Citrus Sinensis ID: 038129

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------12
Protein Sequence
RCAACRHLRRRCPSDCIFAPYFPANDPHRFACVHKIYGSSKVGNMLQDLPVELRAEAADAICIEAECRVQDPVYGCVRMISLLQQQIHNAESQLVKARAEIAVLGSHAQELRHHVQDI
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccHHHHHHHHHHHccHHHHHHHccccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHcccccEEccccccccHHHHHHHHHHHcHHHHHHHHHHccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccc
Coil and Loop (DISEMBL)
rcaacrhlrrrcpsdcifapyfpandphrfaCVHKIygsskvgnmlqDLPVELRAEAADAICIEAecrvqdpvyGCVRMISLLQQQIHNAESQLVKARAEIAVLGSHAQELRHHVQDI
Flexible Loop (DISEMBL)
rcaacrhlrrrcpsdciFAPYFPANDPHRFACVHKIYGSSKVGNMLQDLPVELRAEAADAICIEAECRVQDPVYGCVRMISLLQQQIHNAESQLVKARAEIAVLGSHAQELRHHVQDI
Low Complexity Region (SEG)
rcaacrhlrrrcPSDCIFAPYFPANDPHRFACVHKIYGSSKVGNMLQDLPVELRaeaadaicieaecRVQDPVYGCVRMISLLQQQIHNAESQLVKARAEIAVLGSHAQELRHHVQDI
Disordered region (IsUnstruct)
***ACRHLRRRCPSDCIFAPYFPANDPHRFACVHKIYGSSKVGNMLQDLPVELRAEAADAICIEAECRVQDPVYGCVRMISLLQQQIHNAESQLVKARAEIAVLG*************
Disordered Region (DISOPRED)
RCAACRHLRRRCPSDCIFAPYFPANDPHRFACVHKIYGSSKVGNMLQDLPVELRAEAADAICIEAECRVQDPVYGCVRMISLLQQQIHNAESQLVKARAEIAV***************
Disordered Region (DISEMBL)
********RRRCPSDCIFAPYFPANDPHRFACVHKIYGSSKVGNMLQDLPVELRAEAADAICIEAECRVQDPVYGCVRMISLLQQQIHNAESQLVKARAEIAVLGSHAQELRHHVQDI
Disordered Region (DISPRO)
RCAACRHLRRRCPSDCIFAPYFPANDPHRFACVHKIYGSSKVGNMLQDLPVELRAEAADAICIEAECRVQDPVYGCVRMISLLQQQIHNAESQLVKARAEIAVLGSHAQ*********
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
RCAACRHLRRRCPSDCIFAPYFPANDPHRFACVHKIYGSSKVGNMLQDLPVELRAEAADAICIEAECRVQDPVYGCVRMxxxxxxxxxxxxxxxxxxxxxIAVLGSHAQELRHHVQDI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	118	2.2.26 [Sep-21-2011]
P59467	121	LOB domain-containing pro	yes	no	0.983	0.958	0.559	3e-36
P59468	121	LOB domain-containing pro	yes	no	0.957	0.933	0.566	4e-36
Q8LBW3	193	LOB domain-containing pro	no	no	0.847	0.518	0.59	1e-30
Q9FML4	186	Protein LATERAL ORGAN BOU	no	no	0.881	0.559	0.519	3e-26
Q9SA51	165	LOB domain-containing pro	no	no	0.847	0.606	0.524	5e-26
Q9SHE9	172	LOB domain-containing pro	no	no	0.728	0.5	0.581	5e-26
O64836	311	LOB domain-containing pro	no	no	0.906	0.344	0.444	1e-25
Q9FKZ3	313	LOB domain-containing pro	no	no	0.864	0.325	0.460	9e-25
Q9AT61	268	LOB domain-containing pro	no	no	0.906	0.399	0.439	4e-24
Q8L8Q3	159	LOB domain-containing pro	no	no	0.847	0.628	0.47	7e-24

>sp|P59467|LBD23_ARATH LOB domain-containing protein 23 OS=Arabidopsis thaliana GN=LBD23 PE=2 SV=1

 Score =  149 bits (377), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 66/118 (55%), Positives = 87/118 (73%), Gaps = 2/118 (1%)

Query: 1   RCAACRHLRRRCPSDCIFAPYFPANDPHRFACVHKIYGSSKVGNMLQDLPVELRAEAADA 60
           RCAAC++LRRRCP DC+F+PYFP NDP +FACVH+IYG+  V  MLQ LP + RAEA ++
Sbjct: 5   RCAACKYLRRRCPKDCVFSPYFPPNDPQKFACVHRIYGAGNVSKMLQQLPDQTRAEAVES 64

Query: 61  ICIEAECRVQDPVYGCVRMISLLQQQIHNAESQLVKARAEIAVLGSHAQELRHHVQDI 118
           +C EA+CRV DPVYGCV +I LL+ QI   +++L K +AEIAV  +   +   H+ D 
Sbjct: 65  LCFEAKCRVDDPVYGCVGIIHLLKTQIQKTQNELAKTQAEIAVAQTKLSQT--HISDF 120

Arabidopsis thaliana (taxid: 3702)

>sp|P59468|LBD24_ARATH LOB domain-containing protein 24 OS=Arabidopsis thaliana GN=LBD24 PE=2 SV=1

 Score =  149 bits (377), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 64/113 (56%), Positives = 86/113 (76%)

Query: 1   RCAACRHLRRRCPSDCIFAPYFPANDPHRFACVHKIYGSSKVGNMLQDLPVELRAEAADA 60
           RCAAC++LRRRCP DC+F+PYFP NDP +FACVH+IYG+  V  MLQ LP + RAEA ++
Sbjct: 5   RCAACKYLRRRCPKDCVFSPYFPPNDPQKFACVHRIYGAGNVSKMLQQLPDQTRAEAVES 64

Query: 61  ICIEAECRVQDPVYGCVRMISLLQQQIHNAESQLVKARAEIAVLGSHAQELRH 113
           +C EA+CRV DPVYGCV +I LL+ QI   +++L K +AEIAV  +   + ++
Sbjct: 65  LCFEAKCRVDDPVYGCVGIIHLLKTQIQKTQNELAKTQAEIAVAQTKLSQTQN 117

