Citrus Sinensis ID: 038068

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------27
Protein Sequence
REMAKNSAKAGKRVGDGEGPSSPKRQRKNNGHDEEEDGSCKNGSEALTITDQDIFDCPICFEPLTVPVFQCVNGHLACSDCCAKIKRNCPTCSSPTVIVRNWAIEKVIELVQVNCKNAEYGCQQKMSFSKKRGHEKTCQHSPLPCPLSDCSFLGCSSQFVRHFMAKHNISAVPFKYNSLLNVNLNVNDINIDGKFSVLQEEKNDDVLFILNNNTGSLGNLVSVCCIASVRKDLYYDIVARCVTGTTLKIQSSTWSSKVRSDIPSPFGFF
Secondary Structure (PSIPRED)
cccccccHHccccccccccccccccccccccccccccccccccccEEEcccccEEEcccccccccccEEEEccccEEccccHHHcccccccccccccccccHHHHcccccEEEEEccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHccccccccEEEccEEEEEEEcccccccccEEEEEEEEcccEEEEEEccccccEEEEEEEEEEcccccccEEEEEEEEcccEEEEEEEEEEEEEccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccHccccccccccccccccccccccccccccccccccccccccccHHHcccccccccccccEEEcccccEEEccccHHHccccccccccccHHHHHHHHHHHHHccccccccccccccEEccccccHHHHHccccccccccccccccccHHHHHHHHHHHcccccEEEEcccEEEEEEccccccccccEEEEEEEEccccEEEEEEEcccccEEEEEEEEccccHHcccEEEEEEEccccEEEccccEccccccccccccccc
Coil and Loop (DISEMBL)
remaknsakagkrvgdgegpsspkrqrknnghdeeedgsckngsealtitdqdifdcpicfepltvpvfqcvnghlacsdccakikrncptcssptvivRNWAIEKVIELVQVNCKnaeygcqqkmsfskkrghektcqhsplpcplsdcsflgcsSQFVRHFMAKhnisavpfkynSLLNVnlnvndinidgkfsvlqeeknddVLFILNNNTGSLGNLVSVCCIASVRKDLYYDIVARCVtgttlkiqsstwsskvrsdipspfgff
Flexible Loop (DISEMBL)
remaknsakagkrvgdgegpsspkrqrknnghdeeedgsckngseaLTITDQDIFDCPICFEPLTVPVFQCVNGHLACSDCCAKIKRNCPTCSSPTVIVRNWAIEKVIELVQVNCKNAEYGCQQKMSFSKKRGHEKTCQHSPLPCPLSDCSFLGCSSQFVRHFMAKHNISAVPFKYNSLLNVNLNVNDINIDGKFSVLQEEKNDDVLFILNNNTGSLGNLVSVCCIASVRKDLYYDIVARCVTGTtlkiqsstwsskvrsdipspfgff
Low Complexity Region (SEG)
REMAKNSAKAGKRVGDGEGPSSPKRQRKNNGHDEEEDGSCKNGSEALTITDQDIFDCPICFEPLTVPVFQCVNGHLACSDCCAKIKRNCPTCSSPTVIVRNWAIEKVIELVQVNCKNAEYGCQQKMSFSKKRGHEKTCQHSPLPCPLSDCSFLGCSSQFVRHFMAKHNISAVPFKYNSllnvnlnvndinidGKFSVLQEEKNDDVLFILNNNTGSLGNLVSVCCIASVRKDLYYDIVARCVTGTTLKIQSSTWSSKVRSDIPSPFGFF
Disordered region (IsUnstruct)
**********************************************LTITDQDIFDCPICFEPLTVPVFQCVNGHLACSDCCAKIKRNCPTCSSPTVIVRNWAIEKVIELVQVNCKNAEYGCQQK****************PLPCPLSDCSFLGCSSQFVRHFMAKHNISAVPFKYNSLLNVNLNVNDINIDGKFSVLQEEKNDDVLFILNNNTGSLGNLVSVCCIASVRKDLYYDIVARCVTGTTLKIQSS*****************
Disordered Region (DISOPRED)
*************************************************TDQDIFDCPICFEPLTVPVFQCVNGHLACSDCCAKIKRNCPTCSSPTVIVRNWAIEKVIELVQVNCKNAEYGCQQKMSFSKKRGHEKTCQHSPLPCPLSDCSFLGCSSQFVRHFMAKHNISAVPFKYNSLLNVNLNVNDINIDGKFSVLQEEKNDDVLFILNNNTGSLGNLVSVCCIASVRKDLYYDIVARCVT*******************P*PFGFF
Disordered Region (DISEMBL)
*****************************************NGSEALTITDQDIFDCPICFEPLTVPVFQCVNGHLACSDCCAKIKRNCPTCSSPTVIVRNWAIEKVIELVQVNCKNAEYGCQQKMS**************PLPCPLSDCSFLGCSSQFVRHFMAKHNISAVPFKYNSLLNVNLNVNDINIDGKFSVLQEEKNDDVLFILNNNTGSLGNLVSVCCIASVRKDLYYDIVARCVTGTTLK**********RSDIPSPFGFF
Disordered Region (DISPRO)
************************************************ITDQDIFDCPICFEPLTVPVFQCVNGHLACSDCCAKIKRNCPTCSSPTVIVRNWAIEKVIELVQVNCKNAEYGCQQKMSFSKKRGHEKTCQHSPLPCPLSDCSFLGCSSQFVRHFMAKHNISAVPFKYNSLLNVNLNVNDINIDGKFSVLQEEKNDDVLFILNNNTGSLGNLVSVCCIASVRKDLYYDIVARCVTGTTLKIQSSTWS**************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
REMAKNSAKAGKRVGDGEGPSSPKRQRKNNGHDEEEDGSCKNGSEALTITDQDIFDCPICFEPLTVPVFQCVNGHLACSDCCAKIKRNCPTCSSPTVIVRNWAIEKVIELVQVNCKNAEYGCQQKMSFSKKRGHEKTCQHSPLPCPLSDCSFLGCSSQFVRHFMAKHNISAVPFKYNSLLNVNLNVNDINIDGKFSVLQEEKNDDVLFILNNNTGSLGNLVSVCCIASVRKDLYYDIVARCVTGTTLKIQSSTWSSKVRSDIPSPFGFF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	269	2.2.26 [Sep-21-2011]
Q84K34	349	E3 ubiquitin-protein liga	yes	no	0.657	0.507	0.404	5e-36
Q9FKD9	281	Putative E3 ubiquitin-pro	no	no	0.825	0.790	0.317	3e-31
Q9C6H2	303	E3 ubiquitin-protein liga	no	no	0.739	0.656	0.371	3e-31
Q9C9M0	329	E3 ubiquitin-protein liga	no	no	0.676	0.553	0.372	1e-29
Q9FKD7	286	E3 ubiquitin-protein liga	no	no	0.903	0.849	0.321	5e-29
Q9C6H3	313	E3 ubiquitin-protein liga	no	no	0.758	0.651	0.344	6e-28
Q9FM14	314	E3 ubiquitin-protein liga	no	no	0.743	0.636	0.355	2e-26
Q9FKD5	276	Putative E3 ubiquitin-pro	no	no	0.505	0.492	0.383	1e-24
Q7XA77	328	E3 ubiquitin-protein liga	no	no	0.724	0.594	0.321	4e-24
Q9FKD6	263	E3 ubiquitin-protein liga	no	no	0.587	0.600	0.336	3e-22

>sp|Q84K34|SIL10_ARATH E3 ubiquitin-protein ligase SINA-like 10 OS=Arabidopsis thaliana GN=At5g37930 PE=2 SV=1

 Score =  151 bits (381), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 74/183 (40%), Positives = 110/183 (60%), Gaps = 6/183 (3%)

Query: 47  LTITDQDIFDCPICFEPLTVPVFQCVNGHLACSDCCAKIKRNCPTCSSPTVIVRNWAIEK 106
           +T+ D D+ DCPIC EPL +P+FQC NGHLAC+ CC K++  CP+C+ P   VR  A+EK
Sbjct: 103 VTLLDPDVLDCPICCEPLKIPIFQCDNGHLACTLCCTKVRNRCPSCTLPIGYVRCRAMEK 162

Query: 107 VIELVQVNCKNAEYGCQQKMSFSKKRGHEKTCQHSPLPCPLSDCSFLGCSSQFVRHFMAK 166
           VIE  +V+C NA+YGC++  S+  +  HE+ C  +P  CP+ DC + G       H  A+
Sbjct: 163 VIEASRVSCLNAKYGCKESTSYGNRFSHEQVCVFTPCSCPILDCHYTGYYKDLNNHVRAE 222

Query: 167 HNISAVPFKYNSLLNVNLNVNDINIDGKFSVLQEEKNDDVLFILNNNTGSLGNLVSVCCI 226
           H    + F +N+ L ++L++N      K ++LQEE ND  + ++          VSV CI
Sbjct: 223 HKDDLISFVWNTRLTISLDLNK-----KTTILQEE-NDGHVIVVQVFRALHAVYVSVSCI 276

Query: 227 ASV 229
           A +
Sbjct: 277 APL 279

E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates. It probably triggers the ubiquitin-mediated degradation of different substrates.
Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -

>sp|Q9FKD9|SINL6_ARATH Putative E3 ubiquitin-protein ligase SINA-like 6 OS=Arabidopsis thaliana GN=At5g37870 PE=3 SV=1

 Score =  135 bits (341), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 73/230 (31%), Positives = 120/230 (52%), Gaps = 8/230 (3%)

Query: 26  QRKNNGHDEEEDGSCK-NGSEALTITDQDIFDCPICFEPLTVPVFQCVNGHLACSDCCAK 84
           Q+++      +DG  + + + +  +TD DI DCPIC++ L +PVFQC NGHLACS CC K
Sbjct: 13  QKRHCSSISSDDGRKRVDKTRSAMLTDLDILDCPICYQALKIPVFQCGNGHLACSSCCPK 72

Query: 85  IKRNCPTCSSPTVIVRNWAIEKVIELVQVNCKNAEYGCQQKMSFSKKRGHEKTCQHSPLP 144
           ++  CP C+ P   +R  A+E+V+E V V C+ A+ GC + + + ++  HEK C  SP  
Sbjct: 73  LRNKCPACALPVGHIRCRAMERVLESVLVPCRYADLGCTKTIYYGRESTHEKICNFSPCS 132

Query: 145 CPLSDCSFLGCSSQFVRHFMAKHNISAVPFKYNSLLNVNLNVNDINIDGKFSVLQEEKND 204
           CP+  C++ G       H+   H+  +  + +N    V+     + I  K  +++     
Sbjct: 133 CPVQGCNYTGSYKDLYEHYDLTHSTGSTAYSFN---GVSYIAAMMFISDKI-LIERVYEK 188

Query: 205 DVLFILNNNTGSLGNLVSVCCIASVRKDL---YYDIVARCVTGTTLKIQS 251
            +LF++       G  VSV CIA    ++    Y ++     G T+  QS
Sbjct: 189 KLLFVVQCFEEPCGVYVSVSCIAPSAPEVGEFSYGLLYTTWEGVTMTYQS 238

E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates. It probably triggers the ubiquitin-mediated degradation of different substrates.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9C6H2|SINL3_ARATH E3 ubiquitin-protein ligase SINA-like 3 OS=Arabidopsis thaliana GN=At1g66630 PE=2 SV=1

 Score =  135 bits (340), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 78/210 (37%), Positives = 114/210 (54%), Gaps = 11/210 (5%)

Query: 23  PKRQRKNNGHDEEEDGSCKNGSE---ALTITDQDIFDCPICFEPLTVPVFQCVNGHLACS 79
           PKRQR  +    E  G   +GSE   + T+ + D+ DCPIC+  L  P++QC NGH+ACS
Sbjct: 15  PKRQRPVSM---ENVGGTASGSEVARSATLLELDLLDCPICYHKLGAPIYQCDNGHIACS 71

Query: 80  DCCAKIKRNCPTCSSPTVIVRNWAIEKVIELVQVNCKNAEYGCQQKMSF--SKKRGHEKT 137
            CC K+K  CP CS      R+  +EK++E V V+C NA+YGC +K+ +    +  HE+ 
Sbjct: 72  SCCKKVKYKCPYCSLRIGFFRSRILEKIVEAVVVSCPNAKYGCTEKIPYDNESESAHERV 131

Query: 138 CQHSPLPCPLSDCSFLGCSSQFVRHFMAKHNISAVPFKYNSLLNVNLNVNDINIDGKFSV 197
           C+ +   CP  +C + G  +   RH+ A+H      FK     N  L+V    +   F V
Sbjct: 132 CEFTLCYCPEPECKYTGVYTDLYRHYHAEHKTDHSWFKCGEYNNAWLHVTGEKLS--FLV 189

Query: 198 LQEEKNDDVLFILNNNTGSLGNLVSVCCIA 227
           LQE + D  L ++  +  S G  V+V CIA
Sbjct: 190 LQEYE-DGPLVVVQCSMESHGICVTVNCIA 218

E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates. It probably triggers the ubiquitin-mediated degradation of different substrates.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9C9M0|SINL4_ARATH E3 ubiquitin-protein ligase SINA-like 4 OS=Arabidopsis thaliana GN=At1g66650 PE=2 SV=1

 Score =  130 bits (326), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 70/188 (37%), Positives = 108/188 (57%), Gaps = 6/188 (3%)

Query: 45  EALTITDQDIFDCPICFEPLTVPVFQCVNGHLACSDCCAKIKRNCPTCSSPTVIVRNWAI 104
           +++T+ + ++ +CP CF+PL  P+FQC NGHLAC  CC K+K+ C  C  P   VR  A+
Sbjct: 74  KSVTLPNSNVLECPNCFDPLKKPIFQCNNGHLACFLCCIKLKKRCSFCKLPIGDVRCRAM 133

Query: 105 EKVIELVQVNCKNAEYGCQQKMSFSKK-RGHEKTCQHSPLPCPLSDCSFLGCSSQFVRHF 163
           EKVI+   V+C NA YGC+Q  ++  + + HEK C  +P  CP+ DC+++G     + HF
Sbjct: 134 EKVIKAGLVSCSNAIYGCKQSTTYGNQLQSHEKVCVFAPCSCPIKDCNYIGFYKDLINHF 193

Query: 164 MAKHNISAVPFKYNSLLNVNLNVNDINIDG--KFSVLQEEKNDDVLFILNNNTGSLGNLV 221
            A H +S  P   NS +     +  +++D   K  +  EEK  + LF++    GS G   
Sbjct: 194 RATHKVS--PGDINSFVFDRPVIFGLDLDSSDKMVIFVEEKQGN-LFVVQGFIGSHGVYA 250

Query: 222 SVCCIASV 229
           +V  IA +
Sbjct: 251 TVSHIAPM 258

E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates. It probably triggers the ubiquitin-mediated degradation of different substrates.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9FKD7|SINL7_ARATH E3 ubiquitin-protein ligase SINA-like 7 OS=Arabidopsis thaliana GN=At5g37890 PE=2 SV=1

 Score =  128 bits (321), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 82/255 (32%), Positives = 126/255 (49%), Gaps = 12/255 (4%)

Query: 15  GDGEGPSSPKRQRKNNGHDEEEDGSCKNGSEALTITDQDIFDCPICFEPLTVPVFQCVNG 74
           G+G G +S   Q++     +      K  S  L   D +I DCPIC+E  T+P+FQC NG
Sbjct: 11  GEGIGSNSILSQKRQLSSSDAAKRDAKKRSTMLM--DLEILDCPICYEAFTIPIFQCDNG 68

Query: 75  HLACSDCCAKIKRNCPTCSSPTVIVRNWAIEKVIELVQVNCKNAEYGCQQKMSFSKKRGH 134
           HLACS CC K+   CP C+SP    R  A+E V+E + + C NA+ GC++ +S+ K+  H
Sbjct: 69  HLACSSCCPKLNNKCPACTSPVGHNRCRAMESVLESILIPCPNAKLGCKKNVSYGKELTH 128

Query: 135 EKTCQHSPLPCPLSDCSFLGCSSQFVRHFMAKH-NISAV-PFKYNSLLNVNLNVNDINID 192
           EK C  S   CP  DC++         H+   H  I+ +  F  +  L+V +N++     
Sbjct: 129 EKECMFSHCACPALDCNYTSSYKDLYTHYRITHMEINQINTFICDIPLSVRMNIS----- 183

Query: 193 GKFSVLQEEKNDDVLFILNNNTGSLGNLVSVCCIASVRKDL--YYDIVARCVTGTTLKIQ 250
            K  +++ E   + LF +       G  V+V CIA    +L  Y   ++  V G T+  Q
Sbjct: 184 -KKILIRTEHLTNHLFAVQCFREPYGVYVTVSCIAPSSPELSQYSYALSYTVDGHTVIYQ 242

Query: 251 SSTWSSKVRSDIPSP 265
           S      ++    +P
Sbjct: 243 SPEVKRVLKLSFQTP 257

E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates. It probably triggers the ubiquitin-mediated degradation of different substrates.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9C6H3|SINL2_ARATH E3 ubiquitin-protein ligase SINA-like 2 OS=Arabidopsis thaliana GN=At1g66620 PE=2 SV=1

 Score =  124 bits (312), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 73/212 (34%), Positives = 110/212 (51%), Gaps = 8/212 (3%)

Query: 17  GEGPSSP-KRQRKNNGHDEEEDGSCKNGSEALTITDQDIFDCPICFEPLTVPVFQCVNGH 75
           GE  +S  KRQR  +  +  E+G     + + T+ + D+ DCPIC   LT P+FQC NGH
Sbjct: 3   GEASTSRRKRQRVPSSVESVENGGGDAVARSGTLFELDLLDCPICCHALTSPIFQCDNGH 62

Query: 76  LACSDCCAKIKRNCPTCSSPTVIVRNWAIEKVIELVQVNCKNAEYGCQQKMSFSKKRGHE 135
           +ACS CC K++  CP+C+ P    R+  +E+V+E V V C N ++GC +K S+ K+  HE
Sbjct: 63  IACSSCCTKLRNKCPSCALPIGNFRSRIMERVVEAVMVTCPNVKHGCTEKFSYGKELIHE 122

Query: 136 KTCQHSPLPCPLSDCSFLGCSSQFVRHFMAKHNISAVPFKYNSLLNVNLNVNDINIDGKF 195
           K C+ +   CP  +C++ G       HF   H  +     +N +   N     + I  K 
Sbjct: 123 KDCRFALCYCPAPNCNYSGVYKDLYSHFYVNHYDT-----WNQIGCGNFAGAWLRISEKI 177

Query: 196 SVLQEEKNDDVLFILNNNTGSLGNLVSVCCIA 227
            VLQ  +    L  +     + G  V+V CIA
Sbjct: 178 LVLQYGQGP--LIAVQCFKETQGMYVTVNCIA 207

E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates. It probably triggers the ubiquitin-mediated degradation of different substrates.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9FM14|SIL11_ARATH E3 ubiquitin-protein ligase SINA-like 11 OS=Arabidopsis thaliana GN=At5g62800 PE=2 SV=2

 Score =  119 bits (299), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 76/214 (35%), Positives = 118/214 (55%), Gaps = 14/214 (6%)

Query: 21  SSPKRQ--RKNNGHDEEEDGSCKNGSEALTITDQDIFDCPICFEPLTVPVFQCVNGHLAC 78
           S P+ Q  ++ + H +++    +N + +  + D D+ DCP+CFEPLT+P FQC +GH+ C
Sbjct: 6   SHPQNQTSKRKSSHPQKKQ-RMENETRSAKLLDLDVLDCPVCFEPLTIPTFQCDDGHIVC 64

Query: 79  SDCCAKIKRNC--PTCSSPTVIVRNWAIEKVIELVQVNCKNAEYGCQQKMSFSKKRGHEK 136
           + C AK+   C  P C  P    R +A+E+V+E   V C+N E+GC + +S+ K   HEK
Sbjct: 65  NFCFAKVSNKCPGPGCDLPIGNKRCFAMERVLESAFVPCQNTEFGCTKSVSYEKVSSHEK 124

Query: 137 TCQHSPLPCPLSDCSFLGCSSQFVRHFMAKH--NISAVPFKYN-SLLNVNLNVNDINIDG 193
            C +S   CP  +C++ G  +    HFM +H  N + V  K+  S ++V      INI  
Sbjct: 125 ECNYSQCSCPNLECNYTGSYNIIYGHFMRRHLYNSTIVSSKWGYSTVDV-----LINIKE 179

Query: 194 KFSVLQEEKNDDVLFILNNNTGSLGNLVSVCCIA 227
           K SVL E +   +LF++       G  V+V  IA
Sbjct: 180 KVSVLWESR-QKLLFVVQCFKERHGVYVTVRRIA 212

E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates. It probably triggers the ubiquitin-mediated degradation of different substrates.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9FKD5|SINL9_ARATH Putative E3 ubiquitin-protein ligase SINA-like 9 OS=Arabidopsis thaliana GN=At5g37910 PE=3 SV=1

 Score =  113 bits (283), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 59/154 (38%), Positives = 76/154 (49%), Gaps = 18/154 (11%)

Query: 15  GDGEGPSSPKRQRKNNGHDEEEDGSCKNGSEALTITDQDIFDCPICFEPLTVPVFQCVNG 74
           GDG G    KRQR                  A+ + D DI DCPIC E LT P+FQC NG
Sbjct: 14  GDG-GERVAKRQRS-----------------AIVLLDLDILDCPICCEALTSPIFQCDNG 55

Query: 75  HLACSDCCAKIKRNCPTCSSPTVIVRNWAIEKVIELVQVNCKNAEYGCQQKMSFSKKRGH 134
           HLAC  CC K+   CP C+ P    R+ A+E V+E + + C N  +GC +   + K+  H
Sbjct: 56  HLACGSCCPKLSNKCPACTLPVGHSRSRAMESVLESILIPCPNVRFGCTKSFFYGKESAH 115

Query: 135 EKTCQHSPLPCPLSDCSFLGCSSQFVRHFMAKHN 168
           EK C  S   CP S C + G       H+   H+
Sbjct: 116 EKECIFSQCSCPSSVCDYTGSYKDLYAHYKLTHS 149

E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates. It probably triggers the ubiquitin-mediated degradation of different substrates.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q7XA77|SINL5_ARATH E3 ubiquitin-protein ligase SINA-like 5 OS=Arabidopsis thaliana GN=At1g66660 PE=2 SV=2

 Score =  112 bits (279), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 63/196 (32%), Positives = 107/196 (54%), Gaps = 1/196 (0%)

Query: 34  EEEDGSCKNGSEALTITDQDIFDCPICFEPLTVPVFQCVNGHLACSDCCAKIKRNCPTCS 93
           +E+ GS K+ S+ + +   D+ DCP C EPL  P++QC NGHLACS CC K+ + C  C 
Sbjct: 64  DEQSGSPKS-SQPVKLQSSDVLDCPTCCEPLKRPIYQCSNGHLACSSCCQKLNKKCSFCR 122

Query: 94  SPTVIVRNWAIEKVIELVQVNCKNAEYGCQQKMSFSKKRGHEKTCQHSPLPCPLSDCSFL 153
                +R  A+EKVIE   V C NA++GC++  ++  +  HEK C+     CP+S+C+++
Sbjct: 123 CNIGDIRCRAMEKVIEASIVPCPNAKHGCKETTTYCNQSSHEKVCKFVRCSCPVSNCNYV 182

Query: 154 GCSSQFVRHFMAKHNISAVPFKYNSLLNVNLNVNDINIDGKFSVLQEEKNDDVLFILNNN 213
              S    H  +  ++      +  L+     + ++N+  K +V+ +E+ +  L ++   
Sbjct: 183 SSYSNLKSHACSTAHVWGEDDIHFQLVIDRPRIFNMNLGRKKTVVFKEEKEGDLIVVQAF 242

Query: 214 TGSLGNLVSVCCIASV 229
            G  G  V+V  IA +
Sbjct: 243 KGLEGVYVTVNRIAHM 258

E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates. It probably triggers the ubiquitin-mediated degradation of different substrates.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9FKD6|SINL8_ARATH E3 ubiquitin-protein ligase SINA-like 8 OS=Arabidopsis thaliana GN=At5g37900 PE=1 SV=2

 Score =  105 bits (262), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 64/190 (33%), Positives = 90/190 (47%), Gaps = 32/190 (16%)

Query: 48  TITDQDIFDCPICFEPLTVPVFQCVNGHLACSDCCAKIKRNCPTCSSPTVIVRNWAIEKV 107
           T+ D DI DCPIC E LT P+FQC NGHLACS CC K++  CP C           +E +
Sbjct: 26  TLLDLDILDCPICCEGLTCPIFQCENGHLACSSCCPKLRNKCPAC----------PMENI 75

Query: 108 IELVQVNCKNAEYGCQQKMSFSKKRGHEKTCQHSPLPCPLSDCSFLGCSSQFVRHFMAKH 167
           +E + V C N  +GC +   + KK  HE+ C  S   CP  DC + G       H+   H
Sbjct: 76  LESILVTCPNDMFGCTESFLYGKKSTHEEECIFSLCSCPSLDCEYSGRYEDLYDHYKLTH 135

Query: 168 NI----------SAVPFKYNSLLNVNLNVNDINIDGKFSVLQEEKNDDVLFILNNNTGSL 217
                       S++P+K   L++  + +  +          E+K   +LF +     S 
Sbjct: 136 ISNSYWTTNCFRSSIPYKAPMLISDKIQITRV---------YEKK---ILFAVQCFRESC 183

Query: 218 GNLVSVCCIA 227
           G  V+V CIA
Sbjct: 184 GVYVTVSCIA 193

E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates. It probably triggers the ubiquitin-mediated degradation of different substrates.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	269
255583779	374	ubiquitin-protein ligase, putative [Rici	0.814	0.585	0.449	1e-47
224135291	372	predicted protein [Populus trichocarpa]	0.836	0.604	0.423	4e-47
388496832	281	unknown [Lotus japonicus]	0.907	0.868	0.401	4e-43
225453102	355	PREDICTED: E3 ubiquitin-protein ligase S	0.832	0.630	0.404	8e-42
147816090	355	hypothetical protein VITISV_037121 [Viti	0.832	0.630	0.404	2e-41
255647862	320	unknown [Glycine max]	0.843	0.709	0.389	4e-41
356524904	320	PREDICTED: E3 ubiquitin-protein ligase S	0.843	0.709	0.389	4e-41
356512131	320	PREDICTED: E3 ubiquitin-protein ligase S	0.773	0.65	0.416	3e-40
358348167	327	E3 ubiquitin-protein ligase SINA-like pr	0.743	0.611	0.399	1e-38
357503141	317	Ubiquitin [Medicago truncatula] gi|35549	0.706	0.599	0.439	4e-37

>gi|255583779|ref|XP_002532642.1| ubiquitin-protein ligase, putative [Ricinus communis] gi|223527633|gb|EEF29745.1| ubiquitin-protein ligase, putative [Ricinus communis]

 Score =  196 bits (497), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 103/229 (44%), Positives = 146/229 (63%), Gaps = 10/229 (4%)

Query: 38  GSCKNGSEALTITDQDIFDCPICFEPLTVPVFQCVNGHLACSDCCAKIKRNCPTCSSPTV 97
           G+ +N +  +T+TD ++ DCPIC+E L++PVFQC NGH ACS CC K+   CP+CS P  
Sbjct: 103 GTARNAAICVTLTDPEVLDCPICYECLSIPVFQCENGHTACSSCCRKLAHKCPSCSLPIG 162

Query: 98  IVRNWAIEKVIELVQVNCKNAEYGCQQKMSFSKKRGHEKTCQHSPLPCPLSDCSFLGCSS 157
             R  AIEKV+E V++ C N +YGC++ +S+SKK  H+K C ++P  CPLS CSF+G S 
Sbjct: 163 YNRCRAIEKVLESVKLPCHNLKYGCKEMVSYSKKLDHDKICNNAPCSCPLSGCSFVGSSR 222

Query: 158 QFVRHFMAKHNISAVPFKYNSLLNVNLNVNDINIDGKFSVLQEEKNDDVLFILNNNTGSL 217
           Q  +HF  KH  SA PF+YN    V   +ND ++     +LQEEK + V+F L N    L
Sbjct: 223 QLYQHFSIKHKGSAAPFRYNITFPVFFTLNDKSL-----ILQEEK-EGVVFFLKNTAEIL 276

Query: 218 GNLVSVCCIA--SVRKDLYYDIVARCVTGTTLKIQSSTWS-SKVRSDIP 263
           GN+++V C+   S +   +Y++ AR + G+ LK QS T +  KV  D P
Sbjct: 277 GNVITVNCLGGPSSKGGYFYELAAR-MEGSNLKFQSFTKNIQKVNHDDP 324

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224135291|ref|XP_002327611.1| predicted protein [Populus trichocarpa] gi|222836165|gb|EEE74586.1| predicted protein [Populus trichocarpa]

 Score =  194 bits (493), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 99/234 (42%), Positives = 147/234 (62%), Gaps = 9/234 (3%)

Query: 38  GSCKNGSEALTITDQDIFDCPICFEPLTVPVFQCVNGHLACSDCCAKIKRNCPTCSSPTV 97
           G  +NG    T++D ++ DCPIC EPLT+PVFQC NGH ACS CC K++  CP+C+ P  
Sbjct: 107 GPSRNGVIYATLSDPEVLDCPICCEPLTIPVFQCDNGHTACSSCCIKLQHKCPSCTMPIG 166

Query: 98  IVRNWAIEKVIELVQVNCKNAEYGCQQKMSFSKKRGHEKTCQHSPLPCPLSDCSFLGCSS 157
             R  AIEKV+E ++V+C N+ YGC++ + +SKK  H+K+C H+P  CPL  C++ G S 
Sbjct: 167 YNRCRAIEKVLESLKVSCSNSSYGCKESICYSKKYEHDKSCTHAPCTCPLPACNYQGSSK 226

Query: 158 QFVRHFMAKHNISAVPFKYNSLLNVNLNVNDINIDGKFSVLQEEKNDDVLFILNNNTGSL 217
           +  +H   KH      F++N+   +   V     D KF VLQEEK +DVLFIL N +  L
Sbjct: 227 RLYQHCRIKHLCDLTSFQFNTSFPLFFMV-----DHKFRVLQEEK-EDVLFILTNRSECL 280

Query: 218 GNLVSVCCI--ASVRKDLYYDIVARCVTGTTLKIQSSTWSSKVRSDIPSPFGFF 269
           GN+++V C+  +S ++  +Y++ A+   G+ ++ QSST + + R D P   GF 
Sbjct: 281 GNVITVSCMGPSSSKQGYFYELTAK-AEGSNVRFQSSTRNIQTRVDHPPSLGFL 333

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388496832|gb|AFK36482.1| unknown [Lotus japonicus]

 Score =  181 bits (458), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 108/269 (40%), Positives = 150/269 (55%), Gaps = 25/269 (9%)

Query: 16  DGEGPSSPKRQRKNNGHDEEEDGSCKNGSEA---------LTITDQDIFDCPICFEPLTV 66
           D E  ++ +    N+G+ E ED +  +G  A         + ITD D+ DC IC+EPL+V
Sbjct: 4   DPEIATTQEVDHNNDGNGEAEDSNGVSGYSAARERERSVPVIITDPDVLDCCICYEPLSV 63

Query: 67  PVFQCVNGHLACSDCCAKIKRNCPTCSSPTVIVRNWAIEKVIELVQVNCKNAEYGCQQKM 126
           PVFQC NGH+ACS CCA+++  CP C  P    R  A+EK++E ++++C NA+YGC++  
Sbjct: 64  PVFQCENGHVACSSCCARLRNKCPMCLMPIGYNRCRAMEKLLESIKISCLNAKYGCKEVF 123

Query: 127 SFSKKRGHEKTCQHSPLPCPLSDCSFLGCSSQFVRHFMAKHNISAVPFKYNSLLNVNLNV 186
           S+S K  H K C + P+ CP +DC F+  S +   H   +H  S V F Y+  + V LN 
Sbjct: 124 SYSMKSDHAKECVYIPILCPHTDCDFVASSKELSLHVSHRHVGSGVQFTYDKFITVFLNT 183

Query: 187 NDINIDGKFSVLQEEKNDDVLFILNNNTGSLGNLVSVCCIA-SVRKDLYYDIVARCVTGT 245
                D K  VLQE+ ND  LFI++N    LGN V + CI        +YDI+AR   G+
Sbjct: 184 -----DQKEIVLQEQ-NDAHLFIVHNKLELLGNTVHISCIGPKSMAGFHYDILARS-RGS 236

Query: 246 TLKIQSST--------WSSKVRSDIPSPF 266
           TL +QS T         SS V   IPS F
Sbjct: 237 TLILQSVTKIIQAIGHASSSVFLLIPSKF 265

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225453102|ref|XP_002271757.1| PREDICTED: E3 ubiquitin-protein ligase SINA-like 10 [Vitis vinifera]

 Score =  176 bits (447), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 93/230 (40%), Positives = 139/230 (60%), Gaps = 6/230 (2%)

Query: 41  KNGSEALTITDQDIFDCPICFEPLTVPVFQCVNGHLACSDCCAKIKRNCPTCSSPTVIVR 100
           ++ S ++ +TD ++ DC IC EPL+VPVFQC NGH+ACS CC K+   CP+CS P    R
Sbjct: 98  RDASVSVILTDPEVLDCSICLEPLSVPVFQCENGHIACSSCCTKLSNRCPSCSWPIGYNR 157

Query: 101 NWAIEKVIELVQVNCKNAEYGCQQKMSFSKKRGHEKTCQHSPLPCPLSDCSFLGCSSQFV 160
             AIEKV+E V+V+C+N  YGC++ +S+ KK  HE TC + P  CP S+C+F G S Q  
Sbjct: 158 CRAIEKVLESVKVSCQNTAYGCKETVSYGKKHDHEVTCNYVPCSCPHSNCNFRGSSKQLA 217

Query: 161 RHFMAKHNISAVPFKYNSLLNVNLNVNDINIDGKFSVLQEEKNDDVLFILNNNTGSLGNL 220
           +HF +KH  S + F+YNS   V+L  N ++   KF +L  E  +  LFI++++   LG+ 
Sbjct: 218 QHFRSKHLNSVIRFQYNSFFPVHLEFNAVD---KFCIL--EAKEGALFIVSSSIQQLGHA 272

Query: 221 VSVCCIASVRKDLYYDIVARCVTGTTLKIQSSTWSSKVRSDIPS-PFGFF 269
           V+VC I       +   +A      ++ +QS T + +   ++PS   GF 
Sbjct: 273 VTVCRIGPRSSRGHAFNLAAWKGDRSIMLQSFTENIREVVELPSLSMGFL 322

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147816090|emb|CAN77431.1| hypothetical protein VITISV_037121 [Vitis vinifera]

 Score =  175 bits (443), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 93/230 (40%), Positives = 138/230 (60%), Gaps = 6/230 (2%)

Query: 41  KNGSEALTITDQDIFDCPICFEPLTVPVFQCVNGHLACSDCCAKIKRNCPTCSSPTVIVR 100
           ++ S ++ +TD ++ DC IC EPL+VPVFQC NGH+ACS CC K+   CP+CS P    R
Sbjct: 98  RDASVSVILTDPEVLDCSICLEPLSVPVFQCENGHIACSSCCTKLSNRCPSCSWPIGYNR 157

Query: 101 NWAIEKVIELVQVNCKNAEYGCQQKMSFSKKRGHEKTCQHSPLPCPLSDCSFLGCSSQFV 160
             AIEKV+E V+V+C+N  YGC++ +S+ KK  HE TC + P  CP S+C+F G S Q  
Sbjct: 158 CRAIEKVLESVKVSCQNTAYGCKETVSYXKKXDHEVTCNYVPCSCPHSNCNFRGSSKQLA 217

Query: 161 RHFMAKHNISAVPFKYNSLLNVNLNVNDINIDGKFSVLQEEKNDDVLFILNNNTGSLGNL 220
           +HF +KH  S + F+YNS   V+L  N ++   KF +L  E  +  LFI++++   LG+ 
Sbjct: 218 QHFRSKHLNSVIRFQYNSFFPVHLEFNAVD---KFCIL--EAKEGALFIVSSSIQQLGHA 272

Query: 221 VSVCCIASVRKDLYYDIVARCVTGTTLKIQSSTWSSKVRSDIPS-PFGFF 269
           V+VC I       +   +A      ++ +QS T + +    +PS   GF 
Sbjct: 273 VTVCRIGPRSSRGHAFNLAAWKGDRSIMLQSFTENIREVVXLPSLSMGFL 322

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255647862|gb|ACU24390.1| unknown [Glycine max]

 Score =  174 bits (441), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 93/239 (38%), Positives = 136/239 (56%), Gaps = 12/239 (5%)

Query: 16  DGEGPSSPKRQRKNNGHDEEEDGSCKNGSEALTITDQDIFDCPICFEPLTVPVFQCVNGH 75
           D   PS+       NG       S ++ S  + ++D D+ DC IC+EPLT PVFQC NGH
Sbjct: 55  DHAAPSNDGSNSNGNG----AGTSTRDRSVPIFVSDPDVLDCCICYEPLTSPVFQCENGH 110

Query: 76  LACSDCCAKIKRNCPTCSSPTVIVRNWAIEKVIELVQVNCKNAEYGCQQKMSFSKKRGHE 135
           +ACS CC ++   CP CS P    R  AIEKV+E ++++C NA YGC++ +S+SKK  HE
Sbjct: 111 IACSICCVRLSNKCPMCSMPIGYNRCRAIEKVLECIKMSCPNANYGCKETLSYSKKNEHE 170

Query: 136 KTCQHSPLPCPLSDCSFLGCSSQFVRHFMAKHNISAVPFKYNSLLNVNLNVNDINIDGKF 195
           K C + P  CP + C F+  S +   HF  +H  S   F Y+    V L++N      + 
Sbjct: 171 KECIYLPCSCPFTGCDFIASSKELFLHFSHRHVGSGTQFTYDKFFTVFLSIN------QR 224

Query: 196 SVLQEEKNDDVLFILNNNTGSLGNLVSVCCIA-SVRKDLYYDIVARCVTGTTLKIQSST 253
           +V+ +EK+D  LF+++NN   LGN+V + CI      +  Y+++AR   G  L +QS T
Sbjct: 225 TVVLKEKSDGNLFVVHNNLEHLGNIVRISCIGPKSTTEFQYEVLAR-HQGNALILQSFT 282

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356524904|ref|XP_003531068.1| PREDICTED: E3 ubiquitin-protein ligase SINA-like 10-like [Glycine max]

 Score =  174 bits (440), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 93/239 (38%), Positives = 136/239 (56%), Gaps = 12/239 (5%)

Query: 16  DGEGPSSPKRQRKNNGHDEEEDGSCKNGSEALTITDQDIFDCPICFEPLTVPVFQCVNGH 75
           D   PS+       NG       S ++ S  + ++D D+ DC IC+EPLT PVFQC NGH
Sbjct: 55  DHAAPSNDGSNSNGNG----AGTSTRDRSVPIFVSDPDVLDCCICYEPLTSPVFQCENGH 110

Query: 76  LACSDCCAKIKRNCPTCSSPTVIVRNWAIEKVIELVQVNCKNAEYGCQQKMSFSKKRGHE 135
           +ACS CC ++   CP CS P    R  AIEKV+E ++++C NA YGC++ +S+SKK  HE
Sbjct: 111 IACSICCVRLSNKCPMCSMPIGYNRCRAIEKVLECIKMSCPNANYGCKETLSYSKKNEHE 170

Query: 136 KTCQHSPLPCPLSDCSFLGCSSQFVRHFMAKHNISAVPFKYNSLLNVNLNVNDINIDGKF 195
           K C + P  CP + C F+  S +   HF  +H  S   F Y+    V L++N      + 
Sbjct: 171 KECIYLPCSCPFTGCDFIASSKELFLHFSHRHVGSGTQFTYDKFFTVFLSIN------QR 224

Query: 196 SVLQEEKNDDVLFILNNNTGSLGNLVSVCCIA-SVRKDLYYDIVARCVTGTTLKIQSST 253
           +V+ +EK+D  LF+++NN   LGN+V + CI      +  Y+++AR   G  L +QS T
Sbjct: 225 TVVLKEKSDGNLFVVHNNLEHLGNIVRISCIGPKSTTEFQYEVLAR-HQGNALILQSFT 282

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356512131|ref|XP_003524774.1| PREDICTED: E3 ubiquitin-protein ligase SINA-like 10-like [Glycine max]

 Score =  171 bits (432), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 90/216 (41%), Positives = 126/216 (58%), Gaps = 8/216 (3%)

Query: 39  SCKNGSEALTITDQDIFDCPICFEPLTVPVFQCVNGHLACSDCCAKIKRNCPTCSSPTVI 98
           S ++ S  + ++D D+ DC IC+EPL  PVFQC NGH+ACS CC ++   CP C  P   
Sbjct: 74  SSRDRSVPIFVSDPDVLDCCICYEPLAAPVFQCENGHIACSTCCVRLSNKCPMCLMPIGY 133

Query: 99  VRNWAIEKVIELVQVNCKNAEYGCQQKMSFSKKRGHEKTCQHSPLPCPLSDCSFLGCSSQ 158
            R  AIEKV+E ++++C NA YGC++  S+S+K  HEK C + P  CPL+ C F+  S +
Sbjct: 134 NRCRAIEKVLECIKMSCPNANYGCKETFSYSRKNNHEKECIYLPCSCPLTGCDFVASSKE 193

Query: 159 FVRHFMAKHNISAVPFKYNSLLNVNLNVNDINIDGKFSVLQEEKNDDVLFILNNNTGSLG 218
              HF  +H      F Y+    V L++N   I     VLQ EKND  LFI++NN   LG
Sbjct: 194 LFLHFSHRHVGMGTRFAYDKFFTVFLSINQRTI-----VLQ-EKNDGNLFIVHNNHEHLG 247

Query: 219 NLVSVCCIA-SVRKDLYYDIVARCVTGTTLKIQSST 253
           N+V + CI      +  Y+++AR   G  L +QS T
Sbjct: 248 NIVRISCIGPKSMAEFQYEVLAR-HQGNALILQSFT 282

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358348167|ref|XP_003638120.1| E3 ubiquitin-protein ligase SINA-like protein [Medicago truncatula] gi|355504055|gb|AES85258.1| E3 ubiquitin-protein ligase SINA-like protein [Medicago truncatula]

 Score =  166 bits (420), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 83/208 (39%), Positives = 124/208 (59%), Gaps = 8/208 (3%)

Query: 49  ITDQDIFDCPICFEPLTVPVFQCVNGHLACSDCCAKIKRNCPTCSSPTVIVRNWAIEKVI 108
           I+D D+ DC IC EPL VP++QC NGH+ACS CC +++  CP CS P    R  A+EK++
Sbjct: 92  ISDPDVLDCFICSEPLAVPIYQCENGHIACSKCCGELRNKCPMCSMPIGYNRCRAVEKLL 151

Query: 109 ELVQVNCKNAEYGCQQKMSFSKKRGHEKTCQHSPLPCPLSDCSFLGCSSQFVRHFMAKHN 168
           E ++++C NA+YGC+   S S K  HEK C + P  CP + C FL  S +   HF  +H 
Sbjct: 152 ESIKISCPNAKYGCKDMFSCSMKSSHEKECIYIPCKCPHTGCGFLASSKELALHFSHRHA 211

Query: 169 ISAVPFKYNSLLNVNLNVNDINIDGKFSVLQEEKNDDVLFILNNNTGSLGNLVSVCCIA- 227
              + F Y+  ++V+LN     I      +  ++ND  LFI++N+    GN+V + C+  
Sbjct: 212 GFGIQFTYDKFISVSLNTRQKQI------VLLDQNDARLFIVHNHIVQHGNMVHISCMGP 265

Query: 228 SVRKDLYYDIVARCVTGTTLKIQSSTWS 255
               D +YD++AR   G+TL +QSST +
Sbjct: 266 KAITDTHYDVLARS-QGSTLILQSSTKT 292

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357503141|ref|XP_003621859.1| Ubiquitin [Medicago truncatula] gi|355496874|gb|AES78077.1| Ubiquitin [Medicago truncatula]

 Score =  160 bits (406), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 87/198 (43%), Positives = 120/198 (60%), Gaps = 8/198 (4%)

Query: 45  EALTITDQDIFDCPICFEPLTVPVFQCVNGHLACSDCCAKIKRNCPTCSSPTVIVRNWAI 104
           E LTI++  + DC  CF+PL++PVFQC NGH+ CS CC K++  C  CS      R  AI
Sbjct: 2   EPLTISNSKLLDCCNCFQPLSIPVFQCDNGHIVCSTCCPKLRNKCHKCSLHISSKRCIAI 61

Query: 105 EKVIELVQVNCKNAEYGCQQKMSFSKKRGHEKTCQHSPLPCPLSDCSFLGCSSQFVRHFM 164
           E +++ ++++C NA++GC++K+S++  R HE+ C + P  CPLS C F+  S     HF 
Sbjct: 62  ENLLQSIEMSCLNAKHGCKEKISYTGNRKHEEECIYVPCYCPLSGCDFVASSEVLSNHFS 121

Query: 165 AKHNISAVPFKYNSLLNVNLNVNDINIDGKFSVLQEEKNDDVLFILNNNTGSLGNLVSVC 224
            KH  S + F Y     V+L  N     G+  VLQEE ND  LFILNNNT SLG  V++C
Sbjct: 122 HKHGDSQIEFSYGHSFIVSLMSN-----GETIVLQEE-NDGKLFILNNNTMSLGKAVNIC 175

Query: 225 CIA--SVRKDLYYDIVAR 240
           CI   S   +  YDI A+
Sbjct: 176 CIGPNSSGSEYSYDISAK 193

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	269
TAIR|locus:2153784	349	AT5G37930 [Arabidopsis thalian	0.814	0.627	0.346	1.2e-35
TAIR|locus:2153804	281	AT5G37870 [Arabidopsis thalian	0.825	0.790	0.313	6e-32
TAIR|locus:2033369	329	AT1G66650 [Arabidopsis thalian	0.810	0.662	0.339	2e-31
TAIR|locus:2195180	303	AT1G66630 [Arabidopsis thalian	0.739	0.656	0.357	2.6e-31
TAIR|locus:2153754	286	AT5G37890 [Arabidopsis thalian	0.855	0.804	0.325	6.2e-30
TAIR|locus:2195175	313	AT1G66620 [Arabidopsis thalian	0.561	0.482	0.388	7.9e-30
TAIR|locus:2033354	348	AT1G66660 [Arabidopsis thalian	0.773	0.597	0.312	8.6e-30
TAIR|locus:2153774	276	AT5G37910 [Arabidopsis thalian	0.475	0.463	0.406	2.2e-27
UNIPROTKB|P29304	314	sina "E3 ubiquitin-protein lig	0.609	0.522	0.315	2.3e-23
UNIPROTKB|Q8I147	331	sina "E3 ubiquitin-protein lig	0.557	0.453	0.337	3.8e-23

TAIR|locus:2153784 AT5G37930 [Arabidopsis thaliana (taxid:3702)]

 Score = 385 (140.6 bits), Expect = 1.2e-35, P = 1.2e-35
 Identities = 78/225 (34%), Positives = 116/225 (51%)

Query:     3 MAKNSAKAGKRVGDGEGPSSPKRQRKNNGHDEEEDGSCKNGSEALTITDQDIFDCPICFE 62
             M   S   G    D +     + +R     + +   S K+   ++T+ D D+ DCPIC E
Sbjct:    59 MRPESEDRGSTSDDSDREVVIEERRFGKFVNSQSSSSSKDSPLSVTLLDPDVLDCPICCE 118

Query:    63 PLTVPVFQCVNGHLACSDCCAKIKRNCPTCSSPTVIVRNWAIEKVIELVQVNCKNAEYGC 122
             PL +P+FQC NGHLAC+ CC K++  CP+C+ P   VR  A+EKVIE  +V+C NA+YGC
Sbjct:   119 PLKIPIFQCDNGHLACTLCCTKVRNRCPSCTLPIGYVRCRAMEKVIEASRVSCLNAKYGC 178

Query:   123 QQKMSFSKKRGHEKTCQHSPLPCPLSDCSFLGCSSQFVRHFMAKHNISAVPFKYNSXXXX 182
             ++  S+  +  HE+ C  +P  CP+ DC + G       H  A+H    + F +N+    
Sbjct:   179 KESTSYGNRFSHEQVCVFTPCSCPILDCHYTGYYKDLNNHVRAEHKDDLISFVWNTRLTI 238

Query:   183 XXXXXXXXXXGKFSVLQEEKNDDVLFILNNNTGSLGNLVSVCCIA 227
                        K ++LQEE ND  + ++          VSV CIA
Sbjct:   239 SLDLNK-----KTTILQEE-NDGHVIVVQVFRALHAVYVSVSCIA 277

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA;ISS

GO:0007275 "multicellular organismal development" evidence=IEA;ISS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA

TAIR|locus:2153804 AT5G37870 [Arabidopsis thaliana (taxid:3702)]

 Score = 350 (128.3 bits), Expect = 6.0e-32, P = 6.0e-32
 Identities = 72/230 (31%), Positives = 116/230 (50%)

Query:    26 QRKNNGHDEEEDGSCK-NGSEALTITDQDIFDCPICFEPLTVPVFQCVNGHLACSDCCAK 84
             Q+++      +DG  + + + +  +TD DI DCPIC++ L +PVFQC NGHLACS CC K
Sbjct:    13 QKRHCSSISSDDGRKRVDKTRSAMLTDLDILDCPICYQALKIPVFQCGNGHLACSSCCPK 72

Query:    85 IKRNCPTCSSPTVIVRNWAIEKVIELVQVNCKNAEYGCQQKMSFSKKRGHEKTCQHSPLP 144
             ++  CP C+ P   +R  A+E+V+E V V C+ A+ GC + + + ++  HEK C  SP  
Sbjct:    73 LRNKCPACALPVGHIRCRAMERVLESVLVPCRYADLGCTKTIYYGRESTHEKICNFSPCS 132

Query:   145 CPLSDCSFLGCSSQFVRHFMAKHNISAVPFKYNSXXXXXXXXXXXXXXGKFSVLQEEKND 204
             CP+  C++ G       H+   H+  +  + +N                    + E+K  
Sbjct:   133 CPVQGCNYTGSYKDLYEHYDLTHSTGSTAYSFNGVSYIAAMMFISDKI-LIERVYEKK-- 189

