Citrus Sinensis ID: 038150

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------49
Protein Sequence
VKLVVGVEKEVKSLTSHLQAIQAVLDDAEEKQVKDKAVRHWLGRLKYASYDIEDVLDEWITGRRKLQIEGGIGENALIAPHKKKKVRFCFRASCLGFKTEEFGFKQVFLRHDIANKIKEMNEELHDIATQKDIQNECFSMAINGSEEPNATNALDEKVRHLMLIFSKAASLPISTLRVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVLPETLCELYNLEKLDISDCFNLKELPEGIGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGRKACRLESLKNLEHLQVCGISRLGDVSDVGEAKRLELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKELEIEYYRGNTVFPSWMTSLTNLKSLDLSSCENCEQLPPLGKLQSLENLHIWRMESVKRVGDEFLGIESDHHGSSSSSSVIIAFPKLKSLSIEVLRELE
Secondary Structure (PSIPRED)
ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHccccHHHHHHHHHHHcccHHHccccccccccccccccccEEEEcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccccEEEEEEcccccccccccccccEEEEEEEEcccccccccccccccEEEEEcccccccHHHHHHHHHcccccEEEEEcccccccccccccccccccccccccHHHHccccccEEccccccccccccHHccccccccEEEcccccccccccccccccccccccccEEEccccccccccccccccccccccccEEEEEcccccccccHHHHccccccccccEEEEEEcccccccHHHcccccHHHHHHcccccccccEEEEEEEEccccccccccccccccEEEEEccccccccccccccccccEEEEccccccEEEccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHcccHHHHHHcHHHccccccccccHHHHHHHHHHHHHHHHHcccccccccEEHHHHHHHHHHHHccccEEEEEEccccccccccccccccEEEEEEEcccccccccHHccccccEEEEEcccccccccccHHHHHcccccEEEEEcccccccccccccccHHccHccccHHHcccccccEEEEcccccHHcccHHHcccccccEEEEccccccccccccccccccccEEEEEEccccccccccccccHHHHcccHHHcEcccccccccccHHHHHHccccccccccEcccccccccccccccccccccHHHHHcccccccccEEEEEcccccccccHHHcccccccEEEEcccccccccccccccccccEEEEcccccHcEccHHHcccccccHccccccccccccccccEEEEccccccc
Coil and Loop (DISEMBL)
VKLVVGVEKEVKSLTSHLQAIQAVLDDAEEKQVKDKAVRHWLGRLKYASYDIEDVLDEWITGRRKLqieggigenaliaphkkkkvRFCFrasclgfkteefgfKQVFLRHDIANKIKEMNEELHDIATQKDIQNECFSmaingseepnatnaLDEKVRHLMLIFSKAASLPISTLRVKRMRTLLINDHSLLNAAILEELFRELTSLRaldfggsyhstrlltpevprnieklvlPETLCELynlekldisdcfnlkelpegIGKLINVKHLLNrgtnslrympvgigrltglrtlgefhvsagggvdgrkaCRLESLKNLEHLQVCgisrlgdvsdvgeaKRLELDKKKYLSSLTLWfdkeeeeegerrkneDNQLLLEAlrpplnlkeLEIEYyrgntvfpswmtsltnlksldlsscenceqlpplgklqslenlHIWRMESVkrvgdeflgiesdhhgssssssviiafpklkSLSIEVLRELE
Flexible Loop (DISEMBL)
VKLVVGVEKEVKSLTSHLQAIQAvlddaeekqvkdKAVRhwlgrlkyasydiEDVLDEWITGRRKLQIeggigenaliaphkkkkVRFCFRASCLGfkteefgfkqVFLRHDIANKIKEMNEELHDIATQKDIQNECFSMAINGSEEPNATNALDEKVRHLMLIFSkaaslpistLRVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGgsyhstrlltpevprnIEKLVLPETLCELYNLEKLDISDCFNLKELPEGIGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGRKACRLESLKNlehlqvcgisrlgdvsdvgeakrleldkkkylssltlwfdkeeeeegerrknednqlllealrpplnlKELEIEYYRGNTVFPSWMTSLTNLKSLDLSSCENCEQLPPLGKLQSLENLHIWRMESVKRVGDEFLGIESdhhgssssssviiafpklkslsievlrele
Low Complexity Region (SEG)
vklvvgvekevkSLTSHLQAIQAVLDDAEEKQVKDKAVRHWLGRLKYASYDIEDVLDEWITGRRKLQIEGGIGENALIAPHKKKKVRFCFRASCLGFKTEEFGFKQVFLRHDIANKIKEMNEELHDIATQKDIQNECFSMAINGSEEPNATNALDEKVRHLMLIFSKAASLPISTLRVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVLPETLCELYNLEKLDISDCFNLKELPEGIGKLINVKHLLNRGTNSLRYMPVGIgrltglrtlgEFHVSAGGGVDGRKACRLESLKNLEHLQVCGISRLGDVSDVGEAKRLELDKKKYLSSLTLWFdkeeeeegerrknednQlllealrpplnlKELEIEYYRGNTVFPSWMTSLTNLKSLDLSSCENCEQLPPLGKLQSLENLHIWRMESVKRVGDEFLGIESDHHGssssssVIIAFPKLKSLSIEVLRELE
Disordered region (IsUnstruct)
*************LTSHLQAIQAVLDDAEEKQVKDKAVRHWLGRLKYASYDIEDVLDEWITGRRKLQIEGGIGENALIAPHKKKKVRFCFRASCLGFKTEEFGFKQVFLRHDIANKIKEMNEELHDIATQKDIQNECFSMAI***********LDEKVRHLMLIFSKAASLPISTLRVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVLPETLCELYNLEKLDISDCFNLKELPEGIGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGRKACRLESLKNLEHLQVCGISRLGDVSDVGEAKRLELDKKKYLSSLTLWF******************LLEALRPPLNLKELEIEYYRGNTVFPSWMTSLTNLKSLDLSSCENCEQLPPLGKLQSLENLHIWRMESVKRVGDEFLGI************VIIAFPKLKSL*********
Disordered Region (DISOPRED)
VKLVVGVEKEVKSLTSHLQAIQAVLDDAEEKQVKDKAVRHWLGRLKYASYDIEDVLDEWITGRRKLQIEGGIGENALIAPHKKKKVRFCFRASCLGFKTEEFGFKQVFLRHDIANKIKEMNEELHDIATQKDIQNECFSMAINGSEEPNATNALDEKVRHLMLIFSKAASLPISTLRVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVLPETLCELYNLEKLDISDCFNLKELPEGIGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGRKACRLESLKNLEHLQVCGISRLGDVSDVGEAKRLELDKKKYLSSLTLWFDKEEE*********DNQLLLEALRPPLNLKELEIEYYRGNTVFPSWMTSLTNLKSLDLSSCENCEQLPPLGKLQSLENLHIWRMESVKRVGDEFLGIESDHH*****SSVIIAFPKLKSLSIEVLRELE
Disordered Region (DISEMBL)
VKLVVGVEKEVKSLTSHLQAIQAVLDDAEEKQVKDKAVRHWLGRLKYASYDIEDVLDEWITGRRKLQIEGGIGENALIAPHKKKKVRFCFRASCLGFKTEEFGFKQVFLRHDIANKIKEMNEELHDIATQKDIQNECFSMAINGSEEPNATNALDEKVRHLMLIFSKAASLPISTLRVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVLPETLCELYNLEKLDISDCFNLKELPEGIGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGRKACRLESLKNLEHLQVCGISRLGDVSDVGEAKRLELDKKKYLSSLTLWFD************EDNQLLLEALRPPLNLKELEIEYYRGNTVFPSWMTSLTNLKSLDLSSCENCEQLPPLGKLQSLENLHIWRMESVKRVGDEFLGIES*********SVIIAFPKLKSLSIEVLRELE
Disordered Region (DISPRO)
VKLVVGVEKEVKSLTSHLQAIQAVLDDAEEKQVKDKAVRHWLGRLKYASYDIEDVLDEWITGRRKLQIEGGIGENALIAPHKKKKVRFCFRASCLGFKTEEFGFKQVFLRHDIANKIKEMNEELHDIATQKDIQNECFSMAINGSEEPNATNALDEKVRHLMLIFSKAASLPISTLRVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVLPETLCELYNLEKLDISDCFNLKELPEGIGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGRKACRLESLKNLEHLQVCGISRLGDVSDVGEAKRLELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKELEIEYYRGNTVFPSWMTSLTNLKSLDLSSCENCEQLPPLGKLQSLENLHIWRMESVKRVGDEFLGIESDHHGSSSSSSVIIAFPKLKSLSIEVLREL*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
VKLVVGVEKExxxxxxxxxxxxxxxxxxxxxQVKDKAVRHWLGRLKYASYDIEDVLDEWITGRRKLQIEGGIGENALIAPHKKKKVRFCFRASCLGFKTEEFGFKQVFLRHDIANKIKEMNEELHDIATQKDIQNECFSMAINGSEEPNATNALDEKVRHLMLIFSKAASLPISTLRVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVLPETLCELYNLEKLDISDCFNLKELPEGIGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGRKACRLESLKNLEHLQVCGISRLGDVSDVGEAKRLELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKELEIEYYRGNTVFPSWMTSLTNLKSLDLSSCENCEQLPPLGKLQSLENLHIWRMESVKRVGDEFLGIESDHHGSSSSSSVIIAFPKLKSLSIEVLRELE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	488	2.2.26 [Sep-21-2011]
Q9LRR4	1054	Putative disease resistan	yes	no	0.590	0.273	0.336	1e-28
Q7XA39	988	Putative disease resistan	N/A	no	0.766	0.378	0.303	1e-24
Q7XA40	992	Putative disease resistan	N/A	no	0.452	0.222	0.354	7e-24
Q7XBQ9	970	Disease resistance protei	N/A	no	0.557	0.280	0.325	7e-23
Q9LRR5	1424	Putative disease resistan	no	no	0.469	0.160	0.352	1e-22
Q7XA42	979	Putative disease resistan	N/A	no	0.393	0.196	0.333	3e-16
Q38834	852	Disease resistance RPP13-	no	no	0.483	0.276	0.285	2e-07
Q9C8T9	898	Putative disease resistan	no	no	0.465	0.252	0.272	6e-07
A4IIK1	997	Malignant fibrous histioc	yes	no	0.256	0.125	0.321	8e-06
Q5B778	675	Glucose-repressible alcoh	yes	no	0.176	0.127	0.4	7e-05

>sp|Q9LRR4|R13L1_ARATH Putative disease resistance RPP13-like protein 1 OS=Arabidopsis thaliana GN=RPPL1 PE=3 SV=1

 Score =  128 bits (322), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 110/327 (33%), Positives = 165/327 (50%), Gaps = 39/327 (11%)

Query: 154 LDEKVRHLMLIFSKAA-SLPISTLR-VKRMRTLL---INDHS---LLNAAILEELFRELT 205
           + E+ R+L  +    A  +    LR VK +RT L   + + S    L+  + E+L   LT
Sbjct: 519 VSERTRYLSYLRDNYAEPMEFEALREVKFLRTFLPLSLTNSSRSCCLDQMVSEKLLPTLT 578

Query: 206 SLRALDFGGSYHSTRLLTPEVPRNI-----------EKLVLPETLCELYNLEKLDISDCF 254
            LR L    S++    L P+  +NI           E   LP++LC +YNL+ L +S C 
Sbjct: 579 RLRVLSL--SHYKIARLPPDFFKNISHARFLDLSRTELEKLPKSLCYMYNLQTLLLSYCS 636

Query: 255 NLKELPEGIGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGRKACR 314
           +LKELP  I  LIN+++L   GT  LR MP   GRL  L+TL  F VSA    DG +   
Sbjct: 637 SLKELPTDISNLINLRYLDLIGTK-LRQMPRRFGRLKSLQTLTTFFVSAS---DGSRISE 692

Query: 315 LESLKNLE-HLQVCGISRLGDVSDVGEAKRLELDKKKYLSSLTLWF-----DKEEEEEGE 368
           L  L +L   L++  + R+ DV+D  EA    L+ KK+L  +   +       E      
Sbjct: 693 LGGLHDLHGKLKIVELQRVVDVADAAEAN---LNSKKHLREIDFVWRTGSSSSENNTNPH 749

Query: 369 RRKNEDNQLLLEALRPPLNLKELEIEYYRGNTVFPSWMT--SLTNLKSLDLSSCENCEQL 426
           R +NE    + E LRP  ++++L IE Y+G   FP W++  S + +  + L  C+ C  L
Sbjct: 750 RTQNEAE--VFEKLRPHRHIEKLAIERYKGRR-FPDWLSDPSFSRIVCIRLRECQYCTSL 806

Query: 427 PPLGKLQSLENLHIWRMESVKRVGDEF 453
           P LG+L  L+ LHI  M  ++ +G +F
Sbjct: 807 PSLGQLPCLKELHISGMVGLQSIGRKF 833

Potential disease resistance protein.
Arabidopsis thaliana (taxid: 3702)

>sp|Q7XA39|RGA4_SOLBU Putative disease resistance protein RGA4 OS=Solanum bulbocastanum GN=RGA4 PE=2 SV=1

 Score =  114 bits (286), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 132/435 (30%), Positives = 202/435 (46%), Gaps = 61/435 (14%)

Query: 81  HKKKKVRFCFRASCLGFKTEEFGFKQVFLRHDIANK--IKEMNEELHDIATQKDIQNECF 138
           H    +R CF A C  F  +    K+  +   +A+   + + N EL D+  +  + NE +
Sbjct: 399 HLPLDLRQCF-AYCAVFPKDTKMIKENLITLWMAHGFLLSKGNLELEDVGNE--VWNELY 455

Query: 139 SMAINGSEEPNATNALDEKVRHLMLIFSKAASLPISTLRVKRMRTLLINDH----SLLNA 194
             +     E  + N    K+  L  I   A SL  ++     +R + + D+    S+  A
Sbjct: 456 LRSFFQEIEAKSGNTYF-KIHDL--IHDLATSLFSASASCGNIREINVKDYKHTVSIGFA 512

Query: 195 AILEE----LFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLV--------------LP 236
           A++      L ++  SLR L+   SY        ++P +I  L+              LP
Sbjct: 513 AVVSSYSPSLLKKFVSLRVLNL--SYSKLE----QLPSSIGDLLHLRYLDLSCNNFRSLP 566

Query: 237 ETLCELYNLEKLDISDCFNLKELPEGIGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTL 296
           E LC+L NL+ LD+ +C++L  LP+   KL +++HL+  G   L   P  IG LT L+TL
Sbjct: 567 ERLCKLQNLQTLDVHNCYSLNCLPKQTSKLSSLRHLVVDGC-PLTSTPPRIGLLTCLKTL 625

Query: 297 GEFHVSAGGGVDGRKACRLESLKNLEHLQVCGISRLGDVSDVGEAKRLELDKKKYLSSLT 356
           G F V +      +K  +L  LKNL       I+ L  V +  +A+   L  K  L SL+
Sbjct: 626 GFFIVGS------KKGYQLGELKNLNLCGSISITHLERVKNDTDAEA-NLSAKANLQSLS 678

Query: 357 LWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKELEIEYYRGNTVFPSWM--TSLTNLKS 414
           + +D     +G  R       +LEAL+P  NLK LEI  + G   FPSW+  + L  + S
Sbjct: 679 MSWDN----DGPNRYESKEVKVLEALKPHPNLKYLEIIAF-GGFRFPSWINHSVLEKVIS 733

Query: 415 LDLSSCENCEQLPPLGKLQSLENLHIWRMES-VKRVGDEFLGIESDHHGSSSSSSVIIAF 473
           + + SC+NC  LPP G+L  LENL +    + V+ V       E D H   S+     +F
Sbjct: 734 VRIKSCKNCLCLPPFGELPCLENLELQNGSAEVEYVE------EDDVHSRFSTRR---SF 784

Query: 474 PKLKSLSIEVLRELE 488
           P LK L I   R L+
Sbjct: 785 PSLKKLRIWFFRSLK 799

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth.

Solanum bulbocastanum (taxid: 147425)

>sp|Q7XA40|RGA3_SOLBU Putative disease resistance protein RGA3 OS=Solanum bulbocastanum GN=RGA3 PE=2 SV=2

 Score =  112 bits (280), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 91/257 (35%), Positives = 128/257 (49%), Gaps = 36/257 (14%)

Query: 200 LFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLV--------------LPETLCELYNL 245
           LF+   SLR L+   S         ++P ++  LV              LP+ LC+L NL
Sbjct: 530 LFKRFVSLRVLNLSNSEFE------QLPSSVGDLVHLRYLDLSGNKICSLPKRLCKLQNL 583

Query: 246 EKLDISDCFNLKELPEGIGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFHVSAGG 305
           + LD+ +C +L  LP+   KL ++++L+      L  MP  IG LT L+TLG F V    
Sbjct: 584 QTLDLYNCQSLSCLPKQTSKLCSLRNLV-LDHCPLTSMPPRIGLLTCLKTLGYFVVGE-- 640

Query: 306 GVDGRKACRLESLKNLEHLQVCGISRLGDVSDVGEAKRLELDKKKYLSSLTLWFDKEEEE 365
               RK  +L  L+NL       I+ L  V +  EAK   L  K  L SL++ +D+    
Sbjct: 641 ----RKGYQLGELRNLNLRGAISITHLERVKNDMEAKEANLSAKANLHSLSMSWDRPNRY 696

Query: 366 EGERRKNEDNQLLLEALRPPLNLKELEIEYYRGNTVFPSWM--TSLTNLKSLDLSSCENC 423
           E E  K      +LEAL+P  NLK LEI  + G    P WM  + L N+ S+ +S CENC
Sbjct: 697 ESEEVK------VLEALKPHPNLKYLEIIDFCG-FCLPDWMNHSVLKNVVSILISGCENC 749

Query: 424 EQLPPLGKLQSLENLHI 440
             LPP G+L  LE+L +
Sbjct: 750 SCLPPFGELPCLESLEL 766

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth.

Solanum bulbocastanum (taxid: 147425)

>sp|Q7XBQ9|RGA2_SOLBU Disease resistance protein RGA2 OS=Solanum bulbocastanum GN=RGA2 PE=1 SV=1

 Score =  108 bits (271), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 105/323 (32%), Positives = 152/323 (47%), Gaps = 51/323 (15%)

Query: 186 INDHS---LLNAAILEELF-------RELTSLRALDFGGSYHSTRLLTPEVPRNIEKLV- 234
           IN HS   +++    E +F        +  SLR L+ G S  +      ++P +I  LV 
Sbjct: 497 INKHSYTHMMSIGFAEVVFFYTLPPLEKFISLRVLNLGDSTFN------KLPSSIGDLVH 550

Query: 235 -------------LPETLCELYNLEKLDISDCFNLKELPEGIGKLINVKHLLNRGTNSLR 281
                        LP+ LC+L NL+ LD+  C  L  LP+   KL ++++LL  G+ SL 
Sbjct: 551 LRYLNLYGSGMRSLPKQLCKLQNLQTLDLQYCTKLCCLPKETSKLGSLRNLLLDGSQSLT 610

Query: 282 YMPVGIGRLTGLRTLGEFHVSAGGGVDGRKACRLESLKNLEHLQVCGISRLGDVSDVGEA 341
            MP  IG LT L+TLG+F V        +K  +L  L NL       IS L  V +  +A
Sbjct: 611 CMPPRIGSLTCLKTLGQFVVGR------KKGYQLGELGNLNLYGSIKISHLERVKNDKDA 664

Query: 342 KRLELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKELEIEYYRGNTV 401
           K   L  K  L SL++ ++      G      +   +LEAL+P  NL  L+I  +RG   
Sbjct: 665 KEANLSAKGNLHSLSMSWNN----FGPHIYESEEVKVLEALKPHSNLTSLKIYGFRG-IH 719

Query: 402 FPSWM--TSLTNLKSLDLSSCENCEQLPPLGKLQSLENLHI-WRMESVKRVGDEFLGIES 458
            P WM  + L N+ S+ +S+  NC  LPP G L  LE+L + W    V+ V +    ++ 
Sbjct: 720 LPEWMNHSVLKNIVSILISNFRNCSCLPPFGDLPCLESLELHWGSADVEYVEE----VDI 775

Query: 459 DHHGSSSSSSVIIAFPKLKSLSI 481
           D H   S     I FP L+ L I
Sbjct: 776 DVH---SGFPTRIRFPSLRKLDI 795

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth. Confers a broad resistance to all known races of P.infestans.

Solanum bulbocastanum (taxid: 147425)

>sp|Q9LRR5|DRL21_ARATH Putative disease resistance protein At3g14460 OS=Arabidopsis thaliana GN=At3g14460 PE=3 SV=1

 Score =  108 bits (269), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 87/247 (35%), Positives = 126/247 (51%), Gaps = 18/247 (7%)

Query: 235 LPETLCELYNLEKLDISDCFNLKELPEGIGKLINVKHLLNRGTNSLRYMPVGIGRLTGLR 294
           LPE +C L NL+ L +S+C +L  LP+ I +LIN++ L   GT  L  MP GI +L  L+
Sbjct: 611 LPEFVCTLCNLQTLLLSNCRDLTSLPKSIAELINLRLLDLVGT-PLVEMPPGIKKLRSLQ 669

Query: 295 TLGEFHVS--AGGGVDGRKACRLESLKNLEHLQ-VCGISRLGDVSDVGEAKRLELDKKKY 351
            L  F +   +G G        L  LK L HL+    IS L +V+   EAK   L +K +
Sbjct: 670 KLSNFVIGRLSGAG--------LHELKELSHLRGTLRISELQNVAFASEAKDAGLKRKPF 721

Query: 352 LSSLTLWFDKEEEEEGERRKNE---DNQLLLEALRPPLNLKELEIEYYRGNTVFPSWM-- 406
           L  L L +  +         N    D + +L  L P  +LK   IE Y+G   FP W+  
Sbjct: 722 LDGLILKWTVKGSGFVPGSFNALACDQKEVLRMLEPHPHLKTFCIESYQGG-AFPKWLGD 780

Query: 407 TSLTNLKSLDLSSCENCEQLPPLGKLQSLENLHIWRMESVKRVGDEFLGIESDHHGSSSS 466
           +S   + S+ LSSC  C  LPP+G+L SL+ L I +   +++VG +F   E++  G    
Sbjct: 781 SSFFGITSVTLSSCNLCISLPPVGQLPSLKYLSIEKFNILQKVGLDFFFGENNSRGVPFQ 840

Query: 467 SSVIIAF 473
           S  I+ F
Sbjct: 841 SLQILKF 847

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q7XA42|RGA1_SOLBU Putative disease resistance protein RGA1 OS=Solanum bulbocastanum GN=RGA1 PE=2 SV=2

 Score = 87.0 bits (214), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 77/231 (33%), Positives = 112/231 (48%), Gaps = 39/231 (16%)

Query: 235 LPETLCELYNLEKLDISDCFNLKELPEGIGKLINVKHL----------LNRGTN------ 278
           LP ++ +L +L  LD+S  F ++ LP+ + KL N++ L          L + T+      
Sbjct: 540 LPSSIGDLVHLRYLDLSGNFRIRNLPKRLCKLQNLQTLDLHYCDSLSCLPKQTSKLGSLR 599

Query: 279 -------SLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGRKACRLESLKNLEHLQVCGISR 331
                  SL   P  IG LT L++L  F +        RK  +L  LKNL       I++
Sbjct: 600 NLLLDGCSLTSTPPRIGLLTCLKSLSCFVIGK------RKGHQLGELKNLNLYGSISITK 653

Query: 332 LGDVSDVGEAKRLELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKEL 391
           L  V    +AK   L  K  L SL L +D     +G+ R + +   +LEAL+P  NLK L
Sbjct: 654 LDRVKKDTDAKEANLSAKANLHSLCLSWDL----DGKHRYDSE---VLEALKPHSNLKYL 706

Query: 392 EIEYYRGNTVFPSWM--TSLTNLKSLDLSSCENCEQLPPLGKLQSLENLHI 440
           EI  + G    P WM  + L N+ S+ +  CENC  LPP G+L  LE+L +
Sbjct: 707 EINGF-GGIRLPDWMNQSVLKNVVSIRIRGCENCSCLPPFGELPCLESLEL 756

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth.

Solanum bulbocastanum (taxid: 147425)

>sp|Q38834|R13L4_ARATH Disease resistance RPP13-like protein 4 OS=Arabidopsis thaliana GN=RPP13L4 PE=2 SV=2

 Score = 57.8 bits (138), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 77/270 (28%), Positives = 121/270 (44%), Gaps = 34/270 (12%)

Query: 179 KRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVLPET 238
           K +R L I+  S+ +A  L E+  E+ SL+ L      ++  L+  + PR++E       
Sbjct: 559 KYLRVLDIS-KSIFDAP-LSEILDEIASLQHLACLSLSNTHPLI--QFPRSME------- 607

Query: 239 LCELYNLEKLDISDCFNLKELPEGIGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGE 298
             +L+NL+ LD S C NLK+L   I     +  L      SL   P GIG L  L  L  
Sbjct: 608 --DLHNLQILDASYCQNLKQLQPCIVLFKKLLVLDMTNCGSLECFPKGIGSLVKLEVLLG 665

Query: 299 FHVSAGGGVDGRKACRLESLKNLEHLQVCGISRLGDVSDVGEAKRLELDKKKYLSSLTLW 358
           F  +          C+L  +KNL +L+  G+S    ++   + +  ELD    LS L   
Sbjct: 666 FKPARSNN-----GCKLSEVKNLTNLRKLGLS----LTRGDQIEEEELDSLINLSKLMSI 716

Query: 359 FDKEEEEEGERRKNEDNQLLLEALRPPLNLKELEIEYYRGNTVFPSWMTS--LTNLKSLD 416
                +  G     +D    ++AL PP  L EL +++Y G +  PSW++   L  L+ + 
Sbjct: 717 SINCYDSYG-----DDLITKIDALTPPHQLHELSLQFYPGKSS-PSWLSPHKLPMLRYMS 770

Query: 417 LSSCENCEQLPPLGKLQSLENLHIWRMESV 446
           + S    +   P       EN H WR+E +
Sbjct: 771 ICSGNLVKMQEP---FWGNENTH-WRIEGL 796

Disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C8T9|DRL19_ARATH Putative disease resistance protein At1g63350 OS=Arabidopsis thaliana GN=At1g63350 PE=2 SV=1

 Score = 56.2 bits (134), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 71/261 (27%), Positives = 116/261 (44%), Gaps = 34/261 (13%)

Query: 245 LEKLDISDCFNLKELPEGIGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFHVSAG 304
           L  LD+S  + L ELP GI +L+++++ LN  +  +R++P G+  L  L  L     S  
Sbjct: 563 LAVLDLSGNYYLSELPNGISELVSLQY-LNLSSTGIRHLPKGLQELKKLIHLYLERTSQL 621

Query: 305 GGVDGRKACRLESLKNLEHLQVCGISRLGDVSDVGEAKRLE-------------LDKKKY 351
           G + G     +  L NL+ L++ G S   D+  V E + LE             L   ++
Sbjct: 622 GSMVG-----ISCLHNLKVLKLSGSSYAWDLDTVKELEALEHLEVLTTTIDDCTLGTDQF 676

Query: 352 LSSLTLW----FDKEEEEEGERRKNEDNQLLLEALRPPLNLKELEIEYYRGNTVFPSWMT 407
           LSS  L     F K        R +    L +   R    L+E  IE+   + +    + 
Sbjct: 677 LSSHRLMSCIRFLKISNNSNRNRNSSRISLPVTMDR----LQEFTIEHCHTSEIKMGRIC 732

Query: 408 SLTNLKSLDLSSCENCEQLPPLGKLQSLENLHIWRMESVKRVGDEFLGIESDHHGSSSSS 467
           S ++L  ++LS+C    +L  L    +L+ LH+     +    ++ +  E  H G  S  
Sbjct: 733 SFSSLIEVNLSNCRRLRELTFLMFAPNLKRLHVVSSNQL----EDIINKEKAHDGEKSG- 787

Query: 468 SVIIAFPKLKSLSIEVLRELE 488
             I+ FPKL  L +  LREL+
Sbjct: 788 --IVPFPKLNELHLYNLRELK 806

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|A4IIK1|MFHA1_XENTR Malignant fibrous histiocytoma-amplified sequence 1 homolog OS=Xenopus tropicalis GN=mfhas1 PE=2 SV=1

 Score = 52.4 bits (124), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 46/143 (32%), Positives = 75/143 (52%), Gaps = 18/143 (12%)

Query: 165 FSKAASLPISTLRVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTP 224
           F++   LP +   +  +RTL ++ + L   +  ++LF  + +L  LDF G+     L  P
Sbjct: 156 FNQITHLPDTMQGLPSLRTLDLDHNEL--CSFPQQLFH-VPALEELDFSGNKMLGSL--P 210

Query: 225 EVPRNIEKL-----------VLPETLCELYNLEKLDISDCFNLKELPEGIGKLINVKHLL 273
           E  R+++ L           +LP+++CEL NLE L + D  NL  LPEG G L  +K +L
Sbjct: 211 EGIRSMQSLKILWLSSTSLCLLPDSICELVNLESLML-DNNNLHTLPEGFGALQKLK-ML 268

Query: 274 NRGTNSLRYMPVGIGRLTGLRTL 296
           N  +N+ +  PV + +L  L  L
Sbjct: 269 NVSSNAFQDFPVPLLQLVDLEEL 291

Xenopus tropicalis (taxid: 8364)

>sp|Q5B778|CCR4_EMENI Glucose-repressible alcohol dehydrogenase transcriptional effector OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=ccr4 PE=3 SV=1

 Score = 49.3 bits (116), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 40/100 (40%), Positives = 53/100 (53%), Gaps = 14/100 (14%)

Query: 208 RALDFGGSYHSTRLLTPEVPRN--IEKL--------VLPETLCELYNLEKLDISDCFNLK 257
            ALDFGG     R L P + +   +EKL        VLP  + +L  L  LD+S   +L 
Sbjct: 159 HALDFGGQ--GLRALAPSLFKYAFLEKLYLSHNKLKVLPPQIGQLRKLTHLDLS-ANDLT 215

Query: 258 ELPEGIGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTLG 297
           ELPE IG L N++HLL    N++R +P  +G L  L  LG
Sbjct: 216 ELPEEIGMLTNLRHLL-LFDNNIRTLPYEMGYLYRLEILG 254

Acts as catalytic component of the CCR4-NOT core complex, which in the nucleus seems to be a general transcription factor, and in the cytoplasm the major mRNA deadenylase involved in mRNA turnover. Ccr4 has 3'-5' RNase activity with a strong preference for polyadenylated substrates and also low exonuclease activity towards single stranded DNA. Discovered because of its role in the control of ADH2 gene expression. It is required for the expression of genes involved in non-fermentative growth.

Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) (taxid: 227321)

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: 3

EC: .

EC: 4

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	488
255558785	661	leucine-rich repeat containing protein,	0.709	0.523	0.435	2e-63
255549784	786	leucine-rich repeat containing protein,	0.709	0.440	0.430	3e-62
359482788	903	PREDICTED: putative disease resistance p	0.715	0.386	0.394	4e-55
255558779	387	hypothetical protein RCOM_1397400 [Ricin	0.620	0.782	0.434	2e-54
147825450	927	hypothetical protein VITISV_000086 [Viti	0.721	0.379	0.380	2e-53
224115608	922	cc-nbs-lrr resistance protein [Populus t	0.696	0.368	0.400	1e-52
224122712	945	cc-nbs-lrr resistance protein [Populus t	0.735	0.379	0.381	2e-52
224115620	963	cc-nbs-lrr resistance protein [Populus t	0.698	0.354	0.401	5e-52
359482794	880	PREDICTED: putative disease resistance p	0.676	0.375	0.395	1e-51
224122700	799	nbs-lrr resistance protein [Populus tric	0.635	0.387	0.404	6e-51

>gi|255558785|ref|XP_002520416.1| leucine-rich repeat containing protein, putative [Ricinus communis] gi|223540401|gb|EEF41971.1| leucine-rich repeat containing protein, putative [Ricinus communis]

 Score =  249 bits (637), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 169/388 (43%), Positives = 229/388 (59%), Gaps = 42/388 (10%)

Query: 119 EMNEELHDIATQKDIQNECFSMAINGSEEPNATNALDEKVRHLMLIFSKAASLPISTLRV 178
           +M   +HD A Q  ++NECFS+ +N  EE     +L ++VRHL ++  K  S P S  R+
Sbjct: 271 KMYNIVHDFA-QYIVKNECFSIEVNDEEELKMM-SLHKEVRHLRVMLGKDVSFPSSIYRL 328

Query: 179 KRMRTLLIN--DHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLV-- 234
           K +RTL +    +S + AA L  LF  LT LR+L+             E+P +I KL+  
Sbjct: 329 KDLRTLWVQCKGNSKVGAA-LSNLFGRLTCLRSLNLSNCN------LAEIPSSISKLIHL 381

Query: 235 -------------LPETLCELYNLEKLDISDCFNLKELPEGIGKLINVKHLLNRGTNSLR 281
                        LPE LCEL NL+ L++  CF+L +LP G+ KLIN++HL N G   + 
Sbjct: 382 RQIDLSYNKDLKGLPEALCELDNLQTLNMDGCFSLVKLPRGVEKLINLRHLHNGGFEGV- 440

Query: 282 YMPVGIGRLTGLRTLGEFHVSAGGGVDGRKACRLESLKNLEHLQVC-GISRLGDVSDVGE 340
            +P GI +LT LR+L  F +    G D ++AC L  LKNL HLQ C  I  L  V+DVGE
Sbjct: 441 -LPKGISKLTCLRSLNRFSI----GQDNQEACNLGDLKNLNHLQGCVCIMGLEIVADVGE 495

Query: 341 AKRLELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKELEIEYYRGNT 400
           AK+ EL KK  ++ L L F K +    E RK+ D++LLL AL P   ++EL I  Y+G T
Sbjct: 496 AKQAELRKKTEVTRLELRFGKGD---AEWRKHHDDELLL-ALEPSPYVEELGIYDYQGRT 551

Query: 401 VFPSWMTSLTNLKSLDLSSCENCEQLPPLGKLQSLENLHIWRMESVKRVGDEFLGIESDH 460
           VFPSWM  L+NLK++ L++C+ CE LPPLGKL  LENL IW M+ V++VG EFLG+ES  
Sbjct: 552 VFPSWMIFLSNLKTVILTNCKTCEHLPPLGKLPFLENLRIWGMDGVQKVGLEFLGLESSS 611

Query: 461 HGSSSSSSVIIAFPKLKSLSIEVLRELE 488
             SS      +AFPKL +L    +R  E
Sbjct: 612 SSSSG-----VAFPKLINLRFMRMRNWE 634

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255549784|ref|XP_002515943.1| leucine-rich repeat containing protein, putative [Ricinus communis] gi|223544848|gb|EEF46363.1| leucine-rich repeat containing protein, putative [Ricinus communis]

 Score =  246 bits (627), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 167/388 (43%), Positives = 228/388 (58%), Gaps = 42/388 (10%)

Query: 119 EMNEELHDIATQKDIQNECFSMAINGSEEPNATNALDEKVRHLMLIFSKAASLPISTLRV 178
           +M   +HD A Q  ++NECFS+ +N  EE     +L ++VRHL ++  K  S P S  R+
Sbjct: 300 KMYNIVHDFA-QYIVKNECFSIEVNDEEELKMM-SLHKEVRHLRVMLGKDVSFPSSIYRL 357

Query: 179 KRMRTLLIN--DHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLV-- 234
           K +RTL +    +S + AA L  LF  LT LR+L+             E+P +I KL+  
Sbjct: 358 KDLRTLWVQCKGNSKVGAA-LSNLFGRLTCLRSLNLSNCN------LAEIPSSICKLIHL 410

Query: 235 -------------LPETLCELYNLEKLDISDCFNLKELPEGIGKLINVKHLLNRGTNSLR 281
                        LPE LCEL NL+ L++  CF+L +LP G+ KLIN++HL N G   + 
Sbjct: 411 RQIDLSYNKDLKGLPEALCELCNLQTLNMDGCFSLVKLPRGLEKLINLRHLHNGGFEGV- 469

Query: 282 YMPVGIGRLTGLRTLGEFHVSAGGGVDGRKACRLESLKNLEHLQVC-GISRLGDVSDVGE 340
            +P GI +LT LR+L  F +    G + ++AC L  LKNL HLQ C  I  L  V+DVGE
Sbjct: 470 -LPKGISKLTCLRSLNRFSI----GQNNQEACNLGDLKNLNHLQGCLCIMGLEIVADVGE 524

Query: 341 AKRLELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKELEIEYYRGNT 400
           AK+ EL KK  ++ L L F K +    E RK+ D+++LL AL P   ++EL I  Y+G T
Sbjct: 525 AKQAELRKKTEVTRLELRFGKGD---AEWRKHHDDEILL-ALEPSPYVEELGIYDYQGRT 580

Query: 401 VFPSWMTSLTNLKSLDLSSCENCEQLPPLGKLQSLENLHIWRMESVKRVGDEFLGIESDH 460
           VFPSWM  L+NLK++ L++C+ CE LPPLGKL  LENL IW M+ V++ G EFLG+ES  
Sbjct: 581 VFPSWMIFLSNLKTVILTNCKTCEHLPPLGKLPFLENLRIWGMDGVQKAGLEFLGLESSS 640

Query: 461 HGSSSSSSVIIAFPKLKSLSIEVLRELE 488
             SS      IAFPKL +L    +R  E
Sbjct: 641 SSSSG-----IAFPKLINLRFMRMRNWE 663

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359482788|ref|XP_003632840.1| PREDICTED: putative disease resistance protein RGA4-like [Vitis vinifera]

 Score =  222 bits (565), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 161/408 (39%), Positives = 234/408 (57%), Gaps = 59/408 (14%)

Query: 103 GFKQVFLRHDIANKIK-EMNEELHDIATQKDIQNECFSMAINGSEEPNATNALDEKVRHL 161
            F Q F +    N I+ +M++ +HD A Q   QNECF + ++ +++  + +   +K+RH+
Sbjct: 456 SFFQDFEKDTDGNIIRCKMHDIVHDFA-QFLTQNECFIVEVD-NQQMESIDLSFKKIRHI 513

Query: 162 MLIFSKAASLPISTLRVKRMRTLLIND---HSLLNAAILEELFRELTSLRALDFGGSYHS 218
            L+  ++    +ST  +K + TLL  +    S+L A  L  L R LT LRALD      S
Sbjct: 514 TLVVRESTPNFVSTYNMKNLHTLLAKEAFKSSVLVA--LPNLLRHLTCLRALDL-----S 566

Query: 219 TRLLTPEVPRNIEKLV---------------LPETLCELYNLEKLDISDCFNLKELPEGI 263
           +  L  E+P+ + KL+               LPET+C+LYNL+ L+I  C +L++LP+ +
Sbjct: 567 SNQLIEELPKEVGKLIHLRFLNLSGCFWLRELPETICDLYNLQTLNIQGCSSLRKLPQAM 626

Query: 264 GKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGRKACRLESLKNLEH 323
           GKLIN++HL N   N+ + +P GIGRL+ L+TL  F VS+ G  +G+    +  L+NL +
Sbjct: 627 GKLINLRHLENSFLNN-KGLPKGIGRLSSLQTLNVFIVSSHGNDEGQ----IGDLRNLNN 681

Query: 324 LQV-CGISRLGDVSDVGEAKRLELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEAL 382
           L+    I  L +V D GEA++ EL  K +L  LTL FD+EE  +G          + EAL
Sbjct: 682 LRGDLSIQGLDEVKDAGEAEKAELKNKVHLQDLTLGFDREEGTKG----------VAEAL 731

Query: 383 RPPLNLKELEIEYYRGNTVFPSWM--TSLTNLKSLDLSSCENCEQLPPLGKLQSLENLHI 440
           +P  NLK L I YY G+  +P+WM  +SL  LK L+L  CE C  LPPLG+L  LE L I
Sbjct: 732 QPHPNLKALHI-YYYGDREWPNWMMGSSLAQLKILNLKFCERCPCLPPLGQLPVLEELGI 790

Query: 441 WRMESVKRVGDEFLGIESDHHGSSSSSSVIIAFPKLKSLSIEVLRELE 488
           W+M  VK +G EFLG         SSS+V   FPKLK L+I  L +L+
Sbjct: 791 WKMYGVKYIGSEFLG---------SSSTV---FPKLKELAISGLDKLK 826

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255558779|ref|XP_002520413.1| hypothetical protein RCOM_1397400 [Ricinus communis] gi|223540398|gb|EEF41968.1| hypothetical protein RCOM_1397400 [Ricinus communis]

 Score =  220 bits (560), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 149/343 (43%), Positives = 202/343 (58%), Gaps = 40/343 (11%)

Query: 164 IFSKAASLPISTLRVKRMRTLLIN--DHSLLNAAILEELFRELTSLRALDFGGSYHSTRL 221
           +  K  S P S  R+K +RTL +    +S + AA L  LF  LT LR+L+      +   
Sbjct: 1   MLGKEVSFPSSIYRLKDLRTLWVQCKGNSKVGAA-LSNLFGRLTCLRSLNLSNCNLA--- 56

Query: 222 LTPEVPRNIEKLV---------------LPETLCELYNLEKLDISDCFNLKELPEGIGKL 266
              E+P +I KL+               LPE LCEL NL+ L++  CF+L +LP G+ KL
Sbjct: 57  ---EIPSSIRKLIHLRQIDLSYNKDLKGLPEALCELCNLQTLNMDGCFSLVKLPRGVEKL 113

Query: 267 INVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGRKACRLESLKNLEHLQV 326
           IN++HL N G   +  +P GI +LT LR+L  F +    G D ++AC L  LKNL HLQ 
Sbjct: 114 INLRHLHNGGFEGV--LPKGISKLTCLRSLNRFSI----GQDNQEACNLGDLKNLNHLQG 167

Query: 327 C-GISRLGDVSDVGEAKRLELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPP 385
           C  I RL  V+DVGEAK++EL KK  ++ L L F K +    E RK+ D++LLL AL P 
Sbjct: 168 CVCIMRLEIVADVGEAKQVELRKKTEVTRLELRFGKGD---AEWRKHHDDELLL-ALEPS 223

Query: 386 LNLKELEIEYYRGNTVFPSWMTSLTNLKSLDLSSCENCEQLPPLGKLQSLENLHIWRMES 445
             ++EL I  Y+G TVFPSWM  L+N K++ L++C+  E LPPLGKL  LENL IW M+ 
Sbjct: 224 PYVEELGIYDYQGRTVFPSWMIFLSNFKTVILTTCKTYEHLPPLGKLPFLENLRIWGMDG 283

Query: 446 VKRVGDEFLGIESDHHGSSSSSSVIIAFPKLKSLSIEVLRELE 488
           V++VG +FLG+ES    SS      +AFPKL +L    +R  E
Sbjct: 284 VQKVGLKFLGLESSSSSSSG-----VAFPKLINLRFMRMRNWE 321

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147825450|emb|CAN71072.1| hypothetical protein VITISV_000086 [Vitis vinifera]

 Score =  216 bits (551), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 155/407 (38%), Positives = 228/407 (56%), Gaps = 55/407 (13%)

Query: 103 GFKQVFLRHDIANKIK-EMNEELHDIATQKDIQNECFSMAINGSEEPNATNALDEKVRHL 161
            F Q F + D  N I  +M++ +HD A Q   QNECF + ++ +++  + +   +K+RH 
Sbjct: 478 SFFQDFEKDDDGNIICCKMHDIVHDFA-QFLTQNECFIVEVD-NQKKGSMDLFFQKIRHA 535

Query: 162 MLIFSKAASLPISTLRVKRMRTLLINDHSLLNAAI--LEELFRELTSLRALDFGGSYHST 219
            L+  ++     ST  +K + TLL  +   ++  +  L  L R LT LRALD      S 
Sbjct: 536 TLVVRESTPNFASTCNMKNLHTLLAKEEFBISXVLEALXNLLRHLTCLRALDL-----SR 590

Query: 220 RLLTPEVPRNIEKLV---------------LPETLCELYNLEKLDISDCFNLKELPEGIG 264
             L  E+P+ + KL+               LPET+C+LYNL+ L+I  C +L++LP+ +G
Sbjct: 591 NRLIEELPKEVGKLIHLRYLNLSLCYRLRELPETICDLYNLQTLNIEGCSSLQKLPQAMG 650

Query: 265 KLINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGRKACRLESLKNLEHL 324
           KLIN++HL N  T SL+ +P GIGRL+ L+TL  F VS+ G       C++  L+NL +L
Sbjct: 651 KLINLRHLENCNTGSLKGLPKGIGRLSSLQTLDVFIVSSHGN----DECQIGDLRNLNNL 706

Query: 325 Q-VCGISRLGDVSDVGEAKRLELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALR 383
           +    I RL +V D GEA++ EL  + +   LTL F K+E  +G          + EAL+
Sbjct: 707 RGGLSIQRLDEVKDAGEAEKAELKNRVHFQYLTLEFGKKEGTKG----------VAEALQ 756

Query: 384 PPLNLKELEIEYYRGNTVFPSWM--TSLTNLKSLDLSSCENCEQLPPLGKLQSLENLHIW 441
           P  NLK L+I  Y G+  +P+WM  +SL  LK L++ +C  C  LP LG+L  LE L IW
Sbjct: 757 PHPNLKSLDIFNY-GDREWPNWMMGSSLAQLKILEIGNCRRCPCLPLLGQLPVLEKLDIW 815

Query: 442 RMESVKRVGDEFLGIESDHHGSSSSSSVIIAFPKLKSLSIEVLRELE 488
            M+ VK +G EFLG         SSS+V   FPKLK L+I  + EL+
Sbjct: 816 GMDGVKYIGSEFLG---------SSSTV---FPKLKELNISRMDELK 850

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224115608|ref|XP_002332098.1| cc-nbs-lrr resistance protein [Populus trichocarpa] gi|222874918|gb|EEF12049.1| cc-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  213 bits (543), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 155/387 (40%), Positives = 216/387 (55%), Gaps = 47/387 (12%)

Query: 119 EMNEELHDIATQKDIQNECFSMAINGSEEPNATNALDEKVRHLMLIFSKAAS--LPISTL 176
           +M++ +HD A Q   +NECFS+ I+GS E +   +     RH M++     +  LP +  
Sbjct: 469 KMHDMVHDFA-QSLTKNECFSVEIDGSTE-SKIYSFSRDARHFMVVLRNYETDPLPATIH 526

Query: 177 RVKRMRTLLINDH-SLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLV- 234
             K++R+L+++ + SL+NAA L  L   L+ LR L F       R    EVP NI KL+ 
Sbjct: 527 SFKKLRSLIVDGYPSLMNAA-LPNLIANLSCLRTLKF------PRCGVEEVPSNIGKLIH 579

Query: 235 -------------LPETLCELYNLEKLDISDCFNLKELPEGIGKLINVKHL---LNRGTN 278
                        LPE +CELYN+  L++S C  L+ LP+ +G+L+ ++HL   +    +
Sbjct: 580 LRHVDLSFNLIRELPEEMCELYNMLTLNVSFCEKLERLPDNMGRLVKLRHLRVGIYWDDS 639

Query: 279 SLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGRKACRLESLKNLEHLQ-VCGISRLGDVSD 337
           S   M  G+  L+ LR L EFHVS  G     K   +  LK+L HLQ    I  LGDV D
Sbjct: 640 SFVKMS-GVEGLSSLRELDEFHVSGTG-----KVSNIGDLKDLNHLQGSLTIKWLGDVKD 693

Query: 338 VGEAKRLELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKELEIEYYR 397
             E K+ E+  KK+L+ L L+F    +   +R K  D+++L EAL PP NL+ L++  Y+
Sbjct: 694 PNEVKKAEMKSKKHLTRLDLFF----QSRTDREKINDDEVL-EALEPPPNLESLDLSNYQ 748

Query: 398 GNT-VFPSWMTSLTNLKSLDLSSCENCEQLPPLGKLQSLENLHIWRMESVKRVGDEFLGI 456
           G   VFPS +  L  ++  D    EN   LPPLGKL SLE L +  ME V RVG EFLG+
Sbjct: 749 GIIPVFPSCINKLRVVRLWDWGKIEN---LPPLGKLPSLEELTVGDMECVGRVGREFLGL 805

Query: 457 ESDHHG--SSSSSSVIIAFPKLKSLSI 481
             D  G  +SSSS+ IIAFPKLKSLS 
Sbjct: 806 RVDSKGEMTSSSSNTIIAFPKLKSLSF 832

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224122712|ref|XP_002318907.1| cc-nbs-lrr resistance protein [Populus trichocarpa] gi|222859580|gb|EEE97127.1| cc-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  213 bits (541), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 152/398 (38%), Positives = 223/398 (56%), Gaps = 39/398 (9%)

Query: 112 DIANKIK-EMNEELHDIATQKDIQNECFSMAINGSEEPNATNALDEKVRHLMLIFSKAAS 170
           DI   +K +M++ +HD A Q   +NEC ++ +N         ++ E+VRHL ++ S+  S
Sbjct: 492 DIFEGMKFKMHDIVHDFA-QYMTKNECLTVDVNTLGGATVETSI-ERVRHLSMMVSEETS 549

Query: 171 LPISTLRVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNI 230
            P+S  + K +R+LLI+       A L +LF++LT +R+L+   S         E+P  +
Sbjct: 550 FPVSIHKAKGLRSLLIDTRDPSLGAALPDLFKQLTCIRSLNLSASS------IKEIPNEV 603

Query: 231 EKLV---------------LPETLCELYNLEKLDISDCFNLKELPEGIGKLINVKHL-LN 274
            KL+               LPET+C+L NL+ LD++ C +LKELP  IGKLI ++HL + 
Sbjct: 604 GKLIHLRHVNLARCGELESLPETMCDLCNLQSLDVTWCRSLKELPNAIGKLIKLRHLRIY 663

Query: 275 RGTNSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGRKACRLESLKNLEHL-QVCGISRL- 332
           R  + + ++P GI R+T LRTL  F V  GGG +  KA  L  LKNL H+     I  L 
Sbjct: 664 R--SGVDFIPKGIERITCLRTLDVFKV-CGGGENESKAANLRELKNLNHIGGSLNIRNLG 720

Query: 333 GDVSDVGEAKRLELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKELE 392
           G + D  +A   +L  KK L  L L FD+E+    E + NE +  L+EAL+PP NL+ L 
Sbjct: 721 GGIEDASDAAEAQLKNKKRLRRLELVFDREKT---ELQANEGS--LIEALQPPSNLEYLT 775

Query: 393 IEYYRGNTVFPSWMTSLTNLKSLDLSSCENCEQLPPLGKLQSLENLHIWRMESVKRVGDE 452
           I  Y G    P+WM +LT L +L+L  C   E LPPLG+L +LE L + R   V+R+   
Sbjct: 776 ISSY-GGFDLPNWMMTLTRLLALELHDCTKLEVLPPLGRLPNLERLAL-RSLKVRRLDAG 833

Query: 453 FLGIESDHHGSSSSSSV--IIAFPKLKSLSIEVLRELE 488
           FLGIE D + S +   +  + AFPKLK L I  ++E +
Sbjct: 834 FLGIEKDENASINEGEIARVTAFPKLKILEIWNIKEWD 871

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224115620|ref|XP_002332101.1| cc-nbs-lrr resistance protein [Populus trichocarpa] gi|222874921|gb|EEF12052.1| cc-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  211 bits (538), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 156/389 (40%), Positives = 213/389 (54%), Gaps = 48/389 (12%)

Query: 119 EMNEELHDIATQKDIQNECFSMAINGSEEPNATNALDEKVRHLMLIFSKAASLPISTLRV 178
           +M++ +HD+A Q   +NEC S+ I+G  E    ++     RH M++F    S P +   +
Sbjct: 499 KMHDMVHDLA-QNLTKNECSSVDIDGPTELK-IDSFSINARHSMVVFRNYNSFPATIHSL 556

Query: 179 KRMRTLLIN-DHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLV--- 234
           K++R+L+++ D S +NAA L  L   L+ LR L   G          EVP NI KL+   
Sbjct: 557 KKLRSLIVDGDPSSMNAA-LPNLIANLSCLRTLKLSGCG------IEEVPSNIGKLIHLR 609

Query: 235 ------------LPETLCELYNLEKLDISDCFNLKELPEGIGKLINVKHLLNRGTNSLRY 282
                       LPE + ELYN+  LD+S C  L+ LP+ IG+L  ++HL       L +
Sbjct: 610 HVDFSWNENIKELPEEMFELYNMLTLDVSFCNKLERLPDNIGRLAKLRHLSIHDWRDLSF 669

Query: 283 MPV-GIGRLTGLRTLGEFHVSAGGGVDGRKACRLESLKNLEHLQ-VCGISRLGDVSDVGE 340
           + + G+  LT LR L +FHVS   G D  K   +  L+NL HLQ    IS LGDV D  E
Sbjct: 670 VKMRGVKGLTSLRELDDFHVS---GSD--KESNIGDLRNLNHLQGSLMISWLGDVKDPDE 724

Query: 341 AKRLELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKELEIEYYRGNT 400
            K+ EL+ KK+L+ L L F    +   +R K  D+++L EAL PP N+    I YY+G  
Sbjct: 725 VKKAELNSKKHLAHLGLNF----QSRTDREKIHDDEVL-EALEPPPNIYSSRIGYYQGVI 779

Query: 401 ---VFPSWMTSLTNLKSLDLSSCENCEQLPPLGKLQSLENLHIWRMESVKRVGDEFLGIE 457
              VFP W   +  L++++L      E LPPLGKL SLE LH+  ME V RVG EFLG+ 
Sbjct: 780 LLRVFPGW---INKLRAVELRDWRKIENLPPLGKLPSLEALHVIGMECVGRVGREFLGLG 836

Query: 458 SDHHGS-----SSSSSVIIAFPKLKSLSI 481
            D   S     SSSS+ IIAFPKLKSLS 
Sbjct: 837 DDSDISIGEMTSSSSNTIIAFPKLKSLSF 865

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359482794|ref|XP_002268547.2| PREDICTED: putative disease resistance protein RGA4-like [Vitis vinifera]

 Score =  210 bits (534), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 151/382 (39%), Positives = 209/382 (54%), Gaps = 52/382 (13%)

Query: 119 EMNEELHDIATQKDIQNECFSMAINGSEEPNATNALDEKVRHLMLIFSKAASLPISTLRV 178
           +M++ +HD A Q   +NECF M +  +EE     +  +K+RH  LI  +     +ST ++
Sbjct: 477 KMHDIVHDFA-QFLTKNECFIMNVENAEEGRTKTSF-QKIRHATLIGQQRYPNFVSTYKM 534

Query: 179 KRMRTLLIN-DHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLV--- 234
           K + TLL+    S  +   L  LF+ LT LRAL+   +      L  E+P+ + KL+   
Sbjct: 535 KNLHTLLLKFTFSSTSDEALPNLFQHLTCLRALNLARNP-----LIMELPKAVGKLIHLK 589

Query: 235 ------------LPETLCELYNLEKLDISDCFNLKELPEGIGKLINVKHLLNRGTNSLRY 282
                       LPET+C+LYNL+ L+IS CF+L ELP+ +GKLIN++HL N G   L+ 
Sbjct: 590 YLSLSDCHKLRELPETICDLYNLQTLNISRCFSLVELPQAMGKLINLRHLQNCGALDLKG 649

Query: 283 MPVGIGRLTGLRTLGEFHVSAGGGVDGRKACRLESLKNLEHLQ-VCGISRLGDVSDVGEA 341
           +P GI RL  L+TL EF VS+    DG   C++  L+NL +L+    I  L  V D  E 
Sbjct: 650 LPKGIARLNSLQTLEEFVVSS----DGDAECKIGDLRNLNNLRGELEIRGLRKVEDAREV 705

