Citrus Sinensis ID: 038024

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------17
MCHYLIDISELSQVSRYNITLCKIHEISTAHTIGTTACFFMTKRLYNFFPGGGSDPGINPSFVVELKATCPQNGDVNVRLPIDRGSERVFDKQILQNIKDGFAVLESDSRLNDDIITNAIIDSYLGILSPIFGPSFEADFVESIVKMGHIGVKTGQQGHVRRLCAAFS
cccccccHHHHHHHHHccccccccHHcccccccccccccccccccccccccccccccccHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHccccccccHHHHcccccHHHHHHHHHHcccccccccHHHHHHHHHHHHccccccccccccccccccccc
cccccccHHHHHHHHHccccHHHHHHEHccHHccccHHHHHHHHHHcccccccccccccHHHHHHHHHHcccccccccEEccccccccHccHHHHHHHHHcccccccHHHHcccHcHHHHHHHHHHcccccccHHHHHHHHHHHHHHccccccccccccEEccccccc
mchylidiselsqvsRYNITLCKiheistahtigttACFFMTKRlynffpgggsdpginpsFVVELkatcpqngdvnvrlpidrgservfDKQILQNIKDGFavlesdsrlnddiITNAIIDSylgilspifgpsfeADFVESIVKMGhigvktgqqghVRRLCAAFS
MCHYLIDISELSQVSRYNITLCKiheistahtIGTTACFFMTKRLYNFFPGGGSDPGINPSFVVELKATCPQNGDVNVRLPIDRGSERVFDKQILQNIKDGFAVLESDSRLNDDIITNAIIDSYLGILSPIFGPSFEADFVESIVKMGHIgvktgqqghVRRLCAAFS
MCHYLIDISELSQVSRYNITLCKIHEISTAHTIGTTACFFMTKRLYNFFPGGGSDPGINPSFVVELKATCPQNGDVNVRLPIDRGSERVFDKQILQNIKDGFAVLESDSRLNDDIITNAIIDSYLGILSPIFGPSFEADFVESIVKMGHIGVKTGQQGHVRRLCAAFS
*CHYLIDISELSQVSRYNITLCKIHEISTAHTIGTTACFFMTKRLYNFFPGGGSDPGINPSFVVELKATCPQNGDVNVRLPIDRGSERVFDKQILQNIKDGFAVLESDSRLNDDIITNAIIDSYLGILSPIFGPSFEADFVESIVKMGHIGVKTGQQGHVRRLCA***
*CHYLIDISELSQVSRYNITLCKIHEISTAHTIGTTACFFMTKRLYNFFPGGGSDPGINPSFVVELKATCPQ*GDVNVRLPIDRGSERVFDKQILQNIKDGFAVLESDSRLNDDIITNAIIDSYLGILSPIFGPSFEADFVESIVKMGHIGVKTGQQGHVRRLCAAFS
MCHYLIDISELSQVSRYNITLCKIHEISTAHTIGTTACFFMTKRLYNFFPGGGSDPGINPSFVVELKATCPQNGDVNVRLPIDRGSERVFDKQILQNIKDGFAVLESDSRLNDDIITNAIIDSYLGILSPIFGPSFEADFVESIVKMGHIGVKTGQQGHVRRLCAAFS
MCHYLIDISELSQVSRYNITLCKIHEISTAHTIGTTACFFMTKRLYNFFPGGGSDPGINPSFVVELKATCPQNGDVNVRLPIDRGSERVFDKQILQNIKDGFAVLESDSRLNDDIITNAIIDSYLGILSPIFGPSFEADFVESIVKMGHIGVKTGQQGHVRRLC****
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oooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MCHYLIDISELSQVSRYNITLCKIHEISTAHTIGTTACFFMTKRLYNFFPGGGSDPGINPSFVVELKATCPQNGDVNVRLPIDRGSERVFDKQILQNIKDGFAVLESDSRLNDDIITNAIIDSYLGILSPIFGPSFEADFVESIVKMGHIGVKTGQQGHVRRLCAAFS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query168 2.2.26 [Sep-21-2011]
Q9SZH2326 Peroxidase 43 OS=Arabidop no no 0.845 0.435 0.690 2e-57
O49293319 Peroxidase 13 OS=Arabidop no no 0.773 0.407 0.525 3e-31
O80822328 Peroxidase 25 OS=Arabidop no no 0.839 0.429 0.451 3e-30
Q9XIV8330 Peroxidase N1 OS=Nicotian N/A no 0.839 0.427 0.422 7e-28
P22196330 Cationic peroxidase 2 OS= N/A no 0.821 0.418 0.431 1e-27
Q9FMI7330 Peroxidase 70 OS=Arabidop no no 0.821 0.418 0.4 9e-24
Q67Z07325 Peroxidase 2 OS=Arabidops no no 0.809 0.418 0.410 2e-22
P0DI10325 Peroxidase 1 OS=Arabidops no no 0.809 0.418 0.410 2e-22
Q43387328 Peroxidase 71 OS=Arabidop no no 0.791 0.405 0.388 4e-22
Q9FKA4319 Peroxidase 62 OS=Arabidop no no 0.797 0.420 0.378 1e-21
>sp|Q9SZH2|PER43_ARATH Peroxidase 43 OS=Arabidopsis thaliana GN=PER43 PE=2 SV=2 Back     alignment and function desciption
 Score =  221 bits (562), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 98/142 (69%), Positives = 123/142 (86%)

Query: 27  ISTAHTIGTTACFFMTKRLYNFFPGGGSDPGINPSFVVELKATCPQNGDVNVRLPIDRGS 86
           +S AHTIGTTACFFM+KRLY+F PGG  DP INP+F+ EL   CPQNGD+NVRLPIDR S
Sbjct: 185 LSAAHTIGTTACFFMSKRLYDFLPGGQPDPTINPTFLPELTTQCPQNGDINVRLPIDRFS 244

Query: 87  ERVFDKQILQNIKDGFAVLESDSRLNDDIITNAIIDSYLGILSPIFGPSFEADFVESIVK 146
           ER+FDKQILQNIKDGFAVL++D+ L +D+ T  ++DSYLG+L+P FGP+FE+DFV++IVK
Sbjct: 245 ERLFDKQILQNIKDGFAVLQTDAGLYEDVTTRQVVDSYLGMLNPFFGPTFESDFVKAIVK 304

Query: 147 MGHIGVKTGQQGHVRRLCAAFS 168
           MG IGVKTG +G +RR+C+AF+
Sbjct: 305 MGKIGVKTGFKGEIRRVCSAFN 326
Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress. These functions might be dependent on each isozyme/isoform in each plant tissue.
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 1EC: 1EC: .EC: 1EC: .EC: 7
>sp|O49293|PER13_ARATH Peroxidase 13 OS=Arabidopsis thaliana GN=PER13 PE=1 SV=2 Back     alignment and function description
>sp|O80822|PER25_ARATH Peroxidase 25 OS=Arabidopsis thaliana GN=PER25 PE=2 SV=2 Back     alignment and function description
>sp|Q9XIV8|PERN1_TOBAC Peroxidase N1 OS=Nicotiana tabacum GN=poxN1 PE=1 SV=1 Back     alignment and function description
>sp|P22196|PER2_ARAHY Cationic peroxidase 2 OS=Arachis hypogaea GN=PNC2 PE=2 SV=1 Back     alignment and function description
>sp|Q9FMI7|PER70_ARATH Peroxidase 70 OS=Arabidopsis thaliana GN=PER70 PE=2 SV=1 Back     alignment and function description
>sp|Q67Z07|PER2_ARATH Peroxidase 2 OS=Arabidopsis thaliana GN=PER2 PE=2 SV=1 Back     alignment and function description
>sp|P0DI10|PER1_ARATH Peroxidase 1 OS=Arabidopsis thaliana GN=PER1 PE=1 SV=1 Back     alignment and function description
>sp|Q43387|PER71_ARATH Peroxidase 71 OS=Arabidopsis thaliana GN=PER71 PE=1 SV=1 Back     alignment and function description
>sp|Q9FKA4|PER62_ARATH Peroxidase 62 OS=Arabidopsis thaliana GN=PER62 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query168
19698450 323 class III peroxidase [Gossypium hirsutum 0.845 0.439 0.725 1e-57
15236089 371 peroxidase 43 [Arabidopsis thaliana] gi| 0.845 0.382 0.690 5e-56
26397928 326 RecName: Full=Peroxidase 43; Short=Atper 0.845 0.435 0.690 9e-56
297803506 370 hypothetical protein ARALYDRAFT_329078 [ 0.845 0.383 0.690 1e-55
356557535 831 PREDICTED: uncharacterized protein LOC54 0.845 0.170 0.706 2e-53
5002236 341 peroxidase, partial [Glycine max] 0.892 0.439 0.675 3e-53
356528767 558 PREDICTED: peroxidase 43-like [Glycine m 0.845 0.254 0.720 6e-53
225447842 328 PREDICTED: peroxidase 43-like [Vitis vin 0.845 0.432 0.676 2e-52
296081516 323 unnamed protein product [Vitis vinifera] 0.845 0.439 0.676 3e-52
255635215 323 unknown [Glycine max] 0.839 0.436 0.690 2e-50
>gi|19698450|gb|AAL93153.1|AF485267_1 class III peroxidase [Gossypium hirsutum] Back     alignment and taxonomy information
 Score =  227 bits (579), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 103/142 (72%), Positives = 122/142 (85%)

