps~~ell~h 321 (390)
T 2zmd_A 264 KTPFQQIINQ-----ISKLHAIIDPNH-----EIEFPDIPEK---DLQDVLKCCLKRDPKQRISIPELLAH 321 (390)
T ss_dssp SCTTTTCCCH-----HHHHHHHHCTTS-----CCCCCCCSCH---HHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred CCcchhhhHH-----HHHHHHHhCccc-----cCCCCccchH---HHHHHHHHHcccChhhCCCHHHHhhC
Confidence 9999753221 111122111110 1111122222 34556679999999999999999864
|
| >2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.41 E-value=6e-14 Score=151.17 Aligned_cols=130 Identities=25% Similarity=0.389 Sum_probs=84.2
Q ss_pred CCcccCHHHHH-HHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCCc
Q 038019 642 KPNIFGYAELR-SATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSL 720 (866)
Q Consensus 642 ~~~~~~~~~~~-~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~ 720 (866)
..|++...+.. .++.|||.+..+... .....||.+|+|||.+.+..++.++|||||||+++||+||+.|++...
T Consensus 133 p~NIll~~~~~~~kl~Dfg~~~~~~~~-----~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~ 207 (307)
T 2eva_A 133 PPNLLLVAGGTVLKICDFGTACDIQTH-----MTNNKGSAAWMAPEVFEGSNYSEKCDVFSWGIILWEVITRRKPFDEIG 207 (307)
T ss_dssp GGGEEEETTTTEEEECCCCC-----------------CCTTSSCHHHHTCCCCCTHHHHHHHHHHHHHHHHTCCTTTTTC
T ss_pred hhHEEEeCCCCEEEEcccccccccccc-----cccCCCCCceEChhhhCCCCCCcHHHHHHHHHHHHHHHHCCCCchhhC
Confidence 34666555444 578999998776532 223468999999999999999999999999999999999999997533
Q ss_pred hhhhhcHHHHHHHHhhcCCcccccCCcc-cccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhcCcCC
Q 038019 721 DMEKIYLLEWAWNLHENNQSFGLVDPTL-TEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLAGDIEV 790 (866)
Q Consensus 721 ~~~~~~l~~~~~~~~~~~~~~~~~d~~l-~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~~~~~~ 790 (866)
... . ...|.. . .+. .+.. ...+ ..+.+++..|++.+|++||+|.||+++|+.....
T Consensus 208 ~~~-~-~~~~~~--~-~~~-----~~~~~~~~~----~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~~~ 264 (307)
T 2eva_A 208 GPA-F-RIMWAV--H-NGT-----RPPLIKNLP----KPIESLMTRCWSKDPSQRPSMEEIVKIMTHLMRY 264 (307)
T ss_dssp SSH-H-HHHHHH--H-TTC-----CCCCBTTCC----HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHGGG
T ss_pred ccH-H-HHHHHH--h-cCC-----CCCcccccC----HHHHHHHHHHhcCChhhCcCHHHHHHHHHHHHHh
Confidence 211 1 111111 1 111 1111 1222 2345567799999999999999999999865544
|
| >1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7 | Back alignment and structure |
|---|
Probab=99.41 E-value=5.7e-14 Score=153.87 Aligned_cols=140 Identities=17% Similarity=0.153 Sum_probs=98.3
Q ss_pred ccCCCCCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHh-cCCC
Q 038019 637 VGIGSKPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIIS-GRAS 715 (866)
Q Consensus 637 ~~~~~~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~t-g~~p 715 (866)
|......|++...+...++.|||.+..+.............||++|+|||.+.++.++.++|||||||+++||+| |+.|
T Consensus 195 H~Dikp~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p 274 (344)
T 1rjb_A 195 HRDLAARNVLVTHGKVVKICDFGLARDIMSDSNYVVRGNARLPVKWMAPESLFEGIYTIKSDVWSYGILLWEIFSLGVNP 274 (344)
T ss_dssp ETTCSGGGEEEETTTEEEECCCGGGSCGGGCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCS
T ss_pred cCCCChhhEEEcCCCcEEeCCCccCcccccCccceeccCccCccCccCHHHhccCCCChhHhHHHHHHHHHHHHcCCCCC
Confidence 333333477777777788999999998876654444445567899999999999999999999999999999998 9999
Q ss_pred CCCCchhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhcCcCC
Q 038019 716 SDKSLDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLAGDIEV 790 (866)
Q Consensus 716 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~~~~~~ 790 (866)
+....... .+. .....+. .+...... ...+.+++..|++.||++||++.||++.|+.....
T Consensus 275 ~~~~~~~~--~~~----~~~~~~~-----~~~~~~~~---~~~l~~li~~~l~~dp~~Rps~~~l~~~l~~~~~~ 335 (344)
T 1rjb_A 275 YPGIPVDA--NFY----KLIQNGF-----KMDQPFYA---TEEIYIIMQSCWAFDSRKRPSFPNLTSFLGCQLAD 335 (344)
T ss_dssp STTCCCSH--HHH----HHHHTTC-----CCCCCTTC---CHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHC--
T ss_pred cccCCcHH--HHH----HHHhcCC-----CCCCCCCC---CHHHHHHHHHHcCCCchhCcCHHHHHHHHHHHHHH
Confidence 87543222 111 1122211 11111111 23455566799999999999999999999965543
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
Probab=99.41 E-value=1.1e-12 Score=127.89 Aligned_cols=107 Identities=19% Similarity=0.290 Sum_probs=75.2
Q ss_pred CCEEEccCCCCCCCCCccccCCCCcCEEeccCCcCCCCCCccccCCCCCCEeeccCCCCCCCCchhhcCCCCccEEEeec
Q 038019 91 LTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKELTVLAFGTNNFSGALPPELGNLAKLEQLYIDS 170 (866)
Q Consensus 91 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~ 170 (866)
.++|++++|.++. +|..+. ++|++|+|++|+|++..|..|.++++|++|+|++|++++..+..|..+++|++|+|++
T Consensus 11 ~~~l~~s~n~l~~-ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLAS-VPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcCc-cCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 4678888888763 565443 6777788888777777777777777777777777777766665667777777777777
Q ss_pred CCCCCCChhhhhcCcCCCEEEecCCCCCCC
Q 038019 171 CGAGGEIPSTFAKLRNMQTLWASDNPFTGK 200 (866)
Q Consensus 171 n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ 200 (866)
|++++..+..|..+++|++|+|++|.++..
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 777666666666666666666666666543
|
| >2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 | Back alignment and structure |
|---|
Probab=99.41 E-value=3.8e-14 Score=164.71 Aligned_cols=138 Identities=22% Similarity=0.277 Sum_probs=97.1
Q ss_pred ccCCCCCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHh-cCCC
Q 038019 637 VGIGSKPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIIS-GRAS 715 (866)
Q Consensus 637 ~~~~~~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~t-g~~p 715 (866)
|......|++..++...++.|||.++.+....+ ....+..++..|+|||.+..+.++.|+|||||||++|||+| |+.|
T Consensus 386 HrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~~-~~~~~~~~~~~y~aPE~~~~~~~~~~sDvwSlGv~l~el~t~g~~P 464 (535)
T 2h8h_A 386 HRDLRAANILVGENLVCKVADFGLARLIEDNEY-TARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVP 464 (535)
T ss_dssp CSCCSGGGEEECGGGCEEECCTTSTTTCCCHHH-HTTCSTTSCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHTTTTCCS
T ss_pred CCCCCHhhEEEcCCCcEEEcccccceecCCCce-ecccCCcCcccccCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCC
Confidence 333334477777777889999999998764322 11223457789999999999999999999999999999999 9999
Q ss_pred CCCCchhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhcCcCC
Q 038019 716 SDKSLDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLAGDIEV 790 (866)
Q Consensus 716 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~~~~~~ 790 (866)
+......+ +.+. +..+.. ..... .....+.+++..||+.+|++||+|.+|+++|+.....
T Consensus 465 ~~~~~~~~---~~~~----i~~~~~-----~~~~~---~~~~~l~~li~~cl~~dP~~RPt~~~l~~~L~~~~~~ 524 (535)
T 2h8h_A 465 YPGMVNRE---VLDQ----VERGYR-----MPCPP---ECPESLHDLMCQCWRKEPEERPTFEYLQAFLEDYFTS 524 (535)
T ss_dssp STTCCHHH---HHHH----HHTTCC-----CCCCT---TCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTSSCC
T ss_pred CCCCCHHH---HHHH----HHcCCC-----CCCCC---CCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHhhc
Confidence 87544322 2221 222211 01111 1123455677799999999999999999999976544
|
| >3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.40 E-value=1.9e-14 Score=159.16 Aligned_cols=133 Identities=22% Similarity=0.257 Sum_probs=90.8
Q ss_pred CcccCH---HHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHh-cCCCCCC
Q 038019 643 PNIFGY---AELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIIS-GRASSDK 718 (866)
Q Consensus 643 ~~~~~~---~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~t-g~~p~~~ 718 (866)
.|++.. .....++.|||.++.+...++........||+.|+|||.+..+.++.++|||||||+++||+| |+.|+..
T Consensus 210 ~NIll~~~~~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DvwslG~il~ellt~g~~pf~~ 289 (367)
T 3l9p_A 210 RNCLLTCPGPGRVAKIGDFGMARDIYRAGYYRKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGYMPYPS 289 (367)
T ss_dssp GGEEESCSSTTCCEEECCCHHHHHHHHHSSCTTCCGGGSCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTT
T ss_pred hhEEEecCCCCceEEECCCccccccccccccccCCCcCCcccEECHHHhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCC
Confidence 355554 233467899999887654333222223467899999999999999999999999999999998 9999875
Q ss_pred CchhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhcCcCC
Q 038019 719 SLDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLAGDIEV 790 (866)
Q Consensus 719 ~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~~~~~~ 790 (866)
....+ +.+.+ ..+.. +.... .....+.+++..|++.+|++||++.||++.|+.....
T Consensus 290 ~~~~~---~~~~i----~~~~~-----~~~~~---~~~~~l~~li~~~l~~dP~~Rps~~eil~~l~~~~~~ 346 (367)
T 3l9p_A 290 KSNQE---VLEFV----TSGGR-----MDPPK---NCPGPVYRIMTQCWQHQPEDRPNFAIILERIEYCTQD 346 (367)
T ss_dssp CCHHH---HHHHH----HTTCC-----CCCCT---TCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHC
T ss_pred CCHHH---HHHHH----HcCCC-----CCCCc---cCCHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHhhC
Confidence 43322 22222 11111 11111 1122355677799999999999999999999865443
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.40 E-value=1.2e-12 Score=128.18 Aligned_cols=106 Identities=20% Similarity=0.244 Sum_probs=76.3
Q ss_pred EEEEEcccCcCCCCCcccCCCCCCCEEEccCCCCCCCCCccccCCCCcCEEeccCCcCCCCCCccccCCCCCCEeeccCC
Q 038019 68 TKLRVYGLNKKGVIPEELVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKELTVLAFGTN 147 (866)
Q Consensus 68 ~~L~l~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N 147 (866)
+.++++++.++ .+|..+. ++|++|+|++|+|++..|..|.++++|++|+|++|+|++..+..|.++++|++|+|++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 56777777774 5665554 67888888888887777777778888888888888877655556677777777777777
Q ss_pred CCCCCCchhhcCCCCccEEEeecCCCCCC
Q 038019 148 NFSGALPPELGNLAKLEQLYIDSCGAGGE 176 (866)
Q Consensus 148 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ 176 (866)
++++..+..|..+++|++|+|++|.+...
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c~ 120 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCE 120 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred ccceeCHHHhccccCCCEEEeCCCCcccc
Confidence 77765555577777777777777766543
|
| >3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.40 E-value=4.3e-14 Score=152.43 Aligned_cols=136 Identities=18% Similarity=0.175 Sum_probs=91.8
Q ss_pred ccCCCCCcccCHHHHHHHhcCCccccccCCCCceeE------------EEeecCCCCccCceeeecCCCCchhHHHHHHH
Q 038019 637 VGIGSKPNIFGYAELRSATKDFNRSNKLGEGGYGPV------------YKVTANSYGYLAPEYAMRGHLTEKADVFSFGV 704 (866)
Q Consensus 637 ~~~~~~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~v------------y~~~~gt~gY~aPE~~~~~~~t~ksDVySfGv 704 (866)
|......|++...+...++.|||.++.+........ .....||++|+|||.+.+..++.++|||||||
T Consensus 131 H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~ 210 (310)
T 3s95_A 131 HRDLNSHNCLVRENKNVVVADFGLARLMVDEKTQPEGLRSLKKPDRKKRYTVVGNPYWMAPEMINGRSYDEKVDVFSFGI 210 (310)
T ss_dssp CSCCSTTSEEECTTSCEEECCCTTCEECC--------------------CCCCSCGGGCCHHHHTTCCCCTHHHHHHHHH
T ss_pred CCCCCcCeEEECCCCCEEEeecccceecccccccccccccccccccccccccCCCcceeCHHHhcCCCCCcHHHHHHHHH
Confidence 333344477777777788999999988765432211 01346999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCCCchhhh---hcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHH
Q 038019 705 VALEIISGRASSDKSLDMEK---IYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVV 781 (866)
Q Consensus 705 vLlEl~tg~~p~~~~~~~~~---~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~ 781 (866)
+++||++|+.|+........ .....+... .. +......+.+++..|++.||++||+|.||+
T Consensus 211 ~l~el~~g~~~~~~~~~~~~~~~~~~~~~~~~-------------~~---~~~~~~~l~~li~~~l~~dP~~Rps~~~l~ 274 (310)
T 3s95_A 211 VLCEIIGRVNADPDYLPRTMDFGLNVRGFLDR-------------YC---PPNCPPSFFPITVRCCDLDPEKRPSFVKLE 274 (310)
T ss_dssp HHHHHHHTCCSSTTTSCBCTTSSBCHHHHHHH-------------TC---CTTCCTTHHHHHHHHTCSSGGGSCCHHHHH
T ss_pred HHHHHhcCCCCCcchhhhHHHHhhhhhccccc-------------cC---CCCCCHHHHHHHHHHccCChhhCcCHHHHH
Confidence 99999999998764332111 111111110 00 011112355677799999999999999999
Q ss_pred HHHhcCc
Q 038019 782 AMLAGDI 788 (866)
Q Consensus 782 ~~L~~~~ 788 (866)
+.|+...
T Consensus 275 ~~L~~l~ 281 (310)
T 3s95_A 275 HWLETLR 281 (310)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998543
|
| >3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7 | Back alignment and structure |
|---|
Probab=99.40 E-value=6.4e-14 Score=155.10 Aligned_cols=134 Identities=20% Similarity=0.312 Sum_probs=82.8
Q ss_pred CCCcccCHHHHHHHhcCCccccccCCCCceeE--EEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHh-cCCCCC
Q 038019 641 SKPNIFGYAELRSATKDFNRSNKLGEGGYGPV--YKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIIS-GRASSD 717 (866)
Q Consensus 641 ~~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~v--y~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~t-g~~p~~ 717 (866)
...|++...+...++.|||.++.+....+... ..+..+|++|+|||.+..+.++.++|||||||++|||+| |+.|+.
T Consensus 219 kp~NIll~~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwSlG~il~ellt~~~~p~~ 298 (373)
T 3c1x_A 219 AARNCMLDEKFTVKVADFGLARDMYDKEFDSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYP 298 (373)
T ss_dssp CGGGEEECTTCCEEECCC---------------------CCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCT
T ss_pred chheEEECCCCCEEEeeccccccccccccccccccCCCCCcccccChHHhcCCCCCcHHHHHHHHHHHHHHHhCcCCCCC
Confidence 33477777777788999999988765543322 234567889999999999999999999999999999999 666765
Q ss_pred CCchhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhcCcC
Q 038019 718 KSLDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLAGDIE 789 (866)
Q Consensus 718 ~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~~~~~ 789 (866)
..... .+...+. .+.. ...| ... ...+.+++..||+.+|++||++.||++.|+....
T Consensus 299 ~~~~~---~~~~~~~----~~~~--~~~p---~~~---~~~l~~li~~cl~~dp~~RPs~~ell~~L~~i~~ 355 (373)
T 3c1x_A 299 DVNTF---DITVYLL----QGRR--LLQP---EYC---PDPLYEVMLKCWHPKAEMRPSFSELVSRISAIFS 355 (373)
T ss_dssp TSCSS---CHHHHHH----TTCC--CCCC---TTC---CHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred CCCHH---HHHHHHH----cCCC--CCCC---CCC---CHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHH
Confidence 43322 2222221 1111 1111 111 2245566779999999999999999999986543
|
| >1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=1e-13 Score=149.56 Aligned_cols=133 Identities=18% Similarity=0.249 Sum_probs=94.6
Q ss_pred CCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHh-cCCCCCCCc
Q 038019 642 KPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIIS-GRASSDKSL 720 (866)
Q Consensus 642 ~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~t-g~~p~~~~~ 720 (866)
..|++...+...++.|||.+..++............||++|+|||.+....++.++||||||++++||+| |+.|+....
T Consensus 173 p~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~ 252 (313)
T 1t46_A 173 ARNILLTHGRITKICDFGLARDIKNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPGMP 252 (313)
T ss_dssp GGGEEEETTTEEEECCCGGGSCTTSCTTSEECSSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCC
T ss_pred cceEEEcCCCCEEEccccccccccccccceeccCCCCcceeeChHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCCCccc
Confidence 3467766667778999999998876654333334467889999999999999999999999999999999 999987543
Q ss_pred hhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhcCc
Q 038019 721 DMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLAGDI 788 (866)
Q Consensus 721 ~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~~~~ 788 (866)
.... +. .....+ ..+...... ...+.+++..|++.||++||++.||+++|+..+
T Consensus 253 ~~~~--~~----~~~~~~-----~~~~~~~~~---~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~ 306 (313)
T 1t46_A 253 VDSK--FY----KMIKEG-----FRMLSPEHA---PAEMYDIMKTCWDADPLKRPTFKQIVQLIEKQI 306 (313)
T ss_dssp SSHH--HH----HHHHHT-----CCCCCCTTS---CHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred chhH--HH----HHhccC-----CCCCCcccC---CHHHHHHHHHHcCCCchhCcCHHHHHHHHHHHH
Confidence 2211 11 111111 111111111 234555667999999999999999999998654
|
| >2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=8.9e-14 Score=151.57 Aligned_cols=137 Identities=18% Similarity=0.214 Sum_probs=96.1
Q ss_pred ccCCCCCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHh-cCCC
Q 038019 637 VGIGSKPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIIS-GRAS 715 (866)
Q Consensus 637 ~~~~~~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~t-g~~p 715 (866)
|......|++...+...++.|||.+..+.............||++|+|||.+.+..++.++|||||||+++||+| |+.|
T Consensus 187 H~Dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p 266 (333)
T 2i1m_A 187 HRDVAARNVLLTNGHVAKIGDFGLARDIMNDSNYIVKGNARLPVKWMAPESIFDCVYTVQSDVWSYGILLWEIFSLGLNP 266 (333)
T ss_dssp CSCCSGGGCEEEGGGEEEBCCCGGGCCGGGCTTSEECSSCEECGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCS
T ss_pred cCCcccceEEECCCCeEEECccccccccccccceeecCCCCCCccccCHHHhccCCCChHHHHHHHHHHHHHHHcCCCCC
Confidence 333333477777777788999999998876544333444567889999999999999999999999999999999 9999
Q ss_pred CCCCchhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhcC
Q 038019 716 SDKSLDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLAGD 787 (866)
Q Consensus 716 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~~~ 787 (866)
+....... .+.. ....+. .+....... ..+.+++..|++.+|++||++.||++.|+..
T Consensus 267 ~~~~~~~~--~~~~----~~~~~~-----~~~~~~~~~---~~l~~li~~~l~~~p~~Rps~~~l~~~L~~~ 324 (333)
T 2i1m_A 267 YPGILVNS--KFYK----LVKDGY-----QMAQPAFAP---KNIYSIMQACWALEPTHRPTFQQICSFLQEQ 324 (333)
T ss_dssp STTCCSSH--HHHH----HHHHTC-----CCCCCTTCC---HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred CcccchhH--HHHH----HHhcCC-----CCCCCCCCC---HHHHHHHHHHhccChhhCcCHHHHHHHHHHH
Confidence 87543222 1111 111111 111111112 3455667799999999999999999999853
|
| >4fl3_A Tyrosine-protein kinase SYK; transferase; HET: ANP; 1.90A {Homo sapiens} PDB: 4fl2_A* 1a81_A* 1csy_A* 1csz_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=7.5e-14 Score=165.19 Aligned_cols=135 Identities=20% Similarity=0.174 Sum_probs=92.0
Q ss_pred ccCCCCCcccCHHHHHHHhcCCccccccCCCC-ceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHh-cCC
Q 038019 637 VGIGSKPNIFGYAELRSATKDFNRSNKLGEGG-YGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIIS-GRA 714 (866)
Q Consensus 637 ~~~~~~~~~~~~~~~~~~~~dF~~~~~lg~g~-~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~t-g~~ 714 (866)
|......|++...+...++.|||.++.+..+. +........+|++|+|||++....++.|+|||||||+++||+| |+.
T Consensus 492 HrDLkp~NILl~~~~~~kL~DFGla~~~~~~~~~~~~~~~~~~t~~y~APE~~~~~~~~~~sDvwSlGv~l~ellt~G~~ 571 (635)
T 4fl3_A 492 HRDLAARNVLLVTQHYAKISDFGLSKALRADENYYKAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQK 571 (635)
T ss_dssp CSCCSGGGEEEEETTEEEECCTTHHHHTTC-------------CGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCC
T ss_pred CCCCChHhEEEeCCCCEEEEEcCCccccccCccccccccCCCCceeeeChhhhcCCCCCcHHHHHHHHHHHHHHHhCCCC
Confidence 33334447777777788999999999886543 1222233457889999999999999999999999999999999 999
Q ss_pred CCCCCchhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhc
Q 038019 715 SSDKSLDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLAG 786 (866)
Q Consensus 715 p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~~ 786 (866)
|+......+ + ...+..+.. +... ......+.+++..||+.||++||+|.+|+++|+.
T Consensus 572 Pf~~~~~~~---~----~~~i~~~~~-----~~~p---~~~~~~l~~li~~cl~~dP~~RPs~~~l~~~L~~ 628 (635)
T 4fl3_A 572 PYRGMKGSE---V----TAMLEKGER-----MGCP---AGCPREMYDLMNLCWTYDVENRPGFAAVELRLRN 628 (635)
T ss_dssp SSTTCCHHH---H----HHHHHTTCC-----CCCC---TTCCHHHHHHHHHHTCSSTTTSCCHHHHHHHHHH
T ss_pred CCCCCCHHH---H----HHHHHcCCC-----CCCC---CCCCHHHHHHHHHHcCCCHhHCcCHHHHHHHHHH
Confidence 997654322 1 222222211 1111 1122345667779999999999999999999985
|
| >3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 4e4m_A* 4f08_A* 4f09_A* 3q32_A* 3rvg_A* 4hge_A* 3tjc_A* 3tjd_A* 4bbe_A* 4bbf_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* ... | Back alignment and structure |
|---|
Probab=99.39 E-value=1.1e-13 Score=147.99 Aligned_cols=139 Identities=19% Similarity=0.151 Sum_probs=88.0
Q ss_pred CCCcccCHHHHHHHhcCCccccccCCCCc-eeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCC
Q 038019 641 SKPNIFGYAELRSATKDFNRSNKLGEGGY-GPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKS 719 (866)
Q Consensus 641 ~~~~~~~~~~~~~~~~dF~~~~~lg~g~~-g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~ 719 (866)
...|++...+...++.|||.++.++.... ........+|..|+|||.+....++.++||||||++++||+||+.|+...
T Consensus 141 kp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~~~~~~ 220 (295)
T 3ugc_A 141 ATRNILVENENRVKIGDFGLTKVLPQDKEFFKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSP 220 (295)
T ss_dssp SGGGEEEEETTEEEECCCCSCC-------------CTTCGGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHHTTCTTCSH
T ss_pred CHhhEEEcCCCeEEEccCcccccccCCcceeeeccCCCCccceeCcHHhcCCCCChHHHHHHHHHHHHHHHhcccccCCC
Confidence 33477777777788999999998865432 12222335777899999999999999999999999999999999987642
Q ss_pred chhh---------hhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhcC
Q 038019 720 LDME---------KIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLAGD 787 (866)
Q Consensus 720 ~~~~---------~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~~~ 787 (866)
.... ......++......+.. +.. +......+.+++..||+.+|++|||+.||+++|+..
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~---~~~~~~~l~~li~~~l~~dp~~Rps~~el~~~L~~l 289 (295)
T 3ugc_A 221 PAEFMRMIGNDKQGQMIVFHLIELLKNNGR-----LPR---PDGCPDEIYMIMTECWNNNVNQRPSFRDLALRVDQI 289 (295)
T ss_dssp HHHHHHHHCTTCCTHHHHHHHHHHHHTTCC-----CCC---CTTCCHHHHHHHHHHSCSSGGGSCCHHHHHHHHHHH
T ss_pred hHHHHhhhcCccccchhHHHHHHHHhccCc-----CCC---CcCcCHHHHHHHHHHcCCChhhCCCHHHHHHHHHHH
Confidence 2110 00111122222222111 111 111223455677799999999999999999999854
|
| >3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=1.2e-13 Score=149.08 Aligned_cols=133 Identities=21% Similarity=0.280 Sum_probs=86.3
Q ss_pred CCCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHh-cCCCCCCC
Q 038019 641 SKPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIIS-GRASSDKS 719 (866)
Q Consensus 641 ~~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~t-g~~p~~~~ 719 (866)
...|++...+...++.|||.++.+..+..........++..|+|||......++.++||||||++++||+| |+.|+...
T Consensus 174 kp~NIli~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~ 253 (313)
T 3brb_A 174 AARNCMLRDDMTVCVADFGLSKKIYSGDYYRQGRIAKMPVKWIAIESLADRVYTSKSDVWAFGVTMWEIATRGMTPYPGV 253 (313)
T ss_dssp SGGGEEECTTSCEEECSCSCC----------------CCGGGSCHHHHHSSCCCHHHHHHHHHHHHHHHHTTSCCSSTTC
T ss_pred CcceEEEcCCCcEEEeecCcceecccccccCcccccCCCccccCchhhcCCCccchhhhHHHHHHHHHHHhcCCCCCccC
Confidence 33467777777788999999988876554333334467889999999999999999999999999999999 88888754
Q ss_pred chhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhcCc
Q 038019 720 LDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLAGDI 788 (866)
Q Consensus 720 ~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~~~~ 788 (866)
...+ +...+.. +. .+.... .....+.+++..|++.+|++||++.+|++.|+...
T Consensus 254 ~~~~---~~~~~~~----~~-----~~~~~~---~~~~~l~~li~~~l~~dp~~Rps~~~l~~~L~~l~ 307 (313)
T 3brb_A 254 QNHE---MYDYLLH----GH-----RLKQPE---DCLDELYEIMYSCWRTDPLDRPTFSVLRLQLEKLL 307 (313)
T ss_dssp CGGG---HHHHHHT----TC-----CCCCBT---TCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHH
T ss_pred CHHH---HHHHHHc----CC-----CCCCCc---cccHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHH
Confidence 3322 2222211 11 011111 11234556677999999999999999999998654
|
| >3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.39 E-value=1.1e-13 Score=151.15 Aligned_cols=151 Identities=14% Similarity=0.086 Sum_probs=96.3
Q ss_pred hccCCCCCcccCHHHHHHHhcCCccccccCCCCc------eeEEEeecCCCCccCceeeec-------CCCCchhHHHHH
Q 038019 636 LVGIGSKPNIFGYAELRSATKDFNRSNKLGEGGY------GPVYKVTANSYGYLAPEYAMR-------GHLTEKADVFSF 702 (866)
Q Consensus 636 ~~~~~~~~~~~~~~~~~~~~~dF~~~~~lg~g~~------g~vy~~~~gt~gY~aPE~~~~-------~~~t~ksDVySf 702 (866)
.+......|++...+...++.|||.+..+..... ........||..|+|||.+.+ ..++.++|||||
T Consensus 142 vH~Dikp~Nill~~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~Diwsl 221 (336)
T 3g2f_A 142 SHRDLNSRNVLVKNDGTCVISDFGLSMRLTGNRLVRPGEEDNAAISEVGTIRYMAPEVLEGAVNLRDXESALKQVDMYAL 221 (336)
T ss_dssp ECSSCSGGGEEECTTSCEEECCCTTCEECSSSSCC---------CCTTSCGGGCCHHHHTTCCCGGGHHHHHHHHHHHHH
T ss_pred eecccccceEEEcCCCcEEEeeccceeecccccccCccccccccccCCCccceeCchhhcCCcccccccccccccchHHH
Confidence 3333344477777777888999999988764332 111223469999999999876 567789999999
Q ss_pred HHHHHHHHhcCCCCCCCchhhhh-c----------HHHHHHHHhhcCCcccccCCcccc---cCHHHHHHHHHHHHHccC
Q 038019 703 GVVALEIISGRASSDKSLDMEKI-Y----------LLEWAWNLHENNQSFGLVDPTLTE---FNDKEALRVIGVALLCTQ 768 (866)
Q Consensus 703 GvvLlEl~tg~~p~~~~~~~~~~-~----------l~~~~~~~~~~~~~~~~~d~~l~~---~~~~~~~~~~~la~~C~~ 768 (866)
||+++||+||+.|+......... . ..+......... ...+.+.+ ........+.+++..|++
T Consensus 222 G~il~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~~li~~cl~ 297 (336)
T 3g2f_A 222 GLIYWEIFMRCTDLFPGESVPEYQMAFQTEVGNHPTFEDMQVLVSRE----KQRPKFPEAWKENSLAVRSLKETIEDCWD 297 (336)
T ss_dssp HHHHHHHHTTBGGGSTTSCCCCCCCTTHHHHCSSCCHHHHHHHHTTS----CCCCCCCTTCCCCSHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHhcCCcCCCccchhHHHHhhhcccCCCchHHHHHhhhccc----ccCCCCCcccccccchHHHHHHHHHHHhc
Confidence 99999999998775432211100 0 000111111111 11122211 122345567778889999
Q ss_pred CCCCCCCCHHHHHHHHhcCcCC
Q 038019 769 TSPMMRPPMSRVVAMLAGDIEV 790 (866)
Q Consensus 769 ~~p~~RPsm~~V~~~L~~~~~~ 790 (866)
.||++|||+.||++.|+.....
T Consensus 298 ~dP~~Rps~~e~l~~L~~ll~~ 319 (336)
T 3g2f_A 298 QDAEARLTAQXAEERMAELMMI 319 (336)
T ss_dssp SSGGGSCCHHHHHHHHHHHHHC
T ss_pred CChhhCcchHHHHHHHHHHHHH
Confidence 9999999999999999975543
|
| >3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} SCOP: d.144.1.7 PDB: 3sxr_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=1.5e-13 Score=144.69 Aligned_cols=131 Identities=19% Similarity=0.269 Sum_probs=93.2
Q ss_pred CCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHh-cCCCCCCCc
Q 038019 642 KPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIIS-GRASSDKSL 720 (866)
Q Consensus 642 ~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~t-g~~p~~~~~ 720 (866)
..|++...+...++.|||.+..+..+.. ....+..+|..|+|||......++.++||||||++++||+| |+.|++...
T Consensus 132 p~Nil~~~~~~~~l~Dfg~~~~~~~~~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~ 210 (268)
T 3sxs_A 132 ARNCLVDRDLCVKVSDFGMTRYVLDDQY-VSSVGTKFPVKWSAPEVFHYFKYSSKSDVWAFGILMWEVFSLGKMPYDLYT 210 (268)
T ss_dssp GGGEEECTTCCEEECCTTCEEECCTTCE-EECCSCCCCGGGCCHHHHHHSEEETTHHHHHHHHHHHHHHTTTCCTTTTSC
T ss_pred cceEEECCCCCEEEccCccceecchhhh-hcccCCCcCcccCCHHHHhccCCchhhhhHHHHHHHHHHHcCCCCCccccC
Confidence 3466766677788999999988876543 22345567788999999998899999999999999999999 999987544
Q ss_pred hhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhcCc
Q 038019 721 DMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLAGDI 788 (866)
Q Consensus 721 ~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~~~~ 788 (866)
..+. . .. ...+. ....| ....+ .+.++...|++.+|++|||+.||++.|+...
T Consensus 211 ~~~~---~---~~-~~~~~--~~~~~---~~~~~---~l~~li~~~l~~~p~~Rps~~~ll~~L~~l~ 263 (268)
T 3sxs_A 211 NSEV---V---LK-VSQGH--RLYRP---HLASD---TIYQIMYSCWHELPEKRPTFQQLLSSIEPLR 263 (268)
T ss_dssp HHHH---H---HH-HHTTC--CCCCC---TTSCH---HHHHHHHHTTCSSGGGSCCHHHHHHHHGGGC
T ss_pred hHHH---H---HH-HHcCC--CCCCC---CcChH---HHHHHHHHHcCCChhhCcCHHHHHHHHHHhh
Confidence 3221 1 11 11111 11111 11122 3555667999999999999999999998643
|
| >2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ... | Back alignment and structure |
|---|
Probab=99.38 E-value=1.9e-13 Score=147.59 Aligned_cols=134 Identities=20% Similarity=0.209 Sum_probs=95.2
Q ss_pred CCCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHh-cCCCCCCC
Q 038019 641 SKPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIIS-GRASSDKS 719 (866)
Q Consensus 641 ~~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~t-g~~p~~~~ 719 (866)
...|++...+...++.|||.++.+.............||.+|+|||.+.+..++.++||||||++++||+| |+.|+...
T Consensus 175 kp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~~l~t~g~~p~~~~ 254 (316)
T 2xir_A 175 AARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGV 254 (316)
T ss_dssp SGGGEEECGGGCEEECCCGGGSCTTTCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTC
T ss_pred ccceEEECCCCCEEECCCccccccccCccceeccCCCcceeecCchhhccccccchhHHHHHHHHHHHHHhCCCCCCccc
Confidence 33477777777788999999988866543333334567899999999999999999999999999999998 99998754
Q ss_pred chhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhcCc
Q 038019 720 LDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLAGDI 788 (866)
Q Consensus 720 ~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~~~~ 788 (866)
...+. + ......+.. +...... ...+.+++..|++.+|++||++.||++.|+...
T Consensus 255 ~~~~~--~----~~~~~~~~~-----~~~~~~~---~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~ 309 (316)
T 2xir_A 255 KIDEE--F----CRRLKEGTR-----MRAPDYT---TPEMYQTMLDCWHGEPSQRPTFSELVEHLGNLL 309 (316)
T ss_dssp CCSHH--H----HHHHHHTCC-----CCCCTTC---CHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred chhHH--H----HHHhccCcc-----CCCCCCC---CHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHH
Confidence 32211 1 111221111 1111111 223556667999999999999999999998644
|
| >2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=8.4e-14 Score=150.28 Aligned_cols=132 Identities=19% Similarity=0.195 Sum_probs=93.3
Q ss_pred CCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHh-cCCCCCCCc
Q 038019 642 KPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIIS-GRASSDKSL 720 (866)
Q Consensus 642 ~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~t-g~~p~~~~~ 720 (866)
..|++...+...++.|||.++.+.............+|++|+|||...+..++.++|||||||+++||+| |+.|+....
T Consensus 178 p~NIli~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~ 257 (314)
T 2ivs_A 178 ARNILVAEGRKMKISDFGLSRDVYEEDSYVKRSQGRIPVKWMAIESLFDHIYTTQSDVWSFGVLLWEIVTLGGNPYPGIP 257 (314)
T ss_dssp GGGEEEETTTEEEECCCTTCEECTTTSCEECSSCCCSCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSSTTCC
T ss_pred hheEEEcCCCCEEEccccccccccccccceeccCCCCcccccChhhhcCCCcCchhhHHHHHHHHHHHHhCCCCCCCCCC
Confidence 3467776666788999999988765433222233457889999999999999999999999999999999 999987644
Q ss_pred hhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhcCc
Q 038019 721 DMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLAGDI 788 (866)
Q Consensus 721 ~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~~~~ 788 (866)
... +...+ ..+.. +.... .....+.+++..|++.||++||++.||++.|+...
T Consensus 258 ~~~---~~~~~----~~~~~-----~~~~~---~~~~~~~~li~~~l~~dp~~Rps~~~l~~~l~~~~ 310 (314)
T 2ivs_A 258 PER---LFNLL----KTGHR-----MERPD---NCSEEMYRLMLQCWKQEPDKRPVFADISKDLEKMM 310 (314)
T ss_dssp GGG---HHHHH----HTTCC-----CCCCT---TCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred HHH---HHHHh----hcCCc-----CCCCc---cCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHH
Confidence 322 22221 11111 11111 11234556677999999999999999999998643
|
| >4f9c_A Cell division cycle 7-related protein kinase; Ser/Thr protein kinase, transferase, phosphorylation, cell C cell division, mitosis, S phase; HET: 0SX; 2.08A {Homo sapiens} PDB: 4f99_A* 4f9b_A* 4f9a_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=1.9e-13 Score=149.90 Aligned_cols=78 Identities=24% Similarity=0.271 Sum_probs=57.3
Q ss_pred CcccCHHH-HHHHhcCCccccccCCCCce--------------------------eEEEeecCCCCccCceeeecC-CCC
Q 038019 643 PNIFGYAE-LRSATKDFNRSNKLGEGGYG--------------------------PVYKVTANSYGYLAPEYAMRG-HLT 694 (866)
Q Consensus 643 ~~~~~~~~-~~~~~~dF~~~~~lg~g~~g--------------------------~vy~~~~gt~gY~aPE~~~~~-~~t 694 (866)
.|++...+ ...++.|||+++........ ......+||++|||||.+.+. .++
T Consensus 146 eNiLl~~~~~~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~y~ 225 (361)
T 4f9c_A 146 SNFLYNRRLKKYALVDFGLAQGTHDTKIELLKFVQSEAQQERCSQNKCSICLSRRQQVAPRAGTPGFRAPEVLTKCPNQT 225 (361)
T ss_dssp GGEEEETTTTEEEECCCTTCEECTTCSCGGGGGC--------------------------CCCCGGGCCHHHHTTCSCCC
T ss_pred HHeEEeCCCCeEEECcCCCCcccCCccccccccccccccccccccccccccccccccccccccCccccCHHHHcCCCCCC
Confidence 36665544 35678999999876543210 112234799999999998765 589
Q ss_pred chhHHHHHHHHHHHHHhcCCCCCCCc
Q 038019 695 EKADVFSFGVVALEIISGRASSDKSL 720 (866)
Q Consensus 695 ~ksDVySfGvvLlEl~tg~~p~~~~~ 720 (866)
.++||||+||+++||+||+.||....
T Consensus 226 ~~~DiWSlG~il~ell~G~~Pf~~~~ 251 (361)
T 4f9c_A 226 TAIDMWSAGVIFLSLLSGRYPFYKAS 251 (361)
T ss_dssp THHHHHHHHHHHHHHHHTCSSSSCCS
T ss_pred CccchhhhHHHHHHHHHCCCCCCCCC
Confidence 99999999999999999999996543
|
| >1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=7.6e-14 Score=148.22 Aligned_cols=130 Identities=18% Similarity=0.206 Sum_probs=80.6
Q ss_pred CCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHh-cCCCCCCCc
Q 038019 642 KPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIIS-GRASSDKSL 720 (866)
Q Consensus 642 ~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~t-g~~p~~~~~ 720 (866)
..|++...+...++.|||.++.+........ ....+|+.|+|||.+....++.++||||||++++||++ |+.|+....
T Consensus 144 p~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~-~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~ell~~g~~pf~~~~ 222 (281)
T 1mp8_A 144 ARNVLVSSNDCVKLGDFGLSRYMEDSTYYKA-SKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVK 222 (281)
T ss_dssp GGGEEEEETTEEEECC--------------------CCGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTSCCTTTTCC
T ss_pred HHHEEECCCCCEEECccccccccCccccccc-ccCCCcccccChhhcccCCCCCccCchHHHHHHHHHHhcCCCCCCcCC
Confidence 3466666666778999999988866543222 22356789999999998999999999999999999997 999987544
Q ss_pred hhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhcC
Q 038019 721 DMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLAGD 787 (866)
Q Consensus 721 ~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~~~ 787 (866)
..+ +...+. .+.. +.+... ....+.+++..|++.+|++||++.||++.|+..
T Consensus 223 ~~~---~~~~i~----~~~~-----~~~~~~---~~~~l~~li~~~l~~~p~~Rps~~~l~~~l~~~ 274 (281)
T 1mp8_A 223 NND---VIGRIE----NGER-----LPMPPN---CPPTLYSLMTKCWAYDPSRRPRFTELKAQLSTI 274 (281)
T ss_dssp GGG---HHHHHH----TTCC-----CCCCTT---CCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred HHH---HHHHHH----cCCC-----CCCCCC---CCHHHHHHHHHHccCChhhCcCHHHHHHHHHHH
Confidence 322 222221 1111 111111 123355566799999999999999999999854
|
| >3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A | Back alignment and structure |
|---|
Probab=99.38 E-value=2.6e-13 Score=158.12 Aligned_cols=116 Identities=19% Similarity=0.181 Sum_probs=83.4
Q ss_pred HHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCCchhhhhcHHHH
Q 038019 651 LRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSLDMEKIYLLEW 730 (866)
Q Consensus 651 ~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~~~~~~l~~~ 730 (866)
...++.|||+++.+..+. .++..+||+.|||||.+.+..++.++||||+||+++||++|+.||......+ ....
T Consensus 294 ~~vKl~DFG~a~~~~~~~---~~~~~~GT~~y~APEv~~~~~y~~~~DiWSlGvilyeml~G~~Pf~~~~~~~---~~~~ 367 (573)
T 3uto_A 294 NELKLIDFGLTAHLDPKQ---SVKVTTGTAEFAAPEVAEGKPVGYYTDMWSVGVLSYILLSGLSPFGGENDDE---TLRN 367 (573)
T ss_dssp CCEEECCCSSCEECCTTS---EEEEECSSGGGCCHHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSCCSSHHH---HHHH
T ss_pred CCEEEeeccceeEccCCC---ceeeeEECccccCHHHhCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCHHH---HHHH
Confidence 346889999999987654 3455689999999999999999999999999999999999999997644322 2211
Q ss_pred HHHHhhcCCcccccCCcc-cccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 731 AWNLHENNQSFGLVDPTL-TEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 731 ~~~~~~~~~~~~~~d~~l-~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
+ ..+.. .+++.. .... ++ +.++...|++.||++|||+.|+++
T Consensus 368 i----~~~~~--~~~~~~~~~~s-~~---~~dli~~~L~~dp~~R~t~~e~l~ 410 (573)
T 3uto_A 368 V----KSCDW--NMDDSAFSGIS-ED---GKDFIRKLLLADPNTRMTIHQALE 410 (573)
T ss_dssp H----HTTCC--CCCSGGGTTSC-HH---HHHHHHTTSCSSGGGSCCHHHHHH
T ss_pred H----HhCCC--CCCcccccCCC-HH---HHHHHHHHccCChhHCcCHHHHhc
Confidence 1 11111 011111 1222 23 344566999999999999999976
|
| >2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.38 E-value=1.6e-13 Score=150.96 Aligned_cols=142 Identities=12% Similarity=0.097 Sum_probs=94.3
Q ss_pred CCcccCHHHH--HHHhcCCccccccCCCCceeEE-----EeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCC
Q 038019 642 KPNIFGYAEL--RSATKDFNRSNKLGEGGYGPVY-----KVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRA 714 (866)
Q Consensus 642 ~~~~~~~~~~--~~~~~dF~~~~~lg~g~~g~vy-----~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~ 714 (866)
..|++...+. ..++.|||.++.+...+....+ ....||..|+|||.+.+..++.++|||||||+++||+||+.
T Consensus 187 p~NIl~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~ 266 (352)
T 2jii_A 187 AENIFVDPEDQSQVTLAGYGFAFRYCPSGKHVAYVEGSRSPHEGDLEFISMDLHKGCGPSRRSDLQSLGYCMLKWLYGFL 266 (352)
T ss_dssp GGGEEEETTEEEEEEECCGGGCBCSSGGGCCCCCCTTSSCTTCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHEEEcCCCCceEEEecCcceeeccCCCccccccccccccccCCccccCHHHHccCCCCchhhHHHHHHHHHHHHhCCC
Confidence 3466666665 6789999999887654321111 22368999999999999999999999999999999999999
Q ss_pred CCCCCchhhhhcHHHHHHHHhhcCCcccccCCccc-ccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhcCcC
Q 038019 715 SSDKSLDMEKIYLLEWAWNLHENNQSFGLVDPTLT-EFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLAGDIE 789 (866)
Q Consensus 715 p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~-~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~~~~~ 789 (866)
|+....... ..+..+...... ......++... .... ..+.+++..|++.||++||++.+|+++|+....
T Consensus 267 pf~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~---~~l~~li~~~l~~dp~~Rps~~~l~~~L~~~~~ 336 (352)
T 2jii_A 267 PWTNCLPNT-EDIMKQKQKFVD--KPGPFVGPCGHWIRPS---ETLQKYLKVVMALTYEEKPPYAMLRNNLEALLQ 336 (352)
T ss_dssp TTGGGTTCH-HHHHHHHHHHHH--SCCCEECTTSCEECCC---HHHHHHHHHHHTCCTTCCCCHHHHHHHHHHHHH
T ss_pred CcccCCcCH-HHHHHHHHhccC--ChhhhhhhccccCCCc---HHHHHHHHHHHhCChhhCCCHHHHHHHHHHHHH
Confidence 987543111 112222221111 11112222111 1112 335556669999999999999999999986544
|
| >4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=4.3e-13 Score=142.79 Aligned_cols=117 Identities=26% Similarity=0.377 Sum_probs=82.3
Q ss_pred HHhcCCccccccCCCCceeEEEeecCCCCccCceee--ecCCCCchhHHHHHHHHHHHHHhcCCCCCCCchhhhhcHHHH
Q 038019 653 SATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYA--MRGHLTEKADVFSFGVVALEIISGRASSDKSLDMEKIYLLEW 730 (866)
Q Consensus 653 ~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~--~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~~~~~~l~~~ 730 (866)
.++.|||.++..... .....||..|+|||.+ ....++.++|||||||+++||+||+.|+....... ......
T Consensus 168 ~kl~Dfg~~~~~~~~-----~~~~~g~~~y~aPE~~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~-~~~~~~ 241 (287)
T 4f0f_A 168 AKVADFGLSQQSVHS-----VSGLLGNFQWMAPETIGAEEESYTEKADTYSFAMILYTILTGEGPFDEYSYGK-IKFINM 241 (287)
T ss_dssp EEECCCTTCBCCSSC-----EECCCCCCTTSCGGGSSCSSCEECHHHHHHHHHHHHHHHHHSSCTTTTCCCCH-HHHHHH
T ss_pred EEeCCCCcccccccc-----ccccCCCccccCchhhccCCCCcCchhhHHHHHHHHHHHHcCCCCCccccccH-HHHHHH
Confidence 678999998865542 3445799999999998 45668999999999999999999999997544322 111111
Q ss_pred HHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhc
Q 038019 731 AWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLAG 786 (866)
Q Consensus 731 ~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~~ 786 (866)
. ...+ ..+.+.... ...+.+++..|++.||++||++.||++.|+.
T Consensus 242 ~---~~~~-----~~~~~~~~~---~~~l~~li~~~l~~dp~~Rps~~~ll~~L~~ 286 (287)
T 4f0f_A 242 I---REEG-----LRPTIPEDC---PPRLRNVIELCWSGDPKKRPHFSYIVKELSE 286 (287)
T ss_dssp H---HHSC-----CCCCCCTTS---CHHHHHHHHHHTCSSGGGSCCHHHHHHHHHT
T ss_pred H---hccC-----CCCCCCccc---CHHHHHHHHHHhcCChhhCcCHHHHHHHHHh
Confidence 1 1111 112221111 2345566679999999999999999999974
|
| >3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} SCOP: d.144.1.7 PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=2.3e-13 Score=145.87 Aligned_cols=125 Identities=17% Similarity=0.183 Sum_probs=87.3
Q ss_pred CcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCCchh
Q 038019 643 PNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSLDM 722 (866)
Q Consensus 643 ~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~~ 722 (866)
.|++...+...++.|||.+..+..... ......||+.|+|||.+....++.++|||||||+++||+||+.|+......
T Consensus 145 ~Nil~~~~~~~kl~Dfg~~~~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~ 222 (297)
T 3fxz_A 145 DNILLGMDGSVKLTDFGFCAQITPEQS--KRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNENPL 222 (297)
T ss_dssp GGEEECTTCCEEECCCTTCEECCSTTC--CBCCCCSCGGGCCHHHHHCSCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHH
T ss_pred HHEEECCCCCEEEeeCCCceecCCccc--ccCCccCCcCccChhhhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHH
Confidence 466666666788999999887765432 233457999999999999999999999999999999999999999754332
Q ss_pred hhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 723 EKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 723 ~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
.. .......+.. .. ...... ...+.++...|++.||++|||+.|+++
T Consensus 223 ~~------~~~~~~~~~~-~~---~~~~~~---~~~~~~li~~~l~~dp~~Rps~~ell~ 269 (297)
T 3fxz_A 223 RA------LYLIATNGTP-EL---QNPEKL---SAIFRDFLNRCLEMDVEKRGSAKELLQ 269 (297)
T ss_dssp HH------HHHHHHHCSC-CC---SCGGGS---CHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred HH------HHHHHhCCCC-CC---CCcccc---CHHHHHHHHHHccCChhHCcCHHHHhh
Confidence 21 1111111110 01 011111 223455667999999999999999975
|
| >3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} SCOP: d.144.1.7 | Back alignment and structure |
|---|
Probab=99.37 E-value=1.6e-13 Score=149.63 Aligned_cols=149 Identities=15% Similarity=0.109 Sum_probs=95.0
Q ss_pred hccCCCCCcccCHHHHHHHhcCCccccccCCCCceeEE--EeecCCCCccCceeeecCCCCch------hHHHHHHHHHH
Q 038019 636 LVGIGSKPNIFGYAELRSATKDFNRSNKLGEGGYGPVY--KVTANSYGYLAPEYAMRGHLTEK------ADVFSFGVVAL 707 (866)
Q Consensus 636 ~~~~~~~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy--~~~~gt~gY~aPE~~~~~~~t~k------sDVySfGvvLl 707 (866)
.|......|++...+...++.|||.+..+........+ ....||.+|+|||.+.....+.+ +|||||||++|
T Consensus 164 vH~Dikp~Nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DiwslG~il~ 243 (337)
T 3mdy_A 164 AHRDLKSKNILVKKNGTCCIADLGLAVKFISDTNEVDIPPNTRVGTKRYMPPEVLDESLNRNHFQSYIMADMYSFGLILW 243 (337)
T ss_dssp ECSCCCGGGEEECTTSCEEECCCTTCEECC---------CCSSCSCGGGCCHHHHTTCCCTTCTHHHHHHHHHHHHHHHH
T ss_pred EecccchHHEEECCCCCEEEEeCCCceeeccccccccCCCCCCccCcceeChhhcccccCCccccCccccchHHHHHHHH
Confidence 34333444777777778889999999877654322211 23479999999999887666554 99999999999
Q ss_pred HHHhc----------CCCCCCCchhhhhcHHHHHHHHhhcCCcccccCCcccc--cCHHHHHHHHHHHHHccCCCCCCCC
Q 038019 708 EIISG----------RASSDKSLDMEKIYLLEWAWNLHENNQSFGLVDPTLTE--FNDKEALRVIGVALLCTQTSPMMRP 775 (866)
Q Consensus 708 El~tg----------~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~--~~~~~~~~~~~la~~C~~~~p~~RP 775 (866)
||+|| +.|+....... ..... ....... ....+.... ...+....+.+++..|++.||++||
T Consensus 244 el~tg~~~~~~~~~~~~p~~~~~~~~-~~~~~-~~~~~~~----~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rp 317 (337)
T 3mdy_A 244 EVARRCVSGGIVEEYQLPYHDLVPSD-PSYED-MREIVCI----KKLRPSFPNRWSSDECLRQMGKLMTECWAHNPASRL 317 (337)
T ss_dssp HHHTTBCBTTBCCCCCCTTTTTSCSS-CCHHH-HHHHHTT----SCCCCCCCGGGGGSHHHHHHHHHHHHHSCSSGGGSC
T ss_pred HHHhccCcccccccccccHhhhcCCC-Cchhh-hHHHHhh----hccCccccccchhhHHHHHHHHHHHHhhhhChhhCC
Confidence 99999 55654332211 11111 1111111 112232211 1224556677888899999999999
Q ss_pred CHHHHHHHHhcCcCC
Q 038019 776 PMSRVVAMLAGDIEV 790 (866)
Q Consensus 776 sm~~V~~~L~~~~~~ 790 (866)
++.||++.|+.....
T Consensus 318 s~~ell~~L~~l~~~ 332 (337)
T 3mdy_A 318 TALRVKKTLAKMSES 332 (337)
T ss_dssp CHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHhh
Confidence 999999999865443
|
| >3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.37 E-value=1.1e-13 Score=149.12 Aligned_cols=140 Identities=14% Similarity=0.050 Sum_probs=92.0
Q ss_pred ccCCCCCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCC
Q 038019 637 VGIGSKPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASS 716 (866)
Q Consensus 637 ~~~~~~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~ 716 (866)
|......|++...+...++.|||.++.++.... .....||..|+|||.+..+.++.++|||||||+++||+||+.|+
T Consensus 143 H~Dlkp~Nil~~~~~~~kl~Dfg~a~~~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~l~~g~~pf 219 (308)
T 3g33_A 143 HRDLKPENILVTSGGTVKLADFGLARIYSYQMA---LTPVVVTLWYRAPEVLLQSTYATPVDMWSVGCIFAEMFRRKPLF 219 (308)
T ss_dssp CSCCCTTTEEECTTSCEEECSCSCTTTSTTCCC---SGGGGCCCSSCCHHHHHTSCCCSTHHHHHHHHHHHHTTTSSCSC
T ss_pred cCCCCHHHEEEcCCCCEEEeeCccccccCCCcc---cCCccccccccCchHHcCCCCCchHHHHHHHHHHHHHHhCCCCC
Confidence 333344477777777788999999988765432 23457899999999999999999999999999999999999999
Q ss_pred CCCchhhhhcHHHHHHHHhh---cCCccc-------ccCCcc----cccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 717 DKSLDMEKIYLLEWAWNLHE---NNQSFG-------LVDPTL----TEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 717 ~~~~~~~~~~l~~~~~~~~~---~~~~~~-------~~d~~l----~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
......+ ....+..... .....+ .+.+.. .....+....+.++...|++.||++|||+.|+++
T Consensus 220 ~~~~~~~---~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~ 296 (308)
T 3g33_A 220 CGNSEAD---QLGKIFDLIGLPPEDDWPRDVSLPRGAFPPRGPRPVQSVVPEMEESGAQLLLEMLTFNPHKRISAFRALQ 296 (308)
T ss_dssp CCSSHHH---HHHHHHHHHCCCCTTTSCSSCSSCGGGSCCCCCCCHHHHSCSCCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred CCCCHHH---HHHHHHHHhCCCChhhccchhhccccccCCCCCCcHHHhCccccHHHHHHHHHHhcCCCccCCCHHHHhc
Confidence 7654332 2222222111 110000 000000 0000111234556777999999999999999875
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.37 E-value=2.1e-12 Score=126.42 Aligned_cols=105 Identities=18% Similarity=0.283 Sum_probs=80.0
Q ss_pred CEEEccCCCCCCCCCccccCCCCcCEEeccCCcCCCCCCccccCCCCCCEeeccCCCCCCCCchhhcCCCCccEEEeecC
Q 038019 92 TVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKELTVLAFGTNNFSGALPPELGNLAKLEQLYIDSC 171 (866)
Q Consensus 92 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n 171 (866)
+.+++++|.++ .+|..+. ++|++|+|++|+|++..|..|.++++|++|+|++|++++..+..|.++++|++|+|++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 67889888886 5676554 78888888888888877888888888888888888888665556677777777777777
Q ss_pred CCCCCChhhhhcCcCCCEEEecCCCCCC
Q 038019 172 GAGGEIPSTFAKLRNMQTLWASDNPFTG 199 (866)
Q Consensus 172 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 199 (866)
++++..+..|..+++|++|+|++|.+..
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred ccceeCHHHhccccCCCEEEeCCCCccc
Confidence 7776655567777777777777776653
|
| >1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ... | Back alignment and structure |
|---|
Probab=99.37 E-value=8.1e-14 Score=151.07 Aligned_cols=133 Identities=20% Similarity=0.281 Sum_probs=91.7
Q ss_pred CCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHh-cCCCCCCCc
Q 038019 642 KPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIIS-GRASSDKSL 720 (866)
Q Consensus 642 ~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~t-g~~p~~~~~ 720 (866)
..|++...+...++.|||.++.+....+........||.+|+|||.+.++.++.++||||||++++||+| |+.|+....
T Consensus 166 p~NIli~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~ 245 (322)
T 1p4o_A 166 ARNCMVAEDFTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGLS 245 (322)
T ss_dssp GGGEEECTTCCEEECCTTCCCGGGGGGCEEGGGSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHHTSCCTTTTSC
T ss_pred cceEEEcCCCeEEECcCccccccccccccccccCCCCCCCccChhhhccCCCCchhhHHHHHHHHHHHHhcCCCccccCC
Confidence 3467776677788999999987765432111112246789999999999999999999999999999999 888887543
Q ss_pred hhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhcCcC
Q 038019 721 DMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLAGDIE 789 (866)
Q Consensus 721 ~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~~~~~ 789 (866)
..+ +... ...+.... ..... ...+.++...|++.+|++||++.||++.|+....
T Consensus 246 ~~~---~~~~----~~~~~~~~----~~~~~----~~~l~~li~~~l~~dp~~Rps~~e~l~~L~~~~~ 299 (322)
T 1p4o_A 246 NEQ---VLRF----VMEGGLLD----KPDNC----PDMLFELMRMCWQYNPKMRPSFLEIISSIKEEME 299 (322)
T ss_dssp HHH---HHHH----HHTTCCCC----CCTTC----CHHHHHHHHHHTCSSGGGSCCHHHHHHHHGGGSC
T ss_pred HHH---HHHH----HHcCCcCC----CCCCC----CHHHHHHHHHHcCCCcccCcCHHHHHHHHHHhhc
Confidence 221 2211 11121111 00111 2235556679999999999999999999986544
|
| >4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=99.37 E-value=1.9e-13 Score=146.15 Aligned_cols=136 Identities=18% Similarity=0.228 Sum_probs=88.8
Q ss_pred CCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCCch
Q 038019 642 KPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSLD 721 (866)
Q Consensus 642 ~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~ 721 (866)
..|++...+...++.|||.+..++.... .......||+.|+|||.+.+..++.++|||||||+++||+||+.|+.....
T Consensus 139 p~Nil~~~~~~~kl~Dfg~~~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~g~~pf~~~~~ 217 (294)
T 4eqm_A 139 PQNILIDSNKTLKIFDFGIAKALSETSL-TQTNHVLGTVQYFSPEQAKGEATDECTDIYSIGIVLYEMLVGEPPFNGETA 217 (294)
T ss_dssp GGGEEECTTSCEEECCCSSSTTC--------------CCSSCCHHHHHTCCCCTTHHHHHHHHHHHHHHHSSCSSCSSCH
T ss_pred HHHEEECCCCCEEEEeCCCccccccccc-cccCccccCccccCHhHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCCCh
Confidence 3467766666788999999988865432 223345699999999999999999999999999999999999999975432
Q ss_pred hhhhcHHHHHHHHhhcCCcccccCCcc-cccCHHHHHHHHHHHHHccCCCCCCCC-CHHHHHHHHhcCcCC
Q 038019 722 MEKIYLLEWAWNLHENNQSFGLVDPTL-TEFNDKEALRVIGVALLCTQTSPMMRP-PMSRVVAMLAGDIEV 790 (866)
Q Consensus 722 ~~~~~l~~~~~~~~~~~~~~~~~d~~l-~~~~~~~~~~~~~la~~C~~~~p~~RP-sm~~V~~~L~~~~~~ 790 (866)
.. ......... . +.. .....+....+.++..+|++.||++|| ++.++.+.|+.....
T Consensus 218 ~~------~~~~~~~~~-~-----~~~~~~~~~~~~~~l~~li~~~l~~dp~~R~~~~~~l~~~l~~~~~~ 276 (294)
T 4eqm_A 218 VS------IAIKHIQDS-V-----PNVTTDVRKDIPQSLSNVILRATEKDKANRYKTIQEMKDDLSSVLHE 276 (294)
T ss_dssp HH------HHHHHHSSC-C-----CCHHHHSCTTSCHHHHHHHHHHSCSSGGGSCSSHHHHHHHHHTSSSS
T ss_pred HH------HHHHHhhcc-C-----CCcchhcccCCCHHHHHHHHHHhcCCHhHccccHHHHHHHHHHHHhh
Confidence 21 111211111 0 111 011111123455677799999999998 899999999865543
|
| >1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7 | Back alignment and structure |
|---|
Probab=99.36 E-value=1.5e-13 Score=149.78 Aligned_cols=134 Identities=20% Similarity=0.245 Sum_probs=86.3
Q ss_pred CCcccCHHHHHHHhcCCccccccCCCCce-eEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHh-cCCCCCCC
Q 038019 642 KPNIFGYAELRSATKDFNRSNKLGEGGYG-PVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIIS-GRASSDKS 719 (866)
Q Consensus 642 ~~~~~~~~~~~~~~~dF~~~~~lg~g~~g-~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~t-g~~p~~~~ 719 (866)
..|++...+...++.|||.++.++..... ....+..+|..|+|||.+....++.++|||||||+++||+| |+.|+...
T Consensus 175 p~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~pf~~~ 254 (333)
T 1mqb_A 175 ARNILVNSNLVCKVSDFGLSRVLEDDPEATYTTSGGKIPIRWTAPEAISYRKFTSASDVWSFGIVMWEVMTYGERPYWEL 254 (333)
T ss_dssp GGGEEECTTCCEEECCCCC-----------------CCCGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCTTTTC
T ss_pred hheEEECCCCcEEECCCCcchhhccccccccccCCCCccccccCchhcccCCCCchhhhHHHHHHHHHHHcCCCCCcccC
Confidence 34677766777889999999887654321 11223356889999999999999999999999999999999 99998754
Q ss_pred chhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhcCcCC
Q 038019 720 LDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLAGDIEV 790 (866)
Q Consensus 720 ~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~~~~~~ 790 (866)
...+ +.. ....+.. +.... .....+.+++..||+.+|++||+|.+|+++|+.....
T Consensus 255 ~~~~---~~~----~~~~~~~-----~~~~~---~~~~~l~~li~~~l~~~p~~Rps~~~l~~~L~~~~~~ 310 (333)
T 1mqb_A 255 SNHE---VMK----AINDGFR-----LPTPM---DCPSAIYQLMMQCWQQERARRPKFADIVSILDKLIRA 310 (333)
T ss_dssp CHHH---HHH----HHHTTCC-----CCCCT---TCBHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHHHS
T ss_pred CHHH---HHH----HHHCCCc-----CCCcc---cCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHhc
Confidence 3322 221 1122110 11111 1123455677799999999999999999999875543
|
| >3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.36 E-value=1.3e-13 Score=148.88 Aligned_cols=125 Identities=24% Similarity=0.299 Sum_probs=84.1
Q ss_pred ccCCCCCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCC
Q 038019 637 VGIGSKPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASS 716 (866)
Q Consensus 637 ~~~~~~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~ 716 (866)
+......|++...+...++.|||.+..++.... .....||++|+|||++.+ .++.++|||||||+++||+||+.|+
T Consensus 180 H~Dikp~NIll~~~~~~kl~DFG~a~~~~~~~~---~~~~~gt~~y~aPE~~~~-~~~~~~DiwslG~il~el~~g~~~~ 255 (311)
T 3p1a_A 180 HLDVKPANIFLGPRGRCKLGDFGLLVELGTAGA---GEVQEGDPRYMAPELLQG-SYGTAADVFSLGLTILEVACNMELP 255 (311)
T ss_dssp CCCCSGGGEEECGGGCEEECCCTTCEECC---------CCCCCGGGCCGGGGGT-CCSTHHHHHHHHHHHHHHHHTCCCC
T ss_pred cCCCCHHHEEECCCCCEEEccceeeeecccCCC---CcccCCCccccCHhHhcC-CCCchhhHHHHHHHHHHHHhCCCCC
Confidence 333334477877888889999999988765433 334568999999998764 7999999999999999999998775
Q ss_pred CCCchhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 717 DKSLDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 717 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
... +. | ..+..+ ...+.+... ....+.+++..|++.||++|||+.|+++
T Consensus 256 ~~~---~~-----~--~~~~~~----~~~~~~~~~---~~~~l~~li~~~L~~dP~~Rpt~~ell~ 304 (311)
T 3p1a_A 256 HGG---EG-----W--QQLRQG----YLPPEFTAG---LSSELRSVLVMMLEPDPKLRATAEALLA 304 (311)
T ss_dssp SSH---HH-----H--HHHTTT----CCCHHHHTT---SCHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred CCc---cH-----H--HHHhcc----CCCcccccC---CCHHHHHHHHHHcCCChhhCcCHHHHHh
Confidence 431 10 1 111111 111111111 1234556677999999999999999985
|
| >2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ... | Back alignment and structure |
|---|
Probab=99.36 E-value=2e-13 Score=148.87 Aligned_cols=132 Identities=19% Similarity=0.215 Sum_probs=94.0
Q ss_pred CcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHh-cCCCCCCCch
Q 038019 643 PNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIIS-GRASSDKSLD 721 (866)
Q Consensus 643 ~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~t-g~~p~~~~~~ 721 (866)
.|++...+...++.|||.+..++............+|++|+|||.+.+..++.++|||||||+++||+| |+.|+.....
T Consensus 186 ~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~ 265 (334)
T 2pvf_A 186 RNVLVTENNVMKIADFGLARDINNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIPV 265 (334)
T ss_dssp GGEEECTTCCEEECCCTTCEECTTTSSEECCSCCCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSSTTCCH
T ss_pred ceEEEcCCCCEEEccccccccccccccccccCCCCcccceeChHHhcCCCcChHHHHHHHHHHHHHHHhCCCCCcCcCCH
Confidence 467766666788999999988876544333334457889999999998899999999999999999999 9999875432
Q ss_pred hhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhcCcC
Q 038019 722 MEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLAGDIE 789 (866)
Q Consensus 722 ~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~~~~~ 789 (866)
.+ +...+ ..+.. +.... .....+.+++..|++.+|++||++.||++.|+....
T Consensus 266 ~~---~~~~~----~~~~~-----~~~~~---~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~l~~ 318 (334)
T 2pvf_A 266 EE---LFKLL----KEGHR-----MDKPA---NCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDRILT 318 (334)
T ss_dssp HH---HHHHH----HHTCC-----CCCCT---TCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred HH---HHHHH----hcCCC-----CCCCc---cCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHh
Confidence 22 22221 11111 11111 112345566679999999999999999999997554
|
| >2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=1.8e-13 Score=148.34 Aligned_cols=126 Identities=15% Similarity=0.208 Sum_probs=87.6
Q ss_pred CCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCCch
Q 038019 642 KPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSLD 721 (866)
Q Consensus 642 ~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~ 721 (866)
..|++...+...++.|||.+..+..... ......||.+|+|||++.++.++.++|||||||+++||+||+.|+.....
T Consensus 169 p~NIll~~~~~~kl~Dfg~~~~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~pf~~~~~ 246 (321)
T 2c30_A 169 SDSILLTLDGRVKLSDFGFCAQISKDVP--KRKSLVGTPYWMAPEVISRSLYATEVDIWSLGIMVIEMVDGEPPYFSDSP 246 (321)
T ss_dssp GGGEEECTTCCEEECCCTTCEECCSSSC--CBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCH
T ss_pred HHHEEECCCCcEEEeeeeeeeecccCcc--ccccccCCccccCHhhhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCH
Confidence 3467766666788999999888765421 12345799999999999999999999999999999999999999975432
Q ss_pred hhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 722 MEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 722 ~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
.. ....+.. . ..+.+.. .......+.++...|++.||++||++.||++
T Consensus 247 ~~---~~~~~~~----~-----~~~~~~~-~~~~~~~l~~li~~~l~~dp~~Rps~~ell~ 294 (321)
T 2c30_A 247 VQ---AMKRLRD----S-----PPPKLKN-SHKVSPVLRDFLERMLVRDPQERATAQELLD 294 (321)
T ss_dssp HH---HHHHHHH----S-----SCCCCTT-GGGSCHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred HH---HHHHHhc----C-----CCCCcCc-cccCCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence 21 1222111 1 1122210 0011123445666999999999999999986
|
| >1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=2.4e-13 Score=148.58 Aligned_cols=146 Identities=14% Similarity=0.071 Sum_probs=97.7
Q ss_pred ccCCCCCcccCHHHHHHHhcCCccccccCCCCcee--EEEeecCCCCccCceeeecC------CCCchhHHHHHHHHHHH
Q 038019 637 VGIGSKPNIFGYAELRSATKDFNRSNKLGEGGYGP--VYKVTANSYGYLAPEYAMRG------HLTEKADVFSFGVVALE 708 (866)
Q Consensus 637 ~~~~~~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~--vy~~~~gt~gY~aPE~~~~~------~~t~ksDVySfGvvLlE 708 (866)
|......|++...+...++.|||.+..+....... ......||..|+|||.+... .++.++|||||||+++|
T Consensus 170 H~Dlkp~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~il~e 249 (342)
T 1b6c_B 170 HRDLKSKNILVKKNGTCCIADLGLAVRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWE 249 (342)
T ss_dssp CSCCSGGGEEECTTSCEEECCCTTCEEEETTTTEEEECCCSCCCCGGGCCHHHHTSCCCTTCHHHHHHHHHHHHHHHHHH
T ss_pred eCCCCHHHEEECCCCCEEEEECCCceeccccccccccccccCCcCcccCCHhhhcccccccccccCCcccHHHHHHHHHH
Confidence 33333347777777778899999998876544211 12334799999999998765 34479999999999999
Q ss_pred HHhc----------CCCCCCCchhhhhcHHHHHHHHhhcCCcccccCCcccc--cCHHHHHHHHHHHHHccCCCCCCCCC
Q 038019 709 IISG----------RASSDKSLDMEKIYLLEWAWNLHENNQSFGLVDPTLTE--FNDKEALRVIGVALLCTQTSPMMRPP 776 (866)
Q Consensus 709 l~tg----------~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~--~~~~~~~~~~~la~~C~~~~p~~RPs 776 (866)
|+|| +.|+....... .....+...... +..++.+.. ...+....+.+++.+||+.+|++||+
T Consensus 250 l~tg~~~~~~~~~~~~p~~~~~~~~-~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dp~~Rps 323 (342)
T 1b6c_B 250 IARRCSIGGIHEDYQLPYYDLVPSD-PSVEEMRKVVCE-----QKLRPNIPNRWQSCEALRVMAKIMRECWYANGAARLT 323 (342)
T ss_dssp HHTTBCBTTBCCCCCCTTTTTSCSS-CCHHHHHHHHTT-----SCCCCCCCGGGGTSHHHHHHHHHHHHHCCSSGGGSCC
T ss_pred HHhccCcCCcccccccCccccCcCc-ccHHHHHHHHHH-----HHhCCCCcccccchhHHHHHHHHHHHHhccChhhCCC
Confidence 9999 66765432211 122222222111 123333321 12345567778889999999999999
Q ss_pred HHHHHHHHhcCc
Q 038019 777 MSRVVAMLAGDI 788 (866)
Q Consensus 777 m~~V~~~L~~~~ 788 (866)
|.||++.|+...
T Consensus 324 ~~~i~~~L~~i~ 335 (342)
T 1b6c_B 324 ALRIKKTLSQLS 335 (342)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999998643
|
| >1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A | Back alignment and structure |
|---|
Probab=99.36 E-value=3.4e-13 Score=153.37 Aligned_cols=127 Identities=19% Similarity=0.229 Sum_probs=89.6
Q ss_pred CCCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHh-cCCCCCCC
Q 038019 641 SKPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIIS-GRASSDKS 719 (866)
Q Consensus 641 ~~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~t-g~~p~~~~ 719 (866)
...|++...+...++.|||.++...... ....+++.|+|||.+..+.++.|+|||||||++|||+| |+.|+...
T Consensus 316 kp~Nill~~~~~~kl~DfG~a~~~~~~~-----~~~~~~~~y~aPE~~~~~~~~~~sDvwslG~~l~el~t~g~~P~~~~ 390 (450)
T 1k9a_A 316 AARNVLVSEDNVAKVSDFGLTKEASSTQ-----DTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRI 390 (450)
T ss_dssp CGGGEEECTTSCEEECCCTTCEECC-----------CCCTTTSCHHHHHSSCCCHHHHHHHHHHHHHHHHTTTCCSSTTS
T ss_pred CHhhEEECCCCCEEEeeCCCcccccccc-----cCCCCCcceeCHHHhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCC
Confidence 3347777777778899999988654321 12257899999999999999999999999999999999 99998754
Q ss_pred chhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhcC
Q 038019 720 LDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLAGD 787 (866)
Q Consensus 720 ~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~~~ 787 (866)
...+ +...+ ..+.. +.... .....+.+++..||+.+|++||||.+|++.|+..
T Consensus 391 ~~~~---~~~~i----~~~~~-----~~~p~---~~~~~l~~li~~cl~~dp~~Rpt~~~l~~~L~~i 443 (450)
T 1k9a_A 391 PLKD---VVPRV----EKGYK-----MDAPD---GCPPAVYDVMKNCWHLDAATRPTFLQLREQLEHI 443 (450)
T ss_dssp CTTT---HHHHH----HTTCC-----CCCCT---TCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred CHHH---HHHHH----HcCCC-----CCCCC---cCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHH
Confidence 4322 22222 22211 11111 1223455667799999999999999999999853
|
| >3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} SCOP: d.144.1.0 | Back alignment and structure |
|---|
Probab=99.36 E-value=1.7e-13 Score=144.58 Aligned_cols=119 Identities=18% Similarity=0.290 Sum_probs=77.3
Q ss_pred HHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCCchhhhhcHHH
Q 038019 650 ELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSLDMEKIYLLE 729 (866)
Q Consensus 650 ~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~~~~~~l~~ 729 (866)
+...++.|||.+..+..... ....||.+|+|||...+..++.++||||||++++||+||+.|+........
T Consensus 152 ~~~~kl~Dfg~~~~~~~~~~----~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~----- 222 (271)
T 3dtc_A 152 NKILKITDFGLAREWHRTTK----MSAAGAYAWMAPEVIRASMFSKGSDVWSYGVLLWELLTGEVPFRGIDGLAV----- 222 (271)
T ss_dssp SCCEEECCCCC-----------------CCGGGSCHHHHHHCCCSHHHHHHHHHHHHHHHHHCCCTTTTSCHHHH-----
T ss_pred CcceEEccCCcccccccccc----cCCCCccceeCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHH-----
Confidence 34467889999887765432 234689999999999999999999999999999999999999975432211
Q ss_pred HHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhc
Q 038019 730 WAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLAG 786 (866)
Q Consensus 730 ~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~~ 786 (866)
........ ..+..... ....+.+++..|++.+|++||++.||++.|+.
T Consensus 223 -~~~~~~~~-----~~~~~~~~---~~~~~~~li~~~l~~~p~~Rps~~e~l~~L~~ 270 (271)
T 3dtc_A 223 -AYGVAMNK-----LALPIPST---CPEPFAKLMEDCWNPDPHSRPSFTNILDQLTT 270 (271)
T ss_dssp -HHHHHTSC-----CCCCCCTT---CCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHC
T ss_pred -HHhhhcCC-----CCCCCCcc---cCHHHHHHHHHHhcCCcccCcCHHHHHHHHhc
Confidence 11111111 11111111 12345566779999999999999999999974
|
| >3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=3.4e-13 Score=143.14 Aligned_cols=129 Identities=19% Similarity=0.201 Sum_probs=88.0
Q ss_pred CcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHh-cCCCCCCCch
Q 038019 643 PNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIIS-GRASSDKSLD 721 (866)
Q Consensus 643 ~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~t-g~~p~~~~~~ 721 (866)
.|++...+...++.|||.+..+...... ......+|.+|+|||......++.++||||||++++||+| |+.|+.....
T Consensus 142 ~Nil~~~~~~~kl~Dfg~~~~~~~~~~~-~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~llt~g~~p~~~~~~ 220 (281)
T 3cc6_A 142 RNILVASPECVKLGDFGLSRYIEDEDYY-KASVTRLPIKWMSPESINFRRFTTASDVWMFAVCMWEILSFGKQPFFWLEN 220 (281)
T ss_dssp GGEEEEETTEEEECCCCGGGCC----------CCCCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCG
T ss_pred ceEEECCCCcEEeCccCCCccccccccc-ccccCCCCcceeCchhhccCCCCchhccHHHHHHHHHHHhCCCCCcccCCh
Confidence 4666666667789999999887654321 1233457889999999998999999999999999999999 9999875433
Q ss_pred hhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhcC
Q 038019 722 MEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLAGD 787 (866)
Q Consensus 722 ~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~~~ 787 (866)
.+ ....+. .+.. +....... ..+.++...|++.+|++||++.||++.|+..
T Consensus 221 ~~---~~~~~~----~~~~-----~~~~~~~~---~~l~~li~~~l~~~p~~Rps~~ell~~L~~~ 271 (281)
T 3cc6_A 221 KD---VIGVLE----KGDR-----LPKPDLCP---PVLYTLMTRCWDYDPSDRPRFTELVCSLSDV 271 (281)
T ss_dssp GG---HHHHHH----HTCC-----CCCCTTCC---HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred HH---HHHHHh----cCCC-----CCCCCCCC---HHHHHHHHHHccCCchhCcCHHHHHHHHHHH
Confidence 22 222211 1111 01111111 2355566799999999999999999999854
|
| >4hcu_A Tyrosine-protein kinase ITK/TSK; transferase-transferase inhibitor complex; HET: 13L; 1.43A {Homo sapiens} PDB: 4hct_A* 4hcv_A* 3t9t_A* 1sm2_A* 1snu_A* 1snx_A 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=1.8e-13 Score=144.18 Aligned_cols=130 Identities=22% Similarity=0.258 Sum_probs=91.1
Q ss_pred CCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHh-cCCCCCCCc
Q 038019 642 KPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIIS-GRASSDKSL 720 (866)
Q Consensus 642 ~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~t-g~~p~~~~~ 720 (866)
..|++...+...++.|||.++.+..+.. ....+..+|..|+|||.+....++.++||||||++++||+| |+.|+....
T Consensus 134 p~Nil~~~~~~~kl~Dfg~~~~~~~~~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~~g~~p~~~~~ 212 (269)
T 4hcu_A 134 ARNCLVGENQVIKVSDFGMTRFVLDDQY-TSSTGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRS 212 (269)
T ss_dssp GGGEEECGGGCEEECCTTGGGGBCCHHH-HSTTSTTCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCC
T ss_pred hheEEEcCCCCEEecccccccccccccc-ccccCcccccccCCHHHhcCCCCCchhhhHHHHHHHHHHhcCCCCCCCCCC
Confidence 3477776777788999999987764322 11223456788999999999999999999999999999999 999987543
Q ss_pred hhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhcC
Q 038019 721 DMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLAGD 787 (866)
Q Consensus 721 ~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~~~ 787 (866)
..+ ....+ ..+ ..+....... ..+.++...|++.+|++||++.|+++.|+..
T Consensus 213 ~~~---~~~~~----~~~-----~~~~~~~~~~---~~~~~li~~~l~~~p~~Rps~~~ll~~l~~l 264 (269)
T 4hcu_A 213 NSE---VVEDI----STG-----FRLYKPRLAS---THVYQIMNHCWRERPEDRPAFSRLLRQLAEI 264 (269)
T ss_dssp HHH---HHHHH----HTT-----CCCCCCTTSC---HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred HHH---HHHHH----hcC-----ccCCCCCcCC---HHHHHHHHHHccCCcccCcCHHHHHHHHHHH
Confidence 322 11111 111 0111111112 2355566799999999999999999999854
|
| >3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 4hvd_A* 4hvg_A* 4hvh_A* 4hvi_A* 3pjc_A* 1yvj_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=9.9e-14 Score=150.83 Aligned_cols=141 Identities=23% Similarity=0.157 Sum_probs=92.6
Q ss_pred CCcccCHHHHHHHhcCCccccccCCCCceeE-EEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCCc
Q 038019 642 KPNIFGYAELRSATKDFNRSNKLGEGGYGPV-YKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSL 720 (866)
Q Consensus 642 ~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~v-y~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~ 720 (866)
..|++...+...++.|||.+..++....... .....||..|+|||.+....++.++||||||++++||+||+.|+....
T Consensus 155 p~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~g~~p~~~~~ 234 (327)
T 3lxl_A 155 ARNILVESEAHVKIADFGLAKLLPLDKDYYVVREPGQSPIFWYAPESLSDNIFSRQSDVWSFGVVLYELFTYCDKSCSPS 234 (327)
T ss_dssp GGGEEEEETTEEEECCGGGCEECCTTCSEEECSSCCCSCGGGSCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSHH
T ss_pred hhhEEECCCCCEEEcccccceecccCCccceeeccCCccccccCHHHhccCCCChHHhHHHHHHHHHHHHhCCCCCcccc
Confidence 3467776777788999999998865443221 123357888999999999999999999999999999999999976422
Q ss_pred hhh--------hhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhcCcCC
Q 038019 721 DME--------KIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLAGDIEV 790 (866)
Q Consensus 721 ~~~--------~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~~~~~~ 790 (866)
... .......+......+.. +.. +......+.+++..|++.||++||+|.||++.|+.....
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~---~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~~~~~ 304 (327)
T 3lxl_A 235 AEFLRMMGCERDVPALSRLLELLEEGQR-----LPA---PPACPAEVHELMKLCWAPSPQDRPSFSALGPQLDMLWSG 304 (327)
T ss_dssp HHHHHHCC----CCHHHHHHHHHHTTCC-----CCC---CTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHC---
T ss_pred chhhhhcccccccccHHHHHHHhhcccC-----CCC---CCcccHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHhh
Confidence 110 00001111111111110 111 111223455667799999999999999999999976543
|
| >2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.35 E-value=8.8e-13 Score=142.63 Aligned_cols=133 Identities=17% Similarity=0.260 Sum_probs=83.1
Q ss_pred CcccCHHHHHHHhcCCccccccCCCCc---eeEEEeecCCCCccCceeeec---------CCCCchhHHHHHHHHHHHHH
Q 038019 643 PNIFGYAELRSATKDFNRSNKLGEGGY---GPVYKVTANSYGYLAPEYAMR---------GHLTEKADVFSFGVVALEII 710 (866)
Q Consensus 643 ~~~~~~~~~~~~~~dF~~~~~lg~g~~---g~vy~~~~gt~gY~aPE~~~~---------~~~t~ksDVySfGvvLlEl~ 710 (866)
.|++.. +...++.|||.+..++.... ........||.+|+|||.+.. ..++.++||||||++++||+
T Consensus 159 ~NIl~~-~~~~~l~Dfg~~~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~Di~slG~il~el~ 237 (319)
T 2y4i_B 159 KNVFYD-NGKVVITDFGLFSISGVLQAGRREDKLRIQNGWLCHLAPEIIRQLSPDTEEDKLPFSKHSDVFALGTIWYELH 237 (319)
T ss_dssp TTEEEC---CCEECCCSCCC----------CCSCBCCSGGGGTSCHHHHSCBSCC--CCCSCCCHHHHHHHHHHHHHHHH
T ss_pred hhEEEe-CCCEEEeecCCccccccccccccccccccCCCcccccChHHhhhccccccccccCCCchhhHHHHHHHHHHHH
Confidence 356554 45678899998877653221 111223458999999998864 45899999999999999999
Q ss_pred hcCCCCCCCchhhhhcHHHHHHHHhhcCCcccccCCccc--ccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhcCc
Q 038019 711 SGRASSDKSLDMEKIYLLEWAWNLHENNQSFGLVDPTLT--EFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLAGDI 788 (866)
Q Consensus 711 tg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~--~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~~~~ 788 (866)
||+.|+....... .. +. ...+ ..+.+. ..+ ..+.+++..|++.+|++||++.+|+++|+...
T Consensus 238 ~g~~p~~~~~~~~---~~---~~-~~~~-----~~~~~~~~~~~----~~l~~li~~~l~~~p~~Rpt~~~l~~~l~~l~ 301 (319)
T 2y4i_B 238 AREWPFKTQPAEA---II---WQ-MGTG-----MKPNLSQIGMG----KEISDILLFCWAFEQEERPTFTKLMDMLEKLP 301 (319)
T ss_dssp HSSCSSSSCCHHH---HH---HH-HHTT-----CCCCCCCSSCC----TTHHHHHHHHHCSSTTTSCCHHHHHHHHTTC-
T ss_pred hCCCCCCCCCHHH---HH---HH-hccC-----CCCCCCcCCCC----HHHHHHHHHHhcCChhhCcCHHHHHHHHHHHH
Confidence 9999997543321 11 11 1111 112111 111 23456667999999999999999999999765
Q ss_pred CCCC
Q 038019 789 EVGT 792 (866)
Q Consensus 789 ~~~~ 792 (866)
....
T Consensus 302 ~~~~ 305 (319)
T 2y4i_B 302 KRNR 305 (319)
T ss_dssp ----
T ss_pred Hhhc
Confidence 5433
|
| >3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* 4e20_A* 4e1z_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=1.3e-14 Score=157.16 Aligned_cols=137 Identities=21% Similarity=0.200 Sum_probs=91.8
Q ss_pred CcccCHHHHHHHhcCCccccccCCCCce-eEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCCch
Q 038019 643 PNIFGYAELRSATKDFNRSNKLGEGGYG-PVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSLD 721 (866)
Q Consensus 643 ~~~~~~~~~~~~~~dF~~~~~lg~g~~g-~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~ 721 (866)
.|++...+...++.|||.+..+..+... .......||..|+|||.+....++.++||||||++++||+||+.|+.....
T Consensus 163 ~Nil~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~g~~p~~~~~~ 242 (318)
T 3lxp_A 163 RNVLLDNDRLVKIGDFGLAKAVPEGHEYYRVREDGDSPVFWYAPECLKEYKFYYASDVWSFGVTLYELLTHCDSSQSPPT 242 (318)
T ss_dssp GGEEECTTCCEEECCGGGCEECCTTCSEEEC---CCCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSHHH
T ss_pred heEEEcCCCCEEECCccccccccccccccccccCCCCCceeeChHHhcCCCCCcHHHHHHHHHHHHHHHhCCCcccccch
Confidence 3666666667789999999988765422 223344688899999999999999999999999999999999999864221
Q ss_pred hhhhcH---------HHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhcCc
Q 038019 722 MEKIYL---------LEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLAGDI 788 (866)
Q Consensus 722 ~~~~~l---------~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~~~~ 788 (866)
. .... ..........+.. +.. +......+.+++..|++.+|++||++.||++.|+...
T Consensus 243 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~---~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~l~ 309 (318)
T 3lxp_A 243 K-FLELIGIAQGQMTVLRLTELLERGER-----LPR---PDKCPAEVYHLMKNCWETEASFRPTFENLIPILKTVH 309 (318)
T ss_dssp H-HHHHHCSCCHHHHHHHHHHHHHTTCC-----CCC---CTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred h-hhhhhcccccchhHHHHHHHHhcccC-----CCC---CccccHHHHHHHHHHcCCCcccCcCHHHHHHHHHHHH
Confidence 1 0000 0111111111111 111 1112234566777999999999999999999998643
|
| >3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.35 E-value=2.2e-13 Score=148.49 Aligned_cols=124 Identities=20% Similarity=0.228 Sum_probs=87.9
Q ss_pred cCCCCCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCC-CchhHHHHHHHHHHHHHhcCCCC
Q 038019 638 GIGSKPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHL-TEKADVFSFGVVALEIISGRASS 716 (866)
Q Consensus 638 ~~~~~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~-t~ksDVySfGvvLlEl~tg~~p~ 716 (866)
......|++...+...++.|||.++.+..+.+ .....||+.|+|||.+.+..+ +.++|||||||+++||+||+.|+
T Consensus 132 ~Dlkp~NIll~~~~~~kl~DFG~s~~~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~Pf 208 (336)
T 3h4j_B 132 RDLKPENLLLDDNLNVKIADFGLSNIMTDGNF---LKTSCGSPNYAAPEVINGKLYAGPEVDVWSCGIVLYVMLVGRLPF 208 (336)
T ss_dssp CCCSTTTEEECTTCCEEECCSSCTBTTTTSBT---TCCCTTSTTTSCGGGSCCSGGGCHHHHHHHHHHHHHHHHHSSCSS
T ss_pred cCCchhhEEEcCCCCEEEEEeccceeccCCcc---cccccCCcCcCCHHHHcCCCCCCCccchhHHHHHHHHHHhCCCCC
Confidence 33334477777777788999999998876543 234579999999999987765 78999999999999999999999
Q ss_pred CCCchhhhhcHHHHHHHHhhcCCcccccC--CcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 717 DKSLDMEKIYLLEWAWNLHENNQSFGLVD--PTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 717 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~d--~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
+....... ...+.. ..+...... .+.++...|++.||.+|||+.|+++
T Consensus 209 ~~~~~~~~---------------~~~i~~~~~~~p~~~s~---~~~~li~~~L~~dP~~Rpt~~eil~ 258 (336)
T 3h4j_B 209 DDEFIPNL---------------FKKVNSCVYVMPDFLSP---GAQSLIRRMIVADPMQRITIQEIRR 258 (336)
T ss_dssp BCSSSTTC---------------BCCCCSSCCCCCTTSCH---HHHHHHHTTSCSSGGGSCCHHHHTT
T ss_pred CCccHHHH---------------HHHHHcCCCCCcccCCH---HHHHHHHHHcCCChhHCcCHHHHHh
Confidence 75332110 001111 111122222 3445666999999999999999975
|
| >3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} SCOP: d.144.1.7 PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ... | Back alignment and structure |
|---|
Probab=99.35 E-value=5.7e-13 Score=141.82 Aligned_cols=131 Identities=19% Similarity=0.170 Sum_probs=94.6
Q ss_pred CCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHh-cCCCCCCCc
Q 038019 642 KPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIIS-GRASSDKSL 720 (866)
Q Consensus 642 ~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~t-g~~p~~~~~ 720 (866)
..|++...+...++.|||.+..++.... ....+..+|+.|+|||......++.++||||||++++||+| |+.|+....
T Consensus 139 p~Nil~~~~~~~~l~Dfg~~~~~~~~~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~~g~~p~~~~~ 217 (288)
T 3kfa_A 139 ARNCLVGENHLVKVADFGLSRLMTGDTY-TAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGID 217 (288)
T ss_dssp GGGEEECGGGCEEECCCCGGGTSCSSSS-EEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCC
T ss_pred cceEEEcCCCCEEEccCccceeccCCcc-ccccCCccccCcCChhhhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCC
Confidence 3467776777788999999998875543 44455667889999999999999999999999999999999 999987543
Q ss_pred hhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhcCc
Q 038019 721 DMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLAGDI 788 (866)
Q Consensus 721 ~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~~~~ 788 (866)
... +.+.+.. + ..+...... ...+.++...|++.+|++||++.||+++|+...
T Consensus 218 ~~~---~~~~~~~----~-----~~~~~~~~~---~~~l~~li~~~l~~dp~~Rps~~~~~~~l~~~~ 270 (288)
T 3kfa_A 218 LSQ---VYELLEK----D-----YRMERPEGC---PEKVYELMRACWQWNPSDRPSFAEIHQAFETMF 270 (288)
T ss_dssp GGG---HHHHHHT----T-----CCCCCCTTC---CHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred HHH---HHHHHhc----c-----CCCCCCCCC---CHHHHHHHHHHhCCChhhCcCHHHHHHHHHHHH
Confidence 322 2222211 1 111111111 234556667999999999999999999998543
|
| >1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ... | Back alignment and structure |
|---|
Probab=99.35 E-value=1.7e-13 Score=145.16 Aligned_cols=131 Identities=22% Similarity=0.299 Sum_probs=92.3
Q ss_pred CcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHh-cCCCCCCCch
Q 038019 643 PNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIIS-GRASSDKSLD 721 (866)
Q Consensus 643 ~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~t-g~~p~~~~~~ 721 (866)
.|++..++...++.|||.+..+....+ ....+..+|..|+|||....+.++.++||||||++++||+| |+.|+.....
T Consensus 138 ~Nil~~~~~~~kl~Dfg~~~~~~~~~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~ 216 (279)
T 1qpc_A 138 ANILVSDTLSCKIADFGLARLIEDNEY-TAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPGMTN 216 (279)
T ss_dssp GGEEECTTSCEEECCCTTCEECSSSCE-ECCTTCCCCTTTSCHHHHHHCEECHHHHHHHHHHHHHHHHTTTCCSSTTCCH
T ss_pred hhEEEcCCCCEEECCCcccccccCccc-ccccCCCCccCccChhhhccCCCCchhhhHHHHHHHHHHHhCCCCCCcccCH
Confidence 466666666778999999988875442 12223457789999999998999999999999999999999 8999875433
Q ss_pred hhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhcCcC
Q 038019 722 MEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLAGDIE 789 (866)
Q Consensus 722 ~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~~~~~ 789 (866)
.+ +... ...+. .+...... ...+.+++..|++.+|++||++.+++++|+....
T Consensus 217 ~~---~~~~----~~~~~-----~~~~~~~~---~~~l~~li~~~l~~~p~~Rps~~~l~~~l~~~~~ 269 (279)
T 1qpc_A 217 PE---VIQN----LERGY-----RMVRPDNC---PEELYQLMRLCWKERPEDRPTFDYLRSVLEDFFT 269 (279)
T ss_dssp HH---HHHH----HHTTC-----CCCCCTTC---CHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred HH---HHHH----Hhccc-----CCCCcccc---cHHHHHHHHHHhccChhhCCCHHHHHHHHHHHHH
Confidence 22 2211 11111 11111111 2345566679999999999999999999986543
|
| >3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} SCOP: d.144.1.7 PDB: 2qkr_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=3.4e-13 Score=145.46 Aligned_cols=136 Identities=15% Similarity=0.163 Sum_probs=87.8
Q ss_pred CCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeec-CCCCchhHHHHHHHHHHHHHhcCCCCCCCc
Q 038019 642 KPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMR-GHLTEKADVFSFGVVALEIISGRASSDKSL 720 (866)
Q Consensus 642 ~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~-~~~t~ksDVySfGvvLlEl~tg~~p~~~~~ 720 (866)
..|++...+...++.|||.++.++... ..+....||..|+|||.+.+ ..++.++|||||||+++||+||+.|+....
T Consensus 147 p~NIl~~~~~~~kl~Dfg~a~~~~~~~--~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~ 224 (311)
T 3niz_A 147 PQNLLINSDGALKLADFGLARAFGIPV--RSYTHEVVTLWYRAPDVLMGSKKYSTSVDIWSIGCIFAEMITGKPLFPGVT 224 (311)
T ss_dssp GGGEEECTTCCEEECCCTTCEETTSCC--C---CCCCCCTTCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSS
T ss_pred hHhEEECCCCCEEEccCcCceecCCCc--ccccCCcccCCcCCHHHhcCCCCCCchHHhHHHHHHHHHHHhCCCCCCCCC
Confidence 346766666678899999998876442 23445578999999999875 568999999999999999999999997654
Q ss_pred hhhhhcHHHHHHHHhhcCC---c-------------ccccCCcc-cccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 721 DMEKIYLLEWAWNLHENNQ---S-------------FGLVDPTL-TEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 721 ~~~~~~l~~~~~~~~~~~~---~-------------~~~~d~~l-~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
..+. ...+........ . .+..+... .........++.++...|++.||++|||+.|+++
T Consensus 225 ~~~~---~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~ 300 (311)
T 3niz_A 225 DDDQ---LPKIFSILGTPNPREWPQVQELPLWKQRTFQVFEKKPWSSIIPGFCQEGIDLLSNMLCFDPNKRISARDAMN 300 (311)
T ss_dssp TTTH---HHHHHHHHCCCCTTTSGGGTTSHHHHSCCCCCCCCCCHHHHSTTCCHHHHHHHHHHSCSCTTTSCCHHHHHT
T ss_pred hHHH---HHHHHHHHCCCChHHhhhhhccchhhhcccccccCCcHHHhCcccCHHHHHHHHHHcCCChhHCCCHHHHhc
Confidence 3322 222222111100 0 00011100 0000111234566777999999999999999975
|
| >3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=2.9e-13 Score=146.90 Aligned_cols=128 Identities=16% Similarity=0.240 Sum_probs=89.1
Q ss_pred CcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCC-CchhHHHHHHHHHHHHHhcCCCCCCCch
Q 038019 643 PNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHL-TEKADVFSFGVVALEIISGRASSDKSLD 721 (866)
Q Consensus 643 ~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~-t~ksDVySfGvvLlEl~tg~~p~~~~~~ 721 (866)
.|++...+...++.|||.+..+.............||..|+|||++....+ +.++|||||||+++||+||+.|+.....
T Consensus 134 ~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~ 213 (323)
T 3tki_A 134 ENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSD 213 (323)
T ss_dssp GGEEECTTCCEEECCCTTCEECEETTEECCBCSCCSCGGGSCHHHHHCSSBCHHHHHHHHHHHHHHHHHHSSCSCSSSCT
T ss_pred HHEEEeCCCCEEEEEeeccceeccCCcccccCCCccCcCccCcHHhccCCCCCCcccHHHHHHHHHHHHhCCCCCCCCch
Confidence 366666666788999999988766555444556689999999999987765 7899999999999999999999975432
Q ss_pred hhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 038019 722 MEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAM 783 (866)
Q Consensus 722 ~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~ 783 (866)
.. .....|... . ...++ ..... ..+.++...|++.||++|||+.|+++.
T Consensus 214 ~~-~~~~~~~~~----~---~~~~~-~~~~~----~~~~~li~~~L~~dP~~R~t~~eil~h 262 (323)
T 3tki_A 214 SC-QEYSDWKEK----K---TYLNP-WKKID----SAPLALLHKILVENPSARITIPDIKKD 262 (323)
T ss_dssp TS-HHHHHHHTT----C---TTSTT-GGGSC----HHHHHHHHHHSCSSTTTSCCHHHHTTC
T ss_pred HH-HHHHHHhcc----c---ccCCc-cccCC----HHHHHHHHHHccCChhhCcCHHHHhhC
Confidence 21 122222111 0 00111 11112 234456679999999999999998753
|
| >3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.34 E-value=2.9e-13 Score=147.53 Aligned_cols=132 Identities=12% Similarity=0.057 Sum_probs=75.2
Q ss_pred CCCCcccCHHHHHHHhcCCccccccCCCCceeE----------EEeecCCCCccCceee---ecCCCCchhHHHHHHHHH
Q 038019 640 GSKPNIFGYAELRSATKDFNRSNKLGEGGYGPV----------YKVTANSYGYLAPEYA---MRGHLTEKADVFSFGVVA 706 (866)
Q Consensus 640 ~~~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~v----------y~~~~gt~gY~aPE~~---~~~~~t~ksDVySfGvvL 706 (866)
....|++...+...++.|||.+..++....... .....||..|+|||.+ ....++.++|||||||++
T Consensus 164 ikp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~~~Dv~slG~il 243 (337)
T 3ll6_A 164 LKVENLLLSNQGTIKLCDFGSATTISHYPDYSWSAQRRALVEEEITRNTTPMYRTPEIIDLYSNFPIGEKQDIWALGCIL 243 (337)
T ss_dssp CCGGGCEECTTSCEEBCCCTTCBCCSSCC-------------------------------CCTTSCSSHHHHHHHHHHHH
T ss_pred CCcccEEECCCCCEEEecCccceeccccCcccccccccccchhhccccCCCCcCChhhhhccccCCCChHHhHHHHHHHH
Confidence 333477777777788999999998875432111 1133589999999998 567889999999999999
Q ss_pred HHHHhcCCCCCCCchhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhc
Q 038019 707 LEIISGRASSDKSLDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLAG 786 (866)
Q Consensus 707 lEl~tg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~~ 786 (866)
+||+||+.|+....... .. .. . .......... ..+.+++..|++.+|++||++.||++.|+.
T Consensus 244 ~el~~g~~p~~~~~~~~---~~---~~-----~----~~~~~~~~~~---~~~~~li~~~l~~~p~~Rps~~e~l~~l~~ 305 (337)
T 3ll6_A 244 YLLCFRQHPFEDGAKLR---IV---NG-----K----YSIPPHDTQY---TVFHSLIRAMLQVNPEERLSIAEVVHQLQE 305 (337)
T ss_dssp HHHHHSSCCC---------------------------CCCCTTCCSS---GGGHHHHHHHSCSSGGGSCCHHHHHHHHHH
T ss_pred HHHHhCCCCCcchhHHH---hh---cC-----c----ccCCcccccc---hHHHHHHHHHccCChhhCcCHHHHHHHHHH
Confidence 99999999986422110 00 00 0 0000001111 124456679999999999999999999986
Q ss_pred CcC
Q 038019 787 DIE 789 (866)
Q Consensus 787 ~~~ 789 (866)
...
T Consensus 306 ~~~ 308 (337)
T 3ll6_A 306 IAA 308 (337)
T ss_dssp HHH
T ss_pred HHh
Confidence 544
|
| >3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A | Back alignment and structure |
|---|
Probab=99.33 E-value=2.4e-13 Score=144.38 Aligned_cols=130 Identities=18% Similarity=0.231 Sum_probs=90.7
Q ss_pred CCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHh-cCCCCCCCc
Q 038019 642 KPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIIS-GRASSDKSL 720 (866)
Q Consensus 642 ~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~t-g~~p~~~~~ 720 (866)
..|++...+...++.|||.+..+..... ....+..+|++|+|||......++.++||||||++++||+| |+.|+....
T Consensus 148 p~Nili~~~~~~kl~Dfg~~~~~~~~~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~~l~t~g~~p~~~~~ 226 (283)
T 3gen_A 148 ARNCLVNDQGVVKVSDFGLSRYVLDDEY-TSSVGSKFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMPYERFT 226 (283)
T ss_dssp GGGEEECTTSCEEECSTTGGGGBCCHHH-HSTTSTTSCGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTTCCTTTTSC
T ss_pred cceEEEcCCCCEEEcccccccccccccc-ccccCCccCcccCCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCccccC
Confidence 3466666666788999999987754322 11223456788999999999999999999999999999999 999987544
Q ss_pred hhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhcC
Q 038019 721 DMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLAGD 787 (866)
Q Consensus 721 ~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~~~ 787 (866)
..+ .... ...+ ..+....... ..+.++...|++.+|++||++.|+++.|+..
T Consensus 227 ~~~---~~~~----~~~~-----~~~~~~~~~~---~~l~~li~~~l~~~p~~Rps~~~ll~~L~~~ 278 (283)
T 3gen_A 227 NSE---TAEH----IAQG-----LRLYRPHLAS---EKVYTIMYSCWHEKADERPTFKILLSNILDV 278 (283)
T ss_dssp HHH---HHHH----HHTT-----CCCCCCTTCC---HHHHHHHHHTTCSSGGGSCCHHHHHHHHHHH
T ss_pred hhH---HHHH----Hhcc-----cCCCCCCcCC---HHHHHHHHHHccCChhHCcCHHHHHHHHHHH
Confidence 322 1111 1111 1111111112 2455667799999999999999999999854
|
| >1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=5.4e-13 Score=142.39 Aligned_cols=132 Identities=20% Similarity=0.169 Sum_probs=91.4
Q ss_pred CCcccCHHHHHHHhcCCccccccCCCCc-eeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHh-cCCCCCCC
Q 038019 642 KPNIFGYAELRSATKDFNRSNKLGEGGY-GPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIIS-GRASSDKS 719 (866)
Q Consensus 642 ~~~~~~~~~~~~~~~dF~~~~~lg~g~~-g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~t-g~~p~~~~ 719 (866)
..|++...+...++.|||.+..+..... ........+|..|+|||.+....++.++||||||++++||+| |+.|+...
T Consensus 145 p~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~ 224 (291)
T 1xbb_A 145 ARNVLLVTQHYAKISDFGLSKALRADENYYKAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGM 224 (291)
T ss_dssp GGGEEEEETTEEEECCCTTCEECCTTCSEEEC----CCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCCSSTTC
T ss_pred cceEEEeCCCcEEEccCCcceeeccCCCcccccccCCCCceeeChHHhccCCCChhhhHHHHHHHHHHHHhcCCCCCCCC
Confidence 3467766666778999999988765432 111222356789999999998899999999999999999999 99998764
Q ss_pred chhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhcCc
Q 038019 720 LDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLAGDI 788 (866)
Q Consensus 720 ~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~~~~ 788 (866)
...+ +... ...+.. +.... .....+.+++..|++.||++||++.+|++.|+...