Query: 342 KRLELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKELEIEYYRGNTV 401
           ++ EL  K ++  LTL FD ++  +G          + EAL P  NLK L I  Y G+  
Sbjct: 706 QKAELKNKIHIHHLTLVFDLKDGTKG----------VAEALHPHPNLKSLCIWGY-GDIE 754

Query: 402 FPSWM--TSLTNLKSLDLSSCENCEQLPPLGKLQSLENLHIWRMESVKRVGDEFLGIESD 459
           +  WM  +SLT LK+L+LS C  C  LPPLG+L  LE L I  MESVK +G EFLG    
Sbjct: 755 WHDWMMRSSLTQLKNLELSHCSGCRCLPPLGELPVLEKLKIKDMESVKHIGGEFLG---- 810

Query: 460 HHGSSSSSSVIIAFPKLKSLSI 481
                  SS  IAFP LK L+ 
Sbjct: 811 -------SSSTIAFPNLKKLTF 825

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224122700|ref|XP_002318904.1| nbs-lrr resistance protein [Populus trichocarpa] gi|222859577|gb|EEE97124.1| nbs-lrr resistance protein [Populus trichocarpa]

 Score =  208 bits (529), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 142/351 (40%), Positives = 197/351 (56%), Gaps = 41/351 (11%)

Query: 156 EKVRHLMLIFSKAASLPISTLRVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGS 215
           E+VRHL ++ S+  S P+S  + K +R+LLI+       A L +LF++LT +R+LD   S
Sbjct: 386 ERVRHLSMMLSEETSFPVSIHKAKGLRSLLIDTRDPSLGAALPDLFKQLTCIRSLDLSKS 445

Query: 216 YHSTRLLTPEVPRNIEKLV---------------LPETLCELYNLEKLDISDCFNLKELP 260
                    E+P  + KL+               LPET+C+L NL+ LD++ C +LK+LP
Sbjct: 446 S------IKEIPNEVGKLIHLRHLNLASCGELESLPETMCDLCNLQSLDVTWCGSLKKLP 499

Query: 261 EGIGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGRKACRLESLKN 320
             IGKLI ++HL   G+  + ++P GI R+  LRTL  F V  GGG +  KA  L  LKN
Sbjct: 500 NAIGKLIKLRHLRINGSG-VDFIPKGIERIACLRTLNVFIV-CGGGENESKAANLRELKN 557

Query: 321 LEHL-QVCGISRLGDVSDVGEAKRLELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLL 379
           L H+    GI  L D SD  EA   +L  KK L  L L FD           N+++ +L+
Sbjct: 558 LNHIGGSLGIRNLQDASDAAEA---QLKNKKRLLRLELDFD----------YNQESGILI 604

Query: 380 EALRPPLNLKELEIEYYRGNTVFPSWMTSLTNLKSLDLSSCENCEQLPPLGKLQSLENLH 439
           EALRPP +LK L I  Y G    PSWM +LT L+ L LS C   E + PLG+L +LE+L 
Sbjct: 605 EALRPPSDLKYLTISRY-GGLELPSWMMTLTRLQELILSDCTKLEVMRPLGRLPNLESL- 662

Query: 440 IWRMESVKRVGDEFLGIESDHHGSSSSSSV--IIAFPKLKSLSIEVLRELE 488
           + R   V+R+   FLGIE D + S +   +  + AFPKLK+L I  L E+E
Sbjct: 663 VLRSLKVRRLDAGFLGIEKDENASINEGEIARVTAFPKLKTLWIGNLEEVE 713

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	488
TAIR|locus:2091672	1054	AT3G14470 [Arabidopsis thalian	0.565	0.261	0.303	1e-25
TAIR|locus:2091662	1424	AT3G14460 [Arabidopsis thalian	0.741	0.254	0.285	1e-21
UNIPROTKB|O48647	1802	O48647 "XA1" [Oryza sativa (ta	0.5	0.135	0.233	7.9e-08
TAIR|locus:2098110	1219	AT3G44670 [Arabidopsis thalian	0.284	0.114	0.322	5.1e-06
TAIR|locus:2147992	1189	AT5G11250 [Arabidopsis thalian	0.481	0.197	0.262	5.5e-06
TAIR|locus:2031366	898	AT1G63350 "AT1G63350" [Arabido	0.504	0.273	0.234	7.1e-06
TAIR|locus:2076043	1194	RPP1 "recognition of peronospo	0.272	0.111	0.305	3.9e-05
TAIR|locus:2173293	1059	AT5G38340 [Arabidopsis thalian	0.272	0.125	0.269	0.00014
ZFIN|ZDB-GENE-080917-20	994	mfhas1 "malignant fibrous hist	0.321	0.157	0.298	0.00017
TAIR|locus:2094498	1981	AT3G25510 [Arabidopsis thalian	0.375	0.092	0.268	0.00025

TAIR|locus:2091672 AT3G14470 [Arabidopsis thaliana (taxid:3702)]

 Score = 266 (98.7 bits), Expect = 1.0e-25, Sum P(2) = 1.0e-25
 Identities = 94/310 (30%), Positives = 140/310 (45%)

Query:   168 AASLPISTLR-VKRMRTLL---INDHS---LLNAAILEELFRELTSLRALDFGGSYHSTR 220
             A  +    LR VK +RT L   + + S    L+  + E+L   LT LR L    S++   
Sbjct:   534 AEPMEFEALREVKFLRTFLPLSLTNSSRSCCLDQMVSEKLLPTLTRLRVLSL--SHYKIA 591

Query:   221 LLTPEVPRNI-----------EKLVLPETLCELYNLEKLDISDCFNLKELPEGIGKLINV 269
              L P+  +NI           E   LP++LC +YNL+ L +S C +LKELP  I  LIN+
Sbjct:   592 RLPPDFFKNISHARFLDLSRTELEKLPKSLCYMYNLQTLLLSYCSSLKELPTDISNLINL 651

Query:   270 KHLLNRGTNSLRYMPVGIXXXXXXXXXXEFHVSAGGGVDGRKACRLESLKNLE-HLQVCG 328
             ++L   GT  LR MP              F VSA    DG +   L  L +L   L++  
Sbjct:   652 RYLDLIGTK-LRQMPRRFGRLKSLQTLTTFFVSAS---DGSRISELGGLHDLHGKLKIVE 707

Query:   329 ISRLGDVSDVGEAKRLELDKKKYLSSLTLWFXXXXXXXXXXXXXXXXQXXXXXXXXXXXX 388
             + R+ DV+D  EA    L+ KK+L  +   +                Q            
Sbjct:   708 LQRVVDVADAAEAN---LNSKKHLREIDFVWRTGSSSSENNTNPHRTQNEAEVFEKLRPH 764

Query:   389 KELE---IEYYRGNTVFPSWMT--SLTNLKSLDLSSCENCEQLPPLGKLQSLENLHIWRM 443
             + +E   IE Y+G   FP W++  S + +  + L  C+ C  LP LG+L  L+ LHI  M
Sbjct:   765 RHIEKLAIERYKGRR-FPDWLSDPSFSRIVCIRLRECQYCTSLPSLGQLPCLKELHISGM 823

Query:   444 ESVKRVGDEF 453
               ++ +G +F
Sbjct:   824 VGLQSIGRKF 833

GO:0005576 "extracellular region" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

TAIR|locus:2091662 AT3G14460 [Arabidopsis thaliana (taxid:3702)]

 Score = 244 (91.0 bits), Expect = 1.0e-21, Sum P(3) = 1.0e-21
 Identities = 116/407 (28%), Positives = 174/407 (42%)

Query:   108 FLRHDIANKIKEMNEELHDIATQKDIQNE-CFSMAINGSEEPNATNALDEKVRHLMLIFS 166
             F R DI      M++ ++D+A  K +  + CF +     E+ N    +    RH     S
Sbjct:   475 FQRLDITMTSFVMHDLMNDLA--KAVSGDFCFRL-----EDDNIPE-IPSTTRHFSFSRS 526

Query:   167 KA-ASLPISTL-RVKRMRTLL-IND----HSL-LNAAILEELFRELTSLRALDFGGSYHS 218
             +  AS+   ++   + +RT+L  N      SL L   +L  L   L+ LR L     Y  
Sbjct:   527 QCDASVAFRSICGAEFLRTILPFNSPTSLESLQLTEKVLNPLLNALSGLRILSLS-HYQI 585

Query:   219 TRLLTPEVPRNIEKL-----------VLPETLCELYNLEKLDISDCFNLKELPEGIGKLI 267
             T L  P+  + ++ L            LPE +C L NL+ L +S+C +L  LP+ I +LI
Sbjct:   586 TNL--PKSLKGLKLLRYLDLSSTKIKELPEFVCTLCNLQTLLLSNCRDLTSLPKSIAELI 643

Query:   268 NVKHLLNRGTNSLRYMPVGIXXXXXXXXXXEFHVSAGGGVDGRKACRLESLKNLEHLQ-V 326
             N++ L   GT  L  MP GI           F +   G + G     L  LK L HL+  
Sbjct:   644 NLRLLDLVGT-PLVEMPPGIKKLRSLQKLSNFVI---GRLSG---AGLHELKELSHLRGT 696

Query:   327 CGISRLGDVSDVGEAKRLELDKKKYLSSLTL-WFXXXXXXXXXXXXXXX--XQXXXXXXX 383
               IS L +V+   EAK   L +K +L  L L W                   +       
Sbjct:   697 LRISELQNVAFASEAKDAGLKRKPFLDGLILKWTVKGSGFVPGSFNALACDQKEVLRMLE 756

Query:   384 XXXXXKELEIEYYRGNTVFPSWM--TSLTNLKSLDLSSCENCEQLPPLGKLQSLENLHIW 441
                  K   IE Y+G   FP W+  +S   + S+ LSSC  C  LPP+G+L SL+ L I 
Sbjct:   757 PHPHLKTFCIESYQGGA-FPKWLGDSSFFGITSVTLSSCNLCISLPPVGQLPSLKYLSIE 815

Query:   442 RMESVKRVGDEFLGIESDHHGXXXXXXVIIAFPKLKSLSIEVLRELE 488
             +   +++VG +F   E++  G       I+ F  +      +  ELE
Sbjct:   816 KFNILQKVGLDFFFGENNSRGVPFQSLQILKFYGMPRWDEWICPELE 862

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

UNIPROTKB|O48647 O48647 "XA1" [Oryza sativa (taxid:4530)]

 Score = 99 (39.9 bits), Expect = 7.9e-08, Sum P(3) = 7.9e-08
 Identities = 65/278 (23%), Positives = 113/278 (40%)

Query:    97 FKTEEFGFKQVFLRHDIANKIKEMNEELHDIATQKDIQNECFSMAINGSEEPNATNAL-- 154
             F +E F      L HD+A K+ +      + AT     +EC  +A +       T++   
Sbjct:   620 FSSEYFVMHD--LMHDLAQKVSQT-----EYATIDG--SECTELAPSIRHLSIVTDSAYR 670

Query:   155 DEKVRHLML--IFSKAASLPISTLRVKRMRTLLINDHSLLNAAILEELFRELTSLRALDF 212
              EK R++    +F K   + + + R K    +LI  +        ++ F+E   LR L  
Sbjct:   671 KEKYRNISRNEVFEKRL-MKVKS-RSKLRSLVLIGQYDSHFFKYFKDAFKEAQHLRLLQI 728

Query:   213 GGSY-----------HSTRLLTPEVPRNIEKLVLPETLCELYNLEKLDISDCFNLKELPE 261
               +Y           +ST L   ++        LP +L + Y+L+ LDI   F +  +  
Sbjct:   729 TATYADSDSFLSSLVNSTHLRYLKIVTEESGRTLPRSLRKYYHLQVLDIGYRFGIPRISN 788

Query:   262 GIGKLINVKHLLNRGTNSLRYMPVGIXXXXXXXXXXEFHVSAGGGVDGRKACRLESLKNL 321
              I  L++++HL+    + +      I           F V     + G +  +L+S+  L
Sbjct:   789 DINNLLSLRHLV--AYDEVCSSIANIGKMTSLQELGNFIVQ--NNLSGFEVTQLKSMNKL 844

Query:   322 EHLQVCGISRLGDVSDVGEAKRLELDKKKYLSSLTL-W 358
               L V   S+L +V    EA   +L  K++L  L L W
Sbjct:   845 VQLSV---SQLENVRTQEEACGAKLKDKQHLEKLHLSW 879

GO:0006915 "apoptotic process" evidence=IGI

GO:0006952 "defense response" evidence=IGI

TAIR|locus:2098110 AT3G44670 [Arabidopsis thaliana (taxid:3702)]

 Score = 109 (43.4 bits), Expect = 5.1e-06, Sum P(2) = 5.1e-06
 Identities = 48/149 (32%), Positives = 74/149 (49%)

Query:   146 EEPN---ATNALDEKVRHLMLIFSKAASLP-ISTL-RVKRMR-TLLINDHSLLNAAILEE 199
             E PN   ATN  + K+R    +    +S+  +++L R+   R + L+   S  NA  LEE
Sbjct:   731 ELPNLSTATNLEELKLRDCSSLVELPSSIEKLTSLQRLYLQRCSSLVELPSFGNATKLEE 790

Query:   200 LFRE-LTSLRALDFGGSYHSTRLLTPEVPRNIEKLVLPETLCELYNLEKLDISDCFNLKE 258
             L+ E  +SL  L    S ++  L    +  N  ++V    +    NL+KLD+ +C +L E
Sbjct:   791 LYLENCSSLEKLP--PSINANNLQQLSLI-NCSRVVELPAIENATNLQKLDLGNCSSLIE 847

Query:   259 LPEGIGKLINVKHLLNRGTNSLRYMPVGI 287
             LP  IG   N+K L   G +SL  +P  I
Sbjct:   848 LPLSIGTATNLKELNISGCSSLVKLPSSI 876

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS;TAS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0042742 "defense response to bacterium" evidence=ISS

TAIR|locus:2147992 AT5G11250 [Arabidopsis thaliana (taxid:3702)]

 Score = 118 (46.6 bits), Expect = 5.5e-06, Sum P(2) = 5.5e-06
 Identities = 68/259 (26%), Positives = 116/259 (44%)

Query:   111 HDIANKIKEMNEELHD-IATQKDIQNECFSMAINGSEEPNATNALDEKVRHLMLIFSKAA 169
             H I  +  +MNE + + ++  + ++ +C    +  S      + L  K++ L  I+    
Sbjct:   588 HYIIEEEFDMNERVFEGMSNLQFLRFDCDHDTLQLSR---GLSYLSRKLQLLDWIYFPMT 644

Query:   170 SLPISTLRVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRN 229
              LP ST+ V+ +  L +  HS L+  +L E  + L +LR +D   S +   L       N
Sbjct:   645 CLP-STVNVEFLIELNLT-HSKLD--MLWEGVKPLHNLRQMDLSYSVNLKELPDLSTAIN 700

Query:   230 IEKLVL---------PETLCELYNLEKLDISDCFNLKELPEGIGKLINVKHLLNRGTNSL 280
             + KL+L         P  +    NLE LD++ C +L ELP   G  IN++ LL R  ++L
Sbjct:   701 LRKLILSNCSSLIKLPSCIGNAINLEDLDLNGCSSLVELPS-FGDAINLQKLLLRYCSNL 759

Query:   281 RYMPVGIXXXXXXXXXXEFHVSAGGGVDGRKACRLESLKNLEHLQVCGISRLGDV-SDVG 339
               +P  I           ++ S+      R    + +  NL  L + G S L ++ S +G
Sbjct:   760 VELPSSIGNAINLRELDLYYCSSLI----RLPSSIGNAINLLILDLNGCSNLLELPSSIG 815

Query:   340 EAKRLE-LDKKKYLSSLTL 357
              A  L+ LD ++    L L
Sbjct:   816 NAINLQKLDLRRCAKLLEL 834

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2031366 AT1G63350 "AT1G63350" [Arabidopsis thaliana (taxid:3702)]

 Score = 139 (54.0 bits), Expect = 7.1e-06, P = 7.1e-06
 Identities = 64/273 (23%), Positives = 111/273 (40%)

Query:   229 NIEKLVLPETLCELYNLEKLDISDCFNLKELPEGIGKLINVKHLLNRGTNSLRYMPVGIX 288
             ++EK +  E    +  L  LD+S  + L ELP GI +L+++++L N  +  +R++P G+ 
Sbjct:   548 HLEK-ISSEFFNSMPKLAVLDLSGNYYLSELPNGISELVSLQYL-NLSSTGIRHLPKGLQ 605

Query:   289 XXXXXXXXXEFHVSAGGGVDGRKACRLESLKNLEHLQVCGISRLGDVSDVGEAKRLE--- 345
                          S  G + G     +  L NL+ L++ G S   D+  V E + LE   
Sbjct:   606 ELKKLIHLYLERTSQLGSMVG-----ISCLHNLKVLKLSGSSYAWDLDTVKELEALEHLE 660

Query:   346 ----------LDKKKYLSSLTLWFXXXXXXXXXXXXXXXXQXXXXXXXXXXXXKELEIEY 395
                       L   ++LSS  L                               +E  IE+
Sbjct:   661 VLTTTIDDCTLGTDQFLSSHRLMSCIRFLKISNNSNRNRNSSRISLPVTMDRLQEFTIEH 720

Query:   396 YRGNTVFPSWMTSLTNLKSLDLSSCENCEQLPPLGKLQSLENLHIWRMESVKRVGDEFLG 455
                + +    + S ++L  ++LS+C    +L  L    +L+ LH+     +    ++ + 
Sbjct:   721 CHTSEIKMGRICSFSSLIEVNLSNCRRLRELTFLMFAPNLKRLHVVSSNQL----EDIIN 776

Query:   456 IESDHHGXXXXXXVIIAFPKLKSLSIEVLRELE 488
              E  H G       I+ FPKL  L +  LREL+
Sbjct:   777 KEKAHDGEKSG---IVPFPKLNELHLYNLRELK 806

GO:0005575 "cellular_component" evidence=ND

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2076043 RPP1 "recognition of peronospora parasitica 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 113 (44.8 bits), Expect = 3.9e-05, Sum P(2) = 3.9e-05
 Identities = 48/157 (30%), Positives = 75/157 (47%)

Query:   146 EEPN---ATNALDEKVRHLMLIFSKAASLPISTLRVKRMRTLLINDHSLLNAAILEEL-- 200
             E PN   ATN  + K+R+     S    LP S   ++++ +L I D  L N + LE+L  
Sbjct:   729 ELPNLSTATNLEELKLRNC----SSLVELPSS---IEKLTSLQILD--LENCSSLEKLPA 779

Query:   201 FRELTSLRALDFGGSYHSTRL-LTPEVPRNIEKL---------VLPETLCELYNLEKLDI 250
                 T LR L          L L+     N+++L          LP ++ ++ +LE  D+
Sbjct:   780 IENATKLRELKLQNCSSLIELPLSIGTATNLKQLNISGCSSLVKLPSSIGDITDLEVFDL 839

Query:   251 SDCFNLKELPEGIGKLINVKHLLNRGTNSLRYMPVGI 287
             S+C +L  LP  IG L N+  L+ RG + L  +P+ I
Sbjct:   840 SNCSSLVTLPSSIGNLQNLCKLIMRGCSKLEALPINI 876

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS;TAS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0002239 "response to oomycetes" evidence=IDA

GO:0000139 "Golgi membrane" evidence=IDA

GO:0005789 "endoplasmic reticulum membrane" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009817 "defense response to fungus, incompatible interaction" evidence=IMP;TAS

GO:0030275 "LRR domain binding" evidence=ISS

TAIR|locus:2173293 AT5G38340 [Arabidopsis thaliana (taxid:3702)]

 Score = 100 (40.3 bits), Expect = 0.00014, Sum P(2) = 0.00014
 Identities = 41/152 (26%), Positives = 71/152 (46%)

Query:   148 PNATNALDEKVRHLMLIFSKAASLPISTLRVKRMRTLLINDHSLLNAAILEELF---REL 204
             P   N L +K+R +   +    SLP +        T L+N H  +  + LE+L+   + L
Sbjct:   626 PQGLNYLPKKLRLIEWDYFPMKSLPSNFCT-----TYLVNLH--MRKSKLEKLWEGKQPL 678

Query:   205 TSLRALDFGGSYH---------STRLLTPEVPRNIEKLVLPETLCELYNLEKLDISDCFN 255
              +L+ ++   S +         +T+L    + R    + +P ++    NLEKL++  C +
Sbjct:   679 GNLKWMNLSNSRNLKELPDLSTATKLQDLNLTRCSSLVEIPFSIGNTTNLEKLNLVMCTS 738

Query:   256 LKELPEGIGKLINVKHLLNRGTNSLRYMPVGI 287
             L ELP  IG L  ++ L  RG + L  +P  I
Sbjct:   739 LVELPSSIGSLHKLRELRLRGCSKLEVLPTNI 770

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

ZFIN|ZDB-GENE-080917-20 mfhas1 "malignant fibrous histiocytoma amplified sequence 1" [Danio rerio (taxid:7955)]

 Score = 131 (51.2 bits), Expect = 0.00017, Sum P(2) = 0.00017
 Identities = 52/174 (29%), Positives = 81/174 (46%)

Query:   120 MNEELHDIATQKDIQNECFSMAINGSEE-PNATNALDEKVRHLMLIFSKAASLPISTLRV 178
             +N    DI   K ++  CFS   N  +  P+    L + +  L + F++    P S  ++
Sbjct:   108 LNHFSEDIDLLKGLKKLCFSH--NKIQYLPSQIGTL-QSLEELDISFNELHDFPRSFSQL 164

Query:   179 KRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGS----YHSTRLLTPEVP----RNI 230
             +++RTL + DH+ L     E L   L+ L  LD  G+         ++   +      + 
Sbjct:   165 RKLRTLDV-DHNKLQRFPSEIL--ALSDLEELDCSGNKLEGLPGNIMMLQSIKILWLSST 221

Query:   231 EKLVLPETLCELYNLEKLDISDCFNLKELPEGIGKLINVKHLLNRGTNSLRYMP 284
               L LPET CEL NLE L + + F L  LP+  GKL  +K +LN  +NS    P
Sbjct:   222 HLLSLPETFCELQNLESLMLDNNF-LTRLPQSFGKLQKLK-MLNLSSNSFEDFP 273

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

TAIR|locus:2094498 AT3G25510 [Arabidopsis thaliana (taxid:3702)]

 Score = 105 (42.0 bits), Expect = 0.00025, Sum P(2) = 0.00025
 Identities = 55/205 (26%), Positives = 90/205 (43%)

Query:    93 SCLGFKTEEFGFKQVFLRHDIANKIKEMNEELHDIATQKDIQ-NECFSMAINGSEEPNAT 151
             SC+G    + G  QV   H   + I E+     ++   + +  NEC S+    S   NA 
Sbjct:   705 SCVG----KLGKLQVLCLHGCTS-ILELPSFTKNVTGLQSLDLNECSSLVELPSSIGNAI 759

Query:   152 NALDEKVRHLMLIFSKAASLPISTLRVKRMRTLLINDHSLL-------NAAILEELFREL 204
             N     +++L L   +   LP+S ++   ++  ++N  S L       NA  L+ L  +L
Sbjct:   760 N-----LQNLDLGCLRLLKLPLSIVKFTNLKKFILNGCSSLVELPFMGNATNLQNL--DL 812

Query:   205 TSLRAL-DFGGSYHSTRLLTPEVPRNIEKLV-LPETLCELYNLEKLDISDCFNLKELPEG 262
              +  +L +   S  +   L      N   LV LP  +    NLE LD+  C +L E+P  
Sbjct:   813 GNCSSLVELPSSIGNAINLQNLDLSNCSSLVKLPSFIGNATNLEILDLRKCSSLVEIPTS 872

Query:   263 IGKLINVKHLLNRGTNSLRYMPVGI 287
             IG + N+  L   G +SL  +P  +
Sbjct:   873 IGHVTNLWRLDLSGCSSLVELPSSV 897

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00003279001 SubName- Full=Chromosome undetermined scaffold_141, whole genome shotgun sequence; (816 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	488
PLN03210	1153	PLN03210, PLN03210, Resistant to P	5e-05
PLN03210	1153	PLN03210, PLN03210, Resistant to P	0.002

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 45.6 bits (108), Expect = 5e-05
 Identities = 67/245 (27%), Positives = 105/245 (42%), Gaps = 40/245 (16%)

Query: 197 LEELF---RELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVLPETLCELYNLEKLDISDC 253
           LE+L+     LT LR +D  GS            +N++++  P+ L    NLE L +SDC
Sbjct: 623 LEKLWDGVHSLTGLRNIDLRGS------------KNLKEI--PD-LSMATNLETLKLSDC 667

Query: 254 FNLKELPEGIGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGRKAC 313
            +L ELP  I  L  ++ L      +L  +P GI     L++L   ++S           
Sbjct: 668 SSLVELPSSIQYLNKLEDLDMSRCENLEILPTGIN----LKSLYRLNLSG--------CS 715

Query: 314 RLESLKNLEHLQVCGISRLGDVSDVGEAKRLELDKKKYLSSLTLWFDKEEEEEGERRKNE 373
           RL+S  ++       IS L    D+ E    E      L +L      E + E    + +
Sbjct: 716 RLKSFPDIS----TNISWL----DLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQ 767

Query: 374 DNQLLLEALRPPLNLKELEIEYYRGNTVFPSWMTSLTNLKSLDLSSCENCEQLPPLGKLQ 433
               L+  L P  +L  L +         PS + +L  L+ L++ +C N E LP    L+
Sbjct: 768 PLTPLMTMLSP--SLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLE 825

Query: 434 SLENL 438
           SLE+L
Sbjct: 826 SLESL 830

syringae 6; Provisional. Length = 1153

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 40.6 bits (95), Expect = 0.002
 Identities = 25/69 (36%), Positives = 38/69 (55%), Gaps = 10/69 (14%)

Query: 219 TRLLTPEVPRNIEKLVLPETLCELYNLEKLDISDCFNLKELPEGIGKLINVKHLLN---R 275
           TRL   ++P  +E   LP ++  L+ LE L+I +C NL+ LP G    IN++ L +    
Sbjct: 781 TRLFLSDIPSLVE---LPSSIQNLHKLEHLEIENCINLETLPTG----INLESLESLDLS 833

Query: 276 GTNSLRYMP 284
           G + LR  P
Sbjct: 834 GCSRLRTFP 842

syringae 6; Provisional. Length = 1153

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	488
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.96
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.9
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.89
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.86
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.84
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.8
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.78
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.74
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.73
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.68
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.66
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.64
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.63
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.56
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.55
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.5
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.46
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.42
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.4
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.39
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.36
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.28
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.26
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.12
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.01
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.98
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.97
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.84
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.84
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.81
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.74
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.72
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.68
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.67
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.6
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.59
PLN03150	623	hypothetical protein; Provisional	98.54
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.49
KOG4341	483	consensus F-box protein containing LRR [General fu	98.48
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.42
PLN03150	623	hypothetical protein; Provisional	98.39
KOG4341	483	consensus F-box protein containing LRR [General fu	98.37
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.09
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.04
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.01
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	97.98
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.94
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.94
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.88
PRK15386	426	type III secretion protein GogB; Provisional	97.87
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.86
PRK15386	426	type III secretion protein GogB; Provisional	97.81
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	97.79
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.64
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.57
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.56
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.41
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.32
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.19
PF00931	287	NB-ARC: NB-ARC domain; InterPro: IPR002182 This is	97.15
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.13
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.99
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.66
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	96.61
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.52
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.26
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.11
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	95.79
KOG3864	221	consensus Uncharacterized conserved protein [Funct	95.06
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	95.04
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	94.34
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	94.29
KOG3864	221	consensus Uncharacterized conserved protein [Funct	91.86
KOG4308	478	consensus LRR-containing protein [Function unknown	91.5
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	90.55
KOG0473	326	consensus Leucine-rich repeat protein [Function un	90.09
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	88.27
PF12061	402	DUF3542: Protein of unknown function (DUF3542); In	85.68
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	80.5
smart00370	26	LRR Leucine-rich repeats, outliers.	80.5

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.96  E-value=5.3e-30  Score=267.94  Aligned_cols=264  Identities=26%  Similarity=0.293  Sum_probs=185.7

Q ss_pred             CcHHHHHHHHHHHHhhhc-hHHH--HHHHHHhhhhhhhccCcCcccccccccccccceeecccccCCCcccccchhhhHH
Q 038150           34 KDKAVRHWLGRLKYASYD-IEDV--LDEWITGRRKLQIEGGIGENALIAPHKKKKVRFCFRASCLGFKTEEFGFKQVFLR  110 (488)
Q Consensus        34 ~~~~v~~w~~~lr~~~yd-~eD~--id~~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~cf~~~cs~fped~~i~~~~l~~  110 (488)
                      ....+.+|.+....+.-. +.+.  .++..+.+++.+++           .++.++|.||+| ||+|||||+|.++.++.
T Consensus       368 ~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~~iLklSyd-----------~L~~~lK~CFLy-calFPED~~I~~e~Li~  435 (889)
T KOG4658|consen  368 CKKTVQEWRRALNVLKSSLAADFSGMEESILPILKLSYD-----------NLPEELKSCFLY-CALFPEDYEIKKEKLIE  435 (889)
T ss_pred             CCCcHHHHHHHHccccccccCCCCchhhhhHHhhhccHh-----------hhhHHHHHHHHh-hccCCcccccchHHHHH
Confidence            345577898887765322 3333  45666677777777           457899999999 99999999999999999


Q ss_pred             HHHHHHHHHHH-------HHHHHHHhhhccccccc--------------------------------cccccCCC-CCC-
Q 038150          111 HDIANKIKEMN-------EELHDIATQKDIQNECF--------------------------------SMAINGSE-EPN-  149 (488)
Q Consensus       111 ~~ia~~i~~i~-------~~l~~i~~~~~~~~~~~--------------------------------~~~~~g~~-~~~-  149 (488)
                      +||||||.+-.       +.-.++...-.+..++.                                ...++..+ |.. 
T Consensus       436 yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~  515 (889)
T KOG4658|consen  436 YWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDEGRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSE  515 (889)
T ss_pred             HHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccccceeEEEeeHHHHHHHHHHhccccccccceEEECCcCccc
Confidence            99999963210       00000000000000000                                00111111 111 


Q ss_pred             -CcccccccceeeEEEEecCCcCccccccccCcceecccccch-hhhhhHHHHHhcCCccceeecCCCcccccccCCccc
Q 038150          150 -ATNALDEKVRHLMLIFSKAASLPISTLRVKRMRTLLINDHSL-LNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVP  227 (488)
Q Consensus       150 -~t~~~~~~vr~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~-~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp  227 (488)
                       ....+...+|++++..+....++... .+++|++|.+.+|.. +.. ....+|..++.||||||++|.-     .+   
T Consensus       516 ~~~~~~~~~~rr~s~~~~~~~~~~~~~-~~~~L~tLll~~n~~~l~~-is~~ff~~m~~LrVLDLs~~~~-----l~---  585 (889)
T KOG4658|consen  516 IPQVKSWNSVRRMSLMNNKIEHIAGSS-ENPKLRTLLLQRNSDWLLE-ISGEFFRSLPLLRVLDLSGNSS-----LS---  585 (889)
T ss_pred             cccccchhheeEEEEeccchhhccCCC-CCCccceEEEeecchhhhh-cCHHHHhhCcceEEEECCCCCc-----cC---
Confidence             11245567788888888776666443 567899999999853 444 5666799999999999999873     44   


Q ss_pred             ccccCccCchhhhhhccCcEeecCCCCCcccCchhhccccccceeeccCCCCCCCCCCCCCCcccccccCceeecCCCCC
Q 038150          228 RNIEKLVLPETLCELYNLEKLDISDCFNLKELPEGIGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFHVSAGGGV  307 (488)
Q Consensus       228 ~~i~~l~lp~~i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~  307 (488)
                            ++|++|+.|.+||+|++++ +.+..+|.++++|++|.||++..+.....+|..+..|++|++|.+.......  
T Consensus       586 ------~LP~~I~~Li~LryL~L~~-t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~--  656 (889)
T KOG4658|consen  586 ------KLPSSIGELVHLRYLDLSD-TGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSN--  656 (889)
T ss_pred             ------cCChHHhhhhhhhcccccC-CCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeecccccc--
Confidence                  8999999999999999999 5589999999999999999999988666666666779999999987665222  


Q ss_pred             CCCcccCcccccCCCccccccccc
Q 038150          308 DGRKACRLESLKNLEHLQVCGISR  331 (488)
Q Consensus       308 ~~~~~~~~~~l~~L~~L~~L~~~~  331 (488)
                         ....+.++.+|.+|+.+.+..
T Consensus       657 ---~~~~l~el~~Le~L~~ls~~~  677 (889)
T KOG4658|consen  657 ---DKLLLKELENLEHLENLSITI  677 (889)
T ss_pred             ---chhhHHhhhcccchhhheeec
Confidence               345667778888888877643

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.90  E-value=1.2e-23  Score=231.15  Aligned_cols=262  Identities=19%  Similarity=0.266  Sum_probs=157.1

Q ss_pred             ccccceeeEEEEecC-CcCccccccccCcceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCccccc-cc
Q 038150          154 LDEKVRHLMLIFSKA-ASLPISTLRVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRN-IE  231 (488)
Q Consensus       154 ~~~~vr~l~l~~~~~-~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~-i~  231 (488)
                      ...+|+.+++..+.. ..++..+..+++|++|++++| .+.+..++..+..+++||+|+|++|.+     .+.+|.. +.
T Consensus        67 ~~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n-~~~~~ip~~~~~~l~~L~~L~Ls~n~l-----~~~~p~~~l~  140 (968)
T PLN00113         67 NSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNN-QLSGPIPDDIFTTSSSLRYLNLSNNNF-----TGSIPRGSIP  140 (968)
T ss_pred             CCCcEEEEEecCCCccccCChHHhCCCCCCEEECCCC-ccCCcCChHHhccCCCCCEEECcCCcc-----ccccCccccC
Confidence            345788888887765 455667788999999999987 454313334455888999999998886     4444431 11


Q ss_pred             Cc------------cCchhhhhhccCcEeecCCCCCcccCchhhccccccceeeccCCCCCCCCCCCCCCcccccccCce
Q 038150          232 KL------------VLPETLCELYNLEKLDISDCFNLKELPEGIGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEF  299 (488)
Q Consensus       232 ~l------------~lp~~i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~  299 (488)
                      +|            .+|..++++++|++|++++|.....+|..++++++|++|++++|.....+|..++++++|++|++.
T Consensus       141 ~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~  220 (968)
T PLN00113        141 NLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLG  220 (968)
T ss_pred             CCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECc
Confidence            11            567778888888888888876666777778888888888888877666777777788888888777


Q ss_pred             eecCCCCCCCCcccCcccccCCCcccccccccccCCCChhhhhHhhcccCCCCCceeecccCchhhhhhhccccchHHHh
Q 038150          300 HVSAGGGVDGRKACRLESLKNLEHLQVCGISRLGDVSDVGEAKRLELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLL  379 (488)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~  379 (488)
                      .|...+.       ....+.++++|+.|++....-.    ...+..+.++++|+.|++++|.+.+            .+|
T Consensus       221 ~n~l~~~-------~p~~l~~l~~L~~L~L~~n~l~----~~~p~~l~~l~~L~~L~L~~n~l~~------------~~p  277 (968)
T PLN00113        221 YNNLSGE-------IPYEIGGLTSLNHLDLVYNNLT----GPIPSSLGNLKNLQYLFLYQNKLSG------------PIP  277 (968)
T ss_pred             CCccCCc-------CChhHhcCCCCCEEECcCceec----cccChhHhCCCCCCEEECcCCeeec------------cCc
Confidence            7765431       2233455566666655433211    1123455666666666666665532            223


Q ss_pred             hhCCCCCCCCEEEeccccCCCCCchHHHhccCCcEEeecCCCCCCCCCC-CCCCCCcCeeeecccc
Q 038150          380 EALRPPLNLKELEIEYYRGNTVFPSWMTSLTNLKSLDLSSCENCEQLPP-LGKLQSLENLHIWRME  444 (488)
Q Consensus       380 ~~~~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~-l~~l~~L~~L~l~~~~  444 (488)
                      .++..+++|+.|++++|.+...+|.++..+++|+.|++++|.....+|. ++.+++|+.|++++|.
T Consensus       278 ~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~  343 (968)
T PLN00113        278 PSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNK  343 (968)
T ss_pred             hhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCC
Confidence            3344444444444444444333444444444444444444444333333 4444444444444443

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.89  E-value=2.6e-23  Score=228.61  Aligned_cols=298  Identities=20%  Similarity=0.183  Sum_probs=139.2

Q ss_pred             ccceeeEEEEecC-CcCccccccccCcceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccCcc
Q 038150          156 EKVRHLMLIFSKA-ASLPISTLRVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLV  234 (488)
Q Consensus       156 ~~vr~l~l~~~~~-~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~  234 (488)
                      ..++.+++..+.. ..+|..++++++|++|++.+| .+.. .+|..+.++++|++|+|++|.+     .+         .
T Consensus       140 ~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n-~l~~-~~p~~~~~l~~L~~L~L~~n~l-----~~---------~  203 (968)
T PLN00113        140 PNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGN-VLVG-KIPNSLTNLTSLEFLTLASNQL-----VG---------Q  203 (968)
T ss_pred             CCCCEEECcCCcccccCChHHhcCCCCCEEECccC-cccc-cCChhhhhCcCCCeeeccCCCC-----cC---------c
Confidence            3455555555554 345555666666666666665 3333 4555566666666666666664     44         3


Q ss_pred             CchhhhhhccCcEeecCCCCCcccCchhhccccccceeeccCCCCCCCCCCCCCCcccccccCceeecCCCCCCCC----
Q 038150          235 LPETLCELYNLEKLDISDCFNLKELPEGIGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGR----  310 (488)
Q Consensus       235 lp~~i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~----  310 (488)
                      +|..++++++|++|++++|.....+|..++++++|++|++++|.....+|..++++++|++|++..|.+.+..+..    
T Consensus       204 ~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l  283 (968)
T PLN00113        204 IPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSL  283 (968)
T ss_pred             CChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhc
Confidence            4444555555555555554444445555555555555555555444444444555555555555444433210000    


Q ss_pred             -------------cccCcccccCCCcccccccccccCCCChhhhhHhhcccCCCCCceeecccCchhhhhhhccccchHH
Q 038150          311 -------------KACRLESLKNLEHLQVCGISRLGDVSDVGEAKRLELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQL  377 (488)
Q Consensus       311 -------------~~~~~~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~  377 (488)
                                   .......+.++++|+.|.+....-..    ..+..+..+++|+.|++++|.+.            ..
T Consensus       284 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~----~~~~~~~~l~~L~~L~L~~n~l~------------~~  347 (968)
T PLN00113        284 QKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTG----KIPVALTSLPRLQVLQLWSNKFS------------GE  347 (968)
T ss_pred             cCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCC----cCChhHhcCCCCCEEECcCCCCc------------Cc
Confidence                         00011112233333333332211100    11233444455555555555443            23


Q ss_pred             HhhhCCCCCCCCEEEeccccCCCCCchHHHhccCCcEEeecCCCCCCCCCC-CCCCCCcCeeeecccccceeeCccccCC
Q 038150          378 LLEALRPPLNLKELEIEYYRGNTVFPSWMTSLTNLKSLDLSSCENCEQLPP-LGKLQSLENLHIWRMESVKRVGDEFLGI  456 (488)
Q Consensus       378 ~~~~~~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~-l~~l~~L~~L~l~~~~~l~~~~~~~~~~  456 (488)
                      +|..+..+++|+.|++++|.+...+|.++..+++|+.|++++|.....+|. ++.+++|+.|++++|.....+|..+...
T Consensus       348 ~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l  427 (968)
T PLN00113        348 IPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKL  427 (968)
T ss_pred             CChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcC
Confidence            344444555555555555554433455555555555555555554444444 5555566666665554322333221111


Q ss_pred             CCCCC-------CCCCCCcccccCcccccccccccc
Q 038150          457 ESDHH-------GSSSSSSVIIAFPKLKSLSIEVLR  485 (488)
Q Consensus       457 ~~~~~-------~~~~~~~~~~~~p~L~~L~l~~~p  485 (488)
                      .....       -..........+|+|+.|.+.+|.
T Consensus       428 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~  463 (968)
T PLN00113        428 PLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNK  463 (968)
T ss_pred             CCCCEEECcCCcccCccChhhccCCCCcEEECcCce
Confidence            10000       000001113457888888888764

>PLN03210 Resistant to P

Probab=99.86  E-value=3.9e-21  Score=211.94  Aligned_cols=128  Identities=30%  Similarity=0.368  Sum_probs=95.5

Q ss_pred             ccceeeEEEEecCCcCccccccccCcceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccCccC
Q 038150          156 EKVRHLMLIFSKAASLPISTLRVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVL  235 (488)
Q Consensus       156 ~~vr~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~l  235 (488)
                      ..+|.+.+..+....+|..+ ...+|+.|++.++ .+.  .++..+..+++|++|+|+++..     .+         .+
T Consensus       589 ~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s-~l~--~L~~~~~~l~~Lk~L~Ls~~~~-----l~---------~i  650 (1153)
T PLN03210        589 PKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGS-KLE--KLWDGVHSLTGLRNIDLRGSKN-----LK---------EI  650 (1153)
T ss_pred             cccEEEEecCCCCCCCCCcC-CccCCcEEECcCc-ccc--ccccccccCCCCCEEECCCCCC-----cC---------cC
Confidence            34566666666666777655 5789999999997 555  4566678899999999998864     55         34


Q ss_pred             chhhhhhccCcEeecCCCCCcccCchhhccccccceeeccCCCCCCCCCCCCCCcccccccCceeecC
Q 038150          236 PETLCELYNLEKLDISDCFNLKELPEGIGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFHVSA  303 (488)
Q Consensus       236 p~~i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~  303 (488)
                      | .++.+++|++|++++|..+..+|..++++++|++|++++|.....+|..+ ++++|++|++.+|..
T Consensus       651 p-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~  716 (1153)
T PLN03210        651 P-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSR  716 (1153)
T ss_pred             C-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCC
Confidence            4 36677888888888887778888888888888888888877677777765 677888887776643

syringae 6; Provisional

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.84  E-value=3.1e-23  Score=198.61  Aligned_cols=285  Identities=20%  Similarity=0.185  Sum_probs=157.4

Q ss_pred             ccceeeEEEEecC--CcCccccccccCcceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccCc
Q 038150          156 EKVRHLMLIFSKA--ASLPISTLRVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKL  233 (488)
Q Consensus       156 ~~vr~l~l~~~~~--~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l  233 (488)
                      ..+|.+.+..+..  ..+|..+..+..|.+|+++.| .+.  ..|..+...+++-||+||+|.      +.         
T Consensus        78 p~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShN-qL~--EvP~~LE~AKn~iVLNLS~N~------Ie---------  139 (1255)
T KOG0444|consen   78 PRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHN-QLR--EVPTNLEYAKNSIVLNLSYNN------IE---------  139 (1255)
T ss_pred             hhhHHHhhhccccccCCCCchhcccccceeeecchh-hhh--hcchhhhhhcCcEEEEcccCc------cc---------
Confidence            4445444444444  445666666677777777765 454  355556666777777777776      55         


Q ss_pred             cCchhh-hhhccCcEeecCCCCCcccCchhhccccccceeeccCCCCCCCCCCCCCCcccccccCceeecCCCCCCCCcc
Q 038150          234 VLPETL-CELYNLEKLDISDCFNLKELPEGIGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGRKA  312 (488)
Q Consensus       234 ~lp~~i-~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~  312 (488)
                      .+|.++ -+|..|-+|||+.|. +..+|+.+..|..|++|.+++|.+.-.-...+-.|++|++|++++.+..-      .
T Consensus       140 tIPn~lfinLtDLLfLDLS~Nr-Le~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl------~  212 (1255)
T KOG0444|consen  140 TIPNSLFINLTDLLFLDLSNNR-LEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTL------D  212 (1255)
T ss_pred             cCCchHHHhhHhHhhhccccch-hhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchh------h
Confidence            333333 366667777777744 66677777777777777777766322111234445666666666554432      2


Q ss_pred             cCcccccCCCccccccc--ccccCCCChhhhhHhhcccCCCCCceeecccCchhhhhhhccccchHHHhhhCCCCCCCCE
Q 038150          313 CRLESLKNLEHLQVCGI--SRLGDVSDVGEAKRLELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKE  390 (488)
Q Consensus       313 ~~~~~l~~L~~L~~L~~--~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~  390 (488)
                      .....+..|.+|+.+++  +.+..       ++..+-++.+|+.|.+++|.++..             --..+...+|++
T Consensus       213 N~Ptsld~l~NL~dvDlS~N~Lp~-------vPecly~l~~LrrLNLS~N~iteL-------------~~~~~~W~~lEt  272 (1255)
T KOG0444|consen  213 NIPTSLDDLHNLRDVDLSENNLPI-------VPECLYKLRNLRRLNLSGNKITEL-------------NMTEGEWENLET  272 (1255)
T ss_pred             cCCCchhhhhhhhhccccccCCCc-------chHHHhhhhhhheeccCcCceeee-------------eccHHHHhhhhh
Confidence            23334444555555444  33333       335666778888888888876422             112222345666


Q ss_pred             EEeccccCCCCCchHHHhccCCcEEeecCCCCCC-CCCC-CCCCCCcCeeeecccccceeeCccccCCCCCC------CC
Q 038150          391 LEIEYYRGNTVFPSWMTSLTNLKSLDLSSCENCE-QLPP-LGKLQSLENLHIWRMESVKRVGDEFLGIESDH------HG  462 (488)
Q Consensus       391 L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~-~~~~-l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~------~~  462 (488)
                      |.++.|.++. +|..+..+++|+.|.+.+|...- .+|+ +|+|.+|+.+...++. ++-+|+++..+...+      ..
T Consensus       273 LNlSrNQLt~-LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~-LElVPEglcRC~kL~kL~L~~Nr  350 (1255)
T KOG0444|consen  273 LNLSRNQLTV-LPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNK-LELVPEGLCRCVKLQKLKLDHNR  350 (1255)
T ss_pred             hccccchhcc-chHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccc-cccCchhhhhhHHHHHhcccccc
Confidence            6666666665 66666666666666666555332 2454 5555555555554433 444444322211000      00


Q ss_pred             CCCCCcccccCcccccccccccccC
Q 038150          463 SSSSSSVIIAFPKLKSLSIEVLREL  487 (488)
Q Consensus       463 ~~~~~~~~~~~p~L~~L~l~~~p~L  487 (488)
                      -..-.....-+|.|+.|++++.|+|
T Consensus       351 LiTLPeaIHlL~~l~vLDlreNpnL  375 (1255)
T KOG0444|consen  351 LITLPEAIHLLPDLKVLDLRENPNL  375 (1255)
T ss_pred             eeechhhhhhcCCcceeeccCCcCc
Confidence            0000111345788999999988886

>PLN03210 Resistant to P

Probab=99.80  E-value=4.6e-19  Score=195.58  Aligned_cols=299  Identities=22%  Similarity=0.193  Sum_probs=197.2

Q ss_pred             ccccceeeEEEEecC-------CcCccccccc-cCcceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCc
Q 038150          154 LDEKVRHLMLIFSKA-------ASLPISTLRV-KRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPE  225 (488)
Q Consensus       154 ~~~~vr~l~l~~~~~-------~~~~~~~~~~-~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~  225 (488)
                      ....++.+.+.....       ..+|..+..+ .+||.|.+.++ .+.  .+|..| ...+|++|+++++.      +. 
T Consensus       556 ~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~-~l~--~lP~~f-~~~~L~~L~L~~s~------l~-  624 (1153)
T PLN03210        556 GMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKY-PLR--CMPSNF-RPENLVKLQMQGSK------LE-  624 (1153)
T ss_pred             cCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCC-CCC--CCCCcC-CccCCcEEECcCcc------cc-
Confidence            345666676654421       2345555554 46999999886 444  466655 57899999999998      55 


Q ss_pred             ccccccCccCchhhhhhccCcEeecCCCCCcccCchhhccccccceeeccCCCCCCCCCCCCCCcccccccCceeecCCC
Q 038150          226 VPRNIEKLVLPETLCELYNLEKLDISDCFNLKELPEGIGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFHVSAGG  305 (488)
Q Consensus       226 lp~~i~~l~lp~~i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~  305 (488)
                              .+|..+..+++|++|++++|..+..+| .++.+++|++|++.+|.....+|..++++++|+.|++.+|....
T Consensus       625 --------~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~  695 (1153)
T PLN03210        625 --------KLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLE  695 (1153)
T ss_pred             --------ccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcC
Confidence                    667778889999999999988788887 58899999999999998888999999999999999998875433


Q ss_pred             CCCCCcccCcccccCCCcccccccccccCCCChhhhhHhhcccCCCCCceeecccCchhhhhhhc----------c----
Q 038150          306 GVDGRKACRLESLKNLEHLQVCGISRLGDVSDVGEAKRLELDKKKYLSSLTLWFDKEEEEEGERR----------K----  371 (488)
Q Consensus       306 ~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~----------~----  371 (488)
                      .    .+..+    ++++|+.|.+.++..+....       ....+|+.|+++++.+........          .    
T Consensus       696 ~----Lp~~i----~l~sL~~L~Lsgc~~L~~~p-------~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~  760 (1153)
T PLN03210        696 I----LPTGI----NLKSLYRLNLSGCSRLKSFP-------DISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSE  760 (1153)
T ss_pred             c----cCCcC----CCCCCCEEeCCCCCCccccc-------cccCCcCeeecCCCccccccccccccccccccccccchh
Confidence            2    12221    56677777776654433211       113456666666665422110000          0    


Q ss_pred             ---ccchHHHhhhCCCCCCCCEEEeccccCCCCCchHHHhccCCcEEeecCCCCCCCCCCCCCCCCcCeeeeccccccee
Q 038150          372 ---NEDNQLLLEALRPPLNLKELEIEYYRGNTVFPSWMTSLTNLKSLDLSSCENCEQLPPLGKLQSLENLHIWRMESVKR  448 (488)
Q Consensus       372 ---~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~  448 (488)
                         +......+.....+++|+.|.+++|.....+|.+++.+++|+.|+|++|..++.+|....+++|+.|++++|..+..
T Consensus       761 ~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~  840 (1153)
T PLN03210        761 KLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRT  840 (1153)
T ss_pred             hccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCcccc
Confidence               00000001112234689999999987666689999999999999999999888888755789999999999988776


Q ss_pred             eCccccCCCCCC---CCCCCCCcccccCcccccccccccccC
Q 038150          449 VGDEFLGIESDH---HGSSSSSSVIIAFPKLKSLSIEVLREL  487 (488)
Q Consensus       449 ~~~~~~~~~~~~---~~~~~~~~~~~~~p~L~~L~l~~~p~L  487 (488)
                      +|..........   ..-.......+.+++|+.|.+.+|++|
T Consensus       841 ~p~~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L  882 (1153)
T PLN03210        841 FPDISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNL  882 (1153)
T ss_pred             ccccccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCc
Confidence            653211110000   000111112445667777777666665

syringae 6; Provisional

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.78  E-value=1.2e-18  Score=183.02  Aligned_cols=203  Identities=22%  Similarity=0.235  Sum_probs=142.6

Q ss_pred             hhhhccCcEeecCCCCCcccCchhhccccccceeeccCCCCCCCCCCCCCCcccccccCceeecCCCCCCCCcccCcccc
Q 038150          239 LCELYNLEKLDISDCFNLKELPEGIGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGRKACRLESL  318 (488)
Q Consensus       239 i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l  318 (488)
                      +..++.|++||+++|.....+|..++.|.+||+|+++++. +..+|.++++|+.|.+|++..+....       ......
T Consensus       567 f~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~-I~~LP~~l~~Lk~L~~Lnl~~~~~l~-------~~~~i~  638 (889)
T KOG4658|consen  567 FRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTG-ISHLPSGLGNLKKLIYLNLEVTGRLE-------SIPGIL  638 (889)
T ss_pred             HhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCC-ccccchHHHHHHhhheeccccccccc-------cccchh
Confidence            6679999999999999999999999999999999999998 67899999999999999998775433       112333


Q ss_pred             cCCCcccccccccccCCCChhhhhHhhcccCCCCCceeecccCc---hhhhhh---------hc-cccchHHHhhhCCCC
Q 038150          319 KNLEHLQVCGISRLGDVSDVGEAKRLELDKKKYLSSLTLWFDKE---EEEEGE---------RR-KNEDNQLLLEALRPP  385 (488)
Q Consensus       319 ~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~---~~~~~~---------~~-~~~~~~~~~~~~~~~  385 (488)
                      ..|++|+.|.+....  ..........+.++++|+.+.+.....   ......         .. ........+..+..+
T Consensus       639 ~~L~~Lr~L~l~~s~--~~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l  716 (889)
T KOG4658|consen  639 LELQSLRVLRLPRSA--LSNDKLLLKELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSL  716 (889)
T ss_pred             hhcccccEEEeeccc--cccchhhHHhhhcccchhhheeecchhHhHhhhhhhHHHHHHhHhhhhcccccceeecccccc
Confidence            447777777665433  122233345556777777777754432   000000         00 112223344566778


Q ss_pred             CCCCEEEeccccCCCCCchHH-----Hh-ccCCcEEeecCCCCCCCCCCCCCCCCcCeeeecccccceeeCc
Q 038150          386 LNLKELEIEYYRGNTVFPSWM-----TS-LTNLKSLDLSSCENCEQLPPLGKLQSLENLHIWRMESVKRVGD  451 (488)
Q Consensus       386 ~~L~~L~l~~~~~~~~lp~~~-----~~-l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~  451 (488)
                      .+|+.|.+.+|.+.+....|.     .. |+++..+.+.+|....++.+..-.|+|+.|.+..|..++.+..
T Consensus       717 ~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i~  788 (889)
T KOG4658|consen  717 GNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDIIP  788 (889)
T ss_pred             cCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccchhhccCcccEEEEecccccccCCC
Confidence            899999999988865222221     12 6778888888888888777766679999999999997777643

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.74  E-value=9.6e-20  Score=166.26  Aligned_cols=91  Identities=19%  Similarity=0.228  Sum_probs=59.1

Q ss_pred             HHHhhhCCCCCCCCEEEeccccCCCCCchHHHhccCCcEEeecCCCC----------------------CCCCC-C-CCC
Q 038150          376 QLLLEALRPPLNLKELEIEYYRGNTVFPSWMTSLTNLKSLDLSSCEN----------------------CEQLP-P-LGK  431 (488)
Q Consensus       376 ~~~~~~~~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~----------------------~~~~~-~-l~~  431 (488)
                      ..+|..++.+++|..|++++|.... +|..++.+-.|+.|+|+.|++                      .+.++ . ++.
T Consensus       425 sfv~~~l~~l~kLt~L~L~NN~Ln~-LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~n  503 (565)
T KOG0472|consen  425 SFVPLELSQLQKLTFLDLSNNLLND-LPEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKN  503 (565)
T ss_pred             ccchHHHHhhhcceeeecccchhhh-cchhhhhhhhhheecccccccccchHHHhhHHHHHHHHhccccccccChHHhhh
Confidence            3344455556666666666666665 666666666666666666643                      12222 2 566


Q ss_pred             CCCcCeeeecccccceeeCccccCCCCCCCCCCCCCcccccCcccccccccccc
Q 038150          432 LQSLENLHIWRMESVKRVGDEFLGIESDHHGSSSSSSVIIAFPKLKSLSIEVLR  485 (488)
Q Consensus       432 l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~p  485 (488)
                      +.+|.+|++.++. +..+|.+                 .|.+.+|++|.+++.|
T Consensus       504 m~nL~tLDL~nNd-lq~IPp~-----------------LgnmtnL~hLeL~gNp  539 (565)
T KOG0472|consen  504 MRNLTTLDLQNND-LQQIPPI-----------------LGNMTNLRHLELDGNP  539 (565)
T ss_pred             hhhcceeccCCCc-hhhCChh-----------------hccccceeEEEecCCc
Confidence            7788888886655 7777765                 6678888888888765