Query: 27  ISTAHTIGTTACFFMTKRLYNFFPGGGSDPGINPSFVVELKATCPQNGDVNVRLPIDRGS 86
           +S AHTIGTTACFFMTKRLY F P GGSDP I+P F+ +L++ CPQNGDVNVRLP+DRGS
Sbjct: 182 LSAAHTIGTTACFFMTKRLYKFSPAGGSDPAISPDFLPQLQSICPQNGDVNVRLPMDRGS 241

Query: 87  ERVFDKQILQNIKDGFAVLESDSRLNDDIITNAIIDSYLGILSPIFGPSFEADFVESIVK 146
           ER FDKQIL NI++GFAVLESD+RL DD  T  ++DSY GIL+PIFGPSFE+DFV+SIVK
Sbjct: 242 ERTFDKQILDNIRNGFAVLESDARLYDDETTRMVVDSYFGILTPIFGPSFESDFVDSIVK 301

Query: 147 MGHIGVKTGQQGHVRRLCAAFS 168
           MG IGVKTG +G +RR+C AF+
Sbjct: 302 MGQIGVKTGSKGEIRRVCTAFN 323

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|15236089|ref|NP_194328.1| peroxidase 43 [Arabidopsis thaliana] gi|7433052|pir||T04253 peroxidase homolog F20B18.90 - Arabidopsis thaliana gi|4538927|emb|CAB39663.1| putative peroxidase [Arabidopsis thaliana] gi|7269449|emb|CAB79453.1| putative peroxidase [Arabidopsis thaliana] gi|332659739|gb|AEE85139.1| peroxidase 43 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|26397928|sp|Q9SZH2.2|PER43_ARATH RecName: Full=Peroxidase 43; Short=Atperox P43; Flags: Precursor Back     alignment and taxonomy information
>gi|297803506|ref|XP_002869637.1| hypothetical protein ARALYDRAFT_329078 [Arabidopsis lyrata subsp. lyrata] gi|297315473|gb|EFH45896.1| hypothetical protein ARALYDRAFT_329078 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|356557535|ref|XP_003547071.1| PREDICTED: uncharacterized protein LOC547549 [Glycine max] Back     alignment and taxonomy information
>gi|5002236|gb|AAD37375.1|AF145349_1 peroxidase, partial [Glycine max] Back     alignment and taxonomy information
>gi|356528767|ref|XP_003532969.1| PREDICTED: peroxidase 43-like [Glycine max] Back     alignment and taxonomy information
>gi|225447842|ref|XP_002270950.1| PREDICTED: peroxidase 43-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|296081516|emb|CBI20039.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255635215|gb|ACU17962.1| unknown [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query168
TAIR|locus:2164431330 AT5G64110 [Arabidopsis thalian 0.821 0.418 0.4 2.3e-23
TAIR|locus:2817952325 AT1G05240 [Arabidopsis thalian 0.809 0.418 0.410 1e-22
TAIR|locus:2207215325 AT1G05250 [Arabidopsis thalian 0.809 0.418 0.410 1e-22
TAIR|locus:2164865319 AT5G39580 [Arabidopsis thalian 0.797 0.420 0.392 4.3e-22
TAIR|locus:2164366328 AT5G64120 [Arabidopsis thalian 0.773 0.396 0.397 1.1e-21
TAIR|locus:2164426331 AT5G64100 [Arabidopsis thalian 0.797 0.404 0.434 1.9e-21
TAIR|locus:2120061329 AT4G37530 [Arabidopsis thalian 0.934 0.477 0.349 2.4e-21
TAIR|locus:2128921325 AT4G30170 [Arabidopsis thalian 0.916 0.473 0.337 2.1e-20
TAIR|locus:2120051329 AT4G37520 [Arabidopsis thalian 0.958 0.489 0.329 3.5e-20
TAIR|locus:2057180349 AT2G38380 [Arabidopsis thalian 0.791 0.381 0.35 4.6e-19
TAIR|locus:2164431 AT5G64110 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 269 (99.8 bits), Expect = 2.3e-23, P = 2.3e-23
 Identities = 56/140 (40%), Positives = 78/140 (55%)

Query:    27 ISTAHTIGTTACFFMTKRLYNFFPGGGSDPGINPSFVVELKATCPQNGDVNVRLPIDRGS 86
             ++  HTIGT  C     R +N+   G  DP I PSFV  ++A CP NGD   R+ +D GS
Sbjct:   191 LAAGHTIGTAGCIVFRDRFFNYDNTGSPDPTIAPSFVPLIQAQCPLNGDPATRVVLDTGS 250

Query:    87 ERVFDKQILQNIKDGFAVLESDSRLNDDIITNAIIDSYLGILSPIFGPSFEADFVESIVK 146
                FD   L N+K+G  +LESD  L  ++ T  I++  LG+  P     F  +F  S+ K
Sbjct:   251 GDQFDTSYLNNLKNGRGLLESDQVLWTNLETRPIVERLLGLRFPFL--IFGLEFARSMTK 308

Query:   147 MGHIGVKTGQQGHVRRLCAA 166
             M  I +KTG  G +RR+C+A
Sbjct:   309 MSQIEIKTGLDGEIRRVCSA 328
GO:0004601 "peroxidase activity" evidence=IEA;ISS
GO:0005576 "extracellular region" evidence=ISM
GO:0006979 "response to oxidative stress" evidence=IEA
GO:0020037 "heme binding" evidence=IEA
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0016020 "membrane" evidence=IDA
TAIR|locus:2817952 AT1G05240 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2207215 AT1G05250 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2164865 AT5G39580 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2164366 AT5G64120 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2164426 AT5G64100 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2120061 AT4G37530 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2128921 AT4G30170 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2120051 AT4G37520 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2057180 AT2G38380 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
4th Layer1.11.1.70.824
3rd Layer1.11.10.766

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query168
cd00693298 cd00693, secretory_peroxidase, Horseradish peroxid 9e-44
PLN03030324 PLN03030, PLN03030, cationic peroxidase; Provision 6e-41
>gnl|CDD|173827 cd00693, secretory_peroxidase, Horseradish peroxidase and related secretory plant peroxidases Back     alignment and domain information 
 Score =  146 bits (370), Expect = 9e-44
 Identities = 53/141 (37%), Positives = 76/141 (53%), Gaps = 5/141 (3%)

Query: 27  ISTAHTIGTTACFFMTKRLYNFFPGGGSDPGINPSFVVELKATCPQNGDVNVRLPIDRGS 86
           +S AHTIG   C   + RLYNF   G  DP ++P++  +L+  CP  GD +  +P+D G+
Sbjct: 163 LSGAHTIGRAHCSSFSDRLYNFSGTGDPDPTLDPAYAAQLRKKCPAGGDDDTLVPLDPGT 222

Query: 87  ERVFDKQILQNIKDGFAVLESDSRLNDDIITNAIIDSYLGILSPIFGPSFEADFVESIVK 146
              FD    +N+  G  +L SD  L  D  T AI++ Y          +F  DF  ++VK
Sbjct: 223 PNTFDNSYYKNLLAGRGLLTSDQALLSDPRTRAIVNRYAAN-----QDAFFRDFAAAMVK 277