Query:   205 DVLFILNNNTGSLGNLVSVCCIASVRKDL---YYDIVARCVTGTTLKIQS 251
              +LF++       G  VSV CIA    ++    Y ++     G T+  QS
Sbjct:   190 -LLFVVQCFEEPCGVYVSVSCIAPSAPEVGEFSYGLLYTTWEGVTMTYQS 238

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IEA;ISS

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA;ISS

GO:0007275 "multicellular organismal development" evidence=IEA;ISS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA

TAIR|locus:2033369 AT1G66650 [Arabidopsis thaliana (taxid:3702)]

 Score = 345 (126.5 bits), Expect = 2.0e-31, P = 2.0e-31
 Identities = 77/227 (33%), Positives = 119/227 (52%)

Query:    45 EALTITDQDIFDCPICFEPLTVPVFQCVNGHLACSDCCAKIKRNCPTCSSPTVIVRNWAI 104
             +++T+ + ++ +CP CF+PL  P+FQC NGHLAC  CC K+K+ C  C  P   VR  A+
Sbjct:    74 KSVTLPNSNVLECPNCFDPLKKPIFQCNNGHLACFLCCIKLKKRCSFCKLPIGDVRCRAM 133

Query:   105 EKVIELVQVNCKNAEYGCQQKMSFSKK-RGHEKTCQHSPLPCPLSDCSFLGCSSQFVRHF 163
             EKVI+   V+C NA YGC+Q  ++  + + HEK C  +P  CP+ DC+++G     + HF
Sbjct:   134 EKVIKAGLVSCSNAIYGCKQSTTYGNQLQSHEKVCVFAPCSCPIKDCNYIGFYKDLINHF 193

Query:   164 MAKHNISAVPFKYNSXXXXX--XXXXXXXXXGKFSVLQEEKNDDVLFILNNNTGSLGNLV 221
              A H +S  P   NS                 K  +  EEK  + LF++    GS G   
Sbjct:   194 RATHKVS--PGDINSFVFDRPVIFGLDLDSSDKMVIFVEEKQGN-LFVVQGFIGSHGVYA 250

Query:   222 SVCCIASVRKDL--YYDIVARCVTGTTLKIQSSTWS-SKVRSDIPSP 265
             +V  IA +  ++  +   +AR    +TL++     +  K+RS    P
Sbjct:   251 TVSHIAPMVPEVRKFSCSLARLRPYSTLRLGLEVKNIQKLRSQEEQP 297

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IEA;ISS

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA;ISS

GO:0007275 "multicellular organismal development" evidence=IEA;ISS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA

TAIR|locus:2195180 AT1G66630 [Arabidopsis thaliana (taxid:3702)]

 Score = 344 (126.2 bits), Expect = 2.6e-31, P = 2.6e-31
 Identities = 75/210 (35%), Positives = 109/210 (51%)

Query:    23 PKRQRKNNGHDEEEDGSCKNGSE---ALTITDQDIFDCPICFEPLTVPVFQCVNGHLACS 79
             PKRQR  +    E  G   +GSE   + T+ + D+ DCPIC+  L  P++QC NGH+ACS
Sbjct:    15 PKRQRPVS---MENVGGTASGSEVARSATLLELDLLDCPICYHKLGAPIYQCDNGHIACS 71

Query:    80 DCCAKIKRNCPTCSSPTVIVRNWAIEKVIELVQVNCKNAEYGCQQKMSFSKKR--GHEKT 137
              CC K+K  CP CS      R+  +EK++E V V+C NA+YGC +K+ +  +    HE+ 
Sbjct:    72 SCCKKVKYKCPYCSLRIGFFRSRILEKIVEAVVVSCPNAKYGCTEKIPYDNESESAHERV 131

Query:   138 CQHSPLPCPLSDCSFLGCSSQFVRHFMAKHNISAVPFKYNSXXXXXXXXXXXXXXGKFSV 197
             C+ +   CP  +C + G  +   RH+ A+H      FK                   F V
Sbjct:   132 CEFTLCYCPEPECKYTGVYTDLYRHYHAEHKTDHSWFKCGEYNNAWLHVTGEKLS--FLV 189

Query:   198 LQEEKNDDVLFILNNNTGSLGNLVSVCCIA 227
             LQE + D  L ++  +  S G  V+V CIA
Sbjct:   190 LQEYE-DGPLVVVQCSMESHGICVTVNCIA 218

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA;ISS

GO:0007275 "multicellular organismal development" evidence=IEA;ISS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA

TAIR|locus:2153754 AT5G37890 [Arabidopsis thaliana (taxid:3702)]

 Score = 331 (121.6 bits), Expect = 6.2e-30, P = 6.2e-30
 Identities = 78/240 (32%), Positives = 113/240 (47%)

Query:    15 GDGEGPSSPKRQRKNNGHDEEEDGSCKNGSEALTITDQDIFDCPICFEPLTVPVFQCVNG 74
             G+G G +S   Q++     +      K  S  L   D +I DCPIC+E  T+P+FQC NG
Sbjct:    11 GEGIGSNSILSQKRQLSSSDAAKRDAKKRSTMLM--DLEILDCPICYEAFTIPIFQCDNG 68

Query:    75 HLACSDCCAKIKRNCPTCSSPTVIVRNWAIEKVIELVQVNCKNAEYGCQQKMSFSKKRGH 134
             HLACS CC K+   CP C+SP    R  A+E V+E + + C NA+ GC++ +S+ K+  H
Sbjct:    69 HLACSSCCPKLNNKCPACTSPVGHNRCRAMESVLESILIPCPNAKLGCKKNVSYGKELTH 128

Query:   135 EKTCQHSPLPCPLSDCSFLGCSSQFVRHFMAKH-NISAVPFKYNSXXXXXXXXXXXXXXG 193
             EK C  S   CP  DC++         H+   H  I+ +    N+               
Sbjct:   129 EKECMFSHCACPALDCNYTSSYKDLYTHYRITHMEINQI----NTFICDIPLSVRMNISK 184

Query:   194 KFSVLQEEKNDDVLFILNNNTGSLGNLVSVCCIASVRKDL--YYDIVARCVTGTTLKIQS 251
             K  +  E   +  LF +       G  V+V CIA    +L  Y   ++  V G T+  QS
Sbjct:   185 KILIRTEHLTNH-LFAVQCFREPYGVYVTVSCIAPSSPELSQYSYALSYTVDGHTVIYQS 243

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IEA;ISS

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA;ISS

GO:0007275 "multicellular organismal development" evidence=IEA;ISS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA

TAIR|locus:2195175 AT1G66620 [Arabidopsis thaliana (taxid:3702)]

 Score = 330 (121.2 bits), Expect = 7.9e-30, P = 7.9e-30
 Identities = 59/152 (38%), Positives = 88/152 (57%)

Query:    17 GEGPSSP-KRQRKNNGHDEEEDGSCKNGSEALTITDQDIFDCPICFEPLTVPVFQCVNGH 75
             GE  +S  KRQR  +  +  E+G     + + T+ + D+ DCPIC   LT P+FQC NGH
Sbjct:     3 GEASTSRRKRQRVPSSVESVENGGGDAVARSGTLFELDLLDCPICCHALTSPIFQCDNGH 62

Query:    76 LACSDCCAKIKRNCPTCSSPTVIVRNWAIEKVIELVQVNCKNAEYGCQQKMSFSKKRGHE 135
             +ACS CC K++  CP+C+ P    R+  +E+V+E V V C N ++GC +K S+ K+  HE
Sbjct:    63 IACSSCCTKLRNKCPSCALPIGNFRSRIMERVVEAVMVTCPNVKHGCTEKFSYGKELIHE 122

Query:   136 KTCQHSPLPCPLSDCSFLGCSSQFVRHFMAKH 167
             K C+ +   CP  +C++ G       HF   H
Sbjct:   123 KDCRFALCYCPAPNCNYSGVYKDLYSHFYVNH 154

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA;ISS

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA;ISS

GO:0007275 "multicellular organismal development" evidence=IEA;ISS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA

TAIR|locus:2033354 AT1G66660 [Arabidopsis thaliana (taxid:3702)]

 Score = 299 (110.3 bits), Expect = 8.6e-30, Sum P(2) = 8.6e-30
 Identities = 66/211 (31%), Positives = 103/211 (48%)

Query:    18 EGPSSPKRQRKNNGHDEEEDGSCKNGSEALTITDQDIFDCPICFEPLTVPVFQCVNGHLA 77
             E     + + + N   +E+ GS K+ S+ + +   D+ DCP C EPL  P++QC NGHLA
Sbjct:    68 EEEEDEEEEEEENVTTDEQSGSPKS-SQPVKLQSSDVLDCPTCCEPLKRPIYQCSNGHLA 126

Query:    78 CSDCCAKIKRNCPTCSSPTVIVRNWAIEKVIELVQVNCKNAEYGCQQKMSFSKKRGHEKT 137
             CS CC K+ + C  C      +R  A+EKVIE   V C NA++GC++  ++  +  HEK 
Sbjct:   127 CSSCCQKLNKKCSFCRCNIGDIRCRAMEKVIEASIVPCPNAKHGCKETTTYCNQSSHEKV 186

Query:   138 CQHSPLPCPLSDCSFLGCSSQFVRHFMAKHNI-SAVPFKYNSXXXXXXXXXXXXXXGKFS 196
             C+     CP+S+C+++   S    H  +  ++       +                 K  
Sbjct:   187 CKFVRCSCPVSNCNYVSSYSNLKSHACSTAHVWGEDDIHFQLVIDRPRIFNMNLGRKKTV 246

Query:   197 VLQEEKNDDVLFILNNNTGSLGNLVSVCCIA 227
             V +EEK  D L ++    G  G  V+V  IA
Sbjct:   247 VFKEEKEGD-LIVVQAFKGLEGVYVTVNRIA 276

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IEA;ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA;ISS

GO:0007275 "multicellular organismal development" evidence=IEA;ISS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA

TAIR|locus:2153774 AT5G37910 [Arabidopsis thaliana (taxid:3702)]

 Score = 307 (113.1 bits), Expect = 2.2e-27, P = 2.2e-27
 Identities = 52/128 (40%), Positives = 69/128 (53%)

Query:    41 KNGSEALTITDQDIFDCPICFEPLTVPVFQCVNGHLACSDCCAKIKRNCPTCSSPTVIVR 100
             K    A+ + D DI DCPIC E LT P+FQC NGHLAC  CC K+   CP C+ P    R
Sbjct:    22 KRQRSAIVLLDLDILDCPICCEALTSPIFQCDNGHLACGSCCPKLSNKCPACTLPVGHSR 81

Query:   101 NWAIEKVIELVQVNCKNAEYGCQQKMSFSKKRGHEKTCQHSPLPCPLSDCSFLGCSSQFV 160
             + A+E V+E + + C N  +GC +   + K+  HEK C  S   CP S C + G      
Sbjct:    82 SRAMESVLESILIPCPNVRFGCTKSFFYGKESAHEKECIFSQCSCPSSVCDYTGSYKDLY 141

Query:   161 RHFMAKHN 168
              H+   H+
Sbjct:   142 AHYKLTHS 149

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IEA;ISS

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA;ISS

GO:0007275 "multicellular organismal development" evidence=IEA;ISS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA

UNIPROTKB|P29304 sina "E3 ubiquitin-protein ligase sina" [Drosophila virilis (taxid:7244)]

 Score = 269 (99.8 bits), Expect = 2.3e-23, P = 2.3e-23
 Identities = 53/168 (31%), Positives = 82/168 (48%)

Query:     3 MAKNSAKAGKRVGDGEGPSSPKRQRKNNGHDEEEDGSCKNGSEALTITD-QDIFDCPICF 61
             +A  +A          G S+      N         S   G +A    D   +F+CP+CF
Sbjct:    18 VAAATAVVATNTSSSTGSSAGNTSSANTSSSSSSSLSSAGGGDAGMSADLTSLFECPVCF 77

Query:    62 EPLTVPVFQCVNGHLACSDCCAKIKRNCPTCSSPTVIVRNWAIEKVIELVQVNCKNAEYG 121
             + +  P+ QC +GHL C  C +K+   CPTC  P   +RN A+E+V   V+  CK++ YG
Sbjct:    78 DYVLPPILQCSSGHLVCVSCRSKLTC-CPTCRGPLANIRNLAMEEVASNVKFPCKHSGYG 136

Query:   122 CQQKMSFSKKRGHEKTCQHSPL--PCPLSDCSFLGCSSQFVRHFMAKH 167
             C   + +++K  HE+TC+  P   PCP + C + G     ++H M  H
Sbjct:   137 CTASLVYTEKTEHEETCECRPYLCPCPGASCKWQGPLDLVMQHLMMSH 184

GO:0005634 "nucleus" evidence=ISS

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=ISS

GO:0007423 "sensory organ development" evidence=ISS

GO:0016874 "ligase activity" evidence=ISS

GO:0045676 "regulation of R7 cell differentiation" evidence=ISS

UNIPROTKB|Q8I147 sina "E3 ubiquitin-protein ligase sina" [Drosophila willistoni (taxid:7260)]

 Score = 267 (99.0 bits), Expect = 3.8e-23, P = 3.8e-23
 Identities = 52/154 (33%), Positives = 78/154 (50%)

Query:    17 GEGPSSPKRQRKNNGHDEEEDGSCKNGSEALTITD-QDIFDCPICFEPLTVPVFQCVNGH 75
             G   S+      N         S   G +A    D   +F+CP+CF+ +  P+ QC +GH
Sbjct:    49 GGSSSAGTTSSANTSSSSSSSLSSAGGGDAGMSADLTSLFECPVCFDYVLPPILQCSSGH 108

Query:    76 LACSDCCAKIKRNCPTCSSPTVIVRNWAIEKVIELVQVNCKNAEYGCQQKMSFSKKRGHE 135
             L C  C +K+   CPTC  P   +RN A+EKV   V+  CK++ YGC   + +++K  HE
Sbjct:   109 LVCVSCRSKLTC-CPTCRGPLANIRNLAMEKVASNVKFPCKHSGYGCTASLVYTEKTEHE 167

Query:   136 KTCQHSPL--PCPLSDCSFLGCSSQFVRHFMAKH 167
             +TC+  P   PCP + C + G     ++H M  H
Sbjct:   168 ETCECRPYLCPCPGASCKWQGPLDLVMQHLMMSH 201

GO:0005634 "nucleus" evidence=ISS

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=ISS

GO:0007423 "sensory organ development" evidence=ISS

GO:0016874 "ligase activity" evidence=ISS

GO:0045676 "regulation of R7 cell differentiation" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.3.2	0.691

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	269
pfam03145	198	pfam03145, Sina, Seven in absentia protein family	3e-14
pfam13923	45	pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RI	3e-05

>gnl|CDD|190542 pfam03145, Sina, Seven in absentia protein family

 Score = 69.0 bits (169), Expect = 3e-14
 Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 2/72 (2%)

Query: 99  VRNWAIEKVIELVQVNCKNAEYGCQQKMSFSKKRGHEKTCQHSPL--PCPLSDCSFLGCS 156
           +RN A+EKV   V   CK+A  GC  ++    K  HE+ C++ P   P P + C + G  
Sbjct: 1   IRNLAVEKVASKVLFPCKHAALGCPVRLPLQLKDWHEERCEYKPYFCPMPGAKCKWQGDE 60

Query: 157 SQFVRHFMAKHN 168
              + H  A H 
Sbjct: 61  DDLMPHLTADHK 72

The seven in absentia (sina) gene was first identified in Drosophila. The Drosophila Sina protein is essential for the determination of the R7 pathway in photoreceptor cell development: the loss of functional Sina results in the transformation of the R7 precursor cell to a non- neuronal cell type. The Sina protein contains an N-terminal RING finger domain pfam00097. Through this domain, Sina binds E2 ubiquitin-conjugating enzymes (UbcD1) Sina also interacts with Tramtrack (TTK88) via PHYL. Tramtrack is a transcriptional repressor that blocks photoreceptor determination, while PHYL down-regulates the activity of TTK88. In turn, the activity of PHYL requires the activation of the Sevenless receptor tyrosine kinase, a process essential for R7 determination. It is thought that thus Sina targets TTK88 for degradation, therefore promoting the R7 pathway. Murine and human homologues of Sina have also been identified. The human homologue Siah-1 also binds E2 enzymes (UbcH5) and through a series of physical interactions, targets beta-catenin for ubiquitin degradation. Siah-1 expression is enhanced by p53, itself promoted by DNA damage. Thus this pathway links DNA damage to beta-catenin degradation. Sina proteins, therefore, physically interact with a variety of proteins. The N-terminal RING finger domain that binds ubiquitin conjugating enzymes is described in pfam00097, and does not form part of the alignment for this family. The remainder C-terminal part is involved in interactions with other proteins, and is included in this alignment. In addition to the Drosophila protein and mammalian homologues, whose similarity was noted previously, this family also includes putative homologues from Caenorhabditis elegans, Arabidopsis thaliana. Length = 198

>gnl|CDD|206094 pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RING finger)

 Score = 40.2 bits (94), Expect = 3e-05
 Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 3/43 (6%)

Query: 53 DIFDCPICFEPLTVPVFQCVNGHLACSDCCAKI---KRNCPTC 92
          +  +CPIC + L  PV     GH+ C +C  +    K  CP C
Sbjct: 1  EELECPICLDLLRDPVVLTPCGHVFCRECILRYLKKKSKCPIC 43

Length = 45

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	269
KOG3002	299	consensus Zn finger protein [General function pred	100.0
PF03145	198	Sina: Seven in absentia protein family; InterPro:	99.95
KOG0297	391	consensus TNF receptor-associated factor [Signal t	99.46
cd03829	127	Sina Seven in absentia (Sina) protein family, C-te	99.1
PF15227	42	zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB:	98.81
KOG0823	230	consensus Predicted E3 ubiquitin ligase [Posttrans	98.8
KOG0320	187	consensus Predicted E3 ubiquitin ligase [Posttrans	98.73
PF14835	65	zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM	98.71
PLN03208	193	E3 ubiquitin-protein ligase RMA2; Provisional	98.69
smart00504	63	Ubox Modified RING finger domain. Modified RING fi	98.67
PF13923	39	zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger);	98.66
KOG0287	442	consensus Postreplication repair protein RAD18 [Re	98.55
PF13920	50	zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger);	98.53
PF02176	60	zf-TRAF: TRAF-type zinc finger; PDB: 2EOD_A 2YUC_A	98.51
KOG0317	293	consensus Predicted E3 ubiquitin ligase, integral	98.49
TIGR00599	397	rad18 DNA repair protein rad18. This family is bas	98.47
PF13639	44	zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C	98.39
PF00097	41	zf-C3HC4: Zinc finger, C3HC4 type (RING finger); I	98.35
PF04564	73	U-box: U-box domain; InterPro: IPR003613 Quality c	98.31
PHA02929	238	N1R/p28-like protein; Provisional	98.27
PF14634	44	zf-RING_5: zinc-RING finger domain	98.22
cd00162	45	RING RING-finger (Really Interesting New Gene) dom	98.15
COG5432	391	RAD18 RING-finger-containing E3 ubiquitin ligase [	98.03
PF13445	43	zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.	97.94
COG5574	271	PEX10 RING-finger-containing E3 ubiquitin ligase [	97.85
KOG2164	513	consensus Predicted E3 ubiquitin ligase [Posttrans	97.84
PHA02926	242	zinc finger-like protein; Provisional	97.8
smart00184	39	RING Ring finger. E3 ubiquitin-protein ligase acti	97.74
PF02176	60	zf-TRAF: TRAF-type zinc finger; PDB: 2EOD_A 2YUC_A	97.61
TIGR00570	309	cdk7 CDK-activating kinase assembly factor MAT1. A	97.58
KOG0311	381	consensus Predicted E3 ubiquitin ligase [Posttrans	97.46
PF12678	73	zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766	97.42
KOG2177	386	consensus Predicted E3 ubiquitin ligase [Posttrans	97.37
KOG0978	698	consensus E3 ubiquitin ligase involved in syntaxin	97.33
PF07800	162	DUF1644: Protein of unknown function (DUF1644); In	97.23
PLN03086	567	PRLI-interacting factor K; Provisional	96.93
PLN03086	567	PRLI-interacting factor K; Provisional	96.88
COG5152	259	Uncharacterized conserved protein, contains RING a	96.73
PF11789	57	zf-Nse: Zinc-finger of the MIZ type in Nse subunit	96.66
KOG2879	298	consensus Predicted E3 ubiquitin ligase [Posttrans	96.59
KOG1813	313	consensus Predicted E3 ubiquitin ligase [Posttrans	96.5
KOG4159	398	consensus Predicted E3 ubiquitin ligase [Posttrans	96.5
KOG2660	331	consensus Locus-specific chromosome binding protei	96.43
PF12861	85	zf-Apc11: Anaphase-promoting complex subunit 11 RI	96.37
KOG4265	349	consensus Predicted E3 ubiquitin ligase [Posttrans	96.34
KOG4739	233	consensus Uncharacterized protein involved in syna	96.14
KOG0802	543	consensus E3 ubiquitin ligase [Posttranslational m	95.9
PF14570	48	zf-RING_4: RING/Ubox like zinc-binding domain; PDB	95.88
KOG4172	62	consensus Predicted E3 ubiquitin ligase [Posttrans	95.73
COG5540	374	RING-finger-containing ubiquitin ligase [Posttrans	95.62
COG5222	427	Uncharacterized conserved protein, contains RING Z	95.34
KOG0824	324	consensus Predicted E3 ubiquitin ligase [Posttrans	95.3
KOG1785	563	consensus Tyrosine kinase negative regulator CBL [	95.15
COG5236	493	Uncharacterized conserved protein, contains RING Z	95.1
COG5175	480	MOT2 Transcriptional repressor [Transcription]	95.05
PF05290	140	Baculo_IE-1: Baculovirus immediate-early protein (	94.63
KOG4275	350	consensus Predicted E3 ubiquitin ligase [Posttrans	94.57
COG5243	491	HRD1 HRD ubiquitin ligase complex, ER membrane com	94.06
PF14447	55	Prok-RING_4: Prokaryotic RING finger family 4	93.6
KOG4692	489	consensus Predicted E3 ubiquitin ligase [Posttrans	93.47
KOG1002	791	consensus Nucleotide excision repair protein RAD16	93.4
KOG1039	344	consensus Predicted E3 ubiquitin ligase [Posttrans	93.22
KOG4628	348	consensus Predicted E3 ubiquitin ligase [Posttrans	92.87
PF11793	70	FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.	91.94
KOG4367	699	consensus Predicted Zn-finger protein [Function un	91.8
PF05605	54	zf-Di19: Drought induced 19 protein (Di19), zinc-b	91.34
KOG3039	303	consensus Uncharacterized conserved protein [Funct	91.31
PF04641	260	Rtf2: Rtf2 RING-finger	90.94
KOG1571	355	consensus Predicted E3 ubiquitin ligase [Posttrans	90.86
KOG0825	1134	consensus PHD Zn-finger protein [General function	89.93
KOG0804	493	consensus Cytoplasmic Zn-finger protein BRAP2 (BRC	89.68
KOG2932	389	consensus E3 ubiquitin ligase involved in ubiquiti	89.32
PF10571	26	UPF0547: Uncharacterised protein family UPF0547; I	89.01
COG5219	1525	Uncharacterized conserved protein, contains RING Z	89.0
KOG1814	445	consensus Predicted E3 ubiquitin ligase [Posttrans	88.73
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	88.03
KOG0826	357	consensus Predicted E3 ubiquitin ligase involved i	87.38
KOG1734	328	consensus Predicted RING-containing E3 ubiquitin l	86.91
PF13909	24	zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W	86.45
PF07191	70	zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807	86.11
KOG2817	394	consensus Predicted E3 ubiquitin ligase [Posttrans	85.72
KOG3608	467	consensus Zn finger proteins [General function pre	85.14
PF07975	51	C1_4: TFIIH C1-like domain; InterPro: IPR004595 Al	84.63
COG5194	88	APC11 Component of SCF ubiquitin ligase and anapha	84.62
KOG0828	636	consensus Predicted E3 ubiquitin ligase [Posttrans	84.22
PF02891	50	zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR0041	84.11
KOG3161	861	consensus Predicted E3 ubiquitin ligase [Posttrans	83.89
KOG1001	674	consensus Helicase-like transcription factor HLTF/	82.02
KOG4185	296	consensus Predicted E3 ubiquitin ligase [Posttrans	81.78
COG2888	61	Predicted Zn-ribbon RNA-binding protein with a fun	80.8
PF13913	25	zf-C2HC_2: zinc-finger of a C2HC-type	80.51

>KOG3002 consensus Zn finger protein [General function prediction only]

Probab=100.00  E-value=5.5e-38  Score=277.00  Aligned_cols=219  Identities=33%  Similarity=0.607  Sum_probs=183.3

Q ss_pred             eecCCCCeeeccCCCCCCcCceeeccCCceechhchhhcCCCCCCCCCCCccccchhHHHHhhcceecccCCCCCccccc
Q 038068           47 LTITDQDIFDCPICFEPLTVPVFQCVNGHLACSDCCAKIKRNCPTCSSPTVIVRNWAIEKVIELVQVNCKNAEYGCQQKM  126 (269)
Q Consensus        47 ~~~~~~~~l~C~iC~~~l~~Pv~~c~cgH~fC~~C~~~~~~~Cp~C~~~~~~~~~~~l~~~i~~l~v~C~~~~~GC~~~~  126 (269)
                      +...+.+.|.||||.+++.+|++||..||+.|+.|..++...||.|+.+++.+|+++||++++++.|+|+|..+||++.+
T Consensus        41 ~~~~~~~lleCPvC~~~l~~Pi~QC~nGHlaCssC~~~~~~~CP~Cr~~~g~~R~~amEkV~e~~~vpC~~~~~GC~~~~  120 (299)
T KOG3002|consen   41 VTLLDLDLLDCPVCFNPLSPPIFQCDNGHLACSSCRTKVSNKCPTCRLPIGNIRCRAMEKVAEAVLVPCKNAKLGCTKSF  120 (299)
T ss_pred             ccccchhhccCchhhccCcccceecCCCcEehhhhhhhhcccCCccccccccHHHHHHHHHHHhceecccccccCCceee
Confidence            44556699999999999999999999999999999988888999999999999999999999999999999999999999


Q ss_pred             cccchhhhhccCCCeeeeCCCC--CCCCccChhHHhhhhhhhCCCCcc-----ceeecceEEEEeeccCCCCCCceEEEE
Q 038068          127 SFSKKRGHEKTCQHSPLPCPLS--DCSFLGCSSQFVRHFMAKHNISAV-----PFKYNSLLNVNLNVNDINIDGKFSVLQ  199 (269)
Q Consensus       127 ~~~~~~~He~~C~~~p~~Cp~~--~C~~~g~~~~l~~Hl~~~H~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~~~~  199 (269)
                      +|.+...||+.|.|+|+.||.+  .|+|.|..++|..|++..|+..++     .+.|.......+....-  --++. +.
T Consensus       121 ~Y~~~~~HE~~C~f~~~~CP~p~~~C~~~G~~~~l~~H~~~~hk~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~  197 (299)
T KOG3002|consen  121 PYGEKSKHEKVCEFRPCSCPVPGAECKYTGSYKDLYAHLNDTHKSDIITLTGFDFVFVATDENLLGAATW--TLKTS-VC  197 (299)
T ss_pred             ccccccccccccccCCcCCCCCcccCCccCcHHHHHHHHHhhChhhhhhccccceecccCCccccccchh--heeee-ec
Confidence            9999999999999999999998  999999999999999999999776     33333322222221100  00211 12


Q ss_pred             eeeCCCeEEEEEcCccCccceEEEEEeecCC---CCCeEEEEEEecCCeEEEEeeeeeeecc-ccCCCCCCCCC
Q 038068          200 EEKNDDVLFILNNNTGSLGNLVSVCCIASVR---KDLYYDIVARCVTGTTLKIQSSTWSSKV-RSDIPSPFGFF  269 (269)
Q Consensus       200 ~~~~~~~lF~l~~~~~~~g~~v~v~ci~~~~---~~f~Y~l~~~~~~~~~l~~~s~~~~~~~-~~~~~~~~~~~  269 (269)
                      .+..++.+|.++...++.|.+++|++|.|.+   .+|+|+|.+. +++++|+|||.++|+.+ ++...|..+|+
T Consensus       198 ~~~~~~~~~~~q~~~~~~~~y~tv~~i~~~~~e~~~fsy~L~~~-~~~~klt~~s~~~s~~~kvs~~~p~~dfm  270 (299)
T KOG3002|consen  198 FGREFGLLFEVQCFREPHGVYVTVNRIAPSAPEAGEFSYSLALG-GSGRKLTWQSPPRSIIQKVSKVRPEDDFM  270 (299)
T ss_pred             CcEEEeeeeeehhhcCCCceEEEeehhccCCCcccccceeeecC-CCCceEeecCCcceeecccceeccCCCce
Confidence            3346678888888888889999999998876   8899999999 89999999999999975 55466666654

>PF03145 Sina: Seven in absentia protein family; InterPro: IPR018121 The seven in absentia (sina) gene was first identified in Drosophila

Probab=99.95  E-value=8.7e-28  Score=203.14  Aligned_cols=159  Identities=31%  Similarity=0.524  Sum_probs=98.9

Q ss_pred             ccchhHHHHhhcceecccCCCCCccccccccchhhhhccCCCeeeeCCC--CCCCCccChhHHhhhhhhhCCCCccceee
Q 038068           99 VRNWAIEKVIELVQVNCKNAEYGCQQKMSFSKKRGHEKTCQHSPLPCPL--SDCSFLGCSSQFVRHFMAKHNISAVPFKY  176 (269)
Q Consensus        99 ~~~~~l~~~i~~l~v~C~~~~~GC~~~~~~~~~~~He~~C~~~p~~Cp~--~~C~~~g~~~~l~~Hl~~~H~~~~~~~~~  176 (269)
                      +||++||++++++++||+|+.+||.+.++|.++.+||++|+|+|+.||.  .+|+|.|..++|..|+...|.|.++...+
T Consensus         1 iR~~alE~v~~~~~~pC~~~~~GC~~~~~~~~~~~HE~~C~~~p~~CP~~~~~C~~~G~~~~l~~Hl~~~H~~~~~~~~~   80 (198)
T PF03145_consen    1 IRNRALEKVAESIKFPCKNAKYGCTETFPYSEKREHEEECPFRPCSCPFPGSGCDWQGSYKELLDHLRDKHSWNVTDNGT   80 (198)
T ss_dssp             --------------EE-CCGGGT---EE-GGGHHHHHHT-TTSEEE-SSSSTT---EEECCCHHHHHHHHTTTSEEEESS
T ss_pred             CCcHHHHHHHhhceecCCCCCCCCcccccccChhhHhccCCCcCCcCCCCCCCccccCCHHHHHHHHHHHCCCccccCcc
Confidence            4789999999999999999999999999999999999999999999999  79999999999999999999997754322


Q ss_pred             cceEEEEeeccCCCCCCceEEEEee-eCCCeEEEEEcCccC-ccceE---EEEEeecCC--CCCeEEEEEEecCCeEEEE
Q 038068          177 NSLLNVNLNVNDINIDGKFSVLQEE-KNDDVLFILNNNTGS-LGNLV---SVCCIASVR--KDLYYDIVARCVTGTTLKI  249 (269)
Q Consensus       177 ~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~lF~l~~~~~~-~g~~v---~v~ci~~~~--~~f~Y~l~~~~~~~~~l~~  249 (269)
                         +.+.+........+...|++.. .+++.+|+|++.... .|..+   .|++||+.+  .+|+|+|++. +++++|+|
T Consensus        81 ---~~~~f~~~~~~~~~~~~~~~~~~~~~~~~F~l~~~~~~~~~~~v~~~~v~~~G~~~~a~~f~Yel~~~-~~~rkl~~  156 (198)
T PF03145_consen   81 ---FSISFLHSDINSVESPDWVLVQFSCFGKLFLLYVQKFELEGNAVYFAVVCYIGPAEEASNFSYELEVR-SNGRKLTW  156 (198)
T ss_dssp             ----EEEEEECTTT-SSSEEEEEEE-EETTEEEEEEEEEEEEETEEEEEEEEEESS-HHHHTTEEEEEEEE-ETTEEEEE
T ss_pred             ---ceEEEeeecccccCCceEEEeecccCCccEEEEEEEEccCCceEEEEEEEEccCchhhhceEEEEEEe-cCCcEEEE
Confidence               1111111111212244555544 689999999965432 34443   355567765  9999999999 89999999


Q ss_pred             eeeeeeeccccC
Q 038068          250 QSSTWSSKVRSD  261 (269)
Q Consensus       250 ~s~~~~~~~~~~  261 (269)
                      |+.++||++..+
T Consensus       157 ~~~p~si~~~~~  168 (198)
T PF03145_consen  157 QSFPRSIREDID  168 (198)
T ss_dssp             EE--EETTT-SH
T ss_pred             EEcCcchhhhHH
Confidence            999999987544

The Drosophila Sina protein is essential for the determination of the R7 pathway in photoreceptor cell development: the loss of functional Sina results in the transformation of the R7 precursor cell to a non-neuronal cell type. The Sina protein contains an N-terminal RING finger domain C3HC4-type. Through this domain, Sina binds E2 ubiquitin-conjugating enzymes (UbcD1) Sina also interacts with Tramtrack (TTK88) via PHYL. Tramtrack is a transcriptional repressor that blocks photoreceptor determination, while PHYL down-regulates the activity of TTK88. In turn, the activity of PHYL requires the activation of the Sevenless receptor tyrosine kinase, a process essential for R7 determination. It is thought that Sina targets TTK88 for degradation, therefore promoting the R7 pathway. Murine and human homologues of Sina have also been identified. The human homologue Siah-1 [] also binds E2 enzymes (UbcH5) and through a series of physical interactions, targets beta-catenin for ubiquitin degradation. Siah-1 expression is enhanced by p53, itself promoted by DNA damage. Thus this pathway links DNA damage to beta-catenin degradation [, ]. Sina proteins, therefore, physically interact with a variety of proteins. The N-terminal RING finger domain that binds ubiquitin conjugating enzymes is a C3HC4-type, and does not form part of the alignment for this family. The remainder C-terminal part is involved in interactions with other proteins, and is included in this alignment. In addition to the Drosophila protein and mammalian homologues, whose similarity was noted previously, this family also includes putative homologues from Caenorhabditis elegans, Arabidopsis thaliana.; GO: 0006511 ubiquitin-dependent protein catabolic process, 0007275 multicellular organismal development, 0005634 nucleus; PDB: 2A25_A 1K2F_B 2AN6_C.

>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]

Probab=99.46  E-value=6e-14  Score=129.83  Aligned_cols=123  Identities=24%  Similarity=0.533  Sum_probs=109.0

Q ss_pred             CeeeccCCCCCCcCceeeccCCceechhchhhc---CCCCCCCCCCCccc----cchhHHHHhhcceecccCCCCCcccc
Q 038068           53 DIFDCPICFEPLTVPVFQCVNGHLACSDCCAKI---KRNCPTCSSPTVIV----RNWAIEKVIELVQVNCKNAEYGCQQK  125 (269)
Q Consensus        53 ~~l~C~iC~~~l~~Pv~~c~cgH~fC~~C~~~~---~~~Cp~C~~~~~~~----~~~~l~~~i~~l~v~C~~~~~GC~~~  125 (269)
                      +++.|++|..++.+|+....|||.||..|+..+   ...||.|+..+...    ....+.+.+.++.+.|.+...||.|.
T Consensus        20 ~~l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~~~~cp~~~~~~~~~~~~~~~~~~~~~~~~l~i~c~~~~~GC~~~   99 (391)
T KOG0297|consen   20 ENLLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSNHQKCPVCRQELTQAEELPVPRALRRELLKLPIRCIFASRGCRAD   99 (391)
T ss_pred             ccccCccccccccCCCCCCCCCCcccccccchhhccCcCCcccccccchhhccCchHHHHHHHHhcccccccCCCCcccc
Confidence            679999999999999832489999999999998   46899998877642    24678889999999999999999999


Q ss_pred             ccccchhhhhccCCCeeeeCCCCCCCCccChhHHhhhhhhhCCCCccceeecc
Q 038068          126 MSFSKKRGHEKTCQHSPLPCPLSDCSFLGCSSQFVRHFMAKHNISAVPFKYNS  178 (269)
Q Consensus       126 ~~~~~~~~He~~C~~~p~~Cp~~~C~~~g~~~~l~~Hl~~~H~~~~~~~~~~~  178 (269)
                      +....++.|+..|  .++.||+ +|+..+.+.++.+|+...+......+.+.+
T Consensus       100 ~~l~~~~~Hl~~c--~~~~C~~-~C~~~~~~~d~~~hl~~~C~~~~~~c~~~~  149 (391)
T KOG0297|consen  100 LELEALQGHLSTC--DPLKCPH-RCGVQVPRDDLEDHLEAECPRRSLKCSLCQ  149 (391)
T ss_pred             ccHHHHHhHhccC--CcccCcc-ccccccchHHHHHHHhcccccccccchhhc
Confidence            9999999999999  8999998 599999999999999999988887776664

>cd03829 Sina Seven in absentia (Sina) protein family, C-terminal substrate binding domain; composed of the Drosophila Sina protein, the mammalian Sina homolog (Siah), the plant protein SINAT5, and similar proteins

Probab=99.10  E-value=3e-11  Score=91.73  Aligned_cols=77  Identities=16%  Similarity=0.151  Sum_probs=62.0

Q ss_pred             EeeccCCCCCCceEEEEeeeCCCeEEEEEcCccCc-cc----eEEEEEeecCC--CCCeEEEEEEecCCeEEEEeeeeee
Q 038068          183 NLNVNDINIDGKFSVLQEEKNDDVLFILNNNTGSL-GN----LVSVCCIASVR--KDLYYDIVARCVTGTTLKIQSSTWS  255 (269)
Q Consensus       183 ~l~~~~~~~~~~~~~~~~~~~~~~lF~l~~~~~~~-g~----~v~v~ci~~~~--~~f~Y~l~~~~~~~~~l~~~s~~~~  255 (269)
                      .|.+| +++.|...|++...++|+.|+|+..+..+ +.    .+.|+.||+..  .+|+|.|++. ++||+|+|||+|||
T Consensus        11 fl~t~-~~~~~a~~w~mv~sCfG~~F~L~~Ek~~l~~~~~~y~A~~~~iG~~~eA~nf~Y~Lel~-~n~RkL~we~~PRS   88 (127)
T cd03829          11 FLATD-INLPGATDWVMMQSCFGHHFMLVLEKQELYEGHQQFFAFVQLIGTEKQAENFTYRLELN-GNRRRLTWEATPRS   88 (127)
T ss_pred             EEecC-CCCccceeeeehhhhcCceEEEEEehhhhcCCcHHHHHHHHHHcCHhHHhcceEEEEEc-CCCcEEEeecCCcc
Confidence            34444 45555666777778999999999987766 32    36788999987  9999999999 99999999999999


Q ss_pred             eccccC
Q 038068          256 SKVRSD  261 (269)
Q Consensus       256 ~~~~~~  261 (269)
                      ||+...
T Consensus        89 Irds~~   94 (127)
T cd03829          89 IREGHA   94 (127)
T ss_pred             HHHhhH
Confidence            997543

Sina, Siah and SINAT5 are RING-containing proteins that function as E3 ubiquitin ligases, acting either as single proteins or as a part of multiprotein complexes. Sina is expressed in many cells in the developing eye but is essential specifically for R7 photoreceptor cell development. Sina cooperates with Phyllopod (Phyl), Ebi and the E2 ubiquitin-conjugating enzyme Ubcd1 to catalyze the ubiquitination and subsequent degradation of Tramtrack (Ttk88); Ttk88 is a transcriptional repressor that blocks photoreceptor differentiation. Similarly, the mammalian homologue Siah1 cooperates with SIP (Siah-interacting protein), Ebi and the adaptor protein Skp1, to target beta-catenin for ubiquitination and degradation via a p53-dependent mechanism. SINAT5 targets NAC1 for ubiquitin-medi

>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A

Probab=98.81  E-value=2.4e-09  Score=67.49  Aligned_cols=35  Identities=37%  Similarity=0.970  Sum_probs=27.1

Q ss_pred             ccCCCCCCcCceeeccCCceechhchhhc-----C--CCCCCC
Q 038068           57 CPICFEPLTVPVFQCVNGHLACSDCCAKI-----K--RNCPTC   92 (269)
Q Consensus        57 C~iC~~~l~~Pv~~c~cgH~fC~~C~~~~-----~--~~Cp~C   92 (269)
                      ||||+++|++||. .+|||+||..|+.++     .  ..||.|
T Consensus         1 CpiC~~~~~~Pv~-l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C   42 (42)
T PF15227_consen    1 CPICLDLFKDPVS-LPCGHSFCRSCLERLWKEPSGSGFSCPEC   42 (42)
T ss_dssp             ETTTTSB-SSEEE--SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred             CCccchhhCCccc-cCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence            8999999999996 599999999999987     1  357766

>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.80  E-value=4.8e-09  Score=88.44  Aligned_cols=46  Identities=35%  Similarity=0.832  Sum_probs=40.8

Q ss_pred             CCCeeeccCCCCCCcCceeeccCCceechhchhhc------CCCCCCCCCCCc
Q 038068           51 DQDIFDCPICFEPLTVPVFQCVNGHLACSDCCAKI------KRNCPTCSSPTV   97 (269)
Q Consensus        51 ~~~~l~C~iC~~~l~~Pv~~c~cgH~fC~~C~~~~------~~~Cp~C~~~~~   97 (269)
                      +-..+.|.||++..++||. +.|||+||+.|+.+|      +..||+|+..++
T Consensus        44 ~~~~FdCNICLd~akdPVv-TlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs   95 (230)
T KOG0823|consen   44 DGGFFDCNICLDLAKDPVV-TLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVS   95 (230)
T ss_pred             CCCceeeeeeccccCCCEE-eecccceehHHHHHHHhhcCCCeeCCccccccc
Confidence            3478999999999999995 689999999999999      467999998775

>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.73  E-value=8.1e-09  Score=83.55  Aligned_cols=45  Identities=31%  Similarity=0.849  Sum_probs=38.0

Q ss_pred             CeeeccCCCCCCcCce-eeccCCceechhchhhc---CCCCCCCCCCCc
Q 038068           53 DIFDCPICFEPLTVPV-FQCVNGHLACSDCCAKI---KRNCPTCSSPTV   97 (269)
Q Consensus        53 ~~l~C~iC~~~l~~Pv-~~c~cgH~fC~~C~~~~---~~~Cp~C~~~~~   97 (269)
                      ..+.||||++.+..-+ +-+.|||+||+.|+...   ...||+|+..++
T Consensus       130 ~~~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk~~~~CP~C~kkIt  178 (187)
T KOG0320|consen  130 GTYKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALKNTNKCPTCRKKIT  178 (187)
T ss_pred             cccCCCceecchhhccccccccchhHHHHHHHHHHHhCCCCCCcccccc
Confidence            6799999999987554 34789999999999987   678999998665

>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B

Probab=98.71  E-value=7.7e-09  Score=69.92  Aligned_cols=56  Identities=30%  Similarity=0.697  Sum_probs=30.0

Q ss_pred             CeeeccCCCCCCcCceeeccCCceechhchhhc-CCCCCCCCCCCc--c-ccchhHHHHh
Q 038068           53 DIFDCPICFEPLTVPVFQCVNGHLACSDCCAKI-KRNCPTCSSPTV--I-VRNWAIEKVI  108 (269)
Q Consensus        53 ~~l~C~iC~~~l~~Pv~~c~cgH~fC~~C~~~~-~~~Cp~C~~~~~--~-~~~~~l~~~i  108 (269)
                      +.|.|++|.++++.||....|.|+||+.|+..- ...||.|..+.-  . ..|+.++.+|
T Consensus         6 ~lLrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~~~CPvC~~Paw~qD~~~NrqLd~~i   65 (65)
T PF14835_consen    6 ELLRCSICFDILKEPVCLGGCEHIFCSSCIRDCIGSECPVCHTPAWIQDIQINRQLDSMI   65 (65)
T ss_dssp             HTTS-SSS-S--SS-B---SSS--B-TTTGGGGTTTB-SSS--B-S-SS----HHHHHHH
T ss_pred             HhcCCcHHHHHhcCCceeccCccHHHHHHhHHhcCCCCCCcCChHHHHHHHhhhhhhccC
Confidence            468999999999999977789999999999875 557999998763  2 3466666553

>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional

Probab=98.69  E-value=1.2e-08  Score=84.57  Aligned_cols=46  Identities=37%  Similarity=0.779  Sum_probs=39.6

Q ss_pred             CCeeeccCCCCCCcCceeeccCCceechhchhhc-------------------CCCCCCCCCCCcc
Q 038068           52 QDIFDCPICFEPLTVPVFQCVNGHLACSDCCAKI-------------------KRNCPTCSSPTVI   98 (269)
Q Consensus        52 ~~~l~C~iC~~~l~~Pv~~c~cgH~fC~~C~~~~-------------------~~~Cp~C~~~~~~   98 (269)
                      .+.+.|+||++.+++|+. +.|||.||..|+.+|                   ...||.|+.++..
T Consensus        16 ~~~~~CpICld~~~dPVv-T~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~   80 (193)
T PLN03208         16 GGDFDCNICLDQVRDPVV-TLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSE   80 (193)
T ss_pred             CCccCCccCCCcCCCcEE-cCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCCh
Confidence            367999999999999995 699999999999887                   1369999998763

>smart00504 Ubox Modified RING finger domain

Probab=98.67  E-value=2.7e-08  Score=68.12  Aligned_cols=56  Identities=25%  Similarity=0.370  Sum_probs=46.4

Q ss_pred             eeeccCCCCCCcCceeeccCCceechhchhhc---CCCCCCCCCCCcc---ccchhHHHHhhc
Q 038068           54 IFDCPICFEPLTVPVFQCVNGHLACSDCCAKI---KRNCPTCSSPTVI---VRNWAIEKVIEL  110 (269)
Q Consensus        54 ~l~C~iC~~~l~~Pv~~c~cgH~fC~~C~~~~---~~~Cp~C~~~~~~---~~~~~l~~~i~~  110 (269)
                      +|.||||.+++.+|+. .+|||+||..|+.++   ...||.|+.++..   ..+..+.+.++.
T Consensus         1 ~~~Cpi~~~~~~~Pv~-~~~G~v~~~~~i~~~~~~~~~cP~~~~~~~~~~l~~~~~l~~~i~~   62 (63)
T smart00504        1 EFLCPISLEVMKDPVI-LPSGQTYERRAIEKWLLSHGTDPVTGQPLTHEDLIPNLALKSAIQE   62 (63)
T ss_pred             CcCCcCCCCcCCCCEE-CCCCCEEeHHHHHHHHHHCCCCCCCcCCCChhhceeCHHHHHHHHh
Confidence            3789999999999985 699999999999988   5689999998853   466777776653

Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.

>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A

Probab=98.66  E-value=1.5e-08  Score=62.82  Aligned_cols=36  Identities=42%  Similarity=1.035  Sum_probs=30.3

Q ss_pred             ccCCCCCCcCceeeccCCceechhchhhc---CCCCCCC
Q 038068           57 CPICFEPLTVPVFQCVNGHLACSDCCAKI---KRNCPTC   92 (269)
Q Consensus        57 C~iC~~~l~~Pv~~c~cgH~fC~~C~~~~---~~~Cp~C   92 (269)
                      |+||.+.+.+|+...+|||+||..|+.++   ...||.|
T Consensus         1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~~~~CP~C   39 (39)
T PF13923_consen    1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEKNPKCPVC   39 (39)
T ss_dssp             ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHCTSB-TTT
T ss_pred             CCCCCCcccCcCEECCCCCchhHHHHHHHHHCcCCCcCC
Confidence            89999999999767899999999999988   5678876

>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]

Probab=98.55  E-value=1.2e-08  Score=90.09  Aligned_cols=68  Identities=28%  Similarity=0.582  Sum_probs=52.7

Q ss_pred             ceeecCCCCeeeccCCCCCCcCceeeccCCceechhchhhc---CCCCCCCCCCCcc---ccchhHHHHhhccee
Q 038068           45 EALTITDQDIFDCPICFEPLTVPVFQCVNGHLACSDCCAKI---KRNCPTCSSPTVI---VRNWAIEKVIELVQV  113 (269)
Q Consensus        45 ~~~~~~~~~~l~C~iC~~~l~~Pv~~c~cgH~fC~~C~~~~---~~~Cp~C~~~~~~---~~~~~l~~~i~~l~v  113 (269)
                      ........+.|.|-||.++|..|+. ++|||+||+-||-..   ...||.|+.++..   ..|+.++++++++.+
T Consensus        14 ipslk~lD~lLRC~IC~eyf~ip~i-tpCsHtfCSlCIR~~L~~~p~CP~C~~~~~Es~Lr~n~il~Eiv~S~~~   87 (442)
T KOG0287|consen   14 IPSLKTLDDLLRCGICFEYFNIPMI-TPCSHTFCSLCIRKFLSYKPQCPTCCVTVTESDLRNNRILDEIVKSLNF   87 (442)
T ss_pred             CchhhhhHHHHHHhHHHHHhcCcee-ccccchHHHHHHHHHhccCCCCCceecccchhhhhhhhHHHHHHHHHHH
Confidence            3333344478999999999999995 699999999999876   6789999988763   346667777766543

>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A

Probab=98.53  E-value=5.4e-08  Score=63.69  Aligned_cols=43  Identities=40%  Similarity=0.932  Sum_probs=36.6

Q ss_pred             eeeccCCCCCCcCceeeccCCce-echhchhhc---CCCCCCCCCCCc
Q 038068           54 IFDCPICFEPLTVPVFQCVNGHL-ACSDCCAKI---KRNCPTCSSPTV   97 (269)
Q Consensus        54 ~l~C~iC~~~l~~Pv~~c~cgH~-fC~~C~~~~---~~~Cp~C~~~~~   97 (269)
                      +..|+||++...++++. +|||. ||..|..++   ...||+||.++.
T Consensus         2 ~~~C~iC~~~~~~~~~~-pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~   48 (50)
T PF13920_consen    2 DEECPICFENPRDVVLL-PCGHLCFCEECAERLLKRKKKCPICRQPIE   48 (50)
T ss_dssp             HSB-TTTSSSBSSEEEE-TTCEEEEEHHHHHHHHHTTSBBTTTTBB-S
T ss_pred             cCCCccCCccCCceEEe-CCCChHHHHHHhHHhcccCCCCCcCChhhc
Confidence            56899999999998864 99999 999999998   578999999875

...