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LBW3|LBD12_ARATH LOB domain-containing protein 12 OS=Arabidopsis thaliana GN=LBD12 PE=2 SV=2

 Score =  131 bits (329), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 59/100 (59%), Positives = 75/100 (75%)

Query: 2   CAACRHLRRRCPSDCIFAPYFPANDPHRFACVHKIYGSSKVGNMLQDLPVELRAEAADAI 61
           CA+C+ LRRRC  DCIFAPYFP +DPH+FA VHK++G+S V  MLQ+LPV  RA+A +++
Sbjct: 9   CASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRADAVNSL 68

Query: 62  CIEAECRVQDPVYGCVRMISLLQQQIHNAESQLVKARAEI 101
             EA  RV+DPVYGCV  IS LQ Q+   + QL  A+AEI
Sbjct: 69  VFEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEI 108

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FML4|LOB_ARATH Protein LATERAL ORGAN BOUNDARIES OS=Arabidopsis thaliana GN=LOB PE=2 SV=1

 Score =  117 bits (292), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 54/104 (51%), Positives = 73/104 (70%)

Query: 2   CAACRHLRRRCPSDCIFAPYFPANDPHRFACVHKIYGSSKVGNMLQDLPVELRAEAADAI 61
           CAAC+ LRR+C   CIFAPYFP  +PH+FA VHKI+G+S V  +L +L    R +A +++
Sbjct: 12  CAACKFLRRKCMPGCIFAPYFPPEEPHKFANVHKIFGASNVTKLLNELLPHQREDAVNSL 71

Query: 62  CIEAECRVQDPVYGCVRMISLLQQQIHNAESQLVKARAEIAVLG 105
             EAE RV+DPVYGCV  IS LQ+Q+H  + +L  A A++A  G
Sbjct: 72  AYEAEARVRDPVYGCVGAISYLQRQVHRLQKELDAANADLAHYG 115

Not known; ectopic expression of LOB leads to alterations in the size and shape of leaves and floral organs and causes male and female sterility.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SA51|LBD3_ARATH LOB domain-containing protein 3 OS=Arabidopsis thaliana GN=LBD3 PE=2 SV=1

 Score =  116 bits (290), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 53/101 (52%), Positives = 73/101 (72%), Gaps = 1/101 (0%)

Query: 2   CAACRHLRRRCPSD-CIFAPYFPANDPHRFACVHKIYGSSKVGNMLQDLPVELRAEAADA 60
           CA C+ LRR+C  D C+FAPYFPA +P++FA VHKI+G+S V  MLQ+L    R++A D+
Sbjct: 15  CAGCKLLRRKCVKDSCVFAPYFPAKEPYKFAIVHKIFGASNVNKMLQELSENHRSDAVDS 74

Query: 61  ICIEAECRVQDPVYGCVRMISLLQQQIHNAESQLVKARAEI 101
           +  EA  R+QDPVYGCV  IS L +Q+   ++QL  A+AE+
Sbjct: 75  MVYEANARIQDPVYGCVGTISSLHRQLETLQTQLAFAQAEL 115

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SHE9|LBD4_ARATH LOB domain-containing protein 4 OS=Arabidopsis thaliana GN=LBD4 PE=2 SV=1

 Score =  116 bits (290), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 50/86 (58%), Positives = 66/86 (76%)

Query: 2  CAACRHLRRRCPSDCIFAPYFPANDPHRFACVHKIYGSSKVGNMLQDLPVELRAEAADAI 61
          CAAC+ LRRRC  DC+F+PYFPA++P +FA VH+++G+S V  MLQ+LP+  R +A  ++
Sbjct: 14 CAACKLLRRRCAQDCVFSPYFPADEPQKFANVHRVFGASNVNKMLQELPIHQRGDAVSSM 73

Query: 62 CIEAECRVQDPVYGCVRMISLLQQQI 87
            EA  RV+DPVYGCV  IS LQQQI
Sbjct: 74 VYEANARVRDPVYGCVGAISSLQQQI 99

Arabidopsis thaliana (taxid: 3702)

>sp|O64836|LBD10_ARATH LOB domain-containing protein 10 OS=Arabidopsis thaliana GN=LBD10 PE=2 SV=1

 Score =  115 bits (287), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 48/108 (44%), Positives = 73/108 (67%), Gaps = 1/108 (0%)

Query: 2   CAACRHLRRRCPSDCIFAPYFPANDPHRFACVHKIYGSSKVGNMLQDLPVELRAEAADAI 61
           CAAC+ LRR+C  +C+FAPYFP  +P +F  VH+++G+S V  +L DLP + R +  +++
Sbjct: 6   CAACKLLRRKCTQECVFAPYFPPTNPQKFIFVHRVFGASNVTKILNDLPPDQREDTVNSL 65

Query: 62  CIEAECRVQDPVYGCVRMISLLQQQIHNAESQLVKARAE-IAVLGSHA 108
             EAE R++DP+YGCV +IS LQQ +   +  L+ A+ E +  LG  A
Sbjct: 66  FYEAEARIRDPIYGCVGLISFLQQYLKKIQQDLLTAKEELVGYLGPDA 113

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FKZ3|LBD36_ARATH LOB domain-containing protein 36 OS=Arabidopsis thaliana GN=LBD36 PE=2 SV=1

 Score =  112 bits (279), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 47/102 (46%), Positives = 70/102 (68%)

Query: 2   CAACRHLRRRCPSDCIFAPYFPANDPHRFACVHKIYGSSKVGNMLQDLPVELRAEAADAI 61
           CAAC+ LRR+C  +C+FAPYFP + P +FA VHK++G+S V  +L +L    R +A +++
Sbjct: 8   CAACKFLRRKCTQECVFAPYFPPDQPQKFAFVHKVFGASNVAKLLNELASNQREDAVNSL 67

Query: 62  CIEAECRVQDPVYGCVRMISLLQQQIHNAESQLVKARAEIAV 103
             EAE R++DPVYGCV +IS+LQ ++      L  A+ E+A 
Sbjct: 68  FYEAEARLRDPVYGCVGLISILQHRLKQVNHDLENAKKELAT 109