Query: 147 MGHIGVKTGQQGHVRRLCAAF 167
           MG+IGV TG QG +R+ C   
Sbjct: 278 MGNIGVLTGSQGEIRKNCRVV 298

Secretory peroxidases belong to class III of the plant heme-dependent peroxidase superfamily. All members of the superfamily share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Class III peroxidases are found in the extracellular space or in the vacuole in plants where they have been implicated in hydrogen peroxide detoxification, auxin catabolism and lignin biosynthesis, and stress response. Class III peroxidases contain four conserved disulphide bridges and two conserved calcium binding sites. Length = 298
>gnl|CDD|215545 PLN03030, PLN03030, cationic peroxidase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 168
PLN03030324 cationic peroxidase; Provisional 100.0
cd00693298 secretory_peroxidase Horseradish peroxidase and re 100.0
cd00649409 catalase_peroxidase_1 N-terminal catalytic domain 100.0
PLN02608289 L-ascorbate peroxidase 100.0
PLN02879251 L-ascorbate peroxidase 100.0
cd00691253 ascorbate_peroxidase Ascorbate peroxidases and cyt 99.98
PF00141230 peroxidase: Peroxidase; InterPro: IPR002016 Peroxi 99.98
cd00692328 ligninase Ligninase and other manganese-dependent 99.98
PLN02364250 L-ascorbate peroxidase 1 99.97
TIGR00198 716 cat_per_HPI catalase/peroxidase HPI. Note that the 99.97
PRK15061 726 catalase/hydroperoxidase HPI(I); Provisional 99.97
cd00314255 plant_peroxidase_like Heme-dependent peroxidases s 99.95
cd08200297 catalase_peroxidase_2 C-terminal non-catalytic dom 99.72
cd08201264 plant_peroxidase_like_1 Uncharacterized family of 99.71
TIGR00198716 cat_per_HPI catalase/peroxidase HPI. Note that the 99.51
PRK15061726 catalase/hydroperoxidase HPI(I); Provisional 99.49
COG0376 730 KatG Catalase (peroxidase I) [Inorganic ion transp 99.39
COG0376730 KatG Catalase (peroxidase I) [Inorganic ion transp 83.44
>PLN03030 cationic peroxidase; Provisional Back     alignment and domain information 
Probab=100.00  E-value=1.8e-59  Score=401.77  Aligned_cols=164  Identities=40%  Similarity=0.708  Sum_probs=151.2

Q ss_pred             CCCCChHHHH-HHHHhCCCccchhhhccccccccccCccccccccccCCCC-CCCCCCCHHHHHHHHhhCCCCCCCCccC
Q 038024            3 HYLIDISELS-QVSRYNITLCKIHEISTAHTIGTTACFFMTKRLYNFFPGG-GSDPGINPSFVVELKATCPQNGDVNVRL   80 (168)
Q Consensus         3 ~~~~~~~~li-~F~~kGl~~~dlVaLsGaHTiG~ahC~~f~~Rlynf~~~~-~~dp~~~~~~~~~L~~~Cp~~~~~~~~~   80 (168)
                      .|++++++|+ .|++|||+.+|||+||||||||++||.+|.+|||||++++ .+||+||+.|+.+|++.||..++.+..+
T Consensus       158 ~p~~~~~~l~~~F~~~Gl~~~DlVaLsGAHTiG~ahC~~f~~Rlynf~~~~~~~Dp~~d~~~~~~L~~~Cp~~~~~~~~~  237 (324)
T PLN03030        158 GFTDSIDVQKQKFAAKGLNTQDLVTLVGGHTIGTTACQFFRYRLYNFTTTGNGADPSIDASFVPQLQALCPQNGDGSRRI  237 (324)
T ss_pred             CCCCCHHHHHHHHHHcCCCHHHheeeeeccccceeeeeccccccccccCCCCCCCCchhHHHHHHHhccCCCCCCCCccc
Confidence            5789999999 9999999999999999999999999999999999999875 5899999999999999999644434578


Q ss_pred             cCCCCCchhchHHHHHHhhcCcccccchhhhhcCcchHHHHHHHhcccCCCCCc-chHHHHHHHHHHhcCCCCCCCCCCc
Q 038024           81 PIDRGSERVFDKQILQNIKDGFAVLESDSRLNDDIITNAIIDSYLGILSPIFGP-SFEADFVESIVKMGHIGVKTGQQGH  159 (168)
Q Consensus        81 ~lD~~Tp~~FDn~Yy~~l~~~~glL~SD~~L~~d~~T~~~V~~~a~~~~~~~~~-~F~~~Fa~amvKMg~i~vltG~~Ge  159 (168)
                      +||+.||.+|||+||+||++++|||+|||+|+.|++|+++|++||..  +..++ .|+++|++||+|||+|+||||.+||
T Consensus       238 ~lD~~Tp~~FDn~Yy~nll~~rGlL~SDq~L~~d~~T~~~V~~~A~~--~~~~~~~F~~~Fa~AmvKMg~i~VlTG~~GE  315 (324)
T PLN03030        238 ALDTGSSNRFDASFFSNLKNGRGILESDQKLWTDASTRTFVQRFLGV--RGLAGLNFNVEFGRSMVKMSNIGVKTGTNGE  315 (324)
T ss_pred             cCCCCCCcccccHHHHHHHhcCCCcCCchHhhcCccHHHHHHHHhcc--cccchhhhHHHHHHHHHHHccCCCCCCCCCc
Confidence            99999999999999999999999999999999999999999999970  00026 8999999999999999999999999


Q ss_pred             ccccCccCC
Q 038024          160 VRRLCAAFS  168 (168)
Q Consensus       160 IR~~C~~vn  168 (168)
                      ||++|++||
T Consensus       316 IRk~C~~vN  324 (324)
T PLN03030        316 IRKVCSAIN  324 (324)
T ss_pred             eeccccccC
Confidence            999999998

>cd00693 secretory_peroxidase Horseradish peroxidase and related secretory plant peroxidases Back     alignment and domain information
>cd00649 catalase_peroxidase_1 N-terminal catalytic domain of catalase-peroxidases Back     alignment and domain information
>PLN02608 L-ascorbate peroxidase Back     alignment and domain information
>PLN02879 L-ascorbate peroxidase Back     alignment and domain information
>cd00691 ascorbate_peroxidase Ascorbate peroxidases and cytochrome C peroxidases Back     alignment and domain information
>PF00141 peroxidase: Peroxidase; InterPro: IPR002016 Peroxidases are haem-containing enzymes that use hydrogen peroxide as the electron acceptor to catalyse a number of oxidative reactions Back     alignment and domain information
>cd00692 ligninase Ligninase and other manganese-dependent fungal peroxidases Back     alignment and domain information
>PLN02364 L-ascorbate peroxidase 1 Back     alignment and domain information
>TIGR00198 cat_per_HPI catalase/peroxidase HPI Back     alignment and domain information
>PRK15061 catalase/hydroperoxidase HPI(I); Provisional Back     alignment and domain information
>cd00314 plant_peroxidase_like Heme-dependent peroxidases similar to plant peroxidases Back     alignment and domain information
>cd08200 catalase_peroxidase_2 C-terminal non-catalytic domain of catalase-peroxidases Back     alignment and domain information
>cd08201 plant_peroxidase_like_1 Uncharacterized family of plant peroxidase-like proteins Back     alignment and domain information
>TIGR00198 cat_per_HPI catalase/peroxidase HPI Back     alignment and domain information
>PRK15061 catalase/hydroperoxidase HPI(I); Provisional Back     alignment and domain information
>COG0376 KatG Catalase (peroxidase I) [Inorganic ion transport and metabolism] Back     alignment and domain information
>COG0376 KatG Catalase (peroxidase I) [Inorganic ion transport and metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query168
3hdl_A304 Crystal Structure Of Highly Glycosylated Peroxidase 2e-15
1qgj_A300 Arabidopsis Thaliana Peroxidase N Length = 300 7e-15
3atj_A309 Heme Ligand Mutant Of Recombinant Horseradish Perox 3e-14
1w4w_A323 Ferric Horseradish Peroxidase C1a In Complex With F 5e-14
1atj_A306 Recombinant Horseradish Peroxidase C1a Length = 306 5e-14
2atj_A308 Recombinant Horseradish Peroxidase Complex With Ben 5e-14
6atj_A308 Recombinant Horseradish Peroxidase C Complex With F 5e-14
1gwo_A309 Recombinant Horseradish Peroxidase C1a Ala170gln Le 6e-14
1gwu_A309 Recombinant Horseradish Peroxidase C1a Ala140gly Le 6e-14
1kzm_A308 Distal Heme Pocket Mutant (r38s/h42e) Of Recombinan 6e-14
4atj_A309 Distal Heme Pocket Mutant (H42e) Of Recombinant Hor 6e-14
1pa2_A306 Arabidopsis Thaliana Peroxidase A2 Length = 306 1e-13
2ylj_A306 Horse Radish Peroxidase, Mutant S167y Length = 306 1e-13
1gw2_A308 Recombinant Horseradish Peroxidase C1a Thr171ser In 1e-13
1gx2_A309 Recombinant Horseradish Peroxidase Phe209ser Comple 6e-13
1sch_A294 Peanut Peroxidase Length = 294 6e-13
1bgp_A309 Crystal Structure Of Barley Grain Peroxidase 1 Leng 2e-11
1fhf_A304 The Structure Of Soybean Peroxidase Length = 304 5e-11
4a5g_A308 Raphanus Sativus Anionic Peroxidase. Length = 308 2e-10
>pdb|3HDL|A Chain A, Crystal Structure Of Highly Glycosylated Peroxidase From Royal Palm Tree Length = 304 Back     alignment and structure 
Iteration: 1