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.73  E-value=3.8e-19  Score=170.81  Aligned_cols=243  Identities=23%  Similarity=0.233  Sum_probs=143.9

Q ss_pred             CCCCCcccccccceeeEEEEecCCcCccccccccCcceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCc
Q 038150          146 EEPNATNALDEKVRHLMLIFSKAASLPISTLRVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPE  225 (488)
Q Consensus       146 ~~~~~t~~~~~~vr~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~  225 (488)
                      .|+....+..+.+..++++.+...+.|..+..-+++-+|++++| .+.. ++...|-++.-|-+||||+|.      ...
T Consensus        93 sGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N-~Iet-IPn~lfinLtDLLfLDLS~Nr------Le~  164 (1255)
T KOG0444|consen   93 SGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYN-NIET-IPNSLFINLTDLLFLDLSNNR------LEM  164 (1255)
T ss_pred             CCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccC-cccc-CCchHHHhhHhHhhhccccch------hhh
Confidence            34444445566777888888888888888888888888888887 5554 555567778888888888887      664


Q ss_pred             ccccccCc----------------------------------------cCchhhhhhccCcEeecCCCCCcccCchhhcc
Q 038150          226 VPRNIEKL----------------------------------------VLPETLCELYNLEKLDISDCFNLKELPEGIGK  265 (488)
Q Consensus       226 lp~~i~~l----------------------------------------~lp~~i~~L~~L~~L~l~~~~~~~~lp~~l~~  265 (488)
                      +|..+.+|                                        .+|.++..|.||+.+|++.|+ +..+|..+-+
T Consensus       165 LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~-Lp~vPecly~  243 (1255)
T KOG0444|consen  165 LPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENN-LPIVPECLYK  243 (1255)
T ss_pred             cCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccC-CCcchHHHhh
Confidence            55444333                                        445555555555555555533 4445555555


Q ss_pred             ccccceeeccCCCCCCCCCCCCCCcccccccCceeecCCCCCCCCcccCcccccCCCccccccccc----ccCCCChhhh
Q 038150          266 LINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGRKACRLESLKNLEHLQVCGISR----LGDVSDVGEA  341 (488)
Q Consensus       266 L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~----~~~~~~~~~~  341 (488)
                      +.+|+.|++++|. ++.+--.++.+.+|++|+++.|+...     .|.   .+.+|++|+.|..+.    +++++     
T Consensus       244 l~~LrrLNLS~N~-iteL~~~~~~W~~lEtLNlSrNQLt~-----LP~---avcKL~kL~kLy~n~NkL~FeGiP-----  309 (1255)
T KOG0444|consen  244 LRNLRRLNLSGNK-ITELNMTEGEWENLETLNLSRNQLTV-----LPD---AVCKLTKLTKLYANNNKLTFEGIP-----  309 (1255)
T ss_pred             hhhhheeccCcCc-eeeeeccHHHHhhhhhhccccchhcc-----chH---HHhhhHHHHHHHhccCcccccCCc-----
Confidence            5555555555554 33333334455555555555554433     222   223334444433322    22322     


Q ss_pred             hHhhcccCCCCCceeecccCchhhhhhhccccchHHHhhhCCCCCCCCEEEeccccCCCCCchHHHhccCCcEEeecCCC
Q 038150          342 KRLELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKELEIEYYRGNTVFPSWMTSLTNLKSLDLSSCE  421 (488)
Q Consensus       342 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~  421 (488)
                        ..++++.+|+.+...+|.+             +.+|++++.+..|+.|.|+.|++.+ +|..|.-++.|..|++..|+
T Consensus       310 --SGIGKL~~Levf~aanN~L-------------ElVPEglcRC~kL~kL~L~~NrLiT-LPeaIHlL~~l~vLDlreNp  373 (1255)
T KOG0444|consen  310 --SGIGKLIQLEVFHAANNKL-------------ELVPEGLCRCVKLQKLKLDHNRLIT-LPEAIHLLPDLKVLDLRENP  373 (1255)
T ss_pred             --cchhhhhhhHHHHhhcccc-------------ccCchhhhhhHHHHHhcccccceee-chhhhhhcCCcceeeccCCc
Confidence              4555566666666666654             5556666666666666666666666 66666666666666666666


Q ss_pred             CCCCCC
Q 038150          422 NCEQLP  427 (488)
Q Consensus       422 ~~~~~~  427 (488)
                      .+.-+|
T Consensus       374 nLVMPP  379 (1255)
T KOG0444|consen  374 NLVMPP  379 (1255)
T ss_pred             CccCCC
Confidence            655544

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.68  E-value=9.9e-18  Score=160.03  Aligned_cols=280  Identities=19%  Similarity=0.232  Sum_probs=166.7

Q ss_pred             cccccceeeEEEEecCCcCccccccccCcceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccC
Q 038150          153 ALDEKVRHLMLIFSKAASLPISTLRVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEK  232 (488)
Q Consensus       153 ~~~~~vr~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~  232 (488)
                      ++..+++.+++..+....+|.......+|..|++.+| .+.. .-.+.+..++.||+||||.|.      +..+|..   
T Consensus        99 ~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N-~I~s-v~se~L~~l~alrslDLSrN~------is~i~~~---  167 (873)
T KOG4194|consen   99 YNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHN-LISS-VTSEELSALPALRSLDLSRNL------ISEIPKP---  167 (873)
T ss_pred             hcCCcceeeeeccchhhhcccccccccceeEEeeecc-cccc-ccHHHHHhHhhhhhhhhhhch------hhcccCC---
Confidence            5566667777777777777766556667788888776 4444 445567778888888888887      5544432   


Q ss_pred             ccCchhhhhhccCcEeecCCCCCcccCc-hhhccccccceeeccCCCCCCCCC-CCCCCcccccccCceeecCCCCCCCC
Q 038150          233 LVLPETLCELYNLEKLDISDCFNLKELP-EGIGKLINVKHLLNRGTNSLRYMP-VGIGRLTGLRTLGEFHVSAGGGVDGR  310 (488)
Q Consensus       233 l~lp~~i~~L~~L~~L~l~~~~~~~~lp-~~l~~L~~L~~L~l~~~~~~~~lp-~~i~~L~~L~~L~l~~~~~~~~~~~~  310 (488)
                       .+|    .=.++++|+|++|. ++.+- ..+..+.+|-.|.++.|. +..+| ..+.+|+.|+.|++..|.+.-.    
T Consensus       168 -sfp----~~~ni~~L~La~N~-It~l~~~~F~~lnsL~tlkLsrNr-ittLp~r~Fk~L~~L~~LdLnrN~iriv----  236 (873)
T KOG4194|consen  168 -SFP----AKVNIKKLNLASNR-ITTLETGHFDSLNSLLTLKLSRNR-ITTLPQRSFKRLPKLESLDLNRNRIRIV----  236 (873)
T ss_pred             -CCC----CCCCceEEeecccc-ccccccccccccchheeeecccCc-ccccCHHHhhhcchhhhhhccccceeee----
Confidence             222    22456666666654 33332 245556666666666666 33444 3355566666666655543320    


Q ss_pred             cccCcccccCCCccccccc--ccccCCCC------------------hhhhhHhhcccCCCCCceeecccCchhhhhhhc
Q 038150          311 KACRLESLKNLEHLQVCGI--SRLGDVSD------------------VGEAKRLELDKKKYLSSLTLWFDKEEEEEGERR  370 (488)
Q Consensus       311 ~~~~~~~l~~L~~L~~L~~--~~~~~~~~------------------~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~  370 (488)
                      .......+   ++|+.|.+  +.+..+.+                  .......++-+++.|+.|++++|.+.       
T Consensus       237 e~ltFqgL---~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~-------  306 (873)
T KOG4194|consen  237 EGLTFQGL---PSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQ-------  306 (873)
T ss_pred             hhhhhcCc---hhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhh-------
Confidence            01111222   22222211  11111110                  01111245566777888888888764       


Q ss_pred             cccchHHHhhhCCCCCCCCEEEeccccCCCCCchHHHhccCCcEEeecCCCCCCCCCC--CCCCCCcCeeeeccccccee
Q 038150          371 KNEDNQLLLEALRPPLNLKELEIEYYRGNTVFPSWMTSLTNLKSLDLSSCENCEQLPP--LGKLQSLENLHIWRMESVKR  448 (488)
Q Consensus       371 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~--l~~l~~L~~L~l~~~~~l~~  448 (488)
                           .--++.|...+.|+.|+|+.|.+.+.-+..+..+..|+.|.+++|.. +.+..  +..+.+|++|+++++..--.
T Consensus       307 -----rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi-~~l~e~af~~lssL~~LdLr~N~ls~~  380 (873)
T KOG4194|consen  307 -----RIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSI-DHLAEGAFVGLSSLHKLDLRSNELSWC  380 (873)
T ss_pred             -----eeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccch-HHHHhhHHHHhhhhhhhcCcCCeEEEE
Confidence                 33456777788888888888888884466777888888888888873 33332  66788999999988873222


Q ss_pred             eCccccCCCCCCCCCCCCCcccccCccccccccccc
Q 038150          449 VGDEFLGIESDHHGSSSSSSVIIAFPKLKSLSIEVL  484 (488)
Q Consensus       449 ~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~  484 (488)
                      +.+....              ..++|+|++|.+.+.
T Consensus       381 IEDaa~~--------------f~gl~~LrkL~l~gN  402 (873)
T KOG4194|consen  381 IEDAAVA--------------FNGLPSLRKLRLTGN  402 (873)
T ss_pred             Eecchhh--------------hccchhhhheeecCc
Confidence            3222111              346999999998763

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.66  E-value=3.1e-18  Score=171.67  Aligned_cols=213  Identities=24%  Similarity=0.246  Sum_probs=149.5

Q ss_pred             cCchhhhhhccCcEeecCCCCCcccCchhhccccccceeeccCCCCCCCCCCCCCCcccccccCceeecCCCCCCCCccc
Q 038150          234 VLPETLCELYNLEKLDISDCFNLKELPEGIGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGRKAC  313 (488)
Q Consensus       234 ~lp~~i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~~  313 (488)
                      .+|+.++.+.+|+.+++.+|. +..+|..+..+++|+.|.+..|. ...+|...+++++|++|++..|.+..     .+.
T Consensus       255 ~lp~wi~~~~nle~l~~n~N~-l~~lp~ri~~~~~L~~l~~~~ne-l~yip~~le~~~sL~tLdL~~N~L~~-----lp~  327 (1081)
T KOG0618|consen  255 NLPEWIGACANLEALNANHNR-LVALPLRISRITSLVSLSAAYNE-LEYIPPFLEGLKSLRTLDLQSNNLPS-----LPD  327 (1081)
T ss_pred             cchHHHHhcccceEecccchh-HHhhHHHHhhhhhHHHHHhhhhh-hhhCCCcccccceeeeeeehhccccc-----cch
Confidence            678888888888888888865 57888888888888888888888 67788888889999999998887655     222


Q ss_pred             CcccccCCCc-cccccccc--ccCCC------------------ChhhhhHhhcccCCCCCceeecccCchhhhhhhccc
Q 038150          314 RLESLKNLEH-LQVCGISR--LGDVS------------------DVGEAKRLELDKKKYLSSLTLWFDKEEEEEGERRKN  372 (488)
Q Consensus       314 ~~~~l~~L~~-L~~L~~~~--~~~~~------------------~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~  372 (488)
                      ...  ..+.. |+.+....  .+..+                  ...+.....+.+.++|+.|++++|++          
T Consensus       328 ~~l--~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL----------  395 (1081)
T KOG0618|consen  328 NFL--AVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRL----------  395 (1081)
T ss_pred             HHH--hhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeeccccc----------
Confidence            111  11100 12111110  00000                  01223445677889999999999987          


Q ss_pred             cchHHHhh-hCCCCCCCCEEEeccccCCCCCchHHHhccCCcEEeecCCCCCCCCCCCCCCCCcCeeeecccccceeeCc
Q 038150          373 EDNQLLLE-ALRPPLNLKELEIEYYRGNTVFPSWMTSLTNLKSLDLSSCENCEQLPPLGKLQSLENLHIWRMESVKRVGD  451 (488)
Q Consensus       373 ~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~  451 (488)
                         ..+|+ .+.++..|+.|.|+||.+.+ +|..+..++.|+.|...+|. +..+|.+..++.|+.++++.|. ++.+..
T Consensus       396 ---~~fpas~~~kle~LeeL~LSGNkL~~-Lp~tva~~~~L~tL~ahsN~-l~~fPe~~~l~qL~~lDlS~N~-L~~~~l  469 (1081)
T KOG0618|consen  396 ---NSFPASKLRKLEELEELNLSGNKLTT-LPDTVANLGRLHTLRAHSNQ-LLSFPELAQLPQLKVLDLSCNN-LSEVTL  469 (1081)
T ss_pred             ---ccCCHHHHhchHHhHHHhcccchhhh-hhHHHHhhhhhHHHhhcCCc-eeechhhhhcCcceEEecccch-hhhhhh
Confidence               33443 46678889999999999998 99988889999988877766 5567788889999999997654 655532


Q ss_pred             cccCCCCCCCCCCCCCcccccCcccccccccccccC
Q 038150          452 EFLGIESDHHGSSSSSSVIIAFPKLKSLSIEVLREL  487 (488)
Q Consensus       452 ~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~p~L  487 (488)
                      ..                .-.-|+||+|++.|.+++
T Consensus       470 ~~----------------~~p~p~LkyLdlSGN~~l  489 (1081)
T KOG0618|consen  470 PE----------------ALPSPNLKYLDLSGNTRL  489 (1081)
T ss_pred             hh----------------hCCCcccceeeccCCccc
Confidence            21                111279999999988754

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.64  E-value=2.6e-17  Score=157.19  Aligned_cols=272  Identities=17%  Similarity=0.163  Sum_probs=166.0

Q ss_pred             cccceeeEEEEecCCcCc-cccccccCcceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccCc
Q 038150          155 DEKVRHLMLIFSKAASLP-ISTLRVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKL  233 (488)
Q Consensus       155 ~~~vr~l~l~~~~~~~~~-~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l  233 (488)
                      ...+.++.+..+.+.++. ..+..++.||+|+++.| .+.. .....|..-.++++|+|++|.      ++.+-.     
T Consensus       124 sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN-~is~-i~~~sfp~~~ni~~L~La~N~------It~l~~-----  190 (873)
T KOG4194|consen  124 SGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRN-LISE-IPKPSFPAKVNIKKLNLASNR------ITTLET-----  190 (873)
T ss_pred             ccceeEEeeeccccccccHHHHHhHhhhhhhhhhhc-hhhc-ccCCCCCCCCCceEEeecccc------cccccc-----
Confidence            345677777777665553 23555677777777776 4443 333335555667777777776      332211     


Q ss_pred             cCchhhhhhccCcEeecCCCCCcccCchh-hccccccceeeccCCCC-----------------------CCCCCCC-CC
Q 038150          234 VLPETLCELYNLEKLDISDCFNLKELPEG-IGKLINVKHLLNRGTNS-----------------------LRYMPVG-IG  288 (488)
Q Consensus       234 ~lp~~i~~L~~L~~L~l~~~~~~~~lp~~-l~~L~~L~~L~l~~~~~-----------------------~~~lp~~-i~  288 (488)
                         ..+..|.+|-+|.|+.|. ++.+|.. +.+|++|+.|++..|.+                       +..+-++ +-
T Consensus       191 ---~~F~~lnsL~tlkLsrNr-ittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy  266 (873)
T KOG4194|consen  191 ---GHFDSLNSLLTLKLSRNR-ITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFY  266 (873)
T ss_pred             ---ccccccchheeeecccCc-ccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCccee
Confidence               223344455555555533 4444432 33355555555555442                       2222222 33


Q ss_pred             CcccccccCceeecCCCCCCCCcccCcccccCCCccccccccc--ccCCCChhhhhHhhcccCCCCCceeecccCchhhh
Q 038150          289 RLTGLRTLGEFHVSAGGGVDGRKACRLESLKNLEHLQVCGISR--LGDVSDVGEAKRLELDKKKYLSSLTLWFDKEEEEE  366 (488)
Q Consensus       289 ~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~--~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~  366 (488)
                      .|.++++|++..|+...       -.-+-+-+|+.|+.|+++.  ++.+.      ...+..+++|+.|++++|+++   
T Consensus       267 ~l~kme~l~L~~N~l~~-------vn~g~lfgLt~L~~L~lS~NaI~rih------~d~WsftqkL~~LdLs~N~i~---  330 (873)
T KOG4194|consen  267 GLEKMEHLNLETNRLQA-------VNEGWLFGLTSLEQLDLSYNAIQRIH------IDSWSFTQKLKELDLSSNRIT---  330 (873)
T ss_pred             eecccceeecccchhhh-------hhcccccccchhhhhccchhhhheee------cchhhhcccceeEeccccccc---
Confidence            44455555554444332       0112233455555555432  22222      356677899999999999985   


Q ss_pred             hhhccccchHHHhhhCCCCCCCCEEEeccccCCCCCchHHHhccCCcEEeecCCCCCCCCC----CCCCCCCcCeeeecc
Q 038150          367 GERRKNEDNQLLLEALRPPLNLKELEIEYYRGNTVFPSWMTSLTNLKSLDLSSCENCEQLP----PLGKLQSLENLHIWR  442 (488)
Q Consensus       367 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~----~l~~l~~L~~L~l~~  442 (488)
                               +.-++++..+..|++|.|+.|.+...--..+..+++|+.|++.+|.....+.    .+..+|+|+.|.+.+
T Consensus       331 ---------~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~g  401 (873)
T KOG4194|consen  331 ---------RLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTG  401 (873)
T ss_pred             ---------cCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecC
Confidence                     3334567778899999999998876223456689999999999998654332    256699999999998


Q ss_pred             cccceeeCccccCCCCCCCCCCCCCcccccCcccccccccccc
Q 038150          443 MESVKRVGDEFLGIESDHHGSSSSSSVIIAFPKLKSLSIEVLR  485 (488)
Q Consensus       443 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~p  485 (488)
                      +. ++.++...+                .+|+.|+.|++.+.+
T Consensus       402 Nq-lk~I~krAf----------------sgl~~LE~LdL~~Na  427 (873)
T KOG4194|consen  402 NQ-LKSIPKRAF----------------SGLEALEHLDLGDNA  427 (873)
T ss_pred             ce-eeecchhhh----------------ccCcccceecCCCCc
Confidence            87 999986542                368999999988754

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.63  E-value=5.7e-18  Score=154.80  Aligned_cols=240  Identities=22%  Similarity=0.209  Sum_probs=156.0

Q ss_pred             ccceeeEEEEecCCcCccccccccCcceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccCccC
Q 038150          156 EKVRHLMLIFSKAASLPISTLRVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVL  235 (488)
Q Consensus       156 ~~vr~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~l  235 (488)
                      ..+..+.+..+...+.|+.++.+..+..|+.+.| .+.  .+|+.+.++..|+.|+.++|.      ..         .+
T Consensus        68 ~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n-~ls--~lp~~i~s~~~l~~l~~s~n~------~~---------el  129 (565)
T KOG0472|consen   68 ACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHN-KLS--ELPEQIGSLISLVKLDCSSNE------LK---------EL  129 (565)
T ss_pred             cceeEEEeccchhhhCCHHHHHHHHHHHhhcccc-hHh--hccHHHhhhhhhhhhhccccc------ee---------ec
Confidence            3444667777777888888888888899988887 454  477778889999999999988      45         55


Q ss_pred             chhhhhhccCcEeecCCCCCcccCchhhccccccceeeccCCCCCCCCCCCCCCcccccccCceeecCCCCCCCCcccCc
Q 038150          236 PETLCELYNLEKLDISDCFNLKELPEGIGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGRKACRL  315 (488)
Q Consensus       236 p~~i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~  315 (488)
                      |++|+.+..|..|+..+|. +..+|.+++++.+|..|++.+|. ...+|+..-+|+.|++|+...|....        ..
T Consensus       130 ~~~i~~~~~l~dl~~~~N~-i~slp~~~~~~~~l~~l~~~~n~-l~~l~~~~i~m~~L~~ld~~~N~L~t--------lP  199 (565)
T KOG0472|consen  130 PDSIGRLLDLEDLDATNNQ-ISSLPEDMVNLSKLSKLDLEGNK-LKALPENHIAMKRLKHLDCNSNLLET--------LP  199 (565)
T ss_pred             CchHHHHhhhhhhhccccc-cccCchHHHHHHHHHHhhccccc-hhhCCHHHHHHHHHHhcccchhhhhc--------CC
Confidence            6666666666666666643 56666666666666666666665 34444444346666666655554332        23


Q ss_pred             ccccCCCcccccccccccCCCChhhhhHhhcccCCCCCceeecccCchhhhhhhccccchHHHhhhCC-CCCCCCEEEec
Q 038150          316 ESLKNLEHLQVCGISRLGDVSDVGEAKRLELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALR-PPLNLKELEIE  394 (488)
Q Consensus       316 ~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~L~~L~l~  394 (488)
                      .+++.+.+|..|.+....-.      +...+.++..|..|+++.|.+             ..+|.... .+++|..|++.
T Consensus       200 ~~lg~l~~L~~LyL~~Nki~------~lPef~gcs~L~Elh~g~N~i-------------~~lpae~~~~L~~l~vLDLR  260 (565)
T KOG0472|consen  200 PELGGLESLELLYLRRNKIR------FLPEFPGCSLLKELHVGENQI-------------EMLPAEHLKHLNSLLVLDLR  260 (565)
T ss_pred             hhhcchhhhHHHHhhhcccc------cCCCCCccHHHHHHHhcccHH-------------HhhHHHHhcccccceeeecc
Confidence            34444444544444322110      012455666677777777765             44454443 67777777777


Q ss_pred             cccCCCCCchHHHhccCCcEEeecCCCCCCCCCCCCCCCCcCeeeecccc
Q 038150          395 YYRGNTVFPSWMTSLTNLKSLDLSSCENCEQLPPLGKLQSLENLHIWRME  444 (488)
Q Consensus       395 ~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~  444 (488)
                      .|.+.+ +|..+..+.+|.+|++++|.+..-.+.+|++ .|+.|.+.+++
T Consensus       261 dNklke-~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNP  308 (565)
T KOG0472|consen  261 DNKLKE-VPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNP  308 (565)
T ss_pred             cccccc-CchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCc
Confidence            777777 7777777777888888777755544457777 77777777776

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.56  E-value=6e-16  Score=148.58  Aligned_cols=281  Identities=19%  Similarity=0.144  Sum_probs=179.4

Q ss_pred             ccccccccCcceecccccchhhh---hhHHHHHhcCCccceeecCCCcccccccCCcccccccCccCchhhhhhccCcEe
Q 038150          172 PISTLRVKRMRTLLINDHSLLNA---AILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVLPETLCELYNLEKL  248 (488)
Q Consensus       172 ~~~~~~~~~Lr~L~l~~~~~~~~---~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~lp~~i~~L~~L~~L  248 (488)
                      ...+..+.+|+.|.+.++ .+..   ..++..+...+.++.|+++++.      .+..+..+.  .++..+..+++|+.|
T Consensus        16 ~~~~~~l~~L~~l~l~~~-~l~~~~~~~i~~~l~~~~~l~~l~l~~~~------~~~~~~~~~--~~~~~l~~~~~L~~L   86 (319)
T cd00116          16 TELLPKLLCLQVLRLEGN-TLGEEAAKALASALRPQPSLKELCLSLNE------TGRIPRGLQ--SLLQGLTKGCGLQEL   86 (319)
T ss_pred             HHHHHHHhhccEEeecCC-CCcHHHHHHHHHHHhhCCCceEEeccccc------cCCcchHHH--HHHHHHHhcCceeEE
Confidence            344556677899999887 3321   1355667778889999998887      332222211  355667778899999


Q ss_pred             ecCCCCCcccCchhhccccc---cceeeccCCCCCC----CCCCCCCCc-ccccccCceeecCCCCCCCCcccCcccccC
Q 038150          249 DISDCFNLKELPEGIGKLIN---VKHLLNRGTNSLR----YMPVGIGRL-TGLRTLGEFHVSAGGGVDGRKACRLESLKN  320 (488)
Q Consensus       249 ~l~~~~~~~~lp~~l~~L~~---L~~L~l~~~~~~~----~lp~~i~~L-~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~  320 (488)
                      ++++|......+..+..+.+   |++|++++|....    .+...+..+ ++|+.|++.+|.+.+..   .......+..
T Consensus        87 ~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~---~~~~~~~~~~  163 (319)
T cd00116          87 DLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGAS---CEALAKALRA  163 (319)
T ss_pred             EccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchH---HHHHHHHHHh
Confidence            99998765556666666655   9999999887441    222345566 88899999888766411   1122334556


Q ss_pred             CCcccccccccccCCCChhhhhHhhcccCCCCCceeecccCchhhhhhhccccchHHHhhhCCCCCCCCEEEeccccCCC
Q 038150          321 LEHLQVCGISRLGDVSDVGEAKRLELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKELEIEYYRGNT  400 (488)
Q Consensus       321 L~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  400 (488)
                      +++|+.|.+....-.......+...+..+++|+.|++++|.+....        ...+...+..+++|+.|++++|.+..
T Consensus       164 ~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~--------~~~l~~~~~~~~~L~~L~ls~n~l~~  235 (319)
T cd00116         164 NRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEG--------ASALAETLASLKSLEVLNLGDNNLTD  235 (319)
T ss_pred             CCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHH--------HHHHHHHhcccCCCCEEecCCCcCch
Confidence            6677777775543222222334455666789999999999875332        24566677788999999999987764


Q ss_pred             CCchHHH-h----ccCCcEEeecCCCCCC----CCCC-CCCCCCcCeeeecccccceeeCccccCCCCCCCCCCCCCccc
Q 038150          401 VFPSWMT-S----LTNLKSLDLSSCENCE----QLPP-LGKLQSLENLHIWRMESVKRVGDEFLGIESDHHGSSSSSSVI  470 (488)
Q Consensus       401 ~lp~~~~-~----l~~L~~L~l~~~~~~~----~~~~-l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  470 (488)
                      .-+..+. .    .+.|++|++++|....    .+.. +..+++|+++++++|. +...+...+...            .
T Consensus       236 ~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~-l~~~~~~~~~~~------------~  302 (319)
T cd00116         236 AGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNK-FGEEGAQLLAES------------L  302 (319)
T ss_pred             HHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCC-CcHHHHHHHHHH------------H
Confidence            1222222 2    3799999999997652    1222 5566899999998887 333322211111            3


Q ss_pred             ccC-cccccccccccc
Q 038150          471 IAF-PKLKSLSIEVLR  485 (488)
Q Consensus       471 ~~~-p~L~~L~l~~~p  485 (488)
                      ..+ +.|++|++.+-|
T Consensus       303 ~~~~~~~~~~~~~~~~  318 (319)
T cd00116         303 LEPGNELESLWVKDDS  318 (319)
T ss_pred             hhcCCchhhcccCCCC
Confidence            345 788888876643

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.55  E-value=1.5e-16  Score=129.04  Aligned_cols=165  Identities=22%  Similarity=0.246  Sum_probs=125.2

Q ss_pred             hcCCccceeecCCCcccccccCCcccccccCccCchhhhhhccCcEeecCCCCCcccCchhhccccccceeeccCCCCCC
Q 038150          202 RELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVLPETLCELYNLEKLDISDCFNLKELPEGIGKLINVKHLLNRGTNSLR  281 (488)
Q Consensus       202 ~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~lp~~i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~L~l~~~~~~~  281 (488)
                      -.+.++.-|-||+|.      +.         .+|..|..|.+|+.|++.+|. ++++|..++.|++|++|++.-|+ ..
T Consensus        30 f~~s~ITrLtLSHNK------l~---------~vppnia~l~nlevln~~nnq-ie~lp~~issl~klr~lnvgmnr-l~   92 (264)
T KOG0617|consen   30 FNMSNITRLTLSHNK------LT---------VVPPNIAELKNLEVLNLSNNQ-IEELPTSISSLPKLRILNVGMNR-LN   92 (264)
T ss_pred             cchhhhhhhhcccCc------ee---------ecCCcHHHhhhhhhhhcccch-hhhcChhhhhchhhhheecchhh-hh
Confidence            345667777888888      44         677888889999999998854 88899999999999999998887 67


Q ss_pred             CCCCCCCCcccccccCceeecCCCCCCCCcccCcccccCCCcccccccccccCCCChhhhhHhhcccCCCCCceeecccC
Q 038150          282 YMPVGIGRLTGLRTLGEFHVSAGGGVDGRKACRLESLKNLEHLQVCGISRLGDVSDVGEAKRLELDKKKYLSSLTLWFDK  361 (488)
Q Consensus       282 ~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~  361 (488)
                      .+|.++|.++-|+.|++..|......      .                            +..+-.++.|+-|+++.|.
T Consensus        93 ~lprgfgs~p~levldltynnl~e~~------l----------------------------pgnff~m~tlralyl~dnd  138 (264)
T KOG0617|consen   93 ILPRGFGSFPALEVLDLTYNNLNENS------L----------------------------PGNFFYMTTLRALYLGDND  138 (264)
T ss_pred             cCccccCCCchhhhhhcccccccccc------C----------------------------CcchhHHHHHHHHHhcCCC
Confidence            78899999999999998877654310      0                            0111223456667777776


Q ss_pred             chhhhhhhccccchHHHhhhCCCCCCCCEEEeccccCCCCCchHHHhccCCcEEeecCCCCCCCCCCCCC
Q 038150          362 EEEEEGERRKNEDNQLLLEALRPPLNLKELEIEYYRGNTVFPSWMTSLTNLKSLDLSSCENCEQLPPLGK  431 (488)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~l~~  431 (488)
                      +             +.+|..++.+++|+.|.+..|...+ +|..++.+..|+.|.|.+|+...-.|.++.
T Consensus       139 f-------------e~lp~dvg~lt~lqil~lrdndll~-lpkeig~lt~lrelhiqgnrl~vlppel~~  194 (264)
T KOG0617|consen  139 F-------------EILPPDVGKLTNLQILSLRDNDLLS-LPKEIGDLTRLRELHIQGNRLTVLPPELAN  194 (264)
T ss_pred             c-------------ccCChhhhhhcceeEEeeccCchhh-CcHHHHHHHHHHHHhcccceeeecChhhhh
Confidence            5             6778888889999999998888887 899999999999999998885444444544

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.50  E-value=4e-14  Score=147.04  Aligned_cols=221  Identities=19%  Similarity=0.231  Sum_probs=122.7

Q ss_pred             ccceeeEEEEecCCcCccccccccCcceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccCccC
Q 038150          156 EKVRHLMLIFSKAASLPISTLRVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVL  235 (488)
Q Consensus       156 ~~vr~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~l  235 (488)
                      ..++.+.+..+....+|..+.  ++|++|++.+| .+.  .+|..+.  .+|+.|+|++|.      +.         .+
T Consensus       199 ~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N-~Lt--sLP~~l~--~~L~~L~Ls~N~------L~---------~L  256 (754)
T PRK15370        199 EQITTLILDNNELKSLPENLQ--GNIKTLYANSN-QLT--SIPATLP--DTIQEMELSINR------IT---------EL  256 (754)
T ss_pred             cCCcEEEecCCCCCcCChhhc--cCCCEEECCCC-ccc--cCChhhh--ccccEEECcCCc------cC---------cC
Confidence            456667776666666665442  46777777765 344  2343332  357777777776      44         33


Q ss_pred             chhhhhhccCcEeecCCCCCcccCchhhccccccceeeccCCCCCCCCCCCCCCcccccccCceeecCCCCCCCCcccCc
Q 038150          236 PETLCELYNLEKLDISDCFNLKELPEGIGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGRKACRL  315 (488)
Q Consensus       236 p~~i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~  315 (488)
                      |..+.  .+|++|++++|. +..+|..+.  .+|++|++++|. ...+|..+.  ++|+.|++.+|.+..     .+..+
T Consensus       257 P~~l~--s~L~~L~Ls~N~-L~~LP~~l~--~sL~~L~Ls~N~-Lt~LP~~lp--~sL~~L~Ls~N~Lt~-----LP~~l  323 (754)
T PRK15370        257 PERLP--SALQSLDLFHNK-ISCLPENLP--EELRYLSVYDNS-IRTLPAHLP--SGITHLNVQSNSLTA-----LPETL  323 (754)
T ss_pred             ChhHh--CCCCEEECcCCc-cCccccccC--CCCcEEECCCCc-cccCcccch--hhHHHHHhcCCcccc-----CCccc
Confidence            43332  367777777654 556665553  467777777776 344554432  466777776665543     12111


Q ss_pred             ccccCCCcccccccccc--cCCCChhhhhHhhcccCCCCCceeecccCchhhhhhhccccchHHHhhhCCCCCCCCEEEe
Q 038150          316 ESLKNLEHLQVCGISRL--GDVSDVGEAKRLELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKELEI  393 (488)
Q Consensus       316 ~~l~~L~~L~~L~~~~~--~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l  393 (488)
                           .++|+.|.+...  ..++       ..+  .++|+.|++++|.+.             .+|..+  +++|+.|+|
T Consensus       324 -----~~sL~~L~Ls~N~Lt~LP-------~~l--~~sL~~L~Ls~N~L~-------------~LP~~l--p~~L~~LdL  374 (754)
T PRK15370        324 -----PPGLKTLEAGENALTSLP-------ASL--PPELQVLDVSKNQIT-------------VLPETL--PPTITTLDV  374 (754)
T ss_pred             -----cccceeccccCCccccCC-------hhh--cCcccEEECCCCCCC-------------cCChhh--cCCcCEEEC
Confidence                 134444444332  2222       111  256777777777653             233333  246777777


Q ss_pred             ccccCCCCCchHHHhccCCcEEeecCCCCCCCCCC-----CCCCCCcCeeeecccc
Q 038150          394 EYYRGNTVFPSWMTSLTNLKSLDLSSCENCEQLPP-----LGKLQSLENLHIWRME  444 (488)
Q Consensus       394 ~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~-----l~~l~~L~~L~l~~~~  444 (488)
                      ++|.+.. +|..+.  .+|+.|++++|.+. .+|.     .+.+|.+..|.+.+|+
T Consensus       375 s~N~Lt~-LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Np  426 (754)
T PRK15370        375 SRNALTN-LPENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNP  426 (754)
T ss_pred             CCCcCCC-CCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCC
Confidence            7777665 666543  35777777776643 3442     2334667777777665

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.46  E-value=6.4e-15  Score=141.45  Aligned_cols=267  Identities=20%  Similarity=0.130  Sum_probs=177.4

Q ss_pred             ecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccCccCchhhhhhccCcEeecCCCCCc------c
Q 038150          184 LLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVLPETLCELYNLEKLDISDCFNL------K  257 (488)
Q Consensus       184 L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~lp~~i~~L~~L~~L~l~~~~~~------~  257 (488)
                      |++.++ .+....+...+..+.+|++|+++++.+     ...-..     .++..+...++|++|+++++...      .
T Consensus         3 l~L~~~-~l~~~~~~~~~~~l~~L~~l~l~~~~l-----~~~~~~-----~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~   71 (319)
T cd00116           3 LSLKGE-LLKTERATELLPKLLCLQVLRLEGNTL-----GEEAAK-----ALASALRPQPSLKELCLSLNETGRIPRGLQ   71 (319)
T ss_pred             cccccC-cccccchHHHHHHHhhccEEeecCCCC-----cHHHHH-----HHHHHHhhCCCceEEeccccccCCcchHHH
Confidence            555554 343225667788888899999999984     211000     45667778888999999997543      1


Q ss_pred             cCchhhccccccceeeccCCCCCCCCCCCCCCccc---ccccCceeecCCCCCCCCcccCcccccCC-Cccccccccccc
Q 038150          258 ELPEGIGKLINVKHLLNRGTNSLRYMPVGIGRLTG---LRTLGEFHVSAGGGVDGRKACRLESLKNL-EHLQVCGISRLG  333 (488)
Q Consensus       258 ~lp~~l~~L~~L~~L~l~~~~~~~~lp~~i~~L~~---L~~L~l~~~~~~~~~~~~~~~~~~~l~~L-~~L~~L~~~~~~  333 (488)
                      .++..+..+++|++|++++|.+....+..+..+.+   |++|++.+|...+..   .......+..+ ++|+.+.+..+.
T Consensus        72 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~---~~~l~~~l~~~~~~L~~L~L~~n~  148 (319)
T cd00116          72 SLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRG---LRLLAKGLKDLPPALEKLVLGRNR  148 (319)
T ss_pred             HHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHH---HHHHHHHHHhCCCCceEEEcCCCc
Confidence            24456778899999999999865555555555554   999999988765311   12222345566 788888887665


Q ss_pred             CCCChhhhhHhhcccCCCCCceeecccCchhhhhhhccccchHHHhhhCCCCCCCCEEEeccccCCCC----CchHHHhc
Q 038150          334 DVSDVGEAKRLELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKELEIEYYRGNTV----FPSWMTSL  409 (488)
Q Consensus       334 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~----lp~~~~~l  409 (488)
                      -.......+...+..+++|+.|++++|.+.+..        ...++..+...++|+.|++++|.+...    ++..+..+
T Consensus       149 l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~--------~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~  220 (319)
T cd00116         149 LEGASCEALAKALRANRDLKELNLANNGIGDAG--------IRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASL  220 (319)
T ss_pred             CCchHHHHHHHHHHhCCCcCEEECcCCCCchHH--------HHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhccc
Confidence            433334455667778899999999999876321        144555666678999999999987641    33445578


Q ss_pred             cCCcEEeecCCCCCCC-CCCC-----CCCCCcCeeeecccccceeeCccccCCCCCCCCCCCCCcccccCcccccccccc
Q 038150          410 TNLKSLDLSSCENCEQ-LPPL-----GKLQSLENLHIWRMESVKRVGDEFLGIESDHHGSSSSSSVIIAFPKLKSLSIEV  483 (488)
Q Consensus       410 ~~L~~L~l~~~~~~~~-~~~l-----~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~  483 (488)
                      ++|++|++++|..... +..+     ...+.|++|++.+|. ++..+...+...            ...+++|+.+++.+
T Consensus       221 ~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~-i~~~~~~~l~~~------------~~~~~~L~~l~l~~  287 (319)
T cd00116         221 KSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCND-ITDDGAKDLAEV------------LAEKESLLELDLRG  287 (319)
T ss_pred             CCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCC-CCcHHHHHHHHH------------HhcCCCccEEECCC
Confidence            8999999999985541 1111     135899999999986 332111111011            34567899988876


Q ss_pred             cc
Q 038150          484 LR  485 (488)
Q Consensus       484 ~p  485 (488)
                      ++
T Consensus       288 N~  289 (319)
T cd00116         288 NK  289 (319)
T ss_pred             CC
Confidence            53

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.42  E-value=1.4e-14  Score=145.79  Aligned_cols=218  Identities=24%  Similarity=0.222  Sum_probs=148.2

Q ss_pred             cCcceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccCccCchhhhhhccCcEeecCCCCCccc
Q 038150          179 KRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVLPETLCELYNLEKLDISDCFNLKE  258 (488)
Q Consensus       179 ~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~lp~~i~~L~~L~~L~l~~~~~~~~  258 (488)
                      .+|.+++++.+ .+.  .+|+++..+.+|..|+..+|.+      .         .+|..+...++|+.|.+.+|. ++.
T Consensus       241 ~nl~~~dis~n-~l~--~lp~wi~~~~nle~l~~n~N~l------~---------~lp~ri~~~~~L~~l~~~~ne-l~y  301 (1081)
T KOG0618|consen  241 LNLQYLDISHN-NLS--NLPEWIGACANLEALNANHNRL------V---------ALPLRISRITSLVSLSAAYNE-LEY  301 (1081)
T ss_pred             ccceeeecchh-hhh--cchHHHHhcccceEecccchhH------H---------hhHHHHhhhhhHHHHHhhhhh-hhh
Confidence            56666666665 344  2456666666666666666663      2         444555555555555555532 444


Q ss_pred             CchhhccccccceeeccCCCCCCCCCCC--------------------------CCCcccccccCceeecCCCCCCCCcc
Q 038150          259 LPEGIGKLINVKHLLNRGTNSLRYMPVG--------------------------IGRLTGLRTLGEFHVSAGGGVDGRKA  312 (488)
Q Consensus       259 lp~~l~~L~~L~~L~l~~~~~~~~lp~~--------------------------i~~L~~L~~L~l~~~~~~~~~~~~~~  312 (488)
                      +|+....++.|++|++..|. +..+|+.                          =..++.|+.|.+.+|...+       
T Consensus       302 ip~~le~~~sL~tLdL~~N~-L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd-------  373 (1081)
T KOG0618|consen  302 IPPFLEGLKSLRTLDLQSNN-LPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTD-------  373 (1081)
T ss_pred             CCCcccccceeeeeeehhcc-ccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccc-------
Confidence            55555555555555555444 2222221                          1235567777777777664       


Q ss_pred             cCcccccCCCccccccccc--ccCCCChhhhhHhhcccCCCCCceeecccCchhhhhhhccccchHHHhhhCCCCCCCCE
Q 038150          313 CRLESLKNLEHLQVCGISR--LGDVSDVGEAKRLELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKE  390 (488)
Q Consensus       313 ~~~~~l~~L~~L~~L~~~~--~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~  390 (488)
                      ..+..+.+..+|+.|.+.+  +..+++      ..+.++..|+.|.+++|++             ..+|..+..++.|++
T Consensus       374 ~c~p~l~~~~hLKVLhLsyNrL~~fpa------s~~~kle~LeeL~LSGNkL-------------~~Lp~tva~~~~L~t  434 (1081)
T KOG0618|consen  374 SCFPVLVNFKHLKVLHLSYNRLNSFPA------SKLRKLEELEELNLSGNKL-------------TTLPDTVANLGRLHT  434 (1081)
T ss_pred             cchhhhccccceeeeeecccccccCCH------HHHhchHHhHHHhcccchh-------------hhhhHHHHhhhhhHH
Confidence            4566778889999988754  455664      6788899999999999998             777889999999999


Q ss_pred             EEeccccCCCCCchHHHhccCCcEEeecCCCCCCC-CCC-CCCCCCcCeeeeccccc
Q 038150          391 LEIEYYRGNTVFPSWMTSLTNLKSLDLSSCENCEQ-LPP-LGKLQSLENLHIWRMES  445 (488)
Q Consensus       391 L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~-~~~-l~~l~~L~~L~l~~~~~  445 (488)
                      |...+|.+.. +| .+..++.|+.+|++.|..... +|. ... |+|++|++++|..
T Consensus       435 L~ahsN~l~~-fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN~~  488 (1081)
T KOG0618|consen  435 LRAHSNQLLS-FP-ELAQLPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLDLSGNTR  488 (1081)
T ss_pred             HhhcCCceee-ch-hhhhcCcceEEecccchhhhhhhhhhCCC-cccceeeccCCcc
Confidence            9999999887 88 788999999999998875443 333 222 8999999999984

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.40  E-value=5.2e-13  Score=138.76  Aligned_cols=225  Identities=19%  Similarity=0.260  Sum_probs=160.4

Q ss_pred             cceeeEEEEecCCcCccccccccCcceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccCccCc
Q 038150          157 KVRHLMLIFSKAASLPISTLRVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVLP  236 (488)
Q Consensus       157 ~vr~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~lp  236 (488)
                      ....+.+.......+|..+  .++++.|++.+| .+.  .+|..+  +.+|++|++++|.      +.         .+|
T Consensus       179 ~~~~L~L~~~~LtsLP~~I--p~~L~~L~Ls~N-~Lt--sLP~~l--~~nL~~L~Ls~N~------Lt---------sLP  236 (754)
T PRK15370        179 NKTELRLKILGLTTIPACI--PEQITTLILDNN-ELK--SLPENL--QGNIKTLYANSNQ------LT---------SIP  236 (754)
T ss_pred             CceEEEeCCCCcCcCCccc--ccCCcEEEecCC-CCC--cCChhh--ccCCCEEECCCCc------cc---------cCC
Confidence            3456777777777788655  368999999998 565  355544  3589999999998      55         444


Q ss_pred             hhhhhhccCcEeecCCCCCcccCchhhccccccceeeccCCCCCCCCCCCCCCcccccccCceeecCCCCCCCCcccCcc
Q 038150          237 ETLCELYNLEKLDISDCFNLKELPEGIGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGRKACRLE  316 (488)
Q Consensus       237 ~~i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~  316 (488)
                      ..+.  .+|+.|++++|. +..+|..+.  .+|+.|++++|. +..+|..+.  ++|++|++++|.+..     .+..+ 
T Consensus       237 ~~l~--~~L~~L~Ls~N~-L~~LP~~l~--s~L~~L~Ls~N~-L~~LP~~l~--~sL~~L~Ls~N~Lt~-----LP~~l-  302 (754)
T PRK15370        237 ATLP--DTIQEMELSINR-ITELPERLP--SALQSLDLFHNK-ISCLPENLP--EELRYLSVYDNSIRT-----LPAHL-  302 (754)
T ss_pred             hhhh--ccccEEECcCCc-cCcCChhHh--CCCCEEECcCCc-cCccccccC--CCCcEEECCCCcccc-----Ccccc-
Confidence            4433  479999999976 678888765  589999999988 456887664  589999999987664     22211 


Q ss_pred             cccCCCccccccccc--ccCCCChhhhhHhhcccCCCCCceeecccCchhhhhhhccccchHHHhhhCCCCCCCCEEEec
Q 038150          317 SLKNLEHLQVCGISR--LGDVSDVGEAKRLELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKELEIE  394 (488)
Q Consensus       317 ~l~~L~~L~~L~~~~--~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~  394 (488)
                        .  ++|+.|.+..  +..++.       .+  .++|+.|++++|.++             .+|..+  +++|+.|+++
T Consensus       303 --p--~sL~~L~Ls~N~Lt~LP~-------~l--~~sL~~L~Ls~N~Lt-------------~LP~~l--~~sL~~L~Ls  354 (754)
T PRK15370        303 --P--SGITHLNVQSNSLTALPE-------TL--PPGLKTLEAGENALT-------------SLPASL--PPELQVLDVS  354 (754)
T ss_pred             --h--hhHHHHHhcCCccccCCc-------cc--cccceeccccCCccc-------------cCChhh--cCcccEEECC
Confidence              1  2455555533  232221       11  267999999999874             344444  3699999999


Q ss_pred             cccCCCCCchHHHhccCCcEEeecCCCCCCCCCC-CCCCCCcCeeeecccccceeeCcc
Q 038150          395 YYRGNTVFPSWMTSLTNLKSLDLSSCENCEQLPP-LGKLQSLENLHIWRMESVKRVGDE  452 (488)
Q Consensus       395 ~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~-l~~l~~L~~L~l~~~~~l~~~~~~  452 (488)
                      +|.+.. +|..+  .++|++|+|++|... .+|. +.  ++|+.|++++|. +..+|..
T Consensus       355 ~N~L~~-LP~~l--p~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~-L~~LP~s  406 (754)
T PRK15370        355 KNQITV-LPETL--PPTITTLDVSRNALT-NLPENLP--AALQIMQASRNN-LVRLPES  406 (754)
T ss_pred             CCCCCc-CChhh--cCCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCC-cccCchh
Confidence            999887 88765  379999999999855 5664 43  479999998876 6677654

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.39  E-value=9.2e-13  Score=136.21  Aligned_cols=114  Identities=21%  Similarity=0.144  Sum_probs=65.2

Q ss_pred             ccceeeEEEEecCCcCccccccccCcceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccCccC
Q 038150          156 EKVRHLMLIFSKAASLPISTLRVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVL  235 (488)
Q Consensus       156 ~~vr~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~l  235 (488)
                      ..++.+.+..+....+|..   .++|++|++.+| .+..  +|.   ..++|+.|++++|.      +.         .+
T Consensus       222 ~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N-~Lts--LP~---lp~sL~~L~Ls~N~------L~---------~L  277 (788)
T PRK15387        222 AHITTLVIPDNNLTSLPAL---PPELRTLEVSGN-QLTS--LPV---LPPGLLELSIFSNP------LT---------HL  277 (788)
T ss_pred             cCCCEEEccCCcCCCCCCC---CCCCcEEEecCC-ccCc--ccC---cccccceeeccCCc------hh---------hh
Confidence            3566666666666666642   466777777775 4442  332   23566777777776      33         23


Q ss_pred             chhhhhhccCcEeecCCCCCcccCchhhccccccceeeccCCCCCCCCCCCCCCcccccccCceeecCC
Q 038150          236 PETLCELYNLEKLDISDCFNLKELPEGIGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFHVSAG  304 (488)
Q Consensus       236 p~~i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~  304 (488)
                      |..   ..+|+.|++++|. +..+|..   +++|++|++++|.+ ..+|...   .+|+.|.+.+|.+.
T Consensus       278 p~l---p~~L~~L~Ls~N~-Lt~LP~~---p~~L~~LdLS~N~L-~~Lp~lp---~~L~~L~Ls~N~L~  335 (788)
T PRK15387        278 PAL---PSGLCKLWIFGNQ-LTSLPVL---PPGLQELSVSDNQL-ASLPALP---SELCKLWAYNNQLT  335 (788)
T ss_pred             hhc---hhhcCEEECcCCc-ccccccc---ccccceeECCCCcc-ccCCCCc---ccccccccccCccc
Confidence            321   2456777787764 6666642   46778888887763 3455422   24555555555443

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.36  E-value=2.8e-14  Score=115.95  Aligned_cols=150  Identities=20%  Similarity=0.262  Sum_probs=89.7

Q ss_pred             cccccceeeEEEEecCCcCccccccccCcceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccC
Q 038150          153 ALDEKVRHLMLIFSKAASLPISTLRVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEK  232 (488)
Q Consensus       153 ~~~~~vr~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~  232 (488)
                      ++...++++.++.+....+|..+..+.+|.+|.+.+| .+.  .+|..+++++.||.|+++-|.      ..        
T Consensus        30 f~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nn-qie--~lp~~issl~klr~lnvgmnr------l~--------   92 (264)
T KOG0617|consen   30 FNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNN-QIE--ELPTSISSLPKLRILNVGMNR------LN--------   92 (264)
T ss_pred             cchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccc-hhh--hcChhhhhchhhhheecchhh------hh--------
Confidence            4445666666666666666666667777777777665 555  355566777777777776666      33        


Q ss_pred             ccCchhhhhhccCcEeecCCCCCcc-cCchhhccccccceeeccCCCCCCCCCCCCCCcccccccCceeecCCCCCCCCc
Q 038150          233 LVLPETLCELYNLEKLDISDCFNLK-ELPEGIGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGRK  311 (488)
Q Consensus       233 l~lp~~i~~L~~L~~L~l~~~~~~~-~lp~~l~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~  311 (488)
                       .+|..+|.++-|+.||+++|+..+ .+|..+-.|+.|+.|++++|. .+.+|..++++++||.|.+..|....      
T Consensus        93 -~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dnd-fe~lp~dvg~lt~lqil~lrdndll~------  164 (264)
T KOG0617|consen   93 -ILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDND-FEILPPDVGKLTNLQILSLRDNDLLS------  164 (264)
T ss_pred             -cCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCC-cccCChhhhhhcceeEEeeccCchhh------
Confidence             455666666666666666654332 356556566666666666665 35556666666666666665554332      


Q ss_pred             ccCcccccCCCccccccc
Q 038150          312 ACRLESLKNLEHLQVCGI  329 (488)
Q Consensus       312 ~~~~~~l~~L~~L~~L~~  329 (488)
                        ...+++.|++|+.|.+
T Consensus       165 --lpkeig~lt~lrelhi  180 (264)
T KOG0617|consen  165 --LPKEIGDLTRLRELHI  180 (264)
T ss_pred             --CcHHHHHHHHHHHHhc
Confidence              2334444445555544

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.28  E-value=1.6e-11  Score=127.13  Aligned_cols=214  Identities=23%  Similarity=0.182  Sum_probs=147.6

Q ss_pred             ccccceeeEEEEecCCcCccccccccCcceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccCc
Q 038150          154 LDEKVRHLMLIFSKAASLPISTLRVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKL  233 (488)
Q Consensus       154 ~~~~vr~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l  233 (488)
                      ....++.+.++.+....+|..   .++|++|++.+| .+.  .+|..   ...|+.|++++|.      +.         
T Consensus       240 lp~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N-~L~--~Lp~l---p~~L~~L~Ls~N~------Lt---------  295 (788)
T PRK15387        240 LPPELRTLEVSGNQLTSLPVL---PPGLLELSIFSN-PLT--HLPAL---PSGLCKLWIFGNQ------LT---------  295 (788)
T ss_pred             CCCCCcEEEecCCccCcccCc---ccccceeeccCC-chh--hhhhc---hhhcCEEECcCCc------cc---------
Confidence            356788999999988888753   478999999997 555  35543   3568899999998      55         


Q ss_pred             cCchhhhhhccCcEeecCCCCCcccCchhhccccccceeeccCCCCCCCCCCCCCCcccccccCceeecCCCCCCCCccc
Q 038150          234 VLPETLCELYNLEKLDISDCFNLKELPEGIGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGRKAC  313 (488)
Q Consensus       234 ~lp~~i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~~  313 (488)
                      .+|.   .+++|++|++++|. +..+|..   ..+|+.|++++|. +..+|..   ..+|++|++++|.+..     .+.
T Consensus       296 ~LP~---~p~~L~~LdLS~N~-L~~Lp~l---p~~L~~L~Ls~N~-L~~LP~l---p~~Lq~LdLS~N~Ls~-----LP~  359 (788)
T PRK15387        296 SLPV---LPPGLQELSVSDNQ-LASLPAL---PSELCKLWAYNNQ-LTSLPTL---PSGLQELSVSDNQLAS-----LPT  359 (788)
T ss_pred             cccc---cccccceeECCCCc-cccCCCC---cccccccccccCc-ccccccc---ccccceEecCCCccCC-----CCC
Confidence            3443   23679999999975 6667653   2457788888887 4456642   2578999998887765     332


Q ss_pred             CcccccCCCccccccc--ccccCCCChhhhhHhhcccCCCCCceeecccCchhhhhhhccccchHHHhhhCCCCCCCCEE
Q 038150          314 RLESLKNLEHLQVCGI--SRLGDVSDVGEAKRLELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKEL  391 (488)
Q Consensus       314 ~~~~l~~L~~L~~L~~--~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L  391 (488)
                      ..      .+|..|.+  +.+..++.          ...+|+.|++++|.+.             .+|..   +++|+.|
T Consensus       360 lp------~~L~~L~Ls~N~L~~LP~----------l~~~L~~LdLs~N~Lt-------------~LP~l---~s~L~~L  407 (788)
T PRK15387        360 LP------SELYKLWAYNNRLTSLPA----------LPSGLKELIVSGNRLT-------------SLPVL---PSELKEL  407 (788)
T ss_pred             CC------cccceehhhccccccCcc----------cccccceEEecCCccc-------------CCCCc---ccCCCEE
Confidence            22      22333333  33333331          1256888999988874             22322   3578899


Q ss_pred             EeccccCCCCCchHHHhccCCcEEeecCCCCCCCCCC-CCCCCCcCeeeecccc
Q 038150          392 EIEYYRGNTVFPSWMTSLTNLKSLDLSSCENCEQLPP-LGKLQSLENLHIWRME  444 (488)
Q Consensus       392 ~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~-l~~l~~L~~L~l~~~~  444 (488)
                      ++++|.+.. +|..   +.+|+.|++++|.+ +.+|. ++.+++|+.|++++|+
T Consensus       408 dLS~N~Lss-IP~l---~~~L~~L~Ls~NqL-t~LP~sl~~L~~L~~LdLs~N~  456 (788)
T PRK15387        408 MVSGNRLTS-LPML---PSGLLSLSVYRNQL-TRLPESLIHLSSETTVNLEGNP  456 (788)
T ss_pred             EccCCcCCC-CCcc---hhhhhhhhhccCcc-cccChHHhhccCCCeEECCCCC
Confidence            999988887 7763   34678888888875 45776 8888999999998887