Controls the proximal-distal patterning in petals and the adaxial-abaxial determination of leaves. Involved in the repression of the homeobox gene BP.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9AT61|LBD13_ARATH LOB domain-containing protein 13 OS=Arabidopsis thaliana GN=LBD13 PE=2 SV=2

 Score =  109 bits (273), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 51/116 (43%), Positives = 74/116 (63%), Gaps = 9/116 (7%)

Query: 2   CAACRHLRRRCPSDCIFAPYFPANDPHRFACVHKIYGSSKVGNMLQDLPVELRAEAADAI 61
           CAAC+ LRRRC  +C F+PYF  ++PH+FA VHK++G+S V  ML ++    R +AA+++
Sbjct: 53  CAACKLLRRRCAEECPFSPYFSPHEPHKFAAVHKVFGASNVSKMLLEVGESQRGDAANSL 112

Query: 62  CIEAECRVQDPVYGCVRMISLLQQQIHNAESQLVKARAEIAVLGSHAQELRHHVQD 117
             EA  R++DP+YGC+  IS LQ  I + +S+L   R EI         LRH  Q+
Sbjct: 113 VYEANLRLRDPIYGCMGAISALQHHIQSLQSELTTVRTEI---------LRHKYQE 159

Arabidopsis thaliana (taxid: 3702)

>sp|Q8L8Q3|LBD25_ARATH LOB domain-containing protein 25 OS=Arabidopsis thaliana GN=LBD25 PE=2 SV=3

 Score =  108 bits (271), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 47/100 (47%), Positives = 72/100 (72%)

Query: 2   CAACRHLRRRCPSDCIFAPYFPANDPHRFACVHKIYGSSKVGNMLQDLPVELRAEAADAI 61
           CAAC+ LRR+C SDC+FAPYFP  +P +FA VH+I+G+S V  +L ++    R +A +++
Sbjct: 40  CAACKFLRRKCTSDCVFAPYFPPEEPTKFANVHRIFGASNVSKILHEVAPHQREDAVNSL 99

Query: 62  CIEAECRVQDPVYGCVRMISLLQQQIHNAESQLVKARAEI 101
             EAE R++DPVYGCV  IS+LQ+Q+   + +L +  A++
Sbjct: 100 AYEAEARLKDPVYGCVGAISVLQRQVLRLQRELEETNADL 139

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	118
255579757	117	LOB domain-containing protein, putative	0.940	0.948	0.729	1e-42
224136874	103	predicted protein [Populus trichocarpa]	0.872	1.0	0.708	8e-38
224120146	103	predicted protein [Populus trichocarpa]	0.872	1.0	0.708	9e-38
449461383	147	PREDICTED: LOB domain-containing protein	0.957	0.768	0.592	6e-36
449446189	154	PREDICTED: LOB domain-containing protein	0.932	0.714	0.618	1e-35
449516713	151	PREDICTED: LOB domain-containing protein	0.932	0.728	0.618	1e-35
225455463	153	PREDICTED: LOB domain-containing protein	0.898	0.692	0.622	1e-34
15231591	121	LOB domain-containing protein 23 [Arabid	0.983	0.958	0.559	1e-34
15231595	121	LOB domain-containing protein 24 [Arabid	0.957	0.933	0.566	2e-34
357494555	145	LOB domain-containing protein [Medicago	0.864	0.703	0.627	4e-33

>gi|255579757|ref|XP_002530717.1| LOB domain-containing protein, putative [Ricinus communis] gi|223529731|gb|EEF31671.1| LOB domain-containing protein, putative [Ricinus communis]

 Score =  176 bits (447), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 81/111 (72%), Positives = 96/111 (86%)

Query: 1   RCAACRHLRRRCPSDCIFAPYFPANDPHRFACVHKIYGSSKVGNMLQDLPVELRAEAADA 60
           RCAAC++LRRRCPSDCIF+PYFP++DP RFACVHKIYG+S VG +LQ LP  LRA AAD+
Sbjct: 5   RCAACKYLRRRCPSDCIFSPYFPSSDPQRFACVHKIYGASNVGKLLQQLPAYLRASAADS 64

Query: 61  ICIEAECRVQDPVYGCVRMISLLQQQIHNAESQLVKARAEIAVLGSHAQEL 111
           +  EA+CR+QDPVYGCV +ISLL QQIHNAE+QL K RAEIAVL S AQ++
Sbjct: 65  LYYEAQCRIQDPVYGCVGVISLLHQQIHNAENQLAKTRAEIAVLSSFAQDI 115

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224136874|ref|XP_002322437.1| predicted protein [Populus trichocarpa] gi|222869433|gb|EEF06564.1| predicted protein [Populus trichocarpa]

 Score =  160 bits (405), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 73/103 (70%), Positives = 88/103 (85%)

Query: 1   RCAACRHLRRRCPSDCIFAPYFPANDPHRFACVHKIYGSSKVGNMLQDLPVELRAEAADA 60
           RCAAC++LRRRCPSDCIF+PYFP+N+P RFACVH+I+G+S V  MLQ LP  LRAEAA++
Sbjct: 1   RCAACKYLRRRCPSDCIFSPYFPSNNPRRFACVHRIHGASNVAKMLQQLPAHLRAEAANS 60

Query: 61  ICIEAECRVQDPVYGCVRMISLLQQQIHNAESQLVKARAEIAV 103
           +  EA+CR QDPVYGCV ++SLL QQIH+ ESQL K RAEIAV
Sbjct: 61  LYYEAQCRTQDPVYGCVGILSLLHQQIHSVESQLAKTRAEIAV 103

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224120146|ref|XP_002318256.1| predicted protein [Populus trichocarpa] gi|222858929|gb|EEE96476.1| predicted protein [Populus trichocarpa]

 Score =  160 bits (405), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 73/103 (70%), Positives = 86/103 (83%)

Query: 1   RCAACRHLRRRCPSDCIFAPYFPANDPHRFACVHKIYGSSKVGNMLQDLPVELRAEAADA 60
           RCAAC++LRRRCPSDCIF+PYFP+N+P RFACVH+IYG+S V  MLQ LP  LRAEAA++
Sbjct: 1   RCAACKYLRRRCPSDCIFSPYFPSNNPQRFACVHRIYGASNVAKMLQQLPAHLRAEAANS 60