>PF02176 zf-TRAF: TRAF-type zinc finger; PDB: 2EOD_A 2YUC_A 3HCU_A 3HCS_B 3HCT_A

Probab=98.51  E-value=7e-08  Score=65.51  Aligned_cols=53  Identities=23%  Similarity=0.516  Sum_probs=40.5

Q ss_pred             hhcceecccCCCCCccccccccchhhhhc-cCCCeeeeCCC--CCCCCccChhHHhhh
Q 038068          108 IELVQVNCKNAEYGCQQKMSFSKKRGHEK-TCQHSPLPCPL--SDCSFLGCSSQFVRH  162 (269)
Q Consensus       108 i~~l~v~C~~~~~GC~~~~~~~~~~~He~-~C~~~p~~Cp~--~~C~~~g~~~~l~~H  162 (269)
                      .....|.|||.  ||...+...++.+|++ +|+++++.||+  .||++.+.+.+|.+|
T Consensus         5 C~~~~v~C~~~--cc~~~i~r~~l~~H~~~~C~~~~v~C~~~~~GC~~~~~~~~l~~H   60 (60)
T PF02176_consen    5 CPFRPVPCPNG--CCNEMIPRKELDDHLENECPKRPVPCPYSPYGCKERVPREDLEEH   60 (60)
T ss_dssp             STTSEEE-TT----S-BEEECCCHHHHHHTTSTTSEEE-SS----S--EEEHHHHHHC
T ss_pred             CCCCEeeCCCC--CcccceeHHHHHHHHHccCCCCcEECCCCCCCCCCccchhHHhCC
Confidence            56678999986  7788899999999988 99999999999  499999999999988

>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.49  E-value=5.1e-08  Score=84.65  Aligned_cols=47  Identities=26%  Similarity=0.594  Sum_probs=41.2

Q ss_pred             CCeeeccCCCCCCcCceeeccCCceechhchhhc---CCCCCCCCCCCccc
Q 038068           52 QDIFDCPICFEPLTVPVFQCVNGHLACSDCCAKI---KRNCPTCSSPTVIV   99 (269)
Q Consensus        52 ~~~l~C~iC~~~l~~Pv~~c~cgH~fC~~C~~~~---~~~Cp~C~~~~~~~   99 (269)
                      .....|.+|++...+|- .++|||+||+.|+..|   +..||.||..+...
T Consensus       237 ~a~~kC~LCLe~~~~pS-aTpCGHiFCWsCI~~w~~ek~eCPlCR~~~~ps  286 (293)
T KOG0317|consen  237 EATRKCSLCLENRSNPS-ATPCGHIFCWSCILEWCSEKAECPLCREKFQPS  286 (293)
T ss_pred             CCCCceEEEecCCCCCC-cCcCcchHHHHHHHHHHccccCCCcccccCCCc
Confidence            36689999999999997 6799999999999999   56899999987643

>TIGR00599 rad18 DNA repair protein rad18

Probab=98.47  E-value=7e-08  Score=88.86  Aligned_cols=59  Identities=27%  Similarity=0.654  Sum_probs=48.0

Q ss_pred             CeeeccCCCCCCcCceeeccCCceechhchhhc---CCCCCCCCCCCcc---ccchhHHHHhhcce
Q 038068           53 DIFDCPICFEPLTVPVFQCVNGHLACSDCCAKI---KRNCPTCSSPTVI---VRNWAIEKVIELVQ  112 (269)
Q Consensus        53 ~~l~C~iC~~~l~~Pv~~c~cgH~fC~~C~~~~---~~~Cp~C~~~~~~---~~~~~l~~~i~~l~  112 (269)
                      +.+.|+||.+++..|+. .+|||.||..|+..+   ...||.|+..+..   .+|..++++++.++
T Consensus        25 ~~l~C~IC~d~~~~Pvi-tpCgH~FCs~CI~~~l~~~~~CP~Cr~~~~~~~Lr~N~~L~~iVe~~~   89 (397)
T TIGR00599        25 TSLRCHICKDFFDVPVL-TSCSHTFCSLCIRRCLSNQPKCPLCRAEDQESKLRSNWLVSEIVESFK   89 (397)
T ss_pred             cccCCCcCchhhhCccC-CCCCCchhHHHHHHHHhCCCCCCCCCCccccccCccchHHHHHHHHHH
Confidence            67999999999999984 699999999999977   4579999998753   35666666666543

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A

Probab=98.39  E-value=1.3e-07  Score=60.15  Aligned_cols=38  Identities=32%  Similarity=0.829  Sum_probs=31.8

Q ss_pred             eccCCCCCCc--CceeeccCCceechhchhhc---CCCCCCCC
Q 038068           56 DCPICFEPLT--VPVFQCVNGHLACSDCCAKI---KRNCPTCS   93 (269)
Q Consensus        56 ~C~iC~~~l~--~Pv~~c~cgH~fC~~C~~~~---~~~Cp~C~   93 (269)
                      .|+||++.+.  ..++..+|||.||..|+..|   +..||.||
T Consensus         2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~~~CP~CR   44 (44)
T PF13639_consen    2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRNNSCPVCR   44 (44)
T ss_dssp             CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred             CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhCCcCCccC
Confidence            5999999984  45667789999999999999   67899996

...

>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.35  E-value=3.3e-07  Score=57.21  Aligned_cols=36  Identities=47%  Similarity=1.066  Sum_probs=31.4

Q ss_pred             ccCCCCCCcCceeeccCCceechhchhhc-----CCCCCCC
Q 038068           57 CPICFEPLTVPVFQCVNGHLACSDCCAKI-----KRNCPTC   92 (269)
Q Consensus        57 C~iC~~~l~~Pv~~c~cgH~fC~~C~~~~-----~~~Cp~C   92 (269)
                      |+||.+++..|++..+|||.||..|+.++     ...||.|
T Consensus         1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C   41 (41)
T PF00097_consen    1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLENSGSVKCPLC   41 (41)
T ss_dssp             ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred             CCcCCccccCCCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence            89999999999966799999999999987     3468776

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....

>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis

Probab=98.31  E-value=4.7e-07  Score=64.11  Aligned_cols=59  Identities=27%  Similarity=0.314  Sum_probs=44.9

Q ss_pred             CCeeeccCCCCCCcCceeeccCCceechhchhhc----CCCCCCCCCCCcc---ccchhHHHHhhcc
Q 038068           52 QDIFDCPICFEPLTVPVFQCVNGHLACSDCCAKI----KRNCPTCSSPTVI---VRNWAIEKVIELV  111 (269)
Q Consensus        52 ~~~l~C~iC~~~l~~Pv~~c~cgH~fC~~C~~~~----~~~Cp~C~~~~~~---~~~~~l~~~i~~l  111 (269)
                      |+.|.|||+.+++.+||. .++||+|+..++.+|    ...||.++.++..   ..|..|.+.|+.+
T Consensus         2 P~~f~CpIt~~lM~dPVi-~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~~l~pn~~Lk~~I~~~   67 (73)
T PF04564_consen    2 PDEFLCPITGELMRDPVI-LPSGHTYERSAIERWLEQNGGTDPFTRQPLSESDLIPNRALKSAIEEW   67 (73)
T ss_dssp             SGGGB-TTTSSB-SSEEE-ETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGGGSEE-HHHHHHHHHH
T ss_pred             CcccCCcCcCcHhhCcee-CCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCcccceECHHHHHHHHHH
Confidence            578999999999999995 599999999999998    3679999998863   4788888877765

Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....

>PHA02929 N1R/p28-like protein; Provisional

Probab=98.27  E-value=5e-07  Score=77.91  Aligned_cols=46  Identities=26%  Similarity=0.607  Sum_probs=37.7

Q ss_pred             CeeeccCCCCCCcCc-------eeeccCCceechhchhhc---CCCCCCCCCCCcc
Q 038068           53 DIFDCPICFEPLTVP-------VFQCVNGHLACSDCCAKI---KRNCPTCSSPTVI   98 (269)
Q Consensus        53 ~~l~C~iC~~~l~~P-------v~~c~cgH~fC~~C~~~~---~~~Cp~C~~~~~~   98 (269)
                      +...|+||++.+..+       ....+|||.||..|+.+|   ...||.||.++..
T Consensus       173 ~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR~~~~~  228 (238)
T PHA02929        173 KDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTPFIS  228 (238)
T ss_pred             CCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCCCCCCCCCEeeE
Confidence            567999999987653       124689999999999999   5789999998763

>PF14634 zf-RING_5: zinc-RING finger domain

Probab=98.22  E-value=7.1e-07  Score=56.76  Aligned_cols=39  Identities=36%  Similarity=0.824  Sum_probs=31.9

Q ss_pred             eccCCCCCC--cCceeeccCCceechhchhhcC---CCCCCCCC
Q 038068           56 DCPICFEPL--TVPVFQCVNGHLACSDCCAKIK---RNCPTCSS   94 (269)
Q Consensus        56 ~C~iC~~~l--~~Pv~~c~cgH~fC~~C~~~~~---~~Cp~C~~   94 (269)
                      .|++|.+.+  ..+.+..+|||+||..|+..+.   ..||+|++
T Consensus         1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~~~~~~CP~C~k   44 (44)
T PF14634_consen    1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLKGKSVKCPICRK   44 (44)
T ss_pred             CCcCcCccccCCCCeEEcccCCHHHHHHHHhhcCCCCCCcCCCC
Confidence            489999998  3344567999999999999884   68999974

>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

Probab=98.15  E-value=1.5e-06  Score=54.57  Aligned_cols=40  Identities=43%  Similarity=1.035  Sum_probs=33.7

Q ss_pred             eccCCCCCCcCceeeccCCceechhchhhc----CCCCCCCCCC
Q 038068           56 DCPICFEPLTVPVFQCVNGHLACSDCCAKI----KRNCPTCSSP   95 (269)
Q Consensus        56 ~C~iC~~~l~~Pv~~c~cgH~fC~~C~~~~----~~~Cp~C~~~   95 (269)
                      .|+||.+.+..++...+|||.||..|+..|    ...||.|+..
T Consensus         1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~   44 (45)
T cd00162           1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTP   44 (45)
T ss_pred             CCCcCchhhhCceEecCCCChhcHHHHHHHHHhCcCCCCCCCCc
Confidence            489999999888766569999999999877    3579999875

>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]

Probab=98.03  E-value=2.4e-06  Score=74.29  Aligned_cols=44  Identities=27%  Similarity=0.707  Sum_probs=39.2

Q ss_pred             CeeeccCCCCCCcCceeeccCCceechhchhhc---CCCCCCCCCCCc
Q 038068           53 DIFDCPICFEPLTVPVFQCVNGHLACSDCCAKI---KRNCPTCSSPTV   97 (269)
Q Consensus        53 ~~l~C~iC~~~l~~Pv~~c~cgH~fC~~C~~~~---~~~Cp~C~~~~~   97 (269)
                      ..+.|-||.+.++.|+ .++|||.||+-||...   +..||.|+.+..
T Consensus        24 s~lrC~IC~~~i~ip~-~TtCgHtFCslCIR~hL~~qp~CP~Cr~~~~   70 (391)
T COG5432          24 SMLRCRICDCRISIPC-ETTCGHTFCSLCIRRHLGTQPFCPVCREDPC   70 (391)
T ss_pred             hHHHhhhhhheeecce-ecccccchhHHHHHHHhcCCCCCccccccHH
Confidence            5689999999999999 5799999999999876   678999998764

>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A

Probab=97.94  E-value=3.9e-06  Score=52.92  Aligned_cols=27  Identities=44%  Similarity=1.069  Sum_probs=18.4

Q ss_pred             ccCCCCCCcC----ceeeccCCceechhchhhc
Q 038068           57 CPICFEPLTV----PVFQCVNGHLACSDCCAKI   85 (269)
Q Consensus        57 C~iC~~~l~~----Pv~~c~cgH~fC~~C~~~~   85 (269)
                      ||||.+ +..    |+.+ +|||+||..|+.++
T Consensus         1 CpIc~e-~~~~~n~P~~L-~CGH~~c~~cl~~l   31 (43)
T PF13445_consen    1 CPICKE-FSTEENPPMVL-PCGHVFCKDCLQKL   31 (43)
T ss_dssp             -TTT-----TTSS-EEE--SSS-EEEHHHHHHH
T ss_pred             CCcccc-ccCCCCCCEEE-eCccHHHHHHHHHH
Confidence            899999 877    8865 79999999999987

>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.85  E-value=6e-06  Score=71.09  Aligned_cols=45  Identities=29%  Similarity=0.611  Sum_probs=38.8

Q ss_pred             CCeeeccCCCCCCcCceeeccCCceechhchhh-c----CCCCCCCCCCCc
Q 038068           52 QDIFDCPICFEPLTVPVFQCVNGHLACSDCCAK-I----KRNCPTCSSPTV   97 (269)
Q Consensus        52 ~~~l~C~iC~~~l~~Pv~~c~cgH~fC~~C~~~-~----~~~Cp~C~~~~~   97 (269)
                      ..++.|++|.+....|.. ++|||+||..|+.. |    ...||.||+...
T Consensus       213 ~~d~kC~lC~e~~~~ps~-t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~  262 (271)
T COG5574         213 LADYKCFLCLEEPEVPSC-TPCGHLFCLSCLLISWTKKKYEFCPLCRAKVY  262 (271)
T ss_pred             ccccceeeeecccCCccc-ccccchhhHHHHHHHHHhhccccCchhhhhcc
Confidence            478999999999999984 69999999999988 6    245999998654

>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.84  E-value=6.5e-06  Score=76.85  Aligned_cols=44  Identities=39%  Similarity=0.902  Sum_probs=37.7

Q ss_pred             eeeccCCCCCCcCceeeccCCceechhchhhc--------CCCCCCCCCCCcc
Q 038068           54 IFDCPICFEPLTVPVFQCVNGHLACSDCCAKI--------KRNCPTCSSPTVI   98 (269)
Q Consensus        54 ~l~C~iC~~~l~~Pv~~c~cgH~fC~~C~~~~--------~~~Cp~C~~~~~~   98 (269)
                      ...||||+++..-|+. +.|||+||..|+.+.        -..||+|+..+..
T Consensus       186 ~~~CPICL~~~~~p~~-t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~  237 (513)
T KOG2164|consen  186 DMQCPICLEPPSVPVR-TNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITL  237 (513)
T ss_pred             CCcCCcccCCCCcccc-cccCceeeHHHHHHHHhhhcccCCccCCchhhhccc
Confidence            7899999999999985 589999999999874        2579999987764

>PHA02926 zinc finger-like protein; Provisional

Probab=97.80  E-value=7.2e-06  Score=69.05  Aligned_cols=45  Identities=24%  Similarity=0.529  Sum_probs=35.8

Q ss_pred             CeeeccCCCCCCcC---------ceeeccCCceechhchhhcC---------CCCCCCCCCCcc
Q 038068           53 DIFDCPICFEPLTV---------PVFQCVNGHLACSDCCAKIK---------RNCPTCSSPTVI   98 (269)
Q Consensus        53 ~~l~C~iC~~~l~~---------Pv~~c~cgH~fC~~C~~~~~---------~~Cp~C~~~~~~   98 (269)
                      ++..|+||++....         ++ .-+|+|.||..|+.+|.         ..||.||..+..
T Consensus       169 kE~eCgICmE~I~eK~~~~eRrFGI-L~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~  231 (242)
T PHA02926        169 KEKECGICYEVVYSKRLENDRYFGL-LDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFRN  231 (242)
T ss_pred             CCCCCccCccccccccccccccccc-cCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceeee
Confidence            67899999998643         34 35899999999999992         239999998764

>smart00184 RING Ring finger

Probab=97.74  E-value=1.8e-05  Score=47.74  Aligned_cols=35  Identities=46%  Similarity=1.051  Sum_probs=29.3

Q ss_pred             ccCCCCCCcCceeeccCCceechhchhhc----CCCCCCC
Q 038068           57 CPICFEPLTVPVFQCVNGHLACSDCCAKI----KRNCPTC   92 (269)
Q Consensus        57 C~iC~~~l~~Pv~~c~cgH~fC~~C~~~~----~~~Cp~C   92 (269)
                      |+||.+....++. .+|||.||..|+..|    ...||.|
T Consensus         1 C~iC~~~~~~~~~-~~C~H~~c~~C~~~~~~~~~~~CP~C   39 (39)
T smart00184        1 CPICLEELKDPVV-LPCGHTFCRSCIRKWLKSGNNTCPIC   39 (39)
T ss_pred             CCcCccCCCCcEE-ecCCChHHHHHHHHHHHhCcCCCCCC
Confidence            7899999888875 599999999999877    3568876

E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)

>PF02176 zf-TRAF: TRAF-type zinc finger; PDB: 2EOD_A 2YUC_A 3HCU_A 3HCS_B 3HCT_A

Probab=97.61  E-value=2.8e-05  Score=52.59  Aligned_cols=43  Identities=28%  Similarity=0.591  Sum_probs=35.0

Q ss_pred             hhccCCCeeeeCCCCCCCCccChhHHhhhhhhhCCCCccceee
Q 038068          134 HEKTCQHSPLPCPLSDCSFLGCSSQFVRHFMAKHNISAVPFKY  176 (269)
Q Consensus       134 He~~C~~~p~~Cp~~~C~~~g~~~~l~~Hl~~~H~~~~~~~~~  176 (269)
                      |+++|+++++.||+.+|.....+.+|.+|+...+....+.+.|
T Consensus         1 H~~~C~~~~v~C~~~cc~~~i~r~~l~~H~~~~C~~~~v~C~~   43 (60)
T PF02176_consen    1 HEEECPFRPVPCPNGCCNEMIPRKELDDHLENECPKRPVPCPY   43 (60)
T ss_dssp             HHTTSTTSEEE-TT--S-BEEECCCHHHHHHTTSTTSEEE-SS
T ss_pred             CcccCCCCEeeCCCCCcccceeHHHHHHHHHccCCCCcEECCC
Confidence            8889999999999866777789999999999999998888887

>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1

Probab=97.58  E-value=4.3e-05  Score=68.01  Aligned_cols=45  Identities=29%  Similarity=0.665  Sum_probs=34.6

Q ss_pred             CeeeccCCCC--CCcCce--eeccCCceechhchhhc----CCCCCCCCCCCc
Q 038068           53 DIFDCPICFE--PLTVPV--FQCVNGHLACSDCCAKI----KRNCPTCSSPTV   97 (269)
Q Consensus        53 ~~l~C~iC~~--~l~~Pv--~~c~cgH~fC~~C~~~~----~~~Cp~C~~~~~   97 (269)
                      ++..||+|..  ++.+-+  +.-+|||.||.+|+..+    ...||.|+.++.
T Consensus         2 d~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~lr   54 (309)
T TIGR00570         2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGSGSCPECDTPLR   54 (309)
T ss_pred             CCCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCCCCCCCCCCccc
Confidence            4578999999  555542  22379999999999985    457999988764

All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.46  E-value=6.7e-06  Score=73.42  Aligned_cols=59  Identities=27%  Similarity=0.442  Sum_probs=46.6

Q ss_pred             CeeeccCCCCCCcCceeeccCCceechhchhhc----CCCCCCCCCCCccc----cchhHHHHhhcc
Q 038068           53 DIFDCPICFEPLTVPVFQCVNGHLACSDCCAKI----KRNCPTCSSPTVIV----RNWAIEKVIELV  111 (269)
Q Consensus        53 ~~l~C~iC~~~l~~Pv~~c~cgH~fC~~C~~~~----~~~Cp~C~~~~~~~----~~~~l~~~i~~l  111 (269)
                      ..+.|+||+++|+..+..-.|+|.||..||...    .+.||.||+.+...    .+.+...+|..+
T Consensus        42 ~~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~SkrsLr~Dp~fdaLis~i  108 (381)
T KOG0311|consen   42 IQVICPICLSLLKKTMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSKRSLRIDPNFDALISKI  108 (381)
T ss_pred             hhhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhccccccCCCCccHHHHHHHH
Confidence            679999999999999865569999999999875    57899999987642    344555565554

>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.42  E-value=0.00011  Score=51.94  Aligned_cols=38  Identities=34%  Similarity=0.809  Sum_probs=30.0

Q ss_pred             eccCCCCCCcC------------ceeeccCCceechhchhhc---CCCCCCCC
Q 038068           56 DCPICFEPLTV------------PVFQCVNGHLACSDCCAKI---KRNCPTCS   93 (269)
Q Consensus        56 ~C~iC~~~l~~------------Pv~~c~cgH~fC~~C~~~~---~~~Cp~C~   93 (269)
                      .|.||++.+.+            ++....|||.|-..|+.+|   ...||+||
T Consensus        21 ~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR   73 (73)
T PF12678_consen   21 NCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNNTCPLCR   73 (73)
T ss_dssp             BETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred             cccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCCcCCCCC
Confidence            49999999933            3444579999999999999   56899997

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....

>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.37  E-value=4.6e-05  Score=67.17  Aligned_cols=62  Identities=27%  Similarity=0.606  Sum_probs=46.8

Q ss_pred             CeeeccCCCCCCcCceeeccCCceechhchhhcC---CCCCCCCCCCc-cccchhHHHHhhcceecc
Q 038068           53 DIFDCPICFEPLTVPVFQCVNGHLACSDCCAKIK---RNCPTCSSPTV-IVRNWAIEKVIELVQVNC  115 (269)
Q Consensus        53 ~~l~C~iC~~~l~~Pv~~c~cgH~fC~~C~~~~~---~~Cp~C~~~~~-~~~~~~l~~~i~~l~v~C  115 (269)
                      +.+.|+||++.+..|. ..+|||.||..|+..+.   ..||.|+.... ..+|..+.+++..+....
T Consensus        12 ~~~~C~iC~~~~~~p~-~l~C~H~~c~~C~~~~~~~~~~Cp~cr~~~~~~~~n~~l~~~~~~~~~~~   77 (386)
T KOG2177|consen   12 EELTCPICLEYFREPV-LLPCGHNFCRACLTRSWEGPLSCPVCRPPSRNLRPNVLLANLVERLRQLR   77 (386)
T ss_pred             ccccChhhHHHhhcCc-cccccchHhHHHHHHhcCCCcCCcccCCchhccCccHHHHHHHHHHHhcC
Confidence            7899999999999995 55899999999999873   68999994111 124566666666655443

>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]

Probab=97.33  E-value=5.5e-05  Score=73.88  Aligned_cols=45  Identities=24%  Similarity=0.717  Sum_probs=40.0

Q ss_pred             CeeeccCCCCCCcCceeeccCCceechhchhhc----CCCCCCCCCCCcc
Q 038068           53 DIFDCPICFEPLTVPVFQCVNGHLACSDCCAKI----KRNCPTCSSPTVI   98 (269)
Q Consensus        53 ~~l~C~iC~~~l~~Pv~~c~cgH~fC~~C~~~~----~~~Cp~C~~~~~~   98 (269)
                      ..|.||+|..-.++.|. ..|||.||..|+...    ..+||.|..+|+.
T Consensus       642 ~~LkCs~Cn~R~Kd~vI-~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFga  690 (698)
T KOG0978|consen  642 ELLKCSVCNTRWKDAVI-TKCGHVFCEECVQTRYETRQRKCPKCNAAFGA  690 (698)
T ss_pred             hceeCCCccCchhhHHH-HhcchHHHHHHHHHHHHHhcCCCCCCCCCCCc
Confidence            68999999998999884 699999999999876    5789999999874

>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function

Probab=97.23  E-value=0.00067  Score=54.35  Aligned_cols=27  Identities=30%  Similarity=0.571  Sum_probs=23.5

Q ss_pred             eeCCCCCCCCccChhHHhhhhhhhCCC
Q 038068          143 LPCPLSDCSFLGCSSQFVRHFMAKHNI  169 (269)
Q Consensus       143 ~~Cp~~~C~~~g~~~~l~~Hl~~~H~~  169 (269)
                      =.|+..+|.|.|.+.+|..|.+.+|+.
T Consensus       108 RsC~~e~C~F~GtY~eLrKHar~~HP~  134 (162)
T PF07800_consen  108 RSCSQESCSFSGTYSELRKHARSEHPS  134 (162)
T ss_pred             ccCcccccccccCHHHHHHHHHhhCCC
Confidence            356666999999999999999999975

The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.

>PLN03086 PRLI-interacting factor K; Provisional

Probab=96.93  E-value=0.00095  Score=64.37  Aligned_cols=117  Identities=16%  Similarity=0.337  Sum_probs=69.8

Q ss_pred             CCeeeccCCCCCCcCceee-----ccCCceech--hchhhc-------CCCCCCCCCCCccccchhHHHHhhcceecccC
Q 038068           52 QDIFDCPICFEPLTVPVFQ-----CVNGHLACS--DCCAKI-------KRNCPTCSSPTVIVRNWAIEKVIELVQVNCKN  117 (269)
Q Consensus        52 ~~~l~C~iC~~~l~~Pv~~-----c~cgH~fC~--~C~~~~-------~~~Cp~C~~~~~~~~~~~l~~~i~~l~v~C~~  117 (269)
                      .+...|+-|......--++     |.---+.|.  .|-..+       ...|+.|...+....-....+.. ..++.|+ 
T Consensus       405 ~~~V~C~NC~~~i~l~~l~lHe~~C~r~~V~Cp~~~Cg~v~~r~el~~H~~C~~Cgk~f~~s~LekH~~~~-Hkpv~Cp-  482 (567)
T PLN03086        405 VDTVECRNCKHYIPSRSIALHEAYCSRHNVVCPHDGCGIVLRVEEAKNHVHCEKCGQAFQQGEMEKHMKVF-HEPLQCP-  482 (567)
T ss_pred             CCeEECCCCCCccchhHHHHHHhhCCCcceeCCcccccceeeccccccCccCCCCCCccchHHHHHHHHhc-CCCccCC-
Confidence            4667899998765433111     211112232  132222       24699998776522112222222 4667886 


Q ss_pred             CCCCccccccccchhhhhc-cCCCeeeeCCCCCCCCccCh-----------hHHhhhhhhhCCCCccceeec
Q 038068          118 AEYGCQQKMSFSKKRGHEK-TCQHSPLPCPLSDCSFLGCS-----------SQFVRHFMAKHNISAVPFKYN  177 (269)
Q Consensus       118 ~~~GC~~~~~~~~~~~He~-~C~~~p~~Cp~~~C~~~g~~-----------~~l~~Hl~~~H~~~~~~~~~~  177 (269)
                          |...+...++..|.. .|+.+++.|++  |+..+..           ..|..|... |....+.|..|
T Consensus       483 ----Cg~~~~R~~L~~H~~thCp~Kpi~C~f--C~~~v~~g~~~~d~~d~~s~Lt~HE~~-CG~rt~~C~~C  547 (567)
T PLN03086        483 ----CGVVLEKEQMVQHQASTCPLRLITCRF--CGDMVQAGGSAMDVRDRLRGMSEHESI-CGSRTAPCDSC  547 (567)
T ss_pred             ----CCCCcchhHHHhhhhccCCCCceeCCC--CCCccccCccccchhhhhhhHHHHHHh-cCCcceEcccc
Confidence                777777888889965 69999999996  9887642           378888776 44555566544

>PLN03086 PRLI-interacting factor K; Provisional

Probab=96.88  E-value=0.0012  Score=63.72  Aligned_cols=53  Identities=25%  Similarity=0.519  Sum_probs=32.5

Q ss_pred             ccccccccchhhhhccCCCeeeeCCCCCCCCccChhHHhhhhhhhCCCCccceeecc
Q 038068          122 CQQKMSFSKKRGHEKTCQHSPLPCPLSDCSFLGCSSQFVRHFMAKHNISAVPFKYNS  178 (269)
Q Consensus       122 C~~~~~~~~~~~He~~C~~~p~~Cp~~~C~~~g~~~~l~~Hl~~~H~~~~~~~~~~~  178 (269)
                      |...+...+++.|.+.| +.++.||   |+....+.+|..|....++...+.|.||.
T Consensus       459 Cgk~f~~s~LekH~~~~-Hkpv~Cp---Cg~~~~R~~L~~H~~thCp~Kpi~C~fC~  511 (567)
T PLN03086        459 CGQAFQQGEMEKHMKVF-HEPLQCP---CGVVLEKEQMVQHQASTCPLRLITCRFCG  511 (567)
T ss_pred             CCCccchHHHHHHHHhc-CCCccCC---CCCCcchhHHHhhhhccCCCCceeCCCCC
Confidence            44444455555565555 4666666   66656666777776666666666666664

>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]

Probab=96.73  E-value=0.00051  Score=56.86  Aligned_cols=56  Identities=27%  Similarity=0.495  Sum_probs=42.5

Q ss_pred             eeeccCCCCCCcCceeeccCCceechhchhhc---CCCCCCCCCCCc--cccchhHHHHhhc
Q 038068           54 IFDCPICFEPLTVPVFQCVNGHLACSDCCAKI---KRNCPTCSSPTV--IVRNWAIEKVIEL  110 (269)
Q Consensus        54 ~l~C~iC~~~l~~Pv~~c~cgH~fC~~C~~~~---~~~Cp~C~~~~~--~~~~~~l~~~i~~  110 (269)
                      -|.|-||..-+..||. +.|||.||+.|..+-   ...|-.|.....  ......+++++..
T Consensus       196 PF~C~iCKkdy~spvv-t~CGH~FC~~Cai~~y~kg~~C~~Cgk~t~G~f~V~~d~~kmL~~  256 (259)
T COG5152         196 PFLCGICKKDYESPVV-TECGHSFCSLCAIRKYQKGDECGVCGKATYGRFWVVSDLQKMLNK  256 (259)
T ss_pred             ceeehhchhhccchhh-hhcchhHHHHHHHHHhccCCcceecchhhccceeHHhhHHHHHhh
Confidence            4789999999999995 699999999997754   568999987653  1233445666554

>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C

Probab=96.66  E-value=0.00095  Score=44.75  Aligned_cols=33  Identities=24%  Similarity=0.397  Sum_probs=24.1

Q ss_pred             CeeeccCCCCCCcCceeeccCCceechhchhhc
Q 038068           53 DIFDCPICFEPLTVPVFQCVNGHLACSDCCAKI   85 (269)
Q Consensus        53 ~~l~C~iC~~~l~~Pv~~c~cgH~fC~~C~~~~   85 (269)
                      -.+.|||...+|.+||....|||+|....+..+
T Consensus        10 ~~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~   42 (57)
T PF11789_consen   10 ISLKCPITLQPFEDPVKSKKCGHTFEKEAILQY   42 (57)
T ss_dssp             --SB-TTTSSB-SSEEEESSS--EEEHHHHHHH
T ss_pred             eccCCCCcCChhhCCcCcCCCCCeecHHHHHHH
Confidence            568999999999999976689999998888776

>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.59  E-value=0.0017  Score=56.40  Aligned_cols=45  Identities=33%  Similarity=0.697  Sum_probs=37.8

Q ss_pred             CeeeccCCCCCCcCceeeccCCceechhchhhc-----CCCCCCCCCCCc
Q 038068           53 DIFDCPICFEPLTVPVFQCVNGHLACSDCCAKI-----KRNCPTCSSPTV   97 (269)
Q Consensus        53 ~~l~C~iC~~~l~~Pv~~c~cgH~fC~~C~~~~-----~~~Cp~C~~~~~   97 (269)
                      ..-+||+|.+....|...-+|||++|-.|+...     +..||.|..+..
T Consensus       238 ~~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~  287 (298)
T KOG2879|consen  238 SDTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE  287 (298)
T ss_pred             CCceeeccCCCCCCCeeeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence            557999999999999866569999999999864     368999987653

>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.50  E-value=0.0017  Score=57.00  Aligned_cols=46  Identities=35%  Similarity=0.574  Sum_probs=38.4

Q ss_pred             eeccCCCCCCcCceeeccCCceechhchhhc---CCCCCCCCCCCccccc
Q 038068           55 FDCPICFEPLTVPVFQCVNGHLACSDCCAKI---KRNCPTCSSPTVIVRN  101 (269)
Q Consensus        55 l~C~iC~~~l~~Pv~~c~cgH~fC~~C~~~~---~~~Cp~C~~~~~~~~~  101 (269)
                      +.|-||..++..||. +.|||.||..|...-   ...|.+|.+++...-|
T Consensus       242 f~c~icr~~f~~pVv-t~c~h~fc~~ca~~~~qk~~~c~vC~~~t~g~~~  290 (313)
T KOG1813|consen  242 FKCFICRKYFYRPVV-TKCGHYFCEVCALKPYQKGEKCYVCSQQTHGSFN  290 (313)
T ss_pred             ccccccccccccchh-hcCCceeehhhhccccccCCcceecccccccccc
Confidence            569999999999995 699999999997765   4689999988764433

>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.50  E-value=0.00093  Score=61.96  Aligned_cols=45  Identities=31%  Similarity=0.750  Sum_probs=39.8

Q ss_pred             CCeeeccCCCCCCcCceeeccCCceechhchhhc---CCCCCCCCCCCc
Q 038068           52 QDIFDCPICFEPLTVPVFQCVNGHLACSDCCAKI---KRNCPTCSSPTV   97 (269)
Q Consensus        52 ~~~l~C~iC~~~l~~Pv~~c~cgH~fC~~C~~~~---~~~Cp~C~~~~~   97 (269)
                      ...|.|.||...|.+|+. ++|||.||..|+.+.   ...||.|+.++.
T Consensus        82 ~sef~c~vc~~~l~~pv~-tpcghs~c~~Cl~r~ld~~~~cp~Cr~~l~  129 (398)
T KOG4159|consen   82 RSEFECCVCSRALYPPVV-TPCGHSFCLECLDRSLDQETECPLCRDELV  129 (398)
T ss_pred             cchhhhhhhHhhcCCCcc-ccccccccHHHHHHHhccCCCCcccccccc
Confidence            478999999999999996 599999999998876   568999998775

>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]

Probab=96.43  E-value=0.00066  Score=60.46  Aligned_cols=45  Identities=24%  Similarity=0.433  Sum_probs=39.5

Q ss_pred             CeeeccCCCCCCcCceeeccCCceechhchhhc---CCCCCCCCCCCc
Q 038068           53 DIFDCPICFEPLTVPVFQCVNGHLACSDCCAKI---KRNCPTCSSPTV   97 (269)
Q Consensus        53 ~~l~C~iC~~~l~~Pv~~c~cgH~fC~~C~~~~---~~~Cp~C~~~~~   97 (269)
                      ....|.+|..+|.++-....|-|+||.+|+.+.   ...||.|...+.
T Consensus        14 ~~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~~~~CP~C~i~ih   61 (331)
T KOG2660|consen   14 PHITCRLCGGYLIDATTITECLHTFCKSCIVKYLEESKYCPTCDIVIH   61 (331)
T ss_pred             cceehhhccceeecchhHHHHHHHHHHHHHHHHHHHhccCCccceecc
Confidence            567899999999999877789999999999876   678999987664

>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger

Probab=96.37  E-value=0.0023  Score=46.22  Aligned_cols=43  Identities=30%  Similarity=0.447  Sum_probs=33.6

Q ss_pred             eeccCCCCCCcC-ceeeccCCceechhchhhc------CCCCCCCCCCCc
Q 038068           55 FDCPICFEPLTV-PVFQCVNGHLACSDCCAKI------KRNCPTCSSPTV   97 (269)
Q Consensus        55 l~C~iC~~~l~~-Pv~~c~cgH~fC~~C~~~~------~~~Cp~C~~~~~   97 (269)
                      -.||.|..+-.+ |+....|+|.|=..||.+|      +..||+||++..
T Consensus        33 g~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~   82 (85)
T PF12861_consen   33 GCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWK   82 (85)
T ss_pred             cCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeee
Confidence            346777766543 6656789999999999998      368999998764

>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.34  E-value=0.0026  Score=57.39  Aligned_cols=44  Identities=32%  Similarity=0.689  Sum_probs=38.2

Q ss_pred             CeeeccCCCCCCcCceeeccCCce-echhchhhc---CCCCCCCCCCCc
Q 038068           53 DIFDCPICFEPLTVPVFQCVNGHL-ACSDCCAKI---KRNCPTCSSPTV   97 (269)
Q Consensus        53 ~~l~C~iC~~~l~~Pv~~c~cgH~-fC~~C~~~~---~~~Cp~C~~~~~   97 (269)
                      .--+|-||+.-.++-+.. +|.|+ .|+.|.+.+   .+.||+||+++.
T Consensus       289 ~gkeCVIClse~rdt~vL-PCRHLCLCs~Ca~~Lr~q~n~CPICRqpi~  336 (349)
T KOG4265|consen  289 SGKECVICLSESRDTVVL-PCRHLCLCSGCAKSLRYQTNNCPICRQPIE  336 (349)
T ss_pred             CCCeeEEEecCCcceEEe-cchhhehhHhHHHHHHHhhcCCCccccchH
Confidence            356899999999999865 99997 999999877   578999999875

>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.14  E-value=0.0032  Score=53.92  Aligned_cols=43  Identities=26%  Similarity=0.599  Sum_probs=35.0

Q ss_pred             eeccCCCCC-CcCceeeccCCceechhchhhcCC-CCCCCCCCCc
Q 038068           55 FDCPICFEP-LTVPVFQCVNGHLACSDCCAKIKR-NCPTCSSPTV   97 (269)
Q Consensus        55 l~C~iC~~~-l~~Pv~~c~cgH~fC~~C~~~~~~-~Cp~C~~~~~   97 (269)
                      ..|..|..- -.+|.+.+.|+|+||..|...... .||.|+.++.
T Consensus         4 VhCn~C~~~~~~~~f~LTaC~HvfC~~C~k~~~~~~C~lCkk~ir   48 (233)
T KOG4739|consen    4 VHCNKCFRFPSQDPFFLTACRHVFCEPCLKASSPDVCPLCKKSIR   48 (233)
T ss_pred             EEeccccccCCCCceeeeechhhhhhhhcccCCccccccccceee
Confidence            568877653 368889999999999999987744 8999999864

>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.90  E-value=0.0025  Score=61.96  Aligned_cols=43  Identities=30%  Similarity=0.573  Sum_probs=36.9

Q ss_pred             CeeeccCCCCCCcC-----ceeeccCCceechhchhhc---CCCCCCCCCCC
Q 038068           53 DIFDCPICFEPLTV-----PVFQCVNGHLACSDCCAKI---KRNCPTCSSPT   96 (269)
Q Consensus        53 ~~l~C~iC~~~l~~-----Pv~~c~cgH~fC~~C~~~~---~~~Cp~C~~~~   96 (269)
                      .+..|+||.+.+..     |.. -+|||.|+..|+..|   +..||.||..+
T Consensus       290 ~~~~C~IC~e~l~~~~~~~~~r-L~C~Hifh~~CL~~W~er~qtCP~CR~~~  340 (543)
T KOG0802|consen  290 SDELCIICLEELHSGHNITPKR-LPCGHIFHDSCLRSWFERQQTCPTCRTVL  340 (543)
T ss_pred             cCCeeeeechhhccccccccce-eecccchHHHHHHHHHHHhCcCCcchhhh
Confidence            46789999999988     554 499999999999999   67999999844

>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B

Probab=95.88  E-value=0.0044  Score=39.80  Aligned_cols=40  Identities=35%  Similarity=0.876  Sum_probs=20.0

Q ss_pred             ccCCCCCCcC---ceeeccCCceechhchhhc----CCCCCCCCCCC
Q 038068           57 CPICFEPLTV---PVFQCVNGHLACSDCCAKI----KRNCPTCSSPT   96 (269)
Q Consensus        57 C~iC~~~l~~---Pv~~c~cgH~fC~~C~~~~----~~~Cp~C~~~~   96 (269)
                      ||+|.+.+..   -++=|+||..+|..|+.++    ...||.||.+.
T Consensus         1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y   47 (48)
T PF14570_consen    1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREPY   47 (48)
T ss_dssp             -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred             CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence            6888887732   2345899999999998876    46899999864

>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.73  E-value=0.0012  Score=43.14  Aligned_cols=42  Identities=31%  Similarity=0.817  Sum_probs=33.8

Q ss_pred             eeccCCCCCCcCceeeccCCce-echhchhhc----CCCCCCCCCCCc
Q 038068           55 FDCPICFEPLTVPVFQCVNGHL-ACSDCCAKI----KRNCPTCSSPTV   97 (269)
Q Consensus        55 l~C~iC~~~l~~Pv~~c~cgH~-fC~~C~~~~----~~~Cp~C~~~~~   97 (269)
                      -+|.||.+-..+.|. =.|||. .|-.|-.++    ...||+||.++.
T Consensus         8 dECTICye~pvdsVl-YtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~   54 (62)
T KOG4172|consen    8 DECTICYEHPVDSVL-YTCGHMCMCYACGLRLKKALHGCCPICRAPIK   54 (62)
T ss_pred             cceeeeccCcchHHH-HHcchHHhHHHHHHHHHHccCCcCcchhhHHH
Confidence            589999998888874 379997 888886654    568999998764

>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.62  E-value=0.0068  Score=53.48  Aligned_cols=44  Identities=20%  Similarity=0.449  Sum_probs=37.0

Q ss_pred             eeeccCCCCCCc--CceeeccCCceechhchhhc----CCCCCCCCCCCc
Q 038068           54 IFDCPICFEPLT--VPVFQCVNGHLACSDCCAKI----KRNCPTCSSPTV   97 (269)
Q Consensus        54 ~l~C~iC~~~l~--~Pv~~c~cgH~fC~~C~~~~----~~~Cp~C~~~~~   97 (269)
                      -.+|.||++-+.  +.+...+|.|.|=..|+++|    +..||.||.++.
T Consensus       323 GveCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iP  372 (374)
T COG5540         323 GVECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIP  372 (374)
T ss_pred             CceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCC
Confidence            478999999774  44556799999999999999    689999998764

>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=95.34  E-value=0.0059  Score=53.74  Aligned_cols=40  Identities=33%  Similarity=0.818  Sum_probs=35.0

Q ss_pred             eeccCCCCCCcCceeeccCCceechhchhhc----CCCCCCCCC
Q 038068           55 FDCPICFEPLTVPVFQCVNGHLACSDCCAKI----KRNCPTCSS   94 (269)
Q Consensus        55 l~C~iC~~~l~~Pv~~c~cgH~fC~~C~~~~----~~~Cp~C~~   94 (269)
                      |.|+.|..+++.|+..-.|||.||..|+...    ...||.|..
T Consensus       275 LkCplc~~Llrnp~kT~cC~~~fc~eci~~al~dsDf~CpnC~r  318 (427)
T COG5222         275 LKCPLCHCLLRNPMKTPCCGHTFCDECIGTALLDSDFKCPNCSR  318 (427)
T ss_pred             ccCcchhhhhhCcccCccccchHHHHHHhhhhhhccccCCCccc
Confidence            8999999999999964359999999999864    578999976

>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.30  E-value=0.0074  Score=53.23  Aligned_cols=43  Identities=28%  Similarity=0.526  Sum_probs=37.0

Q ss_pred             eeeccCCCCCCcCceeeccCCceechhchhhc----CCCCCCCCCCCc
Q 038068           54 IFDCPICFEPLTVPVFQCVNGHLACSDCCAKI----KRNCPTCSSPTV   97 (269)
Q Consensus        54 ~l~C~iC~~~l~~Pv~~c~cgH~fC~~C~~~~----~~~Cp~C~~~~~   97 (269)
                      +-+|+||+.-..-|+. -.|+|.||--|++..    ...|++||.++.
T Consensus         7 ~~eC~IC~nt~n~Pv~-l~C~HkFCyiCiKGsy~ndk~~CavCR~pid   53 (324)
T KOG0824|consen    7 KKECLICYNTGNCPVN-LYCFHKFCYICIKGSYKNDKKTCAVCRFPID   53 (324)
T ss_pred             CCcceeeeccCCcCcc-ccccchhhhhhhcchhhcCCCCCceecCCCC
Confidence            4589999999999985 499999999999976    456999999885

>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]

Probab=95.15  E-value=0.0056  Score=55.90  Aligned_cols=41  Identities=32%  Similarity=0.566  Sum_probs=34.5

Q ss_pred             eccCCCCCCcCceeeccCCceechhchhhc-----CCCCCCCCCCCc
Q 038068           56 DCPICFEPLTVPVFQCVNGHLACSDCCAKI-----KRNCPTCSSPTV   97 (269)
Q Consensus        56 ~C~iC~~~l~~Pv~~c~cgH~fC~~C~~~~-----~~~Cp~C~~~~~   97 (269)
                      .|-||-+--++-- .=+|||..|..|+..|     ...||.||..|.
T Consensus       371 LCKICaendKdvk-IEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIK  416 (563)
T KOG1785|consen  371 LCKICAENDKDVK-IEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIK  416 (563)
T ss_pred             HHHHhhccCCCcc-cccccchHHHHHHHhhcccCCCCCCCceeeEec
Confidence            5999999777654 3489999999999999     367999998875

>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=95.10  E-value=0.015  Score=52.28  Aligned_cols=46  Identities=30%  Similarity=0.802  Sum_probs=36.8

Q ss_pred             CCCCeeeccCCCCCCcCceeeccCCceechhchhhc-----CCCCCCCCCCC
Q 038068           50 TDQDIFDCPICFEPLTVPVFQCVNGHLACSDCCAKI-----KRNCPTCSSPT   96 (269)
Q Consensus        50 ~~~~~l~C~iC~~~l~~Pv~~c~cgH~fC~~C~~~~-----~~~Cp~C~~~~   96 (269)
                      .|.+.-.|.||-+-+.--. ..+|+|..|-.|--++     +..|+.|+...
T Consensus        57 tDEen~~C~ICA~~~TYs~-~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE~  107 (493)
T COG5236          57 TDEENMNCQICAGSTTYSA-RYPCGHQICHACAVRLRALYMQKGCPLCRTET  107 (493)
T ss_pred             cccccceeEEecCCceEEE-eccCCchHHHHHHHHHHHHHhccCCCcccccc
Confidence            3457789999999777544 3599999999998776     67899999764

>COG5175 MOT2 Transcriptional repressor [Transcription]

Probab=95.05  E-value=0.0072  Score=54.09  Aligned_cols=46  Identities=33%  Similarity=0.920  Sum_probs=36.4

Q ss_pred             CCCeeeccCCCCCCcCc---eeeccCCceechhchhhc----CCCCCCCCCCCc
Q 038068           51 DQDIFDCPICFEPLTVP---VFQCVNGHLACSDCCAKI----KRNCPTCSSPTV   97 (269)
Q Consensus        51 ~~~~l~C~iC~~~l~~P---v~~c~cgH~fC~~C~~~~----~~~Cp~C~~~~~   97 (269)
                      |.+++ ||.|.+++...   .+-|+||..+|.-|+..+    ..+||.||....
T Consensus        12 deed~-cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~   64 (480)
T COG5175          12 DEEDY-CPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYD   64 (480)
T ss_pred             ccccc-CcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhcc
Confidence            33555 99999987543   566999999999999877    578999997543

>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0

Probab=94.63  E-value=0.02  Score=44.64  Aligned_cols=53  Identities=23%  Similarity=0.519  Sum_probs=41.6

Q ss_pred             ceeecCCCCeeeccCCCCCCcCceeecc---CCceechhchhhc------CCCCCCCCCCCcc
Q 038068           45 EALTITDQDIFDCPICFEPLTVPVFQCV---NGHLACSDCCAKI------KRNCPTCSSPTVI   98 (269)
Q Consensus        45 ~~~~~~~~~~l~C~iC~~~l~~Pv~~c~---cgH~fC~~C~~~~------~~~Cp~C~~~~~~   98 (269)
                      +.+|.+. ..++|.||.+...+..+.-+   ||-..|..|...+      -+.||.|+..+..
T Consensus        72 mnvF~d~-~lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKs  133 (140)
T PF05290_consen   72 MNVFLDP-KLYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKS  133 (140)
T ss_pred             heeecCC-CceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCcccccccc
Confidence            3455555 88999999998877766543   8999999998875      3689999987753

>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=94.57  E-value=0.0095  Score=52.32  Aligned_cols=41  Identities=29%  Similarity=0.737  Sum_probs=35.8

Q ss_pred             eeeccCCCCCCcCceeeccCCce-echhchhhcCCCCCCCCCCC
Q 038068           54 IFDCPICFEPLTVPVFQCVNGHL-ACSDCCAKIKRNCPTCSSPT   96 (269)
Q Consensus        54 ~l~C~iC~~~l~~Pv~~c~cgH~-fC~~C~~~~~~~Cp~C~~~~   96 (269)
                      ...|.||++...+-+++ +|||. .|..|-.++. .||+||+-+
T Consensus       300 ~~LC~ICmDaP~DCvfL-eCGHmVtCt~CGkrm~-eCPICRqyi  341 (350)
T KOG4275|consen  300 RRLCAICMDAPRDCVFL-ECGHMVTCTKCGKRMN-ECPICRQYI  341 (350)
T ss_pred             HHHHHHHhcCCcceEEe-ecCcEEeehhhccccc-cCchHHHHH
Confidence            67899999999999986 99996 7999998884 899998754

>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]

Probab=94.06  E-value=0.029  Score=50.91  Aligned_cols=44  Identities=23%  Similarity=0.621  Sum_probs=35.9

Q ss_pred             CeeeccCCCCC-CcCc------------eeeccCCceechhchhhc---CCCCCCCCCCCc
Q 038068           53 DIFDCPICFEP-LTVP------------VFQCVNGHLACSDCCAKI---KRNCPTCSSPTV   97 (269)
Q Consensus        53 ~~l~C~iC~~~-l~~P------------v~~c~cgH~fC~~C~~~~---~~~Cp~C~~~~~   97 (269)
                      ++-.|.||++- +.+|            - ..+|||.+=-.|+..|   +..||+||.++.
T Consensus       286 ~D~~C~ICmde~~h~~~~~~~~~~~~~pK-rLpCGHilHl~CLknW~ERqQTCPICr~p~i  345 (491)
T COG5243         286 SDRTCTICMDEMFHPDHEPLPRGLDMTPK-RLPCGHILHLHCLKNWLERQQTCPICRRPVI  345 (491)
T ss_pred             CCCeEEEecccccCCCCccCcccccCCcc-cccccceeeHHHHHHHHHhccCCCcccCccc
Confidence            56789999987 4444            3 2489999999999999   789999999853