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.26  E-value=1.2e-12  Score=120.20  Aligned_cols=263  Identities=17%  Similarity=0.144  Sum_probs=169.5

Q ss_pred             cccccceeeEEEEecCCcCcc-ccccccCcceecccccchhhhhhHHHHHhcCCccceeecCC-CcccccccCCcccccc
Q 038150          153 ALDEKVRHLMLIFSKAASLPI-STLRVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGG-SYHSTRLLTPEVPRNI  230 (488)
Q Consensus       153 ~~~~~vr~l~l~~~~~~~~~~-~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~-~~~~~~~~~~~lp~~i  230 (488)
                      ..+.....+.+..+.+..+|. .|+.+++||.|+++.| .+.. +-|..|..++.|-.|-+.+ |+      +.++|+  
T Consensus        64 ~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N-~Is~-I~p~AF~GL~~l~~Lvlyg~Nk------I~~l~k--  133 (498)
T KOG4237|consen   64 NLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKN-NISF-IAPDAFKGLASLLSLVLYGNNK------ITDLPK--  133 (498)
T ss_pred             cCCCcceEEEeccCCcccCChhhccchhhhceeccccc-chhh-cChHhhhhhHhhhHHHhhcCCc------hhhhhh--
Confidence            445666789999999988875 5788999999999998 7777 7888899999988776666 66      775554  


Q ss_pred             cCccCchhhhhhccCcEeecCCCCCcccCchhhccccccceeeccCCCCCCCCCC-CCCCcccccccCceeecCCCCCC-
Q 038150          231 EKLVLPETLCELYNLEKLDISDCFNLKELPEGIGKLINVKHLLNRGTNSLRYMPV-GIGRLTGLRTLGEFHVSAGGGVD-  308 (488)
Q Consensus       231 ~~l~lp~~i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~L~l~~~~~~~~lp~-~i~~L~~L~~L~l~~~~~~~~~~-  308 (488)
                            ..+++|..|+.|.+.-|...-.....+..|++|..|.+.+|. ...++. .+..+.+++++++..+.+..... 
T Consensus       134 ------~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~-~q~i~~~tf~~l~~i~tlhlA~np~icdCnL  206 (498)
T KOG4237|consen  134 ------GAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNK-IQSICKGTFQGLAAIKTLHLAQNPFICDCNL  206 (498)
T ss_pred             ------hHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchh-hhhhccccccchhccchHhhhcCcccccccc
Confidence                  347789999999998876444455678999999999999987 566665 47888999999887765221100 


Q ss_pred             ----CCcccCcccccCCCccc-----ccccccc---------cCCC------C--hhhhhHhhcccCCCCCceeecccCc
Q 038150          309 ----GRKACRLESLKNLEHLQ-----VCGISRL---------GDVS------D--VGEAKRLELDKKKYLSSLTLWFDKE  362 (488)
Q Consensus       309 ----~~~~~~~~~l~~L~~L~-----~L~~~~~---------~~~~------~--~~~~~~~~l~~l~~L~~L~l~~~~~  362 (488)
                          ........+.+..+-..     .-.++..         +..+      +  ...--...++.+++|++|++++|++
T Consensus       207 ~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i  286 (498)
T KOG4237|consen  207 PWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKI  286 (498)
T ss_pred             chhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCcc
Confidence                00000000011110000     0001000         0000      0  0000123477889999999999988


Q ss_pred             hhhhhhhccccchHHHhhhCCCCCCCCEEEeccccCCCCCchHHHhccCCcEEeecCCCCCCCCCC-CCCCCCcCeeeec
Q 038150          363 EEEEGERRKNEDNQLLLEALRPPLNLKELEIEYYRGNTVFPSWMTSLTNLKSLDLSSCENCEQLPP-LGKLQSLENLHIW  441 (488)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~-l~~l~~L~~L~l~  441 (488)
                      +..            -..++.....++.|.|..|.+...--..+..+.+|+.|++++|++..-.|. +..+.+|.+|.+-
T Consensus       287 ~~i------------~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~  354 (498)
T KOG4237|consen  287 TRI------------EDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLL  354 (498)
T ss_pred             chh------------hhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehc
Confidence            633            345666677777777777766642233455677777777777776555554 6666677777665


Q ss_pred             ccc
Q 038150          442 RME  444 (488)
Q Consensus       442 ~~~  444 (488)
                      .++
T Consensus       355 ~Np  357 (498)
T KOG4237|consen  355 SNP  357 (498)
T ss_pred             cCc
Confidence            544

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.12  E-value=3.3e-12  Score=117.32  Aligned_cols=257  Identities=16%  Similarity=0.234  Sum_probs=163.3

Q ss_pred             CcCccccccccCcceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccCccCchhhhhhccCcEe
Q 038150          169 ASLPISTLRVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVLPETLCELYNLEKL  248 (488)
Q Consensus       169 ~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~lp~~i~~L~~L~~L  248 (488)
                      .++|..+.  +....+.+..| .++. .++..|+.++.||.||||+|.      +..        --|..+..|..|..|
T Consensus        59 ~eVP~~LP--~~tveirLdqN-~I~~-iP~~aF~~l~~LRrLdLS~N~------Is~--------I~p~AF~GL~~l~~L  120 (498)
T KOG4237|consen   59 TEVPANLP--PETVEIRLDQN-QISS-IPPGAFKTLHRLRRLDLSKNN------ISF--------IAPDAFKGLASLLSL  120 (498)
T ss_pred             ccCcccCC--CcceEEEeccC-Cccc-CChhhccchhhhceecccccc------hhh--------cChHhhhhhHhhhHH
Confidence            55554332  45567778776 6776 778889999999999999999      443        346788899999999


Q ss_pred             ecCCCCCcccCchh-hccccccceeeccCCCCCCCCCCCCCCcccccccCceeecCCCCCCCCcccCcccccCCCccccc
Q 038150          249 DISDCFNLKELPEG-IGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGRKACRLESLKNLEHLQVC  327 (488)
Q Consensus       249 ~l~~~~~~~~lp~~-l~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~L  327 (488)
                      -+.+++.+..+|.+ ++.|..|+.|.+.-|.........+..|++|..|.+.+|.+..-     ..  ..+..+..++.+
T Consensus       121 vlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i-----~~--~tf~~l~~i~tl  193 (498)
T KOG4237|consen  121 VLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSI-----CK--GTFQGLAAIKTL  193 (498)
T ss_pred             HhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhh-----cc--ccccchhccchH
Confidence            88887779999975 69999999999988874444445688999999999988865541     11  112223333332


Q ss_pred             ccc--------cccCCCChhhhhHhhcccCCCCCceeecccCchhh-----------hhh-hccccc-hHHHh-hhCCCC
Q 038150          328 GIS--------RLGDVSDVGEAKRLELDKKKYLSSLTLWFDKEEEE-----------EGE-RRKNED-NQLLL-EALRPP  385 (488)
Q Consensus       328 ~~~--------~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-----------~~~-~~~~~~-~~~~~-~~~~~~  385 (488)
                      .+.        ++....+.....+..++.........+.+.++...           .+. ....+. ....| .-+..+
T Consensus       194 hlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L  273 (498)
T KOG4237|consen  194 HLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKL  273 (498)
T ss_pred             hhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhc
Confidence            221        11111111111112222222222222222211100           000 000000 01111 226678


Q ss_pred             CCCCEEEeccccCCCCCchHHHhccCCcEEeecCCCCCCCCCC--CCCCCCcCeeeecccccceeeCcc
Q 038150          386 LNLKELEIEYYRGNTVFPSWMTSLTNLKSLDLSSCENCEQLPP--LGKLQSLENLHIWRMESVKRVGDE  452 (488)
Q Consensus       386 ~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~--l~~l~~L~~L~l~~~~~l~~~~~~  452 (488)
                      ++|++|++++|.+...-+.|+.....++.|.+..|.+ ..+..  +..+..|+.|++.++. ++.+..+
T Consensus       274 ~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l-~~v~~~~f~~ls~L~tL~L~~N~-it~~~~~  340 (498)
T KOG4237|consen  274 PNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKL-EFVSSGMFQGLSGLKTLSLYDNQ-ITTVAPG  340 (498)
T ss_pred             ccceEeccCCCccchhhhhhhcchhhhhhhhcCcchH-HHHHHHhhhccccceeeeecCCe-eEEEecc
Confidence            9999999999999986688999999999999999874 33332  7789999999999987 6666443

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.01  E-value=1.9e-11  Score=117.35  Aligned_cols=197  Identities=24%  Similarity=0.279  Sum_probs=132.3

Q ss_pred             cccccceeeEEEEecCCcCccccccccCcceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccC
Q 038150          153 ALDEKVRHLMLIFSKAASLPISTLRVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEK  232 (488)
Q Consensus       153 ~~~~~vr~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~  232 (488)
                      +........+++.+....+|..+..|..|..+.+..| .+.  .+|..+.++..|.+|||+.|.      ..        
T Consensus        72 ~~ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n-~~r--~ip~~i~~L~~lt~l~ls~Nq------lS--------  134 (722)
T KOG0532|consen   72 YDLTDTVFADLSRNRFSELPEEACAFVSLESLILYHN-CIR--TIPEAICNLEALTFLDLSSNQ------LS--------  134 (722)
T ss_pred             ccccchhhhhccccccccCchHHHHHHHHHHHHHHhc-cce--ecchhhhhhhHHHHhhhccch------hh--------
Confidence            4444445566666666777777777777777777665 333  466667777777777777777      33        


Q ss_pred             ccCchhhhhhccCcEeecCCCCCcccCchhhccccccceeeccCCCCCCCCCCCCCCcccccccCceeecCCCCCCCCcc
Q 038150          233 LVLPETLCELYNLEKLDISDCFNLKELPEGIGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGRKA  312 (488)
Q Consensus       233 l~lp~~i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~  312 (488)
                       .+|..++.|+ |+.|.+++|+ ++.+|..++.+.+|.+|+.+.|. +..+|..++.+.+|+.|.+..|....     . 
T Consensus       135 -~lp~~lC~lp-Lkvli~sNNk-l~~lp~~ig~~~tl~~ld~s~ne-i~slpsql~~l~slr~l~vrRn~l~~-----l-  204 (722)
T KOG0532|consen  135 -HLPDGLCDLP-LKVLIVSNNK-LTSLPEEIGLLPTLAHLDVSKNE-IQSLPSQLGYLTSLRDLNVRRNHLED-----L-  204 (722)
T ss_pred             -cCChhhhcCc-ceeEEEecCc-cccCCcccccchhHHHhhhhhhh-hhhchHHhhhHHHHHHHHHhhhhhhh-----C-
Confidence             5566666665 6777777743 67777777777777777777776 55667777777777777766655433     1 


Q ss_pred             cCcccccCCCcccccccccccCCCChhhhhHhhcccCCCCCceeecccCchhhhhhhccccchHHHhhhCCCCCCCCEEE
Q 038150          313 CRLESLKNLEHLQVCGISRLGDVSDVGEAKRLELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKELE  392 (488)
Q Consensus       313 ~~~~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~  392 (488)
                                                    +..+.. =.|..|++++|++             ..+|-.+..|+.|+.|.
T Consensus       205 ------------------------------p~El~~-LpLi~lDfScNki-------------s~iPv~fr~m~~Lq~l~  240 (722)
T KOG0532|consen  205 ------------------------------PEELCS-LPLIRLDFSCNKI-------------SYLPVDFRKMRHLQVLQ  240 (722)
T ss_pred             ------------------------------CHHHhC-CceeeeecccCce-------------eecchhhhhhhhheeee
Confidence                                          122332 2377888888887             66788888888999999


Q ss_pred             eccccCCCCCchHHH---hccCCcEEeecCCC
Q 038150          393 IEYYRGNTVFPSWMT---SLTNLKSLDLSSCE  421 (488)
Q Consensus       393 l~~~~~~~~lp~~~~---~l~~L~~L~l~~~~  421 (488)
                      |.+|.+.. .|..|.   ...=.++|++.-|.
T Consensus       241 LenNPLqS-PPAqIC~kGkVHIFKyL~~qA~q  271 (722)
T KOG0532|consen  241 LENNPLQS-PPAQICEKGKVHIFKYLSTQACQ  271 (722)
T ss_pred             eccCCCCC-ChHHHHhccceeeeeeecchhcc
Confidence            98888876 666654   34445677777774

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.98  E-value=5.2e-11  Score=114.45  Aligned_cols=210  Identities=22%  Similarity=0.249  Sum_probs=157.2

Q ss_pred             eEEEEecCCcCcccc--ccccCcceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccCccCchh
Q 038150          161 LMLIFSKAASLPIST--LRVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVLPET  238 (488)
Q Consensus       161 l~l~~~~~~~~~~~~--~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~lp~~  238 (488)
                      +.+.+.....||..-  ..+..-...+++.| .+.  .+|..+..|..|..+.|..|.      +.         .+|..
T Consensus        55 l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrN-R~~--elp~~~~~f~~Le~liLy~n~------~r---------~ip~~  116 (722)
T KOG0532|consen   55 LLLSGRRLKEFPRGAASYDLTDTVFADLSRN-RFS--ELPEEACAFVSLESLILYHNC------IR---------TIPEA  116 (722)
T ss_pred             cccccchhhcCCCccccccccchhhhhcccc-ccc--cCchHHHHHHHHHHHHHHhcc------ce---------ecchh
Confidence            445555555565332  23444456677776 555  467778888888888888887      44         67888


Q ss_pred             hhhhccCcEeecCCCCCcccCchhhccccccceeeccCCCCCCCCCCCCCCcccccccCceeecCCCCCCCCcccCcccc
Q 038150          239 LCELYNLEKLDISDCFNLKELPEGIGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGRKACRLESL  318 (488)
Q Consensus       239 i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l  318 (488)
                      +++|..|.+|||+.|. +..+|..++.|+ |+.|-+++|+ .+.+|.+|+.+..|..|+.+.|.+..             
T Consensus       117 i~~L~~lt~l~ls~Nq-lS~lp~~lC~lp-Lkvli~sNNk-l~~lp~~ig~~~tl~~ld~s~nei~s-------------  180 (722)
T KOG0532|consen  117 ICNLEALTFLDLSSNQ-LSHLPDGLCDLP-LKVLIVSNNK-LTSLPEEIGLLPTLAHLDVSKNEIQS-------------  180 (722)
T ss_pred             hhhhhHHHHhhhccch-hhcCChhhhcCc-ceeEEEecCc-cccCCcccccchhHHHhhhhhhhhhh-------------
Confidence            8999999999999964 788888888765 8888888887 67889889988888888887775443             


Q ss_pred             cCCCcccccccccccCCCChhhhhHhhcccCCCCCceeecccCchhhhhhhccccchHHHhhhCCCCCCCCEEEeccccC
Q 038150          319 KNLEHLQVCGISRLGDVSDVGEAKRLELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKELEIEYYRG  398 (488)
Q Consensus       319 ~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  398 (488)
                                             ++..+..+..|+.|.+..|+.             ..+|+.+..+ .|.+|+++.|.+
T Consensus       181 -----------------------lpsql~~l~slr~l~vrRn~l-------------~~lp~El~~L-pLi~lDfScNki  223 (722)
T KOG0532|consen  181 -----------------------LPSQLGYLTSLRDLNVRRNHL-------------EDLPEELCSL-PLIRLDFSCNKI  223 (722)
T ss_pred             -----------------------chHHhhhHHHHHHHHHhhhhh-------------hhCCHHHhCC-ceeeeecccCce
Confidence                                   235566677777788888876             6677888755 599999999999


Q ss_pred             CCCCchHHHhccCCcEEeecCCCCCCCCCC----CCCCCCcCeeeeccc
Q 038150          399 NTVFPSWMTSLTNLKSLDLSSCENCEQLPP----LGKLQSLENLHIWRM  443 (488)
Q Consensus       399 ~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~----l~~l~~L~~L~l~~~  443 (488)
                      .. +|..+..+..|++|.|.+|+ ++..|.    .|..-=.++|++.-|
T Consensus       224 s~-iPv~fr~m~~Lq~l~LenNP-LqSPPAqIC~kGkVHIFKyL~~qA~  270 (722)
T KOG0532|consen  224 SY-LPVDFRKMRHLQVLQLENNP-LQSPPAQICEKGKVHIFKYLSTQAC  270 (722)
T ss_pred             ee-cchhhhhhhhheeeeeccCC-CCCChHHHHhccceeeeeeecchhc
Confidence            98 99999999999999999998 555554    344455567777666

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.97  E-value=2.5e-10  Score=103.70  Aligned_cols=248  Identities=17%  Similarity=0.122  Sum_probs=170.7

Q ss_pred             ccccccCcceecccccchhhh---hhHHHHHhcCCccceeecCCCcccccccCCcccccccCccCch-------hhhhhc
Q 038150          174 STLRVKRMRTLLINDHSLLNA---AILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVLPE-------TLCELY  243 (488)
Q Consensus       174 ~~~~~~~Lr~L~l~~~~~~~~---~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~lp~-------~i~~L~  243 (488)
                      ....+..+..++++||+ ++.   ..+...+.+.+.||..++|...      .+.+-.     .+|+       .+-..+
T Consensus        25 ~~~~~~s~~~l~lsgnt-~G~EAa~~i~~~L~~~~~L~~v~~sd~f------tGR~~~-----Ei~e~L~~l~~aL~~~~   92 (382)
T KOG1909|consen   25 ELEPMDSLTKLDLSGNT-FGTEAARAIAKVLASKKELREVNLSDMF------TGRLKD-----EIPEALKMLSKALLGCP   92 (382)
T ss_pred             HhcccCceEEEeccCCc-hhHHHHHHHHHHHhhcccceeeehHhhh------cCCcHH-----HHHHHHHHHHHHHhcCC
Confidence            34457788999999983 332   1355567888899999998764      443222     3343       344567


Q ss_pred             cCcEeecCCCCCcccCchh----hccccccceeeccCCCCCCC-------------CCCCCCCcccccccCceeecCCCC
Q 038150          244 NLEKLDISDCFNLKELPEG----IGKLINVKHLLNRGTNSLRY-------------MPVGIGRLTGLRTLGEFHVSAGGG  306 (488)
Q Consensus       244 ~L~~L~l~~~~~~~~lp~~----l~~L~~L~~L~l~~~~~~~~-------------lp~~i~~L~~L~~L~l~~~~~~~~  306 (488)
                      +|++|+||+|-+-..-++.    +.+...|+||++.+|.+...             .-+-++.-+.|+++....|+..+.
T Consensus        93 ~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~  172 (382)
T KOG1909|consen   93 KLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENG  172 (382)
T ss_pred             ceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccc
Confidence            8999999998755444443    45678999999999874311             112245567899998888877663


Q ss_pred             CCCCcccCcccccCCCcccccccccccCCCChhhhhHhhcccCCCCCceeecccCchhhhhhhccccchHHHhhhCCCCC
Q 038150          307 VDGRKACRLESLKNLEHLQVCGISRLGDVSDVGEAKRLELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPL  386 (488)
Q Consensus       307 ~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  386 (488)
                      .   .......+...+.|+.+.+...+.-+....++...+..+++|+.|++..|.++...        ...+...++.++
T Consensus       173 g---a~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~eg--------s~~LakaL~s~~  241 (382)
T KOG1909|consen  173 G---ATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEG--------SVALAKALSSWP  241 (382)
T ss_pred             c---HHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHH--------HHHHHHHhcccc
Confidence            2   11222334445666666665554444444678889999999999999999876442        266667788889


Q ss_pred             CCCEEEeccccCCCCCchHHH-----hccCCcEEeecCCCCCCCC----C-CCCCCCCcCeeeecccc
Q 038150          387 NLKELEIEYYRGNTVFPSWMT-----SLTNLKSLDLSSCENCEQL----P-PLGKLQSLENLHIWRME  444 (488)
Q Consensus       387 ~L~~L~l~~~~~~~~lp~~~~-----~l~~L~~L~l~~~~~~~~~----~-~l~~l~~L~~L~l~~~~  444 (488)
                      +|+.|.++.|.....-...+.     ..|+|+.|.+.+|.+..+-    . .+...|.|+.|+|++|.
T Consensus       242 ~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~  309 (382)
T KOG1909|consen  242 HLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNR  309 (382)
T ss_pred             hheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence            999999999987653222222     5799999999999876642    1 25568999999999997

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.84  E-value=1.6e-09  Score=96.40  Aligned_cols=84  Identities=26%  Similarity=0.163  Sum_probs=39.9

Q ss_pred             cccCCCCCceeecccCchhhhhhhccccchHHHhhhCCCCCCCCEEEeccccCCCCCchHHHhccCCcEEeecCCCCCC-
Q 038150          346 LDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKELEIEYYRGNTVFPSWMTSLTNLKSLDLSSCENCE-  424 (488)
Q Consensus       346 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~-  424 (488)
                      +..+.+|+.|++++|.+             ..+-.|-..+.|.++|.+++|.+.+  ...++.+-+|..|++++|++.+ 
T Consensus       325 La~L~~L~~LDLS~N~L-------------s~~~Gwh~KLGNIKtL~La~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~l  389 (490)
T KOG1259|consen  325 LAELPQLQLLDLSGNLL-------------AECVGWHLKLGNIKTLKLAQNKIET--LSGLRKLYSLVNLDLSSNQIEEL  389 (490)
T ss_pred             hhhcccceEeecccchh-------------HhhhhhHhhhcCEeeeehhhhhHhh--hhhhHhhhhheeccccccchhhH
Confidence            44455555555555544             2222333344455555555554442  2224445555555555554322 


Q ss_pred             -CCCCCCCCCCcCeeeecccc
Q 038150          425 -QLPPLGKLQSLENLHIWRME  444 (488)
Q Consensus       425 -~~~~l~~l~~L~~L~l~~~~  444 (488)
                       .+-.+|++|.|+++.+.+++
T Consensus       390 deV~~IG~LPCLE~l~L~~NP  410 (490)
T KOG1259|consen  390 DEVNHIGNLPCLETLRLTGNP  410 (490)
T ss_pred             HHhcccccccHHHHHhhcCCC
Confidence             12225555555555555555

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.84  E-value=3.2e-10  Score=102.95  Aligned_cols=257  Identities=21%  Similarity=0.177  Sum_probs=170.3

Q ss_pred             HHHHHhcCCccceeecCCCcccccccCCcccccccCccCchhhhhhccCcEeecCCCCCc----ccCchhh-------cc
Q 038150          197 LEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVLPETLCELYNLEKLDISDCFNL----KELPEGI-------GK  265 (488)
Q Consensus       197 ~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~lp~~i~~L~~L~~L~l~~~~~~----~~lp~~l-------~~  265 (488)
                      +-+.+..+..+..++||+|.+     ...-..     .+-+.+.+.+.|+.-++++- +.    .++|..+       -.
T Consensus        22 v~~~~~~~~s~~~l~lsgnt~-----G~EAa~-----~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~   90 (382)
T KOG1909|consen   22 VEEELEPMDSLTKLDLSGNTF-----GTEAAR-----AIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLG   90 (382)
T ss_pred             HHHHhcccCceEEEeccCCch-----hHHHHH-----HHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhc
Confidence            444578889999999999985     322111     22344566778888888762 22    2355443       34


Q ss_pred             ccccceeeccCCCCCCCCCCC----CCCcccccccCceeecCCCCCCCCcccCc------ccccCCCcccccccccccCC
Q 038150          266 LINVKHLLNRGTNSLRYMPVG----IGRLTGLRTLGEFHVSAGGGVDGRKACRL------ESLKNLEHLQVCGISRLGDV  335 (488)
Q Consensus       266 L~~L~~L~l~~~~~~~~lp~~----i~~L~~L~~L~l~~~~~~~~~~~~~~~~~------~~l~~L~~L~~L~~~~~~~~  335 (488)
                      .++|+.|++++|-+....+++    |.+.++|++|.+.+|.+...........+      ...++-+.|+.+.+....-.
T Consensus        91 ~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrle  170 (382)
T KOG1909|consen   91 CPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLE  170 (382)
T ss_pred             CCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccc
Confidence            569999999999876555544    46789999999988876542211112211      22344566777666433333


Q ss_pred             CChhhhhHhhcccCCCCCceeecccCchhhhhhhccccchHHHhhhCCCCCCCCEEEeccccCCCC----CchHHHhccC
Q 038150          336 SDVGEAKRLELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKELEIEYYRGNTV----FPSWMTSLTN  411 (488)
Q Consensus       336 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~----lp~~~~~l~~  411 (488)
                      .....++...+..++.|+.+.+..|.+...        ....+...+..+++|+.|+|..|.+...    +...+..+++
T Consensus       171 n~ga~~~A~~~~~~~~leevr~~qN~I~~e--------G~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~  242 (382)
T KOG1909|consen  171 NGGATALAEAFQSHPTLEEVRLSQNGIRPE--------GVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPH  242 (382)
T ss_pred             cccHHHHHHHHHhccccceEEEecccccCc--------hhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccch
Confidence            344556667788889999999999987532        2256677888999999999999987642    2233446789


Q ss_pred             CcEEeecCCCCCCCC----C-C-CCCCCCcCeeeecccccceeeCccccCCCCCCCCCCCCCcccccCcccccccccccc
Q 038150          412 LKSLDLSSCENCEQL----P-P-LGKLQSLENLHIWRMESVKRVGDEFLGIESDHHGSSSSSSVIIAFPKLKSLSIEVLR  485 (488)
Q Consensus       412 L~~L~l~~~~~~~~~----~-~-l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~p  485 (488)
                      |+.|.+++|.....-    . . -...|+|+.|.+.+|. ++.-....+...            ....|.|+.|.+.+|.
T Consensus       243 L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNe-It~da~~~la~~------------~~ek~dL~kLnLngN~  309 (382)
T KOG1909|consen  243 LRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNE-ITRDAALALAAC------------MAEKPDLEKLNLNGNR  309 (382)
T ss_pred             heeecccccccccccHHHHHHHHhccCCCCceeccCcch-hHHHHHHHHHHH------------HhcchhhHHhcCCccc
Confidence            999999999865431    1 1 3458999999999987 333322222222            4458999999998874

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.81  E-value=1.4e-09  Score=101.59  Aligned_cols=201  Identities=14%  Similarity=0.055  Sum_probs=124.5

Q ss_pred             cCCCCCCCcccccccceeeEEEEecCCcCcc--ccccccCcceecccccchhhhhhHHHHHhcCCccceeecCCCccccc
Q 038150          143 NGSEEPNATNALDEKVRHLMLIFSKAASLPI--STLRVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTR  220 (488)
Q Consensus       143 ~g~~~~~~t~~~~~~vr~l~l~~~~~~~~~~--~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~  220 (488)
                      +||+.+.+...+.+++|.+++..+.....+.  ....|+++|.|++++|-......+-.....+++|+.|+|+.|.+.+-
T Consensus       108 iGfDki~akQsn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~  187 (505)
T KOG3207|consen  108 IGFDKIAAKQSNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNF  187 (505)
T ss_pred             ecHHHHHHHhhhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCC
Confidence            4555555555677888999998887755552  56679999999999983333334556678999999999999985211


Q ss_pred             ccCCcccccccCccCchhhhhhccCcEeecCCCCCccc-CchhhccccccceeeccCCCCCCCCCCCCCCcccccccCce
Q 038150          221 LLTPEVPRNIEKLVLPETLCELYNLEKLDISDCFNLKE-LPEGIGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEF  299 (488)
Q Consensus       221 ~~~~~lp~~i~~l~lp~~i~~L~~L~~L~l~~~~~~~~-lp~~l~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~  299 (488)
                        .+         .  ..-..+.+|+.|.++.|..... +-..+..+++|..|++..|.....-......+..|++|++.
T Consensus       188 --~~---------s--~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs  254 (505)
T KOG3207|consen  188 --IS---------S--NTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLS  254 (505)
T ss_pred             --cc---------c--cchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhcccc
Confidence              11         0  1123688999999999975432 32334567899999999885222222234457889999999


Q ss_pred             eecCCCCCCCCcccCcccccCCCccccccccccc--CCCChhhhhHhhcccCCCCCceeecccCc
Q 038150          300 HVSAGGGVDGRKACRLESLKNLEHLQVCGISRLG--DVSDVGEAKRLELDKKKYLSSLTLWFDKE  362 (488)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~--~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  362 (488)
                      +|....      .......+.++.|+.|.+..++  .+....-........+++|+.|.+..|++
T Consensus       255 ~N~li~------~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I  313 (505)
T KOG3207|consen  255 NNNLID------FDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNI  313 (505)
T ss_pred             CCcccc------cccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCcc
Confidence            887665      2222344455555555543322  11111111112233455666666666654

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.74  E-value=5.6e-09  Score=103.27  Aligned_cols=107  Identities=27%  Similarity=0.371  Sum_probs=67.9

Q ss_pred             ccccCcceecccccchhhhhhHHHHHhcCC-ccceeecCCCcccccccCCcccccccCccCchhhhhhccCcEeecCCCC
Q 038150          176 LRVKRMRTLLINDHSLLNAAILEELFRELT-SLRALDFGGSYHSTRLLTPEVPRNIEKLVLPETLCELYNLEKLDISDCF  254 (488)
Q Consensus       176 ~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~-~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~lp~~i~~L~~L~~L~l~~~~  254 (488)
                      ..++.+..|.+.++ .+.  .++.....+. +|+.|+++++.      +.         .+|..++.+++|+.|++++|.
T Consensus       113 ~~~~~l~~L~l~~n-~i~--~i~~~~~~~~~nL~~L~l~~N~------i~---------~l~~~~~~l~~L~~L~l~~N~  174 (394)
T COG4886         113 LELTNLTSLDLDNN-NIT--DIPPLIGLLKSNLKELDLSDNK------IE---------SLPSPLRNLPNLKNLDLSFND  174 (394)
T ss_pred             hcccceeEEecCCc-ccc--cCccccccchhhcccccccccc------hh---------hhhhhhhccccccccccCCch
Confidence            34466777777665 343  2444344553 77777777776      44         455566777777777777754


Q ss_pred             CcccCchhhccccccceeeccCCCCCCCCCCCCCCcccccccCceeec
Q 038150          255 NLKELPEGIGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFHVS  302 (488)
Q Consensus       255 ~~~~lp~~l~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~  302 (488)
                       +..+|...+.+++|+.|++++|. ...+|..++.+..|++|.+..+.
T Consensus       175 -l~~l~~~~~~~~~L~~L~ls~N~-i~~l~~~~~~~~~L~~l~~~~N~  220 (394)
T COG4886         175 -LSDLPKLLSNLSNLNNLDLSGNK-ISDLPPEIELLSALEELDLSNNS  220 (394)
T ss_pred             -hhhhhhhhhhhhhhhheeccCCc-cccCchhhhhhhhhhhhhhcCCc
Confidence             66666666677777777777776 45566655556667777766663

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.72  E-value=7.7e-09  Score=102.31  Aligned_cols=198  Identities=28%  Similarity=0.293  Sum_probs=142.9

Q ss_pred             eecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccCccCchhhhhhc-cCcEeecCCCCCcccCch
Q 038150          183 TLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVLPETLCELY-NLEKLDISDCFNLKELPE  261 (488)
Q Consensus       183 ~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~lp~~i~~L~-~L~~L~l~~~~~~~~lp~  261 (488)
                      .+....+ .+.. ... .+..+..+..|++.++.      +.         .+|..++.+. +|+.|++++|. +..+|.
T Consensus        97 ~l~~~~~-~~~~-~~~-~~~~~~~l~~L~l~~n~------i~---------~i~~~~~~~~~nL~~L~l~~N~-i~~l~~  157 (394)
T COG4886          97 SLDLNLN-RLRS-NIS-ELLELTNLTSLDLDNNN------IT---------DIPPLIGLLKSNLKELDLSDNK-IESLPS  157 (394)
T ss_pred             eeecccc-cccc-Cch-hhhcccceeEEecCCcc------cc---------cCccccccchhhcccccccccc-hhhhhh
Confidence            5666665 3311 222 25667899999999998      66         6666777775 99999999965 888888


Q ss_pred             hhccccccceeeccCCCCCCCCCCCCCCcccccccCceeecCCCCCCCCcccCcccccCCCcccccccccccCCCChhhh
Q 038150          262 GIGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGRKACRLESLKNLEHLQVCGISRLGDVSDVGEA  341 (488)
Q Consensus       262 ~l~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~~~~  341 (488)
                      .++.+++|+.|++++|. +..+|...+.+++|+.|+++++.+..     .+..+   ..+..|..+.+..-..+.     
T Consensus       158 ~~~~l~~L~~L~l~~N~-l~~l~~~~~~~~~L~~L~ls~N~i~~-----l~~~~---~~~~~L~~l~~~~N~~~~-----  223 (394)
T COG4886         158 PLRNLPNLKNLDLSFND-LSDLPKLLSNLSNLNNLDLSGNKISD-----LPPEI---ELLSALEELDLSNNSIIE-----  223 (394)
T ss_pred             hhhccccccccccCCch-hhhhhhhhhhhhhhhheeccCCcccc-----Cchhh---hhhhhhhhhhhcCCccee-----
Confidence            89999999999999998 67778777789999999999987665     22222   233445555554332111     


Q ss_pred             hHhhcccCCCCCceeecccCchhhhhhhccccchHHHhhhCCCCCCCCEEEeccccCCCCCchHHHhccCCcEEeecCCC
Q 038150          342 KRLELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKELEIEYYRGNTVFPSWMTSLTNLKSLDLSSCE  421 (488)
Q Consensus       342 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~  421 (488)
                      ....+.++.++..+.+..+++             ..++..++.+++|+.|.+++|.+.. ++. ++.+.+|+.|+++++.
T Consensus       224 ~~~~~~~~~~l~~l~l~~n~~-------------~~~~~~~~~l~~l~~L~~s~n~i~~-i~~-~~~~~~l~~L~~s~n~  288 (394)
T COG4886         224 LLSSLSNLKNLSGLELSNNKL-------------EDLPESIGNLSNLETLDLSNNQISS-ISS-LGSLTNLRELDLSGNS  288 (394)
T ss_pred             cchhhhhcccccccccCCcee-------------eeccchhccccccceeccccccccc-ccc-ccccCccCEEeccCcc
Confidence            224566677777777777765             3335677788888999988888887 655 7788888999988888


Q ss_pred             CCCCCCC
Q 038150          422 NCEQLPP  428 (488)
Q Consensus       422 ~~~~~~~  428 (488)
                      ....++.
T Consensus       289 ~~~~~~~  295 (394)
T COG4886         289 LSNALPL  295 (394)
T ss_pred             ccccchh
Confidence            7666554

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.68  E-value=5.6e-10  Score=99.18  Aligned_cols=182  Identities=19%  Similarity=0.147  Sum_probs=96.3

Q ss_pred             ccceeeccCCCCCCC-CCCCCCCcccccccCceeecCCCCCCCCcccCcccccCCCcccccccccccCCCChhhhhHhhc
Q 038150          268 NVKHLLNRGTNSLRY-MPVGIGRLTGLRTLGEFHVSAGGGVDGRKACRLESLKNLEHLQVCGISRLGDVSDVGEAKRLEL  346 (488)
Q Consensus       268 ~L~~L~l~~~~~~~~-lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~l  346 (488)
                      .|+||+++...+... +-.-+..+.+|+.|.+.++...+       .....+.+-.+|+.++++.+.++.+.  +....+
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD-------~I~~~iAkN~~L~~lnlsm~sG~t~n--~~~ll~  256 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDD-------PIVNTIAKNSNLVRLNLSMCSGFTEN--ALQLLL  256 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCc-------HHHHHHhccccceeeccccccccchh--HHHHHH
Confidence            356666655432211 11113445556666665555443       22334444555666666665555432  334456


Q ss_pred             ccCCCCCceeecccCchhhhhhhccccchHHHhhhCCCCCCCCEEEeccccCC---CCCchHHHhccCCcEEeecCCCCC
Q 038150          347 DKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKELEIEYYRGN---TVFPSWMTSLTNLKSLDLSSCENC  423 (488)
Q Consensus       347 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~---~~lp~~~~~l~~L~~L~l~~~~~~  423 (488)
                      .+++.|..|.++||.+....        ...+...++  ++|+.|.|+||.-.   ..+..-...+|+|.+|++++|..+
T Consensus       257 ~scs~L~~LNlsWc~l~~~~--------Vtv~V~his--e~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l  326 (419)
T KOG2120|consen  257 SSCSRLDELNLSWCFLFTEK--------VTVAVAHIS--ETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVML  326 (419)
T ss_pred             HhhhhHhhcCchHhhccchh--------hhHHHhhhc--hhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeecccccccc
Confidence            66777777777777654221        011222222  36777777775322   112222235677777777777665


Q ss_pred             CCC--CCCCCCCCcCeeeecccccceeeCccccCCCCCCCCCCCCCcccccCccccccccccc
Q 038150          424 EQL--PPLGKLQSLENLHIWRMESVKRVGDEFLGIESDHHGSSSSSSVIIAFPKLKSLSIEVL  484 (488)
Q Consensus       424 ~~~--~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~  484 (488)
                      +.-  ..+-+|+.|++|.++.|.   .++++.+ ..            .+..|.|.+|++.+|
T Consensus       327 ~~~~~~~~~kf~~L~~lSlsRCY---~i~p~~~-~~------------l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  327 KNDCFQEFFKFNYLQHLSLSRCY---DIIPETL-LE------------LNSKPSLVYLDVFGC  373 (419)
T ss_pred             CchHHHHHHhcchheeeehhhhc---CCChHHe-ee------------eccCcceEEEEeccc
Confidence            541  125667777777777776   3333322 11            456777777777765

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.67  E-value=2.2e-09  Score=95.55  Aligned_cols=42  Identities=19%  Similarity=0.245  Sum_probs=21.8

Q ss_pred             hhCCCCCCCCEEEeccccCCCCC--chHHHhccCCcEEeecCCCC
Q 038150          380 EALRPPLNLKELEIEYYRGNTVF--PSWMTSLTNLKSLDLSSCEN  422 (488)
Q Consensus       380 ~~~~~~~~L~~L~l~~~~~~~~l--p~~~~~l~~L~~L~l~~~~~  422 (488)
                      ..+..+-+|..|++++|++.. +  ...||++|.|.++.+.+|+.
T Consensus       368 SGL~KLYSLvnLDl~~N~Ie~-ldeV~~IG~LPCLE~l~L~~NPl  411 (490)
T KOG1259|consen  368 SGLRKLYSLVNLDLSSNQIEE-LDEVNHIGNLPCLETLRLTGNPL  411 (490)
T ss_pred             hhhHhhhhheeccccccchhh-HHHhcccccccHHHHHhhcCCCc
Confidence            344445555555555555543 2  22355555566555555553

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.60  E-value=8.9e-09  Score=96.37  Aligned_cols=210  Identities=16%  Similarity=0.043  Sum_probs=109.5

Q ss_pred             HhcCCccceeecCCCcccccccCCcccccccCccCchhhhhhccCcEeecCCCCCccc--CchhhccccccceeeccCCC
Q 038150          201 FRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVLPETLCELYNLEKLDISDCFNLKE--LPEGIGKLINVKHLLNRGTN  278 (488)
Q Consensus       201 ~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~lp~~i~~L~~L~~L~l~~~~~~~~--lp~~l~~L~~L~~L~l~~~~  278 (488)
                      -+++..||...|..+.      ++..+.     .  .....|++++.|||+.|-+...  +-.-...|++|+.|+++.|.
T Consensus       117 Qsn~kkL~~IsLdn~~------V~~~~~-----~--~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nr  183 (505)
T KOG3207|consen  117 QSNLKKLREISLDNYR------VEDAGI-----E--EYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNR  183 (505)
T ss_pred             hhhHHhhhheeecCcc------ccccch-----h--hhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhccccccc
Confidence            4678889999998888      553221     0  3566788899999988642222  22344677888888888887


Q ss_pred             CCCCCCCC-CCCcccccccCceeecCCCCCCCCcccCcccccCCCcccccccccccCCCChhhhhHhhcccCCCCCceee
Q 038150          279 SLRYMPVG-IGRLTGLRTLGEFHVSAGGGVDGRKACRLESLKNLEHLQVCGISRLGDVSDVGEAKRLELDKKKYLSSLTL  357 (488)
Q Consensus       279 ~~~~lp~~-i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l  357 (488)
                      +..-.-.. -.-+++|+.|.+..|.+..      .....-+...++|..|.+...+++..    .......++.|+.|+|
T Consensus       184 l~~~~~s~~~~~l~~lK~L~l~~CGls~------k~V~~~~~~fPsl~~L~L~~N~~~~~----~~~~~~i~~~L~~LdL  253 (505)
T KOG3207|consen  184 LSNFISSNTTLLLSHLKQLVLNSCGLSW------KDVQWILLTFPSLEVLYLEANEIILI----KATSTKILQTLQELDL  253 (505)
T ss_pred             ccCCccccchhhhhhhheEEeccCCCCH------HHHHHHHHhCCcHHHhhhhcccccce----ecchhhhhhHHhhccc
Confidence            43221111 1245667777776665543      11222233445555554433221110    0012223455666666


Q ss_pred             cccCchhhhhhhccccchHHHhhhCCCCCCCCEEEeccccCCCC-CchH-----HHhccCCcEEeecCCCC--CCCCCCC
Q 038150          358 WFDKEEEEEGERRKNEDNQLLLEALRPPLNLKELEIEYYRGNTV-FPSW-----MTSLTNLKSLDLSSCEN--CEQLPPL  429 (488)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-lp~~-----~~~l~~L~~L~l~~~~~--~~~~~~l  429 (488)
                      ++|++-.           .....-.+.++.|+.|.++.+.+... .|+.     ...+++|++|.+..|+.  ...+-.+
T Consensus       254 s~N~li~-----------~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l  322 (505)
T KOG3207|consen  254 SNNNLID-----------FDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHL  322 (505)
T ss_pred             cCCcccc-----------cccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchh
Confidence            6665421           11112344556666666666554431 2222     22466666666666664  2222234


Q ss_pred             CCCCCcCeeeecccc
Q 038150          430 GKLQSLENLHIWRME  444 (488)
Q Consensus       430 ~~l~~L~~L~l~~~~  444 (488)
                      ..+++|+.|.+..++
T Consensus       323 ~~l~nlk~l~~~~n~  337 (505)
T KOG3207|consen  323 RTLENLKHLRITLNY  337 (505)
T ss_pred             hccchhhhhhccccc
Confidence            445556666554443

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.59  E-value=1.2e-08  Score=86.88  Aligned_cols=106  Identities=23%  Similarity=0.296  Sum_probs=27.7

Q ss_pred             cccCcceecccccchhhhhhHHHHHh-cCCccceeecCCCcccccccCCcccccccCccCchhhhhhccCcEeecCCCCC
Q 038150          177 RVKRMRTLLINDHSLLNAAILEELFR-ELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVLPETLCELYNLEKLDISDCFN  255 (488)
Q Consensus       177 ~~~~Lr~L~l~~~~~~~~~~~~~~~~-~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~lp~~i~~L~~L~~L~l~~~~~  255 (488)
                      +..++|.|++.++ .+ . .+ +.+. .+.+|++|+|++|.      +..         + +.+..+++|++|++++|. 
T Consensus        17 n~~~~~~L~L~~n-~I-~-~I-e~L~~~l~~L~~L~Ls~N~------I~~---------l-~~l~~L~~L~~L~L~~N~-   75 (175)
T PF14580_consen   17 NPVKLRELNLRGN-QI-S-TI-ENLGATLDKLEVLDLSNNQ------ITK---------L-EGLPGLPRLKTLDLSNNR-   75 (175)
T ss_dssp             -----------------------S--TT-TT--EEE-TTS--------S------------TT----TT--EEE--SS--
T ss_pred             ccccccccccccc-cc-c-cc-cchhhhhcCCCEEECCCCC------Ccc---------c-cCccChhhhhhcccCCCC-
Confidence            4445666666665 11 1 11 2233 34566666666666      332         1 234556666666666654 


Q ss_pred             cccCchhh-ccccccceeeccCCCCCCCCC--CCCCCcccccccCceeecCC
Q 038150          256 LKELPEGI-GKLINVKHLLNRGTNSLRYMP--VGIGRLTGLRTLGEFHVSAG  304 (488)
Q Consensus       256 ~~~lp~~l-~~L~~L~~L~l~~~~~~~~lp--~~i~~L~~L~~L~l~~~~~~  304 (488)
                      ++.++..+ ..+++|++|++++|.+ ..+-  ..++.+++|+.|++.+|.++
T Consensus        76 I~~i~~~l~~~lp~L~~L~L~~N~I-~~l~~l~~L~~l~~L~~L~L~~NPv~  126 (175)
T PF14580_consen   76 ISSISEGLDKNLPNLQELYLSNNKI-SDLNELEPLSSLPKLRVLSLEGNPVC  126 (175)
T ss_dssp             --S-CHHHHHH-TT--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred             CCccccchHHhCCcCCEEECcCCcC-CChHHhHHHHcCCCcceeeccCCccc
Confidence            55554444 3466666666666653 2211  22445556666666555443

>PLN03150 hypothetical protein; Provisional

Probab=98.54  E-value=8.7e-08  Score=99.55  Aligned_cols=71  Identities=21%  Similarity=0.308  Sum_probs=35.5

Q ss_pred             cCchhhhhhccCcEeecCCCCCcccCchhhccccccceeeccCCCCCCCCCCCCCCcccccccCceeecCC
Q 038150          234 VLPETLCELYNLEKLDISDCFNLKELPEGIGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFHVSAG  304 (488)
Q Consensus       234 ~lp~~i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~  304 (488)
                      .+|..++.+++|++|+|++|...+.+|..++.+++|+.|++++|.+...+|..+++|++|++|++.+|.+.
T Consensus       433 ~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~  503 (623)
T PLN03150        433 FIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLS  503 (623)
T ss_pred             cCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCccc
Confidence            34444555555555555554433445555555555555555555544444555555555555555544443

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.49  E-value=1.1e-07  Score=80.90  Aligned_cols=81  Identities=26%  Similarity=0.261  Sum_probs=35.1

Q ss_pred             CCCCCceeecccCchhhhhhhccccchHHHhhhCCCCCCCCEEEeccccCCCCCchHH-HhccCCcEEeecCCCCCC--C
Q 038150          349 KKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKELEIEYYRGNTVFPSWM-TSLTNLKSLDLSSCENCE--Q  425 (488)
Q Consensus       349 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~lp~~~-~~l~~L~~L~l~~~~~~~--~  425 (488)
                      +.+|+.|++++|.+...              +.+..+++|+.|.+++|.+.. ++..+ ..+|+|++|++++|....  +
T Consensus        41 l~~L~~L~Ls~N~I~~l--------------~~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~L~~L~L~~N~I~~l~~  105 (175)
T PF14580_consen   41 LDKLEVLDLSNNQITKL--------------EGLPGLPRLKTLDLSNNRISS-ISEGLDKNLPNLQELYLSNNKISDLNE  105 (175)
T ss_dssp             -TT--EEE-TTS--S----------------TT----TT--EEE--SS---S--CHHHHHH-TT--EEE-TTS---SCCC
T ss_pred             hcCCCEEECCCCCCccc--------------cCccChhhhhhcccCCCCCCc-cccchHHhCCcCCEEECcCCcCCChHH
Confidence            56777888888876422              456667888888888888887 65545 368888888888887433  2


Q ss_pred             CCCCCCCCCcCeeeecccc
Q 038150          426 LPPLGKLQSLENLHIWRME  444 (488)
Q Consensus       426 ~~~l~~l~~L~~L~l~~~~  444 (488)
                      +..+..+|+|+.|++.+||
T Consensus       106 l~~L~~l~~L~~L~L~~NP  124 (175)
T PF14580_consen  106 LEPLSSLPKLRVLSLEGNP  124 (175)
T ss_dssp             CGGGGG-TT--EEE-TT-G
T ss_pred             hHHHHcCCCcceeeccCCc
Confidence            3336778888888888887

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.48  E-value=7.3e-09  Score=96.41  Aligned_cols=146  Identities=21%  Similarity=0.088  Sum_probs=81.4

Q ss_pred             CcccccccCceeecCCCCCCCCcccCccccc-CCCcccccccccccCCCChhhhhHhhcccCCCCCceeecccCchhhhh
Q 038150          289 RLTGLRTLGEFHVSAGGGVDGRKACRLESLK-NLEHLQVCGISRLGDVSDVGEAKRLELDKKKYLSSLTLWFDKEEEEEG  367 (488)
Q Consensus       289 ~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~-~L~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~  367 (488)
                      .+..||.|+..++...+      ...+..|+ +..+|+.+.+..+..+.+..  +...-.++.+|+.+++..+....+  
T Consensus       292 ~c~~lq~l~~s~~t~~~------d~~l~aLg~~~~~L~~l~l~~c~~fsd~~--ft~l~rn~~~Le~l~~e~~~~~~d--  361 (483)
T KOG4341|consen  292 GCHALQVLCYSSCTDIT------DEVLWALGQHCHNLQVLELSGCQQFSDRG--FTMLGRNCPHLERLDLEECGLITD--  361 (483)
T ss_pred             hhhHhhhhcccCCCCCc------hHHHHHHhcCCCceEEEeccccchhhhhh--hhhhhcCChhhhhhcccccceehh--
Confidence            35566666665554332      23333332 24566666665555433211  112223466777777766654322  


Q ss_pred             hhccccchHHHhhhCCCCCCCCEEEeccccCCCCC-----chHHHhccCCcEEeecCCCCCCCCC--CCCCCCCcCeeee
Q 038150          368 ERRKNEDNQLLLEALRPPLNLKELEIEYYRGNTVF-----PSWMTSLTNLKSLDLSSCENCEQLP--PLGKLQSLENLHI  440 (488)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l-----p~~~~~l~~L~~L~l~~~~~~~~~~--~l~~l~~L~~L~l  440 (488)
                              ..+.+--.+++.|+.|.++.|...++.     ...-.....|..+.+++|+...+-.  .+..+++|+.+++
T Consensus       362 --------~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l  433 (483)
T KOG4341|consen  362 --------GTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIEL  433 (483)
T ss_pred             --------hhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeee
Confidence                    233344456778888888877554322     1111245678888888888666532  2677788888888


Q ss_pred             cccccceeeCcc
Q 038150          441 WRMESVKRVGDE  452 (488)
Q Consensus       441 ~~~~~l~~~~~~  452 (488)
                      .+|..+..-+..
T Consensus       434 ~~~q~vtk~~i~  445 (483)
T KOG4341|consen  434 IDCQDVTKEAIS  445 (483)
T ss_pred             echhhhhhhhhH
Confidence            888765554433

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.42  E-value=1.4e-08  Score=90.50  Aligned_cols=183  Identities=19%  Similarity=0.101  Sum_probs=107.7

Q ss_pred             cCcEeecCCCCCcc--cCchhhccccccceeeccCCCCCCCCCCCCCCcccccccCceeecCCCCCCCCcccCc-ccccC
Q 038150          244 NLEKLDISDCFNLK--ELPEGIGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGRKACRL-ESLKN  320 (488)
Q Consensus       244 ~L~~L~l~~~~~~~--~lp~~l~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~-~~l~~  320 (488)
                      .|++|||+... ++  .+-.-+..+.+|+.|.+.++.....+...|.+-.+|+.|+++.+.--.      ...+ --+.+
T Consensus       186 Rlq~lDLS~s~-it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t------~n~~~ll~~s  258 (419)
T KOG2120|consen  186 RLQHLDLSNSV-ITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFT------ENALQLLLSS  258 (419)
T ss_pred             hhHHhhcchhh-eeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccc------hhHHHHHHHh
Confidence            46777777632 32  233344666777777777776555555556667777777776654322      1111 12456


Q ss_pred             CCcccccccccccCCCChhhhhHhhcccCCCCCceeecccCchhhhhhhccccchHHHhhhCCCCCCCCEEEeccccCCC
Q 038150          321 LEHLQVCGISRLGDVSDVGEAKRLELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKELEIEYYRGNT  400 (488)
Q Consensus       321 L~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  400 (488)
                      ++.|..|++.|+.-..+...+....+  -++|..|.++++.-.-.         ...+.--...+++|.+|+|+.|....
T Consensus       259 cs~L~~LNlsWc~l~~~~Vtv~V~hi--se~l~~LNlsG~rrnl~---------~sh~~tL~~rcp~l~~LDLSD~v~l~  327 (419)
T KOG2120|consen  259 CSRLDELNLSWCFLFTEKVTVAVAHI--SETLTQLNLSGYRRNLQ---------KSHLSTLVRRCPNLVHLDLSDSVMLK  327 (419)
T ss_pred             hhhHhhcCchHhhccchhhhHHHhhh--chhhhhhhhhhhHhhhh---------hhHHHHHHHhCCceeeeccccccccC
Confidence            66777777777765444333333322  35678888887752100         01112223457888888888865442


Q ss_pred             -CCchHHHhccCCcEEeecCCCCCCC--CCCCCCCCCcCeeeecccc
Q 038150          401 -VFPSWMTSLTNLKSLDLSSCENCEQ--LPPLGKLQSLENLHIWRME  444 (488)
Q Consensus       401 -~lp~~~~~l~~L~~L~l~~~~~~~~--~~~l~~l~~L~~L~l~~~~  444 (488)
                       ..-..+..|+.|++|.++.|.....  +..+...|+|.+|++.+|-
T Consensus       328 ~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~v  374 (419)
T KOG2120|consen  328 NDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCV  374 (419)
T ss_pred             chHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEecccc
Confidence             2333455788888888888874432  2236778888888888773

>PLN03150 hypothetical protein; Provisional

Probab=98.39  E-value=4.8e-07  Score=94.05  Aligned_cols=107  Identities=19%  Similarity=0.266  Sum_probs=90.9

Q ss_pred             CcceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccCccCchhhhhhccCcEeecCCCCCcccC
Q 038150          180 RMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVLPETLCELYNLEKLDISDCFNLKEL  259 (488)
Q Consensus       180 ~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~lp~~i~~L~~L~~L~l~~~~~~~~l  259 (488)
                      .++.|++.++ .+.+ .+|..+.++++|+.|+|++|.+     .+         .+|..++.+++|++|++++|.....+
T Consensus       419 ~v~~L~L~~n-~L~g-~ip~~i~~L~~L~~L~Ls~N~l-----~g---------~iP~~~~~l~~L~~LdLs~N~lsg~i  482 (623)
T PLN03150        419 FIDGLGLDNQ-GLRG-FIPNDISKLRHLQSINLSGNSI-----RG---------NIPPSLGSITSLEVLDLSYNSFNGSI  482 (623)
T ss_pred             EEEEEECCCC-Cccc-cCCHHHhCCCCCCEEECCCCcc-----cC---------cCChHHhCCCCCCEEECCCCCCCCCC
Confidence            4788999987 5665 6777899999999999999986     55         67888999999999999999877889


Q ss_pred             chhhccccccceeeccCCCCCCCCCCCCCCc-ccccccCceeec
Q 038150          260 PEGIGKLINVKHLLNRGTNSLRYMPVGIGRL-TGLRTLGEFHVS  302 (488)
Q Consensus       260 p~~l~~L~~L~~L~l~~~~~~~~lp~~i~~L-~~L~~L~l~~~~  302 (488)
                      |..++++++|++|++++|.+.+.+|..++.+ .++..+++.+|.
T Consensus       483 P~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~  526 (623)
T PLN03150        483 PESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNA  526 (623)
T ss_pred             chHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCc
Confidence            9999999999999999999888999887754 466677766664

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.37  E-value=5.9e-08  Score=90.51  Aligned_cols=89  Identities=18%  Similarity=0.137  Sum_probs=44.1

Q ss_pred             cceeeEEEEecCCcC---ccccccccCcceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccCc
Q 038150          157 KVRHLMLIFSKAASL---PISTLRVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKL  233 (488)
Q Consensus       157 ~vr~l~l~~~~~~~~---~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l  233 (488)
                      .++.+++.++.....   -....+++++..|.+.++..++....-..-..++.|++|+|..|..     +.+.       
T Consensus       139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~-----iT~~-------  206 (483)
T KOG4341|consen  139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSS-----ITDV-------  206 (483)
T ss_pred             ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccch-----hHHH-------
Confidence            344555555544221   1123456666666666665555534444444566666666666542     2210       


Q ss_pred             cCchhhhhhccCcEeecCCCCCcc
Q 038150          234 VLPETLCELYNLEKLDISDCFNLK  257 (488)
Q Consensus       234 ~lp~~i~~L~~L~~L~l~~~~~~~  257 (488)
                      .+-.-...+++|++|+++.|..+.
T Consensus       207 ~Lk~la~gC~kL~~lNlSwc~qi~  230 (483)
T KOG4341|consen  207 SLKYLAEGCRKLKYLNLSWCPQIS  230 (483)
T ss_pred             HHHHHHHhhhhHHHhhhccCchhh
Confidence            111122345666666666665443

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.09  E-value=7e-07  Score=88.63  Aligned_cols=108  Identities=21%  Similarity=0.266  Sum_probs=60.2

Q ss_pred             cccccCcceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccCccCchhhhhhccCcEeecCCCC
Q 038150          175 TLRVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVLPETLCELYNLEKLDISDCF  254 (488)
Q Consensus       175 ~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~lp~~i~~L~~L~~L~l~~~~  254 (488)
                      +..+.++..|++.+| .+..  +...+..+++|++|++++|.      +.++          ..+..+..|+.|++.+|.
T Consensus        91 l~~~~~l~~l~l~~n-~i~~--i~~~l~~~~~L~~L~ls~N~------I~~i----------~~l~~l~~L~~L~l~~N~  151 (414)
T KOG0531|consen   91 LSKLKSLEALDLYDN-KIEK--IENLLSSLVNLQVLDLSFNK------ITKL----------EGLSTLTLLKELNLSGNL  151 (414)
T ss_pred             cccccceeeeecccc-chhh--cccchhhhhcchheeccccc------cccc----------cchhhccchhhheeccCc
Confidence            455666677777665 4432  32224566677777777776      3322          345556666777777754


Q ss_pred             CcccCchhhccccccceeeccCCCCCCCCCCC-CCCcccccccCceeecCC
Q 038150          255 NLKELPEGIGKLINVKHLLNRGTNSLRYMPVG-IGRLTGLRTLGEFHVSAG  304 (488)
Q Consensus       255 ~~~~lp~~l~~L~~L~~L~l~~~~~~~~lp~~-i~~L~~L~~L~l~~~~~~  304 (488)
                       +..+ ..+..+++|+.+++++|.. ..+... +..+.+|+.+.+..+.+.
T Consensus       152 -i~~~-~~~~~l~~L~~l~l~~n~i-~~ie~~~~~~~~~l~~l~l~~n~i~  199 (414)
T KOG0531|consen  152 -ISDI-SGLESLKSLKLLDLSYNRI-VDIENDELSELISLEELDLGGNSIR  199 (414)
T ss_pred             -chhc-cCCccchhhhcccCCcchh-hhhhhhhhhhccchHHHhccCCchh
Confidence             4444 2445566666677766653 222221 355666666666655443

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.04  E-value=3.1e-06  Score=58.89  Aligned_cols=59  Identities=25%  Similarity=0.359  Sum_probs=41.5

Q ss_pred             CCCCEEEeccccCCCCCchHHHhccCCcEEeecCCCCCCCCCC-CCCCCCcCeeeecccc
Q 038150          386 LNLKELEIEYYRGNTVFPSWMTSLTNLKSLDLSSCENCEQLPP-LGKLQSLENLHIWRME  444 (488)
Q Consensus       386 ~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~-l~~l~~L~~L~l~~~~  444 (488)
                      ++|+.|++++|.+...-+.++..+++|++|++++|....-.+. +..+++|++|++++|+
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            4677888888877762335677788888888887775433333 7778888888887775

...