T Consensus 225 ~~~~---~~~~----~~~~~~-----~~~~~---~~~~~l~~li~~~l~~dp~~Rps~~~l~~~L~~~~ 278 (291)
T 1xbb_A 225 KGSE---VTAM----LEKGER-----MGCPA---GCPREMYDLMNLCWTYDVENRPGFAAVELRLRNYY 278 (291)
T ss_dssp CHHH---HHHH----HHTTCC-----CCCCT---TCCHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHH
T ss_pred CHHH---HHHH----HHcCCC-----CCCCC---CCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHH
Confidence 4322 2221 222211 11111 11234556677999999999999999999998644
|
| >3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II} | Back alignment and structure |
|---|
Probab=99.33 E-value=1.3e-13 Score=153.71 Aligned_cols=82 Identities=24% Similarity=0.247 Sum_probs=61.5
Q ss_pred CCCCcccCHHHHHHHhcCCccccccCCCC-------------------ceeEEEeecCCCCccCceeeec-CCCCchhHH
Q 038019 640 GSKPNIFGYAELRSATKDFNRSNKLGEGG-------------------YGPVYKVTANSYGYLAPEYAMR-GHLTEKADV 699 (866)
Q Consensus 640 ~~~~~~~~~~~~~~~~~dF~~~~~lg~g~-------------------~g~vy~~~~gt~gY~aPE~~~~-~~~t~ksDV 699 (866)
....|++...+...++.|||.++.+.... .........||..|+|||.+.+ ..++.++||
T Consensus 135 lkp~NIll~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~Di 214 (388)
T 3oz6_A 135 MKPSNILLNAECHVKVADFGLSRSFVNIRRVTNNIPLSINENTENFDDDQPILTDYVATRWYRAPEILLGSTKYTKGIDM 214 (388)
T ss_dssp CCGGGEEECTTCCEEECCCTTCEESSSCCCCCCCGGGCCC---------------CCCGGGGCCHHHHTTCCCCCTHHHH
T ss_pred CCHHHeEEcCCCCEEecCCcccccccccccccccccccccccccccccccccccCCcccCCcCCHHHhcCCCCCCChhhH
Confidence 33347777777778899999998775311 1223344579999999999876 679999999
Q ss_pred HHHHHHHHHHHhcCCCCCCCch
Q 038019 700 FSFGVVALEIISGRASSDKSLD 721 (866)
Q Consensus 700 ySfGvvLlEl~tg~~p~~~~~~ 721 (866)
|||||+++||+||+.||.....
T Consensus 215 wSlG~il~ell~g~~pf~~~~~ 236 (388)
T 3oz6_A 215 WSLGCILGEILCGKPIFPGSST 236 (388)
T ss_dssp HHHHHHHHHHHHSSCSCCCSSH
T ss_pred HHHHHHHHHHHhCCCCCCCCCH
Confidence 9999999999999999976543
|
| >3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A | Back alignment and structure |
|---|
Probab=99.33 E-value=2.8e-13 Score=147.10 Aligned_cols=133 Identities=15% Similarity=0.071 Sum_probs=67.8
Q ss_pred CcccCHHHH---HHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCC
Q 038019 643 PNIFGYAEL---RSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKS 719 (866)
Q Consensus 643 ~~~~~~~~~---~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~ 719 (866)
.|++...+- ..++.|||.++....+. .......||.+|+|||.+....++.++|||||||+++||+||+.|+...
T Consensus 135 ~NIll~~~~~~~~~kl~Dfg~a~~~~~~~--~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~ 212 (325)
T 3kn6_A 135 ENLLFTDENDNLEIKIIDFGFARLKPPDN--QPLKTPCFTLHYAAPELLNQNGYDESCDLWSLGVILYTMLSGQVPFQSH 212 (325)
T ss_dssp GGEEEEC----CEEEECCCTTCEECCC------------------------CCCCHHHHHHHHHHHHHHHHHSSCTTC--
T ss_pred HHEEEecCCCcccEEEeccccceecCCCC--CcccccCCCcCccCHHHhcCCCCCCccchHHHHHHHHHHHhCCCCCCCC
Confidence 366554332 56889999998776543 2334556899999999999999999999999999999999999999754
Q ss_pred chhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 720 LDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 720 ~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
.......-...+...+..+... .++. ........+.++...|++.||++||++.||++
T Consensus 213 ~~~~~~~~~~~~~~~i~~~~~~--~~~~---~~~~~s~~~~~li~~~L~~dP~~Rpt~~ell~ 270 (325)
T 3kn6_A 213 DRSLTCTSAVEIMKKIKKGDFS--FEGE---AWKNVSQEAKDLIQGLLTVDPNKRLKMSGLRY 270 (325)
T ss_dssp -----CCCHHHHHHHHTTTCCC--CCSH---HHHTSCHHHHHHHHHHHCCCTTTCCCTTTSTT
T ss_pred ccccccccHHHHHHHHHcCCCC--CCcc---cccCCCHHHHHHHHHHCCCChhHCCCHHHHhc
Confidence 3211111111222222222110 0000 00111234556677999999999999998863
|
| >3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=2.4e-13 Score=150.67 Aligned_cols=133 Identities=11% Similarity=-0.063 Sum_probs=87.4
Q ss_pred ccCCCCCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeec--CCCCchhHHHHHHHHHHHHHhcCC
Q 038019 637 VGIGSKPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMR--GHLTEKADVFSFGVVALEIISGRA 714 (866)
Q Consensus 637 ~~~~~~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~--~~~t~ksDVySfGvvLlEl~tg~~ 714 (866)
|......|++...+...++.|||.++.++.. .....+|++|+|||++.. ..++.++|||||||+++||+||+.
T Consensus 217 HrDikp~NIll~~~~~~kL~DFG~a~~~~~~-----~~~~~~t~~y~aPE~~~~~~~~~~~~~DiwSlG~il~elltg~~ 291 (371)
T 3q60_A 217 HGHFTPDNLFIMPDGRLMLGDVSALWKVGTR-----GPASSVPVTYAPREFLNASTATFTHALNAWQLGLSIYRVWCLFL 291 (371)
T ss_dssp ETTCSGGGEEECTTSCEEECCGGGEEETTCE-----EEGGGSCGGGCCHHHHTCSEEECCHHHHHHHHHHHHHHHHHSSC
T ss_pred cCcCCHHHEEECCCCCEEEEecceeeecCCC-----ccCccCCcCCcChhhccCCCCCcCccccHHHHHHHHHHHHhCCC
Confidence 3333334777777778899999999987632 114467799999999987 789999999999999999999999
Q ss_pred CCCCCchhhhhcHHHHHHHHhhcCCcccccCCccc-ccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 715 SSDKSLDMEKIYLLEWAWNLHENNQSFGLVDPTLT-EFNDKEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 715 p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~-~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
|+......... .+.............. .........+.++...|++.||++|||+.|+++
T Consensus 292 Pf~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~ 352 (371)
T 3q60_A 292 PFGLVTPGIKG--------SWKRPSLRVPGTDSLAFGSCTPLPDFVKTLIGRFLNFDRRRRLLPLEAME 352 (371)
T ss_dssp STTBCCTTCTT--------CCCBCCTTSCCCCSCCCTTSSCCCHHHHHHHHHHTCSSTTTCCCHHHHTT
T ss_pred CCCCcCccccc--------chhhhhhhhccccccchhhccCCCHHHHHHHHHHcCCChhhCCCHHHHhc
Confidence 99754322110 0000000000111110 000111234555666999999999999999863
|
| >1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7 | Back alignment and structure |
|---|
Probab=99.33 E-value=4.5e-13 Score=142.68 Aligned_cols=134 Identities=18% Similarity=0.182 Sum_probs=93.4
Q ss_pred CCcccCHHHHHHHhcCCccccccCCCCce-eEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHh-cCCCCCCC
Q 038019 642 KPNIFGYAELRSATKDFNRSNKLGEGGYG-PVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIIS-GRASSDKS 719 (866)
Q Consensus 642 ~~~~~~~~~~~~~~~dF~~~~~lg~g~~g-~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~t-g~~p~~~~ 719 (866)
..|++...+...++.|||.+..++..... .......||++|+|||.+....++.++||||||++++||+| |+.|+...
T Consensus 138 p~Nili~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~ 217 (287)
T 1u59_A 138 ARNVLLVNRHYAKISDFGLSKALGADDSYYTARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKM 217 (287)
T ss_dssp GGGEEEEETTEEEECCCTTCEECTTCSCEECCCCSSCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTC
T ss_pred hheEEEcCCCCEEECcccceeeeccCcceeeccccccccccccCHHHhccCCCCchhhHHHHHHHHHHHHcCCCCCcccC
Confidence 34677666667789999999888654321 11122356889999999998899999999999999999999 99998754
Q ss_pred chhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhcCcCC
Q 038019 720 LDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLAGDIEV 790 (866)
Q Consensus 720 ~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~~~~~~ 790 (866)
...+ +...+ ..+.. +.... .....+.+++..|++.+|++||++.+|++.|+.....
T Consensus 218 ~~~~---~~~~i----~~~~~-----~~~~~---~~~~~l~~li~~~l~~~p~~Rps~~~l~~~l~~~~~~ 273 (287)
T 1u59_A 218 KGPE---VMAFI----EQGKR-----MECPP---ECPPELYALMSDCWIYKWEDRPDFLTVEQRMRACYYS 273 (287)
T ss_dssp CTHH---HHHHH----HTTCC-----CCCCT---TCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred CHHH---HHHHH----hcCCc-----CCCCC---CcCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHh
Confidence 4322 22222 11211 11111 1123455666799999999999999999999865443
|
| >3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=5.9e-13 Score=151.76 Aligned_cols=143 Identities=17% Similarity=0.100 Sum_probs=87.2
Q ss_pred ccCCCCCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCC
Q 038019 637 VGIGSKPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASS 716 (866)
Q Consensus 637 ~~~~~~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~ 716 (866)
|+.....|++...+...++.|||.++.++.+.. .....||.+|+|||.+.+..++.++||||+||+++||++|+.||
T Consensus 187 HrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~ell~g~~pF 263 (464)
T 3ttj_A 187 HRDLKPSNIVVKSDCTLKILDFGLARTAGTSFM---MTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKILF 263 (464)
T ss_dssp CCCCCGGGEEECTTSCEEECCCCCC-----CCC---C----CCCTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSS
T ss_pred cCCCChHhEEEeCCCCEEEEEEEeeeecCCCcc---cCCCcccccccCHHHHcCCCCCHHHHHHHHHHHHHHHHhCCCCC
Confidence 333333477777777889999999998876543 33457899999999999999999999999999999999999999
Q ss_pred CCCchhhhhcHHHH----------------HHHHhhcC-Ccc-----cccCCcc-c---ccCHHHHHHHHHHHHHccCCC
Q 038019 717 DKSLDMEKIYLLEW----------------AWNLHENN-QSF-----GLVDPTL-T---EFNDKEALRVIGVALLCTQTS 770 (866)
Q Consensus 717 ~~~~~~~~~~l~~~----------------~~~~~~~~-~~~-----~~~d~~l-~---~~~~~~~~~~~~la~~C~~~~ 770 (866)
......+....+.. +....... ... +.+...+ . +........+.++..+|++.|
T Consensus 264 ~g~~~~~~~~~i~~~lg~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dLl~~mL~~d 343 (464)
T 3ttj_A 264 PGRDYIDQWNKVIEQLGTPCPEFMKKLQPTVRNYVENRPKYAGLTFPKLFPDSLFPADSEHNKLKASQARDLLSKMLVID 343 (464)
T ss_dssp CCSSHHHHHHHHHHHHCSCCHHHHTTSCHHHHHHHTTSCCCCCCCHHHHSCGGGSCCSSHHHHHHHHHHHHHHHHHSCSS
T ss_pred CCCCHHHHHHHHHHhcCCCCHHHHHHcchhhhhHhhcccccCCCChHHhCcccccccccccccccCHHHHHHHHHHcCCC
Confidence 76443221111100 00000000 000 0000000 0 001112345677888999999
Q ss_pred CCCCCCHHHHHH
Q 038019 771 PMMRPPMSRVVA 782 (866)
Q Consensus 771 p~~RPsm~~V~~ 782 (866)
|++|||+.|+++
T Consensus 344 P~~R~ta~e~L~ 355 (464)
T 3ttj_A 344 PAKRISVDDALQ 355 (464)
T ss_dssp TTTSCCHHHHHT
T ss_pred hhhCCCHHHHhc
Confidence 999999999976
|
| >3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A | Back alignment and structure |
|---|
Probab=99.32 E-value=4.7e-13 Score=145.45 Aligned_cols=123 Identities=20% Similarity=0.248 Sum_probs=87.2
Q ss_pred CCCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCC-chhHHHHHHHHHHHHHhcCCCCCCC
Q 038019 641 SKPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLT-EKADVFSFGVVALEIISGRASSDKS 719 (866)
Q Consensus 641 ~~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t-~ksDVySfGvvLlEl~tg~~p~~~~ 719 (866)
...|++...+...++.|||.++.+..++.. ....||++|+|||.+.+..++ .++|||||||+++||+||+.|++..
T Consensus 141 kp~NIll~~~~~~kl~DFG~a~~~~~~~~~---~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~ 217 (328)
T 3fe3_A 141 KAENLLLDADMNIKIADFGFSNEFTVGGKL---DAFCGAPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLPFDGQ 217 (328)
T ss_dssp CGGGEEECTTSCEEECSTTCCGGGSSSCGG---GTTSSSGGGCCHHHHHTCCCCSHHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred CHHHEEEcCCCCEEEeeccCceecCCCCcc---ccccCCcceeCcccccCCCcCCchhhhhhhHHHHHHHHhCCCCCCCC
Confidence 334777777777889999999887765432 234689999999999887765 8999999999999999999999764
Q ss_pred chhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 720 LDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 720 ~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
...+ +.+.+ ..+.. .++..... .+.++...|++.||++|||+.|+++
T Consensus 218 ~~~~---~~~~i----~~~~~------~~p~~~s~---~~~~li~~~L~~dP~~R~t~~eil~ 264 (328)
T 3fe3_A 218 NLKE---LRERV----LRGKY------RIPFYMST---DCENLLKRFLVLNPIKRGTLEQIMK 264 (328)
T ss_dssp SHHH---HHHHH----HHCCC------CCCTTSCH---HHHHHHHHHCCSSTTTSCCHHHHTT
T ss_pred CHHH---HHHHH----HhCCC------CCCCCCCH---HHHHHHHHHCCCChhHCcCHHHHhc
Confidence 3221 11111 11111 11111222 3445666999999999999999875
|
| >2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=2.2e-13 Score=148.14 Aligned_cols=123 Identities=21% Similarity=0.249 Sum_probs=83.7
Q ss_pred HHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHh-cCCCCCCCchhhhhcHHHH
Q 038019 652 RSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIIS-GRASSDKSLDMEKIYLLEW 730 (866)
Q Consensus 652 ~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~t-g~~p~~~~~~~~~~~l~~~ 730 (866)
..++.|||.+..+.............||.+|+|||.+..+.++.++||||||++++||+| |+.|+...... .+.++
T Consensus 181 ~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~---~~~~~ 257 (327)
T 2yfx_A 181 VAKIGDFGMARDIYRASYYRKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGYMPYPSKSNQ---EVLEF 257 (327)
T ss_dssp CEEECCCHHHHHHHC------CCGGGSCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCHH---HHHHH
T ss_pred eEEECccccccccccccccccCCCcCCCcceeCHhHhcCCCCCchhhHHHHHHHHHHHHcCCCCCCCCcCHH---HHHHH
Confidence 467889998877655443222223467899999999999999999999999999999999 99998754322 12222
Q ss_pred HHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhcCcC
Q 038019 731 AWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLAGDIE 789 (866)
Q Consensus 731 ~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~~~~~ 789 (866)
+. .+.. +...... ...+.+++..|++.+|++||++.+|++.|+....
T Consensus 258 ~~----~~~~-----~~~~~~~---~~~l~~li~~~l~~dp~~Rps~~~ll~~l~~~~~ 304 (327)
T 2yfx_A 258 VT----SGGR-----MDPPKNC---PGPVYRIMTQCWQHQPEDRPNFAIILERIEYCTQ 304 (327)
T ss_dssp HH----TTCC-----CCCCTTC---CHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred Hh----cCCC-----CCCCCCC---CHHHHHHHHHHhcCChhhCcCHHHHHHHHHHHhc
Confidence 21 1111 1111111 2245566779999999999999999999986543
|
| >3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A | Back alignment and structure |
|---|
Probab=99.32 E-value=2.2e-13 Score=151.25 Aligned_cols=120 Identities=13% Similarity=0.019 Sum_probs=84.0
Q ss_pred ccCCCCCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecC-----------CCCchhHHHHHHHH
Q 038019 637 VGIGSKPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRG-----------HLTEKADVFSFGVV 705 (866)
Q Consensus 637 ~~~~~~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~-----------~~t~ksDVySfGvv 705 (866)
+......|++...+...++.|||.++..+. ......| .+|+|||++... .++.++|||||||+
T Consensus 229 HrDikp~NIll~~~~~~kL~DFG~a~~~~~-----~~~~~~g-~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DvwSlG~i 302 (377)
T 3byv_A 229 HTYLRPVDIVLDQRGGVFLTGFEHLVRDGA-----RVVSSVS-RGFEPPELEARRATISYHRDRRTLMTFSFDAWALGLV 302 (377)
T ss_dssp CSCCCGGGEEECTTCCEEECCGGGCEETTC-----EEECCCC-TTCCCHHHHHHHTSTHHHHCCEEECCHHHHHHHHHHH
T ss_pred cCCCCHHHEEEcCCCCEEEEechhheecCC-----cccCCCC-cCccChhhhcccccccccccccccCChhhhHHHHHHH
Confidence 333333477777777889999999987543 3445567 999999999887 89999999999999
Q ss_pred HHHHHhcCCCCCCCchhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 706 ALEIISGRASSDKSLDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 706 LlEl~tg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
++||+||+.|+........ ...+. +.....+ ..+.+++..|++.||++||++.|+++
T Consensus 303 l~elltg~~Pf~~~~~~~~---------------~~~~~-~~~~~~~----~~~~~li~~~L~~dp~~Rpt~~e~l~ 359 (377)
T 3byv_A 303 IYWIWCADLPITKDAALGG---------------SEWIF-RSCKNIP----QPVRALLEGFLRYPKEDRLLPLQAME 359 (377)
T ss_dssp HHHHHHSSCCC------CC---------------SGGGG-SSCCCCC----HHHHHHHHHHTCSSGGGCCCHHHHHT
T ss_pred HHHHHHCCCCCcccccccc---------------hhhhh-hhccCCC----HHHHHHHHHHcCCCchhCCCHHHHhh
Confidence 9999999999864322110 00111 1111122 23555667999999999999999975
|
| >2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.32 E-value=4.1e-13 Score=144.70 Aligned_cols=134 Identities=16% Similarity=0.122 Sum_probs=79.9
Q ss_pred CcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCCchh
Q 038019 643 PNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSLDM 722 (866)
Q Consensus 643 ~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~~ 722 (866)
.|++...+...++.|||.+........ ..+....||..|+|||.+....++.++||||||++++||+||+.|+......
T Consensus 163 ~NIl~~~~~~~kl~Dfg~~~~~~~~~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~ 241 (309)
T 2h34_A 163 ENILVSADDFAYLVDFGIASATTDEKL-TQLGNTVGTLYYMAPERFSESHATYRADIYALTCVLYECLTGSPPYQGDQLS 241 (309)
T ss_dssp GGEEECTTSCEEECSCCC-----------------CCGGGCCGGGTCC----CCCHHHHHHHHHHHHHHSSCSSCSCHHH
T ss_pred HHEEEcCCCCEEEecCccCcccccccc-ccccccCCCcCccCHHHHcCCCCCchHhHHHHHHHHHHHHHCCCCCCCchHH
Confidence 366666666778999999887765432 2233456899999999999999999999999999999999999999753221
Q ss_pred hhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCC-CHHHHHHHHhcCcCC
Q 038019 723 EKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRP-PMSRVVAMLAGDIEV 790 (866)
Q Consensus 723 ~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RP-sm~~V~~~L~~~~~~ 790 (866)
.......... ..+. .........+.++...|++.+|++|| ++.++++.|+.....
T Consensus 242 -------~~~~~~~~~~----~~~~--~~~~~~~~~l~~li~~~l~~dP~~Rp~s~~~l~~~l~~~l~~ 297 (309)
T 2h34_A 242 -------VMGAHINQAI----PRPS--TVRPGIPVAFDAVIARGMAKNPEDRYVTCGDLSAAAHAALAT 297 (309)
T ss_dssp -------HHHHHHHSCC----CCGG--GTSTTCCTHHHHHHHHHTCSSGGGSCSSHHHHHHHHHHTCC-
T ss_pred -------HHHHHhccCC----CCcc--ccCCCCCHHHHHHHHHhccCCHHHHHHhHHHHHHHHHHHHHh
Confidence 1111111110 0010 01111112345566699999999999 999999999976544
|
| >1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=5.9e-13 Score=148.67 Aligned_cols=126 Identities=13% Similarity=0.094 Sum_probs=84.4
Q ss_pred HHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCCchhhh---hcHH
Q 038019 652 RSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSLDMEK---IYLL 728 (866)
Q Consensus 652 ~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~~~~---~~l~ 728 (866)
..++.|||.+..++... ....||..|+|||.+.+..++.++|||||||+++||+||+.|+......+. ....
T Consensus 234 ~~kl~DfG~a~~~~~~~-----~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~~~~~~~~~~~~ 308 (397)
T 1wak_A 234 KVKIADLGNACWVHKHF-----TEDIQTRQYRSLEVLIGSGYNTPADIWSTACMAFELATGDYLFEPHSGEEYTRDEDHI 308 (397)
T ss_dssp CEEECCGGGCEETTBCS-----CSCCSCGGGCCHHHHHTSCCCTHHHHHHHHHHHHHHHHSSCSCCCCCCSSSCHHHHHH
T ss_pred ceEeccccccccccccC-----ccCCCCCcccCChhhcCCCCCcHHHHHHHHHHHHHHhhCCCCCCCCcccccCchHHHH
Confidence 46788999988776432 234689999999999999999999999999999999999999975442211 1111
Q ss_pred HHHHHHhh--------cC-----------CcccccCCcc----------cccCHHHHHHHHHHHHHccCCCCCCCCCHHH
Q 038019 729 EWAWNLHE--------NN-----------QSFGLVDPTL----------TEFNDKEALRVIGVALLCTQTSPMMRPPMSR 779 (866)
Q Consensus 729 ~~~~~~~~--------~~-----------~~~~~~d~~l----------~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~ 779 (866)
........ .+ ....+.+... .....+....+.++..+|++.||++|||+.|
T Consensus 309 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e 388 (397)
T 1wak_A 309 ALIIELLGKVPRKLIVAGKYSKEFFTKKGDLKHITKLKPWGLFEVLVEKYEWSQEEAAGFTDFLLPMLELIPEKRATAAE 388 (397)
T ss_dssp HHHHHHHCSCCHHHHHHCTTGGGTBCTTSSBSSCCCCCCCCHHHHHHHTSCCCHHHHHHHHHHHGGGGCSSGGGSCCHHH
T ss_pred HHHHHhcCCCChHHhhcccccccccCCccccccccccCCcchhHhhhhhcccchhhHHHHHHHHHHHhccChhhcCCHHH
Confidence 11111100 00 0000000000 0123455667788899999999999999999
Q ss_pred HHH
Q 038019 780 VVA 782 (866)
Q Consensus 780 V~~ 782 (866)
|++
T Consensus 389 ~l~ 391 (397)
T 1wak_A 389 CLR 391 (397)
T ss_dssp HHT
T ss_pred Hhh
Confidence 975
|
| >4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.32 E-value=1.3e-12 Score=141.45 Aligned_cols=137 Identities=10% Similarity=0.045 Sum_probs=91.0
Q ss_pred HHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeee--------cCCCCchhHHHHHHHHHHHHHhcCCCCCCC
Q 038019 648 YAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAM--------RGHLTEKADVFSFGVVALEIISGRASSDKS 719 (866)
Q Consensus 648 ~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~--------~~~~t~ksDVySfGvvLlEl~tg~~p~~~~ 719 (866)
..+...++.|||.++.+..+.. +....||.+|+|||.+. ...++.++|||||||+++||+||+.|+...
T Consensus 150 ~~~~~~kL~Dfg~a~~~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~ 226 (319)
T 4euu_A 150 DGQSVYKLTDFGAARELEDDEQ---FVSLYGTEEYLHPDMYERAVLRKDHQKKYGATVDLWSIGVTFYHAATGSLPFRPF 226 (319)
T ss_dssp TSCEEEEECCCTTCEECCTTCC---BCCCCSCGGGCCHHHHHHHTSCCCCCCCBCTTHHHHHHHHHHHHHHHSSCSEECT
T ss_pred CCCceEEEccCCCceecCCCCc---eeecccCCCccCHHHhhhccccccccCCCCcHHHHHHHHHHHHHHHhCCCCCCCC
Confidence 4444567899999988866532 23456899999999876 578999999999999999999999998754
Q ss_pred chhh-hhcHHHHHHHHhhcCCcccc---cC------Ccc---cccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhc
Q 038019 720 LDME-KIYLLEWAWNLHENNQSFGL---VD------PTL---TEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLAG 786 (866)
Q Consensus 720 ~~~~-~~~l~~~~~~~~~~~~~~~~---~d------~~l---~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~~ 786 (866)
.... .......+...........+ .+ +.+ ..........+..+...|++.||++|||+.|+++....
T Consensus 227 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~~R~s~~ell~h~~d 306 (319)
T 4euu_A 227 EGPRRNKEVMYKIITGKPSGAISGVQKAENGPIDWSGDMPVSCSLSRGLQVLLTPVLANILEADQEKCWGFDQFFAETSD 306 (319)
T ss_dssp TCGGGCHHHHHHHHHHCCTTCCEEEECSTTCCEEEESSCCTTCSSCHHHHHHHHHHHHHHSCCCTTTSCCHHHHHHHHHH
T ss_pred CccchhHHHHHHHhcCCCcccchhhhcccCCccccCccCCcccccchhHHHHhHHHHHHhccCChhhhccHHHhhhccHH
Confidence 3222 11222222221111111110 00 111 12334445556678889999999999999999998874
Q ss_pred C
Q 038019 787 D 787 (866)
Q Consensus 787 ~ 787 (866)
.
T Consensus 307 ~ 307 (319)
T 4euu_A 307 I 307 (319)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.32 E-value=8.6e-13 Score=145.76 Aligned_cols=118 Identities=11% Similarity=0.044 Sum_probs=87.0
Q ss_pred HHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCCchhhhhcHHH
Q 038019 650 ELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSLDMEKIYLLE 729 (866)
Q Consensus 650 ~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~~~~~~l~~ 729 (866)
+...++.|||.++.+....-+..+....||.+|||||++.+..++.++|||||||+++||+||+.|+.......
T Consensus 219 ~~~~kl~DFG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~~~~------ 292 (365)
T 3e7e_A 219 SAGLALIDLGQSIDMKLFPKGTIFTAKCETSGFQCVEMLSNKPWNYQIDYFGVAATVYCMLFGTYMKVKNEGGE------ 292 (365)
T ss_dssp CTTEEECCCTTCEEGGGSCTTEEECCSSCTTSCCCHHHHTTCCBSTHHHHHHHHHHHHHHHHSSCCCEEEETTE------
T ss_pred cCCEEEeeCchhhhhhccCCCceeeeecCCCCCCChHHhcCCCCCccccHHHHHHHHHHHHhCCCccccCCCCc------
Confidence 56788999999987765555567777889999999999999999999999999999999999999985322111
Q ss_pred HHHHHhhcCCcccccCCcccc-cCHHHHHHHHHHHHHccCCCCCCC-CCHHHHHHHHhcCc
Q 038019 730 WAWNLHENNQSFGLVDPTLTE-FNDKEALRVIGVALLCTQTSPMMR-PPMSRVVAMLAGDI 788 (866)
Q Consensus 730 ~~~~~~~~~~~~~~~d~~l~~-~~~~~~~~~~~la~~C~~~~p~~R-Psm~~V~~~L~~~~ 788 (866)
..++..+.. ...+...+++ ..|++.+|.+| |+++++.+.|+...
T Consensus 293 ------------~~~~~~~~~~~~~~~~~~~~---~~~l~~~p~~r~~~~~~l~~~l~~~l 338 (365)
T 3e7e_A 293 ------------CKPEGLFRRLPHLDMWNEFF---HVMLNIPDCHHLPSLDLLRQKLKKVF 338 (365)
T ss_dssp ------------EEECSCCTTCSSHHHHHHHH---HHHHCCCCTTCCCCHHHHHHHHHHHH
T ss_pred ------------eeechhccccCcHHHHHHHH---HHHcCCCCCCcchHHHHHHHHHHHHH
Confidence 001111111 1234444444 47889999888 67888888887544
|
| >3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.31 E-value=5.4e-13 Score=144.79 Aligned_cols=137 Identities=13% Similarity=0.132 Sum_probs=83.1
Q ss_pred CCCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeec-CCCCchhHHHHHHHHHHHHHhcCCCCCCC
Q 038019 641 SKPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMR-GHLTEKADVFSFGVVALEIISGRASSDKS 719 (866)
Q Consensus 641 ~~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~-~~~t~ksDVySfGvvLlEl~tg~~p~~~~ 719 (866)
...|++...+...++.|||.+...+... ..+....||.+|+|||.+.+ ..++.++|||||||+++||+||+.|+...
T Consensus 127 kp~NIl~~~~~~~kl~Dfg~a~~~~~~~--~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~ 204 (324)
T 3mtl_A 127 KPQNLLINERGELKLADFGLARAKSIPT--KTYDNEVVTLWYRPPDILLGSTDYSTQIDMWGVGCIFYEMATGRPLFPGS 204 (324)
T ss_dssp CGGGEEECTTCCEEECSSSEEECC--------------CGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCCCS
T ss_pred CHHHEEECCCCCEEEccCcccccccCCc--cccccccCcccccChhhhcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCC
Confidence 3346666666677899999988765432 33445578999999998876 57899999999999999999999999865
Q ss_pred chhhhhcHHHHHHHHhhc---CCcccccC---------Cccc-----ccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 720 LDMEKIYLLEWAWNLHEN---NQSFGLVD---------PTLT-----EFNDKEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 720 ~~~~~~~l~~~~~~~~~~---~~~~~~~d---------~~l~-----~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
...+ ....+...... ....+..+ +... .........+.++...|++.||++|||+.||++
T Consensus 205 ~~~~---~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~ 281 (324)
T 3mtl_A 205 TVEE---QLHFIFRILGTPTEETWPGILSNEEFKTYNYPKYRAEALLSHAPRLDSDGADLLTKLLQFEGRNRISAEDAMK 281 (324)
T ss_dssp SHHH---HHHHHHHHHCCCCTTTSTTGGGCHHHHHTCCCCCCCCCHHHHCTTSCHHHHHHHHHHSCSSGGGSCCHHHHTT
T ss_pred CHHH---HHHHHHHHhCCCChHhchhhhcchhhcccccccccchhhhhhcCCCCHHHHHHHHHHcCcCcccCCCHHHHhc
Confidence 4333 22222222111 00101000 0000 000011134556777999999999999999975
|
| >3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=4.4e-13 Score=144.57 Aligned_cols=132 Identities=20% Similarity=0.270 Sum_probs=79.6
Q ss_pred CCcccCHHHHHHHhcCCccccccCCCCce-eEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCCc
Q 038019 642 KPNIFGYAELRSATKDFNRSNKLGEGGYG-PVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSL 720 (866)
Q Consensus 642 ~~~~~~~~~~~~~~~dF~~~~~lg~g~~g-~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~ 720 (866)
..|++...+...++.|||.+..++..+.. .......||.+|+|||.+.+..++.++|||||||+++||+||+.|+....
T Consensus 144 p~Nil~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~g~~pf~~~~ 223 (311)
T 3ork_A 144 PANIMISATNAVKVMDFGIARAIADSGNSVTQTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGDS 223 (311)
T ss_dssp GGGEEEETTSCEEECCCSCC------------------CCTTCCHHHHHTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSS
T ss_pred HHHEEEcCCCCEEEeeccCcccccccccccccccccCcCcccCCHHHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCCC
Confidence 34677666667889999999888754432 12234568999999999999999999999999999999999999997644
Q ss_pred hhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHH-HHHh
Q 038019 721 DMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVV-AMLA 785 (866)
Q Consensus 721 ~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~-~~L~ 785 (866)
..+ .......... ..+.. ........+.++...|++.||++||++.+++ ..+.
T Consensus 224 ~~~------~~~~~~~~~~----~~~~~--~~~~~~~~l~~li~~~l~~dP~~R~~~~~~l~~~l~ 277 (311)
T 3ork_A 224 PVS------VAYQHVREDP----IPPSA--RHEGLSADLDAVVLKALAKNPENRYQTAAEMRADLV 277 (311)
T ss_dssp HHH------HHHHHHHCCC----CCHHH--HSTTCCHHHHHHHHHHTCSSGGGSCSSHHHHHHHHH
T ss_pred hHH------HHHHHhcCCC----CCccc--ccCCCCHHHHHHHHHHHhcCHhhChhhHHHHHHHHH
Confidence 322 1122222111 00000 0001122355666799999999999766654 4444
|
| >2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.31 E-value=1.2e-12 Score=140.28 Aligned_cols=125 Identities=14% Similarity=0.149 Sum_probs=85.8
Q ss_pred CCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCC---CCchhHHHHHHHHHHHHHhcCCCCCC
Q 038019 642 KPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGH---LTEKADVFSFGVVALEIISGRASSDK 718 (866)
Q Consensus 642 ~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~---~t~ksDVySfGvvLlEl~tg~~p~~~ 718 (866)
..|++...+...++.|||.++.+.... .......||..|+|||.+.... .+.++|||||||+++||++|+.|+..
T Consensus 165 p~Nil~~~~~~~kl~Dfg~~~~~~~~~--~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~ 242 (298)
T 2zv2_A 165 PSNLLVGEDGHIKIADFGVSNEFKGSD--ALLSNTVGTPAFMAPESLSETRKIFSGKALDVWAMGVTLYCFVFGQCPFMD 242 (298)
T ss_dssp GGGEEECTTSCEEECCCTTCEECSSSS--CEECCCCSCGGGCCGGGCCTTCCCEESHHHHHHHHHHHHHHHHHSSCSSCC
T ss_pred HHHEEECCCCCEEEecCCCcccccccc--ccccCCcCCccccChhhhccCCCCCCCchhhhHhHHHHHHHHHHCCCCCCC
Confidence 346776666678899999998876542 2344567999999999987655 47899999999999999999999875
Q ss_pred CchhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 719 SLDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 719 ~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
.... .+.... ..+.. . .|.....+ ..+.++..+|++.||++||++.||++
T Consensus 243 ~~~~------~~~~~~-~~~~~-~--~~~~~~~~----~~l~~li~~~l~~dp~~R~s~~e~l~ 292 (298)
T 2zv2_A 243 ERIM------CLHSKI-KSQAL-E--FPDQPDIA----EDLKDLITRMLDKNPESRIVVPEIKL 292 (298)
T ss_dssp SSHH------HHHHHH-HHCCC-C--CCSSSCCC----HHHHHHHHHHTCSCTTTSCCHHHHTT
T ss_pred ccHH------HHHHHH-hcccC-C--CCCccccC----HHHHHHHHHHhhcChhhCCCHHHHhc
Confidence 3321 111111 11111 0 01111122 23455667999999999999999864
|
| >3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7} | Back alignment and structure |
|---|
Probab=99.31 E-value=1.7e-13 Score=151.08 Aligned_cols=67 Identities=21% Similarity=0.199 Sum_probs=56.0
Q ss_pred HHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCCch
Q 038019 650 ELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSLD 721 (866)
Q Consensus 650 ~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~ 721 (866)
+...++.|||.+...+... ....||..|+|||.+.+..++.++|||||||+++||+||+.|+.....
T Consensus 198 ~~~~kl~DFG~a~~~~~~~-----~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~ 264 (360)
T 3llt_A 198 STGIKLIDFGCATFKSDYH-----GSIINTRQYRAPEVILNLGWDVSSDMWSFGCVLAELYTGSLLFRTHEH 264 (360)
T ss_dssp CCCEEECCCTTCEETTSCC-----CSCCSCGGGCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSCCCSSH
T ss_pred CCCEEEEeccCceecCCCC-----cCccCcccccCcHHHcCCCCCCccchHHHHHHHHHHHHCCCCCCCCcH
Confidence 4456789999998765432 234689999999999999999999999999999999999999986543
|
| >1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A | Back alignment and structure |
|---|
Probab=99.31 E-value=5.8e-13 Score=141.90 Aligned_cols=136 Identities=17% Similarity=0.191 Sum_probs=84.2
Q ss_pred CCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeec-CCCCchhHHHHHHHHHHHHHhcCCCCCCCc
Q 038019 642 KPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMR-GHLTEKADVFSFGVVALEIISGRASSDKSL 720 (866)
Q Consensus 642 ~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~-~~~t~ksDVySfGvvLlEl~tg~~p~~~~~ 720 (866)
..|++...+...++.|||.++.++... ..+....||..|+|||.+.+ ..++.++|||||||+++||+||+.|+....
T Consensus 128 p~Nil~~~~~~~kl~Dfg~~~~~~~~~--~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~ 205 (288)
T 1ob3_A 128 PQNLLINREGELKIADFGLARAFGIPV--RKYTHEIVTLWYRAPDVLMGSKKYSTTIDIWSVGCIFAEMVNGTPLFPGVS 205 (288)
T ss_dssp GGGEEECTTSCEEECCTTHHHHHCC-----------CCCTTCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSS
T ss_pred HHHEEEcCCCCEEEeECccccccCccc--cccccccccccccCchheeCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCC
Confidence 346776667778899999998776432 23345578999999999875 468999999999999999999999997644
Q ss_pred hhhhhcHHHHHHHHhhcC---Cc-----ccccCCccc--------ccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 721 DMEKIYLLEWAWNLHENN---QS-----FGLVDPTLT--------EFNDKEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 721 ~~~~~~l~~~~~~~~~~~---~~-----~~~~d~~l~--------~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
..+. ...+....... .. ....++... .........+.++...|++.||++|||+.|+++
T Consensus 206 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~ 280 (288)
T 1ob3_A 206 EADQ---LMRIFRILGTPNSKNWPNVTELPKYDPNFTVYEPLPWESFLKGLDESGIDLLSKMLKLDPNQRITAKQALE 280 (288)
T ss_dssp HHHH---HHHHHHHHCCCCTTTSTTGGGSTTCCTTCCCCCCCCGGGTCCSCCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred HHHH---HHHHHHHHCCCChhhchhhhcccccccccccccCccHHHHhhhcCHHHHHHHHHHcCCCcccCCCHHHHhc
Confidence 3221 11122211100 00 001111110 000111234456777999999999999999874
|
| >1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B* | Back alignment and structure |
|---|
Probab=99.31 E-value=4.5e-13 Score=142.80 Aligned_cols=132 Identities=16% Similarity=0.224 Sum_probs=90.2
Q ss_pred CCcccCHHHHHHHhcCCccccccCCCCcee-EEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHh-cCCCCCCC
Q 038019 642 KPNIFGYAELRSATKDFNRSNKLGEGGYGP-VYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIIS-GRASSDKS 719 (866)
Q Consensus 642 ~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~-vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~t-g~~p~~~~ 719 (866)
..|++...+...++.|||.++.+....... ......+|.+|+|||......++.++||||||++++||+| |+.|+...
T Consensus 149 p~Nili~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~ 228 (291)
T 1u46_A 149 ARNLLLATRDLVKIGDFGLMRALPQNDDHYVMQEHRKVPFAWCAPESLKTRTFSHASDTWMFGVTLWEMFTYGQEPWIGL 228 (291)
T ss_dssp GGGEEEEETTEEEECCCTTCEECCC-CCEEEC-----CCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTSCCTTTTC
T ss_pred hheEEEcCCCCEEEccccccccccccccchhhhccCCCCceeeCchhhcCCCCCchhhHHHHHHHHHHHHhCCCCCcccC
Confidence 346776666678899999998886544322 2234467889999999998889999999999999999999 99998754
Q ss_pred chhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhcC
Q 038019 720 LDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLAGD 787 (866)
Q Consensus 720 ~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~~~ 787 (866)
...+ +. ......+.. .+..... ...+.+++..|++.+|++||++.+|++.|+..
T Consensus 229 ~~~~---~~---~~~~~~~~~----~~~~~~~----~~~l~~li~~~l~~~p~~Rps~~~l~~~l~~~ 282 (291)
T 1u46_A 229 NGSQ---IL---HKIDKEGER----LPRPEDC----PQDIYNVMVQCWAHKPEDRPTFVALRDFLLEA 282 (291)
T ss_dssp CHHH---HH---HHHHTSCCC----CCCCTTC----CHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred CHHH---HH---HHHHccCCC----CCCCcCc----CHHHHHHHHHHccCCcccCcCHHHHHHHHHHh
Confidence 3321 12 111111110 0111112 23455667799999999999999999999854
|
| >2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=1.1e-12 Score=145.92 Aligned_cols=74 Identities=22% Similarity=0.209 Sum_probs=60.1
Q ss_pred CcccC--HHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCCc
Q 038019 643 PNIFG--YAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSL 720 (866)
Q Consensus 643 ~~~~~--~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~ 720 (866)
.|++. ..+...++.|||.+..++... ....||..|+|||++.+..++.++|||||||+++||+||+.|+....
T Consensus 188 ~NIll~~~~~~~~kL~DFG~a~~~~~~~-----~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~pf~~~~ 262 (382)
T 2vx3_A 188 ENILLCNPKRSAIKIVDFGSSCQLGQRI-----YQYIQSRFYRSPEVLLGMPYDLAIDMWSLGCILVEMHTGEPLFSGAN 262 (382)
T ss_dssp GGEEESSTTSCCEEECCCTTCEETTCCC-----CSSCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCCSS
T ss_pred ccEEEecCCCCcEEEEeccCceeccccc-----ccccCCccccChHHHcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCC
Confidence 35555 234456899999998886542 23468999999999999999999999999999999999999998654
Q ss_pred h
Q 038019 721 D 721 (866)
Q Consensus 721 ~ 721 (866)
.
T Consensus 263 ~ 263 (382)
T 2vx3_A 263 E 263 (382)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=1.4e-12 Score=140.56 Aligned_cols=132 Identities=15% Similarity=0.151 Sum_probs=79.7
Q ss_pred CcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCCchh
Q 038019 643 PNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSLDM 722 (866)
Q Consensus 643 ~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~~ 722 (866)
.|++...+...++.|||.+..+.... .......||..|+|||.+....++.++||||||++++||+||+.|+.....
T Consensus 165 ~NIl~~~~~~~kl~Dfg~~~~~~~~~--~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~- 241 (310)
T 2wqm_A 165 ANVFITATGVVKLGDLGLGRFFSSKT--TAAHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGDKM- 241 (310)
T ss_dssp GGEEECTTSCEEECCC--------------------CCSSCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTC---C-
T ss_pred HHEEEcCCCCEEEEeccceeeecCCC--ccccccCCCeeEeChHHhCCCCCCchhhHHHHHHHHHHHHhCCCCCcccch-
Confidence 36666666677889999988776432 222345689999999999999999999999999999999999999864321
Q ss_pred hhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhcCc
Q 038019 723 EKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLAGDI 788 (866)
Q Consensus 723 ~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~~~~ 788 (866)
....+... ...+... +.......+ .+.+++..|++.||++||++.+|++.|+...
T Consensus 242 ---~~~~~~~~-~~~~~~~----~~~~~~~~~---~l~~li~~~l~~dp~~Rps~~~il~~l~~l~ 296 (310)
T 2wqm_A 242 ---NLYSLCKK-IEQCDYP----PLPSDHYSE---ELRQLVNMCINPDPEKRPDVTYVYDVAKRMH 296 (310)
T ss_dssp ---CHHHHHHH-HHTTCSC----CCCTTTSCH---HHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred ---hHHHHHHH-hhcccCC----CCcccccCH---HHHHHHHHHcCCChhhCCCHHHHHHHHHHHH
Confidence 12222221 1111111 111111122 3455666999999999999999999998643
|
| >3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 4deg_A* 4deh_A* 4dei_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 4aoi_A* 4ap7_A* 3q6w_A* ... | Back alignment and structure |
|---|
Probab=99.31 E-value=6.2e-13 Score=142.38 Aligned_cols=133 Identities=19% Similarity=0.254 Sum_probs=90.0
Q ss_pred CCcccCHHHHHHHhcCCccccccCCCCcee--EEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhc-CCCCCC
Q 038019 642 KPNIFGYAELRSATKDFNRSNKLGEGGYGP--VYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISG-RASSDK 718 (866)
Q Consensus 642 ~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~--vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg-~~p~~~ 718 (866)
..|++...+...++.|||.+..+....... ...+..||.+|+|||...+..++.++||||||++++||+|| +.|+..
T Consensus 156 p~Nil~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~~~~~~~~ 235 (298)
T 3f66_A 156 ARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPD 235 (298)
T ss_dssp GGGEEECTTCCEEECSCGGGCCCSCGGGCBC-----CCBCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTT
T ss_pred hheEEECCCCCEEECcccccccccccchhccccccCCCCCccccChHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCCcc
Confidence 346776666678899999998886554322 23345678899999999999999999999999999999995 455543
Q ss_pred CchhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhcCcC
Q 038019 719 SLDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLAGDIE 789 (866)
Q Consensus 719 ~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~~~~~ 789 (866)
.... ........ +.. ... ..... ..+.++...|++.+|++||++.||+++|+....
T Consensus 236 ~~~~---~~~~~~~~----~~~--~~~---~~~~~---~~l~~li~~~l~~~p~~Rps~~ell~~L~~~~~ 291 (298)
T 3f66_A 236 VNTF---DITVYLLQ----GRR--LLQ---PEYCP---DPLYEVMLKCWHPKAEMRPSFSELVSRISAIFS 291 (298)
T ss_dssp SCTT---THHHHHHT----TCC--CCC---CTTCC---HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred CCHH---HHHHHHhc----CCC--CCC---CccCC---HHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHH
Confidence 3221 22222111 110 111 11112 235566779999999999999999999986543
|
| >3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=4.4e-13 Score=144.70 Aligned_cols=125 Identities=17% Similarity=0.298 Sum_probs=77.2
Q ss_pred cccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeec-----------CCCCchhHHHHHHHHHHHHHhc
Q 038019 644 NIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMR-----------GHLTEKADVFSFGVVALEIISG 712 (866)
Q Consensus 644 ~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~-----------~~~t~ksDVySfGvvLlEl~tg 712 (866)
|++. .+...++.|||.+..+.............||..|+|||.+.. ..++.++|||||||+++||+||
T Consensus 157 NIl~-~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~Di~slG~il~el~~g 235 (313)
T 3cek_A 157 NFLI-VDGMLKLIDFGIANQMQPDTTSVVKDSQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYG 235 (313)
T ss_dssp GEEE-ETTEEEECCCSSSCC--------------CCGGGCCHHHHTTCC----------CCCHHHHHHHHHHHHHHHHHS
T ss_pred cEEE-ECCeEEEeeccccccccCccccccccCCCCCCCcCCHHHHhhcccccccccccccCCchHHHHHHHHHHHHHHhC
Confidence 5554 345678999999998876544334445679999999999865 5789999999999999999999
Q ss_pred CCCCCCCchhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 713 RASSDKSLDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 713 ~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
+.|+...... ............ .........+ .+.++...|++.||++||++.||++
T Consensus 236 ~~pf~~~~~~-----~~~~~~~~~~~~-----~~~~~~~~~~---~l~~li~~~l~~dp~~Rps~~ell~ 292 (313)
T 3cek_A 236 KTPFQQIINQ-----ISKLHAIIDPNH-----EIEFPDIPEK---DLQDVLKCCLKRDPKQRISIPELLA 292 (313)
T ss_dssp SCTTTTCCSH-----HHHHHHHHCTTS-----CCCCCCCSCH---HHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred CCchhhHHHH-----HHHHHHHHhccc-----ccCCcccchH---HHHHHHHHHccCCcccCcCHHHHhc
Confidence 9998754321 111112111111 1111111222 3455666999999999999999985
|
| >3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* 4azf_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=8.1e-13 Score=149.18 Aligned_cols=74 Identities=23% Similarity=0.229 Sum_probs=60.3
Q ss_pred CcccCHHHHH--HHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCCc
Q 038019 643 PNIFGYAELR--SATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSL 720 (866)
Q Consensus 643 ~~~~~~~~~~--~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~ 720 (866)
.|++...+.. .++.|||.+...+.... ...||..|+|||++.+..++.++|||||||+++||+||+.|+....
T Consensus 229 ~NILl~~~~~~~vkL~DFG~a~~~~~~~~-----~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~elltG~~pf~~~~ 303 (429)
T 3kvw_A 229 ENILLKQQGRSGIKVIDFGSSCYEHQRVY-----TYIQSRFYRAPEVILGARYGMPIDMWSLGCILAELLTGYPLLPGED 303 (429)
T ss_dssp GGEEESSTTSCCEEECCCTTCEETTCCCC-----SSCSCGGGCCHHHHHTBCCCTHHHHHHHHHHHHHHHHSSCSSCCSS
T ss_pred HHeEEccCCCcceEEeecccceecCCccc-----ccCCCCCccChHHHhCCCCCchHHHHhHHHHHHHHHhCCCCCCCCC
Confidence 3666655544 68899999987765432 2468999999999999999999999999999999999999997654
Q ss_pred h
Q 038019 721 D 721 (866)
Q Consensus 721 ~ 721 (866)
.
T Consensus 304 ~ 304 (429)
T 3kvw_A 304 E 304 (429)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=8.9e-13 Score=144.54 Aligned_cols=122 Identities=19% Similarity=0.266 Sum_probs=86.1
Q ss_pred CCCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeee---cCCCCchhHHHHHHHHHHHHHhcCCCCC
Q 038019 641 SKPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAM---RGHLTEKADVFSFGVVALEIISGRASSD 717 (866)
Q Consensus 641 ~~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~---~~~~t~ksDVySfGvvLlEl~tg~~p~~ 717 (866)
...|++...+...++.|||.+..+.... ...||++|+|||.+. .+.++.++|||||||+++||+||+.|+.
T Consensus 181 kp~NIll~~~~~~kL~DfG~a~~~~~~~------~~~gt~~y~aPE~~~~~~~~~~~~~~DiwslG~il~ell~g~~p~~ 254 (348)
T 1u5q_A 181 KAGNILLSEPGLVKLGDFGSASIMAPAN------SFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLF 254 (348)
T ss_dssp SGGGEEEETTTEEEECCCTTCBSSSSBC------CCCSCGGGCCHHHHHTTSSCCBCTHHHHHHHHHHHHHHHHSSCTTT
T ss_pred CHHHEEECCCCCEEEeeccCceecCCCC------cccCCcceeCHhhhccccCCCCCcHHHHHHHHHHHHHHHhCCCCCC
Confidence 3347777777778899999998876432 246899999999884 5789999999999999999999999987
Q ss_pred CCchhhhhcHHHHHHHHhhcCCcccccCCcc-cccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 038019 718 KSLDMEKIYLLEWAWNLHENNQSFGLVDPTL-TEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAM 783 (866)
Q Consensus 718 ~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l-~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~ 783 (866)
...... ......... .+.+ .....++ +.++...|++.+|++|||+.++++.
T Consensus 255 ~~~~~~------~~~~~~~~~------~~~~~~~~~~~~---l~~li~~~l~~dP~~Rps~~~ll~h 306 (348)
T 1u5q_A 255 NMNAMS------ALYHIAQNE------SPALQSGHWSEY---FRNFVDSCLQKIPQDRPTSEVLLKH 306 (348)
T ss_dssp TSCHHH------HHHHHHHSC------CCCCCCTTSCHH---HHHHHHHHTCSSGGGSCCHHHHTTC
T ss_pred CCChHH------HHHHHHhcC------CCCCCCCCCCHH---HHHHHHHHcccChhhCcCHHHHhhC
Confidence 543221 122222211 1111 1111223 4456669999999999999999753
|
| >3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} SCOP: d.144.1.0 PDB: 3kmw_A* 3rep_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=9.4e-13 Score=138.60 Aligned_cols=124 Identities=16% Similarity=0.227 Sum_probs=80.9
Q ss_pred CcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCC---chhHHHHHHHHHHHHHhcCCCCCCC
Q 038019 643 PNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLT---EKADVFSFGVVALEIISGRASSDKS 719 (866)
Q Consensus 643 ~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t---~ksDVySfGvvLlEl~tg~~p~~~~ 719 (866)
.|++...+...++.+|+........ +..||+.|+|||.+.....+ .++||||||++++||+||+.|+...
T Consensus 142 ~Nil~~~~~~~~l~~~~~~~~~~~~-------~~~~t~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~ 214 (271)
T 3kmu_A 142 RSVMIDEDMTARISMADVKFSFQSP-------GRMYAPAWVAPEALQKKPEDTNRRSADMWSFAVLLWELVTREVPFADL 214 (271)
T ss_dssp GGEEECTTSCEEEEGGGSCCTTSCT-------TCBSCGGGSCHHHHHSCGGGSCHHHHHHHHHHHHHHHHHHCSCTTTTS
T ss_pred ceEEEcCCcceeEEeccceeeeccc-------CccCCccccChhhhccCCCCCCCchhhHHHHHHHHHHHHhCCCCcccc
Confidence 3566555544555555554443322 23589999999998765444 4899999999999999999999754
Q ss_pred chhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhcC
Q 038019 720 LDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLAGD 787 (866)
Q Consensus 720 ~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~~~ 787 (866)
...+ ........+ ..+.+..... ..+.++...|++.||++|||+.||++.|+..
T Consensus 215 ~~~~------~~~~~~~~~-----~~~~~~~~~~---~~~~~li~~~l~~~p~~Rps~~~il~~L~~l 268 (271)
T 3kmu_A 215 SNME------IGMKVALEG-----LRPTIPPGIS---PHVSKLMKICMNEDPAKRPKFDMIVPILEKM 268 (271)
T ss_dssp CHHH------HHHHHHHSC-----CCCCCCTTCC---HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred ChHH------HHHHHHhcC-----CCCCCCCCCC---HHHHHHHHHHcCCChhhCcCHHHHHHHHHHh
Confidence 3322 111111111 1122221122 2355566699999999999999999999853
|
| >3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=5.9e-13 Score=139.94 Aligned_cols=130 Identities=22% Similarity=0.251 Sum_probs=90.2
Q ss_pred CCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHh-cCCCCCCCc
Q 038019 642 KPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIIS-GRASSDKSL 720 (866)
Q Consensus 642 ~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~t-g~~p~~~~~ 720 (866)
..|++...+...++.|||.+..+..... ....+..+|..|+|||......++.++||||||++++||+| |+.|+....
T Consensus 132 p~Nili~~~~~~kl~dfg~~~~~~~~~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~ 210 (267)
T 3t9t_A 132 ARNCLVGENQVIKVSDFGMTRFVLDDQY-TSSTGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRS 210 (267)
T ss_dssp GGGEEECGGGCEEECCTTGGGGBCCHHH-HSTTSTTCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCC
T ss_pred hheEEECCCCCEEEcccccccccccccc-cccccccccccccChhhhcCCCccchhchhhhHHHHHHHhccCCCCCCCCC
Confidence 3467776777788999999887754321 11223456788999999998999999999999999999999 899987543
Q ss_pred hhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhcC
Q 038019 721 DMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLAGD 787 (866)
Q Consensus 721 ~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~~~ 787 (866)
..+ ....+ ..+. .+....... ..+.+++..|++.+|++||++.|+++.|+..
T Consensus 211 ~~~---~~~~i----~~~~-----~~~~~~~~~---~~l~~li~~~l~~~p~~Rps~~~ll~~L~~l 262 (267)
T 3t9t_A 211 NSE---VVEDI----STGF-----RLYKPRLAS---THVYQIMNHCWRERPEDRPAFSRLLRQLAEI 262 (267)
T ss_dssp HHH---HHHHH----HTTC-----CCCCCTTSC---HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred HHH---HHHHH----hcCC-----cCCCCccCc---HHHHHHHHHHccCChhhCcCHHHHHHHHHHH
Confidence 221 12111 1111 011111112 2345566799999999999999999999854
|
| >1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=1.3e-12 Score=138.32 Aligned_cols=124 Identities=20% Similarity=0.239 Sum_probs=82.3
Q ss_pred CcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHh-cCCCCCCCch
Q 038019 643 PNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIIS-GRASSDKSLD 721 (866)
Q Consensus 643 ~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~t-g~~p~~~~~~ 721 (866)
.|++...+...++.|||.+...+... ....++.+|+|||......++.++||||||++++||+| |+.|+.....
T Consensus 146 ~Nil~~~~~~~~l~Dfg~~~~~~~~~-----~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~t~g~~p~~~~~~ 220 (278)
T 1byg_A 146 RNVLVSEDNVAKVSDFGLTKEASSTQ-----DTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPL 220 (278)
T ss_dssp GGEEECTTSCEEECCCCC-----------------CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCTTSCG
T ss_pred ceEEEeCCCcEEEeeccccccccccc-----cCCCccccccCHHHhCCCCCCchhcHHHHHHHHHHHHhCCCCCCCCCCH
Confidence 36666666677889999888665432 22357889999999999999999999999999999998 9999875432
Q ss_pred hhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhc
Q 038019 722 MEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLAG 786 (866)
Q Consensus 722 ~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~~ 786 (866)
.+ +... ...+. .+....... ..+.++...|++.+|++||++.|+++.|+.
T Consensus 221 ~~---~~~~----~~~~~-----~~~~~~~~~---~~l~~li~~~l~~~p~~Rps~~~l~~~L~~ 270 (278)
T 1byg_A 221 KD---VVPR----VEKGY-----KMDAPDGCP---PAVYEVMKNCWHLDAAMRPSFLQLREQLEH 270 (278)
T ss_dssp GG---HHHH----HTTTC-----CCCCCTTCC---HHHHHHHHHHTCSSGGGSCCHHHHHHHHHH
T ss_pred HH---HHHH----HhcCC-----CCCCcccCC---HHHHHHHHHHhcCChhhCCCHHHHHHHHHH
Confidence 22 2211 11111 111111112 235556669999999999999999999985
|
| >2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.30 E-value=4.3e-13 Score=145.70 Aligned_cols=116 Identities=18% Similarity=0.166 Sum_probs=80.5
Q ss_pred HHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCCchhhhhcHHHHH
Q 038019 652 RSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSLDMEKIYLLEWA 731 (866)
Q Consensus 652 ~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~~~~~~l~~~~ 731 (866)
..++.|||.++.+..+.. .....||+.|+|||.+....++.++|||||||+++||+||+.|+......+ ....+
T Consensus 156 ~~kl~Dfg~a~~~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~---~~~~~ 229 (326)
T 2y0a_A 156 RIKIIDFGLAHKIDFGNE---FKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQE---TLANV 229 (326)
T ss_dssp CEEECCCTTCEECCTTSC---CCCCCSCTTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCSSHHH---HHHHH
T ss_pred CEEEEECCCCeECCCCCc---cccccCCcCcCCceeecCCCCCcHHHHHHHHHHHHHHHHCcCCCCCCCHHH---HHHHH
Confidence 467899999988865432 334579999999999998999999999999999999999999997543222 11111
Q ss_pred HHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 732 WNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 732 ~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
.. ... . ..+...... ...+.++...|++.||++|||+.|+++
T Consensus 230 ~~----~~~-~-~~~~~~~~~---~~~~~~li~~~L~~dP~~Rpt~~e~l~ 271 (326)
T 2y0a_A 230 SA----VNY-E-FEDEYFSNT---SALAKDFIRRLLVKDPKKRMTIQDSLQ 271 (326)
T ss_dssp HH----TCC-C-CCHHHHTTS---CHHHHHHHHHHSCSSGGGSCCHHHHHH
T ss_pred Hh----cCC-C-cCccccccC---CHHHHHHHHHHccCChhhCCCHHHHhc
Confidence 11 100 0 000000011 123455667999999999999999986
|
| >3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=5.5e-13 Score=144.96 Aligned_cols=124 Identities=17% Similarity=0.174 Sum_probs=80.6
Q ss_pred cccCHH---HHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCCc
Q 038019 644 NIFGYA---ELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSL 720 (866)
Q Consensus 644 ~~~~~~---~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~ 720 (866)
|++... +...++.|||.++.++... ......||++|+|||.+....++.++|||||||+++||+||+.|+....
T Consensus 161 NIl~~~~~~~~~~kL~Dfg~a~~~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~ 237 (327)
T 3lm5_A 161 NILLSSIYPLGDIKIVDFGMSRKIGHAC---ELREIMGTPEYLAPEILNYDPITTATDMWNIGIIAYMLLTHTSPFVGED 237 (327)
T ss_dssp GEEESCBTTBCCEEECCGGGCEEC------------CCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCCSS
T ss_pred HEEEecCCCCCcEEEeeCccccccCCcc---ccccccCCcCccCCeeecCCCCCchhhHHHHHHHHHHHHhCCCCCCCCC
Confidence 555433 3456889999998886543 2344579999999999999999999999999999999999999997644
Q ss_pred hhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 721 DMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 721 ~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
..+. ...+.. ... ....+..... ...+.+++..|++.||++|||+.|+++
T Consensus 238 ~~~~---~~~i~~----~~~-~~~~~~~~~~----~~~~~~li~~~L~~dP~~Rpt~~~ll~ 287 (327)
T 3lm5_A 238 NQET---YLNISQ----VNV-DYSEETFSSV----SQLATDFIQSLLVKNPEKRPTAEICLS 287 (327)
T ss_dssp HHHH---HHHHHH----TCC-CCCTTTTTTS----CHHHHHHHHHHSCSSGGGSCCHHHHTT
T ss_pred chHH---HHHHHh----ccc-ccCchhhccc----CHHHHHHHHHHcCCChhhCcCHHHHhC
Confidence 3221 111111 000 0111111112 223455667999999999999999864
|
| >3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.30 E-value=1e-12 Score=148.71 Aligned_cols=126 Identities=13% Similarity=0.151 Sum_probs=86.5
Q ss_pred CcccCH---HHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCC
Q 038019 643 PNIFGY---AELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKS 719 (866)
Q Consensus 643 ~~~~~~---~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~ 719 (866)
.|++.. .+...++.|||.+..+.... ....+..||++|+|||.+....++.++||||+||+++||++|+.|+...
T Consensus 139 ~NIll~~~~~~~~vkL~DFG~a~~~~~~~--~~~~~~~gt~~Y~APE~l~~~~~~~~~DIwSlGvilyell~G~~Pf~~~ 216 (444)
T 3soa_A 139 ENLLLASKLKGAAVKLADFGLAIEVEGEQ--QAWFGFAGTPGYLSPEVLRKDPYGKPVDLWACGVILYILLVGYPPFWDE 216 (444)
T ss_dssp TTEEESBSSTTCCEEECCCSSCBCCCTTC--CBCCCSCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSCCCS
T ss_pred HHEEEeccCCCCcEEEccCceeEEecCCC--ceeecccCCcccCCHHHhcCCCCCCccccHHHHHHHHHHHhCCCCCCCc
Confidence 355554 23456789999998876543 2334567999999999999889999999999999999999999999754
Q ss_pred chhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 720 LDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 720 ~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
...+ +.. ....+.. ....+.....+ + .+.++...|++.||++|||+.|+++
T Consensus 217 ~~~~---~~~----~i~~~~~-~~~~~~~~~~s-~---~~~~li~~~L~~dP~~Rpta~e~L~ 267 (444)
T 3soa_A 217 DQHR---LYQ----QIKAGAY-DFPSPEWDTVT-P---EAKDLINKMLTINPSKRITAAEALK 267 (444)
T ss_dssp SHHH---HHH----HHHHTCC-CCCTTTTTTSC-H---HHHHHHHHHSCSSTTTSCCHHHHHH
T ss_pred cHHH---HHH----HHHhCCC-CCCccccccCC-H---HHHHHHHHHcCCChhHCCCHHHHhc
Confidence 3221 221 1111211 11111111222 2 3445666999999999999999986
|
| >4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} PDB: 4bbm_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=5.1e-13 Score=145.49 Aligned_cols=139 Identities=22% Similarity=0.284 Sum_probs=83.7
Q ss_pred CCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecC-CCCchhHHHHHHHHHHHHHhcCCCCCCCc
Q 038019 642 KPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRG-HLTEKADVFSFGVVALEIISGRASSDKSL 720 (866)
Q Consensus 642 ~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~-~~t~ksDVySfGvvLlEl~tg~~p~~~~~ 720 (866)
..|++...+...++.|||.+..+...+ ..+....||.+|+|||.+.+. .++.++|||||||+++||+||+.|+....
T Consensus 152 p~Nil~~~~~~~kl~Dfg~~~~~~~~~--~~~~~~~~t~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~ 229 (331)
T 4aaa_A 152 PENILVSQSGVVKLCDFGFARTLAAPG--EVYDDEVATRWYRAPELLVGDVKYGKAVDVWAIGCLVTEMFMGEPLFPGDS 229 (331)
T ss_dssp GGGEEECTTSCEEECCCTTC--------------CCCCCTTCCHHHHTTCTTCCTHHHHHHHHHHHHHHHHSSCSCCCSS
T ss_pred hheEEEcCCCcEEEEeCCCceeecCCc--cccCCCcCCccccCcccccCCCCcchHHHHHHHHHHHHHHHhCCCCCCCCC
Confidence 346776666678899999998876543 345566799999999998765 78999999999999999999999997654
Q ss_pred hhhhhcHHHH--------HHHHhhcC-CcccccCCccc-cc-----CHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 721 DMEKIYLLEW--------AWNLHENN-QSFGLVDPTLT-EF-----NDKEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 721 ~~~~~~l~~~--------~~~~~~~~-~~~~~~d~~l~-~~-----~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
..+....... ....+... .......+.+. .. .......+.+++..|++.||++|||+.|+++
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt~~ell~ 306 (331)
T 4aaa_A 230 DIDQLYHIMMCLGNLIPRHQELFNKNPVFAGVRLPEIKEREPLERRYPKLSEVVIDLAKKCLHIDPDKRPFCAELLH 306 (331)
T ss_dssp HHHHHHHHHHHHCSCCHHHHHHHHHCGGGTTCCCCCCSSCCCHHHHSTTSCHHHHHHHHHHTCSSGGGSCCGGGGGG
T ss_pred cHHHHHHHHHHhCCCChhhhhHhhhccccccccCccccccchhhhcccchhHHHHHHHHHHhccCcccCCCHHHHhc
Confidence 3321111000 00111110 01111112111 00 1112345667778999999999999999875
|
| >2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=8.4e-13 Score=142.81 Aligned_cols=136 Identities=16% Similarity=0.191 Sum_probs=87.2
Q ss_pred CCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeec-CCCCchhHHHHHHHHHHHHHhcCCCCCCCc
Q 038019 642 KPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMR-GHLTEKADVFSFGVVALEIISGRASSDKSL 720 (866)
Q Consensus 642 ~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~-~~~t~ksDVySfGvvLlEl~tg~~p~~~~~ 720 (866)
..|++...+...++.|||.++.++... ..+....||..|+|||.+.+ ..++.++|||||||+++||+||+.|+....
T Consensus 136 p~NIl~~~~~~~kl~Dfg~~~~~~~~~--~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~ 213 (317)
T 2pmi_A 136 PQNLLINKRGQLKLGDFGLARAFGIPV--NTFSSEVVTLWYRAPDVLMGSRTYSTSIDIWSCGCILAEMITGKPLFPGTN 213 (317)
T ss_dssp GGGEEECTTCCEEECCCSSCEETTSCC--CCCCCCCSCCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCCCSS
T ss_pred hHHeEEcCCCCEEECcCccceecCCCc--ccCCCCcccccccCchHhhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCC
Confidence 346776666678899999998876432 12334578999999999875 468999999999999999999999997654
Q ss_pred hhhhhcHHHHHHHHhhc---CCcc-----cccCCccc----cc---------CHHHHHHHHHHHHHccCCCCCCCCCHHH
Q 038019 721 DMEKIYLLEWAWNLHEN---NQSF-----GLVDPTLT----EF---------NDKEALRVIGVALLCTQTSPMMRPPMSR 779 (866)
Q Consensus 721 ~~~~~~l~~~~~~~~~~---~~~~-----~~~d~~l~----~~---------~~~~~~~~~~la~~C~~~~p~~RPsm~~ 779 (866)
..+. ...+...... .... ...++.+. .. .......+.++...|++.||++|||+.|
T Consensus 214 ~~~~---~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt~~e 290 (317)
T 2pmi_A 214 DEEQ---LKLIFDIMGTPNESLWPSVTKLPKYNPNIQQRPPRDLRQVLQPHTKEPLDGNLMDFLHGLLQLNPDMRLSAKQ 290 (317)
T ss_dssp HHHH---HHHHHHHHCSCCTTTCGGGGGCTTCCTTCCCCCCCCSHHHHGGGCSSCCCHHHHHHHHHHSCSSGGGSCCHHH
T ss_pred hHHH---HHHHHHHhCCCChhHhhhhhhhhhcccccccccchhHHHhhcccccccCCHHHHHHHHHHCCCCcccCCCHHH
Confidence 3322 2222221110 0000 00001000 00 0001124566777999999999999998
Q ss_pred HHH
Q 038019 780 VVA 782 (866)
Q Consensus 780 V~~ 782 (866)
+++
T Consensus 291 ~l~ 293 (317)
T 2pmi_A 291 ALH 293 (317)
T ss_dssp HTT
T ss_pred HhC
Confidence 864
|
| >3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} | Back alignment and structure |
|---|
Probab=99.30 E-value=5.9e-13 Score=149.58 Aligned_cols=120 Identities=11% Similarity=-0.005 Sum_probs=84.8
Q ss_pred hccCCCCCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceee----------ecCCCCchhHHHHHHHH
Q 038019 636 LVGIGSKPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYA----------MRGHLTEKADVFSFGVV 705 (866)
Q Consensus 636 ~~~~~~~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~----------~~~~~t~ksDVySfGvv 705 (866)
++...+..|++...+...++.|||.++..+.. .....| .+|||||++ ....++.++|||||||+
T Consensus 233 iHrDiKp~NILl~~~~~~kL~DFG~a~~~~~~-----~~~~~g-~~y~aPE~~~~~~~~~~~~~~~~~~~~~DvwSlGvi 306 (413)
T 3dzo_A 233 VHTYLRPVDIVLDQRGGVFLTGFEHLVRDGAS-----AVSPIG-RGFAPPETTAERMLPFGQHHPTLMTFAFDTWTLGLA 306 (413)
T ss_dssp ECSCCCGGGEEECTTCCEEECCGGGCEETTEE-----ECCCCC-TTTCCHHHHHHHTSTTGGGCCEEECHHHHHHHHHHH
T ss_pred ccCCcccceEEEecCCeEEEEeccceeecCCc-----cccCCC-CceeCchhhhccccccccccCcCCCchhhHHHHHHH
Confidence 33333444777777777899999998877643 344567 999999998 56678999999999999
Q ss_pred HHHHHhcCCCCCCCchhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHH
Q 038019 706 ALEIISGRASSDKSLDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVV 781 (866)
Q Consensus 706 LlEl~tg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~ 781 (866)
+|||+||+.|+......+. ...++... ...+ ..+.+++..|++.||++||++.|++
T Consensus 307 l~elltg~~Pf~~~~~~~~---------------~~~~~~~~-~~~~----~~~~~li~~~l~~dP~~Rpt~~~~l 362 (413)
T 3dzo_A 307 IYWIWCADLPNTDDAALGG---------------SEWIFRSC-KNIP----QPVRALLEGFLRYPKEDRLLPLQAM 362 (413)
T ss_dssp HHHHHHSSCCCCTTGGGSC---------------SGGGGSSC-CCCC----HHHHHHHHHHTCSSGGGSCCHHHHT
T ss_pred HHHHHHCCCCCCCcchhhh---------------HHHHHhhc-ccCC----HHHHHHHHHHccCChhhCcCHHHHH
Confidence 9999999999975432211 00111100 1122 3355566699999999999987764
|
| >1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7 | Back alignment and structure |
|---|
Probab=99.30 E-value=4.6e-13 Score=145.17 Aligned_cols=123 Identities=15% Similarity=0.218 Sum_probs=86.1
Q ss_pred cccCHH--HHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCCch
Q 038019 644 NIFGYA--ELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSLD 721 (866)
Q Consensus 644 ~~~~~~--~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~ 721 (866)
|++... +...++.|||.+..+..+. .+....||+.|+|||.+....++.++|||||||+++||+||+.|+.....
T Consensus 132 NIl~~~~~~~~~kl~Dfg~a~~~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~ 208 (321)
T 1tki_A 132 NIIYQTRRSSTIKIIEFGQARQLKPGD---NFRLLFTAPEYYAPEVHQHDVVSTATDMWSLGTLVYVLLSGINPFLAETN 208 (321)
T ss_dssp GEEESSSSCCCEEECCCTTCEECCTTC---EEEEEESCGGGSCHHHHTTCEECHHHHHHHHHHHHHHHHHSSCTTCCSSH
T ss_pred HEEEccCCCCCEEEEECCCCeECCCCC---ccccccCChhhcCcHHhcCCCCCchhhHHHHHHHHHHHHhCCCCCcCCCH
Confidence 454433 4556789999999887653 34556799999999999888899999999999999999999999976433
Q ss_pred hhhhcHHHHHHHHhhcCCcccccCCcc-cccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 722 MEKIYLLEWAWNLHENNQSFGLVDPTL-TEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 722 ~~~~~l~~~~~~~~~~~~~~~~~d~~l-~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
.+ +.+.+. . +.. ..++.. ... ...+.++...|++.||++|||+.|+++
T Consensus 209 ~~---~~~~i~---~-~~~--~~~~~~~~~~----s~~~~~li~~~L~~dp~~Rpt~~e~l~ 257 (321)
T 1tki_A 209 QQ---IIENIM---N-AEY--TFDEEAFKEI----SIEAMDFVDRLLVKERKSRMTASEALQ 257 (321)
T ss_dssp HH---HHHHHH---H-TCC--CCCHHHHTTS----CHHHHHHHHTTSCSSGGGSCCHHHHHH
T ss_pred HH---HHHHHH---c-CCC--CCChhhhccC----CHHHHHHHHHHcCCChhHCcCHHHHhc
Confidence 22 221111 1 110 001000 111 123556677999999999999999986
|
| >3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major} | Back alignment and structure |
|---|
Probab=99.30 E-value=1.4e-12 Score=143.58 Aligned_cols=136 Identities=18% Similarity=0.164 Sum_probs=88.1
Q ss_pred CCcccCHH-HHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecC-CCCchhHHHHHHHHHHHHHhcCCCCCCC
Q 038019 642 KPNIFGYA-ELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRG-HLTEKADVFSFGVVALEIISGRASSDKS 719 (866)
Q Consensus 642 ~~~~~~~~-~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~-~~t~ksDVySfGvvLlEl~tg~~p~~~~ 719 (866)
..|++... +...++.|||.++.+..... .....||.+|+|||.+.+. .++.++|||||||+++||+||+.|+...
T Consensus 159 p~NIll~~~~~~~kl~Dfg~a~~~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~ell~g~~pf~~~ 235 (360)
T 3e3p_A 159 PHNVLVNEADGTLKLCDFGSAKKLSPSEP---NVAYICSRYYRAPELIFGNQHYTTAVDIWSVGCIFAEMMLGEPIFRGD 235 (360)
T ss_dssp GGGEEEETTTTEEEECCCTTCBCCCTTSC---CCSTTSCGGGCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred HHHEEEeCCCCcEEEeeCCCceecCCCCC---cccccCCcceeCHHHHcCCCCCCcHHHHHHHHHHHHHHHhCCCCcCCC
Confidence 34666654 66788999999998875542 2234689999999998654 4899999999999999999999999865
Q ss_pred chhhhhcHHHHHHH----------Hhh-cCCcccccCCc-c------cccCHHHHHHHHHHHHHccCCCCCCCCCHHHHH
Q 038019 720 LDMEKIYLLEWAWN----------LHE-NNQSFGLVDPT-L------TEFNDKEALRVIGVALLCTQTSPMMRPPMSRVV 781 (866)
Q Consensus 720 ~~~~~~~l~~~~~~----------~~~-~~~~~~~~d~~-l------~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~ 781 (866)
..... +...+.. ... ........+.. . ..........+.++...|++.||++|||+.||+
T Consensus 236 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l 313 (360)
T 3e3p_A 236 NSAGQ--LHEIVRVLGCPSREVLRKLNPSHTDVDLYNSKGIPWSNVFSDHSLKDAKEAYDLLSALLQYLPEERMKPYEAL 313 (360)
T ss_dssp SHHHH--HHHHHHHHCCCCHHHHHHHCTTCCCGGGGCCCCCCHHHHTTTCCCTTHHHHHHHHHHHTCSSGGGSCCHHHHT
T ss_pred ChHHH--HHHHHHHcCCCCHHHHHhcccchhhccccccccCCcccccchhhccccHHHHHHHHHHhccCccccCCHHHHh
Confidence 43322 1111111 000 00000000000 0 011111234566777899999999999999997
Q ss_pred H
Q 038019 782 A 782 (866)
Q Consensus 782 ~ 782 (866)
+
T Consensus 314 ~ 314 (360)
T 3e3p_A 314 C 314 (360)
T ss_dssp T
T ss_pred c
Confidence 5
|
| >2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.29 E-value=7.2e-13 Score=145.40 Aligned_cols=125 Identities=16% Similarity=0.194 Sum_probs=75.7
Q ss_pred cccCHH---HHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCCc
Q 038019 644 NIFGYA---ELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSL 720 (866)
Q Consensus 644 ~~~~~~---~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~ 720 (866)
|++... +...++.|||.++.+.... ......||++|+|||++.+..++.++|||||||+++||+||+.|+....
T Consensus 178 NIll~~~~~~~~~kl~Dfg~a~~~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~ 254 (349)
T 2w4o_A 178 NLLYATPAPDAPLKIADFGLSKIVEHQV---LMKTVCGTPGYCAPEILRGCAYGPEVDMWSVGIITYILLCGFEPFYDER 254 (349)
T ss_dssp GEEESSSSTTCCEEECCCC-------------------CGGGSCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCTT
T ss_pred cEEEecCCCCCCEEEccCccccccCccc---ccccccCCCCccCHHHhcCCCCCcccchHHHHHHHHHHHhCCCCCCCCc
Confidence 555432 5567889999998776432 2344578999999999999999999999999999999999999987543
Q ss_pred hhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 721 DMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 721 ~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
... .+. .....+.. ....+.....+ ..+.++...|++.||++||++.|+++
T Consensus 255 ~~~--~~~----~~i~~~~~-~~~~~~~~~~~----~~~~~li~~~L~~dP~~Rpt~~e~l~ 305 (349)
T 2w4o_A 255 GDQ--FMF----RRILNCEY-YFISPWWDEVS----LNAKDLVRKLIVLDPKKRLTTFQALQ 305 (349)
T ss_dssp CHH--HHH----HHHHTTCC-CCCTTTTTTSC----HHHHHHHHTTSCSSGGGSCCHHHHHH
T ss_pred ccH--HHH----HHHHhCCC-ccCCchhhhCC----HHHHHHHHHHccCChhhCcCHHHHhc
Confidence 221 111 11111111 11111111222 23455667999999999999999976
|
| >4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 4ehz_A* 4ei4_A* 4fk6_A* 3eyg_A* 3eyh_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=5.1e-14 Score=151.11 Aligned_cols=139 Identities=16% Similarity=0.166 Sum_probs=91.8
Q ss_pred CCCcccCHHHHHHHhcCCccccccCCCCce-eEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCC
Q 038019 641 SKPNIFGYAELRSATKDFNRSNKLGEGGYG-PVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKS 719 (866)
Q Consensus 641 ~~~~~~~~~~~~~~~~dF~~~~~lg~g~~g-~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~ 719 (866)
...|++...+...++.|||.+..+...... .......||..|+|||.+.+..++.++||||||++++||+||+.|+...
T Consensus 153 kp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~ 232 (302)
T 4e5w_A 153 AARNVLVESEHQVKIGDFGLTKAIETDKEYYTVKDDRDSPVFWYAPECLMQSKFYIASDVWSFGVTLHELLTYCDSDSSP 232 (302)
T ss_dssp SGGGEEEEETTEEEECCCTTCEECCTTCCEEECCCCTTCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSH
T ss_pred chheEEEcCCCCEEECcccccccccCCCcceeccCCCCCCccccCCeeecCCCCCcchhHHHHHHHHHHHHHccCCCcch
Confidence 334677766777889999999888755321 2223346788899999999999999999999999999999999885421
Q ss_pred chh--------hhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhcC
Q 038019 720 LDM--------EKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLAGD 787 (866)
Q Consensus 720 ~~~--------~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~~~ 787 (866)
... ........+......+.. ... +......+.+++..|++.||++|||+.||+++|+..
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~---~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~L~~l 300 (302)
T 4e5w_A 233 MALFLKMIGPTHGQMTVTRLVNTLKEGKR-----LPC---PPNCPDEVYQLMRKCWEFQPSNRTSFQNLIEGFEAL 300 (302)
T ss_dssp HHHHHHHHCSCCGGGHHHHHHHHHHTTCC-----CCC---CTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHH
T ss_pred hhHHhhccCCcccccCHHHHHHHHhccCC-----CCC---CCCCCHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHH
Confidence 100 000011111111111111 111 111123455677799999999999999999999854
|
| >3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.29 E-value=1.2e-12 Score=142.62 Aligned_cols=118 Identities=17% Similarity=0.226 Sum_probs=86.0
Q ss_pred CCCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCC-CchhHHHHHHHHHHHHHhcCCCCCCC
Q 038019 641 SKPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHL-TEKADVFSFGVVALEIISGRASSDKS 719 (866)
Q Consensus 641 ~~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~-t~ksDVySfGvvLlEl~tg~~p~~~~ 719 (866)
...|++...+...++.|||.+..+..+.. .....||++|+|||.+....+ +.++|||||||+++||++|+.|+...
T Consensus 157 kp~NIll~~~~~~kL~Dfg~a~~~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~ 233 (335)
T 3dls_A 157 KDENIVIAEDFTIKLIDFGSAAYLERGKL---FYTFCGTIEYCAPEVLMGNPYRGPELEMWSLGVTLYTLVFEENPFCEL 233 (335)
T ss_dssp SGGGEEECTTSCEEECCCTTCEECCTTCC---BCEECSCGGGCCHHHHTTCCBCSHHHHHHHHHHHHHHHHHSSCSCSSG
T ss_pred CHHHEEEcCCCcEEEeecccceECCCCCc---eeccCCCccccChhhhcCCCCCCCcccchhHHHHHHHHHhCCCchhhH
Confidence 33477777777788999999998876543 334579999999999987776 88999999999999999999998642
Q ss_pred chhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 038019 720 LDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAM 783 (866)
Q Consensus 720 ~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~ 783 (866)
... ......+ .....+ .+.++...|++.+|++||++.|+++.
T Consensus 234 ~~~-----------------~~~~~~~--~~~~~~---~l~~li~~~L~~dP~~Rps~~ell~h 275 (335)
T 3dls_A 234 EET-----------------VEAAIHP--PYLVSK---ELMSLVSGLLQPVPERRTTLEKLVTD 275 (335)
T ss_dssp GGG-----------------TTTCCCC--SSCCCH---HHHHHHHHHTCSSGGGSCCHHHHHHC
T ss_pred HHH-----------------HhhccCC--CcccCH---HHHHHHHHHccCChhhCcCHHHHhcC
Confidence 110 0001111 111122 34556669999999999999999874
|
| >1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C | Back alignment and structure |
|---|
Probab=99.29 E-value=1.7e-12 Score=145.13 Aligned_cols=129 Identities=15% Similarity=0.144 Sum_probs=81.4
Q ss_pred CcccCHH---HHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCC
Q 038019 643 PNIFGYA---ELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKS 719 (866)
Q Consensus 643 ~~~~~~~---~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~ 719 (866)
.|++... +...++.|||.++.+.... ......||..|+|||++..+.++.++|||||||+++||+||+.||...
T Consensus 190 ~Nill~~~~~~~~~kl~DFG~a~~~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~ 266 (400)
T 1nxk_A 190 ENLLYTSKRPNAILKLTDFGFAKETTSHN---SLTTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSN 266 (400)
T ss_dssp GGEEESSSSTTCCEEECCCTTCEECC--------------CTTCCGGGSCCCCSSSHHHHHHHHHHHHHHHHSSCSCCCC
T ss_pred ceEEEecCCCCccEEEEecccccccCCCC---ccccCCCCCCccCHhhcCCCCCCCcccHHHHHHHHHHHHhCCCCCCCC
Confidence 3565554 4567899999998775432 233457899999999999999999999999999999999999999754
Q ss_pred chhhh-hcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 038019 720 LDMEK-IYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAM 783 (866)
Q Consensus 720 ~~~~~-~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~ 783 (866)
..... ......+. .+.. ..-.+...... ..+.++...|++.||++|||+.||++.
T Consensus 267 ~~~~~~~~~~~~i~----~~~~-~~~~~~~~~~s----~~~~~li~~~L~~dP~~Rpt~~eil~h 322 (400)
T 1nxk_A 267 HGLAISPGMKTRIR----MGQY-EFPNPEWSEVS----EEVKMLIRNLLKTEPTQRMTITEFMNH 322 (400)
T ss_dssp TTCSSCCSHHHHHH----HTCC-CCCTTTTTTSC----HHHHHHHHTTSCSSGGGSCCHHHHHHS
T ss_pred ccccccHHHHHHHH----cCcc-cCCCcccccCC----HHHHHHHHHHCCCChhHCcCHHHHhcC
Confidence 32211 01111111 1111 11111111122 234556669999999999999999874
|
| >4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.29 E-value=2.1e-12 Score=139.08 Aligned_cols=138 Identities=20% Similarity=0.243 Sum_probs=83.1
Q ss_pred CcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeec-CCCCchhHHHHHHHHHHHHHhcCCCCCCCch
Q 038019 643 PNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMR-GHLTEKADVFSFGVVALEIISGRASSDKSLD 721 (866)
Q Consensus 643 ~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~-~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~ 721 (866)
.|++...+...++.|||.+..+.... ..+....||.+|+|||.+.+ ..++.++|||||||+++||+||+.|+.....
T Consensus 131 ~Nil~~~~~~~kl~Dfg~~~~~~~~~--~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~ 208 (311)
T 4agu_A 131 ENILITKHSVIKLCDFGFARLLTGPS--DYYDDEVATRWYRSPELLVGDTQYGPPVDVWAIGCVFAELLSGVPLWPGKSD 208 (311)
T ss_dssp GGEEECTTSCEEECCCTTCEECC--------------GGGCCHHHHHTCSCCCTHHHHHHHHHHHHHHHHSSCSCCCSSH
T ss_pred hhEEEcCCCCEEEeeCCCchhccCcc--cccCCCcCCccccChHHHhcCCCCCcchhhHHHHHHHHHHHhCCCCCCCCCH
Confidence 46666666677899999998876432 23445678999999999875 6789999999999999999999999976554
Q ss_pred hhhhcHHHHHH--------HHhhcCCc---ccccCCccc-c---cCHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 722 MEKIYLLEWAW--------NLHENNQS---FGLVDPTLT-E---FNDKEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 722 ~~~~~l~~~~~--------~~~~~~~~---~~~~d~~l~-~---~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
.+......... ..+..... ..+.++.-. . ........+.++...|++.||++|||+.||++
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~ 284 (311)
T 4agu_A 209 VDQLYLIRKTLGDLIPRHQQVFSTNQYFSGVKIPDPEDMEPLELKFPNISYPALGLLKGCLHMDPTERLTCEQLLH 284 (311)
T ss_dssp HHHHHHHHHHHCSCCHHHHHHHHTCGGGTTCCCCCCSSCCCHHHHCTTCCHHHHHHHHHHCCSSTTTSCCHHHHHT
T ss_pred HHHHHHHHHHhcccccccccccccccccccCcCCCccccchhhhhcccccHHHHHHHHHHccCChhhcCCHHHHhc
Confidence 33222211110 01111100 011111110 0 00111234566778999999999999999985
|
| >1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=7.1e-13 Score=144.05 Aligned_cols=131 Identities=20% Similarity=0.191 Sum_probs=89.5
Q ss_pred CCCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHh-cCCCCCCC
Q 038019 641 SKPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIIS-GRASSDKS 719 (866)
Q Consensus 641 ~~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~t-g~~p~~~~ 719 (866)
...|++...+...++.|||.++....... .....++.+|+|||.+....++.++||||||++++||+| |+.|+...
T Consensus 169 kp~NIl~~~~~~~kL~Dfg~~~~~~~~~~---~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~pf~~~ 245 (327)
T 1fvr_A 169 AARNILVGENYVAKIADFGLSRGQEVYVK---KTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGM 245 (327)
T ss_dssp SGGGEEECGGGCEEECCTTCEESSCEECC---C----CCTTTCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTC
T ss_pred ccceEEEcCCCeEEEcccCcCcccccccc---ccCCCCCccccChhhhccccCCchhcchHHHHHHHHHHcCCCCCCCCC
Confidence 33477777777788999998875432111 112246889999999988899999999999999999998 99998754
Q ss_pred chhhhhcHHHHHHHHhhcCCcccccCCccc-ccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhcCcCC
Q 038019 720 LDMEKIYLLEWAWNLHENNQSFGLVDPTLT-EFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLAGDIEV 790 (866)
Q Consensus 720 ~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~-~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~~~~~~ 790 (866)
...+ + ......+. .+... ..+ ..+.++...|++.+|++||++.|+++.|+.....
T Consensus 246 ~~~~---~----~~~~~~~~-----~~~~~~~~~----~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~~~ 301 (327)
T 1fvr_A 246 TCAE---L----YEKLPQGY-----RLEKPLNCD----DEVYDLMRQCWREKPYERPSFAQILVSLNRMLEE 301 (327)
T ss_dssp CHHH---H----HHHGGGTC-----CCCCCTTBC----HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHS
T ss_pred cHHH---H----HHHhhcCC-----CCCCCCCCC----HHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHh
Confidence 3221 1 11122211 11111 122 2355667799999999999999999999865543
|
| >2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=5e-13 Score=158.72 Aligned_cols=132 Identities=18% Similarity=0.204 Sum_probs=90.3
Q ss_pred CCCCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHh-cCCCCCC
Q 038019 640 GSKPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIIS-GRASSDK 718 (866)
Q Consensus 640 ~~~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~t-g~~p~~~ 718 (866)
....|++...+...++.|||.++.+........ ....+|+.|||||.+....++.++|||||||++|||++ |+.|+..
T Consensus 517 ikp~NILl~~~~~vkL~DFG~a~~~~~~~~~~~-~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~ellt~g~~Pf~~ 595 (656)
T 2j0j_A 517 IAARNVLVSSNDCVKLGDFGLSRYMEDSTYYKA-SKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQG 595 (656)
T ss_dssp CSGGGEEEEETTEEEECCCCCCCSCCC-----------CCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTT
T ss_pred cchHhEEEeCCCCEEEEecCCCeecCCCcceec-cCCCCCcceeCHHHhcCCCCCchhhHHHHHHHHHHHHHcCCCCCCC
Confidence 333477777777788999999998866543222 22357789999999999999999999999999999997 9999875
Q ss_pred CchhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhcC
Q 038019 719 SLDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLAGD 787 (866)
Q Consensus 719 ~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~~~ 787 (866)
....+ +...+. .+.. +.+.. .....+.+++..|++.||++||++.||+++|+..
T Consensus 596 ~~~~~---~~~~i~----~~~~-----~~~~~---~~~~~l~~li~~~l~~dP~~RPs~~el~~~L~~i 649 (656)
T 2j0j_A 596 VKNND---VIGRIE----NGER-----LPMPP---NCPPTLYSLMTKCWAYDPSRRPRFTELKAQLSTI 649 (656)
T ss_dssp CCHHH---HHHHHH----HTCC-----CCCCT---TCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred CCHHH---HHHHHH----cCCC-----CCCCc---cccHHHHHHHHHHcCCChhHCcCHHHHHHHHHHH
Confidence 44322 222221 1111 11111 1123455677799999999999999999999854
|
| >1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ... | Back alignment and structure |
|---|
Probab=99.29 E-value=1.6e-12 Score=141.72 Aligned_cols=123 Identities=19% Similarity=0.175 Sum_probs=85.4
Q ss_pred CCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCCch
Q 038019 642 KPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSLD 721 (866)
Q Consensus 642 ~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~ 721 (866)
..|++...+...++.|||.++.....+ .......||+.|+|||.+.+..++.++|||||||+++||+||+.|+.....
T Consensus 133 p~NIll~~~g~vkL~DFG~a~~~~~~~--~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~ 210 (337)
T 1o6l_A 133 LENLMLDKDGHIKITDFGLCKEGISDG--ATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDH 210 (337)
T ss_dssp GGGEEECTTSCEEECCCTTCBCSCCTT--CCBCCCEECGGGCCGGGGSSSCBCTTHHHHHHHHHHHHHHHSSCSSCCSSH
T ss_pred HHHEEECCCCCEEEeeccchhhcccCC--CcccccccChhhCChhhhcCCCCCchhhcccchhHHHHHhcCCCCCCCCCH
Confidence 347777777778899999988643322 122345689999999999999999999999999999999999999975432
Q ss_pred hhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCC-----CHHHHHH
Q 038019 722 MEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRP-----PMSRVVA 782 (866)
Q Consensus 722 ~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RP-----sm~~V~~ 782 (866)
.. +.+.+ .. +. ..+......+ +.++...|++.||++|| ++.||++
T Consensus 211 ~~---~~~~i---~~-~~------~~~p~~~s~~---~~~li~~lL~~dP~~R~g~~~~~~~ei~~ 260 (337)
T 1o6l_A 211 ER---LFELI---LM-EE------IRFPRTLSPE---AKSLLAGLLKKDPKQRLGGGPSDAKEVME 260 (337)
T ss_dssp HH---HHHHH---HH-CC------CCCCTTSCHH---HHHHHHHHTCSSTTTSTTCSTTTHHHHHT
T ss_pred HH---HHHHH---Hc-CC------CCCCCCCCHH---HHHHHHHHhhcCHHHhcCCCCCCHHHHHc
Confidence 21 11111 11 11 1111111223 44455699999999999 8888864
|
| >1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A | Back alignment and structure |
|---|
Probab=99.29 E-value=1.1e-12 Score=145.19 Aligned_cols=127 Identities=15% Similarity=0.135 Sum_probs=81.3
Q ss_pred HHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCCchhhhh---cH
Q 038019 651 LRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSLDMEKI---YL 727 (866)
Q Consensus 651 ~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~~~~~---~l 727 (866)
...++.|||.+..++... ....||.+|+|||.+.+..++.++|||||||+++||+||+.|+......... ..
T Consensus 175 ~~~kl~Dfg~a~~~~~~~-----~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~~~~ 249 (373)
T 1q8y_A 175 IQIKIADLGNACWYDEHY-----TNSIQTREYRSPEVLLGAPWGCGADIWSTACLIFELITGDFLFEPDEGHSYTKDDDH 249 (373)
T ss_dssp EEEEECCCTTCEETTBCC-----CSCCSCGGGCCHHHHHTCCCCTHHHHHHHHHHHHHHHHSSCCC---------CHHHH
T ss_pred ceEEEcccccccccCCCC-----CCCCCCccccCcHHHhCCCCCchHhHHHHHHHHHHHHhCCCCCCCCcccccCChHHH
Confidence 356789999998876432 2346899999999999999999999999999999999999999754321100 01
Q ss_pred HHHHHHHh------------------hcCC-cccccCCcc----------cccCHHHHHHHHHHHHHccCCCCCCCCCHH
Q 038019 728 LEWAWNLH------------------ENNQ-SFGLVDPTL----------TEFNDKEALRVIGVALLCTQTSPMMRPPMS 778 (866)
Q Consensus 728 ~~~~~~~~------------------~~~~-~~~~~d~~l----------~~~~~~~~~~~~~la~~C~~~~p~~RPsm~ 778 (866)
...+.... .... ...+..... ...+......+.++...|++.||++|||+.
T Consensus 250 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ 329 (373)
T 1q8y_A 250 IAQIIELLGELPSYLLRNGKYTRTFFNSRGLLRNISKLKFWPLEDVLTEKYKFSKDEAKEISDFLSPMLQLDPRKRADAG 329 (373)
T ss_dssp HHHHHHHHCSCCHHHHHHCTTHHHHBCC--CBSSCCCCCBCCHHHHHHHTTCCCHHHHHHHHHHHGGGGCSSTTTCBCHH
T ss_pred HHHHHHhcCCCCHHHHhccchhhhhcCCcchhcccccccccchhhhhhhcccCCcchHHHHHHHHHHHhccCccccCCHH
Confidence 11111100 0000 000000000 012345556777888899999999999999
Q ss_pred HHHH
Q 038019 779 RVVA 782 (866)
Q Consensus 779 ~V~~ 782 (866)
||++
T Consensus 330 ell~ 333 (373)
T 1q8y_A 330 GLVN 333 (373)
T ss_dssp HHHT
T ss_pred HHhh
Confidence 9976
|
| >3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 4ec9_A* 4ec8_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* 4bch_A* 4bci_A* 4bcj_A* 4bcf_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=1e-12 Score=144.27 Aligned_cols=140 Identities=10% Similarity=0.051 Sum_probs=88.9
Q ss_pred CCcccCHHHHHHHhcCCccccccCCCC--ceeEEEeecCCCCccCceeeec-CCCCchhHHHHHHHHHHHHHhcCCCCCC
Q 038019 642 KPNIFGYAELRSATKDFNRSNKLGEGG--YGPVYKVTANSYGYLAPEYAMR-GHLTEKADVFSFGVVALEIISGRASSDK 718 (866)
Q Consensus 642 ~~~~~~~~~~~~~~~dF~~~~~lg~g~--~g~vy~~~~gt~gY~aPE~~~~-~~~t~ksDVySfGvvLlEl~tg~~p~~~ 718 (866)
..|++...+...++.|||.++.+.... ....+....||.+|+|||.+.+ ..++.++|||||||+++||+||+.|+..
T Consensus 152 p~NIl~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~ 231 (351)
T 3mi9_A 152 AANVLITRDGVLKLADFGLARAFSLAKNSQPNRYTNRVVTLWYRPPELLLGERDYGPPIDLWGAGCIMAEMWTRSPIMQG 231 (351)
T ss_dssp GGGEEECTTSCEEECCCTTCEECCCCSSSSCCCCCSSCSCGGGCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCC
T ss_pred HHHEEEcCCCCEEEccchhcccccccccccccccCCcccccCccCchhhcCCCCCCcHhHHHHHHHHHHHHHhCCCCCCC
Confidence 346777667778899999998776322 1223445578999999998875 5689999999999999999999999986
Q ss_pred CchhhhhcHHHHHHHHhhcCCcccc-----------cCCcccccCHHH------HHHHHHHHHHccCCCCCCCCCHHHHH
Q 038019 719 SLDMEKIYLLEWAWNLHENNQSFGL-----------VDPTLTEFNDKE------ALRVIGVALLCTQTSPMMRPPMSRVV 781 (866)
Q Consensus 719 ~~~~~~~~l~~~~~~~~~~~~~~~~-----------~d~~l~~~~~~~------~~~~~~la~~C~~~~p~~RPsm~~V~ 781 (866)
.........+............... .... .....+. ...+.++...|++.||++|||+.|++
T Consensus 232 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l 310 (351)
T 3mi9_A 232 NTEQHQLALISQLCGSITPEVWPNVDNYELYEKLELVKGQ-KRKVKDRLKAYVRDPYALDLIDKLLVLDPAQRIDSDDAL 310 (351)
T ss_dssp SSHHHHHHHHHHHHCCCCTTTSTTGGGCGGGTSSCCCSSC-CCCHHHHHHHHHCCHHHHHHHHHHSCSSGGGSCCHHHHH
T ss_pred CChHHHHHHHHHHhCCCChhhccccccchhhccccccccc-ccCHHHHhhhccCChHHHHHHHHHhcCChhhCCCHHHHh
Confidence 5433322211111110100000000 0000 0000111 12356788899999999999999987
Q ss_pred H
Q 038019 782 A 782 (866)
Q Consensus 782 ~ 782 (866)
+
T Consensus 311 ~ 311 (351)
T 3mi9_A 311 N 311 (351)
T ss_dssp T
T ss_pred C
Confidence 5
|
| >4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.29 E-value=9.5e-13 Score=145.88 Aligned_cols=126 Identities=19% Similarity=0.153 Sum_probs=86.1
Q ss_pred CCCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeec---CCCCchhHHHHHHHHHHHHHhcCCCCC
Q 038019 641 SKPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMR---GHLTEKADVFSFGVVALEIISGRASSD 717 (866)
Q Consensus 641 ~~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~---~~~t~ksDVySfGvvLlEl~tg~~p~~ 717 (866)
...|++...+...++.|||.+..+..+.. .....||++|+|||++.. ..++.++|||||||+++||+||+.|+.
T Consensus 142 kp~NIll~~~g~vkL~DFG~a~~~~~~~~---~~~~~gt~~Y~aPE~~~~~~~~~~~~~~DiwSlG~il~elltG~~Pf~ 218 (384)
T 4fr4_A 142 KPDNILLDEHGHVHITDFNIAAMLPRETQ---ITTMAGTKPYMAPEMFSSRKGAGYSFAVDWWSLGVTAYELLRGRRPYH 218 (384)
T ss_dssp SGGGEEECTTSCEEECCCTTCEECCTTCC---BCCCCSCGGGCCGGGTCCCSSCCBCTTHHHHHHHHHHHHHHHSSCSSC
T ss_pred cHHHeEECCCCCEEEeccceeeeccCCCc---eeccCCCccccCCeeeccCCCCCCCccceeechHHHHHHHHhCCCCCC
Confidence 33477777777888999999998865532 334579999999999864 458999999999999999999999997
Q ss_pred CCchhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCC-HHHHHH
Q 038019 718 KSLDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPP-MSRVVA 782 (866)
Q Consensus 718 ~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPs-m~~V~~ 782 (866)
.........+...... .. ....... ...+..+...|++.+|++||+ +.+|.+
T Consensus 219 ~~~~~~~~~~~~~~~~----~~------~~~p~~~---s~~~~~li~~lL~~dP~~R~s~~~~l~~ 271 (384)
T 4fr4_A 219 IRSSTSSKEIVHTFET----TV------VTYPSAW---SQEMVSLLKKLLEPNPDQRFSQLSDVQN 271 (384)
T ss_dssp CCTTSCHHHHHHHHHH----CC------CCCCTTS---CHHHHHHHHHHSCSSGGGSCCSHHHHHT
T ss_pred CCCCccHHHHHHHHhh----cc------cCCCCcC---CHHHHHHHHHHhcCCHhHhcccHHHHHc
Confidence 5433222222221111 10 1111111 223455666999999999998 666653
|
| >2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=2.1e-12 Score=146.11 Aligned_cols=119 Identities=21% Similarity=0.284 Sum_probs=77.3
Q ss_pred HHHhcCCccccccCCCCc--eeEEEeecCCCCccCceeeec-------CCCCchhHHHHHHHHHHHHHh-cCCCCCCCch
Q 038019 652 RSATKDFNRSNKLGEGGY--GPVYKVTANSYGYLAPEYAMR-------GHLTEKADVFSFGVVALEIIS-GRASSDKSLD 721 (866)
Q Consensus 652 ~~~~~dF~~~~~lg~g~~--g~vy~~~~gt~gY~aPE~~~~-------~~~t~ksDVySfGvvLlEl~t-g~~p~~~~~~ 721 (866)
..++.|||.++.+..+.. ........||++|+|||++.. +.++.++|||||||+++||+| |+.|+.....
T Consensus 166 ~~kL~DFG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~DiwSlG~il~ellt~g~~Pf~~~~~ 245 (434)
T 2rio_A 166 RILISDFGLCKKLDSGQSSFRTNLNNPSGTSGWRAPELLEESNNLQTKRRLTRSIDIFSMGCVFYYILSKGKHPFGDKYS 245 (434)
T ss_dssp EEEECCCTTCEECCC--------------CCTTSCHHHHSCCCTTSCCCCCCTHHHHHHHHHHHHHHHTTSCCTTCSTTT
T ss_pred EEEEcccccceecCCCCccceeeecCCCCCCCccCHHHhccccccccccCcchhhhhHhHHHHHHHHHhCCCCCCCCchh
Confidence 567899999998876532 222345579999999999865 679999999999999999999 9999875432
Q ss_pred hhhhcHHHHHHHHhhcCCcccccCCcccc-cCHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 722 MEKIYLLEWAWNLHENNQSFGLVDPTLTE-FNDKEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 722 ~~~~~l~~~~~~~~~~~~~~~~~d~~l~~-~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
.. . ........ .+.+.. ........+.+++..|++.||++||++.||++
T Consensus 246 ~~-~---~i~~~~~~--------~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~ 295 (434)
T 2rio_A 246 RE-S---NIIRGIFS--------LDEMKCLHDRSLIAEATDLISQMIDHDPLKRPTAMKVLR 295 (434)
T ss_dssp HH-H---HHHHTCCC--------CCCCTTCCCHHHHHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred hH-H---HHhcCCCC--------cccccccccccchHHHHHHHHHHhhCChhhCCCHHHHHh
Confidence 21 1 11111000 011111 12333456677888999999999999999975
|
| >2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=9.5e-13 Score=144.51 Aligned_cols=129 Identities=15% Similarity=0.158 Sum_probs=84.2
Q ss_pred HHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCCchhhhhcHH
Q 038019 649 AELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSLDMEKIYLL 728 (866)
Q Consensus 649 ~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~~~~~~l~ 728 (866)
.+...++.|||.+...+... ....||.+|+|||.+.+..++.++|||||||+++||+||+.|+......+.....