>PF14447 Prok-RING_4: Prokaryotic RING finger family 4

Probab=93.60  E-value=0.052  Score=35.78  Aligned_cols=43  Identities=28%  Similarity=0.502  Sum_probs=32.2

Q ss_pred             eeeccCCCCCCcCceeeccCCceechhchhhc-CCCCCCCCCCCc
Q 038068           54 IFDCPICFEPLTVPVFQCVNGHLACSDCCAKI-KRNCPTCSSPTV   97 (269)
Q Consensus        54 ~l~C~iC~~~l~~Pv~~c~cgH~fC~~C~~~~-~~~Cp~C~~~~~   97 (269)
                      ...|-.|...-...+. .+|||++|..|+... -+-||.|..++.
T Consensus         7 ~~~~~~~~~~~~~~~~-~pCgH~I~~~~f~~~rYngCPfC~~~~~   50 (55)
T PF14447_consen    7 EQPCVFCGFVGTKGTV-LPCGHLICDNCFPGERYNGCPFCGTPFE   50 (55)
T ss_pred             ceeEEEcccccccccc-ccccceeeccccChhhccCCCCCCCccc
Confidence            3456677776555553 499999999998866 257999998875

>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=93.47  E-value=0.029  Score=50.62  Aligned_cols=47  Identities=26%  Similarity=0.596  Sum_probs=38.7

Q ss_pred             CCCCeeeccCCCCCCcCceeeccCCceechhchhhc---CCCCCCCCCCCc
Q 038068           50 TDQDIFDCPICFEPLTVPVFQCVNGHLACSDCCAKI---KRNCPTCSSPTV   97 (269)
Q Consensus        50 ~~~~~l~C~iC~~~l~~Pv~~c~cgH~fC~~C~~~~---~~~Cp~C~~~~~   97 (269)
                      .+.++-.||||.--....|++ +|+|.-|..||.+.   .+.|-.|+..+.
T Consensus       418 p~sEd~lCpICyA~pi~Avf~-PC~H~SC~~CI~qHlmN~k~CFfCktTv~  467 (489)
T KOG4692|consen  418 PDSEDNLCPICYAGPINAVFA-PCSHRSCYGCITQHLMNCKRCFFCKTTVI  467 (489)
T ss_pred             CCcccccCcceecccchhhcc-CCCCchHHHHHHHHHhcCCeeeEecceee
Confidence            345788999999988888875 99999999999986   467888877654

>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]

Probab=93.40  E-value=0.025  Score=53.55  Aligned_cols=45  Identities=20%  Similarity=0.541  Sum_probs=38.3

Q ss_pred             CCeeeccCCCCCCcCceeeccCCceechhchhhc--------CCCCCCCCCCCc
Q 038068           52 QDIFDCPICFEPLTVPVFQCVNGHLACSDCCAKI--------KRNCPTCSSPTV   97 (269)
Q Consensus        52 ~~~l~C~iC~~~l~~Pv~~c~cgH~fC~~C~~~~--------~~~Cp~C~~~~~   97 (269)
                      .....|.+|.++..+++ ...|.|.||.-|+...        .-.||.|...++
T Consensus       534 k~~~~C~lc~d~aed~i-~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~Ls  586 (791)
T KOG1002|consen  534 KGEVECGLCHDPAEDYI-ESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLS  586 (791)
T ss_pred             cCceeecccCChhhhhH-hhhhhHHHHHHHHHHHHHhhhcccCCCCcccccccc
Confidence            46789999999999998 5699999999999664        457999987664

>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=93.22  E-value=0.037  Score=50.50  Aligned_cols=45  Identities=29%  Similarity=0.693  Sum_probs=37.2

Q ss_pred             CeeeccCCCCCCcCce-----e--eccCCceechhchhhcC----------CCCCCCCCCCc
Q 038068           53 DIFDCPICFEPLTVPV-----F--QCVNGHLACSDCCAKIK----------RNCPTCSSPTV   97 (269)
Q Consensus        53 ~~l~C~iC~~~l~~Pv-----~--~c~cgH~fC~~C~~~~~----------~~Cp~C~~~~~   97 (269)
                      .+-.|-||++....+.     +  .-+|-|.||..|+..|.          ..||.||....
T Consensus       160 ~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~  221 (344)
T KOG1039|consen  160 SEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSS  221 (344)
T ss_pred             ccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccc
Confidence            6788999999988776     3  23699999999999992          67999998765

>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=92.87  E-value=0.063  Score=48.89  Aligned_cols=43  Identities=21%  Similarity=0.403  Sum_probs=35.6

Q ss_pred             eeccCCCCCCc--CceeeccCCceechhchhhc----CCCCCCCCCCCc
Q 038068           55 FDCPICFEPLT--VPVFQCVNGHLACSDCCAKI----KRNCPTCSSPTV   97 (269)
Q Consensus        55 l~C~iC~~~l~--~Pv~~c~cgH~fC~~C~~~~----~~~Cp~C~~~~~   97 (269)
                      ..|.||++-+.  +-+...+|+|.|=..|+..|    ...||+|++.+.
T Consensus       230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~  278 (348)
T KOG4628|consen  230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIR  278 (348)
T ss_pred             ceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCCcCC
Confidence            48999999876  34556799999999999999    345999998764

>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A

Probab=91.94  E-value=0.06  Score=37.58  Aligned_cols=44  Identities=30%  Similarity=0.628  Sum_probs=18.8

Q ss_pred             eeeccCCCCCCc----Cceeec---cCCceechhchhhc--------------CCCCCCCCCCCc
Q 038068           54 IFDCPICFEPLT----VPVFQC---VNGHLACSDCCAKI--------------KRNCPTCSSPTV   97 (269)
Q Consensus        54 ~l~C~iC~~~l~----~Pv~~c---~cgH~fC~~C~~~~--------------~~~Cp~C~~~~~   97 (269)
                      .+.|+||...+.    .|...|   .|+..|=..|+.+|              ...||.|+.++.
T Consensus         2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~   66 (70)
T PF11793_consen    2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS   66 (70)
T ss_dssp             --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred             CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence            468999998754    355566   47777667788888              124888887765

>KOG4367 consensus Predicted Zn-finger protein [Function unknown]

Probab=91.80  E-value=0.053  Score=50.26  Aligned_cols=32  Identities=25%  Similarity=0.642  Sum_probs=29.0

Q ss_pred             CeeeccCCCCCCcCceeeccCCceechhchhhc
Q 038068           53 DIFDCPICFEPLTVPVFQCVNGHLACSDCCAKI   85 (269)
Q Consensus        53 ~~l~C~iC~~~l~~Pv~~c~cgH~fC~~C~~~~   85 (269)
                      ++|.|+||...+.+||.. +|||..|..|...+
T Consensus         3 eelkc~vc~~f~~epiil-~c~h~lc~~ca~~~   34 (699)
T KOG4367|consen    3 EELKCPVCGSFYREPIIL-PCSHNLCQACARNI   34 (699)
T ss_pred             ccccCceehhhccCceEe-ecccHHHHHHHHhh
Confidence            679999999999999965 99999999998765

>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins

Probab=91.34  E-value=0.14  Score=33.64  Aligned_cols=49  Identities=24%  Similarity=0.527  Sum_probs=31.6

Q ss_pred             ecccCCCCCccccccccchhhhhcc--CC-CeeeeCCCCCCCCccChhHHhhhhhhhCC
Q 038068          113 VNCKNAEYGCQQKMSFSKKRGHEKT--CQ-HSPLPCPLSDCSFLGCSSQFVRHFMAKHN  168 (269)
Q Consensus       113 v~C~~~~~GC~~~~~~~~~~~He~~--C~-~~p~~Cp~~~C~~~g~~~~l~~Hl~~~H~  168 (269)
                      +.|||    |...+....|..|..+  .. -..+.||.  |... ...+|..|+...|.
T Consensus         3 f~CP~----C~~~~~~~~L~~H~~~~H~~~~~~v~CPi--C~~~-~~~~l~~Hl~~~H~   54 (54)
T PF05605_consen    3 FTCPY----CGKGFSESSLVEHCEDEHRSESKNVVCPI--CSSR-VTDNLIRHLNSQHR   54 (54)
T ss_pred             cCCCC----CCCccCHHHHHHHHHhHCcCCCCCccCCC--chhh-hhhHHHHHHHHhcC
Confidence            56776    6666666677777543  11 12578885  8754 33588889888773

Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.

>KOG3039 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.31  E-value=0.15  Score=43.92  Aligned_cols=45  Identities=22%  Similarity=0.449  Sum_probs=37.6

Q ss_pred             CeeeccCCCCCCcCce---eeccCCceechhchhhc---CCCCCCCCCCCc
Q 038068           53 DIFDCPICFEPLTVPV---FQCVNGHLACSDCCAKI---KRNCPTCSSPTV   97 (269)
Q Consensus        53 ~~l~C~iC~~~l~~Pv---~~c~cgH~fC~~C~~~~---~~~Cp~C~~~~~   97 (269)
                      ..+.||+|.+.|...+   ++-+|||+||..|.+++   ...||+|..++.
T Consensus       220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~v~pv~d~plk  270 (303)
T KOG3039|consen  220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDMVDPVTDKPLK  270 (303)
T ss_pred             cceecccchhhhcCccceEEeccCCcEeeHHHHHHhccccccccCCCCcCc
Confidence            6799999999998764   23379999999999998   467999988775

>PF04641 Rtf2: Rtf2 RING-finger

Probab=90.94  E-value=0.27  Score=43.32  Aligned_cols=46  Identities=22%  Similarity=0.491  Sum_probs=37.8

Q ss_pred             CCeeeccCCCCCCcC---ceeeccCCceechhchhhcC--CCCCCCCCCCc
Q 038068           52 QDIFDCPICFEPLTV---PVFQCVNGHLACSDCCAKIK--RNCPTCSSPTV   97 (269)
Q Consensus        52 ~~~l~C~iC~~~l~~---Pv~~c~cgH~fC~~C~~~~~--~~Cp~C~~~~~   97 (269)
                      ...+.|||....|..   =|+.-+|||+|+..++..+.  ..||.|..++.
T Consensus       111 ~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k~~~~Cp~c~~~f~  161 (260)
T PF04641_consen  111 EGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELKKSKKCPVCGKPFT  161 (260)
T ss_pred             CceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhcccccccccCCccc
Confidence            367999999999854   24555899999999999984  47999999876

>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=90.86  E-value=0.11  Score=47.04  Aligned_cols=44  Identities=25%  Similarity=0.651  Sum_probs=33.8

Q ss_pred             CCeeeccCCCCCCcCceeeccCCceec-hhchhhcCCCCCCCCCCCc
Q 038068           52 QDIFDCPICFEPLTVPVFQCVNGHLAC-SDCCAKIKRNCPTCSSPTV   97 (269)
Q Consensus        52 ~~~l~C~iC~~~l~~Pv~~c~cgH~fC-~~C~~~~~~~Cp~C~~~~~   97 (269)
                      +....|.||.+-.++.++. +|||+-| ..|...+ ..||.||+.+.
T Consensus       303 ~~p~lcVVcl~e~~~~~fv-pcGh~ccct~cs~~l-~~CPvCR~rI~  347 (355)
T KOG1571|consen  303 PQPDLCVVCLDEPKSAVFV-PCGHVCCCTLCSKHL-PQCPVCRQRIR  347 (355)
T ss_pred             CCCCceEEecCCccceeee-cCCcEEEchHHHhhC-CCCchhHHHHH
Confidence            4556899999999998875 9999966 2344444 46999998764

>KOG0825 consensus PHD Zn-finger protein [General function prediction only]

Probab=89.93  E-value=0.094  Score=51.98  Aligned_cols=45  Identities=18%  Similarity=0.433  Sum_probs=34.0

Q ss_pred             CeeeccCCCCCCcCceeec--cCCceechhchhhc---CCCCCCCCCCCc
Q 038068           53 DIFDCPICFEPLTVPVFQC--VNGHLACSDCCAKI---KRNCPTCSSPTV   97 (269)
Q Consensus        53 ~~l~C~iC~~~l~~Pv~~c--~cgH~fC~~C~~~~---~~~Cp~C~~~~~   97 (269)
                      ..-.||+|+.-+.+-....  .|+|.||..|+..|   ...||+||..+.
T Consensus       122 ~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~aqTCPiDR~EF~  171 (1134)
T KOG0825|consen  122 VENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRCAQTCPVDRGEFG  171 (1134)
T ss_pred             hhhhhhHHHHHHHHHhhccccccccccHHHHhhhhhhhcccCchhhhhhh
Confidence            4456888887665543222  59999999999999   478999998764

>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]

Probab=89.68  E-value=0.14  Score=47.74  Aligned_cols=44  Identities=23%  Similarity=0.620  Sum_probs=36.2

Q ss_pred             CeeeccCCCCCCcCce---eeccCCceechhchhhc-CCCCCCCCCCC
Q 038068           53 DIFDCPICFEPLTVPV---FQCVNGHLACSDCCAKI-KRNCPTCSSPT   96 (269)
Q Consensus        53 ~~l~C~iC~~~l~~Pv---~~c~cgH~fC~~C~~~~-~~~Cp~C~~~~   96 (269)
                      +.-.||||++-+-+-+   ....|.|.|=.+|+.+| ...||+||--.
T Consensus       174 ELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~~scpvcR~~q  221 (493)
T KOG0804|consen  174 ELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWDSSCPVCRYCQ  221 (493)
T ss_pred             cCCCcchhHhhcCccccceeeeecccccchHHHhhcccCcChhhhhhc
Confidence            6779999999887664   44579999999999999 46899998643

>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]

Probab=89.32  E-value=0.24  Score=44.07  Aligned_cols=77  Identities=22%  Similarity=0.412  Sum_probs=49.4

Q ss_pred             CeeeccCCCCCCcCceeeccCCceechhchhhc-CCCCCCCCCCCccccchhHHHHhhcceecccCCCCCcccc-ccccc
Q 038068           53 DIFDCPICFEPLTVPVFQCVNGHLACSDCCAKI-KRNCPTCSSPTVIVRNWAIEKVIELVQVNCKNAEYGCQQK-MSFSK  130 (269)
Q Consensus        53 ~~l~C~iC~~~l~~Pv~~c~cgH~fC~~C~~~~-~~~Cp~C~~~~~~~~~~~l~~~i~~l~v~C~~~~~GC~~~-~~~~~  130 (269)
                      ..-.|.-|..++..==..-+|.|+||..|-..- .+.||.|...+     ..++.....-.+-|. ...||.-+ +.-.+
T Consensus        89 ~VHfCd~Cd~PI~IYGRmIPCkHvFCl~CAr~~~dK~Cp~C~d~V-----qrIeq~~~g~iFmC~-~~~GC~RTyLsqrD  162 (389)
T KOG2932|consen   89 RVHFCDRCDFPIAIYGRMIPCKHVFCLECARSDSDKICPLCDDRV-----QRIEQIMMGGIFMCA-APHGCLRTYLSQRD  162 (389)
T ss_pred             ceEeecccCCcceeeecccccchhhhhhhhhcCccccCcCcccHH-----HHHHHhcccceEEee-cchhHHHHHhhHHH
Confidence            356688999887754444589999999996543 45899996543     335555555566675 34566543 23345


Q ss_pred             hhhhh
Q 038068          131 KRGHE  135 (269)
Q Consensus       131 ~~~He  135 (269)
                      |+.|.
T Consensus       163 lqAHI  167 (389)
T KOG2932|consen  163 LQAHI  167 (389)
T ss_pred             HHHHh
Confidence            55554

>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines

Probab=89.01  E-value=0.18  Score=28.01  Aligned_cols=22  Identities=23%  Similarity=0.347  Sum_probs=14.0

Q ss_pred             eccCCCCCCcCceeecc-CCcee
Q 038068           56 DCPICFEPLTVPVFQCV-NGHLA   77 (269)
Q Consensus        56 ~C~iC~~~l~~Pv~~c~-cgH~f   77 (269)
                      .||.|...+..-...|+ |||.|
T Consensus         2 ~CP~C~~~V~~~~~~Cp~CG~~F   24 (26)
T PF10571_consen    2 TCPECGAEVPESAKFCPHCGYDF   24 (26)
T ss_pred             cCCCCcCCchhhcCcCCCCCCCC
Confidence            47777776655555566 77765

Several members are annotated as putative helicases.

>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=89.00  E-value=0.083  Score=53.41  Aligned_cols=45  Identities=29%  Similarity=0.661  Sum_probs=36.0

Q ss_pred             CeeeccCCCCCCc-----Cceeecc-CCceechhchhhc-----CCCCCCCCCCCc
Q 038068           53 DIFDCPICFEPLT-----VPVFQCV-NGHLACSDCCAKI-----KRNCPTCSSPTV   97 (269)
Q Consensus        53 ~~l~C~iC~~~l~-----~Pv~~c~-cgH~fC~~C~~~~-----~~~Cp~C~~~~~   97 (269)
                      ..-+|+||..++.     -|-..|+ |.|-|=.+|+.+|     ...||.||..++
T Consensus      1468 G~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219        1468 GHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred             CcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence            3457999999885     4544565 9999999999999     578999997764

>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=88.73  E-value=0.32  Score=44.97  Aligned_cols=100  Identities=26%  Similarity=0.472  Sum_probs=60.5

Q ss_pred             CeeeccCCCCCCcCc--eeeccCCceechhchhhc-----------CCCCCCCCCCCcc--------------c--cchh
Q 038068           53 DIFDCPICFEPLTVP--VFQCVNGHLACSDCCAKI-----------KRNCPTCSSPTVI--------------V--RNWA  103 (269)
Q Consensus        53 ~~l~C~iC~~~l~~P--v~~c~cgH~fC~~C~~~~-----------~~~Cp~C~~~~~~--------------~--~~~~  103 (269)
                      ..+.|.||.+-....  ++..+|+|+||.+|....           .-+||.+..+-..              .  ....
T Consensus       183 slf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C~~~a~~g~vKelvg~EL~arYe~l~  262 (445)
T KOG1814|consen  183 SLFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKCGSVAPPGQVKELVGDELFARYEKLM  262 (445)
T ss_pred             hcccceeeehhhcCcceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCCCcccCCchHHHHHHHHHHHHHHHHHH
Confidence            578999999977653  444599999999998764           3468775543210              0  1223


Q ss_pred             HHHHhhcce--ecccCCCCCccccccccchhhhhc---cCCCeee-eCCC-----CCCCCccC
Q 038068          104 IEKVIELVQ--VNCKNAEYGCQQKMSFSKKRGHEK---TCQHSPL-PCPL-----SDCSFLGC  155 (269)
Q Consensus       104 l~~~i~~l~--v~C~~~~~GC~~~~~~~~~~~He~---~C~~~p~-~Cp~-----~~C~~~g~  155 (269)
                      +++.+..+.  +.||++  -|+.-. ..+...-..   .|.|+-| .|..     ..|++.+.
T Consensus       263 lqk~l~~msdv~yCPr~--~Cq~p~-~~d~~~~l~~CskCnFaFCtlCk~t~HG~s~Ck~~~~  322 (445)
T KOG1814|consen  263 LQKTLELMSDVVYCPRA--CCQLPV-KQDPGRALAICSKCNFAFCTLCKLTWHGVSPCKVKAE  322 (445)
T ss_pred             HHHHHHhhcccccCChh--hccCcc-ccCchhhhhhhccCccHHHHHHHHhhcCCCcccCchH
Confidence            455555555  899997  566554 444444443   4555532 2221     36887754

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=88.03  E-value=0.23  Score=45.82  Aligned_cols=42  Identities=38%  Similarity=0.719  Sum_probs=33.9

Q ss_pred             eeccCCCCCCcCcee----eccCCceechhchhhc-----CCCCCCCCCCC
Q 038068           55 FDCPICFEPLTVPVF----QCVNGHLACSDCCAKI-----KRNCPTCSSPT   96 (269)
Q Consensus        55 l~C~iC~~~l~~Pv~----~c~cgH~fC~~C~~~~-----~~~Cp~C~~~~   96 (269)
                      ..||||++-..-|.-    .-.|||.|-++|+++|     ...||.|....
T Consensus         5 ~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~ka   55 (463)
T KOG1645|consen    5 TTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKA   55 (463)
T ss_pred             ccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCChh
Confidence            579999998776642    2379999999999999     46899997643

>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]

Probab=87.38  E-value=0.75  Score=41.36  Aligned_cols=45  Identities=27%  Similarity=0.574  Sum_probs=35.4

Q ss_pred             CeeeccCCCCCCcCceeeccCCceechhchhhc---CCCCCCCCCCCc
Q 038068           53 DIFDCPICFEPLTVPVFQCVNGHLACSDCCAKI---KRNCPTCSSPTV   97 (269)
Q Consensus        53 ~~l~C~iC~~~l~~Pv~~c~cgH~fC~~C~~~~---~~~Cp~C~~~~~   97 (269)
                      +.-.||+|..-...|-.....|-+||..|+-..   -+.||+-..+..
T Consensus       299 ~~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~~~~~CPVT~~p~~  346 (357)
T KOG0826|consen  299 DREVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVVNYGHCPVTGYPAS  346 (357)
T ss_pred             ccccChhHHhccCCCceEEecceEEeHHHHHHHHHhcCCCCccCCcch
Confidence            556899999998888655567999999999775   468998665543

>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=86.91  E-value=0.17  Score=44.24  Aligned_cols=45  Identities=20%  Similarity=0.449  Sum_probs=35.2

Q ss_pred             CeeeccCCCCCCcCc---------eeeccCCceechhchhhc-----CCCCCCCCCCCc
Q 038068           53 DIFDCPICFEPLTVP---------VFQCVNGHLACSDCCAKI-----KRNCPTCSSPTV   97 (269)
Q Consensus        53 ~~l~C~iC~~~l~~P---------v~~c~cgH~fC~~C~~~~-----~~~Cp~C~~~~~   97 (269)
                      ++-.|.+|..-+...         .++.+|+|+|=..|+..|     ++.||.|++.+.
T Consensus       223 ~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVd  281 (328)
T KOG1734|consen  223 SDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVD  281 (328)
T ss_pred             CcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhh
Confidence            445788888766543         356789999999999998     578999988664

>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A

Probab=86.45  E-value=0.46  Score=25.42  Aligned_cols=24  Identities=33%  Similarity=0.722  Sum_probs=17.7

Q ss_pred             eeCCCCCCCCccChhHHhhhhhhhCC
Q 038068          143 LPCPLSDCSFLGCSSQFVRHFMAKHN  168 (269)
Q Consensus       143 ~~Cp~~~C~~~g~~~~l~~Hl~~~H~  168 (269)
                      +.|+.  |+|......|..|+...|.
T Consensus         1 y~C~~--C~y~t~~~~l~~H~~~~H~   24 (24)
T PF13909_consen    1 YKCPH--CSYSTSKSNLKRHLKRHHP   24 (24)
T ss_dssp             EE-SS--SS-EESHHHHHHHHHHHHS
T ss_pred             CCCCC--CCCcCCHHHHHHHHHhhCc
Confidence            36774  9998888899999988773

>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length

Probab=86.11  E-value=0.2  Score=34.79  Aligned_cols=38  Identities=32%  Similarity=0.781  Sum_probs=22.8

Q ss_pred             eeccCCCCCCcCceeeccCCceechhchhhc--CCCCCCCCCCCc
Q 038068           55 FDCPICFEPLTVPVFQCVNGHLACSDCCAKI--KRNCPTCSSPTV   97 (269)
Q Consensus        55 l~C~iC~~~l~~Pv~~c~cgH~fC~~C~~~~--~~~Cp~C~~~~~   97 (269)
                      +.||.|..+|..     .-|+..|..|-...  ...||.|..++.
T Consensus         2 ~~CP~C~~~L~~-----~~~~~~C~~C~~~~~~~a~CPdC~~~Le   41 (70)
T PF07191_consen    2 NTCPKCQQELEW-----QGGHYHCEACQKDYKKEAFCPDCGQPLE   41 (70)
T ss_dssp             -B-SSS-SBEEE-----ETTEEEETTT--EEEEEEE-TTT-SB-E
T ss_pred             CcCCCCCCccEE-----eCCEEECccccccceecccCCCcccHHH
Confidence            689999997542     23899999998876  467999988764

Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.

>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=85.72  E-value=0.6  Score=43.00  Aligned_cols=42  Identities=26%  Similarity=0.652  Sum_probs=31.8

Q ss_pred             CeeeccCCCCC---CcCceeeccCCceechhchhhc------CCCCCCCCCC
Q 038068           53 DIFDCPICFEP---LTVPVFQCVNGHLACSDCCAKI------KRNCPTCSSP   95 (269)
Q Consensus        53 ~~l~C~iC~~~---l~~Pv~~c~cgH~fC~~C~~~~------~~~Cp~C~~~   95 (269)
                      ..|.|||=.+-   =.||+. -.|||+.|..-+.++      +.+||.|=..
T Consensus       333 SvF~CPVlKeqtsdeNPPm~-L~CGHVISkdAlnrLS~ng~~sfKCPYCP~e  383 (394)
T KOG2817|consen  333 SVFICPVLKEQTSDENPPMM-LICGHVISKDALNRLSKNGSQSFKCPYCPVE  383 (394)
T ss_pred             ceeecccchhhccCCCCCee-eeccceecHHHHHHHhhCCCeeeeCCCCCcc
Confidence            67899995443   358885 599999999998887      2568888543

>KOG3608 consensus Zn finger proteins [General function prediction only]

Probab=85.14  E-value=0.59  Score=42.50  Aligned_cols=114  Identities=19%  Similarity=0.438  Sum_probs=79.5

Q ss_pred             CCCeeeccCCCCCCcCcee-------ec--cCCceechhchhhc---------------CCCCCCCCCCCcc---ccchh
Q 038068           51 DQDIFDCPICFEPLTVPVF-------QC--VNGHLACSDCCAKI---------------KRNCPTCSSPTVI---VRNWA  103 (269)
Q Consensus        51 ~~~~l~C~iC~~~l~~Pv~-------~c--~cgH~fC~~C~~~~---------------~~~Cp~C~~~~~~---~~~~~  103 (269)
                      ....+-||-|.++|..--.       |+  .-.+--|+.|..+.               ..+||+|....+.   .++..
T Consensus       204 ~eKvvACp~Cg~~F~~~tkl~DH~rRqt~l~~n~fqC~~C~KrFaTeklL~~Hv~rHvn~ykCplCdmtc~~~ssL~~H~  283 (467)
T KOG3608|consen  204 NEKVVACPHCGELFRTKTKLFDHLRRQTELNTNSFQCAQCFKRFATEKLLKSHVVRHVNCYKCPLCDMTCSSASSLTTHI  283 (467)
T ss_pred             CCeEEecchHHHHhccccHHHHHHHhhhhhcCCchHHHHHHHHHhHHHHHHHHHHHhhhcccccccccCCCChHHHHHHH
Confidence            3467899999998865411       11  23477899998765               3579999876652   24455


Q ss_pred             HHHHhhcceecccCCCCCcccc-ccccchhhhhccCCCeeeeCCCCCCCCccC-hhHHhhhhhhhCC
Q 038068          104 IEKVIELVQVNCKNAEYGCQQK-MSFSKKRGHEKTCQHSPLPCPLSDCSFLGC-SSQFVRHFMAKHN  168 (269)
Q Consensus       104 l~~~i~~l~v~C~~~~~GC~~~-~~~~~~~~He~~C~~~p~~Cp~~~C~~~g~-~~~l~~Hl~~~H~  168 (269)
                      +-+-.++-.+.|.    -|... +...+|..|...=..-.+.|..++|.+... +..|..|+...|.
T Consensus       284 r~rHs~dkpfKCd----~Cd~~c~~esdL~kH~~~HS~~~y~C~h~~C~~s~r~~~q~~~H~~evhE  346 (467)
T KOG3608|consen  284 RYRHSKDKPFKCD----ECDTRCVRESDLAKHVQVHSKTVYQCEHPDCHYSVRTYTQMRRHFLEVHE  346 (467)
T ss_pred             HhhhccCCCcccc----chhhhhccHHHHHHHHHhccccceecCCCCCcHHHHHHHHHHHHHHHhcc
Confidence            5566667778876    46554 456788999874444567888888988765 5689999998884

>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair

Probab=84.63  E-value=0.88  Score=29.63  Aligned_cols=37  Identities=32%  Similarity=0.742  Sum_probs=20.6

Q ss_pred             ccCCCCCCcCc--------eeecc-CCceechhchhhc---CCCCCCCC
Q 038068           57 CPICFEPLTVP--------VFQCV-NGHLACSDCCAKI---KRNCPTCS   93 (269)
Q Consensus        57 C~iC~~~l~~P--------v~~c~-cgH~fC~~C~~~~---~~~Cp~C~   93 (269)
                      |--|..+|..+        +++|+ |++.||..|=.-+   -..||-|.
T Consensus         2 CfgC~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHE~LH~CPGC~   50 (51)
T PF07975_consen    2 CFGCQKPFPDGPEKKADSSRYRCPKCKNHFCIDCDVFIHETLHNCPGCE   50 (51)
T ss_dssp             ETTTTEE-TTS-------EEE--TTTT--B-HHHHHTTTTTS-SSSTT-
T ss_pred             CccCCCCCCCcccccccCCeEECCCCCCccccCcChhhhccccCCcCCC
Confidence            56677777664        67886 9999999994433   35799884

It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.

>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]

Probab=84.62  E-value=0.41  Score=33.98  Aligned_cols=27  Identities=26%  Similarity=0.379  Sum_probs=22.5

Q ss_pred             cCCceechhchhhc---CCCCCCCCCCCcc
Q 038068           72 VNGHLACSDCCAKI---KRNCPTCSSPTVI   98 (269)
Q Consensus        72 ~cgH~fC~~C~~~~---~~~Cp~C~~~~~~   98 (269)
                      .|.|.|=..|+.+|   +..||+++++...
T Consensus        53 ~CnHaFH~HCI~rWL~Tk~~CPld~q~w~~   82 (88)
T COG5194          53 VCNHAFHDHCIYRWLDTKGVCPLDRQTWVL   82 (88)
T ss_pred             ecchHHHHHHHHHHHhhCCCCCCCCceeEE
Confidence            47788888999999   6789999987654

>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=84.22  E-value=0.35  Score=45.71  Aligned_cols=45  Identities=27%  Similarity=0.591  Sum_probs=33.9

Q ss_pred             CeeeccCCCCCCcCc----------------eeeccCCceechhchhhc----CCCCCCCCCCCc
Q 038068           53 DIFDCPICFEPLTVP----------------VFQCVNGHLACSDCCAKI----KRNCPTCSSPTV   97 (269)
Q Consensus        53 ~~l~C~iC~~~l~~P----------------v~~c~cgH~fC~~C~~~~----~~~Cp~C~~~~~   97 (269)
                      ....|+||+.++..-                .+.++|.|+|=..|+.+|    +-.||.||.++.
T Consensus       570 ~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLP  634 (636)
T KOG0828|consen  570 RTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLP  634 (636)
T ss_pred             ccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCC
Confidence            346799998865321                123589999999999999    457999999864

>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=84.11  E-value=0.64  Score=30.09  Aligned_cols=42  Identities=33%  Similarity=0.751  Sum_probs=22.0

Q ss_pred             eeeccCCCCCCcCceeeccCCceechhchhhc-------CCCCCCCCCC
Q 038068           54 IFDCPICFEPLTVPVFQCVNGHLACSDCCAKI-------KRNCPTCSSP   95 (269)
Q Consensus        54 ~l~C~iC~~~l~~Pv~~c~cgH~fC~~C~~~~-------~~~Cp~C~~~   95 (269)
                      .|.||+-...+..|+.--.|.|.-|-+=..-+       ...||.|.++
T Consensus         2 sL~CPls~~~i~~P~Rg~~C~H~~CFDl~~fl~~~~~~~~W~CPiC~~~   50 (50)
T PF02891_consen    2 SLRCPLSFQRIRIPVRGKNCKHLQCFDLESFLESNQRTPKWKCPICNKP   50 (50)
T ss_dssp             ESB-TTTSSB-SSEEEETT--SS--EEHHHHHHHHHHS---B-TTT---
T ss_pred             eeeCCCCCCEEEeCccCCcCcccceECHHHHHHHhhccCCeECcCCcCc
Confidence            37899999999999987789999764321111       3469999753

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.

>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=83.89  E-value=0.22  Score=48.48  Aligned_cols=37  Identities=30%  Similarity=0.728  Sum_probs=30.1

Q ss_pred             CeeeccCCCCCC----cCceeeccCCceechhchhhc-CCCCC
Q 038068           53 DIFDCPICFEPL----TVPVFQCVNGHLACSDCCAKI-KRNCP   90 (269)
Q Consensus        53 ~~l~C~iC~~~l----~~Pv~~c~cgH~fC~~C~~~~-~~~Cp   90 (269)
                      +.|.|+||+..|    ..|+.. .|||+.|+.|.+.+ ...||
T Consensus        10 ~~l~c~ic~n~f~~~~~~Pvsl-~cghtic~~c~~~lyn~scp   51 (861)
T KOG3161|consen   10 LLLLCDICLNLFVVQRLEPVSL-QCGHTICGHCVQLLYNASCP   51 (861)
T ss_pred             HHhhchHHHHHHHHHhcCcccc-cccchHHHHHHHhHhhccCC
Confidence            678999997665    467754 89999999999987 56788

>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]

Probab=82.02  E-value=0.53  Score=46.97  Aligned_cols=40  Identities=30%  Similarity=0.603  Sum_probs=33.0

Q ss_pred             eeccCCCCCCcCceeeccCCceechhchhhc-----CCCCCCCCCCC
Q 038068           55 FDCPICFEPLTVPVFQCVNGHLACSDCCAKI-----KRNCPTCSSPT   96 (269)
Q Consensus        55 l~C~iC~~~l~~Pv~~c~cgH~fC~~C~~~~-----~~~Cp~C~~~~   96 (269)
                      +.|++|.+ ...++ ...|||.+|..|+...     ...||.|+..+
T Consensus       455 ~~c~ic~~-~~~~~-it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l  499 (674)
T KOG1001|consen  455 HWCHICCD-LDSFF-ITRCGHDFCVECLKKSIQQSENAPCPLCRNVL  499 (674)
T ss_pred             cccccccc-cccce-eecccchHHHHHHHhccccccCCCCcHHHHHH
Confidence            89999999 66776 5799999999999876     34699997644

>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=81.78  E-value=1.3  Score=39.55  Aligned_cols=57  Identities=32%  Similarity=0.687  Sum_probs=39.2

Q ss_pred             eeeccCCCCCCc------CceeeccCCceechhchhhc----CCCCCCCCCCCc--c------ccchhHHHHhhcc
Q 038068           54 IFDCPICFEPLT------VPVFQCVNGHLACSDCCAKI----KRNCPTCSSPTV--I------VRNWAIEKVIELV  111 (269)
Q Consensus        54 ~l~C~iC~~~l~------~Pv~~c~cgH~fC~~C~~~~----~~~Cp~C~~~~~--~------~~~~~l~~~i~~l  111 (269)
                      .+.|-||.+.+.      .|... .|||.+|..|..++    ...||.||.+..  .      ..|+++-..+..+
T Consensus         3 ~~~c~~c~~~~s~~~~~~~p~~l-~c~h~~c~~c~~~l~~~~~i~cpfcR~~~~~~~~~~~~l~kNf~ll~~~~~~   77 (296)
T KOG4185|consen    3 FPECEICNEDYSSEDGDHIPRVL-KCGHTICQNCASKLLGNSRILCPFCRETTEIPDGDVKSLQKNFALLQAIEHM   77 (296)
T ss_pred             CCceeecCccccccCcccCCccc-ccCceehHhHHHHHhcCceeeccCCCCcccCCchhHhhhhhhHHHHHHHHHH
Confidence            356777777653      34322 69999999999987    356999999842  1      3566666665554

>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]

Probab=80.80  E-value=1.8  Score=29.00  Aligned_cols=37  Identities=27%  Similarity=0.652  Sum_probs=20.6

Q ss_pred             cceecccCCCCCccccccccchhhhhccCCCeeeeCCCCCCCCccC
Q 038068          110 LVQVNCKNAEYGCQQKMSFSKKRGHEKTCQHSPLPCPLSDCSFLGC  155 (269)
Q Consensus       110 ~l~v~C~~~~~GC~~~~~~~~~~~He~~C~~~p~~Cp~~~C~~~g~  155 (269)
                      ...++|||    |.+.+-+.-..--+   .-.++.||  .|+|.|+
T Consensus        25 ~v~F~CPn----CGe~~I~Rc~~CRk---~g~~Y~Cp--~CGF~GP   61 (61)
T COG2888          25 AVKFPCPN----CGEVEIYRCAKCRK---LGNPYRCP--KCGFEGP   61 (61)
T ss_pred             eeEeeCCC----CCceeeehhhhHHH---cCCceECC--CcCccCC
Confidence            45677876    66443332221111   12478898  5999874

>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type

Probab=80.51  E-value=0.75  Score=25.21  Aligned_cols=17  Identities=35%  Similarity=0.745  Sum_probs=9.6

Q ss_pred             ccccccccchhhhhccC
Q 038068          122 CQQKMSFSKKRGHEKTC  138 (269)
Q Consensus       122 C~~~~~~~~~~~He~~C  138 (269)
                      |.-++....+..|+..|
T Consensus         8 CgR~F~~~~l~~H~~~C   24 (25)
T PF13913_consen    8 CGRKFNPDRLEKHEKIC   24 (25)
T ss_pred             CCCEECHHHHHHHHHhc
Confidence            55555555555555555

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	269
2a25_A	193	Ubiquitin ligase SIAH1; protein-peptide complex, l	1e-16
3hct_A	118	TNF receptor-associated factor 6; cross-brace, bet	8e-14
3knv_A	141	TNF receptor-associated factor 2; cross-brace, alt	2e-10
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	4e-10
1rmd_A	116	RAG1; V(D)J recombination, antibody, MAD, ring fin	8e-08
4epo_C	149	E3 ubiquitin-protein ligase RNF8; coiled-coil, E3	8e-07
3lrq_A	100	E3 ubiquitin-protein ligase TRIM37; structural gen	4e-06
1jm7_B	117	BARD1, BRCA1-associated ring domain protein 1; rin	1e-05
2y43_A	99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	3e-05
2csy_A	81	Zinc finger protein 183-like 1; ring finger protei	3e-05
2d8t_A	71	Dactylidin, ring finger protein 146; RNF146, ring	5e-05
2ecy_A	66	TNF receptor-associated factor 3; metal binding pr	2e-04
1e4u_A	78	Transcriptional repressor NOT4; gene regulation, t	2e-04
1bor_A	56	Transcription factor PML; proto-oncogene, nuclear	2e-04
1z6u_A	150	NP95-like ring finger protein isoform B; structura	3e-04

>2a25_A Ubiquitin ligase SIAH1; protein-peptide complex, ligase; 2.20A {Homo sapiens} PDB: 2an6_A 1k2f_A Length = 193

 Score = 74.8 bits (183), Expect = 1e-16
 Identities = 28/157 (17%), Positives = 58/157 (36%), Gaps = 12/157 (7%)

Query: 107 VIELVQVNCKNAEYGCQQKMSFSKKRGHEKTCQHSPLPC--PLSDCSFLGCSSQFVRHFM 164
           V   V   CK A  GC+  +  ++K  HE+ C+  P  C  P + C + G     + H M
Sbjct: 1   VANSVLFPCKYASSGCEITLPHTEKADHEELCEFRPYSCPCPGASCKWQGSLDAVMPHLM 60

Query: 165 AKH-NISAVPFKYNSLLNVNLNVNDINIDGKFSVLQEEKNDDVLFILNNNTGSLGNLVSV 223
            +H +I+ +  +    L  ++N+        + ++Q       + +L       G+    
Sbjct: 61  HQHKSITTLQGEDIVFLATDINLPGAV---DWVMMQSCFGFHFMLVLEKQEKYDGHQQFF 117

Query: 224 CCI-----ASVRKDLYYDIVARCVTGTTLKIQSSTWS 255
             +         ++  Y +         L  +++  S
Sbjct: 118 AIVQLIGTRKQAENFAYRLELNG-HRRRLTWEATPRS 153

>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A Length = 118

 Score = 65.2 bits (159), Expect = 8e-14
 Identities = 26/99 (26%), Positives = 37/99 (37%), Gaps = 10/99 (10%)

Query: 55  FDCPICFEPLTVPVFQCVNGHLACSDCCAKIKRN----CPTC---SSPTVIVRNWAIEKV 107
           ++CPIC   L   V Q   GH  C  C  K  R+    CP          +  +   ++ 
Sbjct: 19  YECPICLMALREAV-QTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKRE 77

Query: 108 IELVQVNCKNAEYGCQQKMSFSKKRGHEKTCQHSPLPCP 146
           I  + V C N   GC  KM       H+  C+ + L   
Sbjct: 78  ILSLMVKCPNE--GCLHKMELRHLEDHQAHCEFALLEHH 114

>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens} Length = 141

 Score = 56.7 bits (136), Expect = 2e-10
 Identities = 24/109 (22%), Positives = 35/109 (32%), Gaps = 20/109 (18%)

Query: 55  FDCPICFEPLTVPVFQCVNGHLACSDCCAKIKRN----CPTCSSPTV------------I 98
           + C  C   L  P  Q   GH  CS C A I  +    C  C    +             
Sbjct: 32  YLCSACRNVLRRPF-QAQCGHRYCSFCLASILSSGPQNCAACVHEGIYEEGISILESSSA 90

Query: 99  VRNWAIEKVIELVQVNCKNAEYGCQQKMSFSK-KRGHEKTCQHSPLPCP 146
             + A  + +E +   C +   GC  K +  + +  HE  C    L   
Sbjct: 91  FPDNAARREVESLPAVCPSD--GCTWKGTLKEYESCHEGRCPLMLLEHH 137

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens} Length = 170

 Score = 56.6 bits (136), Expect = 4e-10
 Identities = 31/130 (23%), Positives = 48/130 (36%), Gaps = 17/130 (13%)

Query: 53  DIFDCPICFEPLTVPVFQCVNGHLACSDCCAKIKRN----CPTCS---SPTVIVRNWAIE 105
             ++CPIC   L   V Q   GH  C  C  K  R+    CP  +       +  +   +
Sbjct: 17  SKYECPICLMALREAV-QTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAK 75

Query: 106 KVIELVQVNCKNAEYGCQQKMSFSKKRGHEKTCQHSPLPCPLSDCSFLGCSSQFVRHFMA 165
           + I  + V C N   GC  KM       H+  C+ + + CP        C   F +  + 
Sbjct: 76  REILSLMVKCPNE--GCLHKMELRHLEDHQAHCEFALMDCP-------QCQRPFQKFHIN 126

Query: 166 KHNISAVPFK 175
            H +   P +
Sbjct: 127 IHILKDCPRR 136

>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1 Length = 116

 Score = 48.8 bits (116), Expect = 8e-08
 Identities = 20/96 (20%), Positives = 34/96 (35%), Gaps = 11/96 (11%)

Query: 52  QDIFDCPICFEPLTVPVFQCVNGHLACSDCCAK----IKRNCPTCSSPT----VIVRNWA 103
                C IC   L  PV +    HL C  C  +    +   CP+C  P     +     +
Sbjct: 21  VKSISCQICEHILADPV-ETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESPVKS 79

Query: 104 IEKVIELVQVNCKNAEYGCQQKMSFSKKRGHEKTCQ 139
              ++  + V C      C +++S  K   H  + +
Sbjct: 80  FLNILNSLMVKCPAQ--DCNEEVSLEKYNHHVSSHK 113

>4epo_C E3 ubiquitin-protein ligase RNF8; coiled-coil, E3 ubiquitin ligase, protein binding complex; 4.80A {Homo sapiens} Length = 149

 Score = 46.6 bits (110), Expect = 8e-07
 Identities = 23/125 (18%), Positives = 38/125 (30%), Gaps = 11/125 (8%)

Query: 9   KAGKRVGDGEGPSSPKRQRKNNGHDEEEDGSCKNGSEALTITDQDIFDCPICFEPLTVPV 68
              K+  +    +  K   +     E+     +     +    ++   C IC E     V
Sbjct: 19  NRSKKDFEAIIQAKNKELEQTKEEKEKMQAQKEEVLSHMNDVLENELQCIICSEYFIEAV 78

Query: 69  F-QCVNGHLACSDC---CAKIKRNCPTC-----SSPTVIVRNWAIEKVIELVQVNCKNAE 119
              C   H  CS C     K K  CP C     S    +V +  I K++  +    K   
Sbjct: 79  TLNC--AHSFCSYCINEWMKRKIECPICRKDIKSKTYSLVLDNCINKMVNNLSSEVKERR 136

Query: 120 YGCQQ 124
               +
Sbjct: 137 IVLIR 141

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens} Length = 100

 Score = 43.3 bits (102), Expect = 4e-06
 Identities = 15/68 (22%), Positives = 23/68 (33%), Gaps = 7/68 (10%)

Query: 52  QDIFDCPICFEPLTVPVFQCVNGHLACSDC----CAKIKRNCPTC---SSPTVIVRNWAI 104
            ++F C IC E L           L C  C      + +  CP C        +V     
Sbjct: 20  AEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELVNCRWA 79

Query: 105 EKVIELVQ 112
           E+V + + 
Sbjct: 80  EEVTQQLD 87

>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 117

 Score = 43.0 bits (101), Expect = 1e-05
 Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 4/65 (6%)

Query: 52  QDIFDCPICFEPLTVPVFQCVNGHLACSDCCAK-IKRNCPTCSSPTV---IVRNWAIEKV 107
           + +  C  C   L  PV      H+ CS+C +  I   CP C +P     +  N  ++ +
Sbjct: 20  EKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIGTGCPVCYTPAWIQDLKINRQLDSM 79

Query: 108 IELVQ 112
           I+L  
Sbjct: 80  IQLCS 84

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens} Length = 99

 Score = 41.3 bits (97), Expect = 3e-05
 Identities = 18/69 (26%), Positives = 29/69 (42%), Gaps = 10/69 (14%)

Query: 52  QDIFDCPICFEPLTVPVF--QCVNGHLACSDC---CAKIKRNCPTCSSPTV---IVRNWA 103
            D+  C ICFE   + +   QC   H  CS C       K  CPTC        +  N  
Sbjct: 20  DDLLRCGICFEYFNIAMIIPQC--SHNYCSLCIRKFLSYKTQCPTCCVTVTEPDLKNNRI 77

Query: 104 IEKVIELVQ 112
           ++++++ + 
Sbjct: 78  LDELVKSLN 86

>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81

 Score = 40.6 bits (95), Expect = 3e-05
 Identities = 17/59 (28%), Positives = 23/59 (38%), Gaps = 6/59 (10%)

Query: 51  DQDIFDCPICFEPLTVPVF-QCVNGHLACSDC---CAKIKRNCPTCSSPTVIVRNWAIE 105
           ++  F C IC +    PV  +C   H  C  C     +    C  C  PT  + N A E
Sbjct: 12  EEIPFRCFICRQAFQNPVVTKC--RHYFCESCALEHFRATPRCYICDQPTGGIFNPAKE 68

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 71

 Score = 39.8 bits (93), Expect = 5e-05
 Identities = 14/54 (25%), Positives = 21/54 (38%), Gaps = 6/54 (11%)

Query: 43 GSEALTITDQDIFDCPICFEPLTVPV-FQCVNGHLACSDC---CAKIKRNCPTC 92
          GS   T     + +C IC +    PV   C   H+ C  C    + + + C  C
Sbjct: 4  GSSGNTAPSLTVPECAICLQTCVHPVSLPC--KHVFCYLCVKGASWLGKRCALC 55

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 66

 Score = 38.2 bits (89), Expect = 2e-04
 Identities = 16/59 (27%), Positives = 22/59 (37%), Gaps = 7/59 (11%)

Query: 42 NGSEALTITDQDIFDCPICFEPLTVPVF-QCVNGHLACSDCCAKIKRN----CPTCSSP 95
          +GS     T +D + C  C   L  P   +C  GH  C  C A +  +    C  C   
Sbjct: 3  SGSSGFVKTVEDKYKCEKCHLVLCSPKQTEC--GHRFCESCMAALLSSSSPKCTACQES 59

>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B Length = 78

 Score = 38.5 bits (89), Expect = 2e-04
 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 7/52 (13%)

Query: 51 DQDIFDCPICFEPLTVP---VFQCVNGHLACSDCCAKIKRN----CPTCSSP 95
           +D  +CP+C EPL +     F C  G+  C  C  +I+ +    CP C  P
Sbjct: 8  KEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKP 59

>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 56

 Score = 37.7 bits (88), Expect = 2e-04
 Identities = 12/41 (29%), Positives = 13/41 (31%), Gaps = 3/41 (7%)

Query: 57 CPICFEPLTVPVF-QCVNGHLACSDCCAKIKRNCPTCSSPT 96
          C  C      P    C   H  CS C       CP C +P 
Sbjct: 9  CQQCQAEAKCPKLLPC--LHTLCSGCLEASGMQCPICQAPW 47

>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens} Length = 150

 Score = 39.2 bits (91), Expect = 3e-04
 Identities = 20/95 (21%), Positives = 34/95 (35%), Gaps = 11/95 (11%)

Query: 25  RQRKNNGHDEEEDGSCKNGSEALTITDQDIFDCPICFEPLTVPVF-QCVNGHLACSDCC- 82
           R+   N    +E  S            +  F C  C E +  PV  +C   H  C DC  
Sbjct: 49  REDCQNQKLWDEVLSHLVEGPNFLKKLEQSFMCVCCQELVYQPVTTEC--FHNVCKDCLQ 106

Query: 83  ---AKIKRNCPTC----SSPTVIVRNWAIEKVIEL 110
                   +CP C        +++ N  ++ +++L
Sbjct: 107 RSFKAQVFSCPACRHDLGQNYIMIPNEILQTLLDL 141