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.01  E-value=3.9e-06  Score=87.21  Aligned_cols=138  Identities=25%  Similarity=0.171  Sum_probs=71.4

Q ss_pred             CccceeecCCCcccccccCCcccccccCccCchhhh-hhccCcEeecCCCCCc-ccCchhhccccccceeeccCCCCCCC
Q 038150          205 TSLRALDFGGSYHSTRLLTPEVPRNIEKLVLPETLC-ELYNLEKLDISDCFNL-KELPEGIGKLINVKHLLNRGTNSLRY  282 (488)
Q Consensus       205 ~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~lp~~i~-~L~~L~~L~l~~~~~~-~~lp~~l~~L~~L~~L~l~~~~~~~~  282 (488)
                      .+|++||++|...    +..         .-|..+| .||+|+.|.+++-... .++-.-..++++|..|++++++ +..
T Consensus       122 ~nL~~LdI~G~~~----~s~---------~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~Tn-I~n  187 (699)
T KOG3665|consen  122 QNLQHLDISGSEL----FSN---------GWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTN-ISN  187 (699)
T ss_pred             HhhhhcCccccch----hhc---------cHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCC-ccC
Confidence            4566777766542    111         2233344 3566777766663221 1222334566677777777765 222


Q ss_pred             CCCCCCCcccccccCceeecCCCCCCCCcccCcccccCCCcccccccccccCCCCh--hhhhHhhcccCCCCCceeeccc
Q 038150          283 MPVGIGRLTGLRTLGEFHVSAGGGVDGRKACRLESLKNLEHLQVCGISRLGDVSDV--GEAKRLELDKKKYLSSLTLWFD  360 (488)
Q Consensus       283 lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~--~~~~~~~l~~l~~L~~L~l~~~  360 (488)
                      + .++++|++|++|.+.+-.+..      ...+.++-+|++|+.|+++.-......  .....+.-..+++|+.|+.++.
T Consensus       188 l-~GIS~LknLq~L~mrnLe~e~------~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgT  260 (699)
T KOG3665|consen  188 L-SGISRLKNLQVLSMRNLEFES------YQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGT  260 (699)
T ss_pred             c-HHHhccccHHHHhccCCCCCc------hhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCc
Confidence            2 566777777777665554443      334555666666666666544332221  1122233334566666666665


Q ss_pred             Cch
Q 038150          361 KEE  363 (488)
Q Consensus       361 ~~~  363 (488)
                      .+.
T Consensus       261 di~  263 (699)
T KOG3665|consen  261 DIN  263 (699)
T ss_pred             chh
Confidence            543

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=97.98  E-value=5.9e-06  Score=57.46  Aligned_cols=59  Identities=31%  Similarity=0.484  Sum_probs=34.5

Q ss_pred             CccceeecCCCcccccccCCcccccccCccCchhhhhhccCcEeecCCCCCcccCch-hhccccccceeeccCCC
Q 038150          205 TSLRALDFGGSYHSTRLLTPEVPRNIEKLVLPETLCELYNLEKLDISDCFNLKELPE-GIGKLINVKHLLNRGTN  278 (488)
Q Consensus       205 ~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~lp~~i~~L~~L~~L~l~~~~~~~~lp~-~l~~L~~L~~L~l~~~~  278 (488)
                      ++|++|++++|.      +..+|.        ..+.++++|++|++++|. +..+|. .+..+++|++|++++|.
T Consensus         1 p~L~~L~l~~n~------l~~i~~--------~~f~~l~~L~~L~l~~N~-l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    1 PNLESLDLSNNK------LTEIPP--------DSFSNLPNLETLDLSNNN-LTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TTESEEEETSST------ESEECT--------TTTTTGTTESEEEETSSS-ESEEETTTTTTSTTESEEEETSSS
T ss_pred             CcCcEEECCCCC------CCccCH--------HHHcCCCCCCEeEccCCc-cCccCHHHHcCCCCCCEEeCcCCc
Confidence            356677777766      442221        245566677777777654 444443 45666777777766654

...

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.94  E-value=4.5e-06  Score=73.82  Aligned_cols=248  Identities=19%  Similarity=0.123  Sum_probs=153.0

Q ss_pred             ccccCcceecccccchhhh---hhHHHHHhcCCccceeecCCCcccccccCCcccc----cccCccCchhhhhhccCcEe
Q 038150          176 LRVKRMRTLLINDHSLLNA---AILEELFRELTSLRALDFGGSYHSTRLLTPEVPR----NIEKLVLPETLCELYNLEKL  248 (488)
Q Consensus       176 ~~~~~Lr~L~l~~~~~~~~---~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~----~i~~l~lp~~i~~L~~L~~L  248 (488)
                      ..+..+..++++||. ++.   ..+...+.+-.+|++.+++.-.      .+..-+    .+.  .+...+-++++|++.
T Consensus        27 ~~~d~~~evdLSGNt-igtEA~e~l~~~ia~~~~L~vvnfsd~f------tgr~kde~~~~L~--~Ll~aLlkcp~l~~v   97 (388)
T COG5238          27 EMMDELVEVDLSGNT-IGTEAMEELCNVIANVRNLRVVNFSDAF------TGRDKDELYSNLV--MLLKALLKCPRLQKV   97 (388)
T ss_pred             HhhcceeEEeccCCc-ccHHHHHHHHHHHhhhcceeEeehhhhh------hcccHHHHHHHHH--HHHHHHhcCCcceee
Confidence            346788899999983 332   1344456677889999988764      443222    111  233445678999999


Q ss_pred             ecCCCCCcccCchh----hccccccceeeccCCCCCCCCCC-CC-------------CCcccccccCceeecCCCCCCCC
Q 038150          249 DISDCFNLKELPEG----IGKLINVKHLLNRGTNSLRYMPV-GI-------------GRLTGLRTLGEFHVSAGGGVDGR  310 (488)
Q Consensus       249 ~l~~~~~~~~lp~~----l~~L~~L~~L~l~~~~~~~~lp~-~i-------------~~L~~L~~L~l~~~~~~~~~~~~  310 (488)
                      +|+.|.+....|+.    +++-+.|.||.+++|.. +.+.. .|             ..-+.|++.....|++.++.   
T Consensus        98 ~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGl-Gp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs---  173 (388)
T COG5238          98 DLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGL-GPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGS---  173 (388)
T ss_pred             eccccccCcccchHHHHHHhcCCCceeEEeecCCC-CccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCc---
Confidence            99998876666654    45668899999999874 22221 12             23466777776666655421   


Q ss_pred             cccCcccccCCCcccccccccccCCCC-hhhhhHhhcccCCCCCceeecccCchhhhhhhccccchHHHhhhCCCCCCCC
Q 038150          311 KACRLESLKNLEHLQVCGISRLGDVSD-VGEAKRLELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLK  389 (488)
Q Consensus       311 ~~~~~~~l~~L~~L~~L~~~~~~~~~~-~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~  389 (488)
                      ...+...+..-..|+.+.+...+.-+. ........+..+++|+.|++..|.++...        +..+...++..+.|+
T Consensus       174 ~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~g--------S~~La~al~~W~~lr  245 (388)
T COG5238         174 KELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEG--------SRYLADALCEWNLLR  245 (388)
T ss_pred             HHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhh--------HHHHHHHhcccchhh
Confidence            111112222334566655544333222 12233345566788999999988776432        255556667777889


Q ss_pred             EEEeccccCCCCCchH----HH--hccCCcEEeecCCCCCCC------CCC--CCCCCCcCeeeecccc
Q 038150          390 ELEIEYYRGNTVFPSW----MT--SLTNLKSLDLSSCENCEQ------LPP--LGKLQSLENLHIWRME  444 (488)
Q Consensus       390 ~L~l~~~~~~~~lp~~----~~--~l~~L~~L~l~~~~~~~~------~~~--l~~l~~L~~L~l~~~~  444 (488)
                      .|.+..|-.+..-...    +.  ..|+|..|...+|..-..      ++.  -+++|-|..|.+.+|.
T Consensus       246 EL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr  314 (388)
T COG5238         246 ELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNR  314 (388)
T ss_pred             hccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCc
Confidence            9999888665421111    11  468899888887765443      222  3568899999988776

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.94  E-value=1.1e-05  Score=72.29  Aligned_cols=206  Identities=15%  Similarity=0.125  Sum_probs=103.7

Q ss_pred             ccccCcceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccCccCchhhhhhccCcEeecCCCCC
Q 038150          176 LRVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVLPETLCELYNLEKLDISDCFN  255 (488)
Q Consensus       176 ~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~lp~~i~~L~~L~~L~l~~~~~  255 (488)
                      ..+.+++.|++.+|..-++..+...+.+++.|++|+++.|.+...  ++         .+|   -.+.+|++|-|.+.. 
T Consensus        68 ~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~--I~---------~lp---~p~~nl~~lVLNgT~-  132 (418)
T KOG2982|consen   68 SSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSD--IK---------SLP---LPLKNLRVLVLNGTG-  132 (418)
T ss_pred             HHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCc--cc---------cCc---ccccceEEEEEcCCC-
Confidence            356788888888873333334555677888888888888874211  22         222   234567777777632 


Q ss_pred             cc--cCchhhccccccceeeccCCCCCCCC--CCCCCCcc-cccccCceeecCCCCCCCCcccCcccccCCCcccccccc
Q 038150          256 LK--ELPEGIGKLINVKHLLNRGTNSLRYM--PVGIGRLT-GLRTLGEFHVSAGGGVDGRKACRLESLKNLEHLQVCGIS  330 (488)
Q Consensus       256 ~~--~lp~~l~~L~~L~~L~l~~~~~~~~l--p~~i~~L~-~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~  330 (488)
                      +.  .....+..++.++.|+++.|......  ...+...+ .+++|+...|                      +..++.+
T Consensus       133 L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c----------------------~~~~w~~  190 (418)
T KOG2982|consen  133 LSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPC----------------------LEQLWLN  190 (418)
T ss_pred             CChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCc----------------------HHHHHHH
Confidence            22  23334455666666666655311000  01111111 2233322222                      1111111


Q ss_pred             cccCCCChhhhhHhhcccCCCCCceeecccCchhhhhhhccccchHHHhhhCCCCCCCCEEEeccccCCCCC--chHHHh
Q 038150          331 RLGDVSDVGEAKRLELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKELEIEYYRGNTVF--PSWMTS  408 (488)
Q Consensus       331 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l--p~~~~~  408 (488)
                      .           ...-.-.+++..+-+..+.+..           ........+++.+--|.|+.+.+.. +  ...+..
T Consensus       191 ~-----------~~l~r~Fpnv~sv~v~e~PlK~-----------~s~ek~se~~p~~~~LnL~~~~ids-wasvD~Ln~  247 (418)
T KOG2982|consen  191 K-----------NKLSRIFPNVNSVFVCEGPLKT-----------ESSEKGSEPFPSLSCLNLGANNIDS-WASVDALNG  247 (418)
T ss_pred             H-----------HhHHhhcccchheeeecCcccc-----------hhhcccCCCCCcchhhhhccccccc-HHHHHHHcC
Confidence            0           0111123445555555554321           2222445555666666666655443 2  223456


Q ss_pred             ccCCcEEeecCCCCCCCCCC-------CCCCCCcCeeeec
Q 038150          409 LTNLKSLDLSSCENCEQLPP-------LGKLQSLENLHIW  441 (488)
Q Consensus       409 l~~L~~L~l~~~~~~~~~~~-------l~~l~~L~~L~l~  441 (488)
                      ++.|+.|.+++++.+..+..       +++|++++.|+=+
T Consensus       248 f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGs  287 (418)
T KOG2982|consen  248 FPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGS  287 (418)
T ss_pred             CchhheeeccCCcccccccCCcceEEEEeeccceEEecCc
Confidence            78888888888876665431       5677787777654

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.88  E-value=1.4e-06  Score=86.86  Aligned_cols=109  Identities=24%  Similarity=0.215  Sum_probs=71.6

Q ss_pred             HHHHHhcCCccceeecCCCcccccccCCcccccccCccCchhhhhhccCcEeecCCCCCcccCchhhccccccceeeccC
Q 038150          197 LEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVLPETLCELYNLEKLDISDCFNLKELPEGIGKLINVKHLLNRG  276 (488)
Q Consensus       197 ~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~lp~~i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~L~l~~  276 (488)
                      +.+.+.-++.|+.|||++|.+     .           --..+..|++|++|||++|. +..+|.--..-.+|+.|.+++
T Consensus       179 mD~SLqll~ale~LnLshNk~-----~-----------~v~~Lr~l~~LkhLDlsyN~-L~~vp~l~~~gc~L~~L~lrn  241 (1096)
T KOG1859|consen  179 MDESLQLLPALESLNLSHNKF-----T-----------KVDNLRRLPKLKHLDLSYNC-LRHVPQLSMVGCKLQLLNLRN  241 (1096)
T ss_pred             HHHHHHHHHHhhhhccchhhh-----h-----------hhHHHHhcccccccccccch-hccccccchhhhhheeeeecc
Confidence            455566778888888888885     2           22367778888888888864 666664221123488888888


Q ss_pred             CCCCCCCCCCCCCcccccccCceeecCCCCCCCCcccCcccccCCCcccccccc
Q 038150          277 TNSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGRKACRLESLKNLEHLQVCGIS  330 (488)
Q Consensus       277 ~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~  330 (488)
                      |.. ..+ .+|.+|.+|+.|+++.|-+.+      ...+.-+..|..|+.|++.
T Consensus       242 N~l-~tL-~gie~LksL~~LDlsyNll~~------hseL~pLwsLs~L~~L~Le  287 (1096)
T KOG1859|consen  242 NAL-TTL-RGIENLKSLYGLDLSYNLLSE------HSELEPLWSLSSLIVLWLE  287 (1096)
T ss_pred             cHH-Hhh-hhHHhhhhhhccchhHhhhhc------chhhhHHHHHHHHHHHhhc
Confidence            763 332 567888888888888876554      3334444555556666553

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.87  E-value=6.9e-05  Score=72.02  Aligned_cols=66  Identities=24%  Similarity=0.360  Sum_probs=48.5

Q ss_pred             HhcCCccceeecCCCcccccccCCcccccccCccCchhhhhhccCcEeecCCCCCcccCchhhccccccceeeccCCCCC
Q 038150          201 FRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVLPETLCELYNLEKLDISDCFNLKELPEGIGKLINVKHLLNRGTNSL  280 (488)
Q Consensus       201 ~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~lp~~i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~L~l~~~~~~  280 (488)
                      +..+.+++.|++++|.      +..+|      .+|      .+|+.|.+++|..+..+|..+.  .+|++|.+++|..+
T Consensus        48 ~~~~~~l~~L~Is~c~------L~sLP------~LP------~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L  107 (426)
T PRK15386         48 IEEARASGRLYIKDCD------IESLP------VLP------NELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEI  107 (426)
T ss_pred             HHHhcCCCEEEeCCCC------CcccC------CCC------CCCcEEEccCCCCcccCCchhh--hhhhheEccCcccc
Confidence            5667889999999997      66443      122      3588999999888888886553  68899999988556


Q ss_pred             CCCCCC
Q 038150          281 RYMPVG  286 (488)
Q Consensus       281 ~~lp~~  286 (488)
                      ..+|..
T Consensus       108 ~sLP~s  113 (426)
T PRK15386        108 SGLPES  113 (426)
T ss_pred             cccccc
Confidence            666653

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.86  E-value=6e-06  Score=85.83  Aligned_cols=109  Identities=25%  Similarity=0.272  Sum_probs=53.1

Q ss_pred             cCcceecccccchhhhhhHHHHH-hcCCccceeecCCCcccccccCCcccccccCccCchhhhhhccCcEeecCCCCCcc
Q 038150          179 KRMRTLLINDHSLLNAAILEELF-RELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVLPETLCELYNLEKLDISDCFNLK  257 (488)
Q Consensus       179 ~~Lr~L~l~~~~~~~~~~~~~~~-~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~lp~~i~~L~~L~~L~l~~~~~~~  257 (488)
                      .+|++|++.|...+.. .++..+ ..||.||.|.+++-.+     ..+        .+-.-..++++|..||++++ .+.
T Consensus       122 ~nL~~LdI~G~~~~s~-~W~~kig~~LPsL~sL~i~~~~~-----~~~--------dF~~lc~sFpNL~sLDIS~T-nI~  186 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSN-GWPKKIGTMLPSLRSLVISGRQF-----DND--------DFSQLCASFPNLRSLDISGT-NIS  186 (699)
T ss_pred             HhhhhcCccccchhhc-cHHHHHhhhCcccceEEecCcee-----cch--------hHHHHhhccCccceeecCCC-Ccc
Confidence            5566666666544443 333322 3356666666665443     110        11112235566666666663 355


Q ss_pred             cCchhhccccccceeeccCCCCCC-CCCCCCCCcccccccCceeecC
Q 038150          258 ELPEGIGKLINVKHLLNRGTNSLR-YMPVGIGRLTGLRTLGEFHVSA  303 (488)
Q Consensus       258 ~lp~~l~~L~~L~~L~l~~~~~~~-~lp~~i~~L~~L~~L~l~~~~~  303 (488)
                      .+ .+++.|++|+.|.+.+-.+.. ..-..+.+|++|+.|+++....
T Consensus       187 nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~  232 (699)
T KOG3665|consen  187 NL-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKN  232 (699)
T ss_pred             Cc-HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeecccccc
Confidence            55 556666666666655533221 0112345566666666655443

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.81  E-value=8.9e-05  Score=71.27  Aligned_cols=138  Identities=20%  Similarity=0.235  Sum_probs=81.2

Q ss_pred             hhhhccCcEeecCCCCCcccCchhhccccccceeeccCCCCCCCCCCCCCCcccccccCceeecCCCCCCCCcccCcccc
Q 038150          239 LCELYNLEKLDISDCFNLKELPEGIGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGRKACRLESL  318 (488)
Q Consensus       239 i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l  318 (488)
                      +..+.++++|++++| .+..+| .  -..+|++|.+++|.....+|..+  .++|++|.+.+|.....    .+.     
T Consensus        48 ~~~~~~l~~L~Is~c-~L~sLP-~--LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~s----LP~-----  112 (426)
T PRK15386         48 IEEARASGRLYIKDC-DIESLP-V--LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISG----LPE-----  112 (426)
T ss_pred             HHHhcCCCEEEeCCC-CCcccC-C--CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccc----ccc-----
Confidence            456799999999998 588888 2  23579999999988777777655  36899999987632210    121     


Q ss_pred             cCCCcccccccc--cccCCCChhhhhHhhcccC-CCCCceeecccCchhhhhhhccccchHHHhhhCCCCCCCCEEEecc
Q 038150          319 KNLEHLQVCGIS--RLGDVSDVGEAKRLELDKK-KYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKELEIEY  395 (488)
Q Consensus       319 ~~L~~L~~L~~~--~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~  395 (488)
                          +|..|.+.  .+..+           ..+ ++|+.|.+.+++....          ..++.  .-+++|+.|.+++
T Consensus       113 ----sLe~L~L~~n~~~~L-----------~~LPssLk~L~I~~~n~~~~----------~~lp~--~LPsSLk~L~Is~  165 (426)
T PRK15386        113 ----SVRSLEIKGSATDSI-----------KNVPNGLTSLSINSYNPENQ----------ARIDN--LISPSLKTLSLTG  165 (426)
T ss_pred             ----ccceEEeCCCCCccc-----------ccCcchHhheeccccccccc----------ccccc--ccCCcccEEEecC
Confidence                23333332  11111           111 3456666643321000          11111  1246888888888


Q ss_pred             ccCCCCCchHHHhccCCcEEeecCCC
Q 038150          396 YRGNTVFPSWMTSLTNLKSLDLSSCE  421 (488)
Q Consensus       396 ~~~~~~lp~~~~~l~~L~~L~l~~~~  421 (488)
                      |.... +|..+.  .+|+.|+++.+.
T Consensus       166 c~~i~-LP~~LP--~SLk~L~ls~n~  188 (426)
T PRK15386        166 CSNII-LPEKLP--ESLQSITLHIEQ  188 (426)
T ss_pred             CCccc-Cccccc--ccCcEEEecccc
Confidence            77654 554322  588888887653

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=97.79  E-value=2.2e-06  Score=85.10  Aligned_cols=215  Identities=27%  Similarity=0.266  Sum_probs=129.7

Q ss_pred             cccCcceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccCccCchhhhhhccCcEeecCCCCCc
Q 038150          177 RVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVLPETLCELYNLEKLDISDCFNL  256 (488)
Q Consensus       177 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~lp~~i~~L~~L~~L~l~~~~~~  256 (488)
                      .+..+..+.+..+ .+..  ....+..+..|.+|++..|.      +.         .+...+..+++|++|++++|. +
T Consensus        70 ~l~~l~~l~l~~n-~i~~--~~~~l~~~~~l~~l~l~~n~------i~---------~i~~~l~~~~~L~~L~ls~N~-I  130 (414)
T KOG0531|consen   70 SLTSLKELNLRQN-LIAK--ILNHLSKLKSLEALDLYDNK------IE---------KIENLLSSLVNLQVLDLSFNK-I  130 (414)
T ss_pred             HhHhHHhhccchh-hhhh--hhcccccccceeeeeccccc------hh---------hcccchhhhhcchheeccccc-c
Confidence            4556666666664 4432  23336788889999998888      44         233337788899999999964 6


Q ss_pred             ccCchhhccccccceeeccCCCCCCCCCCCCCCcccccccCceeecCCCCCCCCcccCccc--ccCCCcccccccccccC
Q 038150          257 KELPEGIGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGRKACRLES--LKNLEHLQVCGISRLGD  334 (488)
Q Consensus       257 ~~lp~~l~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~--l~~L~~L~~L~~~~~~~  334 (488)
                      +.+ .++..++.|+.|++.+|.+ ..+ .++..+++|+.+++.++.+..         +..  +..+.+++.+.+.....
T Consensus       131 ~~i-~~l~~l~~L~~L~l~~N~i-~~~-~~~~~l~~L~~l~l~~n~i~~---------ie~~~~~~~~~l~~l~l~~n~i  198 (414)
T KOG0531|consen  131 TKL-EGLSTLTLLKELNLSGNLI-SDI-SGLESLKSLKLLDLSYNRIVD---------IENDELSELISLEELDLGGNSI  198 (414)
T ss_pred             ccc-cchhhccchhhheeccCcc-hhc-cCCccchhhhcccCCcchhhh---------hhhhhhhhccchHHHhccCCch
Confidence            666 4677788899999998873 333 456668888888888887654         222  34555555544432221


Q ss_pred             CCChhhhhHhhcccCCCCCceeecccCchhhhhhhccccchHHHhhhCCCCCC--CCEEEeccccCCCCCchHHHhccCC
Q 038150          335 VSDVGEAKRLELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLN--LKELEIEYYRGNTVFPSWMTSLTNL  412 (488)
Q Consensus       335 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--L~~L~l~~~~~~~~lp~~~~~l~~L  412 (488)
                      ..      ...+..+..+..+++..|.+...              ..+..+..  |+.++++++.+.. .+..+..+.++
T Consensus       199 ~~------i~~~~~~~~l~~~~l~~n~i~~~--------------~~l~~~~~~~L~~l~l~~n~i~~-~~~~~~~~~~l  257 (414)
T KOG0531|consen  199 RE------IEGLDLLKKLVLLSLLDNKISKL--------------EGLNELVMLHLRELYLSGNRISR-SPEGLENLKNL  257 (414)
T ss_pred             hc------ccchHHHHHHHHhhcccccceec--------------cCcccchhHHHHHHhcccCcccc-ccccccccccc
Confidence            11      12223334444445555554311              22222333  8888888888876 54556677888


Q ss_pred             cEEeecCCCCCCCCCCCCCCCCcCeeeecccc
Q 038150          413 KSLDLSSCENCEQLPPLGKLQSLENLHIWRME  444 (488)
Q Consensus       413 ~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~  444 (488)
                      ..|++.++.... ...+...+.+..+....++
T Consensus       258 ~~l~~~~n~~~~-~~~~~~~~~~~~~~~~~~~  288 (414)
T KOG0531|consen  258 PVLDLSSNRISN-LEGLERLPKLSELWLNDNK  288 (414)
T ss_pred             cccchhhccccc-cccccccchHHHhccCcch
Confidence            888888776322 2224444555555555444

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.64  E-value=1.8e-06  Score=86.19  Aligned_cols=17  Identities=29%  Similarity=0.389  Sum_probs=9.9

Q ss_pred             HhcCCccceeecCCCcc
Q 038150          201 FRELTSLRALDFGGSYH  217 (488)
Q Consensus       201 ~~~l~~Lr~L~Ls~~~~  217 (488)
                      +..+..||+|.|.+|.+
T Consensus       105 ifpF~sLr~LElrg~~L  121 (1096)
T KOG1859|consen  105 IFPFRSLRVLELRGCDL  121 (1096)
T ss_pred             eccccceeeEEecCcch
Confidence            44555666666666653

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.57  E-value=7.3e-05  Score=47.67  Aligned_cols=19  Identities=47%  Similarity=0.702  Sum_probs=8.8

Q ss_pred             CchhhhhhccCcEeecCCC
Q 038150          235 LPETLCELYNLEKLDISDC  253 (488)
Q Consensus       235 lp~~i~~L~~L~~L~l~~~  253 (488)
                      +|..+++|++|++|++++|
T Consensus        16 l~~~l~~l~~L~~L~l~~N   34 (44)
T PF12799_consen   16 LPPELSNLPNLETLNLSNN   34 (44)
T ss_dssp             HGGHGTTCTTSSEEEETSS
T ss_pred             cCchHhCCCCCCEEEecCC
Confidence            3333444444444444443

...

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.56  E-value=8.4e-05  Score=66.88  Aligned_cols=190  Identities=16%  Similarity=0.047  Sum_probs=110.6

Q ss_pred             hcCCccceeecCCCcccccccCCcccccccCccCchhhhhhccCcEeecCCCCCcc---cCchhhccccccceeeccCCC
Q 038150          202 RELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVLPETLCELYNLEKLDISDCFNLK---ELPEGIGKLINVKHLLNRGTN  278 (488)
Q Consensus       202 ~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~lp~~i~~L~~L~~L~l~~~~~~~---~lp~~l~~L~~L~~L~l~~~~  278 (488)
                      ..+..++.|||.+|.+      .+..      ++-.-+.+|++|++|+++.|....   .+|   .-+.+|+.|-+.++.
T Consensus        68 ~~~~~v~elDL~~N~i------SdWs------eI~~ile~lP~l~~LNls~N~L~s~I~~lp---~p~~nl~~lVLNgT~  132 (418)
T KOG2982|consen   68 SSVTDVKELDLTGNLI------SDWS------EIGAILEQLPALTTLNLSCNSLSSDIKSLP---LPLKNLRVLVLNGTG  132 (418)
T ss_pred             HHhhhhhhhhcccchh------ccHH------HHHHHHhcCccceEeeccCCcCCCccccCc---ccccceEEEEEcCCC
Confidence            4578899999999984      2110      111223478999999999976322   233   345788888888766


Q ss_pred             CCCC-CCCCCCCcccccccCceeecCCCCCCCCcccCcccccCCCcccccccccccCCCChhhhhHhhcccCCCCCceee
Q 038150          279 SLRY-MPVGIGRLTGLRTLGEFHVSAGGGVDGRKACRLESLKNLEHLQVCGISRLGDVSDVGEAKRLELDKKKYLSSLTL  357 (488)
Q Consensus       279 ~~~~-lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l  357 (488)
                      .... ....+..++.++.|+++.|....                     +.+..-...+ .          .+.+..|+.
T Consensus       133 L~w~~~~s~l~~lP~vtelHmS~N~~rq---------------------~n~Dd~c~e~-~----------s~~v~tlh~  180 (418)
T KOG2982|consen  133 LSWTQSTSSLDDLPKVTELHMSDNSLRQ---------------------LNLDDNCIED-W----------STEVLTLHQ  180 (418)
T ss_pred             CChhhhhhhhhcchhhhhhhhccchhhh---------------------hccccccccc-c----------chhhhhhhc
Confidence            4322 22346778888888887774321                     1111000000 0          012333333


Q ss_pred             cccCchhhhhhhccccchHHHhhhCCCCCCCCEEEeccccCCCCCch--HHHhccCCcEEeecCCCCCC--CCCCCCCCC
Q 038150          358 WFDKEEEEEGERRKNEDNQLLLEALRPPLNLKELEIEYYRGNTVFPS--WMTSLTNLKSLDLSSCENCE--QLPPLGKLQ  433 (488)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~lp~--~~~~l~~L~~L~l~~~~~~~--~~~~l~~l~  433 (488)
                      ..|.....          .....-..-++|+..+.+..|.+.+ ...  ....+|.+.-|.++.+.+-.  .+..+.++|
T Consensus       181 ~~c~~~~w----------~~~~~l~r~Fpnv~sv~v~e~PlK~-~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~  249 (418)
T KOG2982|consen  181 LPCLEQLW----------LNKNKLSRIFPNVNSVFVCEGPLKT-ESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFP  249 (418)
T ss_pred             CCcHHHHH----------HHHHhHHhhcccchheeeecCcccc-hhhcccCCCCCcchhhhhcccccccHHHHHHHcCCc
Confidence            33322100          1111122336788989888887665 222  22356777778887776433  344588999


Q ss_pred             CcCeeeecccccceee
Q 038150          434 SLENLHIWRMESVKRV  449 (488)
Q Consensus       434 ~L~~L~l~~~~~l~~~  449 (488)
                      +|..|.+.+++....+
T Consensus       250 ~l~dlRv~~~Pl~d~l  265 (418)
T KOG2982|consen  250 QLVDLRVSENPLSDPL  265 (418)
T ss_pred             hhheeeccCCcccccc
Confidence            9999999999865555

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.41  E-value=0.00015  Score=64.53  Aligned_cols=256  Identities=17%  Similarity=0.059  Sum_probs=154.5

Q ss_pred             HHhcCCccceeecCCCcccccccCCcccccccCccCchhhhhhccCcEeecCCCCCcc----cCc-------hhhccccc
Q 038150          200 LFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVLPETLCELYNLEKLDISDCFNLK----ELP-------EGIGKLIN  268 (488)
Q Consensus       200 ~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~lp~~i~~L~~L~~L~l~~~~~~~----~lp-------~~l~~L~~  268 (488)
                      .+..+..+..++||+|.+     ...-..     .+...|.+-.+|+..+++.- +.+    ++|       +.+-++++
T Consensus        25 el~~~d~~~evdLSGNti-----gtEA~e-----~l~~~ia~~~~L~vvnfsd~-ftgr~kde~~~~L~~Ll~aLlkcp~   93 (388)
T COG5238          25 ELEMMDELVEVDLSGNTI-----GTEAME-----ELCNVIANVRNLRVVNFSDA-FTGRDKDELYSNLVMLLKALLKCPR   93 (388)
T ss_pred             HHHhhcceeEEeccCCcc-----cHHHHH-----HHHHHHhhhcceeEeehhhh-hhcccHHHHHHHHHHHHHHHhcCCc
Confidence            356689999999999984     332211     23345666788998888762 222    233       35567899


Q ss_pred             cceeeccCCCCCCCCCCC----CCCcccccccCceeecCCCCCCCCcccCcccc------cCCCcccccccccccCCCCh
Q 038150          269 VKHLLNRGTNSLRYMPVG----IGRLTGLRTLGEFHVSAGGGVDGRKACRLESL------KNLEHLQVCGISRLGDVSDV  338 (488)
Q Consensus       269 L~~L~l~~~~~~~~lp~~----i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l------~~L~~L~~L~~~~~~~~~~~  338 (488)
                      |+..++++|.+....|+.    |++-+.|.+|.+.+|.......+++...+..+      .+-+.|+...+....-....
T Consensus        94 l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs  173 (388)
T COG5238          94 LQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGS  173 (388)
T ss_pred             ceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCc
Confidence            999999999887766654    56778999999988876553333333333333      23455665444222212223


Q ss_pred             hhhhHhhcccCCCCCceeecccCchhhhhhhccccchHHHhhhCCCCCCCCEEEeccccCCCCCch----HHHhccCCcE
Q 038150          339 GEAKRLELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKELEIEYYRGNTVFPS----WMTSLTNLKS  414 (488)
Q Consensus       339 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~lp~----~~~~l~~L~~  414 (488)
                      .......+....+|+.+.+..|.+...       .....+...+..+.+|+.|+|..|.++-.-..    .+..-+.|+.
T Consensus       174 ~~~~a~~l~sh~~lk~vki~qNgIrpe-------gv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrE  246 (388)
T COG5238         174 KELSAALLESHENLKEVKIQQNGIRPE-------GVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRE  246 (388)
T ss_pred             HHHHHHHHHhhcCceeEEeeecCcCcc-------hhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhh
Confidence            344455666668899999999987532       11244455667788999999999877631111    1112356899


Q ss_pred             EeecCCCCCCCCC-------CCCCCCCcCeeeecccccceeeCccccCCCCCCCCCCCCCcccccCcccccccccc
Q 038150          415 LDLSSCENCEQLP-------PLGKLQSLENLHIWRMESVKRVGDEFLGIESDHHGSSSSSSVIIAFPKLKSLSIEV  483 (488)
Q Consensus       415 L~l~~~~~~~~~~-------~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~  483 (488)
                      |.+.+|-....-.       .--..|+|..|....+..-..+-.... .         .....+++|-|..|.+.+
T Consensus       247 L~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~-l---------~~~e~~~~p~L~~le~ng  312 (388)
T COG5238         247 LRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDIS-L---------NEFEQDAVPLLVDLERNG  312 (388)
T ss_pred             ccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeec-h---------hhhhhcccHHHHHHHHcc
Confidence            9999997554311       112368888888776651111100000 0         011156788888877764

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.32  E-value=0.00027  Score=45.07  Aligned_cols=34  Identities=32%  Similarity=0.525  Sum_probs=19.4

Q ss_pred             CCCEEEeccccCCCCCchHHHhccCCcEEeecCCC
Q 038150          387 NLKELEIEYYRGNTVFPSWMTSLTNLKSLDLSSCE  421 (488)
Q Consensus       387 ~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~  421 (488)
                      +|+.|++++|.+.. +|..++.+++|+.|++++|.
T Consensus         2 ~L~~L~l~~N~i~~-l~~~l~~l~~L~~L~l~~N~   35 (44)
T PF12799_consen    2 NLEELDLSNNQITD-LPPELSNLPNLETLNLSNNP   35 (44)
T ss_dssp             T-SEEEETSSS-SS-HGGHGTTCTTSSEEEETSSC
T ss_pred             cceEEEccCCCCcc-cCchHhCCCCCCEEEecCCC
Confidence            55666666666655 55555666666666666664

...

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.19  E-value=0.0006  Score=58.10  Aligned_cols=106  Identities=25%  Similarity=0.276  Sum_probs=71.5

Q ss_pred             CCCCceeecccCchhhhhhhccccchHHHhhhCCCCCCCCEEEeccccCCCCCchHHHhccCCcEEeecCCCCCC--CCC
Q 038150          350 KYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKELEIEYYRGNTVFPSWMTSLTNLKSLDLSSCENCE--QLP  427 (488)
Q Consensus       350 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~--~~~  427 (488)
                      .+...++++.|.+.              -.+.+..++.|.+|.+.+|.+...-|.--..+|+|+.|.+.+|.+..  ++.
T Consensus        42 d~~d~iDLtdNdl~--------------~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~  107 (233)
T KOG1644|consen   42 DQFDAIDLTDNDLR--------------KLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLD  107 (233)
T ss_pred             cccceecccccchh--------------hcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcc
Confidence            34566777777642              23567778899999999998887345444467889999999887433  455


Q ss_pred             CCCCCCCcCeeeecccccceeeCccccCCCCCCCCCCCCCcccccCcccccccccc
Q 038150          428 PLGKLQSLENLHIWRMESVKRVGDEFLGIESDHHGSSSSSSVIIAFPKLKSLSIEV  483 (488)
Q Consensus       428 ~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~  483 (488)
                      .+..+|.|++|.+-+++ ++.... +-..            ..-.+|+|+.|++.+
T Consensus       108 pLa~~p~L~~Ltll~Np-v~~k~~-YR~y------------vl~klp~l~~LDF~k  149 (233)
T KOG1644|consen  108 PLASCPKLEYLTLLGNP-VEHKKN-YRLY------------VLYKLPSLRTLDFQK  149 (233)
T ss_pred             hhccCCccceeeecCCc-hhcccC-ceeE------------EEEecCcceEeehhh
Confidence            57788999999998887 222211 0000            044688888888765

>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []

Probab=97.15  E-value=0.00035  Score=65.86  Aligned_cols=37  Identities=16%  Similarity=0.080  Sum_probs=32.5

Q ss_pred             ccccccceeecccccCCCcccccchhhhHHHHHHHHHH
Q 038150           81 HKKKKVRFCFRASCLGFKTEEFGFKQVFLRHDIANKIK  118 (488)
Q Consensus        81 ~~~~~lk~cf~~~cs~fped~~i~~~~l~~~~ia~~i~  118 (488)
                      .++...|.||.| ||+||+++.|.++.++++|+|+|+.
T Consensus       246 ~L~~~~~~~f~~-L~~f~~~~~i~~~~li~lW~~e~~i  282 (287)
T PF00931_consen  246 SLPDELRRCFLY-LSIFPEGVPIPRERLIRLWVAEGFI  282 (287)
T ss_dssp             SSHTCCHHHHHH-GGGSGTTS-EEHHHHHHHHTT-HHT
T ss_pred             cCCccHHHHHhh-CcCCCCCceECHHHHHHHHHHCCCC
Confidence            357799999999 9999999999999999999999984

This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.13  E-value=0.00013  Score=58.01  Aligned_cols=53  Identities=21%  Similarity=0.276  Sum_probs=26.6

Q ss_pred             cCcEeecCCCCCcccCchhhccccccceeeccCCCCCCCCCCCCCCcccccccCc
Q 038150          244 NLEKLDISDCFNLKELPEGIGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGE  298 (488)
Q Consensus       244 ~L~~L~l~~~~~~~~lp~~l~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l  298 (488)
                      .+++|++..|. +..+|.++..++.|+.|+++.|. ....|..+..|.+|-.|+.
T Consensus        78 t~t~lNl~~ne-isdvPeE~Aam~aLr~lNl~~N~-l~~~p~vi~~L~~l~~Lds  130 (177)
T KOG4579|consen   78 TATTLNLANNE-ISDVPEELAAMPALRSLNLRFNP-LNAEPRVIAPLIKLDMLDS  130 (177)
T ss_pred             hhhhhhcchhh-hhhchHHHhhhHHhhhcccccCc-cccchHHHHHHHhHHHhcC
Confidence            45555555532 55555555555555555555555 2334444444444444443

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.99  E-value=0.00012  Score=74.46  Aligned_cols=117  Identities=20%  Similarity=0.215  Sum_probs=62.1

Q ss_pred             cccCcceecccccchhhhhhHHHHHhcCCccceeecCCC-cccccccCCcccccccCccCchhhhhhccCcEeecCCCCC
Q 038150          177 RVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGS-YHSTRLLTPEVPRNIEKLVLPETLCELYNLEKLDISDCFN  255 (488)
Q Consensus       177 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~-~~~~~~~~~~lp~~i~~l~lp~~i~~L~~L~~L~l~~~~~  255 (488)
                      .++.|+.|.+.++..+....+......+++|+.|+++++ ..     ....+.     ..+.....+.+|+.|++++|..
T Consensus       186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-----~~~~~~-----~~~~~~~~~~~L~~l~l~~~~~  255 (482)
T KOG1947|consen  186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLL-----ITLSPL-----LLLLLLSICRKLKSLDLSGCGL  255 (482)
T ss_pred             hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccc-----cccchh-----HhhhhhhhcCCcCccchhhhhc
Confidence            357777777777655543234455677778888888763 21     111111     1122334557777777777654


Q ss_pred             cccC-chhhc-cccccceeeccCCCCCC--CCCCCCCCcccccccCceeecC
Q 038150          256 LKEL-PEGIG-KLINVKHLLNRGTNSLR--YMPVGIGRLTGLRTLGEFHVSA  303 (488)
Q Consensus       256 ~~~l-p~~l~-~L~~L~~L~l~~~~~~~--~lp~~i~~L~~L~~L~l~~~~~  303 (488)
                      +... -..+. .+++|++|.+..|....  .+-....++++|++|++..+..
T Consensus       256 isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~  307 (482)
T KOG1947|consen  256 VTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG  307 (482)
T ss_pred             cCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence            3321 11222 25677777766665211  1111134566677777766544

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.66  E-value=0.00045  Score=70.31  Aligned_cols=29  Identities=31%  Similarity=0.386  Sum_probs=16.9

Q ss_pred             HHhccCCcEEeecCCCCCCCCC--C-CCCCCCc
Q 038150          406 MTSLTNLKSLDLSSCENCEQLP--P-LGKLQSL  435 (488)
Q Consensus       406 ~~~l~~L~~L~l~~~~~~~~~~--~-l~~l~~L  435 (488)
                      +..+++|+.+.+..|. .....  . +..+|.|
T Consensus       358 ~~~~~~l~~~~l~~~~-~~~~~~~~~l~gc~~l  389 (482)
T KOG1947|consen  358 LRSCPKLTDLSLSYCG-ISDLGLELSLRGCPNL  389 (482)
T ss_pred             HhcCCCcchhhhhhhh-ccCcchHHHhcCCccc
Confidence            4467777777777776 33322  2 4555555

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=96.61  E-value=0.0017  Score=51.89  Aligned_cols=87  Identities=16%  Similarity=0.208  Sum_probs=50.3

Q ss_pred             cceeeEEEEecCCcCccccc-cccCcceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccCccC
Q 038150          157 KVRHLMLIFSKAASLPISTL-RVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVL  235 (488)
Q Consensus       157 ~vr~l~l~~~~~~~~~~~~~-~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~l  235 (488)
                      .+..++++.+...+||..+. +++.+.+|++.+| .+..  +|..+..++.||.|+++.|.+      .         ..
T Consensus        54 el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~n-eisd--vPeE~Aam~aLr~lNl~~N~l------~---------~~  115 (177)
T KOG4579|consen   54 ELTKISLSDNGFKKFPKKFTIKFPTATTLNLANN-EISD--VPEELAAMPALRSLNLRFNPL------N---------AE  115 (177)
T ss_pred             eEEEEecccchhhhCCHHHhhccchhhhhhcchh-hhhh--chHHHhhhHHhhhcccccCcc------c---------cc
Confidence            33445666666666665543 3346666666665 4442  444466666666666666663      2         55


Q ss_pred             chhhhhhccCcEeecCCCCCcccCchh
Q 038150          236 PETLCELYNLEKLDISDCFNLKELPEG  262 (488)
Q Consensus       236 p~~i~~L~~L~~L~l~~~~~~~~lp~~  262 (488)
                      |..|..|.+|-+|+..+|. ..++|..
T Consensus       116 p~vi~~L~~l~~Lds~~na-~~eid~d  141 (177)
T KOG4579|consen  116 PRVIAPLIKLDMLDSPENA-RAEIDVD  141 (177)
T ss_pred             hHHHHHHHhHHHhcCCCCc-cccCcHH
Confidence            5666666666666666643 4445443

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.52  E-value=0.00085  Score=59.62  Aligned_cols=17  Identities=24%  Similarity=0.116  Sum_probs=8.2

Q ss_pred             hhcccCCCCCceeeccc
Q 038150          344 LELDKKKYLSSLTLWFD  360 (488)
Q Consensus       344 ~~l~~l~~L~~L~l~~~  360 (488)
                      ..+..+++|+.|.++.|
T Consensus        59 ~~~P~Lp~LkkL~lsdn   75 (260)
T KOG2739|consen   59 TNFPKLPKLKKLELSDN   75 (260)
T ss_pred             ccCCCcchhhhhcccCC
Confidence            33444445555555554

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.26  E-value=0.0002  Score=63.84  Aligned_cols=58  Identities=24%  Similarity=0.157  Sum_probs=26.5

Q ss_pred             CCCCCCEEEeccccCCCCCchHHHhccCCcEEeecCCCCCCCCCC---CCCCCCcCeeeecccc
Q 038150          384 PPLNLKELEIEYYRGNTVFPSWMTSLTNLKSLDLSSCENCEQLPP---LGKLQSLENLHIWRME  444 (488)
Q Consensus       384 ~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~---l~~l~~L~~L~l~~~~  444 (488)
                      .|+.|+.|.|+-|.+++ + ..+..+.+|+.|+|..|.+ .++..   +.++|+|++|-|..|+
T Consensus        39 kMp~lEVLsLSvNkIss-L-~pl~rCtrLkElYLRkN~I-~sldEL~YLknlpsLr~LWL~ENP   99 (388)
T KOG2123|consen   39 KMPLLEVLSLSVNKISS-L-APLQRCTRLKELYLRKNCI-ESLDELEYLKNLPSLRTLWLDENP   99 (388)
T ss_pred             hcccceeEEeecccccc-c-hhHHHHHHHHHHHHHhccc-ccHHHHHHHhcCchhhhHhhccCC
Confidence            34455555555555543 2 2234455555555544432 22221   4445555555555444

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.11  E-value=0.001  Score=59.48  Aligned_cols=99  Identities=14%  Similarity=0.133  Sum_probs=47.2

Q ss_pred             ccCcceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccCccCchhhhhhccCcEeecCCCCCcc
Q 038150          178 VKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVLPETLCELYNLEKLDISDCFNLK  257 (488)
Q Consensus       178 ~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~lp~~i~~L~~L~~L~l~~~~~~~  257 (488)
                      +.+++.|++-|| .+++  + ..+.+++.|.||.||-|.      +.          -.+.+..+++|+.|+|+.|. +.
T Consensus        18 l~~vkKLNcwg~-~L~D--I-sic~kMp~lEVLsLSvNk------Is----------sL~pl~rCtrLkElYLRkN~-I~   76 (388)
T KOG2123|consen   18 LENVKKLNCWGC-GLDD--I-SICEKMPLLEVLSLSVNK------IS----------SLAPLQRCTRLKELYLRKNC-IE   76 (388)
T ss_pred             HHHhhhhcccCC-CccH--H-HHHHhcccceeEEeeccc------cc----------cchhHHHHHHHHHHHHHhcc-cc
Confidence            344455555554 3332  1 124455666666666555      22          12345555566666665543 33


Q ss_pred             cCc--hhhccccccceeeccCCCCCCCCCC-----CCCCcccccccC
Q 038150          258 ELP--EGIGKLINVKHLLNRGTNSLRYMPV-----GIGRLTGLRTLG  297 (488)
Q Consensus       258 ~lp--~~l~~L~~L~~L~l~~~~~~~~lp~-----~i~~L~~L~~L~  297 (488)
                      .+.  ..+.++++|+.|-+..|...+.-+.     .+.-|++|+.|+
T Consensus        77 sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   77 SLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             cHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence            322  2345556666666655543333222     134456666655

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=95.79  E-value=0.0027  Score=56.49  Aligned_cols=13  Identities=23%  Similarity=0.560  Sum_probs=6.0

Q ss_pred             cCCccceeecCCC
Q 038150          203 ELTSLRALDFGGS  215 (488)
Q Consensus       203 ~l~~Lr~L~Ls~~  215 (488)
                      .+++|+.|.+|.|
T Consensus        63 ~Lp~LkkL~lsdn   75 (260)
T KOG2739|consen   63 KLPKLKKLELSDN   75 (260)
T ss_pred             CcchhhhhcccCC
Confidence            3444444444444

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.06  E-value=0.0022  Score=54.73  Aligned_cols=66  Identities=27%  Similarity=0.357  Sum_probs=29.4

Q ss_pred             hhhCCCCCCCCEEEeccccCCCCC-chHHH-hccCCcEEeecCCCCCCCCC--CCCCCCCcCeeeecccc
Q 038150          379 LEALRPPLNLKELEIEYYRGNTVF-PSWMT-SLTNLKSLDLSSCENCEQLP--PLGKLQSLENLHIWRME  444 (488)
Q Consensus       379 ~~~~~~~~~L~~L~l~~~~~~~~l-p~~~~-~l~~L~~L~l~~~~~~~~~~--~l~~l~~L~~L~l~~~~  444 (488)
                      .+.+..++.++.|.+.+|.-..+. -..++ -.++|+.|+|++|+..++-.  .+..+++|+.|.|.+.+
T Consensus       118 le~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~  187 (221)
T KOG3864|consen  118 LEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLP  187 (221)
T ss_pred             HHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCch
Confidence            344444555555555554332100 00011 23455555555555444422  24555555555555544

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=95.04  E-value=0.02  Score=49.11  Aligned_cols=105  Identities=17%  Similarity=0.192  Sum_probs=59.1

Q ss_pred             CccceeecCCCcccccccCCcccccccCccCchhhhhhccCcEeecCCCCCcccCchhhcc-ccccceeeccCCCCCCCC
Q 038150          205 TSLRALDFGGSYHSTRLLTPEVPRNIEKLVLPETLCELYNLEKLDISDCFNLKELPEGIGK-LINVKHLLNRGTNSLRYM  283 (488)
Q Consensus       205 ~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~lp~~i~~L~~L~~L~l~~~~~~~~lp~~l~~-L~~L~~L~l~~~~~~~~l  283 (488)
                      .+.-.+||+.|.      +..+          ..+..+..|.+|.+..|. +..+-+.+.. +++|..|.+.+|.+ ..+
T Consensus        42 d~~d~iDLtdNd------l~~l----------~~lp~l~rL~tLll~nNr-It~I~p~L~~~~p~l~~L~LtnNsi-~~l  103 (233)
T KOG1644|consen   42 DQFDAIDLTDND------LRKL----------DNLPHLPRLHTLLLNNNR-ITRIDPDLDTFLPNLKTLILTNNSI-QEL  103 (233)
T ss_pred             cccceecccccc------hhhc----------ccCCCccccceEEecCCc-ceeeccchhhhccccceEEecCcch-hhh
Confidence            345667777777      3322          123366777777777755 5555445543 45677777777763 222


Q ss_pred             C--CCCCCcccccccCceeecCCCCCCCCcccCcccccCCCccccccccc
Q 038150          284 P--VGIGRLTGLRTLGEFHVSAGGGVDGRKACRLESLKNLEHLQVCGISR  331 (488)
Q Consensus       284 p--~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~  331 (488)
                      .  ..+..++.|++|.+-+|..+..    .......+-.+++|+.|++..
T Consensus       104 ~dl~pLa~~p~L~~Ltll~Npv~~k----~~YR~yvl~klp~l~~LDF~k  149 (233)
T KOG1644|consen  104 GDLDPLASCPKLEYLTLLGNPVEHK----KNYRLYVLYKLPSLRTLDFQK  149 (233)
T ss_pred             hhcchhccCCccceeeecCCchhcc----cCceeEEEEecCcceEeehhh
Confidence            1  2355667777777766655441    112233445566666665543

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=94.34  E-value=0.023  Score=29.96  Aligned_cols=10  Identities=40%  Similarity=0.647  Sum_probs=5.6

Q ss_pred             cceeecCCCc
Q 038150          207 LRALDFGGSY  216 (488)
Q Consensus       207 Lr~L~Ls~~~  216 (488)
                      |++||+++|.
T Consensus         2 L~~Ldls~n~   11 (22)
T PF00560_consen    2 LEYLDLSGNN   11 (22)
T ss_dssp             ESEEEETSSE
T ss_pred             ccEEECCCCc
Confidence            5555555555

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=94.29  E-value=0.017  Score=30.43  Aligned_cols=21  Identities=38%  Similarity=0.567  Sum_probs=12.0

Q ss_pred             cCcEeecCCCCCcccCchhhcc
Q 038150          244 NLEKLDISDCFNLKELPEGIGK  265 (488)
Q Consensus       244 ~L~~L~l~~~~~~~~lp~~l~~  265 (488)
                      +|++|++++|. +..+|.++++
T Consensus         1 ~L~~Ldls~n~-l~~ip~~~~~   21 (22)
T PF00560_consen    1 NLEYLDLSGNN-LTSIPSSFSN   21 (22)
T ss_dssp             TESEEEETSSE-ESEEGTTTTT
T ss_pred             CccEEECCCCc-CEeCChhhcC
Confidence            35666666663 4466655443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.86  E-value=0.012  Score=50.35  Aligned_cols=75  Identities=20%  Similarity=0.097  Sum_probs=50.7

Q ss_pred             hhhhHhhcccCCCCCceeecccCchhhhhhhccccchHHHhhhCCC-CCCCCEEEeccccC-CCCCchHHHhccCCcEEe
Q 038150          339 GEAKRLELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRP-PLNLKELEIEYYRG-NTVFPSWMTSLTNLKSLD  416 (488)
Q Consensus       339 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~L~~L~l~~~~~-~~~lp~~~~~l~~L~~L~  416 (488)
                      ...-...+.+++.++.|.+.++.--           .....+.+++ .++|+.|+|++|.- ++.--.++..+++|+.|.
T Consensus       114 ~~eGle~L~~l~~i~~l~l~~ck~~-----------dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~  182 (221)
T KOG3864|consen  114 MYEGLEHLRDLRSIKSLSLANCKYF-----------DDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH  182 (221)
T ss_pred             HHHHHHHHhccchhhhheeccccch-----------hhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence            3344566777777888888777532           2333444444 56999999998854 433467888999999999


Q ss_pred             ecCCCCCC
Q 038150          417 LSSCENCE  424 (488)
Q Consensus       417 l~~~~~~~  424 (488)
                      |.+-+...
T Consensus       183 l~~l~~v~  190 (221)
T KOG3864|consen  183 LYDLPYVA  190 (221)
T ss_pred             hcCchhhh
Confidence            88755433

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=91.50  E-value=0.0065  Score=60.83  Aligned_cols=197  Identities=19%  Similarity=0.112  Sum_probs=97.2

Q ss_pred             cceecccccchhhh---hhHHHHHhcCCccceeecCCCcccccccCCcccccccCccCchhhhhh-ccCcEeecCCCCCc
Q 038150          181 MRTLLINDHSLLNA---AILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVLPETLCEL-YNLEKLDISDCFNL  256 (488)
Q Consensus       181 Lr~L~l~~~~~~~~---~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~lp~~i~~L-~~L~~L~l~~~~~~  256 (488)
                      +..|.+.+|. +..   ..+...+.....|..|++++|.+      +.  ....  .+-..+... ..|++|++..|...
T Consensus        89 l~~L~L~~~~-l~~~~~~~l~~~l~t~~~L~~L~l~~n~l------~~--~g~~--~l~~~l~~~~~~l~~L~l~~c~l~  157 (478)
T KOG4308|consen   89 LLHLSLANNR-LGDRGAEELAQALKTLPTLGQLDLSGNNL------GD--EGAR--LLCEGLRLPQCLLQTLELVSCSLT  157 (478)
T ss_pred             HHHhhhhhCc-cccchHHHHHHHhcccccHhHhhcccCCC------cc--HhHH--HHHhhcccchHHHHHHHhhccccc
Confidence            6777777763 222   13455567778899999999884      31  1000  011111121 45667777776533


Q ss_pred             c----cCchhhccccccceeeccCCCCCC----CCCCCCC----CcccccccCceeecCCCCCCCCcccCcccccCCCc-
Q 038150          257 K----ELPEGIGKLINVKHLLNRGTNSLR----YMPVGIG----RLTGLRTLGEFHVSAGGGVDGRKACRLESLKNLEH-  323 (488)
Q Consensus       257 ~----~lp~~l~~L~~L~~L~l~~~~~~~----~lp~~i~----~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~-  323 (488)
                      .    .+...+.+...++.++++.|.+..    .++..+.    ...++++|.+.++......   ....-..+...++ 
T Consensus       158 ~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~---c~~l~~~l~~~~~~  234 (478)
T KOG4308|consen  158 SEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSS---CALLDEVLASGESL  234 (478)
T ss_pred             ccchHHHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHH---HHHHHHHHhccchh
Confidence            2    245566667778888888776421    1122222    4567777777666544311   0111122233333 


Q ss_pred             ccccccccccCCCChhhhhHhhcccC-CCCCceeecccCchhhhhhhccccchHHHhhhCCCCCCCCEEEeccccCC
Q 038150          324 LQVCGISRLGDVSDVGEAKRLELDKK-KYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKELEIEYYRGN  399 (488)
Q Consensus       324 L~~L~~~~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  399 (488)
                      ++.+++.....-+...+.+...+..+ ..++.++++.|.+...        ....+.+.+..++.++.|.+.++...
T Consensus       235 ~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~--------~~~~L~~~l~~~~~l~~l~l~~n~l~  303 (478)
T KOG4308|consen  235 LRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEK--------GVRDLAEVLVSCRQLEELSLSNNPLT  303 (478)
T ss_pred             hHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCcccc--------chHHHHHHHhhhHHHHHhhcccCccc
Confidence            33333322221111222333334444 4556666666655432        12444455555556666666655544

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=90.55  E-value=0.17  Score=24.64  Aligned_cols=11  Identities=36%  Similarity=0.631  Sum_probs=4.6

Q ss_pred             ccceeecCCCc
Q 038150          206 SLRALDFGGSY  216 (488)
Q Consensus       206 ~Lr~L~Ls~~~  216 (488)
                      +|++|++++|.
T Consensus         2 ~L~~L~l~~n~   12 (17)
T PF13504_consen    2 NLRTLDLSNNR   12 (17)
T ss_dssp             T-SEEEETSS-
T ss_pred             ccCEEECCCCC
Confidence            34555555554

...