 Score = 78.6 bits (192), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 46/149 (30%), Positives = 75/149 (50%), Gaps = 7/149 (4%)
Query: 19  ITLCKIHEISTAHTIGTTACFFMTKRLYNFFPGGGSDPGINPSFVVELKATCPQNGD--V 76
           +T  ++  +S AH+IG   C   T RLYNF  G G DP ++PS+   L+ TCP N     
Sbjct: 157 LTADEMVTLSGAHSIGVAHCSSFTNRLYNFNSGSGIDPTLSPSYAALLRNTCPANSTRFT 216
Query: 77  NVRLPIDRGSERVFDKQILQNIKDGFAVLESDSRLNDDIITNAIIDSYLGILSPIFGPSF 136
            + + +D  +  V D      ++    +L SD  L  +   +A + +    L+     ++
Sbjct: 217 PITVSLDIITPSVLDNMYYTGVQLTLGLLTSDQALVTEANLSAAVKANAMNLT-----AW 271
Query: 137 EADFVESIVKMGHIGVKTGQQGHVRRLCA 165
            + F +++VKMG I V TG QG +R  C+
Sbjct: 272 ASKFAQAMVKMGQIEVLTGTQGEIRTNCS 300
>pdb|1QGJ|A Chain A, Arabidopsis Thaliana Peroxidase N Length = 300 Back     alignment and structure
>pdb|3ATJ|A Chain A, Heme Ligand Mutant Of Recombinant Horseradish Peroxidase In Complex With Benzhydroxamic Acid Length = 309 Back     alignment and structure
>pdb|1W4W|A Chain A, Ferric Horseradish Peroxidase C1a In Complex With Formate Length = 323 Back     alignment and structure
>pdb|1ATJ|A Chain A, Recombinant Horseradish Peroxidase C1a Length = 306 Back     alignment and structure
>pdb|2ATJ|A Chain A, Recombinant Horseradish Peroxidase Complex With Benzhydroxamic Acid Length = 308 Back     alignment and structure
>pdb|6ATJ|A Chain A, Recombinant Horseradish Peroxidase C Complex With Ferulic Acid Length = 308 Back     alignment and structure
>pdb|1GWO|A Chain A, Recombinant Horseradish Peroxidase C1a Ala170gln Length = 309 Back     alignment and structure
>pdb|1GWU|A Chain A, Recombinant Horseradish Peroxidase C1a Ala140gly Length = 309 Back     alignment and structure
>pdb|1KZM|A Chain A, Distal Heme Pocket Mutant (r38s/h42e) Of Recombinant Horseradish Peroxidase C (hrp C) Length = 308 Back     alignment and structure
>pdb|4ATJ|A Chain A, Distal Heme Pocket Mutant (H42e) Of Recombinant Horseradish Peroxidase In Complex With Benzhydroxamic Acid Length = 309 Back     alignment and structure
>pdb|1PA2|A Chain A, Arabidopsis Thaliana Peroxidase A2 Length = 306 Back     alignment and structure
>pdb|2YLJ|A Chain A, Horse Radish Peroxidase, Mutant S167y Length = 306 Back     alignment and structure
>pdb|1GW2|A Chain A, Recombinant Horseradish Peroxidase C1a Thr171ser In Complex With Ferulic Acid Length = 308 Back     alignment and structure
>pdb|1GX2|A Chain A, Recombinant Horseradish Peroxidase Phe209ser Complex With Benzhydroxamic Acid Length = 309 Back     alignment and structure
>pdb|1SCH|A Chain A, Peanut Peroxidase Length = 294 Back     alignment and structure
>pdb|1BGP|A Chain A, Crystal Structure Of Barley Grain Peroxidase 1 Length = 309 Back     alignment and structure
>pdb|1FHF|A Chain A, The Structure Of Soybean Peroxidase Length = 304 Back     alignment and structure
>pdb|4A5G|A Chain A, Raphanus Sativus Anionic Peroxidase. Length = 308 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query168
1pa2_A306 Peroxidase, ATP A2; oxidoreductase; HET: HEM; 1.45 3e-43
1gwu_A309 Peroxidase C1A; oxidoreductase, glycoprotein, heme 9e-42
1fhf_A304 SEED coat peroxidase; oxidoreductase; HET: HEM; 2. 4e-41
3hdl_A304 Royal PALM TREE peroxidase; glycosylated, oxidored 7e-40
1qgj_A300 Peroxidase N; oxidoreductase; HET: HEM GSH; 1.90A 8e-40
1sch_A294 PNP, peanut peroxidase, major cationic isozyme; ca 1e-38
1bgp_A309 Barley grain peroxidase; chromoprotein, oxidoreduc 7e-37
3m5q_A357 Manganese peroxidase 1; heme, Mn(II)-binding site, 8e-10
2vcn_A261 Ascorbate peroxidase; INH, APX, isoniazid, oxidore 2e-08
1iyn_A295 Chloroplastic ascorbate peroxidase; hydrogen perox 2e-08
3fmu_A331 VersatIle peroxidase VPL2; class II (fungal) perox 8e-04
>1pa2_A Peroxidase, ATP A2; oxidoreductase; HET: HEM; 1.45A {Arabidopsis thaliana} SCOP: a.93.1.1 PDB: 1qo4_A* Length = 306 Back     alignment and structure
 Score =  144 bits (365), Expect = 3e-43
 Identities = 43/142 (30%), Positives = 62/142 (43%), Gaps = 7/142 (4%)

Query: 28  STAHTIGTTACFFMTKRLYNFFPGGGSDPGINPSFVVELKATCPQNGDVNVRLPIDRGSE 87
           S AHT G   C     RL+NF   G  DP +N + +  L+  CPQNG  +    +D  + 
Sbjct: 167 SGAHTFGRARCGVFNNRLFNFSGTGNPDPTLNSTLLSTLQQLCPQNGSASTITNLDLSTP 226

Query: 88  RVFDKQILQNIKDGFAVLESDSRLNDDII--TNAIIDSYLGILSPIFGPSFEADFVESIV 145
             FD     N++    +L+SD  L       T AI+ S+           F   F +S++
Sbjct: 227 DAFDNNYFANLQSNDGLLQSDQELFSTTGSSTIAIVTSFASN-----QTLFFQAFAQSMI 281