Query: 61  ICIEAECRVQDPVYGCVRMISLLQQQIHNAESQLVKARAEIAV 103
           +  EA+ R QDPVYGCV +ISLL QQIH  ESQL K +AEIAV
Sbjct: 61  LYYEAQSRTQDPVYGCVGIISLLHQQIHGVESQLAKTKAEIAV 103

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449461383|ref|XP_004148421.1| PREDICTED: LOB domain-containing protein 24-like [Cucumis sativus] gi|449507297|ref|XP_004162991.1| PREDICTED: LOB domain-containing protein 24-like [Cucumis sativus]

 Score =  154 bits (389), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 67/113 (59%), Positives = 92/113 (81%)

Query: 1   RCAACRHLRRRCPSDCIFAPYFPANDPHRFACVHKIYGSSKVGNMLQDLPVELRAEAADA 60
           RCAAC++LRRRC S+CIF+PYFP+N+P RFA VH+IYG+S V   LQ +P++LR EAA+ 
Sbjct: 5   RCAACKYLRRRCSSNCIFSPYFPSNNPQRFAIVHRIYGASNVAKFLQQVPMDLRGEAAET 64

Query: 61  ICIEAECRVQDPVYGCVRMISLLQQQIHNAESQLVKARAEIAVLGSHAQELRH 113
           +  EA+CR++DP+YGCV +IS LQ ++H AE+QL K RAEIA+L S+ Q+ +H
Sbjct: 65  LYFEAKCRIEDPIYGCVGIISQLQYELHVAETQLAKTRAEIALLASNRQQAQH 117

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449446189|ref|XP_004140854.1| PREDICTED: LOB domain-containing protein 24-like [Cucumis sativus]

 Score =  153 bits (387), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 68/110 (61%), Positives = 87/110 (79%)

Query: 1   RCAACRHLRRRCPSDCIFAPYFPANDPHRFACVHKIYGSSKVGNMLQDLPVELRAEAADA 60
           RCAAC++LRRRCPSDCIF+P+FP+N+P RF  VH+IYG+S V   L  LP  LRAEAA+ 
Sbjct: 5   RCAACKYLRRRCPSDCIFSPFFPSNNPQRFTIVHRIYGASNVAKFLHQLPTHLRAEAAET 64

Query: 61  ICIEAECRVQDPVYGCVRMISLLQQQIHNAESQLVKARAEIAVLGSHAQE 110
           +  EA+CR++DPVYGCV +IS LQ ++H AE+QL K RAEIA + S+ QE
Sbjct: 65  LIFEAKCRIEDPVYGCVGIISQLQHELHVAETQLAKTRAEIACVASNVQE 114

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449516713|ref|XP_004165391.1| PREDICTED: LOB domain-containing protein 24-like [Cucumis sativus]

 Score =  153 bits (387), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 68/110 (61%), Positives = 87/110 (79%)

Query: 1   RCAACRHLRRRCPSDCIFAPYFPANDPHRFACVHKIYGSSKVGNMLQDLPVELRAEAADA 60
           RCAAC++LRRRCPSDCIF+P+FP+N+P RF  VH+IYG+S V   L  LP  LRAEAA+ 
Sbjct: 5   RCAACKYLRRRCPSDCIFSPFFPSNNPQRFTIVHRIYGASNVAKFLHQLPTHLRAEAAET 64

Query: 61  ICIEAECRVQDPVYGCVRMISLLQQQIHNAESQLVKARAEIAVLGSHAQE 110
           +  EA+CR++DPVYGCV +IS LQ ++H AE+QL K RAEIA + S+ QE
Sbjct: 65  LIFEAKCRIEDPVYGCVGIISQLQHELHVAETQLAKTRAEIACVASNVQE 114

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225455463|ref|XP_002274838.1| PREDICTED: LOB domain-containing protein 24 [Vitis vinifera] gi|297741110|emb|CBI31841.3| unnamed protein product [Vitis vinifera]

 Score =  150 bits (378), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 66/106 (62%), Positives = 85/106 (80%)

Query: 1   RCAACRHLRRRCPSDCIFAPYFPANDPHRFACVHKIYGSSKVGNMLQDLPVELRAEAADA 60
           RCAAC++LRRRCP DCIF+ YFP+NDP RFA VH+IYG+S +G MLQ +P  LRAEA ++
Sbjct: 4   RCAACKYLRRRCPPDCIFSSYFPSNDPQRFASVHRIYGASNIGKMLQQIPPHLRAEATES 63

Query: 61  ICIEAECRVQDPVYGCVRMISLLQQQIHNAESQLVKARAEIAVLGS 106
           +  EA+CRV DPVYG V+ ISLL Q+IH+A+SQL K +A+IA   +
Sbjct: 64  MYYEAQCRVADPVYGIVKTISLLNQEIHHAQSQLAKVQAQIAFYNA 109

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15231591|ref|NP_189296.1| LOB domain-containing protein 23 [Arabidopsis thaliana] gi|29427641|sp|P59467.1|LBD23_ARATH RecName: Full=LOB domain-containing protein 23; AltName: Full=ASYMMETRIC LEAVES 2-like protein 14; Short=AS2-like protein 14 gi|67633666|gb|AAY78757.1| putative LOB domain protein [Arabidopsis thaliana] gi|219807104|dbj|BAH10558.1| ASYMMETRIC LEAVES2-like 14 protein [Arabidopsis thaliana] gi|332643667|gb|AEE77188.1| LOB domain-containing protein 23 [Arabidopsis thaliana]

 Score =  149 bits (377), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 66/118 (55%), Positives = 87/118 (73%), Gaps = 2/118 (1%)

Query: 1   RCAACRHLRRRCPSDCIFAPYFPANDPHRFACVHKIYGSSKVGNMLQDLPVELRAEAADA 60
           RCAAC++LRRRCP DC+F+PYFP NDP +FACVH+IYG+  V  MLQ LP + RAEA ++
Sbjct: 5   RCAACKYLRRRCPKDCVFSPYFPPNDPQKFACVHRIYGAGNVSKMLQQLPDQTRAEAVES 64