T Consensus 177 ~~~~~kl~Dfg~~~~~~~~~-----~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~~ 251 (355)
T 2eu9_A 177 KNTSIRVADFGSATFDHEHH-----TTIVATRHYRPPEVILELGWAQPCDVWSIGCILFEYYRGFTLFQTHENREHLVMM 251 (355)
T ss_dssp SCCCEEECCCTTCEETTSCC-----CSSCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHH
T ss_pred CCCcEEEeecCccccccccc-----cCCcCCCcccCCeeeecCCCCCccchHHHHHHHHHHHhCCCCCCCCCHHHHHHHH
Confidence 44567889999998766443 2346899999999999999999999999999999999999999865433222111
Q ss_pred HHHHHH-----hhcCCcccc-------cCC-------------cc---cccCHHHHHHHHHHHHHccCCCCCCCCCHHHH
Q 038019 729 EWAWNL-----HENNQSFGL-------VDP-------------TL---TEFNDKEALRVIGVALLCTQTSPMMRPPMSRV 780 (866)
Q Consensus 729 ~~~~~~-----~~~~~~~~~-------~d~-------------~l---~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V 780 (866)
...... ......... .+. .+ ......+...+.++...|++.||++|||+.||
T Consensus 252 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt~~e~ 331 (355)
T 2eu9_A 252 EKILGPIPSHMIHRTRKQKYFYKGGLVWDENSSDGRYVKENCKPLKSYMLQDSLEHVQLFDLMRRMLEFDPAQRITLAEA 331 (355)
T ss_dssp HHHHCCCCHHHHHHCSCGGGEETTEECCCTTSHHHHHHHHHCCCGGGGCSCCSHHHHHHHHHHHHHTCSSTTTSCCHHHH
T ss_pred HHHcCCCcHHHhhhccchhhhcccccccccccchhccccccCCcccccccccchhHHHHHHHHHHHhcCChhhCcCHHHH
Confidence 111100 000000000 000 00 00111233466778889999999999999998
Q ss_pred HH
Q 038019 781 VA 782 (866)
Q Consensus 781 ~~ 782 (866)
++
T Consensus 332 l~ 333 (355)
T 2eu9_A 332 LL 333 (355)
T ss_dssp TT
T ss_pred hc
Confidence 63
|
| >3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} SCOP: d.144.1.7 PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A | Back alignment and structure |
|---|
Probab=99.28 E-value=7.6e-13 Score=141.29 Aligned_cols=137 Identities=15% Similarity=0.133 Sum_probs=86.8
Q ss_pred CCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCC-CCchhHHHHHHHHHHHHHhcCCCCCCCc
Q 038019 642 KPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGH-LTEKADVFSFGVVALEIISGRASSDKSL 720 (866)
Q Consensus 642 ~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~-~t~ksDVySfGvvLlEl~tg~~p~~~~~ 720 (866)
..|++...+...++.|||.++.++... ..+....||..|+|||.+.+.. ++.++|||||||+++||+||+.|+....
T Consensus 129 p~Nil~~~~~~~kl~Dfg~~~~~~~~~--~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~~~~p~~~~~ 206 (292)
T 3o0g_A 129 PQNLLINRNGELKLANFGLARAFGIPV--RCYSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGN 206 (292)
T ss_dssp GGGEEECTTSCEEECCCTTCEECCSCC--SCCCSCCSCGGGCCHHHHTTCSCCCTHHHHHHHHHHHHHHTTTSCCSCCCS
T ss_pred HHHEEEcCCCCEEEeecccceecCCcc--ccccCCccccCCcChHHHcCCCCcCchHHHHHHHHHHHHHHHcCCCCcCCC
Confidence 346776666678899999998876432 2234457899999999987765 8999999999999999999988865433
Q ss_pred hhhhhcHHHHHHHHhhc---CCcc---cccC----------CcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 721 DMEKIYLLEWAWNLHEN---NQSF---GLVD----------PTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 721 ~~~~~~l~~~~~~~~~~---~~~~---~~~d----------~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
... .....+...... .... +..+ ..+..........+.++...|++.||++|||+.|+++
T Consensus 207 ~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~ 282 (292)
T 3o0g_A 207 DVD--DQLKRIFRLLGTPTEEQWPSMTKLPDYKPYPMYPATTSLVNVVPKLNATGRDLLQNLLKCNPVQRISAEEALQ 282 (292)
T ss_dssp SHH--HHHHHHHHHHCCCCTTTCTTGGGSTTCCCCCCCCTTCCCTTTSTTCCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred CHH--HHHHHHHHHhCCCChhhhhhhcccccccccccccCCcchhhcccccChHHHHHHHHHhccChhhCCCHHHHhc
Confidence 221 122222221111 0000 0000 0000111111234456667999999999999999875
|
| >1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B | Back alignment and structure |
|---|
Probab=99.28 E-value=8.4e-13 Score=143.25 Aligned_cols=134 Identities=15% Similarity=0.131 Sum_probs=87.9
Q ss_pred CcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCCchh
Q 038019 643 PNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSLDM 722 (866)
Q Consensus 643 ~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~~ 722 (866)
.|++...+...++.|||.++.++... ......||..|+|||.+..+.++.++|||||||+++||+||+.|+......
T Consensus 149 ~Nili~~~~~~kl~Dfg~~~~~~~~~---~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~ 225 (326)
T 1blx_A 149 QNILVTSSGQIKLADFGLARIYSFQM---ALTSVVVTLWYRAPEVLLQSSYATPVDLWSVGCIFAEMFRRKPLFRGSSDV 225 (326)
T ss_dssp GGEEECTTCCEEECSCCSCCCCCGGG---GGCCCCCCCTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHH
T ss_pred HHeEEcCCCCEEEecCcccccccCCC---CccccccccceeCHHHHhcCCCCcchhHHHHHHHHHHHHcCCCCCCCCCHH
Confidence 36666666677899999998776432 123456899999999999999999999999999999999999999865432
Q ss_pred hhhcHHHHHHHHhhc---CCccc-c------c----CCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 723 EKIYLLEWAWNLHEN---NQSFG-L------V----DPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 723 ~~~~l~~~~~~~~~~---~~~~~-~------~----d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
+ ....+...... ..... . . ...+..........+.++...|++.||++||++.|+++
T Consensus 226 ~---~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~ 296 (326)
T 1blx_A 226 D---QLGKILDVIGLPGEEDWPRDVALPRQAFHSKSAQPIEKFVTDIDELGKDLLLKCLTFNPAKRISAYSALS 296 (326)
T ss_dssp H---HHHHHHHHHCCCCGGGSCTTCSSCGGGSCCCCCCCGGGTCCSCCHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred H---HHHHHHHHcCCCCcccCccccccchhhhcccCcchhhhccccCCHHHHHHHHHHcCCCcccCCCHHHHhc
Confidence 2 22222221110 00000 0 0 00111111111234456677999999999999999974
|
| >2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B* | Back alignment and structure |
|---|
Probab=99.28 E-value=4.1e-13 Score=142.54 Aligned_cols=125 Identities=16% Similarity=0.228 Sum_probs=89.2
Q ss_pred CCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCCch
Q 038019 642 KPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSLD 721 (866)
Q Consensus 642 ~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~ 721 (866)
..|++...+...++.|||.+..+..+.. .....||.+|+|||......++.++||||||++++||+||+.|+..
T Consensus 150 p~Nil~~~~~~~kl~Dfg~~~~~~~~~~---~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~~~~~~~--- 223 (284)
T 2a19_B 150 PSNIFLVDTKQVKIGDFGLVTSLKNDGK---RTRSKGTLRYMSPEQISSQDYGKEVDLYALGLILAELLHVCDTAFE--- 223 (284)
T ss_dssp GGGEEEEETTEEEECCCTTCEESSCCSC---CCCCCSCCTTSCHHHHHCSCCCTHHHHHHHHHHHHHHHSCCSSHHH---
T ss_pred HHHEEEcCCCCEEECcchhheecccccc---ccccCCcccccChhhhccCCCcchhhhHHHHHHHHHHHhcCCcchh---
Confidence 3467666666788999999988876542 2234689999999999999999999999999999999999987531
Q ss_pred hhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhcCcC
Q 038019 722 MEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLAGDIE 789 (866)
Q Consensus 722 ~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~~~~~ 789 (866)
.. .+ ......+.. ...... .+.++...|++.||++||++.|+++.|+....
T Consensus 224 --~~---~~-~~~~~~~~~--------~~~~~~---~~~~li~~~l~~dp~~Rps~~e~l~~l~~~~~ 274 (284)
T 2a19_B 224 --TS---KF-FTDLRDGII--------SDIFDK---KEKTLLQKLLSKKPEDRPNTSEILRTLTVWKK 274 (284)
T ss_dssp --HH---HH-HHHHHTTCC--------CTTSCH---HHHHHHHHHTCSSGGGSCCHHHHHHHHHHHTC
T ss_pred --HH---HH-HHHhhcccc--------cccCCH---HHHHHHHHHccCChhhCcCHHHHHHHHHHHhh
Confidence 11 11 111122211 111112 24456669999999999999999999985443
|
| >1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase, splicing, human, 10Z-hymendialdisine, structural genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=1.1e-12 Score=142.97 Aligned_cols=126 Identities=17% Similarity=0.170 Sum_probs=82.9
Q ss_pred HHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCCchhhhhcHHHHH
Q 038019 652 RSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSLDMEKIYLLEWA 731 (866)
Q Consensus 652 ~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~~~~~~l~~~~ 731 (866)
..++.|||.+...+... ....||.+|+|||.+.+..++.++|||||||+++||+||+.|+......+........
T Consensus 175 ~~kl~Dfg~~~~~~~~~-----~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~~~~~ 249 (339)
T 1z57_A 175 DIKVVDFGSATYDDEHH-----STLVSTRHYRAPEVILALGWSQPCDVWSIGCILIEYYLGFTVFPTHDSKEHLAMMERI 249 (339)
T ss_dssp CEEECCCSSCEETTSCC-----CSSCSCGGGCCHHHHTTSCCCTHHHHHHHHHHHHHHHHSSCSCCCSCHHHHHHHHHHH
T ss_pred CceEeeCcccccCcccc-----ccccCCccccChHHhhCCCCCcchhhHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHH
Confidence 45788999988765432 2346899999999999999999999999999999999999999865433322222111
Q ss_pred HHH-----hhcCCcccc---------------------cCCcc--cccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 732 WNL-----HENNQSFGL---------------------VDPTL--TEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 732 ~~~-----~~~~~~~~~---------------------~d~~l--~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
... ......... ..+.. ..........+.+++..|++.||++|||+.||++
T Consensus 250 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt~~ell~ 328 (339)
T 1z57_A 250 LGPLPKHMIQKTRKRKYFHHDRLDWDEHSSAGRYVSRACKPLKEFMLSQDVEHERLFDLIQKMLEYDPAKRITLREALK 328 (339)
T ss_dssp HCSCCHHHHHHCSCGGGEETTEECCCTTSHHHHHHHHHCCCGGGGCSCCSHHHHHHHHHHHHHTCSSTTTSCCHHHHTT
T ss_pred hCCCCHHHHhhccchhHHhhccccccccccccchhhhcCcchhhhcccchhhHHHHHHHHHHHhCcCcccccCHHHHhc
Confidence 100 000000000 00000 0112234456778888999999999999999874
|
| >3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} SCOP: d.144.1.7 | Back alignment and structure |
|---|
Probab=99.28 E-value=1.6e-12 Score=139.06 Aligned_cols=134 Identities=19% Similarity=0.236 Sum_probs=91.0
Q ss_pred CCcccCHHHHHHHhcCCccccccCCCCcee--EEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCC
Q 038019 642 KPNIFGYAELRSATKDFNRSNKLGEGGYGP--VYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKS 719 (866)
Q Consensus 642 ~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~--vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~ 719 (866)
..|++...+...++.|||.++.+....+.. ......+|..|+|||...+..++.++||||||++++||+||+.|+...
T Consensus 152 p~Nili~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~~~~~~ 231 (298)
T 3pls_A 152 ARNCMLDESFTVKVADFGLARDILDREYYSVQQHRHARLPVKWTALESLQTYRFTTKSDVWSFGVLLWELLTRGAPPYRH 231 (298)
T ss_dssp GGGEEECTTCCEEECCTTSSCTTTTGGGGCSCCSSCTTCGGGGSCHHHHTTCCCCHHHHHHHHHHHHHHHHHTSCCTTTT
T ss_pred cceEEEcCCCcEEeCcCCCcccccCCcccccccCcCCCCCccccChhhhccCCCChhhchhhHHHHHHHHhhCCCCCCcc
Confidence 346776666678899999998776543211 122346788999999999999999999999999999999966664432
Q ss_pred chhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhcCcC
Q 038019 720 LDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLAGDIE 789 (866)
Q Consensus 720 ~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~~~~~ 789 (866)
... ..+...+.. +.. +....... ..+.+++..|++.+|++|||+.+++++|+....
T Consensus 232 ~~~--~~~~~~~~~----~~~-----~~~~~~~~---~~l~~li~~~l~~~p~~Rps~~~ll~~l~~~~~ 287 (298)
T 3pls_A 232 IDP--FDLTHFLAQ----GRR-----LPQPEYCP---DSLYQVMQQCWEADPAVRPTFRVLVGEVEQIVS 287 (298)
T ss_dssp SCG--GGHHHHHHT----TCC-----CCCCTTCC---HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred CCH--HHHHHHhhc----CCC-----CCCCccch---HHHHHHHHHHccCChhhCcCHHHHHHHHHHHHH
Confidence 221 222222221 110 11111112 235566679999999999999999999986543
|
| >2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=1.1e-12 Score=140.54 Aligned_cols=134 Identities=25% Similarity=0.308 Sum_probs=81.6
Q ss_pred CcccCHHHHHHHhcCCccccccCCCCc---eeEEEeecCCCCccCceeeec-CCCCchhHHHHHHHHHHHHHhcCCCCCC
Q 038019 643 PNIFGYAELRSATKDFNRSNKLGEGGY---GPVYKVTANSYGYLAPEYAMR-GHLTEKADVFSFGVVALEIISGRASSDK 718 (866)
Q Consensus 643 ~~~~~~~~~~~~~~dF~~~~~lg~g~~---g~vy~~~~gt~gY~aPE~~~~-~~~t~ksDVySfGvvLlEl~tg~~p~~~ 718 (866)
.|++...+...++.|||.+..+..++. ........||.+|+|||.... ..++.++||||||++++||+||+.|+..
T Consensus 150 ~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~ 229 (303)
T 2vwi_A 150 GNILLGEDGSVQIADFGVSAFLATGGDITRNKVRKTFVGTPCWMAPEVMEQVRGYDFKADIWSFGITAIELATGAAPYHK 229 (303)
T ss_dssp GGEEECTTCCEEECCCHHHHHCC---------------CCCTTCCHHHHHHHHCCCTHHHHHHHHHHHHHHHHSSCTTTT
T ss_pred hhEEEcCCCCEEEEeccchheeccCCCccchhhhcccCCCccccCHHHhccccCCCchhhHHHHHHHHHHHHhCCCCCcc
Confidence 366666666778999999887765432 122334579999999999875 5789999999999999999999999976
Q ss_pred CchhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 719 SLDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 719 ~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
...... .................++....... ..+.+++..|++.||++||++.||++
T Consensus 230 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~li~~~l~~dp~~Rps~~~ll~ 287 (303)
T 2vwi_A 230 YPPMKV---LMLTLQNDPPSLETGVQDKEMLKKYG---KSFRKMISLCLQKDPEKRPTAAELLR 287 (303)
T ss_dssp SCGGGH---HHHHHTSSCCCTTC-----CCCCCCC---HHHHHHHHHHCCSSGGGSCCHHHHHT
T ss_pred CchhhH---HHHHhccCCCccccccccchhhhhhh---HHHHHHHHHHccCChhhCcCHHHHhh
Confidence 543221 11111100000000111122211112 23455667999999999999999975
|
| >4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.28 E-value=1.5e-12 Score=144.78 Aligned_cols=126 Identities=15% Similarity=0.150 Sum_probs=83.6
Q ss_pred CCCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCCc
Q 038019 641 SKPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSL 720 (866)
Q Consensus 641 ~~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~ 720 (866)
...|++...+...++.|||.++.....+ .......||+.|+|||++.+..++.++|||||||+++||+||+.|++...
T Consensus 180 Kp~NILl~~~g~ikL~DFGla~~~~~~~--~~~~~~~gt~~Y~aPE~l~~~~~~~~~DiwslGvllyell~G~~Pf~~~~ 257 (396)
T 4dc2_A 180 KLDNVLLDSEGHIKLTDYGMCKEGLRPG--DTTSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVG 257 (396)
T ss_dssp CGGGEEECTTSCEEECCCTTCBCCCCTT--CCBCCCCBCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSTTTT
T ss_pred CHHHEEECCCCCEEEeecceeeecccCC--CccccccCCcccCCchhhcCCCCChHHHHHHHHHHHHHHHhCCCCCcccc
Confidence 3347777777788999999998633221 22344579999999999999999999999999999999999999996432
Q ss_pred hhh--hhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCH
Q 038019 721 DME--KIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPM 777 (866)
Q Consensus 721 ~~~--~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm 777 (866)
..+ .....++.......+.. .+...... .+.++...|++.||++||++
T Consensus 258 ~~~~~~~~~~~~~~~~i~~~~~------~~p~~~s~---~~~~li~~lL~~dP~~R~~~ 307 (396)
T 4dc2_A 258 SSDNPDQNTEDYLFQVILEKQI------RIPRSLSV---KAASVLKSFLNKDPKERLGC 307 (396)
T ss_dssp C------CCHHHHHHHHHHCCC------CCCTTSCH---HHHHHHHHHTCSCTTTSTTC
T ss_pred cccccchhhHHHHHHHHhcccc------CCCCcCCH---HHHHHHHHHhcCCHhHcCCC
Confidence 111 11111222222222211 11111122 34456669999999999995
|
| >3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.28 E-value=1.9e-12 Score=146.15 Aligned_cols=120 Identities=24% Similarity=0.307 Sum_probs=74.8
Q ss_pred HHHHHhcCCccccccCCCCce-eEEEeecCCCCccCceeee---cCCCCchhHHHHHHHHHHHHHh-cCCCCCCCchhhh
Q 038019 650 ELRSATKDFNRSNKLGEGGYG-PVYKVTANSYGYLAPEYAM---RGHLTEKADVFSFGVVALEIIS-GRASSDKSLDMEK 724 (866)
Q Consensus 650 ~~~~~~~dF~~~~~lg~g~~g-~vy~~~~gt~gY~aPE~~~---~~~~t~ksDVySfGvvLlEl~t-g~~p~~~~~~~~~ 724 (866)
.++.++.|||.++.+..+... ....+..||++|+|||.+. ...++.++|||||||+++||+| |+.|+.......
T Consensus 159 ~~~~kL~DFG~a~~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~~~t~~~DiwSlG~il~ellt~g~~pf~~~~~~~- 237 (432)
T 3p23_A 159 KIKAMISDFGLCKKLAVGRHSFSRRSGVPGTEGWIAPEMLSEDCKENPTYTVDIFSAGCVFYYVISEGSHPFGKSLQRQ- 237 (432)
T ss_dssp BCCEEECCTTEEECC------------CCSCTTSCCGGGTSCC---CCCTHHHHHHHHHHHHHHHTTSCBTTBSTTTHH-
T ss_pred ceeEEEecccceeeccCCCcceeeccccCCCcCccChhhhhcccccCCCcHHHHHHHHHHHHHHHcCCCCCcchhhHHH-
Confidence 345668999999988755321 1233457999999999987 5678899999999999999999 898885432211
Q ss_pred hcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 725 IYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 725 ~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
. ..... ........+ .......+.+++..|++.||++||++.||++
T Consensus 238 ---~---~~~~~-~~~~~~~~~-----~~~~~~~~~~li~~~L~~dP~~Rps~~evl~ 283 (432)
T 3p23_A 238 ---A---NILLG-ACSLDCLHP-----EKHEDVIARELIEKMIAMDPQKRPSAKHVLK 283 (432)
T ss_dssp ---H---HHHTT-CCCCTTSCT-----TCHHHHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred ---H---HHHhc-cCCccccCc-----cccccHHHHHHHHHHHhCCHhhCCCHHHHHh
Confidence 1 11111 101111111 1122233556777999999999999999983
|
| >2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ... | Back alignment and structure |
|---|
Probab=99.27 E-value=3e-12 Score=141.72 Aligned_cols=138 Identities=17% Similarity=0.135 Sum_probs=80.0
Q ss_pred CCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCCch
Q 038019 642 KPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSLD 721 (866)
Q Consensus 642 ~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~ 721 (866)
..|++...+...++.|||.++..+... ......||..|+|||.+.+..++.++|||||||+++||+||+.|+.....
T Consensus 155 p~NIl~~~~~~~kl~Dfg~a~~~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~ 231 (371)
T 2xrw_A 155 PSNIVVKSDCTLKILDFGLARTAGTSF---MMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIKGGVLFPGTDH 231 (371)
T ss_dssp GGGEEECTTSCEEECCCCC-------------------CTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSSCCSSH
T ss_pred HHHEEEcCCCCEEEEEeeccccccccc---ccCCceecCCccCHHHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCCCH
Confidence 346777667778899999998876542 23345789999999999999999999999999999999999999976433
Q ss_pred hhhhcHH----------------HHHHHHhhcCC------cccccC----CcccccCHHHHHHHHHHHHHccCCCCCCCC
Q 038019 722 MEKIYLL----------------EWAWNLHENNQ------SFGLVD----PTLTEFNDKEALRVIGVALLCTQTSPMMRP 775 (866)
Q Consensus 722 ~~~~~l~----------------~~~~~~~~~~~------~~~~~d----~~l~~~~~~~~~~~~~la~~C~~~~p~~RP 775 (866)
.+....+ ..+........ ..+.+. |...+........+.++..+|++.||++||
T Consensus 232 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~mL~~dP~~R~ 311 (371)
T 2xrw_A 232 IDQWNKVIEQLGTPCPEFMKKLQPTVRTYVENRPKYAGYSFEKLFPDVLFPADSEHNKLKASQARDLLSKMLVIDASKRI 311 (371)
T ss_dssp HHHHHHHHC-CCCCCHHHHTTSCHHHHHHHHSSCCCCCCCHHHHSCGGGSCCSSHHHHHHHHHHHHHHHHHSCSSGGGSC
T ss_pred HHHHHHHHHHhCCCCHHHHHHhhhHHHHHHhhCccccccchhhhcccccCcccccccccccHHHHHHHHHHCcCChhhCC
Confidence 2211000 00000000000 000000 000001112234567788899999999999
Q ss_pred CHHHHHH
Q 038019 776 PMSRVVA 782 (866)
Q Consensus 776 sm~~V~~ 782 (866)
|+.|+++
T Consensus 312 t~~e~l~ 318 (371)
T 2xrw_A 312 SVDEALQ 318 (371)
T ss_dssp CHHHHHH
T ss_pred CHHHHhC
Confidence 9999986
|
| >2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=1.4e-12 Score=143.53 Aligned_cols=116 Identities=16% Similarity=0.147 Sum_probs=81.0
Q ss_pred HHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCCchhhhhcHHHHH
Q 038019 652 RSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSLDMEKIYLLEWA 731 (866)
Q Consensus 652 ~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~~~~~~l~~~~ 731 (866)
..++.|||.+..+..+. .+....||++|+|||.+....++.++|||||||+++||++|+.|+......+ +...
T Consensus 157 ~vkl~DFG~a~~~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~~ll~g~~Pf~~~~~~~---~~~~- 229 (361)
T 2yab_A 157 HIKLIDFGLAHEIEDGV---EFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQE---TLAN- 229 (361)
T ss_dssp CEEECCCSSCEECCTTC---CCCCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCSSHHH---HHHH-
T ss_pred CEEEEecCCceEcCCCC---ccccCCCCccEECchHHcCCCCCccccHHHHHHHHHHHHhCCCCCCCCCHHH---HHHH-
Confidence 46789999998887643 2345579999999999998899999999999999999999999997643322 1111
Q ss_pred HHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 732 WNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 732 ~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
+..+.. ..++.......+ .+.++...|++.||++|||+.|+++
T Consensus 230 ---i~~~~~--~~~~~~~~~~s~---~~~~li~~~L~~dP~~R~t~~e~l~ 272 (361)
T 2yab_A 230 ---ITAVSY--DFDEEFFSQTSE---LAKDFIRKLLVKETRKRLTIQEALR 272 (361)
T ss_dssp ---HHTTCC--CCCHHHHTTSCH---HHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred ---HHhcCC--CCCchhccCCCH---HHHHHHHHHCCCChhHCcCHHHHhc
Confidence 111110 011111011112 3445666999999999999999875
|
| >4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=1.8e-12 Score=147.34 Aligned_cols=124 Identities=17% Similarity=0.168 Sum_probs=85.9
Q ss_pred CCCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCCc
Q 038019 641 SKPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSL 720 (866)
Q Consensus 641 ~~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~ 720 (866)
...|++...+...++.|||.++.....+ .......||++|+|||++.+..++.++|||||||+++||+||+.|+....
T Consensus 276 kp~NIll~~~~~~kl~DFG~a~~~~~~~--~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~ 353 (446)
T 4ejn_A 276 KLENLMLDKDGHIKITDFGLCKEGIKDG--ATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQD 353 (446)
T ss_dssp CGGGEEECSSSCEEECCCCCCCTTCC-------CCSSSCGGGCCHHHHHTSCCCTHHHHHHHHHHHHHHHHSSCSSCCSS
T ss_pred CHHHEEECCCCCEEEccCCCceeccCCC--cccccccCCccccCHhhcCCCCCCCccchhhhHHHHHHHhhCCCCCCCCC
Confidence 3347777777778899999998654332 33445689999999999999999999999999999999999999997543
Q ss_pred hhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCC-----CHHHHHH
Q 038019 721 DMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRP-----PMSRVVA 782 (866)
Q Consensus 721 ~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RP-----sm~~V~~ 782 (866)
... +...+. . +. ..+...... .+.++...|++.||++|| ++.|+++
T Consensus 354 ~~~---~~~~i~---~-~~------~~~p~~~~~---~~~~li~~~L~~dP~~R~~~~~~t~~ell~ 404 (446)
T 4ejn_A 354 HEK---LFELIL---M-EE------IRFPRTLGP---EAKSLLSGLLKKDPKQRLGGGSEDAKEIMQ 404 (446)
T ss_dssp HHH---HHHHHH---H-CC------CCCCTTSCH---HHHHHHHHHTCSSTTTSTTCSTTTHHHHHT
T ss_pred HHH---HHHHHH---h-CC------CCCCccCCH---HHHHHHHHHcccCHHHhCCCCCCCHHHHHh
Confidence 322 221111 1 11 111111122 344566699999999999 9998874
|
| >2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ... | Back alignment and structure |
|---|
Probab=99.27 E-value=1.3e-12 Score=138.12 Aligned_cols=127 Identities=16% Similarity=0.230 Sum_probs=86.6
Q ss_pred CcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCC-CchhHHHHHHHHHHHHHhcCCCCCCCch
Q 038019 643 PNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHL-TEKADVFSFGVVALEIISGRASSDKSLD 721 (866)
Q Consensus 643 ~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~-t~ksDVySfGvvLlEl~tg~~p~~~~~~ 721 (866)
.|++...+...++.|||.+..+..+..........||.+|+|||......+ +.++||||||++++||+||+.|++....
T Consensus 134 ~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~ 213 (276)
T 2yex_A 134 ENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSD 213 (276)
T ss_dssp GGEEECTTCCEEECCCTTCEECEETTEECCBCCCCSCGGGCCGGGGTCSSBCHHHHHHHHHHHHHHHHHHSSCCCSCSCT
T ss_pred HHEEEccCCCEEEeeCCCccccCCCcchhcccCCccccCccChHHHhcCCCCCCcchHHHHHHHHHHHHhCCCCCCCCch
Confidence 366666666678899999887765544334445678999999999887665 7899999999999999999999975432
Q ss_pred hhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 722 MEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 722 ~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
.. .....|.. ... .. +.....+ ..+.++...|++.+|++|||+.||++
T Consensus 214 ~~-~~~~~~~~-----~~~--~~-~~~~~~~----~~~~~li~~~l~~~p~~Rps~~~il~ 261 (276)
T 2yex_A 214 SC-QEYSDWKE-----KKT--YL-NPWKKID----SAPLALLHKILVENPSARITIPDIKK 261 (276)
T ss_dssp TS-HHHHHHHT-----TCT--TS-TTGGGSC----HHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred HH-HHHHHhhh-----ccc--cc-CchhhcC----HHHHHHHHHHCCCCchhCCCHHHHhc
Confidence 21 12222221 100 00 1111122 23445667999999999999999875
|
| >2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B | Back alignment and structure |
|---|
Probab=99.27 E-value=1e-12 Score=144.80 Aligned_cols=116 Identities=14% Similarity=0.188 Sum_probs=81.3
Q ss_pred HHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCCchhhhhcHHHHH
Q 038019 652 RSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSLDMEKIYLLEWA 731 (866)
Q Consensus 652 ~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~~~~~~l~~~~ 731 (866)
..++.|||.+..+.... .+.+..||++|+|||.+....++.++|||||||+++||+||+.|+...... .+...+
T Consensus 169 ~~kl~DfG~a~~~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~Pf~~~~~~---~~~~~i 242 (362)
T 2bdw_A 169 AVKLADFGLAIEVNDSE---AWHGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDEDQH---RLYAQI 242 (362)
T ss_dssp CEEECCCTTCBCCTTCC---SCCCSCSCTTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHH---HHHHHH
T ss_pred CEEEeecCcceEecCCc---ccccCCCCccccCHHHHccCCCCchhhHHHHHHHHHHHHHCCCCCCCCCHH---HHHHHH
Confidence 36789999998887543 234567999999999999889999999999999999999999998754322 122211
Q ss_pred HHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 732 WNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 732 ~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
..+.. ....+.....+ ..+.++...|++.||++||++.|+++
T Consensus 243 ----~~~~~-~~~~~~~~~~~----~~~~~li~~~L~~dP~~R~t~~e~l~ 284 (362)
T 2bdw_A 243 ----KAGAY-DYPSPEWDTVT----PEAKSLIDSMLTVNPKKRITADQALK 284 (362)
T ss_dssp ----HHTCC-CCCTTGGGGSC----HHHHHHHHHHSCSSGGGSCCHHHHTT
T ss_pred ----HhCCC-CCCcccccCCC----HHHHHHHHHHcCCChhhCcCHHHHhc
Confidence 11211 01111111122 23445666999999999999999875
|
| >1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ... | Back alignment and structure |
|---|
Probab=99.26 E-value=4.7e-12 Score=142.55 Aligned_cols=135 Identities=20% Similarity=0.176 Sum_probs=87.5
Q ss_pred CcccCHHH-HHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecC-CCCchhHHHHHHHHHHHHHhcCCCCCCCc
Q 038019 643 PNIFGYAE-LRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRG-HLTEKADVFSFGVVALEIISGRASSDKSL 720 (866)
Q Consensus 643 ~~~~~~~~-~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~-~~t~ksDVySfGvvLlEl~tg~~p~~~~~ 720 (866)
.|++...+ ...++.|||.++.+..+... ....||..|+|||++.+. .++.++|||||||+++||++|+.||....
T Consensus 185 ~NILl~~~~~~~kl~DFG~a~~~~~~~~~---~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~G~~pf~~~~ 261 (420)
T 1j1b_A 185 QNLLLDPDTAVLKLCDFGSAKQLVRGEPN---VSYICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGDS 261 (420)
T ss_dssp GGEEEETTTTEEEECCCTTCEECCTTCCC---CSCCSCTTSCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSS
T ss_pred hhEEEeCCCCeEEeccchhhhhcccCCCc---eeeeeCCCcCCHHHHcCCCCCCchhhhHHHHHHHHHHHhCCCCCCCCC
Confidence 36666544 34589999999987655432 234689999999998754 79999999999999999999999998654
Q ss_pred hhhhhcHHHHHHHH-------hh--cCCcccccCCcccccC------HHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 721 DMEKIYLLEWAWNL-------HE--NNQSFGLVDPTLTEFN------DKEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 721 ~~~~~~l~~~~~~~-------~~--~~~~~~~~d~~l~~~~------~~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
..+ .+.+.+... +. .....+...|.+...+ ......+.++..+|++.||++||++.|+++
T Consensus 262 ~~~--~l~~i~~~lg~p~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~Li~~~L~~dP~~R~t~~e~l~ 336 (420)
T 1j1b_A 262 GVD--QLVEIIKVLGTPTREQIREMNPNYTEFKFPQIKAHPWTKVFRPRTPPEAIALCSRLLEYTPTARLTPLEACA 336 (420)
T ss_dssp HHH--HHHHHHHHHCSCCHHHHHHHCSCCCCCCCCCCCCCCHHHHSCTTSCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred HHH--HHHHHHHHhCCCCHHHHHhhChhhhhhccCccCCCCHHHhcCCCCCHHHHHHHHHhccCChhHCCCHHHHhC
Confidence 322 122222110 00 0111111112221111 111235666777999999999999999975
|
| >3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 4dea_A* 4deb_A* ... | Back alignment and structure |
|---|
Probab=99.26 E-value=2.4e-12 Score=136.40 Aligned_cols=120 Identities=19% Similarity=0.234 Sum_probs=81.8
Q ss_pred CcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCCchh
Q 038019 643 PNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSLDM 722 (866)
Q Consensus 643 ~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~~ 722 (866)
.|++...+...++.|||.+....... .....||..|+|||.+.+..++.++||||||++++||++|+.|+......
T Consensus 138 ~Nili~~~~~~~l~Dfg~~~~~~~~~----~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~ 213 (279)
T 3fdn_A 138 ENLLLGSAGELKIADFGWSVHAPSSR----RTDLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQ 213 (279)
T ss_dssp GGEEECTTSCEEECSCCEESCC------------CCCCTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCTTCCSSHH
T ss_pred HhEEEcCCCCEEEEeccccccCCccc----ccccCCCCCccCHhHhccCCCCccchhHhHHHHHHHHHHCCCCCCCCcHH
Confidence 36666666677889999887665432 23447899999999999999999999999999999999999999754322
Q ss_pred hhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 723 EKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 723 ~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
+ ... ..... +........+ .+.++...|++.+|++||++.||++
T Consensus 214 ~---~~~----~~~~~------~~~~~~~~~~---~~~~li~~~l~~~p~~Rps~~e~l~ 257 (279)
T 3fdn_A 214 E---TYK----RISRV------EFTFPDFVTE---GARDLISRLLKHNPSQRPMLREVLE 257 (279)
T ss_dssp H---HHH----HHHHT------CCCCCTTSCH---HHHHHHHHHCCSSGGGSCCHHHHHH
T ss_pred H---HHH----HHHhC------CCCCCCcCCH---HHHHHHHHHhccChhhCCCHHHHhh
Confidence 2 111 11111 1111111222 3445666999999999999999986
|
| >2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.26 E-value=1.4e-12 Score=144.35 Aligned_cols=124 Identities=20% Similarity=0.178 Sum_probs=85.6
Q ss_pred cccC--HHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCCch
Q 038019 644 NIFG--YAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSLD 721 (866)
Q Consensus 644 ~~~~--~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~ 721 (866)
|++. ..+...++.|||.++.+..... +....||++|+|||++..+.++.++|||||||+++||+||+.|+.....
T Consensus 217 NIll~~~~~~~~kl~DFG~a~~~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~~ 293 (373)
T 2x4f_A 217 NILCVNRDAKQIKIIDFGLARRYKPREK---LKVNFGTPEFLAPEVVNYDFVSFPTDMWSVGVIAYMLLSGLSPFLGDND 293 (373)
T ss_dssp GEEEEETTTTEEEECCCSSCEECCTTCB---CCCCCSSCTTCCHHHHTTCBCCHHHHHHHHHHHHHHHHHSSCTTCCSSH
T ss_pred HEEEecCCCCcEEEEeCCCceecCCccc---cccccCCCcEeChhhccCCCCCcHHhHHHHHHHHHHHHhCCCCCCCCCH
Confidence 5554 3445678999999998875543 2334699999999999999999999999999999999999999976443
Q ss_pred hhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 722 MEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 722 ~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
.+ .. ....... . ...++.....+ ..+.++...|++.+|++||++.|+++
T Consensus 294 ~~---~~---~~i~~~~-~-~~~~~~~~~~~----~~~~~li~~~L~~dp~~Rps~~e~l~ 342 (373)
T 2x4f_A 294 AE---TL---NNILACR-W-DLEDEEFQDIS----EEAKEFISKLLIKEKSWRISASEALK 342 (373)
T ss_dssp HH---HH---HHHHHTC-C-CSCSGGGTTSC----HHHHHHHHTTSCSSGGGSCCHHHHHH
T ss_pred HH---HH---HHHHhcc-C-CCChhhhccCC----HHHHHHHHHHcCCChhhCCCHHHHhc
Confidence 22 11 1111111 0 01111111222 23455666999999999999999986
|
| >3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A | Back alignment and structure |
|---|
Probab=99.26 E-value=1.5e-12 Score=142.99 Aligned_cols=115 Identities=18% Similarity=0.194 Sum_probs=80.4
Q ss_pred HHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCCchhhhhcHHHHHH
Q 038019 653 SATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSLDMEKIYLLEWAW 732 (866)
Q Consensus 653 ~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~~~~~~l~~~~~ 732 (866)
.++.|||.+..++... .......||+.|+|||.+....++.++|||||||+++||+||+.|+..... .+...+
T Consensus 172 vkl~Dfg~a~~~~~~~--~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~----~~~~~i- 244 (351)
T 3c0i_A 172 VKLGGFGVAIQLGESG--LVAGGRVGTPHFMAPEVVKREPYGKPVDVWGCGVILFILLSGCLPFYGTKE----RLFEGI- 244 (351)
T ss_dssp EEECCCTTCEECCTTS--CBCCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCSSHH----HHHHHH-
T ss_pred EEEecCcceeEecCCC--eeecCCcCCcCccCHHHHcCCCCCchHhhHHHHHHHHHHHHCCCCCCCcHH----HHHHHH-
Confidence 5789999998887643 223445799999999999999999999999999999999999999975321 111111
Q ss_pred HHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 733 NLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 733 ~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
..+.. ..++...... ...+.++...|++.||++||++.|+++
T Consensus 245 ---~~~~~--~~~~~~~~~~---s~~~~~li~~~L~~dP~~R~s~~e~l~ 286 (351)
T 3c0i_A 245 ---IKGKY--KMNPRQWSHI---SESAKDLVRRMLMLDPAERITVYEALN 286 (351)
T ss_dssp ---HHTCC--CCCHHHHTTS---CHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred ---HcCCC--CCCccccccC---CHHHHHHHHHHCCCChhHCcCHHHHhc
Confidence 11111 0111110111 123455667999999999999999975
|
| >1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7 | Back alignment and structure |
|---|
Probab=99.26 E-value=2.4e-12 Score=143.05 Aligned_cols=124 Identities=20% Similarity=0.187 Sum_probs=85.9
Q ss_pred cccCH--HHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCCch
Q 038019 644 NIFGY--AELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSLD 721 (866)
Q Consensus 644 ~~~~~--~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~ 721 (866)
|++.. .....++.|||.++.+..... .....||.+|+|||.+....++.++|||||||+++||+||+.|+.....
T Consensus 179 NIll~~~~~~~vkL~DFG~a~~~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~Pf~~~~~ 255 (387)
T 1kob_A 179 NIMCETKKASSVKIIDFGLATKLNPDEI---VKVTTATAEFAAPEIVDREPVGFYTDMWAIGVLGYVLLSGLSPFAGEDD 255 (387)
T ss_dssp GEEESSTTCCCEEECCCTTCEECCTTSC---EEEECSSGGGCCHHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSCCSSH
T ss_pred HeEEecCCCCceEEEecccceecCCCcc---eeeeccCCCccCchhccCCCCCCcccEeeHhHHHHHHHhCCCCCCCCCH
Confidence 55443 223467899999998876543 3445799999999999999999999999999999999999999975432
Q ss_pred hhhhcHHHHHHHHhhcCCcccccCCcc-cccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 038019 722 MEKIYLLEWAWNLHENNQSFGLVDPTL-TEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAM 783 (866)
Q Consensus 722 ~~~~~l~~~~~~~~~~~~~~~~~d~~l-~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~ 783 (866)
.+ ....+.. ... ..++.. ...+ ..+.++...|++.||++|||+.|+++.
T Consensus 256 ~~---~~~~i~~----~~~--~~~~~~~~~~s----~~~~~li~~~L~~dP~~Rpt~~ell~h 305 (387)
T 1kob_A 256 LE---TLQNVKR----CDW--EFDEDAFSSVS----PEAKDFIKNLLQKEPRKRLTVHDALEH 305 (387)
T ss_dssp HH---HHHHHHH----CCC--CCCSSTTTTSC----HHHHHHHHTTSCSSGGGSCCHHHHHTS
T ss_pred HH---HHHHHHh----CCC--CCCccccccCC----HHHHHHHHHHcCCChhHCcCHHHHhhC
Confidence 21 1211111 110 111111 1222 234556669999999999999999863
|
| >3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=2e-12 Score=138.80 Aligned_cols=124 Identities=21% Similarity=0.312 Sum_probs=86.8
Q ss_pred CcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCCchh
Q 038019 643 PNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSLDM 722 (866)
Q Consensus 643 ~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~~ 722 (866)
.|++...+...++.|||.+..+...... .....||..|+|||......++.++||||||++++||+||+.|+......
T Consensus 148 ~Nil~~~~~~~kl~Dfg~~~~~~~~~~~--~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~ 225 (303)
T 3a7i_A 148 ANVLLSEHGEVKLADFGVAGQLTDTQIK--RNTFVGTPFWMAPEVIKQSAYDSKADIWSLGITAIELARGEPPHSELHPM 225 (303)
T ss_dssp GGEEECTTSCEEECCCTTCEECBTTBCC--BCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHH
T ss_pred heEEECCCCCEEEeecccceecCccccc--cCccCCCcCccCHHHHhcCCCCchhhhHHHHHHHHHHccCCCCCCCcCHH
Confidence 3666666667789999999877654321 12346899999999999999999999999999999999999998754332
Q ss_pred hhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 038019 723 EKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAM 783 (866)
Q Consensus 723 ~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~ 783 (866)
. ....+ ..+. .+.+...... .+.++...|++.+|++||++.||++.
T Consensus 226 ~---~~~~~----~~~~-----~~~~~~~~~~---~l~~li~~~l~~dp~~Rps~~~ll~~ 271 (303)
T 3a7i_A 226 K---VLFLI----PKNN-----PPTLEGNYSK---PLKEFVEACLNKEPSFRPTAKELLKH 271 (303)
T ss_dssp H---HHHHH----HHSC-----CCCCCSSCCH---HHHHHHHHHCCSSGGGSCCHHHHTTC
T ss_pred H---HHHHh----hcCC-----CCCCccccCH---HHHHHHHHHcCCChhhCcCHHHHhhC
Confidence 2 11111 1111 1122111122 34556679999999999999999763
|
| >3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II} | Back alignment and structure |
|---|
Probab=99.26 E-value=1.8e-12 Score=141.80 Aligned_cols=127 Identities=15% Similarity=0.093 Sum_probs=81.8
Q ss_pred cccCHHHH--HHHhcCCccccccCCCCcee--EEEeecCCCCccCceeeec--CCCCchhHHHHHHHHHHHHHhcCCCCC
Q 038019 644 NIFGYAEL--RSATKDFNRSNKLGEGGYGP--VYKVTANSYGYLAPEYAMR--GHLTEKADVFSFGVVALEIISGRASSD 717 (866)
Q Consensus 644 ~~~~~~~~--~~~~~dF~~~~~lg~g~~g~--vy~~~~gt~gY~aPE~~~~--~~~t~ksDVySfGvvLlEl~tg~~p~~ 717 (866)
|++...+- ..++.|||.+..+.....+. ......||+.|+|||.+.. ..++.++|||||||+++||+||+.|+.
T Consensus 198 NIll~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~ 277 (345)
T 3hko_A 198 NFLFSTNKSFEIKLVDFGLSKEFYKLNNGEYYGMTTKAGTPYFVAPEVLNTTNESYGPKCDAWSAGVLLHLLLMGAVPFP 277 (345)
T ss_dssp GEEESCSSSCCEEECCCTTCEEGGGTTCC--------CCCGGGCCHHHHTCSSSCCCTHHHHHHHHHHHHHHHHSSCSSC
T ss_pred hEEEecCCCceEEEeeccccccccccCccccccccccCCCccccCchhhccCCCCCCcHHHHHHHHHHHHHHHHCCCCCC
Confidence 55544332 56789999998775422222 2344579999999999865 788999999999999999999999997
Q ss_pred CCchhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 718 KSLDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 718 ~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
.....+. ......... ....+.....+ ..+.++...|++.+|++||++.|+++
T Consensus 278 ~~~~~~~------~~~~~~~~~--~~~~~~~~~~~----~~~~~li~~~l~~~p~~Rps~~~~l~ 330 (345)
T 3hko_A 278 GVNDADT------ISQVLNKKL--CFENPNYNVLS----PLARDLLSNLLNRNVDERFDAMRALQ 330 (345)
T ss_dssp CSSHHHH------HHHHHHCCC--CTTSGGGGGSC----HHHHHHHHHHSCSCTTTSCCHHHHHH
T ss_pred CCChHHH------HHHHHhccc--ccCCcccccCC----HHHHHHHHHHcCCChhHCCCHHHHhc
Confidence 5443221 111111110 11111111122 23445666999999999999999976
|
| >1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7 | Back alignment and structure |
|---|
Probab=99.26 E-value=1.6e-12 Score=142.41 Aligned_cols=138 Identities=14% Similarity=0.124 Sum_probs=89.3
Q ss_pred CCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecC-CCCchhHHHHHHHHHHHHHhcCCCCCCCc
Q 038019 642 KPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRG-HLTEKADVFSFGVVALEIISGRASSDKSL 720 (866)
Q Consensus 642 ~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~-~~t~ksDVySfGvvLlEl~tg~~p~~~~~ 720 (866)
..|++...+...++.|||.++.++... ..+....||..|+|||.+.+. .++.++|||||||+++||++|+.|+....
T Consensus 140 p~Nil~~~~~~~kl~Dfg~a~~~~~~~--~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~~~~~~~ 217 (346)
T 1ua2_A 140 PNNLLLDENGVLKLADFGLAKSFGSPN--RAYTHQVVTRWYRAPELLFGARMYGVGVDMWAVGCILAELLLRVPFLPGDS 217 (346)
T ss_dssp GGGEEECTTCCEEECCCGGGSTTTSCC--CCCCCSCCCCTTCCHHHHTTCSCCCHHHHHHHHHHHHHHHHHSSCSSCCSS
T ss_pred HHHEEEcCCCCEEEEecccceeccCCc--ccCCcccccccccCchHhhCCCCCCchhhhHhHHHHHHHHHHCCCCCCCCC
Confidence 346777667778899999998886432 233455789999999998654 58999999999999999999999987644
Q ss_pred hhhhhcHHHHHHHHhhc---CCccc------ccCC-cccccC-----HHHHHHHHHHHHHccCCCCCCCCCHHHHHHHH
Q 038019 721 DMEKIYLLEWAWNLHEN---NQSFG------LVDP-TLTEFN-----DKEALRVIGVALLCTQTSPMMRPPMSRVVAML 784 (866)
Q Consensus 721 ~~~~~~l~~~~~~~~~~---~~~~~------~~d~-~l~~~~-----~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L 784 (866)
..+ ....+...... ....+ .+.. .....+ ......+.++...|++.||++|||+.|+++.-
T Consensus 218 ~~~---~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~h~ 293 (346)
T 1ua2_A 218 DLD---QLTRIFETLGTPTEEQWPDMCSLPDYVTFKSFPGIPLHHIFSAAGDDLLDLIQGLFLFNPCARITATQALKMK 293 (346)
T ss_dssp HHH---HHHHHHHHHCCCCTTTSSSTTSSTTCCCCCCCCCCCHHHHCTTCCHHHHHHHHHHHCSSTTTSCCHHHHHTSG
T ss_pred HHH---HHHHHHHHcCCCChhhhhhhccCcccccccccCCCChHHhhccCCHHHHHHHHHHhccChhhCCCHHHHhcCh
Confidence 322 12222221110 00000 0000 000111 11123466677799999999999999998643
|
| >3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A | Back alignment and structure |
|---|
Probab=99.26 E-value=1.5e-12 Score=146.68 Aligned_cols=118 Identities=18% Similarity=0.223 Sum_probs=74.4
Q ss_pred HHHHhcCCccccccCCCCceeEEEeecCCCCccCceeee---cCCCCchhHHHHHHHHHHHHHhcCCCCCCCchhhhhcH
Q 038019 651 LRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAM---RGHLTEKADVFSFGVVALEIISGRASSDKSLDMEKIYL 727 (866)
Q Consensus 651 ~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~---~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~~~~~~l 727 (866)
...++.|||.++.++... ......||++|+|||++. ...++.++|||||||+++||+||+.|+...... ..+
T Consensus 279 ~~~kl~DFG~a~~~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~~~~DiwslG~il~~lltg~~pf~~~~~~--~~~ 353 (419)
T 3i6u_A 279 CLIKITDFGHSKILGETS---LMRTLCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICLSGYPPFSEHRTQ--VSL 353 (419)
T ss_dssp CCEEECCSSTTTSCC--------------CTTCCTTTTC----CTTHHHHHHHHHHHHHHHHHHSSCSSCCCSSS--CCH
T ss_pred ceEEEeecccceecCCCc---cccccCCCCCccCceeeecCCCCCCCchhhhHhHHHHHHHHHHCCCCCCCCcch--HHH
Confidence 346789999999887643 334567999999999875 467899999999999999999999999754322 122
Q ss_pred HHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 728 LEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 728 ~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
.+.+. .+... ..+.... .....+.++...|++.||++||++.|+++
T Consensus 354 ~~~i~----~~~~~--~~~~~~~---~~~~~~~~li~~~L~~dP~~Rps~~e~l~ 399 (419)
T 3i6u_A 354 KDQIT----SGKYN--FIPEVWA---EVSEKALDLVKKLLVVDPKARFTTEEALR 399 (419)
T ss_dssp HHHHH----TTCCC--CCHHHHT---TSCHHHHHHHHHHSCSSTTTSCCHHHHHH
T ss_pred HHHHh----cCCCC--CCchhhc---ccCHHHHHHHHHHccCChhHCcCHHHHhC
Confidence 22221 11110 0011000 11234556777999999999999999876
|
| >3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii} | Back alignment and structure |
|---|
Probab=99.25 E-value=1.6e-12 Score=138.19 Aligned_cols=115 Identities=18% Similarity=0.159 Sum_probs=73.5
Q ss_pred HHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCCchhhhhcHHHH
Q 038019 651 LRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSLDMEKIYLLEW 730 (866)
Q Consensus 651 ~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~~~~~~l~~~ 730 (866)
...++.|||.++.+..+. ......||..|+|||.+. +.++.++||||||++++||++|+.|+......+ +...
T Consensus 164 ~~~kl~Dfg~a~~~~~~~---~~~~~~~t~~y~aPE~~~-~~~~~~~Di~slG~il~~ll~g~~pf~~~~~~~---~~~~ 236 (285)
T 3is5_A 164 SPIKIIDFGLAELFKSDE---HSTNAAGTALYMAPEVFK-RDVTFKCDIWSAGVVMYFLLTGCLPFTGTSLEE---VQQK 236 (285)
T ss_dssp CCEEECCCCCCCC-------------CTTGGGCCHHHHT-TCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHHH---HHHH
T ss_pred CCEEEEeeecceecCCcc---cCcCcccccCcCChHHhc-cCCCcccCeehHHHHHHHHHhCCCCCCCCCHHH---HHhh
Confidence 446789999998876543 233457899999999875 678999999999999999999999997543222 1111
Q ss_pred HHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 731 AWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 731 ~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
... .. . .......... ..+.++...|++.||++||++.||++
T Consensus 237 ~~~---~~-~--~~~~~~~~~~----~~~~~li~~~L~~dP~~Rps~~e~l~ 278 (285)
T 3is5_A 237 ATY---KE-P--NYAVECRPLT----PQAVDLLKQMLTKDPERRPSAAQVLH 278 (285)
T ss_dssp HHH---CC-C--CCCC--CCCC----HHHHHHHHHHTCSCTTTSCCHHHHHT
T ss_pred hcc---CC-c--ccccccCcCC----HHHHHHHHHHccCChhhCcCHHHHhc
Confidence 111 00 0 0000001111 23445667999999999999999975
|
| >3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A | Back alignment and structure |
|---|
Probab=99.25 E-value=1.1e-12 Score=139.69 Aligned_cols=124 Identities=22% Similarity=0.240 Sum_probs=74.4
Q ss_pred CcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceee----ecCCCCchhHHHHHHHHHHHHHhcCCCCCC
Q 038019 643 PNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYA----MRGHLTEKADVFSFGVVALEIISGRASSDK 718 (866)
Q Consensus 643 ~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~----~~~~~t~ksDVySfGvvLlEl~tg~~p~~~ 718 (866)
.|++...+...++.|||.+..+..... .....||.+|+|||.+ ....++.++||||||++++||+||+.|++.
T Consensus 139 ~Nil~~~~~~~kl~Dfg~~~~~~~~~~---~~~~~~t~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~ 215 (290)
T 3fme_A 139 SNVLINALGQVKMCDFGISGYLVDDVA---KDIDAGCKPYMAPERINPELNQKGYSVKSDIWSLGITMIELAILRFPYDS 215 (290)
T ss_dssp GGCEECTTCCEEBCCC------------------CCCCCCSCHHHHSCCTTC--CCHHHHHHHHHHHHHHHHHTSCSSCC
T ss_pred HHEEECCCCCEEEeecCCccccccccc---ccccCCCccccChhhcChhhcCcCCCcHHHHHHHHHHHHHHHHCCCCccc
Confidence 366666666778999999988765432 2334689999999996 567899999999999999999999999975
Q ss_pred CchhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 719 SLDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 719 ~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
..... ..+ ....... .+.... ......+.+++..|++.+|++|||+.||++
T Consensus 216 ~~~~~-~~~----~~~~~~~------~~~~~~--~~~~~~~~~li~~~l~~~p~~Rpt~~e~l~ 266 (290)
T 3fme_A 216 WGTPF-QQL----KQVVEEP------SPQLPA--DKFSAEFVDFTSQCLKKNSKERPTYPELMQ 266 (290)
T ss_dssp CSCHH-HHH----HHHHHSC------CCCCCT--TTSCHHHHHHHHHHTCSSGGGSCCHHHHTT
T ss_pred cCchH-HHH----HHHhccC------CCCccc--ccCCHHHHHHHHHHhhcChhhCcCHHHHHh
Confidence 32211 111 1111111 111110 011223556677999999999999999975
|
| >3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=2e-12 Score=137.19 Aligned_cols=115 Identities=14% Similarity=0.187 Sum_probs=80.8
Q ss_pred HHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCCchhhhhcHHHHHH
Q 038019 653 SATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSLDMEKIYLLEWAW 732 (866)
Q Consensus 653 ~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~~~~~~l~~~~~ 732 (866)
.++.|||.+..++.... +....||.+|+|||.+.+..++.++||||||++++||++|+.|+....... ....
T Consensus 147 ~kl~Dfg~~~~~~~~~~---~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~---~~~~-- 218 (284)
T 3kk8_A 147 VKLADFGLAIEVNDSEA---WHGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDEDQHR---LYAQ-- 218 (284)
T ss_dssp EEECCCTTCEECCSSCB---CCCSCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHH---HHHH--
T ss_pred EEEeeceeeEEcccCcc---ccCCCCCcCCcCchhhcCCCCCcccchHHHHHHHHHHHHCCCCCCCCchhH---HHHH--
Confidence 57899999987765432 344579999999999999999999999999999999999999997543322 1111
Q ss_pred HHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 733 NLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 733 ~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
...+.. ....+.....+ ..+.++...|++.+|++||++.|+++
T Consensus 219 --~~~~~~-~~~~~~~~~~~----~~~~~li~~~l~~dp~~Rps~~~~l~ 261 (284)
T 3kk8_A 219 --IKAGAY-DYPSPEWDTVT----PEAKSLIDSMLTVNPKKRITADQALK 261 (284)
T ss_dssp --HHHTCC-CCCTTTTTTSC----HHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred --HHhccc-cCCchhhcccC----HHHHHHHHHHcccChhhCCCHHHHhc
Confidence 111111 11111111222 23455666999999999999999976
|
| >4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.25 E-value=1.1e-12 Score=146.55 Aligned_cols=139 Identities=11% Similarity=0.053 Sum_probs=90.7
Q ss_pred HHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeec--------CCCCchhHHHHHHHHHHHHHhcCCCCCCC
Q 038019 648 YAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMR--------GHLTEKADVFSFGVVALEIISGRASSDKS 719 (866)
Q Consensus 648 ~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~--------~~~t~ksDVySfGvvLlEl~tg~~p~~~~ 719 (866)
..+...++.|||.++.+..+.. +....||.+|+|||++.. ..++.++|||||||+++||+||+.||...
T Consensus 150 ~~~~~~kL~DFG~a~~~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~DiwSlG~il~el~tg~~Pf~~~ 226 (396)
T 4eut_A 150 DGQSVYKLTDFGAARELEDDEQ---FVSLYGTEEYLHPDMYERAVLRKDHQKKYGATVDLWSIGVTFYHAATGSLPFRPF 226 (396)
T ss_dssp TSCEEEEECCGGGCEECCCGGG---SSCSSSCCTTCCHHHHHHHCC--CHHHHHHHHHHHHHHHHHHHHHHHSSCSEECT
T ss_pred CCceeEEEecCCCceEccCCCc---cccccCCccccCHHHhhccccccccccCCCcHHHHHHHHHHHHHHHHCCCCCCCC
Confidence 4444567899999988765432 234568999999998764 67889999999999999999999998653
Q ss_pred chhh-hhcHHHHHHHHhhcCCccc---ccC------Ccc---cccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhc
Q 038019 720 LDME-KIYLLEWAWNLHENNQSFG---LVD------PTL---TEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLAG 786 (866)
Q Consensus 720 ~~~~-~~~l~~~~~~~~~~~~~~~---~~d------~~l---~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~~ 786 (866)
.... ......-+........... ..+ +.+ ..........+..+...|++.||++||++.|+++.++.
T Consensus 227 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~ll~~~L~~dP~~R~s~~e~l~~l~~ 306 (396)
T 4eut_A 227 EGPRRNKEVMYKIITGKPSGAISGVQKAENGPIDWSGDMPVSCSLSRGLQVLLTPVLANILEADQEKCWGFDQFFAETSD 306 (396)
T ss_dssp TCTTTCHHHHHHHHHSCCTTCCEEEECSTTCCEEEESSCCTTCSSCHHHHHHHHHHHHHHSCCCTTTSCCHHHHHHHHHH
T ss_pred CcccchHHHHHHHhcCCCcccchhheeccCCCcccCccCCcccccchHHHhhchHHHHHhhccChhhhccHHHHHHHHHH
Confidence 3221 1111111111111111100 000 011 12234455566678889999999999999999999886
Q ss_pred CcC
Q 038019 787 DIE 789 (866)
Q Consensus 787 ~~~ 789 (866)
...
T Consensus 307 il~ 309 (396)
T 4eut_A 307 ILH 309 (396)
T ss_dssp HHT
T ss_pred Hhh
Confidence 544
|
| >3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.25 E-value=1.5e-12 Score=142.82 Aligned_cols=119 Identities=18% Similarity=0.218 Sum_probs=79.6
Q ss_pred CCCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCCc
Q 038019 641 SKPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSL 720 (866)
Q Consensus 641 ~~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~ 720 (866)
...|++...+...++.|||.++.....+ .......||+.|||||.+....++.++||||+||+++||+||+.|+....
T Consensus 151 kp~NILl~~~g~ikL~DFG~a~~~~~~~--~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~~ 228 (353)
T 3txo_A 151 KLDNVLLDHEGHCKLADFGMCKEGICNG--VTTATFCGTPDYIAPEILQEMLYGPAVDWWAMGVLLYEMLCGHAPFEAEN 228 (353)
T ss_dssp CGGGEEECTTSCEEECCCTTCBCSCC-----------CCGGGCCHHHHHHHHCTTHHHHHHHHHHHHHHHHSSCSSCCSS
T ss_pred CHHHEEECCCCCEEEccccceeecccCC--ccccccCCCcCeEChhhcCCCCcCCccCCCcchHHHHHHHhCCCCCCCCC
Confidence 3347777777778899999988644332 23344579999999999999899999999999999999999999997644
Q ss_pred hhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCH
Q 038019 721 DMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPM 777 (866)
Q Consensus 721 ~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm 777 (866)
..+ +.+.+ . .+.. .......++ +.++...|++.+|++||++
T Consensus 229 ~~~---~~~~i---~-~~~~------~~p~~~~~~---~~~li~~lL~~dP~~R~~~ 269 (353)
T 3txo_A 229 EDD---LFEAI---L-NDEV------VYPTWLHED---ATGILKSFMTKNPTMRLGS 269 (353)
T ss_dssp HHH---HHHHH---H-HCCC------CCCTTSCHH---HHHHHHHHTCSSGGGSTTS
T ss_pred HHH---HHHHH---H-cCCC------CCCCCCCHH---HHHHHHHHhhhCHHHccCC
Confidence 322 22111 1 1111 111112223 4445669999999999998
|
| >2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A | Back alignment and structure |
|---|
Probab=99.25 E-value=2e-12 Score=141.29 Aligned_cols=120 Identities=14% Similarity=0.149 Sum_probs=80.5
Q ss_pred HHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCCchhhhhcHHHHH
Q 038019 652 RSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSLDMEKIYLLEWA 731 (866)
Q Consensus 652 ~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~~~~~~l~~~~ 731 (866)
..++.|||.++.+.... .......||..|+|||.+....++.++|||||||+++||++|+.|+..........+..
T Consensus 158 ~~kl~Dfg~a~~~~~~~--~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~~~~~~~-- 233 (342)
T 2qr7_A 158 SIRICDFGFAKQLRAEN--GLLMTPCYTANFVAPEVLERQGYDAACDIWSLGVLLYTMLTGYTPFANGPDDTPEEILA-- 233 (342)
T ss_dssp GEEECCCTTCEECBCTT--CCBCCSSCCSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSSCSSTTSCHHHHHH--
T ss_pred eEEEEECCCcccCcCCC--CceeccCCCccccCHHHhcCCCCCCccCeeeHhHHHHHHhcCCCCCCCCCcCCHHHHHH--
Confidence 46789999998776432 12234578999999999988889999999999999999999999997533222112222
Q ss_pred HHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 732 WNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 732 ~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
.+..+... +.+.......+ .+.++...|++.||++||++.||++
T Consensus 234 --~i~~~~~~--~~~~~~~~~s~---~~~~li~~~L~~dP~~R~t~~~il~ 277 (342)
T 2qr7_A 234 --RIGSGKFS--LSGGYWNSVSD---TAKDLVSKMLHVDPHQRLTAALVLR 277 (342)
T ss_dssp --HHHHCCCC--CCSTTTTTSCH---HHHHHHHHHTCSSTTTSCCHHHHTT
T ss_pred --HHccCCcc--cCccccccCCH---HHHHHHHHHCCCChhHCcCHHHHhc
Confidence 12222111 11111111122 3445566999999999999999875
|
| >2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.25 E-value=1.4e-12 Score=141.72 Aligned_cols=138 Identities=20% Similarity=0.169 Sum_probs=90.9
Q ss_pred CCcccCHHHHHHHhcCCccccccCCCCce-eEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCCc
Q 038019 642 KPNIFGYAELRSATKDFNRSNKLGEGGYG-PVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSL 720 (866)
Q Consensus 642 ~~~~~~~~~~~~~~~dF~~~~~lg~g~~g-~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~ 720 (866)
..|++...+...++.|||.+..+...... .......++..|+|||......++.++||||||++++||+||+.|+....
T Consensus 173 p~NIli~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~tg~~~~~~~~ 252 (326)
T 2w1i_A 173 TRNILVENENRVKIGDFGLTKVLPQDKEYYKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPP 252 (326)
T ss_dssp GGGEEEEETTEEEECCCTTCEECCSSCSEEECSSCCSCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHHTTCGGGSHH
T ss_pred cceEEEcCCCcEEEecCcchhhccccccccccccCCCCceeEECchhhcCCCCCchhhHHHHHHHHHHHHhcCCCCCCCH
Confidence 34677666667889999999888654321 11122356778999999998899999999999999999999998875321
Q ss_pred hh---------hhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhcC
Q 038019 721 DM---------EKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLAGD 787 (866)
Q Consensus 721 ~~---------~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~~~ 787 (866)
.. ...............+.. +... ......+.+++..|++.+|++||++.||++.|+..
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~---~~~~~~l~~li~~cl~~dP~~Rps~~el~~~L~~l 320 (326)
T 2w1i_A 253 AEFMRMIGNDKQGQMIVFHLIELLKNNGR-----LPRP---DGCPDEIYMIMTECWNNNVNQRPSFRDLALRVDQI 320 (326)
T ss_dssp HHHHHHHCTTCCTHHHHHHHHHHHHTTCC-----CCCC---TTCCHHHHHHHHHHSCSSGGGSCCHHHHHHHHHHH
T ss_pred HHHHHhhccccchhhhHHHHHHHhhcCCC-----CCCC---CcccHHHHHHHHHHcCCChhhCcCHHHHHHHHHHH
Confidence 10 000111111122221111 1111 11123455677799999999999999999999853
|
| >4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=6.6e-12 Score=141.48 Aligned_cols=131 Identities=19% Similarity=0.139 Sum_probs=86.0
Q ss_pred CCCCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeee-----cCCCCchhHHHHHHHHHHHHHhcCC
Q 038019 640 GSKPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAM-----RGHLTEKADVFSFGVVALEIISGRA 714 (866)
Q Consensus 640 ~~~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~-----~~~~t~ksDVySfGvvLlEl~tg~~ 714 (866)
....|++.+.+...++.|||.++.+...+. .......||++|||||++. .+.++.++|||||||+++||+||+.
T Consensus 201 LKp~NILl~~~g~vkL~DFGla~~~~~~~~-~~~~~~~GT~~Y~APE~l~~~~~~~~~~~~~~DvwSlGvil~elltG~~ 279 (437)
T 4aw2_A 201 IKPDNILMDMNGHIRLADFGSCLKLMEDGT-VQSSVAVGTPDYISPEILQAMEGGKGRYGPECDWWSLGVCMYEMLYGET 279 (437)
T ss_dssp CSGGGEEECTTSCEEECCCTTCEECCTTSC-EECCSCCSCGGGCCHHHHHHHHTSCCEECTHHHHHHHHHHHHHHHHSSC
T ss_pred cCHHHeeEcCCCCEEEcchhhhhhcccCCC-cccccccCCcCeeChHHHhhcccCCCCCCCcCeeHHHHHHHHHHHhCCC
Confidence 333477777778889999999988765442 2223357999999999987 5679999999999999999999999
Q ss_pred CCCCCchhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCC--CCCHHHHHH
Q 038019 715 SSDKSLDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMM--RPPMSRVVA 782 (866)
Q Consensus 715 p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~--RPsm~~V~~ 782 (866)
|+......+ ....+..... ...-|.......+++.. +...|++.+|++ ||++.||++
T Consensus 280 Pf~~~~~~~---~~~~i~~~~~-----~~~~p~~~~~~s~~~~d---Li~~lL~~~~~r~~r~~~~eil~ 338 (437)
T 4aw2_A 280 PFYAESLVE---TYGKIMNHKE-----RFQFPTQVTDVSENAKD---LIRRLICSREHRLGQNGIEDFKK 338 (437)
T ss_dssp TTCCSSHHH---HHHHHHTHHH-----HCCCCSSCCCSCHHHHH---HHHTTSSCGGGCTTTTTTHHHHT
T ss_pred CCCCCChhH---HHHhhhhccc-----cccCCcccccCCHHHHH---HHHHHhcccccccCCCCHHHHhC
Confidence 998644322 1111111000 01111111111233444 444677777777 999999875
|
| >3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.24 E-value=1.9e-12 Score=137.07 Aligned_cols=122 Identities=20% Similarity=0.227 Sum_probs=63.8
Q ss_pred CcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCCchh
Q 038019 643 PNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSLDM 722 (866)
Q Consensus 643 ~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~~ 722 (866)
.|++...+...++.|||.+..+..... ......||.+|+|||......++.++||||||++++||+||+.|+......
T Consensus 141 ~Nili~~~~~~kl~dfg~~~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~ 218 (278)
T 3cok_A 141 SNLLLTRNMNIKIADFGLATQLKMPHE--KHYTLCGTPNYISPEIATRSAHGLESDVWSLGCMFYTLLIGRPPFDTDTVK 218 (278)
T ss_dssp GGEEECTTCCEEECCCTTCEECC------------------------------CTHHHHHHHHHHHHHHSSCSSCCCSCC
T ss_pred HHEEEcCCCCEEEEeecceeeccCCCC--cceeccCCCCcCCcchhcCCCCCchhhHHHHHHHHHHHHhCCCCCCChhHH
Confidence 366666666778999999887764321 122346899999999999889999999999999999999999998754321
Q ss_pred hhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 723 EKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 723 ~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
+. . .. . ...+..+...... .+.+++..|++.||++||++.+|++
T Consensus 219 ~~---~---~~-~------~~~~~~~~~~~~~---~~~~li~~~l~~dp~~Rps~~~~l~ 262 (278)
T 3cok_A 219 NT---L---NK-V------VLADYEMPSFLSI---EAKDLIHQLLRRNPADRLSLSSVLD 262 (278)
T ss_dssp ------------C------CSSCCCCCTTSCH---HHHHHHHHHSCSSGGGSCCHHHHTT
T ss_pred HH---H---HH-H------hhcccCCccccCH---HHHHHHHHHcccCHhhCCCHHHHhc
Confidence 11 0 00 0 0011111111222 3455667999999999999999874
|
| >2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A | Back alignment and structure |
|---|
Probab=99.24 E-value=2.7e-12 Score=139.03 Aligned_cols=124 Identities=18% Similarity=0.162 Sum_probs=84.7
Q ss_pred cccCHHHH----HHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCC
Q 038019 644 NIFGYAEL----RSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKS 719 (866)
Q Consensus 644 ~~~~~~~~----~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~ 719 (866)
|++...+. ..++.|||.++.+..+.. +....||..|+|||......++.++||||||++++||+||+.|+...
T Consensus 145 NIl~~~~~~~~~~~kl~Dfg~~~~~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~ 221 (321)
T 2a2a_A 145 NIMLLDKNIPIPHIKLIDFGLAHEIEDGVE---FKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGD 221 (321)
T ss_dssp GEEESCTTSSSCCEEECCCTTCEECCTTCC---CCCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCS
T ss_pred HEEEecCCCCcCCEEEccCccceecCcccc---ccccCCCCCccCcccccCCCCCCccccHHHHHHHHHHHHCCCCCCCC
Confidence 55544443 467899999988876432 33456899999999999999999999999999999999999999754
Q ss_pred chhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 720 LDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 720 ~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
...+ ... . ...... ..++....... ..+.++...|++.||++|||+.|+++
T Consensus 222 ~~~~---~~~---~-i~~~~~--~~~~~~~~~~~---~~~~~li~~~l~~dp~~Rps~~e~l~ 272 (321)
T 2a2a_A 222 TKQE---TLA---N-ITSVSY--DFDEEFFSHTS---ELAKDFIRKLLVKETRKRLTIQEALR 272 (321)
T ss_dssp SHHH---HHH---H-HHTTCC--CCCHHHHTTCC---HHHHHHHHTTSCSSTTTSCCHHHHHH
T ss_pred CHHH---HHH---H-HHhccc--ccChhhhcccC---HHHHHHHHHHcCCChhhCcCHHHHhc
Confidence 3222 111 1 111100 01111111111 23455667999999999999999986
|
| >2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=2e-13 Score=144.73 Aligned_cols=126 Identities=15% Similarity=0.110 Sum_probs=86.1
Q ss_pred CcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCCchh
Q 038019 643 PNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSLDM 722 (866)
Q Consensus 643 ~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~~ 722 (866)
.|++...+...++.|||.+..++.... ......||..|+|||......++.++||||||++++||+||+.|+......
T Consensus 145 ~NIl~~~~~~~kl~dfg~~~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~ 222 (279)
T 2w5a_A 145 ANVFLDGKQNVKLGDFGLARILNHDTS--FAKTFVGTPYYMSPEQMNRMSYNEKSDIWSLGCLLYELCALMPPFTAFSQK 222 (279)
T ss_dssp GGEEECSSSCEEECCCCHHHHC---CH--HHHHHHSCCTTCCHHHHHCC-CCHHHHHHHHHHHHHHHHHSSCSSCCSSHH
T ss_pred hhEEEcCCCCEEEecCchheeeccccc--cccccCCCccccChHHhccCCCCchhhHHHHHHHHHHHHHCCCCCcccCHH
Confidence 366666666678899999887764321 112346899999999999889999999999999999999999998754322
Q ss_pred hhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHh
Q 038019 723 EKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLA 785 (866)
Q Consensus 723 ~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~ 785 (866)
.+.+. ...+... .+..... ..+.++...|++.+|++||++.||++.+.
T Consensus 223 ---~~~~~----i~~~~~~-----~~~~~~~---~~l~~li~~~l~~~p~~Rps~~~ll~~~~ 270 (279)
T 2w5a_A 223 ---ELAGK----IREGKFR-----RIPYRYS---DELNEIITRMLNLKDYHRPSVEEILENPL 270 (279)
T ss_dssp ---HHHHH----HHHTCCC-----CCCTTSC---HHHHHHHHHHTCSSGGGSCCHHHHHTSTT
T ss_pred ---HHHHH----Hhhcccc-----cCCcccC---HHHHHHHHHHcCCCcccCCCHHHHHhChh
Confidence 12221 2222211 1111112 23555666999999999999999998765
|
| >2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.24 E-value=4.9e-12 Score=135.79 Aligned_cols=125 Identities=13% Similarity=0.046 Sum_probs=87.0
Q ss_pred CcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCC--CCchhHHHHHHHHHHHHHhcCCCCCCCc
Q 038019 643 PNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGH--LTEKADVFSFGVVALEIISGRASSDKSL 720 (866)
Q Consensus 643 ~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~--~t~ksDVySfGvvLlEl~tg~~p~~~~~ 720 (866)
.|++...+...++.|||.+..+.............||..|+|||...... .+.++||||||++++||+||+.|+....
T Consensus 138 ~NIl~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~ 217 (305)
T 2wtk_C 138 GNLLLTTGGTLKISALGVAEALHPFAADDTCRTSQGSPAFQPPEIANGLDTFSGFKVDIWSAGVTLYNITTGLYPFEGDN 217 (305)
T ss_dssp GGEEECTTCCEEECCCTTCEECCTTCSSCEECCCCSCGGGCCHHHHTCCSCEESHHHHHHHHHHHHHHHHHSSCSCCCSS
T ss_pred ccEEEcCCCcEEeeccccccccCccccccccccCCCCCCCcChhhccCcccCCcchhhHHHHHHHHHHHHhCCCCCCCch
Confidence 36666666677899999998876544444555667999999999887543 4789999999999999999999997543
Q ss_pred hhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 038019 721 DMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAM 783 (866)
Q Consensus 721 ~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~ 783 (866)
..+ +. .....+.. .+..... ..+.++..+|++.||++||++.|+++.
T Consensus 218 ~~~---~~----~~i~~~~~------~~~~~~~---~~l~~li~~~l~~dp~~Rps~~~ll~~ 264 (305)
T 2wtk_C 218 IYK---LF----ENIGKGSY------AIPGDCG---PPLSDLLKGMLEYEPAKRFSIRQIRQH 264 (305)
T ss_dssp HHH---HH----HHHHHCCC------CCCSSSC---HHHHHHHHHHTCSSTTTSCCHHHHHHS
T ss_pred HHH---HH----HHHhcCCC------CCCCccC---HHHHHHHHHHccCChhhCCCHHHHhcC
Confidence 211 11 11111111 1111112 234456669999999999999999863
|
| >1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=1.3e-12 Score=142.73 Aligned_cols=122 Identities=19% Similarity=0.227 Sum_probs=85.1
Q ss_pred CCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCCch
Q 038019 642 KPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSLD 721 (866)
Q Consensus 642 ~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~ 721 (866)
..|++...+...++.|||.++....+.. ......||+.|+|||.+.+..++.++|||||||+++||+||+.|+.....
T Consensus 146 p~NIll~~~g~vkL~DFG~a~~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~ 223 (345)
T 1xjd_A 146 LDNILLDKDGHIKIADFGMCKENMLGDA--KTNTFCGTPDYIAPEILLGQKYNHSVDWWSFGVLLYEMLIGQSPFHGQDE 223 (345)
T ss_dssp GGGEEECTTSCEEECCCTTCBCCCCTTC--CBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSH
T ss_pred hhhEEECCCCCEEEeEChhhhhcccCCC--cccCCCCCcccCChhhhcCCCCCChhhhHHHHHHHHHHhcCCCCCCCCCH
Confidence 3477777777788999999986543321 12345799999999999999999999999999999999999999975432
Q ss_pred hhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHH-HHH
Q 038019 722 MEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMS-RVV 781 (866)
Q Consensus 722 ~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~-~V~ 781 (866)
.+ +...+ ..+ .+........+ +.++...|++.+|++||++. +|.
T Consensus 224 ~~---~~~~i----~~~------~~~~p~~~s~~---~~~li~~lL~~dp~~R~~~~~~i~ 268 (345)
T 1xjd_A 224 EE---LFHSI----RMD------NPFYPRWLEKE---AKDLLVKLFVREPEKRLGVRGDIR 268 (345)
T ss_dssp HH---HHHHH----HHC------CCCCCTTSCHH---HHHHHHHHSCSSGGGSBTTBSCGG
T ss_pred HH---HHHHH----HhC------CCCCCcccCHH---HHHHHHHHhcCCHhHcCCChHHHH
Confidence 21 22111 111 11121212223 44556699999999999997 554
|
| >2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.24 E-value=6.5e-12 Score=143.05 Aligned_cols=126 Identities=20% Similarity=0.280 Sum_probs=88.9
Q ss_pred CCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCC-CchhHHHHHHHHHHHHHhcCCCCCCCc
Q 038019 642 KPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHL-TEKADVFSFGVVALEIISGRASSDKSL 720 (866)
Q Consensus 642 ~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~-t~ksDVySfGvvLlEl~tg~~p~~~~~ 720 (866)
..|++...+...++.|||.++.+..+.+ .....||+.|+|||.+.+..+ +.++||||+||+++||+||+.|++...
T Consensus 144 p~NIll~~~~~vkL~DFG~a~~~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlGvil~elltG~~Pf~~~~ 220 (476)
T 2y94_A 144 PENVLLDAHMNAKIADFGLSNMMSDGEF---LRTSCGSPNYAAPEVISGRLYAGPEVDIWSSGVILYALLCGTLPFDDDH 220 (476)
T ss_dssp GGGEEECTTCCEEECCCSSCEECCTTCC---BCCCCSCSTTCCHHHHTTCCBCSHHHHHHHHHHHHHHHHHSSCSSCCSS
T ss_pred HHHEEEecCCCeEEEeccchhhcccccc---ccccCCCcCeEChhhccCCCCCCCcceehhhHHHHHHHhhCCCCCCCCC
Confidence 3467776777788999999998876653 334579999999999987765 789999999999999999999997543
Q ss_pred hhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHH--HHhc
Q 038019 721 DMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVA--MLAG 786 (866)
Q Consensus 721 ~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~--~L~~ 786 (866)
.. .+... ...+.. ........ .+.++...|++.||++|||+.||++ .+..
T Consensus 221 ~~---~~~~~----i~~~~~------~~p~~~s~---~~~~Li~~~L~~dP~~Rpt~~eil~hp~~~~ 272 (476)
T 2y94_A 221 VP---TLFKK----ICDGIF------YTPQYLNP---SVISLLKHMLQVDPMKRATIKDIREHEWFKQ 272 (476)
T ss_dssp SH---HHHHH----HHTTCC------CCCTTCCH---HHHHHHHHHTCSSTTTSCCHHHHHTCHHHHT
T ss_pred HH---HHHHH----HhcCCc------CCCccCCH---HHHHHHHHHcCCCchhCcCHHHHHhCHHhhh
Confidence 21 12211 111111 11111122 3455666999999999999999986 4443
|
| >3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.24 E-value=1.6e-12 Score=141.20 Aligned_cols=125 Identities=16% Similarity=0.214 Sum_probs=84.2
Q ss_pred CCCcccCHHHHHHHhcCCccccccCCCCcee----------EEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHH
Q 038019 641 SKPNIFGYAELRSATKDFNRSNKLGEGGYGP----------VYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEII 710 (866)
Q Consensus 641 ~~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~----------vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~ 710 (866)
...|++...+...++.|||.++.++...... ...+..||++|+|||.+.+..++.++|||||||+++||+
T Consensus 191 kp~NIll~~~~~~kL~DfG~a~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~ 270 (332)
T 3qd2_B 191 KPSNIFFTMDDVVKVGDFGLVTAMDQDEEEQTVLTPMPAYATHTGQVGTKLYMSPEQIHGNNYSHKVDIFSLGLILFELL 270 (332)
T ss_dssp CGGGEEECTTCCEEECCCTTCEECSCC--------------CCCSCC-CGGGSCHHHHHCCCCCTHHHHHHHHHHHHHHH
T ss_pred CcccEEEeCCCCEEEeecCcccccccchhhccccccccccccccccCCCcCccChHHhcCCCCcchhhHHHHHHHHHHHH
Confidence 3347777767778899999999887653211 122346999999999999999999999999999999999
Q ss_pred hcCCCCCCCchhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 711 SGRASSDKSLDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 711 tg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
||..|.. +...... ..... ............+.++...|++.||++||++.|+++
T Consensus 271 ~~~~~~~-----~~~~~~~----~~~~~--------~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~~l~ 325 (332)
T 3qd2_B 271 YSFSTQM-----ERVRIIT----DVRNL--------KFPLLFTQKYPQEHMMVQDMLSPSPTERPEATDIIE 325 (332)
T ss_dssp SCCCCHH-----HHHHHHH----HHHTT--------CCCHHHHHHCHHHHHHHHHHHCSSGGGSCCHHHHHH
T ss_pred HcCCChh-----HHHHHHH----Hhhcc--------CCCcccccCChhHHHHHHHHccCCCCcCCCHHHHhh
Confidence 9876532 1111111 11111 111111222234566778999999999999999985
|
| >3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=1.3e-12 Score=142.05 Aligned_cols=127 Identities=21% Similarity=0.203 Sum_probs=66.6
Q ss_pred CCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceee----ecCCCCchhHHHHHHHHHHHHHhcCCCCC
Q 038019 642 KPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYA----MRGHLTEKADVFSFGVVALEIISGRASSD 717 (866)
Q Consensus 642 ~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~----~~~~~t~ksDVySfGvvLlEl~tg~~p~~ 717 (866)
..|++...+...++.|||.++.+..... .....||.+|+|||.+ ....++.++||||||++++||+||+.|+.
T Consensus 154 p~NIll~~~~~~kl~Dfg~~~~~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~ 230 (327)
T 3aln_A 154 PSNILLDRSGNIKLCDFGISGQLVDSIA---KTRDAGCRPYMAPERIDPSASRQGYDVRSDVWSLGITLYELATGRFPYP 230 (327)
T ss_dssp GGGEEEETTTEEEECCCSSSCC---------------------------------CCSHHHHHHHHHHHHHHHHSCCCSS
T ss_pred HHHEEEcCCCCEEEccCCCceecccccc---cccCCCCccccCceeeccccCcCCCCchhhHHHHHHHHHHHHHCCCCCC
Confidence 3467776777788999999988765432 2233689999999998 56679999999999999999999999987
Q ss_pred CCchhhhhcHHHHHHHHhhcCCcccccCCcccc-cCHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 718 KSLDMEKIYLLEWAWNLHENNQSFGLVDPTLTE-FNDKEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 718 ~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~-~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
...... +.... ......+.+.. ........+.+++..|++.||++||++.||++
T Consensus 231 ~~~~~~-----~~~~~------~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~ 285 (327)
T 3aln_A 231 KWNSVF-----DQLTQ------VVKGDPPQLSNSEEREFSPSFINFVNLCLTKDESKRPKYKELLK 285 (327)
T ss_dssp CC------------CC------CCCSCCCCCCCCSSCCCCHHHHHHHHHHTCSSGGGSCCHHHHTT
T ss_pred CcchHH-----HHHHH------HhcCCCCCCCCcccccCCHHHHHHHHHHhhCChhhCcCHHHHHh
Confidence 432110 00000 00111111110 01111234556677999999999999999864
|
| >3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=2.8e-12 Score=139.47 Aligned_cols=126 Identities=13% Similarity=0.163 Sum_probs=75.5
Q ss_pred HHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecC-CCCchhHHHHHHHHHHHHHhcCCCCCCCchhhhhcHHHH
Q 038019 652 RSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRG-HLTEKADVFSFGVVALEIISGRASSDKSLDMEKIYLLEW 730 (866)
Q Consensus 652 ~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~-~~t~ksDVySfGvvLlEl~tg~~p~~~~~~~~~~~l~~~ 730 (866)
..++.|||.++.++... .......||.+|+|||.+.+. .++.++|||||||+++||+||+.|+......+. +..
T Consensus 175 ~~kl~Dfg~a~~~~~~~--~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~--~~~- 249 (329)
T 3gbz_A 175 VLKIGDFGLARAFGIPI--RQFTHEIITLWYRPPEILLGSRHYSTSVDIWSIACIWAEMLMKTPLFPGDSEIDQ--LFK- 249 (329)
T ss_dssp EEEECCTTHHHHHC-------------CCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHH--HHH-
T ss_pred eEEECcCCCccccCCcc--cccCCCcCCccccCHHHhcCCCCCCcHHHHHHHHHHHHHHHHCCCCcCCCCHHHH--HHH-
Confidence 36889999998876432 223445789999999998764 589999999999999999999999976543221 111
Q ss_pred HHHHhh---cCCcccc--------cCCcccccCHH------HHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 731 AWNLHE---NNQSFGL--------VDPTLTEFNDK------EALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 731 ~~~~~~---~~~~~~~--------~d~~l~~~~~~------~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
+..... ....... ..+........ ....+.++...|++.||++|||+.|+++
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~ 318 (329)
T 3gbz_A 250 IFEVLGLPDDTTWPGVTALPDWKQSFPKFRGKTLKRVLGALLDDEGLDLLTAMLEMDPVKRISAKNALE 318 (329)
T ss_dssp HHHHHCCCCTTTSTTGGGSTTCCTTCCCCCCCCHHHHHGGGSCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred HHHHhCCCchhhhhhhhhhhhhhhhhhhhccccHhhhcccccCHHHHHHHHHHccCChhhCCCHHHHhC
Confidence 111110 0000000 00000000000 1134556777999999999999999975
|
| >3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii} | Back alignment and structure |
|---|
Probab=99.24 E-value=2.9e-12 Score=146.14 Aligned_cols=76 Identities=20% Similarity=0.186 Sum_probs=55.0
Q ss_pred ccCCCCCcccCHHHHHHHhcCCccccccCCCCce-------------------------eEEEeecCCCCccCceee-ec
Q 038019 637 VGIGSKPNIFGYAELRSATKDFNRSNKLGEGGYG-------------------------PVYKVTANSYGYLAPEYA-MR 690 (866)
Q Consensus 637 ~~~~~~~~~~~~~~~~~~~~dF~~~~~lg~g~~g-------------------------~vy~~~~gt~gY~aPE~~-~~ 690 (866)
|......|++...+...++.|||+++.++....+ ....+.+||..|+|||++ ..
T Consensus 179 HrDlKp~NILl~~~~~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~ 258 (458)
T 3rp9_A 179 HRDLKPANCLVNQDCSVKVCDFGLARTVDYPENGNSQLPISPREDDMNLVTFPHTKNLKRQLTGHVVTRWYRAPELILLQ 258 (458)
T ss_dssp CCCCCGGGEEECTTCCEEECCCTTCBCTTSCTTCCCCCC---------------------------CCCTTCCHHHHTTC
T ss_pred CCCCChhhEEECCCCCEeecccccchhccCccccccccccCccccccccccccccccccccccCCcccccccChHHhhCC
Confidence 3333344777777778899999999988643211 234456889999999976 46
Q ss_pred CCCCchhHHHHHHHHHHHHHhc
Q 038019 691 GHLTEKADVFSFGVVALEIISG 712 (866)
Q Consensus 691 ~~~t~ksDVySfGvvLlEl~tg 712 (866)
..++.++|||||||+++||+||
T Consensus 259 ~~~~~~~DiwSlG~il~elltg 280 (458)
T 3rp9_A 259 ENYTEAIDVWSIGCIFAELLNM 280 (458)
T ss_dssp CCCCTHHHHHHHHHHHHHHHTT
T ss_pred CCCCcHhHHHHHHHHHHHHHHh
Confidence 6799999999999999999994
|
| >4exu_A Mitogen-activated protein kinase 13; P38 kinase, transferase; 1.70A {Homo sapiens} PDB: 4eyj_A* 4eym_A* 3coi_A | Back alignment and structure |
|---|
Probab=99.23 E-value=1.7e-12 Score=143.75 Aligned_cols=134 Identities=12% Similarity=0.113 Sum_probs=83.0
Q ss_pred CCCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeec-CCCCchhHHHHHHHHHHHHHhcCCCCCCC
Q 038019 641 SKPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMR-GHLTEKADVFSFGVVALEIISGRASSDKS 719 (866)
Q Consensus 641 ~~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~-~~~t~ksDVySfGvvLlEl~tg~~p~~~~ 719 (866)
...|++...+...++.|||.++..+.. ..+..||.+|+|||.+.+ ..++.++|||||||+++||+||+.|+...
T Consensus 171 kp~NIll~~~~~~kL~Dfg~a~~~~~~-----~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~ 245 (371)
T 4exu_A 171 KPGNLAVNEDCELKILDFGLARHADAE-----MTGYVVTRWYRAPEVILSWMHYNQTVDIWSVGCIMAEMLTGKTLFKGK 245 (371)
T ss_dssp CGGGEEECTTCCEEECSTTCC-------------CTTCCCTTSCHHHHSCCSCCCTTHHHHHHHHHHHHHHHSSCSCCCS
T ss_pred CHHHeEECCCCCEEEEecCcccccccC-----cCCcccCccccCHHHhcCCCCCCcHHhHHHHHHHHHHHHhCCCCCCCC
Confidence 334777777777889999999876543 334578999999999876 78999999999999999999999999864
Q ss_pred chhhhhcHHHHHHHHhhcC--C----------------cccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHH
Q 038019 720 LDMEKIYLLEWAWNLHENN--Q----------------SFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVV 781 (866)
Q Consensus 720 ~~~~~~~l~~~~~~~~~~~--~----------------~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~ 781 (866)
...+. ...+....... . ...................+.++...|++.||++|||+.|++
T Consensus 246 ~~~~~---~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell 322 (371)
T 4exu_A 246 DYLDQ---LTQILKVTGVPGTEFVQKLNDKAAKSYIQSLPQTPRKDFTQLFPRASPQAADLLEKMLELDVDKRLTAAQAL 322 (371)
T ss_dssp SHHHH---HHHHHHHHCCCCHHHHTTCSCHHHHHHHHHSCCCCCCCHHHHSTTSCHHHHHHHHHHSCSCTTTSCCHHHHH
T ss_pred ChHHH---HHHHHHHhCCCcHHHHHHhhhhhhhhhhhccCCCcchhHHHhccccChHHHHHHHHHCCCChhhcCCHHHHh
Confidence 43221 11111110000 0 000000000000111123456677799999999999999987
Q ss_pred H
Q 038019 782 A 782 (866)
Q Consensus 782 ~ 782 (866)
+
T Consensus 323 ~ 323 (371)
T 4exu_A 323 T 323 (371)
T ss_dssp T
T ss_pred c
Confidence 5
|
| >2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=1.7e-12 Score=142.57 Aligned_cols=138 Identities=14% Similarity=0.098 Sum_probs=85.0
Q ss_pred CCcccCHHHHHHHhcCCccccccCCCCcee--------EEEeecCCCCccCceeeec-CCCCchhHHHHHHHHHHHHHhc
Q 038019 642 KPNIFGYAELRSATKDFNRSNKLGEGGYGP--------VYKVTANSYGYLAPEYAMR-GHLTEKADVFSFGVVALEIISG 712 (866)
Q Consensus 642 ~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~--------vy~~~~gt~gY~aPE~~~~-~~~t~ksDVySfGvvLlEl~tg 712 (866)
..|++...+...++.|||.++.+....... ......||..|+|||.+.. ..++.++|||||||+++||++|
T Consensus 140 p~Nil~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g 219 (353)
T 2b9h_A 140 PSNLLINSNCDLKVCDFGLARIIDESAADNSEPTGQQSGMVEFVATRWYRAPEVMLTSAKYSRAMDVWSCGCILAELFLR 219 (353)
T ss_dssp GGGEEECTTCCEEECCCTTCEECC----------------CCCCCCGGGCCHHHHHSCCCCCHHHHHHHHHHHHHHHHHS
T ss_pred HHHeEEcCCCcEEEEecccccccccccccccCccccccchhhccccccccCCeeeccCCCccchhhHHHHHHHHHHHHhC
Confidence 346776666677899999998876432211 1123468999999998754 7899999999999999999999
Q ss_pred CCCCCCCchhhhhcHHHHHHHHhhcC----CcccccC---------------CcccccCHHHHHHHHHHHHHccCCCCCC
Q 038019 713 RASSDKSLDMEKIYLLEWAWNLHENN----QSFGLVD---------------PTLTEFNDKEALRVIGVALLCTQTSPMM 773 (866)
Q Consensus 713 ~~p~~~~~~~~~~~l~~~~~~~~~~~----~~~~~~d---------------~~l~~~~~~~~~~~~~la~~C~~~~p~~ 773 (866)
+.|+......+. ...+....... ....+.+ ..+..........+.++..+|++.||++
T Consensus 220 ~~pf~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~ 296 (353)
T 2b9h_A 220 RPIFPGRDYRHQ---LLLIFGIIGTPHSDNDLRCIESPRAREYIKSLPMYPAAPLEKMFPRVNPKGIDLLQRMLVFDPAK 296 (353)
T ss_dssp SCSCCCSSHHHH---HHHHHHHHCCCCSTTTTTTCCCHHHHHHHHTSCCCCCCCHHHHSTTSCHHHHHHHHHHSCSSGGG
T ss_pred CCCCCCCCcHHH---HHHHHHHhCCCchhccccccccchhhHHhhcccCCCCcchhhhcccCCHHHHHHHHHhcCcCccc
Confidence 999976443221 11111111100 0000000 0000000111234556777999999999
Q ss_pred CCCHHHHHH
Q 038019 774 RPPMSRVVA 782 (866)
Q Consensus 774 RPsm~~V~~ 782 (866)
|||+.|+++
T Consensus 297 Rpt~~ell~ 305 (353)
T 2b9h_A 297 RITAKEALE 305 (353)
T ss_dssp SCCHHHHHT
T ss_pred CCCHHHHhc
Confidence 999999976
|
| >1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7 | Back alignment and structure |
|---|
Probab=99.23 E-value=3e-12 Score=141.47 Aligned_cols=134 Identities=14% Similarity=0.127 Sum_probs=87.5
Q ss_pred CCCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeec-CCCCchhHHHHHHHHHHHHHhcCCCCCCC
Q 038019 641 SKPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMR-GHLTEKADVFSFGVVALEIISGRASSDKS 719 (866)
Q Consensus 641 ~~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~-~~~t~ksDVySfGvvLlEl~tg~~p~~~~ 719 (866)
...|++...+...++.|||.++..+... .+..||..|+|||.+.+ ..++.++||||+||+++||+||+.|+...
T Consensus 155 kp~NIll~~~~~~kl~Dfg~a~~~~~~~-----~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~ 229 (367)
T 1cm8_A 155 KPGNLAVNEDCELKILDFGLARQADSEM-----TGYVVTRWYRAPEVILNWMRYTQTVDIWSVGCIMAEMITGKTLFKGS 229 (367)
T ss_dssp CGGGEEECTTCCEEECCCTTCEECCSSC-----CSSCSCGGGCCTHHHHTTTCCCTTHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred CHHHEEEcCCCCEEEEeeeccccccccc-----CcCcCCCCcCCHHHHhCCCCCChhhhHHHHHHHHHHHHhCCCCCCCC
Confidence 3346777777778899999998876432 23468999999999876 78999999999999999999999999764
Q ss_pred chhhhhcHHHHHHHHhhc-----------C-------CcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHH
Q 038019 720 LDMEKIYLLEWAWNLHEN-----------N-------QSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVV 781 (866)
Q Consensus 720 ~~~~~~~l~~~~~~~~~~-----------~-------~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~ 781 (866)
...+. ...+...... . ...+.-...+..........+.++..+|++.||++|||+.|++
T Consensus 230 ~~~~~---l~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~mL~~dP~~R~t~~e~l 306 (367)
T 1cm8_A 230 DHLDQ---LKEIMKVTGTPPAEFVQRLQSDEAKNYMKGLPELEKKDFASILTNASPLAVNLLEKMLVLDAEQRVTAGEAL 306 (367)
T ss_dssp SHHHH---HHHHHHHHCCCCHHHHHTCSCHHHHHHHHHSCCCCCCCGGGTCTTCCHHHHHHHHHHSCSSTTTSCCHHHHH
T ss_pred CHHHH---HHHHHHhcCCCCHHHHHHhhhHHHHHHHHhCCCCCCCCHHHHCCCCCHHHHHHHHHHccCChhHCCCHHHHh
Confidence 43221 1111110000 0 0000001111111111123455666799999999999999998
Q ss_pred H
Q 038019 782 A 782 (866)
Q Consensus 782 ~ 782 (866)
+
T Consensus 307 ~ 307 (367)
T 1cm8_A 307 A 307 (367)
T ss_dssp H
T ss_pred c
Confidence 6
|
| >4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis} | Back alignment and structure |
|---|
Probab=99.23 E-value=2.6e-12 Score=143.40 Aligned_cols=135 Identities=19% Similarity=0.185 Sum_probs=87.0
Q ss_pred CcccCH-HHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecC-CCCchhHHHHHHHHHHHHHhcCCCCCCCc
Q 038019 643 PNIFGY-AELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRG-HLTEKADVFSFGVVALEIISGRASSDKSL 720 (866)
Q Consensus 643 ~~~~~~-~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~-~~t~ksDVySfGvvLlEl~tg~~p~~~~~ 720 (866)
.|++.. .+...++.|||.++.+..+... ....||..|+|||.+.+. .++.++|||||||+++||++|+.|+....
T Consensus 170 ~Nill~~~~~~~kL~DFG~a~~~~~~~~~---~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~~ 246 (394)
T 4e7w_A 170 QNLLLDPPSGVLKLIDFGSAKILIAGEPN---VSYICSRYYRAPELIFGATNYTTNIDIWSTGCVMAELMQGQPLFPGES 246 (394)
T ss_dssp GGEEEETTTTEEEECCCTTCEECCTTCCC---CSSCSCGGGCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSS
T ss_pred HHEEEcCCCCcEEEeeCCCcccccCCCCC---cccccCcCccCHHHHcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCC
Confidence 366665 5667789999999887655432 234679999999988654 59999999999999999999999998654
Q ss_pred hhhhhcHHHHHHHH-------hh--cCCcccccCCcccc------cCHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 721 DMEKIYLLEWAWNL-------HE--NNQSFGLVDPTLTE------FNDKEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 721 ~~~~~~l~~~~~~~-------~~--~~~~~~~~d~~l~~------~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
..+. +.+.+... +. .....+..-|.... +.......+.++..+|++.||++|||+.|+++
T Consensus 247 ~~~~--l~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~ 321 (394)
T 4e7w_A 247 GIDQ--LVEIIKVLGTPSREQIKTMNPNYMEHKFPQIRPHPFSKVFRPRTPPDAIDLISRLLEYTPSARLTAIEALC 321 (394)
T ss_dssp HHHH--HHHHHHHHCCCCHHHHHHHCGGGSSSCCCCCCCCCHHHHSCTTCCHHHHHHHHHHCCSSGGGSCCHHHHHT
T ss_pred HHHH--HHHHHHHhCCCCHHHHHhhChhhhhhccccccCCcHHHhccccCCHHHHHHHHHHhCCChhhCCCHHHHhc
Confidence 3322 22111110 00 00000000011100 11111234666777999999999999999985
|
| >2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ... | Back alignment and structure |
|---|
Probab=99.23 E-value=1.1e-12 Score=144.87 Aligned_cols=133 Identities=14% Similarity=0.160 Sum_probs=76.9
Q ss_pred CCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeec-CCCCchhHHHHHHHHHHHHHhcCCCCCCCc
Q 038019 642 KPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMR-GHLTEKADVFSFGVVALEIISGRASSDKSL 720 (866)
Q Consensus 642 ~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~-~~~t~ksDVySfGvvLlEl~tg~~p~~~~~ 720 (866)
..|++...+...++.|||.++..+.. ..+..||..|+|||.+.+ ..++.++|||||||+++||+||+.|+....
T Consensus 160 p~NIll~~~~~~kL~DFG~a~~~~~~-----~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~ 234 (367)
T 2fst_X 160 PSNLAVNEDCELKILDFGLARHTADE-----MTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTD 234 (367)
T ss_dssp GGGEEECTTCCEEECC--------------------CCCTTCCHHHHTTCCSCCTTHHHHHHHHHHHHHHHSSCSCCCSS
T ss_pred HhhEEECCCCCEEEeecccccccccc-----CCCcCcCcCccChHHHcCCcCCCchhhHHHHHHHHHHHHhCCCCCCCCC
Confidence 34677766777889999999876543 234578999999999876 689999999999999999999999997644
Q ss_pred hhhhhcHHHHHHHHhhcC---CcccccC----------CcccccCH-----HHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 721 DMEKIYLLEWAWNLHENN---QSFGLVD----------PTLTEFND-----KEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 721 ~~~~~~l~~~~~~~~~~~---~~~~~~d----------~~l~~~~~-----~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
..+. ...+....... ....+.. +....... .....+.++..+|++.||++|||+.|+++
T Consensus 235 ~~~~---l~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~R~t~~e~L~ 311 (367)
T 2fst_X 235 HIDQ---LKLILRLVGTPGAELLKKISSESARNYIQSLTQMPKMNFANVFIGANPLAVDLLEKMLVLDSDKRITAAQALA 311 (367)
T ss_dssp HHHH---HHHHHHHHCSCCHHHHTTCCCHHHHHHHHTSCCCCCCCHHHHTTTCCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred HHHH---HHHHHHHhCCCCHHHHHHhhhHHHHHHHhccCCCCCCCHHHHCCCCCHHHHHHHHHhCCCCcccCcCHHHHhc
Confidence 3222 11111111000 0000000 00000000 01123556777999999999999999975
|
| >1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} PDB: 3fpq_A | Back alignment and structure |
|---|
Probab=99.23 E-value=6.2e-12 Score=133.99 Aligned_cols=122 Identities=15% Similarity=0.159 Sum_probs=83.4
Q ss_pred CcccCH-HHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCCch
Q 038019 643 PNIFGY-AELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSLD 721 (866)
Q Consensus 643 ~~~~~~-~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~ 721 (866)
.|++.. .+...++.|||.+...+... .....||.+|+|||.+. +.++.++||||||++++||+||+.|+.....
T Consensus 160 ~Nil~~~~~~~~kl~Dfg~~~~~~~~~----~~~~~~t~~y~aPE~~~-~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~ 234 (290)
T 1t4h_A 160 DNIFITGPTGSVKIGDLGLATLKRASF----AKAVIGTPEFMAPEMYE-EKYDESVDVYAFGMCMLEMATSEYPYSECQN 234 (290)
T ss_dssp GGEEESSTTSCEEECCTTGGGGCCTTS----BEESCSSCCCCCGGGGG-TCCCTHHHHHHHHHHHHHHHHSSCTTTTCSS
T ss_pred HHEEEECCCCCEEEeeCCCcccccccc----cccccCCcCcCCHHHHh-ccCCCcchHHHHHHHHHHHHhCCCCCCCcCc
Confidence 366554 55677899999998766543 23456899999999775 6699999999999999999999999975332
Q ss_pred hhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 722 MEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 722 ~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
.. ..... ...+.. .+....... ..+.+++..|++.+|++||++.||++
T Consensus 235 ~~-----~~~~~-~~~~~~----~~~~~~~~~---~~l~~li~~~l~~dp~~Rps~~ell~ 282 (290)
T 1t4h_A 235 AA-----QIYRR-VTSGVK----PASFDKVAI---PEVKEIIEGCIRQNKDERYSIKDLLN 282 (290)
T ss_dssp HH-----HHHHH-HTTTCC----CGGGGGCCC---HHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred HH-----HHHHH-HhccCC----ccccCCCCC---HHHHHHHHHHccCChhhCCCHHHHhh
Confidence 21 11111 111111 111111111 23556677999999999999999975
|
| >3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.23 E-value=5.4e-12 Score=141.45 Aligned_cols=77 Identities=17% Similarity=0.188 Sum_probs=53.4
Q ss_pred CcccC----HHHHHHHhcCCccccccCCCCc-eeEEEeecCCCCccCceeeec-CCCCchhHHHHHHHHHHHHHhcCCCC
Q 038019 643 PNIFG----YAELRSATKDFNRSNKLGEGGY-GPVYKVTANSYGYLAPEYAMR-GHLTEKADVFSFGVVALEIISGRASS 716 (866)
Q Consensus 643 ~~~~~----~~~~~~~~~dF~~~~~lg~g~~-g~vy~~~~gt~gY~aPE~~~~-~~~t~ksDVySfGvvLlEl~tg~~p~ 716 (866)
.|++. ..+...++.|||.++.++.... ........||+.|+|||.+.+ ..++.++|||||||+++||+||+.|+
T Consensus 157 ~NIll~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~pf 236 (405)
T 3rgf_A 157 ANILVMGEGPERGRVKIADMGFARLFNSPLKPLADLDPVVVTFWYRAPELLLGARHYTKAIDIWAIGCIFAELLTSEPIF 236 (405)
T ss_dssp GGEEECCSSTTTTCEEECCTTCCC----------------CCCTTCCHHHHTTCCSCCHHHHHHHHHHHHHHHHHSSCTT
T ss_pred HHeEEecCCCCCCcEEEEECCCceecCCCCcccccCCCceecCcccCchhhcCCCcccchhhhHHHHHHHHHHHhCCCCC
Confidence 36665 4556778999999998764321 122344579999999999876 45999999999999999999999999
Q ss_pred CCC
Q 038019 717 DKS 719 (866)
Q Consensus 717 ~~~ 719 (866)
...