Query: 146 KMGHIGVKTGQQGHVRRLCAAF 167
            MG+I   TG  G +R  C   
Sbjct: 282 NMGNISPLTGSNGEIRLDCKKV 303
>1gwu_A Peroxidase C1A; oxidoreductase, glycoprotein, heme, multigene family, signal,; HET: HEM; 1.31A {Armoracia rusticana} SCOP: a.93.1.1 PDB: 1w4w_A* 1w4y_A* 1gwo_A* 2atj_A* 1gwt_A* 3atj_A* 1gx2_A* 7atj_A* 1h55_A* 1h58_A* 1h5a_A* 1h5c_A* 1h5d_A* 1h5e_A* 1h5f_A* 1h57_A* 1h5h_A* 1h5i_A* 1h5j_A* 1h5k_A* ... Length = 309 Back     alignment and structure
>1fhf_A SEED coat peroxidase; oxidoreductase; HET: HEM; 2.80A {Glycine max} SCOP: a.93.1.1 Length = 304 Back     alignment and structure
>3hdl_A Royal PALM TREE peroxidase; glycosylated, oxidoreductase; HET: HEM MES NAG FUC MAN; 1.85A {Roystonea regia} Length = 304 Back     alignment and structure
>1qgj_A Peroxidase N; oxidoreductase; HET: HEM GSH; 1.90A {Arabidopsis thaliana} SCOP: a.93.1.1 Length = 300 Back     alignment and structure
>1sch_A PNP, peanut peroxidase, major cationic isozyme; calcium binding, glycosylation, oxidoreductase; HET: NAG HEM; 2.56A {Arachis hypogaea} SCOP: a.93.1.1 Length = 294 Back     alignment and structure
>1bgp_A Barley grain peroxidase; chromoprotein, oxidoreductase; HET: HEM; 1.90A {Hordeum vulgare} SCOP: a.93.1.1 Length = 309 Back     alignment and structure
>3m5q_A Manganese peroxidase 1; heme, Mn(II)-binding site, Ca(II)-binding site, glycosylation, ultrahigh resolution, calcium; HET: NAG MAN HEM; 0.93A {Phanerochaete chrysosporium} PDB: 1mnp_A* 1yyg_A* 1yzp_A* 1yzr_A* 1yyd_A* 3m8m_A* 1mn1_A* 1mn2_A* Length = 357 Back     alignment and structure
>2vcn_A Ascorbate peroxidase; INH, APX, isoniazid, oxidoreductase; HET: HEM ISZ; 1.20A {Glycine max} PDB: 2ggn_X* 2ghd_X* 2ghe_X* 2ghc_X* 2vnx_X* 2vnz_X* 2vo2_X* 2wd4_A* 1oaf_A* 1oag_A* 1v0h_X* 2ghh_X* 2ghk_X* 2vcf_X* 2cl4_X* 2vcs_A* 2xi6_A* 2xif_A* 2xih_A* 2xj6_A* ... Length = 261 Back     alignment and structure
>1iyn_A Chloroplastic ascorbate peroxidase; hydrogen peroxide, tobacco plant, stromal ascorbate peroxidase, oxidoreductase; HET: HEM; 1.60A {Nicotiana tabacum} SCOP: a.93.1.1 Length = 295 Back     alignment and structure
>3fmu_A VersatIle peroxidase VPL2; class II (fungal) peroxidases, protoporphyrin IX, electron T lignin peroxidase, lignin degradation; HET: HEM; 1.04A {Pleurotus eryngii} PDB: 3fjw_A* 2boq_A* 3fm1_A* 3fm4_A* 3fm6_A* 3fkg_A* 2w23_A* 2vka_A* Length = 331 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query168
3hdl_A304 Royal PALM TREE peroxidase; glycosylated, oxidored 100.0
1fhf_A304 SEED coat peroxidase; oxidoreductase; HET: HEM; 2. 100.0
1pa2_A306 Peroxidase, ATP A2; oxidoreductase; HET: HEM; 1.45 100.0
1gwu_A309 Peroxidase C1A; oxidoreductase, glycoprotein, heme 100.0
1qgj_A300 Peroxidase N; oxidoreductase; HET: HEM GSH; 1.90A 100.0
1sch_A294 PNP, peanut peroxidase, major cationic isozyme; ca 100.0
1bgp_A309 Barley grain peroxidase; chromoprotein, oxidoreduc 100.0
1iyn_A295 Chloroplastic ascorbate peroxidase; hydrogen perox 100.0
1llp_A343 LIP4.15, lignin peroxidase; heme protein, glyco pr 100.0
2e39_A344 Peroxidase; heme protein, coordination geometry of 100.0
3q3u_A338 Lignin peroxidase; oxidoreductase; HET: HEM; 1.85A 100.0
3fmu_A331 VersatIle peroxidase VPL2; class II (fungal) perox 100.0
3m5q_A357 Manganese peroxidase 1; heme, Mn(II)-binding site, 100.0
2cca_A 740 Peroxidase/catalase T; oxidoreductase, catalase-pe 100.0
1itk_A 731 Catalase-peroxidase; heme protein, oxidoreductase; 100.0
1ub2_A 720 Catalase-peroxidase; KATG, cyanobacteria, oxidored 100.0
3riv_A271 Ascorbate peroxidase; alpha helical bundle, heme p 100.0
2vcn_A261 Ascorbate peroxidase; INH, APX, isoniazid, oxidore 100.0
3n3r_A 748 Catalase-peroxidase; E198A variant, tuberclosis, i 100.0
3ut2_A 764 Catalase-peroxidase 2; KATG, fungal, heme enzyme, 100.0
3vli_A 737 Catalase-peroxidase 2; oxidoreductase; HET: HEM; 1 100.0
3e2o_A294 CCP, cytochrome C peroxidase; cytochrome C peroxid 99.97
1u2k_A309 Peroxidase/catalase HPI; KATG, catalase-peroxidase 99.95
1ub2_A720 Catalase-peroxidase; KATG, cyanobacteria, oxidored 99.92
3vli_A737 Catalase-peroxidase 2; oxidoreductase; HET: HEM; 1 99.92
1itk_A731 Catalase-peroxidase; heme protein, oxidoreductase; 99.91
3n3r_A748 Catalase-peroxidase; E198A variant, tuberclosis, i 99.9
3ut2_A764 Catalase-peroxidase 2; KATG, fungal, heme enzyme, 99.9
2cca_A740 Peroxidase/catalase T; oxidoreductase, catalase-pe 99.9
3rrw_A268 Thylakoid lumenal 29 kDa protein, chloroplastic; c 99.57
>3hdl_A Royal PALM TREE peroxidase; glycosylated, oxidoreductase; HET: HEM MES NAG FUC MAN; 1.85A {Roystonea regia} SCOP: a.93.1.0 Back     alignment and structure
Probab=100.00  E-value=1.6e-61  Score=411.27  Aligned_cols=160  Identities=29%  Similarity=0.519  Sum_probs=155.3

Q ss_pred             CCCCChHHHH-HHHHhCCCccchhhhccccccccccCccccccccccCCCCCCCCCCCHHHHHHHHhhCCCCCC--CCcc
Q 038024            3 HYLIDISELS-QVSRYNITLCKIHEISTAHTIGTTACFFMTKRLYNFFPGGGSDPGINPSFVVELKATCPQNGD--VNVR   79 (168)
Q Consensus         3 ~~~~~~~~li-~F~~kGl~~~dlVaLsGaHTiG~ahC~~f~~Rlynf~~~~~~dp~~~~~~~~~L~~~Cp~~~~--~~~~   79 (168)
                      .|+.++++|+ .|++|||+.+||||||||||||++||.+|.+|||||+|++.+||+|++.|++.|++.||.+++  .+..
T Consensus       140 ~p~~~~~~l~~~F~~~Gl~~~d~VaLsGaHTiG~ahC~~f~~Rly~f~~~~~~DP~ld~~~a~~L~~~Cp~~~~~~~~~~  219 (304)
T 3hdl_A          140 SPLFNATQLINSFANKTLTADEMVTLSGAHSIGVAHCSSFTNRLYNFNSGSGIDPTLSPSYAALLRNTCPANSTRFTPIT  219 (304)
T ss_dssp             CTTCCHHHHHHHHHTTTCCHHHHHHHGGGGGSSEEEGGGTGGGTSSCSSSSSSCTTSCHHHHHHHHHHSCTTCCTTSCCE
T ss_pred             CCCCCHHHHHHHHHHcCCCHHHhhhhhccccccccccchhhhhhcccCCCCCCCCcccHHHHHHHhccCCCCCCCCCccc
Confidence            4789999999 999999999999999999999999999999999999999899999999999999999998766  6778


Q ss_pred             CcCCCCCchhchHHHHHHhhcCcccccchhhhhcCcchHHHHHHHhcccCCCCCc-chHHHHHHHHHHhcCCCCCCCCCC
Q 038024           80 LPIDRGSERVFDKQILQNIKDGFAVLESDSRLNDDIITNAIIDSYLGILSPIFGP-SFEADFVESIVKMGHIGVKTGQQG  158 (168)
Q Consensus        80 ~~lD~~Tp~~FDn~Yy~~l~~~~glL~SD~~L~~d~~T~~~V~~~a~~~~~~~~~-~F~~~Fa~amvKMg~i~vltG~~G  158 (168)
                      ++||+.||.+|||+||+||+.++|||+|||+|+.|++|+++|+.||.      || .|+++|++||+|||+|+||||++|
T Consensus       220 ~~lD~~TP~~FDN~Yy~nL~~~~glL~SDq~L~~d~~t~~~V~~yA~------~~~~F~~~Fa~AmvKmg~igv~tg~~G  293 (304)
T 3hdl_A          220 VSLDIITPSVLDNMYYTGVQLTLGLLTSDQALVTEANLSAAVKANAM------NLTAWASKFAQAMVKMGQIEVLTGTQG  293 (304)
T ss_dssp             EESCSSSTTSCSTHHHHHHHTTCCCSHHHHGGGSSHHHHHHHHHHHH------CHHHHHHHHHHHHHHHTTTTCCCTTSS
T ss_pred             cCCCCCCcccccHHHHHHHHhCcCCCCCCHHHhcCccHHHHHHHhcc------CHHHHHHHHHHHHHHHHhcCCCCCCCC
Confidence            89999999999999999999999999999999999999999999999      99 999999999999999999999999