Query: 61  ICIEAECRVQDPVYGCVRMISLLQQQIHNAESQLVKARAEIAVLGSHAQELRHHVQDI 118
           +C EA+CRV DPVYGCV +I LL+ QI   +++L K +AEIAV  +   +   H+ D 
Sbjct: 65  LCFEAKCRVDDPVYGCVGIIHLLKTQIQKTQNELAKTQAEIAVAQTKLSQT--HISDF 120

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15231595|ref|NP_189300.1| LOB domain-containing protein 24 [Arabidopsis thaliana] gi|29427642|sp|P59468.1|LBD24_ARATH RecName: Full=LOB domain-containing protein 24; AltName: Full=ASYMMETRIC LEAVES 2-like protein 13; Short=AS2-like protein 13 gi|219807102|dbj|BAH10557.1| ASYMMETRIC LEAVES2-like 13 protein [Arabidopsis thaliana] gi|332643671|gb|AEE77192.1| LOB domain-containing protein 24 [Arabidopsis thaliana]

 Score =  149 bits (377), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 64/113 (56%), Positives = 86/113 (76%)

Query: 1   RCAACRHLRRRCPSDCIFAPYFPANDPHRFACVHKIYGSSKVGNMLQDLPVELRAEAADA 60
           RCAAC++LRRRCP DC+F+PYFP NDP +FACVH+IYG+  V  MLQ LP + RAEA ++
Sbjct: 5   RCAACKYLRRRCPKDCVFSPYFPPNDPQKFACVHRIYGAGNVSKMLQQLPDQTRAEAVES 64

Query: 61  ICIEAECRVQDPVYGCVRMISLLQQQIHNAESQLVKARAEIAVLGSHAQELRH 113
           +C EA+CRV DPVYGCV +I LL+ QI   +++L K +AEIAV  +   + ++
Sbjct: 65  LCFEAKCRVDDPVYGCVGIIHLLKTQIQKTQNELAKTQAEIAVAQTKLSQTQN 117

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357494555|ref|XP_003617566.1| LOB domain-containing protein [Medicago truncatula] gi|355518901|gb|AET00525.1| LOB domain-containing protein [Medicago truncatula]

 Score =  145 bits (365), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 64/102 (62%), Positives = 81/102 (79%)

Query: 1   RCAACRHLRRRCPSDCIFAPYFPANDPHRFACVHKIYGSSKVGNMLQDLPVELRAEAADA 60
           RCAAC+  RRRCPSDCIF+PYFPAN+P RFA VHKIYG   VG MLQ LP  +R +AA+ 
Sbjct: 5   RCAACKSQRRRCPSDCIFSPYFPANNPQRFASVHKIYGGGNVGKMLQQLPHYVREQAANT 64

Query: 61  ICIEAECRVQDPVYGCVRMISLLQQQIHNAESQLVKARAEIA 102
           + +EA+CR+Q+PVYGCV +IS L QQIH+ E++L K + +IA
Sbjct: 65  LYLEAQCRIQNPVYGCVGIISKLYQQIHDTEAELAKIQTQIA 106

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	118
TAIR|locus:2090852	121	LBD23 "LOB domain-containing p	0.872	0.851	0.466	1.6e-22
TAIR|locus:2090812	121	LBD24 "LOB domain-containing p	0.771	0.752	0.516	3.4e-22
TAIR|locus:2060842	193	ASL5 [Arabidopsis thaliana (ta	0.864	0.528	0.485	1.9e-21
TAIR|locus:2197500	172	LBD4 "LOB domain-containing pr	0.762	0.523	0.488	5.7e-20
TAIR|locus:2032931	165	ASL9 "ASYMMETRIC LEAVES 2-like	0.728	0.521	0.476	3.6e-18
TAIR|locus:2161982	186	LOB "LATERAL ORGAN BOUNDARIES"	0.762	0.483	0.466	5.8e-18
TAIR|locus:2046817	311	LBD10 "LOB domain-containing p	0.796	0.302	0.389	1.4e-16
TAIR|locus:2061828	224	LBD15 "LOB domain-containing p	0.737	0.388	0.413	1.4e-16
TAIR|locus:2053807	245	LBD16 "lateral organ boundarie	0.847	0.408	0.421	4.7e-16
TAIR|locus:2174989	313	ASL1 "ASYMMETRIC LEAVES 2-like	0.796	0.300	0.389	1e-15

TAIR|locus:2090852 LBD23 "LOB domain-containing protein 23" [Arabidopsis thaliana (taxid:3702)]

 Score = 261 (96.9 bits), Expect = 1.6e-22, P = 1.6e-22
 Identities = 49/105 (46%), Positives = 64/105 (60%)

Query:    13 PSDCIFAPYFPANDPHRFACVHKIYGSSKVGNMLQDLPVELRXXXXXXXXXXXXXRVQDP 72
             P DC+F+PYFP NDP +FACVH+IYG+  V  MLQ LP + R             RV DP
Sbjct:    17 PKDCVFSPYFPPNDPQKFACVHRIYGAGNVSKMLQQLPDQTRAEAVESLCFEAKCRVDDP 76

Query:    73 VYGCVRMISLLQQQIHNAESQLVKARAEIAVLGSHAQELRHHVQD 117
             VYGCV +I LL+ QI   +++L K +AEIAV  +   +   H+ D
Sbjct:    77 VYGCVGIIHLLKTQIQKTQNELAKTQAEIAVAQTKLSQT--HISD 119

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2090812 LBD24 "LOB domain-containing protein 24" [Arabidopsis thaliana (taxid:3702)]

 Score = 258 (95.9 bits), Expect = 3.4e-22, P = 3.4e-22
 Identities = 47/91 (51%), Positives = 59/91 (64%)

Query:    13 PSDCIFAPYFPANDPHRFACVHKIYGSSKVGNMLQDLPVELRXXXXXXXXXXXXXRVQDP 72
             P DC+F+PYFP NDP +FACVH+IYG+  V  MLQ LP + R             RV DP
Sbjct:    17 PKDCVFSPYFPPNDPQKFACVHRIYGAGNVSKMLQQLPDQTRAEAVESLCFEAKCRVDDP 76