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	269
2a25_A	193	Ubiquitin ligase SIAH1; protein-peptide complex, l	99.95
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	99.91
3hct_A	118	TNF receptor-associated factor 6; cross-brace, bet	99.73
3knv_A	141	TNF receptor-associated factor 2; cross-brace, alt	99.68
1rmd_A	116	RAG1; V(D)J recombination, antibody, MAD, ring fin	99.67
1t1h_A	78	Gspef-atpub14, armadillo repeat containing protein	99.13
3ztg_A	92	E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR	99.12
2kr4_A	85	Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ri	99.05
1wgm_A	98	Ubiquitin conjugation factor E4A; ubiquitinating e	99.05
2djb_A	72	Polycomb group ring finger protein 6; PCGF6, ring	99.03
2y43_A	99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	99.01
2csy_A	81	Zinc finger protein 183-like 1; ring finger protei	99.0
3lrq_A	100	E3 ubiquitin-protein ligase TRIM37; structural gen	99.0
2egp_A	79	Tripartite motif-containing protein 34; ZF-C3HC4 d	98.99
2kre_A	100	Ubiquitin conjugation factor E4 B; U-box domain, E	98.97
2ckl_A	108	Polycomb group ring finger protein 4; BMI1, RING1B	98.97
4ayc_A	138	E3 ubiquitin-protein ligase RNF8; DNA damage, K63	98.96
3fl2_A	124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	98.96
1jm7_B	117	BARD1, BRCA1-associated ring domain protein 1; rin	98.94
2ecy_A	66	TNF receptor-associated factor 3; metal binding pr	98.93
2ecv_A	85	Tripartite motif-containing protein 5; metal bindi	98.92
1bor_A	56	Transcription factor PML; proto-oncogene, nuclear	98.92
2yur_A	74	Retinoblastoma-binding protein 6; P53-associated c	98.92
2ecw_A	85	Tripartite motif-containing protein 30; metal bind	98.91
1z6u_A	150	NP95-like ring finger protein isoform B; structura	98.91
2d8t_A	71	Dactylidin, ring finger protein 146; RNF146, ring	98.9
2ckl_B	165	Ubiquitin ligase protein RING2; BMI1, RING1B, poly	98.88
2ysl_A	73	Tripartite motif-containing protein 31; ring-type	98.86
2yu4_A	94	E3 SUMO-protein ligase NSE2; SP-ring domain, struc	98.82
2ea6_A	69	Ring finger protein 4; RNF4, RES4-26, ring domain,	98.8
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.8
2ysj_A	63	Tripartite motif-containing protein 31; ring-type	98.79
3l11_A	115	E3 ubiquitin-protein ligase RNF168; E3 ligase, rin	98.78
1jm7_A	112	BRCA1, breast cancer type 1 susceptibility protein	98.76
3ng2_A	71	RNF4, snurf, ring finger protein 4; ring domain, E	98.75
1chc_A	68	Equine herpes virus-1 ring domain; viral protein;	98.74
2ct2_A	88	Tripartite motif protein 32; zinc-finger protein H	98.74
1g25_A	65	CDK-activating kinase assembly factor MAT1; ring f	98.73
2ecj_A	58	Tripartite motif-containing protein 39; TRIM39, ri	98.72
2f42_A	179	STIP1 homology and U-box containing protein 1; cha	98.69
2xeu_A	64	Ring finger protein 4; transcription, zinc-finger,	98.69
2ect_A	78	Ring finger protein 126; metal binding protein, st	98.65
1iym_A	55	EL5; ring-H2 finger, ubiquitin ligase, DNA binding	98.65
2ecm_A	55	Ring finger and CHY zinc finger domain- containing	98.64
4ic3_A	74	E3 ubiquitin-protein ligase XIAP; ring domain, zin	98.63
2ep4_A	74	Ring finger protein 24; zinc binding, ubiquitin, E	98.62
1e4u_A	78	Transcriptional repressor NOT4; gene regulation, t	98.61
2ecn_A	70	Ring finger protein 141; RNF141, ring domain, zinc	98.6
2kiz_A	69	E3 ubiquitin-protein ligase arkadia; ring-H2 finge	98.59
1x4j_A	75	Ring finger protein 38; structural genomics, NPPSF	98.57
2l0b_A	91	E3 ubiquitin-protein ligase praja-1; zinc finger,	98.57
3htk_C	267	E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-	98.56
2ecg_A	75	Baculoviral IAP repeat-containing protein 4; BIRC4	98.52
2ea5_A	68	Cell growth regulator with ring finger domain prot	98.49
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	98.45
2ecl_A	81	Ring-box protein 2; RNF7, ring domian, zinc-bindin	98.43
2yho_A	79	E3 ubiquitin-protein ligase mylip; ligase, E2 liga	98.36
1v87_A	114	Deltex protein 2; ring-H2 domain, zinc-binding dom	98.32
2vje_A	64	E3 ubiquitin-protein ligase MDM2; proto-oncogene,	98.25
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	98.2
2y1n_A	389	E3 ubiquitin-protein ligase; ligase-transferase co	98.15
2vje_B	63	MDM4 protein; proto-oncogene, phosphorylation, alt	98.14
3t6p_A	345	Baculoviral IAP repeat-containing protein 2; ring,	98.13
3dpl_R	106	Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST	98.1
2yuc_A	76	TNF receptor-associated factor 4; ZF-TRAF, cystein	98.03
2yre_A	100	F-box only protein 30; zinc binding, E3 ubiquitin	98.02
2yre_A	100	F-box only protein 30; zinc binding, E3 ubiquitin	98.01
2bay_A	61	PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin l	98.0
1wim_A	94	KIAA0161 protein; ring finger domain, UBCM4-intera	97.95
2yuc_A	76	TNF receptor-associated factor 4; ZF-TRAF, cystein	97.92
4a0k_B	117	E3 ubiquitin-protein ligase RBX1; ligase-DNA-bindi	97.79
3vk6_A	101	E3 ubiquitin-protein ligase hakai; HYB, phosphotyr	97.75
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	97.53
2d8s_A	80	Cellular modulator of immune recognition; C-MIR, m	97.02
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	96.89
2ct0_A	74	Non-SMC element 1 homolog; ring domain, structural	96.57
3k1l_B	381	Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A	95.91
2jun_A	101	Midline-1; B-BOX, TRIM, ring finger, alternative s	95.04
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	94.1
3hct_A	118	TNF receptor-associated factor 6; cross-brace, bet	93.06
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	92.79
1rmd_A	116	RAG1; V(D)J recombination, antibody, MAD, ring fin	91.36
2cs3_A	93	Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, s	90.48
1vyx_A	60	ORF K3, K3RING; zinc-binding protein, ring domain,	87.21
2ct7_A	86	Ring finger protein 31; IBR, structural genomics,	86.92
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	86.66
2cup_A	101	Skeletal muscle LIM-protein 1; four and half LIM d	86.45
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	86.04
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	86.02
1wfh_A	64	Zinc finger (AN1-like) family protein; ZF-AN1 doma	85.02
1wfp_A	74	Zinc finger (AN1-like) family protein; ZF-AN1 doma	83.77
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	83.73
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	83.55
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	83.2
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	83.04
3nw0_A	238	Non-structural maintenance of chromosomes element	82.98
2xqn_T	126	Testin, TESS; metal-binding protein, cytoskeleton,	82.21
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	82.21
3m62_A	968	Ubiquitin conjugation factor E4; armadillo-like re	82.1
1wg2_A	64	Zinc finger (AN1-like) family protein; riken struc	81.47
1wfl_A	74	Zinc finger protein 216; ZF-AN1 domain, zinc bindi	81.43
3knv_A	141	TNF receptor-associated factor 2; cross-brace, alt	81.03
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	80.9
1z60_A	59	TFIIH basal transcription factor complex P44 subun	80.39
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	80.34
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	80.01

>2a25_A Ubiquitin ligase SIAH1; protein-peptide complex, ligase; 2.20A {Homo sapiens} PDB: 2an6_A 1k2f_A

Probab=99.95  E-value=4.3e-29  Score=208.76  Aligned_cols=158  Identities=20%  Similarity=0.331  Sum_probs=86.4

Q ss_pred             HhhcceecccCCCCCccccccccchhhhhccCCCeeeeCCCCC--CCCccChhHHhhhhhhhCCCCccceeecceEEEEe
Q 038068          107 VIELVQVNCKNAEYGCQQKMSFSKKRGHEKTCQHSPLPCPLSD--CSFLGCSSQFVRHFMAKHNISAVPFKYNSLLNVNL  184 (269)
Q Consensus       107 ~i~~l~v~C~~~~~GC~~~~~~~~~~~He~~C~~~p~~Cp~~~--C~~~g~~~~l~~Hl~~~H~~~~~~~~~~~~~~~~l  184 (269)
                      +++++++||+|+.+||.+.++|.++..||++|+|+|+.||.++  |+|.|..++|..|+...|.|..+ . .+..+ +.+
T Consensus         1 v~~s~~~pC~~~~~GC~~~~~y~~~~~He~~C~f~p~~Cp~~g~~C~~~G~~~~l~~H~~~~H~~~~~-~-~g~~i-~f~   77 (193)
T 2a25_A            1 VANSVLFPCKYASSGCEITLPHTEKADHEELCEFRPYSCPCPGASCKWQGSLDAVMPHLMHQHKSITT-L-QGEDI-VFL   77 (193)
T ss_dssp             -----------------------------------CEECCCC--CCCCEECSTTHHHHHHHHCTTSCE-E-ESSEE-EEE
T ss_pred             CccceEecCCCCCCCCCcccccccccchhhcCCCCCccCCCCCCCCcCCCCHHHHHHHHHHHCCCcce-e-cCceE-EEE
Confidence            4678999999999999999999999999999999999999976  99999999999999999998432 1 11111 122


Q ss_pred             eccCCCCCCceEEEEeeeCCCeEEEEEcCccC--cc---ceEEEEEeecCC--CCCeEEEEEEecCCeEEEEeeeeeeec
Q 038068          185 NVNDINIDGKFSVLQEEKNDDVLFILNNNTGS--LG---NLVSVCCIASVR--KDLYYDIVARCVTGTTLKIQSSTWSSK  257 (269)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~lF~l~~~~~~--~g---~~v~v~ci~~~~--~~f~Y~l~~~~~~~~~l~~~s~~~~~~  257 (269)
                      ..+ .++++...|++...++++.|+|+.....  .|   .+|+|+||||.+  .+|+|+|++. +++|+|+||+++++++
T Consensus        78 ~~~-~~l~~~~~~~~v~~~~g~~Fll~~~~~~~~~g~~~~~~~V~~ig~~~ea~~f~Y~l~~~-~~~r~L~~~~~~~s~~  155 (193)
T 2a25_A           78 ATD-INLPGAVDWVMMQSCFGFHFMLVLEKQEKYDGHQQFFAIVQLIGTRKQAENFAYRLELN-GHRRRLTWEATPRSIH  155 (193)
T ss_dssp             EEC-CC----CEEEEEEEETTEEEEEEEEEC------CEEEEEEEESSCHHHHTTEEEEEEEE-ETTEEEEEEECCEETT
T ss_pred             ecc-cccccceeEEEEEEecCceEEEEEEEeccCCCCcEEEEEEEEeCCcchhcceEEEEEEE-cCCCEEEEEEEEEehh
Confidence            222 2334444454444578999999865443  34   257999999976  9999999999 8999999999999997


Q ss_pred             c-ccCCCCCCCCC
Q 038068          258 V-RSDIPSPFGFF  269 (269)
Q Consensus       258 ~-~~~~~~~~~~~  269 (269)
                      + ..+..++.+||
T Consensus       156 e~~~~~~~~~d~L  168 (193)
T 2a25_A          156 EGIATAIMNSDCL  168 (193)
T ss_dssp             TCSHHHHHTTCSE
T ss_pred             hcccccccCCCEE
Confidence            5 55556656554

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=99.91  E-value=1.5e-24  Score=177.91  Aligned_cols=132  Identities=23%  Similarity=0.420  Sum_probs=117.0

Q ss_pred             CCceeecCCC-CeeeccCCCCCCcCceeeccCCceechhchhhc----CCCCCCCCCCCcc---ccchhHHHHhhcceec
Q 038068           43 GSEALTITDQ-DIFDCPICFEPLTVPVFQCVNGHLACSDCCAKI----KRNCPTCSSPTVI---VRNWAIEKVIELVQVN  114 (269)
Q Consensus        43 ~~~~~~~~~~-~~l~C~iC~~~l~~Pv~~c~cgH~fC~~C~~~~----~~~Cp~C~~~~~~---~~~~~l~~~i~~l~v~  114 (269)
                      |+...++... +.|.|+||++++.+|+ +++|||+||..|+.+|    ...||.||.++..   .++..+++++.+++|.
T Consensus         6 g~~~~~~~~~~~~~~C~IC~~~~~~pv-~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~i~~l~v~   84 (170)
T 3hcs_A            6 GYDVEFDPPLESKYECPICLMALREAV-QTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSLMVK   84 (170)
T ss_dssp             CBCSEESSCCCGGGBCTTTCSBCSSEE-ECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHTSEEE
T ss_pred             CCChhhccCCCCCCCCCCCChhhcCcE-ECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchhhhhhhHHHHHHHhhcccC
Confidence            3334455544 8899999999999998 5799999999999998    3489999999874   4788899999999999


Q ss_pred             ccCCCCCccccccccchhhhhccCCCeeeeCCCCCCCCccChhHHhhhhhhhCCCCccceeecce
Q 038068          115 CKNAEYGCQQKMSFSKKRGHEKTCQHSPLPCPLSDCSFLGCSSQFVRHFMAKHNISAVPFKYNSL  179 (269)
Q Consensus       115 C~~~~~GC~~~~~~~~~~~He~~C~~~p~~Cp~~~C~~~g~~~~l~~Hl~~~H~~~~~~~~~~~~  179 (269)
                      |+|.  ||++.+.+.++.+|+++|+|+++.||  +|++.+.+.+|..|+...+....+.+.|+..
T Consensus        85 C~n~--GC~~~~~~~~l~~H~~~C~~~~v~C~--~C~~~~~r~~l~~H~~~~C~~r~~~C~~C~~  145 (170)
T 3hcs_A           85 CPNE--GCLHKMELRHLEDHQAHCEFALMDCP--QCQRPFQKFHINIHILKDCPRRQVSCDNCAA  145 (170)
T ss_dssp             CCST--TCCCEEEGGGHHHHHTTCTTSEEECT--TTCCEEEGGGHHHHHHHTCTTCEEECTTTCC
T ss_pred             CCCC--CCCceecHhHHHHHHhcCCceeeECC--CCChHHHHHHHHHHhhhhCCCCCeECCCCCC
Confidence            9985  99999999999999999999999999  8999999999999999999998888888854

>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A

Probab=99.73  E-value=4.4e-18  Score=131.05  Aligned_cols=86  Identities=27%  Similarity=0.566  Sum_probs=77.5

Q ss_pred             CeeeccCCCCCCcCceeeccCCceechhchhhc----CCCCCCCCCCCcc---ccchhHHHHhhcceecccCCCCCcccc
Q 038068           53 DIFDCPICFEPLTVPVFQCVNGHLACSDCCAKI----KRNCPTCSSPTVI---VRNWAIEKVIELVQVNCKNAEYGCQQK  125 (269)
Q Consensus        53 ~~l~C~iC~~~l~~Pv~~c~cgH~fC~~C~~~~----~~~Cp~C~~~~~~---~~~~~l~~~i~~l~v~C~~~~~GC~~~  125 (269)
                      +.+.|+||++++..|+. ++|||+||..|+..|    ...||.||.++..   .++..+++++.++++.|+|.  ||.|.
T Consensus        17 ~~~~C~IC~~~~~~p~~-~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~i~~l~v~C~n~--gC~~~   93 (118)
T 3hct_A           17 SKYECPICLMALREAVQ-TPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSLMVKCPNE--GCLHK   93 (118)
T ss_dssp             GGGBCTTTCSBCSSEEE-CTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHTSEEECSST--TCCCE
T ss_pred             CCCCCCcCChhhcCeEE-CCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHHhcccCHHHHHHHccceeECCCC--CCCCE
Confidence            78999999999999985 699999999999998    2489999998874   37888999999999999985  99999


Q ss_pred             ccccchhhhhccCCCe
Q 038068          126 MSFSKKRGHEKTCQHS  141 (269)
Q Consensus       126 ~~~~~~~~He~~C~~~  141 (269)
                      +.+.++++|+++|.+.
T Consensus        94 ~~~~~l~~H~~~c~~~  109 (118)
T 3hct_A           94 MELRHLEDHQAHCEFA  109 (118)
T ss_dssp             EEGGGSGGGTSSSCC-
T ss_pred             EeeHHHHHHHHHchhh
Confidence            9999999999999875

>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}

Probab=99.68  E-value=4.9e-18  Score=134.84  Aligned_cols=86  Identities=28%  Similarity=0.552  Sum_probs=75.1

Q ss_pred             CCeeeccCCCCCCcCceeeccCCceechhchhhc---C-CCCCCCCCCCc------------cccchhHHHHhhcceecc
Q 038068           52 QDIFDCPICFEPLTVPVFQCVNGHLACSDCCAKI---K-RNCPTCSSPTV------------IVRNWAIEKVIELVQVNC  115 (269)
Q Consensus        52 ~~~l~C~iC~~~l~~Pv~~c~cgH~fC~~C~~~~---~-~~Cp~C~~~~~------------~~~~~~l~~~i~~l~v~C  115 (269)
                      .+.+.|+||++++.+|+ +++|||+||..|+.+|   . ..||.||.++.            ..++..+++.|.+++|.|
T Consensus        29 ~~~~~C~IC~~~~~~pv-~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~l~~~~~~~d~~~~~~i~~L~v~C  107 (141)
T 3knv_A           29 EAKYLCSACRNVLRRPF-QAQCGHRYCSFCLASILSSGPQNCAACVHEGIYEEGISILESSSAFPDNAARREVESLPAVC  107 (141)
T ss_dssp             CGGGBCTTTCSBCSSEE-ECTTSCEEEHHHHHHHGGGSCEECHHHHHTTCCCTTTTEECGGGCEECHHHHHHHHTSEEEC
T ss_pred             CcCcCCCCCChhhcCcE-ECCCCCccCHHHHHHHHhcCCCCCCCCCCcccccccccccchhhhcccHHHHHHHccccccc
Confidence            47899999999999998 5799999999999998   2 47999998652            136788999999999999


Q ss_pred             cCCCCCccccccccchhh-hhccCCC
Q 038068          116 KNAEYGCQQKMSFSKKRG-HEKTCQH  140 (269)
Q Consensus       116 ~~~~~GC~~~~~~~~~~~-He~~C~~  140 (269)
                      +|.  ||+|.+.+.++++ |+..|+.
T Consensus       108 pn~--GC~~~~~l~~l~~~H~~~~~~  131 (141)
T 3knv_A          108 PSD--GCTWKGTLKEYESCHEGRCPL  131 (141)
T ss_dssp             CST--TCCCEEEHHHHHHHTTTCCHH
T ss_pred             CCC--CCCCEeEHHHHHHHHHHHhHH
Confidence            994  9999999999998 9988864

>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1

Probab=99.67  E-value=3.5e-17  Score=125.49  Aligned_cols=86  Identities=24%  Similarity=0.487  Sum_probs=77.1

Q ss_pred             CeeeccCCCCCCcCceeeccCCceechhchhhc----CCCCCCCCCCCcc----ccchhHHHHhhcceecccCCCCCccc
Q 038068           53 DIFDCPICFEPLTVPVFQCVNGHLACSDCCAKI----KRNCPTCSSPTVI----VRNWAIEKVIELVQVNCKNAEYGCQQ  124 (269)
Q Consensus        53 ~~l~C~iC~~~l~~Pv~~c~cgH~fC~~C~~~~----~~~Cp~C~~~~~~----~~~~~l~~~i~~l~v~C~~~~~GC~~  124 (269)
                      +.+.|+||++++.+|+. ++|||+||..|+.+|    ...||.|+.++..    ..+..+.+++.++++.|+|.  ||++
T Consensus        22 ~~~~C~IC~~~~~~p~~-~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~l~~~i~~l~v~C~~~--gC~~   98 (116)
T 1rmd_A           22 KSISCQICEHILADPVE-TSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESPVKSFLNILNSLMVKCPAQ--DCNE   98 (116)
T ss_dssp             HHTBCTTTCSBCSSEEE-CTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCBCCCHHHHHHHHHCEEECCST--TCCC
T ss_pred             CCCCCCCCCcHhcCcEE-cCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhhccccHHHHHHHHHHhcCCCCCC--CCcc
Confidence            57899999999999995 699999999999988    3579999998863    24677899999999999997  9999


Q ss_pred             cccccchhhhhccCCCe
Q 038068          125 KMSFSKKRGHEKTCQHS  141 (269)
Q Consensus       125 ~~~~~~~~~He~~C~~~  141 (269)
                      .+.+.++++|+++|.+.
T Consensus        99 ~~~~~~~~~H~~~C~~~  115 (116)
T 1rmd_A           99 EVSLEKYNHHVSSHKES  115 (116)
T ss_dssp             EEEHHHHHHHHHTSCCC
T ss_pred             hhhHhHHHHHHHHhhcc
Confidence            99999999999999874

>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2

Probab=99.13  E-value=2.6e-11  Score=85.83  Aligned_cols=60  Identities=23%  Similarity=0.480  Sum_probs=50.7

Q ss_pred             CCeeeccCCCCCCcCceeeccCCceechhchhhc----CCCCCCCCCCCcc---ccchhHHHHhhcce
Q 038068           52 QDIFDCPICFEPLTVPVFQCVNGHLACSDCCAKI----KRNCPTCSSPTVI---VRNWAIEKVIELVQ  112 (269)
Q Consensus        52 ~~~l~C~iC~~~l~~Pv~~c~cgH~fC~~C~~~~----~~~Cp~C~~~~~~---~~~~~l~~~i~~l~  112 (269)
                      ++.+.|+||++++.+|+. .+|||+||..|+.+|    ...||.|+.++..   .+|..++++++.+.
T Consensus         6 ~~~~~C~IC~~~~~~Pv~-~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~l~~n~~l~~~i~~~~   72 (78)
T 1t1h_A            6 PEYFRCPISLELMKDPVI-VSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVLKSLIALWC   72 (78)
T ss_dssp             SSSSSCTTTSCCCSSEEE-ETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCEECTTTHHHHHHHH
T ss_pred             cccCCCCCccccccCCEE-cCCCCeecHHHHHHHHHHCcCCCCCCcCCCChhhCccCHHHHHHHHHHH
Confidence            478999999999999995 599999999999998    3569999998863   46888888887654

>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}

Probab=99.12  E-value=3.7e-11  Score=87.77  Aligned_cols=64  Identities=23%  Similarity=0.494  Sum_probs=53.3

Q ss_pred             CeeeccCCCCCCcCceeecc-CCceechhchhhc-----CCCCCCCCCCCc----cccchhHHHHhhcceecccC
Q 038068           53 DIFDCPICFEPLTVPVFQCV-NGHLACSDCCAKI-----KRNCPTCSSPTV----IVRNWAIEKVIELVQVNCKN  117 (269)
Q Consensus        53 ~~l~C~iC~~~l~~Pv~~c~-cgH~fC~~C~~~~-----~~~Cp~C~~~~~----~~~~~~l~~~i~~l~v~C~~  117 (269)
                      +.+.|+||++++.+|+. .+ |||+||..|+..|     ...||.|+.++.    ...|..+.++++.++-.-.+
T Consensus        12 ~~~~C~IC~~~~~~p~~-~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~~~~~~   85 (92)
T 3ztg_A           12 DELLCLICKDIMTDAVV-IPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALIANKFLRQAVNNFKNETGY   85 (92)
T ss_dssp             TTTEETTTTEECSSCEE-CTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSCCTTSCEECHHHHHHHHHHHHHHTC
T ss_pred             cCCCCCCCChhhcCceE-CCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCCCccccCcCHHHHHHHHHHHHHHhH
Confidence            67999999999999995 57 9999999999987     258999999873    35788899988887665443

>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}

Probab=99.05  E-value=1.4e-10  Score=83.73  Aligned_cols=60  Identities=15%  Similarity=0.033  Sum_probs=51.8

Q ss_pred             CCeeeccCCCCCCcCceeeccCCceechhchhhc---CCCCCCCCCCCcc---ccchhHHHHhhcce
Q 038068           52 QDIFDCPICFEPLTVPVFQCVNGHLACSDCCAKI---KRNCPTCSSPTVI---VRNWAIEKVIELVQ  112 (269)
Q Consensus        52 ~~~l~C~iC~~~l~~Pv~~c~cgH~fC~~C~~~~---~~~Cp~C~~~~~~---~~~~~l~~~i~~l~  112 (269)
                      ++.|.||||++++.+||. .+|||+||..||.+|   ...||.|+.++..   ..|..+.++|+.+.
T Consensus        12 p~~~~CpI~~~~m~dPV~-~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~l~pn~~L~~~i~~~~   77 (85)
T 2kr4_A           12 PDEFRDPLMDTLMTDPVR-LPSGTVMDRSIILRHLLNSPTDPFNRQMLTESMLEPVPELKEQIQAWM   77 (85)
T ss_dssp             CTTTBCTTTCSBCSSEEE-CTTSCEEEHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHHHH
T ss_pred             chheECcccCchhcCCeE-CCCCCEECHHHHHHHHhcCCCCCCCcCCCChHhcchHHHHHHHHHHHH
Confidence            578999999999999995 589999999999998   5689999998863   57888888887653

>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2

Probab=99.05  E-value=2.2e-10  Score=84.93  Aligned_cols=63  Identities=19%  Similarity=0.125  Sum_probs=53.7

Q ss_pred             CCCeeeccCCCCCCcCceeeccCC-ceechhchhhc---CCCCCCCCCCCcc---ccchhHHHHhhcceec
Q 038068           51 DQDIFDCPICFEPLTVPVFQCVNG-HLACSDCCAKI---KRNCPTCSSPTVI---VRNWAIEKVIELVQVN  114 (269)
Q Consensus        51 ~~~~l~C~iC~~~l~~Pv~~c~cg-H~fC~~C~~~~---~~~Cp~C~~~~~~---~~~~~l~~~i~~l~v~  114 (269)
                      .++.|.||||++++++||. .+|| |+||..||.+|   ...||.|+.++..   .+|..+.++|+.+.-.
T Consensus        19 ~p~~~~CpI~~~~m~dPV~-~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~~~   88 (98)
T 1wgm_A           19 ACDEFLDPIMSTLMCDPVV-LPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQIRPNTELKEKIQRWLAE   88 (98)
T ss_dssp             CCTTTBCTTTCSBCSSEEE-CTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCTTTSEECHHHHHHHHHHHHH
T ss_pred             CcHhcCCcCccccccCCeE-CCCCCeEECHHHHHHHHHhCCCCCCCCCCCChhhceEcHHHHHHHHHHHHH
Confidence            3578999999999999995 6999 99999999998   4679999998863   5788888888877543

>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.03  E-value=2.2e-10  Score=79.80  Aligned_cols=46  Identities=22%  Similarity=0.394  Sum_probs=41.1

Q ss_pred             CeeeccCCCCCCcCceeeccCCceechhchhhc---CCCCCCCCCCCcc
Q 038068           53 DIFDCPICFEPLTVPVFQCVNGHLACSDCCAKI---KRNCPTCSSPTVI   98 (269)
Q Consensus        53 ~~l~C~iC~~~l~~Pv~~c~cgH~fC~~C~~~~---~~~Cp~C~~~~~~   98 (269)
                      +.+.|+||++.+.+|+...+|||.||..|+..|   ...||.||.++..
T Consensus        14 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~   62 (72)
T 2djb_A           14 PYILCSICKGYLIDATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQ   62 (72)
T ss_dssp             GGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCS
T ss_pred             CCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCc
Confidence            678999999999999865599999999999998   5789999998763

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}

Probab=99.01  E-value=1e-10  Score=86.60  Aligned_cols=61  Identities=28%  Similarity=0.622  Sum_probs=51.5

Q ss_pred             CeeeccCCCCCCcCceeeccCCceechhchhhc---CCCCCCCCCCCcc---ccchhHHHHhhccee
Q 038068           53 DIFDCPICFEPLTVPVFQCVNGHLACSDCCAKI---KRNCPTCSSPTVI---VRNWAIEKVIELVQV  113 (269)
Q Consensus        53 ~~l~C~iC~~~l~~Pv~~c~cgH~fC~~C~~~~---~~~Cp~C~~~~~~---~~~~~l~~~i~~l~v  113 (269)
                      +.+.|+||++.+.+|+...+|||.||..|+..|   ...||.|+..+..   .+|..++++++.++-
T Consensus        21 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~~i~~~~~   87 (99)
T 2y43_A           21 DLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTEPDLKNNRILDELVKSLNF   87 (99)
T ss_dssp             HHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGGCEECHHHHHHHHHHHH
T ss_pred             CCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCChhhCCcCHHHHHHHHHHHH
Confidence            678999999999999865489999999999998   4689999998873   468888888876653

>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.00  E-value=3.8e-10  Score=80.38  Aligned_cols=56  Identities=23%  Similarity=0.430  Sum_probs=44.6

Q ss_pred             CeeeccCCCCCCcCceeeccCCceechhchhhc---CCCCCCCCCCCcc--ccchhHHHHhh
Q 038068           53 DIFDCPICFEPLTVPVFQCVNGHLACSDCCAKI---KRNCPTCSSPTVI--VRNWAIEKVIE  109 (269)
Q Consensus        53 ~~l~C~iC~~~l~~Pv~~c~cgH~fC~~C~~~~---~~~Cp~C~~~~~~--~~~~~l~~~i~  109 (269)
                      +.+.|+||++.+..|+. .+|||+||..|+..|   ...||.|+.++..  ..+..+.+.+.
T Consensus        14 ~~~~C~IC~~~~~~p~~-~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~l~~~~~   74 (81)
T 2csy_A           14 IPFRCFICRQAFQNPVV-TKCRHYFCESCALEHFRATPRCYICDQPTGGIFNPAKELMAKLQ   74 (81)
T ss_dssp             CCSBCSSSCSBCCSEEE-CTTSCEEEHHHHHHHHHHCSBCSSSCCBCCSCCEECHHHHHHHS
T ss_pred             CCCCCcCCCchhcCeeE-ccCCCHhHHHHHHHHHHCCCcCCCcCccccccCCcHHHHHHHHH
Confidence            56899999999999985 699999999999998   5689999998762  23444444433

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}

Probab=99.00  E-value=1.3e-10  Score=86.31  Aligned_cols=57  Identities=28%  Similarity=0.604  Sum_probs=45.9

Q ss_pred             CeeeccCCCCCCcCceeeccCCceechhchhhc---C-CCCCCCCCCCcc---ccchhHHHHhh
Q 038068           53 DIFDCPICFEPLTVPVFQCVNGHLACSDCCAKI---K-RNCPTCSSPTVI---VRNWAIEKVIE  109 (269)
Q Consensus        53 ~~l~C~iC~~~l~~Pv~~c~cgH~fC~~C~~~~---~-~~Cp~C~~~~~~---~~~~~l~~~i~  109 (269)
                      +.+.|+||++++..|+...+|||+||..|+..|   . ..||.||.++..   .++..++.+++
T Consensus        21 ~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~l~~~~~~~~i~~   84 (100)
T 3lrq_A           21 EVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELVNCRWAEEVTQ   84 (100)
T ss_dssp             HHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECTTHHHHHH
T ss_pred             CCCCCccCCccccCccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHHHhHhhHHHHHHHH
Confidence            678999999999999964699999999999998   3 589999998863   34555554443

>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}

Probab=98.99  E-value=9.5e-11  Score=82.94  Aligned_cols=44  Identities=36%  Similarity=0.768  Sum_probs=39.1

Q ss_pred             CeeeccCCCCCCcCceeeccCCceechhchhhc----------CCCCCCCCCCCc
Q 038068           53 DIFDCPICFEPLTVPVFQCVNGHLACSDCCAKI----------KRNCPTCSSPTV   97 (269)
Q Consensus        53 ~~l~C~iC~~~l~~Pv~~c~cgH~fC~~C~~~~----------~~~Cp~C~~~~~   97 (269)
                      +.+.|+||++.+..|+. .+|||.||..|+.+|          ...||.||..+.
T Consensus        11 ~~~~C~IC~~~~~~p~~-l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~   64 (79)
T 2egp_A           11 EEVTCPICLELLTEPLS-LDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYS   64 (79)
T ss_dssp             CCCEETTTTEECSSCCC-CSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCC
T ss_pred             cCCCCcCCCcccCCeeE-CCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCC
Confidence            67899999999999985 699999999999986          246999999876

>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B

Probab=98.97  E-value=2.8e-10  Score=84.61  Aligned_cols=60  Identities=15%  Similarity=0.053  Sum_probs=52.1

Q ss_pred             CCeeeccCCCCCCcCceeeccCCceechhchhhc---CCCCCCCCCCCcc---ccchhHHHHhhcce
Q 038068           52 QDIFDCPICFEPLTVPVFQCVNGHLACSDCCAKI---KRNCPTCSSPTVI---VRNWAIEKVIELVQ  112 (269)
Q Consensus        52 ~~~l~C~iC~~~l~~Pv~~c~cgH~fC~~C~~~~---~~~Cp~C~~~~~~---~~~~~l~~~i~~l~  112 (269)
                      ++.|.||||++++.+||. .+|||+||..||.+|   ...||.|+.++..   .+|..+.++|..+.
T Consensus        27 p~~~~CpI~~~~m~dPV~-~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~   92 (100)
T 2kre_A           27 PDEFRDPLMDTLMTDPVR-LPSGTIMDRSIILRHLLNSPTDPFNRQTLTESMLEPVPELKEQIQAWM   92 (100)
T ss_dssp             STTTBCTTTCSBCSSEEE-ETTTEEEEHHHHHHHTTSCSBCSSSCCBCCTTSSEECHHHHHHHHHHH
T ss_pred             cHhhCCcCccCcccCCeE-CCCCCEEchHHHHHHHHcCCCCCCCCCCCChhhceECHHHHHHHHHHH
Confidence            588999999999999996 589999999999998   4689999998863   57888888887764

>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A

Probab=98.97  E-value=3e-10  Score=85.50  Aligned_cols=60  Identities=13%  Similarity=0.294  Sum_probs=49.6

Q ss_pred             CeeeccCCCCCCcCceeeccCCceechhchhhc---CCCCCCCCCCCcc-------ccchhHHHHhhcce
Q 038068           53 DIFDCPICFEPLTVPVFQCVNGHLACSDCCAKI---KRNCPTCSSPTVI-------VRNWAIEKVIELVQ  112 (269)
Q Consensus        53 ~~l~C~iC~~~l~~Pv~~c~cgH~fC~~C~~~~---~~~Cp~C~~~~~~-------~~~~~l~~~i~~l~  112 (269)
                      +.+.|+||.+++.+|+...+|||+||..|+..|   ...||.|+..+..       ..|..+.+++..+.
T Consensus        14 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~l~~n~~l~~~i~~~~   83 (108)
T 2ckl_A           14 PHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKTRPLLNIRSDKTLQDIVYKLV   83 (108)
T ss_dssp             GGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCSSCGGGGEEECHHHHHHHHHHS
T ss_pred             CcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHhCCcCcCCCccccccCcccccCcCHHHHHHHHHHh
Confidence            678999999999999965599999999999998   4689999998763       35677777776543

>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C

Probab=98.96  E-value=2.2e-10  Score=90.08  Aligned_cols=45  Identities=29%  Similarity=0.514  Sum_probs=40.1

Q ss_pred             CeeeccCCCCCCcCceeeccCCceechhchhhc---CCCCCCCCCCCcc
Q 038068           53 DIFDCPICFEPLTVPVFQCVNGHLACSDCCAKI---KRNCPTCSSPTVI   98 (269)
Q Consensus        53 ~~l~C~iC~~~l~~Pv~~c~cgH~fC~~C~~~~---~~~Cp~C~~~~~~   98 (269)
                      +++.|+||++.+.+|+. .+|||.||..|+..|   ...||.||.++..
T Consensus        52 ~~~~C~iC~~~~~~~~~-~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~   99 (138)
T 4ayc_A           52 NELQCIICSEYFIEAVT-LNCAHSFCSYCINEWMKRKIECPICRKDIKS   99 (138)
T ss_dssp             HHSBCTTTCSBCSSEEE-ETTSCEEEHHHHHHHTTTCSBCTTTCCBCCC
T ss_pred             ccCCCcccCcccCCceE-CCCCCCccHHHHHHHHHcCCcCCCCCCcCCC
Confidence            56889999999999995 599999999999998   5679999998863

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}

Probab=98.96  E-value=2.4e-10  Score=88.14  Aligned_cols=58  Identities=26%  Similarity=0.526  Sum_probs=48.9

Q ss_pred             CeeeccCCCCCCcCceeeccCCceechhchhhc----CCCCCCCCCCCcc----ccchhHHHHhhcc
Q 038068           53 DIFDCPICFEPLTVPVFQCVNGHLACSDCCAKI----KRNCPTCSSPTVI----VRNWAIEKVIELV  111 (269)
Q Consensus        53 ~~l~C~iC~~~l~~Pv~~c~cgH~fC~~C~~~~----~~~Cp~C~~~~~~----~~~~~l~~~i~~l  111 (269)
                      +.+.|+||++++.+|+. .+|||+||..|+..|    ...||.||.++..    ..|..+.+++..+
T Consensus        51 ~~~~C~IC~~~~~~p~~-~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~  116 (124)
T 3fl2_A           51 ETFQCICCQELVFRPIT-TVCQHNVCKDCLDRSFRAQVFSCPACRYDLGRSYAMQVNQPLQTVLNQL  116 (124)
T ss_dssp             HHTBCTTTSSBCSSEEE-CTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCCCHHHHHHHHHH
T ss_pred             cCCCCCcCChHHcCcEE-eeCCCcccHHHHHHHHhHCcCCCCCCCccCCCCCCCCCCHHHHHHHHHH
Confidence            67899999999999995 599999999999988    2489999998864    4677888777654

>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.94  E-value=3e-10  Score=86.80  Aligned_cols=60  Identities=28%  Similarity=0.628  Sum_probs=49.6

Q ss_pred             CeeeccCCCCCCcCceeeccCCceechhchhhc-CCCCCCCCCCCcc---ccchhHHHHhhcce
Q 038068           53 DIFDCPICFEPLTVPVFQCVNGHLACSDCCAKI-KRNCPTCSSPTVI---VRNWAIEKVIELVQ  112 (269)
Q Consensus        53 ~~l~C~iC~~~l~~Pv~~c~cgH~fC~~C~~~~-~~~Cp~C~~~~~~---~~~~~l~~~i~~l~  112 (269)
                      +.+.|+||++++..|+...+|||+||..|+..| ...||.|+.++..   ..|..+.+++..++
T Consensus        21 ~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~~~CP~Cr~~~~~~~~~~n~~l~~l~~~~~   84 (117)
T 1jm7_B           21 KLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIGTGCPVCYTPAWIQDLKINRQLDSMIQLCS   84 (117)
T ss_dssp             HTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTTTBCSSSCCBCSCSSCCCCHHHHHHHHHHH
T ss_pred             hCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhcCCCcCCCCcCccccccccHHHHHHHHHHH
Confidence            678999999999999964489999999999998 4589999998852   45777777776543

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.93  E-value=6.9e-10  Score=75.87  Aligned_cols=44  Identities=30%  Similarity=0.671  Sum_probs=39.5

Q ss_pred             CeeeccCCCCCCcCceeeccCCceechhchhhc----CCCCCCCCCCCc
Q 038068           53 DIFDCPICFEPLTVPVFQCVNGHLACSDCCAKI----KRNCPTCSSPTV   97 (269)
Q Consensus        53 ~~l~C~iC~~~l~~Pv~~c~cgH~fC~~C~~~~----~~~Cp~C~~~~~   97 (269)
                      +.+.|+||++.+..|+. .+|||+||..|+.+|    ...||.||.++.
T Consensus        14 ~~~~C~IC~~~~~~p~~-~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~   61 (66)
T 2ecy_A           14 DKYKCEKCHLVLCSPKQ-TECGHRFCESCMAALLSSSSPKCTACQESIV   61 (66)
T ss_dssp             CCEECTTTCCEESSCCC-CSSSCCCCHHHHHHHHTTSSCCCTTTCCCCC
T ss_pred             cCCCCCCCChHhcCeeE-CCCCCHHHHHHHHHHHHhCcCCCCCCCcCCC
Confidence            67999999999999985 699999999999988    357999999875

>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.92  E-value=4.6e-10  Score=80.24  Aligned_cols=54  Identities=30%  Similarity=0.623  Sum_probs=43.5

Q ss_pred             CeeeccCCCCCCcCceeeccCCceechhchhhc---------CCCCCCCCCCCcc---ccchhHHHH
Q 038068           53 DIFDCPICFEPLTVPVFQCVNGHLACSDCCAKI---------KRNCPTCSSPTVI---VRNWAIEKV  107 (269)
Q Consensus        53 ~~l~C~iC~~~l~~Pv~~c~cgH~fC~~C~~~~---------~~~Cp~C~~~~~~---~~~~~l~~~  107 (269)
                      +.+.|+||++.+..|+. .+|||.||..|+..|         ...||.|+..+..   .+|..++++
T Consensus        18 ~~~~C~IC~~~~~~p~~-~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~~   83 (85)
T 2ecv_A           18 EEVTCPICLELLTQPLS-LDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIRPNRHVANI   83 (85)
T ss_dssp             CCCCCTTTCSCCSSCBC-CSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSCCCSCCCCCC
T ss_pred             CCCCCCCCCcccCCcee-CCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhcCccHHHHHh
Confidence            67899999999999985 599999999999887         4689999998763   344444433

>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.92  E-value=5e-10  Score=74.21  Aligned_cols=45  Identities=24%  Similarity=0.539  Sum_probs=40.3

Q ss_pred             CCeeeccCCCCCCcCceeeccCCceechhchhhcCCCCCCCCCCCc
Q 038068           52 QDIFDCPICFEPLTVPVFQCVNGHLACSDCCAKIKRNCPTCSSPTV   97 (269)
Q Consensus        52 ~~~l~C~iC~~~l~~Pv~~c~cgH~fC~~C~~~~~~~Cp~C~~~~~   97 (269)
                      .+.+.|+||++.+..|+. .+|||+||..|+..+...||.||..+.
T Consensus         4 ~~~~~C~IC~~~~~~p~~-l~CgH~fC~~Ci~~~~~~CP~Cr~~~~   48 (56)
T 1bor_A            4 FQFLRCQQCQAEAKCPKL-LPCLHTLCSGCLEASGMQCPICQAPWP   48 (56)
T ss_dssp             CCCSSCSSSCSSCBCCSC-STTSCCSBTTTCSSSSSSCSSCCSSSS
T ss_pred             ccCCCceEeCCccCCeEE-cCCCCcccHHHHccCCCCCCcCCcEee
Confidence            367899999999999985 699999999999988779999999875

>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}

Probab=98.92  E-value=9.9e-10  Score=76.92  Aligned_cols=44  Identities=32%  Similarity=0.660  Sum_probs=39.0

Q ss_pred             CeeeccCCCCCCcCceeecc-CCceechhchhhc---C--CCCCCCCCCCc
Q 038068           53 DIFDCPICFEPLTVPVFQCV-NGHLACSDCCAKI---K--RNCPTCSSPTV   97 (269)
Q Consensus        53 ~~l~C~iC~~~l~~Pv~~c~-cgH~fC~~C~~~~---~--~~Cp~C~~~~~   97 (269)
                      +.+.|+||++++.+|+. .+ |||+||..|+..|   .  ..||.||.++.
T Consensus        14 ~~~~C~IC~~~~~~p~~-~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~   63 (74)
T 2yur_A           14 DELLCLICKDIMTDAVV-IPCCGNSYCDECIRTALLESDEHTCPTCHQNDV   63 (74)
T ss_dssp             GGGSCSSSCCCCTTCEE-CSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSC
T ss_pred             CCCCCcCCChHHhCCeE-cCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCC
Confidence            77899999999999996 57 9999999999998   2  58999999754

>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=98.91  E-value=4e-10  Score=80.57  Aligned_cols=54  Identities=33%  Similarity=0.681  Sum_probs=43.4

Q ss_pred             CeeeccCCCCCCcCceeeccCCceechhchhhc---------CCCCCCCCCCCcc---ccchhHHHH
Q 038068           53 DIFDCPICFEPLTVPVFQCVNGHLACSDCCAKI---------KRNCPTCSSPTVI---VRNWAIEKV  107 (269)
Q Consensus        53 ~~l~C~iC~~~l~~Pv~~c~cgH~fC~~C~~~~---------~~~Cp~C~~~~~~---~~~~~l~~~  107 (269)
                      +.+.|+||++.+..|+. .+|||.||..|+..|         ...||.|+..+..   .+|..++++
T Consensus        18 ~~~~C~IC~~~~~~p~~-~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~~   83 (85)
T 2ecw_A           18 EEVTCPICLELLKEPVS-ADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLKPNLHVANI   83 (85)
T ss_dssp             TTTSCTTTCSCCSSCEE-CTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCCEECSCCCSS
T ss_pred             cCCCCcCCChhhCccee-CCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhCCcCHHHHHh
Confidence            67899999999999984 699999999999986         2479999998763   345544443

>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}

Probab=98.91  E-value=4.6e-10  Score=89.63  Aligned_cols=59  Identities=25%  Similarity=0.474  Sum_probs=50.2

Q ss_pred             CeeeccCCCCCCcCceeeccCCceechhchhhc----CCCCCCCCCCCcc----ccchhHHHHhhcce
Q 038068           53 DIFDCPICFEPLTVPVFQCVNGHLACSDCCAKI----KRNCPTCSSPTVI----VRNWAIEKVIELVQ  112 (269)
Q Consensus        53 ~~l~C~iC~~~l~~Pv~~c~cgH~fC~~C~~~~----~~~Cp~C~~~~~~----~~~~~l~~~i~~l~  112 (269)
                      +.+.|+||++++.+|+. .+|||+||..|+..|    ...||.||.++..    ..|..+.+++..+.
T Consensus        77 ~~~~C~IC~~~~~~pv~-~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~n~~l~~lv~~~~  143 (150)
T 1z6u_A           77 QSFMCVCCQELVYQPVT-TECFHNVCKDCLQRSFKAQVFSCPACRHDLGQNYIMIPNEILQTLLDLFF  143 (150)
T ss_dssp             HHTBCTTTSSBCSSEEE-CTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCBCHHHHHHHHHHS
T ss_pred             cCCEeecCChhhcCCEE-cCCCCchhHHHHHHHHHhCCCcCCCCCccCCCCCCCCCCHHHHHHHHHHh
Confidence            67899999999999996 699999999999998    2379999998873    36888888887654

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.90  E-value=1.2e-09  Score=75.78  Aligned_cols=44  Identities=23%  Similarity=0.553  Sum_probs=39.4

Q ss_pred             CeeeccCCCCCCcCceeeccCCceechhchhhc---CCCCCCCCCCCc
Q 038068           53 DIFDCPICFEPLTVPVFQCVNGHLACSDCCAKI---KRNCPTCSSPTV   97 (269)
Q Consensus        53 ~~l~C~iC~~~l~~Pv~~c~cgH~fC~~C~~~~---~~~Cp~C~~~~~   97 (269)
                      +.+.|+||++.+..|+. .+|||.||..|+.+|   ...||+||..+.
T Consensus        14 ~~~~C~IC~~~~~~~~~-~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~   60 (71)
T 2d8t_A           14 TVPECAICLQTCVHPVS-LPCKHVFCYLCVKGASWLGKRCALCRQEIP   60 (71)
T ss_dssp             SCCBCSSSSSBCSSEEE-ETTTEEEEHHHHHHCTTCSSBCSSSCCBCC
T ss_pred             CCCCCccCCcccCCCEE-ccCCCHHHHHHHHHHHHCCCcCcCcCchhC
Confidence            66899999999999985 599999999999998   467999999875

>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B

Probab=98.88  E-value=7e-10  Score=89.80  Aligned_cols=61  Identities=25%  Similarity=0.491  Sum_probs=51.1

Q ss_pred             CeeeccCCCCCCcCceeeccCCceechhchhhc----CCCCCCCCCCCcc----ccchhHHHHhhccee
Q 038068           53 DIFDCPICFEPLTVPVFQCVNGHLACSDCCAKI----KRNCPTCSSPTVI----VRNWAIEKVIELVQV  113 (269)
Q Consensus        53 ~~l~C~iC~~~l~~Pv~~c~cgH~fC~~C~~~~----~~~Cp~C~~~~~~----~~~~~l~~~i~~l~v  113 (269)
                      +.+.|+||++.+.+|+...+|||+||..|+..|    ...||.|+.++..    ..|..+++++..+.-
T Consensus        53 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~~~~l~~~i~~~~~  121 (165)
T 2ckl_B           53 SELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYP  121 (165)
T ss_dssp             HHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCSGGGEEECHHHHHHHHHHC-
T ss_pred             CCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCCcccCCcCHHHHHHHHHHHc
Confidence            678999999999999965599999999999998    4569999998852    467888888887754

>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.86  E-value=2.7e-09  Score=74.22  Aligned_cols=44  Identities=34%  Similarity=0.741  Sum_probs=39.1

Q ss_pred             CeeeccCCCCCCcCceeeccCCceechhchhhcC------CCCCCCCCCCc
Q 038068           53 DIFDCPICFEPLTVPVFQCVNGHLACSDCCAKIK------RNCPTCSSPTV   97 (269)
Q Consensus        53 ~~l~C~iC~~~l~~Pv~~c~cgH~fC~~C~~~~~------~~Cp~C~~~~~   97 (269)
                      +.+.|+||++.+..|+. .+|||.||..|+..|.      ..||.||.++.
T Consensus        19 ~~~~C~IC~~~~~~~~~-~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~   68 (73)
T 2ysl_A           19 EEVICPICLDILQKPVT-IDCGHNFCLKCITQIGETSCGFFKCPLCKTSVR   68 (73)
T ss_dssp             CCCBCTTTCSBCSSEEE-CTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCC
T ss_pred             cCCEeccCCcccCCeEE-cCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCC
Confidence            67899999999999996 4999999999999982      27999999875