Q ss_pred             cccccCccCC
Q 038024          159 HVRRLCAAFS  168 (168)
Q Consensus       159 eIR~~C~~vn  168 (168)
                      |||++|++||
T Consensus       294 eIR~~C~~~N  303 (304)
T 3hdl_A          294 EIRTNCSVVN  303 (304)
T ss_dssp             BCCSBTTBCC
T ss_pred             eeeCCccccC
Confidence            9999999998
>1fhf_A SEED coat peroxidase; oxidoreductase; HET: HEM; 2.80A {Glycine max} SCOP: a.93.1.1 Back     alignment and structure
>1pa2_A Peroxidase, ATP A2; oxidoreductase; HET: HEM; 1.45A {Arabidopsis thaliana} SCOP: a.93.1.1 PDB: 1qo4_A* Back     alignment and structure
>1gwu_A Peroxidase C1A; oxidoreductase, glycoprotein, heme, multigene family, signal,; HET: HEM; 1.31A {Armoracia rusticana} SCOP: a.93.1.1 PDB: 1w4w_A* 1w4y_A* 1gwo_A* 2atj_A* 1gwt_A* 3atj_A* 1gx2_A* 7atj_A* 1h55_A* 1h58_A* 1h5a_A* 1h5c_A* 1h5d_A* 1h5e_A* 1h5f_A* 1h57_A* 1h5h_A* 1h5i_A* 1h5j_A* 1h5k_A* ... Back     alignment and structure
>1qgj_A Peroxidase N; oxidoreductase; HET: HEM GSH; 1.90A {Arabidopsis thaliana} SCOP: a.93.1.1 Back     alignment and structure
>1sch_A PNP, peanut peroxidase, major cationic isozyme; calcium binding, glycosylation, oxidoreductase; HET: NAG HEM; 2.56A {Arachis hypogaea} SCOP: a.93.1.1 Back     alignment and structure
>1bgp_A Barley grain peroxidase; chromoprotein, oxidoreductase; HET: HEM; 1.90A {Hordeum vulgare} SCOP: a.93.1.1 Back     alignment and structure
>1iyn_A Chloroplastic ascorbate peroxidase; hydrogen peroxide, tobacco plant, stromal ascorbate peroxidase, oxidoreductase; HET: HEM; 1.60A {Nicotiana tabacum} SCOP: a.93.1.1 Back     alignment and structure
>1llp_A LIP4.15, lignin peroxidase; heme protein, glyco protein,, oxidoreductase; HET: NAG MAN A2G HEM; 1.70A {Phanerochaete chrysosporium} SCOP: a.93.1.1 PDB: 1lga_A* 1b80_A* 1b82_A* 1b85_A* 1qpa_A* Back     alignment and structure
>2e39_A Peroxidase; heme protein, coordination geometry of heme iron, ARP, perox oxidoreductase; HET: NAG MAN HEM; 1.30A {'arthromyces ramosus'} SCOP: a.93.1.1 PDB: 1arp_A* 1arv_A* 1arw_A* 1arx_A* 1ary_A* 1c8i_A* 1ck6_A* 1gza_A* 1gzb_A* 1hsr_A* 1aru_A* 2e3a_A* 2e3b_A* 1lyk_A* 1lyc_A* 1ly9_A* 1h3j_A* 1ly8_A* Back     alignment and structure
>3q3u_A Lignin peroxidase; oxidoreductase; HET: HEM; 1.85A {Trametes cervina} SCOP: a.93.1.0 Back     alignment and structure
>3fmu_A VersatIle peroxidase VPL2; class II (fungal) peroxidases, protoporphyrin IX, electron T lignin peroxidase, lignin degradation; HET: HEM; 1.04A {Pleurotus eryngii} PDB: 3fjw_A* 2boq_A* 3fm1_A* 3fm4_A* 3fm6_A* 3fkg_A* 2w23_A* 2vka_A* 4fcn_A* 4g05_A* 4fcs_A* 4fef_A* 4fdq_A* Back     alignment and structure
>3m5q_A Manganese peroxidase 1; heme, Mn(II)-binding site, Ca(II)-binding site, glycosylation, ultrahigh resolution, calcium; HET: NAG MAN HEM; 0.93A {Phanerochaete chrysosporium} SCOP: a.93.1.1 PDB: 1mnp_A* 1yyg_A* 1yzp_A* 1yzr_A* 1yyd_A* 3m8m_A* 1mn1_A* 1mn2_A* Back     alignment and structure
>2cca_A Peroxidase/catalase T; oxidoreductase, catalase-peroxidase, KATG, heme, hydrogen peroxide, iron, metal-binding, organic radical; HET: HEM; 2.0A {Mycobacterium tuberculosis} SCOP: a.93.1.3 a.93.1.3 PDB: 1sj2_A* 2ccd_A* Back     alignment and structure
>1itk_A Catalase-peroxidase; heme protein, oxidoreductase; HET: HEM; 2.00A {Haloarcula marismortui} SCOP: a.93.1.3 a.93.1.3 Back     alignment and structure
>1ub2_A Catalase-peroxidase; KATG, cyanobacteria, oxidoreductase; HET: HEM; 2.40A {Synechococcus elongatus} SCOP: a.93.1.3 a.93.1.3 Back     alignment and structure
>3riv_A Ascorbate peroxidase; alpha helical bundle, heme peroxidase, oxidoreductase; HET: HEM; 1.76A {Leishmania major} PDB: 3riw_A* 4ged_A* Back     alignment and structure
>2vcn_A Ascorbate peroxidase; INH, APX, isoniazid, oxidoreductase; HET: HEM ISZ; 1.20A {Glycine max} PDB: 2ggn_X* 2ghd_X* 2ghe_X* 2ghc_X* 2vnx_X* 2vnz_X* 2vo2_X* 2wd4_A* 1oaf_A* 1oag_A* 1v0h_X* 2ghh_X* 2ghk_X* 2vcf_X* 2cl4_X* 2vcs_A* 2xi6_A* 2xif_A* 2xih_A* 2xj6_A* ... Back     alignment and structure
>3n3r_A Catalase-peroxidase; E198A variant, tuberclosis, isonicotini hydrazide binding, oxidoreductase; HET: TOX HEM; 1.60A {Burkholderia pseudomallei} PDB: 3n3s_A* 3n3o_A* 2fxj_A* 3n3p_A* 2fxg_A* 3n3n_A* 2fxh_A* 2dv2_A* 3n3q_A* 2dv1_A* 1x7u_A* 1mwv_A* 2b2o_A* 2b2q_A* 2b2r_A* 2b2s_A* Back     alignment and structure
>3ut2_A Catalase-peroxidase 2; KATG, fungal, heme enzyme, oxidoreducta; HET: TOX HEM; 1.55A {Magnaporthe oryzae 70-15} Back     alignment and structure
>3vli_A Catalase-peroxidase 2; oxidoreductase; HET: HEM; 1.70A {Haloarcula marismortui} PDB: 3vlh_A* 3vlj_A* 3vlk_A* 3vll_A* 3uw8_A* 3vlm_A* 1itk_A* Back     alignment and structure
>3e2o_A CCP, cytochrome C peroxidase; cytochrome C peroxidase (CCP), heme, hydrogen peroxide, iron, metal-binding, mitochondrion; HET: HEM; 1.06A {Saccharomyces cerevisiae} SCOP: a.93.1.1 PDB: 4a71_A* 1z53_A* 1kok_A* 1sbm_A* 1sdq_A* 1s73_A* 1zby_A* 1zbz_A* 2b0z_A* 2b10_A* 2b11_A* 2b12_A* 2cyp_A* 2ycg_A* 4a6z_A* 2v23_A* 1ebe_A* 3r98_A* 3r99_A* 1mkr_A* ... Back     alignment and structure
>1u2k_A Peroxidase/catalase HPI; KATG, catalase-peroxidase, C-terminal domain, oxidoreductase; 2.00A {Escherichia coli} SCOP: a.93.1.3 PDB: 1u2l_A 1u2j_A Back     alignment and structure
>1ub2_A Catalase-peroxidase; KATG, cyanobacteria, oxidoreductase; HET: HEM; 2.40A {Synechococcus elongatus} SCOP: a.93.1.3 a.93.1.3 Back     alignment and structure
>3vli_A Catalase-peroxidase 2; oxidoreductase; HET: HEM; 1.70A {Haloarcula marismortui} PDB: 3vlh_A* 3vlj_A* 3vlk_A* 3vll_A* 3uw8_A* 3vlm_A* 1itk_A* Back     alignment and structure
>1itk_A Catalase-peroxidase; heme protein, oxidoreductase; HET: HEM; 2.00A {Haloarcula marismortui} SCOP: a.93.1.3 a.93.1.3 Back     alignment and structure
>3n3r_A Catalase-peroxidase; E198A variant, tuberclosis, isonicotini hydrazide binding, oxidoreductase; HET: TOX HEM; 1.60A {Burkholderia pseudomallei} PDB: 3n3s_A* 3n3o_A* 2fxj_A* 3n3p_A* 2fxg_A* 3n3n_A* 2fxh_A* 2dv2_A* 3n3q_A* 2dv1_A* 1x7u_A* 1mwv_A* 2b2o_A* 2b2q_A* 2b2r_A* 2b2s_A* Back     alignment and structure
>3ut2_A Catalase-peroxidase 2; KATG, fungal, heme enzyme, oxidoreducta; HET: TOX HEM; 1.55A {Magnaporthe oryzae 70-15} Back     alignment and structure
>2cca_A Peroxidase/catalase T; oxidoreductase, catalase-peroxidase, KATG, heme, hydrogen peroxide, iron, metal-binding, organic radical; HET: HEM; 2.0A {Mycobacterium tuberculosis} SCOP: a.93.1.3 a.93.1.3 PDB: 1sj2_A* 2ccd_A* Back     alignment and structure
>3rrw_A Thylakoid lumenal 29 kDa protein, chloroplastic; chloroplast thylakoid lumen, plant protein; 2.50A {Arabidopsis thaliana} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 168
d1pa2a_306 a.93.1.1 (A:) Plant peroxidase {Mouse-ear cress (A 5e-29
d1fhfa_304 a.93.1.1 (A:) Plant peroxidase {Soybean (Glycine m 1e-28
d1gwua_307 a.93.1.1 (A:) Plant peroxidase {Horseradish (Armor 2e-27
d1qgja_300 a.93.1.1 (A:) Plant peroxidase {Mouse-ear cress (A 1e-24
d1bgpa_309 a.93.1.1 (A:) Plant peroxidase {Barley (Hordeum vu 5e-23
d1scha_294 a.93.1.1 (A:) Plant peroxidase {Peanut (Arachis hy 6e-23
d1yyda1357 a.93.1.1 (A:1-357) Fungal peroxidase (ligninase) { 3e-12
d1llpa_343 a.93.1.1 (A:) Fungal peroxidase (ligninase) {White 4e-09
d2e39a1336 a.93.1.1 (A:9-344) Fungal peroxidase (ligninase) { 6e-09
d2euta1291 a.93.1.1 (A:4-294) Cytochrome c peroxidase, CCP {B 5e-08
d1oafa_250 a.93.1.1 (A:) Ascorbate peroxidase {Soybean (Glyci 2e-07
d1iyna_275 a.93.1.1 (A:) Ascorbate peroxidase {Common tobacco 6e-06
>d1pa2a_ a.93.1.1 (A:) Plant peroxidase {Mouse-ear cress (Arabidopsis thaliana), peroxidase A2 [TaxId: 3702]} Length = 306 Back     information, alignment and structure