Query:    73 VYGCVRMISLLQQQIHNAESQLVKARAEIAV 103
             VYGCV +I LL+ QI   +++L K +AEIAV
Sbjct:    77 VYGCVGIIHLLKTQIQKTQNELAKTQAEIAV 107

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IDA

TAIR|locus:2060842 ASL5 [Arabidopsis thaliana (taxid:3702)]

 Score = 251 (93.4 bits), Expect = 1.9e-21, P = 1.9e-21
 Identities = 50/103 (48%), Positives = 63/103 (61%)

Query:    15 DCIFAPYFPANDPHRFACVHKIYGSSKVGNMLQDLPVELRXXXXXXXXXXXXXRVQDPVY 74
             DCIFAPYFP +DPH+FA VHK++G+S V  MLQ+LPV  R             RV+DPVY
Sbjct:    22 DCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRADAVNSLVFEANARVRDPVY 81

Query:    75 GCVRMISLLQQQIHNAESQLVKARAEIAVLGSHAQE-LRHHVQ 116
             GCV  IS LQ Q+   + QL  A+AEI  +    +  L+ H Q
Sbjct:    82 GCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQNEPTLQSHHQ 124

GO:0005634 "nucleus" evidence=ISM

GO:0003677 "DNA binding" evidence=TAS

GO:0009965 "leaf morphogenesis" evidence=IMP

GO:0010016 "shoot system morphogenesis" evidence=IMP

TAIR|locus:2197500 LBD4 "LOB domain-containing protein 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 237 (88.5 bits), Expect = 5.7e-20, P = 5.7e-20
 Identities = 44/90 (48%), Positives = 60/90 (66%)

Query:    15 DCIFAPYFPANDPHRFACVHKIYGSSKVGNMLQDLPVELRXXXXXXXXXXXXXRVQDPVY 74
             DC+F+PYFPA++P +FA VH+++G+S V  MLQ+LP+  R             RV+DPVY
Sbjct:    27 DCVFSPYFPADEPQKFANVHRVFGASNVNKMLQELPIHQRGDAVSSMVYEANARVRDPVY 86

Query:    75 GCVRMISLLQQQIHNAESQLVKARAEIAVL 104
             GCV  IS LQQQI   ++QL  A+AE+  L
Sbjct:    87 GCVGAISSLQQQIDVLQAQLALAQAEVVHL 116

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0009944 "polarity specification of adaxial/abaxial axis" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

TAIR|locus:2032931 ASL9 "ASYMMETRIC LEAVES 2-like 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 220 (82.5 bits), Expect = 3.6e-18, P = 3.6e-18
 Identities = 41/86 (47%), Positives = 55/86 (63%)

Query:    16 CIFAPYFPANDPHRFACVHKIYGSSKVGNMLQDLPVELRXXXXXXXXXXXXXRVQDPVYG 75
             C+FAPYFPA +P++FA VHKI+G+S V  MLQ+L    R             R+QDPVYG
Sbjct:    30 CVFAPYFPAKEPYKFAIVHKIFGASNVNKMLQELSENHRSDAVDSMVYEANARIQDPVYG 89

Query:    76 CVRMISLLQQQIHNAESQLVKARAEI 101
             CV  IS L +Q+   ++QL  A+AE+
Sbjct:    90 CVGTISSLHRQLETLQTQLAFAQAEL 115

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0010089 "xylem development" evidence=RCA

GO:0044036 "cell wall macromolecule metabolic process" evidence=RCA

TAIR|locus:2161982 LOB "LATERAL ORGAN BOUNDARIES" [Arabidopsis thaliana (taxid:3702)]

 Score = 218 (81.8 bits), Expect = 5.8e-18, P = 5.8e-18
 Identities = 42/90 (46%), Positives = 55/90 (61%)

Query:    16 CIFAPYFPANDPHRFACVHKIYGSSKVGNMLQDLPVELRXXXXXXXXXXXXXRVQDPVYG 75
             CIFAPYFP  +PH+FA VHKI+G+S V  +L +L    R             RV+DPVYG
Sbjct:    26 CIFAPYFPPEEPHKFANVHKIFGASNVTKLLNELLPHQREDAVNSLAYEAEARVRDPVYG 85

Query:    76 CVRMISLLQQQIHNAESQLVKARAEIAVLG 105
             CV  IS LQ+Q+H  + +L  A A++A  G
Sbjct:    86 CVGAISYLQRQVHRLQKELDAANADLAHYG 115

GO:0005634 "nucleus" evidence=ISM

GO:0010199 "organ boundary specification between lateral organs and the meristem" evidence=IMP

TAIR|locus:2046817 LBD10 "LOB domain-containing protein 10" [Arabidopsis thaliana (taxid:3702)]

 Score = 205 (77.2 bits), Expect = 1.4e-16, P = 1.4e-16
 Identities = 37/95 (38%), Positives = 56/95 (58%)

Query:    15 DCIFAPYFPANDPHRFACVHKIYGSSKVGNMLQDLPVELRXXXXXXXXXXXXXRVQDPVY 74
             +C+FAPYFP  +P +F  VH+++G+S V  +L DLP + R             R++DP+Y
Sbjct:    19 ECVFAPYFPPTNPQKFIFVHRVFGASNVTKILNDLPPDQREDTVNSLFYEAEARIRDPIY 78

Query:    75 GCVRMISLLQQQIHNAESQLVKARAE-IAVLGSHA 108
             GCV +IS LQQ +   +  L+ A+ E +  LG  A
Sbjct:    79 GCVGLISFLQQYLKKIQQDLLTAKEELVGYLGPDA 113

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2061828 LBD15 "LOB domain-containing protein 15" [Arabidopsis thaliana (taxid:3702)]

 Score = 205 (77.2 bits), Expect = 1.4e-16, P = 1.4e-16
 Identities = 36/87 (41%), Positives = 54/87 (62%)

Query:    15 DCIFAPYFPANDPHRFACVHKIYGSSKVGNMLQDLPVELRXXXXXXXXXXXXXRVQDPVY 74
             +C F+PYF  ++PH+FA VHK++G+S V  ML ++P   R             R++DPVY
Sbjct:    59 ECPFSPYFSPHEPHKFASVHKVFGASNVSKMLMEVPESQRADAANSLVYEANVRLRDPVY 118