T Consensus 237 ~~~ 239 (405)
T 3rgf_A 237 HCR 239 (405)
T ss_dssp CCC
T ss_pred CCc
Confidence 643
|
| >4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=1.6e-12 Score=138.48 Aligned_cols=115 Identities=21% Similarity=0.247 Sum_probs=76.4
Q ss_pred HHhcCCccccccCCCCceeEEEeecCCCCccCceeeec-CCCCchhHHHHHHHHHHHHHhcCCCCCCCchhhhhcHHHHH
Q 038019 653 SATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMR-GHLTEKADVFSFGVVALEIISGRASSDKSLDMEKIYLLEWA 731 (866)
Q Consensus 653 ~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~-~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~~~~~~l~~~~ 731 (866)
.++.|||.+..+.... ...||.+|+|||.+.. ..++.++|||||||+++||+||+.|........ ....
T Consensus 160 ~kl~Dfg~~~~~~~~~------~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~~~~~~~~~~--~~~~-- 229 (289)
T 4fvq_A 160 IKLSDPGISITVLPKD------ILQERIPWVPPECIENPKNLNLATDKWSFGTTLWEICSGGDKPLSALDSQ--RKLQ-- 229 (289)
T ss_dssp EEECCCCSCTTTSCHH------HHHHTTTTSCHHHHHCGGGCCHHHHHHHHHHHHHHHHTTTCCTTTTSCHH--HHHH--
T ss_pred eeeccCcccccccCcc------ccCCcCcccCHHHhCCCCCCCchhHHHHHHHHHHHHHcCCCCCccccchH--HHHH--
Confidence 5678888876654322 1357899999999887 789999999999999999999655543222111 1111
Q ss_pred HHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhcCcC
Q 038019 732 WNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLAGDIE 789 (866)
Q Consensus 732 ~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~~~~~ 789 (866)
..... +.+.... ...+.+++..|++.||++|||+.||++.|+....
T Consensus 230 --~~~~~-------~~~~~~~---~~~l~~li~~~l~~dp~~Rps~~~ll~~l~~l~~ 275 (289)
T 4fvq_A 230 --FYEDR-------HQLPAPK---AAELANLINNCMDYEPDHRPSFRAIIRDLNSLFT 275 (289)
T ss_dssp --HHHTT-------CCCCCCS---SCTTHHHHHHHSCSSGGGSCCHHHHHHHHHTCC-
T ss_pred --Hhhcc-------CCCCCCC---CHHHHHHHHHHcCCChhHCcCHHHHHHHHHHhcC
Confidence 11110 0111101 1224556679999999999999999999996654
|
| >3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=2.9e-12 Score=140.17 Aligned_cols=125 Identities=15% Similarity=0.152 Sum_probs=82.2
Q ss_pred CCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCCch
Q 038019 642 KPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSLD 721 (866)
Q Consensus 642 ~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~ 721 (866)
..|++...+...++.|||.++.....+ .......||+.|+|||.+....++.++|||||||+++||+||+.|+.....
T Consensus 138 p~NIll~~~g~~kL~DFG~a~~~~~~~--~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~ 215 (345)
T 3a8x_A 138 LDNVLLDSEGHIKLTDYGMCKEGLRPG--DTTSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGS 215 (345)
T ss_dssp GGGEEECTTSCEEECCGGGCBCSCCTT--CCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTTTC
T ss_pred HHHEEECCCCCEEEEeccccccccCCC--CcccccCCCccccCccccCCCCCChHHhHHHHHHHHHHHHhCCCCcCCccc
Confidence 347777777778899999988643322 123345799999999999999999999999999999999999999964221
Q ss_pred hhh--hcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCH
Q 038019 722 MEK--IYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPM 777 (866)
Q Consensus 722 ~~~--~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm 777 (866)
... .............+.. .+...... .+.++...|++.||++||++
T Consensus 216 ~~~~~~~~~~~~~~~i~~~~~------~~p~~~s~---~~~~li~~lL~~dP~~R~~~ 264 (345)
T 3a8x_A 216 SDNPDQNTEDYLFQVILEKQI------RIPRSLSV---KAASVLKSFLNKDPKERLGC 264 (345)
T ss_dssp -------CHHHHHHHHHHCCC------CCCTTSCH---HHHHHHHHHTCSSTTTSTTC
T ss_pred ccccccccHHHHHHHHHcCCC------CCCCCCCH---HHHHHHHHHhcCCHhHCCCC
Confidence 110 0111122222222211 11111122 34456669999999999995
|
| >1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ... | Back alignment and structure |
|---|
Probab=99.23 E-value=3.5e-12 Score=139.83 Aligned_cols=120 Identities=13% Similarity=0.130 Sum_probs=85.0
Q ss_pred CCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCCch
Q 038019 642 KPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSLD 721 (866)
Q Consensus 642 ~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~ 721 (866)
..|++...+...++.|||.++.++.... ...||+.|+|||.+.+..++.++|||||||+++||+||+.|+.....
T Consensus 169 p~NIll~~~g~~kL~DFg~a~~~~~~~~-----~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~ 243 (350)
T 1rdq_E 169 PENLLIDQQGYIQVTDFGFAKRVKGRTW-----TLCGTPEALAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQP 243 (350)
T ss_dssp GGGEEECTTSCEEECCCTTCEECSSCBC-----CCEECGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSH
T ss_pred cceEEECCCCCEEEcccccceeccCCcc-----cccCCccccCHHHhcCCCCCCcCCEecccHhHhHHhhCCCCCCCCCH
Confidence 3467776677788999999988765432 24689999999999999999999999999999999999999975432
Q ss_pred hhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCC-----HHHHHH
Q 038019 722 MEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPP-----MSRVVA 782 (866)
Q Consensus 722 ~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPs-----m~~V~~ 782 (866)
.+ +.+ . +..+.. .+...... .+.++...|++.||++||+ +.||.+
T Consensus 244 ~~---~~~---~-i~~~~~------~~p~~~~~---~~~~li~~lL~~dp~~R~~~~~~~~~ei~~ 293 (350)
T 1rdq_E 244 IQ---IYE---K-IVSGKV------RFPSHFSS---DLKDLLRNLLQVDLTKRFGNLKNGVNDIKN 293 (350)
T ss_dssp HH---HHH---H-HHHCCC------CCCTTCCH---HHHHHHHHHSCSCTTTCTTSSTTTTHHHHT
T ss_pred HH---HHH---H-HHcCCC------CCCCCCCH---HHHHHHHHHhhcCHHhccCCccCCHHHHHh
Confidence 21 111 1 111211 11111122 3445666999999999998 777764
|
| >3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.23 E-value=2.9e-12 Score=140.82 Aligned_cols=133 Identities=12% Similarity=0.109 Sum_probs=82.9
Q ss_pred CCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeec-CCCCchhHHHHHHHHHHHHHhcCCCCCCCc
Q 038019 642 KPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMR-GHLTEKADVFSFGVVALEIISGRASSDKSL 720 (866)
Q Consensus 642 ~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~-~~~t~ksDVySfGvvLlEl~tg~~p~~~~~ 720 (866)
..|++...+...++.|||.++..+.. ..+..||.+|+|||.+.+ ..++.++|||||||+++||+||+.|+....
T Consensus 154 p~NIl~~~~~~~kl~Dfg~~~~~~~~-----~~~~~~t~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~ 228 (353)
T 3coi_A 154 PGNLAVNEDCELKILDFGLARHADAE-----MTGYVVTRWYRAPEVILSWMHYNQTVDIWSVGCIMAEMLTGKTLFKGKD 228 (353)
T ss_dssp GGGEEECTTCCEEECSTTCTTC-------------CCSBCCSCHHHHSCCSCCCTTHHHHHHHHHHHHHHHSSCSSBSSC
T ss_pred HHHEeECCCCcEEEeecccccCCCCC-----ccccccCcCcCCHHHHhCcCCCCchhhHHHHHHHHHHHHhCCCCCCCCC
Confidence 34677666667789999999876532 334578999999998876 788999999999999999999999997644
Q ss_pred hhhhhcHHHHHHHHhhcC------------------CcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 721 DMEKIYLLEWAWNLHENN------------------QSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 721 ~~~~~~l~~~~~~~~~~~------------------~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
..+. ...+....... .......+.+..........+.++...|++.||++|||+.|+++
T Consensus 229 ~~~~---~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dp~~Rpt~~e~l~ 305 (353)
T 3coi_A 229 YLDQ---LTQILKVTGVPGTEFVQKLNDKAAKSYIQSLPQTPRKDFTQLFPRASPQAADLLEKMLELDVDKRLTAAQALT 305 (353)
T ss_dssp HHHH---HHHHHHHHCBCCHHHHTTCSCHHHHHHHHTSCBCSSCCTTTTCTTSCHHHHHHHHHHSCSCTTTSCCHHHHHT
T ss_pred HHHH---HHHHHHHhCCCCHHHHHHHhhHHHHHHHHhCcCCCCccHHHhcCCcCHHHHHHHHHHcCCCcccCCCHHHHhc
Confidence 3221 11111110000 00000011111111112234556667999999999999999874
|
| >2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.23 E-value=3.5e-12 Score=136.15 Aligned_cols=125 Identities=19% Similarity=0.294 Sum_probs=81.2
Q ss_pred CcccCHH-HHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCC--CCchhHHHHHHHHHHHHHhcCCCCCCC
Q 038019 643 PNIFGYA-ELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGH--LTEKADVFSFGVVALEIISGRASSDKS 719 (866)
Q Consensus 643 ~~~~~~~-~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~--~t~ksDVySfGvvLlEl~tg~~p~~~~ 719 (866)
.|++... +...++.|||.+..+.... .......||.+|+|||....+. ++.++||||||++++||+||+.|+...
T Consensus 151 ~Nil~~~~~~~~kl~Dfg~~~~~~~~~--~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~ 228 (295)
T 2clq_A 151 DNVLINTYSGVLKISDFGTSKRLAGIN--PCTETFTGTLQYMAPEIIDKGPRGYGKAADIWSLGCTIIEMATGKPPFYEL 228 (295)
T ss_dssp GGEEEETTTCCEEECCTTTCEESCC-------CCCCCCGGGCCHHHHHHGGGGCSHHHHHHHHHHHHHHHHHTSCTTGGG
T ss_pred hhEEEECCCCCEEEeecccccccCCCC--CcccccCCCccccChhhhcCCCCCCCcHHHHHHHHHHHHHHHHCCCCccCC
Confidence 3555544 5567889999988775422 2223446899999999987653 899999999999999999999998643
Q ss_pred chhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 720 LDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 720 ~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
..... ..+..... ...+.+..... ..+.++...|++.||++||++.|+++
T Consensus 229 ~~~~~---~~~~~~~~-------~~~~~~~~~~~---~~~~~li~~~l~~dp~~Rps~~~ll~ 278 (295)
T 2clq_A 229 GEPQA---AMFKVGMF-------KVHPEIPESMS---AEAKAFILKCFEPDPDKRACANDLLV 278 (295)
T ss_dssp SSHHH---HHHHHHHH-------CCCCCCCTTSC---HHHHHHHHHTTCSSTTTSCCHHHHHT
T ss_pred CchhH---HHHhhccc-------cccccccccCC---HHHHHHHHHHccCChhhCCCHHHHhc
Confidence 22111 11111111 11222222122 23455667999999999999999974
|
| >3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A | Back alignment and structure |
|---|
Probab=99.23 E-value=4e-12 Score=151.46 Aligned_cols=124 Identities=18% Similarity=0.185 Sum_probs=86.5
Q ss_pred hccCCCCCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCC
Q 038019 636 LVGIGSKPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRAS 715 (866)
Q Consensus 636 ~~~~~~~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p 715 (866)
++......|++...+...++.|||+++.....+ .......||+.|||||++....++.++|||||||+++||+||+.|
T Consensus 464 iHrDLKp~NILl~~~g~ikL~DFGla~~~~~~~--~~~~~~~GT~~Y~APE~l~~~~~~~~~DvwSlGvilyelltG~~P 541 (674)
T 3pfq_A 464 IYRDLKLDNVMLDSEGHIKIADFGMCKENIWDG--VTTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAP 541 (674)
T ss_dssp ECCCCCSTTEEECSSSCEEECCCTTCEECCCTT--CCBCCCCSCSSSCCHHHHTCCCBSTHHHHHHHHHHHHHHHHSSCS
T ss_pred EeccCChhhEEEcCCCcEEEeecceeeccccCC--cccccccCCCcccCHhhhcCCCCCccceEechHHHHHHHHcCCCC
Confidence 344344457888788888999999998654332 223456799999999999999999999999999999999999999
Q ss_pred CCCCchhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCH
Q 038019 716 SDKSLDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPM 777 (866)
Q Consensus 716 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm 777 (866)
|......+ +.+ ... .+. ......... .+.++...|++.||++||++
T Consensus 542 f~~~~~~~---~~~---~i~-~~~------~~~p~~~s~---~~~~li~~lL~~dP~~R~~~ 587 (674)
T 3pfq_A 542 FEGEDEDE---LFQ---SIM-EHN------VAYPKSMSK---EAVAICKGLMTKHPGKRLGC 587 (674)
T ss_dssp SCCSSHHH---HHH---HHH-SSC------CCCCTTSCH---HHHHHHHHHSCSSSTTCTTC
T ss_pred CCCCCHHH---HHH---HHH-hCC------CCCCccCCH---HHHHHHHHHccCCHHHCCCC
Confidence 97643221 221 111 111 111111222 34455569999999999997
|
| >3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=4.7e-12 Score=137.56 Aligned_cols=128 Identities=16% Similarity=0.154 Sum_probs=82.3
Q ss_pred ccCCCCCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCC
Q 038019 637 VGIGSKPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASS 716 (866)
Q Consensus 637 ~~~~~~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~ 716 (866)
|......|++...+...++.|||.++.....+ .......||+.|+|||.+....++.++|||||||+++||++|+.|+
T Consensus 144 H~Dlkp~Nill~~~~~~kl~Dfg~~~~~~~~~--~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf 221 (327)
T 3a62_A 144 YRDLKPENIMLNHQGHVKLTDFGLCKESIHDG--TVTHTFCGTIEYMAPEILMRSGHNRAVDWWSLGALMYDMLTGAPPF 221 (327)
T ss_dssp CCCCCTTTEEECTTSCEEECCCSCC------------CTTSSCCTTSCHHHHTTSCCCTHHHHHHHHHHHHHHHHSSCSC
T ss_pred cccCCHHHeEECCCCcEEEEeCCcccccccCC--ccccccCCCcCccCHhhCcCCCCCCcccchhHHHHHHHHHHCCCCC
Confidence 33333447777677778899999987654332 2334457999999999999999999999999999999999999999
Q ss_pred CCCchhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCC-----CHHHHHH
Q 038019 717 DKSLDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRP-----PMSRVVA 782 (866)
Q Consensus 717 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RP-----sm~~V~~ 782 (866)
......+ ....+ .. +. ..+...... .+.++...|++.+|++|| ++.||++
T Consensus 222 ~~~~~~~---~~~~i---~~-~~------~~~p~~~~~---~~~~li~~~L~~dp~~R~~~~~~~~~e~l~ 276 (327)
T 3a62_A 222 TGENRKK---TIDKI---LK-CK------LNLPPYLTQ---EARDLLKKLLKRNAASRLGAGPGDAGEVQA 276 (327)
T ss_dssp CCSSHHH---HHHHH---HH-TC------CCCCTTSCH---HHHHHHHHHSCSCGGGSTTSSTTTHHHHHH
T ss_pred CCCCHHH---HHHHH---Hh-CC------CCCCCCCCH---HHHHHHHHHHhcCHhhccCCCCCCHHHHHc
Confidence 7543221 11111 11 11 111111122 344556699999999999 5666654
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=99.22 E-value=1.3e-11 Score=135.23 Aligned_cols=104 Identities=16% Similarity=0.111 Sum_probs=87.8
Q ss_pred EEEccc-CcCCCCCcccCCCCCCCEEEccC-CCCCCCCCccccCCCCcCEEeccCCcCCCCCCccccCCCCCCEeeccCC
Q 038019 70 LRVYGL-NKKGVIPEELVTLQYLTVLKIDQ-NFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKELTVLAFGTN 147 (866)
Q Consensus 70 L~l~~~-~l~~~~p~~l~~l~~L~~L~Ls~-n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N 147 (866)
++++++ +++. +|. |..+++|++|+|++ |.|++..+..|.+|++|++|+|++|+|++..|..|.+|++|++|+|++|
T Consensus 13 v~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 13 LRCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp EECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 455565 5664 777 99999999999996 9999888888999999999999999999988889999999999999999
Q ss_pred CCCCCCchhhcCCCCccEEEeecCCCCCC
Q 038019 148 NFSGALPPELGNLAKLEQLYIDSCGAGGE 176 (866)
Q Consensus 148 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ 176 (866)
+|++..+..+..++ |+.|+|.+|.+...
T Consensus 91 ~l~~~~~~~~~~~~-L~~l~l~~N~~~c~ 118 (347)
T 2ifg_A 91 ALESLSWKTVQGLS-LQELVLSGNPLHCS 118 (347)
T ss_dssp CCSCCCSTTTCSCC-CCEEECCSSCCCCC
T ss_pred ccceeCHHHcccCC-ceEEEeeCCCccCC
Confidence 99976666666665 88888888888754
|
| >2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=4.2e-12 Score=139.27 Aligned_cols=118 Identities=19% Similarity=0.201 Sum_probs=81.9
Q ss_pred CCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCCch
Q 038019 642 KPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSLD 721 (866)
Q Consensus 642 ~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~ 721 (866)
..|++...+...++.|||.++.....+ .......||+.|+|||.+....++.++|||||||+++||++|+.|+.....
T Consensus 149 p~NIll~~~g~vkL~DFG~a~~~~~~~--~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~~~ 226 (353)
T 2i0e_A 149 LDNVMLDSEGHIKIADFGMCKENIWDG--VTTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGEDE 226 (353)
T ss_dssp GGGEEECTTSCEEECCCTTCBCCCCTT--CCBCCCCSCGGGCCHHHHTTCCBSTHHHHHHHHHHHHHHHHSSCSSCCSSH
T ss_pred HHHEEEcCCCcEEEEeCCcccccccCC--cccccccCCccccChhhhcCCCcCCcccccchHHHHHHHHcCCCCCCCCCH
Confidence 347777777778899999988654322 123345799999999999999999999999999999999999999975432
Q ss_pred hhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCH
Q 038019 722 MEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPM 777 (866)
Q Consensus 722 ~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm 777 (866)
.+ +.+.+ .. +. +........ .+.++...|++.+|++||++
T Consensus 227 ~~---~~~~i---~~-~~------~~~p~~~s~---~~~~li~~lL~~dP~~R~~~ 266 (353)
T 2i0e_A 227 DE---LFQSI---ME-HN------VAYPKSMSK---EAVAICKGLMTKHPGKRLGC 266 (353)
T ss_dssp HH---HHHHH---HH-CC------CCCCTTSCH---HHHHHHHHHTCSCTTSCTTC
T ss_pred HH---HHHHH---Hh-CC------CCCCCCCCH---HHHHHHHHHhhcCHHHcCCC
Confidence 21 22111 11 11 111111122 34456669999999999964
|
| >3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 4gsb_A* 4gt3_A* 4gva_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3zu7_A 3zuv_A* 3o71_A 3r63_A 3c9w_A* 2y9q_A* 4fmq_A* ... | Back alignment and structure |
|---|
Probab=99.22 E-value=1.3e-12 Score=144.21 Aligned_cols=138 Identities=14% Similarity=0.140 Sum_probs=86.5
Q ss_pred CCcccCHHHHHHHhcCCccccccCCCCcee-EEEeecCCCCccCceeeec-CCCCchhHHHHHHHHHHHHHhcCCCCCCC
Q 038019 642 KPNIFGYAELRSATKDFNRSNKLGEGGYGP-VYKVTANSYGYLAPEYAMR-GHLTEKADVFSFGVVALEIISGRASSDKS 719 (866)
Q Consensus 642 ~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~-vy~~~~gt~gY~aPE~~~~-~~~t~ksDVySfGvvLlEl~tg~~p~~~~ 719 (866)
..|++...+...++.|||.+...+...... ......||.+|+|||.+.. ..++.++|||||||+++||+||+.|+...
T Consensus 156 p~NIl~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~ 235 (364)
T 3qyz_A 156 PSNLLLNTTCDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGK 235 (364)
T ss_dssp GGGEEECTTCCEEECCCTTCEECCGGGCBCCTTCCCCSCGGGCCHHHHHTBCSCSTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred hHhEEECCCCCEEEEeCcceEecCCCCCccccccccccccCCCCCHHhcCCCCCCcchhHHHHHHHHHHHHHCCCCCCCC
Confidence 346776666677899999998776432111 1123478999999998764 45899999999999999999999999765
Q ss_pred chhhhhcHHHHHHHHhhcCC---c------------ccccCCcc---cccCHHHHHHHHHHHHHccCCCCCCCCCHHHHH
Q 038019 720 LDMEKIYLLEWAWNLHENNQ---S------------FGLVDPTL---TEFNDKEALRVIGVALLCTQTSPMMRPPMSRVV 781 (866)
Q Consensus 720 ~~~~~~~l~~~~~~~~~~~~---~------------~~~~d~~l---~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~ 781 (866)
...+. ...+........ . .....+.- ..........+.++...|++.||++|||+.|++
T Consensus 236 ~~~~~---~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l 312 (364)
T 3qyz_A 236 HYLDQ---LNHILGILGSPSQEDLNCIINLKARNYLLSLPHKNKVPWNRLFPNADSKALDLLDKMLTFNPHKRIEVEQAL 312 (364)
T ss_dssp SGGGH---HHHHHHHHCSCCHHHHHTCCCHHHHHHHHTSCCCCCCCHHHHCTTSCHHHHHHHHHHTCSSTTTSCCHHHHH
T ss_pred ChHHH---HHHHHHHhCCCCHHHHHHhhhhhHHHHHHhcCCccCCCHHHhCCCCCHHHHHHHHHHcCCChhhCCCHHHHh
Confidence 43322 111111110000 0 00000000 000011123456677799999999999999997
Q ss_pred H
Q 038019 782 A 782 (866)
Q Consensus 782 ~ 782 (866)
+
T Consensus 313 ~ 313 (364)
T 3qyz_A 313 A 313 (364)
T ss_dssp T
T ss_pred c
Confidence 5
|
| >3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ... | Back alignment and structure |
|---|
Probab=99.22 E-value=2e-12 Score=137.21 Aligned_cols=116 Identities=20% Similarity=0.198 Sum_probs=77.2
Q ss_pred HHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCCchhhhhcHHHHH
Q 038019 652 RSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSLDMEKIYLLEWA 731 (866)
Q Consensus 652 ~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~~~~~~l~~~~ 731 (866)
..++.|||.+..+..+. .+....||..|+|||......++.++||||||++++||+||+.|+......+ ...
T Consensus 150 ~~kl~dfg~~~~~~~~~---~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~---~~~-- 221 (283)
T 3bhy_A 150 RIKLIDFGIAHKIEAGN---EFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGETKQE---TLT-- 221 (283)
T ss_dssp CEEECCCTTCEECC-----------CCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCSSHHH---HHH--
T ss_pred ceEEEecccceeccCCC---cccccCCCcCccCcceecCCCCCcchhhhhHHHHHHHHHHCCCCCCCcchHH---HHH--
Confidence 45789999998876543 2345578999999999998999999999999999999999999997543221 111
Q ss_pred HHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 732 WNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 732 ~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
. ...... ..++...... ...+.++...|++.+|++||++.|+++
T Consensus 222 -~-~~~~~~--~~~~~~~~~~---~~~~~~li~~~l~~dp~~Rps~~~~l~ 265 (283)
T 3bhy_A 222 -N-ISAVNY--DFDEEYFSNT---SELAKDFIRRLLVKDPKRRMTIAQSLE 265 (283)
T ss_dssp -H-HHTTCC--CCCHHHHTTC---CHHHHHHHHTTSCSSGGGSCCHHHHHH
T ss_pred -H-hHhccc--CCcchhcccC---CHHHHHHHHHHccCCHhHCcCHHHHHh
Confidence 1 111100 0111110111 223556677999999999999999986
|
| >3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B* | Back alignment and structure |
|---|
Probab=99.22 E-value=3.4e-12 Score=142.28 Aligned_cols=79 Identities=16% Similarity=0.223 Sum_probs=59.8
Q ss_pred CCcccCHHHHHHHhcCCccccccCCCCcee-----EEEeecCCCCccCceeeec--CCCCchhHHHHHHHHHHHHHhcCC
Q 038019 642 KPNIFGYAELRSATKDFNRSNKLGEGGYGP-----VYKVTANSYGYLAPEYAMR--GHLTEKADVFSFGVVALEIISGRA 714 (866)
Q Consensus 642 ~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~-----vy~~~~gt~gY~aPE~~~~--~~~t~ksDVySfGvvLlEl~tg~~ 714 (866)
..|++...+...++.|||.+..+..++... ......||..|+|||.+.. ..++.++|||||||+++||+||+.
T Consensus 156 p~NIll~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~DiwslG~il~el~~g~~ 235 (389)
T 3gni_B 156 ASHILISVDGKVYLSGLRSNLSMISHGQRQRVVHDFPKYSVKVLPWLSPEVLQQNLQGYDAKSDIYSVGITACELANGHV 235 (389)
T ss_dssp GGGEEECTTCCEEECCGGGCEECEETTEECSCBCCCCTTCTTTGGGSCHHHHSTTSSCBCTHHHHHHHHHHHHHHHHSSC
T ss_pred HHHEEEcCCCCEEEcccccceeeccccccccccccccccccccccccCHHHHhccCCCCCcHhHHHHHHHHHHHHHHCCC
Confidence 346776666677888998876654333211 1112368999999999987 689999999999999999999999
Q ss_pred CCCCCc
Q 038019 715 SSDKSL 720 (866)
Q Consensus 715 p~~~~~ 720 (866)
|+....
T Consensus 236 pf~~~~ 241 (389)
T 3gni_B 236 PFKDMP 241 (389)
T ss_dssp TTTTCC
T ss_pred CCCCCC
Confidence 997543
|
| >2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=2.5e-12 Score=148.75 Aligned_cols=127 Identities=18% Similarity=0.151 Sum_probs=87.9
Q ss_pred CCCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCCc
Q 038019 641 SKPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSL 720 (866)
Q Consensus 641 ~~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~ 720 (866)
...|++...+...++.|||.++.+..+.. ..+..||++|+|||++....++.++|||||||+++||+||+.|+....
T Consensus 313 KPeNILld~~g~vKL~DFGla~~~~~~~~---~~~~~GT~~Y~APEvl~~~~~~~~~DiwSLGvilyeLltG~~PF~~~~ 389 (576)
T 2acx_A 313 KPENILLDDHGHIRISDLGLAVHVPEGQT---IKGRVGTVGYMAPEVVKNERYTFSPDWWALGCLLYEMIAGQSPFQQRK 389 (576)
T ss_dssp CGGGEEECTTSCEEECCCTTCEECCTTCC---EECCCSCGGGCCHHHHTTCEESSHHHHHHHHHHHHHHHHSSCSSSCSS
T ss_pred chheEEEeCCCCeEEEecccceecccCcc---ccccCCCccccCHHHHcCCCCCccchHHHHHHHHHHHHhCCCCCcccc
Confidence 33477777777889999999998876542 345689999999999999899999999999999999999999997543
Q ss_pred hhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCC-----CHHHHHH
Q 038019 721 DMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRP-----PMSRVVA 782 (866)
Q Consensus 721 ~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RP-----sm~~V~~ 782 (866)
.... .. .+....... .+........ .+.++...|++.||++|| ++.||.+
T Consensus 390 ~~~~--~~-~i~~~i~~~------~~~~p~~~s~---~~~dLI~~lL~~dP~~R~g~~~~sa~eil~ 444 (576)
T 2acx_A 390 KKIK--RE-EVERLVKEV------PEEYSERFSP---QARSLCSQLLCKDPAERLGCRGGSAREVKE 444 (576)
T ss_dssp SCCC--HH-HHHHHHHHC------CCCCCTTSCH---HHHHHHHHHTCSSGGGSTTCSSSHHHHHHT
T ss_pred cchh--HH-HHHHHhhcc------cccCCccCCH---HHHHHHHHhccCCHHHcCCCCCCCHHHHHh
Confidence 2111 11 111111111 0111111122 344556699999999999 6777763
|
| >2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=2.7e-12 Score=141.84 Aligned_cols=125 Identities=16% Similarity=0.105 Sum_probs=85.4
Q ss_pred CCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCCch
Q 038019 642 KPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSLD 721 (866)
Q Consensus 642 ~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~ 721 (866)
..|++...+...++.|||.++...... .......||+.|+|||.+.+..++.++|||||||+++||++|+.|+.....
T Consensus 167 p~NIll~~~g~ikL~DFG~a~~~~~~~--~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~~~ 244 (373)
T 2r5t_A 167 PENILLDSQGHIVLTDFGLCKENIEHN--STTSTFCGTPEYLAPEVLHKQPYDRTVDWWCLGAVLYEMLYGLPPFYSRNT 244 (373)
T ss_dssp GGGEEECTTSCEEECCCCBCGGGBCCC--CCCCSBSCCCCCCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCSBH
T ss_pred HHHEEECCCCCEEEeeCccccccccCC--CccccccCCccccCHHHhCCCCCCchhhhHHHHHHHHHHHcCCCCCCCCCH
Confidence 347777777778899999988643322 123345799999999999999999999999999999999999999975432
Q ss_pred hhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHH
Q 038019 722 MEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAML 784 (866)
Q Consensus 722 ~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L 784 (866)
.+ +.+ .... +.. .+......+ +.++...|++.||++||++.+.++.+
T Consensus 245 ~~---~~~---~i~~-~~~------~~~~~~~~~---~~~li~~lL~~dp~~R~~~~~~~~~i 291 (373)
T 2r5t_A 245 AE---MYD---NILN-KPL------QLKPNITNS---ARHLLEGLLQKDRTKRLGAKDDFMEI 291 (373)
T ss_dssp HH---HHH---HHHH-SCC------CCCSSSCHH---HHHHHHHHTCSSGGGSTTTTTTHHHH
T ss_pred HH---HHH---HHHh-ccc------CCCCCCCHH---HHHHHHHHcccCHHhCCCCCCCHHHH
Confidence 22 111 1111 111 111111223 44456699999999999986544443
|
| >2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=3.1e-12 Score=136.66 Aligned_cols=122 Identities=21% Similarity=0.319 Sum_probs=86.1
Q ss_pred CcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCCchh
Q 038019 643 PNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSLDM 722 (866)
Q Consensus 643 ~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~~ 722 (866)
.|++...+...++.|||.+..+...+. ......||.+|+|||......++.++||||||++++||+||+.|+......
T Consensus 144 ~Nil~~~~~~~kl~dfg~~~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~ 221 (294)
T 2rku_A 144 GNLFLNEDLEVKIGDFGLATKVEYDGE--RKKVLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFETSCLK 221 (294)
T ss_dssp GGEEECTTCCEEECCCTTCEECCSTTC--CBCCCCSCCSSCCHHHHTTSCBCTHHHHHHHHHHHHHHHHSSCTTCCSSHH
T ss_pred HhEEEcCCCCEEEEeccCceecccCcc--ccccccCCCCcCCcchhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHH
Confidence 466666666778999999988764332 123356899999999999889999999999999999999999999754322
Q ss_pred hhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 723 EKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 723 ~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
+. .... ..+. ..+...... .+.++...|++.+|++||++.|+++
T Consensus 222 ~~------~~~~-~~~~------~~~~~~~~~---~~~~li~~~l~~~p~~Rps~~~ll~ 265 (294)
T 2rku_A 222 ET------YLRI-KKNE------YSIPKHINP---VAASLIQKMLQTDPTARPTINELLN 265 (294)
T ss_dssp HH------HHHH-HTTC------CCCCTTSCH---HHHHHHHHHTCSSGGGSCCGGGGGG
T ss_pred HH------HHHH-hhcc------CCCccccCH---HHHHHHHHHcccChhhCcCHHHHhh
Confidence 21 1111 1111 111111122 3445666999999999999999986
|
| >2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=2.6e-12 Score=140.06 Aligned_cols=123 Identities=21% Similarity=0.311 Sum_probs=86.8
Q ss_pred CCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCCch
Q 038019 642 KPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSLD 721 (866)
Q Consensus 642 ~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~ 721 (866)
..|++...+...++.|||.+..+...+. ......||.+|+|||.+....++.++|||||||+++||+||+.|+.....
T Consensus 169 p~NIl~~~~~~~kl~Dfg~~~~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~ 246 (335)
T 2owb_A 169 LGNLFLNEDLEVKIGDFGLATKVEYDGE--RKKVLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFETSCL 246 (335)
T ss_dssp GGGEEECTTCCEEECCCTTCEECCSTTC--CBCCCCSCCSSCCHHHHHTSCBCTHHHHHHHHHHHHHHHHSSCTTCCSSH
T ss_pred chhEEEcCCCCEEEeeccCceecccCcc--cccccCCCccccCHHHhccCCCCchhhHHHHHHHHHHHHHCcCCCCCCCH
Confidence 3467766666788999999988764432 22345689999999999998999999999999999999999999975432
Q ss_pred hhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 722 MEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 722 ~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
.+. ...... +. ..+...... .+.++...|++.||++||++.|+++
T Consensus 247 ~~~------~~~~~~-~~------~~~~~~~~~---~~~~li~~~l~~dp~~Rps~~ell~ 291 (335)
T 2owb_A 247 KET------YLRIKK-NE------YSIPKHINP---VAASLIQKMLQTDPTARPTINELLN 291 (335)
T ss_dssp HHH------HHHHHH-TC------CCCCTTSCH---HHHHHHHHHTCSSGGGSCCGGGGGG
T ss_pred HHH------HHHHhc-CC------CCCCccCCH---HHHHHHHHHccCChhHCcCHHHHhc
Confidence 221 111111 11 111111122 3445666999999999999999986
|
| >3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3twj_A* 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=4e-12 Score=142.09 Aligned_cols=130 Identities=16% Similarity=0.156 Sum_probs=87.4
Q ss_pred CCCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCC----CCchhHHHHHHHHHHHHHhcCCCC
Q 038019 641 SKPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGH----LTEKADVFSFGVVALEIISGRASS 716 (866)
Q Consensus 641 ~~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~----~t~ksDVySfGvvLlEl~tg~~p~ 716 (866)
...|++...+...++.|||.++.+...+.. ......||++|||||++.... ++.++|||||||+++||+||+.|+
T Consensus 195 Kp~NILl~~~g~ikL~DFG~a~~~~~~~~~-~~~~~~gt~~Y~APE~l~~~~~~~~~~~~~DiwSlGvilyell~G~~Pf 273 (410)
T 3v8s_A 195 KPDNMLLDKSGHLKLADFGTCMKMNKEGMV-RCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEMLVGDTPF 273 (410)
T ss_dssp SGGGEEECTTSCEEECCCTTCEECCTTSEE-ECCSCCSCGGGCCHHHHHTTTTTCEEETHHHHHHHHHHHHHHHHSSCTT
T ss_pred CHHHeeECCCCCEEEeccceeEeeccCCcc-cccCCcCCccccCHHHhhccCCCcCCCCcceEecchHHHHHHHhCCCCC
Confidence 334777777778899999999988765431 223457999999999987654 889999999999999999999999
Q ss_pred CCCchhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCC--CCCHHHHHHH
Q 038019 717 DKSLDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMM--RPPMSRVVAM 783 (866)
Q Consensus 717 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~--RPsm~~V~~~ 783 (866)
......+ ....+..... ...-|..... .+++ .++...|++.+|.+ ||++.||.+.
T Consensus 274 ~~~~~~~---~~~~i~~~~~-----~~~~p~~~~~-s~~~---~~li~~lL~~~~~rlgR~~~~ei~~H 330 (410)
T 3v8s_A 274 YADSLVG---TYSKIMNHKN-----SLTFPDDNDI-SKEA---KNLICAFLTDREVRLGRNGVEEIKRH 330 (410)
T ss_dssp CCSSHHH---HHHHHHTHHH-----HCCCCTTCCC-CHHH---HHHHHHHSSCGGGCTTSSCHHHHHTS
T ss_pred CCCChhh---HHHHHHhccc-----cccCCCcccc-cHHH---HHHHHHHccChhhhCCCCCHHHHhcC
Confidence 7543322 1111111000 0001111111 2333 34555899988988 9999999863
|
| >2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.21 E-value=6.9e-13 Score=143.36 Aligned_cols=134 Identities=19% Similarity=0.166 Sum_probs=85.0
Q ss_pred CCcccCHHHHHHHhcCCccccccCCCCcee-------EEEeecCCCCccCceeeecC---CCCchhHHHHHHHHHHHHHh
Q 038019 642 KPNIFGYAELRSATKDFNRSNKLGEGGYGP-------VYKVTANSYGYLAPEYAMRG---HLTEKADVFSFGVVALEIIS 711 (866)
Q Consensus 642 ~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~-------vy~~~~gt~gY~aPE~~~~~---~~t~ksDVySfGvvLlEl~t 711 (866)
..|++...+...++.|||.++.......+. -+....||..|+|||.+... .++.++|||||||+++||+|
T Consensus 162 p~NIl~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~ 241 (317)
T 2buj_A 162 PTNILLGDEGQPVLMDLGSMNQACIHVEGSRQALTLQDWAAQRCTISYRAPELFSVQSHCVIDERTDVWSLGCVLYAMMF 241 (317)
T ss_dssp GGGEEECTTSCEEECCCSSCEESCEEEESHHHHHHHHHHHHHHSCGGGCCGGGSSCCSEEEECTHHHHHHHHHHHHHHHH
T ss_pred HHHEEEcCCCCEEEEecCcchhcccccccccccccccccccccCCcccCCHhHhccCCCcCCCchhhHHHHHHHHHHHHh
Confidence 346666666677889999876653210000 00122579999999988644 37899999999999999999
Q ss_pred cCCCCCCCchhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhcCc
Q 038019 712 GRASSDKSLDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLAGDI 788 (866)
Q Consensus 712 g~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~~~~ 788 (866)
|+.|++...... ..+..... .. ..-|.....+ ..+.++...|++.||++||++.||++.|+...
T Consensus 242 g~~p~~~~~~~~-~~~~~~~~----~~----~~~~~~~~~~----~~l~~li~~~l~~dp~~Rps~~~ll~~L~~~~ 305 (317)
T 2buj_A 242 GEGPYDMVFQKG-DSVALAVQ----NQ----LSIPQSPRHS----SALWQLLNSMMTVDPHQRPHIPLLLSQLEALQ 305 (317)
T ss_dssp SSCTTHHHHHTT-SCHHHHHH----CC------CCCCTTSC----HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHTC
T ss_pred CCCChhhhhccc-chhhHHhh----cc----CCCCccccCC----HHHHHHHHHHhhcChhhCCCHHHHHHHhhhcC
Confidence 999985321111 11111111 10 0001111122 24556667999999999999999999999653
|
| >2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ... | Back alignment and structure |
|---|
Probab=99.21 E-value=5.5e-12 Score=133.97 Aligned_cols=120 Identities=20% Similarity=0.211 Sum_probs=84.2
Q ss_pred CcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCCchh
Q 038019 643 PNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSLDM 722 (866)
Q Consensus 643 ~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~~ 722 (866)
.|++...+...++.|||.+........ ....||..|+|||...+..++.++||||||++++||++|+.|++.....
T Consensus 143 ~Nil~~~~~~~kl~Dfg~~~~~~~~~~----~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~ 218 (284)
T 2vgo_A 143 ENLLMGYKGELKIADFGWSVHAPSLRR----RTMCGTLDYLPPEMIEGKTHDEKVDLWCAGVLCYEFLVGMPPFDSPSHT 218 (284)
T ss_dssp GGEEECTTCCEEECCCTTCEECSSSCB----CCCCSCGGGCCHHHHTTCCBCTTHHHHHHHHHHHHHHHSSCTTCCSSHH
T ss_pred HHEEEcCCCCEEEecccccccCccccc----ccccCCCCcCCHHHhccCCCCcccchhhHHHHHHHHHHCCCCCCCCCHh
Confidence 366665566678899998876654321 2346899999999999999999999999999999999999999754322
Q ss_pred hhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 723 EKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 723 ~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
+ . ..... .. +..+.....+ .+.++...|++.+|++||++.|+++
T Consensus 219 ~---~---~~~~~-~~------~~~~~~~~~~---~~~~li~~~l~~~p~~Rps~~~ll~ 262 (284)
T 2vgo_A 219 E---T---HRRIV-NV------DLKFPPFLSD---GSKDLISKLLRYHPPQRLPLKGVME 262 (284)
T ss_dssp H---H---HHHHH-TT------CCCCCTTSCH---HHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred H---H---HHHHh-cc------ccCCCCcCCH---HHHHHHHHHhhcCHhhCCCHHHHhh
Confidence 2 1 11111 11 1112111122 3445666999999999999999975
|
| >2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A | Back alignment and structure |
|---|
Probab=99.21 E-value=2.9e-12 Score=141.52 Aligned_cols=125 Identities=19% Similarity=0.247 Sum_probs=85.5
Q ss_pred CcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeec------CCCCchhHHHHHHHHHHHHHhcCCCC
Q 038019 643 PNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMR------GHLTEKADVFSFGVVALEIISGRASS 716 (866)
Q Consensus 643 ~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~------~~~t~ksDVySfGvvLlEl~tg~~p~ 716 (866)
.|++...+...++.|||.+..+..+.. .....||++|+|||++.+ ..++.++|||||||+++||+||+.|+
T Consensus 229 ~NIl~~~~~~ikl~DfG~~~~~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~il~ell~g~~pf 305 (365)
T 2y7j_A 229 ENILLDDNMQIRLSDFGFSCHLEPGEK---LRELCGTPGYLAPEILKCSMDETHPGYGKEVDLWACGVILFTLLAGSPPF 305 (365)
T ss_dssp GGEEECTTCCEEECCCTTCEECCTTCC---BCCCCSCGGGCCHHHHHHTTCTTSCCBCTTHHHHHHHHHHHHHHHSSCSS
T ss_pred HHEEECCCCCEEEEecCcccccCCCcc---cccCCCCCCccChhhccccccccCcCCCchhhHHhHHHHHHHHHHCCCCC
Confidence 467777777788999999888765432 234579999999998863 36889999999999999999999999
Q ss_pred CCCchhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 717 DKSLDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 717 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
....... ....+ ..+.. ....|..... ...+.++...|++.||++||++.|+++
T Consensus 306 ~~~~~~~---~~~~i----~~~~~-~~~~~~~~~~----~~~~~~li~~~L~~dP~~Rps~~ell~ 359 (365)
T 2y7j_A 306 WHRRQIL---MLRMI----MEGQY-QFSSPEWDDR----SSTVKDLISRLLQVDPEARLTAEQALQ 359 (365)
T ss_dssp CCSSHHH---HHHHH----HHTCC-CCCHHHHSSS----CHHHHHHHHHHSCSSTTTSCCHHHHHH
T ss_pred CCCCHHH---HHHHH----HhCCC-CCCCcccccC----CHHHHHHHHHHcCCChhHCcCHHHHhc
Confidence 7543221 11111 11111 0000000111 123556677999999999999999986
|
| >1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7 | Back alignment and structure |
|---|
Probab=99.21 E-value=6.6e-12 Score=135.69 Aligned_cols=120 Identities=17% Similarity=0.169 Sum_probs=84.9
Q ss_pred CCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCCch
Q 038019 642 KPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSLD 721 (866)
Q Consensus 642 ~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~ 721 (866)
..|++...+...++.|||.++.+.... ....||+.|+|||.+....++.++|||||||+++||++|+.|+.....
T Consensus 134 p~NIll~~~g~~kL~Dfg~a~~~~~~~-----~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~ 208 (318)
T 1fot_A 134 PENILLDKNGHIKITDFGFAKYVPDVT-----YTLCGTPDYIAPEVVSTKPYNKSIDWWSFGILIYEMLAGYTPFYDSNT 208 (318)
T ss_dssp GGGEEECTTSCEEECCCSSCEECSSCB-----CCCCSCTTTCCHHHHTTCCBCTTHHHHHHHHHHHHHHHSSCTTCCSSH
T ss_pred hheEEEcCCCCEEEeecCcceecCCcc-----ccccCCccccCHhHhcCCCCCcccchhhhHHHHHHHHhCCCCCCCCCH
Confidence 346777667778899999998876432 234699999999999999999999999999999999999999975432
Q ss_pred hhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCC-----CHHHHHH
Q 038019 722 MEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRP-----PMSRVVA 782 (866)
Q Consensus 722 ~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RP-----sm~~V~~ 782 (866)
.+ .. ..... +. ........++ +.++...|++.+|++|| ++.||.+
T Consensus 209 ~~---~~---~~i~~-~~------~~~p~~~~~~---~~~li~~lL~~dp~~R~~~~~~~~~~i~~ 258 (318)
T 1fot_A 209 MK---TY---EKILN-AE------LRFPPFFNED---VKDLLSRLITRDLSQRLGNLQNGTEDVKN 258 (318)
T ss_dssp HH---HH---HHHHH-CC------CCCCTTSCHH---HHHHHHHHTCSCTTTCTTSSTTTTHHHHT
T ss_pred HH---HH---HHHHh-CC------CCCCCCCCHH---HHHHHHHHhccCHHHcCCCcCCCHHHHhc
Confidence 21 11 11111 11 1111112233 44455699999999999 7888763
|
| >3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} PDB: 3uib_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=4.7e-12 Score=139.57 Aligned_cols=135 Identities=17% Similarity=0.105 Sum_probs=79.0
Q ss_pred CCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeec-CCCCchhHHHHHHHHHHHHHhcCCCCCCCc
Q 038019 642 KPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMR-GHLTEKADVFSFGVVALEIISGRASSDKSL 720 (866)
Q Consensus 642 ~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~-~~~t~ksDVySfGvvLlEl~tg~~p~~~~~ 720 (866)
..|++...+...++.|||.+........ .....||..|+|||.+.. ..++.++|||||||+++||+||+.|+....
T Consensus 162 p~NIl~~~~~~~kl~Dfg~~~~~~~~~~---~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~ 238 (362)
T 3pg1_A 162 PGNILLADNNDITICDFNLAREDTADAN---KTHYVTHRWYRAPELVMQFKGFTKLVDMWSAGCVMAEMFNRKALFRGST 238 (362)
T ss_dssp GGGEEECTTCCEEECCTTC------------------CGGGCCHHHHTTCTTCCTHHHHHHHHHHHHHHHHSSCSCCCSS
T ss_pred hHHEEEcCCCCEEEEecCcccccccccc---cceecccceecCcHHhcCCCCCCcHhHHHhHHHHHHHHHhCCCCCCCCC
Confidence 3466666666788999999986654432 234468999999998876 779999999999999999999999998654
Q ss_pred hhhhhcHHHHHHHHhhc-------------------CCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHH
Q 038019 721 DMEKIYLLEWAWNLHEN-------------------NQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVV 781 (866)
Q Consensus 721 ~~~~~~l~~~~~~~~~~-------------------~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~ 781 (866)
..+. ...+...... .....................+.++...|++.||++|||+.|++
T Consensus 239 ~~~~---~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell 315 (362)
T 3pg1_A 239 FYNQ---LNKIVEVVGTPKIEDVVMFSSPSARDYLRNSLSNVPARAWTAVVPTADPVALDLIAKMLEFNPQRRISTEQAL 315 (362)
T ss_dssp HHHH---HHHHHHHHCCCCHHHHHHTSCHHHHHHTTTCCCCCCCCCHHHHSTTSCHHHHHHHHHHTCSSGGGSCCHHHHH
T ss_pred HHHH---HHHHHHHcCCCChHHhhhccchhhhHHHHhhcccCChhhHHhhCCCCCHHHHHHHHHHhcCChhhCCCHHHHH
Confidence 3221 1111111000 00000000000011111123456677799999999999999997
Q ss_pred H
Q 038019 782 A 782 (866)
Q Consensus 782 ~ 782 (866)
+
T Consensus 316 ~ 316 (362)
T 3pg1_A 316 R 316 (362)
T ss_dssp T
T ss_pred c
Confidence 5
|
| >3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.20 E-value=3.5e-12 Score=137.57 Aligned_cols=125 Identities=18% Similarity=0.222 Sum_probs=85.3
Q ss_pred CcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCCchh
Q 038019 643 PNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSLDM 722 (866)
Q Consensus 643 ~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~~ 722 (866)
.|++...+...++.|||.+..++.... ......||..|+|||......++.++||||||++++||+||+.|+......
T Consensus 154 ~Nil~~~~~~~kl~dfg~~~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~ 231 (314)
T 3com_A 154 GNILLNTEGHAKLADFGVAGQLTDTMA--KRNTVIGTPFWMAPEVIQEIGYNCVADIWSLGITAIEMAEGKPPYADIHPM 231 (314)
T ss_dssp GGEEECTTCCEEECCCTTCEECBTTBS--CBCCCCSCGGGCCHHHHSSSCBCTTHHHHHHHHHHHHHHHSSCTTTTSCHH
T ss_pred HHEEECCCCCEEEeecccchhhhhhcc--ccCccCCCCCccChhhcCCCCCCccccHHHHHHHHHHHHhCCCCCCCCChH
Confidence 366666666778999999887764321 122346899999999999999999999999999999999999998754322
Q ss_pred hhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 723 EKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 723 ~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
.. .... .......... ..... ..+.++...|++.||++||++.++++
T Consensus 232 ~~------~~~~-~~~~~~~~~~---~~~~~---~~l~~li~~~l~~dp~~Rpt~~~ll~ 278 (314)
T 3com_A 232 RA------IFMI-PTNPPPTFRK---PELWS---DNFTDFVKQCLVKSPEQRATATQLLQ 278 (314)
T ss_dssp HH------HHHH-HHSCCCCCSS---GGGSC---HHHHHHHHHHTCSCTTTSCCHHHHTT
T ss_pred HH------HHHH-hcCCCcccCC---cccCC---HHHHHHHHHHccCChhhCcCHHHHHh
Confidence 11 1111 1111000100 11112 23455667999999999999999975
|
| >2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.20 E-value=6.1e-12 Score=136.43 Aligned_cols=123 Identities=20% Similarity=0.235 Sum_probs=76.9
Q ss_pred CcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeee-----cCCCCchhHHHHHHHHHHHHHhcCCCCC
Q 038019 643 PNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAM-----RGHLTEKADVFSFGVVALEIISGRASSD 717 (866)
Q Consensus 643 ~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~-----~~~~t~ksDVySfGvvLlEl~tg~~p~~ 717 (866)
.|++...+...++.|||.+..+.... .......||..|+|||.+. ...++.++|||||||+++||+||+.|+.
T Consensus 158 ~NIl~~~~~~~kl~Dfg~~~~~~~~~--~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~ 235 (326)
T 2x7f_A 158 QNVLLTENAEVKLVDFGVSAQLDRTV--GRRNTFIGTPYWMAPEVIACDENPDATYDFKSDLWSLGITAIEMAEGAPPLC 235 (326)
T ss_dssp GGEEECTTCCEEECCCTTTC---------------CCGGGCCHHHHC--------CCTTHHHHHHHHHHHHHHHSSCTTT
T ss_pred HHEEEcCCCCEEEeeCcCceecCcCc--cccccccCCccccChhhhccccccCcCCCccchHHHHHHHHHHHHhCCCCCC
Confidence 36666666677899999988775421 1123346899999999986 5678999999999999999999999987
Q ss_pred CCchhhhhcHHHHHHHHhhcCCcccccCCcc-cccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 718 KSLDMEKIYLLEWAWNLHENNQSFGLVDPTL-TEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 718 ~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l-~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
....... .. .... .. .+.+ .....+ .+.++...|++.+|++||++.|+++
T Consensus 236 ~~~~~~~---~~---~~~~-~~-----~~~~~~~~~~~---~l~~li~~~l~~dp~~Rps~~~ll~ 286 (326)
T 2x7f_A 236 DMHPMRA---LF---LIPR-NP-----APRLKSKKWSK---KFQSFIESCLVKNHSQRPATEQLMK 286 (326)
T ss_dssp TSCHHHH---HH---HHHH-SC-----CCCCSCSCSCH---HHHHHHHHHCCSSGGGSCCHHHHHT
T ss_pred CCcHHHH---HH---Hhhc-Cc-----cccCCccccCH---HHHHHHHHHhccChhhCCCHHHHhh
Confidence 5433221 11 1111 11 1111 111122 3445666999999999999999986
|
| >2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A | Back alignment and structure |
|---|
Probab=99.20 E-value=7.3e-12 Score=134.45 Aligned_cols=119 Identities=16% Similarity=0.220 Sum_probs=81.7
Q ss_pred HHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCCchhhhhcH
Q 038019 648 YAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSLDMEKIYL 727 (866)
Q Consensus 648 ~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~~~~~~l 727 (866)
..+...++.|||.+.....+.. ....||.+|+|||.+....++.++||||||++++||+||+.|+....... +
T Consensus 143 ~~~~~~kl~Dfg~~~~~~~~~~----~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~---~ 215 (304)
T 2jam_A 143 EENSKIMITDFGLSKMEQNGIM----STACGTPGYVAPEVLAQKPYSKAVDCWSIGVITYILLCGYPPFYEETESK---L 215 (304)
T ss_dssp STTCCEEBCSCSTTCCCCCBTT----HHHHSCCCBCCTTTBSSCSCCHHHHHHHHHHHHHHHHHSSCTTTTSCHHH---H
T ss_pred CCCCCEEEccCCcceecCCCcc----ccccCCCCccChHHhccCCCCchhhHHHHHHHHHHHHHCCCCCCCCCHHH---H
Confidence 3445567899999887654432 22368999999999999999999999999999999999999987543221 2
Q ss_pred HHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 728 LEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 728 ~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
.+. +.++.. ....+.....+ ..+.++...|++.||++||++.|+++
T Consensus 216 ~~~----i~~~~~-~~~~~~~~~~~----~~~~~li~~~l~~dp~~Rps~~~~l~ 261 (304)
T 2jam_A 216 FEK----IKEGYY-EFESPFWDDIS----ESAKDFICHLLEKDPNERYTCEKALS 261 (304)
T ss_dssp HHH----HHHCCC-CCCTTTTTTSC----HHHHHHHHHHHCSSTTTSCCHHHHHT
T ss_pred HHH----HHcCCC-CCCccccccCC----HHHHHHHHHHcCCChhHCcCHHHHhc
Confidence 211 111111 11111111122 23555667999999999999999985
|
| >1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7 | Back alignment and structure |
|---|
Probab=99.20 E-value=2.8e-12 Score=140.99 Aligned_cols=131 Identities=15% Similarity=0.152 Sum_probs=85.1
Q ss_pred CCCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeec--CCCCchhHHHHHHHHHHHHHhcCCCCCC
Q 038019 641 SKPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMR--GHLTEKADVFSFGVVALEIISGRASSDK 718 (866)
Q Consensus 641 ~~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~--~~~t~ksDVySfGvvLlEl~tg~~p~~~ 718 (866)
...|++...+...++.|||.++.+....... .....||++|+|||++.+ ..++.++|||||||+++||+||+.|+..
T Consensus 186 kp~NIll~~~~~~kl~DfG~a~~~~~~~~~~-~~~~~gt~~y~aPE~~~~~~~~~~~~~DvwslG~il~ell~g~~pf~~ 264 (355)
T 1vzo_A 186 KLENILLDSNGHVVLTDFGLSKEFVADETER-AYDFCGTIEYMAPDIVRGGDSGHDKAVDWWSLGVLMYELLTGASPFTV 264 (355)
T ss_dssp CGGGEEECTTSCEEESCSSEEEECCGGGGGG-GCGGGSCCTTCCHHHHTTCC---CTHHHHHHHHHHHHHHHHSSCTTSC
T ss_pred CHHHEEECCCCcEEEeeCCCCeecccCCCCc-ccCcccCcCccChhhhcCCCCCCCchhhHHHHHHHHHHHHHCCCCCcc
Confidence 3347777777778899999988765432211 123468999999999875 4578999999999999999999999875
Q ss_pred CchhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCC-----CHHHHHHHH
Q 038019 719 SLDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRP-----PMSRVVAML 784 (866)
Q Consensus 719 ~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RP-----sm~~V~~~L 784 (866)
..... ............ .+.... .....+.+++.+|++.||++|| ++.|+++..
T Consensus 265 ~~~~~--~~~~~~~~~~~~-------~~~~~~---~~~~~~~~li~~~L~~dP~~R~~~~~~s~~ell~h~ 323 (355)
T 1vzo_A 265 DGEKN--SQAEISRRILKS-------EPPYPQ---EMSALAKDLIQRLLMKDPKKRLGCGPRDADEIKEHL 323 (355)
T ss_dssp TTSCC--CHHHHHHHHHHC-------CCCCCT---TSCHHHHHHHHHHTCSSGGGSTTSSTTTHHHHHTSG
T ss_pred CCccc--hHHHHHHHHhcc-------CCCCCc---ccCHHHHHHHHHHhhhCHHHhcCCCCCCHHHHHcCc
Confidence 33211 122222222111 111111 1112345566799999999999 888887644
|
| >2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=7.9e-12 Score=132.04 Aligned_cols=121 Identities=20% Similarity=0.313 Sum_probs=76.9
Q ss_pred CcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCC-CchhHHHHHHHHHHHHHhcCCCCCCCch
Q 038019 643 PNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHL-TEKADVFSFGVVALEIISGRASSDKSLD 721 (866)
Q Consensus 643 ~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~-t~ksDVySfGvvLlEl~tg~~p~~~~~~ 721 (866)
.|++...+...++.|||.+..+..+.. .....||..|+|||...+..+ +.++||||||++++||+||+.|++....
T Consensus 140 ~Nil~~~~~~~~l~dfg~~~~~~~~~~---~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~ 216 (276)
T 2h6d_A 140 ENVLLDAHMNAKIADFGLSNMMSDGEF---LRTSCGSPNYAAPEVISGRLYAGPEVDIWSCGVILYALLCGTLPFDDEHV 216 (276)
T ss_dssp GGEEECTTSCEEECCCCGGGCCCC----------------CCTGGGTTSCCCHHHHHHHHHHHHHHHHHHSSCSSCCSSH
T ss_pred hhEEECCCCCEEEeecccccccCCCcc---eecccCCccccCHHHHcCCCCCCccchHHHHHHHHHHHHhCCCCCCCCcH
Confidence 366666666778999999988876532 334568999999999887665 6899999999999999999999975432
Q ss_pred hhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 722 MEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 722 ~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
.. +.+. ...+.. .+..... ..+.++...|++.||++||++.||++
T Consensus 217 ~~---~~~~----~~~~~~------~~~~~~~---~~l~~li~~~l~~~p~~Rps~~~~l~ 261 (276)
T 2h6d_A 217 PT---LFKK----IRGGVF------YIPEYLN---RSVATLLMHMLQVDPLKRATIKDIRE 261 (276)
T ss_dssp HH---HHHH----HHHCCC------CCCTTSC---HHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred HH---HHHH----hhcCcc------cCchhcC---HHHHHHHHHHccCChhhCCCHHHHHh
Confidence 21 1111 111110 1111112 23455667999999999999999986
|
| >3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} SCOP: d.144.1.7 PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3u9c_A* 4fbx_A* 3mb7_A* 3mb6_A* ... | Back alignment and structure |
|---|
Probab=99.19 E-value=2.7e-12 Score=139.53 Aligned_cols=134 Identities=15% Similarity=0.101 Sum_probs=85.0
Q ss_pred CcccCHHHH-HHHhcCCccccccCCCCceeEEEeecCCCCccCceeeec-CCCCchhHHHHHHHHHHHHHhcCCCCCCCc
Q 038019 643 PNIFGYAEL-RSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMR-GHLTEKADVFSFGVVALEIISGRASSDKSL 720 (866)
Q Consensus 643 ~~~~~~~~~-~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~-~~~t~ksDVySfGvvLlEl~tg~~p~~~~~ 720 (866)
.|++...+. ..++.|||.++.+..+.. +....||..|+|||.+.. ..++.++|||||||+++||+||+.|+....
T Consensus 159 ~Nil~~~~~~~~kl~Dfg~a~~~~~~~~---~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~p~~~~~ 235 (330)
T 3nsz_A 159 HNVMIDHEHRKLRLIDWGLAEFYHPGQE---YNVRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGH 235 (330)
T ss_dssp GGEEEETTTTEEEECCCTTCEECCTTCC---CCSCCSCGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHTCSSSSCCS
T ss_pred HHEEEcCCCCEEEEEeCCCceEcCCCCc---cccccccccccChhhhcCCCcCCchhhHHHHHHHHHHHHhCCCCcccCC
Confidence 366655444 578999999988765432 334568999999999876 679999999999999999999999986433
Q ss_pred hhhhhcHHHHHH--------HHhhcCCcccccCCcc----------------c-ccCHHHHHHHHHHHHHccCCCCCCCC
Q 038019 721 DMEKIYLLEWAW--------NLHENNQSFGLVDPTL----------------T-EFNDKEALRVIGVALLCTQTSPMMRP 775 (866)
Q Consensus 721 ~~~~~~l~~~~~--------~~~~~~~~~~~~d~~l----------------~-~~~~~~~~~~~~la~~C~~~~p~~RP 775 (866)
... ..+..... ........ ..++.. . .........+.++...|++.||++||
T Consensus 236 ~~~-~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rp 312 (330)
T 3nsz_A 236 DNY-DQLVRIAKVLGTEDLYDYIDKYNI--ELDPRFNDILGRHSRKRWERFVHSENQHLVSPEALDFLDKLLRYDHQSRL 312 (330)
T ss_dssp SHH-HHHHHHHHHHCHHHHHHHHHHTTC--CCCTHHHHHHCCCCCCCGGGGCCTTTGGGCCHHHHHHHHTTSCSSGGGSC
T ss_pred chH-HHHHHHHHhcCCchhhhHHHHhcc--ccccchhhhhhhccccchhhhccccccccCCHHHHHHHHHHhcCCcccCC
Confidence 211 11111110 00110000 011100 0 00001123456667799999999999
Q ss_pred CHHHHHH
Q 038019 776 PMSRVVA 782 (866)
Q Consensus 776 sm~~V~~ 782 (866)
|+.|+++
T Consensus 313 ta~e~l~ 319 (330)
T 3nsz_A 313 TAREAME 319 (330)
T ss_dssp CHHHHHT
T ss_pred CHHHHhc
Confidence 9999975
|
| >3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A | Back alignment and structure |
|---|
Probab=99.19 E-value=1.1e-11 Score=136.48 Aligned_cols=126 Identities=17% Similarity=0.142 Sum_probs=72.6
Q ss_pred cccCHHHHH--HHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCch-hHHHHHHHHHHHHHhcCCCCCCCc
Q 038019 644 NIFGYAELR--SATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEK-ADVFSFGVVALEIISGRASSDKSL 720 (866)
Q Consensus 644 ~~~~~~~~~--~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~k-sDVySfGvvLlEl~tg~~p~~~~~ 720 (866)
|++...+.. .++.|||.++...... ......||+.|+|||.+.+..++.+ +|||||||+++||+||+.|+....
T Consensus 146 Nill~~~~~~~~kl~Dfg~a~~~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~ 222 (361)
T 3uc3_A 146 NTLLDGSPAPRLKICDFGYSKSSVLHS---QPKSTVGTPAYIAPEVLLRQEYDGKIADVWSCGVTLYVMLVGAYPFEDPE 222 (361)
T ss_dssp GEEECSSSSCCEEECCCCCC------------------CTTSCHHHHHCSSCCHHHHHHHHHHHHHHHHHHSSCSCC---
T ss_pred HEEEcCCCCceEEEeecCccccccccC---CCCCCcCCCCcCChhhhcCCCCCCCeeeeehhHHHHHHHHhCCCCCCCCc
Confidence 555443332 6789999887543322 2334579999999999988888766 899999999999999999997543
Q ss_pred hhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 721 DMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 721 ~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
... ............. . .. |.-.... ..+.++..+|++.+|++|||+.|+++
T Consensus 223 ~~~--~~~~~~~~~~~~~-~-~~--~~~~~~s----~~~~~li~~~L~~dP~~Rps~~ell~ 274 (361)
T 3uc3_A 223 EPR--DYRKTIQRILSVK-Y-SI--PDDIRIS----PECCHLISRIFVADPATRISIPEIKT 274 (361)
T ss_dssp -CC--CHHHHHHHHHTTC-C-CC--CTTSCCC----HHHHHHHHHHSCSCTTTSCCHHHHHT
T ss_pred cHH--HHHHHHHHHhcCC-C-CC--CCcCCCC----HHHHHHHHHHccCChhHCcCHHHHHh
Confidence 221 2222222222111 0 00 0000111 23455667999999999999999985
|
| >2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.19 E-value=5.6e-12 Score=141.01 Aligned_cols=129 Identities=21% Similarity=0.158 Sum_probs=84.0
Q ss_pred CCCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeee-------cCCCCchhHHHHHHHHHHHHHhcC
Q 038019 641 SKPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAM-------RGHLTEKADVFSFGVVALEIISGR 713 (866)
Q Consensus 641 ~~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~-------~~~~t~ksDVySfGvvLlEl~tg~ 713 (866)
...|++.+.+...++.|||.++.+...+. .......||++|||||++. .+.++.++|||||||+++||+||+
T Consensus 189 Kp~NILld~~g~vkL~DFGla~~~~~~~~-~~~~~~~Gt~~Y~APE~l~~~~~~~~~~~~~~~~DiwSlGvilyelltG~ 267 (412)
T 2vd5_A 189 KPDNILLDRCGHIRLADFGSCLKLRADGT-VRSLVAVGTPDYLSPEILQAVGGGPGTGSYGPECDWWALGVFAYEMFYGQ 267 (412)
T ss_dssp SGGGEEECTTSCEEECCCTTCEECCTTSC-EECSSCCSCGGGCCHHHHHHHHTCTTCSEECTHHHHHHHHHHHHHHHHSS
T ss_pred CHHHeeecCCCCEEEeechhheeccCCCc-cccceeccccCcCCHHHHhhcccCcCCCCCChHHhhhHHhHHHHHHHhCC
Confidence 33477777777889999999988865432 1122347999999999987 467899999999999999999999
Q ss_pred CCCCCCchhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCC---CCHHHHHH
Q 038019 714 ASSDKSLDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMR---PPMSRVVA 782 (866)
Q Consensus 714 ~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~R---Psm~~V~~ 782 (866)
.|+......+. ...+..... ...-|........+ +.++...|++ +|++| |++.||.+
T Consensus 268 ~Pf~~~~~~~~---~~~i~~~~~-----~~~~p~~~~~~s~~---~~dli~~lL~-~p~~Rlgr~~~~ei~~ 327 (412)
T 2vd5_A 268 TPFYADSTAET---YGKIVHYKE-----HLSLPLVDEGVPEE---ARDFIQRLLC-PPETRLGRGGAGDFRT 327 (412)
T ss_dssp CTTCCSSHHHH---HHHHHTHHH-----HCCCC----CCCHH---HHHHHHTTSS-CGGGCTTTTTHHHHHT
T ss_pred CCCCCCCHHHH---HHHHHhccc-----CcCCCccccCCCHH---HHHHHHHHcC-ChhhcCCCCCHHHHhc
Confidence 99976443221 111111000 01111111112233 3445558998 89888 68888864
|
| >3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B | Back alignment and structure |
|---|
Probab=99.19 E-value=4.2e-12 Score=146.50 Aligned_cols=124 Identities=19% Similarity=0.145 Sum_probs=85.0
Q ss_pred CCCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCCc
Q 038019 641 SKPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSL 720 (866)
Q Consensus 641 ~~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~ 720 (866)
...|++...+...++.|||.++.+..+.. ......||+.|||||.+.+..++.++|||||||+++||+||+.||....
T Consensus 316 KP~NILl~~~g~vkL~DFGla~~~~~~~~--~~~~~~GT~~Y~APE~l~~~~~~~~~DiwSlGvilyelltG~~PF~~~~ 393 (543)
T 3c4z_A 316 KPENVLLDDDGNVRISDLGLAVELKAGQT--KTKGYAGTPGFMAPELLLGEEYDFSVDYFALGVTLYEMIAARGPFRARG 393 (543)
T ss_dssp CGGGEEECTTSCEEECCCTTCEECCTTCC--CBCCCCSCTTTSCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCTT
T ss_pred ChHHEEEeCCCCEEEeecceeeeccCCCc--ccccccCCccccChhhhcCCCCChHHhcCcchHHHHHHHhCCCCCCCCc
Confidence 33477777777788999999998876542 2234579999999999999999999999999999999999999997543
Q ss_pred hhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHH
Q 038019 721 DMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMS 778 (866)
Q Consensus 721 ~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~ 778 (866)
... ...+....... +. ......... .+.++...|++.+|++||++.
T Consensus 394 ~~~--~~~~~~~~i~~-~~------~~~p~~~s~---~~~~li~~lL~~dP~~R~~~~ 439 (543)
T 3c4z_A 394 EKV--ENKELKQRVLE-QA------VTYPDKFSP---ASKDFCEALLQKDPEKRLGFR 439 (543)
T ss_dssp CCC--CHHHHHHHHHH-CC------CCCCTTSCH---HHHHHHHHHSCSSGGGSCCCB
T ss_pred cch--hHHHHHHHHhh-cc------cCCCcccCH---HHHHHHHHhccCCHhHCCCCc
Confidence 211 11111111111 11 111111122 344456699999999999864
|
| >2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.19 E-value=7.4e-12 Score=135.17 Aligned_cols=125 Identities=19% Similarity=0.212 Sum_probs=74.8
Q ss_pred CcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeee-----cCCCCchhHHHHHHHHHHHHHhcCCCCC
Q 038019 643 PNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAM-----RGHLTEKADVFSFGVVALEIISGRASSD 717 (866)
Q Consensus 643 ~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~-----~~~~t~ksDVySfGvvLlEl~tg~~p~~ 717 (866)
.|++...+...++.|||.+..+..+. ......||..|+|||.+. ...++.++|||||||+++||+||+.|+.
T Consensus 154 ~Nil~~~~~~~kl~dfg~~~~~~~~~---~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~ 230 (318)
T 2dyl_A 154 SNILLDERGQIKLCDFGISGRLVDDK---AKDRSAGCAAYMAPERIDPPDPTKPDYDIRADVWSLGISLVELATGQFPYK 230 (318)
T ss_dssp GGEEECTTSCEEECCCTTC-----------------CCTTCCHHHHC--------CCTHHHHHHHHHHHHHHHHSSCTTT
T ss_pred HHEEECCCCCEEEEECCCchhccCCc---cccccCCCccccChhhcccccccccCCccccchhhHHHHHHHHHhCCCCCC
Confidence 46666666678899999988775532 233456899999999984 5678999999999999999999999987
Q ss_pred CCchhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 718 KSLDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 718 ~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
...... ... ....... ... .+.....+ ..+.+++..|++.||.+||++.||++
T Consensus 231 ~~~~~~--~~~---~~~~~~~-~~~--~~~~~~~~----~~l~~li~~~l~~dp~~Rps~~~ll~ 283 (318)
T 2dyl_A 231 NCKTDF--EVL---TKVLQEE-PPL--LPGHMGFS----GDFQSFVKDCLTKDHRKRPKYNKLLE 283 (318)
T ss_dssp TCCSHH--HHH---HHHHHSC-CCC--CCSSSCCC----HHHHHHHHHHTCSCTTTSCCHHHHTT
T ss_pred CCCccH--HHH---HHHhccC-CCC--CCccCCCC----HHHHHHHHHHccCChhHCcCHHHHhh
Confidence 532211 111 1111111 000 01001112 23455666999999999999999875
|
| >3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=4.7e-12 Score=133.89 Aligned_cols=121 Identities=15% Similarity=0.165 Sum_probs=82.1
Q ss_pred cccC---HHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCCc
Q 038019 644 NIFG---YAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSL 720 (866)
Q Consensus 644 ~~~~---~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~ 720 (866)
|++. ..+...++.|||.+..+..+.. .....||.+|+|||... +.++.++||||||++++||+||+.|+....
T Consensus 136 Nil~~~~~~~~~~~l~Dfg~~~~~~~~~~---~~~~~~t~~y~aPE~~~-~~~~~~~Di~slG~~l~~l~~g~~p~~~~~ 211 (277)
T 3f3z_A 136 NFLFLTDSPDSPLKLIDFGLAARFKPGKM---MRTKVGTPYYVSPQVLE-GLYGPECDEWSAGVMMYVLLCGYPPFSAPT 211 (277)
T ss_dssp GEEESSSSTTCCEEECCCTTCEECCTTSC---BCCCCSCTTTCCHHHHT-TCBCTTHHHHHHHHHHHHHHHSSCSSCCSS
T ss_pred HEEEecCCCCCcEEEEecccceeccCccc---hhccCCCCCccChHHhc-ccCCchhhehhHHHHHHHHHHCCCCCCCCC
Confidence 5554 4455668899999987765432 23456899999999875 459999999999999999999999997644
Q ss_pred hhhhhcHHHHHHHHhhcCCcccccCCcc--cccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 721 DMEKIYLLEWAWNLHENNQSFGLVDPTL--TEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 721 ~~~~~~l~~~~~~~~~~~~~~~~~d~~l--~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
..+ ... ....+.. ..|.. ... ...+.++...|++.+|++||++.|+++
T Consensus 212 ~~~---~~~----~~~~~~~---~~~~~~~~~~----~~~~~~li~~~l~~dp~~R~s~~~~l~ 261 (277)
T 3f3z_A 212 DSE---VML----KIREGTF---TFPEKDWLNV----SPQAESLIRRLLTKSPKQRITSLQALE 261 (277)
T ss_dssp HHH---HHH----HHHHCCC---CCCHHHHTTS----CHHHHHHHHHHTCSSTTTSCCHHHHTT
T ss_pred HHH---HHH----HHHhCCC---CCCchhhhcC----CHHHHHHHHHHccCChhhCcCHHHHhc
Confidence 322 111 1111111 00100 011 234556667999999999999999874
|
| >2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A | Back alignment and structure |
|---|
Probab=99.18 E-value=1e-12 Score=141.94 Aligned_cols=125 Identities=14% Similarity=0.149 Sum_probs=73.4
Q ss_pred HHhcCCccccccCCCCcee-----EEEeecCCCCccCceeeec-----CCCCchhHHHHHHHHHHHHHhcCCCCCCCchh
Q 038019 653 SATKDFNRSNKLGEGGYGP-----VYKVTANSYGYLAPEYAMR-----GHLTEKADVFSFGVVALEIISGRASSDKSLDM 722 (866)
Q Consensus 653 ~~~~dF~~~~~lg~g~~g~-----vy~~~~gt~gY~aPE~~~~-----~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~~ 722 (866)
.++.|||.+..+...+... ......||..|+|||.+.. ..++.++|||||||+++||+||+.|+......
T Consensus 153 ~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~ 232 (316)
T 2ac3_A 153 VKICDFDLGSGIKLNGDCSPISTPELLTPCGSAEYMAPEVVEAFSEEASIYDKRCDLWSLGVILYILLSGYPPFVGRCGS 232 (316)
T ss_dssp EEECCTTCCC-------------------CCSGGGCCHHHHHHTSHHHHHHTTTHHHHHHHHHHHHHHHSSCSCCCCCCS
T ss_pred eEEEEccCccccccCCccccccccccccccCCcCccChHHhhcccccccCCCcccccHhHHHHHHHHHHCCCCCcccccc
Confidence 5788999888765432211 1223469999999999875 56899999999999999999999999754321
Q ss_pred hhhc--------HHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 723 EKIY--------LLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 723 ~~~~--------l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
+... ...........+.. ...++..... ...+.++..+|++.||++|||+.|+++
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~----~~~~~~li~~~L~~dP~~Rps~~e~l~ 295 (316)
T 2ac3_A 233 DCGWDRGEACPACQNMLFESIQEGKY-EFPDKDWAHI----SCAAKDLISKLLVRDAKQRLSAAQVLQ 295 (316)
T ss_dssp CSCC----CCHHHHHHHHHHHHHCCC-CCCHHHHTTS----CHHHHHHHHHHSCSSTTTSCCHHHHHH
T ss_pred cccccccccchhHHHHHHHHHhccCc-ccCchhcccC----CHHHHHHHHHHhhCChhhCCCHHHHhc
Confidence 1000 00011111111111 0000000011 124556777999999999999999986
|
| >3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II} | Back alignment and structure |
|---|
Probab=99.18 E-value=1.2e-11 Score=137.49 Aligned_cols=134 Identities=19% Similarity=0.171 Sum_probs=86.0
Q ss_pred CcccCH-HHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecC-CCCchhHHHHHHHHHHHHHhcCCCCCCCc
Q 038019 643 PNIFGY-AELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRG-HLTEKADVFSFGVVALEIISGRASSDKSL 720 (866)
Q Consensus 643 ~~~~~~-~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~-~~t~ksDVySfGvvLlEl~tg~~p~~~~~ 720 (866)
.|++.. .+...++.|||.++.+..+.... ...||..|+|||.+.+. .++.++|||||||+++||++|+.|+....
T Consensus 170 ~Nil~~~~~~~~kl~Dfg~a~~~~~~~~~~---~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~ 246 (383)
T 3eb0_A 170 QNLLVNSKDNTLKLCDFGSAKKLIPSEPSV---AYICSRFYRAPELMLGATEYTPSIDLWSIGCVFGELILGKPLFSGET 246 (383)
T ss_dssp GGEEEETTTTEEEECCCTTCEECCTTSCCC---CCCCCSSCCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSS
T ss_pred HHEEEcCCCCcEEEEECCCCcccCCCCCCc---CcccCCCccCHHHhcCCCCCCcchhhhhHHHHHHHHHhCCCCCCCCC
Confidence 366654 45667899999998876554322 33579999999988764 59999999999999999999999998654
Q ss_pred hhhhhcHHHHHHHHhhc----------CCcccccCCcccc------cCHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 721 DMEKIYLLEWAWNLHEN----------NQSFGLVDPTLTE------FNDKEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 721 ~~~~~~l~~~~~~~~~~----------~~~~~~~d~~l~~------~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
..+. +...+. .... ....+..-|.+.. .+......+.++...|++.+|++|||+.|+++
T Consensus 247 ~~~~--~~~i~~-~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~ 321 (383)
T 3eb0_A 247 SIDQ--LVRIIQ-IMGTPTKEQMIRMNPHYTEVRFPTLKAKDWRKILPEGTPSLAIDLLEQILRYEPDLRINPYEAMA 321 (383)
T ss_dssp HHHH--HHHHHH-HHCCCCHHHHHHHCTTC--CCCCCCCCCCHHHHSCTTCCHHHHHHHHHHCCSSGGGSCCHHHHHT
T ss_pred hHHH--HHHHHH-HhCCCCHHHHHHhCcccccccCCccCcccHHhhCCCCCCHHHHHHHHHHccCChhhCCCHHHHhc
Confidence 3322 111111 1000 0001111111100 11111234566777999999999999999874
|
| >3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ... | Back alignment and structure |
|---|
Probab=99.18 E-value=4.5e-12 Score=137.27 Aligned_cols=114 Identities=17% Similarity=0.247 Sum_probs=81.9
Q ss_pred CcccCH-HHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCC-CchhHHHHHHHHHHHHHhcCCCCCCCc
Q 038019 643 PNIFGY-AELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHL-TEKADVFSFGVVALEIISGRASSDKSL 720 (866)
Q Consensus 643 ~~~~~~-~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~-t~ksDVySfGvvLlEl~tg~~p~~~~~ 720 (866)
.|++.. .+...++.|||.++.+..... ....||.+|+|||++....+ +.++|||||||+++||+||+.|+....
T Consensus 178 ~NIll~~~~~~~kL~Dfg~~~~~~~~~~----~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~ 253 (320)
T 3a99_A 178 ENILIDLNRGELKLIDFGSGALLKDTVY----TDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHDE 253 (320)
T ss_dssp GGEEEETTTTEEEECCCTTCEECCSSCB----CCCCSCGGGSCHHHHHHSCBCHHHHHHHHHHHHHHHHHHSSCSCCSHH
T ss_pred HHEEEeCCCCCEEEeeCccccccccccc----cCCCCCccCCChHHhccCCCCCccchHHhHHHHHHHHHHCCCCCCChh
Confidence 366665 456778999999988875433 34568999999999887766 688999999999999999999986421
Q ss_pred hhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 721 DMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 721 ~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
. . .. +.. ...+ ..+ ..+.+++.+|++.||++||++.||++
T Consensus 254 ~-----~-------~~-~~~--~~~~---~~~----~~~~~li~~~l~~dp~~Rps~~~ll~ 293 (320)
T 3a99_A 254 E-----I-------IR-GQV--FFRQ---RVS----SECQHLIRWCLALRPSDRPTFEEIQN 293 (320)
T ss_dssp H-----H-------HH-CCC--CCSS---CCC----HHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred h-----h-------hc-ccc--cccc---cCC----HHHHHHHHHHccCChhhCcCHHHHhc
Confidence 0 0 00 100 0111 112 23455667999999999999999976
|
| >3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=7.3e-12 Score=141.59 Aligned_cols=77 Identities=17% Similarity=0.175 Sum_probs=55.0
Q ss_pred CCCCcccCHHHHHHHhcCCccccccCCCCce--------------------eEEEeecCCCCccCceee-ecCCCCchhH
Q 038019 640 GSKPNIFGYAELRSATKDFNRSNKLGEGGYG--------------------PVYKVTANSYGYLAPEYA-MRGHLTEKAD 698 (866)
Q Consensus 640 ~~~~~~~~~~~~~~~~~dF~~~~~lg~g~~g--------------------~vy~~~~gt~gY~aPE~~-~~~~~t~ksD 698 (866)
....|++...+...++.|||.++.+...... ......+||..|+|||.+ ....++.++|
T Consensus 155 lkp~NILl~~~~~~kL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~~~~~~~~~~~~D 234 (432)
T 3n9x_A 155 LKPANCLLNQDCSVKVCDFGLARTINSEKDTNIVNDLEENEEPGPHNKNLKKQLTSHVVTRWYRAPELILLQENYTKSID 234 (432)
T ss_dssp CCGGGEEECTTCCEEECCCTTCEEC-------------------------------CCCCCTTCCHHHHTTCSCCCTHHH
T ss_pred CCHHHeEECCCCCEEEccCCCcccccccccccccccccccccccccccchhccccCCCCCccccCHHHHhcCCCCCcccc
Confidence 3334777777777889999999988654322 223456799999999986 5667999999
Q ss_pred HHHHHHHHHHHHhcCCCC
Q 038019 699 VFSFGVVALEIISGRASS 716 (866)
Q Consensus 699 VySfGvvLlEl~tg~~p~ 716 (866)
|||+||+++||+||..|+
T Consensus 235 iwSlG~il~ell~g~~p~ 252 (432)
T 3n9x_A 235 IWSTGCIFAELLNMLQSH 252 (432)
T ss_dssp HHHHHHHHHHHHTTCTTT
T ss_pred cchHHHHHHHHHhccccc
Confidence 999999999999865544
|
| >3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3v01_A* 3v04_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* ... | Back alignment and structure |
|---|
Probab=99.18 E-value=5.5e-12 Score=138.98 Aligned_cols=74 Identities=22% Similarity=0.278 Sum_probs=58.9
Q ss_pred CcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCCc
Q 038019 643 PNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSL 720 (866)
Q Consensus 643 ~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~ 720 (866)
.|++...+...++.|||.+..+.... .....||.+|+|||.+.+..++.++|||||||+++||+||+.|+....
T Consensus 161 ~Nil~~~~~~~kl~Dfg~~~~~~~~~----~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~ 234 (360)
T 3eqc_A 161 SNILVNSRGEIKLCDFGVSGQLIDSM----ANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGRYPIPPPD 234 (360)
T ss_dssp GGEEECTTCCEEECCCCCCHHHHHHC--------CCCCTTCCHHHHTTCCCSHHHHHHHHHHHHHHHHHTSCCSSCCC
T ss_pred HHEEECCCCCEEEEECCCCccccccc----ccCCCCCCCeECHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCC
Confidence 36666666677899999887664322 233468999999999999999999999999999999999999997644
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.18 E-value=5.3e-13 Score=147.25 Aligned_cols=134 Identities=11% Similarity=0.062 Sum_probs=62.6
Q ss_pred CCCCEEEccCCCCCCCCCcccc-----CCCCcCEEeccCCcCCCCCCccc-cCCCCCCEeeccCCCCCCCCchhh-----
Q 038019 89 QYLTVLKIDQNFFTGPLPSFIG-----NLSRLMFLSFSHNDFSGPVPREL-GNLKELTVLAFGTNNFSGALPPEL----- 157 (866)
Q Consensus 89 ~~L~~L~Ls~n~l~~~~p~~l~-----~l~~L~~L~Ls~N~l~~~~p~~l-~~l~~L~~L~Ls~N~l~~~~p~~l----- 157 (866)
+.|+.|+|++|.++......|. +.++|++|+|++|.++......+ ..+++|++|+|++|.++......+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 4566666666666543222222 22466666666666643222222 223455666666665543322222
Q ss_pred cCCCCccEEEeecCCCCCC----ChhhhhcCcCCCEEEecCCCCCCC----CcccccCCCCCCeEEccCCCCC
Q 038019 158 GNLAKLEQLYIDSCGAGGE----IPSTFAKLRNMQTLWASDNPFTGK----IPDFIGNWTKLKSLRFQGNSFQ 222 (866)
Q Consensus 158 ~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~----~p~~l~~l~~L~~L~L~~N~l~ 222 (866)
...++|++|+|++|.++.. ++..+..+++|++|+|++|.+++. ++..+...++|+.|+|++|.++
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~ 224 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAG 224 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCC
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCC
Confidence 1244555555555555431 223334445555555555554421 1233333444444444444443
|
| >3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=8.5e-12 Score=136.06 Aligned_cols=119 Identities=16% Similarity=0.192 Sum_probs=59.4
Q ss_pred HHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCCchhhhhcHHHHH
Q 038019 652 RSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSLDMEKIYLLEWA 731 (866)
Q Consensus 652 ~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~~~~~~l~~~~ 731 (866)
..++.|||.++...... .....||.+|+|||++....++.++||||||++++||+||+.|+....... .....
T Consensus 169 ~~kl~Dfg~~~~~~~~~----~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~---~~~~~ 241 (336)
T 3fhr_A 169 VLKLTDFGFAKETTQNA----LQTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGFPPFYSNTGQA---ISPGM 241 (336)
T ss_dssp CEEECCCTTCEEC--------------------------CHHHHHHHHHHHHHHHHHHHHSSCCC---------------
T ss_pred eEEEeccccceeccccc----cccCCCCcCccChhhhCCCCCCchhhHHHHHHHHHHHHHCCCCCCCccchh---hhhhH
Confidence 36789999988776432 234568999999999999999999999999999999999999986533211 10000
Q ss_pred HHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 732 WNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 732 ~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
......+.. ....+..... ...+.++...|++.||++|||+.|+++
T Consensus 242 ~~~~~~~~~-~~~~~~~~~~----~~~~~~li~~~L~~dP~~Rpt~~ell~ 287 (336)
T 3fhr_A 242 KRRIRLGQY-GFPNPEWSEV----SEDAKQLIRLLLKTDPTERLTITQFMN 287 (336)
T ss_dssp ----------CCCTTTSTTC----CHHHHHHHHHHSCSSGGGSCCHHHHHH
T ss_pred HHhhhcccc-ccCchhhccC----CHHHHHHHHHHCCCChhHCcCHHHHhc
Confidence 010000000 0111111112 223455667999999999999999987
|
| >2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.16 E-value=2e-12 Score=139.75 Aligned_cols=137 Identities=14% Similarity=0.159 Sum_probs=82.5
Q ss_pred CcccCH-HHHHHHhcCCccccccCCCCc-eeEEEeecCCCCccCceeeec-CCCCchhHHHHHHHHHHHHHhcCCCCCCC
Q 038019 643 PNIFGY-AELRSATKDFNRSNKLGEGGY-GPVYKVTANSYGYLAPEYAMR-GHLTEKADVFSFGVVALEIISGRASSDKS 719 (866)
Q Consensus 643 ~~~~~~-~~~~~~~~dF~~~~~lg~g~~-g~vy~~~~gt~gY~aPE~~~~-~~~t~ksDVySfGvvLlEl~tg~~p~~~~ 719 (866)
.|++.. ++...++.|||.++.++.... ........+|..|+|||.... ..++.++|||||||+++||+||+.|+...
T Consensus 149 ~Nil~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~ 228 (320)
T 2i6l_A 149 ANLFINTEDLVLKIGDFGLARIMDPHYSHKGHLSEGLVTKWYRSPRLLLSPNNYTKAIDMWAAGCIFAEMLTGKTLFAGA 228 (320)
T ss_dssp GGEEEETTTTEEEECCCTTCBCC--------CCCGGGSCCTTCCHHHHHCTTCCCHHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred HHEEEcCCCCeEEEccCccccccCCCcccccccccccccccccCcHHhcCcccCCchhhhHhHHHHHHHHHhCCCCCCCC
Confidence 366654 455678999999988753211 111123357899999998765 78999999999999999999999999865
Q ss_pred chhhhhcHHHHHHHHhhc----------CCcc-----cccCCcc--cccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 720 LDMEKIYLLEWAWNLHEN----------NQSF-----GLVDPTL--TEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 720 ~~~~~~~l~~~~~~~~~~----------~~~~-----~~~d~~l--~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
...+. ...+...... .... ....+.. ..........+.++...|++.||++||++.|+++
T Consensus 229 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~ 305 (320)
T 2i6l_A 229 HELEQ---MQLILESIPVVHEEDRQELLSVIPVYIRNDMTEPHKPLTQLLPGISREAVDFLEQILTFSPMDRLTAEEALS 305 (320)
T ss_dssp SHHHH---HHHHHHHSCCCCHHHHHHHHTTSCHHHHHHTTSCCCCHHHHSTTCCHHHHHHHHTTSCSSGGGSCCHHHHHT
T ss_pred CHHHH---HHHHHHhcCCCchhhhhhhhhcCcccccccccCCCCChhHhcchhhHHHHHHHHHHcCCCccccCCHHHHhC
Confidence 43221 1111110000 0000 0000100 0000111234566777999999999999999975
|
| >1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=5.6e-12 Score=133.86 Aligned_cols=107 Identities=12% Similarity=0.166 Sum_probs=73.9
Q ss_pred HHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecC-CCCchhHHHHHHHHHHHHHhcCCCCCCCchhhhhcHHHH
Q 038019 652 RSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRG-HLTEKADVFSFGVVALEIISGRASSDKSLDMEKIYLLEW 730 (866)
Q Consensus 652 ~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~-~~t~ksDVySfGvvLlEl~tg~~p~~~~~~~~~~~l~~~ 730 (866)
..++.|||.+..++.... ..||..|+|||.+... .++.++|||||||+++||++|+.+..... ..
T Consensus 172 ~~kl~Dfg~~~~~~~~~~------~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~~~~~~~~~~------~~-- 237 (289)
T 1x8b_A 172 MFKIGDLGHVTRISSPQV------EEGDSRFLANEVLQENYTHLPKADIFALALTVVCAAGAEPLPRNGD------QW-- 237 (289)
T ss_dssp CEEECCCTTCEETTCSCC------CCCCGGGCCHHHHTTCCTTHHHHHHHHHHHHHHHHTTCCCCCSSSH------HH--
T ss_pred EEEEcccccccccCCccc------cCCCccccChhHhcCCCCCCchhhHHHHHHHHHHHhcCCCCCcchh------HH--
Confidence 357889998887765432 3589999999998765 66789999999999999999987754221 11
Q ss_pred HHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 731 AWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 731 ~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
.....+.. +.+.....+ .+.++...|++.||++||++.|+++
T Consensus 238 --~~~~~~~~-----~~~~~~~~~---~~~~li~~~l~~dp~~Rps~~~ll~ 279 (289)
T 1x8b_A 238 --HEIRQGRL-----PRIPQVLSQ---EFTELLKVMIHPDPERRPSAMALVK 279 (289)
T ss_dssp --HHHHTTCC-----CCCSSCCCH---HHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred --HHHHcCCC-----CCCCcccCH---HHHHHHHHHhCCCcccCCCHHHHhh
Confidence 11112211 222211222 3455666999999999999999875
|
| >3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=1.5e-11 Score=141.20 Aligned_cols=117 Identities=20% Similarity=0.240 Sum_probs=79.1
Q ss_pred HHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCCchhhhhcHHH
Q 038019 650 ELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSLDMEKIYLLE 729 (866)
Q Consensus 650 ~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~~~~~~l~~ 729 (866)
+...++.|||.++.+..+. ......||++|+|||.+. +.++.++||||+||+++||+||+.|+......+ +..
T Consensus 160 ~~~~kl~Dfg~a~~~~~~~---~~~~~~gt~~y~aPE~~~-~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~---~~~ 232 (486)
T 3mwu_A 160 DCDIKIIDFGLSTCFQQNT---KMKDRIGTAYYIAPEVLR-GTYDEKCDVWSAGVILYILLSGTPPFYGKNEYD---ILK 232 (486)
T ss_dssp TCCEEECSCSCTTTBCCC-------CCTTGGGGCCGGGGG-SCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHHH---HHH
T ss_pred CCCEEEEECCcCeECCCCC---ccCCCcCCCCCCCHHHhC-CCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHH---HHH
Confidence 3446789999998876542 344567999999999886 469999999999999999999999997543322 221
Q ss_pred HHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 730 WAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 730 ~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
.+ ..+... .-.|...... + .+.++...|++.+|++|||+.|+++
T Consensus 233 ~i----~~~~~~-~~~~~~~~~s-~---~~~~li~~~L~~dp~~R~t~~~~l~ 276 (486)
T 3mwu_A 233 RV----ETGKYA-FDLPQWRTIS-D---DAKDLIRKMLTFHPSLRITATQCLE 276 (486)
T ss_dssp HH----HHTCCC-SCSGGGGGSC-H---HHHHHHHHHTCSSTTTSCCHHHHHH
T ss_pred HH----HhCCCC-CCCcccCCCC-H---HHHHHHHHHcCCChhhCcCHHHHhc
Confidence 11 111110 0011111122 2 3445666999999999999999986
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=99.15 E-value=5.6e-11 Score=130.13 Aligned_cols=103 Identities=19% Similarity=0.182 Sum_probs=64.0
Q ss_pred EEEccCC-CCCCCCCccccCCCCcCEEeccC-CcCCCCCCccccCCCCCCEeeccCCCCCCCCchhhcCCCCccEEEeec
Q 038019 93 VLKIDQN-FFTGPLPSFIGNLSRLMFLSFSH-NDFSGPVPRELGNLKELTVLAFGTNNFSGALPPELGNLAKLEQLYIDS 170 (866)
Q Consensus 93 ~L~Ls~n-~l~~~~p~~l~~l~~L~~L~Ls~-N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~ 170 (866)
.++++++ .|+ .+|. |..+++|++|+|++ |.|++..+..|.+|++|++|+|++|+|++..|..|.+|++|+.|+|++
T Consensus 12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 3566666 666 3565 77777777777774 777666666666666777777766666666666666666666666666
Q ss_pred CCCCCCChhhhhcCcCCCEEEecCCCCC
Q 038019 171 CGAGGEIPSTFAKLRNMQTLWASDNPFT 198 (866)
Q Consensus 171 n~l~~~~p~~~~~l~~L~~L~L~~N~l~ 198 (866)
|+|++..+..|..++ |+.|+|.+|.+.
T Consensus 90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 90 NALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp SCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred CccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 666554444444443 555555555544
|
| >2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X* | Back alignment and structure |
|---|
Probab=99.14 E-value=8.5e-12 Score=136.66 Aligned_cols=131 Identities=16% Similarity=0.193 Sum_probs=86.7
Q ss_pred CCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecC-CCCc-hhHHHHHHHHHHHHHhcCCCCCCC
Q 038019 642 KPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRG-HLTE-KADVFSFGVVALEIISGRASSDKS 719 (866)
Q Consensus 642 ~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~-~~t~-ksDVySfGvvLlEl~tg~~p~~~~ 719 (866)
..|++...+...++.|||.+..+..+ ......||..|+|||..... .++. ++||||||++++||+||+.|+...
T Consensus 180 p~Nil~~~~~~~kl~dfg~~~~~~~~----~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~ 255 (348)
T 2pml_X 180 PSNILMDKNGRVKLSDFGESEYMVDK----KIKGSRGTYEFMPPEFFSNESSYNGAKVDIWSLGICLYVMFYNVVPFSLK 255 (348)
T ss_dssp GGGEEECTTSCEEECCCTTCEECBTT----EECSSCSCGGGCCGGGGSSCCCEEHHHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred hHhEEEcCCCcEEEeccccccccccc----cccCCCCCcCccCchhhcCCCCCCcchhhHHHHHHHHHHHHhCCCCCCCC
Confidence 34677666677889999999887654 23445789999999999877 6666 999999999999999999999754
Q ss_pred chhhhhcHHHHHHHHhhcCCccc------ccCCccc----ccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 720 LDMEKIYLLEWAWNLHENNQSFG------LVDPTLT----EFNDKEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 720 ~~~~~~~l~~~~~~~~~~~~~~~------~~d~~l~----~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
... ..+.+.+ ..+...- ...+... .........+.++...|++.||++||++.|+++
T Consensus 256 ~~~--~~~~~~i----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rps~~e~l~ 322 (348)
T 2pml_X 256 ISL--VELFNNI----RTKNIEYPLDRNHFLYPLTNKKSTCSNNFLSNEDIDFLKLFLRKNPAERITSEDALK 322 (348)
T ss_dssp SCS--HHHHHHH----TSCCCCCCCSSSSSTTTTCC--------CCCHHHHHHHHHHCCSSGGGSCCHHHHHT
T ss_pred CcH--HHHHHHH----hccCcCCccchhhhhccccccccccchhhcCHHHHHHHHHHccCChhhCCCHHHHhc
Confidence 331 1122221 1111100 0000000 000111234566777999999999999999976
|
| >3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=1.1e-11 Score=142.63 Aligned_cols=115 Identities=20% Similarity=0.227 Sum_probs=79.0
Q ss_pred HHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCCchhhhhcHHHHH
Q 038019 652 RSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSLDMEKIYLLEWA 731 (866)
Q Consensus 652 ~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~~~~~~l~~~~ 731 (866)
..++.|||.+..+..+. ......||+.|+|||.+. +.++.++||||+||+++||++|+.|+......+ +...+
T Consensus 177 ~~kl~DfG~a~~~~~~~---~~~~~~gt~~y~aPE~l~-~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~---~~~~i 249 (494)
T 3lij_A 177 LIKIVDFGLSAVFENQK---KMKERLGTAYYIAPEVLR-KKYDEKCDVWSIGVILFILLAGYPPFGGQTDQE---ILRKV 249 (494)
T ss_dssp CEEECCCTTCEECBTTB---CBCCCCSCTTTCCHHHHT-TCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHH---HHHHH
T ss_pred cEEEEECCCCeECCCCc---cccccCCCcCeeCHHHHc-ccCCCchhHHHHHHHHHHHHhCCCCCCCCCHHH---HHHHH
Confidence 35789999998876543 233457999999999875 679999999999999999999999997644322 22111
Q ss_pred HHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 732 WNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 732 ~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
..+.. ....+...... + .+.++...|++.+|.+|||+.|+++
T Consensus 250 ----~~~~~-~~~~~~~~~~s-~---~~~~li~~~L~~dp~~R~s~~e~l~ 291 (494)
T 3lij_A 250 ----EKGKY-TFDSPEWKNVS-E---GAKDLIKQMLQFDSQRRISAQQALE 291 (494)
T ss_dssp ----HHTCC-CCCSGGGTTSC-H---HHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred ----HhCCC-CCCchhcccCC-H---HHHHHHHHHCCCChhhCccHHHHhc
Confidence 11111 01111111122 2 3445666999999999999999874
|
| >2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=4.7e-12 Score=137.17 Aligned_cols=116 Identities=18% Similarity=0.232 Sum_probs=78.8
Q ss_pred HHhcCCccccccCCCCceeEEEeecCCCCccCceeee---cCCCCchhHHHHHHHHHHHHHhcCCCCCCCchhhhhcHHH
Q 038019 653 SATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAM---RGHLTEKADVFSFGVVALEIISGRASSDKSLDMEKIYLLE 729 (866)
Q Consensus 653 ~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~---~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~~~~~~l~~ 729 (866)
.++.|||.++.++.... .....||..|+|||.+. ...++.++|||||||+++||+||+.|+...... ..+..
T Consensus 156 ~kl~Dfg~~~~~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~--~~~~~ 230 (322)
T 2ycf_A 156 IKITDFGHSKILGETSL---MRTLCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICLSGYPPFSEHRTQ--VSLKD 230 (322)
T ss_dssp EEECCCTTCEECCCCHH---HHHHHSCCTTCCHHHHHHTTTTTCTTHHHHHHHHHHHHHHHHSSCSSCSTTCS--SCHHH
T ss_pred EEEccCccceecccccc---cccccCCcCccCchhhccCCCCCCCchhhHHHHHHHHHHHHhCCCCCcccchH--HHHHH
Confidence 67889999988765432 22346899999999874 567899999999999999999999998754321 12222
Q ss_pred HHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 730 WAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 730 ~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
.+.. +... ..+.... .....+.+++..|++.||++||++.|+++
T Consensus 231 ~~~~----~~~~--~~~~~~~---~~~~~~~~li~~~l~~dP~~Rps~~~~l~ 274 (322)
T 2ycf_A 231 QITS----GKYN--FIPEVWA---EVSEKALDLVKKLLVVDPKARFTTEEALR 274 (322)
T ss_dssp HHHH----TCCC--CCHHHHT---TSCHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred HHHh----Cccc--cCchhhh---hcCHHHHHHHHHHcccCHhhCCCHHHHhh
Confidence 2211 1110 0111100 11234556777999999999999999874
|
| >2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=5.3e-12 Score=135.30 Aligned_cols=125 Identities=17% Similarity=0.167 Sum_probs=78.4
Q ss_pred CcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeee-----cCCCCchhHHHHHHHHHHHHHhcCCCCC
Q 038019 643 PNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAM-----RGHLTEKADVFSFGVVALEIISGRASSD 717 (866)
Q Consensus 643 ~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~-----~~~~t~ksDVySfGvvLlEl~tg~~p~~ 717 (866)
.|++...+...++.|||.+....... .......||..|+|||++. ...++.++||||||++++||+||+.|+.
T Consensus 146 ~Nil~~~~~~~kl~Dfg~~~~~~~~~--~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~ 223 (302)
T 2j7t_A 146 GNVLMTLEGDIRLADFGVSAKNLKTL--QKRDSFIGTPYWMAPEVVMCETMKDTPYDYKADIWSLGITLIEMAQIEPPHH 223 (302)
T ss_dssp GGEEECTTSCEEECCCHHHHHHHHHH--HC-----CCGGGCCHHHHHHHHTTSTTTTTHHHHHHHHHHHHHHHHSSCTTT
T ss_pred HHEEECCCCCEEEEECCCCccccccc--cccccccCChhhcCCeeeccccCCCCCCchhhhHHHHHHHHHHHhcCCCCCc
Confidence 36666555567788898765432111 1122346899999999883 6778999999999999999999999987
Q ss_pred CCchhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 718 KSLDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 718 ~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
...... ......... ...... ..... ..+.++...|++.+|++|||+.|+++
T Consensus 224 ~~~~~~------~~~~~~~~~-~~~~~~---~~~~~---~~l~~li~~~l~~dp~~Rps~~~ll~ 275 (302)
T 2j7t_A 224 ELNPMR------VLLKIAKSD-PPTLLT---PSKWS---VEFRDFLKIALDKNPETRPSAAQLLE 275 (302)
T ss_dssp TSCHHH------HHHHHHHSC-CCCCSS---GGGSC---HHHHHHHHHHSCSCTTTSCCHHHHTT
T ss_pred cCCHHH------HHHHHhccC-CcccCC---ccccC---HHHHHHHHHHcccChhhCCCHHHHhc
Confidence 543321 111111111 101100 11111 23455667999999999999999864
|
| >2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.13 E-value=2.2e-11 Score=131.16 Aligned_cols=114 Identities=18% Similarity=0.276 Sum_probs=81.4
Q ss_pred CcccCH-HHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCC-chhHHHHHHHHHHHHHhcCCCCCCCc
Q 038019 643 PNIFGY-AELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLT-EKADVFSFGVVALEIISGRASSDKSL 720 (866)
Q Consensus 643 ~~~~~~-~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t-~ksDVySfGvvLlEl~tg~~p~~~~~ 720 (866)
.|++.. .+...++.|||.+..+....+ ....||.+|+|||++....+. .++||||||++++||+||+.|+....