class: All alpha proteins
fold: Heme-dependent peroxidases
superfamily: Heme-dependent peroxidases
family: CCP-like
domain: Plant peroxidase
species: Mouse-ear cress (Arabidopsis thaliana), peroxidase A2 [TaxId: 3702]

 Score =  106 bits (265), Expect = 5e-29
 Identities = 43/143 (30%), Positives = 64/143 (44%), Gaps = 7/143 (4%)

Query: 27  ISTAHTIGTTACFFMTKRLYNFFPGGGSDPGINPSFVVELKATCPQNGDVNVRLPIDRGS 86
           +S AHT G   C     RL+NF   G  DP +N + +  L+  CPQNG  +    +D  +
Sbjct: 166 LSGAHTFGRARCGVFNNRLFNFSGTGNPDPTLNSTLLSTLQQLCPQNGSASTITNLDLST 225

Query: 87  ERVFDKQILQNIKDGFAVLESDSRL--NDDIITNAIIDSYLGILSPIFGPSFEADFVESI 144
              FD     N++    +L+SD  L       T AI+ S+    +      F   F +S+
Sbjct: 226 PDAFDNNYFANLQSNDGLLQSDQELFSTTGSSTIAIVTSFASNQT-----LFFQAFAQSM 280

Query: 145 VKMGHIGVKTGQQGHVRRLCAAF 167
           + MG+I   TG  G +R  C   
Sbjct: 281 INMGNISPLTGSNGEIRLDCKKV 303
>d1fhfa_ a.93.1.1 (A:) Plant peroxidase {Soybean (Glycine max) [TaxId: 3847]} Length = 304 Back     information, alignment and structure
>d1gwua_ a.93.1.1 (A:) Plant peroxidase {Horseradish (Armoracia rusticana) [TaxId: 3704]} Length = 307 Back     information, alignment and structure
>d1qgja_ a.93.1.1 (A:) Plant peroxidase {Mouse-ear cress (Arabidopsis thaliana), peroxidase N [TaxId: 3702]} Length = 300 Back     information, alignment and structure
>d1bgpa_ a.93.1.1 (A:) Plant peroxidase {Barley (Hordeum vulgare), peroxidase 1 [TaxId: 4513]} Length = 309 Back     information, alignment and structure
>d1scha_ a.93.1.1 (A:) Plant peroxidase {Peanut (Arachis hypogaea) [TaxId: 3818]} Length = 294 Back     information, alignment and structure
>d1yyda1 a.93.1.1 (A:1-357) Fungal peroxidase (ligninase) {Basidomycetos fungus (Phanerochaete chrysosporium) [TaxId: 5306]} Length = 357 Back     information, alignment and structure
>d1llpa_ a.93.1.1 (A:) Fungal peroxidase (ligninase) {White rot basidiomycete (Phanerochaete chrysosporium) [TaxId: 5306]} Length = 343 Back     information, alignment and structure
>d2e39a1 a.93.1.1 (A:9-344) Fungal peroxidase (ligninase) {Arthromyces ramosus [TaxId: 5451]} Length = 336 Back     information, alignment and structure
>d2euta1 a.93.1.1 (A:4-294) Cytochrome c peroxidase, CCP {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 291 Back     information, alignment and structure
>d1oafa_ a.93.1.1 (A:) Ascorbate peroxidase {Soybean (Glycine max) [TaxId: 3847]} Length = 250 Back     information, alignment and structure
>d1iyna_ a.93.1.1 (A:) Ascorbate peroxidase {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 275 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query168
d1fhfa_304 Plant peroxidase {Soybean (Glycine max) [TaxId: 38 100.0
d1pa2a_306 Plant peroxidase {Mouse-ear cress (Arabidopsis tha 100.0
d1qgja_300 Plant peroxidase {Mouse-ear cress (Arabidopsis tha 100.0
d1bgpa_309 Plant peroxidase {Barley (Hordeum vulgare), peroxi 100.0
d1gwua_307 Plant peroxidase {Horseradish (Armoracia rusticana 100.0
d1scha_294 Plant peroxidase {Peanut (Arachis hypogaea) [TaxId 100.0
d1iyna_275 Ascorbate peroxidase {Common tobacco (Nicotiana ta 100.0
d1yyda1357 Fungal peroxidase (ligninase) {Basidomycetos fungu 100.0
d2e39a1336 Fungal peroxidase (ligninase) {Arthromyces ramosus 99.98
d2euta1291 Cytochrome c peroxidase, CCP {Baker's yeast (Sacch 99.97
d1llpa_343 Fungal peroxidase (ligninase) {White rot basidiomy 99.97
d1oafa_250 Ascorbate peroxidase {Soybean (Glycine max) [TaxId 99.96
d1mwva2308 Catalase-peroxidase KatG {Burkholderia pseudomalle 99.76
d1ub2a2294 Catalase-peroxidase KatG {Synechococcus sp. pcc 79 99.75
d1u2ka_292 Catalase-peroxidase KatG {Burkholderia pseudomalle 99.72
d1itka2308 Catalase-peroxidase KatG {Archaeon Haloarcula mari 99.69
d1mwva1406 Catalase-peroxidase KatG {Burkholderia pseudomalle 99.68
d1itka1406 Catalase-peroxidase KatG {Archaeon Haloarcula mari 99.64
d2ccaa1410 Catalase-peroxidase KatG {Mycobacterium tuberculos 99.64
d1ub2a1406 Catalase-peroxidase KatG {Synechococcus sp. pcc 79 99.51
d2ccaa2285 Catalase-peroxidase KatG {Mycobacterium tuberculos 99.28
d1llpa_343 Fungal peroxidase (ligninase) {White rot basidiomy 81.16
>d1fhfa_ a.93.1.1 (A:) Plant peroxidase {Soybean (Glycine max) [TaxId: 3847]} Back     information, alignment and structure
class: All alpha proteins
fold: Heme-dependent peroxidases
superfamily: Heme-dependent peroxidases
family: CCP-like
domain: Plant peroxidase
species: Soybean (Glycine max) [TaxId: 3847]