Query:    75 GCVRMISLLQQQIHNAESQLVKARAEI 101
             GC+  IS LQQQ+   +++L   R+EI
Sbjct:   119 GCMGAISALQQQVQALQAELTAVRSEI 145

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008150 "biological_process" evidence=ND

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2053807 LBD16 "lateral organ boundaries-domain 16" [Arabidopsis thaliana (taxid:3702)]

 Score = 200 (75.5 bits), Expect = 4.7e-16, P = 4.7e-16
 Identities = 43/102 (42%), Positives = 61/102 (59%)

Query:    14 SDCIFAPYFPAND-PHRFACVHKIYGSSKVGNMLQDLPVELRXXXXXXXXXXXXXRVQDP 72
             SDCIFAPYF +     RFA +HK++G+S V  +L ++P+  R             R+ DP
Sbjct:    28 SDCIFAPYFSSEQGAARFAAIHKVFGASNVSKLLLNVPIHDRCEAVVTIAYEAQARLHDP 87

Query:    73 VYGCVRMISLLQQQIHNAESQLVKARAEIAV-LGSHAQELRH 113
             VYGCV  I  LQQQ+   +SQ+++ +A+IA    S A +LRH
Sbjct:    88 VYGCVSHIFALQQQVAFLQSQVMQMKAQIAGHQTSAAGDLRH 129

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0010311 "lateral root formation" evidence=IMP

TAIR|locus:2174989 ASL1 "ASYMMETRIC LEAVES 2-like 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 198 (74.8 bits), Expect = 1.0e-15, P = 1.0e-15
 Identities = 37/95 (38%), Positives = 55/95 (57%)

Query:    15 DCIFAPYFPANDPHRFACVHKIYGSSKVGNMLQDLPVELRXXXXXXXXXXXXXRVQDPVY 74
             +C+FAPYFP + P +FA VHK++G+S V  +L +L    R             R++DPVY
Sbjct:    21 ECVFAPYFPPDQPQKFAFVHKVFGASNVAKLLNELASNQREDAVNSLFYEAEARLRDPVY 80

Query:    75 GCVRMISLLQQQIHNAESQLVKARAEIAV-LGSHA 108
             GCV +IS+LQ ++      L  A+ E+A  +G  A
Sbjct:    81 GCVGLISILQHRLKQVNHDLENAKKELATYVGPQA 115

GO:0005634 "nucleus" evidence=ISM

GO:0009965 "leaf morphogenesis" evidence=IMP

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IMP

GO:0009954 "proximal/distal pattern formation" evidence=IGI

GO:0048441 "petal development" evidence=IGI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P59467	LBD23_ARATH	No assigned EC number	0.5593	0.9830	0.9586	yes	no
P59468	LBD24_ARATH	No assigned EC number	0.5663	0.9576	0.9338	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	118
pfam03195	101	pfam03195, DUF260, Protein of unknown function DUF	9e-45

>gnl|CDD|190559 pfam03195, DUF260, Protein of unknown function DUF260

 Score =  140 bits (355), Expect = 9e-45
 Identities = 51/101 (50%), Positives = 72/101 (71%)

Query: 1   RCAACRHLRRRCPSDCIFAPYFPANDPHRFACVHKIYGSSKVGNMLQDLPVELRAEAADA 60
            CAAC+HLRR+CP DC+ APYFPA  P RFA VHK++G+S V  +L+ LP E R +A  +
Sbjct: 1   PCAACKHLRRKCPPDCVLAPYFPAEQPARFANVHKLFGASNVTKLLKALPPEQRDDAMRS 60

Query: 61  ICIEAECRVQDPVYGCVRMISLLQQQIHNAESQLVKARAEI 101
           +  EA+ R +DPVYGCV +I  LQQQ+   +++L   +A++
Sbjct: 61  LLYEADARARDPVYGCVGVIWSLQQQLEQLQAELALVKAQL 101

Length = 101

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	118
PF03195	101	DUF260: Protein of unknown function DUF260; InterP	100.0
COG3416	233	Uncharacterized protein conserved in bacteria [Fun	83.5
PRK10265	101	chaperone-modulator protein CbpM; Provisional	81.72

>PF03195 DUF260: Protein of unknown function DUF260; InterPro: IPR004883 The lateral organ boundaries (LOB) gene is expressed at the adaxial base of initiating lateral organs and encodes a plant-specific protein of unknown function

Probab=100.00  E-value=2.7e-55  Score=308.90  Aligned_cols=101  Identities=53%  Similarity=1.042  Sum_probs=99.7

Q ss_pred             CchhchHhhhCCCCCCccCCCCCCCCchhHHHHHHHhccchhhhhhhCCCchhHHHHHHHHHHHHhhhccCCCcCcHHHH
Q 038129            1 RCAACRHLRRRCPSDCIFAPYFPANDPHRFACVHKIYGSSKVGNMLQDLPVELRAEAADAICIEAECRVQDPVYGCVRMI   80 (118)
Q Consensus         1 ~CaaCk~~Rr~C~~~C~laPyFp~~~~~~F~~vhkvFG~sni~k~L~~l~~~~R~~a~~SL~YEA~~R~~DPV~Gc~G~I   80 (118)
                      +|||||||||||+++|+||||||++++++|++||||||+|||+|||+++||++|+++|+||+|||++|.+||||||+|+|
T Consensus         1 ~CaaCk~lRr~C~~~C~laPyFP~~~~~~F~~vhkvFG~sni~k~L~~~~~~~R~~a~~Sl~yEA~~R~~dPv~Gc~G~i   80 (101)
T PF03195_consen    1 PCAACKHLRRRCSPDCVLAPYFPADQPQRFANVHKVFGVSNISKMLQELPPEQREDAMRSLVYEANARARDPVYGCVGII   80 (101)
T ss_pred             CChHHHHHhCCCCCCCcCCCCCChhHHHHHHHHHHHHchhHHHHHHHhCCccchhhHHHHHHHHHHhhccCCCcchHHHH
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 038129           81 SLLQQQIHNAESQLVKARAEI  101 (118)
Q Consensus        81 ~~Lq~ql~~~~~EL~~~~~~l  101 (118)
                      +.|+||++++++||+.++++|
T Consensus        81 ~~L~~ql~~~~~el~~~~~~l  101 (101)
T PF03195_consen   81 SQLQQQLQQLQAELALVRAQL  101 (101)
T ss_pred             HHHHHHHHHHHHHHHHHHccC
Confidence            999999999999999999875