T Consensus 168 ~Nil~~~~~~~~kl~dfg~~~~~~~~~~----~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~ 243 (312)
T 2iwi_A 168 ENILIDLRRGCAKLIDFGSGALLHDEPY----TDFDGTRVYSPPEWISRHQYHALPATVWSLGILLYDMVCGDIPFERDQ 243 (312)
T ss_dssp GGEEEETTTTEEEECCCSSCEECCSSCB----CCCCSCTTTSCHHHHHHSCBCHHHHHHHHHHHHHHHHHHSSCSCCSHH
T ss_pred hhEEEeCCCCeEEEEEcchhhhcccCcc----cccCCcccccCceeeecCCCCCccchHHHHHHHHHHHHHCCCCCCChH
Confidence 356655 556678999999988876543 345689999999998877664 59999999999999999999986321
Q ss_pred hhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 721 DMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 721 ~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
.. .. .. ..+.... ...+.+++..|++.+|++||++.||++
T Consensus 244 -----~~-------~~-~~------~~~~~~~---~~~~~~li~~~l~~~p~~Rps~~e~l~ 283 (312)
T 2iwi_A 244 -----EI-------LE-AE------LHFPAHV---SPDCCALIRRCLAPKPSSRPSLEEILL 283 (312)
T ss_dssp -----HH-------HH-TC------CCCCTTS---CHHHHHHHHHHTCSSTTTSCCHHHHHH
T ss_pred -----HH-------hh-hc------cCCcccC---CHHHHHHHHHHccCChhhCcCHHHHhc
Confidence 00 00 00 0111111 123455667999999999999999986
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.12 E-value=1.3e-12 Score=144.21 Aligned_cols=41 Identities=29% Similarity=0.292 Sum_probs=20.9
Q ss_pred CCCCCcCEEeeecCcCccc----CCcccCCCCCCcEEECcCCCCc
Q 038019 278 GELQMLQILDLSFNNLTGQ----IPATLFNIDSLEYLFLGNNSLS 318 (866)
Q Consensus 278 ~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~L~~N~l~ 318 (866)
...++|+.|+|++|.|++. +...+..+++|++|+|++|.++
T Consensus 208 ~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 208 DRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp GGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred hcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence 3344555555555555432 2233334456666666666665
|
| >1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=1.7e-11 Score=131.08 Aligned_cols=125 Identities=19% Similarity=0.254 Sum_probs=85.1
Q ss_pred CcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeee------cCCCCchhHHHHHHHHHHHHHhcCCCC
Q 038019 643 PNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAM------RGHLTEKADVFSFGVVALEIISGRASS 716 (866)
Q Consensus 643 ~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~------~~~~t~ksDVySfGvvLlEl~tg~~p~ 716 (866)
.|++...+...++.|||.+..+..+.. .....||..|+|||.+. ...++.++||||||++++||++|+.|+
T Consensus 153 ~Nil~~~~~~~kl~dfg~~~~~~~~~~---~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~~l~~l~~g~~p~ 229 (298)
T 1phk_A 153 ENILLDDDMNIKLTDFGFSCQLDPGEK---LREVCGTPSYLAPEIIECSMNDNHPGYGKEVDMWSTGVIMYTLLAGSPPF 229 (298)
T ss_dssp GGEEECTTCCEEECCCTTCEECCTTCC---BCCCCSCGGGCCHHHHHHHHCTTSCCBCTHHHHHHHHHHHHHHHHSSCSS
T ss_pred ceEEEcCCCcEEEecccchhhcCCCcc---cccccCCccccCHHHhccccccccccCCcccccHhHHHHHHHHHHCCCCC
Confidence 366666666778999999888765432 23456899999999875 457899999999999999999999998
Q ss_pred CCCchhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 717 DKSLDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 717 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
....... ... ....+.. ....+....++ ..+.++...|++.||++||++.|+++
T Consensus 230 ~~~~~~~---~~~----~~~~~~~-~~~~~~~~~~~----~~l~~li~~~l~~dp~~Rps~~~ll~ 283 (298)
T 1phk_A 230 WHRKQML---MLR----MIMSGNY-QFGSPEWDDYS----DTVKDLVSRFLVVQPQKRYTAEEALA 283 (298)
T ss_dssp CCSSHHH---HHH----HHHHTCC-CCCTTTGGGSC----HHHHHHHHHHCCSSGGGSCCHHHHTT
T ss_pred cCccHHH---HHH----HHhcCCc-ccCcccccccC----HHHHHHHHHHccCCcccCCCHHHHHh
Confidence 7543221 111 1111111 11111111222 23556667999999999999999874
|
| >3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=9e-12 Score=143.13 Aligned_cols=118 Identities=19% Similarity=0.231 Sum_probs=80.3
Q ss_pred HHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCCchhhhhcHH
Q 038019 649 AELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSLDMEKIYLL 728 (866)
Q Consensus 649 ~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~~~~~~l~ 728 (866)
.+...++.|||.+..+..+.. .....||++|+|||.+.+ .++.++||||+||+++||+||+.|+......+ +.
T Consensus 164 ~~~~~kl~Dfg~a~~~~~~~~---~~~~~gt~~y~aPE~~~~-~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~---~~ 236 (484)
T 3nyv_A 164 KDANIRIIDFGLSTHFEASKK---MKDKIGTAYYIAPEVLHG-TYDEKCDVWSTGVILYILLSGCPPFNGANEYD---IL 236 (484)
T ss_dssp TTCCEEECCTTHHHHBCCCCS---HHHHTTGGGTCCHHHHHT-CCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHH---HH
T ss_pred CCCcEEEEeeeeeEEcccccc---cccCCCCccccCceeecC-CCCCcceeHHHHHHHHHHHHCCCCCCCCCHHH---HH
Confidence 344567899999987765432 233469999999998754 79999999999999999999999997644322 22
Q ss_pred HHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 729 EWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 729 ~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
..+ ..+... .-.|.....+ + .+.++...|++.+|++|||+.|+++
T Consensus 237 ~~i----~~~~~~-~~~~~~~~~s-~---~~~~li~~~L~~dp~~R~s~~e~l~ 281 (484)
T 3nyv_A 237 KKV----EKGKYT-FELPQWKKVS-E---SAKDLIRKMLTYVPSMRISARDALD 281 (484)
T ss_dssp HHH----HHCCCC-CCSGGGGGSC-H---HHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred HHH----HcCCCC-CCCcccccCC-H---HHHHHHHHHCCCChhHCcCHHHHhh
Confidence 222 112110 0011111122 2 3445666999999999999999975
|
| >3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei} | Back alignment and structure |
|---|
Probab=99.10 E-value=1.9e-11 Score=141.07 Aligned_cols=114 Identities=18% Similarity=0.183 Sum_probs=78.9
Q ss_pred HHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCCchhhhhcHHHHH
Q 038019 652 RSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSLDMEKIYLLEWA 731 (866)
Q Consensus 652 ~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~~~~~~l~~~~ 731 (866)
..++.|||.+..+..+. ......||+.|+|||.+. +.++.++||||+||+++||++|+.|+......+ +...+
T Consensus 187 ~~kl~Dfg~a~~~~~~~---~~~~~~gt~~y~aPE~~~-~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~---~~~~i 259 (504)
T 3q5i_A 187 NIKIVDFGLSSFFSKDY---KLRDRLGTAYYIAPEVLK-KKYNEKCDVWSCGVIMYILLCGYPPFGGQNDQD---IIKKV 259 (504)
T ss_dssp SEEECCCTTCEECCTTS---CBCCCCSCTTTCCHHHHT-TCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHH---HHHHH
T ss_pred cEEEEECCCCEEcCCCC---ccccccCCcCCCCHHHhc-cCCCchHHHHHHHHHHHHHHhCCCCCCCCCHHH---HHHHH
Confidence 45789999998876543 233457999999999876 679999999999999999999999998644322 22111
Q ss_pred HHHhhcCCcccccCCcc-cccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 732 WNLHENNQSFGLVDPTL-TEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 732 ~~~~~~~~~~~~~d~~l-~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
..+... .+... ...+ ..+.++...|++.||.+|||+.|+++
T Consensus 260 ----~~~~~~--~~~~~~~~~s----~~~~~li~~~L~~dp~~R~t~~e~l~ 301 (504)
T 3q5i_A 260 ----EKGKYY--FDFNDWKNIS----DEAKELIKLMLTYDYNKRCTAEEALN 301 (504)
T ss_dssp ----HHCCCC--CCHHHHTTSC----HHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred ----HcCCCC--CCccccCCCC----HHHHHHHHHHcCCChhHCCCHHHHhc
Confidence 112110 00000 1111 23455666999999999999999975
|
| >1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A | Back alignment and structure |
|---|
Probab=99.07 E-value=3.5e-11 Score=128.68 Aligned_cols=126 Identities=21% Similarity=0.263 Sum_probs=75.8
Q ss_pred CcccCHHHHHHHhcCCccccccCCCC------------ceeEEEeecCCCCccCceeeec-CCCCchhHHHHHHHHHHHH
Q 038019 643 PNIFGYAELRSATKDFNRSNKLGEGG------------YGPVYKVTANSYGYLAPEYAMR-GHLTEKADVFSFGVVALEI 709 (866)
Q Consensus 643 ~~~~~~~~~~~~~~dF~~~~~lg~g~------------~g~vy~~~~gt~gY~aPE~~~~-~~~t~ksDVySfGvvLlEl 709 (866)
.|++...+...++.|||.+..+.... .........||..|+|||.+.. +.++.++|||||||+++||
T Consensus 145 ~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l 224 (303)
T 1zy4_A 145 MNIFIDESRNVKIGDFGLAKNVHRSLDILKLDSQNLPGSSDNLTSAIGTAMYVATEVLDGTGHYNEKIDMYSLGIIFFEM 224 (303)
T ss_dssp GGEEECTTSCEEECCCCCCSCTTC-------------------------CTTSCHHHHTSCSCCCTHHHHHHHHHHHHHH
T ss_pred HhEEEcCCCCEEEeeCcchhhcccccchhccccccccccccccccCCCcccccCcccccCCCCCcchhhHHHHHHHHHHH
Confidence 46666666677899999998775431 1122334578999999999875 4799999999999999999
Q ss_pred HhcCCCCCCCchhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 710 ISGRASSDKSLDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 710 ~tg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
++ |+... .+....... ..... ..+.+.. .......+.++...|++.||++|||+.|+++
T Consensus 225 ~~---p~~~~--~~~~~~~~~----~~~~~--~~~~~~~---~~~~~~~~~~li~~~l~~dp~~Rps~~~ll~ 283 (303)
T 1zy4_A 225 IY---PFSTG--MERVNILKK----LRSVS--IEFPPDF---DDNKMKVEKKIIRLLIDHDPNKRPGARTLLN 283 (303)
T ss_dssp HS---CCSSH--HHHHHHHHH----HHSTT--CCCCTTC---CTTTSHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred Hh---ccCCc--hhHHHHHHh----ccccc--cccCccc---cccchHHHHHHHHHHHhcCcccCcCHHHHhC
Confidence 98 44321 111111111 11110 0111112 2222234556677999999999999999986
|
| >3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=5.2e-11 Score=139.26 Aligned_cols=129 Identities=19% Similarity=0.214 Sum_probs=81.4
Q ss_pred CcccCHHH---HHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCC
Q 038019 643 PNIFGYAE---LRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKS 719 (866)
Q Consensus 643 ~~~~~~~~---~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~ 719 (866)
.|++...+ ...++.|||.+..++.+.. .....||.+|+|||.+.++.++.++|||||||+++||+||+.|+...
T Consensus 150 ~NILl~~~g~~~~vKL~DFG~a~~~~~~~~---~~~~~gt~~Y~APE~l~~~~~s~ksDIwSLGviLyeLltG~~Pf~~~ 226 (676)
T 3qa8_A 150 ENIVLQPGPQRLIHKIIDLGYAKELDQGEL---CTEFVGTLQYLAPELLEQKKYTVTVDYWSFGTLAFECITGFRPFLPN 226 (676)
T ss_dssp TTEEEECCSSSCEEEECSCCCCCBTTSCCC---CCCCCSCCTTCSSCSSCCSCCSTTHHHHHHHHHHHHHHSSCSSCCSS
T ss_pred HHeEeecCCCceeEEEcccccccccccccc---cccccCCcccCChHHhccCCCCchhHHHHHHHHHHHHHHCCCCCCcc
Confidence 35554422 2356899999998876543 23457899999999999999999999999999999999999999753
Q ss_pred chhhhhcHHHHHHHHhhcCCc----ccccCC------cc---cccCHHHHHHHHHHHHHccCCCCCCCCCHHH
Q 038019 720 LDMEKIYLLEWAWNLHENNQS----FGLVDP------TL---TEFNDKEALRVIGVALLCTQTSPMMRPPMSR 779 (866)
Q Consensus 720 ~~~~~~~l~~~~~~~~~~~~~----~~~~d~------~l---~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~ 779 (866)
.. ...|.......... .+.... .+ ..........+.++...|++.||++|||+.|
T Consensus 227 ~~-----~~~~~~~i~~~~~~~~~~~~~l~g~~~~~~~lp~p~~l~~~ls~~L~dLI~~mL~~DP~kRPTa~e 294 (676)
T 3qa8_A 227 WQ-----PVQWHGKVREKSNEHIVVYDDLTGAVKFSSVLPTPNHLSGILAGKLERWLQCMLMWHQRQRGTDPQ 294 (676)
T ss_dssp CH-----HHHSSTTCC------CCSCCCCSSSCCCCSSSCCSCCCCGGGHHHHHHHHHHHSCSSCC---CCTT
T ss_pred cc-----hhhhhhhhhcccchhhhhhhhhccccccccccCCchhhchhhhHHHHHHHHHHccCCHhhCcCHHH
Confidence 22 12222111111100 011111 11 1122233445666777999999999999866
|
| >2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=4e-11 Score=127.52 Aligned_cols=115 Identities=20% Similarity=0.219 Sum_probs=77.7
Q ss_pred HHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCCchhhhhcHHHHH
Q 038019 652 RSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSLDMEKIYLLEWA 731 (866)
Q Consensus 652 ~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~~~~~~l~~~~ 731 (866)
..++.|||.+..+..... .....||..|+|||... +.++.++||||||++++||+||+.|+......+ +..
T Consensus 162 ~~kL~Dfg~~~~~~~~~~---~~~~~~~~~y~aPE~~~-~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~---~~~-- 232 (287)
T 2wei_A 162 DIKIIDFGLSTCFQQNTK---MKDRIGTAYYIAPEVLR-GTYDEKCDVWSAGVILYILLSGTPPFYGKNEYD---ILK-- 232 (287)
T ss_dssp CEEECSTTGGGTBCCCSS---CSCHHHHHTTCCHHHHT-TCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHH---HHH--
T ss_pred cEEEeccCcceeecCCCc---cccccCcccccChHHhc-CCCCCchhhHhHHHHHHHHHhCCCCCCCCCHHH---HHH--
Confidence 457899999887765432 22335789999999875 459999999999999999999999987543221 111
Q ss_pred HHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 732 WNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 732 ~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
....+... ...+.....+ ..+.++...|++.+|++||++.|+++
T Consensus 233 --~~~~~~~~-~~~~~~~~~~----~~~~~li~~~l~~dp~~Rps~~ell~ 276 (287)
T 2wei_A 233 --RVETGKYA-FDLPQWRTIS----DDAKDLIRKMLTFHPSLRITATQCLE 276 (287)
T ss_dssp --HHHHCCCC-CCSGGGTTSC----HHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred --HHHcCCCC-CCchhhhhcC----HHHHHHHHHHcccChhhCcCHHHHhc
Confidence 11122110 0001111122 23455667999999999999999986
|
| >3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A | Back alignment and structure |
|---|
Probab=98.96 E-value=3.5e-10 Score=120.15 Aligned_cols=92 Identities=9% Similarity=0.051 Sum_probs=58.9
Q ss_pred CCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCCchhhhhcHHHHHHHHhhcCCcccccCCcc---cccCHH
Q 038019 678 NSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSLDMEKIYLLEWAWNLHENNQSFGLVDPTL---TEFNDK 754 (866)
Q Consensus 678 gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l---~~~~~~ 754 (866)
++.+|++| ++.++|||||||++|||+||+.||......+.... ....+.... ......
T Consensus 171 ~~~~~~~~-------~~~~~Di~slG~il~elltg~~Pf~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~ 231 (286)
T 3uqc_A 171 AYPATMPD-------ANPQDDIRGIGASLYALLVNRWPLPEAGVRSGLAP------------AERDTAGQPIEPADIDRD 231 (286)
T ss_dssp CSCCCCTT-------CCHHHHHHHHHHHHHHHHHSEECSCCCSBCCCSEE------------CCBCTTSCBCCHHHHCTT
T ss_pred EeccccCC-------CCchhHHHHHHHHHHHHHHCCCCCCcCCcchhhHH------------HHHHhccCCCChhhcccC
Confidence 44556654 78999999999999999999999975433211000 000000000 011111
Q ss_pred HHHHHHHHHHHccCCCCCCCCCHHHHHHHHhcCcC
Q 038019 755 EALRVIGVALLCTQTSPMMRPPMSRVVAMLAGDIE 789 (866)
Q Consensus 755 ~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~~~~~ 789 (866)
....+.++..+|++.||++| |+.|++++|+....
T Consensus 232 ~~~~l~~li~~~l~~dP~~R-s~~el~~~L~~~~~ 265 (286)
T 3uqc_A 232 IPFQISAVAARSVQGDGGIR-SASTLLNLMQQATA 265 (286)
T ss_dssp SCHHHHHHHHHHHCTTSSCC-CHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHcccCCccC-CHHHHHHHHHHHhc
Confidence 12335567779999999999 99999999986443
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.91 E-value=3.6e-10 Score=135.34 Aligned_cols=114 Identities=18% Similarity=0.122 Sum_probs=78.9
Q ss_pred CcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCCchh
Q 038019 643 PNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSLDM 722 (866)
Q Consensus 643 ~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~~ 722 (866)
.|++...+ ..++.|||.++.++..+ ...||++|||||++.++ .+.++|||||||+++||++|..|+......
T Consensus 211 ~NIll~~~-~~kl~DFG~a~~~~~~~------~~~gt~~y~aPE~~~~~-~~~~sDi~slG~~l~~l~~g~~~~~~~~~~ 282 (681)
T 2pzi_A 211 ENIMLTEE-QLKLIDLGAVSRINSFG------YLYGTPGFQAPEIVRTG-PTVATDIYTVGRTLAALTLDLPTRNGRYVD 282 (681)
T ss_dssp GGEEECSS-CEEECCCTTCEETTCCS------CCCCCTTTSCTTHHHHC-SCHHHHHHHHHHHHHHHHSCCCEETTEECS
T ss_pred HHeEEeCC-cEEEEecccchhcccCC------ccCCCccccCHHHHcCC-CCCceehhhhHHHHHHHHhCCCCCcccccc
Confidence 36655544 56899999998876542 24689999999998765 499999999999999999998876531110
Q ss_pred hhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCC-HHHHHHHHhc
Q 038019 723 EKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPP-MSRVVAMLAG 786 (866)
Q Consensus 723 ~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPs-m~~V~~~L~~ 786 (866)
. +. ... ........+.++..+|++.||++||+ +.++...|.+
T Consensus 283 ~-------------------~~-~~~--~~~~~~~~l~~li~~~l~~dP~~R~~~~~~l~~~l~~ 325 (681)
T 2pzi_A 283 G-------------------LP-EDD--PVLKTYDSYGRLLRRAIDPDPRQRFTTAEEMSAQLTG 325 (681)
T ss_dssp S-------------------CC-TTC--HHHHHCHHHHHHHHHHTCSSGGGSCSSHHHHHHHHHH
T ss_pred c-------------------cc-ccc--cccccCHHHHHHHhhhccCChhhCCCHHHHHHHHHHH
Confidence 0 00 000 00111234566777999999999995 6666666654
|
| >4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.89 E-value=2e-08 Score=111.89 Aligned_cols=83 Identities=12% Similarity=-0.006 Sum_probs=42.4
Q ss_pred chhhcCCCCCCEEEccCccCCCCCchhhhcCCCCCceeccCcccccCCCcccCCCCCcCEEeeecCcCcccCCcccCCCC
Q 038019 226 PSSLSKLASLESLQMSDIYNVSSSLDFVMSLKNLTDLSLRNALITGTIPFGIGELQMLQILDLSFNNLTGQIPATLFNID 305 (866)
Q Consensus 226 p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~ 305 (866)
...|.++..|+.+.+..+.. ......+..+..|+.+.+..+.+. ...|..+.+|+.+.+..+ ++......|.++.
T Consensus 246 ~~~f~~~~~l~~~~~~~~~~-~i~~~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~ 320 (394)
T 4fs7_A 246 KSVFYGCTDLESISIQNNKL-RIGGSLFYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCT 320 (394)
T ss_dssp SSTTTTCSSCCEEEECCTTC-EECSCTTTTCTTCCEEEECSSEEC---TTTTTTCTTCCEEEECTT-CCEECTTTTTTCT
T ss_pred cccccccccceeEEcCCCcc-eeeccccccccccceeccCceeec---cccccccccccccccccc-cceechhhhcCCC
Confidence 34566777788777765422 222334445555555555443321 123445555555555433 3333344555555
Q ss_pred CCcEEECc
Q 038019 306 SLEYLFLG 313 (866)
Q Consensus 306 ~L~~L~L~ 313 (866)
+|+.++|.
T Consensus 321 ~L~~i~lp 328 (394)
T 4fs7_A 321 SLVSIDLP 328 (394)
T ss_dssp TCCEECCC
T ss_pred CCCEEEeC
Confidence 66665554
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.84 E-value=7.5e-10 Score=121.03 Aligned_cols=103 Identities=14% Similarity=0.121 Sum_probs=51.9
Q ss_pred eeeEEEEEEcccCcCC-C-------CCcccCCCCCCCEEEccCCCCC---------CCCCccccCCCCcCEEeccCCcCC
Q 038019 64 TCHITKLRVYGLNKKG-V-------IPEELVTLQYLTVLKIDQNFFT---------GPLPSFIGNLSRLMFLSFSHNDFS 126 (866)
Q Consensus 64 ~~~v~~L~l~~~~l~~-~-------~p~~l~~l~~L~~L~Ls~n~l~---------~~~p~~l~~l~~L~~L~Ls~N~l~ 126 (866)
.++|+.|.+..+...| . +..++..+++|+.|.|..+.+. +.+...+..+++|+.|+|++|.-.
T Consensus 106 ~~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l 185 (362)
T 2ra8_A 106 LPSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL 185 (362)
T ss_dssp GGGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC
T ss_pred chhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc
Confidence 3467777776555442 2 1233556778888888654321 123334455666666666655211
Q ss_pred CCCCccccCCCCCCEeeccCCCCCCCCchhhc--CCCCccEEEee
Q 038019 127 GPVPRELGNLKELTVLAFGTNNFSGALPPELG--NLAKLEQLYID 169 (866)
Q Consensus 127 ~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~--~l~~L~~L~L~ 169 (866)
.++. +. +++|++|+|..|.++......+. .+++|++|+|+
T Consensus 186 -~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~ 227 (362)
T 2ra8_A 186 -SIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLY 227 (362)
T ss_dssp -BCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEE
T ss_pred -eecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEe
Confidence 1222 22 45566666655554432222232 45555555553
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.81 E-value=1e-09 Score=119.96 Aligned_cols=63 Identities=21% Similarity=0.208 Sum_probs=31.7
Q ss_pred CCCcCEEeeecCcCcccCCccc---CCCCCCcEEECcCCCCccc----CCc--ccCCCCCEEEeeCCCCCCc
Q 038019 280 LQMLQILDLSFNNLTGQIPATL---FNIDSLEYLFLGNNSLSGT----LPD--QKSENLQKIDLSHNHLSGT 342 (866)
Q Consensus 280 l~~L~~L~Ls~N~l~~~~p~~l---~~l~~L~~L~L~~N~l~g~----~p~--~~~~~L~~L~Ls~N~l~g~ 342 (866)
+++|+.|+|.+|.+.+..+..+ ..+++|++|+|+.|.+++. ++. ...++|+.|+|++|.++..
T Consensus 251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~ 322 (362)
T 2ra8_A 251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDE 322 (362)
T ss_dssp CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHH
T ss_pred CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHH
Confidence 4556666666555543222222 1345666666666666532 111 1235566666666665543
|
| >4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} | Back alignment and structure |
|---|
Probab=98.79 E-value=5.2e-08 Score=108.42 Aligned_cols=262 Identities=12% Similarity=0.112 Sum_probs=155.9
Q ss_pred EEEEEEcccCcCCCCCcccCCCCCCCEEEccCCC---CCCCCCccccCCCCcCEEeccCCcCCCCCCccccCCCCCCEee
Q 038019 67 ITKLRVYGLNKKGVIPEELVTLQYLTVLKIDQNF---FTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKELTVLA 143 (866)
Q Consensus 67 v~~L~l~~~~l~~~~p~~l~~l~~L~~L~Ls~n~---l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 143 (866)
++++.+.. +++..-..+|.++++|+.+.+..|. ++.+-..+|.++.+|+.+.+..+ ++.....+|.++.+|+.+.
T Consensus 66 L~sI~iP~-svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i~ 143 (394)
T 4gt6_A 66 LTSVQIPD-TVTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTVT 143 (394)
T ss_dssp CCEEEECT-TCCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEEE
T ss_pred CEEEEECC-CeeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhccccccc
Confidence 55666643 3444445667788888888887653 55444566777777777776654 4434455677777777777
Q ss_pred ccCCCCCCCCchhhcCCCCccEEEeecCCCCCCChhhhhcCcCCCEEEecCCCCCCCCcccccCCCCCCeEEccCC----
Q 038019 144 FGTNNFSGALPPELGNLAKLEQLYIDSCGAGGEIPSTFAKLRNMQTLWASDNPFTGKIPDFIGNWTKLKSLRFQGN---- 219 (866)
Q Consensus 144 Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N---- 219 (866)
+..+ +.......|..+.+|+.+.+..+ ++..-...|.. .+|+.+.+..+-.. .-...|.++.+|.......+
T Consensus 144 lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~~~~-i~~~af~~c~~l~~~~~~~~~~~~ 219 (394)
T 4gt6_A 144 IPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAKVTR-IGTNAFSECFALSTITSDSESYPA 219 (394)
T ss_dssp CCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTTCCE-ECTTTTTTCTTCCEEEECCSSSCB
T ss_pred ccce-eeeecccceecccccccccccce-eeEeccccccc-cceeEEEECCcccc-cccchhhhccccceeccccccccc
Confidence 7543 33344456667777777777543 33333333432 45666655443211 22223333334433322211
Q ss_pred --------------------------------CCCCCCchhhcCCCCCCEEEccCccCCCCCchhhhcCCCCCceeccCc
Q 038019 220 --------------------------------SFQGPIPSSLSKLASLESLQMSDIYNVSSSLDFVMSLKNLTDLSLRNA 267 (866)
Q Consensus 220 --------------------------------~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n 267 (866)
.+...-...|.++..|+.+.+.++. .......|.+++.|+.+.+..
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~v~~i~~~aF~~c~~L~~i~lp~~~-~~I~~~aF~~c~~L~~i~l~~- 297 (394)
T 4gt6_A 220 IDNVLYEKSANGDYALIRYPSQREDPAFKIPNGVARIETHAFDSCAYLASVKMPDSV-VSIGTGAFMNCPALQDIEFSS- 297 (394)
T ss_dssp SSSCEEEECTTSCEEEEECCTTCCCSEEECCTTEEEECTTTTTTCSSCCEEECCTTC-CEECTTTTTTCTTCCEEECCT-
T ss_pred ccceeecccccccccccccccccccceEEcCCcceEcccceeeecccccEEeccccc-ceecCcccccccccccccCCC-
Confidence 1111223467788888888886532 234445677788888888863
Q ss_pred ccccCCCcccCCCCCcCEEeeecCcCcccCCcccCCCCCCcEEECcCCCCcccCCcc---cCCCCCEEEeeCCCC
Q 038019 268 LITGTIPFGIGELQMLQILDLSFNNLTGQIPATLFNIDSLEYLFLGNNSLSGTLPDQ---KSENLQKIDLSHNHL 339 (866)
Q Consensus 268 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~~p~~---~~~~L~~L~Ls~N~l 339 (866)
.++......|..+.+|+.++|..+ ++......|.++.+|+.+.|..+ ++ .+... .+.+|+.+++.+|..
T Consensus 298 ~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~-~I~~~aF~~C~~L~~i~~~~~~~ 369 (394)
T 4gt6_A 298 RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VT-KIPESAFSNCTALNNIEYSGSRS 369 (394)
T ss_dssp TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CC-BCCGGGGTTCTTCCEEEESSCHH
T ss_pred cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cC-EEhHhHhhCCCCCCEEEECCcee
Confidence 344444557888888888888754 55555677888888888888654 44 23332 246788888887643
|
| >4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.71 E-value=1.5e-07 Score=104.67 Aligned_cols=220 Identities=14% Similarity=0.083 Sum_probs=118.6
Q ss_pred CccccCCCCcCEEeccCCcCCCCCCccccCCCCCCEeeccCCCCCCCCchhhcCCCCccEEEeecCCCCCCChhhhhcCc
Q 038019 106 PSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKELTVLAFGTNNFSGALPPELGNLAKLEQLYIDSCGAGGEIPSTFAKLR 185 (866)
Q Consensus 106 p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~ 185 (866)
...|.++++|+.+.|..+- .......|.++.+|+.+++..| ++......|.++..|+.+.+..+... +.+.+....
T Consensus 155 ~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~--i~~~~~~~~ 230 (394)
T 4fs7_A 155 DEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY--LGDFALSKT 230 (394)
T ss_dssp TTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE--ECTTTTTTC
T ss_pred hhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceE--eehhhcccC
Confidence 3456666777777766443 2234455666677777766554 33344455666666666665543321 122233345
Q ss_pred CCCEEEecCCCCCCCCcccccCCCCCCeEEccCCCCCCCCchhhcCCCCCCEEEccCccCCCCCchhhhcCCCCCceecc
Q 038019 186 NMQTLWASDNPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLESLQMSDIYNVSSSLDFVMSLKNLTDLSLR 265 (866)
Q Consensus 186 ~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~ 265 (866)
+|+.+.+..+ ++..-...+.++.+|+.+.+..+... .....|..+..|+.+.+....+ ....+..+.+|+.+.+.
T Consensus 231 ~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i---~~~~F~~~~~L~~i~l~ 305 (394)
T 4fs7_A 231 GVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIV---PEKTFYGCSSLTEVKLL 305 (394)
T ss_dssp CCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEE---CTTTTTTCTTCCEEEEC
T ss_pred CCceEEECCC-ceecccccccccccceeEEcCCCcce-eeccccccccccceeccCceee---ccccccccccccccccc
Confidence 6666666433 22223344556666666666655332 3345566666666665544321 22345556666666665
Q ss_pred CcccccCCCcccCCCCCcCEEeeecCcCcccCCcccCCCCCCcEEECcCCCCcccCCc--ccCCCCCEEEeeCC
Q 038019 266 NALITGTIPFGIGELQMLQILDLSFNNLTGQIPATLFNIDSLEYLFLGNNSLSGTLPD--QKSENLQKIDLSHN 337 (866)
Q Consensus 266 ~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~~p~--~~~~~L~~L~Ls~N 337 (866)
.+ ++..-...|..+.+|+.++|..+ ++.....+|.++.+|+.++|..| ++..-.. ..+.+|+.+++..+
T Consensus 306 ~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 306 DS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp TT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred cc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence 44 33333445666777777777543 55444566677777777777655 4321111 12356777776543
|
| >3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A* | Back alignment and structure |
|---|
Probab=98.66 E-value=1.1e-08 Score=109.12 Aligned_cols=103 Identities=14% Similarity=0.157 Sum_probs=62.4
Q ss_pred cccCHH---HHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCCc
Q 038019 644 NIFGYA---ELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSL 720 (866)
Q Consensus 644 ~~~~~~---~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~ 720 (866)
|++... +...++.|||.+..+. ...++.++|||||||+++||+||+.|+....
T Consensus 147 Nil~~~~~~~~~~kl~Dfg~a~~~~------------------------~~~~~~~~DiwslG~il~el~tg~~pf~~~~ 202 (299)
T 3m2w_A 147 NLLYTSKRPNAILKLTDFGFAKETT------------------------GEKYDKSCDMWSLGVIMYILLCGYPPFYSNH 202 (299)
T ss_dssp GEEESSSSTTCCEEECCCTTCEECT------------------------TCGGGGHHHHHHHHHHHHHHHHSSCSCCC--
T ss_pred HEEEecCCCCCcEEEeccccccccc------------------------cccCCchhhHHHHHHHHHHHHHCCCCCCCCc
Confidence 555443 3456677887765443 2457889999999999999999999986532
Q ss_pred hhhhhcHHHHHHHHhhcCCcccccCCcccccCH----HHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 721 DMEKIYLLEWAWNLHENNQSFGLVDPTLTEFND----KEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 721 ~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~----~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
.... .......+..... ..+. .....+.++...|++.||++||++.||++
T Consensus 203 ~~~~-----------~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~li~~~l~~dP~~Rps~~e~l~ 256 (299)
T 3m2w_A 203 GLAI-----------SPGMKTRIRMGQY-EFPNPEWSEVSEEVKMLIRNLLKTEPTQRMTITEFMN 256 (299)
T ss_dssp ----------------CCSCCSSCTTCC-SSCHHHHTTSCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred chhh-----------hHHHHHHHhhccc-cCCchhcccCCHHHHHHHHHHcccChhhCCCHHHHhc
Confidence 2110 0000001111110 1111 11234556777999999999999999986
|
| >4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} | Back alignment and structure |
|---|
Probab=98.59 E-value=3.9e-07 Score=101.32 Aligned_cols=264 Identities=9% Similarity=0.081 Sum_probs=170.5
Q ss_pred eEEEEEEcccC---cCCCCCcccCCCCCCCEEEccCCCCCCCCCccccCCCCcCEEeccCCcCCCCCCccccCCCCCCEe
Q 038019 66 HITKLRVYGLN---KKGVIPEELVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKELTVL 142 (866)
Q Consensus 66 ~v~~L~l~~~~---l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 142 (866)
+++++.+..+. ++..-...|.++..|+.+.+..+ ++.+....|.++.+|+.+.|..+ +.......|..+.+|+.+
T Consensus 88 ~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i 165 (394)
T 4gt6_A 88 SLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTVTIPEG-VTSVADGMFSYCYSLHTV 165 (394)
T ss_dssp TCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEE
T ss_pred cCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhcccccccccce-eeeecccceecccccccc
Confidence 57888887653 44444567888888988887654 44455667888899999998754 343555678888888888
Q ss_pred eccCCCCCCCCchhhcCCCCccEEEeecCCCCCCChhhhhcCcCCCEEEecCCCC-------------------------
Q 038019 143 AFGTNNFSGALPPELGNLAKLEQLYIDSCGAGGEIPSTFAKLRNMQTLWASDNPF------------------------- 197 (866)
Q Consensus 143 ~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l------------------------- 197 (866)
.+..+ ++..-...|. ..+|+.+.+..+ +.......|..+.+|.......+..
T Consensus 166 ~~~~~-~~~I~~~aF~-~~~l~~i~ip~~-~~~i~~~af~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (394)
T 4gt6_A 166 TLPDS-VTAIEERAFT-GTALTQIHIPAK-VTRIGTNAFSECFALSTITSDSESYPAIDNVLYEKSANGDYALIRYPSQR 242 (394)
T ss_dssp ECCTT-CCEECTTTTT-TCCCSEEEECTT-CCEECTTTTTTCTTCCEEEECCSSSCBSSSCEEEECTTSCEEEEECCTTC
T ss_pred cccce-eeEecccccc-ccceeEEEECCc-ccccccchhhhccccceecccccccccccceeeccccccccccccccccc
Confidence 88654 3333334443 356777777543 2333344555555555554332211
Q ss_pred -----------CCCCcccccCCCCCCeEEccCCCCCCCCchhhcCCCCCCEEEccCccCCCCCchhhhcCCCCCceeccC
Q 038019 198 -----------TGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLESLQMSDIYNVSSSLDFVMSLKNLTDLSLRN 266 (866)
Q Consensus 198 -----------~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~ 266 (866)
+..-...|.++.+|+.+.+..+... .-...|.++.+|+.+.+.. .+.......|.++.+|+.+.|..
T Consensus 243 ~~~~~~ip~~v~~i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~ 320 (394)
T 4gt6_A 243 EDPAFKIPNGVARIETHAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPE 320 (394)
T ss_dssp CCSEEECCTTEEEECTTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCT
T ss_pred ccceEEcCCcceEcccceeeecccccEEecccccce-ecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCC
Confidence 1111235677888999998765443 4557788999999999863 34455566788999999999976
Q ss_pred cccccCCCcccCCCCCcCEEeeecCcCcccCCcccCCCCCCcEEECcCCCCcccCCcccCCCCCEEEeeCCCC
Q 038019 267 ALITGTIPFGIGELQMLQILDLSFNNLTGQIPATLFNIDSLEYLFLGNNSLSGTLPDQKSENLQKIDLSHNHL 339 (866)
Q Consensus 267 n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~~p~~~~~~L~~L~Ls~N~l 339 (866)
+ ++..-...|..+.+|+.+.|..+ ++..-...|.++.+|+.+++.+|..... .......|+.+.+..|.+
T Consensus 321 ~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~~-~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 321 G-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQWN-AISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp T-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHHH-TCBCCCCC----------
T ss_pred c-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeehh-hhhccCCCCEEEeCCCCE
Confidence 5 55445567899999999999755 6656667899999999999988764321 112336788888776654
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=98.40 E-value=4.1e-08 Score=96.74 Aligned_cols=117 Identities=16% Similarity=0.100 Sum_probs=63.8
Q ss_pred CCcccCCCCCCCEEEccCC-CCCCC----CCccccCCCCcCEEeccCCcCCCC----CCccccCCCCCCEeeccCCCCCC
Q 038019 81 IPEELVTLQYLTVLKIDQN-FFTGP----LPSFIGNLSRLMFLSFSHNDFSGP----VPRELGNLKELTVLAFGTNNFSG 151 (866)
Q Consensus 81 ~p~~l~~l~~L~~L~Ls~n-~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~ 151 (866)
+...+...+.|++|+|++| .+... +...+...++|++|+|++|.|... +...+...++|++|+|++|.++.
T Consensus 28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~ 107 (185)
T 1io0_A 28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISG 107 (185)
T ss_dssp HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCH
T ss_pred HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCH
Confidence 3445666777888888887 77532 334455667777777777777532 22334445666666666666653
Q ss_pred C----CchhhcCCCCccEEEe--ecCCCCCC----ChhhhhcCcCCCEEEecCCCC
Q 038019 152 A----LPPELGNLAKLEQLYI--DSCGAGGE----IPSTFAKLRNMQTLWASDNPF 197 (866)
Q Consensus 152 ~----~p~~l~~l~~L~~L~L--~~n~l~~~----~p~~~~~l~~L~~L~L~~N~l 197 (866)
. +...+...++|++|+| ++|.++.. +...+...++|++|+|++|.+
T Consensus 108 ~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 108 SGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred HHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 2 2333444455555555 44555432 122233334444444444443
|
| >4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum} | Back alignment and structure |
|---|
Probab=98.35 E-value=6.2e-06 Score=90.98 Aligned_cols=259 Identities=11% Similarity=0.043 Sum_probs=158.5
Q ss_pred eEEEEEEcccCcCCCCCcccCCCCCCCEEEccCCCCCCCCCccccCCCCcCEEeccCCcCCCCCCccccCCCCCCEeecc
Q 038019 66 HITKLRVYGLNKKGVIPEELVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKELTVLAFG 145 (866)
Q Consensus 66 ~v~~L~l~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls 145 (866)
+++++.+.. +++..-..+|.++.+|+.++|..+ ++.+...+|.++ +|+.+.+..+ ++.+-..+|... +|+.+.+.
T Consensus 47 ~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~~-~L~~i~lp 121 (379)
T 4h09_A 47 RISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQGT-DLDDFEFP 121 (379)
T ss_dssp GCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTTC-CCSEEECC
T ss_pred CCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceeccC-CcccccCC
Confidence 456666642 344444567888888888888654 555555667776 5777776543 443334455543 67777776
Q ss_pred CCCCCCCCchhhcCCCCccEEEeecCCCCCCChhhhhcCcCCCEEEecCCCC----------------------------
Q 038019 146 TNNFSGALPPELGNLAKLEQLYIDSCGAGGEIPSTFAKLRNMQTLWASDNPF---------------------------- 197 (866)
Q Consensus 146 ~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l---------------------------- 197 (866)
.+- +......|.+. +|+.+.+.. .++......|..+.+|+.+.+..+..
T Consensus 122 ~~~-~~i~~~~F~~~-~l~~~~~~~-~v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (379)
T 4h09_A 122 GAT-TEIGNYIFYNS-SVKRIVIPK-SVTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTGTE 198 (379)
T ss_dssp TTC-CEECTTTTTTC-CCCEEEECT-TCCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCCSE
T ss_pred Ccc-ccccccccccc-eeeeeeccc-eeeccccchhcccccccccccccccceeecccceecccccceeccccccccccc
Confidence 442 21222233332 344444432 23333333444455555444432211
Q ss_pred -------CCCCcccccCCCCCCeEEccCCCCCCCCchhhcCCCCCCEEEccCccCCCCCchhhhcCCCCCceeccCcccc
Q 038019 198 -------TGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLESLQMSDIYNVSSSLDFVMSLKNLTDLSLRNALIT 270 (866)
Q Consensus 198 -------~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~ 270 (866)
.......+....+|+.+.+..+ +.......|.++..|+.+.+..+ +.......+.++.+|+.+.+..+ +.
T Consensus 199 ~~~~~~~~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~ 275 (379)
T 4h09_A 199 FTIPSTVKTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VK 275 (379)
T ss_dssp EECCTTCCEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CS
T ss_pred cccccceeEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ce
Confidence 1112334556677888888655 34345567888999999998764 44455567888889999988654 44
Q ss_pred cCCCcccCCCCCcCEEeeecCcCcccCCcccCCCCCCcEEECcCCCCcccCCcc---cCCCCCEEEeeCC
Q 038019 271 GTIPFGIGELQMLQILDLSFNNLTGQIPATLFNIDSLEYLFLGNNSLSGTLPDQ---KSENLQKIDLSHN 337 (866)
Q Consensus 271 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~~p~~---~~~~L~~L~Ls~N 337 (866)
......|..+.+|+.+.+.++.++......|.++.+|+.+.|..+ ++ .+... .+.+|+.+.+..+
T Consensus 276 ~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 276 TVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LK-TIQVYAFKNCKALSTISYPKS 343 (379)
T ss_dssp EECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CC-EECTTTTTTCTTCCCCCCCTT
T ss_pred eccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-cc-EEHHHHhhCCCCCCEEEECCc
Confidence 344457888999999999998888777788999999999999754 44 22222 2356777766543
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=98.32 E-value=8.3e-08 Score=94.49 Aligned_cols=116 Identities=12% Similarity=0.119 Sum_probs=63.8
Q ss_pred CccccCCCCcCEEeccCC-cCCC----CCCccccCCCCCCEeeccCCCCCCC----CchhhcCCCCccEEEeecCCCCCC
Q 038019 106 PSFIGNLSRLMFLSFSHN-DFSG----PVPRELGNLKELTVLAFGTNNFSGA----LPPELGNLAKLEQLYIDSCGAGGE 176 (866)
Q Consensus 106 p~~l~~l~~L~~L~Ls~N-~l~~----~~p~~l~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~ 176 (866)
...+...++|++|+|++| .|.. .+...+...++|++|+|++|.+... +...+...++|++|+|++|.++..
T Consensus 29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~ 108 (185)
T 1io0_A 29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGS 108 (185)
T ss_dssp HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH
T ss_pred HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHH
Confidence 344566778888888887 7753 2334455667777777777777542 223344445666666666666543
Q ss_pred ----ChhhhhcCcCCCEEEe--cCCCCCCC----CcccccCCCCCCeEEccCCCC
Q 038019 177 ----IPSTFAKLRNMQTLWA--SDNPFTGK----IPDFIGNWTKLKSLRFQGNSF 221 (866)
Q Consensus 177 ----~p~~~~~l~~L~~L~L--~~N~l~~~----~p~~l~~l~~L~~L~L~~N~l 221 (866)
+...+...++|++|+| ++|.++.. +.+.+...++|++|+|++|.+
T Consensus 109 g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 109 GILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred HHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 2334444455555555 55555432 122233334455555555444
|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
Probab=98.28 E-value=7.8e-08 Score=99.65 Aligned_cols=77 Identities=21% Similarity=0.250 Sum_probs=35.3
Q ss_pred CCccEEEeecCCCCC--CChhhhhcCcCCCEEEecCCCCCCCCcccccCCC--CCCeEEccCCCCCCCCc-------hhh
Q 038019 161 AKLEQLYIDSCGAGG--EIPSTFAKLRNMQTLWASDNPFTGKIPDFIGNWT--KLKSLRFQGNSFQGPIP-------SSL 229 (866)
Q Consensus 161 ~~L~~L~L~~n~l~~--~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~--~L~~L~L~~N~l~~~~p-------~~~ 229 (866)
++|+.|+|++|++++ .+|..+..+++|+.|+|++|+|++. ..+..+. +|++|+|++|.+.+.+| ..+
T Consensus 170 ~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il 247 (267)
T 3rw6_A 170 PELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIR 247 (267)
T ss_dssp TTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHH
T ss_pred CCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHHHH
Confidence 334444444444433 2233444455555555555555432 1222222 55556666665554333 234
Q ss_pred cCCCCCCEEE
Q 038019 230 SKLASLESLQ 239 (866)
Q Consensus 230 ~~l~~L~~L~ 239 (866)
..+++|+.|+
T Consensus 248 ~~~P~L~~LD 257 (267)
T 3rw6_A 248 ERFPKLLRLD 257 (267)
T ss_dssp HHCTTCCEES
T ss_pred HHCcccCeEC
Confidence 5566666664
|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
Probab=98.18 E-value=7.8e-07 Score=92.11 Aligned_cols=104 Identities=18% Similarity=0.253 Sum_probs=77.6
Q ss_pred cCCCCCCCE--EEccCCCCCCCCCc----cccCCCCcCEEeccCCcCCC--CCCccccCCCCCCEeeccCCCCCCCCchh
Q 038019 85 LVTLQYLTV--LKIDQNFFTGPLPS----FIGNLSRLMFLSFSHNDFSG--PVPRELGNLKELTVLAFGTNNFSGALPPE 156 (866)
Q Consensus 85 l~~l~~L~~--L~Ls~n~l~~~~p~----~l~~l~~L~~L~Ls~N~l~~--~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~ 156 (866)
|...+.|+. ++++.|... .++. ...++++|+.|+|++|+|++ .+|..+..+++|++|+|++|++++. ..
T Consensus 137 l~~dp~L~~~~l~l~~N~~~-~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~ 213 (267)
T 3rw6_A 137 LRSDPDLVAQNIDVVLNRRS-CMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RE 213 (267)
T ss_dssp GGGCHHHHHTTCCCCTTSHH-HHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GG
T ss_pred cCCCcchhhcCccccCCHHH-HHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hh
Confidence 444455555 677777433 2222 22568899999999999997 4567778899999999999999865 34
Q ss_pred hcCCC--CccEEEeecCCCCCCCh-------hhhhcCcCCCEEE
Q 038019 157 LGNLA--KLEQLYIDSCGAGGEIP-------STFAKLRNMQTLW 191 (866)
Q Consensus 157 l~~l~--~L~~L~L~~n~l~~~~p-------~~~~~l~~L~~L~ 191 (866)
+..+. +|++|+|++|.+.+.+| ..+..+++|+.||
T Consensus 214 l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 214 LDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp GGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred hhhcccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence 44444 99999999999987665 3477899999885
|
| >2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A | Back alignment and structure |
|---|
Probab=98.16 E-value=5.7e-07 Score=97.54 Aligned_cols=58 Identities=7% Similarity=-0.007 Sum_probs=47.7
Q ss_pred HHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHH-HHHHHhcCCCCC
Q 038019 652 RSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVV-ALEIISGRASSD 717 (866)
Q Consensus 652 ~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvv-LlEl~tg~~p~~ 717 (866)
..++.|||.++.+..+ ...||..|||||.+.+.. +.++||||++++ ..++++|..|+.
T Consensus 220 ~vkL~DFG~a~~~~~~-------~~~gt~~y~aPE~~~g~~-~~~~Diwsl~~~~~~~~~~g~~p~~ 278 (336)
T 2vuw_A 220 QVSIIDYTLSRLERDG-------IVVFCDVSMDEDLFTGDG-DYQFDIYRLMKKENNNRWGEYHPYS 278 (336)
T ss_dssp EEEECCCTTCBEEETT-------EEECCCCTTCSGGGCCCS-SHHHHHHHHHHHHHTTCTTSCCTHH
T ss_pred eEEEeeccccEecCCC-------cEEEeecccChhhhcCCC-ccceehhhhhCCCCcccccccCCCc
Confidence 6789999999988754 236999999999987555 999999998777 677888988863
|
| >4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum} | Back alignment and structure |
|---|
Probab=98.07 E-value=5.5e-05 Score=83.29 Aligned_cols=239 Identities=12% Similarity=0.012 Sum_probs=152.4
Q ss_pred eEEEEEEcccCcCCCCCcccCCCCCCCEEEccCCCCCCCCCccccCCCCcCEEeccCCcCCCCCCccccCCCCCCEeecc
Q 038019 66 HITKLRVYGLNKKGVIPEELVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKELTVLAFG 145 (866)
Q Consensus 66 ~v~~L~l~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls 145 (866)
+++++.+.. +++..-..+|.++ .|+.+.+..+ ++.+....|... +|+.+.|..+- +......|.+. +|+.+.+.
T Consensus 70 ~L~~I~lp~-~v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~~-~L~~i~lp~~~-~~i~~~~F~~~-~l~~~~~~ 143 (379)
T 4h09_A 70 NMTKVTVAS-TVTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQGT-DLDDFEFPGAT-TEIGNYIFYNS-SVKRIVIP 143 (379)
T ss_dssp TCCEEEECT-TCCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTTC-CCSEEECCTTC-CEECTTTTTTC-CCCEEEEC
T ss_pred CCCEEEeCC-cceEechhhhcCC-CCceEECCce-eeEeccceeccC-CcccccCCCcc-ccccccccccc-eeeeeecc
Confidence 577888854 3554445667666 5777766543 443334445543 67887776542 21222333332 34444332
Q ss_pred CCCCCCCCchhhcCCCCccEEEeecC-----------------------------------CCCCCChhhhhcCcCCCEE
Q 038019 146 TNNFSGALPPELGNLAKLEQLYIDSC-----------------------------------GAGGEIPSTFAKLRNMQTL 190 (866)
Q Consensus 146 ~N~l~~~~p~~l~~l~~L~~L~L~~n-----------------------------------~l~~~~p~~~~~l~~L~~L 190 (866)
.+ ++......+..+.+|+.+.+..+ .........+..+.+|+.+
T Consensus 144 ~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~~~~l~~i 222 (379)
T 4h09_A 144 KS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTGTEFTIPSTVKTVTAYGFSYGKNLKKI 222 (379)
T ss_dssp TT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCCSEEECCTTCCEECTTTTTTCSSCSEE
T ss_pred ce-eeccccchhcccccccccccccccceeecccceecccccceeccccccccccccccccceeEEeeccccccccccee
Confidence 22 22222333444444444333221 1122234456677889999
Q ss_pred EecCCCCCCCCcccccCCCCCCeEEccCCCCCCCCchhhcCCCCCCEEEccCccCCCCCchhhhcCCCCCceeccCcccc
Q 038019 191 WASDNPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLESLQMSDIYNVSSSLDFVMSLKNLTDLSLRNALIT 270 (866)
Q Consensus 191 ~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~ 270 (866)
.+..+ +.......+.++.+|+.+.+..+ ++..-...|.++.+|+.+.+..+ +.......|.++.+|+.+.+.++.++
T Consensus 223 ~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~ 299 (379)
T 4h09_A 223 TITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIE 299 (379)
T ss_dssp ECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCC
T ss_pred eeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccc
Confidence 88655 44344567788899999999776 55455678889999999998653 44555567888999999999988887
Q ss_pred cCCCcccCCCCCcCEEeeecCcCcccCCcccCCCCCCcEEECcCC
Q 038019 271 GTIPFGIGELQMLQILDLSFNNLTGQIPATLFNIDSLEYLFLGNN 315 (866)
Q Consensus 271 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N 315 (866)
..-...|..+.+|+.+.|..+ ++..-..+|.++.+|+.+.+..+
T Consensus 300 ~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 300 TLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS 343 (379)
T ss_dssp EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT
T ss_pred eehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc
Confidence 666778999999999999755 66566678999999999888554
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
Probab=97.84 E-value=3.5e-06 Score=80.95 Aligned_cols=82 Identities=9% Similarity=0.091 Sum_probs=37.6
Q ss_pred CCCEEEccCCCCCCCCCccccCCCCcCEEeccCCc-CCCCCCccccCC----CCCCEeeccCCC-CCCCCchhhcCCCCc
Q 038019 90 YLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHND-FSGPVPRELGNL----KELTVLAFGTNN-FSGALPPELGNLAKL 163 (866)
Q Consensus 90 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~~~p~~l~~l----~~L~~L~Ls~N~-l~~~~p~~l~~l~~L 163 (866)
.|+.|||+++.++..--..+.++++|++|+|++|. |+..--..++.+ ++|++|+|++|. ++..--..+..+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 45666666655554433444555555555555553 432222223332 235555554442 433322334444444
Q ss_pred cEEEeecC
Q 038019 164 EQLYIDSC 171 (866)
Q Consensus 164 ~~L~L~~n 171 (866)
++|+|++|
T Consensus 142 ~~L~L~~c 149 (176)
T 3e4g_A 142 KYLFLSDL 149 (176)
T ss_dssp CEEEEESC
T ss_pred CEEECCCC
Confidence 44444444
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
Probab=97.76 E-value=1.1e-05 Score=77.53 Aligned_cols=83 Identities=14% Similarity=0.179 Sum_probs=48.7
Q ss_pred CCcCEEeccCCcCCCCCCccccCCCCCCEeeccCCC-CCCCCchhhcCC----CCccEEEeecCC-CCCCChhhhhcCcC
Q 038019 113 SRLMFLSFSHNDFSGPVPRELGNLKELTVLAFGTNN-FSGALPPELGNL----AKLEQLYIDSCG-AGGEIPSTFAKLRN 186 (866)
Q Consensus 113 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~~~p~~l~~l----~~L~~L~L~~n~-l~~~~p~~~~~l~~ 186 (866)
.+|++|||+++.|+..--..+.++++|++|+|++|. +++.--..++.+ ++|++|+|++|. ++..--..+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 467888888877765544556677777777777764 554333344443 256666666653 44433334455555
Q ss_pred CCEEEecCC
Q 038019 187 MQTLWASDN 195 (866)
Q Consensus 187 L~~L~L~~N 195 (866)
|++|+|+++
T Consensus 141 L~~L~L~~c 149 (176)
T 3e4g_A 141 LKYLFLSDL 149 (176)
T ss_dssp CCEEEEESC
T ss_pred CCEEECCCC
Confidence 666665555
|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=97.13 E-value=0.00014 Score=71.05 Aligned_cols=88 Identities=14% Similarity=0.029 Sum_probs=51.4
Q ss_pred ccCCCCCCCEEEccCC-CCCCC----CCccccCCCCcCEEeccCCcCCC----CCCccccCCCCCCEeeccCCCCCCCC-
Q 038019 84 ELVTLQYLTVLKIDQN-FFTGP----LPSFIGNLSRLMFLSFSHNDFSG----PVPRELGNLKELTVLAFGTNNFSGAL- 153 (866)
Q Consensus 84 ~l~~l~~L~~L~Ls~n-~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~----~~p~~l~~l~~L~~L~Ls~N~l~~~~- 153 (866)
.+.+-+.|+.|+|++| .|... +...+..-+.|+.|+|++|+|.. .+...+..-+.|++|+|+.|.|+..-
T Consensus 36 ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga 115 (197)
T 1pgv_A 36 LREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELL 115 (197)
T ss_dssp HHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHH
T ss_pred HHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHH
Confidence 3455567778888774 66432 33445566777777777777753 22334445567777777777765432
Q ss_pred ---chhhcCCCCccEEEeecC
Q 038019 154 ---PPELGNLAKLEQLYIDSC 171 (866)
Q Consensus 154 ---p~~l~~l~~L~~L~L~~n 171 (866)
...+..-+.|++|+|++|
T Consensus 116 ~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 116 ARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHHHHTTTTCCCSEEECCCC
T ss_pred HHHHHHHhhCCceeEEECCCC
Confidence 223444455666666543
|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=96.84 E-value=0.00027 Score=69.09 Aligned_cols=67 Identities=13% Similarity=0.075 Sum_probs=37.9
Q ss_pred ccCCCCcCEEeccCC-cCCC----CCCccccCCCCCCEeeccCCCCCCC----CchhhcCCCCccEEEeecCCCCC
Q 038019 109 IGNLSRLMFLSFSHN-DFSG----PVPRELGNLKELTVLAFGTNNFSGA----LPPELGNLAKLEQLYIDSCGAGG 175 (866)
Q Consensus 109 l~~l~~L~~L~Ls~N-~l~~----~~p~~l~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~L~~n~l~~ 175 (866)
+.+-+.|++|+|++| +|.. .+-..+..-+.|+.|+|++|.+... +...+..-+.|++|+|+.|.|+.
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~ 112 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTP 112 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCH
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCH
Confidence 445567888888775 6642 2234455566777777777766532 22333344555555555555543
|
| >4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A* | Back alignment and structure |
|---|
Probab=96.79 E-value=1.6e-05 Score=92.44 Aligned_cols=76 Identities=11% Similarity=-0.119 Sum_probs=41.2
Q ss_pred hhccCCCCCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcC
Q 038019 635 VLVGIGSKPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGR 713 (866)
Q Consensus 635 ~~~~~~~~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~ 713 (866)
++|++.+..||+..++...|+.|||+++.+...+ ......+||++|||||.+. +++..++|+||.|++++++.++.
T Consensus 360 IIHRDIKPeNILL~~dg~vKL~DFGlAr~~~~~~--~~~~t~vGTp~YmAPE~l~-g~~~~~~d~~s~g~~~~~l~~~~ 435 (569)
T 4azs_A 360 FWHDDVRPWNVMVDARQHARLIDFGSIVTTPQDC--SWPTNLVQSFFVFVNELFA-ENKSWNGFWRSAPVHPFNLPQPW 435 (569)
T ss_dssp CEESCCCGGGEEECTTSCEEECCCTTEESCC-----CCSHHHHHHHHHHHHHHC------------------CCCCTTH
T ss_pred ceeccCchHhEEECCCCCEEEeecccCeeCCCCC--ccccCceechhhccHHHhC-CCCCCcccccccccchhhhcccc
Confidence 3444444458888888888999999999886543 2223457999999999885 56788999999999888775553
|
| >3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* | Back alignment and structure |
|---|
Probab=96.07 E-value=0.0096 Score=54.15 Aligned_cols=55 Identities=16% Similarity=0.149 Sum_probs=26.4
Q ss_pred EEEEcccCcC-CCCCcccCCCCCCCEEEccCCCCCCCCCccccCCCCcCEEeccCCcC
Q 038019 69 KLRVYGLNKK-GVIPEELVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDF 125 (866)
Q Consensus 69 ~L~l~~~~l~-~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l 125 (866)
.++.++++++ ..+|..|. .+|++|+|++|+|+...+..|..+++|++|+|++|.+
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 4555555554 23443322 2455555555555544444444555555555555443
|
| >3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* | Back alignment and structure |
|---|
Probab=95.84 E-value=0.011 Score=53.69 Aligned_cols=57 Identities=21% Similarity=0.294 Sum_probs=47.4
Q ss_pred CEEEccCCCCC-CCCCccccCCCCcCEEeccCCcCCCCCCccccCCCCCCEeeccCCCCC
Q 038019 92 TVLKIDQNFFT-GPLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKELTVLAFGTNNFS 150 (866)
Q Consensus 92 ~~L~Ls~n~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 150 (866)
..++.+++.++ ..+|..+. .+|++|+|++|+|+..-+..|..+++|++|+|++|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 47899999986 35665433 46999999999999777788999999999999999875
|
| >2jwp_A Malectin, MGC80075; sugar binding, sugar binding protein; NMR {Xenopus laevis} PDB: 2k46_A* 2kr2_A* | Back alignment and structure |
|---|
Probab=95.47 E-value=0.03 Score=53.73 Aligned_cols=91 Identities=29% Similarity=0.347 Sum_probs=71.2
Q ss_pred CchhhhhhcccCCCCcceeeeeeeCCCceEEEeeeeecCCCCCcccccccCceEEEEEEcCeeeeeccccchhhCCCCce
Q 038019 456 RTPKLYQTSRISAGSLRYYGLGLVNGPYNVSLLFAETNFPDPSTERWESRGRRVFDIYVQGTLRWKDFDISKEAGGPNRA 535 (866)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 535 (866)
.|..++++.|....++++..-...++.|.++++|+|+.+. ..++++|+++++|...+++|++...+++ ..+
T Consensus 52 ~~~~lY~TaR~~~~~~tY~f~v~~~G~Y~VrLhF~ei~~~--------~~~~rvFdV~ing~~~l~~fdi~~~ag~-~~~ 122 (174)
T 2jwp_A 52 EDQVLYQTERYNEDSFGYDIPIKEEGEYVLVLKFAEVYFA--------QSQQKVFDVRVNGHTVVKDLDIFDRVGH-STA 122 (174)
T ss_dssp HHHHTTTCCCCCCSCEEEEEECCSCEEEEEEEEEECCSCC--------CSSSSCEEEEETTEEEEEEECHHHHHSS-SSC
T ss_pred CCchhhhhhccCCCCeEEEEEeCCCeEEEEEEEEeccccC--------CCCCeEeEEEECCEEeecCcCHHHhhCC-Cee
Confidence 3566888888877777776666667899999999998652 2688999999999999999999988876 456
Q ss_pred EEEEEEEEEccCcceeEeee
Q 038019 536 IIKNFSATVSENHLEIHLFW 555 (866)
Q Consensus 536 ~~~~~~~~~~~n~l~~~~~~ 555 (866)
+.+.|.+.+.++.+.++..+
T Consensus 123 ~~~~~~~~v~~~~l~i~~~~ 142 (174)
T 2jwp_A 123 HDEIIPISIKKGKLSVQGEV 142 (174)
T ss_dssp EEEEEEEEEETTEEEETTEE
T ss_pred EEEEEEEEEecCceeeeeee
Confidence 67778788777776665443
|
| >3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A* | Back alignment and structure |
|---|
Probab=92.85 E-value=0.003 Score=72.68 Aligned_cols=80 Identities=11% Similarity=-0.085 Sum_probs=59.0
Q ss_pred hccCCCCCcccCHHHHHHHhcCCccccccCCCCcee-----EEEeecCCCCccCceeeec--CCCCchhHHHHHHHHHHH
Q 038019 636 LVGIGSKPNIFGYAELRSATKDFNRSNKLGEGGYGP-----VYKVTANSYGYLAPEYAMR--GHLTEKADVFSFGVVALE 708 (866)
Q Consensus 636 ~~~~~~~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~-----vy~~~~gt~gY~aPE~~~~--~~~t~ksDVySfGvvLlE 708 (866)
.|......|++... ..++.|||.++.+....... ..+...||+.|||||++.. ..|+.++|+||..+-.+|
T Consensus 453 iHrDiKp~NILl~~--~~kL~DFGla~~~~~~~~~~~~~~~~~~~~~GT~~y~APEv~~~~~~~Y~~~~d~ws~vl~~l~ 530 (540)
T 3en9_A 453 IHNDLTTSNFIFDK--DLYIIDFGLGKISNLDEDKAVDLIVFKKAVLSTHHEKFDEIWERFLEGYKSVYDRWEIILELMK 530 (540)
T ss_dssp ECTTCCTTSEEESS--SEEECCCTTCEECCCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCTTHHHHHHHHH
T ss_pred ccCCCCHHHEEECC--eEEEEECccCEECCCccccccchhhhhhhhcCCCCcCCHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 33333444666665 88899999999886532111 1124578999999999976 678889999999999999
Q ss_pred HHhcCCCCC
Q 038019 709 IISGRASSD 717 (866)
Q Consensus 709 l~tg~~p~~ 717 (866)
.+.+|.++.
T Consensus 531 ~v~~r~rY~ 539 (540)
T 3en9_A 531 DVERRARYV 539 (540)
T ss_dssp HHHTCSCCC
T ss_pred HHHhccccC
Confidence 998887763
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 866 | ||||
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 2e-21 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 1e-18 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 2e-11 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 6e-09 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 6e-07 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 3e-21 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 2e-17 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 5e-15 | |
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 4e-20 | |
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 8e-10 | |
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 3e-07 | |
| d1ozna_ | 284 | c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept | 1e-17 | |
| d1ozna_ | 284 | c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept | 9e-10 | |
| d1uwha_ | 276 | d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) | 2e-17 | |
| d1lufa_ | 301 | d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus n | 8e-15 | |
| d1sm2a_ | 263 | d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Hu | 4e-14 | |
| d1r0pa_ | 311 | d.144.1.7 (A:) Hepatocyte growth factor receptor, | 1e-13 | |
| d1mqba_ | 283 | d.144.1.7 (A:) epha2 receptor tyrosine kinase {Hum | 2e-13 | |
| d1vjya_ | 303 | d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human | 1e-12 | |
| d1qpca_ | 272 | d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Hom | 5e-12 | |
| d1p4oa_ | 308 | d.144.1.7 (A:) Insulin-like growth factor 1 recept | 7e-12 | |
| d1byga_ | 262 | d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) | 2e-11 | |
| d1opja_ | 287 | d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mou | 3e-11 | |
| d1t46a_ | 311 | d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens | 3e-11 | |
| d1xkka_ | 317 | d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb- | 4e-11 | |
| d1xbba_ | 277 | d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human | 5e-11 | |
| d1fgka_ | 299 | d.144.1.7 (A:) Fibroblast growth factor receptor 1 | 7e-11 | |
| d1jpaa_ | 299 | d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mou | 9e-11 | |
| d1jpaa_ | 299 | d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mou | 1e-04 | |
| d1k2pa_ | 258 | d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Hum | 1e-10 | |
| d1fmka3 | 285 | d.144.1.7 (A:249-533) c-src tyrosine kinase {Human | 2e-10 | |
| d1u46a_ | 273 | d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Hum | 2e-10 | |
| d1u59a_ | 285 | d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Hum | 3e-10 | |
| d1rjba_ | 325 | d.144.1.7 (A:) Fl cytokine receptor {Human (Homo s | 4e-10 | |
| d1fvra_ | 309 | d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [ | 6e-10 | |
| d1t4ha_ | 270 | d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sa | 6e-10 | |
| d1ckia_ | 299 | d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus n | 2e-09 | |
| d2astb2 | 284 | c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 | 3e-09 | |
| d2astb2 | 284 | c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 | 4e-04 | |
| d1ywna1 | 299 | d.144.1.7 (A:818-1166) Vascular endothelial growth | 4e-09 | |
| d1p9ag_ | 266 | c.10.2.7 (G:) von Willebrand factor binding domain | 9e-09 | |
| d1p9ag_ | 266 | c.10.2.7 (G:) von Willebrand factor binding domain | 2e-04 | |
| d1p9ag_ | 266 | c.10.2.7 (G:) von Willebrand factor binding domain | 2e-04 | |
| d1mp8a_ | 273 | d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Huma | 1e-08 | |
| d1nvra_ | 271 | d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 { | 1e-08 | |
| d1s9ja_ | 322 | d.144.1.7 (A:) Dual specificity mitogen-activated | 2e-08 | |
| d2java1 | 269 | d.144.1.7 (A:3-271) Serine/threonine-protein kinas | 3e-08 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 4e-08 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 7e-06 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 0.001 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 0.004 | |
| d2j4za1 | 263 | d.144.1.7 (A:126-388) Aurora-related kinase 1 (aur | 9e-08 | |
| d2omxa2 | 199 | c.10.2.1 (A:37-235) Internalin B {Listeria monocyt | 3e-07 | |
| d2omxa2 | 199 | c.10.2.1 (A:37-235) Internalin B {Listeria monocyt | 0.004 | |
| d1csna_ | 293 | d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast | 4e-07 | |
| d1yhwa1 | 293 | d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [ | 5e-07 | |
| d1h6ta2 | 210 | c.10.2.1 (A:31-240) Internalin B {Listeria monocyt | 6e-07 | |
| d1h6ta2 | 210 | c.10.2.1 (A:31-240) Internalin B {Listeria monocyt | 1e-05 | |
| d1h6ta2 | 210 | c.10.2.1 (A:31-240) Internalin B {Listeria monocyt | 0.001 | |
| d1h6ua2 | 227 | c.10.2.1 (A:36-262) Internalin H {Listeria monocyt | 6e-07 | |
| d1h6ua2 | 227 | c.10.2.1 (A:36-262) Internalin H {Listeria monocyt | 6e-07 | |
| d1h6ua2 | 227 | c.10.2.1 (A:36-262) Internalin H {Listeria monocyt | 1e-04 | |
| d1dcea3 | 124 | c.10.2.2 (A:444-567) Rab geranylgeranyltransferase | 7e-07 | |
| d1dcea3 | 124 | c.10.2.2 (A:444-567) Rab geranylgeranyltransferase | 6e-05 | |
| d1dcea3 | 124 | c.10.2.2 (A:444-567) Rab geranylgeranyltransferase | 4e-04 | |
| d1dcea3 | 124 | c.10.2.2 (A:444-567) Rab geranylgeranyltransferase | 4e-04 | |
| d1dcea3 | 124 | c.10.2.2 (A:444-567) Rab geranylgeranyltransferase | 4e-04 | |
| d1uu3a_ | 288 | d.144.1.7 (A:) 3-phosphoinositide dependent protei | 1e-06 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 5e-06 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 8e-06 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 4e-04 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 6e-04 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 0.002 | |
| d1o6ya_ | 277 | d.144.1.7 (A:) Mycobacterial protein kinase PknB, | 7e-06 | |
| d1koaa2 | 350 | d.144.1.7 (A:5915-6264) Twitchin, kinase domain {C | 1e-05 | |
| d1blxa_ | 305 | d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (H | 1e-05 | |
| d1koba_ | 352 | d.144.1.7 (A:) Twitchin, kinase domain {California | 1e-05 | |
| d1jksa_ | 293 | d.144.1.7 (A:) Death-associated protein kinase, Da | 3e-05 | |
| d1u5ra_ | 309 | d.144.1.7 (A:) Serine/threonine protein kinase TAO | 5e-05 | |
| d1a9na_ | 162 | c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom | 5e-05 | |
| d1w8aa_ | 192 | c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga | 2e-04 | |
| d1xjda_ | 320 | d.144.1.7 (A:) Protein kinase C, theta type {Human | 2e-04 | |
| d1fota_ | 316 | d.144.1.7 (A:) cAMP-dependent PK, catalytic subuni | 3e-04 | |
| d1koha1 | 162 | c.10.2.3 (A:201-362) mRNA export factor tap {Human | 4e-04 | |
| d2jfla1 | 288 | d.144.1.7 (A:21-308) STE20-like serine/threonine-p | 6e-04 | |
| d1tkia_ | 321 | d.144.1.7 (A:) Titin, kinase domain {Human (Homo s | 6e-04 | |
| d2ozaa1 | 335 | d.144.1.7 (A:51-385) MAP kinase activated protein | 6e-04 | |
| d1a06a_ | 307 | d.144.1.7 (A:) Calmodulin-dependent protein kinase | 6e-04 | |
| d1gz8a_ | 298 | d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (H | 0.002 | |
| d1xwdc1 | 242 | c.10.2.7 (C:18-259) Follicle-stimulating hormone r | 0.003 | |
| d1ua2a_ | 299 | d.144.1.7 (A:) Cell division protein kinase 7, CDK | 0.003 | |
| d2ca6a1 | 344 | c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom | 0.004 |
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 94.7 bits (234), Expect = 2e-21
Identities = 51/230 (22%), Positives = 87/230 (37%), Gaps = 16/230 (6%)
Query: 108 FIGNLSRLMFLSFSHNDFSGPVPRELGNLKELTVLAFGTNNFSGALPPELGNLAKLEQLY 167
+ NL+ L L S N S L L L N S P + L++L
Sbjct: 170 PLANLTTLERLDISSNKVSDISVL--AKLTNLESLIATNNQISDITPLGILT--NLDELS 225
Query: 168 IDSCGAGGEIPSTFAKLRNMQTLWASDNPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPS 227
++ T A L N+ L ++N + P + TKL L+ N P
Sbjct: 226 LNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPL 281
Query: 228 SLSKLASLESLQMSDIYNVSSSLDFVMSLKNLTDLSLRNALITGTIPFGIGELQMLQILD 287
+ + + N + + +LKNLT L+L I+ P L LQ L
Sbjct: 282 AGLTALTN----LELNENQLEDISPISNLKNLTYLTLYFNNISDISPVS--SLTKLQRLF 335
Query: 288 LSFNNLTGQIPATLFNIDSLEYLFLGNNSLSGTLPDQKSENLQKIDLSHN 337
+ N ++ ++L N+ ++ +L G+N +S P + ++ L+
Sbjct: 336 FANNKVSD--VSSLANLTNINWLSAGHNQISDLTPLANLTRITQLGLNDQ 383
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 87.0 bits (214), Expect = 1e-18
Identities = 49/192 (25%), Positives = 79/192 (41%), Gaps = 28/192 (14%)
Query: 181 FAKLRNMQTLWASDNPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLESLQM 240
AKL N+++L A++N + P I T L L GN + +L+ L +L L +
Sbjct: 193 LAKLTNLESLIATNNQISDITPLGI--LTNLDELSLNGNQLKDI--GTLASLTNLTDLDL 248
Query: 241 SDIYNVSSSLDFVMSLKNLTDLSLRNALITGTIPFG--------------------IGEL 280
++ N S+L + L LT+L L I+ P I L
Sbjct: 249 AN--NQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNL 306
Query: 281 QMLQILDLSFNNLTGQIPATLFNIDSLEYLFLGNNSLSGTLPDQKSENLQKIDLSHNHLS 340
+ L L L FNN++ P + ++ L+ LF NN +S N+ + HN +S
Sbjct: 307 KNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSDVSSLANLTNINWLSAGHNQIS 364
Query: 341 GTFPLWVNSELQ 352
PL + +
Sbjct: 365 DLTPLANLTRIT 376
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 64.6 bits (156), Expect = 2e-11
Identities = 72/330 (21%), Positives = 109/330 (33%), Gaps = 34/330 (10%)
Query: 88 LQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHN---DFSGPVPRELGNLKELTVLAF 144
L + + T + +L ++ L G + L LT + F
Sbjct: 21 LAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKSIDG-----VEYLNNLTQINF 73
Query: 145 GTNNFSGALPPELGNLAKLEQLYIDSCGAGGEIPSTFAKLRNMQTLWASDNPFTGKIPDF 204
N + L NL KL + +++ P TL+ + + +
Sbjct: 74 SNNQLTD--ITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNL 131
Query: 205 ------------IGNWTKLKSLRFQGNSFQGPIPSSLSKLASLESLQ-MSDIYNVSSSLD 251
I + + L L G + L LA+L +L+ + N S +
Sbjct: 132 TNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDIS 191
Query: 252 FVMSLKNLTDLSLRNALITGTIPFGIGELQMLQILDLSFNNLTGQIPATLFNIDSLEYLF 311
+ L NL L N I+ P GI L L L+ N L TL ++ +L L
Sbjct: 192 VLAKLTNLESLIATNNQISDITPLGIL--TNLDELSLNGNQLKD--IGTLASLTNLTDLD 247
Query: 312 LGNNSLSGTLPDQKSENLQKIDLSHNHLSGTFPLWVNSELQMNLAVNNFKFDISNISVFP 371
L NN +S P L ++ L N +S PL + L N DIS IS
Sbjct: 248 LANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLK 307
Query: 372 GLNCLQRNFTCNR---NAPQCKLPSLCCLH 398
L L N +P L L L
Sbjct: 308 NLTYL--TLYFNNISDISPVSSLTKLQRLF 335
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 56.5 bits (135), Expect = 6e-09
Identities = 48/292 (16%), Positives = 91/292 (31%), Gaps = 19/292 (6%)
Query: 111 NLSRLMFLSFSHNDFSGPVP-RELGNLKELTVLAFGTNNFSGALPPELGNLAKLEQLYID 169
L+ M + + V +L + L G + G + L L Q+
Sbjct: 20 ALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDG-----VEYLNNLTQINFS 74
Query: 170 SCGAGGEIPSTFAKLRNMQTLWASDNPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSL 229
+ P L + + ++N P +L + P+
Sbjct: 75 NNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLK--- 129
Query: 230 SKLASLESLQMSDIYNVSSSLDFVMSLKNLTDLSLRNALITGTIPFGIGELQMLQILDLS 289
++ + S+++ + +L LT L + T + L L+ LD+S
Sbjct: 130 ------NLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDIS 183
Query: 290 FNNLTGQIPATLFNIDSLEYLFLGNNSLSGTLPDQKSENLQKIDLSHNHLSGTFPLWVNS 349
N ++ + +LE L NN +S P NL ++ L+ N L L +
Sbjct: 184 SNKVSDISVL--AKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLT 241
Query: 350 ELQMNLAVNNFKFDISNISVFPGLNCLQRNFTCNRNAPQCKLPSLCCLHPEM 401
L NN +++ +S L L+ N +
Sbjct: 242 NLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELN 293
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 50.4 bits (119), Expect = 6e-07
Identities = 23/93 (24%), Positives = 35/93 (37%), Gaps = 6/93 (6%)
Query: 55 CNCTFDNGATCHITKLRVYGLNKKGVIPEELVTLQYLTVLKIDQNFFTGPLPSFIGNLSR 114
++T L +Y N + P + +L L L N + S + NL+
Sbjct: 297 LEDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSDV--SSLANLTN 352
Query: 115 LMFLSFSHNDFSGPVPRELGNLKELTVLAFGTN 147
+ +LS HN S P L NL +T L
Sbjct: 353 INWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 93.2 bits (230), Expect = 3e-21
Identities = 60/330 (18%), Positives = 107/330 (32%), Gaps = 63/330 (19%)
Query: 55 CNCTFDNGATCHITKLRVYGLNKKGVIPEELVTLQYLTVLKIDQNFFTGPLPSFIGNLSR 114
C C C L +P++L +L + N T NL
Sbjct: 8 CQCHLR-VVQCSDLGLEK--------VPKDLPP--DTALLDLQNNKITEIKDGDFKNLKN 56
Query: 115 LMFLSFSHNDFSGPVPRELGNLKELTVLAFGTNNFSGALPPELG---------------- 158
L L +N S P L +L L N LP ++
Sbjct: 57 LHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKE-LPEKMPKTLQELRVHENEITKV 115
Query: 159 --------NLAKLEQLYIDSCGAGGEIPSTFAKLRNMQTLWASDNPFTGKIPDFIGNWTK 210
N + +L + + G F ++ + + +D T IP G
Sbjct: 116 RKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQ--GLPPS 172
Query: 211 LKSLRFQGNSFQGPIPSSLSKLASLESLQMSDIYNVSSSLDFVMSLKNLTDLSLRNALIT 270
L L GN +SL L +L L +S + + + +L +L L N +
Sbjct: 173 LTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV 232
Query: 271 GTIPFGIGELQMLQILDLSFNNLTGQIPATLFNIDSLEYLFLGNNSLSGTLPDQKSENLQ 330
+P G+ + + +Q++ L NN++ +G+N + K +
Sbjct: 233 -KVPGGLADHKYIQVVYLHNNNISA----------------IGSNDFCPPGYNTKKASYS 275
Query: 331 KIDLSHNHLS------GTFP-LWVNSELQM 353
+ L N + TF ++V + +Q+
Sbjct: 276 GVSLFSNPVQYWEIQPSTFRCVYVRAAVQL 305
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 81.6 bits (200), Expect = 2e-17
Identities = 53/260 (20%), Positives = 103/260 (39%), Gaps = 10/260 (3%)
Query: 129 VPRELGNLKELTVLAFGTNNFSGALPPELGNLAKLEQLYIDSCGAGGEIPSTFAKLRNMQ 188
VP++L + +L N + + NL L L + + P FA L ++
Sbjct: 25 VPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLE 82
Query: 189 TLWASDNPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLESLQMSDIYNVSS 248
L+ S N +L+ + + + + L+++ +E L + + +
Sbjct: 83 RLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVE-LGTNPLKSSGI 141
Query: 249 SLDFVMSLKNLTDLSLRNALITGTIPFGIGELQMLQILDLSFNNLTGQIPATLFNIDSLE 308
+K L+ + + + IT TIP G+ L L L N +T A+L +++L
Sbjct: 142 ENGAFQGMKKLSYIRIADTNIT-TIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLA 198
Query: 309 YLFLGNNSLSGTLPD--QKSENLQKIDLSHNHLSGTFPLWVNSEL--QMNLAVNNFKFDI 364
L L NS+S + +L+++ L++N L + + + L NN
Sbjct: 199 KLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIG 258
Query: 365 SNISVFPGLNCLQRNFTCNR 384
SN PG N + +++
Sbjct: 259 SNDFCPPGYNTKKASYSGVS 278
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 74.7 bits (182), Expect = 5e-15
Identities = 31/223 (13%), Positives = 66/223 (29%), Gaps = 4/223 (1%)
Query: 176 EIPSTFAKLRNMQTLWASDNPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASL 235
++P + L +N T N L +L N P + + L L
Sbjct: 24 KVPKDLPP--DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKL 81
Query: 236 ESLQMSDIYNVSSSLDFVMSLKNLTDLSLRNALITGTIPFGIGELQMLQILDLSFNNLTG 295
E L +S +L+ L + ++ F ++ L + +G
Sbjct: 82 ERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSV-FNGLNQMIVVELGTNPLKSSG 140
Query: 296 QIPATLFNIDSLEYLFLGNNSLSGTLPDQKSENLQKIDLSHNHLSGTFPLWVNSELQMNL 355
+ L Y+ + + +++ T+P +L ++ L N ++ + +
Sbjct: 141 IENGAFQGMKKLSYIRIADTNIT-TIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAK 199
Query: 356 AVNNFKFDISNISVFPGLNCLQRNFTCNRNAPQCKLPSLCCLH 398
+F + + R N N L
Sbjct: 200 LGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHK 242
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 89.8 bits (221), Expect = 4e-20
Identities = 81/319 (25%), Positives = 123/319 (38%), Gaps = 26/319 (8%)
Query: 7 VRALNSILQQWDAPAV-PLWNISGNPCSGSALNATDSEFESPNNNPAIVCNCTFDNGATC 65
+AL I + P W + + C+ + ++C+ + T
Sbjct: 8 KQALLQIKKDLGNPTTLSSWLPTTDCCNRTW--------------LGVLCD---TDTQTY 50
Query: 66 HITKLRVYGLNKKGV--IPEELVTLQYLTVLKIDQN-FFTGPLPSFIGNLSRLMFLSFSH 122
+ L + GLN IP L L YL L I GP+P I L++L +L +H
Sbjct: 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITH 110
Query: 123 NDFSGPVPRELGNLKELTVLAFGTNNFSGALPPELGNLAKLEQLYIDSCGAGGEI-PSTF 181
+ SG +P L +K L L F N SG LPP + +L L + D G I S
Sbjct: 111 TNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYG 170
Query: 182 AKLRNMQTLWASDNPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLESLQMS 241
+ + ++ S N TGKIP N + S + +
Sbjct: 171 SFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAK 230
Query: 242 DIYNVSSSLDFVMSLKNLTDLSLRNALITGTIPFGIGELQMLQILDLSFNNLTGQIPATL 301
+ + N DL N I GT+P G+ +L+ L L++SFNNL G+IP
Sbjct: 231 NSLAFDLGKVGLSKNLNGLDLR--NNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QG 287
Query: 302 FNIDSLEYL-FLGNNSLSG 319
N+ + + N L G
Sbjct: 288 GNLQRFDVSAYANNKCLCG 306
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 58.6 bits (140), Expect = 8e-10
Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 3/62 (4%)
Query: 96 IDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKELTVLAFGTNNF--SGAL 153
+ N G LP + L L L+ S N+ G +P + GNL+ V A+ N L
Sbjct: 251 LRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNKCLCGSPL 309
Query: 154 PP 155
P
Sbjct: 310 PA 311
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 50.9 bits (120), Expect = 3e-07
Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
Query: 175 GEIPSTFAKLRNMQTLWASDNPFTGKIPDFIGNWTKLKSLRFQGNSFQ--GPIPS 227
G +P +L+ + +L S N G+IP GN + + N P+P+
Sbjct: 258 GTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGSPLPA 311
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 81.8 bits (200), Expect = 1e-17
Identities = 55/289 (19%), Positives = 88/289 (30%), Gaps = 11/289 (3%)
Query: 54 VCNCTFDNGATCHITKLRVYGLNKKGVIPEELVTLQYLTVLKIDQNFFTGPLPSFIGNLS 113
C C + T + GL +P + + + N + +
Sbjct: 5 ACVCYNEPKVTTSCPQQ---GLQA---VPVGIPA--ASQRIFLHGNRISHVPAASFRACR 56
Query: 114 RLMFLSFSHNDFSGPVPRELGNLKELTVLAFGTNNFSGALPP-ELGNLAKLEQLYIDSCG 172
L L N + L L L N ++ P L +L L++D CG
Sbjct: 57 NLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCG 116
Query: 173 AGGEIPSTFAKLRNMQTLWASDNPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKL 232
P F L +Q L+ DN D + L L GN + L
Sbjct: 117 LQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGL 176
Query: 233 ASLESLQMSDIYNVSSSLDFVMSLKNLTDLSLRNALITGTIPFGIGELQMLQILDLSFNN 292
SL+ L + L L L L ++ + L+ LQ L L+ N
Sbjct: 177 HSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNP 236
Query: 293 LTGQIPATLFNIDSLEYLFLGNNSLSGTLPDQKSENLQKIDLSHNHLSG 341
A L+ ++ + +LP + + L+ N L G
Sbjct: 237 WVCDCRARPL-WAWLQKFRGSSSEVPCSLPQRLA-GRDLKRLAANDLQG 283
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 58.3 bits (139), Expect = 9e-10
Identities = 36/238 (15%), Positives = 69/238 (28%), Gaps = 31/238 (13%)
Query: 152 ALPPELGNLAKLEQLYIDSCGAGGEIPSTFAKLRNMQTLWASDNPFTGKIPDFIGNWTKL 211
A+P + +++++ ++F RN+ LW N L
Sbjct: 25 AVPVGIPAA--SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALL 82
Query: 212 KSLRFQGNSFQGPI-PSSLSKLASLESLQMSDIYNVSSSLDFVMSLKNLTDLSLRNALIT 270
+ L N+ + P++ L L +L + L L L L++ +
Sbjct: 83 EQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ 142
Query: 271 GTIPFGIGELQMLQILDLSFNNLTGQIPATLFNIDSLEYLFLGNNSLSGTLPD------- 323
+L L L L N ++ + SL+ L L N ++ P
Sbjct: 143 ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGR 202
Query: 324 -------------------QKSENLQKIDLSHNHLSGTFPL-WVNSELQ-MNLAVNNF 360
LQ + L+ N + + LQ + +
Sbjct: 203 LMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEV 260
|
| >d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 276 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: B-Raf kinase species: Human (Homo sapiens) [TaxId: 9606]
Score = 81.2 bits (200), Expect = 2e-17
Identities = 26/147 (17%), Positives = 59/147 (40%), Gaps = 14/147 (9%)
Query: 642 KP-NIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAM---RGHLTEKA 697
K NIF + +L DF + ++ + S ++APE + + ++
Sbjct: 131 KSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQFEQLSGSILWMAPEVIRMQDKNPYSFQS 190
Query: 698 DVFSFGVVALEIISGRASSDKSLDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEAL 757
DV++FG+V E+++G+ + ++I + G + P L++
Sbjct: 191 DVYAFGIVLYELMTGQLPYSNINNRDQIIFMVGR----------GYLSPDLSKVRSNCPK 240
Query: 758 RVIGVALLCTQTSPMMRPPMSRVVAML 784
+ + C + RP +++A +
Sbjct: 241 AMKRLMAECLKKKRDERPLFPQILASI 267
|
| >d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 301 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Musk tyrosine kinase species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 74.1 bits (181), Expect = 8e-15
Identities = 25/128 (19%), Positives = 43/128 (33%), Gaps = 14/128 (10%)
Query: 657 DFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASS 716
DF S + Y A ++ PE T ++DV+++GVV EI S
Sbjct: 183 DFGLSRNIYSADYYKADGNDAIPIRWMPPESIFYNRYTTESDVWAYGVVLWEIFSYGLQP 242
Query: 717 DKSLDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPP 776
+ E++ + D + + L + + LC P RP
Sbjct: 243 YYGMAHEEVIYY--------------VRDGNILACPENCPLELYNLMRLCWSKLPADRPS 288
Query: 777 MSRVVAML 784
+ +L
Sbjct: 289 FCSIHRIL 296
|
| >d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]} Length = 263 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Tyrosine-protein kinase Itk/Tsk species: Human (Homo sapiens) [TaxId: 9606]
Score = 70.9 bits (173), Expect = 4e-14
Identities = 26/113 (23%), Positives = 44/113 (38%), Gaps = 14/113 (12%)
Query: 679 SYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSLDMEKIYLLEWAWNLHENN 738
+ +PE + K+DV+SFGV+ E+ S ++ ++ + +
Sbjct: 165 PVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRSNSEVV--------EDIS 216
Query: 739 QSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLAGDIEVG 791
F L P L + V + C + P RP SR++ LA E G
Sbjct: 217 TGFRLYKPRL------ASTHVYQIMNHCWKERPEDRPAFSRLLRQLAEIAESG 263
|
| >d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]} Length = 311 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Hepatocyte growth factor receptor, c-MET species: Human (Homo sapiens) [TaxId: 9606]
Score = 70.6 bits (172), Expect = 1e-13
Identities = 28/130 (21%), Positives = 52/130 (40%), Gaps = 16/130 (12%)
Query: 657 DFNRSNKLGEGGYGPVYKVTAN--SYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRA 714
DF + + + + V+ T ++A E T K+DV+SFGV+ E+++ A
Sbjct: 173 DFGLARDMYDKEFDSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGA 232
Query: 715 SSDKSLDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMR 774
++ + L + + L+ P E+ V+ L C MR
Sbjct: 233 PPYPDVN-----TFDITVYLLQGRR---LLQP---EYCPDPLYEVM---LKCWHPKAEMR 278
Query: 775 PPMSRVVAML 784
P S +V+ +
Sbjct: 279 PSFSELVSRI 288
|
| >d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 283 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: epha2 receptor tyrosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Score = 69.9 bits (170), Expect = 2e-13
Identities = 20/112 (17%), Positives = 37/112 (33%), Gaps = 14/112 (12%)
Query: 679 SYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSLDMEKIYLLEWAWNLHENN 738
+ APE T +DV+SFG+V E+++ L ++
Sbjct: 176 PIRWTAPEAISYRKFTSASDVWSFGIVMWEVMTYGERPYWELSNHEVMKA---------- 225
Query: 739 QSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLAGDIEV 790
+ D + + + C Q RP + +V++L I
Sbjct: 226 ----INDGFRLPTPMDCPSAIYQLMMQCWQQERARRPKFADIVSILDKLIRA 273
|
| >d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]} Length = 303 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Type I TGF-beta receptor R4 species: Human (Homo sapiens) [TaxId: 9606]
Score = 67.2 bits (163), Expect = 1e-12
Identities = 21/118 (17%), Positives = 40/118 (33%), Gaps = 12/118 (10%)
Query: 679 SYGYLAPEY------AMRGHLTEKADVFSFGVVALEIISGRASSDKSLDMEKIY----LL 728
+ Y+APE ++AD+++ G+V EI + D + Y
Sbjct: 175 TKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPS 234
Query: 729 EWAWNLHENNQSFGLVDPTLTE-FNDKEALR-VIGVALLCTQTSPMMRPPMSRVVAML 784
+ + + P + + EALR + + C + R R+ L
Sbjct: 235 DPSVEEMRKVVCEQKLRPNIPNRWQSCEALRVMAKIMRECWYANGAARLTALRIKKTL 292
|
| >d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]} Length = 272 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Lymphocyte kinase (lck) species: Human (Homo sapiens) [TaxId: 9606]
Score = 65.1 bits (158), Expect = 5e-12
Identities = 32/145 (22%), Positives = 53/145 (36%), Gaps = 18/145 (12%)
Query: 642 KP-NIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVF 700
+ NI L DF + + + Y + + APE G T K+DV+
Sbjct: 136 RAANILVSDTLSCKIADFGLARLIEDNEY-TAREGAKFPIKWTAPEAINYGTFTIKSDVW 194
Query: 701 SFGVVALEIIS-GRASSDKSLDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRV 759
SFG++ EI++ GR + E I LE + + D +
Sbjct: 195 SFGILLTEIVTHGRIPYPGMTNPEVIQNLERGYRM---------------VRPDNCPEEL 239
Query: 760 IGVALLCTQTSPMMRPPMSRVVAML 784
+ LC + P RP + ++L
Sbjct: 240 YQLMRLCWKERPEDRPTFDYLRSVL 264
|
| >d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 308 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Insulin-like growth factor 1 receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 65.3 bits (158), Expect = 7e-12
Identities = 27/130 (20%), Positives = 51/130 (39%), Gaps = 14/130 (10%)
Query: 662 NKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSLD 721
+ E Y +++PE G T +DV+SFGVV EI + + L
Sbjct: 181 RDIYETDYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGLS 240
Query: 722 MEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVV 781
E++ +++ L + D + + +C Q +P MRP ++
Sbjct: 241 NEQVLRF--------------VMEGGLLDKPDNCPDMLFELMRMCWQYNPKMRPSFLEII 286
Query: 782 AMLAGDIEVG 791
+ + ++E G
Sbjct: 287 SSIKEEMEPG 296
|
| >d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]} Length = 262 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Carboxyl-terminal src kinase (csk) species: Human (Homo sapiens) [TaxId: 9606]
Score = 63.1 bits (153), Expect = 2e-11
Identities = 20/106 (18%), Positives = 33/106 (31%), Gaps = 14/106 (13%)
Query: 679 SYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSLDMEKIYLLEWAWNLHENN 738
+ APE + K+DV+SFG++ EI S + ++ + E
Sbjct: 163 PVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLKDVV------PRVEKG 216
Query: 739 QSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAML 784
D + V C MRP ++ L
Sbjct: 217 YKMDAPDGCPPAVYE--------VMKNCWHLDAAMRPSFLQLREQL 254
|
| >d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]} Length = 287 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Abelsone tyrosine kinase (abl) species: Mouse (Mus musculus) [TaxId: 10090]
Score = 62.8 bits (152), Expect = 3e-11
Identities = 27/128 (21%), Positives = 47/128 (36%), Gaps = 15/128 (11%)
Query: 657 DFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASS 716
DF S + Y + + APE + K+DV++FGV+ EI + S
Sbjct: 158 DFGLSRLMTGDTY-TAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSP 216
Query: 717 DKSLDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPP 776
+D+ ++Y L E + E + +V + C Q +P RP
Sbjct: 217 YPGIDLSQVY------ELLEKDYRM--------ERPEGCPEKVYELMRACWQWNPSDRPS 262
Query: 777 MSRVVAML 784
+ +
Sbjct: 263 FAEIHQAF 270
|
| >d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 311 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: c-KIT receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 62.9 bits (152), Expect = 3e-11
Identities = 22/149 (14%), Positives = 48/149 (32%), Gaps = 14/149 (9%)
Query: 642 KP-NIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVF 700
NI + DF + + V ++APE T ++DV+
Sbjct: 172 AARNILLTHGRITKICDFGLARDIKNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVW 231
Query: 701 SFGVVALEIISGRASSDKSLDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVI 760
S+G+ E+ S +S + ++ + + + + +
Sbjct: 232 SYGIFLWELFSLGSSPYPGMPVD-----SKFYKMIKEGFRM--------LSPEHAPAEMY 278
Query: 761 GVALLCTQTSPMMRPPMSRVVAMLAGDIE 789
+ C P+ RP ++V ++ I
Sbjct: 279 DIMKTCWDADPLKRPTFKQIVQLIEKQIS 307
|
| >d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 317 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: EGF receptor tyrosine kinase, Erbb-1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 62.9 bits (152), Expect = 4e-11
Identities = 19/128 (14%), Positives = 40/128 (31%), Gaps = 14/128 (10%)
Query: 657 DFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASS 716
DF + LG + ++A E + T ++DV+S+GV E+++ +
Sbjct: 154 DFGLAKLLGAEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKP 213
Query: 717 DKSLDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPP 776
+ +I + L + V + + C RP
Sbjct: 214 YDGIPASEISSI--------------LEKGERLPQPPICTIDVYMIMVKCWMIDADSRPK 259
Query: 777 MSRVVAML 784
++
Sbjct: 260 FRELIIEF 267
|
| >d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]} Length = 277 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Tyrosine-protein kinase SYK species: Human (Homo sapiens) [TaxId: 9606]
Score = 62.0 bits (150), Expect = 5e-11
Identities = 25/143 (17%), Positives = 49/143 (34%), Gaps = 25/143 (17%)
Query: 642 KPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFS 701
K + FG ++ A +++ ++ G+ + APE + K+DV+S
Sbjct: 147 KISDFGLSKALRADENYYKAQTHGKW-----------PVKWYAPECINYYKFSSKSDVWS 195
Query: 702 FGVVALEIISGRASSDKSLDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIG 761
FGV+ E S + + ++ L + + +E ++
Sbjct: 196 FGVLMWEAFSYGQKPYRGMKGSEVT-----AMLEKGER------MGCPAGCPREMYDLM- 243
Query: 762 VALLCTQTSPMMRPPMSRVVAML 784
LC RP + V L
Sbjct: 244 --NLCWTYDVENRPGFAAVELRL 264
|
| >d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 299 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Fibroblast growth factor receptor 1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 61.8 bits (149), Expect = 7e-11
Identities = 24/127 (18%), Positives = 44/127 (34%), Gaps = 14/127 (11%)
Query: 658 FNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSD 717
F + + Y ++APE T ++DV+SFGV+ EI + S
Sbjct: 179 FGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPY 238
Query: 718 KSLDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPM 777
+ +E+++ L L + + + + C P RP
Sbjct: 239 PGVPVEELFKL--------------LKEGHRMDKPSNCTNELYMMMRDCWHAVPSQRPTF 284
Query: 778 SRVVAML 784
++V L
Sbjct: 285 KQLVEDL 291
|
| >d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]} Length = 299 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: ephb2 receptor tyrosine kinase species: Mouse (Mus musculus) [TaxId: 10090]
Score = 61.7 bits (149), Expect = 9e-11
Identities = 31/145 (21%), Positives = 48/145 (33%), Gaps = 19/145 (13%)
Query: 644 NIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYG---YLAPEYAMRGHLTEKADVF 700
NI + L DF S L + P Y + APE T +DV+
Sbjct: 158 NILVNSNLVCKVSDFGLSRFLEDDTSDPTYTSALGGKIPIRWTAPEAIQYRKFTSASDVW 217
Query: 701 SFGVVALEIIS-GRASSDKSLDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRV 759
S+G+V E++S G + + I +E + L +
Sbjct: 218 SYGIVMWEVMSYGERPYWDMTNQDVINAIEQDYRL---------------PPPMDCPSAL 262
Query: 760 IGVALLCTQTSPMMRPPMSRVVAML 784
+ L C Q RP ++V L
Sbjct: 263 HQLMLDCWQKDRNHRPKFGQIVNTL 287
|
| >d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]} Length = 299 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: ephb2 receptor tyrosine kinase species: Mouse (Mus musculus) [TaxId: 10090]
Score = 42.4 bits (99), Expect = 1e-04
Identities = 9/53 (16%), Positives = 17/53 (32%), Gaps = 9/53 (16%)
Query: 646 FGYAELRSATKDFNRS---------NKLGEGGYGPVYKVTANSYGYLAPEYAM 689
F + + A ++F + +G G +G V G A+
Sbjct: 7 FTFEDPNEAVREFAKEIDISCVKIEQVIGAGEFGEVCSGHLKLPGKREIFVAI 59
|
| >d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Bruton's tyrosine kinase (Btk) species: Human (Homo sapiens) [TaxId: 9606]
Score = 60.5 bits (146), Expect = 1e-10
Identities = 23/142 (16%), Positives = 46/142 (32%), Gaps = 17/142 (11%)
Query: 644 NIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFG 703
N + DF S + + Y + + PE M + K+D+++FG
Sbjct: 130 NCLVNDQGVVKVSDFGLSRYVLDDEY-TSSVGSKFPVRWSPPEVLMYSKFSSKSDIWAFG 188
Query: 704 VVALEIIS-GRASSDKSLDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGV 762
V+ EI S G+ ++ + E + L + +V +
Sbjct: 189 VLMWEIYSLGKMPYERFTNSETAEHIAQGLRL---------------YRPHLASEKVYTI 233
Query: 763 ALLCTQTSPMMRPPMSRVVAML 784
C RP +++ +
Sbjct: 234 MYSCWHEKADERPTFKILLSNI 255
|
| >d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 285 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: c-src tyrosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Score = 60.5 bits (146), Expect = 2e-10
Identities = 27/154 (17%), Positives = 47/154 (30%), Gaps = 29/154 (18%)
Query: 633 EEVLVGIGSKPNI--FGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMR 690
+LVG + FG A L + R + APE A+
Sbjct: 142 ANILVGENLVCKVADFGLARLIEDNEYTARQGAKF-------------PIKWTAPEAALY 188
Query: 691 GHLTEKADVFSFGVVALEIISGRASSDKSLDMEKIYLLEWAWNLHENNQSFGLVDPTLTE 750
G T K+DV+SFG++ E+ + + ++ +
Sbjct: 189 GRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQ--------------VERGYRMP 234
Query: 751 FNDKEALRVIGVALLCTQTSPMMRPPMSRVVAML 784
+ + + C + P RP + A L
Sbjct: 235 CPPECPESLHDLMCQCWRKEPEERPTFEYLQAFL 268
|
| >d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Activated CDC42 kinase 1, ACK1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 59.8 bits (144), Expect = 2e-10
Identities = 20/142 (14%), Positives = 41/142 (28%), Gaps = 14/142 (9%)
Query: 644 NIFGYAELRSATKDFNRSNKLGEGG-YGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSF 702
N+ DF L + + + + + + APE + +D + F
Sbjct: 141 NLLLATRDLVKIGDFGLMRALPQNDDHYVMQEHRKVPFAWCAPESLKTRTFSHASDTWMF 200
Query: 703 GVVALEIISGRASSDKSLDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGV 762
GV E+ + L+ +I + + + + + V
Sbjct: 201 GVTLWEMFTYGQEPWIGLNGSQIL-----HKIDKEGERL--------PRPEDCPQDIYNV 247
Query: 763 ALLCTQTSPMMRPPMSRVVAML 784
+ C P RP + L
Sbjct: 248 MVQCWAHKPEDRPTFVALRDFL 269
|
| >d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]} Length = 285 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Tyrosine-protein kinase ZAP-70 species: Human (Homo sapiens) [TaxId: 9606]
Score = 60.1 bits (145), Expect = 3e-10
Identities = 22/145 (15%), Positives = 40/145 (27%), Gaps = 16/145 (11%)
Query: 642 KP-NIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTAN-SYGYLAPEYAMRGHLTEKADV 699
N+ + DF S LG + + APE + ++DV
Sbjct: 136 AARNVLLVNRHYAKISDFGLSKALGADDSYYTARSAGKWPLKWYAPECINFRKFSSRSDV 195
Query: 700 FSFGVVALEIISGRASSDKSLDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRV 759
+S+GV E +S K + ++ + E + +
Sbjct: 196 WSYGVTMWEALSYGQKPYKKMKGPEVMAF--------------IEQGKRMECPPECPPEL 241
Query: 760 IGVALLCTQTSPMMRPPMSRVVAML 784
+ C RP V +
Sbjct: 242 YALMSDCWIYKWEDRPDFLTVEQRM 266
|
| >d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 325 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Fl cytokine receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 59.8 bits (144), Expect = 4e-10
Identities = 24/145 (16%), Positives = 47/145 (32%), Gaps = 14/145 (9%)
Query: 642 KP-NIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVF 700
N+ DF + + V ++APE G T K+DV+
Sbjct: 191 AARNVLVTHGKVVKICDFGLARDIMSDSNYVVRGNARLPVKWMAPESLFEGIYTIKSDVW 250
Query: 701 SFGVVALEIISGRASSDKSLDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVI 760
S+G++ EI S + + ++ + + L +N + +E ++
Sbjct: 251 SYGILLWEIFSLGVNPYPGIPVDANF-----YKLIQNG-----FKMDQPFYATEEIYIIM 300
Query: 761 GVALLCTQTSPMMRPPMSRVVAMLA 785
C RP + + L
Sbjct: 301 ---QSCWAFDSRKRPSFPNLTSFLG 322
|
| >d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 309 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Tie2 kinase species: Human (Homo sapiens) [TaxId: 9606]
Score = 59.0 bits (142), Expect = 6e-10
Identities = 20/106 (18%), Positives = 39/106 (36%), Gaps = 14/106 (13%)
Query: 679 SYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSLDMEKIYLLEWAWNLHENN 738
++A E T +DV+S+GV+ EI+S + + ++Y L +
Sbjct: 189 PVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMTCAELY-----EKLPQG- 242
Query: 739 QSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAML 784
D E ++ C + P RP ++++ L
Sbjct: 243 -----YRLEKPLNCDDEVYDLM---RQCWREKPYERPSFAQILVSL 280
|
| >d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 270 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Protein kinase wnk1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 58.5 bits (141), Expect = 6e-10
Identities = 18/112 (16%), Positives = 39/112 (34%), Gaps = 14/112 (12%)
Query: 670 GPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSLDMEKIYLLE 729
K + ++APE E DV++FG+ LE+ + + + +IY
Sbjct: 167 ASFAKAVIGTPEFMAPEM-YEEKYDESVDVYAFGMCMLEMATSEYPYSECQNAAQIY--- 222