Probab=100.00  E-value=5.9e-57  Score=381.43  Aligned_cols=160  Identities=29%  Similarity=0.501  Sum_probs=155.5

Q ss_pred             CCCCChHHHH-HHHHhCCCccchhhhccccccccccCccccccccccCCCCCCCCCCCHHHHHHHHhhCCCCCCCCccCc
Q 038024            3 HYLIDISELS-QVSRYNITLCKIHEISTAHTIGTTACFFMTKRLYNFFPGGGSDPGINPSFVVELKATCPQNGDVNVRLP   81 (168)
Q Consensus         3 ~~~~~~~~li-~F~~kGl~~~dlVaLsGaHTiG~ahC~~f~~Rlynf~~~~~~dp~~~~~~~~~L~~~Cp~~~~~~~~~~   81 (168)
                      .|+.++++|+ .|++|||+.+||||||||||||++||.+|..|+|+|.+++.+||++++.|+.+|++.||.++...+.++
T Consensus       140 ~p~~~~~~l~~~F~~~Gl~~~d~VaLsGaHTiG~ahc~~~~~rl~~~~~~~~~d~~~~~~~~~~L~~~c~~~~~~~~~~~  219 (304)
T d1fhfa_         140 APFFNLTQLKASFAVQGLNTLDLVTLSGGHTFGRARCSTFINRLYNFSNTGNPDPTLNTTYLEVLRARCPQNATGDNLTN  219 (304)
T ss_dssp             CTTCCHHHHHHHHHHTTCCHHHHHHHGGGGGSCEEEGGGTGGGTSCGGGSSSCCTTSCHHHHHHHHHHSCSSCSSCCEEE
T ss_pred             CCCCCHHHHHHHHHHcCCCHHHHHHHhhhhhhcccccccccccccCCCCCCCCCcccCHHHHHHHHHhcCCCCCCCcccc
Confidence            4788999999 999999999999999999999999999999999999999999999999999999999999887788899


Q ss_pred             CCCCCchhchHHHHHHhhcCcccccchhhhhcCc--chHHHHHHHhcccCCCCCc-chHHHHHHHHHHhcCCCCCCCCCC
Q 038024           82 IDRGSERVFDKQILQNIKDGFAVLESDSRLNDDI--ITNAIIDSYLGILSPIFGP-SFEADFVESIVKMGHIGVKTGQQG  158 (168)
Q Consensus        82 lD~~Tp~~FDn~Yy~~l~~~~glL~SD~~L~~d~--~T~~~V~~~a~~~~~~~~~-~F~~~Fa~amvKMg~i~vltG~~G  158 (168)
                      +|..||.+|||+||++++.++|+|+|||+|+.||  +|+++|+.||.      |+ .|+++|++||+|||+|+||||++|
T Consensus       220 ~d~~tp~~fDn~Yy~~l~~~~glL~SD~~L~~dp~~~t~~~V~~yA~------d~~~F~~~F~~Am~Km~~lgv~tg~~G  293 (304)
T d1fhfa_         220 LDLSTPDQFDNRYYSNLLQLNGLLQSDQELFSTPGADTIPIVNSFSS------NQNTFFSNFRVSMIKMGNIGVLTGDEG  293 (304)
T ss_dssp             SCSSSTTSCSTHHHHHHHTTCCSSHHHHTTTSSTTCSSHHHHHHHHH------CHHHHHHHHHHHHHHHTTTTCCCTTSS
T ss_pred             cCCCCCCccccHHHHHHhhcCcccHhhHHHHhCCCchHHHHHHHHhh------CHHHHHHHHHHHHHHHhcCCCCCCCCC
Confidence            9999999999999999999999999999999997  69999999999      99 999999999999999999999999


Q ss_pred             cccccCccCC
Q 038024          159 HVRRLCAAFS  168 (168)
Q Consensus       159 eIR~~C~~vn  168 (168)
                      |||++|++||
T Consensus       294 eiR~~C~~~N  303 (304)
T d1fhfa_         294 EIRLQCNFVN  303 (304)
T ss_dssp             BCCSBTTBCC
T ss_pred             cccCcccCcC
Confidence            9999999998
>d1pa2a_ a.93.1.1 (A:) Plant peroxidase {Mouse-ear cress (Arabidopsis thaliana), peroxidase A2 [TaxId: 3702]} Back     information, alignment and structure
>d1qgja_ a.93.1.1 (A:) Plant peroxidase {Mouse-ear cress (Arabidopsis thaliana), peroxidase N [TaxId: 3702]} Back     information, alignment and structure
>d1bgpa_ a.93.1.1 (A:) Plant peroxidase {Barley (Hordeum vulgare), peroxidase 1 [TaxId: 4513]} Back     information, alignment and structure
>d1gwua_ a.93.1.1 (A:) Plant peroxidase {Horseradish (Armoracia rusticana) [TaxId: 3704]} Back     information, alignment and structure
>d1scha_ a.93.1.1 (A:) Plant peroxidase {Peanut (Arachis hypogaea) [TaxId: 3818]} Back     information, alignment and structure
>d1iyna_ a.93.1.1 (A:) Ascorbate peroxidase {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} Back     information, alignment and structure
>d1yyda1 a.93.1.1 (A:1-357) Fungal peroxidase (ligninase) {Basidomycetos fungus (Phanerochaete chrysosporium) [TaxId: 5306]} Back     information, alignment and structure
>d2e39a1 a.93.1.1 (A:9-344) Fungal peroxidase (ligninase) {Arthromyces ramosus [TaxId: 5451]} Back     information, alignment and structure
>d2euta1 a.93.1.1 (A:4-294) Cytochrome c peroxidase, CCP {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1llpa_ a.93.1.1 (A:) Fungal peroxidase (ligninase) {White rot basidiomycete (Phanerochaete chrysosporium) [TaxId: 5306]} Back     information, alignment and structure
>d1oafa_ a.93.1.1 (A:) Ascorbate peroxidase {Soybean (Glycine max) [TaxId: 3847]} Back     information, alignment and structure
>d1mwva2 a.93.1.3 (A:441-748) Catalase-peroxidase KatG {Burkholderia pseudomallei [TaxId: 28450]} Back     information, alignment and structure
>d1ub2a2 a.93.1.3 (A:427-720) Catalase-peroxidase KatG {Synechococcus sp. pcc 7942 [TaxId: 1140]} Back     information, alignment and structure
>d1u2ka_ a.93.1.3 (A:) Catalase-peroxidase KatG {Burkholderia pseudomallei [TaxId: 28450]} Back     information, alignment and structure
>d1itka2 a.93.1.3 (A:424-731) Catalase-peroxidase KatG {Archaeon Haloarcula marismortui [TaxId: 2238]} Back     information, alignment and structure
>d1mwva1 a.93.1.3 (A:35-440) Catalase-peroxidase KatG {Burkholderia pseudomallei [TaxId: 28450]} Back     information, alignment and structure
>d1itka1 a.93.1.3 (A:18-423) Catalase-peroxidase KatG {Archaeon Haloarcula marismortui [TaxId: 2238]} Back     information, alignment and structure
>d2ccaa1 a.93.1.3 (A:26-435) Catalase-peroxidase KatG {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1ub2a1 a.93.1.3 (A:21-426) Catalase-peroxidase KatG {Synechococcus sp. pcc 7942 [TaxId: 1140]} Back     information, alignment and structure
>d2ccaa2 a.93.1.3 (A:436-720) Catalase-peroxidase KatG {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1llpa_ a.93.1.1 (A:) Fungal peroxidase (ligninase) {White rot basidiomycete (Phanerochaete chrysosporium) [TaxId: 5306]} Back     information, alignment and structure