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=90.09  E-value=0.028  Score=49.28  Aligned_cols=84  Identities=15%  Similarity=0.143  Sum_probs=45.3

Q ss_pred             HhcCCccceeecCCCcccccccCCcccccccCccCchhhhhhccCcEeecCCCCCcccCchhhccccccceeeccCCCCC
Q 038150          201 FRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVLPETLCELYNLEKLDISDCFNLKELPEGIGKLINVKHLLNRGTNSL  280 (488)
Q Consensus       201 ~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~lp~~i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~L~l~~~~~~  280 (488)
                      +..+....+||++.+.+      -         .+-..++.++.|..|+++.|. +..+|.+.+.+..++++.+..|. .
T Consensus        38 i~~~kr~tvld~~s~r~------v---------n~~~n~s~~t~~~rl~~sknq-~~~~~~d~~q~~e~~~~~~~~n~-~  100 (326)
T KOG0473|consen   38 IASFKRVTVLDLSSNRL------V---------NLGKNFSILTRLVRLDLSKNQ-IKFLPKDAKQQRETVNAASHKNN-H  100 (326)
T ss_pred             hhccceeeeehhhhhHH------H---------hhccchHHHHHHHHHhccHhh-HhhChhhHHHHHHHHHHHhhccc-h
Confidence            44555556666665552      1         233344555555566665532 55556666666666666555554 4


Q ss_pred             CCCCCCCCCcccccccCceee
Q 038150          281 RYMPVGIGRLTGLRTLGEFHV  301 (488)
Q Consensus       281 ~~lp~~i~~L~~L~~L~l~~~  301 (488)
                      ...|...++++.+++++.-.+
T Consensus       101 ~~~p~s~~k~~~~k~~e~k~~  121 (326)
T KOG0473|consen  101 SQQPKSQKKEPHPKKNEQKKT  121 (326)
T ss_pred             hhCCccccccCCcchhhhccC
Confidence            455555555666655555443

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=88.27  E-value=0.95  Score=36.34  Aligned_cols=97  Identities=12%  Similarity=0.188  Sum_probs=39.7

Q ss_pred             hCCCCCCCCEEEeccccCCCCCc-hHHHhccCCcEEeecCCCCCCCCCC--CCCCCCcCeeeecccccceeeCccccCCC
Q 038150          381 ALRPPLNLKELEIEYYRGNTVFP-SWMTSLTNLKSLDLSSCENCEQLPP--LGKLQSLENLHIWRMESVKRVGDEFLGIE  457 (488)
Q Consensus       381 ~~~~~~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~~~~~--l~~l~~L~~L~l~~~~~l~~~~~~~~~~~  457 (488)
                      .+..+++|+.+.+.+. ... ++ ..+..+++|+.+.+.+  ....++.  +..+++|+.+.+..  .+..++...+...
T Consensus        30 ~F~~~~~l~~i~~~~~-~~~-i~~~~F~~~~~l~~i~~~~--~~~~i~~~~F~~~~~l~~i~~~~--~~~~i~~~~f~~~  103 (129)
T PF13306_consen   30 AFSNCTSLKSINFPNN-LTS-IGDNAFSNCKSLESITFPN--NLKSIGDNAFSNCTNLKNIDIPS--NITEIGSSSFSNC  103 (129)
T ss_dssp             TTTT-TT-SEEEESST-TSC-E-TTTTTT-TT-EEEEETS--TT-EE-TTTTTT-TTECEEEETT--T-BEEHTTTTTT-
T ss_pred             hccccccccccccccc-ccc-cceeeeecccccccccccc--cccccccccccccccccccccCc--cccEEchhhhcCC
Confidence            4566667888887664 333 33 2344566778887754  2333332  55677888777743  2556655433221


Q ss_pred             CCCCCCCCCCcccccCcccccccccccccCC
Q 038150          458 SDHHGSSSSSSVIIAFPKLKSLSIEVLRELE  488 (488)
Q Consensus       458 ~~~~~~~~~~~~~~~~p~L~~L~l~~~p~L~  488 (488)
                           ......-...+..+....+.+|++||
T Consensus       104 -----~l~~i~~~~~~~~i~~~~F~~~~~l~  129 (129)
T PF13306_consen  104 -----NLKEINIPSNITKIEENAFKNCTKLK  129 (129)
T ss_dssp             -----T--EEE-TTB-SS----GGG------
T ss_pred             -----CceEEEECCCccEECCccccccccCC
Confidence                 00111112345566677778888876

>PF12061 DUF3542: Protein of unknown function (DUF3542); InterPro: IPR021929 R1 is a gene for resistance to late blight, the most destructive disease in potato cultivation worldwide

Probab=85.68  E-value=1.1  Score=41.25  Aligned_cols=54  Identities=20%  Similarity=0.378  Sum_probs=45.8

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHH-hhh-ccCcHHHHHHHHHHHHhhhchHHHHHHHH
Q 038150            6 GVEKEVKSLTSHLQAIQAVLDDA-EEK-QVKDKAVRHWLGRLKYASYDIEDVLDEWI   60 (488)
Q Consensus         6 ~v~~~i~~l~~eL~~~~~~L~~a-~~~-~~~~~~v~~w~~~lr~~~yd~eD~id~~~   60 (488)
                      -++.+++-++.|++.+|.||+.. ++. ...++ .+.++.++-..||.+|-++|...
T Consensus       318 flKnQiqvIQ~elesLqpFLk~V~ee~~nkh~~-~ed~a~~ii~kAyevEYVVDaCi  373 (402)
T PF12061_consen  318 FLKNQIQVIQTELESLQPFLKHVVEEPHNKHDT-NEDCATQIIRKAYEVEYVVDACI  373 (402)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHhccchhhhh-hhhHHHHHHHHHhheeeeeehhh
Confidence            46889999999999999999986 442 34444 89999999999999999999875

The R1 gene belongs to the class of plant genes for pathogen resistance that have a leucine zipper motif, a putative nucleotide binding domain and a leucine-rich repeat domain []. Most proteins matching this entry are found associated with PF00931 from PFAM.

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=80.50  E-value=1.3  Score=24.19  Aligned_cols=11  Identities=36%  Similarity=0.616  Sum_probs=5.4

Q ss_pred             ccceeecCCCc
Q 038150          206 SLRALDFGGSY  216 (488)
Q Consensus       206 ~Lr~L~Ls~~~  216 (488)
                      +|++|+|++|.
T Consensus         3 ~L~~L~L~~N~   13 (26)
T smart00369        3 NLRELDLSNNQ   13 (26)
T ss_pred             CCCEEECCCCc
Confidence            44455555544

>smart00370 LRR Leucine-rich repeats, outliers

Probab=80.50  E-value=1.3  Score=24.19  Aligned_cols=11  Identities=36%  Similarity=0.616  Sum_probs=5.4

Q ss_pred             ccceeecCCCc
Q 038150          206 SLRALDFGGSY  216 (488)
Q Consensus       206 ~Lr~L~Ls~~~  216 (488)
                      +|++|+|++|.
T Consensus         3 ~L~~L~L~~N~   13 (26)
T smart00370        3 NLRELDLSNNQ   13 (26)
T ss_pred             CCCEEECCCCc
Confidence            44455555544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	488
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-16
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-13
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	8e-11
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-07
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-12
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-11
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-05
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-05
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-05
3qfl_A	115	MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-	8e-10
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-09
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-08
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-08
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-06
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-04
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-08
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-06
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-04
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-05
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-05
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-06
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-06
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-06
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-05
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-04
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-05
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-05
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-04
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-06
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-05
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	7e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-04
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-05
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-05
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-05
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	9e-05
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-04
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-05
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-05
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-05
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	5e-05
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-05
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	4e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-04
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-04
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-05
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	6e-05
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-04
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-04
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-04
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-04
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-04
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	8e-04
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	6e-04
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	6e-04
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	7e-04

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 78.8 bits (195), Expect = 2e-16
 Identities = 49/271 (18%), Positives = 87/271 (32%), Gaps = 64/271 (23%)

Query: 173 ISTLRVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEK 232
           +          L +    L      ++ FR L+ L+ +    +              + +
Sbjct: 75  LEDATQPGRVALELRSVPL--PQFPDQAFR-LSHLQHMTIDAA-------------GLME 118

Query: 233 LVLPETLCELYNLEKLDISDCFNLKELPEGIGKLINVKHLLNRGTNSLRYMPVGIGRLTG 292
           L  P+T+ +   LE L ++    L+ LP  I  L  ++ L  R    L  +P  +     
Sbjct: 119 L--PDTMQQFAGLETLTLARN-PLRALPASIASLNRLRELSIRACPELTELPEPLASTDA 175

Query: 293 LRTLGEFHVSAGGGVDGRKACRLESLKNLEHLQVCGISRLGDVSDVGEAKRLELDKKKYL 352
                                 L +L++L  L+  GI  L     +   + L+       
Sbjct: 176 SGEHQG----------------LVNLQSL-RLEWTGIRSLPA--SIANLQNLK------- 209

Query: 353 SSLTLWFDKEEEEEGERRKNEDNQL--LLEALRPPLNLKELEIEYYRGNTVFPSWMTSLT 410
              +L                ++ L  L  A+     L+EL++        +P       
Sbjct: 210 ---SLKIR-------------NSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRA 253

Query: 411 NLKSLDLSSCENCEQLPP-LGKLQSLENLHI 440
            LK L L  C N   LP  + +L  LE L +
Sbjct: 254 PLKRLILKDCSNLLTLPLDIHRLTQLEKLDL 284

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 69.6 bits (171), Expect = 4e-13
 Identities = 34/148 (22%), Positives = 56/148 (37%), Gaps = 27/148 (18%)

Query: 170 SLPISTLRVKRMRTLLINDHSLLNA-------AILEELFRELTSLRALDFGGSYHSTRLL 222
           +LP S   + R+R L I     L                + L +L++L    +      +
Sbjct: 141 ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWT-----GI 195

Query: 223 TPEVPRNIEKL--------------VLPETLCELYNLEKLDISDCFNLKELPEGIGKLIN 268
              +P +I  L               L   +  L  LE+LD+  C  L+  P   G    
Sbjct: 196 R-SLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAP 254

Query: 269 VKHLLNRGTNSLRYMPVGIGRLTGLRTL 296
           +K L+ +  ++L  +P+ I RLT L  L
Sbjct: 255 LKRLILKDCSNLLTLPLDIHRLTQLEKL 282

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 62.3 bits (152), Expect = 8e-11
 Identities = 26/118 (22%), Positives = 42/118 (35%), Gaps = 24/118 (20%)

Query: 197 LEEL---FRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLV---------------LPET 238
           +  L      L +L++L    S      L+  +   I  L                 P  
Sbjct: 195 IRSLPASIANLQNLKSLKIRNS-----PLS-ALGPAIHHLPKLEELDLRGCTALRNYPPI 248

Query: 239 LCELYNLEKLDISDCFNLKELPEGIGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTL 296
                 L++L + DC NL  LP  I +L  ++ L  RG  +L  +P  I +L     +
Sbjct: 249 FGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCII 306

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 51.9 bits (125), Expect = 2e-07
 Identities = 34/145 (23%), Positives = 53/145 (36%), Gaps = 26/145 (17%)

Query: 159 RHLMLIFSKAASLPISTLRVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHS 218
           + L L ++   SLP S   ++ +++L I +  L  +A+   +   L  L  LD  G    
Sbjct: 186 QSLRLEWTGIRSLPASIANLQNLKSLKIRNSPL--SALGPAIHH-LPKLEELDLRGCTAL 242

Query: 219 TRLLTPEVPRNIEKLV---------------LPETLCELYNLEKLDISDCFNLKELPEGI 263
                   P                      LP  +  L  LEKLD+  C NL  LP  I
Sbjct: 243 RNY-----PPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLI 297

Query: 264 GKLINVKHLL---NRGTNSLRYMPV 285
            +L     +L   +      ++ PV
Sbjct: 298 AQLPANCIILVPPHLQAQLDQHRPV 322

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 46.1 bits (110), Expect = 1e-05
 Identities = 22/202 (10%), Positives = 42/202 (20%), Gaps = 62/202 (30%)

Query: 244 NLEKLDISDCFNLKELPEGIGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFHVSA 303
             E L       L+   + + +     +      +S                        
Sbjct: 13  GRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHS------------------------ 48

Query: 304 GGGVDGRKACRLESLKNLEHLQVCGISRLGDVSDVGEAKRLELDKKKYLSSLTLWFDKEE 363
                           N  + Q+   +     +     +           +L L      
Sbjct: 49  -----------AWRQANSNNPQIETRTGRALKATADLLEDATQPG---RVALEL------ 88

Query: 364 EEEGERRKNEDNQL--LLEALRPPLNLKELEIEYYRGN--TVFPSWMTSLTNLKSLDLSS 419
                        L    +      +L+ + I           P  M     L++L L+ 
Sbjct: 89  ---------RSVPLPQFPDQAFRLSHLQHMTI---DAAGLMELPDTMQQFAGLETLTLAR 136

Query: 420 CENCEQLPP-LGKLQSLENLHI 440
                 LP  +  L  L  L I
Sbjct: 137 N-PLRALPASIASLNRLRELSI 157

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 67.6 bits (164), Expect = 6e-12
 Identities = 78/596 (13%), Positives = 168/596 (28%), Gaps = 200/596 (33%)

Query: 14  LTSHLQAIQAVLDDAEEKQVKDKAVRHWL-GRLKYASYDIEDVLDEWITGRRKLQIEGGI 72
           L+   + +Q  +++      K      +L   +K        +   +I  R +L      
Sbjct: 72  LSKQEEMVQKFVEEVLRINYK------FLMSPIKTEQRQPSMMTRMYIEQRDRLY----- 120

Query: 73  GENALIAPH---KKKKVRFCFRASCLGFKTEEF-------GF-KQVFLRHDIANKIK--- 118
            +N + A +   + +      R + L  +  +        G  K   +  D+    K   
Sbjct: 121 NDNQVFAKYNVSRLQPYL-KLRQALLELRPAKNVLIDGVLGSGKTW-VALDVCLSYKVQC 178

Query: 119 EMNEELH--DIATQKD-------IQNECFSMAINGSEEPNATNALDEKVRHLMLIFSKAA 169
           +M+ ++   ++            +Q   + +  N +   +                S   
Sbjct: 179 KMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSD---------------HSSNI 223

Query: 170 SLPISTLRVKRMRTLLIN---DHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEV 226
            L I +++   +R LL +   ++ LL   +L  + +   +  A +         LLT   
Sbjct: 224 KLRIHSIQ-AELRRLLKSKPYENCLL---VLLNV-QNAKAWNAFNLS----CKILLTT-- 272

Query: 227 PRNIE-----------KLVLPETLCELYNLEKLDI-SDCFNLK--ELPE----------- 261
            R  +            + L      L   E   +     + +  +LP            
Sbjct: 273 -RFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLS 331

Query: 262 GIGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGRKACRLESLKNL 321
            I + I  +  L    N          +LT    +              ++  L  L+  
Sbjct: 332 IIAESI--RDGLATWDNWKHV---NCDKLT--TII--------------ESS-LNVLEPA 369

Query: 322 EHLQV---CGISRLGDVSDVG-EAKRLELDKKKYLSSLTLWFDKEEEEEG---------- 367
           E+ ++     +               L L          +WFD  + +            
Sbjct: 370 EYRKMFDRLSVFP----PSAHIPTILLSL----------IWFDVIKSDVMVVVNKLHKYS 415

Query: 368 --ERRKNED----NQLLLEALRPPLNLKELE---IEYYRGNTVFPSWMTSLTNLKSLD-- 416
             E++  E       + LE      N   L    +++Y     F S          LD  
Sbjct: 416 LVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPY---LDQY 472

Query: 417 --------LSSCENCEQL---------------------PPLGKLQSLENL--------- 438
                   L + E+ E++                            S+ N          
Sbjct: 473 FYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKP 532

Query: 439 HIWRMESV--KRVGD--EFL-GIESDHHGSSSSSSVIIAF-PKLKSLSIEVLRELE 488
           +I   +    + V    +FL  IE +   S  +  + IA   + +++  E  ++++
Sbjct: 533 YICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQVQ 588

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 51.8 bits (123), Expect = 4e-07
 Identities = 64/442 (14%), Positives = 123/442 (27%), Gaps = 123/442 (27%)

Query: 95  LGFKTEEFGFK-----QVFLRHDIAN-KIKEMNEELHDIATQKDIQNECFSMAINGSEEP 148
           + F+T E  ++      VF    + N   K++ +    I ++++I +      I      
Sbjct: 7   MDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDH------I--IMSK 58

Query: 149 NATNALDEKVRHLMLIF-SKAASLPISTLRVKR-MRTLLINDHSLLNAAILEELFRELTS 206
           +A          L     SK   +      V++ +  +L  ++  L + I  E  R+  S
Sbjct: 59  DA----VSGTLRLFWTLLSKQEEM------VQKFVEEVLRINYKFLMSPIKTE-QRQ-PS 106

Query: 207 LRALDFGGS----YHSTRLLTP-EVPRNIEKLVLPETLCELYNLEKLDISDCFNLKELPE 261
           +    +       Y+  ++     V R    L L + L EL   + + I     +     
Sbjct: 107 MMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLI---DGVL---- 159

Query: 262 GIGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGRKACRLESLKNL 321
           G GK      +          M   I           F ++            LE L+ L
Sbjct: 160 GSGKTWVALDVC-LSYKVQCKMDFKI-----------FWLNLKN--CNSPETVLEMLQKL 205

Query: 322 EHLQVCGISRLGDVS--------DVGEAKRLELDKKKYLSSLT----LW-------FDKE 362
            +      +   D S         +    R  L  K Y + L     +        F+  
Sbjct: 206 LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLS 265

Query: 363 -------------EEEEGERRKNEDNQLLLEALRPPLNLKELEIEYYRGNTVFPSWMTSL 409
                        +             + L+     L   E++       ++   +    
Sbjct: 266 CKILLTTRFKQVTDFLSAATTT----HISLDHHSMTLTPDEVK-------SLLLKY---- 310

Query: 410 TNLKSLDLSSCENCEQLPPL----GKLQSLENLHIWRMESVKRVGDEFLGIESDHHGSSS 465
            + +  DL   E     P       +    + L  W         D +  +  D   +  
Sbjct: 311 LDCRPQDLPR-EVLTTNPRRLSIIAESIR-DGLATW---------DNWKHVNCDKLTTII 359

Query: 466 SSSVIIAFPKLKSLSIEVLREL 487
            SS       L  L     R++
Sbjct: 360 ESS-------LNVLEPAEYRKM 374

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 64.1 bits (156), Expect = 6e-11
 Identities = 37/338 (10%), Positives = 95/338 (28%), Gaps = 58/338 (17%)

Query: 115 NKIKEMNEELHDIATQKDIQNECFSMAINGSEEPNATNALDEKVRHLMLIFSKAASLP-I 173
           +          D     D+  E                  D+++    L+       P +
Sbjct: 357 HSETVSGRLFGDEELTPDMSEERKH--RIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEM 414

Query: 174 STLRVKRMRTLLINDHSLLNAAI--LEELFRELTSLRALD-----FGGSYHSTRLLTPEV 226
             ++     +L       L   I  + +  + LT L+ +      F     +        
Sbjct: 415 KPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANS 474

Query: 227 PRNIEKLVLPETLCELYNLEKLDISDCFNLKELPEGIGKLINVKHL-LNRGTNSLRYMPV 285
               +      +   L +L  +++ +C N+ +LP+ +  L  ++ L +    N       
Sbjct: 475 DYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIAC--NRGISAAQ 532

Query: 286 GIGRLTGLRTLGEFHVSAGGGVDGRKACRLESLKNLEHLQV--CGISRLGDVSDVGEAKR 343
                T L                      ++   ++   +    +      + + +  +
Sbjct: 533 LKADWTRLADD------------------EDTGPKIQIFYMGYNNLEEFPASASLQKMVK 574

Query: 344 LELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQL-LLEALRPPLNLKELEIEYYRGNTVF 402
           L          L                   N++  LEA    + L +L+++Y +   + 
Sbjct: 575 LG--------LLDCV---------------HNKVRHLEAFGTNVKLTDLKLDYNQIEEIP 611

Query: 403 PSWMTSLTNLKSLDLSSCENCEQLPPLGKLQSLENLHI 440
             +      ++ L  S     + +P +   +S+  +  
Sbjct: 612 EDFCAFTDQVEGLGFSHN-KLKYIPNIFNAKSVYVMGS 648

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 53.3 bits (128), Expect = 1e-07
 Identities = 36/255 (14%), Positives = 83/255 (32%), Gaps = 28/255 (10%)

Query: 238 TLCELYNLEKLDISDCFNLKELPEGIGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTLG 297
            L     +  L ++       +P+ IG+L  +K  L+ GT+S        G       + 
Sbjct: 318 DLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKV-LSFGTHSETVSGRLFGDEELTPDMS 376

Query: 298 EFHVSAGGGVDGRKACRLESLKNLEHLQVCGISRLGDVSDVGEAKRLELDKKKYLSSLTL 357
           E           +       L   + L +  + +   ++   E K ++ D +  L    +
Sbjct: 377 EERKHRIRMHYKK-----MFLDYDQRLNLSDLLQD-AINRNPEMKPIKKDSRISLKDTQI 430

Query: 358 WFD----KEEEEEGERRKN------EDNQLLLEALRPPLNLKELEIEYYRGNTVFPSWMT 407
                      +  +R          ++          ++ ++   +Y +         +
Sbjct: 431 GNLTNRITFISKAIQRLTKLQIIYFANSP--FTYDNIAVDWEDANSDYAKQYENEELSWS 488

Query: 408 SLTNLKSLDLSSCENCEQLPP-LGKLQSLENLHIWRMESVKRVGDEFLGIESDHHGSSSS 466
           +L +L  ++L +C N  QLP  L  L  L++L+I          +  +         +  
Sbjct: 489 NLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIA--------CNRGISAAQLKADWTRL 540

Query: 467 SSVIIAFPKLKSLSI 481
           +      PK++   +
Sbjct: 541 ADDEDTGPKIQIFYM 555

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 46.8 bits (111), Expect = 1e-05
 Identities = 20/211 (9%), Positives = 44/211 (20%), Gaps = 49/211 (23%)

Query: 235 LPETLCELYNLEKLDISDCFNLKELPEGIGKLINVKHLLNRGTNSLRYMPVGIGRLTGLR 294
           + + +  L  L+ +  ++          +          +          +    L  L 
Sbjct: 440 ISKAIQRLTKLQIIYFANS-PFTYDNIAVDWE----DANSDYAKQYENEELSWSNLKDLT 494

Query: 295 TLGEFHVSAGGGVDGRKACRLESLKNLEHLQVCG--ISRLGDVSDVGEAKRLELDKKKYL 352
            +  ++      +       L  L  L+ L +          +         + D    +
Sbjct: 495 DVELYNCPNMTQLPDF----LYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKI 550

Query: 353 SSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKELEIEYYRGNTVFPSWMTSLTNL 412
               +                 N L           +E                  +  L
Sbjct: 551 QIFYM---------------GYNNL-----------EEFPASASLQK---------MVKL 575

Query: 413 KSLDLSSCENC-EQLPPLGKLQSLENLHIWR 442
             LD     N    L   G    L +L +  
Sbjct: 576 GLLDCVH--NKVRHLEAFGTNVKLTDLKLDY 604

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 46.0 bits (109), Expect = 2e-05
 Identities = 36/264 (13%), Positives = 77/264 (29%), Gaps = 62/264 (23%)

Query: 198 EELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVLPETLCELYNLEKLDISDCFNLK 257
           E+       +  L F  +              ++ +        +Y +  +D S    + 
Sbjct: 612 EDFCAFTDQVEGLGFSHN-------------KLKYIPNIFNAKSVYVMGSVDFSYN-KIG 657

Query: 258 ELPEGIGKLINVKHL-----LNRGTNSLRYMPVGI-GRLTGLRTL-------GEFHVSAG 304
                I   ++         +    N ++  P  +    + + T+            ++ 
Sbjct: 658 SEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSL 717

Query: 305 GGVDGRKACRLESLKNLEHLQVCGISRLGDVSDVGEAKRLELDKKKYLSSLTLWFDKEEE 364
              DG      ++   L  + +   ++L  +SD   A  L      YLS++ +       
Sbjct: 718 KPKDGN----YKNTYLLTTIDLRF-NKLTSLSDDFRATTL-----PYLSNMDV------- 760

Query: 365 EEGERRKNEDNQL--LLEALRPPLNLKELEIEYYR---GN---TVFPSWMTSLTNLKSLD 416
                     N              LK   I + R   GN     +P+ +T+  +L  L 
Sbjct: 761 --------SYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQ 812

Query: 417 LSSCENCEQLPPLGKLQSLENLHI 440
           + S  +  ++        L  L I
Sbjct: 813 IGSN-DIRKVDE-KLTPQLYILDI 834

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 45.3 bits (107), Expect = 4e-05
 Identities = 19/131 (14%), Positives = 42/131 (32%), Gaps = 15/131 (11%)

Query: 169 ASLPISTLRVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPR 228
            S  +   +     T+ ++ + +       ELF   + +  +    +     L+T  +P 
Sbjct: 663 ISCSMDDYKGINASTVTLSYNEI--QKFPTELFATGSPISTIILSNN-----LMT-SIPE 714

Query: 229 NIEKLVLPETLCELYNLEKLDISDCFNLKELPEGI--GKLINVKHL-LNRGTNSLRYMPV 285
           N  K          Y L  +D+     L  L +      L  + ++ ++   N     P 
Sbjct: 715 NSLKP-KDGNYKNTYLLTTIDLRFN-KLTSLSDDFRATTLPYLSNMDVSY--NCFSSFPT 770

Query: 286 GIGRLTGLRTL 296
                + L+  
Sbjct: 771 QPLNSSQLKAF 781

>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare} Length = 115

 Score = 55.2 bits (133), Expect = 8e-10
 Identities = 29/116 (25%), Positives = 50/116 (43%), Gaps = 20/116 (17%)

Query: 1   VKLVVGVEKEVKSLTSHLQAIQAVLDDAEEKQVK--DKAVRHWLGRLKYASYDIEDVLDE 58
            KL  GV+K ++ L   L+++ A L    E   +  D   + W   ++  SY IEDV+D+
Sbjct: 18  FKLHKGVKKNIEDLGKELESMNAALIKIGEVPREQLDSQDKLWADEVRELSYVIEDVVDK 77

Query: 59  WITGRRKLQIEGGIGENALIAPHKKKKVRFCFRASCLGFKTEEFGFKQVFLRHDIA 114
           ++     +Q++G          +  K      R + L         K+V  +H IA
Sbjct: 78  FL-----VQVDGIKS-----DDNNNKFKGLMKRTTEL--------LKKVKHKHGIA 115

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 56.2 bits (136), Expect = 1e-08
 Identities = 52/259 (20%), Positives = 79/259 (30%), Gaps = 52/259 (20%)

Query: 197 LEEL---FRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVLPETLCELYNLEKLDISDC 253
           L E+      + S        S    R   P      E  V     C      +L++++ 
Sbjct: 23  LTEMPVEAENVKSKTEYYNAWS-EWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNL 81

Query: 254 FNLKELPEGIGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGRKAC 313
             L  LPE    L +    L    NSL  +P     L  L                    
Sbjct: 82  -GLSSLPELPPHLES----LVASCNSLTELPELPQSLKSLLVDNNNL------------K 124

Query: 314 RLESL-KNLEHLQV--CGISRLGDVSDVGEAKRLELDK------KKYLSSLT-LWFDKEE 363
            L  L   LE+L V    + +L ++ +    K +++D            SL  +      
Sbjct: 125 ALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAG--- 181

Query: 364 EEEGERRKNEDNQLLLEALRPPLNLKELEIEYYRGN--TVFPSWMTSLTNLKSLDLSSCE 421
                     +NQL  E L    NL  L   Y   N     P       +L+S+   +  
Sbjct: 182 ----------NNQL--EELPELQNLPFLTAIYADNNSLKKLPD---LPLSLESIVAGNNI 226

Query: 422 NCEQLPPLGKLQSLENLHI 440
             E+LP L  L  L  ++ 
Sbjct: 227 L-EELPELQNLPFLTTIYA 244

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 49.2 bits (118), Expect = 2e-06
 Identities = 50/254 (19%), Positives = 85/254 (33%), Gaps = 65/254 (25%)

Query: 197 LEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKL--------VLPETLCELYNLEKL 248
           L EL + L SL   +     +   L   ++P  +E L         LPE L     L+ +
Sbjct: 106 LPELPQSLKSLLVDNN----NLKAL--SDLPPLLEYLGVSNNQLEKLPE-LQNSSFLKII 158

Query: 249 DISDCFNLKELPEGIGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFHVSAGGGVD 308
           D+ +  +LK+LP+    L      +  G N L  +P  +  L  L  +   +        
Sbjct: 159 DVDNN-SLKKLPDLPPSLEF----IAAGNNQLEELPE-LQNLPFLTAI---YADN----- 204

Query: 309 GRKACRLESL----KNLEHLQVCGISRLGDVSDVGEAKRLELDKKKYLSSLTLWFDKEEE 364
                 L+ L     +LE +     + L ++ ++     L           T++ D    
Sbjct: 205 ----NSLKKLPDLPLSLESIVAGN-NILEELPELQNLPFLT----------TIYAD---- 245

Query: 365 EEGERRKNEDNQLLLEALRPPL-NLKELEIEYYRGNTVFPSWMTSLTNLKSLDLSSCENC 423
                    +N L  + L     +L+ L +         P    SLT L   +       
Sbjct: 246 ---------NNLL--KTLPDLPPSLEALNVRDNYLTD-LPELPQSLTFLDVSENIFSGLS 293

Query: 424 EQLPPLGKLQSLEN 437
           E  P L  L +  N
Sbjct: 294 ELPPNLYYLNASSN 307

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 43.1 bits (102), Expect = 2e-04
 Identities = 54/259 (20%), Positives = 77/259 (29%), Gaps = 74/259 (28%)

Query: 197 LEEL--FRELTSLRALDFGGSYHSTRLLT-PEVPRNIEKLVL-------PETLCELYNLE 246
           LEEL   + L  L A+       +  L   P++P ++E +V           L  L  L 
Sbjct: 185 LEELPELQNLPFLTAIYA----DNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLT 240

Query: 247 KLDISDCFNLKELPEGIGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFHVSAGGG 306
            +   +   LK LP+    L      LN   N L  +P     LT L             
Sbjct: 241 TIYADNN-LLKTLPDLPPSLEA----LNVRDNYLTDLPELPQSLTFLDVSENIF------ 289

Query: 307 VDGRKACRLESL-KNLEHLQV--CGISRLGDVSDVGEAKRLELDKKKYLSSLTLWFDKEE 363
                   L  L  NL +L      I  L              D    L  L +      
Sbjct: 290 ------SGLSELPPNLYYLNASSNEIRSL-------------CDLPPSLEELNV------ 324

Query: 364 EEEGERRKNEDNQLLLEALRPPLNLKELEIEYYRGN--TVFPSWMTSLTNLKSLDLSSCE 421
                     +N+L    L  P     LE      N     P       NLK L +    
Sbjct: 325 ---------SNNKL--IEL--PALPPRLERLIASFNHLAEVPE---LPQNLKQLHVEYNP 368

Query: 422 NCEQLPPLGKLQSLENLHI 440
              + P +   +S+E+L +
Sbjct: 369 L-REFPDI--PESVEDLRM 384

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 52.3 bits (126), Expect = 2e-07
 Identities = 39/258 (15%), Positives = 73/258 (28%), Gaps = 29/258 (11%)

Query: 196 ILEELFRELTSLRALDFGG---SYHSTRLLTPEVPRNIEKLVL---------PETLCELY 243
                  +L +L+ L           +  L      +++KL L         P     + 
Sbjct: 136 TKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIG 195

Query: 244 NLEKLDISDCFNLKELPEGIGKLINVKHL--LNRGTNSLRYMPVGIGRLTGLRTLGEFHV 301
            L  L +++      L E +   +    +  L+   + L               L    +
Sbjct: 196 RLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDL 255

Query: 302 SAGGGVDGRKACRLESLKNLEHLQVCG--ISRLGDVSDVGEAKRLELDKKKYLSSLTLWF 359
           S    ++         L  LE+  +    I  L   S         L     +  L L  
Sbjct: 256 S-YNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHS---------LHGLFNVRYLNL-- 303

Query: 360 DKEEEEEGERRKNEDNQLLLEALRPPLNLKELEIEYYRGNTVFPSWMTSLTNLKSLDLSS 419
            K    +         ++   + +    L+ L +E      +  +  T L NLK L LS+
Sbjct: 304 -KRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSN 362

Query: 420 CENCEQLPPLGKLQSLEN 437
                +        SL +
Sbjct: 363 SFTSLRTLTNETFVSLAH 380

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 45.4 bits (108), Expect = 3e-05
 Identities = 45/228 (19%), Positives = 83/228 (36%), Gaps = 34/228 (14%)

Query: 196 ILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVLPETLCELYNLEKLDISDCFN 255
           I  + F  L  L  LD G +              I + +  +    L N+ ++ +S    
Sbjct: 396 IESDAFSWLGHLEVLDLGLN-------------EIGQELTGQEWRGLENIFEIYLSYN-K 441

Query: 256 LKELPEG-IGKLINVKHL-LNRGTNSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGRKAC 313
             +L       + +++ L L R   +L+ +         LR L    +S    +      
Sbjct: 442 YLQLTRNSFALVPSLQRLMLRR--VALKNVDSSPSPFQPLRNLTILDLS-NNNIANINDD 498

Query: 314 RLESLKNLEHLQVCG--ISRLGDVSDVGEAKRLELDKKKYLSSLTLWFDKEEEEEGERRK 371
            LE L+ LE L +    ++RL   ++ G      L    +L  L L              
Sbjct: 499 MLEGLEKLEILDLQHNNLARLWKHANPGG-PIYFLKGLSHLHILNL------------ES 545

Query: 372 NEDNQLLLEALRPPLNLKELEIEYYRGNTVFPSWMTSLTNLKSLDLSS 419
           N  +++ +E  +    LK +++     NT+  S   +  +LKSL+L  
Sbjct: 546 NGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQK 593

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 45.0 bits (107), Expect = 4e-05
 Identities = 51/286 (17%), Positives = 93/286 (32%), Gaps = 65/286 (22%)

Query: 196 ILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKL------------VLPETLCELY 243
           +    F   + L +LD G +  S   L PE+ + +  L            +  +T     
Sbjct: 40  LPAANFTRYSQLTSLDVGFNTISK--LEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCT 97

Query: 244 NLEKLDISDCFNLKELPEG-IGKLINVKHL-LNRGTNSLRYMPVG-IGRLTGLRTLG--- 297
           NL +L +    +++++      K  N+  L L+   N L    +G   +L  L+ L    
Sbjct: 98  NLTELHLMSN-SIQKIKNNPFVKQKNLITLDLSH--NGLSSTKLGTQVQLENLQELLLSN 154

Query: 298 -EFHVSAGGGVDGRKACRLESL---------------KNLEHLQVCGISRLGDVSDVGEA 341
            +        +D      L+ L                 +  L    ++ +     + E 
Sbjct: 155 NKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEK 214

Query: 342 KRLELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQL------LLEALRPPLNLKELEIEY 395
             LEL     + +L+L                ++QL          L+   NL  L++ Y
Sbjct: 215 LCLELANTS-IRNLSL---------------SNSQLSTTSNTTFLGLKWT-NLTMLDLSY 257

Query: 396 YRGNTVFPSWMTSLTNLKSLDLSSCENCEQLPP--LGKLQSLENLH 439
              N V       L  L+   L    N + L    L  L ++  L+
Sbjct: 258 NNLNVVGNDSFAWLPQLEYFFLEYN-NIQHLFSHSLHGLFNVRYLN 302

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 51.6 bits (124), Expect = 4e-07
 Identities = 31/299 (10%), Positives = 86/299 (28%), Gaps = 71/299 (23%)

Query: 170 SLPISTLRVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRN 229
           +  +    +K +  + + +   L    L    + L  ++ ++        R ++    + 
Sbjct: 240 TEDLKWDNLKDLTDVEVYNCPNLT--KLPTFLKALPEMQLINV----ACNRGIS--GEQL 291

Query: 230 IEKLVLPETLCELYNLEKLDISDCFNLKEL--PEGIGKLINVKHL-LNRGTNSLRYMPVG 286
            +             ++ + I    NLK       + K+  +  L      N L      
Sbjct: 292 KDDWQALADAPVGEKIQIIYIGYN-NLKTFPVETSLQKMKKLGMLECLY--NQLEGKLPA 348

Query: 287 IGRLTGLRTLG-------EFHVSAGGGVDGRKACRLESLKNLEHLQVCGISRLGDVSDVG 339
            G    L +L        E   +  G             + +E+L     ++L  + ++ 
Sbjct: 349 FGSEIKLASLNLAYNQITEIPANFCG-----------FTEQVENLSFAH-NKLKYIPNIF 396

Query: 340 EAKRLELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQL----------LLEALRPPLNLK 389
           +AK +       +S++                   N++          L       +N+ 
Sbjct: 397 DAKSV-----SVMSAIDF---------------SYNEIGSVDGKNFDPLDPTPFKGINVS 436

Query: 390 ELEIEYYRGNTVFPSWMTSLTNLKSLDLSSC-------ENCEQLPP-LGKLQSLENLHI 440
            + +   + +       ++ + L S++L           + +           L ++ +
Sbjct: 437 SINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDL 495

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 50.0 bits (120), Expect = 1e-06
 Identities = 24/137 (17%), Positives = 54/137 (39%), Gaps = 15/137 (10%)

Query: 163 LIFSKAASLPISTLRVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLL 222
           +       L  +  +   + ++ ++++ +  +   +ELF   + L +++  G+     +L
Sbjct: 417 VDGKNFDPLDPTPFKGINVSSINLSNNQI--SKFPKELFSTGSPLSSINLMGN-----ML 469

Query: 223 TPEVPRNIEKLVLPETLCELYNLEKLDISDCFNLKELPEGI--GKLINVKHL-LNRGTNS 279
           T E+P+N  K    E     Y L  +D+     L +L +      L  +  + L+   NS
Sbjct: 470 T-EIPKNSLKD-ENENFKNTYLLTSIDLRFN-KLTKLSDDFRATTLPYLVGIDLSY--NS 524

Query: 280 LRYMPVGIGRLTGLRTL 296
               P      + L+  
Sbjct: 525 FSKFPTQPLNSSTLKGF 541

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 48.9 bits (117), Expect = 2e-06
 Identities = 35/286 (12%), Positives = 76/286 (26%), Gaps = 93/286 (32%)

Query: 201 FRELTSLRALDFGGSYHSTRLLTPEVPRNIEKL----------VLPETLCELYNLEKLDI 250
              LT LR    G S         E      +                   L +L  +++
Sbjct: 202 VMRLTKLRQFYMGNSP-----FVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEV 256

Query: 251 SDCFNLKELPEGIGKLINVKHL-LNRGTNSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDG 309
            +C NL +LP  +  L  ++ + +    N              L                
Sbjct: 257 YNCPNLTKLPTFLKALPEMQLINVAC--NRGISGEQLKDDWQALADAP------------ 302

Query: 310 RKACRLESLKNLEHLQV--CGISRLGDVSDVGEAKRL---------------ELDKKKYL 352
                    + ++ + +    +      + + + K+L                   +  L
Sbjct: 303 -------VGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKL 355

Query: 353 SSLTLWFDKEEEEEGERRKNEDNQL------LLEALRPPLNLKELEIEYYRGN--TVFPS 404
           +SL L                 NQ+                ++ L       N     P+
Sbjct: 356 ASLNLA---------------YNQITEIPANFCGFTE---QVENLSFA---HNKLKYIPN 394

Query: 405 W--MTSLTNLKSLDLS-------SCENCEQLPP-LGKLQSLENLHI 440
                S++ + ++D S         +N + L P   K  ++ ++++
Sbjct: 395 IFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINL 440

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 48.9 bits (117), Expect = 3e-06
 Identities = 28/215 (13%), Positives = 68/215 (31%), Gaps = 34/215 (15%)

Query: 234 VLPETLCELYNLEKLDISD----CFNLKELPEGIGKLINVKHLLNRGTNSLRYMPVGIGR 289
            +P+ + +L  LE L +             P+GI   ++ +       +  +       R
Sbjct: 96  RVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPR 155

Query: 290 LTGLRTLGEFHVSAGGGVDGRKACRLESLKNLEHLQVCGIS-RLGDVSDVGEAKRLELDK 348
                 + +           +K+ +  S   L+  Q+  +S  +  VS         + +
Sbjct: 156 EDFSDLIKDC----INSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSK-------AVMR 204

Query: 349 KKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKELEIEYYRGNTVFPSWMTS 408
              L    +                ++  +  A       +    EY +          +
Sbjct: 205 LTKLRQFYMG---------------NSPFV--AENICEAWENENSEYAQQYKTEDLKWDN 247

Query: 409 LTNLKSLDLSSCENCEQLPP-LGKLQSLENLHIWR 442
           L +L  +++ +C N  +LP  L  L  ++ +++  
Sbjct: 248 LKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVAC 282

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 47.0 bits (112), Expect = 1e-05
 Identities = 20/257 (7%), Positives = 68/257 (26%), Gaps = 62/257 (24%)

Query: 201 FRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVLPETLCELYNLEKLDISDCFNLKELP 260
             +LT L  L  G                      P+ +    + E+         K   
Sbjct: 101 IGQLTELEVLALGSHGEKVNERLF----------GPKGISANMSDEQKQKMRMHYQKTFV 150

Query: 261 EGIGKLI--NVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGRKACRL--- 315
           +   +    ++           + +            +G+                +   
Sbjct: 151 DYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLS------------NNITFV 198

Query: 316 -ESLKNLEHLQVCGIS--RLGDVSDVGEAKRLELDKKKYLSSLTLWFDKEEEEEGERRKN 372
            +++  L  L+   +        +     +    +  +   +  L +             
Sbjct: 199 SKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKW------------- 245

Query: 373 EDNQLLLEALRPPLNLKELEIEYYRGNTVFPSWMTSLTNLKSLDLSSC---------ENC 423
             + L         +L ++E+      T  P+++ +L  ++ ++++           ++ 
Sbjct: 246 --DNLK--------DLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDW 295

Query: 424 EQLPPLGKLQSLENLHI 440
           + L      + ++ ++I
Sbjct: 296 QALADAPVGEKIQIIYI 312

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 42.0 bits (99), Expect = 4e-04
 Identities = 41/271 (15%), Positives = 72/271 (26%), Gaps = 70/271 (25%)

Query: 196 ILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVLPETLCELYNLEKLDIS---- 251
           I          +  L F  +              ++ +        +  +  +D S    
Sbjct: 368 IPANFCGFTEQVENLSFAHN-------------KLKYIPNIFDAKSVSVMSAIDFSYNEI 414

Query: 252 ---DCFNLKELPEGIGKLINVKHL-LNRGTNSLRYMPVGI-GRLTGLRTL-------GEF 299
              D  N   L     K INV  + L+   N +   P  +    + L ++        E 
Sbjct: 415 GSVDGKNFDPLDPTPFKGINVSSINLSN--NQISKFPKELFSTGSPLSSINLMGNMLTEI 472

Query: 300 HVSAGGGVDGRKACRLESLKNLEHLQVCGIS--RLGDVSDVGEAKRLELDKKKYLSSLTL 357
             ++            E+ KN   L    +   +L  +SD             YL  + L
Sbjct: 473 PKNSLKDE-------NENFKNTYLLTSIDLRFNKLTKLSD-----DFRATTLPYLVGIDL 520

Query: 358 WFDKEEEEEGERRKNEDNQL--LLEALRPPLNLKELEIEYYR---GN---TVFPSWMTSL 409
                            N              LK   I   R   GN     +P  +T  
Sbjct: 521 ---------------SYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLC 565

Query: 410 TNLKSLDLSSCENCEQLPPLGKLQSLENLHI 440
            +L  L + S  +  ++       ++  L I
Sbjct: 566 PSLTQLQIGSN-DIRKVNE-KITPNISVLDI 594

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 49.7 bits (119), Expect = 1e-06
 Identities = 39/257 (15%), Positives = 82/257 (31%), Gaps = 28/257 (10%)

Query: 188 DHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVLPETLCELYNLEK 247
             +      +  LF  LT+L+ L  G     + +                    L +L +
Sbjct: 106 MGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIR-------------RIDFAGLTSLNE 152

Query: 248 LDISDCFNLKELPEG-IGKLINVKHL-LNRGTNSLRYMPVGI-GRLTGLRTLGEFHVSAG 304
           L+I    +L+      +  + ++ HL L+   +   ++       L+ +R L     +  
Sbjct: 153 LEIKAL-SLRNYQSQSLKSIRDIHHLTLHL--SESAFLLEIFADILSSVRYLELRDTN-L 208

Query: 305 GGVDGRKACRLESLKNLEHLQVCGISRLGDVSDVGEAKRLELDKKKYLSSLTLWF-DKEE 363
                      E    ++ L     S L D S       L    +  L    + F D   
Sbjct: 209 ARFQFSPLPVDEVSSPMKKLAFR-GSVLTDES----FNELLKLLRYILELSEVEFDDCTL 263

Query: 364 EEEGERRKNEDNQLLLEALRPPLNLKELEIEYYRGNTVFPSWMTSLTNLKSLDLSSCENC 423
              G+   +E + +        + ++ L I  +       +  + L  +K + + +  + 
Sbjct: 264 NGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVEN--SK 321

Query: 424 EQLPPLGKLQSLENLHI 440
             L P    Q L++L  
Sbjct: 322 VFLVPCSFSQHLKSLEF 338

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 41.2 bits (97), Expect = 6e-04
 Identities = 36/231 (15%), Positives = 64/231 (27%), Gaps = 63/231 (27%)

Query: 224 PEVPRNIEKLVL---------PETLCELYNLEKLDISDCFNLKELPEGI-GKLINVKHL- 272
             +   ++ L L            L    NL+ L +     +  +       L +++HL 
Sbjct: 22  SGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSS-RINTIEGDAFYSLGSLEHLD 80

Query: 273 LNRGTNSLRYMPVG-IGRLTGLRTLGEFHVSAGGGVDGRKACRLESLKNLEHLQVCGISR 331
           L+   N L  +     G L+ L+ L                          +L       
Sbjct: 81  LSD--NHLSSLSSSWFGPLSSLKYL--------------------------NLMGNPYQT 112

Query: 332 LGDVSDVGEAKRLELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKEL 391
           LG  S       L+          TL                 +++         +L EL
Sbjct: 113 LGVTSLFPNLTNLQ----------TLRIG---------NVETFSEIRRIDFAGLTSLNEL 153

Query: 392 EIEYYRGNTVFPSWMTSLTNLKSLDLSSCENCEQLPP--LGKLQSLENLHI 440
           EI+           + S+ ++  L L   E+   L       L S+  L +
Sbjct: 154 EIKALSLRNYQSQSLKSIRDIHHLTLHLSES-AFLLEIFADILSSVRYLEL 203

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 47.9 bits (115), Expect = 4e-06
 Identities = 42/251 (16%), Positives = 85/251 (33%), Gaps = 57/251 (22%)

Query: 204 LTSLRALDFGGSYHSTRLLTPEVPRNIEKLVL-------PETLCELYNLEKLDISDCFNL 256
           L          +   T ++T E   +I KLV+        + +  L NLE L+++    +
Sbjct: 21  LAEGIRAVLQKA-SVTDVVTQEELESITKLVVAGEKVASIQGIEYLTNLEYLNLNGN-QI 78

Query: 257 KELPEGIGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEF------HVSAGGGVDGR 310
            ++   +  L+ + +L     N +  +   +  LT LR L          +S        
Sbjct: 79  TDISP-LSNLVKLTNLYIGT-NKITDIS-ALQNLTNLREL-YLNEDNISDISP------- 127

Query: 311 KACRLESLKNLEHLQVCGISRLGDVSDVGEAKRLELDKKKYLSSLTLWFDKEEEEEGERR 370
               L +L  +  L +     L D+S +     L            L             
Sbjct: 128 ----LANLTKMYSLNLGANHNLSDLSPLSNMTGLN----------YLTVT---------- 163

Query: 371 KNEDNQL-LLEALRPPLNLKELEIEYYRGNTVFPSWMTSLTNLKSLDLSSCENCEQLPPL 429
              ++++  +  +    +L  L + Y +   + P  + SLT+L        +    + P+
Sbjct: 164 ---ESKVKDVTPIANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQI-TDITPV 217

Query: 430 GKLQSLENLHI 440
             +  L +L I
Sbjct: 218 ANMTRLNSLKI 228

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 46.8 bits (112), Expect = 1e-05
 Identities = 42/255 (16%), Positives = 81/255 (31%), Gaps = 57/255 (22%)

Query: 201 FRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVLPETLCELYNLEKLDISDCFNLKELP 260
              LT + +L+ G               N   L     L  +  L  L +++   +K++ 
Sbjct: 128 LANLTKMYSLNLGA--------------N-HNLSDLSPLSNMTGLNYLTVTES-KVKDVT 171

Query: 261 EGIGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGRKACRLESLKN 320
             I  L ++  L +   N +  +   +  LT L                 +   +  + N
Sbjct: 172 P-IANLTDLYSL-SLNYNQIEDIS-PLASLTSLHYFT---------AYVNQITDITPVAN 219

Query: 321 LEHLQVCGIS--RLGDVSDVGEAKRLE-----------LDKKKYLSSLT-LWFDKEEEEE 366
           +  L    I   ++ D+S +    +L            ++  K L+ L  L         
Sbjct: 220 MTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVG------ 273

Query: 367 GERRKNEDNQLL-LEALRPPLNLKELEIEYYRGNTVFPSWMTSLTNLKSLDLSSCENCEQ 425
                   NQ+  +  L     L  L +   +        +  LTNL +L LS   +   
Sbjct: 274 -------SNQISDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQN-HITD 325

Query: 426 LPPLGKLQSLENLHI 440
           + PL  L  +++   
Sbjct: 326 IRPLASLSKMDSADF 340

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 44.1 bits (105), Expect = 5e-05
 Identities = 31/208 (14%), Positives = 69/208 (33%), Gaps = 43/208 (20%)

Query: 237 ETLCELYNLEKLDISDCFNLKELPEGIGKLINVKHL-LNRGTNSLRYMPVGIGRLTGLRT 295
               +L    +  +    ++ ++     +L ++  L +      +  +  GI  LT L  
Sbjct: 16  FPDADLAEGIRAVLQKA-SVTDVV-TQEELESITKLVVAG--EKVASIQ-GIEYLTNLEY 70