Query: 730 WAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVV 781
+ G+ + + E +I C + + R + ++
Sbjct: 223 -------RRVTSGVKPASFDKVAIPEVKEII---EGCIRQNKDERYSIKDLL 264
|
| >d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 299 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Casein kinase-1, CK1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 57.5 bits (138), Expect = 2e-09
Identities = 17/134 (12%), Positives = 32/134 (23%), Gaps = 13/134 (9%)
Query: 656 KDFNRSNKLGEGG-----YGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEII 710
DF + K + K + Y + + + + D+ S G V +
Sbjct: 148 IDFGLAKKYRDARTHQHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFN 207
Query: 711 SGRASSDKSLDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTS 770
G K E + L + E + C
Sbjct: 208 LGSLPWQGLKAATKRQKYERISEKKMST-----PIEVLCKGYPSEFATYL---NFCRSLR 259
Query: 771 PMMRPPMSRVVAML 784
+P S + +
Sbjct: 260 FDDKPDYSYLRQLF 273
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 57.0 bits (136), Expect = 3e-09
Identities = 42/276 (15%), Positives = 84/276 (30%), Gaps = 40/276 (14%)
Query: 68 TKLRVYGLNKKGVIPEELVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSG 127
L + G N + L++ + + ++F PL R+ + S++
Sbjct: 3 QTLDLTGKNLHPDVTGRLLSQG-VIAFRCPRSFMDQPLAEHFSPF-RVQHMDLSNSVIEV 60
Query: 128 -PVPRELGNLKELTVLAFGTNNFSGALPPELGNLAKLEQLYIDSC-----GAGGEIPSTF 181
+ L +L L+ S + L + L +L + C A + S+
Sbjct: 61 STLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSC 120
Query: 182 AKLRNMQTLWASDNPFTGKIPDFIGNWTKLKSLRFQG----------------------- 218
++L + W D + L G
Sbjct: 121 SRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHL 180
Query: 219 -----NSFQGPIPSSLSKLASLESLQMSDIYNVS-SSLDFVMSLKNLTDLSLRNALITGT 272
+ +L L+ L +S Y++ +L + + L L + + GT
Sbjct: 181 DLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGT 240
Query: 273 IPFGIGELQMLQILDLSFNNLTGQIPATLFNIDSLE 308
+ L LQI + ++ T T+ N + E
Sbjct: 241 LQLLKEALPHLQI---NCSHFTTIARPTIGNKKNQE 273
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.9 bits (94), Expect = 4e-04
Identities = 18/121 (14%), Positives = 43/121 (35%), Gaps = 7/121 (5%)
Query: 284 QILDLSFNNLTGQIPATLFNIDSLEYLFLGNNSLSGTLPDQ-KSENLQKIDLSHNHLSGT 342
Q LDL+ NL + L + + + + L + +Q +DLS++ + +
Sbjct: 3 QTLDLTGKNLHPDVTGRLLS-QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVS 61
Query: 343 FPLWVNSELQ--MNLAVNNFKFD---ISNISVFPGLNCLQRNFTCNRNAPQCKLPSLCCL 397
+ S+ NL++ + ++ ++ L L + + + C
Sbjct: 62 TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCS 121
Query: 398 H 398
Sbjct: 122 R 122
|
| >d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]} Length = 299 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Vascular endothelial growth factor receptor 2 (kdr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 56.4 bits (135), Expect = 4e-09
Identities = 28/127 (22%), Positives = 42/127 (33%), Gaps = 13/127 (10%)
Query: 658 FNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSD 717
F + + + ++APE T ++DV+SFGV+ EI S AS
Sbjct: 178 FGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPY 237
Query: 718 KSLDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPM 777
+ ++ E + D T E L C P RP
Sbjct: 238 PGVKID-----EEFCRRLKEGTRMRAPDYTTPEMYQ--------TMLDCWHGEPSQRPTF 284
Query: 778 SRVVAML 784
S +V L
Sbjct: 285 SELVEHL 291
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 55.1 bits (131), Expect = 9e-09
Identities = 33/209 (15%), Positives = 63/209 (30%), Gaps = 7/209 (3%)
Query: 109 IGNLSRLMFLSFSHNDFSGPVPRELGNLKELTVLAFGTNNFSGALPPELGNLAKLEQLYI 168
+ ++ + ++ + + +P +L K+ T+L N L +L QL +
Sbjct: 6 VSKVASHLEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNL 62
Query: 169 DSCGAGGEIPSTFAKLRNMQTLWASDNPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSS 228
D + L + + + T L + S
Sbjct: 63 DRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRG 122
Query: 229 LSKLASLESLQMSDIYNVSSSLDFVMSLKNLTDLSLRNALITGTIPFGIGELQMLQILDL 288
L+ +++ + L L+ N +T + L+ L L L
Sbjct: 123 -LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN--LTELPAGLLNGLENLDTLLL 179
Query: 289 SFNNLTGQIPATLFNIDSLEYLFLGNNSL 317
N+L IP F L + FL N
Sbjct: 180 QENSLY-TIPKGFFGSHLLPFAFLHGNPW 207
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.0 bits (97), Expect = 2e-04
Identities = 32/147 (21%), Positives = 50/147 (34%), Gaps = 4/147 (2%)
Query: 255 SLKNLTDLSLRNALITGTIPFGIGELQMLQILDLSFNNLTGQIPATLFNIDSLEYLFLGN 314
+ + +++ +T +P + + IL LS N L ATL L L L
Sbjct: 8 KVASHLEVNCDKRNLT-ALPPDLPKD--TTILHLSENLLYTFSLATLMPYTRLTQLNLDR 64
Query: 315 NSLSGTLPDQKSENLQKIDLSHNHLSGTFPLWVNSELQMNLAVNNFKFDISNISVFPGLN 374
L+ D L +DLSHN L L L V+ + + GL
Sbjct: 65 AELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLG 124
Query: 375 CLQRNFTCNRNAPQCKLPSLCCLHPEM 401
+ N + P L P++
Sbjct: 125 E-LQELYLKGNELKTLPPGLLTPTPKL 150
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.0 bits (97), Expect = 2e-04
Identities = 33/185 (17%), Positives = 53/185 (28%), Gaps = 26/185 (14%)
Query: 176 EIPSTFAKLRNMQTLWASDNPFTGKIPDFIGNWTKLKSLRFQGNSFQ-GPIPSSLSKLAS 234
+P K + L S+N + +T+L L + +L L +
Sbjct: 24 ALPPDLPK--DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGT 81
Query: 235 LESLQMSDIYNVSSSLDFVMSLKNLTDLSLRNAL-------------------ITGTIPF 275
L+ + +L T+P
Sbjct: 82 LDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPP 141
Query: 276 GIGELQMLQIL-DLSFNNLTGQIPATLFNIDSLEYLFLGNNSLSGTLPDQ--KSENLQKI 332
G+ L+ NNLT L +++L+ L L NSL T+P S L
Sbjct: 142 GLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFA 200
Query: 333 DLSHN 337
L N
Sbjct: 201 FLHGN 205
|
| >d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]} Length = 273 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Focal adhesion kinase 1 (fak) species: Human (Homo sapiens) [TaxId: 9606]
Score = 54.8 bits (131), Expect = 1e-08
Identities = 24/128 (18%), Positives = 40/128 (31%), Gaps = 15/128 (11%)
Query: 657 DFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASS 716
DF S + + Y K ++APE T +DV+ FGV EI+
Sbjct: 151 DFGLSRYMEDSTYYKASKGKL-PIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKP 209
Query: 717 DKSLDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPP 776
+ + + EN + + ++ C P RP
Sbjct: 210 FQGVKNNDVI------GRIENGE-----RLPMPPNCPPTLYSLM---TKCWAYDPSRRPR 255
Query: 777 MSRVVAML 784
+ + A L
Sbjct: 256 FTELKAQL 263
|
| >d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 271 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Cell cycle checkpoint kinase chk1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 54.6 bits (131), Expect = 1e-08
Identities = 22/125 (17%), Positives = 39/125 (31%), Gaps = 14/125 (11%)
Query: 657 DFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHL-TEKADVFSFGVVALEIISGRAS 715
DF + + + Y+APE R E DV+S G+V +++G
Sbjct: 146 DFGLATVFRYNNRERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELP 205
Query: 716 SDKSLDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRP 775
D+ D + Y + E D L ++ +P R
Sbjct: 206 WDQPSDSCQEYS-----DWKEKKTYLNPWKKI-----DSAPLALL---HKILVENPSARI 252
Query: 776 PMSRV 780
+ +
Sbjct: 253 TIPDI 257
|
| >d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 54.7 bits (131), Expect = 2e-08
Identities = 18/73 (24%), Positives = 33/73 (45%), Gaps = 5/73 (6%)
Query: 642 KP-NIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVF 700
KP NI + DF S +L + + + Y++PE H + ++D++
Sbjct: 132 KPSNILVNSRGEIKLCDFGVSGQLIDS----MANSFVGTRSYMSPERLQGTHYSVQSDIW 187
Query: 701 SFGVVALEIISGR 713
S G+ +E+ GR
Sbjct: 188 SMGLSLVEMAVGR 200
|
| >d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]} Length = 269 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Serine/threonine-protein kinase Nek2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.5 bits (128), Expect = 3e-08
Identities = 23/141 (16%), Positives = 41/141 (29%), Gaps = 18/141 (12%)
Query: 642 KP-NIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVF 700
KP N+F + DF + L K + Y++PE R EK+D++
Sbjct: 141 KPANVFLDGKQNVKLGDFGLARILNHDTS--FAKAFVGTPYYMSPEQMNRMSYNEKSDIW 198
Query: 701 SFGVVALEIISGRASSDKSLDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVI 760
S G + E+ + E + + E +I
Sbjct: 199 SLGCLLYELCALMPPFTAFSQKELAGKIREGK------------FRRIPYRYSDELNEII 246
Query: 761 GVALLCTQTSPMMRPPMSRVV 781
RP + ++
Sbjct: 247 ---TRMLNLKDYHRPSVEEIL 264
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 54.1 bits (128), Expect = 4e-08
Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 9/77 (11%)
Query: 280 LQMLQILDLSFNNLTGQIPATLFNIDSLEYLFLGNNSLSGTLPDQKSENLQKIDLSHNHL 339
L+ L++S N L ++PA LE L N L+ +P+ +NL+++ + +N L
Sbjct: 283 PPSLEELNVSNNKLI-ELPALPPR---LERLIASFNHLA-EVPEL-PQNLKQLHVEYNPL 336
Query: 340 SGTFPLWVNS--ELQMN 354
FP S +L+MN
Sbjct: 337 R-EFPDIPESVEDLRMN 352
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 46.7 bits (109), Expect = 7e-06
Identities = 19/82 (23%), Positives = 37/82 (45%), Gaps = 10/82 (12%)
Query: 254 MSLKNLTDLSLRNALITGTIPFGIGELQMLQILDLSFNNLTGQIPATLFNIDSLEYLFLG 313
+L +L++ N + +P L+ L SFN+L ++P N L+ L +
Sbjct: 281 DLPPSLEELNVSNNKLI-ELPALPPRLE---RLIASFNHLA-EVPELPQN---LKQLHVE 332
Query: 314 NNSLSGTLPDQKSENLQKIDLS 335
N L PD E+++ + ++
Sbjct: 333 YNPLR-EFPDIP-ESVEDLRMN 352
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 39.8 bits (91), Expect = 0.001
Identities = 19/74 (25%), Positives = 32/74 (43%), Gaps = 3/74 (4%)
Query: 288 LSFNNLTGQIPATLFNIDSLEYLFLGNNSLSGTLPDQKSENLQKIDLSHNHLSGTFPLWV 347
N + +I + SLE L + NN L LP L+++ S NHL+ P
Sbjct: 267 YYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPP-RLERLIASFNHLA-EVPELP 323
Query: 348 NSELQMNLAVNNFK 361
+ Q+++ N +
Sbjct: 324 QNLKQLHVEYNPLR 337
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 37.9 bits (86), Expect = 0.004
Identities = 17/91 (18%), Positives = 33/91 (36%), Gaps = 9/91 (9%)
Query: 98 QNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKELTVLAFGTNNFSGALPPEL 157
N + + S L L+ S+N +P L+ L + N +P
Sbjct: 269 LNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPALPPRLERLIA----SFNHLAEVPELP 323
Query: 158 GNLAKLEQLYIDSCGAGGEIPSTFAKLRNMQ 188
N L+QL+++ E P + +++
Sbjct: 324 QN---LKQLHVEYNPL-REFPDIPESVEDLR 350
|
| >d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 263 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Aurora-related kinase 1 (aurora-2) species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.9 bits (124), Expect = 9e-08
Identities = 22/103 (21%), Positives = 39/103 (37%), Gaps = 16/103 (15%)
Query: 679 SYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSLDMEKIYLLEWAWNLHENN 738
+ YL PE EK D++S GV+ E + G+ + + E +
Sbjct: 167 TLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYKRISR-------- 218
Query: 739 QSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVV 781
V+ T +F + A +I + +P RP + V+
Sbjct: 219 -----VEFTFPDFVTEGARDLI---SRLLKHNPSQRPMLREVL 253
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Score = 49.3 bits (116), Expect = 3e-07
Identities = 25/201 (12%), Positives = 57/201 (28%), Gaps = 18/201 (8%)
Query: 111 NLSRLMFLSFSHNDFSGPVPR-ELGNLKELTVLAFGTNNFSGALPPELGNLAKLEQLYID 169
L+ M + + V + +L + L G + G + L L Q+
Sbjct: 16 ALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDG-----VEYLNNLTQINFS 70
Query: 170 SCGAGGEIPSTFAKLRNMQTLWASDNPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSL 229
+ P + + + + + ++L
Sbjct: 71 NNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNL 130
Query: 230 SKLASLESLQMSDIYNVSSSLDFVMSLKNLTDLSLRNALITGTIPFGIGELQMLQILDLS 289
++L + + ++ + +T P L L+ LD+S
Sbjct: 131 NRLELSSNTISDISALSGLTSLQQLNFSSNQ--------VTDLKPLA--NLTTLERLDIS 180
Query: 290 FNNLTGQIPATLFNIDSLEYL 310
N ++ + L + +LE L
Sbjct: 181 SNKVSD--ISVLAKLTNLESL 199
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Score = 37.3 bits (85), Expect = 0.004
Identities = 40/198 (20%), Positives = 68/198 (34%), Gaps = 14/198 (7%)
Query: 135 NLKELTVLAFGTNNFSGALPPELGNLAKLEQLYIDSCGAGGEIPSTFAKLRNMQTLWASD 194
L E G N + +L ++ L D G + L N+ + S+
Sbjct: 16 ALAEKMKTVLGKTNVTD--TVSQTDLDQVTTLQADRLGI--KSIDGVEYLNNLTQINFSN 71
Query: 195 NPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLESLQMSDIYNVSSSLDFVM 254
N T + N TKL + N P + + ++ N + +D +
Sbjct: 72 NQLTD--ITPLKNLTKLVDILMNNNQIADITPLANLTNLT----GLTLFNNQITDIDPLK 125
Query: 255 SLKNLTDLSLRNALITGTIPFGIGELQMLQILDLSFNNLTGQIPATLFNIDSLEYLFLGN 314
+L NL L L + I+ N +T P L N+ +LE L + +
Sbjct: 126 NLTNLNRLELSSNTISDISALSGLTSLQQLNFS--SNQVTDLKP--LANLTTLERLDISS 181
Query: 315 NSLSGTLPDQKSENLQKI 332
N +S K NL+ +
Sbjct: 182 NKVSDISVLAKLTNLESL 199
|
| >d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 293 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Casein kinase-1, CK1 species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Score = 50.2 bits (119), Expect = 4e-07
Identities = 18/139 (12%), Positives = 37/139 (26%), Gaps = 15/139 (10%)
Query: 646 FGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVV 705
FG F R + K + + Y++ + + + D+ + G V
Sbjct: 150 FGMV-------KFYRDPVTKQHIPYREKKNLSGTARYMSINTHLGREQSRRDDLEALGHV 202
Query: 706 ALEIISGRASSDKSLDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALL 765
+ + G E + E QS L L +E + +
Sbjct: 203 FMYFLRGSLPWQGLKAATNKQKYER---IGEKKQSTPL--RELCAGFPEEFYKYM---HY 254
Query: 766 CTQTSPMMRPPMSRVVAML 784
+ P + +
Sbjct: 255 ARNLAFDATPDYDYLQGLF 273
|
| >d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: pak1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.0 bits (119), Expect = 5e-07
Identities = 21/137 (15%), Positives = 39/137 (28%), Gaps = 15/137 (10%)
Query: 644 NIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFG 703
NI + DF ++ + ++APE R K D++S G
Sbjct: 146 NILLGMDGSVKLTDFGFCAQITPEQS--KRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLG 203
Query: 704 VVALEIISGRASSDKSLDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVA 763
++A+E+I G + +Y + G + E +
Sbjct: 204 IMAIEMIEGEPPYLNENPLRALY----------LIATNGTPELQNPEKLSAIFRDFL--- 250
Query: 764 LLCTQTSPMMRPPMSRV 780
C R +
Sbjct: 251 NRCLDMDVEKRGSAKEL 267
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Score = 48.9 bits (115), Expect = 6e-07
Identities = 35/204 (17%), Positives = 70/204 (34%), Gaps = 16/204 (7%)
Query: 111 NLSRLMFLSFSHNDFSGPVPRELGNLKELTVLAFGTNNFSGALPPELGNLAKLEQLYIDS 170
+ + + + V + L + + ++ + L + +L+++
Sbjct: 22 AFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNG 77
Query: 171 CGAGGEIPSTFAKLRNMQTLWASDNPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLS 230
P A L+N+ L+ +N K SL G S +
Sbjct: 78 NKLTDIKP--LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQ 135
Query: 231 KLASLESLQMSDIYNVSSSLDFVMSLKNLTDLSLRNALITGTIPFGIGELQMLQILDLSF 290
+ N + + + L L LSL + I+ +P L LQ L LS
Sbjct: 136 LE------SLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLA--GLTKLQNLYLSK 187
Query: 291 NNLTGQIPATLFNIDSLEYLFLGN 314
N+++ + A L + +L+ L L +
Sbjct: 188 NHISD-LRA-LAGLKNLDVLELFS 209
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Score = 45.0 bits (105), Expect = 1e-05
Identities = 18/89 (20%), Positives = 36/89 (40%), Gaps = 10/89 (11%)
Query: 264 LRNALITGTIPFGIGE------LQMLQILDLSFNNLTGQIPATLFNIDSLEYLFLGNNSL 317
L + IT +P I + +L ++T + T ++S++ + N+ +
Sbjct: 3 LGSETIT--VPTPIKQIFSDDAFAETIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDI 58
Query: 318 SGTLPDQKSENLQKIDLSHNHLSGTFPLW 346
Q N+ K+ L+ N L+ PL
Sbjct: 59 KSVQGIQYLPNVTKLFLNGNKLTDIKPLA 87
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Score = 39.2 bits (90), Expect = 0.001
Identities = 33/201 (16%), Positives = 61/201 (30%), Gaps = 14/201 (6%)
Query: 135 NLKELTVLAFGTNNFSGALPPELGNLAKLEQLYIDSCGAGGEIPSTFAKLRNMQTLWASD 194
E + + A+ L ++Q+ ++ L N+ L+ +
Sbjct: 22 AFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNG 77
Query: 195 NPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLESLQMSDIYNVSSSLDFVM 254
N T LK+L + S K + +S V
Sbjct: 78 NKLTDIK-----PLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVH 132
Query: 255 SLKNLTDLSLRNALITGTIPFGIGELQMLQILDLSFNNLTGQIPATLFNIDSLEYLFLGN 314
+ + N T + L L L L N ++ +P L + L+ L+L
Sbjct: 133 LPQLESLYLGNN---KITDITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSK 187
Query: 315 NSLSGTLPDQKSENLQKIDLS 335
N +S +NL ++L
Sbjct: 188 NHISDLRALAGLKNLDVLELF 208
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Score = 48.9 bits (115), Expect = 6e-07
Identities = 35/219 (15%), Positives = 61/219 (27%), Gaps = 24/219 (10%)
Query: 111 NLSRLMFLSFSHNDFSGPVP-RELGNLKELTVLAFGTNNFSGALPPELGNLAKLEQLYID 169
L+ + ++ ++ + V +L + L+ G G + L L L +
Sbjct: 17 ALANAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIEG-----VQYLNNLIGLELK 71
Query: 170 SCGAGGEIPSTFAKLRNMQTLWASDNPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSL 229
P L + I T + + S+L
Sbjct: 72 DNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNL 131
Query: 230 SKL--------------ASLESLQMSDIYNVSSSLDFVMSLKNLTDLSLRNALITGTIPF 275
L +S S L + +L LT L + I+ P
Sbjct: 132 QVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISPL 191
Query: 276 GIGELQMLQILDLSFNNLTGQIPATLFNIDSLEYLFLGN 314
L L + L N ++ P L N +L + L N
Sbjct: 192 A--SLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTN 226
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Score = 48.9 bits (115), Expect = 6e-07
Identities = 42/232 (18%), Positives = 67/232 (28%), Gaps = 22/232 (9%)
Query: 135 NLKELTVLAFGTNNFSGALPPELGNLAKLEQLYIDSCGAGGEIPSTFAKLRNMQTLWASD 194
L +A G +N + + +L + L G I L N+ L D
Sbjct: 17 ALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVT-TIEG-VQYLNNLIGLELKD 72
Query: 195 NPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLESLQMSDIYNVSSSLDFVM 254
N K + + P+ + + + + + +
Sbjct: 73 NQI------TDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLA 126
Query: 255 SLKNLTDLSLRNALITGTIPFGIGELQMLQILDLSFNNLTGQIPATLFNIDSLEYLFLGN 314
L NL L L IT P S N L N+ L L +
Sbjct: 127 GLSNLQVLYLDLNQITNISPLAGLTNLQYL----SIGNAQVSDLTPLANLSKLTTLKADD 182
Query: 315 NSLSGTLPDQKSENLQKIDLSHNHLSGTFPLWVNSELQMNLAVNNFKFDISN 366
N +S P NL ++ L +N +S PL S L ++N
Sbjct: 183 NKISDISPLASLPNLIEVHLKNNQISDVSPLANTSNLF--------IVTLTN 226
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Score = 41.9 bits (97), Expect = 1e-04
Identities = 35/218 (16%), Positives = 66/218 (30%), Gaps = 26/218 (11%)
Query: 88 LQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKELTVLAFGTN 147
L + ++ T + +L + LS + + L L L N
Sbjct: 18 LANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDN 73
Query: 148 NFSGALPPELGNLAKLEQLYIDSCGAGGEIPSTFAKLRNMQTLWASD------------- 194
+ L NL K+ +L + + L ++
Sbjct: 74 QITD--LAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNL 131
Query: 195 ---NPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLESLQMSDIYNVSSSLD 251
+I + + Q + L+ L+ L +L+ D N S +
Sbjct: 132 QVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADD--NKISDIS 189
Query: 252 FVMSLKNLTDLSLRNALITGTIPFGIGELQMLQILDLS 289
+ SL NL ++ L+N I+ P L I+ L+
Sbjct: 190 PLASLPNLIEVHLKNNQISDVSPL--ANTSNLFIVTLT 225
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 46.6 bits (110), Expect = 7e-07
Identities = 22/127 (17%), Positives = 40/127 (31%), Gaps = 7/127 (5%)
Query: 188 QTLWASDNPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLESLQMSDIYNVS 247
+ L + T + + + L N + P+ L+ L LE LQ SD +
Sbjct: 1 RVLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPPA-LAALRCLEVLQASDNALEN 57
Query: 248 SSLDFVMSLKNLTDLSLRNALITGTIPFGIGELQMLQILDLSFNNLTGQ---IPATLFNI 304
+ L N L + L +L+L N+L + +
Sbjct: 58 VDGVANLPRLQELLLC-NNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEML 116
Query: 305 DSLEYLF 311
S+ +
Sbjct: 117 PSVSSIL 123
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 41.2 bits (96), Expect = 6e-05
Identities = 21/120 (17%), Positives = 34/120 (28%), Gaps = 7/120 (5%)
Query: 93 VLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKELTVLAFGTNNFSGA 152
VL + T + L + L SHN P L L+ L VL N
Sbjct: 2 VLHLAHKDLTVL--CHLEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALEN- 57
Query: 153 LPPELGNLAKLEQLYIDSCG-AGGEIPSTFAKLRNMQTLWASDNPFTGKIPDFIGNWTKL 211
+ NL +L++L + + + L N ++
Sbjct: 58 -VDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ-EEGIQERLAEM 115
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 38.9 bits (90), Expect = 4e-04
Identities = 23/109 (21%), Positives = 36/109 (33%), Gaps = 6/109 (5%)
Query: 212 KSLRFQGNSFQGPIPSSLSKLASLESLQMSDIYNVSSSLDFVMSLKNLTDLSLRNALITG 271
+ L + L +L + L +S + + + +L+ L L +
Sbjct: 1 RVLHLAHKDLT--VLCHLEQLLLVTHLDLSH-NRLRALPPALAALRCLEVLQASD--NAL 55
Query: 272 TIPFGIGELQMLQILDLSFNNLTG-QIPATLFNIDSLEYLFLGNNSLSG 319
G+ L LQ L L N L L + L L L NSL
Sbjct: 56 ENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 38.9 bits (90), Expect = 4e-04
Identities = 21/101 (20%), Positives = 40/101 (39%), Gaps = 6/101 (5%)
Query: 244 YNVSSSLDFVMSLKNLTDLSLRNALITGTIPFGIGELQMLQILDLSFNNLTGQIPATLFN 303
+ + L + L +T L L + + P + L+ L++L ++ + + N
Sbjct: 7 HKDLTVLCHLEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQ--ASDNALENVDGVAN 63
Query: 304 IDSLEYLFLGNNSLSGTLPDQ---KSENLQKIDLSHNHLSG 341
+ L+ L L NN L + Q L ++L N L
Sbjct: 64 LPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 38.9 bits (90), Expect = 4e-04
Identities = 21/95 (22%), Positives = 34/95 (35%), Gaps = 3/95 (3%)
Query: 284 QILDLSFNNLTGQIPATLFNIDSLEYLFLGNNSLSGTLPD-QKSENLQKIDLSHNHLSGT 342
++L L+ +LT + L + + +L L +N L P L+ + S N L
Sbjct: 1 RVLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENV 58
Query: 343 FPLWVNSELQMNLAVNNFKFDISNISVFPGLNCLQ 377
+ LQ L NN + I L
Sbjct: 59 DGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLV 93
|
| >d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: 3-phosphoinositide dependent protein kinase-1 Pdk1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.9 bits (116), Expect = 1e-06
Identities = 13/73 (17%), Positives = 29/73 (39%), Gaps = 1/73 (1%)
Query: 642 KP-NIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVF 700
KP NI ++ DF + L + Y++PE + +D++
Sbjct: 135 KPENILLNEDMHIQITDFGTAKVLSPESKQARANSFVGTAQYVSPELLTEKSACKSSDLW 194
Query: 701 SFGVVALEIISGR 713
+ G + ++++G
Sbjct: 195 ALGCIIYQLVAGL 207
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.3 bits (110), Expect = 5e-06
Identities = 16/86 (18%), Positives = 33/86 (38%), Gaps = 13/86 (15%)
Query: 281 QMLQILDLSFNNLTGQ----IPATLFNIDSLEYLFLGNNSLSG--------TLPDQKSEN 328
+L++L L+ +++ + ATL SL L L NN L ++
Sbjct: 369 SVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGC-L 427
Query: 329 LQKIDLSHNHLSGTFPLWVNSELQMN 354
L+++ L + S + + +
Sbjct: 428 LEQLVLYDIYWSEEMEDRLQALEKDK 453
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.9 bits (109), Expect = 8e-06
Identities = 20/93 (21%), Positives = 32/93 (34%), Gaps = 13/93 (13%)
Query: 257 KNLTDLSLRNALITGT----IPFGIGELQMLQILDLSFNNLTGQIPATLF-----NIDSL 307
L L L + ++ + + + L+ LDLS N L L L
Sbjct: 369 SVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLL 428
Query: 308 EYLFLGNNSLSGTLPDQKSENLQKIDLSHNHLS 340
E L L + S + D+ LQ ++ L
Sbjct: 429 EQLVLYDIYWSEEMEDR----LQALEKDKPSLR 457
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.5 bits (95), Expect = 4e-04
Identities = 11/83 (13%), Positives = 24/83 (28%), Gaps = 9/83 (10%)
Query: 159 NLAKLEQLYIDSCGAGGE----IPSTFAKLRNMQTLWASDNPFTGKIPDFIG-----NWT 209
+ L L++ C + +T +++ L S+N +
Sbjct: 367 PGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGC 426
Query: 210 KLKSLRFQGNSFQGPIPSSLSKL 232
L+ L + + L L
Sbjct: 427 LLEQLVLYDIYWSEEMEDRLQAL 449
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.7 bits (93), Expect = 6e-04
Identities = 22/174 (12%), Positives = 49/174 (28%), Gaps = 24/174 (13%)
Query: 234 SLESLQMSDIYNVSSS--LDFVMSLKNLTDLSLRNALITG----TIPFGIGELQMLQILD 287
++SL + +S + + + L+ + L + +T I + L L+
Sbjct: 3 DIQSLDIQC-EELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 61
Query: 288 LSFNNLTGQIPATLFNIDSLEYLFLGNNSLSGTLPDQKSENLQKIDLSHNHLSGTFPLWV 347
L N L + L S +QK+ L + L+G +
Sbjct: 62 LRSNELGDVGVHCVLQ-------GLQTPSC----------KIQKLSLQNCCLTGAGCGVL 104
Query: 348 NSELQMNLAVNNFKFDISNISVFPGLNCLQRNFTCNRNAPQCKLPSLCCLHPEM 401
+S L+ + + + + + +L
Sbjct: 105 SSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASC 158
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.2 bits (89), Expect = 0.002
Identities = 19/139 (13%), Positives = 35/139 (25%), Gaps = 31/139 (22%)
Query: 185 RNMQTLWASDNPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLESLQMSDIY 244
+ D + L+ L SSL+
Sbjct: 345 LQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAAT------------ 392
Query: 245 NVSSSLDFVMSLKNLTDLSLRNALITGTIPFGIGELQM-----LQILDLSFNNLTGQIPA 299
+++ +L +L L N + + E L+ L L + ++
Sbjct: 393 --------LLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEME- 443
Query: 300 TLFNIDSLEYLFLGNNSLS 318
D L+ L SL
Sbjct: 444 -----DRLQALEKDKPSLR 457
|
| >d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 277 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Mycobacterial protein kinase PknB, catalytic domain species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 46.3 bits (109), Expect = 7e-06
Identities = 19/104 (18%), Positives = 38/104 (36%), Gaps = 12/104 (11%)
Query: 679 SYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSLDMEKIYLLEWAWNLHENN 738
+ YL+PE A + ++DV+S G V E+++G + Y ++ E+
Sbjct: 177 TAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGDSPVSVAYQ-----HVREDP 231
Query: 739 QSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVA 782
L+ + V+ L +P R + +
Sbjct: 232 IPPSARHEGLSA----DLDAVV---LKALAKNPENRYQTAAEMR 268
|
| >d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]} Length = 350 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Twitchin, kinase domain species: Caenorhabditis elegans, pjk4 [TaxId: 6239]
Score = 46.2 bits (109), Expect = 1e-05
Identities = 32/191 (16%), Positives = 66/191 (34%), Gaps = 23/191 (12%)
Query: 657 DFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASS 716
DF + L KVT + + APE A + D++S GV++ ++SG +
Sbjct: 169 DFGLTAHLDPKQS---VKVTTGTAEFAAPEVAEGKPVGYYTDMWSVGVLSYILLSGLSPF 225
Query: 717 DKSLDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPP 776
D E + ++ + + + ++ +F + +F K P R
Sbjct: 226 GGENDDETLRNVK-SCDWNMDDSAFSGISEDGKDFIRK-----------LLLADPNTRMT 273
Query: 777 MSRVVAMLAGDIEVGTVVSKPSYLTGWDFKDI------TASFLNEDTPTPSSSNKRSNSK 830
+ + + + G + S + + I E P + S+ +
Sbjct: 274 IHQALEHPW--LTPGNAPGRDSQIPSSRYTKIRDSIKTKYDAWPEPLPPLGRISNYSSLR 331
Query: 831 KKSQRENPVDD 841
K +E + D
Sbjct: 332 KHRPQEYSIRD 342
|
| >d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Cyclin-dependent PK, CDK6 species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.0 bits (108), Expect = 1e-05
Identities = 26/151 (17%), Positives = 49/151 (32%), Gaps = 15/151 (9%)
Query: 642 KP-NIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVF 700
KP NI + + DF + VT Y APE ++ D++
Sbjct: 143 KPQNILVTSSGQIKLADFGLARIYSFQMALTSVVVT---LWYRAPEVLLQSSYATPVDLW 199
Query: 701 SFGVVALEIISGRASSDKSLDMEKIYLL----------EWAWNLHENNQSFGLVDPT-LT 749
S G + E+ + S D++++ + +W ++ Q+F +
Sbjct: 200 SVGCIFAEMFRRKPLFRGSSDVDQLGKILDVIGLPGEEDWPRDVALPRQAFHSKSAQPIE 259
Query: 750 EFNDKEALRVIGVALLCTQTSPMMRPPMSRV 780
+F + L C +P R
Sbjct: 260 KFVTDIDELGKDLLLKCLTFNPAKRISAYSA 290
|
| >d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]} Length = 352 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Twitchin, kinase domain species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]
Score = 46.2 bits (109), Expect = 1e-05
Identities = 35/193 (18%), Positives = 62/193 (32%), Gaps = 18/193 (9%)
Query: 657 DFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASS 716
DF + KL V T + APE R + D+++ GV+ ++SG +
Sbjct: 172 DFGLATKLNPDEIVKVTTAT---AEFAAPEIVDREPVGFYTDMWAIGVLGYVLLSGLSPF 228
Query: 717 DKSLDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPP 776
D+E + ++ + + +F V P +F Q P R
Sbjct: 229 AGEDDLETLQNVK-RCDWEFDEDAFSSVSPEAKDFIKN-----------LLQKEPRKRLT 276
Query: 777 MSRVVAM--LAGDIEVGTVVSKPSYLTGWDFKDITASFLNEDTPTPSSSNKRSNSKKKSQ 834
+ + L GD T S + I + + P P+ + S +
Sbjct: 277 VHDALEHPWLKGDHSNLTSRIPSSRYNKIR-QKIKEKYADWPAPQPAIGRIANFSSLRKH 335
Query: 835 RENPVDDHSEGID 847
R + D
Sbjct: 336 RPQEYQIYDSYFD 348
|
| >d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Death-associated protein kinase, Dap species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.4 bits (104), Expect = 3e-05
Identities = 24/137 (17%), Positives = 44/137 (32%), Gaps = 15/137 (10%)
Query: 644 NIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFG 703
+ R DF ++K+ G T ++APE L +AD++S G
Sbjct: 147 LDRNVPKPRIKIIDFGLAHKIDFGNEFKNIFGT---PEFVAPEIVNYEPLGLEADMWSIG 203
Query: 704 VVALEIISGRASSDKSLDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVA 763
V+ ++SG + E + + A N ++ F +F +
Sbjct: 204 VITYILLSGASPFLGDTKQETLANVS-AVNYEFEDEYFSNTSALAKDFIRR--------- 253
Query: 764 LLCTQTSPMMRPPMSRV 780
P R +
Sbjct: 254 --LLVKDPKKRMTIQDS 268
|
| >d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 309 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Serine/threonine protein kinase TAO2 species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 43.8 bits (103), Expect = 5e-05
Identities = 21/106 (19%), Positives = 36/106 (33%), Gaps = 17/106 (16%)
Query: 679 SYGYLAPEYAM---RGHLTEKADVFSFGVVALEIISGRASSDKSLDMEKIYLLEWAWNLH 735
+ ++APE + G K DV+S G+ +E+ + M +Y
Sbjct: 174 TPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNAMSALY-------HI 226
Query: 736 ENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVV 781
N+S L +E + C Q P RP ++
Sbjct: 227 AQNESPALQSGHWSE----YFRNFV---DSCLQKIPQDRPTSEVLL 265
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.2 bits (98), Expect = 5e-05
Identities = 11/110 (10%), Positives = 31/110 (28%), Gaps = 1/110 (0%)
Query: 283 LQILDLSFNNLTGQIPATLFNIDSLEYLFLGNNSLSGTLPDQKSENLQKIDLSHNHLSGT 342
+ LDL + I +D + + +N + L+ + +++N +
Sbjct: 20 DRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRI 78
Query: 343 FPLWVNSELQMNLAVNNFKFDISNISVFPGLNCLQRNFTCNRNAPQCKLP 392
+ + + + + P + + C P
Sbjct: 79 GEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKK 128
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Score = 41.3 bits (95), Expect = 2e-04
Identities = 35/167 (20%), Positives = 56/167 (33%), Gaps = 7/167 (4%)
Query: 129 VPRELGNLKELTVLAFGTNNFSGALPPEL-GNLAKLEQLYIDSCGAGGEIPSTFAKLRNM 187
+PR++ T L N L G L L +L + G P+ F ++
Sbjct: 23 IPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHI 80
Query: 188 QTLWASDNPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLESLQMSDIYNVS 247
Q L +N +LK+L N +P S L SL SL ++
Sbjct: 81 QELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC 140
Query: 248 SSLDFVMSLKNLTDLSLRNALITGTIPFGIGELQMLQILDLSFNNLT 294
+ + L SL P +++ +QI DL +
Sbjct: 141 NC-HLAWFAEWLRKKSLNGGAARCGAP---SKVRDVQIKDLPHSEFK 183
|
| >d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]} Length = 320 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Protein kinase C, theta type species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.0 bits (98), Expect = 2e-04
Identities = 16/70 (22%), Positives = 26/70 (37%), Gaps = 2/70 (2%)
Query: 644 NIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFG 703
NI + DF + G + Y+APE + D +SFG
Sbjct: 133 NILLDKDGHIKIADFGMCKENMLGD--AKTNTFCGTPDYIAPEILLGQKYNHSVDWWSFG 190
Query: 704 VVALEIISGR 713
V+ E++ G+
Sbjct: 191 VLLYEMLIGQ 200
|
| >d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 316 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: cAMP-dependent PK, catalytic subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 41.2 bits (96), Expect = 3e-04
Identities = 17/73 (23%), Positives = 28/73 (38%), Gaps = 6/73 (8%)
Query: 642 KP-NIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVF 700
KP NI DF + + + Y Y+APE + D +
Sbjct: 131 KPENILLDKNGHIKITDFGFAKYVPDVTYTLCGTP-----DYIAPEVVSTKPYNKSIDWW 185
Query: 701 SFGVVALEIISGR 713
SFG++ E+++G
Sbjct: 186 SFGILIYEMLAGY 198
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.4 bits (91), Expect = 4e-04
Identities = 22/138 (15%), Positives = 42/138 (30%), Gaps = 5/138 (3%)
Query: 176 EIPSTFAKLRNMQTLWASDNPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASL 235
++ +K + PD + L + +S + + L
Sbjct: 11 QLKLIMSKRYDGSQQALDLKGLR-SDPDLVAQ-NIDVVL-NRRSSMAATLRIIEENIPEL 67
Query: 236 ESLQMS--DIYNVSSSLDFVMSLKNLTDLSLRNALITGTIPFGIGELQMLQILDLSFNNL 293
SL +S +Y + V NL L+L + + L+ L L N+L
Sbjct: 68 LSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSL 127
Query: 294 TGQIPATLFNIDSLEYLF 311
+ I ++ F
Sbjct: 128 SDTFRDQSTYISAIRERF 145
|
| >d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]} Length = 288 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: STE20-like serine/threonine-protein kinase, SLK species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.4 bits (94), Expect = 6e-04
Identities = 21/129 (16%), Positives = 37/129 (28%), Gaps = 20/129 (15%)
Query: 657 DFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAM-----RGHLTEKADVFSFGVVALEIIS 711
DF S K + ++APE M KADV+S G+ +E+
Sbjct: 153 DFGVSAKNTRTIQ--RRDSFIGTPYWMAPEVVMCETSKDRPYDYKADVWSLGITLIEMAE 210
Query: 712 GRASSDKSLDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSP 771
+ M + ++ L P + C + +
Sbjct: 211 IEPPHHELNPMRVLL-------KIAKSEPPTLAQP---SRWSSNFKDFL---KKCLEKNV 257
Query: 772 MMRPPMSRV 780
R S++
Sbjct: 258 DARWTTSQL 266
|
| >d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]} Length = 321 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Titin, kinase domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.4 bits (94), Expect = 6e-04
Identities = 12/57 (21%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Query: 657 DFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGR 713
+F ++ +L G +++ + Y APE ++ D++S G + ++SG
Sbjct: 147 EFGQARQLK---PGDNFRLLFTAPEYYAPEVHQHDVVSTATDMWSLGTLVYVLLSGI 200
|
| >d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]} Length = 335 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: MAP kinase activated protein kinase 2, mapkap2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.5 bits (94), Expect = 6e-04
Identities = 19/124 (15%), Positives = 39/124 (31%), Gaps = 11/124 (8%)
Query: 657 DFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASS 716
DF + + T Y+APE + D++S GV+ ++ G
Sbjct: 157 DFGFAKETTSHNSLTTPCYT---PYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPF 213
Query: 717 DKSLDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPP 776
+ + + + +P +E +E +I +T P R
Sbjct: 214 YSNHGLA----ISPGMKTRIRMGQYEFPNPEWSEV-SEEVKMLI---RNLLKTEPTQRMT 265
Query: 777 MSRV 780
++
Sbjct: 266 ITEF 269
|
| >d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 307 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Calmodulin-dependent protein kinase species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 40.4 bits (94), Expect = 6e-04
Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 3/57 (5%)
Query: 657 DFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGR 713
DF S G V + GY+APE + ++ D +S GV+A ++ G
Sbjct: 153 DFGLSKMEDPGS---VLSTACGTPGYVAPEVLAQKPYSKAVDCWSIGVIAYILLCGY 206
|
| >d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]} Length = 298 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Cyclin-dependent PK, CDK2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.1 bits (90), Expect = 0.002
Identities = 18/114 (15%), Positives = 40/114 (35%), Gaps = 14/114 (12%)
Query: 681 GYLAPE-YAMRGHLTEKADVFSFGVVALEIISGRASSDKSLDMEKIYLL--------EWA 731
Y APE + + D++S G + E+++ RA ++++++ + E
Sbjct: 167 WYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPDEVV 226
Query: 732 WNLHENNQSFGLVDPTLTEFNDKEALRVI---GVALL--CTQTSPMMRPPMSRV 780
W + + P + + + + G +LL P R
Sbjct: 227 WPGVTSMPDYKPSFPKWARQDFSKVVPPLDEDGRSLLSQMLHYDPNKRISAKAA 280
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.0 bits (86), Expect = 0.003
Identities = 11/53 (20%), Positives = 16/53 (30%), Gaps = 4/53 (7%)
Query: 271 GTIPFGI-GELQMLQILDLSFNNLTGQIPATLFNIDSLEYLFLGNNSLSGTLP 322
+P + ILD+S + L N+ L N LP
Sbjct: 190 EELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK---KLP 239
|
| >d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]} Length = 299 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Cell division protein kinase 7, CDK7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.3 bits (88), Expect = 0.003
Identities = 14/74 (18%), Positives = 26/74 (35%), Gaps = 4/74 (5%)
Query: 642 KP-NIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHL-TEKADV 699
KP N+ DF + G ++V + Y APE + D+
Sbjct: 127 KPNNLLLDENGVLKLADFGLAKSFGSPNRAYTHQVV--TRWYRAPELLFGARMYGVGVDM 184
Query: 700 FSFGVVALEIISGR 713
++ G + E++
Sbjct: 185 WAVGCILAELLLRV 198
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Score = 37.9 bits (86), Expect = 0.004
Identities = 11/67 (16%), Positives = 27/67 (40%), Gaps = 10/67 (14%)
Query: 283 LQILDLSFNNLTGQ----IPATLFNIDSLEYLFLGNNSLSG----TLPD--QKSENLQKI 332
++ L + +T + + A L DS++ + L N++ L + ++L+
Sbjct: 5 IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 64
Query: 333 DLSHNHL 339
+ S
Sbjct: 65 EFSDIFT 71
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 866 | |||
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 100.0 | |
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 99.96 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 99.92 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 99.91 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 99.91 | |
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 99.91 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 99.9 | |
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 99.89 | |
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 99.86 | |
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 99.85 | |
| d1uwha_ | 276 | B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]} | 99.77 | |
| d1mqba_ | 283 | epha2 receptor tyrosine kinase {Human (Homo sapien | 99.73 | |
| d1jpaa_ | 299 | ephb2 receptor tyrosine kinase {Mouse (Mus musculu | 99.72 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 99.72 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 99.72 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 99.71 | |
| d1lufa_ | 301 | Musk tyrosine kinase {Rat (Rattus norvegicus) [Tax | 99.71 | |
| d1sm2a_ | 263 | Tyrosine-protein kinase Itk/Tsk {Human (Homo sapie | 99.7 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 99.7 | |
| d1rjba_ | 325 | Fl cytokine receptor {Human (Homo sapiens) [TaxId: | 99.7 | |
| d1fmka3 | 285 | c-src tyrosine kinase {Human (Homo sapiens) [TaxId | 99.69 | |
| d1qpca_ | 272 | Lymphocyte kinase (lck) {Human (Homo sapiens) [Tax | 99.69 | |
| d1u59a_ | 285 | Tyrosine-protein kinase ZAP-70 {Human (Homo sapien | 99.69 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 99.69 | |
| d1xkka_ | 317 | EGF receptor tyrosine kinase, Erbb-1 {Human (Homo | 99.68 | |
| d1opja_ | 287 | Abelsone tyrosine kinase (abl) {Mouse (Mus musculu | 99.68 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 99.68 | |
| d1xbba_ | 277 | Tyrosine-protein kinase SYK {Human (Homo sapiens) | 99.67 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.67 | |
| d1ywna1 | 299 | Vascular endothelial growth factor receptor 2 (kdr | 99.66 | |
| d1vjya_ | 303 | Type I TGF-beta receptor R4 {Human (Homo sapiens) | 99.66 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.66 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.66 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 99.65 | |
| d1k2pa_ | 258 | Bruton's tyrosine kinase (Btk) {Human (Homo sapien | 99.65 | |
| d1p4oa_ | 308 | Insulin-like growth factor 1 receptor {Human (Homo | 99.65 | |
| d2java1 | 269 | Serine/threonine-protein kinase Nek2 {Human (Homo | 99.64 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 99.64 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.64 | |
| d1r0pa_ | 311 | Hepatocyte growth factor receptor, c-MET {Human (H | 99.63 | |
| d1fgka_ | 299 | Fibroblast growth factor receptor 1 {Human (Homo s | 99.63 | |
| d1u46a_ | 273 | Activated CDC42 kinase 1, ACK1 {Human (Homo sapien | 99.62 | |
| d1mp8a_ | 273 | Focal adhesion kinase 1 (fak) {Human (Homo sapiens | 99.62 | |
| d2j4za1 | 263 | Aurora-related kinase 1 (aurora-2) {Human (Homo sa | 99.61 | |
| d1byga_ | 262 | Carboxyl-terminal src kinase (csk) {Human (Homo sa | 99.61 | |
| d1nvra_ | 271 | Cell cycle checkpoint kinase chk1 {Human (Homo sap | 99.61 | |
| d1t46a_ | 311 | c-KIT receptor {Human (Homo sapiens) [TaxId: 9606] | 99.6 | |
| d1uu3a_ | 288 | 3-phosphoinositide dependent protein kinase-1 Pdk1 | 99.59 | |
| d1fvra_ | 309 | Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]} | 99.57 | |
| d1yhwa1 | 293 | pak1 {Human (Homo sapiens) [TaxId: 9606]} | 99.57 | |
| d1t4ha_ | 270 | Protein kinase wnk1 {Human (Homo sapiens) [TaxId: | 99.57 | |
| d1u5ra_ | 309 | Serine/threonine protein kinase TAO2 {Rat (Rattus | 99.55 | |
| d1a06a_ | 307 | Calmodulin-dependent protein kinase {Rat (Rattus n | 99.54 | |
| d2jfla1 | 288 | STE20-like serine/threonine-protein kinase, SLK {H | 99.53 | |
| d1ckia_ | 299 | Casein kinase-1, CK1 {Rat (Rattus norvegicus) [Tax | 99.52 | |
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 99.52 | |
| d1blxa_ | 305 | Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [T | 99.51 | |
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 99.5 | |
| d1s9ja_ | 322 | Dual specificity mitogen-activated protein kinase | 99.5 | |
| d1omwa3 | 364 | G-protein coupled receptor kinase 2 {Cow (Bos taur | 99.48 | |
| d1o6ya_ | 277 | Mycobacterial protein kinase PknB, catalytic domai | 99.48 | |
| d1koaa2 | 350 | Twitchin, kinase domain {Caenorhabditis elegans, p | 99.48 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 99.47 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 99.47 | |
| d1koba_ | 352 | Twitchin, kinase domain {California sea hare (Aply | 99.46 | |
| d1xjda_ | 320 | Protein kinase C, theta type {Human (Homo sapiens) | 99.46 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 99.46 | |
| d1fota_ | 316 | cAMP-dependent PK, catalytic subunit {Baker's yeas | 99.46 | |
| d2ozaa1 | 335 | MAP kinase activated protein kinase 2, mapkap2 {Hu | 99.45 | |
| d1ua2a_ | 299 | Cell division protein kinase 7, CDK7 {Human (Homo | 99.45 | |
| d1jksa_ | 293 | Death-associated protein kinase, Dap {Human (Homo | 99.45 | |
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 99.44 | |
| d1csna_ | 293 | Casein kinase-1, CK1 {Fission yeast (Schizosacchar | 99.44 | |
| d1o6la_ | 337 | Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9 | 99.44 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 99.44 | |
| d1rdqe_ | 350 | cAMP-dependent PK, catalytic subunit {Mouse (Mus m | 99.43 | |
| d1xwsa_ | 273 | Proto-oncogene serine/threonine-protein kinase Pim | 99.43 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 99.42 | |
| d3blha1 | 318 | Cell division protein kinase 9, CDK9 {Human (Homo | 99.4 | |
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 99.4 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 99.39 | |
| d1phka_ | 277 | gamma-subunit of glycogen phosphorylase kinase (Ph | 99.39 | |
| d1gz8a_ | 298 | Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [T | 99.34 | |
| d1ob3a_ | 286 | Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) | 99.33 | |
| d1cm8a_ | 346 | MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: | 99.31 | |
| d1q8ya_ | 362 | Sky1p {Baker's yeast (Saccharomyces cerevisiae) [T | 99.28 | |
| d1tkia_ | 321 | Titin, kinase domain {Human (Homo sapiens) [TaxId: | 99.27 | |
| d1q5ka_ | 350 | Glycogen synthase kinase-3 beta (Gsk3b) {Human (Ho | 99.26 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 99.25 | |
| d1pmea_ | 345 | MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606 | 99.25 | |
| d2b1pa1 | 355 | c-jun N-terminal kinase (jnk3s) {Human (Homo sapie | 99.21 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 99.2 | |
| d1vzoa_ | 322 | Ribosomal protein S6 kinase alpha 5, Msk1 {Human ( | 99.2 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 99.17 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 99.16 | |
| d1unla_ | 292 | Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [T | 99.12 | |
| d2gfsa1 | 348 | MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606] | 99.11 | |
| d3bqca1 | 328 | Protein kinase CK2, alpha subunit {Rattus norvegic | 99.07 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 98.23 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 98.2 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 97.63 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 97.47 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 96.83 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 96.72 |
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Probab=100.00 E-value=2.7e-38 Score=341.18 Aligned_cols=295 Identities=29% Similarity=0.491 Sum_probs=237.2
Q ss_pred CCHHHHHHHHHHHHhCCCC-CCCCCcCCCCCCCCCCCCCcccCCCCCCCCCCeeccccCCCCCeeeEEEEEEcccCcCC-
Q 038019 2 HDKHAVRALNSILQQWDAP-AVPLWNISGNPCSGSALNATDSEFESPNNNPAIVCNCTFDNGATCHITKLRVYGLNKKG- 79 (866)
Q Consensus 2 ~~~~~~~~l~~~~~~~~~~-~~~~w~~~~~~C~~~~~~~~~~~~~~~~~~~~v~C~~~~~~~~~~~v~~L~l~~~~l~~- 79 (866)
-+|+|++||++||+++.++ .+++|..++|||.+ .| .||+|+.. +...+|++|+|++++++|
T Consensus 3 c~~~e~~aLl~~k~~~~~~~~l~sW~~~~d~C~~--~w------------~gv~C~~~---~~~~~v~~L~L~~~~l~g~ 65 (313)
T d1ogqa_ 3 CNPQDKQALLQIKKDLGNPTTLSSWLPTTDCCNR--TW------------LGVLCDTD---TQTYRVNNLDLSGLNLPKP 65 (313)
T ss_dssp SCHHHHHHHHHHHHHTTCCGGGTTCCTTSCTTTT--CS------------TTEEECCS---SSCCCEEEEEEECCCCSSC
T ss_pred CCHHHHHHHHHHHHHCCCCCcCCCCCCCCCCCCC--cC------------CCeEEeCC---CCcEEEEEEECCCCCCCCC
Confidence 3699999999999999766 47899888999942 24 79999853 234689999999999998
Q ss_pred -CCCcccCCCCCCCEEEccC-CCCCCCCCccccCCCCcCEEeccCCcCCCCCCccccCCCCCCEeeccCCCCCCCCchhh
Q 038019 80 -VIPEELVTLQYLTVLKIDQ-NFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKELTVLAFGTNNFSGALPPEL 157 (866)
Q Consensus 80 -~~p~~l~~l~~L~~L~Ls~-n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l 157 (866)
.+|++|++|++|++|+|++ |+++|.+|..|++|++|++|+|++|++.+..+..+..+.+|++|+++.|.+.+.+|..+
T Consensus 66 ~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l 145 (313)
T d1ogqa_ 66 YPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSI 145 (313)
T ss_dssp EECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGG
T ss_pred CCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcccccccccccccCchhh
Confidence 4899999999999999997 89999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCccEEEeecCCCCCCChhhhhcCcCC-CEEEecCCCCCCCCcccccCCCCCCeEEccCCCCCCCCchhhcCCCCCC
Q 038019 158 GNLAKLEQLYIDSCGAGGEIPSTFAKLRNM-QTLWASDNPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLE 236 (866)
Q Consensus 158 ~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L-~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~ 236 (866)
+++++|+.+++++|.+.+.+|..+..+.++ +.+++++|++++..|..+.++.. ..+++..+.+.+.+|..+..+++|+
T Consensus 146 ~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~-~~l~l~~~~~~~~~~~~~~~~~~l~ 224 (313)
T d1ogqa_ 146 SSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNL-AFVDLSRNMLEGDASVLFGSDKNTQ 224 (313)
T ss_dssp GGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCC-SEEECCSSEEEECCGGGCCTTSCCS
T ss_pred ccCcccceeecccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccccccccccccccc
Confidence 999999999999999999999999988886 88999999999888888887754 4799999999888888888888887
Q ss_pred EEEccCccCCCCCchhhhcCCCCCceeccCcccccCCCcccCCCCCcCEEeeecCcCcccCCcccCCCCCCcEEECcCCC
Q 038019 237 SLQMSDIYNVSSSLDFVMSLKNLTDLSLRNALITGTIPFGIGELQMLQILDLSFNNLTGQIPATLFNIDSLEYLFLGNNS 316 (866)
Q Consensus 237 ~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~ 316 (866)
.|+++++.+.. .++.+..+++|+.|+|++|+++|.+|..++++++|+.|+|++|+|+|.+|. +.++++|+.+++++|+
T Consensus 225 ~l~~~~~~l~~-~~~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~-~~~L~~L~~l~l~~N~ 302 (313)
T d1ogqa_ 225 KIHLAKNSLAF-DLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNK 302 (313)
T ss_dssp EEECCSSEECC-BGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC-STTGGGSCGGGTCSSS
T ss_pred ccccccccccc-cccccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCC-cccCCCCCHHHhCCCc
Confidence 77777665432 233445555555666666665555555555555555555555555555553 3445555555555554
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Probab=99.96 E-value=9.2e-30 Score=273.80 Aligned_cols=248 Identities=25% Similarity=0.384 Sum_probs=199.0
Q ss_pred CCCCEEEccCCCCCC--CCCccccCCCCcCEEeccC-CcCCCCCCccccCCCCCCEeeccCCCCCCCCchhhcCCCCccE
Q 038019 89 QYLTVLKIDQNFFTG--PLPSFIGNLSRLMFLSFSH-NDFSGPVPRELGNLKELTVLAFGTNNFSGALPPELGNLAKLEQ 165 (866)
Q Consensus 89 ~~L~~L~Ls~n~l~~--~~p~~l~~l~~L~~L~Ls~-N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~ 165 (866)
.+++.|||++|.++| .+|..+++|++|++|+|++ |+++|.+|.+|++|++|++|+|++|++.+..+..+..+.+|+.
T Consensus 50 ~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~ 129 (313)
T d1ogqa_ 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred EEEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcc
Confidence 468899999999988 4889999999999999986 8999999999999999999999999999999999999999999
Q ss_pred EEeecCCCCCCChhhhhcCcCCCEEEecCCCCCCCCcccccCCCCC-CeEEccCCCCCCCCchhhcCCCCCCEEEccCcc
Q 038019 166 LYIDSCGAGGEIPSTFAKLRNMQTLWASDNPFTGKIPDFIGNWTKL-KSLRFQGNSFQGPIPSSLSKLASLESLQMSDIY 244 (866)
Q Consensus 166 L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L-~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~n~ 244 (866)
++++.|.+.+.+|..+.++++|+.+++++|.+++.+|..+..+.++ +.++++.|++++..|..+.++..+ .+++..+.
T Consensus 130 l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~-~l~l~~~~ 208 (313)
T d1ogqa_ 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLA-FVDLSRNM 208 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCS-EEECCSSE
T ss_pred cccccccccccCchhhccCcccceeeccccccccccccccccccccccccccccccccccccccccccccc-cccccccc
Confidence 9999999999999999999999999999999999999999888876 889999999998888888776544 57776665
Q ss_pred CCCCCchhhhcCCCCCceeccCcccccCCCcccCCCCCcCEEeeecCcCcccCCcccCCCCCCcEEECcCCCCcccCCcc
Q 038019 245 NVSSSLDFVMSLKNLTDLSLRNALITGTIPFGIGELQMLQILDLSFNNLTGQIPATLFNIDSLEYLFLGNNSLSGTLPDQ 324 (866)
Q Consensus 245 ~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~~p~~ 324 (866)
........+..+++|+.|++++|.+.+.++ .++.+++|+.|+|++|+++|.+|..+.++++|++|+|++|+|+|.+|..
T Consensus 209 ~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~ 287 (313)
T d1ogqa_ 209 LEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG 287 (313)
T ss_dssp EEECCGGGCCTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS
T ss_pred cccccccccccccccccccccccccccccc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCCc
Confidence 554445555666677777777777765544 4666677777777777777777777777777777777777777666642
Q ss_pred c-CCCCCEEEeeCCC
Q 038019 325 K-SENLQKIDLSHNH 338 (866)
Q Consensus 325 ~-~~~L~~L~Ls~N~ 338 (866)
. .++|+.+++++|+
T Consensus 288 ~~L~~L~~l~l~~N~ 302 (313)
T d1ogqa_ 288 GNLQRFDVSAYANNK 302 (313)
T ss_dssp TTGGGSCGGGTCSSS
T ss_pred ccCCCCCHHHhCCCc
Confidence 1 2455555566655
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.92 E-value=1.7e-23 Score=223.55 Aligned_cols=265 Identities=22% Similarity=0.270 Sum_probs=217.8
Q ss_pred eEEEEEEcccCcCCCCCcccCCCCCCCEEEccCCCCCCCCCccccCCCCcCEEeccCCcCCCCCCccccCCCCCCEeecc
Q 038019 66 HITKLRVYGLNKKGVIPEELVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKELTVLAFG 145 (866)
Q Consensus 66 ~v~~L~l~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls 145 (866)
..+.++-++++++ .+|..+. ++|++|+|++|+|+...+..|.++++|++|++++|.+....|..|.++++|++|+++
T Consensus 11 ~~~~~~C~~~~L~-~lP~~l~--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~ 87 (305)
T d1xkua_ 11 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 87 (305)
T ss_dssp ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred cCCEEEecCCCCC-ccCCCCC--CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEeccc
Confidence 3445666666666 5676664 689999999999986666689999999999999999998889999999999999999
Q ss_pred CCCCCCCCchhhcCCCCccEEEeecCCCCCCChhhhhcCcCCCEEEecCCCCC--CCCcccccCCCCCCeEEccCCCCCC
Q 038019 146 TNNFSGALPPELGNLAKLEQLYIDSCGAGGEIPSTFAKLRNMQTLWASDNPFT--GKIPDFIGNWTKLKSLRFQGNSFQG 223 (866)
Q Consensus 146 ~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~--~~~p~~l~~l~~L~~L~L~~N~l~~ 223 (866)
+|+++. +|..+ ...|+.|++..|.+....+..+.....+..++...|... ...+..+..+++|+.+++++|.+..
T Consensus 88 ~n~l~~-l~~~~--~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~ 164 (305)
T d1xkua_ 88 KNQLKE-LPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT 164 (305)
T ss_dssp SSCCSB-CCSSC--CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS
T ss_pred CCccCc-Cccch--hhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCccc
Confidence 999984 45433 468899999999999888888888999999999888654 2345677888999999999999874
Q ss_pred CCchhhcCCCCCCEEEccCccCCCCCchhhhcCCCCCceeccCcccccCCCcccCCCCCcCEEeeecCcCcccCCcccCC
Q 038019 224 PIPSSLSKLASLESLQMSDIYNVSSSLDFVMSLKNLTDLSLRNALITGTIPFGIGELQMLQILDLSFNNLTGQIPATLFN 303 (866)
Q Consensus 224 ~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~ 303 (866)
+|.. .+++|+.|++++|.........+..++.++.|++++|.+.+..+..+..+++|+.|+|++|+|+ .+|..+..
T Consensus 165 -l~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~ 240 (305)
T d1xkua_ 165 -IPQG--LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLAD 240 (305)
T ss_dssp -CCSS--CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTT
T ss_pred -cCcc--cCCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeeccccccc-cccccccc
Confidence 4443 3578999999998888777778888999999999999999888888899999999999999998 56888999
Q ss_pred CCCCcEEECcCCCCcccCCcc--------cCCCCCEEEeeCCCCC
Q 038019 304 IDSLEYLFLGNNSLSGTLPDQ--------KSENLQKIDLSHNHLS 340 (866)
Q Consensus 304 l~~L~~L~L~~N~l~g~~p~~--------~~~~L~~L~Ls~N~l~ 340 (866)
+++|++|+|++|+|+..-... ...+|+.|+|++|+++
T Consensus 241 l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~ 285 (305)
T d1xkua_ 241 HKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 285 (305)
T ss_dssp CSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred ccCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCcCc
Confidence 999999999999998432111 1257888888888875
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=1.5e-24 Score=229.23 Aligned_cols=265 Identities=20% Similarity=0.227 Sum_probs=186.1
Q ss_pred EEEcccCcCCCCCcccCCCCCCCEEEccCCCCCCCCCccccCCCCcCEEeccCCcCCCCCCccccCCCCCCEeecc-CCC
Q 038019 70 LRVYGLNKKGVIPEELVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKELTVLAFG-TNN 148 (866)
Q Consensus 70 L~l~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls-~N~ 148 (866)
++.++++++ .+|..+. +.+++|+|++|+|+...+..|.++++|++|++++|.+....+..+.++..++.|+.. .|.
T Consensus 16 v~c~~~~L~-~iP~~ip--~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~ 92 (284)
T d1ozna_ 16 TSCPQQGLQ-AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92 (284)
T ss_dssp EECCSSCCS-SCCTTCC--TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTT
T ss_pred EEcCCCCCC-ccCCCCC--CCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccc
Confidence 345566665 5566554 568899999999987666778889999999999988887777788888888887764 455
Q ss_pred CCCCCchhhcCCCCccEEEeecCCCCCCChhhhhcCcCCCEEEecCCCCCCCCcccccCCCCCCeEEccCCCCCCCCchh
Q 038019 149 FSGALPPELGNLAKLEQLYIDSCGAGGEIPSTFAKLRNMQTLWASDNPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSS 228 (866)
Q Consensus 149 l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~ 228 (866)
++...+..|.++++|++|++++|.+....+..+..+.+|+.+++++|++++..+..|..+++|+.|+|++|++++..+..
T Consensus 93 ~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~ 172 (284)
T d1ozna_ 93 LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERA 172 (284)
T ss_dssp CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTT
T ss_pred cccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhh
Confidence 66666777777888888888777777666666777777777777777777655666666677777777777766555555
Q ss_pred hcCCCCCCEEEccCccCCCCCchhhhcCCCCCceeccCcccccCCCcccCCCCCcCEEeeecCcCcccCCcccCCCCCCc
Q 038019 229 LSKLASLESLQMSDIYNVSSSLDFVMSLKNLTDLSLRNALITGTIPFGIGELQMLQILDLSFNNLTGQIPATLFNIDSLE 308 (866)
Q Consensus 229 ~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~ 308 (866)
|.++ ++|+.+++++|.+++..|..|..+++|+.|++++|.+.+..+..|..+++|+
T Consensus 173 f~~l------------------------~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~ 228 (284)
T d1ozna_ 173 FRGL------------------------HSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQ 228 (284)
T ss_dssp TTTC------------------------TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCC
T ss_pred hccc------------------------cccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccC
Confidence 5544 4555556666666666677778888888888888888877777888888888
Q ss_pred EEECcCCCCcccCCccc-CCCCCEEEeeCCCCCCccCccccccccccccccccc
Q 038019 309 YLFLGNNSLSGTLPDQK-SENLQKIDLSHNHLSGTFPLWVNSELQMNLAVNNFK 361 (866)
Q Consensus 309 ~L~L~~N~l~g~~p~~~-~~~L~~L~Ls~N~l~g~~p~~~~~~~~l~l~~N~~~ 361 (866)
+|+|++|.+.+.-+... ...++.+....+++.+..|..+......+++.+.++
T Consensus 229 ~L~l~~N~l~C~C~~~~l~~~l~~~~~~~~~~~C~~p~~l~g~~l~~l~~~~l~ 282 (284)
T d1ozna_ 229 YLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSLPQRLAGRDLKRLAANDLQ 282 (284)
T ss_dssp EEECCSSCEECSGGGHHHHHHHHHCCSEECCCBEEESGGGTTCBGGGSCGGGSC
T ss_pred EEEecCCCCCCCccchHHHHHHHhCcCCCCceEeCCchHHcCCccccCCHHHCC
Confidence 88888888875433211 123555566667777777766543322445544443
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=9.7e-25 Score=230.70 Aligned_cols=252 Identities=18% Similarity=0.175 Sum_probs=209.7
Q ss_pred eeeEEEEEEcccCcCCCCCcccCCCCCCCEEEccCCCCCCCCCccccCCCCcCEEecc-CCcCCCCCCccccCCCCCCEe
Q 038019 64 TCHITKLRVYGLNKKGVIPEELVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFS-HNDFSGPVPRELGNLKELTVL 142 (866)
Q Consensus 64 ~~~v~~L~l~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls-~N~l~~~~p~~l~~l~~L~~L 142 (866)
...+++|+|++|+++...+..|.++++|++|++++|.+....+..+.++..++.|+.. .|.++...+..|.++++|++|
T Consensus 31 p~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L 110 (284)
T d1ozna_ 31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL 110 (284)
T ss_dssp CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred CCCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEE
Confidence 3467999999999997777889999999999999999998888889999999999875 566777778899999999999
Q ss_pred eccCCCCCCCCchhhcCCCCccEEEeecCCCCCCChhhhhcCcCCCEEEecCCCCCCCCcccccCCCCCCeEEccCCCCC
Q 038019 143 AFGTNNFSGALPPELGNLAKLEQLYIDSCGAGGEIPSTFAKLRNMQTLWASDNPFTGKIPDFIGNWTKLKSLRFQGNSFQ 222 (866)
Q Consensus 143 ~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~ 222 (866)
++++|.+....+..+..+.+|+.+++++|++++..+..|..+++|++|++++|++++..+..|.++++|+.|++++|+++
T Consensus 111 ~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~ 190 (284)
T d1ozna_ 111 HLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA 190 (284)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred ecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccchhhhhhcccc
Confidence 99999998888888999999999999999999888899999999999999999999888899999999999999999999
Q ss_pred CCCchhhcCCCCCCEEEccCccCCCCCchhhhcCCCCCceeccCcccccCCCcccCCCCCcCEEeeecCcCcccCCcccC
Q 038019 223 GPIPSSLSKLASLESLQMSDIYNVSSSLDFVMSLKNLTDLSLRNALITGTIPFGIGELQMLQILDLSFNNLTGQIPATLF 302 (866)
Q Consensus 223 ~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~ 302 (866)
+..|..|.++++|+.|++++|.+.......+..+++|++|+|++|.+....+.. .-...++.+....+++....|..+.
T Consensus 191 ~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C~~~-~l~~~l~~~~~~~~~~~C~~p~~l~ 269 (284)
T d1ozna_ 191 HVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQRLA 269 (284)
T ss_dssp EECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HHHHHHHHCCSEECCCBEEESGGGT
T ss_pred ccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCCCccch-HHHHHHHhCcCCCCceEeCCchHHc
Confidence 999999999999999999999888887788888888888888888877543311 0112344455556666666666554
Q ss_pred CCCCCcEEECcCCCCcc
Q 038019 303 NIDSLEYLFLGNNSLSG 319 (866)
Q Consensus 303 ~l~~L~~L~L~~N~l~g 319 (866)
+ +..++++.+.|+|
T Consensus 270 g---~~l~~l~~~~l~g 283 (284)
T d1ozna_ 270 G---RDLKRLAANDLQG 283 (284)
T ss_dssp T---CBGGGSCGGGSCC
T ss_pred C---CccccCCHHHCCC
Confidence 3 2333344444443
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Probab=99.91 E-value=3.2e-23 Score=228.52 Aligned_cols=259 Identities=27% Similarity=0.356 Sum_probs=154.9
Q ss_pred eeEEEEEEcccCcCCCCCcccCCCCCCCEEEccCCCCCCCCCccccCCCCcCEEeccCCcCCCCCCccccCCCCCCEeec
Q 038019 65 CHITKLRVYGLNKKGVIPEELVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKELTVLAF 144 (866)
Q Consensus 65 ~~v~~L~l~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 144 (866)
.++++|++.+++++.. +.+..|++|++|+|++|+|++. | .|+++++|++|+|++|.+++.. .++++++|+.|++
T Consensus 44 ~~l~~L~l~~~~I~~l--~gl~~L~nL~~L~Ls~N~l~~l-~-~l~~L~~L~~L~L~~n~i~~i~--~l~~l~~L~~L~~ 117 (384)
T d2omza2 44 DQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDI-T-PLKNLTKLVDILMNNNQIADIT--PLANLTNLTGLTL 117 (384)
T ss_dssp TTCCEEECCSSCCCCC--TTGGGCTTCCEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCCCG--GGTTCTTCCEEEC
T ss_pred CCCCEEECCCCCCCCc--cccccCCCCCEEeCcCCcCCCC-c-cccCCccccccccccccccccc--ccccccccccccc
Confidence 3689999999988753 4588899999999999999864 4 3899999999999999998643 3889999999999
Q ss_pred cCCCCCCCCchhhcCCCCccEEEeecCCC-----------------------------------------CCCChhhhhc
Q 038019 145 GTNNFSGALPPELGNLAKLEQLYIDSCGA-----------------------------------------GGEIPSTFAK 183 (866)
Q Consensus 145 s~N~l~~~~p~~l~~l~~L~~L~L~~n~l-----------------------------------------~~~~p~~~~~ 183 (866)
++|.+++..+. .....+..+....|.+ .......+..
T Consensus 118 ~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (384)
T d2omza2 118 FNNQITDIDPL--KNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAK 195 (384)
T ss_dssp CSSCCCCCGGG--TTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGG
T ss_pred ccccccccccc--cccccccccccccccccccccccccccccccccccccchhhhhcccccccccccccccccccccccc
Confidence 98887754221 1222222222221111 0111233445
Q ss_pred CcCCCEEEecCCCCCCCCcccccCCCCCCeEEccCCCCCCCCchhhcCCCCCCEEEccCccCCCCCchhhhcCCCCCcee
Q 038019 184 LRNMQTLWASDNPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLESLQMSDIYNVSSSLDFVMSLKNLTDLS 263 (866)
Q Consensus 184 l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ 263 (866)
+++++.|++++|.+++..| +...++|+.|++++|.++.. ..+..+++|+.|++++|.+... ..+..+++|+.|+
T Consensus 196 l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~--~~~~~~~~L~~L~ 269 (384)
T d2omza2 196 LTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNL--APLSGLTKLTELK 269 (384)
T ss_dssp CTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGTTCTTCSEEE
T ss_pred ccccceeeccCCccCCCCc--ccccCCCCEEECCCCCCCCc--chhhcccccchhccccCccCCC--CcccccccCCEee
Confidence 5566666666666654433 23345566666666665532 2455556666666666554422 2345555666666
Q ss_pred ccCcccccCCCcccCCCCCcCEEeeecCcCcccCCcccCCCCCCcEEECcCCCCcccCCcccCCCCCEEEeeCCCCCC
Q 038019 264 LRNALITGTIPFGIGELQMLQILDLSFNNLTGQIPATLFNIDSLEYLFLGNNSLSGTLPDQKSENLQKIDLSHNHLSG 341 (866)
Q Consensus 264 L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~~p~~~~~~L~~L~Ls~N~l~g 341 (866)
+++|.+++..+ +..++.++.+++..|.+++ ...+..+++++.|++++|++++..+...+++|+.|++++|++++
T Consensus 270 l~~~~l~~~~~--~~~~~~l~~l~~~~n~l~~--~~~~~~~~~l~~L~ls~n~l~~l~~l~~l~~L~~L~L~~n~l~~ 343 (384)
T d2omza2 270 LGANQISNISP--LAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFANNKVSD 343 (384)
T ss_dssp CCSSCCCCCGG--GTTCTTCSEEECCSSCCSC--CGGGGGCTTCSEEECCSSCCSCCGGGGGCTTCCEEECCSSCCCC
T ss_pred ccCcccCCCCc--ccccccccccccccccccc--ccccchhcccCeEECCCCCCCCCcccccCCCCCEEECCCCCCCC
Confidence 66665554322 4455555556665555543 22344555555666666655554333444556666666665553
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.90 E-value=2.7e-22 Score=214.09 Aligned_cols=268 Identities=18% Similarity=0.192 Sum_probs=225.1
Q ss_pred CCeeccccC----CCCCeeeEEEEEEcccCcCCCCCcccCCCCCCCEEEccCCCCCCCCCccccCCCCcCEEeccCCcCC
Q 038019 51 PAIVCNCTF----DNGATCHITKLRVYGLNKKGVIPEELVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFS 126 (866)
Q Consensus 51 ~~v~C~~~~----~~~~~~~v~~L~l~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 126 (866)
..|.|.... +.....+++.|++++|+++...+..|.++++|++|++++|.+....|..|.++++|++|+|++|+++
T Consensus 13 ~~~~C~~~~L~~lP~~l~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~ 92 (305)
T d1xkua_ 13 RVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK 92 (305)
T ss_dssp TEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS
T ss_pred CEEEecCCCCCccCCCCCCCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCccC
Confidence 467775421 1122357999999999998777778999999999999999999888899999999999999999998
Q ss_pred CCCCccccCCCCCCEeeccCCCCCCCCchhhcCCCCccEEEeecCCCC--CCChhhhhcCcCCCEEEecCCCCCCCCccc
Q 038019 127 GPVPRELGNLKELTVLAFGTNNFSGALPPELGNLAKLEQLYIDSCGAG--GEIPSTFAKLRNMQTLWASDNPFTGKIPDF 204 (866)
Q Consensus 127 ~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~--~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~ 204 (866)
.+|..+ ...|+.|++.+|.+.+..+..+.....++.+....|... ...+..|..+++|+.+++++|.++ .+|..
T Consensus 93 -~l~~~~--~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~-~l~~~ 168 (305)
T d1xkua_ 93 -ELPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQG 168 (305)
T ss_dssp -BCCSSC--CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCSS
T ss_pred -cCccch--hhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCcc-ccCcc
Confidence 456543 368999999999999887778888899999999887643 345677899999999999999988 45544
Q ss_pred ccCCCCCCeEEccCCCCCCCCchhhcCCCCCCEEEccCccCCCCCchhhhcCCCCCceeccCcccccCCCcccCCCCCcC
Q 038019 205 IGNWTKLKSLRFQGNSFQGPIPSSLSKLASLESLQMSDIYNVSSSLDFVMSLKNLTDLSLRNALITGTIPFGIGELQMLQ 284 (866)
Q Consensus 205 l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~ 284 (866)
+ +++|+.|++++|...+..+..|.+++.++.|++++|.+.......+.++++|++|+|++|.++ .+|..+..+++|+
T Consensus 169 ~--~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~ 245 (305)
T d1xkua_ 169 L--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQ 245 (305)
T ss_dssp C--CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCC
T ss_pred c--CCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeeccccccc-ccccccccccCCC
Confidence 3 579999999999999999999999999999999999998888888999999999999999998 5678899999999
Q ss_pred EEeeecCcCcccCCcc------cCCCCCCcEEECcCCCCc-ccCCccc
Q 038019 285 ILDLSFNNLTGQIPAT------LFNIDSLEYLFLGNNSLS-GTLPDQK 325 (866)
Q Consensus 285 ~L~Ls~N~l~~~~p~~------l~~l~~L~~L~L~~N~l~-g~~p~~~ 325 (866)
.|+|++|+|+...... +..+.+|+.|+|++|++. ..++...
T Consensus 246 ~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~~~~~~~~~ 293 (305)
T d1xkua_ 246 VVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPST 293 (305)
T ss_dssp EEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGG
T ss_pred EEECCCCccCccChhhccCcchhcccCCCCEEECCCCcCccCcCCHhH
Confidence 9999999998643333 345789999999999986 4455443
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Probab=99.89 E-value=4.4e-22 Score=219.30 Aligned_cols=277 Identities=23% Similarity=0.282 Sum_probs=193.0
Q ss_pred eeeEEEEEEcccCcCCCCCcccCCCCCCCEEEccCCCCCCCCCccccCCCCcCEEeccCCcCCCCCCccccCCCCCCEee
Q 038019 64 TCHITKLRVYGLNKKGVIPEELVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKELTVLA 143 (866)
Q Consensus 64 ~~~v~~L~l~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 143 (866)
..++++|++++|++++.. .|+++++|++|+|++|.+.+.. .++++++|+.|++++|.+++..+. .....+..+.
T Consensus 65 L~nL~~L~Ls~N~l~~l~--~l~~L~~L~~L~L~~n~i~~i~--~l~~l~~L~~L~~~~~~~~~~~~~--~~~~~~~~~~ 138 (384)
T d2omza2 65 LNNLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQIADIT--PLANLTNLTGLTLFNNQITDIDPL--KNLTNLNRLE 138 (384)
T ss_dssp CTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCCGGG--TTCTTCSEEE
T ss_pred CCCCCEEeCcCCcCCCCc--cccCCccccccccccccccccc--cccccccccccccccccccccccc--cccccccccc
Confidence 357999999999998754 3999999999999999998643 389999999999999988753322 2222333332
Q ss_pred ccCCCC-----------------------------------------CCCCchhhcCCCCccEEEeecCCCCCCChhhhh
Q 038019 144 FGTNNF-----------------------------------------SGALPPELGNLAKLEQLYIDSCGAGGEIPSTFA 182 (866)
Q Consensus 144 Ls~N~l-----------------------------------------~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~ 182 (866)
...|.+ .......+..+++++.|++++|.+++..| +.
T Consensus 139 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~l~~n~i~~~~~--~~ 216 (384)
T d2omza2 139 LSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITP--LG 216 (384)
T ss_dssp EEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG--GG
T ss_pred cccccccccccccccccccccccccccchhhhhccccccccccccccccccccccccccccceeeccCCccCCCCc--cc
Confidence 222211 11223456667788888888888777654 45
Q ss_pred cCcCCCEEEecCCCCCCCCcccccCCCCCCeEEccCCCCCCCCchhhcCCCCCCEEEccCccCCCCCchhhhcCCCCCce
Q 038019 183 KLRNMQTLWASDNPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLESLQMSDIYNVSSSLDFVMSLKNLTDL 262 (866)
Q Consensus 183 ~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L 262 (866)
.+++|++|++++|.++. + ..+..+++|+.|++++|.+++.. .+..+++|+.|+++++.+... ..+..++.++.+
T Consensus 217 ~~~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~l~~n~l~~~~--~~~~~~~L~~L~l~~~~l~~~--~~~~~~~~l~~l 290 (384)
T d2omza2 217 ILTNLDELSLNGNQLKD-I-GTLASLTNLTDLDLANNQISNLA--PLSGLTKLTELKLGANQISNI--SPLAGLTALTNL 290 (384)
T ss_dssp GCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCCCC--GGGTTCTTCSEE
T ss_pred ccCCCCEEECCCCCCCC-c-chhhcccccchhccccCccCCCC--cccccccCCEeeccCcccCCC--Cccccccccccc
Confidence 67788888888888774 2 35677788888888888887543 377778888888887766532 346677778888
Q ss_pred eccCcccccCCCcccCCCCCcCEEeeecCcCcccCCcccCCCCCCcEEECcCCCCcccCCcccCCCCCEEEeeCCCCCCc
Q 038019 263 SLRNALITGTIPFGIGELQMLQILDLSFNNLTGQIPATLFNIDSLEYLFLGNNSLSGTLPDQKSENLQKIDLSHNHLSGT 342 (866)
Q Consensus 263 ~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~~p~~~~~~L~~L~Ls~N~l~g~ 342 (866)
.+..|.+.+. ..+..+++++.|++++|++++.. .+..+++|++|++++|++++......+++|++|++++|++++.
T Consensus 291 ~~~~n~l~~~--~~~~~~~~l~~L~ls~n~l~~l~--~l~~l~~L~~L~L~~n~l~~l~~l~~l~~L~~L~l~~N~l~~l 366 (384)
T d2omza2 291 ELNENQLEDI--SPISNLKNLTYLTLYFNNISDIS--PVSSLTKLQRLFFANNKVSDVSSLANLTNINWLSAGHNQISDL 366 (384)
T ss_dssp ECCSSCCSCC--GGGGGCTTCSEEECCSSCCSCCG--GGGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCBC
T ss_pred cccccccccc--cccchhcccCeEECCCCCCCCCc--ccccCCCCCEEECCCCCCCCChhHcCCCCCCEEECCCCcCCCC
Confidence 8888877753 34667778888888888887643 2677788888888888887532223457788888888888876
Q ss_pred cCccccccc-ccccccc
Q 038019 343 FPLWVNSEL-QMNLAVN 358 (866)
Q Consensus 343 ~p~~~~~~~-~l~l~~N 358 (866)
.|-.-...+ .|+|++|
T Consensus 367 ~~l~~l~~L~~L~L~~N 383 (384)
T d2omza2 367 TPLANLTRITQLGLNDQ 383 (384)
T ss_dssp GGGTTCTTCSEEECCCE
T ss_pred hhhccCCCCCEeeCCCC
Confidence 552211222 3777665
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.86 E-value=3.7e-21 Score=200.75 Aligned_cols=201 Identities=21% Similarity=0.179 Sum_probs=99.6
Q ss_pred CCCCCCEEEccCCCCCCCCCccccCCCCcCEEeccCCcCCCCCCccccCCCCCCEeeccCCCCCCCCchhhcCCCCccEE
Q 038019 87 TLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKELTVLAFGTNNFSGALPPELGNLAKLEQL 166 (866)
Q Consensus 87 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 166 (866)
+...+.++|.+++.++ .+|..+. ++|++|+|++|+|++..+..|.++++|++|+|++|+++. ++ .++.+++|++|
T Consensus 8 ~~~~~~~v~C~~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L 82 (266)
T d1p9ag_ 8 KVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQ-VDGTLPVLGTL 82 (266)
T ss_dssp CSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EE-CCSCCTTCCEE
T ss_pred ccCCCeEEEccCCCCC-eeCcCcC--cCCCEEECcCCcCCCcCHHHhhccccccccccccccccc-cc-ccccccccccc
Confidence 4445555666666666 3454443 356666666666665444556666666666666666552 22 23444444444
Q ss_pred EeecCCCCCCChhhhhcCcCCCEEEecCCCCCCCCcccccCCCCCCeEEccCCCCCCCCchhhcCCCCCCEEEccCccCC
Q 038019 167 YIDSCGAGGEIPSTFAKLRNMQTLWASDNPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLESLQMSDIYNV 246 (866)
Q Consensus 167 ~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~n~~~ 246 (866)
+|++|+++. ++..+.++++|+.|++++|.+....+..+..+.+|+.|++++|.+.
T Consensus 83 ~Ls~N~l~~-------------------------~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~ 137 (266)
T d1p9ag_ 83 DLSHNQLQS-------------------------LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137 (266)
T ss_dssp ECCSSCCSS-------------------------CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCC
T ss_pred ccccccccc-------------------------cccccccccccccccccccccceeeccccccccccccccccccccc
Confidence 444444432 2333444444444444444444333333334444444443333333
Q ss_pred CCCchhhhcCCCCCceeccCcccccCCCcccCCCCCcCEEeeecCcCcccCCcccCCCCCCcEEECcCCCCc
Q 038019 247 SSSLDFVMSLKNLTDLSLRNALITGTIPFGIGELQMLQILDLSFNNLTGQIPATLFNIDSLEYLFLGNNSLS 318 (866)
Q Consensus 247 ~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~ 318 (866)
......+..+++|+.|++++|++++..+..|..+++|+.|+|++|+|+ .+|..+..+++|+.|+|++|.+.
T Consensus 138 ~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~ 208 (266)
T d1p9ag_ 138 TLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208 (266)
T ss_dssp CCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred eeccccccccccchhcccccccccccCccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCCC
Confidence 322233333444444455555555444445555555555555555555 45555555555555555555443
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.85 E-value=7.3e-21 Score=198.44 Aligned_cols=197 Identities=20% Similarity=0.222 Sum_probs=159.4
Q ss_pred EEEEEEcccCcCCCCCcccCCCCCCCEEEccCCCCCCCCCccccCCCCcCEEeccCCcCCCCCCccccCCCCCCEeeccC
Q 038019 67 ITKLRVYGLNKKGVIPEELVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKELTVLAFGT 146 (866)
Q Consensus 67 v~~L~l~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~ 146 (866)
..+++.++++++. +|+.|. ++|++|+|++|+|++..+..|.++++|++|+|++|+|+. +| .++.+++|++|+|++
T Consensus 12 ~~~v~C~~~~L~~-iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~Ls~ 86 (266)
T d1p9ag_ 12 HLEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQ-VDGTLPVLGTLDLSH 86 (266)
T ss_dssp CCEEECTTSCCSS-CCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EE-CCSCCTTCCEEECCS
T ss_pred CeEEEccCCCCCe-eCcCcC--cCCCEEECcCCcCCCcCHHHhhccccccccccccccccc-cc-ccccccccccccccc
Confidence 4556889999984 787665 589999999999997777889999999999999999984 44 468899999999999
Q ss_pred CCCCCCCchhhcCCCCccEEEeecCCCCCCChhhhhcCcCCCEEEecCCCCCCCCcccccCCCCCCeEEccCCCCCCCCc
Q 038019 147 NNFSGALPPELGNLAKLEQLYIDSCGAGGEIPSTFAKLRNMQTLWASDNPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIP 226 (866)
Q Consensus 147 N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p 226 (866)
|+++. .+..+..+++|+.|++++|.+....+..+..+.+|++|++++|.++...+..+..+++|+.|++++|++++..+
T Consensus 87 N~l~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~ 165 (266)
T d1p9ag_ 87 NQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPA 165 (266)
T ss_dssp SCCSS-CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCT
T ss_pred ccccc-cccccccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhcccccccccccCc
Confidence 99984 46788899999999999999988888888888899999999998887777777788888888888888887666
Q ss_pred hhhcCCCCCCEEEccCccCCCCCchhhhcCCCCCceeccCcccccCCCcccCCCCCcCEEeeecCcCc
Q 038019 227 SSLSKLASLESLQMSDIYNVSSSLDFVMSLKNLTDLSLRNALITGTIPFGIGELQMLQILDLSFNNLT 294 (866)
Q Consensus 227 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 294 (866)
..|..+++|+.|+ |++|.++ .+|..+..+++|+.|+|++|.+.
T Consensus 166 ~~~~~l~~L~~L~------------------------Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~ 208 (266)
T d1p9ag_ 166 GLLNGLENLDTLL------------------------LQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208 (266)
T ss_dssp TTTTTCTTCCEEE------------------------CCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred cccccccccceee------------------------cccCCCc-ccChhHCCCCCCCEEEecCCCCC
Confidence 6666665555555 4555555 45556666777788888887765
|
| >d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: B-Raf kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.77 E-value=3.1e-20 Score=194.09 Aligned_cols=144 Identities=16% Similarity=0.219 Sum_probs=95.8
Q ss_pred hhccCCCCCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeec---CCCCchhHHHHHHHHHHHHHh
Q 038019 635 VLVGIGSKPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMR---GHLTEKADVFSFGVVALEIIS 711 (866)
Q Consensus 635 ~~~~~~~~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~---~~~t~ksDVySfGvvLlEl~t 711 (866)
++|+.....|++.+.+...++.|||+++.+.............||+.|||||++.. +.++.|+|||||||++|||+|
T Consensus 125 ivHrDlKp~NiLl~~~~~~Kl~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~~~~~~sDiwS~Gv~l~el~t 204 (276)
T d1uwha_ 125 IIHRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQFEQLSGSILWMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMT 204 (276)
T ss_dssp CCCSCCCGGGEEEETTSSEEECCCCCSCC------------CCCCGGGCCHHHHTTCSSCCCCHHHHHHHHHHHHHHHHH
T ss_pred EeccccCHHHEEEcCCCCEEEccccceeeccccCCcccccccccCcccCCHHHHhcccCCCCCchhhhhhhHHHHHHHHH
Confidence 33444444588888888899999999998876555555666789999999999863 468999999999999999999
Q ss_pred cCCCCCCCchhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhcCc
Q 038019 712 GRASSDKSLDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLAGDI 788 (866)
Q Consensus 712 g~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~~~~ 788 (866)
|+.||........ +......+ ...|.+..........+.+++.+||+.+|++||||+||++.|+...
T Consensus 205 g~~Pf~~~~~~~~------~~~~~~~~----~~~p~~~~~~~~~~~~l~~li~~cl~~dp~~RPt~~~il~~Le~l~ 271 (276)
T d1uwha_ 205 GQLPYSNINNRDQ------IIFMVGRG----YLSPDLSKVRSNCPKAMKRLMAECLKKKRDERPLFPQILASIELLA 271 (276)
T ss_dssp SSCTTTTCCCHHH------HHHHHHHT----SCCCCGGGSCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred CCCCCCCCChHHH------HHHHHhcC----CCCCcchhccccchHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHH
Confidence 9999975433221 11112111 2233332222222344566777999999999999999999998544
|
| >d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: epha2 receptor tyrosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.73 E-value=2.6e-19 Score=188.00 Aligned_cols=142 Identities=18% Similarity=0.178 Sum_probs=92.0
Q ss_pred hhccCCCCCcccCHHHHHHHhcCCccccccCCCCcee-EEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcC
Q 038019 635 VLVGIGSKPNIFGYAELRSATKDFNRSNKLGEGGYGP-VYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGR 713 (866)
Q Consensus 635 ~~~~~~~~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~-vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~ 713 (866)
++|+.....|++...+...++.|||+++.+..+.... ...+..||++|||||++..+.++.|+|||||||++|||+||+
T Consensus 131 iiHrDlKp~NILl~~~~~~Kl~DFGla~~~~~~~~~~~~~~~~~gt~~Y~APE~l~~~~~~~~sDI~S~Gvil~el~t~~ 210 (283)
T d1mqba_ 131 YVHRDLAARNILVNSNLVCKVSDFGLSRVLEDDPEATYTTSGGKIPIRWTAPEAISYRKFTSASDVWSFGIVMWEVMTYG 210 (283)
T ss_dssp CCCSCCCGGGEEECTTCCEEECCCCC-----------------CCCGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTS
T ss_pred cccCccccceEEECCCCeEEEcccchhhcccCCCccceEeccCCCCccccCHHHHccCCCCCcccccccHHHHHHHHhCC
Confidence 3344444458888888889999999999886543322 234557899999999999999999999999999999999976
Q ss_pred CCCCCCchhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhcCcCC
Q 038019 714 ASSDKSLDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLAGDIEV 790 (866)
Q Consensus 714 ~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~~~~~~ 790 (866)
.|+....... .+.+. +.++. .+.. +.....++.+++.+||+.+|++||+|.||+++|+..++.
T Consensus 211 ~~~~~~~~~~--~~~~~----i~~~~-----~~~~---~~~~~~~l~~li~~cl~~~p~~RPt~~eil~~L~~l~~~ 273 (283)
T d1mqba_ 211 ERPYWELSNH--EVMKA----INDGF-----RLPT---PMDCPSAIYQLMMQCWQQERARRPKFADIVSILDKLIRA 273 (283)
T ss_dssp CCTTTTCCHH--HHHHH----HHTTC-----CCCC---CTTCBHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHHHS
T ss_pred CCccccCCHH--HHHHH----HhccC-----CCCC---chhhHHHHHHHHHHHCcCCHhHCcCHHHHHHHHHHHhhC
Confidence 6654332221 12222 22221 1111 111223466677899999999999999999999876554
|
| >d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: ephb2 receptor tyrosine kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.72 E-value=4.9e-19 Score=187.22 Aligned_cols=140 Identities=21% Similarity=0.205 Sum_probs=89.1
Q ss_pred hccCCCCCcccCHHHHHHHhcCCccccccCCCCceeEEE---eecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHh-
Q 038019 636 LVGIGSKPNIFGYAELRSATKDFNRSNKLGEGGYGPVYK---VTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIIS- 711 (866)
Q Consensus 636 ~~~~~~~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~---~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~t- 711 (866)
+|+.....|++.+++...++.|||+++.+........+. +..||+.|||||.+.++.++.++|||||||++|||+|
T Consensus 150 iHrDlKp~NILl~~~~~~Kl~DFGla~~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~sDvwS~Gvvl~el~t~ 229 (299)
T d1jpaa_ 150 VHRDLAARNILVNSNLVCKVSDFGLSRFLEDDTSDPTYTSALGGKIPIRWTAPEAIQYRKFTSASDVWSYGIVMWEVMSY 229 (299)
T ss_dssp CCSCCCGGGEEECTTCCEEECCC-----------------------CGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTT
T ss_pred ccCccccceEEECCCCcEEECCcccceEccCCCCcceeeecccccCCccccCHHHHhcCCCCcccccccchHHHHHHHhC
Confidence 344444458888888889999999999887654433333 3457899999999999999999999999999999998
Q ss_pred cCCCCCCCchhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhcCcCC
Q 038019 712 GRASSDKSLDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLAGDIEV 790 (866)
Q Consensus 712 g~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~~~~~~ 790 (866)
|+.|+...... .+...+. .+.. +.. +.+....+.+++.+||+.+|++||||.||++.|+..++.
T Consensus 230 g~~Pf~~~~~~---~~~~~i~----~~~~-----~~~---~~~~~~~l~~li~~cl~~~P~~RPs~~ei~~~L~~~l~~ 293 (299)
T d1jpaa_ 230 GERPYWDMTNQ---DVINAIE----QDYR-----LPP---PMDCPSALHQLMLDCWQKDRNHRPKFGQIVNTLDKMIRN 293 (299)
T ss_dssp SCCTTTTCCHH---HHHHHHH----TTCC-----CCC---CTTCCHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHHHS
T ss_pred CCCCCCCCCHH---HHHHHHH----cCCC-----CCC---CccchHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHhcC
Confidence 89998754432 2332222 1111 111 111223456677799999999999999999999865543
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Probab=99.72 E-value=2e-17 Score=167.70 Aligned_cols=207 Identities=20% Similarity=0.256 Sum_probs=122.5
Q ss_pred CCCCEEEccCCCCCCCCCccccCCCCcCEEeccCCcCCCCCCccccCCCCCCEeeccCCCCCCCCchhhcCCCCccEEEe
Q 038019 89 QYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKELTVLAFGTNNFSGALPPELGNLAKLEQLYI 168 (866)
Q Consensus 89 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 168 (866)
.++..++++.+.+++.+ .+..+.+|++|++.+|+|+. + ..+..+++|++|+|++|.+++..| +..+++|+.|++
T Consensus 19 ~~~~~~~l~~~~~~d~~--~~~~l~~L~~L~l~~~~i~~-l-~~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~ 92 (227)
T d1h6ua2 19 ANAIKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVTT-I-EGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELEL 92 (227)
T ss_dssp HHHHHHHTTCSSTTSEE--CHHHHHTCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEEC
T ss_pred HHHHHHHhCCCCcCCcC--CHHHcCCcCEEECCCCCCCc-c-hhHhcCCCCcEeecCCceeecccc--cccccccccccc
Confidence 34445567777776543 34667788888888888874 3 347778888888888888775433 777777777777
Q ss_pred ecCCCCCCChhhhhcCcCCCEEEecCCCCCCCCcccccCCCCCCeEEccCCCCCCCCchhhcCCCCCCEEEccCccCCCC
Q 038019 169 DSCGAGGEIPSTFAKLRNMQTLWASDNPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLESLQMSDIYNVSS 248 (866)
Q Consensus 169 ~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~n~~~~~ 248 (866)
++|.++. + ..+.++++|+.|.++++...+. ..+...+.+..+.++.+.+... ..+.++++|+.|++++|.
T Consensus 93 ~~n~~~~-i-~~l~~l~~L~~l~l~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~n~---- 162 (227)
T d1h6ua2 93 SGNPLKN-V-SAIAGLQSIKTLDLTSTQITDV--TPLAGLSNLQVLYLDLNQITNI--SPLAGLTNLQYLSIGNAQ---- 162 (227)
T ss_dssp CSCCCSC-C-GGGTTCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCCEEECCSSC----
T ss_pred ccccccc-c-cccccccccccccccccccccc--chhccccchhhhhchhhhhchh--hhhccccccccccccccc----
Confidence 7776653 2 2466777777777777766543 2344556666777666666532 224445555555555444
Q ss_pred CchhhhcCCCCCceeccCcccccCCCcccCCCCCcCEEeeecCcCcccCCcccCCCCCCcEEECcCCCCcccCCcccCCC
Q 038019 249 SLDFVMSLKNLTDLSLRNALITGTIPFGIGELQMLQILDLSFNNLTGQIPATLFNIDSLEYLFLGNNSLSGTLPDQKSEN 328 (866)
Q Consensus 249 ~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~~p~~~~~~ 328 (866)
+.+.. .++.+++|+.|+|++|++++. + .+..+++|++|+|++|++++..|-...++
T Consensus 163 --------------------~~~~~--~l~~l~~L~~L~Ls~n~l~~l-~-~l~~l~~L~~L~Ls~N~lt~i~~l~~l~~ 218 (227)
T d1h6ua2 163 --------------------VSDLT--PLANLSKLTTLKADDNKISDI-S-PLASLPNLIEVHLKNNQISDVSPLANTSN 218 (227)
T ss_dssp --------------------CCCCG--GGTTCTTCCEEECCSSCCCCC-G-GGGGCTTCCEEECTTSCCCBCGGGTTCTT
T ss_pred --------------------cccch--hhcccccceecccCCCccCCC-h-hhcCCCCCCEEECcCCcCCCCcccccCCC
Confidence 33221 244455555555555555432 1 24555555555555555554333333455
Q ss_pred CCEEEee
Q 038019 329 LQKIDLS 335 (866)
Q Consensus 329 L~~L~Ls 335 (866)
|+.|+++
T Consensus 219 L~~L~ls 225 (227)
T d1h6ua2 219 LFIVTLT 225 (227)
T ss_dssp CCEEEEE
T ss_pred CCEEEee
Confidence 5555554
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Probab=99.72 E-value=3.9e-17 Score=165.51 Aligned_cols=207 Identities=22% Similarity=0.280 Sum_probs=154.6
Q ss_pred eeEEEEEEcccCcCCCCCcccCCCCCCCEEEccCCCCCCCCCccccCCCCcCEEeccCCcCCCCCCccccCCCCCCEeec
Q 038019 65 CHITKLRVYGLNKKGVIPEELVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKELTVLAF 144 (866)
Q Consensus 65 ~~v~~L~l~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 144 (866)
.++..+++..+.+++.+ .+..+.+|+.|++++|.++. ++ .+.++++|++|+|++|.+++..| +..+++|++|++
T Consensus 19 ~~~~~~~l~~~~~~d~~--~~~~l~~L~~L~l~~~~i~~-l~-~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~ 92 (227)
T d1h6ua2 19 ANAIKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELEL 92 (227)
T ss_dssp HHHHHHHTTCSSTTSEE--CHHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEEC
T ss_pred HHHHHHHhCCCCcCCcC--CHHHcCCcCEEECCCCCCCc-ch-hHhcCCCCcEeecCCceeecccc--cccccccccccc
Confidence 34445556666666544 45678899999999999985 44 58999999999999999986543 899999999999
Q ss_pred cCCCCCCCCchhhcCCCCccEEEeecCCCCCCChhhhhcCcCCCEEEecCCCCCCCCcccccCCCCCCeEEccCCCCCCC
Q 038019 145 GTNNFSGALPPELGNLAKLEQLYIDSCGAGGEIPSTFAKLRNMQTLWASDNPFTGKIPDFIGNWTKLKSLRFQGNSFQGP 224 (866)
Q Consensus 145 s~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ 224 (866)
++|.++. + ..+..+++|+.|.+++|...+. ..+...+.++.+.++.+.+.... .+.+.++|+.|++++|.+...
T Consensus 93 ~~n~~~~-i-~~l~~l~~L~~l~l~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~L~~L~l~~n~~~~~ 166 (227)
T d1h6ua2 93 SGNPLKN-V-SAIAGLQSIKTLDLTSTQITDV--TPLAGLSNLQVLYLDLNQITNIS--PLAGLTNLQYLSIGNAQVSDL 166 (227)
T ss_dssp CSCCCSC-C-GGGTTCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECCSSCCCCCG--GGGGCTTCCEEECCSSCCCCC
T ss_pred ccccccc-c-cccccccccccccccccccccc--chhccccchhhhhchhhhhchhh--hhccccccccccccccccccc
Confidence 9999874 3 4688999999999999987654 34677899999999999887543 467789999999999998754
Q ss_pred CchhhcCCCCCCEEEccCccCCCCCchhhhcCCCCCceeccCcccccCCCcccCCCCCcCEEeee
Q 038019 225 IPSSLSKLASLESLQMSDIYNVSSSLDFVMSLKNLTDLSLRNALITGTIPFGIGELQMLQILDLS 289 (866)
Q Consensus 225 ~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls 289 (866)
..+.++++|+.|++++|.+.. .+.+..+++|++|+|++|++++..| ++.+++|+.|+++
T Consensus 167 --~~l~~l~~L~~L~Ls~n~l~~--l~~l~~l~~L~~L~Ls~N~lt~i~~--l~~l~~L~~L~ls 225 (227)
T d1h6ua2 167 --TPLANLSKLTTLKADDNKISD--ISPLASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLT 225 (227)
T ss_dssp --GGGTTCTTCCEEECCSSCCCC--CGGGGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEE
T ss_pred --hhhcccccceecccCCCccCC--ChhhcCCCCCCEEECcCCcCCCCcc--cccCCCCCEEEee
Confidence 337778888888777766543 2335555666666666665554322 4555555555554
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.71 E-value=2e-17 Score=169.44 Aligned_cols=217 Identities=16% Similarity=0.067 Sum_probs=142.2
Q ss_pred EEEEcccCcCCCCCcccCCCCCCCEEEccCCCCCCCCCccccCCCCcCEEeccCCcCCCCC-CccccCCCCCCEeeccC-
Q 038019 69 KLRVYGLNKKGVIPEELVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPV-PRELGNLKELTVLAFGT- 146 (866)
Q Consensus 69 ~L~l~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~Ls~- 146 (866)
.++.++.+++ .+|+.+. +++++|+|++|+|+...+..|.++++|++|+|++|.+...+ +..|.+++++++|.+..
T Consensus 12 ~i~c~~~~l~-~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~ 88 (242)
T d1xwdc1 12 VFLCQESKVT-EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 88 (242)
T ss_dssp EEEEESCSCS-SCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECC
T ss_pred EEEEeCCCCC-CcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccccc
Confidence 5666666776 6776654 57899999999998666667899999999999999887644 45788899999998764
Q ss_pred CCCCCCCchhhcCCCCccEEEeecCCCCCCCh-hhhhcCcCCCEEEecCCCCCCCCcccccCCC-CCCeEEccCCCCCCC
Q 038019 147 NNFSGALPPELGNLAKLEQLYIDSCGAGGEIP-STFAKLRNMQTLWASDNPFTGKIPDFIGNWT-KLKSLRFQGNSFQGP 224 (866)
Q Consensus 147 N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~-~L~~L~L~~N~l~~~ 224 (866)
|++....+..|.++++|++|++++|++....+ ..+..++.|..+...++.+....+..+..++ .++.|++++|+++..