The N-terminal one half of the LOB protein contains a conserved approximately 100-amino acid domain (the LOB domain) that is present in 42 other Arabidopsis thaliana proteins and in proteins from a variety of other plant species. Genes encoding LOB domain (LBD) proteins are expressed in a variety of temporal- and tissue-specific patterns, suggesting that they may function in diverse processes [] The LOB domain contains conserved blocks of amino acids that identify the LBD gene family. In particular, a conserved C-x(2)-C-x(6)-C-x(3)-C motif, which is defining feature of the LOB domain, is present in all LBD proteins. It is possible that this motif forms a new zinc finger [].

>COG3416 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=83.50  E-value=3.8  Score=32.91  Aligned_cols=65  Identities=22%  Similarity=0.289  Sum_probs=57.0

Q ss_pred             hhhhhhCCCchhHHHHHHHHHHHHhhhccCCCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 038129           42 VGNMLQDLPVELRAEAADAICIEAECRVQDPVYGCVRMISLLQQQIHNAESQLVKARAEIAVLGS  106 (118)
Q Consensus        42 i~k~L~~l~~~~R~~a~~SL~YEA~~R~~DPV~Gc~G~I~~Lq~ql~~~~~EL~~~~~~la~~~~  106 (118)
                      +..-|+......|+..+..||-||-++.-|--|=-+-.|..+++-|..+..+|+.++.+++..+.
T Consensus        12 lf~rlk~a~~~~rD~~Ae~lI~~~~~~qP~a~Y~laQ~vliqE~ALk~a~~~i~eLe~ri~~lq~   76 (233)
T COG3416          12 LFHRLKKAEANERDPQAEALIAEAVAKQPDAAYYLAQRVLIQEQALKKASTQIKELEKRIAILQA   76 (233)
T ss_pred             HHHHHhhcccCCCChHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            33445666777899999999999999999999999999999999999999999999999987765

>PRK10265 chaperone-modulator protein CbpM; Provisional

Probab=81.72  E-value=3.6  Score=28.44  Aligned_cols=34  Identities=12%  Similarity=0.159  Sum_probs=30.1

Q ss_pred             cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhch
Q 038129           74 YGCVRMISLLQQQIHNAESQLVKARAEIAVLGSH  107 (118)
Q Consensus        74 ~Gc~G~I~~Lq~ql~~~~~EL~~~~~~la~~~~~  107 (118)
                      .-.+++|..|-.++.+++.|+..++++|..|..+
T Consensus        67 ~~gialvl~LLd~i~~Lr~el~~L~~~l~~~~~~  100 (101)
T PRK10265         67 WPGIAVALTLLDEIAHLKQENRLLRQRLSRFVAH  100 (101)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            3468899999999999999999999999988754

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	118
4dzn_A	33	Coiled-coil peptide CC-PIL; de novo protein; HET:	88.56
4e61_A	106	Protein BIM1; EB1-like motif, coiled-coil, spindle	80.1

>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B

Probab=88.56  E-value=0.7  Score=25.39  Aligned_cols=28  Identities=29%  Similarity=0.361  Sum_probs=24.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 038129           78 RMISLLQQQIHNAESQLVKARAEIAVLG  105 (118)
Q Consensus        78 G~I~~Lq~ql~~~~~EL~~~~~~la~~~  105 (118)
                      |.|..|.++|..++.|++.++-+++..+
T Consensus         2 geiaalkqeiaalkkeiaalkfeiaalk   29 (33)
T 4dzn_A            2 GEIAALKQEIAALKKEIAALKFEIAALK   29 (33)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6788999999999999999999988765

>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}

Probab=80.10  E-value=3.3  Score=28.62  Aligned_cols=37  Identities=14%  Similarity=0.225  Sum_probs=31.8

Q ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhh
Q 038129           75 GCVRMISLLQQQIHNAESQLVKARAEIAVLGSHAQEL  111 (118)
Q Consensus        75 Gc~G~I~~Lq~ql~~~~~EL~~~~~~la~~~~~~~~~  111 (118)
                      |..|.+..++.++.+.+.++..+++++..++..-..+
T Consensus         1 ~~~~s~~al~~eL~~~~~ei~~L~~ei~eLk~~ve~l   37 (106)
T 4e61_A            1 GPLGSLVAIQAELTKSQETIGSLNEEIEQYKGTVSTL   37 (106)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7789999999999999999999999998887765544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	118
d1hcia4	114	alpha-actinin {Human (Homo sapiens) [TaxId: 9606]}	87.98

>d1hcia4 a.7.1.1 (A:633-746) alpha-actinin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: Spectrin repeat
family: Spectrin repeat
domain: alpha-actinin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.98  E-value=0.58  Score=29.18  Aligned_cols=60  Identities=12%  Similarity=0.094  Sum_probs=52.9

Q ss_pred             HHHHHHHHHHHhhhccCCCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhc
Q 038129           55 AEAADAICIEAECRVQDPVYGCVRMISLLQQQIHNAESQLVKARAEIAVLGSHAQELRHH  114 (118)
Q Consensus        55 ~~a~~SL~YEA~~R~~DPV~Gc~G~I~~Lq~ql~~~~~EL~~~~~~la~~~~~~~~~~~~  114 (118)
                      .+-+.+=+-|+..-+.+|++|-.+.+..+..+...++.||..-+..+.......+.|..+
T Consensus        14 a~~~~~Wi~e~~~~l~~~~~~~~~~ve~~l~~h~~~e~el~~~~~~i~~l~~~g~~L~~~   73 (114)
T d1hcia4          14 ANAIGPWIQNKMEEIARSSIQITGALEDQMNQLKQYEHNIINYKNNIDKLEGDHQLIQEA   73 (114)
T ss_dssp             HHHHHHHHHHHHHHHHSCSCTTTTSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            455667778888888999999999999999999999999999999999999888887754