Query: 296 LGEFHVSAGGGVDGRKACRLESLKNLEHLQVCGIS--RLGDVSDVGEAKRLELDKKKYLS 353
           L          ++G +   +  L NL  L    I   ++ D+S +     L         
Sbjct: 71  LN---------LNGNQITDISPLSNLVKLTNLYIGTNKITDISALQNLTNLR-------- 113

Query: 354 SLTLWFDKEEEEEGERRKNEDNQLL-LEALRPPLNLKELEIEYYRGNTVFPSWMTSLTNL 412
            L L                ++ +  +  L     +  L +     N    S ++++T L
Sbjct: 114 ELYLN---------------EDNISDISPLANLTKMYSLNL-GANHNLSDLSPLSNMTGL 157

Query: 413 KSLDLSSCENCEQLPPLGKLQSLENLHI 440
             L ++     + + P+  L  L +L +
Sbjct: 158 NYLTVTES-KVKDVTPIANLTDLYSLSL 184

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 42.5 bits (101), Expect = 2e-04
 Identities = 45/216 (20%), Positives = 79/216 (36%), Gaps = 45/216 (20%)

Query: 232 KLVLPETLCELYNLEKLDISDCFNLKELPEGIGKLINVKHL-LNRGTNSLRYMPVGIGRL 290
            +    T  EL ++ KL ++    +  +  GI  L N+++L LN   N +  +   +  L
Sbjct: 33  SVTDVVTQEELESITKLVVAGE-KVASIQ-GIEYLTNLEYLNLNG--NQITDIS-PLSNL 87

Query: 291 TGLRTLGEFHVSAGGGVDGRKACRLESLKNLEHLQVCGIS--RLGDVSDVGEAKRLELDK 348
             L  L          +   K   + +L+NL +L+   ++   + D+S +    ++    
Sbjct: 88  VKLTNLY---------IGTNKITDISALQNLTNLRELYLNEDNISDISPLANLTKMY--- 135

Query: 349 KKYLSSLTLWFDKEEEEEGERRKNEDNQL--LLEALRPPLNLKELEIEYYRGNTVFPSWM 406
                SL L                 N     L  L     L  L +   +   V P  +
Sbjct: 136 -----SLNLGA---------------NHNLSDLSPLSNMTGLNYLTVTESKVKDVTP--I 173

Query: 407 TSLTNLKSLDLSSCENCEQLPPLGKLQSLENLHIWR 442
            +LT+L SL L+     E + PL  L SL     + 
Sbjct: 174 ANLTDLYSLSLNYN-QIEDISPLASLTSLHYFTAYV 208

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 48.0 bits (115), Expect = 5e-06
 Identities = 38/223 (17%), Positives = 72/223 (32%), Gaps = 50/223 (22%)

Query: 228 RNIEKLVL-------PETLCELYNLEKLDISDCFNLKELPEGIGKLINVKHL-LNRGTNS 279
               K VL         +  +L  +  L       +K + +G+  L N+  +  +   N 
Sbjct: 24  AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRL-GIKSI-DGVEYLNNLTQINFSN--NQ 79

Query: 280 LRYMPVGIGRLTGLRTLGEFHVSAGGGVDGRKACRLESLKNLEHLQV--CGISRLGDVSD 337
           L  +   +  LT L  +          ++  +   +  L NL +L       +++ D+  
Sbjct: 80  LTDIT-PLKNLTKLVDIL---------MNNNQIADITPLANLTNLTGLTLFNNQITDIDP 129

Query: 338 VGEAKRLELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKELEIEYYR 397
           +     L          L L                 N +    +     L  L+   + 
Sbjct: 130 LKNLTNLN--------RLEL---------------SSNTI--SDISALSGLTSLQQLSFG 164

Query: 398 GNTVFPSWMTSLTNLKSLDLSSCENCEQLPPLGKLQSLENLHI 440
                   + +LT L+ LD+SS      +  L KL +LE+L  
Sbjct: 165 NQVTDLKPLANLTTLERLDISSN-KVSDISVLAKLTNLESLIA 206

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 45.3 bits (108), Expect = 3e-05
 Identities = 50/251 (19%), Positives = 87/251 (34%), Gaps = 53/251 (21%)

Query: 201 FRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVL-------PETLCELYNLEKLDISDC 253
              LTSL+ L F      T L        +E+L +          L +L NLE L  ++ 
Sbjct: 152 LSGLTSLQQLSF--GNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNN 209

Query: 254 FNLKELPEGIGKLINVKHL-LNRGTNSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGRKA 312
             + ++   +G L N+  L LN   N L+ +   +  LT L  L          +   + 
Sbjct: 210 -QISDIT-PLGILTNLDELSLNG--NQLKDIG-TLASLTNLTDL---------DLANNQI 255

Query: 313 CRLESLKNLEHLQVCGIS--RLGDVSDVGEAKRLELDKKKYLSSLTLWFDKEEEEEGERR 370
             L  L  L  L    +   ++ ++S +     L            L             
Sbjct: 256 SNLAPLSGLTKLTELKLGANQISNISPLAGLTALT----------NLEL----------- 294

Query: 371 KNEDNQL-LLEALRPPLNLKELEIEYYRGNTVFPSWMTSLTNLKSLDLSSCENCEQLPPL 429
              +NQL  +  +    NL  L + +   + + P  ++SLT L+ L   +      +  L
Sbjct: 295 --NENQLEDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNN-KVSDVSSL 349

Query: 430 GKLQSLENLHI 440
             L ++  L  
Sbjct: 350 ANLTNINWLSA 360

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 47.5 bits (113), Expect = 7e-06
 Identities = 54/329 (16%), Positives = 97/329 (29%), Gaps = 57/329 (17%)

Query: 132 DIQNECFSMAINGSEEPNATNALDEKVRHLMLIFSKAASLPISTLR-VKRMRTLLINDHS 190
           ++ ++   + I    +  A   L   +R L L  SK   L     + +  +  L +    
Sbjct: 54  ELGSQYTPLTI----DKEAFRNL-PNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCG 108

Query: 191 LLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVLPETLCELYNLEKLDI 250
           L +A + +  FR L +L  LD   +              I  L L  +  +L +L+ +D 
Sbjct: 109 LSDAVLKDGYFRNLKALTRLDLSKN-------------QIRSLYLHPSFGKLNSLKSIDF 155

Query: 251 SDCFNLKELPEGIGKLINVKHL--LNRGTNSLRYMP----VGIGRLTGLRTLGEFHVS-- 302
           S    +  + E   + +  K L   +   NSL                   L    VS  
Sbjct: 156 SSN-QIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGN 214

Query: 303 ---------AGGGVDGRKACRLESLKNLEHLQVCGISRLGDVSDVGEAKRLELDKKKYLS 353
                        +   +A  L    ++      G   + D              +  + 
Sbjct: 215 GWTVDITGNFSNAISKSQAFSLILAHHIMGAG-FGFHNIKDPD----QNTFAGLARSSVR 269

Query: 354 SLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKELEIEYYRGNTVFPSWMTSLTNLK 413
            L L                   L         +LK L + Y + N +       L NL+
Sbjct: 270 HLDL------------SHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQ 317

Query: 414 SLDLSSCENCEQLPP--LGKLQSLENLHI 440
            L+LS      +L       L  +  + +
Sbjct: 318 VLNLSYN-LLGELYSSNFYGLPKVAYIDL 345

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 42.9 bits (101), Expect = 2e-04
 Identities = 52/336 (15%), Positives = 109/336 (32%), Gaps = 49/336 (14%)

Query: 133 IQNECFSMAINGSEEPNATNALDEKVRHLMLIFSKAASLPIST---LRVKRMRTLLINDH 189
                FS AI+ S+  +    L   +      F        +T   L    +R L ++  
Sbjct: 219 DITGNFSNAISKSQAFS--LILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHG 276

Query: 190 SLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEV---PRNIEKLVL---------PE 237
            + +  +   +F  L  L+ L+   +Y+    +  E      N++ L L           
Sbjct: 277 FVFS--LNSRVFETLKDLKVLNL--AYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSS 332

Query: 238 TLCELYNLEKLDISDCFNLKELPEGI-GKLINVKHL--------LNRGTNSLRYMPVGIG 288
               L  +  +D+    ++  + +     L  ++ L              S+  + +   
Sbjct: 333 NFYGLPKVAYIDLQKN-HIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGN 391

Query: 289 RLTGLRTLG----EFHVSAGGGVDGRKACRLESLKNLEHLQVCGISRLGDVSDVGEAKRL 344
           +L  L  +       H+S     +      L  + +L+ L +   +R    S        
Sbjct: 392 KLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQ-NRFSSCSGDQTPSEN 450

Query: 345 ELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKELEIEYYRGNTVFPS 404
              ++ +L    L            +   + +L  +      +L+ L + +   N++ P 
Sbjct: 451 PSLEQLFLGENML------------QLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPG 498

Query: 405 WMTSLTNLKSLDLSSCENCEQLPPLGKLQSLENLHI 440
             + LT L+ L L+S      L       +LE L I
Sbjct: 499 VFSHLTALRGLSLNSN-RLTVLSHNDLPANLEILDI 533

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 46.9 bits (111), Expect = 1e-05
 Identities = 25/112 (22%), Positives = 41/112 (36%), Gaps = 20/112 (17%)

Query: 197 LEELFRELTSLRALDFGGSYHSTRLLT-PEVPRNIEKL--------VLPETLCELYNLEK 247
           L  L      L  ++        +L   PE+P ++E L         LPE      +LE 
Sbjct: 132 LTMLPELPALLEYINADN----NQLTMLPELPTSLEVLSVRNNQLTFLPE---LPESLEA 184

Query: 248 LDISDCFNLKELPEGIGKLINVKHL---LNRGTNSLRYMPVGIGRLTGLRTL 296
           LD+S    L+ LP    +  + +          N + ++P  I  L    T+
Sbjct: 185 LDVSTNL-LESLPAVPVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTI 235

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 46.1 bits (109), Expect = 2e-05
 Identities = 52/277 (18%), Positives = 85/277 (30%), Gaps = 81/277 (29%)

Query: 176 LRVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVL 235
           L +    +L  N      +    + F                  +   P   RN    +L
Sbjct: 5   LPINNNFSLSQNSFYNTISGTYADYFSAWDKW-----------EKQALPGENRNEAVSLL 53

Query: 236 PETLCELYNLEKLDISDCFNLKELPEGIGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRT 295
            E  C +    +L ++   NL  LP+ +   I V   L    N+L  +P     L  L  
Sbjct: 54  KE--CLINQFSELQLNRL-NLSSLPDNLPPQITV---LEITQNALISLPELPASLEYLDA 107

Query: 296 LGEFHVSAGGGVDGRKACRLESL----KNLEHLQVCG--ISRLGDVSDVGEAKRLELDKK 349
                             RL +L     +L+HL V    ++ L +       + +  D  
Sbjct: 108 CD---------------NRLSTLPELPASLKHLDVDNNQLTMLPE--LPALLEYINAD-- 148

Query: 350 KYLSSLTLWFDKEEEEEGERRKNEDNQL--LLEALRPPLNLKELEIEYYRGN--TVFPSW 405
                                   +NQL  L E      +L+ L +   R N  T  P  
Sbjct: 149 ------------------------NNQLTMLPELPT---SLEVLSV---RNNQLTFLPEL 178

Query: 406 MTSLTNLKSLDLSSCENCEQLPP-LGKLQSLENLHIW 441
                +L++LD+S+    E LP    +    E   I+
Sbjct: 179 ---PESLEALDVSTNLL-ESLPAVPVRNHHSEETEIF 211

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 46.5 bits (111), Expect = 1e-05
 Identities = 43/265 (16%), Positives = 80/265 (30%), Gaps = 48/265 (18%)

Query: 196 ILEELFRELTSLRALDFGGSY----------HSTRLLTPEVPRNIEKLVLPETLCELYNL 245
           + E       +L+ L F  +           +   L +  +  N    +          L
Sbjct: 96  MAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKL 155

Query: 246 EKLDISDCFNLKELPEG-IGKLINVKHL-LNRGTNSLRYMPVGIGRLTGLRTL----GEF 299
           + LD  +   +  L +  +  L    +L LN   N +  +  G       ++L     + 
Sbjct: 156 KVLDFQNN-AIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQN 214

Query: 300 HVSAGGGVDGRKACRLESLKNLEHLQVCGISRLGDVSDVGEAKRLELDKKKYLSSLTLWF 359
            +    G+       L      E +    IS              E   +  + S+ L  
Sbjct: 215 LLVIFKGLKNSTIQSLWLG-TFEDMDDEDISPA----------VFEGLCEMSVESINL-- 261

Query: 360 DKEEEEEGERRKNEDNQLLLEALRPPLNLKELEIEYYRGN--TVFPSWMTSLTNLKSLDL 417
                     +K+    +          L+EL++        +  PS +  L+ LK L L
Sbjct: 262 ----------QKHYFFNISSNTFHCFSGLQELDLTA---THLSELPSGLVGLSTLKKLVL 308

Query: 418 SSCENCEQLPP--LGKLQSLENLHI 440
           S+ +  E L         SL +L I
Sbjct: 309 SANKF-ENLCQISASNFPSLTHLSI 332

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 45.8 bits (109), Expect = 3e-05
 Identities = 43/288 (14%), Positives = 81/288 (28%), Gaps = 65/288 (22%)

Query: 170 SLPISTLRVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGG---SYHSTRLLTPEV 226
            +          ++L       L           + SL    F        S  +     
Sbjct: 193 GIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLC 252

Query: 227 PRNIEKLVL---------PETLCELYNLEKLDISDCFNLKELPEGIGKLINVKHL-LNRG 276
             ++E + L           T      L++LD++   +L ELP G+  L  +K L L+  
Sbjct: 253 EMSVESINLQKHYFFNISSNTFHCFSGLQELDLTAT-HLSELPSGLVGLSTLKKLVLSA- 310

Query: 277 TNSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGRKACRLESLKNLEHLQV--CGISRLGD 334
            N    +       +   +L    +             LE+L+NL  L +    I     
Sbjct: 311 -NKFENLCQIS--ASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDC 367

Query: 335 VSDVGEAKRLELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKELEIE 394
            +               L +L+                              +L+ L + 
Sbjct: 368 CNLQ-------------LRNLS------------------------------HLQSLNLS 384

Query: 395 YYRGNTVFPSWMTSLTNLKSLDLSSC--ENCEQLPPLGKLQSLENLHI 440
           Y    ++          L+ LDL+    +  +   P   L  L+ L++
Sbjct: 385 YNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNL 432

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 44.6 bits (106), Expect = 5e-05
 Identities = 35/256 (13%), Positives = 79/256 (30%), Gaps = 30/256 (11%)

Query: 196 ILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVLPETLCELYNLEKLDISDCFN 255
           I E+ F+    L  L    +                  +    L     L+ L       
Sbjct: 72  IHEDTFQSQHRLDTLVLTANPLIF--------------MAETALSGPKALKHLFFIQT-G 116

Query: 256 LKELPEG-IGKLINVKHL-LNRGTNSLRYMPVG-IGRLTGLRTLG----EFHVSAGGGVD 308
           +  +    +     ++ L L    N +  + +        L+ L       H  +   + 
Sbjct: 117 ISSIDFIPLHNQKTLESLYLGS--NHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMS 174

Query: 309 GRKACRLESLKNLEHLQVCGISRLGDVSDVGEAKRLELDKKKYLSSLTLWFDKEEE-EEG 367
             +     SL NL    + GI      S V ++      +   +    L     +    G
Sbjct: 175 SLQQATNLSL-NLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLG 233

Query: 368 ERRKNEDNQLLLEALR--PPLNLKELEIEYYRGNTVFPSWMTSLTNLKSLDLSSCENCEQ 425
                +D  +          ++++ + ++ +    +  +     + L+ LDL++  +  +
Sbjct: 234 TFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTAT-HLSE 292

Query: 426 LPP-LGKLQSLENLHI 440
           LP  L  L +L+ L +
Sbjct: 293 LPSGLVGLSTLKKLVL 308

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 46.2 bits (110), Expect = 2e-05
 Identities = 43/249 (17%), Positives = 83/249 (33%), Gaps = 56/249 (22%)

Query: 196 ILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVLPETLCELYNLEKLDISDCFN 255
           +       L +L+ L+   +              I+   LPE    L NLE LD+S    
Sbjct: 115 LENFPIGHLKTLKELNVAHN-------------LIQSFKLPEYFSNLTNLEHLDLSSN-K 160

Query: 256 LKEL-PEGIGKLINVKHL---LNRGTNSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGRK 311
           ++ +    +  L  +  L   L+   N + ++  G  +   L  L   +      V    
Sbjct: 161 IQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMK-- 218

Query: 312 ACRLESLKNLEHLQVCGISRLGDVSDVGEAKRLELDKKKYLSSLTLWFDKEEEEEGERRK 371
                 ++ L  L+V  +  LG+  + G  ++ +    + L +LT+              
Sbjct: 219 ----TCIQGLAGLEVHRLV-LGEFRNEGNLEKFDKSALEGLCNLTI-------------- 259

Query: 372 NEDNQLLLEALRPPLNLKELEIEYYRGNTVFPSWMTSLTNLKSLDLSSCENCEQLPPLGK 431
            E+ +L        L+    +I               LTN+ S  L S    E++     
Sbjct: 260 -EEFRLAY------LDYYLDDI---------IDLFNCLTNVSSFSLVSVTI-ERVKDFSY 302

Query: 432 LQSLENLHI 440
               ++L +
Sbjct: 303 NFGWQHLEL 311

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 43.9 bits (104), Expect = 9e-05
 Identities = 51/279 (18%), Positives = 82/279 (29%), Gaps = 41/279 (14%)

Query: 192 LNAAILEELFRELTSLRALDFGGSYHSTRL--LTPEVPRNIEKL---------------V 234
           + +  L E F  LT+L  LD      S ++  +     R + ++                
Sbjct: 136 IQSFKLPEYFSNLTNLEHLDL----SSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF 191

Query: 235 LPETLCELYNLEKLDISDC-FNLKELPEGIGKLINVKHL---LNRGTNSLRYMPVGIGRL 290
           +     +   L KL + +   +L  +   I  L  ++     L    N           L
Sbjct: 192 IQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSAL 251

Query: 291 TGLRTL--GEFHVSAGGGVDGRKACRLESLKNLEHLQV--CGISRLGDVSDVGEAKRLEL 346
            GL  L   EF ++               L N+    +    I R+ D S     + LEL
Sbjct: 252 EGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLEL 311

Query: 347 DKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKELEIEYYRGN-----TV 401
              K+    TL            ++              ++L  LE      N       
Sbjct: 312 VNCKFGQFPTLKL-------KSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGC 364

Query: 402 FPSWMTSLTNLKSLDLSSCENCEQLPPLGKLQSLENLHI 440
                   T+LK LDLS             L+ LE+L  
Sbjct: 365 CSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDF 403

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 42.3 bits (100), Expect = 3e-04
 Identities = 46/296 (15%), Positives = 85/296 (28%), Gaps = 59/296 (19%)

Query: 196 ILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVLPETLCELYNLEKLDISDCFN 255
           +    F     L+ LD                  I+ +        L +L  L ++    
Sbjct: 43  LGSYSFFSFPELQVLDLSRC-------------EIQTIE-DGAYQSLSHLSTLILTGNPI 88

Query: 256 LKELPEGIGKLINVKHL-LNRGTNSLRYMPVG-IGRLTGLRTLGEFHVSAGGGVDGRKAC 313
                     L +++ L       +L  +    IG L  L+ L   +V+       +   
Sbjct: 89  QSLALGAFSGLSSLQKLVAVE--TNLASLENFPIGHLKTLKEL---NVAHNLIQSFKLPE 143

Query: 314 RLESLKNLEHLQVCG--ISRLGDVSDVGEAKRLELDKKK-YLSSLTLWFDKEEEEEGERR 370
              +L NLEHL +    I  +   +D+    ++ L      LS                 
Sbjct: 144 YFSNLTNLEHLDLSSNKIQSI-YCTDLRVLHQMPLLNLSLDLSL---------------- 186

Query: 371 KNEDNQLLLEALRPPLNLKELEIEYYRGN-TVFPSWMTSLTNLKSLDLSSCENCEQ---- 425
            N  N +   A +  + L +L +     +  V  + +  L  L+   L   E   +    
Sbjct: 187 -NPMNFIQPGAFK-EIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLE 244

Query: 426 LPPLGKLQSLENLHIWRMESVKRVGDEFLGIESDHHGSSSSSSVIIAFPKLKSLSI 481
                 L+ L NL I           E   +    +       +      + S S+
Sbjct: 245 KFDKSALEGLCNLTI-----------EEFRLAYLDYYLDDIIDLFNCLTNVSSFSL 289

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 44.6 bits (106), Expect = 2e-05
 Identities = 22/126 (17%), Positives = 45/126 (35%), Gaps = 21/126 (16%)

Query: 315 LESLKNLEHLQVCGISRLGDVSDVGEAKRLELDKKKYLSSLTLWFDKEEEEEGERRKNED 374
           +E   N++ L +  I    + + +     LE         L +               + 
Sbjct: 62  IEYAHNIKDLTINNI-HATNYNPISGLSNLE--------RLRI------------MGKDV 100

Query: 375 NQLLLEALRPPLNLKELEIEYYRGNTVFPSWMTSLTNLKSLDLSSCENCEQLPPLGKLQS 434
               +  L    +L  L+I +   +    + + +L  + S+DLS       + PL  L  
Sbjct: 101 TSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPE 160

Query: 435 LENLHI 440
           L++L+I
Sbjct: 161 LKSLNI 166

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 45.4 bits (108), Expect = 2e-05
 Identities = 26/130 (20%), Positives = 52/130 (40%), Gaps = 20/130 (15%)

Query: 180 RMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRL--LTPEVPRNIEKLVL-- 235
           +M  + +  + L ++ I    F+ +  L  +        T +  +   +P ++ +L L  
Sbjct: 146 QMIVVELGTNPLKSSGIENGAFQGMKKLSYIRI----ADTNITTIPQGLPPSLTELHLDG 201

Query: 236 -------PETLCELYNLEKLDISDCFNLKELPEGIGKLINVKHL--LNRGTNSLRYMPVG 286
                    +L  L NL KL +S   ++  +  G   L N  HL  L+   N L  +P G
Sbjct: 202 NKITKVDAASLKGLNNLAKLGLSFN-SISAVDNGS--LANTPHLRELHLNNNKLVKVPGG 258

Query: 287 IGRLTGLRTL 296
           +     ++ +
Sbjct: 259 LADHKYIQVV 268

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 46.0 bits (109), Expect = 2e-05
 Identities = 46/253 (18%), Positives = 69/253 (27%), Gaps = 87/253 (34%)

Query: 197 LEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVLPETL-----CELYNLEKLDIS 251
           L  L   L  L           T L  P +P  + KL +              L++L +S
Sbjct: 96  LPVLPPGLLELSIFSN----PLTHL--PALPSGLCKLWIFGNQLTSLPVLPPGLQELSVS 149

Query: 252 DCFNLKELPEGIGKLINVKHLLNR----------------GTNSLRYMPVGIGRLTGLRT 295
           D   L  LP    +L  +    N+                  N L  +P     L  L  
Sbjct: 150 DN-QLASLPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLASLPTLPSELYKLWA 208

Query: 296 LGEFHVSAGGGVDGRKACRL----ESLKNLEHLQVCG--ISRLGDVSDVGEAKRLELDKK 349
                             RL         L+ L V G  ++ L       E K L +   
Sbjct: 209 YN---------------NRLTSLPALPSGLKELIVSGNRLTSLPV--LPSELKELMVS-- 249

Query: 350 KYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPL--NLKELEIEYYRGN--TVFPSW 405
                                    N+  L +L P L   L  L +     N  T  P  
Sbjct: 250 ------------------------GNR--LTSL-PMLPSGLLSLSV---YRNQLTRLPES 279

Query: 406 MTSLTNLKSLDLS 418
           +  L++  +++L 
Sbjct: 280 LIHLSSETTVNLE 292

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 44.9 bits (106), Expect = 5e-05
 Identities = 45/211 (21%), Positives = 65/211 (30%), Gaps = 61/211 (28%)

Query: 235 LPETLCELYNLEKLDISDCFNLKELPEGIGKLINVKHLLNRGTNSLRYMPVGIGRLTGLR 294
           LP+ L    ++  L I D  NL  LP    +L      L    N L  +PV    L  L 
Sbjct: 55  LPDCLPA--HITTLVIPDN-NLTSLPALPPELRT----LEVSGNQLTSLPVLPPGLLELS 107

Query: 295 TLGEFHVSAGGGVDGRKACRLESL-KNLEHLQVCGISRLGDVSDVGEAKRLELDKKKYLS 353
                               L +L   L  L + G ++L  +  +             L 
Sbjct: 108 IFSNPL------------THLPALPSGLCKLWIFG-NQLTSLPVLPPG----------LQ 144

Query: 354 SLTLWFDKEEEEEGERRKNEDNQLLLEALRPPL--NLKELEIEYYRGN--TVFPSWMTSL 409
            L++                DNQL   +L P L   L +L       N  T  P      
Sbjct: 145 ELSV---------------SDNQL--ASL-PALPSELCKLWA---YNNQLTSLPM---LP 180

Query: 410 TNLKSLDLSSCENCEQLPP-LGKLQSLENLH 439
           + L+ L +S       LP    +L  L   +
Sbjct: 181 SGLQELSVSDN-QLASLPTLPSELYKLWAYN 210

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 45.5 bits (107), Expect = 3e-05
 Identities = 46/208 (22%), Positives = 84/208 (40%), Gaps = 42/208 (20%)

Query: 237 ETLCELYNLEKLDISDCFNLKELPEGIGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTL 296
            T  EL +++++  ++  ++K + +GI  L NV   L    N L  +   +  L  L  L
Sbjct: 37  VTQNELNSIDQIIANNS-DIKSV-QGIQYLPNVTK-LFLNGNKLTDIK-PLTNLKNLGWL 92

Query: 297 GEFHVSAGGGVDGRKACRLESLKNLEHLQV--CGISRLGDVSDVGEAKRLELDKKKYLSS 354
                     +D  K   L SLK+L+ L+      + + D++         L     L S
Sbjct: 93  ---------FLDENKIKDLSSLKDLKKLKSLSLEHNGISDING--------LVHLPQLES 135

Query: 355 LTLWFDKEEEEEGERRKNEDNQLL-LEALRPPLNLKELEIEYYRGNTVFPSWMTSLTNLK 413
           L L                +N++  +  L     L  L +E  + + + P  +  LT L+
Sbjct: 136 LYL---------------GNNKITDITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQ 178

Query: 414 SLDLSSCENCEQLPPLGKLQSLENLHIW 441
           +L LS   +   L  L  L++L+ L ++
Sbjct: 179 NLYLSKN-HISDLRALAGLKNLDVLELF 205

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 45.1 bits (106), Expect = 4e-05
 Identities = 24/227 (10%), Positives = 54/227 (23%), Gaps = 14/227 (6%)

Query: 217 HSTRLLTPEVPRNIEKLVLPETLCELYNLEKLDISDCFNLKELPEGIGKLINVKHLLNRG 276
               L    +   + +           + ++  +      +           +       
Sbjct: 300 WLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLL-KDRPECWCRDSATDEQLFRC-ELS 357

Query: 277 TNSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGRKACRLESLKNLEHLQVCGISRLGDVS 336
                 +   +     L+ L   +              +  ++ L+ L       L   S
Sbjct: 358 VEKSTVLQSELESCKELQELEPEN-------KWCLLTIILLMRALDPLL-YEKETLQYFS 409

Query: 337 DVGEAKRLELDKKKYLSSLTLWFDKEEEEEGERRKNED-NQLLLEALRPPLNLKELEIEY 395
            +     +       L S  L  +   + E    +        L  L     L  +    
Sbjct: 410 TLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLD 469

Query: 396 YRGN--TVFPSWMTSLTNLKSLDLSSCENCEQLPPLGKLQSLENLHI 440
              N     P  + +L  L+ L  S     E +  +  L  L+ L +
Sbjct: 470 LSHNRLRALPPALAALRCLEVLQASDNA-LENVDGVANLPRLQELLL 515

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 44.6 bits (106), Expect = 5e-05
 Identities = 46/277 (16%), Positives = 84/277 (30%), Gaps = 36/277 (12%)

Query: 179 KRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSY----------HSTRLLTPEVPR 228
             +  L++  + + +       F  LTSL  L    +               L    V  
Sbjct: 80  HHLSNLILTGNPIQS--FSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAH 137

Query: 229 N-IEKLVLPETLCELYNLEKLDISDCFNLKELPEGI----GKLINVKHLLNRGTNSLRYM 283
           N I    LP     L NL  +D+S    ++ +         +   V   L+   N + ++
Sbjct: 138 NFIHSCKLPAYFSNLTNLVHVDLSYN-YIQTITVNDLQFLRENPQVNLSLDMSLNPIDFI 196

Query: 284 PVGIGRLTGLRTLGEFHVSAGGGVDGRKACRLESLKNLEHLQVCGISRLGDVSDVGEAKR 343
                +   L  L          +          L+NL  L V  +  LG+  D    + 
Sbjct: 197 QDQAFQGIKLHELTLRGNFNSSNIMK------TCLQNLAGLHVHRLI-LGEFKDERNLEI 249

Query: 344 LELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKELEIEYYRGNTVFP 403
            E    + L  +T+       +E       D    +       N+  + +       +  
Sbjct: 250 FEPSIMEGLCDVTI-------DEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLED 302

Query: 404 SWMTSLTNLKSLDLSSCENCEQLPPLGKLQSLENLHI 440
                    +SL +  C   +Q P L  L  L++L +
Sbjct: 303 V--PKHFKWQSLSIIRC-QLKQFPTLD-LPFLKSLTL 335

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 41.9 bits (99), Expect = 4e-04
 Identities = 44/303 (14%), Positives = 85/303 (28%), Gaps = 49/303 (16%)

Query: 170 SLPISTLRVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGG----SYHSTRLLTPE 225
            +     +  ++  L +   +  ++ I++   + L  L              +  +  P 
Sbjct: 195 FIQDQAFQGIKLHELTLR-GNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPS 253

Query: 226 VPRNIEKL--------------VLPETLCELYNLEKLDISDCFNLKELPEGIGKLINVKH 271
           +   +  +                      L N+  + ++   ++K L +   K    + 
Sbjct: 254 IMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGV-SIKYLEDVP-KHFKWQS 311

Query: 272 LLNRGTNSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGRKACRLESLKNLEHLQVCGISR 331
           L +     L+  P     L  L++L    ++   G    K   L SL  L  L    +S 
Sbjct: 312 L-SIIRCQLKQFP--TLDLPFLKSL---TLTMNKGSISFKKVALPSLSYL-DLSRNALSF 364

Query: 332 LGDVSDVGEAKRLELDKKKYLSSLTLWFDKEEEEEGERRKNE--------DNQLL----L 379
            G  S               L  L L F+            E         + L      
Sbjct: 365 SGCCS-------YSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEF 417

Query: 380 EALRPPLNLKELEIEYYRGNTVFPSWMTSLTNLKSLDLSSCENCEQLPP--LGKLQSLEN 437
            A      L  L+I Y      F      LT+L +L ++     +           +L  
Sbjct: 418 SAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTF 477

Query: 438 LHI 440
           L +
Sbjct: 478 LDL 480

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 41.2 bits (97), Expect = 7e-04
 Identities = 43/267 (16%), Positives = 82/267 (30%), Gaps = 45/267 (16%)

Query: 196 ILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVLPETLCELYNLEKLDISDCFN 255
           I ++ +  L  L  L   G+   +                P +   L +LE L   +   
Sbjct: 71  IEDKAWHGLHHLSNLILTGNPIQS--------------FSPGSFSGLTSLENLVAVET-K 115

Query: 256 LKELPEG-IGKLINVKHLLNRGTNSLRYMPVG--IGRLTGLRTL-------GEFHVSAGG 305
           L  L    IG+LI +K  LN   N +    +      LT L  +           V+   
Sbjct: 116 LASLESFPIGQLITLKK-LNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQ 174

Query: 306 GVDGRKACRLESLKNLEHLQVCGISRLG------------DVSDVGEAKRLELDKKKYLS 353
            +         SL     + +  I  +              +     +  +     + L+
Sbjct: 175 FL-RENPQVNLSL----DMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLA 229

Query: 354 SLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKELEIEYYRGNTVFPSWMTSLTNLK 413
            L +      E + ER        ++E L   + + E  + Y    +        L N+ 
Sbjct: 230 GLHVHRLILGEFKDERNLEIFEPSIMEGL-CDVTIDEFRLTYTNDFSDDIVKFHCLANVS 288

Query: 414 SLDLSSCENCEQLPPLGKLQSLENLHI 440
           ++ L+     + L  + K    ++L I
Sbjct: 289 AMSLAGVSI-KYLEDVPKHFKWQSLSI 314

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 44.7 bits (106), Expect = 6e-05
 Identities = 29/104 (27%), Positives = 47/104 (45%), Gaps = 19/104 (18%)

Query: 196 ILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVLPETLCELYNLEKLDISDCFN 255
               +F  L+SL  L   G+             + ++  LP+   EL NL  LD+S C  
Sbjct: 436 AFNGIFNGLSSLEVLKMAGN-------------SFQENFLPDIFTELRNLTFLDLSQC-Q 481

Query: 256 LKELPEGI-GKLINVKHL-LNRGTNSLRYMPVGI-GRLTGLRTL 296
           L++L       L +++ L +    N L+ +P GI  RLT L+ +
Sbjct: 482 LEQLSPTAFNSLSSLQVLNMAS--NQLKSVPDGIFDRLTSLQKI 523

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 44.5 bits (105), Expect = 6e-05
 Identities = 30/130 (23%), Positives = 53/130 (40%), Gaps = 21/130 (16%)

Query: 170 SLPISTLRVKRMRTL--LINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVP 227
           +     L  K M +L  L    + LN+   +       S+  L+      S  L T  V 
Sbjct: 391 NFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNL----SSNML-TGSVF 445

Query: 228 RNIEKLVLPETLCELYNLEKLDISDCFNLKELPEGIGKLINVKHLLNRGTNSLRYMPVGI 287
           R      LP        ++ LD+ +   +  +P+ +  L  ++  LN  +N L+ +P G+
Sbjct: 446 RC-----LPP------KVKVLDLHNN-RIMSIPKDVTHLQALQE-LNVASNQLKSVPDGV 492

Query: 288 -GRLTGLRTL 296
             RLT L+ +
Sbjct: 493 FDRLTSLQYI 502

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 43.0 bits (102), Expect = 2e-04
 Identities = 41/271 (15%), Positives = 78/271 (28%), Gaps = 62/271 (22%)

Query: 204 LTSLRALDFGGSYHSTRLLTPEVPRNIEKL---------------VLPETLCELYNLEKL 248
            + L +L    +Y     L+  +P ++  L                +P+ L  +  LE L
Sbjct: 417 CSELVSLHLSFNY-----LSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETL 471

Query: 249 DISDCFNLK-ELPEGIGKLINVKHLLNRGTNSLR-YMPVGIGRLTGLRTL--------GE 298
            +    +L  E+P G+    N+   ++   N L   +P  IGRL  L  L        G 
Sbjct: 472 ILDFN-DLTGEIPSGLSNCTNLNW-ISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGN 529

Query: 299 FHVSAGGGVDGRKACRLESLKNLEHLQVCGIS--RL-GDVSDVGEAKRLELDKKKYLSSL 355
                              L +   L    ++     G +       +          + 
Sbjct: 530 IP---------------AELGDCRSLIWLDLNTNLFNGTIPA--AMFKQSGKIAANFIAG 572

Query: 356 TLWFDKEEEEEGERRKNEDNQLLLEALRPP--LNLKELEIEYYRGNT---VFPSWMTSLT 410
             +   + +   +      N L  + +R      L                      +  
Sbjct: 573 KRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNG 632

Query: 411 NLKSLDLSSCEN--CEQLPP-LGKLQSLENL 438
           ++  LD+S   N     +P  +G +  L  L
Sbjct: 633 SMMFLDMSY--NMLSGYIPKEIGSMPYLFIL 661

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 29/138 (21%), Positives = 45/138 (32%), Gaps = 19/138 (13%)

Query: 201 FRELTSLRALDFGGSYHSTRLLTPEVPRNIEKL-----------VLPETLCELYNLEKLD 249
           F +LT L  L    +  S +    +       L            +      L  LE LD
Sbjct: 48  FDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLD 107

Query: 250 ISDCFNLKELPEG--IGKLINVKHL-LNRGTNSLRYMPVGIGRLTGLRTLGEFHVSAGGG 306
                NLK++ E      L N+ +L ++      R    GI    GL +L    ++    
Sbjct: 108 FQHS-NLKQMSEFSVFLSLRNLIYLDISH--THTRVAFNGI--FNGLSSLEVLKMAGNSF 162

Query: 307 VDGRKACRLESLKNLEHL 324
            +         L+NL  L
Sbjct: 163 QENFLPDIFTELRNLTFL 180

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 42.5 bits (100), Expect = 3e-04
 Identities = 30/144 (20%), Positives = 61/144 (42%), Gaps = 23/144 (15%)

Query: 157 KVRHLMLIFSKAASLPISTLRVKRMRTL--LINDHSLLNAAILEELFRELTSLRALDFGG 214
           ++  L+L  ++   L        +M++L  L    + ++    +       SL +L+   
Sbjct: 349 ELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNM-- 406

Query: 215 SYHSTRLLTPEVPRNIEKLVLPETLCELYNLEKLDISDCFNLKELPEGIGKLINVKHL-L 273
              S+ +LT  + R           C    ++ LD+     +K +P+ + KL  ++ L +
Sbjct: 407 ---SSNILTDTIFR-----------CLPPRIKVLDLHSN-KIKSIPKQVVKLEALQELNV 451

Query: 274 NRGTNSLRYMPVGI-GRLTGLRTL 296
               N L+ +P GI  RLT L+ +
Sbjct: 452 AS--NQLKSVPDGIFDRLTSLQKI 473

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 41.7 bits (98), Expect = 3e-04
 Identities = 38/249 (15%), Positives = 72/249 (28%), Gaps = 57/249 (22%)

Query: 226 VPRNIEKLVL---------PETLCELYNLEKLDISDCFNLKELPEGI-GKLINVKHLLNR 275
           +PRN  +L                   +LEK++IS    L+ +   +   L  +  +   
Sbjct: 28  LPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87

Query: 276 GTNSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGRKACRLESL--------KNLEHLQVC 327
             N+L Y+         L  L    +S            ++ L             L + 
Sbjct: 88  KANNLLYINPEA--FQNLPNLQYLLIS---------NTGIKHLPDVHKIHSLQKVLLDIQ 136

Query: 328 GISRLGDVSD------VGEAKRLELDKKK----------YLSSLTLWFDKEEEEEGERRK 371
               +  +          E+  L L+K                  L              
Sbjct: 137 DNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNL---------SDN 187

Query: 372 NEDNQLLLEALRPPLNLKELEIEYYRGNTVFPSWMTSLTNLKSLDLSSCENCEQLPPLGK 431
           N   +L  +          L+I   R +++    + +L  L++       N ++LP L K
Sbjct: 188 NNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTY---NLKKLPTLEK 244

Query: 432 LQSLENLHI 440
           L +L    +
Sbjct: 245 LVALMEASL 253

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 41.6 bits (98), Expect = 4e-04
 Identities = 47/258 (18%), Positives = 83/258 (32%), Gaps = 62/258 (24%)

Query: 196 ILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVLPETLCELYNLEKLDISDCFN 255
           + ++ F     L  L+   +              +  +  P     L+NL  L +     
Sbjct: 47  LNQDEFASFPHLEELELNEN-------------IVSAVE-PGAFNNLFNLRTLGLRSN-R 91

Query: 256 LKELPEGI-GKLINVKHL-LNRGTNSLRYMPVGI-GRLTGLRTL-------GEFHVSAGG 305
           LK +P G+   L N+  L ++   N +  +   +   L  L++L             A  
Sbjct: 92  LKLIPLGVFTGLSNLTKLDISE--NKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFS 149

Query: 306 GVDGRKACRLESLKNLEHLQVCGISRLGDVSDVGEAKRLELDKKKYLSSL-TLWFDKEEE 364
           G        L SL+ L  L+ C ++ +   +               L  L  L       
Sbjct: 150 G--------LNSLEQL-TLEKCNLTSIPTEALSH------------LHGLIVLRL----- 183

Query: 365 EEGERRKNEDNQLLLEALRPPLNLKELEIEYYRGNTVFPSWMTSLTNLKSLDLSSCENCE 424
                R    N +   + +    LK LEI ++              NL SL ++ C N  
Sbjct: 184 -----RHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHC-NLT 237

Query: 425 QLPP--LGKLQSLENLHI 440
            +P   +  L  L  L++
Sbjct: 238 AVPYLAVRHLVYLRFLNL 255

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 40.9 bits (96), Expect = 8e-04
 Identities = 60/308 (19%), Positives = 97/308 (31%), Gaps = 77/308 (25%)

Query: 153 ALDEKVRHLMLIFSKAASLPISTLR-VKRMRTLLINDHSLLNAAILEELFRELTSLRALD 211
            +  + R L L  ++  +L          +  L +N++ +  +A+    F  L +LR L 
Sbjct: 29  GIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIV--SAVEPGAFNNLFNLRTLG 86

Query: 212 FGGSYHSTRLLTPEVPRNIEKLVLPETLCELYNLEKLDISDCFNLKELPEGI-GKLINVK 270
                            N  KL+       L NL KLDIS+   +  L + +   L N+K
Sbjct: 87  LR--------------SNRLKLIPLGVFTGLSNLTKLDISEN-KIVILLDYMFQDLYNLK 131

Query: 271 HL-LNRGTNSLRYMPVGI-GRLTGLRTL------------GEFHVSAGGGVDGRKACRLE 316
            L +    N L Y+       L  L  L                              L 
Sbjct: 132 SLEVGD--NDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEAL-------------SHLH 176

Query: 317 SLKNLEHLQVCGISRLGDV--SDVGEAKRLELDKKKYLSSLTLWFDKEEEEEGERRKNED 374
            L  L  L+   I+ + D     +   K LE+    YL ++T                  
Sbjct: 177 GLIVL-RLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMT------------------ 217

Query: 375 NQLLLEALRPPLNLKELEIEYYRGNTVFPSWMTSLTNLKSLDLSSCENCEQLPP--LGKL 432
                      LNL  L I +     V    +  L  L+ L+LS       +    L +L
Sbjct: 218 -----PNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNP-ISTIEGSMLHEL 271

Query: 433 QSLENLHI 440
             L+ + +
Sbjct: 272 LRLQEIQL 279

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 41.3 bits (97), Expect = 6e-04
 Identities = 46/251 (18%), Positives = 87/251 (34%), Gaps = 49/251 (19%)

Query: 196 ILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVLPETLCELYNLEKLDISDCFN 255
           I  + FR L  L  L  G              RN  + +       L +L  L++ D   
Sbjct: 90  IQADTFRHLHHLEVLQLG--------------RNSIRQIEVGAFNGLASLNTLELFDN-W 134

Query: 256 LKELPEGI-GKLINVKHL-LNRGTNSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGRKAC 313
           L  +P G    L  ++ L L    N +  +P        + +L    +     ++     
Sbjct: 135 LTVIPSGAFEYLSKLRELWLRN--NPIESIPSYA--FNRVPSLMRLDLGELKKLEYISEG 190

Query: 314 RLESLKNLE--HLQVCGISRLGDVSDVGEAKRLELDKKKYLSSLTLWFDKEEEEEGERRK 371
             E L NL+  +L +C I  + +++ +   + LE+                         
Sbjct: 191 AFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSG----------------------- 227

Query: 372 NEDNQLLLEALRPPLNLKELEIEYYRGNTVFPSWMTSLTNLKSLDLSSCENCEQLPP--L 429
           N   ++   +     +LK+L +   + + +  +    L +L  L+L+   N   LP    
Sbjct: 228 NHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHN-NLSSLPHDLF 286

Query: 430 GKLQSLENLHI 440
             L+ L  LH+
Sbjct: 287 TPLRYLVELHL 297

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 41.1 bits (96), Expect = 6e-04
 Identities = 40/297 (13%), Positives = 82/297 (27%), Gaps = 33/297 (11%)

Query: 165 FSKAASLPISTLRVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSY---HSTRL 221
           F    SL +       M  L+  +        + E+   L  L+++ F            
Sbjct: 72  FPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDR 131

Query: 222 LTPEVPRNIEKLVL-------PETLCEL----YNLEKLDISDCFNLKELPEGIGKLINVK 270
           L      ++E L L        + L  +      ++ L + +    ++  + + +L    
Sbjct: 132 LAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHN 191

Query: 271 HLLNRGTNSLRYMP----VGIGRL-TGLRTLGEFHVSAGGGVDGRKACRLESLKNLEHLQ 325
             L      +          +  +    R+L    V     ++     +     NLE   
Sbjct: 192 TSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKA--AANLEEF- 248

Query: 326 VCGISRLGDVSDVGEAKRLELDKKKYLSSLTLWFDKEEEEEGERRKN----------EDN 375
            CG S   D+    +   L   +K     L+     E                     + 
Sbjct: 249 -CGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLET 307

Query: 376 QLLLEALRPPLNLKELEIEYYRGNTVFPSWMTSLTNLKSLDLSSCENCEQLPPLGKL 432
           +     ++   NL+ LE     G+            LK L +    + + +     L
Sbjct: 308 EDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGL 364

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 40.7 bits (96), Expect = 7e-04
 Identities = 32/251 (12%), Positives = 78/251 (31%), Gaps = 61/251 (24%)

Query: 197 LEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVLPETLCELYNLEKLDISDCFNL 256
           + E+ +     +                 V  +  K  L       +N+++LD+S    L
Sbjct: 2   IHEIKQNGNRYKIEK--------------VTDSSLKQALASLRQSAWNVKELDLSGN-PL 46

Query: 257 KELPEG-IGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGRKACRL 315
            ++    +     ++  LN  +N L      +  L+ LRTL    ++            +
Sbjct: 47  SQISAADLAPFTKLEL-LNLSSNVLYETL-DLESLSTLRTL---DLN---------NNYV 92

Query: 316 ESLKNLEHLQVCGIS--RLGDVSDVGEAKRLELDKKKYLSSLTLWFDKEEEEEGERRKNE 373
           + L     ++    +   +          R+   + +   ++ L                
Sbjct: 93  QELLVGPSIETLHAANNNI---------SRVSCSRGQGKKNIYL---------------A 128

Query: 374 DNQLLL---EALRPPLNLKELEIEYYRGNTV-FPSWMTSLTNLKSLDLSSCENCEQLPPL 429
           +N++ +           ++ L+++    +TV F     S   L+ L+L        +   
Sbjct: 129 NNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN-FIYDVKGQ 187

Query: 430 GKLQSLENLHI 440
                L+ L +
Sbjct: 188 VVFAKLKTLDL 198

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	488
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.91
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.91
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.91
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.9
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.9
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.9
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.9
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.89
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.89
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.89
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.88
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.87
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.87
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.87
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.87
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.87
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.87
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.87
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.86
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.86
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.86
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.86
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.86
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.86
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.85
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.85
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.85
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.85
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.84
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.84
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.84
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.84
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.84
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.84
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.84
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.83
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.83
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.83
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.83
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.82
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.82
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.82
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.82
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.82
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.81
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.81
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.8
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.8
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.8
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.8
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.8
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.79
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.79
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.79
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.78
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.77
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.76
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.76
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.76
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.76
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.75
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.75
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.74
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.74
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.73
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.73
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.72
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.72
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.72
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.72
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.71
3qfl_A	115	MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-	99.71
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.71
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.7
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.7
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.7
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.7
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.7
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.7
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.69
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.69
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.68
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.68
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.66
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.65
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.65
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.64
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.63
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.62
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.62
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.62
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.61
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.61
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.58
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.57
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.57
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.56
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.55
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.54
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.54
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.53
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.52
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.52
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.51
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.5
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.5
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.47
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.46
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.44
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.43
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.42
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.42
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.41
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.38
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.37
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.36
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.35
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.35
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.33
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.32
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.28
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.25
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.24
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.23
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.23
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.18
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.15
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.12
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.12
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.06
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.06
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.06
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.05
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.01
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.95
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	98.92
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	98.8
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.79
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.77
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.72
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	98.69
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	98.68
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	98.68
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.5
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.46
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.37
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.36
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.2
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.2
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.12
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.01
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.91
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.74
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.55
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.36
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	97.24
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	96.7
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	96.37
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	94.2
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	94.12
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	93.59
2a5y_B	549	CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis	93.49
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	93.12
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	92.63
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	89.16
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	86.84
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	86.62
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	83.5

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.91  E-value=9.5e-25  Score=232.62  Aligned_cols=273  Identities=16%  Similarity=0.183  Sum_probs=159.2

Q ss_pred             ccceeeEEEEecC-CcCccccccccCcceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccCc-
Q 038150          156 EKVRHLMLIFSKA-ASLPISTLRVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKL-  233 (488)
Q Consensus       156 ~~vr~l~l~~~~~-~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l-  233 (488)
                      ..++.+.+..+.. +.+|..+.++++|++|++.+| .+.+ .+|..+..+++|++|++++|.+     .+.+|..+..+ 
T Consensus       394 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N-~l~~-~~p~~l~~l~~L~~L~L~~n~l-----~~~~p~~~~~l~  466 (768)
T 3rgz_A          394 NTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFN-YLSG-TIPSSLGSLSKLRDLKLWLNML-----EGEIPQELMYVK  466 (768)
T ss_dssp             CCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSS-EEES-CCCGGGGGCTTCCEEECCSSCC-----CSCCCGGGGGCT
T ss_pred             CCccEEECCCCccccccCHHHhcCCCCCEEECcCC-cccC-cccHHHhcCCCCCEEECCCCcc-----cCcCCHHHcCCC
Confidence            3456666665555 355666667777777777776 4443 4555567777777777777764     44344333222 


Q ss_pred             --------------cCchhhhhhccCcEeecCCCCCcccCchhhccccccceeeccCCCCCCCCCCCCCCcccccccCce
Q 038150          234 --------------VLPETLCELYNLEKLDISDCFNLKELPEGIGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEF  299 (488)
Q Consensus       234 --------------~lp~~i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~  299 (488)
                                    .+|..++++++|++|++++|.....+|..++.+++|++|++++|.+.+.+|..++++++|++|++.
T Consensus       467 ~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls  546 (768)
T 3rgz_A          467 TLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLN  546 (768)
T ss_dssp             TCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECC
T ss_pred             CceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECC
Confidence                          344445555555555555544333455555555555555555555444445555555555555555


Q ss_pred             eecCCCCCCCCcccCcccccCCCcccccc------ccc---------------ccCC------------------CChhh
Q 038150          300 HVSAGGGVDGRKACRLESLKNLEHLQVCG------ISR---------------LGDV------------------SDVGE  340 (488)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~l~~L~~L~~L~------~~~---------------~~~~------------------~~~~~  340 (488)
                      +|.+.+..    +..+.....+..+....      +..               +.+.                  .....
T Consensus       547 ~N~l~g~i----p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g  622 (768)
T 3rgz_A          547 TNLFNGTI----PAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGG  622 (768)
T ss_dssp             SSEEESBC----CGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEE
T ss_pred             CCccCCcC----ChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecc
Confidence            44443321    11111110000000000      000               0000                  00000


Q ss_pred             hhHhhcccCCCCCceeecccCchhhhhhhccccchHHHhhhCCCCCCCCEEEeccccCCCCCchHHHhccCCcEEeecCC
Q 038150          341 AKRLELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKELEIEYYRGNTVFPSWMTSLTNLKSLDLSSC  420 (488)
Q Consensus       341 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~  420 (488)
                      ..+..+..+++|+.|++++|.+.            ..+|..++.+++|+.|+|++|.+.+.+|..++.+++|+.|++++|
T Consensus       623 ~~~~~~~~l~~L~~LdLs~N~l~------------g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N  690 (768)
T 3rgz_A          623 HTSPTFDNNGSMMFLDMSYNMLS------------GYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSN  690 (768)
T ss_dssp             ECCCSCSSSBCCCEEECCSSCCB------------SCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSS
T ss_pred             cCchhhhccccccEEECcCCccc------------ccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCC
Confidence            11234556778888899888875            456778888899999999999888778999999999999999999


Q ss_pred             CCCCCCCC-CCCCCCcCeeeecccccceeeCc
Q 038150          421 ENCEQLPP-LGKLQSLENLHIWRMESVKRVGD  451 (488)
Q Consensus       421 ~~~~~~~~-l~~l~~L~~L~l~~~~~l~~~~~  451 (488)
                      ...+.+|. ++.+++|++|++++|.-...+|.
T Consensus       691 ~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~  722 (768)
T 3rgz_A          691 KLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE  722 (768)
T ss_dssp             CCEECCCGGGGGCCCCSEEECCSSEEEEECCS
T ss_pred             cccCcCChHHhCCCCCCEEECcCCcccccCCC
Confidence            88888887 88889999999998885555654

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.91  E-value=2.4e-24  Score=216.14  Aligned_cols=288  Identities=17%  Similarity=0.132  Sum_probs=175.9

Q ss_pred             ccccceeeEEEEecCCcC-ccccccccCcceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccC
Q 038150          154 LDEKVRHLMLIFSKAASL-PISTLRVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEK  232 (488)
Q Consensus       154 ~~~~vr~l~l~~~~~~~~-~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~  232 (488)
                      ....+++++++.+....+ |..+.++++|++|++.+|. +.....+..|.++++|++|+|++|.+     .+        
T Consensus        28 l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~-~~~~i~~~~~~~l~~L~~L~Ls~n~l-----~~--------   93 (455)
T 3v47_A           28 LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQT-PGLVIRNNTFRGLSSLIILKLDYNQF-----LQ--------   93 (455)
T ss_dssp             CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCS-TTCEECTTTTTTCTTCCEEECTTCTT-----CE--------
T ss_pred             CCCccCEEEecCCccCcCChhHhccCccccEEECcCCc-ccceECcccccccccCCEEeCCCCcc-----Cc--------
Confidence            447789999998888666 6678899999999999973 33214456688999999999999984     32        


Q ss_pred             ccCchhhhhhccCcEeecCCCCCcccCchh--hccccccceeeccCCCCCCCCCCC-CCCcccccccCceeecCCCCCCC
Q 038150          233 LVLPETLCELYNLEKLDISDCFNLKELPEG--IGKLINVKHLLNRGTNSLRYMPVG-IGRLTGLRTLGEFHVSAGGGVDG  309 (488)
Q Consensus       233 l~lp~~i~~L~~L~~L~l~~~~~~~~lp~~--l~~L~~L~~L~l~~~~~~~~lp~~-i~~L~~L~~L~l~~~~~~~~~~~  309 (488)
                       ..|..++++++|++|++++|......|..  ++.+++|++|++++|.+....|.. ++++++|++|++.+|.+.+..+.
T Consensus        94 -~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  172 (455)
T 3v47_A           94 -LETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEE  172 (455)
T ss_dssp             -ECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTT
T ss_pred             -cChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChh
Confidence             33556777777888888776644434444  677777888888777755544554 67777777777777765542211


Q ss_pred             CcccC---------------------------cccccCCCcccccccccccCCCChh-----------------------
Q 038150          310 RKACR---------------------------LESLKNLEHLQVCGISRLGDVSDVG-----------------------  339 (488)
Q Consensus       310 ~~~~~---------------------------~~~l~~L~~L~~L~~~~~~~~~~~~-----------------------  339 (488)
                      .....                           ...+..+++|+.|++....-.....                       
T Consensus       173 ~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~  252 (455)
T 3v47_A          173 DLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNM  252 (455)
T ss_dssp             TSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTT
T ss_pred             hhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeecccccc
Confidence            10000                           0001122344444443321100000                       