>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.82  E-value=1.8e-09  Score=79.24  Aligned_cols=61  Identities=30%  Similarity=0.519  Sum_probs=49.6

Q ss_pred             CCeeeccCCCCCCcCceeeccCCceechhchhhc--C-------CCCCC--CCCC-Cc---cccchhHHHHhhcce
Q 038068           52 QDIFDCPICFEPLTVPVFQCVNGHLACSDCCAKI--K-------RNCPT--CSSP-TV---IVRNWAIEKVIELVQ  112 (269)
Q Consensus        52 ~~~l~C~iC~~~l~~Pv~~c~cgH~fC~~C~~~~--~-------~~Cp~--C~~~-~~---~~~~~~l~~~i~~l~  112 (269)
                      .+.|.||||+++|.+||....|||+||..||..|  .       ..||.  |+.. +.   ..+|..|.++|+.++
T Consensus         5 ~~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L~pn~~L~~~I~~~~   80 (94)
T 2yu4_A            5 SSGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLIQDEALRRAIENHN   80 (94)
T ss_dssp             SSCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGEEECHHHHHHHHHHH
T ss_pred             CcEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhCcCCHHHHHHHHHHH
Confidence            3679999999999999964249999999999988  2       38999  8865 44   357888998888774

>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.80  E-value=2.2e-09  Score=73.59  Aligned_cols=44  Identities=32%  Similarity=0.747  Sum_probs=38.7

Q ss_pred             CeeeccCCCCCCcCc-------eeeccCCceechhchhhc---CCCCCCCCCCCc
Q 038068           53 DIFDCPICFEPLTVP-------VFQCVNGHLACSDCCAKI---KRNCPTCSSPTV   97 (269)
Q Consensus        53 ~~l~C~iC~~~l~~P-------v~~c~cgH~fC~~C~~~~---~~~Cp~C~~~~~   97 (269)
                      +.+.|+||++.+..|       + ..+|||.||..|+..|   ...||.||.++.
T Consensus        14 ~~~~C~IC~~~~~~~~~~~~~~~-~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~   67 (69)
T 2ea6_A           14 GTVSCPICMDGYSEIVQNGRLIV-STECGHVFCSQCLRDSLKNANTCPTCRKKIN   67 (69)
T ss_dssp             CCCCCTTTCCCHHHHTTTTCCEE-ECSSSCEEEHHHHHHHHHHCSSCTTTCCCCC
T ss_pred             CCCCCcccCccccccccccCCeE-eCCCCChhcHHHHHHHHHcCCCCCCCCCccC
Confidence            678999999999887       5 5699999999999998   568999998764

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.80  E-value=2.9e-09  Score=92.67  Aligned_cols=62  Identities=21%  Similarity=0.195  Sum_probs=52.4

Q ss_pred             CCCeeeccCCCCCCcCceeeccCCceechhchhhc----CCCCCCCCCCCcc---ccchhHHHHhhccee
Q 038068           51 DQDIFDCPICFEPLTVPVFQCVNGHLACSDCCAKI----KRNCPTCSSPTVI---VRNWAIEKVIELVQV  113 (269)
Q Consensus        51 ~~~~l~C~iC~~~l~~Pv~~c~cgH~fC~~C~~~~----~~~Cp~C~~~~~~---~~~~~l~~~i~~l~v  113 (269)
                      .++.+.||||.+++.+||. .+|||+||..|+.+|    ...||.|+.++..   .+|..+.++|..+.-
T Consensus       205 ~~~~~~c~i~~~~~~dPv~-~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~l~~n~~l~~~i~~~~~  273 (281)
T 2c2l_A          205 IPDYLCGKISFELMREPCI-TPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAMKEVIDAFIS  273 (281)
T ss_dssp             CCSTTBCTTTCSBCSSEEE-CSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCEECHHHHHHHHHHHT
T ss_pred             CCcccCCcCcCCHhcCCeE-CCCCCEECHHHHHHHHHHCCCCCcCCCCCCchhcCcccHHHHHHHHHHHH
Confidence            4588999999999999995 689999999999988    2349999999863   578889988887653

>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.79  E-value=7.1e-09  Score=70.02  Aligned_cols=39  Identities=38%  Similarity=0.817  Sum_probs=34.5

Q ss_pred             CeeeccCCCCCCcCceeeccCCceechhchhhc------CCCCCCC
Q 038068           53 DIFDCPICFEPLTVPVFQCVNGHLACSDCCAKI------KRNCPTC   92 (269)
Q Consensus        53 ~~l~C~iC~~~l~~Pv~~c~cgH~fC~~C~~~~------~~~Cp~C   92 (269)
                      +.+.|+||++.+.+|+. .+|||+||..|+.+|      ...||.|
T Consensus        19 ~~~~C~IC~~~~~~p~~-~~CgH~fC~~Ci~~~~~~~~~~~~CP~C   63 (63)
T 2ysj_A           19 EEVICPICLDILQKPVT-IDCGHNFCLKCITQIGETSCGFFKCPLC   63 (63)
T ss_dssp             CCCBCTTTCSBCSSCEE-CTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred             cCCCCCcCCchhCCeEE-eCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence            67899999999999996 599999999999988      2369987

>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}

Probab=98.78  E-value=2.2e-09  Score=81.57  Aligned_cols=44  Identities=30%  Similarity=0.597  Sum_probs=39.5

Q ss_pred             CeeeccCCCCCCcCceeeccCCceechhchhhc----CCCCCCCCCCCc
Q 038068           53 DIFDCPICFEPLTVPVFQCVNGHLACSDCCAKI----KRNCPTCSSPTV   97 (269)
Q Consensus        53 ~~l~C~iC~~~l~~Pv~~c~cgH~fC~~C~~~~----~~~Cp~C~~~~~   97 (269)
                      +.+.|+||++++..|+. .+|||+||..|+..|    ...||.||..+.
T Consensus        14 ~~~~C~iC~~~~~~p~~-~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~   61 (115)
T 3l11_A           14 SECQCGICMEILVEPVT-LPCNHTLCKPCFQSTVEKASLCCPFCRRRVS   61 (115)
T ss_dssp             HHHBCTTTCSBCSSCEE-CTTSCEECHHHHCCCCCTTTSBCTTTCCBCH
T ss_pred             CCCCCccCCcccCceeE-cCCCCHHhHHHHHHHHhHCcCCCCCCCcccC
Confidence            67999999999999996 499999999999988    347999999875

>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.76  E-value=1.6e-09  Score=81.66  Aligned_cols=44  Identities=34%  Similarity=0.851  Sum_probs=39.0

Q ss_pred             CeeeccCCCCCCcCceeeccCCceechhchhhc--C----CCCCCCCCCCc
Q 038068           53 DIFDCPICFEPLTVPVFQCVNGHLACSDCCAKI--K----RNCPTCSSPTV   97 (269)
Q Consensus        53 ~~l~C~iC~~~l~~Pv~~c~cgH~fC~~C~~~~--~----~~Cp~C~~~~~   97 (269)
                      +.+.|+||++.+..|+. .+|||.||..|+..|  .    ..||.|+.++.
T Consensus        20 ~~~~C~IC~~~~~~p~~-~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~   69 (112)
T 1jm7_A           20 KILECPICLELIKEPVS-TKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDIT   69 (112)
T ss_dssp             HHTSCSSSCCCCSSCCB-CTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCC
T ss_pred             CCCCCcccChhhcCeEE-CCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCC
Confidence            56899999999999985 699999999999988  2    37999999876

>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}

Probab=98.75  E-value=2.4e-09  Score=74.01  Aligned_cols=47  Identities=30%  Similarity=0.686  Sum_probs=40.0

Q ss_pred             CCeeeccCCCCCCcCce------eeccCCceechhchhhc---CCCCCCCCCCCcc
Q 038068           52 QDIFDCPICFEPLTVPV------FQCVNGHLACSDCCAKI---KRNCPTCSSPTVI   98 (269)
Q Consensus        52 ~~~l~C~iC~~~l~~Pv------~~c~cgH~fC~~C~~~~---~~~Cp~C~~~~~~   98 (269)
                      .+.+.|+||++.+..|+      ...+|||.||..|+.+|   ...||.||.++..
T Consensus         8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~   63 (71)
T 3ng2_A            8 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH   63 (71)
T ss_dssp             TTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCC
T ss_pred             CCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccCh
Confidence            36789999999998882      35699999999999998   5789999998763

>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1

Probab=98.74  E-value=8.7e-09  Score=70.59  Aligned_cols=45  Identities=27%  Similarity=0.534  Sum_probs=39.5

Q ss_pred             CeeeccCCCCCCcCceeeccCCceechhchhhc---CCCCCCCCCCCc
Q 038068           53 DIFDCPICFEPLTVPVFQCVNGHLACSDCCAKI---KRNCPTCSSPTV   97 (269)
Q Consensus        53 ~~l~C~iC~~~l~~Pv~~c~cgH~fC~~C~~~~---~~~Cp~C~~~~~   97 (269)
                      +...|+||++.+..|+...+|||.||..|+.+|   ...||.||.++.
T Consensus         4 ~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~   51 (68)
T 1chc_A            4 VAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVE   51 (68)
T ss_dssp             CCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCC
T ss_pred             CCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhCcCcCcCCChhhH
Confidence            456899999999998656799999999999998   678999999876

>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.74  E-value=6.3e-09  Score=74.87  Aligned_cols=44  Identities=39%  Similarity=0.921  Sum_probs=38.9

Q ss_pred             CeeeccCCCCCCcC----ceeeccCCceechhchhhc---C---CCCCCCCCCCc
Q 038068           53 DIFDCPICFEPLTV----PVFQCVNGHLACSDCCAKI---K---RNCPTCSSPTV   97 (269)
Q Consensus        53 ~~l~C~iC~~~l~~----Pv~~c~cgH~fC~~C~~~~---~---~~Cp~C~~~~~   97 (269)
                      +.+.|+||++.+..    |+. .+|||.||..|+.+|   .   ..||.||..+.
T Consensus        14 ~~~~C~IC~~~~~~~~~~~~~-~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~   67 (88)
T 2ct2_A           14 EVLECPICMESFTEEQLRPKL-LHCGHTICRQCLEKLLASSINGVRCPFCSKITR   67 (88)
T ss_dssp             SCCBCTTTCCBCCTTSSCEEE-CSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBC
T ss_pred             CCCCCccCCccccccCCCeEE-CCCCChhhHHHHHHHHHcCCCCcCCCCCCCccc
Confidence            67899999999998    885 599999999999998   2   58999999875

>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.73  E-value=2.7e-09  Score=72.66  Aligned_cols=45  Identities=33%  Similarity=0.741  Sum_probs=38.1

Q ss_pred             CeeeccCCCC-CCcCce---eeccCCceechhchhhc----CCCCCCCCCCCc
Q 038068           53 DIFDCPICFE-PLTVPV---FQCVNGHLACSDCCAKI----KRNCPTCSSPTV   97 (269)
Q Consensus        53 ~~l~C~iC~~-~l~~Pv---~~c~cgH~fC~~C~~~~----~~~Cp~C~~~~~   97 (269)
                      +++.|+||++ .+..|+   ...+|||+||..|+.+|    ...||.||.++.
T Consensus         2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~   54 (65)
T 1g25_A            2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLR   54 (65)
T ss_dssp             CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCS
T ss_pred             CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccc
Confidence            5678999999 888884   24589999999999998    357999999876

>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.72  E-value=9e-09  Score=68.10  Aligned_cols=39  Identities=33%  Similarity=0.756  Sum_probs=34.3

Q ss_pred             CeeeccCCCCCCcCceeeccCCceechhchhhc------CCCCCCC
Q 038068           53 DIFDCPICFEPLTVPVFQCVNGHLACSDCCAKI------KRNCPTC   92 (269)
Q Consensus        53 ~~l~C~iC~~~l~~Pv~~c~cgH~fC~~C~~~~------~~~Cp~C   92 (269)
                      +.+.|+||++.+..|+. .+|||+||..|+.+|      ...||.|
T Consensus        14 ~~~~C~IC~~~~~~p~~-~~CgH~fC~~Ci~~~~~~~~~~~~CP~C   58 (58)
T 2ecj_A           14 VEASCSVCLEYLKEPVI-IECGHNFCKACITRWWEDLERDFPCPVC   58 (58)
T ss_dssp             CCCBCSSSCCBCSSCCC-CSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred             cCCCCccCCcccCccEe-CCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence            67899999999999985 699999999999988      2468887

>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C

Probab=98.69  E-value=8.8e-09  Score=84.18  Aligned_cols=62  Identities=21%  Similarity=0.182  Sum_probs=52.6

Q ss_pred             CCCeeeccCCCCCCcCceeeccCCceechhchhhc---C-CCCCCCCCCCcc---ccchhHHHHhhccee
Q 038068           51 DQDIFDCPICFEPLTVPVFQCVNGHLACSDCCAKI---K-RNCPTCSSPTVI---VRNWAIEKVIELVQV  113 (269)
Q Consensus        51 ~~~~l~C~iC~~~l~~Pv~~c~cgH~fC~~C~~~~---~-~~Cp~C~~~~~~---~~~~~l~~~i~~l~v  113 (269)
                      .++.|.||||++++.+||. .+|||+||..|+..|   . ..||.|+.++..   .+|..+.+++..+.-
T Consensus       103 ip~~f~CPI~~elm~DPV~-~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~~L~pN~~Lk~~Ie~~~~  171 (179)
T 2f42_A          103 IPDYLCGKISFELMREPCI-TPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIPNLAMKEVIDAFIQ  171 (179)
T ss_dssp             CCGGGBCTTTCSBCSSEEE-CTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECHHHHHHHHHHHH
T ss_pred             CcHhhcccCccccCCCCeE-CCCCCEECHHHHHHHHHhCCCCCCCCcCCCChhhCcchHHHHHHHHHHHH
Confidence            3688999999999999996 599999999999998   2 359999998863   578889888887643

>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}

Probab=98.69  E-value=3.3e-09  Score=71.64  Aligned_cols=46  Identities=30%  Similarity=0.719  Sum_probs=38.8

Q ss_pred             CeeeccCCCCCCcCce------eeccCCceechhchhhc---CCCCCCCCCCCcc
Q 038068           53 DIFDCPICFEPLTVPV------FQCVNGHLACSDCCAKI---KRNCPTCSSPTVI   98 (269)
Q Consensus        53 ~~l~C~iC~~~l~~Pv------~~c~cgH~fC~~C~~~~---~~~Cp~C~~~~~~   98 (269)
                      +.+.|+||++.+..|.      ...+|||.||..|+.+|   ...||.||.++..
T Consensus         2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~   56 (64)
T 2xeu_A            2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH   56 (64)
T ss_dssp             CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCTT
T ss_pred             CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCCc
Confidence            4578999999998871      35699999999999998   5689999998763

>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.65  E-value=2.7e-08  Score=70.00  Aligned_cols=46  Identities=26%  Similarity=0.543  Sum_probs=38.4

Q ss_pred             CeeeccCCCCCCcCc--eeeccCCceechhchhhc---CCCCCCCCCCCcc
Q 038068           53 DIFDCPICFEPLTVP--VFQCVNGHLACSDCCAKI---KRNCPTCSSPTVI   98 (269)
Q Consensus        53 ~~l~C~iC~~~l~~P--v~~c~cgH~fC~~C~~~~---~~~Cp~C~~~~~~   98 (269)
                      +.+.|+||++.+..+  +...+|||.||..|+.+|   ...||+||..+..
T Consensus        14 ~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~   64 (78)
T 2ect_A           14 SGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTG   64 (78)
T ss_dssp             SSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCCC
T ss_pred             CCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccCC
Confidence            567999999999865  334589999999999998   5689999998763

>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1

Probab=98.65  E-value=2.2e-08  Score=65.59  Aligned_cols=45  Identities=27%  Similarity=0.567  Sum_probs=36.9

Q ss_pred             CeeeccCCCCCCcC---ceeeccCCceechhchhhc---CCCCCCCCCCCc
Q 038068           53 DIFDCPICFEPLTV---PVFQCVNGHLACSDCCAKI---KRNCPTCSSPTV   97 (269)
Q Consensus        53 ~~l~C~iC~~~l~~---Pv~~c~cgH~fC~~C~~~~---~~~Cp~C~~~~~   97 (269)
                      +...|+||++.+..   ++....|||.||..|+.+|   ...||.||.++.
T Consensus         4 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~   54 (55)
T 1iym_A            4 DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV   54 (55)
T ss_dssp             CSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred             CCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence            45789999999987   5543249999999999998   568999998763

>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A

Probab=98.64  E-value=2.6e-08  Score=65.10  Aligned_cols=45  Identities=31%  Similarity=0.705  Sum_probs=37.2

Q ss_pred             CeeeccCCCCCCcC---ceeeccCCceechhchhhc---CCCCCCCCCCCc
Q 038068           53 DIFDCPICFEPLTV---PVFQCVNGHLACSDCCAKI---KRNCPTCSSPTV   97 (269)
Q Consensus        53 ~~l~C~iC~~~l~~---Pv~~c~cgH~fC~~C~~~~---~~~Cp~C~~~~~   97 (269)
                      +...|+||++.+..   ++...+|||.||..|+.+|   ...||.||.++.
T Consensus         4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~   54 (55)
T 2ecm_A            4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS   54 (55)
T ss_dssp             CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred             CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence            45789999999865   2335689999999999998   578999998763

>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A

Probab=98.63  E-value=1e-08  Score=71.75  Aligned_cols=44  Identities=30%  Similarity=0.718  Sum_probs=39.7

Q ss_pred             CeeeccCCCCCCcCceeeccCCce-echhchhhcCCCCCCCCCCCcc
Q 038068           53 DIFDCPICFEPLTVPVFQCVNGHL-ACSDCCAKIKRNCPTCSSPTVI   98 (269)
Q Consensus        53 ~~l~C~iC~~~l~~Pv~~c~cgH~-fC~~C~~~~~~~Cp~C~~~~~~   98 (269)
                      +.+.|+||++.+.+|++. +|||. ||..|+..| ..||.||.++..
T Consensus        23 ~~~~C~iC~~~~~~~~~~-pCgH~~~C~~C~~~~-~~CP~Cr~~i~~   67 (74)
T 4ic3_A           23 EEKLCKICMDRNIAIVFV-PCGHLVTCKQCAEAV-DKCPMCYTVITF   67 (74)
T ss_dssp             HHTBCTTTSSSBCCEEEE-TTCCBCCCHHHHTTC-SBCTTTCCBCSE
T ss_pred             cCCCCCCCCCCCCCEEEc-CCCChhHHHHhhhcC-ccCCCcCcCccC
Confidence            568999999999999965 99999 999999999 689999998763

>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.62  E-value=2.5e-08  Score=69.50  Aligned_cols=46  Identities=24%  Similarity=0.472  Sum_probs=38.4

Q ss_pred             CeeeccCCCCCCcCce--eeccCCceechhchhhc---CCCCCCCCCCCcc
Q 038068           53 DIFDCPICFEPLTVPV--FQCVNGHLACSDCCAKI---KRNCPTCSSPTVI   98 (269)
Q Consensus        53 ~~l~C~iC~~~l~~Pv--~~c~cgH~fC~~C~~~~---~~~Cp~C~~~~~~   98 (269)
                      +...|+||++.+..+.  ...+|||.||..|+.+|   ...||.||.++..
T Consensus        14 ~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~   64 (74)
T 2ep4_A           14 LHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQ   64 (74)
T ss_dssp             CSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCSS
T ss_pred             CCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCCcCCCcCccccc
Confidence            5678999999998663  33489999999999998   5689999998753

>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B

Probab=98.61  E-value=1.7e-08  Score=71.50  Aligned_cols=45  Identities=38%  Similarity=0.894  Sum_probs=36.4

Q ss_pred             CeeeccCCCCCCc--Ccee-eccCCceechhchhhc----CCCCCCCCCCCc
Q 038068           53 DIFDCPICFEPLT--VPVF-QCVNGHLACSDCCAKI----KRNCPTCSSPTV   97 (269)
Q Consensus        53 ~~l~C~iC~~~l~--~Pv~-~c~cgH~fC~~C~~~~----~~~Cp~C~~~~~   97 (269)
                      +++.||||++++.  ++.+ .|+|||.||..|+.++    ...||.||.++.
T Consensus        10 ~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~   61 (78)
T 1e4u_A           10 DPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYP   61 (78)
T ss_dssp             CCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCS
T ss_pred             cCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccC
Confidence            6789999999985  3432 2459999999999887    357999999876

>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.60  E-value=1.1e-08  Score=70.46  Aligned_cols=43  Identities=30%  Similarity=0.617  Sum_probs=37.9

Q ss_pred             CeeeccCCCCCCcCceeeccCCceechhchhhc---CCCCCCCCCCCc
Q 038068           53 DIFDCPICFEPLTVPVFQCVNGHLACSDCCAKI---KRNCPTCSSPTV   97 (269)
Q Consensus        53 ~~l~C~iC~~~l~~Pv~~c~cgH~fC~~C~~~~---~~~Cp~C~~~~~   97 (269)
                      +.+.|+||++.+.. + ..+|||.||..|+.+|   ...||.||.++.
T Consensus        14 ~~~~C~IC~~~~~~-~-~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~   59 (70)
T 2ecn_A           14 DEEECCICMDGRAD-L-ILPCAHSFCQKCIDKWSDRHRNCPICRLQMT   59 (70)
T ss_dssp             CCCCCSSSCCSCCS-E-EETTTEEECHHHHHHSSCCCSSCHHHHHCTT
T ss_pred             CCCCCeeCCcCccC-c-ccCCCCcccHHHHHHHHHCcCcCCCcCCccc
Confidence            67899999999998 5 4699999999999998   468999998775

>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}

Probab=98.59  E-value=3.5e-08  Score=67.77  Aligned_cols=46  Identities=24%  Similarity=0.426  Sum_probs=37.6

Q ss_pred             CeeeccCCCCCCc--CceeeccCCceechhchhhc---CCCCCCCCCCCcc
Q 038068           53 DIFDCPICFEPLT--VPVFQCVNGHLACSDCCAKI---KRNCPTCSSPTVI   98 (269)
Q Consensus        53 ~~l~C~iC~~~l~--~Pv~~c~cgH~fC~~C~~~~---~~~Cp~C~~~~~~   98 (269)
                      +...|+||++.+.  .++...+|||.||..|+.+|   ...||.||..+..
T Consensus        13 ~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~   63 (69)
T 2kiz_A           13 TEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEA   63 (69)
T ss_dssp             CCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSCS
T ss_pred             CCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCccccC
Confidence            5578999999885  23445689999999999998   5689999998753

>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.57  E-value=3.4e-08  Score=69.04  Aligned_cols=46  Identities=20%  Similarity=0.398  Sum_probs=38.8

Q ss_pred             CeeeccCCCCCCcCc--eeeccCCceechhchhhc---CCCCCCCCCCCcc
Q 038068           53 DIFDCPICFEPLTVP--VFQCVNGHLACSDCCAKI---KRNCPTCSSPTVI   98 (269)
Q Consensus        53 ~~l~C~iC~~~l~~P--v~~c~cgH~fC~~C~~~~---~~~Cp~C~~~~~~   98 (269)
                      +...|+||++.+..+  +...+|||.||..|+.+|   ...||.||.++..
T Consensus        22 ~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~   72 (75)
T 1x4j_A           22 EQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSGP   72 (75)
T ss_dssp             SCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCSSCTTTCCCCCC
T ss_pred             CCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcCCC
Confidence            567899999999877  334589999999999998   5789999988753

>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}

Probab=98.57  E-value=2.3e-08  Score=72.77  Aligned_cols=44  Identities=20%  Similarity=0.441  Sum_probs=37.4

Q ss_pred             CeeeccCCCCCCcC---ceeeccCCceechhchhhc---CCCCCCCCCCCc
Q 038068           53 DIFDCPICFEPLTV---PVFQCVNGHLACSDCCAKI---KRNCPTCSSPTV   97 (269)
Q Consensus        53 ~~l~C~iC~~~l~~---Pv~~c~cgH~fC~~C~~~~---~~~Cp~C~~~~~   97 (269)
                      +...|+||++.+..   ++ ..+|||.||..|+..|   ...||.||..+.
T Consensus        39 ~~~~C~IC~~~~~~~~~~~-~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~   88 (91)
T 2l0b_A           39 QEMCCPICCSEYVKGDVAT-ELPCHHYFHKPCVSIWLQKSGTCPVCRCMFP   88 (91)
T ss_dssp             SCSEETTTTEECCTTCEEE-EETTTEEEEHHHHHHHHTTTCBCTTTCCBSS
T ss_pred             CCCCCcccChhhcCCCcEE-ecCCCChHHHHHHHHHHHcCCcCcCcCccCC
Confidence            56789999998876   55 4589999999999998   568999998764

>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}

Probab=98.56  E-value=2.7e-08  Score=85.44  Aligned_cols=60  Identities=25%  Similarity=0.470  Sum_probs=49.1

Q ss_pred             CCeeeccCCCCCCcCceeeccCCceechhchhhc--C---CCCCC--CCCCCcc---ccchhHHHHhhcc
Q 038068           52 QDIFDCPICFEPLTVPVFQCVNGHLACSDCCAKI--K---RNCPT--CSSPTVI---VRNWAIEKVIELV  111 (269)
Q Consensus        52 ~~~l~C~iC~~~l~~Pv~~c~cgH~fC~~C~~~~--~---~~Cp~--C~~~~~~---~~~~~l~~~i~~l  111 (269)
                      ...+.||||+++|.+||....|||+||..|+..+  .   ..||.  |+..+..   ..|..|.++++.+
T Consensus       179 ~~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL~pN~~L~~lve~~  248 (267)
T 3htk_C          179 KIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFVRDPIMELRCKIA  248 (267)
T ss_dssp             BCCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGEEECHHHHHHHHHH
T ss_pred             ceeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchhhCCcCHHHHHHHHHH
Confidence            4789999999999999964589999999999987  1   36999  9987653   4677777777654

>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.52  E-value=2.5e-08  Score=69.90  Aligned_cols=44  Identities=30%  Similarity=0.730  Sum_probs=39.0

Q ss_pred             CeeeccCCCCCCcCceeeccCCce-echhchhhcCCCCCCCCCCCcc
Q 038068           53 DIFDCPICFEPLTVPVFQCVNGHL-ACSDCCAKIKRNCPTCSSPTVI   98 (269)
Q Consensus        53 ~~l~C~iC~~~l~~Pv~~c~cgH~-fC~~C~~~~~~~Cp~C~~~~~~   98 (269)
                      +.+.|+||++.+..|++ .+|||. ||..|+.++ ..||.||.++..
T Consensus        24 ~~~~C~IC~~~~~~~~~-~pCgH~~~C~~C~~~~-~~CP~Cr~~i~~   68 (75)
T 2ecg_A           24 EEKLCKICMDRNIAIVF-VPCGHLVTCKQCAEAV-DKCPMCYTVITF   68 (75)
T ss_dssp             HHHSCSSSCSSCCCBCC-SSSCCCCBCHHHHHHC-SBCTTTCCBCCC
T ss_pred             CCCCCCcCCCCCCCEEE-ecCCCHHHHHHHhhCC-CCCccCCceecC
Confidence            56789999999999996 599999 999999887 589999998763

>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.49  E-value=1.1e-07  Score=65.35  Aligned_cols=44  Identities=23%  Similarity=0.481  Sum_probs=38.9

Q ss_pred             CeeeccCCCCCCcCceeeccCCce-echhchhhcCCCCCCCCCCCcc
Q 038068           53 DIFDCPICFEPLTVPVFQCVNGHL-ACSDCCAKIKRNCPTCSSPTVI   98 (269)
Q Consensus        53 ~~l~C~iC~~~l~~Pv~~c~cgH~-fC~~C~~~~~~~Cp~C~~~~~~   98 (269)
                      +...|+||++...++++ .+|||. ||..|.... ..||+||.++..
T Consensus        14 ~~~~C~IC~~~~~~~v~-~pCgH~~~C~~C~~~~-~~CP~CR~~i~~   58 (68)
T 2ea5_A           14 NSKDCVVCQNGTVNWVL-LPCRHTCLCDGCVKYF-QQCPMCRQFVQE   58 (68)
T ss_dssp             CSSCCSSSSSSCCCCEE-TTTTBCCSCTTHHHHC-SSCTTTCCCCCC
T ss_pred             CCCCCCCcCcCCCCEEE-ECCCChhhhHHHHhcC-CCCCCCCcchhc
Confidence            56789999999999986 599999 999999976 589999998763

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=98.45  E-value=4.3e-08  Score=75.66  Aligned_cols=45  Identities=31%  Similarity=0.714  Sum_probs=39.8

Q ss_pred             CeeeccCCCCCCcCc-------eeeccCCceechhchhhc---CCCCCCCCCCCcc
Q 038068           53 DIFDCPICFEPLTVP-------VFQCVNGHLACSDCCAKI---KRNCPTCSSPTVI   98 (269)
Q Consensus        53 ~~l~C~iC~~~l~~P-------v~~c~cgH~fC~~C~~~~---~~~Cp~C~~~~~~   98 (269)
                      +.+.|+||++.+..|       + ..+|||+||..|+.+|   +..||.|+..+..
T Consensus         6 ~~~~C~IC~~~~~~~~~~~~~~~-~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~   60 (133)
T 4ap4_A            6 GTVSCPICMDGYSEIVQNGRLIV-STECGHVFCSQCLRDSLKNANTCPTCRKKINH   60 (133)
T ss_dssp             CSCBCTTTCCBHHHHHHTTCCEE-EETTCCEEEHHHHHHHHTTCSBCTTTCCBCTT
T ss_pred             CCCCCcccChhhhCccccccCeE-ecCCCChhhHHHHHHHHHhCCCCCCCCCcCcc
Confidence            678999999999988       6 5699999999999998   5689999998763

>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.43  E-value=2e-07  Score=66.21  Aligned_cols=46  Identities=22%  Similarity=0.333  Sum_probs=37.8

Q ss_pred             CCeeeccCCCCCCcC--------------ceeeccCCceechhchhhc---CCCCCCCCCCCc
Q 038068           52 QDIFDCPICFEPLTV--------------PVFQCVNGHLACSDCCAKI---KRNCPTCSSPTV   97 (269)
Q Consensus        52 ~~~l~C~iC~~~l~~--------------Pv~~c~cgH~fC~~C~~~~---~~~Cp~C~~~~~   97 (269)
                      .++..|+||++.+..              ++....|||.|+..|+.+|   ...||+||.++.
T Consensus        13 ~~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~   75 (81)
T 2ecl_A           13 VECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWV   75 (81)
T ss_dssp             CCCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCC
T ss_pred             CCCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcc
Confidence            356679999999976              4444469999999999998   568999999875

>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A

Probab=98.36  E-value=1.4e-07  Score=66.80  Aligned_cols=44  Identities=30%  Similarity=0.712  Sum_probs=39.1

Q ss_pred             CeeeccCCCCCCcCceeeccCCce-echhchhhcCCCCCCCCCCCcc
Q 038068           53 DIFDCPICFEPLTVPVFQCVNGHL-ACSDCCAKIKRNCPTCSSPTVI   98 (269)
Q Consensus        53 ~~l~C~iC~~~l~~Pv~~c~cgH~-fC~~C~~~~~~~Cp~C~~~~~~   98 (269)
                      +...|+||++.+..|++. +|||. ||..|+..+. .||.||.++..
T Consensus        17 ~~~~C~IC~~~~~~~v~~-pCgH~~~C~~C~~~~~-~CP~Cr~~i~~   61 (79)
T 2yho_A           17 EAMLCMVCCEEEINSTFC-PCGHTVCCESCAAQLQ-SCPVCRSRVEH   61 (79)
T ss_dssp             HHTBCTTTSSSBCCEEEE-TTCBCCBCHHHHTTCS-BCTTTCCBCCE
T ss_pred             CCCEeEEeCcccCcEEEE-CCCCHHHHHHHHHhcC-cCCCCCchhhC
Confidence            457899999999999975 99999 9999999984 89999998863

>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1

Probab=98.32  E-value=3e-07  Score=69.38  Aligned_cols=45  Identities=27%  Similarity=0.414  Sum_probs=36.6

Q ss_pred             CeeeccCCCCCCcCce-----------------eeccCCceechhchhhc--------CCCCCCCCCCCc
Q 038068           53 DIFDCPICFEPLTVPV-----------------FQCVNGHLACSDCCAKI--------KRNCPTCSSPTV   97 (269)
Q Consensus        53 ~~l~C~iC~~~l~~Pv-----------------~~c~cgH~fC~~C~~~~--------~~~Cp~C~~~~~   97 (269)
                      .+..|+||++.|..|.                 ...+|||.||..|+..|        ...||+||..+.
T Consensus        24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~   93 (114)
T 1v87_A           24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYG   93 (114)
T ss_dssp             CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSS
T ss_pred             CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccC
Confidence            4469999999997653                 14589999999999988        247999998775

>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A

Probab=98.25  E-value=4.1e-07  Score=61.64  Aligned_cols=45  Identities=33%  Similarity=0.699  Sum_probs=38.5

Q ss_pred             CeeeccCCCCCCcCceee-ccCCce-echhchhhc---CCCCCCCCCCCc
Q 038068           53 DIFDCPICFEPLTVPVFQ-CVNGHL-ACSDCCAKI---KRNCPTCSSPTV   97 (269)
Q Consensus        53 ~~l~C~iC~~~l~~Pv~~-c~cgH~-fC~~C~~~~---~~~Cp~C~~~~~   97 (269)
                      +...|+||++...++++. .+|||. +|..|..++   ...||+||.++.
T Consensus         7 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~   56 (64)
T 2vje_A            7 AIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQ   56 (64)
T ss_dssp             GGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCC
T ss_pred             CcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchh
Confidence            556899999999999852 389999 899999988   457999999875

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=98.20  E-value=5.6e-07  Score=69.31  Aligned_cols=47  Identities=30%  Similarity=0.686  Sum_probs=40.6

Q ss_pred             CCCeeeccCCCCCCcCc-------eeeccCCceechhchhhc---CCCCCCCCCCCcc
Q 038068           51 DQDIFDCPICFEPLTVP-------VFQCVNGHLACSDCCAKI---KRNCPTCSSPTVI   98 (269)
Q Consensus        51 ~~~~l~C~iC~~~l~~P-------v~~c~cgH~fC~~C~~~~---~~~Cp~C~~~~~~   98 (269)
                      +.+.+.|+||++.+..|       + .++|||.||..|+.+|   ...||.||.++..
T Consensus        69 ~~~~~~C~iC~~~~~~~~~~~~~~~-~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~  125 (133)
T 4ap4_A           69 GSGTVSCPICMDGYSEIVQNGRLIV-STECGHVFCSQCLRDSLKNANTCPTCRKKINH  125 (133)
T ss_dssp             SSSSCBCTTTCCBHHHHHHTTCCEE-EETTSBEEEHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred             CCCCCCCCCCCCccccccccCcceE-eCCCCChhhHHHHHHHHHcCCCCCCCCCcCCh
Confidence            44778999999999887       5 5799999999999998   6789999998763

>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*

Probab=98.15  E-value=1e-06  Score=80.11  Aligned_cols=45  Identities=27%  Similarity=0.485  Sum_probs=39.4

Q ss_pred             CeeeccCCCCCCcCceeeccCCceechhchhhc----CCCCCCCCCCCcc
Q 038068           53 DIFDCPICFEPLTVPVFQCVNGHLACSDCCAKI----KRNCPTCSSPTVI   98 (269)
Q Consensus        53 ~~l~C~iC~~~l~~Pv~~c~cgH~fC~~C~~~~----~~~Cp~C~~~~~~   98 (269)
                      ....|+||.+.+..|+. .+|||.||..|+..|    ...||.||.++..
T Consensus       331 ~~~~C~ICle~~~~pv~-lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~  379 (389)
T 2y1n_A          331 TFQLCKICAENDKDVKI-EPCGHLMCTSCLTSWQESEGQGCPFCRCEIKG  379 (389)
T ss_dssp             SSSBCTTTSSSBCCEEE-ETTCCEECHHHHHHHHHHTCSBCTTTCCBCCE
T ss_pred             CCCCCCccCcCCCCeEE-eCCCChhhHHHHHHHHhcCCCCCCCCCCccCC
Confidence            44799999999999985 599999999999987    4689999998764

>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*

Probab=98.14  E-value=8.6e-07  Score=59.85  Aligned_cols=45  Identities=22%  Similarity=0.570  Sum_probs=37.5

Q ss_pred             CeeeccCCCCCCcCcee-eccCCce-echhchhhc---CCCCCCCCCCCc
Q 038068           53 DIFDCPICFEPLTVPVF-QCVNGHL-ACSDCCAKI---KRNCPTCSSPTV   97 (269)
Q Consensus        53 ~~l~C~iC~~~l~~Pv~-~c~cgH~-fC~~C~~~~---~~~Cp~C~~~~~   97 (269)
                      ....|+||++...++++ ..+|||. +|..|..++   ...||+||.++.
T Consensus         6 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~   55 (63)
T 2vje_B            6 LLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQ   55 (63)
T ss_dssp             GGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCC
T ss_pred             cCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhh
Confidence            34589999999998864 2389998 999999988   358999999875

>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B

Probab=98.13  E-value=1.2e-06  Score=78.77  Aligned_cols=44  Identities=30%  Similarity=0.742  Sum_probs=39.9

Q ss_pred             CeeeccCCCCCCcCceeeccCCce-echhchhhcCCCCCCCCCCCcc
Q 038068           53 DIFDCPICFEPLTVPVFQCVNGHL-ACSDCCAKIKRNCPTCSSPTVI   98 (269)
Q Consensus        53 ~~l~C~iC~~~l~~Pv~~c~cgH~-fC~~C~~~~~~~Cp~C~~~~~~   98 (269)
                      +.+.|+||++.+..|++. +|||. ||..|+..+ ..||.||.++..
T Consensus       294 ~~~~C~IC~~~~~~~v~l-pCgH~~fC~~C~~~~-~~CP~CR~~i~~  338 (345)
T 3t6p_A          294 EERTCKVCMDKEVSVVFI-PCGHLVVCQECAPSL-RKCPICRGIIKG  338 (345)
T ss_dssp             TTCBCTTTSSSBCCEEEE-TTCCEEECTTTGGGC-SBCTTTCCBCCE
T ss_pred             CCCCCCccCCcCCceEEc-CCCChhHhHHHHhcC-CcCCCCCCCccC
Confidence            568999999999999975 99999 999999998 689999998763

>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A

Probab=98.10  E-value=1.9e-06  Score=64.36  Aligned_cols=46  Identities=20%  Similarity=0.297  Sum_probs=38.4

Q ss_pred             CeeeccCCCCCCcCc-----------------eeeccCCceechhchhhc---CCCCCCCCCCCcc
Q 038068           53 DIFDCPICFEPLTVP-----------------VFQCVNGHLACSDCCAKI---KRNCPTCSSPTVI   98 (269)
Q Consensus        53 ~~l~C~iC~~~l~~P-----------------v~~c~cgH~fC~~C~~~~---~~~Cp~C~~~~~~   98 (269)
                      ++-.|+||++.+..+                 +...+|||.|+..|+.+|   ...||+||..+..
T Consensus        36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~~  101 (106)
T 3dpl_R           36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEF  101 (106)
T ss_dssp             CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBCCE
T ss_pred             CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcCCCCccee
Confidence            556899999998865                 445689999999999998   5689999998653

>2yuc_A TNF receptor-associated factor 4; ZF-TRAF, cysteine-rich domain associated with ring and TRAF domains protein 1, malignant 62; NMR {Homo sapiens}

Probab=98.03  E-value=3.1e-06  Score=59.13  Aligned_cols=60  Identities=18%  Similarity=0.341  Sum_probs=49.6

Q ss_pred             HhhcceecccCCCCCccccccccchhhhhc-cCCCeeeeCCCCCCCCccChhHHhhhhhhhCCCCcc
Q 038068          107 VIELVQVNCKNAEYGCQQKMSFSKKRGHEK-TCQHSPLPCPLSDCSFLGCSSQFVRHFMAKHNISAV  172 (269)
Q Consensus       107 ~i~~l~v~C~~~~~GC~~~~~~~~~~~He~-~C~~~p~~Cp~~~C~~~g~~~~l~~Hl~~~H~~~~~  172 (269)
                      ......|.||+   +|...+...++++|+. +|+++++.|++  |+..+.+.+|..|. ..+....+
T Consensus        11 ~C~~~~v~C~~---~C~~~v~r~~l~~H~~~~C~~r~v~C~~--C~~~~~~~~l~~H~-~~Cp~~~v   71 (76)
T 2yuc_A           11 TCSFNVIPCPN---RCPMKLSRRDLPAHLQHDCPKRRLKCEF--CGCDFSGEAYESHE-GMCPQESS   71 (76)
T ss_dssp             CCCCSCCBCTT---CCSCBCCSSSSTTTTTTSCTTSCCCCSS--SCCCCCHHHHHHTT-TSCTTSSC
T ss_pred             HCCCcccCCCc---cccHHhhHhHHHhhCHhhCCCcceECCC--CCCccCHHHHHHHH-hHCCCCcc
Confidence            34456788986   7999999999999988 89999999996  99999999999998 44554433

>2yre_A F-box only protein 30; zinc binding, E3 ubiquitin ligase, SCF, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.02  E-value=2.2e-06  Score=62.57  Aligned_cols=51  Identities=22%  Similarity=0.456  Sum_probs=39.4

Q ss_pred             eecccCCCCCccccccccchhhhhccCCCeeeeCCCC--CCCCccChhHHhhhhhh
Q 038068          112 QVNCKNAEYGCQQKMSFSKKRGHEKTCQHSPLPCPLS--DCSFLGCSSQFVRHFMA  165 (269)
Q Consensus       112 ~v~C~~~~~GC~~~~~~~~~~~He~~C~~~p~~Cp~~--~C~~~g~~~~l~~Hl~~  165 (269)
                      .+.|||   .|...+...++++|...|+.+.+.|++.  ||.+++.+.+|.+|++.
T Consensus        37 ~i~CP~---~Cga~i~rckL~EH~~~CP~a~v~C~~~~yGCp~~~~R~~L~~He~~   89 (100)
T 2yre_A           37 LIGCPL---VCGAVFHSCKADEHRLLCPFERVPCLNSDFGCPFTMARNKVAEHLEM   89 (100)
T ss_dssp             EEECTT---CCSCEEEHHHHHHHHHHCSSSEEECTTTTTTCCCEEESSTHHHHHHT
T ss_pred             eeeCCc---ccCCeeehhhHHHHHhhcccccccccccCcCCceeecHHHHHHHHhh
Confidence            677876   4777777778888887788888888875  78888888888888763

>2yre_A F-box only protein 30; zinc binding, E3 ubiquitin ligase, SCF, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.01  E-value=2.2e-06  Score=62.60  Aligned_cols=59  Identities=22%  Similarity=0.404  Sum_probs=46.3

Q ss_pred             CCC-CCCCCCccccchhHHHHhhcceecccCCCCCccccccccchhhhhccCCCeeeeCC
Q 038068           88 NCP-TCSSPTVIVRNWAIEKVIELVQVNCKNAEYGCQQKMSFSKKRGHEKTCQHSPLPCP  146 (269)
Q Consensus        88 ~Cp-~C~~~~~~~~~~~l~~~i~~l~v~C~~~~~GC~~~~~~~~~~~He~~C~~~p~~Cp  146 (269)
                      .|| .|...+-...-.....+.....++|+|+.|||..++...+|..|++.|+-+.+.|.
T Consensus        39 ~CP~~Cga~i~rckL~EH~~~CP~a~v~C~~~~yGCp~~~~R~~L~~He~~CPas~v~~~   98 (100)
T 2yre_A           39 GCPLVCGAVFHSCKADEHRLLCPFERVPCLNSDFGCPFTMARNKVAEHLEMCPASVSGPS   98 (100)
T ss_dssp             ECTTCCSCEEEHHHHHHHHHHCSSSEEECTTTTTTCCCEEESSTHHHHHHTCGGGCCCCC
T ss_pred             eCCcccCCeeehhhHHHHHhhcccccccccccCcCCceeecHHHHHHHHhhCCceeEecC
Confidence            477 67663332222334456788899999999999999999999999999999888775

>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A

Probab=98.00  E-value=2.8e-06  Score=56.98  Aligned_cols=43  Identities=16%  Similarity=0.161  Sum_probs=37.8

Q ss_pred             eeeccCCCCCCcCceeec-cCCceechhchhhc---CCCCCCCCCCCc
Q 038068           54 IFDCPICFEPLTVPVFQC-VNGHLACSDCCAKI---KRNCPTCSSPTV   97 (269)
Q Consensus        54 ~l~C~iC~~~l~~Pv~~c-~cgH~fC~~C~~~~---~~~Cp~C~~~~~   97 (269)
                      .+.|||+++++.+||. . .+||+|+..|+.+|   ...||..+.++.
T Consensus         3 ~~~CpIs~~~m~dPV~-~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~   49 (61)
T 2bay_A            3 HMLCAISGKVPRRPVL-SPKSRTIFEKSLLEQYVKDTGNDPITNEPLS   49 (61)
T ss_dssp             -CCCTTTCSCCSSEEE-ETTTTEEEEHHHHHHHHHHHSBCTTTCCBCC
T ss_pred             eEEecCCCCCCCCCEE-eCCCCcEEcHHHHHHHHHhCCCCcCCcCCCC
Confidence            4789999999999985 6 89999999999999   457999998876

>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=97.95  E-value=2.6e-06  Score=62.09  Aligned_cols=43  Identities=19%  Similarity=0.531  Sum_probs=34.2

Q ss_pred             CeeeccCCCCCCcCceee--ccCCceechhchhhc-----------CCCCCC--CCCC
Q 038068           53 DIFDCPICFEPLTVPVFQ--CVNGHLACSDCCAKI-----------KRNCPT--CSSP   95 (269)
Q Consensus        53 ~~l~C~iC~~~l~~Pv~~--c~cgH~fC~~C~~~~-----------~~~Cp~--C~~~   95 (269)
                      +.+.|+||++.+..|...  .+|||.||..|+...           ...||.  |+..
T Consensus         4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~   61 (94)
T 1wim_A            4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ   61 (94)
T ss_dssp             SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred             CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence            568999999999988643  269999999998765           125888  8776

>2yuc_A TNF receptor-associated factor 4; ZF-TRAF, cysteine-rich domain associated with ring and TRAF domains protein 1, malignant 62; NMR {Homo sapiens}

Probab=97.92  E-value=1.8e-06  Score=60.34  Aligned_cols=51  Identities=20%  Similarity=0.398  Sum_probs=46.0

Q ss_pred             ccchhhhhccCCCeeeeCCCCCCCCccChhHHhhhhhhhCCCCccceeecce
Q 038068          128 FSKKRGHEKTCQHSPLPCPLSDCSFLGCSSQFVRHFMAKHNISAVPFKYNSL  179 (269)
Q Consensus       128 ~~~~~~He~~C~~~p~~Cp~~~C~~~g~~~~l~~Hl~~~H~~~~~~~~~~~~  179 (269)
                      ..+++.|+..|+|+++.||+ +|+..+.+.+|.+|+...+....+.+.|+..
T Consensus         2 ~~~l~~H~~~C~~~~v~C~~-~C~~~v~r~~l~~H~~~~C~~r~v~C~~C~~   52 (76)
T 2yuc_A            2 SSGSSGHLNTCSFNVIPCPN-RCPMKLSRRDLPAHLQHDCPKRRLKCEFCGC   52 (76)
T ss_dssp             CCSCSCCCCCCCCSCCBCTT-CCSCBCCSSSSTTTTTTSCTTSCCCCSSSCC
T ss_pred             chHHHHHHHHCCCcccCCCc-cccHHhhHhHHHhhCHhhCCCcceECCCCCC
Confidence            35788999999999999997 8999999999999999899999999988753

>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}

Probab=97.79  E-value=3.6e-06  Score=63.97  Aligned_cols=45  Identities=20%  Similarity=0.296  Sum_probs=1.0

Q ss_pred             CeeeccCCCCCCcCc-----------------eeeccCCceechhchhhc---CCCCCCCCCCCc
Q 038068           53 DIFDCPICFEPLTVP-----------------VFQCVNGHLACSDCCAKI---KRNCPTCSSPTV   97 (269)
Q Consensus        53 ~~l~C~iC~~~l~~P-----------------v~~c~cgH~fC~~C~~~~---~~~Cp~C~~~~~   97 (269)
                      ++-.|+||++.+..+                 +...+|+|.|+..|+.+|   ...||+||.++.
T Consensus        47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~  111 (117)
T 4a0k_B           47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE  111 (117)
T ss_dssp             CC---------------------------------------------------------------
T ss_pred             CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCeee
Confidence            456899999999764                 323479999999999998   568999998764

>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}

Probab=97.75  E-value=3.8e-05  Score=55.90  Aligned_cols=82  Identities=21%  Similarity=0.359  Sum_probs=58.4

Q ss_pred             eccCCCCCCcCceeeccCCceechhchhhc----CCCCCCCCCCCccccchhHHHHhhcceecccCCCCCccccccccch
Q 038068           56 DCPICFEPLTVPVFQCVNGHLACSDCCAKI----KRNCPTCSSPTVIVRNWAIEKVIELVQVNCKNAEYGCQQKMSFSKK  131 (269)
Q Consensus        56 ~C~iC~~~l~~Pv~~c~cgH~fC~~C~~~~----~~~Cp~C~~~~~~~~~~~l~~~i~~l~v~C~~~~~GC~~~~~~~~~  131 (269)
                      .|++|.-|+..-...-+|.|+||.+|...+    ...||.|+.++.......     ..-.+-|+.              
T Consensus         3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~rVe~~~-----~~~if~C~~--------------   63 (101)
T 3vk6_A            3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQRIEQCT-----RGSLFMCSI--------------   63 (101)
T ss_dssp             BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSEEEEEE-----GGGCCCCCC--------------
T ss_pred             ecCccCCCeEEEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeeeeEEec-----cCCEEECCC--------------
Confidence            599999999877667799999999999876    367999999876443221     122233431              