T Consensus 89 n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i 168 (242)
T d1xwdc1 89 NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEI 168 (242)
T ss_dssp TTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEE
T ss_pred ccccccccccccccccccccccchhhhcccccccccccccccccccccccccccccccccccccccceeeeccccccccc
Confidence 67777777788899999999999988865433 2344556666666677777655555555554 677788888887743
Q ss_pred CchhhcCCCCCCEEEccCccCCCCCchhhhcCCCCCceeccCcccccCCCcccCCCCCcCEEeeecCcCcccCCcccCCC
Q 038019 225 IPSSLSKLASLESLQMSDIYNVSSSLDFVMSLKNLTDLSLRNALITGTIPFGIGELQMLQILDLSFNNLTGQIPATLFNI 304 (866)
Q Consensus 225 ~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l 304 (866)
.+.. .+..+++.+. .+.+|.++...+..|..+++|+.|+|++|+|+...+..|.++
T Consensus 169 ~~~~-~~~~~l~~~~-----------------------~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l 224 (242)
T d1xwdc1 169 HNCA-FNGTQLDELN-----------------------LSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENL 224 (242)
T ss_dssp CTTT-TTTCCEEEEE-----------------------CTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTC
T ss_pred cccc-ccchhhhccc-----------------------cccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCC
Confidence 3332 3333433332 233344443323345555555555555555554333344444
Q ss_pred CCCcEEEC
Q 038019 305 DSLEYLFL 312 (866)
Q Consensus 305 ~~L~~L~L 312 (866)
++|+.|++
T Consensus 225 ~~L~~l~~ 232 (242)
T d1xwdc1 225 KKLRARST 232 (242)
T ss_dssp CEEESSSE
T ss_pred cccccCcC
Confidence 44444443
|
| >d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Musk tyrosine kinase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.71 E-value=9e-19 Score=185.68 Aligned_cols=136 Identities=18% Similarity=0.220 Sum_probs=97.6
Q ss_pred ccCCCCCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcC-CC
Q 038019 637 VGIGSKPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGR-AS 715 (866)
Q Consensus 637 ~~~~~~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~-~p 715 (866)
|+.....|++.+.+...++.|||+++.+..+..........||+.|||||++.+..+|.|+||||||||+|||+||. .|
T Consensus 163 HrDlKp~NILld~~~~~Kl~DFGls~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~t~ksDVwS~Gvvl~ell~~~~~p 242 (301)
T d1lufa_ 163 HRDLATRNCLVGENMVVKIADFGLSRNIYSADYYKADGNDAIPIRWMPPESIFYNRYTTESDVWAYGVVLWEIFSYGLQP 242 (301)
T ss_dssp CSCCSGGGEEECGGGCEEECCCSCHHHHTGGGCBC----CCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCT
T ss_pred eeEEcccceEECCCCcEEEccchhheeccCCccccccCCCCcCcCcCCHHHHccCCCChhhhhccchhhHHHHHccCCCC
Confidence 33334458888888899999999998886555445555667899999999999999999999999999999999996 46
Q ss_pred CCCCchhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhcC
Q 038019 716 SDKSLDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLAGD 787 (866)
Q Consensus 716 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~~~ 787 (866)
+......+ +...+ .++... .. +.....++.+++..||+.+|++||||.||+++|+..
T Consensus 243 ~~~~~~~e---~~~~v----~~~~~~-----~~---p~~~~~~~~~li~~cl~~~P~~RPt~~ev~~~L~~i 299 (301)
T d1lufa_ 243 YYGMAHEE---VIYYV----RDGNIL-----AC---PENCPLELYNLMRLCWSKLPADRPSFCSIHRILQRM 299 (301)
T ss_dssp TTTSCHHH---HHHHH----HTTCCC-----CC---CTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHT
T ss_pred CCCCCHHH---HHHHH----HcCCCC-----CC---CccchHHHHHHHHHHcCCChhHCcCHHHHHHHHHHh
Confidence 65443222 22222 222221 11 111223466788899999999999999999999864
|
| >d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Tyrosine-protein kinase Itk/Tsk species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.70 E-value=1.1e-18 Score=181.09 Aligned_cols=135 Identities=21% Similarity=0.207 Sum_probs=84.8
Q ss_pred ccCCCCCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCC-
Q 038019 637 VGIGSKPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRAS- 715 (866)
Q Consensus 637 ~~~~~~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p- 715 (866)
|+.....|++.+++...++.|||+++.+....... ..+..||+.|||||++..+.++.|+|||||||++|||+|++.|
T Consensus 124 HrDlKp~Nill~~~~~~Kl~DFGla~~~~~~~~~~-~~~~~gt~~y~aPE~l~~~~~~~k~DVwS~Gvil~el~t~~~~~ 202 (263)
T d1sm2a_ 124 HRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTS-STGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIP 202 (263)
T ss_dssp CTTCSGGGEEECGGGCEEECSCC-------------------CTTSCCHHHHTTCCCCHHHHHHHHHHHHHHHHTTSCCT
T ss_pred ecccchhheeecCCCCeEecccchheeccCCCcee-ecceecCcccCChHHhcCCCCCchhhhcchHHHHHHHHHCCCCC
Confidence 33334448888888889999999999887654322 3345799999999999999999999999999999999996444
Q ss_pred CCCCchhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhcC
Q 038019 716 SDKSLDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLAGD 787 (866)
Q Consensus 716 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~~~ 787 (866)
+..... ..+.+.+.. +. ...+|.. . ..++.+++..||+.||++||||+||++.|+..
T Consensus 203 ~~~~~~---~~~~~~i~~----~~--~~~~p~~---~---~~~l~~li~~cl~~~p~~Rps~~~il~~L~~i 259 (263)
T d1sm2a_ 203 YENRSN---SEVVEDIST----GF--RLYKPRL---A---STHVYQIMNHCWKERPEDRPAFSRLLRQLAEI 259 (263)
T ss_dssp TCSCCH---HHHHHHHHH----TC--CCCCCTT---S---CHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred CCCCCH---HHHHHHHHh----cC--CCCCccc---c---CHHHHHHHHHHccCCHhHCcCHHHHHHHHHHH
Confidence 443221 122222222 11 1112221 1 23456677799999999999999999999854
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Probab=99.70 E-value=6.7e-16 Score=166.71 Aligned_cols=264 Identities=23% Similarity=0.213 Sum_probs=155.2
Q ss_pred eEEEEEEcccCcCCCCCcccCCCCCCCEEEccCCCCCCCCCccccCCCCcCEEeccCCcCCCCCCccccCCCCCCEeecc
Q 038019 66 HITKLRVYGLNKKGVIPEELVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKELTVLAFG 145 (866)
Q Consensus 66 ~v~~L~l~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls 145 (866)
++++|+|++++++ .+|+. +++|++|+|++|+|+ .+|.. +.+|+.|++++|+++ .+++ + .+.|++|+|+
T Consensus 39 ~l~~LdLs~~~L~-~lp~~---~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~l~~n~l~-~l~~-l--p~~L~~L~L~ 106 (353)
T d1jl5a_ 39 QAHELELNNLGLS-SLPEL---PPHLESLVASCNSLT-ELPEL---PQSLKSLLVDNNNLK-ALSD-L--PPLLEYLGVS 106 (353)
T ss_dssp TCSEEECTTSCCS-CCCSC---CTTCSEEECCSSCCS-SCCCC---CTTCCEEECCSSCCS-CCCS-C--CTTCCEEECC
T ss_pred CCCEEEeCCCCCC-CCCCC---CCCCCEEECCCCCCc-ccccc---hhhhhhhhhhhcccc-hhhh-h--cccccccccc
Confidence 5789999999987 47753 468999999999998 67765 457899999999987 3332 1 1469999999
Q ss_pred CCCCCCCCchhhcCCCCccEEEeecCCCCCCChhhhhcCcCCCEEEecCCCCCCCCcccccCCCCCCeEEccCCCCCCC-
Q 038019 146 TNNFSGALPPELGNLAKLEQLYIDSCGAGGEIPSTFAKLRNMQTLWASDNPFTGKIPDFIGNWTKLKSLRFQGNSFQGP- 224 (866)
Q Consensus 146 ~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~- 224 (866)
+|.++ .+| .++.+++|++|++++|.+..... ....+..+.+..+... ....+..++.++.|++..|.+...
T Consensus 107 ~n~l~-~lp-~~~~l~~L~~L~l~~~~~~~~~~----~~~~l~~l~~~~~~~~--~~~~l~~l~~l~~L~l~~n~~~~~~ 178 (353)
T d1jl5a_ 107 NNQLE-KLP-ELQNSSFLKIIDVDNNSLKKLPD----LPPSLEFIAAGNNQLE--ELPELQNLPFLTAIYADNNSLKKLP 178 (353)
T ss_dssp SSCCS-SCC-CCTTCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCS--SCCCCTTCTTCCEEECCSSCCSSCC
T ss_pred ccccc-ccc-chhhhccceeecccccccccccc----ccccccchhhcccccc--ccccccccccceecccccccccccc
Confidence 99998 445 46889999999999988764332 1234444544444332 123344445555555554443321
Q ss_pred -----------------CchhhcCCCCCCEEEccCccCCCCCchhhhcCCCCCceeccCcccccCCCcccC---------
Q 038019 225 -----------------IPSSLSKLASLESLQMSDIYNVSSSLDFVMSLKNLTDLSLRNALITGTIPFGIG--------- 278 (866)
Q Consensus 225 -----------------~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~--------- 278 (866)
....+..++.|+.+++++|...... ....++..+.+..+.+..... ...
T Consensus 179 ~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~----~~~~~l~~~~~~~~~~~~~~~-~~~~l~~~~~~~ 253 (353)
T d1jl5a_ 179 DLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLP----DLPPSLEALNVRDNYLTDLPE-LPQSLTFLDVSE 253 (353)
T ss_dssp CCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCC----SCCTTCCEEECCSSCCSCCCC-CCTTCCEEECCS
T ss_pred cccccccccccccccccccccccccccccccccccccccccc----ccccccccccccccccccccc-cccccccccccc
Confidence 1123455677778877776543221 123344455555554432110 000
Q ss_pred -------CC-CCcCEEeeecCcCcccCCcccCCCCCCcEEECcCCCCcccCCcccCCCCCEEEeeCCCCCCccCcccccc
Q 038019 279 -------EL-QMLQILDLSFNNLTGQIPATLFNIDSLEYLFLGNNSLSGTLPDQKSENLQKIDLSHNHLSGTFPLWVNSE 350 (866)
Q Consensus 279 -------~l-~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~~p~~~~~~L~~L~Ls~N~l~g~~p~~~~~~ 350 (866)
.+ ......++..+.+.+ ....+++|++|+|++|+++ .+|. ..++|+.|+|++|+|+ .+|..+.+.
T Consensus 254 ~~~~~l~~l~~~~~~~~~~~~~~~~----~~~~~~~L~~L~Ls~N~l~-~lp~-~~~~L~~L~L~~N~L~-~l~~~~~~L 326 (353)
T d1jl5a_ 254 NIFSGLSELPPNLYYLNASSNEIRS----LCDLPPSLEELNVSNNKLI-ELPA-LPPRLERLIASFNHLA-EVPELPQNL 326 (353)
T ss_dssp SCCSEESCCCTTCCEEECCSSCCSE----ECCCCTTCCEEECCSSCCS-CCCC-CCTTCCEEECCSSCCS-CCCCCCTTC
T ss_pred ccccccccccchhcccccccCcccc----ccccCCCCCEEECCCCccC-cccc-ccCCCCEEECCCCcCC-ccccccCCC
Confidence 00 112223333333321 1223466777777777776 3443 2456777777777776 455444333
Q ss_pred ccccccccccc
Q 038019 351 LQMNLAVNNFK 361 (866)
Q Consensus 351 ~~l~l~~N~~~ 361 (866)
..|++++|+++
T Consensus 327 ~~L~L~~N~L~ 337 (353)
T d1jl5a_ 327 KQLHVEYNPLR 337 (353)
T ss_dssp CEEECCSSCCS
T ss_pred CEEECcCCcCC
Confidence 34777777665
|
| >d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Fl cytokine receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.70 E-value=1.9e-18 Score=185.06 Aligned_cols=137 Identities=18% Similarity=0.169 Sum_probs=100.0
Q ss_pred hhccCCCCCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHh-cC
Q 038019 635 VLVGIGSKPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIIS-GR 713 (866)
Q Consensus 635 ~~~~~~~~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~t-g~ 713 (866)
++|+.....|++...+...++.|||+++.+..........+..||++|||||.+.++.++.|+|||||||++|||+| |+
T Consensus 185 IiHRDlKp~Nill~~~~~~Kl~DFGla~~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~~DiwS~Gvil~emlt~g~ 264 (325)
T d1rjba_ 185 CVHRDLAARNVLVTHGKVVKICDFGLARDIMSDSNYVVRGNARLPVKWMAPESLFEGIYTIKSDVWSYGILLWEIFSLGV 264 (325)
T ss_dssp EEETTCSGGGEEEETTTEEEECCCGGGSCGGGCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSC
T ss_pred eeeccCchhccccccCCeEEEeeccccccccCCCceeeeccccCCCccCChHHHcCCCCCcceeccchhHHHHHHHhCCC
Confidence 34444444578887888899999999998876655455555678999999999999999999999999999999998 89
Q ss_pred CCCCCCchhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHh
Q 038019 714 ASSDKSLDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLA 785 (866)
Q Consensus 714 ~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~ 785 (866)
.||....... .+.+ ....+ ..+..+.... ..+.+++..||+.+|++||||+||+++|.
T Consensus 265 ~Pf~~~~~~~--~~~~----~~~~~-----~~~~~p~~~~---~~l~~li~~cl~~dP~~RPt~~ei~~~L~ 322 (325)
T d1rjba_ 265 NPYPGIPVDA--NFYK----LIQNG-----FKMDQPFYAT---EEIYIIMQSCWAFDSRKRPSFPNLTSFLG 322 (325)
T ss_dssp CSSTTCCCSH--HHHH----HHHTT-----CCCCCCTTCC---HHHHHHHHHHTCSSGGGSCCHHHHHHHHH
T ss_pred CCCCCCCHHH--HHHH----HHhcC-----CCCCCCCcCC---HHHHHHHHHHcCCChhHCcCHHHHHHHHh
Confidence 9987543322 1222 22222 1111211122 34556677999999999999999999995
|
| >d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: c-src tyrosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.69 E-value=5.3e-18 Score=177.54 Aligned_cols=140 Identities=19% Similarity=0.179 Sum_probs=92.2
Q ss_pred ccCCCCCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCC
Q 038019 637 VGIGSKPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASS 716 (866)
Q Consensus 637 ~~~~~~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~ 716 (866)
|+.....|++.+.+...++.|||.++.+..+... ......||++|+|||++..+.++.|+|||||||++|||+||+.|+
T Consensus 136 H~DlKp~NIll~~~~~~kl~DfGla~~~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~ksDI~S~Giil~el~t~~~p~ 214 (285)
T d1fmka3 136 HRDLRAANILVGENLVCKVADFGLARLIEDNEYT-ARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVP 214 (285)
T ss_dssp CSCCSGGGEEECGGGCEEECCCCTTC---------------CCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCS
T ss_pred cccccceEEEECCCCcEEEcccchhhhccCCCce-eeccccccccccChHHHhCCCCCcHHhhhcchHHHHHHHhCCCCC
Confidence 3333344788888888999999999988765432 223456899999999999999999999999999999999977665
Q ss_pred CCCchhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhcCcCCC
Q 038019 717 DKSLDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLAGDIEVG 791 (866)
Q Consensus 717 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~~~~~~~ 791 (866)
...... ..+..++.. +. .+..... ...++.+++.+||+.||++||+|.+|+++|+......
T Consensus 215 ~~~~~~--~~~~~~i~~----~~-----~~~~~~~---~~~~l~~li~~cl~~dP~~Rps~~~i~~~L~~~~~~~ 275 (285)
T d1fmka3 215 YPGMVN--REVLDQVER----GY-----RMPCPPE---CPESLHDLMCQCWRKEPEERPTFEYLQAFLEDYFTST 275 (285)
T ss_dssp STTCCH--HHHHHHHHT----TC-----CCCCCTT---SCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTTTSCS
T ss_pred CCCCCH--HHHHHHHHh----cC-----CCCCCcc---cCHHHHHHHHHHcccCHhHCcCHHHHHHHHhhhhcCC
Confidence 443322 123333221 11 1111111 1234556777999999999999999999999765543
|
| >d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Lymphocyte kinase (lck) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.69 E-value=2.1e-18 Score=179.76 Aligned_cols=137 Identities=19% Similarity=0.222 Sum_probs=96.3
Q ss_pred hhccCCCCCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCC
Q 038019 635 VLVGIGSKPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRA 714 (866)
Q Consensus 635 ~~~~~~~~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~ 714 (866)
..|+.....|++..++...++.|||+++.+..+.. ....+..||++|||||++.++.++.|+|||||||++|||+||+.
T Consensus 130 ivHrDiKp~NIll~~~~~~Kl~DFGla~~~~~~~~-~~~~~~~gt~~y~APE~~~~~~~~~~sDvwS~Gvvl~ellt~~~ 208 (272)
T d1qpca_ 130 YIHRDLRAANILVSDTLSCKIADFGLARLIEDNEY-TAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGR 208 (272)
T ss_dssp EECSCCSGGGEEECTTSCEEECCCTTCEECSSSCE-ECCTTCCCCTTTSCHHHHHHCEECHHHHHHHHHHHHHHHHTTTC
T ss_pred cccCccchhheeeecccceeeccccceEEccCCcc-ccccccCCcccccChHHHhCCCCCchhhhhhhHHHHHHHHhCCC
Confidence 33444444588888888899999999998876543 22234578999999999999999999999999999999999766
Q ss_pred CCCCCchhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhc
Q 038019 715 SSDKSLDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLAG 786 (866)
Q Consensus 715 p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~~ 786 (866)
|+...... ..+...+ ..+ ..+..+.... ..+.+++.+||+.+|++||||.||+++|+.
T Consensus 209 ~~~~~~~~--~~~~~~i----~~~-----~~~~~p~~~~---~~l~~li~~cl~~~P~~Rpt~~ei~~~L~~ 266 (272)
T d1qpca_ 209 IPYPGMTN--PEVIQNL----ERG-----YRMVRPDNCP---EELYQLMRLCWKERPEDRPTFDYLRSVLED 266 (272)
T ss_dssp CSSTTCCH--HHHHHHH----HTT-----CCCCCCTTCC---HHHHHHHHHHTCSSGGGSCCHHHHHHHHHH
T ss_pred CCCCCCCH--HHHHHHH----Hhc-----CCCCCcccCh---HHHHHHHHHHcCCCHhHCcCHHHHHHHhhh
Confidence 65432221 1222222 222 1111111112 245567779999999999999999999984
|
| >d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Tyrosine-protein kinase ZAP-70 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.69 E-value=2.1e-18 Score=180.76 Aligned_cols=136 Identities=18% Similarity=0.148 Sum_probs=98.1
Q ss_pred hccCCCCCcccCHHHHHHHhcCCccccccCCCCceeEE-EeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHh-cC
Q 038019 636 LVGIGSKPNIFGYAELRSATKDFNRSNKLGEGGYGPVY-KVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIIS-GR 713 (866)
Q Consensus 636 ~~~~~~~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy-~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~t-g~ 713 (866)
++......|++...+...++.|||+++.++........ ....||+.|||||++.++.++.|+|||||||++|||+| |+
T Consensus 131 iHrDlKp~Nill~~~~~~Kl~DFGla~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~ksDVwS~Gv~l~E~lt~G~ 210 (285)
T d1u59a_ 131 VHRDLAARNVLLVNRHYAKISDFGLSKALGADDSYYTARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQ 210 (285)
T ss_dssp ECCCCSGGGEEEEETTEEEECCCTTCEECTTCSCEECCCCSSCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSC
T ss_pred ecCcCchhheeeccCCceeeccchhhhcccccccccccccccccCccccChHHHhCCCCCccchhhcchHHHHHHHhCCC
Confidence 34334445888888888999999999998765432211 23368999999999999999999999999999999998 99
Q ss_pred CCCCCCchhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhc
Q 038019 714 ASSDKSLDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLAG 786 (866)
Q Consensus 714 ~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~~ 786 (866)
.||......+ +.. .+..+.. +..+.. ....+.+++..||+.+|++||+|.+|++.|+.
T Consensus 211 ~Pf~~~~~~~---~~~----~i~~~~~-----~~~p~~---~~~~l~~li~~cl~~~p~~RPs~~~i~~~L~~ 268 (285)
T d1u59a_ 211 KPYKKMKGPE---VMA----FIEQGKR-----MECPPE---CPPELYALMSDCWIYKWEDRPDFLTVEQRMRA 268 (285)
T ss_dssp CTTTTCCTHH---HHH----HHHTTCC-----CCCCTT---CCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHH
T ss_pred CCCCCCCHHH---HHH----HHHcCCC-----CCCCCc---CCHHHHHHHHHHcCCCHhHCcCHHHHHHHHHH
Confidence 9997654322 222 2222321 111111 12345567779999999999999999999974
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.69 E-value=5.4e-17 Score=166.12 Aligned_cols=214 Identities=18% Similarity=0.124 Sum_probs=144.6
Q ss_pred CEEEccCCCCCCCCCccccCCCCcCEEeccCCcCCCCCCccccCCCCCCEeeccCCCCCCCC-chhhcCCCCccEEEeec
Q 038019 92 TVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKELTVLAFGTNNFSGAL-PPELGNLAKLEQLYIDS 170 (866)
Q Consensus 92 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~L~~ 170 (866)
++++.+++.++ .+|..+. +++++|+|++|+|+...+..|.++++|++|+|++|.+...+ +..|.+++++++|.+..
T Consensus 11 ~~i~c~~~~l~-~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~ 87 (242)
T d1xwdc1 11 RVFLCQESKVT-EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 87 (242)
T ss_dssp SEEEEESCSCS-SCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEEC
T ss_pred CEEEEeCCCCC-CcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccc
Confidence 57888888887 5676543 57899999999998655667888999999999999887644 44677888888888764
Q ss_pred -CCCCCCChhhhhcCcCCCEEEecCCCCCCCCcc-cccCCCCCCeEEccCCCCCCCCchhhcCCCCCCEEEccCccCCCC
Q 038019 171 -CGAGGEIPSTFAKLRNMQTLWASDNPFTGKIPD-FIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLESLQMSDIYNVSS 248 (866)
Q Consensus 171 -n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~-~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~n~~~~~ 248 (866)
|++....+..|.++++|++|++++|.+....+. .+..+..+..+...++.+....+..|..++
T Consensus 88 ~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~--------------- 152 (242)
T d1xwdc1 88 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLS--------------- 152 (242)
T ss_dssp CTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSB---------------
T ss_pred cccccccccccccccccccccccchhhhccccccccccccccccccccccccccccccccccccc---------------
Confidence 567666777778888888888888877643221 222334444444444444433223322221
Q ss_pred CchhhhcCCCCCceeccCcccccCCCcccCCCCCcC-EEeeecCcCcccCCcccCCCCCCcEEECcCCCCcccCCcccCC
Q 038019 249 SLDFVMSLKNLTDLSLRNALITGTIPFGIGELQMLQ-ILDLSFNNLTGQIPATLFNIDSLEYLFLGNNSLSGTLPDQKSE 327 (866)
Q Consensus 249 ~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~-~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~~p~~~~~ 327 (866)
..++.|++++|.++...+..+ ...+++ .+++++|+++...+..|.++++|++|+|++|+++ .+|...+.
T Consensus 153 --------~~l~~L~l~~n~l~~i~~~~~-~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~-~l~~~~~~ 222 (242)
T d1xwdc1 153 --------FESVILWLNKNGIQEIHNCAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPSYGLE 222 (242)
T ss_dssp --------SSCEEEECCSSCCCEECTTTT-TTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCC-CCCSSSCT
T ss_pred --------ccceeeecccccccccccccc-cchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCC-ccCHHHHc
Confidence 256667777777775444434 344544 4467888898665667899999999999999998 55655555
Q ss_pred CCCEEE
Q 038019 328 NLQKID 333 (866)
Q Consensus 328 ~L~~L~ 333 (866)
+|..|.
T Consensus 223 ~l~~L~ 228 (242)
T d1xwdc1 223 NLKKLR 228 (242)
T ss_dssp TCCEEE
T ss_pred CCcccc
Confidence 555554
|
| >d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: EGF receptor tyrosine kinase, Erbb-1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.68 E-value=2.8e-18 Score=183.20 Aligned_cols=138 Identities=16% Similarity=0.163 Sum_probs=96.7
Q ss_pred hccCCCCCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHh-cCC
Q 038019 636 LVGIGSKPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIIS-GRA 714 (866)
Q Consensus 636 ~~~~~~~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~t-g~~ 714 (866)
+|+.....|++...+...++.|||+++.+..+.......+..||+.|||||++.++.++.|+|||||||++|||+| |+.
T Consensus 133 iHrDlKp~NIll~~~~~~kl~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~~~sDvwS~Gvil~el~t~g~~ 212 (317)
T d1xkka_ 133 VHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSK 212 (317)
T ss_dssp CCSCCCGGGEEEEETTEEEECCCSHHHHTTTTCC--------CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCC
T ss_pred ccCcchhhcceeCCCCCeEeeccccceecccccccccccccccCccccChHHHhcCCCChhhhhhhHHHHHHHHHHCCCC
Confidence 3443444588888888889999999999987665555556679999999999999999999999999999999999 788
Q ss_pred CCCCCchhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhcCc
Q 038019 715 SSDKSLDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLAGDI 788 (866)
Q Consensus 715 p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~~~~ 788 (866)
|++.....+ +...+ ..+.. +.... .....+.+++.+||+.+|++||||.||++.|+...
T Consensus 213 p~~~~~~~~---~~~~i----~~~~~-----~~~p~---~~~~~~~~li~~cl~~dP~~RPs~~eil~~l~~~~ 271 (317)
T d1xkka_ 213 PYDGIPASE---ISSIL----EKGER-----LPQPP---ICTIDVYMIMVKCWMIDADSRPKFRELIIEFSKMA 271 (317)
T ss_dssp TTTTSCGGG---HHHHH----HHTCC-----CCCCT---TBCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred CCCCCCHHH---HHHHH----HcCCC-----CCCCc---ccCHHHHHHHHHhCCCChhhCcCHHHHHHHHHHHH
Confidence 887544322 22222 22211 11111 12234566777999999999999999999987543
|
| >d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Abelsone tyrosine kinase (abl) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.68 E-value=3.2e-18 Score=179.78 Aligned_cols=139 Identities=20% Similarity=0.193 Sum_probs=100.3
Q ss_pred hhccCCCCCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCC
Q 038019 635 VLVGIGSKPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRA 714 (866)
Q Consensus 635 ~~~~~~~~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~ 714 (866)
++|+.....|++.+++...++.|||.++.+..... ....+..||+.|||||++.++.++.|+|||||||++|||+||+.
T Consensus 136 iiHrDlKp~NILl~~~~~~Kl~DFG~a~~~~~~~~-~~~~~~~g~~~y~aPE~~~~~~~~~k~DiwS~Gv~l~ell~~~~ 214 (287)
T d1opja_ 136 FIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTY-TAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGM 214 (287)
T ss_dssp CCCSCCSGGGEEECGGGCEEECCCCCTTTCCSSSS-EEETTEEECGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTSC
T ss_pred cccCccccCeEEECCCCcEEEccccceeecCCCCc-eeeccccccccccChHHHcCCCCCchhhhhhHHHHHHHHHhCCC
Confidence 34444444588888888999999999998876543 45566778999999999999999999999999999999999877
Q ss_pred CCCCCchhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhcCc
Q 038019 715 SSDKSLDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLAGDI 788 (866)
Q Consensus 715 p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~~~~ 788 (866)
|+....... .+.+ ....+. .+...... ..++.+++..||+.||++||||.||++.|+...
T Consensus 215 p~~~~~~~~--~~~~----~i~~~~-----~~~~~~~~---~~~l~~li~~cl~~dP~~Rps~~ei~~~L~~~~ 274 (287)
T d1opja_ 215 SPYPGIDLS--QVYE----LLEKDY-----RMERPEGC---PEKVYELMRACWQWNPSDRPSFAEIHQAFETMF 274 (287)
T ss_dssp CSSTTCCHH--HHHH----HHHTTC-----CCCCCTTC---CHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHTT
T ss_pred CCCCcchHH--HHHH----HHhcCC-----CCCCCccc---hHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHH
Confidence 765332221 1222 222221 11121111 234566777999999999999999999998643
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.68 E-value=1.5e-17 Score=163.90 Aligned_cols=155 Identities=20% Similarity=0.292 Sum_probs=119.4
Q ss_pred EEEEEEcccCcCCCCCcccCCCCCCCEEEccCCCCCCC-CCccccCCCCcCEEeccCCcCCCCCCccccCCCCCCEeecc
Q 038019 67 ITKLRVYGLNKKGVIPEELVTLQYLTVLKIDQNFFTGP-LPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKELTVLAFG 145 (866)
Q Consensus 67 v~~L~l~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls 145 (866)
.+.++.++++++ .+|..+. +++++|+|++|+|++. .+..|.++++|++|+|++|.+....+..|..+++|++|+|+
T Consensus 10 ~~~v~Cs~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls 86 (192)
T d1w8aa_ 10 GTTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG 86 (192)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCEEEEeCCCcC-ccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeec
Confidence 346777888887 5676664 6889999999999764 45667889999999999999998888899999999999999
Q ss_pred CCCCCCCCchhhcCCCCccEEEeecCCCCCCChhhhhcCcCCCEEEecCCCCCCCCcc-cccCCCCCCeEEccCCCCCCC
Q 038019 146 TNNFSGALPPELGNLAKLEQLYIDSCGAGGEIPSTFAKLRNMQTLWASDNPFTGKIPD-FIGNWTKLKSLRFQGNSFQGP 224 (866)
Q Consensus 146 ~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~-~l~~l~~L~~L~L~~N~l~~~ 224 (866)
+|+++...+..|.++++|++|+|++|++++..++.|..+++|++|+|++|.+...... ++. ..++.+.+..+.++..
T Consensus 87 ~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~~~--~~l~~~~l~~~~~~c~ 164 (192)
T d1w8aa_ 87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFA--EWLRKKSLNGGAARCG 164 (192)
T ss_dssp SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHH--HHHHHHCCSGGGCBBC
T ss_pred cccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccccchHHHh--hhhhhhcccCCCeEeC
Confidence 9999887788888899999999999998888888888888888888888887643321 111 2244455555555544
Q ss_pred Cc
Q 038019 225 IP 226 (866)
Q Consensus 225 ~p 226 (866)
.|
T Consensus 165 ~p 166 (192)
T d1w8aa_ 165 AP 166 (192)
T ss_dssp SS
T ss_pred CC
Confidence 44
|
| >d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Tyrosine-protein kinase SYK species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.67 E-value=4.5e-18 Score=177.60 Aligned_cols=136 Identities=19% Similarity=0.151 Sum_probs=95.6
Q ss_pred hccCCCCCcccCHHHHHHHhcCCccccccCCCCc-eeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHh-cC
Q 038019 636 LVGIGSKPNIFGYAELRSATKDFNRSNKLGEGGY-GPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIIS-GR 713 (866)
Q Consensus 636 ~~~~~~~~~~~~~~~~~~~~~dF~~~~~lg~g~~-g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~t-g~ 713 (866)
+|+.....|++...+...++.|||+++.+..... ........||++|||||.+..+.++.|+|||||||++|||+| |+
T Consensus 129 iHrDlKp~Nill~~~~~~kl~DFGla~~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~~~sDiwS~Gv~l~ellt~g~ 208 (277)
T d1xbba_ 129 VHRDLAARNVLLVTQHYAKISDFGLSKALRADENYYKAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQ 208 (277)
T ss_dssp ECSCCSGGGEEEEETTEEEECCCTTCEECCTTCSEEEC----CCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTC
T ss_pred ccCCCcchhhcccccCcccccchhhhhhccccccccccccccCCCceecCchhhcCCCCCchhhhccchhhhhHHhhCCC
Confidence 3443444578888888889999999998765432 222234578999999999999999999999999999999998 89
Q ss_pred CCCCCCchhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhc
Q 038019 714 ASSDKSLDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLAG 786 (866)
Q Consensus 714 ~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~~ 786 (866)
.|+......+ +.. .+..+.. +..+.. ....+.+++.+||+.||++||||++|+++|+.
T Consensus 209 ~Pf~~~~~~~---~~~----~i~~~~~-----~~~p~~---~~~~~~~li~~cl~~dp~~RPs~~~i~~~L~~ 266 (277)
T d1xbba_ 209 KPYRGMKGSE---VTA----MLEKGER-----MGCPAG---CPREMYDLMNLCWTYDVENRPGFAAVELRLRN 266 (277)
T ss_dssp CSSTTCCHHH---HHH----HHHTTCC-----CCCCTT---CCHHHHHHHHHHTCSSTTTSCCHHHHHHHHHH
T ss_pred CCCCCCCHHH---HHH----HHHcCCC-----CCCCcc---cCHHHHHHHHHHcCCCHhHCcCHHHHHHHhhC
Confidence 9997544322 222 2222211 111111 12345567779999999999999999999874
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.67 E-value=2.4e-16 Score=157.37 Aligned_cols=147 Identities=22% Similarity=0.297 Sum_probs=86.1
Q ss_pred CCCCCCEEEccCCCCCCCCCccccCCCCcCEEeccCCcCCCCCCccccCCCCCCEeeccCCCCCCCCchhhcCCCCccEE
Q 038019 87 TLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKELTVLAFGTNNFSGALPPELGNLAKLEQL 166 (866)
Q Consensus 87 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 166 (866)
.+..|+.|++++|.++.. + .+..+++|++|+|++|+|++. + .++++++|++|++++|++++ ++ .+..+++|+.|
T Consensus 44 ~L~~L~~L~l~~~~i~~l-~-~l~~l~~L~~L~L~~n~i~~l-~-~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L 117 (210)
T d1h6ta2 44 ELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDI-K-PLANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSL 117 (210)
T ss_dssp HHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEE
T ss_pred HhcCccEEECcCCCCCCc-h-hHhhCCCCCEEeCCCccccCc-c-ccccCccccccccccccccc-cc-ccccccccccc
Confidence 355667777777766642 2 256677777777777776643 2 35666777777777776663 22 46666666666
Q ss_pred EeecCCCCCCChhhhhcCcCCCEEEecCCCCCCCCcccccCCCCCCeEEccCCCCCCCCchhhcCCCCCCEEEccCccC
Q 038019 167 YIDSCGAGGEIPSTFAKLRNMQTLWASDNPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLESLQMSDIYN 245 (866)
Q Consensus 167 ~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~n~~ 245 (866)
++++|.+... ..+..+++|+.+++++|.+++. ..+..+++|+.+++++|++++. + .+.++++|+.|++++|.+
T Consensus 118 ~l~~~~~~~~--~~l~~l~~l~~l~~~~n~l~~~--~~~~~l~~L~~l~l~~n~l~~i-~-~l~~l~~L~~L~Ls~N~i 190 (210)
T d1h6ta2 118 SLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDI-V-PLAGLTKLQNLYLSKNHI 190 (210)
T ss_dssp ECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCC
T ss_pred cccccccccc--cccccccccccccccccccccc--cccccccccccccccccccccc-c-cccCCCCCCEEECCCCCC
Confidence 6666665432 3456666666666666666532 2345566666666666666532 2 244555555554444433
|
| >d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Vascular endothelial growth factor receptor 2 (kdr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.66 E-value=7.1e-18 Score=178.62 Aligned_cols=140 Identities=19% Similarity=0.129 Sum_probs=93.0
Q ss_pred hhccCCCCCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcC-
Q 038019 635 VLVGIGSKPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGR- 713 (866)
Q Consensus 635 ~~~~~~~~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~- 713 (866)
++|+.....|++..++...++.|||+++.+.............||+.|||||.+.++.++.|+|||||||++|||+||.
T Consensus 155 ivHrDlKp~NILl~~~~~~Kl~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~~~sDiwS~Gvil~ellt~~~ 234 (299)
T d1ywna1 155 CIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGA 234 (299)
T ss_dssp CCCSCCCGGGEEECGGGCEEECC------CCSCTTSCCTTSCCCGGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSC
T ss_pred CcCCcCCccceeECCCCcEEEccCcchhhccccccccccCceeeCccccchhHhhcCCCCcccceeehHHHHHHHHhCCC
Confidence 3344444458888888899999999998876544333333457999999999999999999999999999999999975
Q ss_pred CCCCCCchhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhcCc
Q 038019 714 ASSDKSLDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLAGDI 788 (866)
Q Consensus 714 ~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~~~~ 788 (866)
.|+......+ ++.....++.. +...+.. ..++.+++.+||+.||++||||.||+++|+..+
T Consensus 235 ~p~~~~~~~~------~~~~~~~~~~~-----~~~~~~~---~~~l~~li~~cl~~dP~~Rpt~~eil~~L~~il 295 (299)
T d1ywna1 235 SPYPGVKIDE------EFCRRLKEGTR-----MRAPDYT---TPEMYQTMLDCWHGEPSQRPTFSELVEHLGNLL 295 (299)
T ss_dssp CSSTTCCCSH------HHHHHHHHTCC-----CCCCTTC---CHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred CCCCCCCHHH------HHHHHHhcCCC-----CCCCccC---CHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHH
Confidence 4665432211 12222222221 2221111 234566777999999999999999999998643
|
| >d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Type I TGF-beta receptor R4 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.66 E-value=5.2e-18 Score=179.68 Aligned_cols=150 Identities=13% Similarity=0.085 Sum_probs=101.5
Q ss_pred hhhccCCCCCcccCHHHHHHHhcCCccccccCCCCcee--EEEeecCCCCccCceeeecC------CCCchhHHHHHHHH
Q 038019 634 EVLVGIGSKPNIFGYAELRSATKDFNRSNKLGEGGYGP--VYKVTANSYGYLAPEYAMRG------HLTEKADVFSFGVV 705 (866)
Q Consensus 634 ~~~~~~~~~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~--vy~~~~gt~gY~aPE~~~~~------~~t~ksDVySfGvv 705 (866)
.++|+.....|++...+...++.|||+++.+....... ......||++|||||++... .++.|+|||||||+
T Consensus 128 ~IvHrDlKp~NILl~~~~~~Kl~DFGl~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~k~Di~S~Gvv 207 (303)
T d1vjya_ 128 AIAHRDLKSKNILVKKNGTCCIADLGLAVRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLV 207 (303)
T ss_dssp EEECSCCCGGGEEECTTSCEEECCCTTCEEEETTTTEECC----CCSCGGGCCHHHHTTCSCTTCHHHHHHHHHHHHHHH
T ss_pred CeeccccCccceEEcCCCCeEEEecCccccccCCCcceeccccceecccCcCChhhccccccccCCCcCcchhhhhhHHH
Confidence 34444444558888888899999999999887654322 23456899999999998643 37889999999999
Q ss_pred HHHHHhcCCCCCCCchhh----hh----cHHHHHHHHhhcCCcccccCCcccc-c-CHHHHHHHHHHHHHccCCCCCCCC
Q 038019 706 ALEIISGRASSDKSLDME----KI----YLLEWAWNLHENNQSFGLVDPTLTE-F-NDKEALRVIGVALLCTQTSPMMRP 775 (866)
Q Consensus 706 LlEl~tg~~p~~~~~~~~----~~----~l~~~~~~~~~~~~~~~~~d~~l~~-~-~~~~~~~~~~la~~C~~~~p~~RP 775 (866)
||||+||+.|+....... .. .-.+....... .+.++|.+.. . ..+....+.+++.+||+.||++||
T Consensus 208 l~el~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~p~~~~~~~~~~~~~~l~~li~~cl~~dp~~Rp 283 (303)
T d1vjya_ 208 FWEIARRCSIGGIHEDYQLPYYDLVPSDPSVEEMRKVVC----EQKLRPNIPNRWQSCEALRVMAKIMRECWYANGAARL 283 (303)
T ss_dssp HHHHHHTBCBTTBCCCCCCTTTTTSCSSCCHHHHHHHHT----TSCCCCCCCGGGGGCHHHHHHHHHHHTTCCSSGGGSC
T ss_pred HHHHhhCCCCCCcccccccchhhcccccchHHHHHHHHh----ccccCCCCCcccCChHHHHHHHHHHHHHcccCHhHCc
Confidence 999999988764322110 00 01112222221 2234455422 1 234556677899999999999999
Q ss_pred CHHHHHHHHhcC
Q 038019 776 PMSRVVAMLAGD 787 (866)
Q Consensus 776 sm~~V~~~L~~~ 787 (866)
||.||+++|+..
T Consensus 284 s~~ei~~~L~~i 295 (303)
T d1vjya_ 284 TALRIKKTLSQL 295 (303)
T ss_dssp CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 999999999853
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.66 E-value=5.6e-16 Score=153.32 Aligned_cols=160 Identities=24% Similarity=0.307 Sum_probs=91.1
Q ss_pred EcccCcCCCCCcccCCCCCCCEEEccCCCCCCCCCccccCCCCcCEEeccCCcCCCCCCccccCCCCCCEeeccCCCCCC
Q 038019 72 VYGLNKKGVIPEELVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKELTVLAFGTNNFSG 151 (866)
Q Consensus 72 l~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 151 (866)
+..+++++.++ ...+.+|++|++++|.++. +. .+..+++|++|+|++|++++..| ++++++|++|++++|.+..
T Consensus 25 l~~~~~~~~~~--~~~l~~l~~L~l~~~~i~~-l~-~l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~~~ 98 (199)
T d2omxa2 25 LGKTNVTDTVS--QTDLDQVTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIAD 98 (199)
T ss_dssp TTCSSTTSEEC--HHHHTTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC
T ss_pred hCCCCCCCccC--HHHhcCCCEEECCCCCCCC-cc-ccccCCCcCcCccccccccCccc--ccCCccccccccccccccc
Confidence 33444444332 2345666677777776653 22 35666677777777776664322 6666677777776666653
Q ss_pred CCchhhcCCCCccEEEeecCCCCCCChhhhhcCcCCCEEEecCCCCCCCCcccccCCCCCCeEEccCCCCCCCCchhhcC
Q 038019 152 ALPPELGNLAKLEQLYIDSCGAGGEIPSTFAKLRNMQTLWASDNPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSK 231 (866)
Q Consensus 152 ~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~ 231 (866)
. + .+.++++|+.|++++|.+... ..+..+++|+.|++++|++.. + +.+..+++|+.|++.+|++++. + .+.+
T Consensus 99 ~-~-~l~~l~~L~~L~l~~~~~~~~--~~~~~l~~L~~L~l~~n~l~~-~-~~l~~~~~L~~L~l~~n~l~~l-~-~l~~ 170 (199)
T d2omxa2 99 I-T-PLANLTNLTGLTLFNNQITDI--DPLKNLTNLNRLELSSNTISD-I-SALSGLTSLQQLNFSSNQVTDL-K-PLAN 170 (199)
T ss_dssp C-G-GGTTCTTCSEEECCSSCCCCC--GGGTTCTTCSEEECCSSCCCC-C-GGGTTCTTCSEEECCSSCCCCC-G-GGTT
T ss_pred c-c-ccccccccccccccccccccc--cccchhhhhHHhhhhhhhhcc-c-ccccccccccccccccccccCC-c-cccC
Confidence 2 2 366666666666666665543 235566666666666666652 2 2355566666666666666532 1 2555
Q ss_pred CCCCCEEEccCccC
Q 038019 232 LASLESLQMSDIYN 245 (866)
Q Consensus 232 l~~L~~L~l~~n~~ 245 (866)
+++|+.|++++|.+
T Consensus 171 l~~L~~L~ls~N~i 184 (199)
T d2omxa2 171 LTTLERLDISSNKV 184 (199)
T ss_dssp CTTCCEEECCSSCC
T ss_pred CCCCCEEECCCCCC
Confidence 55555555555444
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.66 E-value=5.9e-16 Score=154.54 Aligned_cols=164 Identities=24% Similarity=0.319 Sum_probs=140.3
Q ss_pred eeEEEEEEcccCcCCCCCcccCCCCCCCEEEccCCCCCCCCCccccCCCCcCEEeccCCcCCCCCCccccCCCCCCEeec
Q 038019 65 CHITKLRVYGLNKKGVIPEELVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKELTVLAF 144 (866)
Q Consensus 65 ~~v~~L~l~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 144 (866)
..++.|++.++.++... .+..+++|++|+|++|+|++. + .++++++|++|++++|++++ +| .+.++++|+.|++
T Consensus 46 ~~L~~L~l~~~~i~~l~--~l~~l~~L~~L~L~~n~i~~l-~-~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~l 119 (210)
T d1h6ta2 46 NSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDI-K-PLANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSL 119 (210)
T ss_dssp HTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEEC
T ss_pred cCccEEECcCCCCCCch--hHhhCCCCCEEeCCCccccCc-c-ccccCccccccccccccccc-cc-ccccccccccccc
Confidence 36889999999887643 388899999999999999864 4 37899999999999999985 44 5899999999999
Q ss_pred cCCCCCCCCchhhcCCCCccEEEeecCCCCCCChhhhhcCcCCCEEEecCCCCCCCCcccccCCCCCCeEEccCCCCCCC
Q 038019 145 GTNNFSGALPPELGNLAKLEQLYIDSCGAGGEIPSTFAKLRNMQTLWASDNPFTGKIPDFIGNWTKLKSLRFQGNSFQGP 224 (866)
Q Consensus 145 s~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ 224 (866)
++|.+.. ...+..+++|+.++++.|.++.. ..+..+++|+++++++|++++. + .+.++++|+.|+|++|+++.
T Consensus 120 ~~~~~~~--~~~l~~l~~l~~l~~~~n~l~~~--~~~~~l~~L~~l~l~~n~l~~i-~-~l~~l~~L~~L~Ls~N~i~~- 192 (210)
T d1h6ta2 120 EHNGISD--INGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDI-V-PLAGLTKLQNLYLSKNHISD- 192 (210)
T ss_dssp TTSCCCC--CGGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCB-
T ss_pred ccccccc--ccccccccccccccccccccccc--cccccccccccccccccccccc-c-cccCCCCCCEEECCCCCCCC-
Confidence 9999864 34688999999999999998753 4578899999999999999864 3 38899999999999999984
Q ss_pred CchhhcCCCCCCEEEccC
Q 038019 225 IPSSLSKLASLESLQMSD 242 (866)
Q Consensus 225 ~p~~~~~l~~L~~L~l~~ 242 (866)
++ .|.++++|+.|+|++
T Consensus 193 l~-~l~~l~~L~~L~Ls~ 209 (210)
T d1h6ta2 193 LR-ALAGLKNLDVLELFS 209 (210)
T ss_dssp CG-GGTTCTTCSEEEEEE
T ss_pred Ch-hhcCCCCCCEEEccC
Confidence 44 589999999999864
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Probab=99.65 E-value=1.2e-14 Score=156.75 Aligned_cols=242 Identities=20% Similarity=0.244 Sum_probs=172.0
Q ss_pred CCCCEEEccCCCCCCCCCccccCCCCcCEEeccCCcCCCCCCccccCCCCCCEeeccCCCCCCCCchhhcCCCCccEEEe
Q 038019 89 QYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKELTVLAFGTNNFSGALPPELGNLAKLEQLYI 168 (866)
Q Consensus 89 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 168 (866)
.+|++|||++|.++ .+|+. +++|++|+|++|+|+ .+|+.+ .+|+.|++++|+++. ++. + .+.|++|++
T Consensus 38 ~~l~~LdLs~~~L~-~lp~~---~~~L~~L~Ls~N~l~-~lp~~~---~~L~~L~l~~n~l~~-l~~-l--p~~L~~L~L 105 (353)
T d1jl5a_ 38 RQAHELELNNLGLS-SLPEL---PPHLESLVASCNSLT-ELPELP---QSLKSLLVDNNNLKA-LSD-L--PPLLEYLGV 105 (353)
T ss_dssp HTCSEEECTTSCCS-CCCSC---CTTCSEEECCSSCCS-SCCCCC---TTCCEEECCSSCCSC-CCS-C--CTTCCEEEC
T ss_pred cCCCEEEeCCCCCC-CCCCC---CCCCCEEECCCCCCc-ccccch---hhhhhhhhhhcccch-hhh-h--ccccccccc
Confidence 36899999999998 57753 578999999999998 678665 578999999999873 332 1 246999999
Q ss_pred ecCCCCCCChhhhhcCcCCCEEEecCCCCCCCCcccccCCCCCCeEEccCCCCCCCCchhhcCCCCCCEEEccCccCCCC
Q 038019 169 DSCGAGGEIPSTFAKLRNMQTLWASDNPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLESLQMSDIYNVSS 248 (866)
Q Consensus 169 ~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~n~~~~~ 248 (866)
++|.+.. +|. ++.+++|++|++++|.+... +.. ...+..+.+..+.... ...+..++.++.|++..|.....
T Consensus 106 ~~n~l~~-lp~-~~~l~~L~~L~l~~~~~~~~-~~~---~~~l~~l~~~~~~~~~--~~~l~~l~~l~~L~l~~n~~~~~ 177 (353)
T d1jl5a_ 106 SNNQLEK-LPE-LQNSSFLKIIDVDNNSLKKL-PDL---PPSLEFIAAGNNQLEE--LPELQNLPFLTAIYADNNSLKKL 177 (353)
T ss_dssp CSSCCSS-CCC-CTTCTTCCEEECCSSCCSCC-CCC---CTTCCEEECCSSCCSS--CCCCTTCTTCCEEECCSSCCSSC
T ss_pred ccccccc-ccc-hhhhccceeecccccccccc-ccc---cccccchhhccccccc--cccccccccceeccccccccccc
Confidence 9999875 453 67899999999999988743 332 3567788887766543 34577788899999887654321
Q ss_pred ------------------CchhhhcCCCCCceeccCcccccCCCcccCCCCCcCEEeeecCcCcccCCcccCCCCCCcEE
Q 038019 249 ------------------SLDFVMSLKNLTDLSLRNALITGTIPFGIGELQMLQILDLSFNNLTGQIPATLFNIDSLEYL 310 (866)
Q Consensus 249 ------------------~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 310 (866)
....+..++.|+.+++++|.... ++ ....++..+.+..+.+... +.. .+.+..+
T Consensus 178 ~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~-~~---~~~~~l~~~~~~~~~~~~~-~~~---~~~l~~~ 249 (353)
T d1jl5a_ 178 PDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKT-LP---DLPPSLEALNVRDNYLTDL-PEL---PQSLTFL 249 (353)
T ss_dssp CCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSS-CC---SCCTTCCEEECCSSCCSCC-CCC---CTTCCEE
T ss_pred ccccccccccccccccccccccccccccccccccccccccc-cc---ccccccccccccccccccc-ccc---ccccccc
Confidence 11234567889999999987663 33 2345677888888877632 211 2233333
Q ss_pred E--------------------CcCCCCcccCCcccCCCCCEEEeeCCCCCCccCccccccccccccccccc
Q 038019 311 F--------------------LGNNSLSGTLPDQKSENLQKIDLSHNHLSGTFPLWVNSELQMNLAVNNFK 361 (866)
Q Consensus 311 ~--------------------L~~N~l~g~~p~~~~~~L~~L~Ls~N~l~g~~p~~~~~~~~l~l~~N~~~ 361 (866)
+ +..|.+.+.. ...++|++|+|++|+++ .+|..+.....|+|++|.++
T Consensus 250 ~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~--~~~~~L~~L~Ls~N~l~-~lp~~~~~L~~L~L~~N~L~ 317 (353)
T d1jl5a_ 250 DVSENIFSGLSELPPNLYYLNASSNEIRSLC--DLPPSLEELNVSNNKLI-ELPALPPRLERLIASFNHLA 317 (353)
T ss_dssp ECCSSCCSEESCCCTTCCEEECCSSCCSEEC--CCCTTCCEEECCSSCCS-CCCCCCTTCCEEECCSSCCS
T ss_pred ccccccccccccccchhcccccccCcccccc--ccCCCCCEEECCCCccC-ccccccCCCCEEECCCCcCC
Confidence 4 4444443221 12468999999999998 57877666566999999886
|
| >d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Bruton's tyrosine kinase (Btk) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.65 E-value=3.2e-17 Score=169.08 Aligned_cols=130 Identities=19% Similarity=0.268 Sum_probs=95.1
Q ss_pred CCCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHh-cCCCCCCC
Q 038019 641 SKPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIIS-GRASSDKS 719 (866)
Q Consensus 641 ~~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~t-g~~p~~~~ 719 (866)
...|++.+++...++.|||.++.+.+..+.. ..+..||+.|||||.+..+.++.|+|||||||++|||+| |+.|+...
T Consensus 127 k~~Nill~~~~~~kl~DfG~a~~~~~~~~~~-~~~~~~t~~y~aPE~~~~~~~~~ksDiwS~G~~l~el~t~g~~Pf~~~ 205 (258)
T d1k2pa_ 127 AARNCLVNDQGVVKVSDFGLSRYVLDDEYTS-SVGSKFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMPYERF 205 (258)
T ss_dssp SGGGEEECTTCCEEECCCSSCCBCSSSSCCC-CCCSCCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTS
T ss_pred cceeEEEcCCCcEEECcchhheeccCCCcee-ecccCCCCCcCCcHHhcCCCCCcceeecccchhhHhHHhcCCCCCCCC
Confidence 3347777777788899999999887765432 334568999999999999999999999999999999998 89998765
Q ss_pred chhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhc
Q 038019 720 LDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLAG 786 (866)
Q Consensus 720 ~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~~ 786 (866)
...+ +.. .+.++. ....|. ... ..+.+++..||+.||++||||.||++.|..
T Consensus 206 ~~~~---~~~----~i~~~~--~~~~p~---~~~---~~l~~li~~cl~~dP~~RPt~~eil~~L~d 257 (258)
T d1k2pa_ 206 TNSE---TAE----HIAQGL--RLYRPH---LAS---EKVYTIMYSCWHEKADERPTFKILLSNILD 257 (258)
T ss_dssp CHHH---HHH----HHHTTC--CCCCCT---TCC---HHHHHHHHHTTCSSGGGSCCHHHHHHHHHC
T ss_pred CHHH---HHH----HHHhCC--CCCCcc---ccc---HHHHHHHHHHccCCHhHCcCHHHHHHHhhC
Confidence 4332 221 122221 111121 112 345566779999999999999999999863
|
| >d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Insulin-like growth factor 1 receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.65 E-value=1e-17 Score=177.85 Aligned_cols=139 Identities=19% Similarity=0.195 Sum_probs=97.5
Q ss_pred hccCCCCCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcC-C
Q 038019 636 LVGIGSKPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGR-A 714 (866)
Q Consensus 636 ~~~~~~~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~-~ 714 (866)
.++.....|++.+++...++.|||+++.+.............||+.|||||.+.++.++.|+|||||||++|||+||+ .
T Consensus 155 vHrDlk~~NiLld~~~~~Kl~DFGla~~~~~~~~~~~~~~~~~t~~y~aPe~l~~~~~~~~~Dv~S~G~il~El~t~~~~ 234 (308)
T d1p4oa_ 155 VHRDLAARNCMVAEDFTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQ 234 (308)
T ss_dssp BCSCCSGGGEEECTTCCEEECCTTCCCGGGGGGCEEGGGSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHHTSCC
T ss_pred eeceEcCCceeecCCceEEEeecccceeccCCcceeeccceecccccCCHHHHccCCCCcccccccHHHHHHHHHhCCCC
Confidence 333344458888888889999999999887654322222235789999999999999999999999999999999986 5
Q ss_pred CCCCCchhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhcCcC
Q 038019 715 SSDKSLDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLAGDIE 789 (866)
Q Consensus 715 p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~~~~~ 789 (866)
|+...... ++... ..++.... . +......+.+++.+||+.+|++||||.||+++|+..++
T Consensus 235 p~~~~~~~------~~~~~-i~~~~~~~-----~---p~~~~~~l~~li~~cl~~~P~~RPs~~~il~~L~~~~~ 294 (308)
T d1p4oa_ 235 PYQGLSNE------QVLRF-VMEGGLLD-----K---PDNCPDMLFELMRMCWQYNPKMRPSFLEIISSIKEEME 294 (308)
T ss_dssp TTTTSCHH------HHHHH-HHTTCCCC-----C---CTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHGGGSC
T ss_pred CCCCCCHH------HHHHH-HHhCCCCC-----C---cccchHHHHHHHHHHcCCChhHCcCHHHHHHHHHHhcC
Confidence 55433222 22222 12222111 1 11112346667789999999999999999999986543
|
| >d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Serine/threonine-protein kinase Nek2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.64 E-value=6.6e-18 Score=175.46 Aligned_cols=131 Identities=18% Similarity=0.151 Sum_probs=86.2
Q ss_pred hhccCCCCCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCC
Q 038019 635 VLVGIGSKPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRA 714 (866)
Q Consensus 635 ~~~~~~~~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~ 714 (866)
++|+.....|++...+...++.|||.++.+..+. ...+...||++|||||.+.+..++.|+|||||||++|||+||+.
T Consensus 135 IiHrDiKp~NIll~~~~~vkl~DFG~a~~~~~~~--~~~~~~~gt~~Y~APE~l~~~~~~~~~DIwSlGvilyel~tg~~ 212 (269)
T d2java1 135 VLHRDLKPANVFLDGKQNVKLGDFGLARILNHDT--SFAKAFVGTPYYMSPEQMNRMSYNEKSDIWSLGCLLYELCALMP 212 (269)
T ss_dssp -----CCGGGEEECTTSCEEECCHHHHHHC-------------CCCSCCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSC
T ss_pred EEeCcCchhhcCcCCCCcEEEeeccceeecccCC--CccccCCCCcccCCHHHHcCCCCChHHHHHhhCHHHHHHhhCCC
Confidence 3444444458888888888999999999887543 23455689999999999999999999999999999999999999
Q ss_pred CCCCCchhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 715 SSDKSLDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 715 p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
|+......+ +... +.++... .+.....++ +.++..+|++.||++|||+.|+++
T Consensus 213 Pf~~~~~~~---~~~~----i~~~~~~-----~~~~~~s~~---l~~li~~~L~~dp~~Rps~~ell~ 265 (269)
T d2java1 213 PFTAFSQKE---LAGK----IREGKFR-----RIPYRYSDE---LNEIITRMLNLKDYHRPSVEEILE 265 (269)
T ss_dssp SCCCSSHHH---HHHH----HHHTCCC-----CCCTTSCHH---HHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred CCCCCCHHH---HHHH----HHcCCCC-----CCCcccCHH---HHHHHHHHcCCChhHCcCHHHHHh
Confidence 997543221 2221 2222221 111111223 445666999999999999999864
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.64 E-value=1.9e-16 Score=155.88 Aligned_cols=173 Identities=18% Similarity=0.157 Sum_probs=119.7
Q ss_pred CEEEecCCCCCCCCcccccCCCCCCeEEccCCCCCCCC-chhhcCCCCCCEEEccCccCCCCCchhhhcCCCCCceeccC
Q 038019 188 QTLWASDNPFTGKIPDFIGNWTKLKSLRFQGNSFQGPI-PSSLSKLASLESLQMSDIYNVSSSLDFVMSLKNLTDLSLRN 266 (866)
Q Consensus 188 ~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~-p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~ 266 (866)
+.++.++++++ .+|..+. +++++|+|++|+|++.+ +..|.++++|+.|+|++|.+.......+..+++|++|+|++
T Consensus 11 ~~v~Cs~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~ 87 (192)
T d1w8aa_ 11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEEeCCCcC-ccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeecc
Confidence 45666666666 4555443 46677777777776533 45566677777777777666666666667777777788888
Q ss_pred cccccCCCcccCCCCCcCEEeeecCcCcccCCcccCCCCCCcEEECcCCCCcccCCccc-CCCCCEEEeeCCCCCCccCc
Q 038019 267 ALITGTIPFGIGELQMLQILDLSFNNLTGQIPATLFNIDSLEYLFLGNNSLSGTLPDQK-SENLQKIDLSHNHLSGTFPL 345 (866)
Q Consensus 267 n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~~p~~~-~~~L~~L~Ls~N~l~g~~p~ 345 (866)
|+++...+..|..+++|+.|+|++|+|++..+..|..+++|++|+|++|.+........ ...++.+.+..|.+++..|.
T Consensus 88 N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~~~~~l~~~~l~~~~~~c~~p~ 167 (192)
T d1w8aa_ 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAPS 167 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHHHHHHHCCSGGGCBBCSST
T ss_pred ccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccccchHHHhhhhhhhcccCCCeEeCCCh
Confidence 88887777788888888888888888888778888888888888888888875433222 23355566777777777776
Q ss_pred cccccccccccccccccc
Q 038019 346 WVNSELQMNLAVNNFKFD 363 (866)
Q Consensus 346 ~~~~~~~l~l~~N~~~~~ 363 (866)
.+.....++|+.|.|.+.
T Consensus 168 ~l~~~~l~~L~~n~l~C~ 185 (192)
T d1w8aa_ 168 KVRDVQIKDLPHSEFKCS 185 (192)
T ss_dssp TTTTSBGGGSCTTTCCCC
T ss_pred hhcCCEeeecCHhhCcCC
Confidence 654433466666666554
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.64 E-value=1.4e-15 Score=150.49 Aligned_cols=160 Identities=30% Similarity=0.378 Sum_probs=136.1
Q ss_pred eeEEEEEEcccCcCCCCCcccCCCCCCCEEEccCCCCCCCCCccccCCCCcCEEeccCCcCCCCCCccccCCCCCCEeec
Q 038019 65 CHITKLRVYGLNKKGVIPEELVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKELTVLAF 144 (866)
Q Consensus 65 ~~v~~L~l~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 144 (866)
.+++.|++.+++++. + +.+..+++|++|+|++|++++..| ++++++|++|++++|.+.. ++ .+.++++|++|++
T Consensus 40 ~~l~~L~l~~~~i~~-l-~~l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~~~-~~-~l~~l~~L~~L~l 113 (199)
T d2omxa2 40 DQVTTLQADRLGIKS-I-DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIAD-IT-PLANLTNLTGLTL 113 (199)
T ss_dssp TTCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-CG-GGTTCTTCSEEEC
T ss_pred cCCCEEECCCCCCCC-c-cccccCCCcCcCccccccccCccc--ccCCccccccccccccccc-cc-ccccccccccccc
Confidence 368899999999875 3 358889999999999999986433 8999999999999999874 33 4899999999999
Q ss_pred cCCCCCCCCchhhcCCCCccEEEeecCCCCCCChhhhhcCcCCCEEEecCCCCCCCCcccccCCCCCCeEEccCCCCCCC
Q 038019 145 GTNNFSGALPPELGNLAKLEQLYIDSCGAGGEIPSTFAKLRNMQTLWASDNPFTGKIPDFIGNWTKLKSLRFQGNSFQGP 224 (866)
Q Consensus 145 s~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ 224 (866)
++|.+... ..+..+++|+.|++++|++... +.+..+++|+.|++.+|++++. + .++++++|++|++++|+++.
T Consensus 114 ~~~~~~~~--~~~~~l~~L~~L~l~~n~l~~~--~~l~~~~~L~~L~l~~n~l~~l-~-~l~~l~~L~~L~ls~N~i~~- 186 (199)
T d2omxa2 114 FNNQITDI--DPLKNLTNLNRLELSSNTISDI--SALSGLTSLQQLNFSSNQVTDL-K-PLANLTTLERLDISSNKVSD- 186 (199)
T ss_dssp CSSCCCCC--GGGTTCTTCSEEECCSSCCCCC--GGGTTCTTCSEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCC-
T ss_pred cccccccc--cccchhhhhHHhhhhhhhhccc--ccccccccccccccccccccCC-c-cccCCCCCCEEECCCCCCCC-
Confidence 99998754 4588999999999999998753 3588999999999999999864 3 48899999999999999985
Q ss_pred CchhhcCCCCCCEE
Q 038019 225 IPSSLSKLASLESL 238 (866)
Q Consensus 225 ~p~~~~~l~~L~~L 238 (866)
++ .+..+++|+.|
T Consensus 187 i~-~l~~L~~L~~L 199 (199)
T d2omxa2 187 IS-VLAKLTNLESL 199 (199)
T ss_dssp CG-GGGGCTTCSEE
T ss_pred Cc-cccCCCCCCcC
Confidence 43 57888888875
|
| >d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Hepatocyte growth factor receptor, c-MET species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.63 E-value=2.2e-17 Score=175.30 Aligned_cols=139 Identities=19% Similarity=0.265 Sum_probs=96.9
Q ss_pred hccCCCCCcccCHHHHHHHhcCCccccccCCCCcee--EEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcC
Q 038019 636 LVGIGSKPNIFGYAELRSATKDFNRSNKLGEGGYGP--VYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGR 713 (866)
Q Consensus 636 ~~~~~~~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~--vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~ 713 (866)
.|+.....|++.++....++.|||.++.+..+.... ...+..||..|+|||+..++.++.|+|||||||++|||+||+
T Consensus 152 iHrDLK~~NILl~~~~~~kL~DFG~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~ksDI~SfGivl~El~t~~ 231 (311)
T d1r0pa_ 152 VHRDLAARNCMLDEKFTVKVADFGLARDMYDKEFDSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRG 231 (311)
T ss_dssp CCSCCSGGGEEECTTCCEEECSSGGGCCTTTTTCCCTTCTTCSSCCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTS
T ss_pred ccCCccHHhEeECCCCCEEEecccchhhccccccccceecccccccccccChHHHhcCCCCChhHhhhhHHHHHHHHHCC
Confidence 343344457888787888999999999886554322 122346899999999999999999999999999999999988
Q ss_pred CCCCCCchhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhcCc
Q 038019 714 ASSDKSLDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLAGDI 788 (866)
Q Consensus 714 ~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~~~~ 788 (866)
.|+..... ...+..++. .+.. ..+| .... ..+.+++.+||+.||++||+|.||++.|+...
T Consensus 232 ~p~~~~~~--~~~~~~~i~----~g~~--~~~p---~~~~---~~l~~li~~cl~~dP~~RPs~~ei~~~L~~i~ 292 (311)
T d1r0pa_ 232 APPYPDVN--TFDITVYLL----QGRR--LLQP---EYCP---DPLYEVMLKCWHPKAEMRPSFSELVSRISAIF 292 (311)
T ss_dssp CCSCC--------CHHHHH----TTCC--CCCC---TTCC---HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred CCCCCCCC--HHHHHHHHH----cCCC--CCCc---ccCc---HHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHH
Confidence 88764321 122233322 2211 1112 1112 34556777999999999999999999998653
|
| >d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Fibroblast growth factor receptor 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.63 E-value=3.2e-17 Score=173.27 Aligned_cols=137 Identities=19% Similarity=0.185 Sum_probs=99.7
Q ss_pred ccCCCCCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHh-cCCC
Q 038019 637 VGIGSKPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIIS-GRAS 715 (866)
Q Consensus 637 ~~~~~~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~t-g~~p 715 (866)
|+.....|++...+...++.|||.++.+.............||++|||||++.++.++.|+||||||||+|||+| |+.|
T Consensus 158 HrDiKp~NiLl~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~l~~~~y~~k~DiwS~Gvvl~ell~~g~~p 237 (299)
T d1fgka_ 158 HRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSP 237 (299)
T ss_dssp CSCCSGGGEEECTTCCEEECSTTCCCCGGGCCTTCCCTTSCCGGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCS
T ss_pred eeeecccceeecCCCCeEeccchhhccccccccccccccCCCChhhhhhhHhcCCCCCchhhhHHhHHHHHHhccCCCCC
Confidence 333344477777777889999999998877665554555678999999999999999999999999999999998 6777
Q ss_pred CCCCchhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhcCc
Q 038019 716 SDKSLDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLAGDI 788 (866)
Q Consensus 716 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~~~~ 788 (866)
+....... +. ..+..+.. +...... ...+.+++.+||+.||++||||.||+++|+..+
T Consensus 238 ~~~~~~~~---~~----~~i~~~~~-----~~~p~~~---~~~l~~li~~cl~~dP~~Rps~~eil~~L~~i~ 295 (299)
T d1fgka_ 238 YPGVPVEE---LF----KLLKEGHR-----MDKPSNC---TNELYMMMRDCWHAVPSQRPTFKQLVEDLDRIV 295 (299)
T ss_dssp STTCCHHH---HH----HHHHTTCC-----CCCCSSC---CHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred CCCCCHHH---HH----HHHHcCCC-----CCCCccc---hHHHHHHHHHHccCCHhHCcCHHHHHHHHHHHh
Confidence 76443221 22 22222211 1111111 224566777999999999999999999998654
|
| >d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Activated CDC42 kinase 1, ACK1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.62 E-value=5e-17 Score=169.19 Aligned_cols=138 Identities=15% Similarity=0.171 Sum_probs=96.0
Q ss_pred hhccCCCCCcccCHHHHHHHhcCCccccccCCCCcee-EEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHh-c
Q 038019 635 VLVGIGSKPNIFGYAELRSATKDFNRSNKLGEGGYGP-VYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIIS-G 712 (866)
Q Consensus 635 ~~~~~~~~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~-vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~t-g 712 (866)
.+|+.....|++...+...++.|||+++.+....... ......||..|||||.+.+..++.++|||||||++|||+| |
T Consensus 132 iiHrDikp~NIll~~~~~vkl~DfGl~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~S~Gvil~emlt~G 211 (273)
T d1u46a_ 132 FIHRDLAARNLLLATRDLVKIGDFGLMRALPQNDDHYVMQEHRKVPFAWCAPESLKTRTFSHASDTWMFGVTLWEMFTYG 211 (273)
T ss_dssp EECSCCCGGGEEEEETTEEEECCCTTCEECCC-CCEEEC-----CCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTS
T ss_pred EeeeeecHHHhccccccceeeccchhhhhcccCCCcceecCccccCcccCCHHHHhCCCCCcchhhhhhHHHHHHHHhCC
Confidence 3444444458888888888999999999887654332 2334468899999999999999999999999999999998 8
Q ss_pred CCCCCCCchhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhc
Q 038019 713 RASSDKSLDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLAG 786 (866)
Q Consensus 713 ~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~~ 786 (866)
+.|+...... ....++. ..+... +.....+ ..+.+++..||+.||++||||.||++.|+.
T Consensus 212 ~~Pf~~~~~~---~~~~~i~---~~~~~~----~~~~~~~----~~l~~li~~cl~~dp~~RPt~~ei~~~L~~ 271 (273)
T d1u46a_ 212 QEPWIGLNGS---QILHKID---KEGERL----PRPEDCP----QDIYNVMVQCWAHKPEDRPTFVALRDFLLE 271 (273)
T ss_dssp CCTTTTCCHH---HHHHHHH---TSCCCC----CCCTTCC----HHHHHHHHHHTCSSGGGSCCHHHHHHHHHH
T ss_pred CCCCCCcCHH---HHHHHHH---hCCCCC----CCccccc----HHHHHHHHHHcCCChhHCcCHHHHHHHHHh
Confidence 9998754332 2233322 222111 1111222 235567779999999999999999999873
|
| >d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Focal adhesion kinase 1 (fak) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.62 E-value=3.2e-17 Score=171.01 Aligned_cols=135 Identities=18% Similarity=0.165 Sum_probs=85.1
Q ss_pred ccCCCCCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHh-cCCC
Q 038019 637 VGIGSKPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIIS-GRAS 715 (866)
Q Consensus 637 ~~~~~~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~t-g~~p 715 (866)
|+.....|++...+...++.|||.++.+...... ......||+.|||||++..+.++.|+|||||||++|||+| |+.|
T Consensus 131 HrDlKp~NIll~~~~~~Kl~DfG~a~~~~~~~~~-~~~~~~gt~~y~apE~l~~~~~~~~~DiwSlGvil~e~lt~g~~P 209 (273)
T d1mp8a_ 131 HRDIAARNVLVSSNDCVKLGDFGLSRYMEDSTYY-KASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKP 209 (273)
T ss_dssp CSCCSGGGEEEEETTEEEECC--------------------CCGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTSCCT
T ss_pred ccccchhheeecCCCcEEEccchhheeccCCcce-eccceecCcccchhhHhccCCCCCccccccchHHHHHHHhcCCCC
Confidence 3333344777777778899999999987654332 2233468999999999999999999999999999999998 8999
Q ss_pred CCCCchhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhcC
Q 038019 716 SDKSLDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLAGD 787 (866)
Q Consensus 716 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~~~ 787 (866)
+......+ +.+.+. .+.. +.+... ....+.+++..||+.||++||||.||++.|+..
T Consensus 210 ~~~~~~~~---~~~~i~----~~~~-----~~~~~~---~~~~~~~li~~cl~~dp~~Rps~~ei~~~L~~i 266 (273)
T d1mp8a_ 210 FQGVKNND---VIGRIE----NGER-----LPMPPN---CPPTLYSLMTKCWAYDPSRRPRFTELKAQLSTI 266 (273)
T ss_dssp TTTCCGGG---HHHHHH----TTCC-----CCCCTT---CCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred CCCCCHHH---HHHHHH----cCCC-----CCCCCC---CCHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHH
Confidence 87654332 333222 2211 111111 123455666799999999999999999999753
|
| >d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Aurora-related kinase 1 (aurora-2) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.61 E-value=9.4e-17 Score=165.92 Aligned_cols=126 Identities=18% Similarity=0.198 Sum_probs=90.0
Q ss_pred ccCCCCCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCC
Q 038019 637 VGIGSKPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASS 716 (866)
Q Consensus 637 ~~~~~~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~ 716 (866)
|+.....|++...+...++.|||.++.+..+.. ....||+.|||||.+.+..++.++|||||||+++||+||+.|+
T Consensus 129 HrDiKp~Nill~~~~~~kl~DFG~a~~~~~~~~----~~~~Gt~~Y~APE~~~~~~~~~~~DiwSlGvilyell~G~~Pf 204 (263)
T d2j4za1 129 HRDIKPENLLLGSAGELKIADFGWSVHAPSSRR----TTLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPF 204 (263)
T ss_dssp CCCCCGGGEEECTTSCEEECCCCSCSCCCCCCC----EETTEEGGGCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCTT
T ss_pred eeeeccccceecCCCCEeecccceeeecCCCcc----cccCCCCcccCHHHHcCCCCCchhhhhhHhHHHHHHhcCCCCC
Confidence 333333477777777789999999988765432 3457999999999999999999999999999999999999999
Q ss_pred CCCchhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 717 DKSLDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 717 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
......+ +.. ....+. +.+++...++ +.++..+|++.||++|||+.||++
T Consensus 205 ~~~~~~~---~~~----~i~~~~------~~~p~~~s~~---~~~li~~~L~~dp~~R~t~~eil~ 254 (263)
T d2j4za1 205 EANTYQE---TYK----RISRVE------FTFPDFVTEG---ARDLISRLLKHNPSQRPMLREVLE 254 (263)
T ss_dssp CCSSHHH---HHH----HHHTTC------CCCCTTSCHH---HHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred CCCCHHH---HHH----HHHcCC------CCCCccCCHH---HHHHHHHHccCCHhHCcCHHHHHc
Confidence 7543222 111 111111 1222222233 344556999999999999999975
|
| >d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Carboxyl-terminal src kinase (csk) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.61 E-value=1.3e-16 Score=164.70 Aligned_cols=130 Identities=18% Similarity=0.171 Sum_probs=87.2
Q ss_pred ccCCCCCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHh-cCCC
Q 038019 637 VGIGSKPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIIS-GRAS 715 (866)
Q Consensus 637 ~~~~~~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~t-g~~p 715 (866)
++.....|++.+.+...++.|||.++..... .....+|..|||||++.++.++.|+|||||||++|||+| |+.|
T Consensus 126 H~dlkp~Nil~~~~~~~kl~dfg~s~~~~~~-----~~~~~~~~~y~aPE~l~~~~~t~~sDIwSfG~il~el~t~~~~p 200 (262)
T d1byga_ 126 HRDLAARNVLVSEDNVAKVSDFGLTKEASST-----QDTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVP 200 (262)
T ss_dssp CSCCSGGGEEECTTSCEEECCCCC-----------------CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCS
T ss_pred ccccchHhheecCCCCEeecccccceecCCC-----CccccccccCCChHHHhCCCCChHHHHHhHHHHHHHHHHCCCCC
Confidence 3333445777777788889999999876532 223357899999999999999999999999999999999 6777
Q ss_pred CCCCchhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhc
Q 038019 716 SDKSLDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLAG 786 (866)
Q Consensus 716 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~~ 786 (866)
+..... ..+..++.. + ..+.+..... .++.+++.+||+.||++||||.||+++|+.
T Consensus 201 ~~~~~~---~~~~~~i~~----~-----~~~~~~~~~~---~~~~~li~~cl~~dP~~Rps~~~l~~~L~~ 256 (262)
T d1byga_ 201 YPRIPL---KDVVPRVEK----G-----YKMDAPDGCP---PAVYEVMKNCWHLDAAMRPSFLQLREQLEH 256 (262)
T ss_dssp CTTSCG---GGHHHHHTT----T-----CCCCCCTTCC---HHHHHHHHHHTCSSGGGSCCHHHHHHHHHH
T ss_pred CCCCCH---HHHHHHHHc----C-----CCCCCCccCC---HHHHHHHHHHcccCHhHCcCHHHHHHHHHH
Confidence 664332 234444322 2 1122221112 234566679999999999999999999974
|
| >d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Cell cycle checkpoint kinase chk1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.61 E-value=5e-17 Score=168.72 Aligned_cols=133 Identities=15% Similarity=0.197 Sum_probs=90.0
Q ss_pred ccCCCCCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCC-CchhHHHHHHHHHHHHHhcCCC
Q 038019 637 VGIGSKPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHL-TEKADVFSFGVVALEIISGRAS 715 (866)
Q Consensus 637 ~~~~~~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~-t~ksDVySfGvvLlEl~tg~~p 715 (866)
|+.....|++..++...++.|||.++.+..+.........+||+.|||||.+.+..+ +.++||||+||+++||+||+.|
T Consensus 126 HrDiKp~NILl~~~~~~KL~DFG~a~~~~~~~~~~~~~~~~GT~~Y~APE~~~~~~~~~~~~DiwSlGvilyeml~G~~p 205 (271)
T d1nvra_ 126 HRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELP 205 (271)
T ss_dssp CSCCCGGGEEECTTCCEEECCCTTCEECEETTEECCBCCCCSCGGGSCTHHHHCSSBCHHHHHHHHHHHHHHHHHHSSCS
T ss_pred cCcccHHHEEECCCCCEEEccchhheeeccCCccccccceeeCcCccCHhHhcCCCCCCCceeeeHhHHHHHHHHhCCCC
Confidence 333333477777777788999999998876554444455689999999999987776 6789999999999999999999
Q ss_pred CCCCchhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 716 SDKSLDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 716 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
++...... .....+ ..... ..+.....+ ++ +.++..+|++.||++|||+.||++
T Consensus 206 f~~~~~~~-~~~~~~-----~~~~~---~~~~~~~~s-~~---~~~li~~~L~~dP~~R~t~~eil~ 259 (271)
T d1nvra_ 206 WDQPSDSC-QEYSDW-----KEKKT---YLNPWKKID-SA---PLALLHKILVENPSARITIPDIKK 259 (271)
T ss_dssp CSSSSTTS-HHHHHH-----HTTCT---TSTTGGGSC-HH---HHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred CCCCChHH-HHHHHH-----hcCCC---CCCccccCC-HH---HHHHHHHHcCCChhHCcCHHHHhc
Confidence 97543221 111111 11100 001111122 23 345566999999999999999853
|
| >d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: c-KIT receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.60 E-value=8e-17 Score=171.22 Aligned_cols=134 Identities=18% Similarity=0.210 Sum_probs=96.1
Q ss_pred CCCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCC-CCCC
Q 038019 641 SKPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRAS-SDKS 719 (866)
Q Consensus 641 ~~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p-~~~~ 719 (866)
...|++...+...++.|||.++.+.......+.....||+.|||||++.++.++.|+|||||||++|||+|++.| +...
T Consensus 172 Kp~NIl~~~~~~~ki~DfG~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DIwS~G~~l~ellt~g~p~~~~~ 251 (311)
T d1t46a_ 172 AARNILLTHGRITKICDFGLARDIKNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPGM 251 (311)
T ss_dssp SGGGEEEETTTEEEECCCGGGSCTTSCTTSEECSSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTC
T ss_pred ccccccccccCcccccccchheeccCCCcceEeeecccChHHcCHHHhcCCCCCCcccccchHHHHHHHHhCCCCCCCCC
Confidence 334777777777889999999999876554555566889999999999999999999999999999999995555 4433
Q ss_pred chhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhcCc
Q 038019 720 LDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLAGDI 788 (866)
Q Consensus 720 ~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~~~~ 788 (866)
...+. +.+. ...+. .+...+.. ...+.+++.+||+.||++||||.||+++|++.+
T Consensus 252 ~~~~~--~~~~----i~~~~-----~~~~~~~~---~~~l~~Li~~cl~~dP~~RPs~~~il~~L~~~i 306 (311)
T d1t46a_ 252 PVDSK--FYKM----IKEGF-----RMLSPEHA---PAEMYDIMKTCWDADPLKRPTFKQIVQLIEKQI 306 (311)
T ss_dssp CSSHH--HHHH----HHHTC-----CCCCCTTS---CHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred CHHHH--HHHH----HhcCC-----CCCCcccc---cHHHHHHHHHHcCCChhHCcCHHHHHHHHHHhh
Confidence 22211 2222 22221 11111111 234566777999999999999999999998644
|
| >d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: 3-phosphoinositide dependent protein kinase-1 Pdk1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.59 E-value=1.3e-16 Score=167.00 Aligned_cols=131 Identities=10% Similarity=0.085 Sum_probs=88.0
Q ss_pred hccCCCCCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCC
Q 038019 636 LVGIGSKPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRAS 715 (866)
Q Consensus 636 ~~~~~~~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p 715 (866)
+|+.....|++..++...++.|||.++.+............+||+.|||||.+.+..++.++||||+||+++||+||+.|
T Consensus 130 iHrDiKp~NIll~~~~~vkl~DFG~a~~~~~~~~~~~~~~~~GT~~Y~APE~~~~~~~~~~~DiwSlGvilyell~g~~P 209 (288)
T d1uu3a_ 130 IHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANSFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPP 209 (288)
T ss_dssp ECSCCSGGGEEECTTSCEEECCCTTCEECC----------CCCCGGGCCHHHHHTCCCCHHHHHHHHHHHHHHHHHSSCS
T ss_pred EcCcCCccccccCCCceEEecccccceecccCCcccccccccCCccccCceeeccCCCCcccceehhhHHHHHHhhCCCC
Confidence 33333334777777777889999999998765544455566899999999999999999999999999999999999999
Q ss_pred CCCCchhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 716 SDKSLDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 716 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
|......+ +.. ....+. +.+.+...++ +.++..+|++.||++|||++|+.+
T Consensus 210 f~~~~~~~---~~~----~i~~~~------~~~p~~~s~~---~~~li~~~L~~dP~~R~t~~e~~~ 260 (288)
T d1uu3a_ 210 FRAGNEYL---IFQ----KIIKLE------YDFPEKFFPK---ARDLVEKLLVLDATKRLGCEEMEG 260 (288)
T ss_dssp SCCSSHHH---HHH----HHHTTC------CCCCTTCCHH---HHHHHHTTSCSSGGGSTTSGGGTC
T ss_pred CCCcCHHH---HHH----HHHcCC------CCCCccCCHH---HHHHHHHHccCCHhHCcCHHHHcC
Confidence 97543221 111 111111 1121111223 445666999999999999998743
|
| >d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Tie2 kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.57 E-value=2.5e-16 Score=167.10 Aligned_cols=135 Identities=19% Similarity=0.104 Sum_probs=92.9
Q ss_pred ccCCCCCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCC-C
Q 038019 637 VGIGSKPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRA-S 715 (866)
Q Consensus 637 ~~~~~~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~-p 715 (866)
|+.....|++...+...++.|||.++........ ....||..|+|||.+..+.++.|+|||||||++|||+||.. |
T Consensus 150 HrDlkp~NIL~~~~~~~kl~DfG~a~~~~~~~~~---~~~~gt~~y~aPE~l~~~~~~~~sDvwSfGvil~ell~~~~~p 226 (309)
T d1fvra_ 150 HRDLAARNILVGENYVAKIADFGLSRGQEVYVKK---TMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTP 226 (309)
T ss_dssp CSCCSGGGEEECGGGCEEECCTTCEESSCEECCC-------CCTTTCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCT
T ss_pred ccccccceEEEcCCCceEEccccccccccccccc---cceecCCcccchHHhccCCCCccceeehhHHHHHHHHhcCCCC
Confidence 3333344778788888899999999876543221 23458999999999999999999999999999999999765 5
Q ss_pred CCCCchhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhcCcC
Q 038019 716 SDKSLDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLAGDIE 789 (866)
Q Consensus 716 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~~~~~ 789 (866)
+...... .+.+++ .++. .+....... ..+.+++.+||+.||++||||+||++.|+..+.
T Consensus 227 ~~~~~~~---~~~~~i----~~~~-----~~~~~~~~~---~~~~~li~~cl~~dP~~RPs~~eil~~L~~i~~ 285 (309)
T d1fvra_ 227 YCGMTCA---ELYEKL----PQGY-----RLEKPLNCD---DEVYDLMRQCWREKPYERPSFAQILVSLNRMLE 285 (309)
T ss_dssp TTTCCHH---HHHHHG----GGTC-----CCCCCTTBC---HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred CCCCCHH---HHHHHH----HhcC-----CCCCCccCC---HHHHHHHHHHcCCChhHCcCHHHHHHHHHHHHh
Confidence 5543221 222222 2221 122211112 245556679999999999999999999987654
|
| >d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: pak1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.57 E-value=4.1e-16 Score=163.57 Aligned_cols=132 Identities=16% Similarity=0.149 Sum_probs=90.6
Q ss_pred hccCCCCCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCC
Q 038019 636 LVGIGSKPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRAS 715 (866)
Q Consensus 636 ~~~~~~~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p 715 (866)
+|+.....|++...+...++.|||.++.+..+.. ......||+.|||||.+.++.++.++|||||||+++||+||+.|
T Consensus 138 iHrDiKp~NILl~~~~~vkl~DFG~a~~~~~~~~--~~~~~~gt~~Y~aPE~~~~~~~~~~~DiwSlGvilyemltG~~P 215 (293)
T d1yhwa1 138 IHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQS--KRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPP 215 (293)
T ss_dssp ECCCCSGGGEEECTTCCEEECCCTTCEECCSTTC--CBCCCCSCGGGCCHHHHSSSCBCTHHHHHHHHHHHHHHHHSSCT
T ss_pred cccCCcHHHeEECCCCcEeeccchhheeeccccc--cccccccCCCccChhhhcCCCCCchhceehHhHHHHHHhhCCCC
Confidence 3333333477777777789999999998865432 22345799999999999999999999999999999999999999
Q ss_pred CCCCchhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 716 SDKSLDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 716 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
|......+ .. ......+. .+........++ +.++..+|++.||++|||+.|+++
T Consensus 216 f~~~~~~~---~~---~~~~~~~~----~~~~~~~~~s~~---~~~li~~~L~~dP~~R~s~~eil~ 269 (293)
T d1yhwa1 216 YLNENPLR---AL---YLIATNGT----PELQNPEKLSAI---FRDFLNRCLDMDVEKRGSAKELLQ 269 (293)
T ss_dssp TTTSCHHH---HH---HHHHHHCS----CCCSSGGGSCHH---HHHHHHHHTCSSTTTSCCHHHHTT
T ss_pred CCCCCHHH---HH---HHHHhCCC----CCCCCcccCCHH---HHHHHHHHccCChhHCcCHHHHhc
Confidence 97543322 11 11111111 111111111223 445566999999999999999864
|
| >d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Protein kinase wnk1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.57 E-value=1e-15 Score=158.66 Aligned_cols=128 Identities=15% Similarity=0.155 Sum_probs=85.9
Q ss_pred ccCCCCCcccCH-HHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCC
Q 038019 637 VGIGSKPNIFGY-AELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRAS 715 (866)
Q Consensus 637 ~~~~~~~~~~~~-~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p 715 (866)
|+.....|++.. ++...++.|||+++...... .+...||+.|||||.+. ++++.|+|||||||++|||+||+.|
T Consensus 137 HrDiKp~NILl~~~~~~~Kl~DFGla~~~~~~~----~~~~~GT~~Y~aPE~~~-~~~~~~~DIwSlGvilyel~~g~~P 211 (270)
T d1t4ha_ 137 HRDLKCDNIFITGPTGSVKIGDLGLATLKRASF----AKAVIGTPEFMAPEMYE-EKYDESVDVYAFGMCMLEMATSEYP 211 (270)
T ss_dssp CSCCCGGGEEESSTTSCEEECCTTGGGGCCTTS----BEESCSSCCCCCGGGGG-TCCCTHHHHHHHHHHHHHHHHSSCT
T ss_pred eCCcChhhceeeCCCCCEEEeecCcceeccCCc----cCCcccCccccCHHHhC-CCCCCcCchhhHHHHHHHHHHCCCC
Confidence 333333466664 35567899999998765432 24567999999999875 5699999999999999999999999
Q ss_pred CCCCchhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 716 SDKSLDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 716 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
|........ + ......+.. .+.+.....++ +.++..+|++.||++|||+.|+++
T Consensus 212 f~~~~~~~~--~----~~~i~~~~~----~~~~~~~~~~~---~~~li~~~l~~dp~~R~s~~ell~ 265 (270)
T d1t4ha_ 212 YSECQNAAQ--I----YRRVTSGVK----PASFDKVAIPE---VKEIIEGCIRQNKDERYSIKDLLN 265 (270)
T ss_dssp TTTCSSHHH--H----HHHHTTTCC----CGGGGGCCCHH---HHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred CCCcccHHH--H----HHHHHcCCC----CcccCccCCHH---HHHHHHHHccCCHhHCcCHHHHhC
Confidence 975432211 1 112221111 11111112223 445667999999999999999865
|
| >d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Serine/threonine protein kinase TAO2 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.55 E-value=8.4e-16 Score=162.51 Aligned_cols=126 Identities=18% Similarity=0.250 Sum_probs=88.2
Q ss_pred hccCCCCCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeee---cCCCCchhHHHHHHHHHHHHHhc
Q 038019 636 LVGIGSKPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAM---RGHLTEKADVFSFGVVALEIISG 712 (866)
Q Consensus 636 ~~~~~~~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~---~~~~t~ksDVySfGvvLlEl~tg 712 (866)
+|+.....|++...+...++.|||.++...... ...||++|||||++. .+.++.|+|||||||++|||+||
T Consensus 137 iHrDiKp~NILl~~~~~~Kl~DFG~a~~~~~~~------~~~GT~~Y~APE~~~~~~~~~y~~~~DiwSlGvilyel~~g 210 (309)
T d1u5ra_ 137 IHRDVKAGNILLSEPGLVKLGDFGSASIMAPAN------SFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAER 210 (309)
T ss_dssp BCCCCSGGGEEEETTTEEEECCCTTCBSSSSBC------CCCSCGGGCCHHHHTTTTSCCBCTHHHHHHHHHHHHHHHHS
T ss_pred eccCCCcceEEECCCCCEEEeecccccccCCCC------ccccCccccCHHHHhccCCCCcCchhhhhhHHHHHHHHHHC
Confidence 343344448888788888999999998876532 246999999999985 35799999999999999999999
Q ss_pred CCCCCCCchhhhhcHHHHHHHHhhcCCcccccCCcc-cccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 713 RASSDKSLDMEKIYLLEWAWNLHENNQSFGLVDPTL-TEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 713 ~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l-~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
+.|+......+ . ...... +. .|.+ .....++ +.++..+|++.||++|||+.|+++
T Consensus 211 ~~Pf~~~~~~~---~---~~~i~~-~~-----~~~~~~~~~s~~---~~~li~~~L~~dP~~Rpt~~ell~ 266 (309)
T d1u5ra_ 211 KPPLFNMNAMS---A---LYHIAQ-NE-----SPALQSGHWSEY---FRNFVDSCLQKIPQDRPTSEVLLK 266 (309)
T ss_dssp SCTTTTSCHHH---H---HHHHHH-SC-----CCCCSCTTSCHH---HHHHHHHHTCSSGGGSCCHHHHTT
T ss_pred CCCCCCCCHHH---H---HHHHHh-CC-----CCCCCCCCCCHH---HHHHHHHHCcCChhHCcCHHHHHh
Confidence 99987543221 1 111111 11 1111 1111233 445566999999999999999975
|
| >d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Calmodulin-dependent protein kinase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.54 E-value=8.1e-16 Score=162.58 Aligned_cols=118 Identities=19% Similarity=0.260 Sum_probs=71.0
Q ss_pred HHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCCchhhhhcHHH
Q 038019 650 ELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSLDMEKIYLLE 729 (866)
Q Consensus 650 ~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~~~~~~l~~ 729 (866)
+...++.|||.++.+..+. .....+||+.|||||.+.++.++.++|||||||+++||+||+.||......+ +..
T Consensus 146 ~~~vkl~DFG~a~~~~~~~---~~~~~~GT~~y~APE~~~~~~~~~~~DiwSlGvilyell~g~~Pf~~~~~~~---~~~ 219 (307)
T d1a06a_ 146 DSKIMISDFGLSKMEDPGS---VLSTACGTPGYVAPEVLAQKPYSKAVDCWSIGVIAYILLCGYPPFYDENDAK---LFE 219 (307)
T ss_dssp TCCEEECCC---------------------CTTSCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHH---HHH
T ss_pred CceEEEeccceeEEccCCC---eeeeeeeCccccCcHHHcCCCCCcHHHhhhhhHHHHHHHhCCCCCCCCCHHH---HHH
Confidence 4556889999999887653 3445679999999999999999999999999999999999999997543222 222
Q ss_pred HHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 730 WAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 730 ~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
.+. .+.. ....+.....+ ..+.++...|++.||++|||+.|+++
T Consensus 220 ~i~----~~~~-~~~~~~~~~~s----~~~~~li~~~L~~dP~~R~s~~eil~ 263 (307)
T d1a06a_ 220 QIL----KAEY-EFDSPYWDDIS----DSAKDFIRHLMEKDPEKRFTCEQALQ 263 (307)
T ss_dssp HHH----TTCC-CCCTTTTTTSC----HHHHHHHHHHSCSSGGGSCCHHHHHH
T ss_pred HHh----ccCC-CCCCccccCCC----HHHHHHHHHHccCCHhHCcCHHHHhc
Confidence 221 1111 01111111222 23445666999999999999999976
|
| >d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: STE20-like serine/threonine-protein kinase, SLK species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.53 E-value=3.5e-16 Score=163.88 Aligned_cols=125 Identities=18% Similarity=0.113 Sum_probs=84.2
Q ss_pred CcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeee-----cCCCCchhHHHHHHHHHHHHHhcCCCCC
Q 038019 643 PNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAM-----RGHLTEKADVFSFGVVALEIISGRASSD 717 (866)
Q Consensus 643 ~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~-----~~~~t~ksDVySfGvvLlEl~tg~~p~~ 717 (866)
.|++...+...++.|||.++.+.... .......||+.|||||++. ...++.|+|||||||++|||+||+.|+.
T Consensus 139 ~NIll~~~~~~Kl~DFG~a~~~~~~~--~~~~~~~Gt~~y~APE~l~~~~~~~~~y~~k~DiwSlGvilyemltg~~Pf~ 216 (288)
T d2jfla1 139 GNILFTLDGDIKLADFGVSAKNTRTI--QRRDSFIGTPYWMAPEVVMCETSKDRPYDYKADVWSLGITLIEMAEIEPPHH 216 (288)
T ss_dssp GGEEECTTSCEEECCCTTCEECHHHH--HHHTCCCSCCTTCCHHHHTTCSTTTSSTTTHHHHHHHHHHHHHHHHSSCTTT
T ss_pred hheeECCCCCEEEEechhhhccCCCc--ccccccccccccCCHHHHhhcccCCCCCChhhhHHHHHHHHHHHhhCCCCCC
Confidence 47777777778999999987664321 1112346999999999874 4568999999999999999999999997
Q ss_pred CCchhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 718 KSLDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 718 ~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
.....+ ....+. . +....... .....+ .+.++...|++.||++|||+.|+++
T Consensus 217 ~~~~~~---~~~~i~---~-~~~~~~~~---~~~~s~---~~~~li~~~L~~dp~~R~t~~ell~ 268 (288)
T d2jfla1 217 ELNPMR---VLLKIA---K-SEPPTLAQ---PSRWSS---NFKDFLKKCLEKNVDARWTTSQLLQ 268 (288)
T ss_dssp TSCGGG---HHHHHH---H-SCCCCCSS---GGGSCH---HHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred CCCHHH---HHHHHH---c-CCCCCCCc---cccCCH---HHHHHHHHHccCChhHCcCHHHHhc
Confidence 654322 221111 1 11101100 111122 3445566999999999999999864
|
| >d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Casein kinase-1, CK1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.52 E-value=1.2e-15 Score=161.32 Aligned_cols=131 Identities=12% Similarity=0.003 Sum_probs=86.0
Q ss_pred HHHHHHhcCCccccccCCCCcee-----EEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCCchhh
Q 038019 649 AELRSATKDFNRSNKLGEGGYGP-----VYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSLDME 723 (866)
Q Consensus 649 ~~~~~~~~dF~~~~~lg~g~~g~-----vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~~~ 723 (866)
.+...++.|||.++.+..+.... ..+...||+.|||||...+..++.++|||||||+++||+||+.|+.......
T Consensus 141 ~~~~vkl~DFG~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~~l~el~tg~~P~~~~~~~~ 220 (299)
T d1ckia_ 141 KGNLVYIIDFGLAKKYRDARTHQHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAAT 220 (299)
T ss_dssp GTTCEEECCCSSCEECBCTTTCCBCCCCBCCSCCCCSSSCCHHHHTTBCCCHHHHHHHHHHHHHHHHHSSCTTCCCC---
T ss_pred CCceeeeeccCcceeccccccccceeccccCCcCCCccccCHHHHhCCCCCChhhEEecCHHHHHHHhCCCcccccchHH
Confidence 34456788999999887654321 1123479999999999999999999999999999999999999997654433
Q ss_pred hhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhcC
Q 038019 724 KIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLAGD 787 (866)
Q Consensus 724 ~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~~~ 787 (866)
................. +.+.... ...+.+++..|++.+|++||++.++.+.|+..
T Consensus 221 ~~~~~~~~~~~~~~~~~-----~~~~~~~---p~~~~~li~~cl~~~p~~RP~~~~i~~~l~~~ 276 (299)
T d1ckia_ 221 KRQKYERISEKKMSTPI-----EVLCKGY---PSEFATYLNFCRSLRFDDKPDYSYLRQLFRNL 276 (299)
T ss_dssp ----HHHHHHHHHHSCH-----HHHTTTS---CHHHHHHHHHHHHSCTTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHhhcccCCCCh-----hHhccCC---CHHHHHHHHHHccCChhHCcCHHHHHHHHHHH
Confidence 22221111111000000 0011111 13355566699999999999999999988754
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.52 E-value=1.3e-15 Score=159.47 Aligned_cols=208 Identities=18% Similarity=0.191 Sum_probs=109.1
Q ss_pred CCCCEeeccCCCCCCC-CchhhcCCCCccEEEeecCCCCCCChhhhhcCcCCCEEEecCC-CCCCC-CcccccCCCCCCe
Q 038019 137 KELTVLAFGTNNFSGA-LPPELGNLAKLEQLYIDSCGAGGEIPSTFAKLRNMQTLWASDN-PFTGK-IPDFIGNWTKLKS 213 (866)
Q Consensus 137 ~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N-~l~~~-~p~~l~~l~~L~~ 213 (866)
.+|++|||++|.++.. +...+..+++|++|+|++|.++...+..+..+++|++|+++++ .++.. +...+.++++|++
T Consensus 46 ~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~ 125 (284)
T d2astb2 46 FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDE 125 (284)
T ss_dssp BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCE
T ss_pred CCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccc
Confidence 3455555555444322 1223444555555555555554444445555555555555553 33311 1122234555666
Q ss_pred EEccCCC-CCCC-Cchhhc-CCCCCCEEEccCcc--CCCCCch-hhhcCCCCCceeccCc-ccccCCCcccCCCCCcCEE
Q 038019 214 LRFQGNS-FQGP-IPSSLS-KLASLESLQMSDIY--NVSSSLD-FVMSLKNLTDLSLRNA-LITGTIPFGIGELQMLQIL 286 (866)
Q Consensus 214 L~L~~N~-l~~~-~p~~~~-~l~~L~~L~l~~n~--~~~~~~~-~~~~l~~L~~L~L~~n-~l~~~~p~~~~~l~~L~~L 286 (866)
|+++++. ++.. +...+. ..++|+.|+++++. +...... .+..+++|++|++++| .+++.....+..+++|+.|
T Consensus 126 L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L 205 (284)
T d2astb2 126 LNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHL 205 (284)
T ss_dssp EECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEE
T ss_pred cccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCEE
Confidence 6665542 2211 112222 23566666666532 2211122 3345777788888765 4666666677778888888
Q ss_pred eeecC-cCcccCCcccCCCCCCcEEECcCCCCcccCCcccCCCCCEEEeeCCCCCCccCc
Q 038019 287 DLSFN-NLTGQIPATLFNIDSLEYLFLGNNSLSGTLPDQKSENLQKIDLSHNHLSGTFPL 345 (866)
Q Consensus 287 ~Ls~N-~l~~~~p~~l~~l~~L~~L~L~~N~l~g~~p~~~~~~L~~L~Ls~N~l~g~~p~ 345 (866)
+|++| .+++.....+.++++|+.|+++++ ++...-......+..|.+..++++...+.
T Consensus 206 ~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~-~~d~~l~~l~~~lp~L~i~~~~ls~~~~~ 264 (284)
T d2astb2 206 SLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLKEALPHLQINCSHFTTIARP 264 (284)
T ss_dssp ECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHHHHSTTSEESCCCSCCTTCS
T ss_pred ECCCCCCCChHHHHHHhcCCCCCEEeeeCC-CCHHHHHHHHHhCccccccCccCCCCCCC
Confidence 88884 677666667778888888888776 32111111112344455667777655443
|
| >d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Cyclin-dependent PK, CDK6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.51 E-value=1.7e-15 Score=160.53 Aligned_cols=143 Identities=14% Similarity=0.082 Sum_probs=91.0
Q ss_pred ccCCCCCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCC
Q 038019 637 VGIGSKPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASS 716 (866)
Q Consensus 637 ~~~~~~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~ 716 (866)
|......|++...+...++.|||.++....+.. .....||+.|||||++.+..++.|+||||+||+++||+||+.||
T Consensus 139 HrDiKp~NILi~~~~~~kl~dfg~~~~~~~~~~---~~~~~gT~~Y~APE~~~~~~y~~~~DiwSlG~il~ell~g~~pf 215 (305)
T d1blxa_ 139 HRDLKPQNILVTSSGQIKLADFGLARIYSFQMA---LTSVVVTLWYRAPEVLLQSSYATPVDLWSVGCIFAEMFRRKPLF 215 (305)
T ss_dssp CCCCCGGGEEECTTCCEEECSCCSCCCCCGGGG---GCCCCCCCTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSC
T ss_pred ecCCCccEEEEcCCCCeeecchhhhhhhccccc---CCCcccChhhcCcchhcCCCCChhehhhchHHHHHHHHHCCCCC
Confidence 333333477777777788999999887654432 33457999999999999999999999999999999999999999
Q ss_pred CCCchhhhhcHHHHHHHHhhcCCcc-----------cccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 717 DKSLDMEKIYLLEWAWNLHENNQSF-----------GLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 717 ~~~~~~~~~~l~~~~~~~~~~~~~~-----------~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
......+.................. .................+.++..+|++.||++|||+.|+++
T Consensus 216 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dli~~mL~~dP~~R~sa~e~L~ 292 (305)
T d1blxa_ 216 RGSSDVDQLGKILDVIGLPGEEDWPRDVALPRQAFHSKSAQPIEKFVTDIDELGKDLLLKCLTFNPAKRISAYSALS 292 (305)
T ss_dssp CCSSHHHHHHHHHHHHCCCCGGGSCTTCSSCGGGSCCCCCCCGGGTCCSCCHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred CCCCHHHHHHHHHHhhCCCchhcccccccchhhhhccccccchhhccccCCHHHHHHHHHHCcCChhHCcCHHHHhc
Confidence 8654333221111111000000000 00000001111111123445667999999999999999864
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.50 E-value=2e-16 Score=177.29 Aligned_cols=157 Identities=18% Similarity=0.145 Sum_probs=106.6
Q ss_pred cCCCCCCeEEccCCCCCCC----CchhhcCCCCCCEEEccCccCCCCCchhh-----hcCCCCCceeccCcccccCCCc-
Q 038019 206 GNWTKLKSLRFQGNSFQGP----IPSSLSKLASLESLQMSDIYNVSSSLDFV-----MSLKNLTDLSLRNALITGTIPF- 275 (866)
Q Consensus 206 ~~l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~l~~n~~~~~~~~~~-----~~l~~L~~L~L~~n~l~~~~p~- 275 (866)
.....|+.|++++|.+... ....+...+.++.+++++|.+.......+ .....|+.+++++|.++.....
T Consensus 252 ~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~~l~~~~~~~ 331 (460)
T d1z7xw1 252 HPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSH 331 (460)
T ss_dssp STTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccchhhccccccccccccccccccchhhhhhhh
Confidence 3456788889988887633 23345668899999999988753322222 2346799999999988765332
Q ss_pred ---ccCCCCCcCEEeeecCcCccc----CCcccC-CCCCCcEEECcCCCCccc----CCcc--cCCCCCEEEeeCCCCCC
Q 038019 276 ---GIGELQMLQILDLSFNNLTGQ----IPATLF-NIDSLEYLFLGNNSLSGT----LPDQ--KSENLQKIDLSHNHLSG 341 (866)
Q Consensus 276 ---~~~~l~~L~~L~Ls~N~l~~~----~p~~l~-~l~~L~~L~L~~N~l~g~----~p~~--~~~~L~~L~Ls~N~l~g 341 (866)
.+...++|+.|+|++|++++. +...+. ..+.|++|+|++|.++.. ++.. ..++|++|+|++|+|+.
T Consensus 332 l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~ 411 (460)
T d1z7xw1 332 FSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGD 411 (460)
T ss_dssp HHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCH
T ss_pred cccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCCH
Confidence 334557899999999999753 333443 467899999999999742 2211 24789999999999986
Q ss_pred ccCcccc-------cccc-cccccccccc
Q 038019 342 TFPLWVN-------SELQ-MNLAVNNFKF 362 (866)
Q Consensus 342 ~~p~~~~-------~~~~-l~l~~N~~~~ 362 (866)
.....+. ..++ +.+..|.+..
T Consensus 412 ~g~~~l~~~l~~~~~~L~~l~l~~~~~~~ 440 (460)
T d1z7xw1 412 AGILQLVESVRQPGCLLEQLVLYDIYWSE 440 (460)
T ss_dssp HHHHHHHHHHTSTTCCCCEEECTTCCCCH
T ss_pred HHHHHHHHHHHhCCCccCEEECCCCCCCH
Confidence 5333221 1233 7777777654
|
| >d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.50 E-value=1.3e-15 Score=162.47 Aligned_cols=77 Identities=21% Similarity=0.251 Sum_probs=62.6
Q ss_pred CCCCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCC
Q 038019 640 GSKPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKS 719 (866)
Q Consensus 640 ~~~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~ 719 (866)
.+..|++...+...++.|||.++.+.... ....+||+.|||||++.+..++.++||||+||+++||+||+.||...