Q ss_pred             hhhhccCCCeeeeCCCCCCCCc-cChhHHhhhhhhhCCCCc
Q 038068          132 RGHEKTCQHSPLPCPLSDCSFL-GCSSQFVRHFMAKHNISA  171 (269)
Q Consensus       132 ~~He~~C~~~p~~Cp~~~C~~~-g~~~~l~~Hl~~~H~~~~  171 (269)
                                     .++|.-. .+..+|+.|+...|....
T Consensus        64 ---------------~~~CkrtyLs~rdlqaHI~~~H~~~~   89 (101)
T 3vk6_A           64 ---------------VQGCKRTYLSQRDLQAHINHRHMRAG   89 (101)
T ss_dssp             ---------------CCCCCCCCSSHHHHHHHHHHHTTTSC
T ss_pred             ---------------CCCHHHHhcCHHHHHHHHHHHhhhcC
Confidence                           3466644 467899999999997643

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=97.53  E-value=4.9e-05  Score=61.22  Aligned_cols=101  Identities=17%  Similarity=0.238  Sum_probs=67.5

Q ss_pred             eccCCCCCCcCceeeccCCceechhchhhcCCCCC--CCCCCCccccchhHHHHhhcceecccCCCCCccccccccchhh
Q 038068           56 DCPICFEPLTVPVFQCVNGHLACSDCCAKIKRNCP--TCSSPTVIVRNWAIEKVIELVQVNCKNAEYGCQQKMSFSKKRG  133 (269)
Q Consensus        56 ~C~iC~~~l~~Pv~~c~cgH~fC~~C~~~~~~~Cp--~C~~~~~~~~~~~l~~~i~~l~v~C~~~~~GC~~~~~~~~~~~  133 (269)
                      .||+|...+...-.. +.  .+-..=+..+...||  .|...+....-...++...-..+.||    ||.+.+...++..
T Consensus        55 ~CP~Cr~~~~~~~~~-~~--~~~~~~i~~l~v~C~n~GC~~~~~~~~l~~H~~~C~~~~v~C~----~C~~~~~r~~l~~  127 (170)
T 3hcs_A           55 KCPVDNEILLENQLF-PD--NFAKREILSLMVKCPNEGCLHKMELRHLEDHQAHCEFALMDCP----QCQRPFQKFHINI  127 (170)
T ss_dssp             BCTTTCCBCCGGGCE-EC--HHHHHHHHTSEEECCSTTCCCEEEGGGHHHHHTTCTTSEEECT----TTCCEEEGGGHHH
T ss_pred             CCCCCccCcchhhhh-hh--HHHHHHHhhcccCCCCCCCCceecHhHHHHHHhcCCceeeECC----CCChHHHHHHHHH
Confidence            788888776543100 00  000011111233564  46655443332334455666788997    8999999999999


Q ss_pred             hh-ccCCCeeeeCCCCCCCCccChhHHhhhhhh
Q 038068          134 HE-KTCQHSPLPCPLSDCSFLGCSSQFVRHFMA  165 (269)
Q Consensus       134 He-~~C~~~p~~Cp~~~C~~~g~~~~l~~Hl~~  165 (269)
                      |+ ..|+++++.|+  .|+......+|..|...
T Consensus       128 H~~~~C~~r~~~C~--~C~~~~~~~~l~~H~~~  158 (170)
T 3hcs_A          128 HILKDCPRRQVSCD--NCAASMAFEDKEIHDQN  158 (170)
T ss_dssp             HHHHTCTTCEEECT--TTCCEEEGGGHHHHHTT
T ss_pred             HhhhhCCCCCeECC--CCCCccCHHHHHhHHHh
Confidence            98 69999999999  59999999999999754

>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.02  E-value=0.00068  Score=47.71  Aligned_cols=44  Identities=20%  Similarity=0.389  Sum_probs=34.9

Q ss_pred             CeeeccCCCCCC--cCceeeccCC-----ceechhchhhc---C--CCCCCCCCCCc
Q 038068           53 DIFDCPICFEPL--TVPVFQCVNG-----HLACSDCCAKI---K--RNCPTCSSPTV   97 (269)
Q Consensus        53 ~~l~C~iC~~~l--~~Pv~~c~cg-----H~fC~~C~~~~---~--~~Cp~C~~~~~   97 (269)
                      +...|.||++.+  ..++. .+|.     |.|-..|+.+|   +  ..||+|+..+.
T Consensus        14 ~~~~C~IC~~~~~~~~~l~-~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~   69 (80)
T 2d8s_A           14 SQDICRICHCEGDDESPLI-TPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFI   69 (80)
T ss_dssp             TSCCCSSSCCCCCSSSCEE-CSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCC
T ss_pred             CCCCCeEcCccccCCCeeE-eccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeee
Confidence            456899999866  35664 4775     99999999999   2  48999999875

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.89  E-value=0.00016  Score=50.11  Aligned_cols=52  Identities=21%  Similarity=0.316  Sum_probs=43.9

Q ss_pred             hcceecccCCCCCccccccccchhhhhccCCCeeeeCCCCCCCCccChhHHhhhhhhh
Q 038068          109 ELVQVNCKNAEYGCQQKMSFSKKRGHEKTCQHSPLPCPLSDCSFLGCSSQFVRHFMAK  166 (269)
Q Consensus       109 ~~l~v~C~~~~~GC~~~~~~~~~~~He~~C~~~p~~Cp~~~C~~~g~~~~l~~Hl~~~  166 (269)
                      ...++.|++    |...+...+|..|+..|+.+|+.|+.  |+....+.+|..|....
T Consensus        14 ~~r~~~C~~----C~~~~~~~~L~~H~~~c~~~~~~C~~--C~~~~~~~~l~~H~~~c   65 (75)
T 2d9k_A           14 PLRLAVCQH----CDLELSILKLKEHEDYCGARTELCGN--CGRNVLVKDLKTHPEVC   65 (75)
T ss_dssp             CCCCEECSS----SCCEECHHHHHHHHHHHHHCEEECSS--SCCEEETTGGGTHHHHB
T ss_pred             CCcccCCcc----cChHhhHHHHHHHHhHcCCCceEccc--CCCcCcHHHHHHHHHHc
Confidence            345677774    88899999999999899999999995  99888889999998653

>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.57  E-value=0.0042  Score=42.95  Aligned_cols=44  Identities=27%  Similarity=0.498  Sum_probs=36.9

Q ss_pred             CeeeccCCCCCCcCceeec-cCCceechhchhhc---C--CCCCCCCCCCc
Q 038068           53 DIFDCPICFEPLTVPVFQC-VNGHLACSDCCAKI---K--RNCPTCSSPTV   97 (269)
Q Consensus        53 ~~l~C~iC~~~l~~Pv~~c-~cgH~fC~~C~~~~---~--~~Cp~C~~~~~   97 (269)
                      ..-.|.||.+++.+-+ .| .|+|.|=..|+.+|   .  ..||.|+.++.
T Consensus        14 ~i~~C~IC~~~i~~g~-~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~   63 (74)
T 2ct0_A           14 AVKICNICHSLLIQGQ-SCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP   63 (74)
T ss_dssp             SSCBCSSSCCBCSSSE-ECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCC
T ss_pred             CCCcCcchhhHcccCC-ccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCC
Confidence            4468999999998665 56 69999999999998   3  67999998765

>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}

Probab=95.91  E-value=0.0031  Score=56.09  Aligned_cols=45  Identities=22%  Similarity=0.501  Sum_probs=37.2

Q ss_pred             CeeeccCCCCCCcC----ceeec---cCCceechhchhhc----C----------CCCCCCCCCCc
Q 038068           53 DIFDCPICFEPLTV----PVFQC---VNGHLACSDCCAKI----K----------RNCPTCSSPTV   97 (269)
Q Consensus        53 ~~l~C~iC~~~l~~----Pv~~c---~cgH~fC~~C~~~~----~----------~~Cp~C~~~~~   97 (269)
                      ..-.|+||++.+.+    |-..|   .|||.|=..|+.+|    .          ..||.|+.++.
T Consensus       307 ~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs  372 (381)
T 3k1l_B          307 EELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS  372 (381)
T ss_dssp             SCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred             CCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence            45689999999876    65556   59999999999998    1          46999999876

>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}

Probab=95.04  E-value=0.012  Score=42.80  Aligned_cols=32  Identities=22%  Similarity=0.502  Sum_probs=26.8

Q ss_pred             CeeeccCCCC-CCcCceeec-cCCceechhchhh
Q 038068           53 DIFDCPICFE-PLTVPVFQC-VNGHLACSDCCAK   84 (269)
Q Consensus        53 ~~l~C~iC~~-~l~~Pv~~c-~cgH~fC~~C~~~   84 (269)
                      +++.|++|.+ ++.+|+..| .|+|.||..|+..
T Consensus         2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~   35 (101)
T 2jun_A            2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKA   35 (101)
T ss_dssp             CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHH
T ss_pred             CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHH
Confidence            4578999996 478888654 6999999999997

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=94.10  E-value=0.0094  Score=40.89  Aligned_cols=48  Identities=17%  Similarity=0.169  Sum_probs=38.7

Q ss_pred             cchhhhhc-cCCCeeeeCCCCCCCCccChhHHhhhhhhhCCCCccceeecce
Q 038068          129 SKKRGHEK-TCQHSPLPCPLSDCSFLGCSSQFVRHFMAKHNISAVPFKYNSL  179 (269)
Q Consensus       129 ~~~~~He~-~C~~~p~~Cp~~~C~~~g~~~~l~~Hl~~~H~~~~~~~~~~~~  179 (269)
                      .+|..|+. .|+++|+.|++  |+......+|..|. .......+.+.++..
T Consensus         3 ~~L~~H~~~~c~~r~~~C~~--C~~~~~~~~L~~H~-~~c~~~~~~C~~C~~   51 (75)
T 2d9k_A            3 SGSSGHEETECPLRLAVCQH--CDLELSILKLKEHE-DYCGARTELCGNCGR   51 (75)
T ss_dssp             CCCSCCCCCCCCCCCEECSS--SCCEECHHHHHHHH-HHHHHCEEECSSSCC
T ss_pred             hHHHhhCcccCCCcccCCcc--cChHhhHHHHHHHH-hHcCCCceEcccCCC
Confidence            46789986 79999999995  99999999999998 556666666666643

>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A

Probab=93.06  E-value=0.034  Score=41.52  Aligned_cols=63  Identities=13%  Similarity=0.054  Sum_probs=40.5

Q ss_pred             hHHHHhhcceecccCCCCCccccccccchhhh---hccCCCeeeeCCCCCCCCccChhHHhhhhhhhCCC
Q 038068          103 AIEKVIELVQVNCKNAEYGCQQKMSFSKKRGH---EKTCQHSPLPCPLSDCSFLGCSSQFVRHFMAKHNI  169 (269)
Q Consensus       103 ~l~~~i~~l~v~C~~~~~GC~~~~~~~~~~~H---e~~C~~~p~~Cp~~~C~~~g~~~~l~~Hl~~~H~~  169 (269)
                      .+.+.+..-...||.    |...+...++..-   ++.=.-..+.||+.||+|.+...+|.+|+...+..
T Consensus        44 Ci~~~~~~~~~~CP~----Cr~~~~~~~~~~~~~l~~~i~~l~v~C~n~gC~~~~~~~~l~~H~~~c~~~  109 (118)
T 3hct_A           44 CIIKSIRDAGHKCPV----DNEILLENQLFPDNFAKREILSLMVKCPNEGCLHKMELRHLEDHQAHCEFA  109 (118)
T ss_dssp             HHHHHHHHHCSBCTT----TCCBCCGGGCEECHHHHHHHHTSEEECSSTTCCCEEEGGGSGGGTSSSCC-
T ss_pred             HHHHHHhhCCCCCCC----CCCCcCHHhcccCHHHHHHHccceeECCCCCCCCEEeeHHHHHHHHHchhh
Confidence            345555544458985    7666554332100   11122357899988999999999999999877654

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=92.79  E-value=0.093  Score=34.24  Aligned_cols=53  Identities=21%  Similarity=0.528  Sum_probs=37.0

Q ss_pred             ceecccCCCCCccccccccchhhhhccCCCeeeeCCCCCCCCc-cChhHHhhhhhhhCC
Q 038068          111 VQVNCKNAEYGCQQKMSFSKKRGHEKTCQHSPLPCPLSDCSFL-GCSSQFVRHFMAKHN  168 (269)
Q Consensus       111 l~v~C~~~~~GC~~~~~~~~~~~He~~C~~~p~~Cp~~~C~~~-g~~~~l~~Hl~~~H~  168 (269)
                      -++.|+.    |...+....|..|++.+.-+|+.|++ .|+.. ..+..|..|.+....
T Consensus         9 ~~~~C~~----C~k~f~~~~L~~H~~~~~~~p~~C~~-~C~k~f~~~~~L~~H~~~hc~   62 (66)
T 2eod_A            9 RTQPCTY----CTKEFVFDTIQSHQYQCPRLPVACPN-QCGVGTVAREDLPGHLKDSCN   62 (66)
T ss_dssp             CEEECSS----SCCEEEHHHHHHHHHHCSSSEEECTT-CCSCCEEETTTHHHHHHTTSS
T ss_pred             CCeeccc----cCCccCHHHHHHHHHHcCCcCccCCc-ccCcccccHHHHHHHHHhhcc
Confidence            3456653    66666666788887778888999983 48865 345688899876443

>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1

Probab=91.36  E-value=0.16  Score=37.57  Aligned_cols=76  Identities=13%  Similarity=0.271  Sum_probs=47.6

Q ss_pred             CCCCCCCCCCcc---------ccchhHHHHhhcceecccCCCCCccccccccchh----hhhccCCCeeeeCCCCCCCCc
Q 038068           87 RNCPTCSSPTVI---------VRNWAIEKVIELVQVNCKNAEYGCQQKMSFSKKR----GHEKTCQHSPLPCPLSDCSFL  153 (269)
Q Consensus        87 ~~Cp~C~~~~~~---------~~~~~l~~~i~~l~v~C~~~~~GC~~~~~~~~~~----~He~~C~~~p~~Cp~~~C~~~  153 (269)
                      ..||+|...+..         +-..-+.+.+......||.    |...+...++.    .-.+.=....+.||+.||+|.
T Consensus        24 ~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~----Cr~~~~~~~~~~~~~~l~~~i~~l~v~C~~~gC~~~   99 (116)
T 1rmd_A           24 ISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPS----CRYPCFPTDLESPVKSFLNILNSLMVKCPAQDCNEE   99 (116)
T ss_dssp             TBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTT----TCCBCCGGGCBCCCHHHHHHHHHCEEECCSTTCCCE
T ss_pred             CCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhHCcCcCCC----CCCCCCHhhccccHHHHHHHHHHhcCCCCCCCCcch
Confidence            468888765531         1113355555544567885    77666554432    112222334688998999999


Q ss_pred             cChhHHhhhhhhh
Q 038068          154 GCSSQFVRHFMAK  166 (269)
Q Consensus       154 g~~~~l~~Hl~~~  166 (269)
                      +...++..|+...
T Consensus       100 ~~~~~~~~H~~~C  112 (116)
T 1rmd_A          100 VSLEKYNHHVSSH  112 (116)
T ss_dssp             EEHHHHHHHHHTS
T ss_pred             hhHhHHHHHHHHh
Confidence            9999999999653

>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3

Probab=90.48  E-value=0.76  Score=31.73  Aligned_cols=33  Identities=30%  Similarity=0.598  Sum_probs=26.9

Q ss_pred             CeeeccCCCCCCcCc-eeecc--CCceechhchhhc
Q 038068           53 DIFDCPICFEPLTVP-VFQCV--NGHLACSDCCAKI   85 (269)
Q Consensus        53 ~~l~C~iC~~~l~~P-v~~c~--cgH~fC~~C~~~~   85 (269)
                      ..|.|.+|.+-|.+. ..||+  -+|.||-.|....
T Consensus        14 a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~s   49 (93)
T 2cs3_A           14 GPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRES   49 (93)
T ss_dssp             CSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHH
T ss_pred             CeeEeecchhhhccCceeeCCCccCCeeeccccHHH
Confidence            679999999999877 44786  5799999997553

>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3

Probab=87.21  E-value=0.39  Score=31.34  Aligned_cols=44  Identities=23%  Similarity=0.330  Sum_probs=30.9

Q ss_pred             CeeeccCCCCCCcCceeecc--CCc---eechhchhhc-----CCCCCCCCCCCc
Q 038068           53 DIFDCPICFEPLTVPVFQCV--NGH---LACSDCCAKI-----KRNCPTCSSPTV   97 (269)
Q Consensus        53 ~~l~C~iC~~~l~~Pv~~c~--cgH---~fC~~C~~~~-----~~~Cp~C~~~~~   97 (269)
                      +.-.|.||++-..+++. .+  |.+   .|=..|+.+|     ...||+|+..+.
T Consensus         5 ~~~~CrIC~~~~~~~l~-~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~   58 (60)
T 1vyx_A            5 DVPVCWICNEELGNERF-RACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN   58 (60)
T ss_dssp             SCCEETTTTEECSCCCC-CSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred             CCCEeEEeecCCCCcee-cCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence            45689999876655552 35  434   5556799998     367999998764

>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4

Probab=86.92  E-value=0.85  Score=31.92  Aligned_cols=33  Identities=15%  Similarity=0.273  Sum_probs=23.9

Q ss_pred             CeeeccCCCCCCc----Cceeecc-CCceechhchhhc
Q 038068           53 DIFDCPICFEPLT----VPVFQCV-NGHLACSDCCAKI   85 (269)
Q Consensus        53 ~~l~C~iC~~~l~----~Pv~~c~-cgH~fC~~C~~~~   85 (269)
                      ...-||-|..++.    .+..+|+ ||+.||..|...|
T Consensus        24 ~~~wCP~C~~~~~~~~~~~~v~C~~C~~~FC~~C~~~w   61 (86)
T 2ct7_A           24 KFLWCAQCSFGFIYEREQLEATCPQCHQTFCVRCKRQW   61 (86)
T ss_dssp             CEECCSSSCCCEECCCSCSCEECTTTCCEECSSSCSBC
T ss_pred             CEeECcCCCchheecCCCCceEeCCCCCccccccCCch
Confidence            4445998887553    2223686 9999999999877

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=86.66  E-value=0.61  Score=36.90  Aligned_cols=84  Identities=18%  Similarity=0.328  Sum_probs=44.6

Q ss_pred             CCCCCCCCCccccch--hHHHHhhcceecccCCCCCccccccc-cchhhhhcc-CCCeeeeCCCCCCCCccC-hhHHhhh
Q 038068           88 NCPTCSSPTVIVRNW--AIEKVIELVQVNCKNAEYGCQQKMSF-SKKRGHEKT-CQHSPLPCPLSDCSFLGC-SSQFVRH  162 (269)
Q Consensus        88 ~Cp~C~~~~~~~~~~--~l~~~i~~l~v~C~~~~~GC~~~~~~-~~~~~He~~-C~~~p~~Cp~~~C~~~g~-~~~l~~H  162 (269)
                      .|+.|...+....+.  -+..-...-.+.|+.    |...+.. ..|..|++. -.-.++.|+  .|+.... ...|..|
T Consensus        79 ~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~----C~~~f~~~~~l~~H~~~h~~~~~~~C~--~C~~~f~~~~~L~~H  152 (190)
T 2i13_A           79 KCPECGKSFSQRANLRAHQRTHTGEKPYACPE----CGKSFSQLAHLRAHQRTHTGEKPYKCP--ECGKSFSREDNLHTH  152 (190)
T ss_dssp             ECTTTCCEESCHHHHHHHHHHHHTCCCEECTT----TCCEESSHHHHHHHHHHHHCCCCEECT--TTCCEESCHHHHHHH
T ss_pred             cCcccCCccCCHHHHHHHHHhcCCCCCCcCCC----CCCccCCHHHHHHHHHHhCCCCCeECC--CCCcccCCHHHHHHH
Confidence            577776655432111  111222344566763    6665543 456666543 234567777  3776543 4577788


Q ss_pred             hhhhCCCCccceeec
Q 038068          163 FMAKHNISAVPFKYN  177 (269)
Q Consensus       163 l~~~H~~~~~~~~~~  177 (269)
                      +...+......+.++
T Consensus       153 ~~~H~~~~~~~C~~C  167 (190)
T 2i13_A          153 QRTHTGEKPYKCPEC  167 (190)
T ss_dssp             HHHHHCCCCEECTTT
T ss_pred             HHhcCCCCCeECCCC
Confidence            776665544444433

>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3

Probab=86.45  E-value=0.49  Score=33.79  Aligned_cols=45  Identities=24%  Similarity=0.696  Sum_probs=36.8

Q ss_pred             CeeeccCCCCCCcCceeeccCCceechhchhhc-CCCCCCCCCCCc
Q 038068           53 DIFDCPICFEPLTVPVFQCVNGHLACSDCCAKI-KRNCPTCSSPTV   97 (269)
Q Consensus        53 ~~l~C~iC~~~l~~Pv~~c~cgH~fC~~C~~~~-~~~Cp~C~~~~~   97 (269)
                      +=|.|..|..+|....+.-.-|..+|..|..+. ...|..|..+|.
T Consensus        32 ~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~~~C~~C~~~I~   77 (101)
T 2cup_A           32 TCFRCAKCLHPLANETFVAKDNKILCNKCTTREDSPKCKGCFKAIV   77 (101)
T ss_dssp             TTCCCSSSCCCTTSSCCEEETTEEECHHHHTTCCCCBCSSSCCBCC
T ss_pred             cCCcccccCCCCCcCeeECcCCEEEChhHhhhhcCCccccCCCccc
Confidence            568899999999765444468999999999877 678999988775

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=86.04  E-value=0.57  Score=32.31  Aligned_cols=54  Identities=15%  Similarity=0.244  Sum_probs=36.0

Q ss_pred             ceecccCCCCCccccccc-cchhhhhccCCC---eeeeCCCCCCCCcc-ChhHHhhhhhhhCCCC
Q 038068          111 VQVNCKNAEYGCQQKMSF-SKKRGHEKTCQH---SPLPCPLSDCSFLG-CSSQFVRHFMAKHNIS  170 (269)
Q Consensus       111 l~v~C~~~~~GC~~~~~~-~~~~~He~~C~~---~p~~Cp~~~C~~~g-~~~~l~~Hl~~~H~~~  170 (269)
                      ..+.|+.    |...+.. ..|..|+..-.-   .++.|+.  |+... ....|..|++..|..+
T Consensus        34 ~~~~C~~----C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~--C~~~f~~~~~L~~H~~~~H~~~   92 (95)
T 2yt9_A           34 KPYSCPV----CGLRFKRKDRMSYHVRSHDGSVGKPYICQS--CGKGFSRPDHLNGHIKQVHSGP   92 (95)
T ss_dssp             CSEECSS----SCCEESCHHHHHHHHHHHCCCCCSSBCCSS--SCCCBSSHHHHHHHHHHTSCCC
T ss_pred             CCCcCCC----CCCccCCHHHHHHHHHHhcCCCCCceECCC--ccchhCCHHHHHHHHHHhcCCC
Confidence            3456663    6655543 466777654332   6788984  98765 4578999999888754

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=86.02  E-value=1.1  Score=32.34  Aligned_cols=108  Identities=18%  Similarity=0.297  Sum_probs=64.9

Q ss_pred             CeeeccCCCCCCcCceeeccCCceechhchhhcCCCCCCCCCCCccccchhHHHH-----hhcceecccCCCCCcccccc
Q 038068           53 DIFDCPICFEPLTVPVFQCVNGHLACSDCCAKIKRNCPTCSSPTVIVRNWAIEKV-----IELVQVNCKNAEYGCQQKMS  127 (269)
Q Consensus        53 ~~l~C~iC~~~l~~Pv~~c~cgH~fC~~C~~~~~~~Cp~C~~~~~~~~~~~l~~~-----i~~l~v~C~~~~~GC~~~~~  127 (269)
                      ..+.|++|...|.....+  -.|.-  .-...-...|+.|...+........-..     .....+.|+.    |...+.
T Consensus         6 ~~~~C~~C~~~f~~~~~l--~~H~~--~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~C~~----C~~~f~   77 (124)
T 2dlq_A            6 SGVECPTCHKKFLSKYYL--KVHNR--KHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSV----CQETFR   77 (124)
T ss_dssp             SSCCCTTTCCCCSSHHHH--HHHHH--HHSSCCSCBCTTTCCBCSSHHHHHHHHHHCCCCSCCCCEECSS----SCCEES
T ss_pred             CCCCCCCCCCcCCCHHHH--HHHHH--hCCCCCCeECCCCCchhcCHHHHHHHHhhhhcCCCCCCeECCC----CCCccC
Confidence            457899998888765321  12321  0000113579999877653322211111     2344577874    877665


Q ss_pred             c-cchhhhhcc-CCCeeeeCCCCCCCCcc-ChhHHhhhhhhhCCCC
Q 038068          128 F-SKKRGHEKT-CQHSPLPCPLSDCSFLG-CSSQFVRHFMAKHNIS  170 (269)
Q Consensus       128 ~-~~~~~He~~-C~~~p~~Cp~~~C~~~g-~~~~l~~Hl~~~H~~~  170 (269)
                      . ..|..|... -.-.|+.|+.  |+... ....|..|+...|..+
T Consensus        78 ~~~~l~~H~~~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~~H~~~  121 (124)
T 2dlq_A           78 RRMELRLHMVSHTGEMPYKCSS--CSQQFMQKKDLQSHMIKLHSGP  121 (124)
T ss_dssp             SHHHHHHHHHHHSSSCSEECSS--SCCEESSHHHHHHHHHHTSSCS
T ss_pred             CHHHHHHHHHHcCCCCCccCCC--ccchhCCHHHHHHHHHHHCCCC
Confidence            4 567888764 3456789984  98774 4578999999888754

>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1

Probab=85.02  E-value=2  Score=28.37  Aligned_cols=41  Identities=17%  Similarity=0.317  Sum_probs=30.0

Q ss_pred             CeeeccCCCCCCcCceeeccCCceechhchhhcCCCCCCCC
Q 038068           53 DIFDCPICFEPLTVPVFQCVNGHLACSDCCAKIKRNCPTCS   93 (269)
Q Consensus        53 ~~l~C~iC~~~l~~Pv~~c~cgH~fC~~C~~~~~~~Cp~C~   93 (269)
                      ....|..|..-+.-+-+.|.||.+||+.=...-...|+..-
T Consensus        14 ~~~rC~~C~kkvgl~~f~CrCg~~FC~~HRy~e~H~C~fDy   54 (64)
T 1wfh_A           14 RPNRCTVCRKRVGLTGFMCRCGTTFCGSHRYPEVHGCTFDF   54 (64)
T ss_dssp             SCCCCTTTCCCCCTTCEECSSSCEECTTTCSTTTTTCCCCC
T ss_pred             cCCcChhhCCccCccCEEeecCCEeccccCCcccCCCCchh
Confidence            44689999997665556899999999876554455676653

>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1

Probab=83.77  E-value=3.7  Score=27.88  Aligned_cols=42  Identities=19%  Similarity=0.324  Sum_probs=30.6

Q ss_pred             CeeeccCCCCCCcCceeeccCCceechhchhhcCCCCCCCCC
Q 038068           53 DIFDCPICFEPLTVPVFQCVNGHLACSDCCAKIKRNCPTCSS   94 (269)
Q Consensus        53 ~~l~C~iC~~~l~~Pv~~c~cgH~fC~~C~~~~~~~Cp~C~~   94 (269)
                      ....|..|..-+.-+-+.|.||.+||+.=...-...|+..-.
T Consensus        24 ~~~RC~~C~kkvgL~~f~CrCg~~FCs~HRy~e~H~C~fDyk   65 (74)
T 1wfp_A           24 TATRCLSCNKKVGVTGFKCRCGSTFCGTHRYPESHECQFDFK   65 (74)
T ss_dssp             CCCBCSSSCCBCTTTCEECTTSCEECTTTCSTTTSCCCSCTT
T ss_pred             cCccchhhcCcccccceEeccCCEeccccCCCcCCCCcCchh
Confidence            446899999876655568999999998765544556766543

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=83.73  E-value=2  Score=30.89  Aligned_cols=85  Identities=14%  Similarity=0.186  Sum_probs=55.2

Q ss_pred             CCCCCCCCCCccccchh--HHHHhhcceecccCCCCCcccccc-ccchhhhhcc----CCCeeeeCCCCCCCCcc-ChhH
Q 038068           87 RNCPTCSSPTVIVRNWA--IEKVIELVQVNCKNAEYGCQQKMS-FSKKRGHEKT----CQHSPLPCPLSDCSFLG-CSSQ  158 (269)
Q Consensus        87 ~~Cp~C~~~~~~~~~~~--l~~~i~~l~v~C~~~~~GC~~~~~-~~~~~~He~~----C~~~p~~Cp~~~C~~~g-~~~~  158 (269)
                      ..|+.|...+.......  +..-...-++.|+.    |...+. ...|..|+..    =.-.++.|+.  |+... ....
T Consensus         8 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~----C~~~f~~~~~l~~H~~~~~~~~~~~~~~C~~--C~~~f~~~~~   81 (124)
T 2dlq_A            8 VECPTCHKKFLSKYYLKVHNRKHTGEKPFECPK----CGKCYFRKENLLEHEARNCMNRSEQVFTCSV--CQETFRRRME   81 (124)
T ss_dssp             CCCTTTCCCCSSHHHHHHHHHHHSSCCSCBCTT----TCCBCSSHHHHHHHHHHCCCCSCCCCEECSS--SCCEESSHHH
T ss_pred             CCCCCCCCcCCCHHHHHHHHHhCCCCCCeECCC----CCchhcCHHHHHHHHhhhhcCCCCCCeECCC--CCCccCCHHH
Confidence            47999988765432211  22223345677874    777655 4678899763    3456789995  98774 4678


Q ss_pred             HhhhhhhhCCCCccceeec
Q 038068          159 FVRHFMAKHNISAVPFKYN  177 (269)
Q Consensus       159 l~~Hl~~~H~~~~~~~~~~  177 (269)
                      |..|+...+......+..+
T Consensus        82 l~~H~~~h~~~~~~~C~~C  100 (124)
T 2dlq_A           82 LRLHMVSHTGEMPYKCSSC  100 (124)
T ss_dssp             HHHHHHHHSSSCSEECSSS
T ss_pred             HHHHHHHcCCCCCccCCCc
Confidence            9999988776665555544

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=83.55  E-value=2.7  Score=31.60  Aligned_cols=55  Identities=25%  Similarity=0.527  Sum_probs=26.0

Q ss_pred             ceecccCCCCCcccccc-ccchhhhh-cc-CCCeeeeCCCCCCCCccC-hhHHhhhhhhhC
Q 038068          111 VQVNCKNAEYGCQQKMS-FSKKRGHE-KT-CQHSPLPCPLSDCSFLGC-SSQFVRHFMAKH  167 (269)
Q Consensus       111 l~v~C~~~~~GC~~~~~-~~~~~~He-~~-C~~~p~~Cp~~~C~~~g~-~~~l~~Hl~~~H  167 (269)
                      -++.|+..  ||...+. ...|..|. .. -.-.++.|+.++|+.... ...|..|++..|
T Consensus        96 ~~~~C~~~--~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~hh  154 (155)
T 2gli_A           96 KPYMCEHE--GCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKTVH  154 (155)
T ss_dssp             CCEECCST--TCCCEESSSSTTHHHHHHTTCSCCCEECCSTTTCCEESSHHHHHHHHHHSC
T ss_pred             CCeeCCCC--CCCCccCCHHHHHHHHHHhcCCCCCeeCCCCCCccccCCHHHHHHHHHhhc
Confidence            34555432  4555443 24555554 22 233455565445655432 345666655544

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=83.20  E-value=1.2  Score=29.45  Aligned_cols=64  Identities=16%  Similarity=0.333  Sum_probs=41.9

Q ss_pred             eecccCCCCCccccccc-cchhhhhc-cC-CCeeeeCCCCCCCCcc-ChhHHhhhhhhhCCCCccceeec
Q 038068          112 QVNCKNAEYGCQQKMSF-SKKRGHEK-TC-QHSPLPCPLSDCSFLG-CSSQFVRHFMAKHNISAVPFKYN  177 (269)
Q Consensus       112 ~v~C~~~~~GC~~~~~~-~~~~~He~-~C-~~~p~~Cp~~~C~~~g-~~~~l~~Hl~~~H~~~~~~~~~~  177 (269)
                      .+.|...  +|...+.. ..|..|++ .- .-.++.|+.++|+... ....|..|+...+......+.++
T Consensus         7 ~~~C~~~--~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   74 (79)
T 2dlk_A            7 GMPCDFP--GCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEFS   74 (79)
T ss_dssp             SEECSST--TTCCEESSHHHHHHHHHHGGGSCCCEECSCTTTCCEESSHHHHHHHHHHHHTSCCCSCCSS
T ss_pred             CccCCCC--CCcCccCCHHHHHHHHHHHhCCCCCeECCCCCCcCccCCHHHHHHHHHHhCCCCCeeCCCC
Confidence            3556543  67776654 56777765 22 3568899877798764 46789999987665555555443

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=83.04  E-value=1.7  Score=32.90  Aligned_cols=114  Identities=14%  Similarity=0.150  Sum_probs=67.4

Q ss_pred             CeeeccCCCCCCcCceeeccCCceechhchhh-------cCCCCCCCCCCCccccch--hHHHHhhcceecccCCCCCcc
Q 038068           53 DIFDCPICFEPLTVPVFQCVNGHLACSDCCAK-------IKRNCPTCSSPTVIVRNW--AIEKVIELVQVNCKNAEYGCQ  123 (269)
Q Consensus        53 ~~l~C~iC~~~l~~Pv~~c~cgH~fC~~C~~~-------~~~~Cp~C~~~~~~~~~~--~l~~~i~~l~v~C~~~~~GC~  123 (269)
                      ..+.|++|...|.....+  -.|.--..-...       ....|+.|...+......  -+..-...-.+.|+..  +|.
T Consensus        24 ~~~~C~~C~~~f~~~~~L--~~H~~~~H~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~--~C~   99 (155)
T 2rpc_A           24 LSRPKKSCDRTFSTMHEL--VTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFP--GCG   99 (155)
T ss_dssp             CSSSCCCCCCCBSSHHHH--HHHHHTTTSCCTTCSSCCCCBTTCTTSSCCCSSHHHHHHHTHHHHCCCSEECSCT--TTC
T ss_pred             cccccccCCcccCCHHHH--HHHHHhhcCCCcccCCccccccCCCCcccccCCHHHHHHHHHhcCCCCcccCCcC--CCC
Confidence            568899999988765321  112110000000       014699998876533221  1122234456788753  688


Q ss_pred             ccccc-cchhhhhccC-CCeeeeCCCCCCCCccC-hhHHhhhhhhhCCCC
Q 038068          124 QKMSF-SKKRGHEKTC-QHSPLPCPLSDCSFLGC-SSQFVRHFMAKHNIS  170 (269)
Q Consensus       124 ~~~~~-~~~~~He~~C-~~~p~~Cp~~~C~~~g~-~~~l~~Hl~~~H~~~  170 (269)
                      ..+.. ..|..|++.- .-.++.|+..+|+.... ...|..|++..+...
T Consensus       100 ~~f~~~~~L~~H~~~h~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k  149 (155)
T 2rpc_A          100 KIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSDK  149 (155)
T ss_dssp             CEESCHHHHHHHHTTTCSSCSBCCSSTTCCCCBSSHHHHHHSSTTTTSCC
T ss_pred             CccCCHHHHHHHHHhhCCCCCccCCCCCCCCccCCHHHHHHHHHHhcCCC
Confidence            77664 5778898753 34678998767987754 568999988655543

>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}

Probab=82.98  E-value=0.99  Score=37.99  Aligned_cols=44  Identities=27%  Similarity=0.486  Sum_probs=36.5

Q ss_pred             CeeeccCCCCCCcCceeecc-CCceechhchhhc-----CCCCCCCCCCCc
Q 038068           53 DIFDCPICFEPLTVPVFQCV-NGHLACSDCCAKI-----KRNCPTCSSPTV   97 (269)
Q Consensus        53 ~~l~C~iC~~~l~~Pv~~c~-cgH~fC~~C~~~~-----~~~Cp~C~~~~~   97 (269)
                      ....|.+|.+++..-+ .|+ |++.|=..|+.+|     ...||.|+.+..
T Consensus       179 ~i~~C~iC~~iv~~g~-~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~  228 (238)
T 3nw0_A          179 AVKICNICHSLLIQGQ-SCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP  228 (238)
T ss_dssp             TCCBCTTTCSBCSSCE-ECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCC
T ss_pred             CCCcCcchhhHHhCCc-ccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCC
Confidence            4678999999999776 576 9999999999987     348999988764

>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}

Probab=82.21  E-value=0.99  Score=33.57  Aligned_cols=45  Identities=24%  Similarity=0.445  Sum_probs=37.3

Q ss_pred             CeeeccCCCCCCcCceeeccCCceechhchhhc-CCCCCCCCCCCc
Q 038068           53 DIFDCPICFEPLTVPVFQCVNGHLACSDCCAKI-KRNCPTCSSPTV   97 (269)
Q Consensus        53 ~~l~C~iC~~~l~~Pv~~c~cgH~fC~~C~~~~-~~~Cp~C~~~~~   97 (269)
                      +=|.|..|..+|...-+.-.-|..+|..|..+. ...|..|..+|.
T Consensus        29 ~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~~~C~~C~~~I~   74 (126)
T 2xqn_T           29 KHFCCFDCDSILAGEIYVMVNDKPVCKPCYVKNHAVVCQGCHNAID   74 (126)
T ss_dssp             GGSBCTTTCCBCTTSEEEEETTEEEEHHHHHHHSCCBCTTTCSBCC
T ss_pred             CCCCcCCCCCCCCcCEEEeECCEEechHHhCcCcCccCcccCCcCC
Confidence            668999999999864444478999999999876 678999998876

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=82.21  E-value=0.77  Score=29.59  Aligned_cols=37  Identities=14%  Similarity=0.139  Sum_probs=29.0

Q ss_pred             ccCCCeeeeCCCCCCCCccChhHHhhhhhhhCCCCcccee
Q 038068          136 KTCQHSPLPCPLSDCSFLGCSSQFVRHFMAKHNISAVPFK  175 (269)
Q Consensus       136 ~~C~~~p~~Cp~~~C~~~g~~~~l~~Hl~~~H~~~~~~~~  175 (269)
                      +.|+.+|+.|+.  |+.......|..|... +......+.
T Consensus         4 ~~C~~~~~~C~~--C~k~f~~~~L~~H~~~-~~~~p~~C~   40 (66)
T 2eod_A            4 GSSGKRTQPCTY--CTKEFVFDTIQSHQYQ-CPRLPVACP   40 (66)
T ss_dssp             SCCCCCEEECSS--SCCEEEHHHHHHHHHH-CSSSEEECT
T ss_pred             ccCCCCCeeccc--cCCccCHHHHHHHHHH-cCCcCccCC
Confidence            579999999995  9876568899999987 665555554

>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A

Probab=82.10  E-value=1.1  Score=45.14  Aligned_cols=63  Identities=14%  Similarity=0.082  Sum_probs=52.5

Q ss_pred             CCCCeeeccCCCCCCcCceeeccCC-ceechhchhhc---CCCCCCCCCCCcc---ccchhHHHHhhccee
Q 038068           50 TDQDIFDCPICFEPLTVPVFQCVNG-HLACSDCCAKI---KRNCPTCSSPTVI---VRNWAIEKVIELVQV  113 (269)
Q Consensus        50 ~~~~~l~C~iC~~~l~~Pv~~c~cg-H~fC~~C~~~~---~~~Cp~C~~~~~~---~~~~~l~~~i~~l~v  113 (269)
                      ..|+.+.|||=.+++.+||. .+.| +++=+..|.+|   ...||.=+.++..   .+|.++...|..+..
T Consensus       887 ~iP~~F~cPIs~~lM~DPVi-lpsG~~TydR~~I~~wl~~~~tdP~Tr~~L~~~~liPN~~Lk~~I~~w~~  956 (968)
T 3m62_A          887 DVPDEFLDPLMYTIMKDPVI-LPASKMNIDRSTIKAHLLSDSTDPFNRMPLKLEDVTPNEELRQKILCFKK  956 (968)
T ss_dssp             CSCGGGBCTTTCSBCSSEEE-CTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGGCEECHHHHHHHHHHHH
T ss_pred             CCcHHhCCcchhhHHhCCeE-cCCCCEEECHHHHHHHHhcCCCCCCCCCCCCcccccccHHHHHHHHHHHH
Confidence            34699999999999999996 5777 68999999999   5679999998863   588888888887643

>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1

Probab=81.47  E-value=2.8  Score=27.70  Aligned_cols=42  Identities=21%  Similarity=0.300  Sum_probs=30.6

Q ss_pred             CeeeccCCCCCCcCceeeccCCceechhchhhcCCCCCCCCC
Q 038068           53 DIFDCPICFEPLTVPVFQCVNGHLACSDCCAKIKRNCPTCSS   94 (269)
Q Consensus        53 ~~l~C~iC~~~l~~Pv~~c~cgH~fC~~C~~~~~~~Cp~C~~   94 (269)
                      ....|..|..-+.-+.+.|.||.+||..=...-...|+..-.
T Consensus        14 ~~~rC~~C~kkvgl~~f~CrCg~~FC~~HR~~e~H~C~fDyk   55 (64)
T 1wg2_A           14 PNNRCFSCNKKVGVMGFKCKCGSTFCGSHRYPEKHECSFDFK   55 (64)
T ss_dssp             CSCSCTTTCCCCTTSCEECTTSCEECSSSCSSTTTTCCCCCS
T ss_pred             cCCcChhhCCcccccCeEeecCCEecccCCCccccCCCcchh
Confidence            345899999976655568999999998766544556776544

>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1

Probab=81.43  E-value=2.9  Score=28.38  Aligned_cols=40  Identities=28%  Similarity=0.489  Sum_probs=28.2

Q ss_pred             CeeeccCCCCCCcCceeeccCCceechhchhhcCCCCCCC
Q 038068           53 DIFDCPICFEPLTVPVFQCVNGHLACSDCCAKIKRNCPTC   92 (269)
Q Consensus        53 ~~l~C~iC~~~l~~Pv~~c~cgH~fC~~C~~~~~~~Cp~C   92 (269)
                      ....|..|..-+....+.|.||..||+.=...-...|+..
T Consensus        24 ~~nRC~~CrKkvgL~gf~CrCg~~FCs~HRy~e~H~C~fD   63 (74)
T 1wfl_A           24 KKNRCFMCRKKVGLTGFDCRCGNLFCGLHRYSDKHNCPYD   63 (74)
T ss_dssp             CTTBCSSSCCBCGGGCEECTTSCEECSSSCSTTTTTCCCC
T ss_pred             cCCcChhhCCcccccCeecCCCCEechhcCCCccCCCcch
Confidence            3458999998654434689999999986655444567654

>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}

Probab=81.03  E-value=0.49  Score=36.43  Aligned_cols=26  Identities=23%  Similarity=0.529  Sum_probs=22.5

Q ss_pred             CeeeeCCCCCCCCccChhHHhh-hhhh
Q 038068          140 HSPLPCPLSDCSFLGCSSQFVR-HFMA  165 (269)
Q Consensus       140 ~~p~~Cp~~~C~~~g~~~~l~~-Hl~~  165 (269)
                      -.++.||+.||+|.+...++.. |+..
T Consensus       102 ~L~v~Cpn~GC~~~~~l~~l~~~H~~~  128 (141)
T 3knv_A          102 SLPAVCPSDGCTWKGTLKEYESCHEGR  128 (141)
T ss_dssp             TSEEECCSTTCCCEEEHHHHHHHTTTC
T ss_pred             ccccccCCCCCCCEeEHHHHHHHHHHH
Confidence            4578999999999999999998 8754

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=80.90  E-value=1.4  Score=29.30  Aligned_cols=74  Identities=24%  Similarity=0.520  Sum_probs=43.0

Q ss_pred             CCCCCCCccccch--hHHHHhhcceecccCCCCCccccccc-cchhhhhccCCCeeeeCCCCC-CCCccC-hhHHhhhhh
Q 038068           90 PTCSSPTVIVRNW--AIEKVIELVQVNCKNAEYGCQQKMSF-SKKRGHEKTCQHSPLPCPLSD-CSFLGC-SSQFVRHFM  164 (269)
Q Consensus        90 p~C~~~~~~~~~~--~l~~~i~~l~v~C~~~~~GC~~~~~~-~~~~~He~~C~~~p~~Cp~~~-C~~~g~-~~~l~~Hl~  164 (269)
                      +.|...+......  -+..-....++.|+..  ||...+.. ..|..|++.-.-  +.|+.++ |+.... ...|..|++
T Consensus         7 ~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~--~C~~~f~~~~~l~~H~~~h~~--~~C~~~~~C~~~f~~~~~l~~H~~   82 (85)
T 2j7j_A            7 ENCGKAFKKHNQLKVHQFSHTQQLPYECPHE--GCDKRFSLPSRLKRHEKVHAG--YPCKKDDSCSFVGKTWTLYLKHVA   82 (85)
T ss_dssp             TTCCCEESSHHHHHHHHHHHHTTCCEECCST--TCCCEESSHHHHHHHHHHHHS--EECCSCSSCCCEESSHHHHHHHHH
T ss_pred             CCCCcccCCHHHHHHHHHHhCCCCCeeCCCC--CCcCccCCHHHHHHHHHHhCC--CCCCCCCCCCCccCCHHHHHHHHH
Confidence            6676655432111  1222234556788653  78776654 566777654222  7787654 887654 568888887


Q ss_pred             hhC
Q 038068          165 AKH  167 (269)
Q Consensus       165 ~~H  167 (269)
                      ..|
T Consensus        83 ~hh   85 (85)
T 2j7j_A           83 ECH   85 (85)
T ss_dssp             HCC
T ss_pred             hcC
Confidence            655

>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2

Probab=80.39  E-value=1.1  Score=29.16  Aligned_cols=38  Identities=29%  Similarity=0.646  Sum_probs=29.0

Q ss_pred             eeccCCCCCCcCc-eeecc-CCceechhchhhc---CCCCCCC
Q 038068           55 FDCPICFEPLTVP-VFQCV-NGHLACSDCCAKI---KRNCPTC   92 (269)
Q Consensus        55 l~C~iC~~~l~~P-v~~c~-cgH~fC~~C~~~~---~~~Cp~C   92 (269)
                      ..|-.|...+.+. +++|+ |++.||.+|=.-+   -..||.|
T Consensus        16 ~~C~~C~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPgC   58 (59)
T 1z60_A           16 RFCYGCQGELKDQHVYVCAVCQNVFCVDCDVFVHDSLHSCPGC   58 (59)
T ss_dssp             CEETTTTEECTTSEEECCTTTTCCBCHHHHHTTTTTSCSSSTT
T ss_pred             CcccccCcccCCCccEECCccCcCcccchhHHHHhhccCCcCC
Confidence            3599999998654 47886 9999999995433   3579887

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=80.34  E-value=1.2  Score=31.61  Aligned_cols=38  Identities=32%  Similarity=0.413  Sum_probs=24.8

Q ss_pred             chhhhhccCCCeeeeCCCCCCCCcc-ChhHHhhhhhhhCCC
Q 038068          130 KKRGHEKTCQHSPLPCPLSDCSFLG-CSSQFVRHFMAKHNI  169 (269)
Q Consensus       130 ~~~~He~~C~~~p~~Cp~~~C~~~g-~~~~l~~Hl~~~H~~  169 (269)
                      .|..|+.--.-.|+.|+.  |+... ....|..|++..|..
T Consensus        57 ~l~~H~~H~~~~~~~C~~--C~~~f~~~~~L~~H~~~~H~~   95 (107)
T 1wjp_A           57 LKQEHESKCEYKKLTCLE--CMRTFKSSFSIWRHQVEVHNQ   95 (107)
T ss_dssp             HHHHHHHHCSTGGGEEGG--GTEECSSHHHHHHHHHHTSCC
T ss_pred             HHHHHHHcCCCCCccCcc--ccchhCCHHHHHHHHHHHcCC
Confidence            444554333345678884  88664 456899999877764

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=80.01  E-value=2.8  Score=28.64  Aligned_cols=52  Identities=23%  Similarity=0.477  Sum_probs=34.1

Q ss_pred             eecccCCCCCccccccc-cchhhhhccC-CCeeeeCCCCCCCCcc-ChhHHhhhhhhhCCC
Q 038068          112 QVNCKNAEYGCQQKMSF-SKKRGHEKTC-QHSPLPCPLSDCSFLG-CSSQFVRHFMAKHNI  169 (269)
Q Consensus       112 ~v~C~~~~~GC~~~~~~-~~~~~He~~C-~~~p~~Cp~~~C~~~g-~~~~l~~Hl~~~H~~  169 (269)
                      .+.|+.    |...+.. ..|..|+..- .-.++.|+.  |+... ....|..|++..|..
T Consensus        36 ~~~C~~----C~~~f~~~~~l~~H~~~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~h~~~   90 (96)
T 2dmd_A           36 PYKCKT----CDYAAADSSSLNKHLRIHSDERPFKCQI--CPYASRNSSQLTVHLRSHTGD   90 (96)
T ss_dssp             SEECSS----SCCEESSHHHHHHHHHHSCCCCCEECSS--SSCEESSHHHHHHHHTTCCSC
T ss_pred             CEeCCC----CCCccCCHHHHHHHHHHhCCCCCccCCC--CCCccCCHHHHHHHHHHhcCC
Confidence            456653    6655543 4667776542 345789985  98764 467899998876654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	269
d1k2fa_	190	b.8.1.2 (A:) SIAH, seven in absentia homolog {Mous	2e-17
d1bora_	56	g.44.1.1 (A:) Acute promyelocytic leukaemia proto-	9e-06
d1jm7b_	97	g.44.1.1 (B:) bard1 RING domain {Human (Homo sapie	3e-05
d1jm7a_	103	g.44.1.1 (A:) brca1 RING domain {Human (Homo sapie	2e-04
d1chca_	68	g.44.1.1 (A:) Immediate early protein, IEEHV {Equi	2e-04
d1fbva4	79	g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [Ta	0.002
d1rmda2	86	g.44.1.1 (A:1-86) V(D)J recombination activating p	0.003