T Consensus 131 iKP~NILl~~~~~vkl~DFGla~~~~~~~----~~~~~GT~~Y~APEvl~~~~y~~~~DiWSlGvil~ell~G~~Pf~~~ 206 (322)
T d1s9ja_ 131 VKPSNILVNSRGEIKLCDFGVSGQLIDSM----ANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGRYPIPPP 206 (322)
T ss_dssp CSGGGEEECTTCCEEECCCCCCHHHHHHT----C---CCSSCCCCHHHHHCSCCCTTHHHHHHHHHHHHHHHSSCCSSCC
T ss_pred cCHHHeeECCCCCEEEeeCCCccccCCCc----cccccCCccccCchHHcCCCCCcHHHHHHHHHHHHHHHHCCCCCCCC
Confidence 33347777777788999999998775432 22457999999999999999999999999999999999999999754
Q ss_pred c
Q 038019 720 L 720 (866)
Q Consensus 720 ~ 720 (866)
.
T Consensus 207 ~ 207 (322)
T d1s9ja_ 207 D 207 (322)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: G-protein coupled receptor kinase 2 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.48 E-value=4.7e-15 Score=160.48 Aligned_cols=128 Identities=16% Similarity=0.128 Sum_probs=86.6
Q ss_pred ccCCCCCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecC-CCCchhHHHHHHHHHHHHHhcCCC
Q 038019 637 VGIGSKPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRG-HLTEKADVFSFGVVALEIISGRAS 715 (866)
Q Consensus 637 ~~~~~~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~-~~t~ksDVySfGvvLlEl~tg~~p 715 (866)
|+.....|++..++...++.|||+++.++.+... ...||+.|||||++..+ .++.++|||||||+|+||+||+.|
T Consensus 130 HrDlKP~NILl~~~g~iKl~DFGla~~~~~~~~~----~~~GT~~y~APE~~~~~~~~~~~~DiwSlGvilyemltG~~P 205 (364)
T d1omwa3 130 YRDLKPANILLDEHGHVRISDLGLACDFSKKKPH----ASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSP 205 (364)
T ss_dssp CCCCSGGGEEECSSSCEEECCCTTCEECSSSCCC----SCCSCGGGCCHHHHSTTCCCCTHHHHHHHHHHHHHHHHSSCS
T ss_pred ceeeccceeEEcCCCcEEEeeeceeeecCCCccc----ccccccccchhHHhhcCCCCCcccchhHHHHHHHHHHhCCCC
Confidence 3333334777777777889999999988765432 34699999999998754 689999999999999999999999
Q ss_pred CCCCchhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCH-----HHHH
Q 038019 716 SDKSLDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPM-----SRVV 781 (866)
Q Consensus 716 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm-----~~V~ 781 (866)
|......+. . .+...... ..+.+.....++ +.++...|++.||++|||+ .|+.
T Consensus 206 f~~~~~~~~---~-~~~~~~~~------~~~~~~~~~s~~---~~~li~~~L~~dP~~R~t~~~~~a~eil 263 (364)
T d1omwa3 206 FRQHKTKDK---H-EIDRMTLT------MAVELPDSFSPE---LRSLLEGLLQRDVNRRLGCLGRGAQEVK 263 (364)
T ss_dssp SCSSCSSCH---H-HHHHHSSS------CCCCCCSSSCHH---HHHHHHHHTCSSTTTSTTTSSSTHHHHH
T ss_pred CCCCCHHHH---H-HHHHhccc------CCCCCCCCCCHH---HHHHHHHHcccCHHHhCCCcccCHHHHH
Confidence 975433221 1 11111110 111111112223 4455569999999999994 6665
|
| >d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Mycobacterial protein kinase PknB, catalytic domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.48 E-value=4.8e-15 Score=154.63 Aligned_cols=132 Identities=20% Similarity=0.245 Sum_probs=83.2
Q ss_pred CCcccCHHHHHHHhcCCccccccCCCCc-eeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCCc
Q 038019 642 KPNIFGYAELRSATKDFNRSNKLGEGGY-GPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSL 720 (866)
Q Consensus 642 ~~~~~~~~~~~~~~~dF~~~~~lg~g~~-g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~ 720 (866)
..|++...+...++.||+....+..+.. ........||+.|||||.+.+..++.++|||||||+++||+||+.||....
T Consensus 139 P~NIll~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~Gt~~Y~aPE~~~~~~~~~~~DiwSlGvilyelltG~~Pf~~~~ 218 (277)
T d1o6ya_ 139 PANIMISATNAVKVMDFGIARAIADSGNSVTQTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGDS 218 (277)
T ss_dssp GGGEEEETTSCEEECCCTTCEECC----------------TTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSS
T ss_pred CcccccCccccceeehhhhhhhhccccccccccccccCcccccCHHHHcCCCCCcceecccchHHHHHHHhCCCCCCCcC
Confidence 3467666666677889998876654332 223345579999999999999999999999999999999999999997543
Q ss_pred hhhhhcHHHHHHHHhhcCCcccccCCcc-cccCHHHHHHHHHHHHHccCCCCCCCC-CHHHHHHHHhc
Q 038019 721 DMEKIYLLEWAWNLHENNQSFGLVDPTL-TEFNDKEALRVIGVALLCTQTSPMMRP-PMSRVVAMLAG 786 (866)
Q Consensus 721 ~~~~~~l~~~~~~~~~~~~~~~~~d~~l-~~~~~~~~~~~~~la~~C~~~~p~~RP-sm~~V~~~L~~ 786 (866)
..+ ........+.. .+.. .....+ .+.++..+|++.||++|| |++++.+.|..
T Consensus 219 ~~~------~~~~~~~~~~~----~~~~~~~~~s~---~l~~li~~~L~~dp~~R~~sa~~l~~~l~r 273 (277)
T d1o6ya_ 219 PVS------VAYQHVREDPI----PPSARHEGLSA---DLDAVVLKALAKNPENRYQTAAEMRADLVR 273 (277)
T ss_dssp HHH------HHHHHHHCCCC----CGGGTSSSCCH---HHHHHHHHHTCSSGGGSCSSHHHHHHHHHH
T ss_pred HHH------HHHHHHhcCCC----CCchhccCCCH---HHHHHHHHHccCCHhHCHhHHHHHHHHHHH
Confidence 322 12222222211 1111 111122 344556699999999999 89999888864
|
| >d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Twitchin, kinase domain species: Caenorhabditis elegans, pjk4 [TaxId: 6239]
Probab=99.48 E-value=1.1e-14 Score=156.54 Aligned_cols=125 Identities=19% Similarity=0.134 Sum_probs=86.3
Q ss_pred cccCH--HHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCCch
Q 038019 644 NIFGY--AELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSLD 721 (866)
Q Consensus 644 ~~~~~--~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~ 721 (866)
|++.. .+...++.|||.++.++.... .....||+.|||||++.+..++.++||||+||+++||+||+.|+.....
T Consensus 154 NIll~~~~~~~vkL~DFG~a~~~~~~~~---~~~~~gT~~Y~aPEv~~~~~~~~~~DiwSlGvilyell~G~~Pf~~~~~ 230 (350)
T d1koaa2 154 NIMFTTKRSNELKLIDFGLTAHLDPKQS---VKVTTGTAEFAAPEVAEGKPVGYYTDMWSVGVLSYILLSGLSPFGGEND 230 (350)
T ss_dssp GEEESSTTSCCEEECCCTTCEECCTTSC---EEEECSCTTTCCHHHHHTCCBCHHHHHHHHHHHHHHHHHSSCSSCCSSH
T ss_pred HeeeccCCCCeEEEeecchheecccccc---cceecCcccccCHHHHcCCCCChhHhhhhhhHHHHHHHhCCCCCCCCCH
Confidence 55442 234568999999999876543 3456789999999999999999999999999999999999999975433
Q ss_pred hhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 038019 722 MEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAM 783 (866)
Q Consensus 722 ~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~ 783 (866)
.+ +..-+ . .+.. ..++.......++ +.++..+|++.||++|||+.|+++.
T Consensus 231 ~~---~~~~i---~-~~~~--~~~~~~~~~~s~~---~~~li~~~L~~dP~~R~t~~eil~h 280 (350)
T d1koaa2 231 DE---TLRNV---K-SCDW--NMDDSAFSGISED---GKDFIRKLLLADPNTRMTIHQALEH 280 (350)
T ss_dssp HH---HHHHH---H-HTCC--CSCCGGGGGCCHH---HHHHHHHHCCSSGGGSCCHHHHHHS
T ss_pred HH---HHHHH---H-hCCC--CCCcccccCCCHH---HHHHHHHHccCChhHCcCHHHHhcC
Confidence 22 11111 1 1111 0111111111223 4455669999999999999999763
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.47 E-value=2.1e-14 Score=136.27 Aligned_cols=110 Identities=15% Similarity=0.129 Sum_probs=55.4
Q ss_pred cCCCCCCCEEEccCCCCCCCCCccccCCCCcCEEeccCCcCCCCCCccccCCCCCCEeeccCCCCCCCCchhhcCCCCcc
Q 038019 85 LVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKELTVLAFGTNNFSGALPPELGNLAKLE 164 (866)
Q Consensus 85 l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~ 164 (866)
+.++..|++|||++|+|+. ++..+..+++|++|+|++|+|+. + +.|..+++|++|+|++|+++...+..+..+++|+
T Consensus 14 ~~n~~~lr~L~L~~n~I~~-i~~~~~~l~~L~~L~Ls~N~i~~-l-~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~ 90 (162)
T d1a9na_ 14 YTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRK-L-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT 90 (162)
T ss_dssp EECTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCE-E-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred ccCcCcCcEEECCCCCCCc-cCccccccccCCEEECCCCCCCc-c-CCcccCcchhhhhcccccccCCCccccccccccc
Confidence 4455566666666666653 34444556666666666666652 2 2355555555666555555543333334445555
Q ss_pred EEEeecCCCCCCCh-hhhhcCcCCCEEEecCCCC
Q 038019 165 QLYIDSCGAGGEIP-STFAKLRNMQTLWASDNPF 197 (866)
Q Consensus 165 ~L~L~~n~l~~~~p-~~~~~l~~L~~L~L~~N~l 197 (866)
+|+|++|+++.... ..+..+++|++|++++|.+
T Consensus 91 ~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i 124 (162)
T d1a9na_ 91 ELILTNNSLVELGDLDPLASLKSLTYLCILRNPV 124 (162)
T ss_dssp EEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGG
T ss_pred cceeccccccccccccccccccccchhhcCCCcc
Confidence 55555554433211 2233444444444444433
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.47 E-value=8.5e-14 Score=125.61 Aligned_cols=102 Identities=22% Similarity=0.285 Sum_probs=64.2
Q ss_pred CEEEccCCCCCCCCCccccCCCCcCEEeccCCcCCCCCCccccCCCCCCEeeccCCCCCCCCchhhcCCCCccEEEeecC
Q 038019 92 TVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKELTVLAFGTNNFSGALPPELGNLAKLEQLYIDSC 171 (866)
Q Consensus 92 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n 171 (866)
|+|+|++|+++ .++ .+.++++|++|+|++|+|+ .+|..|+.+++|++|++++|.++.. | .++.+++|++|++++|
T Consensus 1 R~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~l-~-~~~~l~~L~~L~l~~N 75 (124)
T d1dcea3 1 RVLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENV-D-GVANLPRLQELLLCNN 75 (124)
T ss_dssp SEEECTTSCCS-SCC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCC-G-GGTTCSSCCEEECCSS
T ss_pred CEEEcCCCCCC-CCc-ccccCCCCCEEECCCCccC-cchhhhhhhhccccccccccccccc-C-ccccccccCeEECCCC
Confidence 46777777776 333 3667777777777777776 4566667777777777777777643 2 4666666666666666
Q ss_pred CCCCCC-hhhhhcCcCCCEEEecCCCCC
Q 038019 172 GAGGEI-PSTFAKLRNMQTLWASDNPFT 198 (866)
Q Consensus 172 ~l~~~~-p~~~~~l~~L~~L~L~~N~l~ 198 (866)
+++... ...+..+++|+.|++++|.++
T Consensus 76 ~i~~~~~~~~l~~~~~L~~L~l~~N~i~ 103 (124)
T d1dcea3 76 RLQQSAAIQPLVSCPRLVLLNLQGNSLC 103 (124)
T ss_dssp CCCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred ccCCCCCchhhcCCCCCCEEECCCCcCC
Confidence 665432 244556666666666666554
|
| >d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Twitchin, kinase domain species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]
Probab=99.46 E-value=7.2e-15 Score=158.10 Aligned_cols=125 Identities=20% Similarity=0.168 Sum_probs=87.0
Q ss_pred CcccCH--HHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCCc
Q 038019 643 PNIFGY--AELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSL 720 (866)
Q Consensus 643 ~~~~~~--~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~ 720 (866)
.|++.. .+...++.|||++..+..+.. .....||+.|||||++.+..++.++||||+||+++||+||+.||....
T Consensus 156 ~NILl~~~~~~~vkL~DFGla~~~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvilyelltG~~Pf~~~~ 232 (352)
T d1koba_ 156 ENIMCETKKASSVKIIDFGLATKLNPDEI---VKVTTATAEFAAPEIVDREPVGFYTDMWAIGVLGYVLLSGLSPFAGED 232 (352)
T ss_dssp GGEEESSTTCCCEEECCCTTCEECCTTSC---EEEECSSGGGCCHHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSCCSS
T ss_pred ccccccccCCCeEEEeecccceecCCCCc---eeeccCcccccCHHHHcCCCCCCccchHHHHHHHHHHHhCCCCCCCCC
Confidence 355543 334567899999999887643 445678999999999999999999999999999999999999997543
Q ss_pred hhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 721 DMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 721 ~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
..+ +...+. .+.. ...+........ .+.++...|++.||++|||+.|+++
T Consensus 233 ~~~---~~~~i~----~~~~--~~~~~~~~~~s~---~~~~li~~~L~~dp~~R~s~~eil~ 282 (352)
T d1koba_ 233 DLE---TLQNVK----RCDW--EFDEDAFSSVSP---EAKDFIKNLLQKEPRKRLTVHDALE 282 (352)
T ss_dssp HHH---HHHHHH----HCCC--CCCSSTTTTSCH---HHHHHHHTTSCSSGGGSCCHHHHHT
T ss_pred HHH---HHHHHH----hCCC--CCCcccccCCCH---HHHHHHHHHccCChhHCcCHHHHhc
Confidence 322 222111 1111 011111111122 3445666999999999999999976
|
| >d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Protein kinase C, theta type species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.46 E-value=4.6e-15 Score=157.71 Aligned_cols=127 Identities=18% Similarity=0.193 Sum_probs=88.8
Q ss_pred ccCCCCCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCC
Q 038019 637 VGIGSKPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASS 716 (866)
Q Consensus 637 ~~~~~~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~ 716 (866)
|+.....|++..++...++.|||.++.+..... ......||+.|||||.+.++.++.|+|||||||+++||+||+.|+
T Consensus 126 HrDikp~NiL~~~~~~~kl~DFG~a~~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvilyemltG~~PF 203 (320)
T d1xjda_ 126 YRDLKLDNILLDKDGHIKIADFGMCKENMLGDA--KTNTFCGTPDYIAPEILLGQKYNHSVDWWSFGVLLYEMLIGQSPF 203 (320)
T ss_dssp CCCCCGGGEEECTTSCEEECCCTTCBCCCCTTC--CBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSS
T ss_pred eccCcccceeecCCCceeccccchhhhcccccc--cccccCCCCCcCCHHHHcCCCCCchhhhhhhhHHHHHHHhCCCCC
Confidence 333333477776767788999999987764432 233457999999999999999999999999999999999999999
Q ss_pred CCCchhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHH-HHH
Q 038019 717 DKSLDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMS-RVV 781 (866)
Q Consensus 717 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~-~V~ 781 (866)
......+ +. .....+ ++.......++ +.++..+|++.||++||++. ||.
T Consensus 204 ~~~~~~~---~~----~~i~~~------~~~~p~~~s~~---~~dli~~~L~~dP~~R~s~~~~l~ 253 (320)
T d1xjda_ 204 HGQDEEE---LF----HSIRMD------NPFYPRWLEKE---AKDLLVKLFVREPEKRLGVRGDIR 253 (320)
T ss_dssp CCSSHHH---HH----HHHHHC------CCCCCTTSCHH---HHHHHHHHSCSSGGGSBTTBSCGG
T ss_pred CCCCHHH---HH----HHHHcC------CCCCCccCCHH---HHHHHHHhcccCCCCCcCHHHHHH
Confidence 7543322 11 112111 12222222233 44556699999999999985 664
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.46 E-value=4.5e-14 Score=134.02 Aligned_cols=130 Identities=14% Similarity=0.100 Sum_probs=104.9
Q ss_pred cccCCCCcCEEeccCCcCCCCCCccccCCCCCCEeeccCCCCCCCCchhhcCCCCccEEEeecCCCCCCChhhhhcCcCC
Q 038019 108 FIGNLSRLMFLSFSHNDFSGPVPRELGNLKELTVLAFGTNNFSGALPPELGNLAKLEQLYIDSCGAGGEIPSTFAKLRNM 187 (866)
Q Consensus 108 ~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L 187 (866)
.|.++.+|++|+|++|+|+. ++..+..+++|++|+|++|.++.. +.+..+++|++|+|++|+++...+..+..+++|
T Consensus 13 ~~~n~~~lr~L~L~~n~I~~-i~~~~~~l~~L~~L~Ls~N~i~~l--~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L 89 (162)
T d1a9na_ 13 QYTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 89 (162)
T ss_dssp EEECTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred hccCcCcCcEEECCCCCCCc-cCccccccccCCEEECCCCCCCcc--CCcccCcchhhhhcccccccCCCcccccccccc
Confidence 36788899999999999984 577778899999999999999844 358889999999999999988777778889999
Q ss_pred CEEEecCCCCCCCCc-ccccCCCCCCeEEccCCCCCCCC---chhhcCCCCCCEEEc
Q 038019 188 QTLWASDNPFTGKIP-DFIGNWTKLKSLRFQGNSFQGPI---PSSLSKLASLESLQM 240 (866)
Q Consensus 188 ~~L~L~~N~l~~~~p-~~l~~l~~L~~L~L~~N~l~~~~---p~~~~~l~~L~~L~l 240 (866)
++|++++|+++.... ..+..+++|++|++++|.++... +..+..+++|+.|+.
T Consensus 90 ~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD~ 146 (162)
T d1a9na_ 90 TELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDF 146 (162)
T ss_dssp CEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETT
T ss_pred ccceeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeCC
Confidence 999999999985322 46778899999999999887432 234666777777653
|
| >d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: cAMP-dependent PK, catalytic subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.46 E-value=1.5e-14 Score=153.37 Aligned_cols=127 Identities=18% Similarity=0.203 Sum_probs=89.4
Q ss_pred hhccCCCCCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCC
Q 038019 635 VLVGIGSKPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRA 714 (866)
Q Consensus 635 ~~~~~~~~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~ 714 (866)
++|+.....|++...+...++.|||.++.+..... ...||+.|||||.+.+..++.++||||+||+++||+||+.
T Consensus 125 iiHrDiKp~NILl~~~g~vkL~DFG~a~~~~~~~~-----~~~Gt~~Y~APE~l~~~~y~~~~DiwSlGvilyemltG~~ 199 (316)
T d1fota_ 125 IIYRDLKPENILLDKNGHIKITDFGFAKYVPDVTY-----TLCGTPDYIAPEVVSTKPYNKSIDWWSFGILIYEMLAGYT 199 (316)
T ss_dssp EECCCCCGGGEEECTTSCEEECCCSSCEECSSCBC-----CCCSCTTTCCHHHHTTCCBCTTHHHHHHHHHHHHHHHSSC
T ss_pred EEccccCchheeEcCCCCEEEecCccceEeccccc-----cccCcccccCHHHHcCCCCCchhhccccchhHHHHHhCCC
Confidence 33433344477777777889999999998875432 3579999999999999999999999999999999999999
Q ss_pred CCCCCchhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCC-----CHHHHHH
Q 038019 715 SSDKSLDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRP-----PMSRVVA 782 (866)
Q Consensus 715 p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RP-----sm~~V~~ 782 (866)
|+......+ +.. ... .+. ........++ +.++..+|++.||.+|| |+.|+++
T Consensus 200 Pf~~~~~~~---~~~---~i~-~~~------~~~p~~~s~~---~~~li~~~L~~dp~~R~~~~r~t~~~il~ 256 (316)
T d1fota_ 200 PFYDSNTMK---TYE---KIL-NAE------LRFPPFFNED---VKDLLSRLITRDLSQRLGNLQNGTEDVKN 256 (316)
T ss_dssp TTCCSSHHH---HHH---HHH-HCC------CCCCTTSCHH---HHHHHHHHTCSCTTTCTTSSTTTTHHHHT
T ss_pred CCCCcCHHH---HHH---HHH-cCC------CCCCCCCCHH---HHHHHHHHhhhCHHhccccchhhHHHHHc
Confidence 997643322 111 111 111 1111111223 44555699999999996 7888764
|
| >d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: MAP kinase activated protein kinase 2, mapkap2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.45 E-value=1e-14 Score=155.98 Aligned_cols=119 Identities=13% Similarity=0.083 Sum_probs=80.9
Q ss_pred HHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCCchhhhhcHHHHH
Q 038019 652 RSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSLDMEKIYLLEWA 731 (866)
Q Consensus 652 ~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~~~~~~l~~~~ 731 (866)
..++.|||.++.+..+... ....||+.|||||++.+..++.|+|||||||+++||+||+.||....... .....
T Consensus 152 ~~Kl~DFG~a~~~~~~~~~---~~~~gt~~y~aPE~~~~~~y~~~~DiwSlGvily~lltg~~Pf~~~~~~~---~~~~~ 225 (335)
T d2ozaa1 152 ILKLTDFGFAKETTSHNSL---TTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLA---ISPGM 225 (335)
T ss_dssp CEEECCCTTCEECCCCCCC---CCCSCCCSSCCCCCCCGGGGSHHHHHHHHHHHHHHHTTSSCSCEETTCC---------
T ss_pred cccccccceeeeccCCCcc---ccccCCcccCCcHHHcCCCCCHHHHHHhhchhHHHHhhCCCCCCCCCHHH---HHHHH
Confidence 4679999999988765432 23479999999999999999999999999999999999999996433211 11111
Q ss_pred HHHhhcCCcccccCCcccc-cCHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 732 WNLHENNQSFGLVDPTLTE-FNDKEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 732 ~~~~~~~~~~~~~d~~l~~-~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
......+. ..... ........+.++...|++.||++|||+.|+++
T Consensus 226 ~~~i~~~~------~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~s~~eil~ 271 (335)
T d2ozaa1 226 KTRIRMGQ------YEFPNPEWSEVSEEVKMLIRNLLKTEPTQRMTITEFMN 271 (335)
T ss_dssp --CCCSCS------SSCCTTHHHHSCHHHHHHHHHHSCSSTTTSCCHHHHHH
T ss_pred HHHHhcCC------CCCCCcccccCCHHHHHHHHHHccCChhHCcCHHHHHc
Confidence 11111110 01110 01111234556777999999999999999987
|
| >d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Cell division protein kinase 7, CDK7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.45 E-value=4.2e-14 Score=149.15 Aligned_cols=137 Identities=13% Similarity=0.127 Sum_probs=89.2
Q ss_pred CCCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecC-CCCchhHHHHHHHHHHHHHhcCCCCCCC
Q 038019 641 SKPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRG-HLTEKADVFSFGVVALEIISGRASSDKS 719 (866)
Q Consensus 641 ~~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~-~~t~ksDVySfGvvLlEl~tg~~p~~~~ 719 (866)
...|++...+...++.|||.++.+..... .....+||+.|||||.+..+ .++.|+|||||||+++||+||+.|+...
T Consensus 127 Kp~NIli~~~~~~KL~DFG~a~~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlGvil~el~~g~~pf~~~ 204 (299)
T d1ua2a_ 127 KPNNLLLDENGVLKLADFGLAKSFGSPNR--AYTHQVVTRWYRAPELLFGARMYGVGVDMWAVGCILAELLLRVPFLPGD 204 (299)
T ss_dssp CGGGEEECTTCCEEECCCGGGSTTTSCCC--CCCCSCCCCTTCCHHHHTTCSCCCHHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred CcceEEecCCCccccccCccccccCCCcc--cccceecChhhccHHHHccCCCCChhhhhhhcchHHHHHHhCcCCCCCC
Confidence 33477777777788999999988876432 22344789999999998754 5799999999999999999999999765
Q ss_pred chhhhhcHHHHHHHHhhc---CCccccc---C----CcccccCHH-----HHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 720 LDMEKIYLLEWAWNLHEN---NQSFGLV---D----PTLTEFNDK-----EALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 720 ~~~~~~~l~~~~~~~~~~---~~~~~~~---d----~~l~~~~~~-----~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
...+ ....+.+.... ....... + ......+.. ....+.++..+|++.||++|||+.|+++
T Consensus 205 ~~~~---~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dll~~~L~~dP~~R~sa~e~L~ 279 (299)
T d1ua2a_ 205 SDLD---QLTRIFETLGTPTEEQWPDMCSLPDYVTFKSFPGIPLHHIFSAAGDDLLDLIQGLFLFNPCARITATQALK 279 (299)
T ss_dssp SHHH---HHHHHHHHHCCCCTTTSSSTTSSTTCCCCCCCCCCCHHHHCTTCCHHHHHHHHHHHCSSTTTSCCHHHHHT
T ss_pred CHHH---HHHHHHHhcCCCChhhccchhccchhhhhccCCCCChHHhcccCCHHHHHHHHHHccCChhhCcCHHHHhC
Confidence 4332 22222222110 0000000 0 000011111 1134566777999999999999999875
|
| >d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Death-associated protein kinase, Dap species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.45 E-value=6.1e-15 Score=155.07 Aligned_cols=115 Identities=17% Similarity=0.148 Sum_probs=80.5
Q ss_pred HHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCCchhhhhcHHHHHH
Q 038019 653 SATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSLDMEKIYLLEWAW 732 (866)
Q Consensus 653 ~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~~~~~~l~~~~~ 732 (866)
.++.|||.++.+..+.. .....||+.|||||.+.+..++.|+|||||||+++||+||+.|+......+ ....
T Consensus 156 vkl~DfG~a~~~~~~~~---~~~~~~t~~y~APE~~~~~~~~~~~DiwSlGvilyell~g~~Pf~~~~~~~---~~~~-- 227 (293)
T d1jksa_ 156 IKIIDFGLAHKIDFGNE---FKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQE---TLAN-- 227 (293)
T ss_dssp EEECCCTTCEECTTSCB---CSCCCCCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHH---HHHH--
T ss_pred eEecchhhhhhcCCCcc---ccccCCCCcccCHHHHcCCCCCCcccchhhhHHHHHHHcCCCCCCCCCHHH---HHHH--
Confidence 57899999988866543 345578999999999999999999999999999999999999997544322 1111
Q ss_pred HHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 733 NLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 733 ~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
...+... ..+....... ..+.++...|++.||++|||+.|+++
T Consensus 228 --i~~~~~~--~~~~~~~~~s---~~~~~li~~~L~~dP~~R~s~~eil~ 270 (293)
T d1jksa_ 228 --VSAVNYE--FEDEYFSNTS---ALAKDFIRRLLVKDPKKRMTIQDSLQ 270 (293)
T ss_dssp --HHTTCCC--CCHHHHTTSC---HHHHHHHHTTSCSSGGGSCCHHHHHH
T ss_pred --HHhcCCC--CCchhcCCCC---HHHHHHHHHHccCChhHCcCHHHHhc
Confidence 1111110 0000101111 23445666999999999999999875
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.44 E-value=7.8e-15 Score=153.52 Aligned_cols=248 Identities=17% Similarity=0.210 Sum_probs=138.7
Q ss_pred EEEEcccCcCCCCCcccCCCCCCCEEEccCCCCCCCCCccccCCCCcCEEeccCCcCCCC-CCccccCCCCCCEeeccCC
Q 038019 69 KLRVYGLNKKGVIPEELVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGP-VPRELGNLKELTVLAFGTN 147 (866)
Q Consensus 69 ~L~l~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~L~Ls~N 147 (866)
+||++++++.......+.. ..+..+.++...+...+ .......+|++|||++|.++.. +...+.++++|++|+|++|
T Consensus 4 ~lDLs~~~l~~~~l~~l~~-~~~~~lrl~~~~~~~~~-~~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~ 81 (284)
T d2astb2 4 TLDLTGKNLHPDVTGRLLS-QGVIAFRCPRSFMDQPL-AEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGL 81 (284)
T ss_dssp EEECTTCBCCHHHHHHHHH-TTCSEEECTTCEECSCC-CSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTC
T ss_pred EEECCCCCCCchHHHHHHh-ccceEeeccccccccch-hhhccCCCCCEEECCCCccCHHHHHHHHHhCCCccccccccc
Confidence 4566655543222222211 13445555555443222 2233455677777777766532 2334566777777777777
Q ss_pred CCCCCCchhhcCCCCccEEEeecC-CCCCC-ChhhhhcCcCCCEEEecCC-CCCCC-Cccccc-CCCCCCeEEccCCC--
Q 038019 148 NFSGALPPELGNLAKLEQLYIDSC-GAGGE-IPSTFAKLRNMQTLWASDN-PFTGK-IPDFIG-NWTKLKSLRFQGNS-- 220 (866)
Q Consensus 148 ~l~~~~p~~l~~l~~L~~L~L~~n-~l~~~-~p~~~~~l~~L~~L~L~~N-~l~~~-~p~~l~-~l~~L~~L~L~~N~-- 220 (866)
.+++..+..++.+++|++|+|++| .++.. +...+..+++|++|+++++ .++.. +...+. ..++|+.|+++++.
T Consensus 82 ~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 161 (284)
T d2astb2 82 RLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKN 161 (284)
T ss_dssp BCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGG
T ss_pred CCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhcccccccchhhhcccccc
Confidence 776666666777777777777764 34321 2223446677777777765 33321 112222 23567777777542
Q ss_pred CCCC-CchhhcCCCCCCEEEccCcc-CCCCCchhhhcCCCCCceeccCc-ccccCCCcccCCCCCcCEEeeecCcCcc-c
Q 038019 221 FQGP-IPSSLSKLASLESLQMSDIY-NVSSSLDFVMSLKNLTDLSLRNA-LITGTIPFGIGELQMLQILDLSFNNLTG-Q 296 (866)
Q Consensus 221 l~~~-~p~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~p~~~~~l~~L~~L~Ls~N~l~~-~ 296 (866)
++.. +...+.++++|+.|++++|. +.......+..+++|++|+|++| .+++.....++.+++|+.|+++++ ++. .
T Consensus 162 i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~-~~d~~ 240 (284)
T d2astb2 162 LQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGT 240 (284)
T ss_dssp SCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTC
T ss_pred cccccccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC-CCHHH
Confidence 3321 22334567778888887754 34445556677778888888774 566655556777888888888776 332 2
Q ss_pred CCcccCCCCCCcEEECcCCCCcccCC
Q 038019 297 IPATLFNIDSLEYLFLGNNSLSGTLP 322 (866)
Q Consensus 297 ~p~~l~~l~~L~~L~L~~N~l~g~~p 322 (866)
+......+|+|+ +..+.++...+
T Consensus 241 l~~l~~~lp~L~---i~~~~ls~~~~ 263 (284)
T d2astb2 241 LQLLKEALPHLQ---INCSHFTTIAR 263 (284)
T ss_dssp HHHHHHHSTTSE---ESCCCSCCTTC
T ss_pred HHHHHHhCcccc---ccCccCCCCCC
Confidence 222223355554 46666665433
|
| >d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Casein kinase-1, CK1 species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.44 E-value=1.5e-14 Score=151.96 Aligned_cols=130 Identities=9% Similarity=0.012 Sum_probs=86.7
Q ss_pred HHHHhcCCccccccCCCCcee-----EEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCCchhhhh
Q 038019 651 LRSATKDFNRSNKLGEGGYGP-----VYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSLDMEKI 725 (866)
Q Consensus 651 ~~~~~~dF~~~~~lg~g~~g~-----vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~~~~~ 725 (866)
...++.|||.++.+....-+. ......||+.|||||.+.+..++.++|||||||+++||+||+.|+.........
T Consensus 143 ~~vkl~DFG~a~~~~~~~~~~~~~~~~~~~~~GT~~y~aPE~~~~~~~~~~~DiwSlG~~l~elltg~~Pf~~~~~~~~~ 222 (293)
T d1csna_ 143 NMIYVVDFGMVKFYRDPVTKQHIPYREKKNLSGTARYMSINTHLGREQSRRDDLEALGHVFMYFLRGSLPWQGLKAATNK 222 (293)
T ss_dssp TCEEECCCTTCEESBCTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCSCCHH
T ss_pred CceEEcccceeEEcccCccccceeecccCceEEchhhcCHHHhcCCCCChHHHHHHhhHHHHHHHhCCCcCCCccchhHH
Confidence 446789999998876432221 123457999999999999999999999999999999999999999754433222
Q ss_pred cHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhcCc
Q 038019 726 YLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLAGDI 788 (866)
Q Consensus 726 ~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~~L~~~~ 788 (866)
.....+..........++ - ...+ + ++.++...|++.+|++||+++.+.+.|+...
T Consensus 223 ~~~~~i~~~~~~~~~~~l-~---~~~p-~---~l~~ii~~~~~~~~~~rP~y~~l~~~l~~~~ 277 (293)
T d1csna_ 223 QKYERIGEKKQSTPLREL-C---AGFP-E---EFYKYMHYARNLAFDATPDYDYLQGLFSKVL 277 (293)
T ss_dssp HHHHHHHHHHHHSCHHHH-T---TTSC-H---HHHHHHHHHHHCCTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCChHHh-c---CCCC-H---HHHHHHHHHhcCCcccCcCHHHHHHHHHHHH
Confidence 222222211110000000 0 1122 2 3445556899999999999999988887543
|
| >d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Pkb kinase (Akt-2) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.44 E-value=2.6e-14 Score=152.66 Aligned_cols=128 Identities=18% Similarity=0.133 Sum_probs=88.2
Q ss_pred ccCCCCCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCC
Q 038019 637 VGIGSKPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASS 716 (866)
Q Consensus 637 ~~~~~~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~ 716 (866)
|+.....|++.+++...++.|||.++.+...+ ......+||+.|||||.+.+..++.++||||+||+++||+||+.|+
T Consensus 128 HRDlKP~NILl~~~g~vkl~DFG~a~~~~~~~--~~~~~~~GT~~Y~aPE~~~~~~y~~~~DiwSlGvilyeml~G~~pf 205 (337)
T d1o6la_ 128 YRDIKLENLMLDKDGHIKITDFGLCKEGISDG--ATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPF 205 (337)
T ss_dssp CCCCCGGGEEECTTSCEEECCCTTCBCSCCTT--CCBCCCEECGGGCCGGGGSSSCBCTTHHHHHHHHHHHHHHHSSCSS
T ss_pred ccccCHHHeEecCCCCEEEeecccccccccCC--cccccceeCHHHhhhhhccCCCCChhhcccchhhHHHHHHHCCCCC
Confidence 33333347777777788999999998775432 1223457999999999999999999999999999999999999999
Q ss_pred CCCchhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCC-----HHHHHH
Q 038019 717 DKSLDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPP-----MSRVVA 782 (866)
Q Consensus 717 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPs-----m~~V~~ 782 (866)
......+ +.+. ...+. +.++.....+ +.++...|++.||++||+ ..|+.+
T Consensus 206 ~~~~~~~---~~~~----i~~~~------~~~p~~~s~~---~~dli~~~L~~dP~~R~~~~~~~~~eil~ 260 (337)
T d1o6la_ 206 YNQDHER---LFEL----ILMEE------IRFPRTLSPE---AKSLLAGLLKKDPKQRLGGGPSDAKEVME 260 (337)
T ss_dssp CCSSHHH---HHHH----HHHCC------CCCCTTSCHH---HHHHHHHHTCSSTTTSTTCSTTTHHHHHT
T ss_pred CCcCHHH---HHHH----HhcCC------CCCCccCCHH---HHHHHHhhccCCchhhcccccccHHHHHc
Confidence 7644322 2221 11111 1111111223 345566999999999995 666654
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.44 E-value=8.5e-15 Score=157.93 Aligned_cols=251 Identities=19% Similarity=0.174 Sum_probs=127.6
Q ss_pred CCcccCCCCCCCEEEccCCCCCCC----CCccccCCCCcCEEeccCCcCCCC----------CCccccCCCCCCEeeccC
Q 038019 81 IPEELVTLQYLTVLKIDQNFFTGP----LPSFIGNLSRLMFLSFSHNDFSGP----------VPRELGNLKELTVLAFGT 146 (866)
Q Consensus 81 ~p~~l~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~----------~p~~l~~l~~L~~L~Ls~ 146 (866)
+...+.+...|+.|+|++|.+... +...+..+++|+.|+++++.+... +...+..+++|+.|+|++
T Consensus 23 l~~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~ 102 (344)
T d2ca6a1 23 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD 102 (344)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred HHHHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccc
Confidence 344566677788888888776532 233455667777777776654311 112244556666666666
Q ss_pred CCCCCCC----chhhcCCCCccEEEeecCCCCCCChhhhhcCcCCCEEEecCCCCCCCCcccccCCCCCCeEEccCCCCC
Q 038019 147 NNFSGAL----PPELGNLAKLEQLYIDSCGAGGEIPSTFAKLRNMQTLWASDNPFTGKIPDFIGNWTKLKSLRFQGNSFQ 222 (866)
Q Consensus 147 N~l~~~~----p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~ 222 (866)
|.++..- ...+..+++|++|++++|.++......+... |..+ .........+.|+.|.+++|.+.
T Consensus 103 n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~--l~~~---------~~~~~~~~~~~L~~l~l~~n~i~ 171 (344)
T d2ca6a1 103 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARA--LQEL---------AVNKKAKNAPPLRSIICGRNRLE 171 (344)
T ss_dssp CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHH--HHHH---------HHHHHHHTCCCCCEEECCSSCCT
T ss_pred cccccccccchhhhhcccccchheeccccccccccccccccc--cccc---------ccccccccCcccceeeccccccc
Confidence 6665432 2233445666666666665532111111000 0000 00000112334444444444443
Q ss_pred CC----CchhhcCCCCCCEEEccCccCCCCC-----chhhhcCCCCCceeccCcccccC----CCcccCCCCCcCEEeee
Q 038019 223 GP----IPSSLSKLASLESLQMSDIYNVSSS-----LDFVMSLKNLTDLSLRNALITGT----IPFGIGELQMLQILDLS 289 (866)
Q Consensus 223 ~~----~p~~~~~l~~L~~L~l~~n~~~~~~-----~~~~~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~Ls 289 (866)
.. +...+..++.|+.|++++|.+.... ...+...++|+.|+|++|.++.. +...+..+++|+.|+|+
T Consensus 172 ~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls 251 (344)
T d2ca6a1 172 NGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLN 251 (344)
T ss_dssp GGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECT
T ss_pred ccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhh
Confidence 21 1222334445555555554443211 11234456666666666665432 23345566777777777
Q ss_pred cCcCcccCCc----ccC--CCCCCcEEECcCCCCccc----CCc---ccCCCCCEEEeeCCCCCCc
Q 038019 290 FNNLTGQIPA----TLF--NIDSLEYLFLGNNSLSGT----LPD---QKSENLQKIDLSHNHLSGT 342 (866)
Q Consensus 290 ~N~l~~~~p~----~l~--~l~~L~~L~L~~N~l~g~----~p~---~~~~~L~~L~Ls~N~l~g~ 342 (866)
+|.|++.... .+. ..+.|++|+|++|+++.. +.. ...+.|+.|+|++|++...
T Consensus 252 ~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~~ 317 (344)
T d2ca6a1 252 DCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEE 317 (344)
T ss_dssp TCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTT
T ss_pred cCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCCc
Confidence 7777643222 222 235678888888877632 111 1235788888888888643
|
| >d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: cAMP-dependent PK, catalytic subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.43 E-value=2.4e-14 Score=153.92 Aligned_cols=126 Identities=12% Similarity=0.092 Sum_probs=87.7
Q ss_pred hccCCCCCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCC
Q 038019 636 LVGIGSKPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRAS 715 (866)
Q Consensus 636 ~~~~~~~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p 715 (866)
+|+.....|++...+...++.|||.++.+..... ...||+.|||||.+.+..++.++|||||||++|||+||+.|
T Consensus 163 iHRDIKP~NILl~~~g~ikL~DFG~a~~~~~~~~-----~~~Gt~~Y~APE~~~~~~~~~~~DiwSlGvilyemltG~~P 237 (350)
T d1rdqe_ 163 IYRDLKPENLLIDQQGYIQVTDFGFAKRVKGRTW-----TLCGTPEALAPEIILSKGYNKAVDWWALGVLIYEMAAGYPP 237 (350)
T ss_dssp ECCCCSGGGEEECTTSCEEECCCTTCEECSSCBC-----CCEECGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCS
T ss_pred ecCcCCHHHcccCCCCCEEeeeceeeeecccccc-----cccCccccCCHHHHcCCCCCccccccchhHHHHHHHhCCCC
Confidence 3333333477777777788999999998864322 34689999999999999999999999999999999999999
Q ss_pred CCCCchhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCC-----CHHHHHH
Q 038019 716 SDKSLDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRP-----PMSRVVA 782 (866)
Q Consensus 716 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RP-----sm~~V~~ 782 (866)
|...... .+...+. .+. +.......++ +.++...|++.||.+|+ |+.|+++
T Consensus 238 f~~~~~~---~~~~~i~----~~~------~~~p~~~s~~---~~~li~~~L~~dP~kR~~~~r~t~~ell~ 293 (350)
T d1rdqe_ 238 FFADQPI---QIYEKIV----SGK------VRFPSHFSSD---LKDLLRNLLQVDLTKRFGNLKNGVNDIKN 293 (350)
T ss_dssp SCCSSHH---HHHHHHH----HCC------CCCCTTCCHH---HHHHHHHHSCSCTTTCTTSSTTTTHHHHT
T ss_pred CCCcCHH---HHHHHHh----cCC------CCCCccCCHH---HHHHHHHHhhhCHHhccccccccHHHHHc
Confidence 9754321 1222111 111 1111111223 44555699999999994 8888864
|
| >d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Proto-oncogene serine/threonine-protein kinase Pim-1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.43 E-value=9.6e-15 Score=151.82 Aligned_cols=120 Identities=18% Similarity=0.218 Sum_probs=83.5
Q ss_pred ccCCCCCcccCHH-HHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCC-CchhHHHHHHHHHHHHHhcCC
Q 038019 637 VGIGSKPNIFGYA-ELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHL-TEKADVFSFGVVALEIISGRA 714 (866)
Q Consensus 637 ~~~~~~~~~~~~~-~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~-t~ksDVySfGvvLlEl~tg~~ 714 (866)
++.....|++... ....++.|||.++...... +....||+.|||||++....+ +.++||||+||+++||+||+.
T Consensus 133 HrDiKp~NIll~~~~~~vkl~DFG~a~~~~~~~----~~~~~GT~~y~aPE~~~~~~~~~~~~DiwSlGvilyell~g~~ 208 (273)
T d1xwsa_ 133 HRDIKDENILIDLNRGELKLIDFGSGALLKDTV----YTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDI 208 (273)
T ss_dssp CSCCSGGGEEEETTTTEEEECCCTTCEECCSSC----BCCCCSCGGGSCHHHHHHSCBCHHHHHHHHHHHHHHHHHHSSC
T ss_pred cccCcccceEEecCCCeEEECccccceeccccc----ccccccCCCcCCHHHHcCCCCCCcccccccceeeehhHhhCCC
Confidence 3333334676653 3567899999998876543 344679999999999987765 577899999999999999999
Q ss_pred CCCCCchhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 715 SSDKSLDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 715 p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
|+... + .. .. +.. .+.+. .+ ++ +.++..+|++.||++|||+.|+++
T Consensus 209 Pf~~~---~--~i-------~~-~~~--~~~~~---~s-~~---~~~li~~~L~~dp~~R~s~~eil~ 254 (273)
T d1xwsa_ 209 PFEHD---E--EI-------IR-GQV--FFRQR---VS-SE---CQHLIRWCLALRPSDRPTFEEIQN 254 (273)
T ss_dssp SCCSH---H--HH-------HH-CCC--CCSSC---CC-HH---HHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred CCCCc---h--HH-------hh-ccc--CCCCC---CC-HH---HHHHHHHHccCCHhHCcCHHHHhc
Confidence 98641 1 01 11 110 11111 12 23 445566999999999999999875
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.42 E-value=3.9e-13 Score=121.18 Aligned_cols=118 Identities=26% Similarity=0.300 Sum_probs=88.8
Q ss_pred CEEeccCCcCCCCCCccccCCCCCCEeeccCCCCCCCCchhhcCCCCccEEEeecCCCCCCChhhhhcCcCCCEEEecCC
Q 038019 116 MFLSFSHNDFSGPVPRELGNLKELTVLAFGTNNFSGALPPELGNLAKLEQLYIDSCGAGGEIPSTFAKLRNMQTLWASDN 195 (866)
Q Consensus 116 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N 195 (866)
|+|+|++|+++ .++ .+..+++|++|++++|.++ .+|+.++.+++|+.|++++|.++.. | .+..+++|++|++++|
T Consensus 1 R~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~l-~-~~~~l~~L~~L~l~~N 75 (124)
T d1dcea3 1 RVLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENV-D-GVANLPRLQELLLCNN 75 (124)
T ss_dssp SEEECTTSCCS-SCC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCC-G-GGTTCSSCCEEECCSS
T ss_pred CEEEcCCCCCC-CCc-ccccCCCCCEEECCCCccC-cchhhhhhhhccccccccccccccc-C-ccccccccCeEECCCC
Confidence 57899999998 444 4888899999999999987 5677888899999999999888764 3 4888888888888888
Q ss_pred CCCCCC-cccccCCCCCCeEEccCCCCCCC---CchhhcCCCCCCEE
Q 038019 196 PFTGKI-PDFIGNWTKLKSLRFQGNSFQGP---IPSSLSKLASLESL 238 (866)
Q Consensus 196 ~l~~~~-p~~l~~l~~L~~L~L~~N~l~~~---~p~~~~~l~~L~~L 238 (866)
+++... ...+..+++|+.|++++|+++.. ....+..+++|+.|
T Consensus 76 ~i~~~~~~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L 122 (124)
T d1dcea3 76 RLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 122 (124)
T ss_dssp CCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred ccCCCCCchhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence 887543 25677888888888888887632 22233345555544
|
| >d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Cell division protein kinase 9, CDK9 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.40 E-value=5.4e-14 Score=149.68 Aligned_cols=141 Identities=10% Similarity=0.052 Sum_probs=88.3
Q ss_pred CCcccCHHHHHHHhcCCccccccCCCCce--eEEEeecCCCCccCceeeecC-CCCchhHHHHHHHHHHHHHhcCCCCCC
Q 038019 642 KPNIFGYAELRSATKDFNRSNKLGEGGYG--PVYKVTANSYGYLAPEYAMRG-HLTEKADVFSFGVVALEIISGRASSDK 718 (866)
Q Consensus 642 ~~~~~~~~~~~~~~~dF~~~~~lg~g~~g--~vy~~~~gt~gY~aPE~~~~~-~~t~ksDVySfGvvLlEl~tg~~p~~~ 718 (866)
.-|++...+...++.|||.++.++..... ..+....||+.|+|||.+... .++.|+|||||||+++||+||+.|+..
T Consensus 145 p~NILl~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~gT~~Y~aPE~~~~~~~~~~k~DiwSlGvil~el~~g~~pf~~ 224 (318)
T d3blha1 145 AANVLITRDGVLKLADFGLARAFSLAKNSQPNRYTNRVVTLWYRPPELLLGERDYGPPIDLWGAGCIMAEMWTRSPIMQG 224 (318)
T ss_dssp GGGEEECTTSCEEECCCTTCEECCC-----CCCCCSCCSCGGGCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSCCC
T ss_pred chheeecCCCcEEeeecceeeecccccccccccccceecCHHHhhHHHHcCCCCCCcHHHcccCCceeeeHhhCCCCCCC
Confidence 34777777777899999999887743321 122334799999999998754 689999999999999999999999986
Q ss_pred CchhhhhcHHHHHHHHhhcCCcccccCCc----c-----cccCH-HH------HHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 719 SLDMEKIYLLEWAWNLHENNQSFGLVDPT----L-----TEFND-KE------ALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 719 ~~~~~~~~l~~~~~~~~~~~~~~~~~d~~----l-----~~~~~-~~------~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
....+........................ + ..... +. ...+.++..+|++.||++|||++|+++
T Consensus 225 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~R~sa~elL~ 304 (318)
T d3blha1 225 NTEQHQLALISQLCGSITPEVWPNVDNYELYEKLELVKGQKRKVKDRLKAYVRDPYALDLIDKLLVLDPAQRIDSDDALN 304 (318)
T ss_dssp SSHHHHHHHHHHHHCCCCTTTSTTCCCC-------CCSSCCBCHHHHHHHHHCCHHHHHHHHHHSCSSTTTSCCHHHHHH
T ss_pred CCHHHHHHHHHHhcCCCChhhccccchhhhhhhhcccccccccchhhhccccCCHHHHHHHHHHCcCChhHCcCHHHHHc
Confidence 54433222222211111111000000000 0 01111 11 123456778999999999999999875
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.40 E-value=1.7e-15 Score=169.57 Aligned_cols=298 Identities=18% Similarity=0.156 Sum_probs=203.2
Q ss_pred eeEEEEEEcccCcCCC-CCcccCCCCCCCEEEccCCCCCC----CCCccccCCCCcCEEeccCCcCCCC----CCcccc-
Q 038019 65 CHITKLRVYGLNKKGV-IPEELVTLQYLTVLKIDQNFFTG----PLPSFIGNLSRLMFLSFSHNDFSGP----VPRELG- 134 (866)
Q Consensus 65 ~~v~~L~l~~~~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~----~~p~~l~~l~~L~~L~Ls~N~l~~~----~p~~l~- 134 (866)
.++++|+++++++++. +..-+..+++|++|+|++|.++. .+...+..+++|++|||++|.|+.. +...+.
T Consensus 2 ~~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~ 81 (460)
T d1z7xw1 2 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 81 (460)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred CCCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhc
Confidence 3799999999999875 24446678999999999999874 2455678999999999999998631 223333
Q ss_pred CCCCCCEeeccCCCCCCC----CchhhcCCCCccEEEeecCCCCCCCh--------------------------------
Q 038019 135 NLKELTVLAFGTNNFSGA----LPPELGNLAKLEQLYIDSCGAGGEIP-------------------------------- 178 (866)
Q Consensus 135 ~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~~p-------------------------------- 178 (866)
...+|++|+|++|++++. ++..+..+++|++|+|++|.++....
T Consensus 82 ~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (460)
T d1z7xw1 82 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL 161 (460)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred CCCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhhhcccccccccccccccccccchhhhccc
Confidence 235899999999999754 45667889999999999987642111
Q ss_pred -hhhhcCcCCCEEEecCCCCC-----------------------------CC----CcccccCCCCCCeEEccCCCCCC-
Q 038019 179 -STFAKLRNMQTLWASDNPFT-----------------------------GK----IPDFIGNWTKLKSLRFQGNSFQG- 223 (866)
Q Consensus 179 -~~~~~l~~L~~L~L~~N~l~-----------------------------~~----~p~~l~~l~~L~~L~L~~N~l~~- 223 (866)
..+.....++.++++.+.+. .. ....+...+.++.+++.+|.+..
T Consensus 162 ~~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~~~~ 241 (460)
T d1z7xw1 162 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV 241 (460)
T ss_dssp HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccchhhhcccccccccccccccchhhcccccc
Confidence 11122345556665544321 00 00122345667788888776542
Q ss_pred ----CCchhhcCCCCCCEEEccCccCCCCCc----hhhhcCCCCCceeccCcccccCCCcc-----cCCCCCcCEEeeec
Q 038019 224 ----PIPSSLSKLASLESLQMSDIYNVSSSL----DFVMSLKNLTDLSLRNALITGTIPFG-----IGELQMLQILDLSF 290 (866)
Q Consensus 224 ----~~p~~~~~l~~L~~L~l~~n~~~~~~~----~~~~~l~~L~~L~L~~n~l~~~~p~~-----~~~l~~L~~L~Ls~ 290 (866)
.....+.....|+.|++++|.+..... ..+...+.++.+++++|.+++..... ......|+.+++++
T Consensus 242 ~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~ 321 (460)
T d1z7xw1 242 GMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKS 321 (460)
T ss_dssp HHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred ccchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhccccccccccccccccc
Confidence 123344557799999999987763322 24566889999999999987532221 12346899999999
Q ss_pred CcCcccCCcc----cCCCCCCcEEECcCCCCccc----CCcc---cCCCCCEEEeeCCCCCCc----cCcccc--ccc-c
Q 038019 291 NNLTGQIPAT----LFNIDSLEYLFLGNNSLSGT----LPDQ---KSENLQKIDLSHNHLSGT----FPLWVN--SEL-Q 352 (866)
Q Consensus 291 N~l~~~~p~~----l~~l~~L~~L~L~~N~l~g~----~p~~---~~~~L~~L~Ls~N~l~g~----~p~~~~--~~~-~ 352 (866)
|.++...... +...++|++|+|++|+++.. ++.. ..+.|+.|+|++|+|+.. ++..+. ..+ .
T Consensus 322 ~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~ 401 (460)
T d1z7xw1 322 CSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRE 401 (460)
T ss_dssp SCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCE
T ss_pred cchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCE
Confidence 9998654333 34567899999999999742 2221 235799999999999864 233332 233 4
Q ss_pred cccccccccc
Q 038019 353 MNLAVNNFKF 362 (866)
Q Consensus 353 l~l~~N~~~~ 362 (866)
|++++|+++.
T Consensus 402 L~Ls~N~i~~ 411 (460)
T d1z7xw1 402 LDLSNNCLGD 411 (460)
T ss_dssp EECCSSSCCH
T ss_pred EECCCCcCCH
Confidence 9999999864
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.39 E-value=2.5e-14 Score=154.21 Aligned_cols=242 Identities=19% Similarity=0.204 Sum_probs=149.9
Q ss_pred CCccccCCCCcCEEeccCCcCCCC----CCccccCCCCCCEeeccCCCCCCCC---chhhcCCCCccEEEeecCCCCCCC
Q 038019 105 LPSFIGNLSRLMFLSFSHNDFSGP----VPRELGNLKELTVLAFGTNNFSGAL---PPELGNLAKLEQLYIDSCGAGGEI 177 (866)
Q Consensus 105 ~p~~l~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~---p~~l~~l~~L~~L~L~~n~l~~~~ 177 (866)
+...+.+...|+.|+|++|.|... +-..+..+++|+.|+++++...... +..+. .+
T Consensus 23 l~~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~-----------------~l 85 (344)
T d2ca6a1 23 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALR-----------------LL 85 (344)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHH-----------------HH
T ss_pred HHHHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHH-----------------HH
Confidence 444566677777888887776532 2234556677777777665443211 11100 01
Q ss_pred hhhhhcCcCCCEEEecCCCCCCC----CcccccCCCCCCeEEccCCCCCCC-------------CchhhcCCCCCCEEEc
Q 038019 178 PSTFAKLRNMQTLWASDNPFTGK----IPDFIGNWTKLKSLRFQGNSFQGP-------------IPSSLSKLASLESLQM 240 (866)
Q Consensus 178 p~~~~~l~~L~~L~L~~N~l~~~----~p~~l~~l~~L~~L~L~~N~l~~~-------------~p~~~~~l~~L~~L~l 240 (866)
...+..+++|+.|+|++|.++.. +...+...++|++|++++|.+... ........+.|+.|.+
T Consensus 86 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l 165 (344)
T d2ca6a1 86 LQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIIC 165 (344)
T ss_dssp HHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEC
T ss_pred HHHHhhCCCcccccccccccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeec
Confidence 12233444555555555555432 222333445566666665554311 0112245678999999
Q ss_pred cCccCCCCCch----hhhcCCCCCceeccCcccccC-----CCcccCCCCCcCEEeeecCcCccc----CCcccCCCCCC
Q 038019 241 SDIYNVSSSLD----FVMSLKNLTDLSLRNALITGT-----IPFGIGELQMLQILDLSFNNLTGQ----IPATLFNIDSL 307 (866)
Q Consensus 241 ~~n~~~~~~~~----~~~~l~~L~~L~L~~n~l~~~-----~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L 307 (866)
++|.+...... .+...+.|+.|+|++|.++.. +...+..+++|+.|+|++|.++.. +...+..+++|
T Consensus 166 ~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L 245 (344)
T d2ca6a1 166 GRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNL 245 (344)
T ss_dssp CSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTC
T ss_pred ccccccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccc
Confidence 99887654433 356688999999999998742 334567789999999999998643 44567789999
Q ss_pred cEEECcCCCCcccCCc--------ccCCCCCEEEeeCCCCCCcc----Ccccc---ccc-cccccccccccc
Q 038019 308 EYLFLGNNSLSGTLPD--------QKSENLQKIDLSHNHLSGTF----PLWVN---SEL-QMNLAVNNFKFD 363 (866)
Q Consensus 308 ~~L~L~~N~l~g~~p~--------~~~~~L~~L~Ls~N~l~g~~----p~~~~---~~~-~l~l~~N~~~~~ 363 (866)
++|+|++|.+++.-.. ...+.|+.|++++|+++..- ...+. ..+ .|++++|.+..+
T Consensus 246 ~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~~ 317 (344)
T d2ca6a1 246 RELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEE 317 (344)
T ss_dssp CEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTT
T ss_pred hhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCCc
Confidence 9999999999743111 12357999999999987642 22221 123 389999998643
|
| >d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: gamma-subunit of glycogen phosphorylase kinase (Phk) species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=99.39 E-value=7.2e-14 Score=145.07 Aligned_cols=127 Identities=18% Similarity=0.229 Sum_probs=88.5
Q ss_pred CCCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeec------CCCCchhHHHHHHHHHHHHHhcCC
Q 038019 641 SKPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMR------GHLTEKADVFSFGVVALEIISGRA 714 (866)
Q Consensus 641 ~~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~------~~~t~ksDVySfGvvLlEl~tg~~ 714 (866)
...|++.+.+...++.|||.++.++.+... +...||..|+|||++.. ..++.|+||||+||||+||+||+.
T Consensus 137 kp~Nill~~~~~~kl~DFG~a~~~~~~~~~---~~~~gt~~y~~PE~~~~~~~~~~~~~~~~~DiwslGvilyeml~g~~ 213 (277)
T d1phka_ 137 KPENILLDDDMNIKLTDFGFSCQLDPGEKL---REVCGTPSYLAPEIIECSMNDNHPGYGKEVDMWSTGVIMYTLLAGSP 213 (277)
T ss_dssp SGGGEEECTTCCEEECCCTTCEECCTTCCB---CCCCSCGGGCCHHHHHHHHCTTSCCBCTHHHHHHHHHHHHHHHHSSC
T ss_pred ccceEEEcCCCCeEEccchheeEccCCCce---eeeeccCCCCCHHHhhccccccCCCCCchheEcccchhhhhhccCCC
Confidence 334777777777889999999999876543 34579999999998863 357889999999999999999999
Q ss_pred CCCCCchhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 715 SSDKSLDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 715 p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
|+......+ . ......+.. +...+.....+ + .+.++..+|++.+|++|||+.||++
T Consensus 214 Pf~~~~~~~---~----~~~i~~~~~-~~~~~~~~~~s-~---~~~~li~~~L~~~p~~R~s~~eil~ 269 (277)
T d1phka_ 214 PFWHRKQML---M----LRMIMSGNY-QFGSPEWDDYS-D---TVKDLVSRFLVVQPQKRYTAEEALA 269 (277)
T ss_dssp SSCCSSHHH---H----HHHHHHTCC-CCCTTTGGGSC-H---HHHHHHHHHCCSSGGGSCCHHHHTT
T ss_pred CCCCCCHHH---H----HHHHHhCCC-CCCCcccccCC-H---HHHHHHHHHccCChhHCcCHHHHHc
Confidence 998654322 1 111222211 11111112222 2 3455667999999999999999854
|
| >d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Cyclin-dependent PK, CDK2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.34 E-value=1e-13 Score=145.99 Aligned_cols=137 Identities=15% Similarity=0.166 Sum_probs=86.4
Q ss_pred CCCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecC-CCCchhHHHHHHHHHHHHHhcCCCCCCC
Q 038019 641 SKPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRG-HLTEKADVFSFGVVALEIISGRASSDKS 719 (866)
Q Consensus 641 ~~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~-~~t~ksDVySfGvvLlEl~tg~~p~~~~ 719 (866)
...|++...+...++.|||.++....... ......||+.|+|||..... .++.++|||||||+++||+||+.|+...
T Consensus 129 KpeNIl~~~~~~~kl~DFG~a~~~~~~~~--~~~~~~gt~~y~apE~~~~~~~~~~~~DiwSlGvily~m~~G~~Pf~~~ 206 (298)
T d1gz8a_ 129 KPQNLLINTEGAIKLADFGLARAFGVPVR--TYTHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGD 206 (298)
T ss_dssp CGGGEEECTTSCEEECSTTHHHHHCCCSB--CTTCCBCCCTTCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSCCCS
T ss_pred CchheeecccCcceeccCCcceeccCCcc--cceeecccceeeehhhhccccCCCccccccccchhhhHHhhCCCCCCCC
Confidence 33477776666778999999988765431 22234699999999987654 4689999999999999999999999865
Q ss_pred chhhhhcHHHHHHHHhh---cCCcccc-----cCCcc---cccCH-----HHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 720 LDMEKIYLLEWAWNLHE---NNQSFGL-----VDPTL---TEFND-----KEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 720 ~~~~~~~l~~~~~~~~~---~~~~~~~-----~d~~l---~~~~~-----~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
...+... -+..... +...... ..+.. ..... .....+.++..+|++.||++|||+.|+++
T Consensus 207 ~~~~~~~---~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dll~~mL~~dP~~R~t~~ell~ 282 (298)
T d1gz8a_ 207 SEIDQLF---RIFRTLGTPDEVVWPGVTSMPDYKPSFPKWARQDFSKVVPPLDEDGRSLLSQMLHYDPNKRISAKAALA 282 (298)
T ss_dssp SHHHHHH---HHHHHHCCCCTTTSTTGGGSTTCCTTSCCCCCCCHHHHSTTCCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred CHHHHHH---HHHHhcCCCchhhccccccccccccccccccccchhhhccCCCHHHHHHHHHHccCChhHCcCHHHHhC
Confidence 4322111 1111110 0000000 00000 00000 01134556677999999999999999976
|
| >d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Cyclin-dependent PK, CDK2 species: (Plasmodium falciparum) [TaxId: 5833]
Probab=99.33 E-value=2.8e-13 Score=141.71 Aligned_cols=144 Identities=15% Similarity=0.115 Sum_probs=85.9
Q ss_pred ccCCCCCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeec-CCCCchhHHHHHHHHHHHHHhcCCC
Q 038019 637 VGIGSKPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMR-GHLTEKADVFSFGVVALEIISGRAS 715 (866)
Q Consensus 637 ~~~~~~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~-~~~t~ksDVySfGvvLlEl~tg~~p 715 (866)
|......|++...+...++.|||.+..++...... ....|++.|+|||.+.. ..++.++||||+||+++||+||+.|
T Consensus 123 HrDiKp~NIll~~~~~~kl~DfG~a~~~~~~~~~~--~~~~~~~~y~~pE~~~~~~~~~~~~DiwslGv~l~el~~G~~p 200 (286)
T d1ob3a_ 123 HRDLKPQNLLINREGELKIADFGLARAFGIPVRKY--THEIVTLWYRAPDVLMGSKKYSTTIDIWSVGCIFAEMVNGTPL 200 (286)
T ss_dssp CSCCCGGGEEECTTSCEEECCTTHHHHHCC-----------CCCTTCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCS
T ss_pred ecCCCCceeeEcCCCCEEecccccceecccCcccc--ceecccchhhhHHHHhCCCCCCcceeehhcCcHHHHHHHCCCC
Confidence 33333347777777788899999999887654322 23358899999998865 4579999999999999999999999
Q ss_pred CCCCchhhhhcHHHHHHHHhhcCCc---ccc--cCCcc--------cccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 716 SDKSLDMEKIYLLEWAWNLHENNQS---FGL--VDPTL--------TEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 716 ~~~~~~~~~~~l~~~~~~~~~~~~~---~~~--~d~~l--------~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
+......+...-+............ .+. .+... ..........+.++..+|++.||++|||++|+++
T Consensus 201 f~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dli~~~L~~dP~~R~s~~ell~ 280 (286)
T d1ob3a_ 201 FPGVSEADQLMRIFRILGTPNSKNWPNVTELPKYDPNFTVYEPLPWESFLKGLDESGIDLLSKMLKLDPNQRITAKQALE 280 (286)
T ss_dssp CCCSSHHHHHHHHHHHHCCCCTTTSTTGGGSTTCCTTCCCCCCCCGGGTCCSCCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred CCCCCHHHHHHHHHHhhCCCChhhccchhhhhhcccccccccCcchhhhcccCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence 9865433221111111000000000 000 00000 0001111124456667999999999999999863
|
| >d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: MAP kinase p38-gamma species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.31 E-value=4.4e-13 Score=144.26 Aligned_cols=142 Identities=13% Similarity=0.065 Sum_probs=89.2
Q ss_pred hccCCCCCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeec-CCCCchhHHHHHHHHHHHHHhcCC
Q 038019 636 LVGIGSKPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMR-GHLTEKADVFSFGVVALEIISGRA 714 (866)
Q Consensus 636 ~~~~~~~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~-~~~t~ksDVySfGvvLlEl~tg~~ 714 (866)
.|......|++...+...++.|||.++...... ....||..|+|||.+.+ ..++.++||||+||+++||++|+.
T Consensus 143 iHrDiKp~NIL~~~~~~~kl~Dfg~a~~~~~~~-----~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlGvil~ell~g~~ 217 (346)
T d1cm8a_ 143 IHRDLKPGNLAVNEDCELKILDFGLARQADSEM-----TGYVVTRWYRAPEVILNWMRYTQTVDIWSVGCIMAEMITGKT 217 (346)
T ss_dssp ECCCCCGGGEEECTTCCEEECCCTTCEECCSSC-----CSSCSCGGGCCTHHHHTTTCCCTTHHHHHHHHHHHHHHHSSC
T ss_pred cccccCcchhhcccccccccccccceeccCCcc-----ccccccccccCHHHHcCCCCCCccchhhcchHHHHHHHHCcC
Confidence 333334447777777778899999999886543 24569999999998875 457899999999999999999999
Q ss_pred CCCCCchhhhhcHHHHHHHH-----hhcC----------CcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHH
Q 038019 715 SSDKSLDMEKIYLLEWAWNL-----HENN----------QSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSR 779 (866)
Q Consensus 715 p~~~~~~~~~~~l~~~~~~~-----~~~~----------~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~ 779 (866)
|+.................. .... ...+.....+.......-..+.++...|++.||++|||+.|
T Consensus 218 pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dli~~mL~~dP~~R~ta~e 297 (346)
T d1cm8a_ 218 LFKGSDHLDQLKEIMKVTGTPPAEFVQRLQSDEAKNYMKGLPELEKKDFASILTNASPLAVNLLEKMLVLDAEQRVTAGE 297 (346)
T ss_dssp SSCCSSHHHHHHHHHHHHCCCCHHHHHTCSCHHHHHHHHHSCCCCCCCGGGTCTTCCHHHHHHHHHHSCSSTTTSCCHHH
T ss_pred CCCCCChHHHHHHHHhccCCCcHHHHhhhcchhhhhhhccCCcccccchHHhccCCCHHHHHHHHHHCcCChhHCcCHHH
Confidence 99765432221111111000 0000 00000001111111111123445667999999999999999
Q ss_pred HHH
Q 038019 780 VVA 782 (866)
Q Consensus 780 V~~ 782 (866)
+++
T Consensus 298 iL~ 300 (346)
T d1cm8a_ 298 ALA 300 (346)
T ss_dssp HHH
T ss_pred Hhc
Confidence 986
|
| >d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Sky1p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.28 E-value=1.8e-12 Score=140.44 Aligned_cols=125 Identities=17% Similarity=0.141 Sum_probs=76.7
Q ss_pred HHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCCchhhhh----cHH
Q 038019 653 SATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSLDMEKI----YLL 728 (866)
Q Consensus 653 ~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~~~~~----~l~ 728 (866)
.+..|||.+.....-. ...+||..|+|||....+.++.|+||||+||+++||++|+.||......... .+.
T Consensus 171 ~kl~dfg~s~~~~~~~-----~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pF~~~~~~~~~~~~~~~~ 245 (362)
T d1q8ya_ 171 IKIADLGNACWYDEHY-----TNSIQTREYRSPEVLLGAPWGCGADIWSTACLIFELITGDFLFEPDEGHSYTKDDDHIA 245 (362)
T ss_dssp EEECCCTTCEETTBCC-----CSCCSCGGGCCHHHHHTCCCCTHHHHHHHHHHHHHHHHSSCCC---------CHHHHHH
T ss_pred eeEeeccccccccccc-----ccccccccccChhhccccCCCccccccchHHHHHHHHHCCCCCCCCccccccchhHHHH
Confidence 3566777766554322 2346999999999999999999999999999999999999998754321111 111
Q ss_pred HHHHHH-------hhcC----------CcccccCC----cc-------cccCHHHHHHHHHHHHHccCCCCCCCCCHHHH
Q 038019 729 EWAWNL-------HENN----------QSFGLVDP----TL-------TEFNDKEALRVIGVALLCTQTSPMMRPPMSRV 780 (866)
Q Consensus 729 ~~~~~~-------~~~~----------~~~~~~d~----~l-------~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V 780 (866)
..+... ...+ .....+.. .. ..........+.++..+|++.||.+|||++|+
T Consensus 246 ~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~mL~~dP~~Rpta~e~ 325 (362)
T d1q8ya_ 246 QIIELLGELPSYLLRNGKYTRTFFNSRGLLRNISKLKFWPLEDVLTEKYKFSKDEAKEISDFLSPMLQLDPRKRADAGGL 325 (362)
T ss_dssp HHHHHHCSCCHHHHHHCTTHHHHBCC--CBSSCCCCCBCCHHHHHHHTTCCCHHHHHHHHHHHGGGGCSSTTTCBCHHHH
T ss_pred HHHHHhCCCCHHHhhcccccccccccchhhhccccccCCchhhhcccccccCcccCHHHHHHHHHHCCCChhHCcCHHHH
Confidence 111100 0000 00000000 00 01234455677788889999999999999999
Q ss_pred HH
Q 038019 781 VA 782 (866)
Q Consensus 781 ~~ 782 (866)
++
T Consensus 326 L~ 327 (362)
T d1q8ya_ 326 VN 327 (362)
T ss_dssp HT
T ss_pred hc
Confidence 75
|
| >d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Titin, kinase domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.27 E-value=7.6e-13 Score=140.39 Aligned_cols=115 Identities=15% Similarity=0.228 Sum_probs=81.3
Q ss_pred HHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCCchhhhhcHHHHH
Q 038019 652 RSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSLDMEKIYLLEWA 731 (866)
Q Consensus 652 ~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~~~~~~l~~~~ 731 (866)
..++.|||.++.+..+.. .....||+.|+|||...+..++.++||||+||+++||+||+.||......+ +..-+
T Consensus 142 ~ikl~DFG~~~~~~~~~~---~~~~~~t~~y~ape~~~~~~~~~~~DiWSlGvily~ll~G~~Pf~~~~~~~---~~~~i 215 (321)
T d1tkia_ 142 TIKIIEFGQARQLKPGDN---FRLLFTAPEYYAPEVHQHDVVSTATDMWSLGTLVYVLLSGINPFLAETNQQ---IIENI 215 (321)
T ss_dssp CEEECCCTTCEECCTTCE---EEEEESCGGGSCHHHHTTCEECHHHHHHHHHHHHHHHHHSSCTTCCSSHHH---HHHHH
T ss_pred EEEEcccchhhccccCCc---ccccccccccccchhccCCCCCchhhcccHHHHHHHHHhCCCCCCCCCHHH---HHHHH
Confidence 456889999998866543 344568999999999999999999999999999999999999997644322 21111
Q ss_pred HHHhhcCCcccccCCcc-cccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 732 WNLHENNQSFGLVDPTL-TEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 732 ~~~~~~~~~~~~~d~~l-~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
.. +.. .++... .... ..+.++...|++.||++|||+.|+++
T Consensus 216 ---~~-~~~--~~~~~~~~~~s----~~~~~li~~~L~~dp~~R~s~~eil~ 257 (321)
T d1tkia_ 216 ---MN-AEY--TFDEEAFKEIS----IEAMDFVDRLLVKERKSRMTASEALQ 257 (321)
T ss_dssp ---HH-TCC--CCCHHHHTTSC----HHHHHHHHTTSCSSGGGSCCHHHHHH
T ss_pred ---Hh-CCC--CCChhhccCCC----HHHHHHHHHHccCChhHCcCHHHHhc
Confidence 11 110 011100 1111 23455666999999999999999986
|
| >d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Glycogen synthase kinase-3 beta (Gsk3b) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.26 E-value=9.8e-13 Score=141.62 Aligned_cols=144 Identities=17% Similarity=0.109 Sum_probs=88.6
Q ss_pred hccCCCCCcccCHHHH-HHHhcCCccccccCCCCceeEEEeecCCCCccCceeeec-CCCCchhHHHHHHHHHHHHHhcC
Q 038019 636 LVGIGSKPNIFGYAEL-RSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMR-GHLTEKADVFSFGVVALEIISGR 713 (866)
Q Consensus 636 ~~~~~~~~~~~~~~~~-~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~-~~~t~ksDVySfGvvLlEl~tg~ 713 (866)
.|+.....|++...+. ..++.|||.++.+..+.. +....||..|+|||.+.. ..++.++||||+||+++||+||+
T Consensus 144 iHrDiKp~NILl~~~~~~~kl~DFG~a~~~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~~~~DIwSlG~il~el~~g~ 220 (350)
T d1q5ka_ 144 CHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRGEP---NVSYICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQ 220 (350)
T ss_dssp ECCCCCGGGEEECTTTCCEEECCCTTCEECCTTSC---CCSCCSCTTSCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHTS
T ss_pred cccCCCcceEEEecCCCceeEecccchhhccCCcc---cccccccccccChHHhhcccCCCcceeecccceEEEehhhCC
Confidence 3333333477766553 567999999988866543 233578999999998764 57899999999999999999999
Q ss_pred CCCCCCchhhhhcHHHH---------HHHHhhc---CCcccccCCcc-cccCHHHHHHHHHHHHHccCCCCCCCCCHHHH
Q 038019 714 ASSDKSLDMEKIYLLEW---------AWNLHEN---NQSFGLVDPTL-TEFNDKEALRVIGVALLCTQTSPMMRPPMSRV 780 (866)
Q Consensus 714 ~p~~~~~~~~~~~l~~~---------~~~~~~~---~~~~~~~d~~l-~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V 780 (866)
.||......+....+.+ ....... ....+...... ..........+.++..+|++.||++|||+.|+
T Consensus 221 ~pf~~~~~~~~l~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dLl~~mL~~dP~~R~ta~e~ 300 (350)
T d1q5ka_ 221 PIFPGDSGVDQLVEIIKVLGTPTREQIREMNPNYTEFKFPQIKAHPWTKVFRPRTPPEAIALCSRLLEYTPTARLTPLEA 300 (350)
T ss_dssp CSSCCSSHHHHHHHHHHHHCCCCHHHHHHHCC---CCCCCCCCCCCGGGTSCTTSCHHHHHHHHHHSCSSGGGSCCHHHH
T ss_pred CCCCCCCHHHHHHHHHHHhCCChHHhhhhhccchhhccccccccCchhhhcccCCCHHHHHHHHHHccCChhHCcCHHHH
Confidence 99976543322111111 1110000 00000000000 00011112234556669999999999999998
Q ss_pred HH
Q 038019 781 VA 782 (866)
Q Consensus 781 ~~ 782 (866)
++
T Consensus 301 L~ 302 (350)
T d1q5ka_ 301 CA 302 (350)
T ss_dssp HT
T ss_pred hc
Confidence 75
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Probab=99.25 E-value=7.2e-14 Score=137.39 Aligned_cols=113 Identities=24% Similarity=0.340 Sum_probs=70.7
Q ss_pred CCccccCCCCcCEEeccCCcCCCCCCccccCCCCCCEeeccCCCCCCCCchhhcCCCCccEEEeecCCCCCCChhhhhcC
Q 038019 105 LPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKELTVLAFGTNNFSGALPPELGNLAKLEQLYIDSCGAGGEIPSTFAKL 184 (866)
Q Consensus 105 ~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l 184 (866)
++.++..+++|++|+|++|+|+. ++ .|.++++|++|+|++|.++ .+|.....+++|++|++++|+++.. ..+..+
T Consensus 40 l~~sl~~L~~L~~L~Ls~n~I~~-i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~~l--~~~~~l 114 (198)
T d1m9la_ 40 MDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASL--SGIEKL 114 (198)
T ss_dssp CHHHHHHTTTCCEEECSEEEESC-CC-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECCCH--HHHHHH
T ss_pred hhhHHhcccccceeECcccCCCC-cc-cccCCccccChhhcccccc-ccccccccccccccccccccccccc--cccccc
Confidence 44556666666666666666663 33 3666666777777666665 3344444455677777777766642 346667
Q ss_pred cCCCEEEecCCCCCCCCc-ccccCCCCCCeEEccCCCCC
Q 038019 185 RNMQTLWASDNPFTGKIP-DFIGNWTKLKSLRFQGNSFQ 222 (866)
Q Consensus 185 ~~L~~L~L~~N~l~~~~p-~~l~~l~~L~~L~L~~N~l~ 222 (866)
++|++|++++|+++.... ..+..+++|+.|+|++|++.
T Consensus 115 ~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~ 153 (198)
T d1m9la_ 115 VNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLY 153 (198)
T ss_dssp HHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHH
T ss_pred ccccccccccchhccccccccccCCCccceeecCCCccc
Confidence 777777777777764321 35667777777777777654
|
| >d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: MAP kinase Erk2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.25 E-value=5.5e-13 Score=143.33 Aligned_cols=147 Identities=14% Similarity=0.075 Sum_probs=89.5
Q ss_pred hccCCCCCcccCHHHHHHHhcCCccccccCCCCce-eEEEeecCCCCccCceeeec-CCCCchhHHHHHHHHHHHHHhcC
Q 038019 636 LVGIGSKPNIFGYAELRSATKDFNRSNKLGEGGYG-PVYKVTANSYGYLAPEYAMR-GHLTEKADVFSFGVVALEIISGR 713 (866)
Q Consensus 636 ~~~~~~~~~~~~~~~~~~~~~dF~~~~~lg~g~~g-~vy~~~~gt~gY~aPE~~~~-~~~t~ksDVySfGvvLlEl~tg~ 713 (866)
+|+.....|++...+...++.|||.++.+...... ......+||+.|+|||.+.. ..++.++||||+||+++||+||+
T Consensus 131 iHRDIKp~NILl~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~~~DiwSlG~il~eml~g~ 210 (345)
T d1pmea_ 131 LHRDLKPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNR 210 (345)
T ss_dssp ECCCCCGGGEEECTTCCEEECCCTTCEECCGGGCBCCTTCCCCSCGGGCCGGGTTTBCSCSTHHHHHHHHHHHHHHHHSS
T ss_pred cCCCCCcceEEECCCCCEEEcccCceeeccCCCccceeeccccccceechHHHhhcCCCCCchhhhhccCceehHHhhCC
Confidence 33333334777777777889999999877543221 11234579999999998854 56789999999999999999999
Q ss_pred CCCCCCchhhhhcHHHHHHHHhhcCCccc----------ccCCcccccCHHH-----HHHHHHHHHHccCCCCCCCCCHH
Q 038019 714 ASSDKSLDMEKIYLLEWAWNLHENNQSFG----------LVDPTLTEFNDKE-----ALRVIGVALLCTQTSPMMRPPMS 778 (866)
Q Consensus 714 ~p~~~~~~~~~~~l~~~~~~~~~~~~~~~----------~~d~~l~~~~~~~-----~~~~~~la~~C~~~~p~~RPsm~ 778 (866)
.||......+.......+........... ...+.....+... -.++.++...|++.||++|||+.
T Consensus 211 ~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~ta~ 290 (345)
T d1pmea_ 211 PIFPGKHYLDQLNHILGILGSPSQEDLNCIINLKARNYLLSLPHKNKVPWNRLFPNADSKALDLLDKMLTFNPHKRIEVE 290 (345)
T ss_dssp CSCCCSSHHHHHHHHHHHHCSCCHHHHHTCCCHHHHHHHHTSCCCCCCCHHHHCTTSCHHHHHHHHHHSCSSTTTSCCHH
T ss_pred CCCCCCCHHHHHHHHhhhccCCChhhhhhhhhhhhhcccccCCccCCCCHHHhCCCCCHHHHHHHHHHccCChhHCcCHH
Confidence 99976543322211111110000000000 0000000011100 12456677799999999999999
Q ss_pred HHHH
Q 038019 779 RVVA 782 (866)
Q Consensus 779 ~V~~ 782 (866)
|+++
T Consensus 291 e~L~ 294 (345)
T d1pmea_ 291 QALA 294 (345)
T ss_dssp HHHT
T ss_pred HHhc
Confidence 9975
|
| >d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: c-jun N-terminal kinase (jnk3s) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.21 E-value=2.8e-12 Score=138.22 Aligned_cols=136 Identities=18% Similarity=0.137 Sum_probs=79.2
Q ss_pred cccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCCCCchhHHHHHHHHHHHHHhcCCCCCCCchhh
Q 038019 644 NIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSLDME 723 (866)
Q Consensus 644 ~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~~t~ksDVySfGvvLlEl~tg~~p~~~~~~~~ 723 (866)
|++...+...++.||+.++..+.+.... ...||..|+|||++.+..++.++||||+||+++||++|+.||.......
T Consensus 149 Nil~~~~~~~kl~df~~~~~~~~~~~~~---~~~~t~~y~aPE~l~~~~~~~~~DiwSlG~~l~ell~g~~pF~~~~~~~ 225 (355)
T d2b1pa1 149 NIVVKSDCTLKILDFGLARTAGTSFMMT---PYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKILFPGRDYID 225 (355)
T ss_dssp GEEECTTCCEEECCCCC------------------CCTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSSCCSSHHH
T ss_pred ccccccccceeeechhhhhccccccccc---cccccccccChhhhcCCCCCCCcccccccchHHHHhhCCCCCCCCCHHH
Confidence 6666666667788999888877655433 3468999999999999999999999999999999999999986543211
Q ss_pred hhcHH---------H-------HHHHHhhcCC-c-----ccccCCcc----cccCHHHHHHHHHHHHHccCCCCCCCCCH
Q 038019 724 KIYLL---------E-------WAWNLHENNQ-S-----FGLVDPTL----TEFNDKEALRVIGVALLCTQTSPMMRPPM 777 (866)
Q Consensus 724 ~~~l~---------~-------~~~~~~~~~~-~-----~~~~d~~l----~~~~~~~~~~~~~la~~C~~~~p~~RPsm 777 (866)
....+ + .......... . ........ ..........+.++..+|++.||++|||+
T Consensus 226 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dll~~mL~~dP~~R~ta 305 (355)
T d2b1pa1 226 QWNKVIEQLGTPCPEFMKKLQPTVRNYVENRPKYAGLTFPKLFPDSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISV 305 (355)
T ss_dssp HHHHHHHHHCCCCHHHHTTSCHHHHHHHHTSCCCCCCCHHHHSCGGGSCCSSHHHHHHHHHHHHHHHHHSCSSTTTSCCH
T ss_pred HHHHHHHhccCCCHHHHHHhhhhHHHHhhcCccccccccccccccccccccccccccCCHHHHHHHHHHCcCChhHCcCH
Confidence 11000 0 0011111100 0 00010011 11112233456678889999999999999
Q ss_pred HHHHH
Q 038019 778 SRVVA 782 (866)
Q Consensus 778 ~~V~~ 782 (866)
+||++
T Consensus 306 ~elL~ 310 (355)
T d2b1pa1 306 DDALQ 310 (355)
T ss_dssp HHHHT
T ss_pred HHHhc
Confidence 99964
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Probab=99.20 E-value=7.3e-14 Score=137.34 Aligned_cols=115 Identities=18% Similarity=0.220 Sum_probs=97.7
Q ss_pred CCCcccCCCCCCCEEEccCCCCCCCCCccccCCCCcCEEeccCCcCCCCCCccccCCCCCCEeeccCCCCCCCCchhhcC
Q 038019 80 VIPEELVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKELTVLAFGTNNFSGALPPELGN 159 (866)
Q Consensus 80 ~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~ 159 (866)
.++.+|..|++|++|+|++|+|+. ++ .|.++++|++|+|++|.|+ .+|..+..+++|++|++++|+++.. +.+..
T Consensus 39 ~l~~sl~~L~~L~~L~Ls~n~I~~-i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~~l--~~~~~ 113 (198)
T d1m9la_ 39 KMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASL--SGIEK 113 (198)
T ss_dssp CCHHHHHHTTTCCEEECSEEEESC-CC-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECCCH--HHHHH
T ss_pred hhhhHHhcccccceeECcccCCCC-cc-cccCCccccChhhcccccc-ccccccccccccccccccccccccc--ccccc
Confidence 356778999999999999999984 44 5899999999999999998 5666666677899999999999853 46888
Q ss_pred CCCccEEEeecCCCCCCCh-hhhhcCcCCCEEEecCCCCCC
Q 038019 160 LAKLEQLYIDSCGAGGEIP-STFAKLRNMQTLWASDNPFTG 199 (866)
Q Consensus 160 l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~L~~N~l~~ 199 (866)
+++|+.|+|++|+++.... ..|..+++|+.|+|++|.+..
T Consensus 114 l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ 154 (198)
T d1m9la_ 114 LVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYN 154 (198)
T ss_dssp HHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHH
T ss_pred cccccccccccchhccccccccccCCCccceeecCCCcccc
Confidence 9999999999999986432 568999999999999998764
|
| >d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Ribosomal protein S6 kinase alpha 5, Msk1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.20 E-value=2e-12 Score=137.20 Aligned_cols=127 Identities=14% Similarity=0.123 Sum_probs=82.7
Q ss_pred CcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecC--CCCchhHHHHHHHHHHHHHhcCCCCCCCc
Q 038019 643 PNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRG--HLTEKADVFSFGVVALEIISGRASSDKSL 720 (866)
Q Consensus 643 ~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~--~~t~ksDVySfGvvLlEl~tg~~p~~~~~ 720 (866)
.|++.+.+...++.|||.++.+.....+.. ....||+.|+|||.+... .++.|+||||+||+|+||+||+.||....
T Consensus 158 ~Nill~~~~~vkL~DFG~a~~~~~~~~~~~-~~~~g~~~~~~pe~~~~~~~~~~~ksDIWSlG~iLyelltG~~PF~~~~ 236 (322)
T d1vzoa_ 158 ENILLDSNGHVVLTDFGLSKEFVADETERA-YDFCGTIEYMAPDIVRGGDSGHDKAVDWWSLGVLMYELLTGASPFTVDG 236 (322)
T ss_dssp GGEEECTTSCEEESCSSEEEECCGGGGGGG-CGGGSCCTTCCHHHHTTCC---CTHHHHHHHHHHHHHHHHSSCTTSCTT
T ss_pred cceeecCCCCEEEeeccchhhhcccccccc-cccccccccchhHHhhcCCcCCCchhhhHHHHHHHHHHHhCCCCCCCCC
Confidence 477777777788999999987765433321 234689999999988654 57889999999999999999999997654
Q ss_pred hhhhhcHHHHHHHHhhcCCcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCC-----HHHHHH
Q 038019 721 DMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPP-----MSRVVA 782 (866)
Q Consensus 721 ~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPs-----m~~V~~ 782 (866)
..+. ...+....... .+.+.....+ ++.++..+|++.||++||+ ++|+.+
T Consensus 237 ~~~~---~~~i~~~~~~~------~~~~~~~~s~---~~~~li~~~l~~dP~~R~s~~~~t~~eil~ 291 (322)
T d1vzoa_ 237 EKNS---QAEISRRILKS------EPPYPQEMSA---LAKDLIQRLLMKDPKKRLGCGPRDADEIKE 291 (322)
T ss_dssp SCCC---HHHHHHHHHHC------CCCCCTTSCH---HHHHHHHHHTCSSGGGSTTSSTTTHHHHHT
T ss_pred HHHH---HHHHHHhcccC------CCCCcccCCH---HHHHHHHHHcccCHHHcCCCCcccHHHHHc
Confidence 3221 11111111111 1112111223 3444556999999999995 677753
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.17 E-value=2.6e-11 Score=113.78 Aligned_cols=104 Identities=15% Similarity=0.065 Sum_probs=74.3
Q ss_pred EEEEcccCcCCCCCcccCCCCCCCEEEccCC-CCCCCCCccccCCCCcCEEeccCCcCCCCCCccccCCCCCCEeeccCC
Q 038019 69 KLRVYGLNKKGVIPEELVTLQYLTVLKIDQN-FFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKELTVLAFGTN 147 (866)
Q Consensus 69 ~L~l~~~~l~~~~p~~l~~l~~L~~L~Ls~n-~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N 147 (866)
.++..++++.. +|..+..+++|++|+|++| .++...+..|.++++|+.|+|++|+|+.+.|.+|..+++|++|+|++|
T Consensus 12 ~l~c~~~~~~~-~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N 90 (156)
T d2ifga3 12 GLRCTRDGALD-SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (156)
T ss_dssp CEECCSSCCCT-TTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred eEEecCCCCcc-CcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCC
Confidence 36666666653 4666777888888888765 477666677888888888888888888777777888888888888888
Q ss_pred CCCCCCchhhcCCCCccEEEeecCCCC
Q 038019 148 NFSGALPPELGNLAKLEQLYIDSCGAG 174 (866)
Q Consensus 148 ~l~~~~p~~l~~l~~L~~L~L~~n~l~ 174 (866)
+++...+..+ ...+|+.|+|++|.+.
T Consensus 91 ~l~~l~~~~~-~~~~l~~L~L~~Np~~ 116 (156)
T d2ifga3 91 ALESLSWKTV-QGLSLQELVLSGNPLH 116 (156)
T ss_dssp CCSCCCSTTT-CSCCCCEEECCSSCCC
T ss_pred CCcccChhhh-ccccccccccCCCccc
Confidence 8874433334 3346777777777664
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.16 E-value=7.7e-11 Score=110.49 Aligned_cols=109 Identities=18% Similarity=0.128 Sum_probs=68.5
Q ss_pred CCCcCEEeccCCcCCCCCCccccCCCCCCEeeccCC-CCCCCCchhhcCCCCccEEEeecCCCCCCChhhhhcCcCCCEE
Q 038019 112 LSRLMFLSFSHNDFSGPVPRELGNLKELTVLAFGTN-NFSGALPPELGNLAKLEQLYIDSCGAGGEIPSTFAKLRNMQTL 190 (866)
Q Consensus 112 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N-~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 190 (866)
+...+.++++++.+. ..|..+..+++|++|++++| .++...+..|.++++|+.|+|++|+++...+.+|..+++|++|
T Consensus 7 c~~~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L 85 (156)
T d2ifga3 7 PHGSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRL 85 (156)
T ss_dssp CSSSSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEE
T ss_pred cCCCCeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccce
Confidence 344556777777665 45666667777777777554 3665555566777777777777777766666666667777777
Q ss_pred EecCCCCCCCCcccccCCCCCCeEEccCCCCC
Q 038019 191 WASDNPFTGKIPDFIGNWTKLKSLRFQGNSFQ 222 (866)
Q Consensus 191 ~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~ 222 (866)
+|++|+|+...+..|.. .+|+.|+|++|.+.
T Consensus 86 ~Ls~N~l~~l~~~~~~~-~~l~~L~L~~Np~~ 116 (156)
T d2ifga3 86 NLSFNALESLSWKTVQG-LSLQELVLSGNPLH 116 (156)
T ss_dssp ECCSSCCSCCCSTTTCS-CCCCEEECCSSCCC
T ss_pred eccCCCCcccChhhhcc-ccccccccCCCccc
Confidence 77777666433333333 35666666666553
|
| >d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Cyclin-dependent PK, CDK5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.12 E-value=5.5e-12 Score=132.07 Aligned_cols=136 Identities=15% Similarity=0.150 Sum_probs=84.0
Q ss_pred CcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecCC-CCchhHHHHHHHHHHHHHhcCCCCCCCch
Q 038019 643 PNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGH-LTEKADVFSFGVVALEIISGRASSDKSLD 721 (866)
Q Consensus 643 ~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~~-~t~ksDVySfGvvLlEl~tg~~p~~~~~~ 721 (866)
.|++...+...++.|||.++.++..... .....++..|+|||.+.... ++.|+|||||||+++||+||+.|+.....
T Consensus 130 ~NIli~~~~~~kl~DFG~a~~~~~~~~~--~~~~~~~~~~~~pe~~~~~~~~~~~~DiwSlG~il~ell~g~~p~~~~~~ 207 (292)
T d1unla_ 130 QNLLINRNGELKLANFGLARAFGIPVRC--YSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGND 207 (292)
T ss_dssp GGEEECTTCCEEECCCTTCEECCSCCSC--CCSCCSCGGGCCHHHHTTCSCCCTHHHHHHHHHHHHHHTTTSCCSCCCSS
T ss_pred cccccccCCceeeeecchhhcccCCCcc--ceeeccccchhhhhHhccCCCCCchhhccccchHHHHHhhCCCCCCCCCC
Confidence 3666666667789999999988765421 22335778899999887654 69999999999999999999999754332
Q ss_pred hhhhcHHHHHHHHhhc---CCc---ccccC----C------cccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 038019 722 MEKIYLLEWAWNLHEN---NQS---FGLVD----P------TLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVA 782 (866)
Q Consensus 722 ~~~~~l~~~~~~~~~~---~~~---~~~~d----~------~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~~ 782 (866)
.. ....-+...... ... .+..+ + .........-..+.++..+|++.||.+|||++||++
T Consensus 208 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dll~~mL~~dP~~R~sa~e~L~ 282 (292)
T d1unla_ 208 VD--DQLKRIFRLLGTPTEEQWPSMTKLPDYKPYPMYPATTSLVNVVPKLNATGRDLLQNLLKCNPVQRISAEEALQ 282 (292)
T ss_dssp HH--HHHHHHHHHHCCCCTTTCTTGGGSTTCCCCCCCCTTCCCTTTSTTCCHHHHHHHHHHSCSSGGGSCCHHHHTT
T ss_pred HH--HHHHHHHhhcCCCChhhhhhhhhcccccccccccccchhhhccccCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence 22 111112111110 000 00000 0 000111111123445666999999999999999864
|
| >d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: MAP kinase p38 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.11 E-value=7e-12 Score=134.82 Aligned_cols=134 Identities=13% Similarity=0.118 Sum_probs=80.1
Q ss_pred CCCcccCHHHHHHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecC-CCCchhHHHHHHHHHHHHHhcCCCCCCC
Q 038019 641 SKPNIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRG-HLTEKADVFSFGVVALEIISGRASSDKS 719 (866)
Q Consensus 641 ~~~~~~~~~~~~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~-~~t~ksDVySfGvvLlEl~tg~~p~~~~ 719 (866)
...|++...+...++.|||.+....... .+..||..|+|||..... .++.++||||+||+++||+||+.||...
T Consensus 148 Kp~NILi~~~~~~kl~dfg~a~~~~~~~-----~~~~g~~~y~apE~~~~~~~~~~~~DiwSlGv~l~~ll~g~~pF~~~ 222 (348)
T d2gfsa1 148 KPSNLAVNEDCELKILDFGLARHTDDEM-----TGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGT 222 (348)
T ss_dssp CGGGEEECTTCCEEECCC----CCTGGG-----SSSCHHHHTSCHHHHTTCSCCCTTHHHHHHHHHHHHHHHSSCSCCCS
T ss_pred CCccccccccccccccccchhcccCccc-----ccccccccccCchhhcCCccCCcccchhhhhHHHHHHHhCCCCCCCC
Confidence 3346776666677889999887765432 234688999999986654 5689999999999999999999999754
Q ss_pred chhhhhcHHHHHHHHhhcC------------------CcccccCCcccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHH
Q 038019 720 LDMEKIYLLEWAWNLHENN------------------QSFGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVV 781 (866)
Q Consensus 720 ~~~~~~~l~~~~~~~~~~~------------------~~~~~~d~~l~~~~~~~~~~~~~la~~C~~~~p~~RPsm~~V~ 781 (866)
....... .+....... ...+.-...+..........+.++..+|++.||++|||+.|++
T Consensus 223 ~~~~~~~---~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dli~~mL~~dP~~R~ta~elL 299 (348)
T d2gfsa1 223 DHIDQLK---LILRLVGTPGAELLKKISSESARNYIQSLTQMPKMNFANVFIGANPLAVDLLEKMLVLDSDKRITAAQAL 299 (348)
T ss_dssp SHHHHHH---HHHHHHCCCCHHHHTTCCCHHHHHHHTTSCCCCCCCHHHHSTTCCHHHHHHHHHHSCSSGGGSCCHHHHH
T ss_pred CHHHHHH---HHHHhcCCCChHHhhhccchhhhhhhhhcccCCCcchhhhcCCCCHHHHHHHHHHCcCChhhCcCHHHHh
Confidence 3322111 111110000 0000000000000000112345667799999999999999997
Q ss_pred H
Q 038019 782 A 782 (866)
Q Consensus 782 ~ 782 (866)
+
T Consensus 300 ~ 300 (348)
T d2gfsa1 300 A 300 (348)
T ss_dssp T
T ss_pred c
Confidence 6
|
| >d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Protein kinase CK2, alpha subunit species: Rattus norvegicus [TaxId: 10116]
Probab=99.07 E-value=1.6e-11 Score=130.80 Aligned_cols=75 Identities=17% Similarity=0.158 Sum_probs=58.7
Q ss_pred CcccCHHHH-HHHhcCCccccccCCCCceeEEEeecCCCCccCceeeecC-CCCchhHHHHHHHHHHHHHhcCCCCCCCc
Q 038019 643 PNIFGYAEL-RSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRG-HLTEKADVFSFGVVALEIISGRASSDKSL 720 (866)
Q Consensus 643 ~~~~~~~~~-~~~~~dF~~~~~lg~g~~g~vy~~~~gt~gY~aPE~~~~~-~~t~ksDVySfGvvLlEl~tg~~p~~~~~ 720 (866)
.|++...+- ..++.|||.++.+..+.. +....||..|+|||.+... .++.++||||+||+++|+++|+.|+....
T Consensus 158 ~NILi~~~~~~vkl~DFG~a~~~~~~~~---~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~~l~e~~~g~~pf~~~~ 234 (328)
T d3bqca1 158 HNVMIDHEHRKLRLIDWGLAEFYHPGQE---YNVRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGH 234 (328)
T ss_dssp GGEEEETTTTEEEECCGGGCEECCTTCC---CCSCCSCGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHTCSSSSCCS
T ss_pred cceEEcCCCCeeeecccccceeccCCCc---ccccccCccccCcccccCCCCCCcccchhhhhhhhHHhccCCCCCCCCc
Confidence 366654333 457899999998876543 2345689999999987765 47999999999999999999999987543
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.23 E-value=2.8e-08 Score=93.24 Aligned_cols=59 Identities=22% Similarity=0.182 Sum_probs=27.1
Q ss_pred hhcCcCCCEEEecCCCCCCCCcccccCCCCCCeEEccCCCCCCCCc-------hhhcCCCCCCEEE
Q 038019 181 FAKLRNMQTLWASDNPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIP-------SSLSKLASLESLQ 239 (866)
Q Consensus 181 ~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p-------~~~~~l~~L~~L~ 239 (866)
+..+++|+.|+|++|.++...+-.+....+|+.|++++|.+..... ..+..+++|+.||
T Consensus 87 ~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i~~~~P~L~~LD 152 (162)
T d1koha1 87 VQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIRERFPKLLRLD 152 (162)
T ss_dssp HHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHHHTTSTTCCEET
T ss_pred HhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHHHHHCCCCCEEC
Confidence 4445555555555555543222122223345555555555543322 1244556666554
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.20 E-value=6.7e-08 Score=90.57 Aligned_cols=66 Identities=18% Similarity=0.211 Sum_probs=32.6
Q ss_pred cCCCCCCEeeccCCCCCCCC--chhhcCCCCccEEEeecCCCCCCChhhhhcCcCCCEEEecCCCCCC
Q 038019 134 GNLKELTVLAFGTNNFSGAL--PPELGNLAKLEQLYIDSCGAGGEIPSTFAKLRNMQTLWASDNPFTG 199 (866)
Q Consensus 134 ~~l~~L~~L~Ls~N~l~~~~--p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 199 (866)
..+++|++|+|++|+++..- +..+..+++|+.|+|++|.++...+-.+....+|+.|++++|.+..
T Consensus 62 ~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~ 129 (162)
T d1koha1 62 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSD 129 (162)
T ss_dssp HHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSS
T ss_pred HhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCc
Confidence 34555555555555555331 2334445555555555555554333333333445555555555543
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=97.63 E-value=1.2e-05 Score=75.21 Aligned_cols=86 Identities=14% Similarity=0.053 Sum_probs=44.8
Q ss_pred CCCCCCEEEccCC-CCCCC----CCccccCCCCcCEEeccCCcCCC----CCCccccCCCCCCEeeccCCCCCCC----C
Q 038019 87 TLQYLTVLKIDQN-FFTGP----LPSFIGNLSRLMFLSFSHNDFSG----PVPRELGNLKELTVLAFGTNNFSGA----L 153 (866)
Q Consensus 87 ~l~~L~~L~Ls~n-~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~----~~p~~l~~l~~L~~L~Ls~N~l~~~----~ 153 (866)
+.+.|++|+|+++ .++.. +-..+...++|++|+|++|.+.. .+...+...+.|++|+|++|.++.. +
T Consensus 13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l 92 (167)
T d1pgva_ 13 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL 92 (167)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHH
Confidence 3456777777653 34321 22235556667777777666652 1223344455666666666665532 1
Q ss_pred chhhcCCCCccEEEeecCC
Q 038019 154 PPELGNLAKLEQLYIDSCG 172 (866)
Q Consensus 154 p~~l~~l~~L~~L~L~~n~ 172 (866)
...+...++|++|+|++|.
T Consensus 93 ~~aL~~n~sL~~L~l~~n~ 111 (167)
T d1pgva_ 93 LRSTLVTQSIVEFKADNQR 111 (167)
T ss_dssp HHHTTTTCCCSEEECCCCS
T ss_pred HHHHHhCCcCCEEECCCCc
Confidence 2234444555555555554
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=97.47 E-value=3.4e-05 Score=71.85 Aligned_cols=42 Identities=7% Similarity=-0.009 Sum_probs=19.5
Q ss_pred hhcCcCCCEEEecCCCCCCC----CcccccCCCCCCeEEccCCCCC
Q 038019 181 FAKLRNMQTLWASDNPFTGK----IPDFIGNWTKLKSLRFQGNSFQ 222 (866)
Q Consensus 181 ~~~l~~L~~L~L~~N~l~~~----~p~~l~~l~~L~~L~L~~N~l~ 222 (866)
+...+.|++|+|++|.++.. +-..+...++|++|+|++|.+.
T Consensus 68 L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~ 113 (167)
T d1pgva_ 68 IETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQS 113 (167)
T ss_dssp HHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSC
T ss_pred hhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCC
Confidence 33444555555555554421 1223334455555555555433
|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=96.83 E-value=0.00013 Score=67.67 Aligned_cols=65 Identities=15% Similarity=0.080 Sum_probs=32.4
Q ss_pred CCCCCCCEEEccC-CCCCCC----CCccccCCCCcCEEeccCCcCCCCC----CccccCCCCCCEeeccCCCCC
Q 038019 86 VTLQYLTVLKIDQ-NFFTGP----LPSFIGNLSRLMFLSFSHNDFSGPV----PRELGNLKELTVLAFGTNNFS 150 (866)
Q Consensus 86 ~~l~~L~~L~Ls~-n~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~----p~~l~~l~~L~~L~Ls~N~l~ 150 (866)
.+.+.|++|+|++ +.++.. +-..+...++|++|+|++|.++... -..+...+.|+.|++++|.++
T Consensus 14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~ 87 (166)
T d1io0a_ 14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS 87 (166)
T ss_dssp TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhcccccc
Confidence 3456666666665 344321 2223445566666666666554221 122334455555555555554
|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=96.72 E-value=0.00017 Score=66.86 Aligned_cols=62 Identities=19% Similarity=0.212 Sum_probs=29.0
Q ss_pred hcCcCCCEEEecCCCCCCC----CcccccCCCCCCeEEc--cCCCCCC----CCchhhcCCCCCCEEEccCc
Q 038019 182 AKLRNMQTLWASDNPFTGK----IPDFIGNWTKLKSLRF--QGNSFQG----PIPSSLSKLASLESLQMSDI 243 (866)
Q Consensus 182 ~~l~~L~~L~L~~N~l~~~----~p~~l~~l~~L~~L~L--~~N~l~~----~~p~~~~~l~~L~~L~l~~n 243 (866)
...++|+.|++++|.++.. +...+...++|+.++| ++|.+.. .+...+...++|+.|++..+
T Consensus 71 ~~~~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~ 142 (166)
T d1io0a_ 71 KVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT 142 (166)
T ss_dssp HHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred hhcccchhhhhccccccchhHHHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCC
Confidence 3444555555555554421 2233444455555443 3344432 12334455666666666543
|