>d1k2fa_ b.8.1.2 (A:) SIAH, seven in absentia homolog {Mouse (Mus musculus) [TaxId: 10090]} Length = 190

class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: SIAH, seven in absentia homolog
domain: SIAH, seven in absentia homolog
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 76.2 bits (187), Expect = 2e-17
 Identities = 30/165 (18%), Positives = 57/165 (34%), Gaps = 16/165 (9%)

Query: 111 VQVNCKNAEYGCQQKMSFSKKRGHEKTCQHSPLPC--PLSDCSFLGCSSQFVRHFMAKHN 168
           V   CK A  GC+  +  ++K  HE+ C+  P  C  P + C + G     + H M +H 
Sbjct: 2   VLFPCKYASSGCEITLPHTEKAEHEELCEFRPYSCPCPGASCKWQGSLDAVMPHLMHQHK 61

Query: 169 ISAVPFKYNSLLNVNLNVNDINIDGKFSVLQEEKNDDVLFILNNNTGSLGN----LVSVC 224
                       ++     DIN+ G    +  +      F+L        +      ++ 
Sbjct: 62  SITTLQGE----DIVFLATDINLPGAVDWVMMQSCFGFHFMLVLEKQEKYDGHQQFFAIV 117

Query: 225 CIASVRKD---LYYDIVARCVTGTTLKIQSSTWS--SKVRSDIPS 264
            +   RK      Y +         L  +++  S    + + I +
Sbjct: 118 QLIGTRKQAENFAYRLELN-GHRRRLTWEATPRSIHEGIATAIMN 161

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]} Length = 56

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.2 bits (94), Expect = 9e-06
 Identities = 11/39 (28%), Positives = 12/39 (30%), Gaps = 1/39 (2%)

Query: 57 CPICFEPLTVPVFQCVNGHLACSDCCAKIKRNCPTCSSP 95
          C  C      P       H  CS C       CP C +P
Sbjct: 9  CQQCQAEAKCPKL-LPCLHTLCSGCLEASGMQCPICQAP 46

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 97

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: bard1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.8 bits (92), Expect = 3e-05
 Identities = 17/84 (20%), Positives = 32/84 (38%), Gaps = 5/84 (5%)

Query: 33  DEEEDGSCKNGSEALTITDQDIFDCPICFEPLTVPVFQCVNGHLACSDCCAKI----KRN 88
           + +  G+  +   AL   ++    C  C   L  PV      H+ CS+C +         
Sbjct: 2   EPDGRGAWAHSRAALDRLEKL-LRCSRCTNILREPVCLGGCEHIFCSNCVSDCIGTGCPV 60

Query: 89  CPTCSSPTVIVRNWAIEKVIELVQ 112
           C T +    +  N  ++ +I+L  
Sbjct: 61  CYTPAWIQDLKINRQLDSMIQLCS 84

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.7 bits (87), Expect = 2e-04
 Identities = 19/74 (25%), Positives = 31/74 (41%), Gaps = 11/74 (14%)

Query: 52  QDIFDCPICFEPLTVPVFQCVNGHLACSDCC------AKIKRNCPTCS---SPTVIVRNW 102
           Q I +CPIC E +  PV      H+ C  C        K    CP C    +   +  + 
Sbjct: 19  QKILECPICLELIKEPV-STKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQEST 77

Query: 103 AIEKVIE-LVQVNC 115
              +++E L+++ C
Sbjct: 78  RFSQLVEELLKIIC 91

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]} Length = 68

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

 Score = 36.8 bits (85), Expect = 2e-04
 Identities = 12/42 (28%), Positives = 14/42 (33%), Gaps = 3/42 (7%)

Query: 57 CPICFEPLTVPVFQCVNGHLACSDC---CAKIKRNCPTCSSP 95
          CPIC E  +         H  C  C     +    CP C  P
Sbjct: 8  CPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVP 49

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]} Length = 79

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.2 bits (78), Expect = 0.002
 Identities = 12/49 (24%), Positives = 14/49 (28%), Gaps = 5/49 (10%)

Query: 51 DQDIFDCPICFEPLTVPVFQCVNGHLACSDCCAKI----KRNCPTCSSP 95
                C IC E           GHL C+ C         + CP C   
Sbjct: 20 GSTFQLCKICAENDKDVKI-EPCGHLMCTSCLTSWQESEGQGCPFCRCE 67

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 86

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 33.7 bits (77), Expect = 0.003
 Identities = 16/61 (26%), Positives = 20/61 (32%), Gaps = 5/61 (8%)

Query: 39 SCKNGSEALTITDQDIFDCPICFEPLTVPVFQCVNGHLACSDCCAKI----KRNCPTCSS 94
          S K  +            C IC   L  PV +    HL C  C  +        CP+C  
Sbjct: 8  STKLLAVDFPAHFVKSISCQICEHILADPV-ETSCKHLFCRICILRCLKVMGSYCPSCRY 66

Query: 95 P 95
          P
Sbjct: 67 P 67

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	269
d1k2fa_	190	SIAH, seven in absentia homolog {Mouse (Mus muscul	99.94
d2c2la2	80	STIP1 homology and U box-containing protein 1, STU	99.19
d1jm7b_	97	bard1 RING domain {Human (Homo sapiens) [TaxId: 96	99.19
d1t1ha_	78	E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsi	99.16
d1bora_	56	Acute promyelocytic leukaemia proto-oncoprotein PM	99.1
d1rmda2	86	V(D)J recombination activating protein 1 (RAG1), d	99.09
d1jm7a_	103	brca1 RING domain {Human (Homo sapiens) [TaxId: 96	99.03
d1wgma_	98	Ubiquitin conjugation factor E4A {Human (Homo sapi	98.99
d2baya1	56	Pre-mRNA splicing factor Prp19 {Baker's yeast (Sac	98.94
d1chca_	68	Immediate early protein, IEEHV {Equine herpesvirus	98.9
d1fbva4	79	CBL {Human (Homo sapiens) [TaxId: 9606]}	98.81
d1ur6b_	52	Not-4 N-terminal RING finger domain {Human (Homo s	98.75
d1g25a_	65	TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9	98.69
d1iyma_	55	EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45	98.64
d1v87a_	114	Deltex protein 2 RING-H2 domain {Mouse (Mus muscul	98.22
d3dplr1	88	RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase	98.1
d1vyxa_	60	IE1B protein (ORF K3), N-terminal domain {Kaposi's	97.87
d1wima_	94	UbcM4-interacting protein 4 (KIAA0161) {Human (Hom	97.11
d1wfpa_	74	Zinc finger A20 and AN1 domains containing protein	93.92
d1ubdc4	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	92.26
d1zfda_	32	SWI5 zinc-finger domains {Baker's yeast (Saccharom	92.12
d1a1ia1	29	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	91.65
d1sp2a_	31	Transcription factor sp1 {Human (Homo sapiens) [Ta	91.16
d1ubdc3	30	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	90.97
d2glia3	30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	90.62
d1wfla_	74	Zinc finger A20 domain containing protein 2 {Mouse	89.71
d1wffa_	85	ANUBL1 (AN1, ubiquitin-like, homolog) {Mouse (Mus	88.15
d1z60a1	59	TFIIH p44 subunit cysteine-rich domain {Human (Hom	87.45
d1wfha_	64	Zinc finger A20 and AN1 domains containing protein	84.73
d2cs3a1	80	Protein c14orf4 (KIAA1865) {Human (Homo sapiens) [	84.24
d2glia5	29	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	82.91
d1ncsa_	47	SWI5 zinc-finger domains {Baker's yeast (Saccharom	82.71
d2jnea1	71	Hypothetical protein YfgJ {Escherichia coli [TaxId	81.65
d2ct7a1	73	Ring finger protein 31 {Human (Homo sapiens) [TaxI	81.05

>d1k2fa_ b.8.1.2 (A:) SIAH, seven in absentia homolog {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: SIAH, seven in absentia homolog
domain: SIAH, seven in absentia homolog
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.94  E-value=9e-28  Score=198.33  Aligned_cols=154  Identities=18%  Similarity=0.256  Sum_probs=122.1

Q ss_pred             cceecccCCCCCccccccccchhhhhccCCCeeeeCCCC--CCCCccChhHHhhhhhhhCCCCccceeecceEEEEeecc
Q 038068          110 LVQVNCKNAEYGCQQKMSFSKKRGHEKTCQHSPLPCPLS--DCSFLGCSSQFVRHFMAKHNISAVPFKYNSLLNVNLNVN  187 (269)
Q Consensus       110 ~l~v~C~~~~~GC~~~~~~~~~~~He~~C~~~p~~Cp~~--~C~~~g~~~~l~~Hl~~~H~~~~~~~~~~~~~~~~l~~~  187 (269)
                      ++.+||+|+.+||.++++|.++..||++|+|+|+.||.+  +|+|+|...+|..|++..|++..+.+.++..+.....  
T Consensus         1 Sv~~pC~~~~~GC~~~~~~~~~~~HE~~C~~~p~~C~~~~~~C~~~G~~~~l~~Hl~~~H~~~~~~~~~~~~~~~~~~--   78 (190)
T d1k2fa_           1 SVLFPCKYASSGCEITLPHTEKAEHEELCEFRPYSCPCPGASCKWQGSLDAVMPHLMHQHKSITTLQGEDIVFLATDI--   78 (190)
T ss_dssp             CCCCCCTTGGGTCCCCCCGGGHHHHHHTCTTSCEECCSSSTTCCCEECHHHHHHHHHHSSCCCEEEESSEEEEEECCT--
T ss_pred             CeeEecCCCCCCCCEeccccchhhHHhcCCCcccCCCCCCCCCccCCCHhHHHHHHHhcCCcccccCccceEEeeecc--
Confidence            468999999999999999999999999999999888775  6999999999999999999977666555544333221  


Q ss_pred             CCCCCCceEEEEeeeCCCeEEEEEcCccCcc-----ceEEEEEeecCC--CCCeEEEEEEecCCeEEEEeeeeeeecc-c
Q 038068          188 DINIDGKFSVLQEEKNDDVLFILNNNTGSLG-----NLVSVCCIASVR--KDLYYDIVARCVTGTTLKIQSSTWSSKV-R  259 (269)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~lF~l~~~~~~~g-----~~v~v~ci~~~~--~~f~Y~l~~~~~~~~~l~~~s~~~~~~~-~  259 (269)
                        +..+...|++...+++.+|+|+..+...+     ..+.|++||+++  .+|.|+|++. +++|+|+|++.+++|++ +
T Consensus        79 --~~~~~~~~v~~~~~~g~~F~l~~~~~~~~~~~~~~~~~v~~~G~~~~a~~f~Yel~l~-~~~r~l~~~~~~~si~e~~  155 (190)
T d1k2fa_          79 --NLPGAVDWVMMQSCFGFHFMLVLEKQEKYDGHQQFFAIVQLIGTRKQAENFAYRLELN-GHRRRLTWEATPRSIHEGI  155 (190)
T ss_dssp             --TCTTCCEEEEEEEETTEEEEEEEEEEEETTTEEEEEEEEEESSCHHHHTTEEEEEEEE-ETTEEEEEEECCEETTTCS
T ss_pred             --ccccceeEEEEEecCCCEEEEEEEEEeccCCCCeEEEEEEEECCHHHhhCccEEEEec-CCCceEEEecccccccccc
Confidence              12223345666678999999998764433     247788999876  9999999999 99999999999999986 4


Q ss_pred             cCCCCCCCC
Q 038068          260 SDIPSPFGF  268 (269)
Q Consensus       260 ~~~~~~~~~  268 (269)
                      .+..++..|
T Consensus       156 ~~~~~~~d~  164 (190)
T d1k2fa_         156 ATAIMNSDC  164 (190)
T ss_dssp             HHHHHTTCS
T ss_pred             ccccCCCCE
Confidence            444444444

>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.19  E-value=5.9e-12  Score=88.20  Aligned_cols=62  Identities=21%  Similarity=0.195  Sum_probs=53.2

Q ss_pred             CCCeeeccCCCCCCcCceeeccCCceechhchhhc----CCCCCCCCCCCcc---ccchhHHHHhhccee
Q 038068           51 DQDIFDCPICFEPLTVPVFQCVNGHLACSDCCAKI----KRNCPTCSSPTVI---VRNWAIEKVIELVQV  113 (269)
Q Consensus        51 ~~~~l~C~iC~~~l~~Pv~~c~cgH~fC~~C~~~~----~~~Cp~C~~~~~~---~~~~~l~~~i~~l~v  113 (269)
                      .++.|.||||++++.+||. .+|||+||..|+.++    ...||.|+.++..   ..|.+|.++|+++.-
T Consensus         4 iP~~l~CpIc~~l~~dPv~-~~cGhtfc~~ci~~~l~~~~~~cP~c~~~l~~~~l~pN~~L~~~I~~~l~   72 (80)
T d2c2la2           4 IPDYLCGKISFELMREPCI-TPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAMKEVIDAFIS   72 (80)
T ss_dssp             CCSTTBCTTTCSBCSSEEE-CSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCEECHHHHHHHHHHHT
T ss_pred             CCccccCcCcCchhhhhcc-cCCcCeecHHHHHHHHhcCCccCCCccccccccccccHHHHHHHHHHHHH
Confidence            3588999999999999995 699999999999988    4579999998863   578999999988653

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: bard1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=3.2e-12  Score=92.92  Aligned_cols=59  Identities=29%  Similarity=0.638  Sum_probs=50.0

Q ss_pred             CeeeccCCCCCCcCceeeccCCceechhchhhc-CCCCCCCCCCCcc---ccchhHHHHhhcc
Q 038068           53 DIFDCPICFEPLTVPVFQCVNGHLACSDCCAKI-KRNCPTCSSPTVI---VRNWAIEKVIELV  111 (269)
Q Consensus        53 ~~l~C~iC~~~l~~Pv~~c~cgH~fC~~C~~~~-~~~Cp~C~~~~~~---~~~~~l~~~i~~l  111 (269)
                      +.|.|+||.+++.+|++..+|||+||..|+.+| ...||.|+.++..   ..|..++++++.+
T Consensus        21 ~~l~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~~~CP~Cr~~~~~~~l~~n~~l~~lv~~~   83 (97)
T d1jm7b_          21 KLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIGTGCPVCYTPAWIQDLKINRQLDSMIQLC   83 (97)
T ss_dssp             HTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTTTBCSSSCCBCSCSSCCCCHHHHHHHHHH
T ss_pred             hcCCCccCCchhhcCceeCCCCCchhHHHHHHHHhccccccCCcCchhhCcccHHHHHHHHHH
Confidence            668999999999999966689999999999998 5679999987752   4678888887654

>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: E3 ubiquitin ligase PUB14
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.16  E-value=7.6e-12  Score=87.20  Aligned_cols=61  Identities=23%  Similarity=0.447  Sum_probs=51.6

Q ss_pred             CCCeeeccCCCCCCcCceeeccCCceechhchhhc----CCCCCCCCCCCcc---ccchhHHHHhhcce
Q 038068           51 DQDIFDCPICFEPLTVPVFQCVNGHLACSDCCAKI----KRNCPTCSSPTVI---VRNWAIEKVIELVQ  112 (269)
Q Consensus        51 ~~~~l~C~iC~~~l~~Pv~~c~cgH~fC~~C~~~~----~~~Cp~C~~~~~~---~~~~~l~~~i~~l~  112 (269)
                      .+++|.||||++++.+||. ++|||+||..|+.+|    ...||.|+.++..   ..|.++.++|+++.
T Consensus         5 iP~~l~CpIc~~~m~dPV~-~~cgh~fc~~ci~~~~~~~~~~cP~~~~~l~~~~l~pN~~L~~~I~~~~   72 (78)
T d1t1ha_           5 FPEYFRCPISLELMKDPVI-VSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVLKSLIALWC   72 (78)
T ss_dssp             CSSSSSCTTTSCCCSSEEE-ETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCEECTTTHHHHHHHH
T ss_pred             CCccCCCcCcCchhhCceE-ccCCCcchHHHHHHHHHHCCCCCCcccccCCcccccchHHHHHHHHHHH
Confidence            3588999999999999995 699999999999988    3469999998863   46888888887653

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=1.6e-11  Score=79.81  Aligned_cols=46  Identities=24%  Similarity=0.543  Sum_probs=41.4

Q ss_pred             CeeeccCCCCCCcCceeeccCCceechhchhhcCCCCCCCCCCCccc
Q 038068           53 DIFDCPICFEPLTVPVFQCVNGHLACSDCCAKIKRNCPTCSSPTVIV   99 (269)
Q Consensus        53 ~~l~C~iC~~~l~~Pv~~c~cgH~fC~~C~~~~~~~Cp~C~~~~~~~   99 (269)
                      +.|.|+||++.+.+|+. .+|||+||..|+.++...||.||.++...
T Consensus         5 ~~l~C~IC~~~~~~p~~-lpCgH~fC~~Ci~~~~~~CP~Cr~~~~~~   50 (56)
T d1bora_           5 QFLRCQQCQAEAKCPKL-LPCLHTLCSGCLEASGMQCPICQAPWPLG   50 (56)
T ss_dssp             CCSSCSSSCSSCBCCSC-STTSCCSBTTTCSSSSSSCSSCCSSSSCC
T ss_pred             CCCCCcccCcccCCCEE-ecCCCHHhHHHHHcCCCcCcCCCCcccCC
Confidence            56899999999999985 69999999999999988999999988643

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.09  E-value=1.9e-11  Score=86.50  Aligned_cols=45  Identities=31%  Similarity=0.617  Sum_probs=39.7

Q ss_pred             CeeeccCCCCCCcCceeeccCCceechhchhhc----CCCCCCCCCCCcc
Q 038068           53 DIFDCPICFEPLTVPVFQCVNGHLACSDCCAKI----KRNCPTCSSPTVI   98 (269)
Q Consensus        53 ~~l~C~iC~~~l~~Pv~~c~cgH~fC~~C~~~~----~~~Cp~C~~~~~~   98 (269)
                      +.+.|+||.+++.+|+. ++|||+||..|+.+|    ...||.||.++..
T Consensus        22 ~~l~C~IC~~~~~~pv~-~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~p~~~   70 (86)
T d1rmda2          22 KSISCQICEHILADPVE-TSCKHLFCRICILRCLKVMGSYCPSCRYPCFP   70 (86)
T ss_dssp             HHTBCTTTCSBCSSEEE-CTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred             cCcCCccCCcchhccee-cCCCChhhHHHHHHHHhhCCCcCcccCCCCCh
Confidence            55799999999999995 699999999999988    3579999998763

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.03  E-value=1.8e-11  Score=89.85  Aligned_cols=64  Identities=27%  Similarity=0.646  Sum_probs=50.4

Q ss_pred             CeeeccCCCCCCcCceeeccCCceechhchhhc------CCCCCCCCCCCcc---ccchhHHHHhhcc-eecccC
Q 038068           53 DIFDCPICFEPLTVPVFQCVNGHLACSDCCAKI------KRNCPTCSSPTVI---VRNWAIEKVIELV-QVNCKN  117 (269)
Q Consensus        53 ~~l~C~iC~~~l~~Pv~~c~cgH~fC~~C~~~~------~~~Cp~C~~~~~~---~~~~~l~~~i~~l-~v~C~~  117 (269)
                      +.|.||||++++.+|+. .+|||+||..|+..|      ...||.||.++..   ..|..+.++++++ ++.|++
T Consensus        20 ~~l~CpIC~~~~~~pv~-~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~~ve~l~~~~~~~   93 (103)
T d1jm7a_          20 KILECPICLELIKEPVS-TKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQESTRFSQLVEELLKIICAF   93 (103)
T ss_dssp             HHTSCSSSCCCCSSCCB-CTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCBCCCSSSHHHHHHHHHHHHH
T ss_pred             cCcCCCccCchhCCeEE-cCCCCchhhHHHHHHHHHCCCCCcCcCCCCcCChhhCCcCHHHHHHHHHHHHHHccc
Confidence            56899999999999995 699999999999987      2479999998752   3566666666665 355553

>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Ubiquitin conjugation factor E4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.99  E-value=2.2e-10  Score=83.04  Aligned_cols=62  Identities=19%  Similarity=0.121  Sum_probs=51.5

Q ss_pred             CCCCeeeccCCCCCCcCceeeccCC-ceechhchhhc---CCCCCCCCCCCcc---ccchhHHHHhhcce
Q 038068           50 TDQDIFDCPICFEPLTVPVFQCVNG-HLACSDCCAKI---KRNCPTCSSPTVI---VRNWAIEKVIELVQ  112 (269)
Q Consensus        50 ~~~~~l~C~iC~~~l~~Pv~~c~cg-H~fC~~C~~~~---~~~Cp~C~~~~~~---~~~~~l~~~i~~l~  112 (269)
                      ..|+.|.||||.+++.+||. .+|| |.||..||.+|   ...||.|+.++..   ..|.+|.+.|+.+.
T Consensus        18 ~~P~~f~CPI~~~lm~dPV~-~~~~~~ty~r~~I~~~l~~~~~~P~~~~~l~~~~L~pN~~Lr~~I~~~~   86 (98)
T d1wgma_          18 DACDEFLDPIMSTLMCDPVV-LPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQIRPNTELKEKIQRWL   86 (98)
T ss_dssp             SCCTTTBCTTTCSBCSSEEE-CTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCTTTSEECHHHHHHHHHHH
T ss_pred             CCcHHhCCcCchhHHHHHHh-cccccchhhHHHHHHHHHhcCCcccccccccchhhcchHHHHHHHHHHH
Confidence            34588999999999999995 4654 69999999998   5789999999873   47888888887654

>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Pre-mRNA splicing factor Prp19
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.94  E-value=1.7e-10  Score=74.98  Aligned_cols=44  Identities=18%  Similarity=0.181  Sum_probs=38.8

Q ss_pred             eeccCCCCCCcCceeeccCCceechhchhhc---CCCCCCCCCCCcc
Q 038068           55 FDCPICFEPLTVPVFQCVNGHLACSDCCAKI---KRNCPTCSSPTVI   98 (269)
Q Consensus        55 l~C~iC~~~l~~Pv~~c~cgH~fC~~C~~~~---~~~Cp~C~~~~~~   98 (269)
                      |.|+||++++.+||....|||+||..|+.+|   ...||.||.++..
T Consensus         1 l~C~Ic~~~~~~Pv~~~~cGh~fc~~cI~~~l~~~~~CP~c~~~l~~   47 (56)
T d2baya1           1 MLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSI   47 (56)
T ss_dssp             CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCG
T ss_pred             CCCccCCchHHhcCccCCCCCcccHHHHHHHHhhccCCCccCCcCCH
Confidence            5799999999999965469999999999999   5689999998763

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

Probab=98.90  E-value=4.7e-10  Score=75.76  Aligned_cols=42  Identities=29%  Similarity=0.632  Sum_probs=38.2

Q ss_pred             eccCCCCCCcCceeeccCCceechhchhhc---CCCCCCCCCCCc
Q 038068           56 DCPICFEPLTVPVFQCVNGHLACSDCCAKI---KRNCPTCSSPTV   97 (269)
Q Consensus        56 ~C~iC~~~l~~Pv~~c~cgH~fC~~C~~~~---~~~Cp~C~~~~~   97 (269)
                      .|+||++.+..|++..+|||.||..|+.+|   +..||.||.++.
T Consensus         7 ~C~IC~~~~~~~~~~~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~i~   51 (68)
T d1chca_           7 RCPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVE   51 (68)
T ss_dssp             CCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCC
T ss_pred             CCccCCcCccCCcEEeCCCCcCcHHHHHHHHHhCCcCCCCCcchH
Confidence            699999999888777799999999999999   678999999875

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.81  E-value=1.2e-09  Score=75.98  Aligned_cols=45  Identities=27%  Similarity=0.485  Sum_probs=38.8

Q ss_pred             CeeeccCCCCCCcCceeeccCCceechhchhhc----CCCCCCCCCCCcc
Q 038068           53 DIFDCPICFEPLTVPVFQCVNGHLACSDCCAKI----KRNCPTCSSPTVI   98 (269)
Q Consensus        53 ~~l~C~iC~~~l~~Pv~~c~cgH~fC~~C~~~~----~~~Cp~C~~~~~~   98 (269)
                      +...|+||++.+.+|+. .+|||.||..|+..|    ...||+||..+..
T Consensus        22 ~~~~C~IC~~~~~~~~~-~~CgH~fC~~Ci~~wl~~~~~~CP~Cr~~i~~   70 (79)
T d1fbva4          22 TFQLCKICAENDKDVKI-EPCGHLMCTSCLTSWQESEGQGCPFCRCEIKG   70 (79)
T ss_dssp             CTTBCTTTSSSBCCEEC-SSSCCEECHHHHHHHHHTTCCSCTTTCCCCCC
T ss_pred             CCCCCccCCCcCCCeEE-eCCCCeeeHHHHHHHHHHCcCcCCCCCcCccC
Confidence            33579999999999985 699999999999998    3579999998864

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Not-4 N-terminal RING finger domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.75  E-value=1.1e-09  Score=69.86  Aligned_cols=43  Identities=37%  Similarity=0.998  Sum_probs=35.0

Q ss_pred             eeccCCCCCCcCc---eeeccCCceechhchhhc----CCCCCCCCCCCc
Q 038068           55 FDCPICFEPLTVP---VFQCVNGHLACSDCCAKI----KRNCPTCSSPTV   97 (269)
Q Consensus        55 l~C~iC~~~l~~P---v~~c~cgH~fC~~C~~~~----~~~Cp~C~~~~~   97 (269)
                      ++||||++.+...   +..++|||.||..|+.+|    +..||+||.++.
T Consensus         1 leCpICl~~~~~~~~~~~~~~CgH~~c~~C~~~w~~~~~~~CP~CR~~~~   50 (52)
T d1ur6b_           1 VECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYP   50 (52)
T ss_dssp             CEETTTTEECCGGGTTCCSSSSSCCCCHHHHHHHTTTSCCBCTTTCCBCS
T ss_pred             CCCcCCChhhhCCCceEEecCCCCccchHHHHHHHhhcCCCCCccCCcCC
Confidence            5899999988543   335689999999999998    346999999874

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: TFIIH Mat1 subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.69  E-value=1.8e-09  Score=72.16  Aligned_cols=45  Identities=31%  Similarity=0.678  Sum_probs=35.7

Q ss_pred             CeeeccCCCCCCc-C---ceeeccCCceechhchhhc----CCCCCCCCCCCc
Q 038068           53 DIFDCPICFEPLT-V---PVFQCVNGHLACSDCCAKI----KRNCPTCSSPTV   97 (269)
Q Consensus        53 ~~l~C~iC~~~l~-~---Pv~~c~cgH~fC~~C~~~~----~~~Cp~C~~~~~   97 (269)
                      ++..||||++.+. +   .+...+|||.||..|+.+|    +..||.||.++.
T Consensus         2 dd~~CpIC~~~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~~CP~CR~~i~   54 (65)
T d1g25a_           2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLR   54 (65)
T ss_dssp             CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCS
T ss_pred             CCCCCCcCCceeecCCceEEEeCccChHhhHHHHHHHhCcCcCCCCCCCcCcc
Confidence            5679999998642 2   2345689999999999998    357999999875

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: EL5 RING-H2 domain
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=98.64  E-value=1.2e-08  Score=65.57  Aligned_cols=44  Identities=23%  Similarity=0.483  Sum_probs=36.0

Q ss_pred             CeeeccCCCCCCcCc--eeec-cCCceechhchhhc---CCCCCCCCCCC
Q 038068           53 DIFDCPICFEPLTVP--VFQC-VNGHLACSDCCAKI---KRNCPTCSSPT   96 (269)
Q Consensus        53 ~~l~C~iC~~~l~~P--v~~c-~cgH~fC~~C~~~~---~~~Cp~C~~~~   96 (269)
                      +...|+||++.+...  +.+. .|||.||..|+.+|   +..||.||.++
T Consensus         4 d~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~Wl~~~~~CP~CR~~i   53 (55)
T d1iyma_           4 DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTV   53 (55)
T ss_dssp             CSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCS
T ss_pred             CCCCCeEECccccCCCEEEEeCCCCCcccHHHHHHHHHhCCcCCCCCCEe
Confidence            456899999998753  3344 59999999999999   57899999875

>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Deltex protein 2 RING-H2 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.22  E-value=3.9e-07  Score=67.17  Aligned_cols=45  Identities=27%  Similarity=0.389  Sum_probs=35.3

Q ss_pred             CeeeccCCCCCCcCc-----------------eeeccCCceechhchhhc---C-----CCCCCCCCCCc
Q 038068           53 DIFDCPICFEPLTVP-----------------VFQCVNGHLACSDCCAKI---K-----RNCPTCSSPTV   97 (269)
Q Consensus        53 ~~l~C~iC~~~l~~P-----------------v~~c~cgH~fC~~C~~~~---~-----~~Cp~C~~~~~   97 (269)
                      .+-.|+||++.|..+                 +...+|||.||..|+..|   +     ..||+||..+.
T Consensus        24 ~~~~C~IC~e~l~~~~~~~~~~~~~~~~~~~~~~~~~CgH~FH~~Ci~~Wl~~~~~~~~~~CP~CR~~~~   93 (114)
T d1v87a_          24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYG   93 (114)
T ss_dssp             CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSS
T ss_pred             ccccccchhheecccccccccccccccccccceEECCCCChhhHHHHHHHHHhcCcCCCCccccccchhc
Confidence            344799999987643                 345689999999999998   1     26999998765

>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.10  E-value=9.4e-07  Score=62.07  Aligned_cols=44  Identities=20%  Similarity=0.327  Sum_probs=34.4

Q ss_pred             eeccCCCCCCcC-----------------ceeeccCCceechhchhhc---CCCCCCCCCCCcc
Q 038068           55 FDCPICFEPLTV-----------------PVFQCVNGHLACSDCCAKI---KRNCPTCSSPTVI   98 (269)
Q Consensus        55 l~C~iC~~~l~~-----------------Pv~~c~cgH~fC~~C~~~~---~~~Cp~C~~~~~~   98 (269)
                      -.|+||++.+..                 ++...+|||.|+..|+.+|   ...||+||.++..
T Consensus        22 d~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~   85 (88)
T d3dplr1          22 DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEF   85 (88)
T ss_dssp             CCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBCCE
T ss_pred             CcCEEccchhhCccccccccccccccccCCeEEccccCcccHHHHHHHHHHCCcCCCCCCcccc
Confidence            358888776654                 2334579999999999999   5789999998753

>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: IE1B protein (ORF K3), N-terminal domain
species: Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]

Probab=97.87  E-value=2.8e-06  Score=55.05  Aligned_cols=47  Identities=26%  Similarity=0.446  Sum_probs=36.1

Q ss_pred             CCCeeeccCCCCCCcCceee-cc---CCceechhchhhc-----CCCCCCCCCCCc
Q 038068           51 DQDIFDCPICFEPLTVPVFQ-CV---NGHLACSDCCAKI-----KRNCPTCSSPTV   97 (269)
Q Consensus        51 ~~~~l~C~iC~~~l~~Pv~~-c~---cgH~fC~~C~~~~-----~~~Cp~C~~~~~   97 (269)
                      +.+...|+||++.+..+... |.   |+|.|+..|+.+|     ...||.||.++.
T Consensus         3 ded~~~C~IC~~~~~~~~~~~c~c~~c~h~~H~~Cl~~W~~~~~~~~CP~Cr~~~~   58 (60)
T d1vyxa_           3 DEDVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN   58 (60)
T ss_dssp             TCSCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred             CCCCCCCccCCccCCCceeEecccCCCCCEEcHHHHHHHHhhCCCCCCcccCCeee
Confidence            44667899999887766432 22   4699999999999     357999998764

>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: UbcM4-interacting protein 4 (KIAA0161)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.11  E-value=0.00011  Score=51.42  Aligned_cols=33  Identities=15%  Similarity=0.338  Sum_probs=24.9

Q ss_pred             CeeeccCCCCCCcC--ceeeccCCceechhchhhc
Q 038068           53 DIFDCPICFEPLTV--PVFQCVNGHLACSDCCAKI   85 (269)
Q Consensus        53 ~~l~C~iC~~~l~~--Pv~~c~cgH~fC~~C~~~~   85 (269)
                      ....|+||++.+..  .+....|||.||..|+..+
T Consensus         4 ~~~~C~IC~~~~~~~~~~~~~~C~H~fC~~Cl~~~   38 (94)
T d1wima_           4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQY   38 (94)
T ss_dssp             SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHH
T ss_pred             CCCcCccCCCcccCCceEEECCCCCEeCCcCHHHH
Confidence            34689999997743  2223479999999999876

>d1wfpa_ g.80.1.1 (A:) Zinc finger A20 and AN1 domains containing protein At1g12440 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: AN1-like Zinc finger
superfamily: AN1-like Zinc finger
family: AN1-like Zinc finger
domain: Zinc finger A20 and AN1 domains containing protein At1g12440
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=93.92  E-value=0.082  Score=34.51  Aligned_cols=42  Identities=19%  Similarity=0.324  Sum_probs=32.9

Q ss_pred             CeeeccCCCCCCcCceeeccCCceechhchhhcCCCCCCCCC
Q 038068           53 DIFDCPICFEPLTVPVFQCVNGHLACSDCCAKIKRNCPTCSS   94 (269)
Q Consensus        53 ~~l~C~iC~~~l~~Pv~~c~cgH~fC~~C~~~~~~~Cp~C~~   94 (269)
                      ....|.+|..-+....+.|.||+.||......-...|+..-.
T Consensus        24 kk~RC~~C~KKl~l~~~~CrCg~~FC~~HR~pe~H~C~fDyK   65 (74)
T d1wfpa_          24 TATRCLSCNKKVGVTGFKCRCGSTFCGTHRYPESHECQFDFK   65 (74)
T ss_dssp             CCCBCSSSCCBCTTTCEECTTSCEECTTTCSTTTSCCCSCTT
T ss_pred             CCCcChhcCCccCCCceecCCCChhhhccCCccCcCCCCcch
Confidence            346899999887766679999999999888665566766533

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.26  E-value=0.029  Score=29.67  Aligned_cols=25  Identities=24%  Similarity=0.594  Sum_probs=19.1

Q ss_pred             eeeeCCCCCCCCccC-hhHHhhhhhh
Q 038068          141 SPLPCPLSDCSFLGC-SSQFVRHFMA  165 (269)
Q Consensus       141 ~p~~Cp~~~C~~~g~-~~~l~~Hl~~  165 (269)
                      +|+.|+++||+..-. ...|..|.+.
T Consensus         1 rPf~C~~~gC~K~F~~~~~L~~H~r~   26 (28)
T d1ubdc4           1 RPYVCPFDGCNKKFAQSTNLKSHILT   26 (28)
T ss_dssp             CCCCCCSTTCCCCCSSTTTTHHHHHH
T ss_pred             CCcCCCCCCcCCcCCCHHHHHHHHhh
Confidence            478899999998755 4678888754

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.12  E-value=0.051  Score=29.62  Aligned_cols=25  Identities=20%  Similarity=0.445  Sum_probs=20.3

Q ss_pred             eeeeCCCCCCCCccC-hhHHhhhhhh
Q 038068          141 SPLPCPLSDCSFLGC-SSQFVRHFMA  165 (269)
Q Consensus       141 ~p~~Cp~~~C~~~g~-~~~l~~Hl~~  165 (269)
                      +|+.|+++||++.-. ...|..|.+.
T Consensus         2 rP~~C~~pgC~k~F~r~~~L~~H~r~   27 (32)
T d1zfda_           2 RPYSCDHPGCDKAFVRNHDLIRHKKS   27 (32)
T ss_dssp             CSBCCCCTTCCCCBSSSHHHHHHHGG
T ss_pred             cCeECcCCCCCCeeCCHHHHHHHhhh
Confidence            578999999998865 4689999654

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.65  E-value=0.061  Score=28.61  Aligned_cols=25  Identities=28%  Similarity=0.616  Sum_probs=19.7

Q ss_pred             eeeeCCCCCCCCccC-hhHHhhhhhh
Q 038068          141 SPLPCPLSDCSFLGC-SSQFVRHFMA  165 (269)
Q Consensus       141 ~p~~Cp~~~C~~~g~-~~~l~~Hl~~  165 (269)
                      +|+.|+++||+..-. ...|..|.+.
T Consensus         1 Kp~~C~~~gC~k~F~~~~~L~~H~r~   26 (29)
T d1a1ia1           1 RPYACPVESCDRRFSRSADLTRHIRI   26 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHTHH
T ss_pred             CCeECCCCCCCcEECchhHhhhhcCc
Confidence            478999999998755 5679999753

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.16  E-value=0.068  Score=28.85  Aligned_cols=25  Identities=28%  Similarity=0.390  Sum_probs=20.2

Q ss_pred             eeeeCCCCCCCCccC-hhHHhhhhhh
Q 038068          141 SPLPCPLSDCSFLGC-SSQFVRHFMA  165 (269)
Q Consensus       141 ~p~~Cp~~~C~~~g~-~~~l~~Hl~~  165 (269)
                      +|+.||+++|+..-. ...|..|.+.
T Consensus         1 kpf~C~~~~C~k~F~~~~~L~~H~r~   26 (31)
T d1sp2a_           1 RPFMCTWSYCGKRFTRSDELQRHKRT   26 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTT
T ss_pred             CcCCCcCCCCCcCcCChhHhhhhcCc
Confidence            478999999998765 5689999864

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.97  E-value=0.08  Score=28.32  Aligned_cols=25  Identities=16%  Similarity=0.355  Sum_probs=20.2

Q ss_pred             eeeeCCCCCCCCccC-hhHHhhhhhh
Q 038068          141 SPLPCPLSDCSFLGC-SSQFVRHFMA  165 (269)
Q Consensus       141 ~p~~Cp~~~C~~~g~-~~~l~~Hl~~  165 (269)
                      +|+.|++++|+..-. ...|..|.+.
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~   26 (30)
T d1ubdc3           1 KPFQCTFEGCGKRFSLDFNLRTHVRI   26 (30)
T ss_dssp             CCEECCSTTCCCEESCHHHHHHHHHH
T ss_pred             CCccCCCCCCCceECcHHHcCccccc
Confidence            478999999998755 5689999864

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.62  E-value=0.086  Score=28.21  Aligned_cols=25  Identities=16%  Similarity=0.367  Sum_probs=19.9

Q ss_pred             eeeeCCCCCCCCccC-hhHHhhhhhh
Q 038068          141 SPLPCPLSDCSFLGC-SSQFVRHFMA  165 (269)
Q Consensus       141 ~p~~Cp~~~C~~~g~-~~~l~~Hl~~  165 (269)
                      +|+.|+++||+..-. ...|..|++.
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~   26 (30)
T d2glia3           1 KPHKCTFEGCRKSYSRLENLKTHLRS   26 (30)
T ss_dssp             CCCCCCSTTCCCCCSSHHHHHHHHHH
T ss_pred             CCeeCCCCCCCceECChhHhhhhcCc
Confidence            478899999998865 5689999763

>d1wfla_ g.80.1.1 (A:) Zinc finger A20 domain containing protein 2 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: AN1-like Zinc finger
superfamily: AN1-like Zinc finger
family: AN1-like Zinc finger
domain: Zinc finger A20 domain containing protein 2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.71  E-value=0.29  Score=31.75  Aligned_cols=39  Identities=28%  Similarity=0.497  Sum_probs=28.2

Q ss_pred             eeeccCCCCCCcCceeeccCCceechhchhhcCCCCCCC
Q 038068           54 IFDCPICFEPLTVPVFQCVNGHLACSDCCAKIKRNCPTC   92 (269)
Q Consensus        54 ~l~C~iC~~~l~~Pv~~c~cgH~fC~~C~~~~~~~Cp~C   92 (269)
                      ...|.+|..-+..--+.|.||..||......-...|...
T Consensus        25 ~~RC~~C~KKl~l~~~~CrCg~~FC~~HR~pe~H~CtfD   63 (74)
T d1wfla_          25 KNRCFMCRKKVGLTGFDCRCGNLFCGLHRYSDKHNCPYD   63 (74)
T ss_dssp             TTBCSSSCCBCGGGCEECTTSCEECSSSCSTTTTTCCCC
T ss_pred             CCcChhhCCcccceeeEccCCCEehhhcCCCcCcCCCCc
Confidence            458999997665433589999999998776544556554

>d1wffa_ g.80.1.1 (A:) ANUBL1 (AN1, ubiquitin-like, homolog) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: AN1-like Zinc finger
superfamily: AN1-like Zinc finger
family: AN1-like Zinc finger
domain: ANUBL1 (AN1, ubiquitin-like, homolog)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.15  E-value=0.51  Score=31.42  Aligned_cols=40  Identities=18%  Similarity=0.370  Sum_probs=30.8

Q ss_pred             eeeccCCCCCCcC--ceeeccCCceechhchhhcCCCCCCCCC
Q 038068           54 IFDCPICFEPLTV--PVFQCVNGHLACSDCCAKIKRNCPTCSS   94 (269)
Q Consensus        54 ~l~C~iC~~~l~~--Pv~~c~cgH~fC~~C~~~~~~~Cp~C~~   94 (269)
                      .-.|.+|..-+..  + +.|.||+.||......-...|+..-.
T Consensus        25 ~~RC~~C~KKl~l~~~-~~CrCg~~FC~~HR~pe~H~CtfDyK   66 (85)
T d1wffa_          25 MKHCFLCGKKTGLATS-FECRCGNNFCASHRYAEAHGCNYDYK   66 (85)
T ss_dssp             CCBCSSSCCBCSSSSC-EECTTCCEECTTTCSTGGGTCCSCCS
T ss_pred             CCcChhcCCeecCCcC-eecCCCCEehhhcCCCcCcCCCcchH
Confidence            3489999988764  4 58999999999988765567776543

>d1z60a1 g.49.1.2 (A:328-386) TFIIH p44 subunit cysteine-rich domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Cysteine-rich domain
superfamily: Cysteine-rich domain
family: TFIIH p44 subunit cysteine-rich domain
domain: TFIIH p44 subunit cysteine-rich domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.45  E-value=0.19  Score=31.14  Aligned_cols=40  Identities=28%  Similarity=0.592  Sum_probs=30.7

Q ss_pred             CeeeccCCCCCCcCc-eeecc-CCceechhchhhc---CCCCCCC
Q 038068           53 DIFDCPICFEPLTVP-VFQCV-NGHLACSDCCAKI---KRNCPTC   92 (269)
Q Consensus        53 ~~l~C~iC~~~l~~P-v~~c~-cgH~fC~~C~~~~---~~~Cp~C   92 (269)
                      ....|.-|...+.+. +++|+ |++.||..|=.-+   -..||.|
T Consensus        14 ~~~~C~gC~~~l~~~~~y~C~~C~~~FC~dCD~fiHe~lh~CpgC   58 (59)
T d1z60a1          14 GERFCYGCQGELKDQHVYVCAVCQNVFCVDCDVFVHDSLHSCPGC   58 (59)
T ss_dssp             SCCEETTTTEECTTSEEECCTTTTCCBCHHHHHTTTTTSCSSSTT
T ss_pred             CCCCccCCCCcCCCCceEECcCCCCccccccchhhhhhhcCCCCC
Confidence            345799999888755 68886 9999999995433   3678887

>d1wfha_ g.80.1.1 (A:) Zinc finger A20 and AN1 domains containing protein At2g36320 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: AN1-like Zinc finger
superfamily: AN1-like Zinc finger
family: AN1-like Zinc finger
domain: Zinc finger A20 and AN1 domains containing protein At2g36320
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=84.73  E-value=0.99  Score=28.24  Aligned_cols=42  Identities=17%  Similarity=0.310  Sum_probs=30.6

Q ss_pred             CeeeccCCCCCCcCceeeccCCceechhchhhcCCCCCCCCC
Q 038068           53 DIFDCPICFEPLTVPVFQCVNGHLACSDCCAKIKRNCPTCSS   94 (269)
Q Consensus        53 ~~l~C~iC~~~l~~Pv~~c~cgH~fC~~C~~~~~~~Cp~C~~   94 (269)
                      ..-.|..|..-+..--++|.||+.||..-...-...|...-.
T Consensus        14 k~~RC~~C~KKl~l~~~~CrCg~~FC~~HR~pe~H~CtfDyK   55 (64)
T d1wfha_          14 RPNRCTVCRKRVGLTGFMCRCGTTFCGSHRYPEVHGCTFDFK   55 (64)
T ss_dssp             SCCCCTTTCCCCCTTCEECSSSCEECTTTCSTTTTTCCCCCS
T ss_pred             CCCcChhhCCCccceeeeccCCCEehhhcCCCcCcCCCCcch
Confidence            345899999877653368999999999887655556766533

>d2cs3a1 g.44.1.3 (A:8-87) Protein c14orf4 (KIAA1865) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: Protein c14orf4 (KIAA1865)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.24  E-value=1.1  Score=28.46  Aligned_cols=33  Identities=30%  Similarity=0.598  Sum_probs=26.5

Q ss_pred             CeeeccCCCCCCcCc-eeecc--CCceechhchhhc
Q 038068           53 DIFDCPICFEPLTVP-VFQCV--NGHLACSDCCAKI   85 (269)
Q Consensus        53 ~~l~C~iC~~~l~~P-v~~c~--cgH~fC~~C~~~~   85 (269)
                      ..|.|.+|.+-|.+. ..||+  -+|.||-.|....
T Consensus         7 ~~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~s   42 (80)
T d2cs3a1           7 GPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRES   42 (80)
T ss_dssp             CSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHH
T ss_pred             CceeeeeehhhhcCCceEeCCCCcCCceeccccHHH
Confidence            558999999999877 34776  5799999997543

>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.91  E-value=0.46  Score=24.69  Aligned_cols=28  Identities=25%  Similarity=0.443  Sum_probs=22.4

Q ss_pred             eeeeCCCCCCCCcc-ChhHHhhhhhhhCC
Q 038068          141 SPLPCPLSDCSFLG-CSSQFVRHFMAKHN  168 (269)
Q Consensus       141 ~p~~Cp~~~C~~~g-~~~~l~~Hl~~~H~  168 (269)
                      .|+.|...||+-.. ....|..|+.+.|.
T Consensus         1 KPY~Ck~~gC~K~YtdPSSLRKH~k~~HG   29 (29)
T d2glia5           1 KPYVCKLPGCTKRYTDPSSLRKHVKTVHG   29 (29)
T ss_dssp             CCEECCSTTTCCEESSHHHHHHHHHHSCC
T ss_pred             CCeecccCCCCcccCCHHHHHHHHHhhCC
Confidence            37889999998664 46789999998873

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=82.71  E-value=0.35  Score=28.49  Aligned_cols=39  Identities=10%  Similarity=0.090  Sum_probs=27.8

Q ss_pred             cccchhhhhccCCCeeeeCCCCCCCCccC-hhHHhhhhhh
Q 038068          127 SFSKKRGHEKTCQHSPLPCPLSDCSFLGC-SSQFVRHFMA  165 (269)
Q Consensus       127 ~~~~~~~He~~C~~~p~~Cp~~~C~~~g~-~~~l~~Hl~~  165 (269)
                      +...+..|...=.-+|+.|++++|+.... ...|..|.+.
T Consensus         3 p~~~l~~h~~h~gekpy~C~~~~C~k~F~~~~~L~~H~r~   42 (47)
T d1ncsa_           3 PRGSIDKYVKEMPDKTFECLFPGCTKTFKRRYNIRSHIQT   42 (47)
T ss_dssp             CCSSGGGSCEEETTTEEECCCTTCCCEECSSSSHHHHHHH
T ss_pred             CcchhcchhhccCCCCeECCcCCCCccccCchHHHhhccc
Confidence            34455556554455899999989998765 4679999754

>d2jnea1 g.41.18.1 (A:1-71) Hypothetical protein YfgJ {Escherichia coli [TaxId: 562]}

class: Small proteins
fold: Rubredoxin-like
superfamily: YfgJ-like
family: YfgJ-like
domain: Hypothetical protein YfgJ
species: Escherichia coli [TaxId: 562]

Probab=81.65  E-value=0.16  Score=32.61  Aligned_cols=39  Identities=38%  Similarity=0.817  Sum_probs=29.6

Q ss_pred             eeeccCCCCCCcCceeeccCCceechhchhhc--CCCCCCCCCCCc
Q 038068           54 IFDCPICFEPLTVPVFQCVNGHLACSDCCAKI--KRNCPTCSSPTV   97 (269)
Q Consensus        54 ~l~C~iC~~~l~~Pv~~c~cgH~fC~~C~~~~--~~~Cp~C~~~~~   97 (269)
                      .+.||.|...|..     .-||..|..|-...  ...||.|..++.
T Consensus         2 ~~~CP~C~~eL~~-----~~~~~~C~~C~~~~~~~a~CPdC~~~Le   42 (71)
T d2jnea1           2 ELHCPQCQHVLDQ-----DNGHARCRSCGEFIEMKALCPDCHQPLQ   42 (71)
T ss_dssp             CCBCSSSCSBEEE-----ETTEEEETTTCCEEEEEEECTTTCSBCE
T ss_pred             CCcCCCccCcccc-----cCCCEehhhhhhhheeEEeCCccccHHH
Confidence            3689999987543     24788999998766  457999988764

>d2ct7a1 g.44.1.4 (A:8-80) Ring finger protein 31 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: IBR domain
domain: Ring finger protein 31
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.05  E-value=0.54  Score=30.21  Aligned_cols=36  Identities=17%  Similarity=0.293  Sum_probs=26.8

Q ss_pred             CCCCeeeccCCCCCCc----Cceeec-cCCceechhchhhc
Q 038068           50 TDQDIFDCPICFEPLT----VPVFQC-VNGHLACSDCCAKI   85 (269)
Q Consensus        50 ~~~~~l~C~iC~~~l~----~Pv~~c-~cgH~fC~~C~~~~   85 (269)
                      .++...-||-|..++.    .+.++| .||+.||..|...|
T Consensus        14 ~~~~~k~CP~C~~~~~~~~~~~~~~C~~C~~~fC~~C~~~w   54 (73)
T d2ct7a1          14 RDPKFLWCAQCSFGFIYEREQLEATCPQCHQTFCVRCKRQW   54 (73)
T ss_dssp             SCCCEECCSSSCCCEECCCSCSCEECTTTCCEECSSSCSBC
T ss_pred             HCCCCCCCCCCCCEeEECCCCCEEEcCCCCCeECcccCcch
Confidence            3456777999988653    334567 69999999998887