Q ss_pred             ------------------------------------hhhHhhcccCCCCCceeecccCchhhhhhhccccchHHHhhhCC
Q 038150          340 ------------------------------------EAKRLELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALR  383 (488)
Q Consensus       340 ------------------------------------~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~  383 (488)
                                                          ...+..+..+++|+.|++++|.+.            ...+..+.
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~------------~~~~~~~~  320 (455)
T 3v47_A          253 GSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEIN------------KIDDNAFW  320 (455)
T ss_dssp             SCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCC------------EECTTTTT
T ss_pred             ccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCccc------------ccChhHhc
Confidence                                                001223444555555555555543            22244566


Q ss_pred             CCCCCCEEEeccccCCCCCchHHHhccCCcEEeecCCCCCCCCCC-CCCCCCcCeeeecccccceeeCccccCCCCCCCC
Q 038150          384 PPLNLKELEIEYYRGNTVFPSWMTSLTNLKSLDLSSCENCEQLPP-LGKLQSLENLHIWRMESVKRVGDEFLGIESDHHG  462 (488)
Q Consensus       384 ~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~-l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~  462 (488)
                      .+++|+.|++++|.+....|..++.+++|++|++++|......|. ++.+++|++|++++|. ++.++.+.         
T Consensus       321 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~---------  390 (455)
T 3v47_A          321 GLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQ-LKSVPDGI---------  390 (455)
T ss_dssp             TCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CSCCCTTT---------
T ss_pred             CcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCc-cccCCHhH---------
Confidence            666777777777766654456666677777777777765554444 6667777777776665 55554432         


Q ss_pred             CCCCCcccccCcccccccccccc
Q 038150          463 SSSSSSVIIAFPKLKSLSIEVLR  485 (488)
Q Consensus       463 ~~~~~~~~~~~p~L~~L~l~~~p  485 (488)
                             .+.+++|++|.+.++|
T Consensus       391 -------~~~l~~L~~L~l~~N~  406 (455)
T 3v47_A          391 -------FDRLTSLQKIWLHTNP  406 (455)
T ss_dssp             -------TTTCTTCCEEECCSSC
T ss_pred             -------hccCCcccEEEccCCC
Confidence                   3468899999998654

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.91  E-value=3.6e-25  Score=210.39  Aligned_cols=253  Identities=20%  Similarity=0.186  Sum_probs=208.8

Q ss_pred             ccceeeEEEEecCC---cCccccccccCcceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccC
Q 038150          156 EKVRHLMLIFSKAA---SLPISTLRVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEK  232 (488)
Q Consensus       156 ~~vr~l~l~~~~~~---~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~  232 (488)
                      .+|+++++..+...   .+|..+.++++|++|++.+++.+.+ .+|..|.++++|++|++++|.+     .+        
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~-~~p~~l~~l~~L~~L~Ls~n~l-----~~--------  115 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVG-PIPPAIAKLTQLHYLYITHTNV-----SG--------  115 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEES-CCCGGGGGCTTCSEEEEEEECC-----EE--------
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccc-cCChhHhcCCCCCEEECcCCee-----CC--------
Confidence            57899999998885   6899999999999999996225554 5677799999999999999995     44        


Q ss_pred             ccCchhhhhhccCcEeecCCCCCcccCchhhccccccceeeccCCCCCCCCCCCCCCcc-cccccCceeecCCCCCCCCc
Q 038150          233 LVLPETLCELYNLEKLDISDCFNLKELPEGIGKLINVKHLLNRGTNSLRYMPVGIGRLT-GLRTLGEFHVSAGGGVDGRK  311 (488)
Q Consensus       233 l~lp~~i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~L~l~~~~~~~~lp~~i~~L~-~L~~L~l~~~~~~~~~~~~~  311 (488)
                       .+|..++++++|++|++++|.....+|..++.+++|++|++++|.+...+|..+++++ +|++|++.+|.+.+.     
T Consensus       116 -~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~-----  189 (313)
T 1ogq_A          116 -AIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGK-----  189 (313)
T ss_dssp             -ECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEE-----
T ss_pred             -cCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeecc-----
Confidence             5778899999999999999886668999999999999999999997768899999998 999999999876532     


Q ss_pred             ccCcccccCCCcccccccccccCCCChhhhhHhhcccCCCCCceeecccCchhhhhhhccccchHHHhhhCCCCCCCCEE
Q 038150          312 ACRLESLKNLEHLQVCGISRLGDVSDVGEAKRLELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKEL  391 (488)
Q Consensus       312 ~~~~~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L  391 (488)
                        ....+..++ |+.|.+....-.    ...+..+..+++|+.|++++|.+...             +..+..+++|+.|
T Consensus       190 --~~~~~~~l~-L~~L~Ls~N~l~----~~~~~~~~~l~~L~~L~L~~N~l~~~-------------~~~~~~l~~L~~L  249 (313)
T 1ogq_A          190 --IPPTFANLN-LAFVDLSRNMLE----GDASVLFGSDKNTQKIHLAKNSLAFD-------------LGKVGLSKNLNGL  249 (313)
T ss_dssp             --CCGGGGGCC-CSEEECCSSEEE----ECCGGGCCTTSCCSEEECCSSEECCB-------------GGGCCCCTTCCEE
T ss_pred             --CChHHhCCc-ccEEECcCCccc----CcCCHHHhcCCCCCEEECCCCceeee-------------cCcccccCCCCEE
Confidence              223344444 777777543211    11346778899999999999987532             2347788999999


Q ss_pred             EeccccCCCCCchHHHhccCCcEEeecCCCCCCCCCCCCCCCCcCeeeeccccccee
Q 038150          392 EIEYYRGNTVFPSWMTSLTNLKSLDLSSCENCEQLPPLGKLQSLENLHIWRMESVKR  448 (488)
Q Consensus       392 ~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~  448 (488)
                      ++++|.+...+|.++..+++|++|++++|...+.+|..+.+++|+.|++.+|+.+-.
T Consensus       250 ~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc~  306 (313)
T 1ogq_A          250 DLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCG  306 (313)
T ss_dssp             ECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEES
T ss_pred             ECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCccC
Confidence            999999986699999999999999999999888899888999999999999984443

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.90  E-value=2e-24  Score=206.53  Aligned_cols=221  Identities=22%  Similarity=0.281  Sum_probs=160.9

Q ss_pred             ccceeeEEEEecCCcCccccccccCcceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccCccC
Q 038150          156 EKVRHLMLIFSKAASLPISTLRVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVL  235 (488)
Q Consensus       156 ~~vr~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~l  235 (488)
                      ..++.+++..+....+|..+.++++|++|++.+| .+.  .+|..+.++++|++|+|++|.      +.         .+
T Consensus        81 ~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n-~l~--~lp~~~~~l~~L~~L~Ls~n~------l~---------~l  142 (328)
T 4fcg_A           81 PGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAA-GLM--ELPDTMQQFAGLETLTLARNP------LR---------AL  142 (328)
T ss_dssp             TTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESS-CCC--CCCSCGGGGTTCSEEEEESCC------CC---------CC
T ss_pred             cceeEEEccCCCchhcChhhhhCCCCCEEECCCC-Ccc--chhHHHhccCCCCEEECCCCc------cc---------cC
Confidence            4567777777777777777777777777777776 444  345556777777777777776      33         45


Q ss_pred             chhhhhhccCcEeecCCCCCcccCchhhcc---------ccccceeeccCCCCCCCCCCCCCCcccccccCceeecCCCC
Q 038150          236 PETLCELYNLEKLDISDCFNLKELPEGIGK---------LINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFHVSAGGG  306 (488)
Q Consensus       236 p~~i~~L~~L~~L~l~~~~~~~~lp~~l~~---------L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~  306 (488)
                      |..++++++|++|++++|...+.+|..++.         +++|++|++++|.+ ..+|..++++++|++|++.+|.+.+ 
T Consensus       143 p~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l-~~lp~~l~~l~~L~~L~L~~N~l~~-  220 (328)
T 4fcg_A          143 PASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGI-RSLPASIANLQNLKSLKIRNSPLSA-  220 (328)
T ss_dssp             CGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECC-CCCCGGGGGCTTCCEEEEESSCCCC-
T ss_pred             cHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCc-CcchHhhcCCCCCCEEEccCCCCCc-
Confidence            666777777777777777666677766554         66777777776663 3666666667777777666654332 


Q ss_pred             CCCCcccCcccccCCCcccccccccccCCCChhhhhHhhcccCCCCCceeecccCchhhhhhhccccchHHHhhhCCCCC
Q 038150          307 VDGRKACRLESLKNLEHLQVCGISRLGDVSDVGEAKRLELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPL  386 (488)
Q Consensus       307 ~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  386 (488)
                                                  ++       ..+..+++|+.|++++|.+.            ..+|..+..++
T Consensus       221 ----------------------------l~-------~~l~~l~~L~~L~Ls~n~~~------------~~~p~~~~~l~  253 (328)
T 4fcg_A          221 ----------------------------LG-------PAIHHLPKLEELDLRGCTAL------------RNYPPIFGGRA  253 (328)
T ss_dssp             ----------------------------CC-------GGGGGCTTCCEEECTTCTTC------------CBCCCCTTCCC
T ss_pred             ----------------------------Cc-------hhhccCCCCCEEECcCCcch------------hhhHHHhcCCC
Confidence                                        11       24566778888888887764            44567788899


Q ss_pred             CCCEEEeccccCCCCCchHHHhccCCcEEeecCCCCCCCCCC-CCCCCCcCeeeeccc
Q 038150          387 NLKELEIEYYRGNTVFPSWMTSLTNLKSLDLSSCENCEQLPP-LGKLQSLENLHIWRM  443 (488)
Q Consensus       387 ~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~-l~~l~~L~~L~l~~~  443 (488)
                      +|+.|++++|...+.+|.+++.+++|++|+|++|...+.+|. ++.+++|+.+.+..+
T Consensus       254 ~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~  311 (328)
T 4fcg_A          254 PLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH  311 (328)
T ss_dssp             CCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGG
T ss_pred             CCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHH
Confidence            999999999888777898899999999999999999998887 889999999888654

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.90  E-value=3.3e-24  Score=228.48  Aligned_cols=271  Identities=17%  Similarity=0.152  Sum_probs=190.8

Q ss_pred             ccceeeEEEEecCC-cCcccccccc-Ccceecccccc-------------------------hhhhhhHHHHHhcCCccc
Q 038150          156 EKVRHLMLIFSKAA-SLPISTLRVK-RMRTLLINDHS-------------------------LLNAAILEELFRELTSLR  208 (488)
Q Consensus       156 ~~vr~l~l~~~~~~-~~~~~~~~~~-~Lr~L~l~~~~-------------------------~~~~~~~~~~~~~l~~Lr  208 (488)
                      ..++.+.+..+... .+|..+..++ +|++|++++|.                         .+.+ .+|..+.++++|+
T Consensus       343 ~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~p~~l~~l~~L~  421 (768)
T 3rgz_A          343 RGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTG-KIPPTLSNCSELV  421 (768)
T ss_dssp             TTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEE-ECCGGGGGCTTCC
T ss_pred             CCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCcccc-ccCHHHhcCCCCC
Confidence            45556666655542 4555554444 55555555541                         2222 3344455555555


Q ss_pred             eeecCCCcccccccCCcccccccCccCchhhhhhccCcEeecCCCCCcccCchhhccccccceeeccCCCCCCCCCCCCC
Q 038150          209 ALDFGGSYHSTRLLTPEVPRNIEKLVLPETLCELYNLEKLDISDCFNLKELPEGIGKLINVKHLLNRGTNSLRYMPVGIG  288 (488)
Q Consensus       209 ~L~Ls~~~~~~~~~~~~lp~~i~~l~lp~~i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~L~l~~~~~~~~lp~~i~  288 (488)
                      +|++++|.+     .+         .+|..++.+++|++|++++|.....+|..++.+++|++|++++|.+...+|..++
T Consensus       422 ~L~Ls~N~l-----~~---------~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~  487 (768)
T 3rgz_A          422 SLHLSFNYL-----SG---------TIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLS  487 (768)
T ss_dssp             EEECCSSEE-----ES---------CCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGG
T ss_pred             EEECcCCcc-----cC---------cccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHh
Confidence            555555553     22         5677888888899999988876668888888888999999988887777888888


Q ss_pred             CcccccccCceeecCCCCCCCCcccCcccccCCCcccccccccccCCCChhhhhHhhcccCCCCCceeecccCchhhhhh
Q 038150          289 RLTGLRTLGEFHVSAGGGVDGRKACRLESLKNLEHLQVCGISRLGDVSDVGEAKRLELDKKKYLSSLTLWFDKEEEEEGE  368 (488)
Q Consensus       289 ~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~  368 (488)
                      ++++|++|++.+|.+.+.       ....+..+++|+.|.+....-.    ...+..+..+++|+.|++++|.+.+.++.
T Consensus       488 ~l~~L~~L~L~~N~l~~~-------~p~~~~~l~~L~~L~L~~N~l~----~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~  556 (768)
T 3rgz_A          488 NCTNLNWISLSNNRLTGE-------IPKWIGRLENLAILKLSNNSFS----GNIPAELGDCRSLIWLDLNTNLFNGTIPA  556 (768)
T ss_dssp             GCTTCCEEECCSSCCCSC-------CCGGGGGCTTCCEEECCSSCCE----EECCGGGGGCTTCCEEECCSSEEESBCCG
T ss_pred             cCCCCCEEEccCCccCCc-------CChHHhcCCCCCEEECCCCccc----CcCCHHHcCCCCCCEEECCCCccCCcCCh
Confidence            889999998888877642       2334556677777777544321    12346778889999999999887644332


Q ss_pred             hcc----------------------------------------------------------ccchHHHhhhCCCCCCCCE
Q 038150          369 RRK----------------------------------------------------------NEDNQLLLEALRPPLNLKE  390 (488)
Q Consensus       369 ~~~----------------------------------------------------------~~~~~~~~~~~~~~~~L~~  390 (488)
                      ...                                                          +......|..+..+++|+.
T Consensus       557 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~  636 (768)
T 3rgz_A          557 AMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMF  636 (768)
T ss_dssp             GGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCE
T ss_pred             HHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccE
Confidence            100                                                          1111223445667789999


Q ss_pred             EEeccccCCCCCchHHHhccCCcEEeecCCCCCCCCCC-CCCCCCcCeeeecccccceeeCcc
Q 038150          391 LEIEYYRGNTVFPSWMTSLTNLKSLDLSSCENCEQLPP-LGKLQSLENLHIWRMESVKRVGDE  452 (488)
Q Consensus       391 L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~-l~~l~~L~~L~l~~~~~l~~~~~~  452 (488)
                      |++++|.+.+.+|.+++.+++|+.|++++|...+.+|. ++.+++|+.|++++|.-...+|..
T Consensus       637 LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~  699 (768)
T 3rgz_A          637 LDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQA  699 (768)
T ss_dssp             EECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGG
T ss_pred             EECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChH
Confidence            99999999987999999999999999999999989997 999999999999999855566654

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.90  E-value=2.5e-24  Score=205.80  Aligned_cols=208  Identities=21%  Similarity=0.250  Sum_probs=138.3

Q ss_pred             cCchhhhhhccCcEeecCCCCCcccCchhhccccccceeeccCCCCCCCCCCCCCCcccccccCceeecCCCCCCCCccc
Q 038150          234 VLPETLCELYNLEKLDISDCFNLKELPEGIGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGRKAC  313 (488)
Q Consensus       234 ~lp~~i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~~  313 (488)
                      .+|..++++++|++|++++|. +..+|..++++++|++|++++|.+. .+|..++++++|++|++.+|...+..    +.
T Consensus        95 ~lp~~l~~l~~L~~L~L~~n~-l~~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~----p~  168 (328)
T 4fcg_A           95 QFPDQAFRLSHLQHMTIDAAG-LMELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTEL----PE  168 (328)
T ss_dssp             SCCSCGGGGTTCSEEEEESSC-CCCCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCC----CS
T ss_pred             hcChhhhhCCCCCEEECCCCC-ccchhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCcccc----Ch
Confidence            344444455555555555543 3355555555555555555555432 44555555555555555554433321    11


Q ss_pred             Cc------ccccCCCcccccccccccCCCChhhhhHhhcccCCCCCceeecccCchhhhhhhccccchHHHhhhCCCCCC
Q 038150          314 RL------ESLKNLEHLQVCGISRLGDVSDVGEAKRLELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLN  387 (488)
Q Consensus       314 ~~------~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  387 (488)
                      .+      ..+..+++|+.|.+....- .    .++..+..+++|+.|++++|.+.             .+|..+..+++
T Consensus       169 ~~~~~~~~~~~~~l~~L~~L~L~~n~l-~----~lp~~l~~l~~L~~L~L~~N~l~-------------~l~~~l~~l~~  230 (328)
T 4fcg_A          169 PLASTDASGEHQGLVNLQSLRLEWTGI-R----SLPASIANLQNLKSLKIRNSPLS-------------ALGPAIHHLPK  230 (328)
T ss_dssp             CSEEEC-CCCEEESTTCCEEEEEEECC-C----CCCGGGGGCTTCCEEEEESSCCC-------------CCCGGGGGCTT
T ss_pred             hHhhccchhhhccCCCCCEEECcCCCc-C----cchHhhcCCCCCCEEEccCCCCC-------------cCchhhccCCC
Confidence            11      1133455555555433221 1    12245778899999999999874             34567888999


Q ss_pred             CCEEEeccccCCCCCchHHHhccCCcEEeecCCCCCCCCCC-CCCCCCcCeeeecccccceeeCccccCCCCCCCCCCCC
Q 038150          388 LKELEIEYYRGNTVFPSWMTSLTNLKSLDLSSCENCEQLPP-LGKLQSLENLHIWRMESVKRVGDEFLGIESDHHGSSSS  466 (488)
Q Consensus       388 L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~-l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~  466 (488)
                      |+.|++++|...+.+|.+++.+++|++|++++|...+.+|. ++.+++|++|++++|..+..+|..              
T Consensus       231 L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~--------------  296 (328)
T 4fcg_A          231 LEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSL--------------  296 (328)
T ss_dssp             CCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGG--------------
T ss_pred             CCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHH--------------
Confidence            99999999988887999999999999999999999999987 899999999999999988888876              


Q ss_pred             CcccccCccccccccc
Q 038150          467 SSVIIAFPKLKSLSIE  482 (488)
Q Consensus       467 ~~~~~~~p~L~~L~l~  482 (488)
                         .+.+++|+.+.+.
T Consensus       297 ---l~~L~~L~~l~l~  309 (328)
T 4fcg_A          297 ---IAQLPANCIILVP  309 (328)
T ss_dssp             ---GGGSCTTCEEECC
T ss_pred             ---HhhccCceEEeCC
Confidence               3456677766554

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.90  E-value=7.2e-24  Score=208.12  Aligned_cols=135  Identities=17%  Similarity=0.102  Sum_probs=108.5

Q ss_pred             ccccceeeEEEEecCCcCccc-cccccCcceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccC
Q 038150          154 LDEKVRHLMLIFSKAASLPIS-TLRVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEK  232 (488)
Q Consensus       154 ~~~~vr~l~l~~~~~~~~~~~-~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~  232 (488)
                      ....++.+.+..+....+|.. +..+++|++|++.+| .+.. ..+..|..+++|++|++++|.      +..       
T Consensus        43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n-~i~~-~~~~~~~~l~~L~~L~L~~n~------l~~-------  107 (390)
T 3o6n_A           43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDL-QIEE-IDTYAFAYAHTIQKLYMGFNA------IRY-------  107 (390)
T ss_dssp             GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTS-CCCE-ECTTTTTTCTTCCEEECCSSC------CCC-------
T ss_pred             ccCCceEEEecCCchhhCChhHhcccccCcEEECCCC-cccc-cChhhccCCCCcCEEECCCCC------CCc-------
Confidence            346788999998888888865 578999999999997 5554 555568999999999999998      442       


Q ss_pred             ccCchhhhhhccCcEeecCCCCCcccCchh-hccccccceeeccCCCCCCCCCCCCCCcccccccCceeecCCC
Q 038150          233 LVLPETLCELYNLEKLDISDCFNLKELPEG-IGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFHVSAGG  305 (488)
Q Consensus       233 l~lp~~i~~L~~L~~L~l~~~~~~~~lp~~-l~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~  305 (488)
                       ..|..++++++|++|++++|. +..+|.. ++++++|++|++++|.+....|..++++++|++|++.+|.+..
T Consensus       108 -~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  179 (390)
T 3o6n_A          108 -LPPHVFQNVPLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH  179 (390)
T ss_dssp             -CCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSB
T ss_pred             -CCHHHhcCCCCCCEEECCCCc-cCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCc
Confidence             234557889999999999975 6677776 4889999999999998655556678999999999998887654

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.89  E-value=8.4e-23  Score=212.79  Aligned_cols=301  Identities=15%  Similarity=0.148  Sum_probs=178.5

Q ss_pred             CCCccc--ccccceeeEEEEecC-CcCccccccccCcceecccccchhhhhhHHHHHhcC------CccceeecCCCccc
Q 038150          148 PNATNA--LDEKVRHLMLIFSKA-ASLPISTLRVKRMRTLLINDHSLLNAAILEELFREL------TSLRALDFGGSYHS  218 (488)
Q Consensus       148 ~~~t~~--~~~~vr~l~l~~~~~-~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l------~~Lr~L~Ls~~~~~  218 (488)
                      +.....  ....++++.+..+.. ..+|..+.++++|++|++++|..+.+..+|..+.++      ++|++|++++|.  
T Consensus       239 ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~--  316 (636)
T 4eco_A          239 KTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN--  316 (636)
T ss_dssp             TTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC--
T ss_pred             CchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCc--
Confidence            444444  678899999999875 788999999999999999998525532467777776      999999999999  


Q ss_pred             ccccCCcccc--cccCc---------------cCchhhhhhccCcEeecCCCCCcccCchhhccccc-cceeeccCCCCC
Q 038150          219 TRLLTPEVPR--NIEKL---------------VLPETLCELYNLEKLDISDCFNLKELPEGIGKLIN-VKHLLNRGTNSL  280 (488)
Q Consensus       219 ~~~~~~~lp~--~i~~l---------------~lp~~i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~-L~~L~l~~~~~~  280 (488)
                          +..+|.  .++++               .+| .++.+++|++|++++|. +..+|..++.+++ |++|++++|.+.
T Consensus       317 ----l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~-l~~lp~~l~~l~~~L~~L~Ls~N~l~  390 (636)
T 4eco_A          317 ----LKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQ-ITEIPANFCGFTEQVENLSFAHNKLK  390 (636)
T ss_dssp             ----CSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSE-EEECCTTSEEECTTCCEEECCSSCCS
T ss_pred             ----CCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCc-cccccHhhhhhcccCcEEEccCCcCc
Confidence                555555  34333               344 45555555555555543 3355555555555 666666555533


Q ss_pred             CCCCCCCCCcc--cccccCceeecCCCCCCCCcccCcccccCCCcccccccccc--cCCCChhhhhHhhcccCCCCCcee
Q 038150          281 RYMPVGIGRLT--GLRTLGEFHVSAGGGVDGRKACRLESLKNLEHLQVCGISRL--GDVSDVGEAKRLELDKKKYLSSLT  356 (488)
Q Consensus       281 ~~lp~~i~~L~--~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~--~~~~~~~~~~~~~l~~l~~L~~L~  356 (488)
                       .+|..++.++  +|++|++.+|.+.+..+..........-.+.+|+.|.+...  ..++.      ..+..+++|+.|+
T Consensus       391 -~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~------~~~~~l~~L~~L~  463 (636)
T 4eco_A          391 -YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPK------ELFSTGSPLSSIN  463 (636)
T ss_dssp             -SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCT------HHHHTTCCCSEEE
T ss_pred             -ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCH------HHHccCCCCCEEE
Confidence             5555544433  55555555555443211111100000003445555555332  22221      2223355555555


Q ss_pred             ecccCchhhhhh-------------------hccccchHHHhhhCC--CCCCCCEEEeccccCCCCCchHHHhccCCcEE
Q 038150          357 LWFDKEEEEEGE-------------------RRKNEDNQLLLEALR--PPLNLKELEIEYYRGNTVFPSWMTSLTNLKSL  415 (488)
Q Consensus       357 l~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L  415 (488)
                      +++|.+......                   ...+.. ..+|..+.  .+++|+.|++++|.+.. +|.+++.+++|+.|
T Consensus       464 Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l-~~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L  541 (636)
T 4eco_A          464 LMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKL-TKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGF  541 (636)
T ss_dssp             CCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCC-CBCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEE
T ss_pred             CCCCCCCCcCHHHhccccccccccCCccEEECcCCcC-CccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEE
Confidence            555554311100                   001111 24555555  67777777777777777 77777777778877


Q ss_pred             eec------CCCCCCCCCC-CCCCCCcCeeeecccccceeeCccccCCCCCCCCCCCCCcccccCcccccccccccc
Q 038150          416 DLS------SCENCEQLPP-LGKLQSLENLHIWRMESVKRVGDEFLGIESDHHGSSSSSSVIIAFPKLKSLSIEVLR  485 (488)
Q Consensus       416 ~l~------~~~~~~~~~~-l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~p  485 (488)
                      +++      +|...+.+|. ++.+++|++|++++|. ++.+|..                   .+++|+.|+++++|
T Consensus       542 ~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~ip~~-------------------~~~~L~~L~Ls~N~  598 (636)
T 4eco_A          542 GIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSND-IRKVNEK-------------------ITPNISVLDIKDNP  598 (636)
T ss_dssp             ECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSC-CCBCCSC-------------------CCTTCCEEECCSCT
T ss_pred             ECCCCcccccCcccccChHHHhcCCCCCEEECCCCc-CCccCHh-------------------HhCcCCEEECcCCC
Confidence            774      4555556665 7777778888887776 4555543                   24789999988875

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.89  E-value=1.5e-23  Score=217.14  Aligned_cols=134  Identities=17%  Similarity=0.106  Sum_probs=101.0

Q ss_pred             cccceeeEEEEecCCcCccc-cccccCcceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccCc
Q 038150          155 DEKVRHLMLIFSKAASLPIS-TLRVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKL  233 (488)
Q Consensus       155 ~~~vr~l~l~~~~~~~~~~~-~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l  233 (488)
                      ...++.+.+..+....+|.. +..+++|++|++.+| .+.. ..+..|..+++|++|+|++|.      +..        
T Consensus        50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n-~l~~-~~~~~~~~l~~L~~L~L~~n~------l~~--------  113 (597)
T 3oja_B           50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDL-QIEE-IDTYAFAYAHTIQKLYMGFNA------IRY--------  113 (597)
T ss_dssp             GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTS-CCCE-ECTTTTTTCTTCCEEECCSSC------CCC--------
T ss_pred             CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCC-CCCC-CChHHhcCCCCCCEEECCCCc------CCC--------
Confidence            35667788877777777764 567889999999887 4554 555568889999999999988      432        


Q ss_pred             cCchhhhhhccCcEeecCCCCCcccCchh-hccccccceeeccCCCCCCCCCCCCCCcccccccCceeecCCC
Q 038150          234 VLPETLCELYNLEKLDISDCFNLKELPEG-IGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFHVSAGG  305 (488)
Q Consensus       234 ~lp~~i~~L~~L~~L~l~~~~~~~~lp~~-l~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~  305 (488)
                      ..|..++++++|++|++++|. +..+|.. ++++++|++|++++|.+....|..++++++|++|++++|.+.+
T Consensus       114 ~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~  185 (597)
T 3oja_B          114 LPPHVFQNVPLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH  185 (597)
T ss_dssp             CCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSB
T ss_pred             CCHHHHcCCCCCCEEEeeCCC-CCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCC
Confidence            223456788888999998875 5667665 4888889999988888666556678888888888888876654

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.89  E-value=4.2e-24  Score=202.99  Aligned_cols=251  Identities=16%  Similarity=0.081  Sum_probs=200.0

Q ss_pred             cCcceecccccchhhh-hhHHHHHhcCCccceeecCC-CcccccccCCcccccccCccCchhhhhhccCcEeecCCCCCc
Q 038150          179 KRMRTLLINDHSLLNA-AILEELFRELTSLRALDFGG-SYHSTRLLTPEVPRNIEKLVLPETLCELYNLEKLDISDCFNL  256 (488)
Q Consensus       179 ~~Lr~L~l~~~~~~~~-~~~~~~~~~l~~Lr~L~Ls~-~~~~~~~~~~~lp~~i~~l~lp~~i~~L~~L~~L~l~~~~~~  256 (488)
                      .++++|++.++ .+.+ ..+|..+.++++|++|++++ +.+     .+         .+|..++++++|++|++++|...
T Consensus        50 ~~l~~L~L~~~-~l~~~~~~~~~l~~l~~L~~L~L~~~n~l-----~~---------~~p~~l~~l~~L~~L~Ls~n~l~  114 (313)
T 1ogq_A           50 YRVNNLDLSGL-NLPKPYPIPSSLANLPYLNFLYIGGINNL-----VG---------PIPPAIAKLTQLHYLYITHTNVS  114 (313)
T ss_dssp             CCEEEEEEECC-CCSSCEECCGGGGGCTTCSEEEEEEETTE-----ES---------CCCGGGGGCTTCSEEEEEEECCE
T ss_pred             ceEEEEECCCC-CccCCcccChhHhCCCCCCeeeCCCCCcc-----cc---------cCChhHhcCCCCCEEECcCCeeC
Confidence            58999999997 4432 02456689999999999995 775     55         67888999999999999998866


Q ss_pred             ccCchhhccccccceeeccCCCCCCCCCCCCCCcccccccCceeecCCCCCCCCcccCcccccCCC-cccccccccccCC
Q 038150          257 KELPEGIGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGRKACRLESLKNLE-HLQVCGISRLGDV  335 (488)
Q Consensus       257 ~~lp~~l~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~-~L~~L~~~~~~~~  335 (488)
                      ..+|..++++++|++|++++|.+...+|..++++++|++|++.+|.+.+       .....+..+. +|+.|.+....-.
T Consensus       115 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~-------~~p~~l~~l~~~L~~L~L~~N~l~  187 (313)
T 1ogq_A          115 GAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISG-------AIPDSYGSFSKLFTSMTISRNRLT  187 (313)
T ss_dssp             EECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEE-------ECCGGGGCCCTTCCEEECCSSEEE
T ss_pred             CcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccC-------cCCHHHhhhhhcCcEEECcCCeee
Confidence            6899999999999999999999777889999999999999999987653       2234555665 7777777543211


Q ss_pred             CChhhhhHhhcccCCCCCceeecccCchhhhhhhccccchHHHhhhCCCCCCCCEEEeccccCCCCCchHHHhccCCcEE
Q 038150          336 SDVGEAKRLELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKELEIEYYRGNTVFPSWMTSLTNLKSL  415 (488)
Q Consensus       336 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L  415 (488)
                          ...+..+..++ |+.|++++|.+.            ...+..+..+++|+.|++++|.+.. .+..+..+++|++|
T Consensus       188 ----~~~~~~~~~l~-L~~L~Ls~N~l~------------~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~l~~L~~L  249 (313)
T 1ogq_A          188 ----GKIPPTFANLN-LAFVDLSRNMLE------------GDASVLFGSDKNTQKIHLAKNSLAF-DLGKVGLSKNLNGL  249 (313)
T ss_dssp             ----EECCGGGGGCC-CSEEECCSSEEE------------ECCGGGCCTTSCCSEEECCSSEECC-BGGGCCCCTTCCEE
T ss_pred             ----ccCChHHhCCc-ccEEECcCCccc------------CcCCHHHhcCCCCCEEECCCCceee-ecCcccccCCCCEE
Confidence                01224556666 999999999875            3456788999999999999999887 44447889999999


Q ss_pred             eecCCCCCCCCCC-CCCCCCcCeeeecccccceeeCccccCCCCCCCCCCCCCcccccCcccccccccccccC
Q 038150          416 DLSSCENCEQLPP-LGKLQSLENLHIWRMESVKRVGDEFLGIESDHHGSSSSSSVIIAFPKLKSLSIEVLREL  487 (488)
Q Consensus       416 ~l~~~~~~~~~~~-l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~p~L  487 (488)
                      ++++|...+.+|. ++.+++|++|++++|.-...+|.                  .+.+++|+.|.+.+.|.+
T Consensus       250 ~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~------------------~~~l~~L~~l~l~~N~~l  304 (313)
T 1ogq_A          250 DLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ------------------GGNLQRFDVSAYANNKCL  304 (313)
T ss_dssp             ECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC------------------STTGGGSCGGGTCSSSEE
T ss_pred             ECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCC------------------CccccccChHHhcCCCCc
Confidence            9999998777876 89999999999999974335543                  346899999999998754

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.88  E-value=3e-22  Score=212.66  Aligned_cols=285  Identities=17%  Similarity=0.155  Sum_probs=164.7

Q ss_pred             ccccceeeEEEEecC-CcCccccccccCcceecccccchhhhhhHHHHHhcCC-------ccceeecCCCcccccccCCc
Q 038150          154 LDEKVRHLMLIFSKA-ASLPISTLRVKRMRTLLINDHSLLNAAILEELFRELT-------SLRALDFGGSYHSTRLLTPE  225 (488)
Q Consensus       154 ~~~~vr~l~l~~~~~-~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~-------~Lr~L~Ls~~~~~~~~~~~~  225 (488)
                      ....++.+.+..+.. ..+|..+.++++|++|++++|..+.+..+|..+.++.       +|++|+|++|.      +..
T Consensus       489 ~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~------L~~  562 (876)
T 4ecn_A          489 NLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN------LEE  562 (876)
T ss_dssp             GCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC------CCB
T ss_pred             cCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc------CCc
Confidence            667899999999874 7889999999999999999985254324666666665       99999999999      444


Q ss_pred             ccccccCccCch--hhhhhccCcEeecCCCCCcccCchhhccccccceeeccCCCCCCCCCCCCCCccc-ccccCceeec
Q 038150          226 VPRNIEKLVLPE--TLCELYNLEKLDISDCFNLKELPEGIGKLINVKHLLNRGTNSLRYMPVGIGRLTG-LRTLGEFHVS  302 (488)
Q Consensus       226 lp~~i~~l~lp~--~i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~L~l~~~~~~~~lp~~i~~L~~-L~~L~l~~~~  302 (488)
                      +         |.  .++++++|++|++++|. +..+| .++++++|++|++++|.+. .+|..++++++ |++|++.+|.
T Consensus       563 i---------p~~~~l~~L~~L~~L~Ls~N~-l~~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~  630 (876)
T 4ecn_A          563 F---------PASASLQKMVKLGLLDCVHNK-VRHLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNK  630 (876)
T ss_dssp             C---------CCHHHHTTCTTCCEEECTTSC-CCBCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSC
T ss_pred             c---------CChhhhhcCCCCCEEECCCCC-cccch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCC
Confidence            4         44  55555566666666544 33555 5555555666666555533 55555555555 5555555554


Q ss_pred             CCCCCCCC----------------------cccCccccc--CCCccccccccccc--CCCChhhhhHhhcccCCCCCcee
Q 038150          303 AGGGVDGR----------------------KACRLESLK--NLEHLQVCGISRLG--DVSDVGEAKRLELDKKKYLSSLT  356 (488)
Q Consensus       303 ~~~~~~~~----------------------~~~~~~~l~--~L~~L~~L~~~~~~--~~~~~~~~~~~~l~~l~~L~~L~  356 (488)
                      +.. .+..                      .+.....+.  .+.+|+.|.++...  .++      ...+..+++|+.|+
T Consensus       631 L~~-lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp------~~~~~~l~~L~~L~  703 (876)
T 4ecn_A          631 LKY-IPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFP------TELFATGSPISTII  703 (876)
T ss_dssp             CCS-CCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCC------HHHHHTTCCCSEEE
T ss_pred             CCc-CchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccC------HHHHccCCCCCEEE
Confidence            432 1100                      000001111  11244444443221  111      11223455555555


Q ss_pred             ecccCchhhhhh-------------------hccccchHHHhhhCC--CCCCCCEEEeccccCCCCCchHHHhccCCcEE
Q 038150          357 LWFDKEEEEEGE-------------------RRKNEDNQLLLEALR--PPLNLKELEIEYYRGNTVFPSWMTSLTNLKSL  415 (488)
Q Consensus       357 l~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L  415 (488)
                      +++|.+......                   ...+.. ..+|..+.  .+++|+.|+|++|.+.. +|..++.+++|+.|
T Consensus       704 Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L-~~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L  781 (876)
T 4ecn_A          704 LSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKL-TSLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAF  781 (876)
T ss_dssp             CCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCC-CCCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEE
T ss_pred             CCCCcCCccChHHhccccccccccCCccEEECCCCCC-ccchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEE
Confidence            555554311100                   000111 13455554  66677777777776666 66666677777777


Q ss_pred             eecC------CCCCCCCCC-CCCCCCcCeeeecccccceeeCccccCCCCCCCCCCCCCcccccCcccccccccccc
Q 038150          416 DLSS------CENCEQLPP-LGKLQSLENLHIWRMESVKRVGDEFLGIESDHHGSSSSSSVIIAFPKLKSLSIEVLR  485 (488)
Q Consensus       416 ~l~~------~~~~~~~~~-l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~p  485 (488)
                      +|++      |.....+|. ++.+++|+.|++++|. +..+|..                   .+++|+.|+|+++|
T Consensus       782 ~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~-L~~Ip~~-------------------l~~~L~~LdLs~N~  838 (876)
T 4ecn_A          782 GIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSND-IRKVDEK-------------------LTPQLYILDIADNP  838 (876)
T ss_dssp             ECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSC-CCBCCSC-------------------CCSSSCEEECCSCT
T ss_pred             ECCCCCCcccccccccChHHHhcCCCCCEEECCCCC-CCccCHh-------------------hcCCCCEEECCCCC
Confidence            7755      444555554 6667777777777665 3555433                   24688888888876

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.87  E-value=2.3e-22  Score=202.90  Aligned_cols=248  Identities=21%  Similarity=0.179  Sum_probs=162.4

Q ss_pred             ccccceeeEEEEecCCcC-ccccccccCcceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccC
Q 038150          154 LDEKVRHLMLIFSKAASL-PISTLRVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEK  232 (488)
Q Consensus       154 ~~~~vr~l~l~~~~~~~~-~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~  232 (488)
                      ....++.+++..+....+ +..+.++++|++|++.+| .+.. ..|..|.++++|++|+|++|.      +.        
T Consensus        30 ~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~i~~-~~~~~~~~l~~L~~L~L~~n~------l~--------   93 (477)
T 2id5_A           30 IPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNEN-IVSA-VEPGAFNNLFNLRTLGLRSNR------LK--------   93 (477)
T ss_dssp             CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTS-CCCE-ECTTTTTTCTTCCEEECCSSC------CC--------
T ss_pred             CCCCCcEEECCCCccceECHhHccCCCCCCEEECCCC-ccCE-eChhhhhCCccCCEEECCCCc------CC--------
Confidence            345788999998888776 457888999999999997 5554 556778999999999999998      55        


Q ss_pred             ccCch-hhhhhccCcEeecCCCCCcccCchhhccccccceeeccCCCCCCCCCCCCCCcccccccCceeecCCCCCCCCc
Q 038150          233 LVLPE-TLCELYNLEKLDISDCFNLKELPEGIGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGRK  311 (488)
Q Consensus       233 l~lp~-~i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~  311 (488)
                       .+|. .++++++|++|++++|......|..+..+++|++|++++|.+....|..++++++|++|++.+|.+..     .
T Consensus        94 -~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-----~  167 (477)
T 2id5_A           94 -LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTS-----I  167 (477)
T ss_dssp             -SCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSS-----C
T ss_pred             -ccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcc-----c
Confidence             3333 35788899999999987555567778889999999999988655556778889999999998886654     1


Q ss_pred             ccCcccccCCCccccccccccc--CCCChhhhhHhhcccCCCCCceeecccCchhhhhhhccccchHHHhhhCCCCCCCC
Q 038150          312 ACRLESLKNLEHLQVCGISRLG--DVSDVGEAKRLELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLK  389 (488)
Q Consensus       312 ~~~~~~l~~L~~L~~L~~~~~~--~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~  389 (488)
                        ....+.++++|+.|.+....  .+.      ...+..+++|+.|++++|...            ..++.......+|+
T Consensus       168 --~~~~l~~l~~L~~L~l~~n~i~~~~------~~~~~~l~~L~~L~l~~~~~~------------~~~~~~~~~~~~L~  227 (477)
T 2id5_A          168 --PTEALSHLHGLIVLRLRHLNINAIR------DYSFKRLYRLKVLEISHWPYL------------DTMTPNCLYGLNLT  227 (477)
T ss_dssp             --CHHHHTTCTTCCEEEEESCCCCEEC------TTCSCSCTTCCEEEEECCTTC------------CEECTTTTTTCCCS
T ss_pred             --ChhHhcccCCCcEEeCCCCcCcEeC------hhhcccCcccceeeCCCCccc------------cccCcccccCcccc
Confidence              12335566666666654322  111      134556666777777665432            12223333333555


Q ss_pred             EEEeccccCCCCCc-hHHHhccCCcEEeecCCCCCCCCCC-CCCCCCcCeeeecccc
Q 038150          390 ELEIEYYRGNTVFP-SWMTSLTNLKSLDLSSCENCEQLPP-LGKLQSLENLHIWRME  444 (488)
Q Consensus       390 ~L~l~~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~~~~~-l~~l~~L~~L~l~~~~  444 (488)
                      .|++++|.+.. +| ..+..+++|+.|++++|......+. +..+++|+.|++++|.
T Consensus       228 ~L~l~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~  283 (477)
T 2id5_A          228 SLSITHCNLTA-VPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQ  283 (477)
T ss_dssp             EEEEESSCCCS-CCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSC
T ss_pred             EEECcCCcccc-cCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCc
Confidence            55555555554 43 3344555555555555553332222 4455555555555543

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.87  E-value=6.2e-22  Score=191.15  Aligned_cols=268  Identities=16%  Similarity=0.169  Sum_probs=153.8

Q ss_pred             cccccceeeEEEEecCCcCccccccccCcceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccC
Q 038150          153 ALDEKVRHLMLIFSKAASLPISTLRVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEK  232 (488)
Q Consensus       153 ~~~~~vr~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~  232 (488)
                      .....++.+++..+....++. +..+++|++|++.+| .+..  ++ .+..+++|++|++++|.      +.        
T Consensus        63 ~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n-~i~~--~~-~~~~l~~L~~L~l~~n~------i~--------  123 (347)
T 4fmz_A           63 EYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTN-KITD--IS-ALQNLTNLRELYLNEDN------IS--------  123 (347)
T ss_dssp             GGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCC--CG-GGTTCTTCSEEECTTSC------CC--------
T ss_pred             hhcCCccEEEccCCccccchh-hhcCCcCCEEEccCC-cccC--ch-HHcCCCcCCEEECcCCc------cc--------
Confidence            345677888888887777765 778888888888887 4443  33 37788888888888887      44        


Q ss_pred             ccCchhhhhhccCcEeecCCCCCcccCchhhccccccceeeccCCCCCCCCCCCCCCcccccccCceeecCCCCCCCC--
Q 038150          233 LVLPETLCELYNLEKLDISDCFNLKELPEGIGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGR--  310 (488)
Q Consensus       233 l~lp~~i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~--  310 (488)
                       .+|. +..+++|++|++++|.....++ .+..+++|++|++++|... .++. ++.+++|++|++.+|.+.+...-.  
T Consensus       124 -~~~~-~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~-~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l  198 (347)
T 4fmz_A          124 -DISP-LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVK-DVTP-IANLTDLYSLSLNYNQIEDISPLASL  198 (347)
T ss_dssp             -CCGG-GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCC-CCGG-GGGCTTCSEEECTTSCCCCCGGGGGC
T ss_pred             -Cchh-hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcC-Cchh-hccCCCCCEEEccCCcccccccccCC
Confidence             2333 5566667777776665444443 3666666666666666532 2222 556666666666655443310000  


Q ss_pred             -----------cccCcccccCCCcccccccccccCCCChhhhhHhhcccCCCCCceeecccCchhhhhhhccccchHHHh
Q 038150          311 -----------KACRLESLKNLEHLQVCGISRLGDVSDVGEAKRLELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLL  379 (488)
Q Consensus       311 -----------~~~~~~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~  379 (488)
                                 ....+..+..+++|+.|.+.+..-...      ..+..+++|+.|++++|.+..             + 
T Consensus       199 ~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~------~~~~~l~~L~~L~l~~n~l~~-------------~-  258 (347)
T 4fmz_A          199 TSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDL------SPLANLSQLTWLEIGTNQISD-------------I-  258 (347)
T ss_dssp             TTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCC------GGGTTCTTCCEEECCSSCCCC-------------C-
T ss_pred             CccceeecccCCCCCCchhhcCCcCCEEEccCCccCCC------cchhcCCCCCEEECCCCccCC-------------C-
Confidence                       000001133344444444433221110      114455555555555555421             1 


Q ss_pred             hhCCCCCCCCEEEeccccCCCCCchHHHhccCCcEEeecCCCCCCCCCC-CCCCCCcCeeeecccccceeeCccccCCCC
Q 038150          380 EALRPPLNLKELEIEYYRGNTVFPSWMTSLTNLKSLDLSSCENCEQLPP-LGKLQSLENLHIWRMESVKRVGDEFLGIES  458 (488)
Q Consensus       380 ~~~~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~-l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~  458 (488)
                      +.+..+++|+.|++++|.+.. +| .+..+++|+.|++++|......+. ++.+++|++|++++|+ +..++.       
T Consensus       259 ~~~~~l~~L~~L~l~~n~l~~-~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~-------  328 (347)
T 4fmz_A          259 NAVKDLTKLKMLNVGSNQISD-IS-VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNH-ITDIRP-------  328 (347)
T ss_dssp             GGGTTCTTCCEEECCSSCCCC-CG-GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSS-CCCCGG-------
T ss_pred             hhHhcCCCcCEEEccCCccCC-Ch-hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCc-cccccC-------
Confidence            345556666666666666655 43 355666677777776665444443 5666777777776665 333321       


Q ss_pred             CCCCCCCCCcccccCcccccccccccc
Q 038150          459 DHHGSSSSSSVIIAFPKLKSLSIEVLR  485 (488)
Q Consensus       459 ~~~~~~~~~~~~~~~p~L~~L~l~~~p  485 (488)
                                 .+.+|+|++|++.+++
T Consensus       329 -----------~~~l~~L~~L~l~~N~  344 (347)
T 4fmz_A          329 -----------LASLSKMDSADFANQV  344 (347)
T ss_dssp             -----------GGGCTTCSEESSSCC-
T ss_pred             -----------hhhhhccceeehhhhc
Confidence                       4468899999988875

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.87  E-value=1e-21  Score=189.71  Aligned_cols=272  Identities=19%  Similarity=0.186  Sum_probs=170.6

Q ss_pred             cccccceeeEEEEecCCcCccccccccCcceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccC
Q 038150          153 ALDEKVRHLMLIFSKAASLPISTLRVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEK  232 (488)
Q Consensus       153 ~~~~~vr~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~  232 (488)
                      .....++++.+..+....++ .+..+++|++|++.+| .+..  ++. +..+++|++|++++|.      +.        
T Consensus        41 ~~l~~L~~L~l~~~~i~~~~-~~~~~~~L~~L~l~~n-~i~~--~~~-~~~l~~L~~L~L~~n~------i~--------  101 (347)
T 4fmz_A           41 EELESITKLVVAGEKVASIQ-GIEYLTNLEYLNLNGN-QITD--ISP-LSNLVKLTNLYIGTNK------IT--------  101 (347)
T ss_dssp             HHHTTCSEEECCSSCCCCCT-TGGGCTTCCEEECCSS-CCCC--CGG-GTTCTTCCEEECCSSC------CC--------
T ss_pred             hhcccccEEEEeCCccccch-hhhhcCCccEEEccCC-cccc--chh-hhcCCcCCEEEccCCc------cc--------
Confidence            35678889999988888887 4788999999999998 5553  333 8999999999999998      44        


Q ss_pred             ccCchhhhhhccCcEeecCCCCCcccCchhhccccccceeeccCCCCCCCCCCCCCCcccccccCceeecCCCCCCCCcc
Q 038150          233 LVLPETLCELYNLEKLDISDCFNLKELPEGIGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGRKA  312 (488)
Q Consensus       233 l~lp~~i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~  312 (488)
                       .+| .++.+++|++|++++|. +..+|. +..+++|++|++++|.....++ .++++++|++|++.++....       
T Consensus       102 -~~~-~~~~l~~L~~L~l~~n~-i~~~~~-~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~-------  169 (347)
T 4fmz_A          102 -DIS-ALQNLTNLRELYLNEDN-ISDISP-LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKD-------  169 (347)
T ss_dssp             -CCG-GGTTCTTCSEEECTTSC-CCCCGG-GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCC-------
T ss_pred             -Cch-HHcCCCcCCEEECcCCc-ccCchh-hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCC-------
Confidence             333 58899999999999976 667765 8999999999999997555544 48999999999999887654       


Q ss_pred             cCcccccCCCcccccccccccCCCChhhhhHhhcccCCCCCceeecccCchhhhhh----------hccccchHHHhhhC
Q 038150          313 CRLESLKNLEHLQVCGISRLGDVSDVGEAKRLELDKKKYLSSLTLWFDKEEEEEGE----------RRKNEDNQLLLEAL  382 (488)
Q Consensus       313 ~~~~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~----------~~~~~~~~~~~~~~  382 (488)
                        +..+..+++|+.|.+....-...      ..+..+++|+.|++++|.+......          ...+.. ..++. +
T Consensus       170 --~~~~~~l~~L~~L~l~~n~l~~~------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l-~~~~~-~  239 (347)
T 4fmz_A          170 --VTPIANLTDLYSLSLNYNQIEDI------SPLASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKI-TDLSP-L  239 (347)
T ss_dssp             --CGGGGGCTTCSEEECTTSCCCCC------GGGGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCC-CCCGG-G
T ss_pred             --chhhccCCCCCEEEccCCccccc------ccccCCCccceeecccCCCCCCchhhcCCcCCEEEccCCcc-CCCcc-h
Confidence              12255667777766654432111      1144455555555555544321000          000000 01111 4


Q ss_pred             CCCCCCCEEEeccccCCCCCchHHHhccCCcEEeecCCCCCCCCCCCCCCCCcCeeeecccccceeeCccccCCCCCCCC
Q 038150          383 RPPLNLKELEIEYYRGNTVFPSWMTSLTNLKSLDLSSCENCEQLPPLGKLQSLENLHIWRMESVKRVGDEFLGIESDHHG  462 (488)
Q Consensus       383 ~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~  462 (488)
                      ..+++|+.|++++|.+.. + ..+..+++|++|++++|.. ..++.++.+++|+.|++++|. +...+..          
T Consensus       240 ~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~l~~n~l-~~~~~~~~l~~L~~L~L~~n~-l~~~~~~----------  305 (347)
T 4fmz_A          240 ANLSQLTWLEIGTNQISD-I-NAVKDLTKLKMLNVGSNQI-SDISVLNNLSQLNSLFLNNNQ-LGNEDME----------  305 (347)
T ss_dssp             TTCTTCCEEECCSSCCCC-C-GGGTTCTTCCEEECCSSCC-CCCGGGGGCTTCSEEECCSSC-CCGGGHH----------
T ss_pred             hcCCCCCEEECCCCccCC-C-hhHhcCCCcCEEEccCCcc-CCChhhcCCCCCCEEECcCCc-CCCcChh----------
Confidence            444555555555554443 3 2344555555555555542 223334455555555555554 2222111          


Q ss_pred             CCCCCcccccCcccccccccccc
Q 038150          463 SSSSSSVIIAFPKLKSLSIEVLR  485 (488)
Q Consensus       463 ~~~~~~~~~~~p~L~~L~l~~~p  485 (488)
                            ..+.+|+|++|.+++|+
T Consensus       306 ------~l~~l~~L~~L~L~~n~  322 (347)
T 4fmz_A          306 ------VIGGLTNLTTLFLSQNH  322 (347)
T ss_dssp             ------HHHTCTTCSEEECCSSS
T ss_pred             ------HhhccccCCEEEccCCc
Confidence                  13457888888887765

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.87  E-value=6e-23  Score=207.14  Aligned_cols=277  Identities=20%  Similarity=0.172  Sum_probs=201.0

Q ss_pred             cccccceeeEEEEecCCcC-ccccccccCcceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCccccccc
Q 038150          153 ALDEKVRHLMLIFSKAASL-PISTLRVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIE  231 (488)
Q Consensus       153 ~~~~~vr~l~l~~~~~~~~-~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~  231 (488)
                      .....++.+.+..+....+ |..+.++++|++|++.+| .+.. ..+..|.++++|++|+|++|.+      ..      
T Consensus        53 ~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~-~~~~~~~~l~~L~~L~Ls~n~i------~~------  118 (477)
T 2id5_A           53 ASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN-RLKL-IPLGVFTGLSNLTKLDISENKI------VI------  118 (477)
T ss_dssp             TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCS-CCTTSSTTCTTCCEEECTTSCC------CE------
T ss_pred             cCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC-cCCc-cCcccccCCCCCCEEECCCCcc------cc------
Confidence            4457888999988877665 667889999999999997 5554 4445578899999999999984      32      


Q ss_pred             CccCchhhhhhccCcEeecCCCCCcccCchhhccccccceeeccCCCCCCCCCCCCCCcccccccCceeecCCCCCCCCc
Q 038150          232 KLVLPETLCELYNLEKLDISDCFNLKELPEGIGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGRK  311 (488)
Q Consensus       232 ~l~lp~~i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~  311 (488)
                        ..|..+..+++|++|++++|......|..+..+++|++|++++|.+....+..++++++|+.|++.+|.+..      
T Consensus       119 --~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~------  190 (477)
T 2id5_A          119 --LLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINA------  190 (477)
T ss_dssp             --ECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCE------
T ss_pred             --CChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcE------
Confidence              345567888999999999977545556678899999999999988544333458889999999998887654      


Q ss_pred             ccCcccccCCCcccccccccccCCCChhhhhHhhcccCCCCCceeecccCchhhhhhhccccchHHHhhhCCCCCCCCEE
Q 038150          312 ACRLESLKNLEHLQVCGISRLGDVSDVGEAKRLELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKEL  391 (488)
Q Consensus       312 ~~~~~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L  391 (488)
                       .....+..+++|+.|.+.........    +.......+|+.|++++|.+...            .+..+..+++|+.|
T Consensus       191 -~~~~~~~~l~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~n~l~~~------------~~~~~~~l~~L~~L  253 (477)
T 2id5_A          191 -IRDYSFKRLYRLKVLEISHWPYLDTM----TPNCLYGLNLTSLSITHCNLTAV------------PYLAVRHLVYLRFL  253 (477)
T ss_dssp             -ECTTCSCSCTTCCEEEEECCTTCCEE----CTTTTTTCCCSEEEEESSCCCSC------------CHHHHTTCTTCCEE
T ss_pred             -eChhhcccCcccceeeCCCCcccccc----CcccccCccccEEECcCCccccc------------CHHHhcCccccCee
Confidence             11234566777777777654433221    12223345888999998887422            12456778889999


Q ss_pred             EeccccCCCCCchHHHhccCCcEEeecCCCCCCCCCC-CCCCCCcCeeeecccccceeeCccccCCCCCCCCCCCCCccc
Q 038150          392 EIEYYRGNTVFPSWMTSLTNLKSLDLSSCENCEQLPP-LGKLQSLENLHIWRMESVKRVGDEFLGIESDHHGSSSSSSVI  470 (488)
Q Consensus       392 ~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~-l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  470 (488)
                      +|++|.+....+..+..+++|+.|++++|......|. +..+++|+.|++++|. ++.++...                .
T Consensus       254 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~----------------~  316 (477)
T 2id5_A          254 NLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQ-LTTLEESV----------------F  316 (477)
T ss_dssp             ECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSC-CSCCCGGG----------------B
T ss_pred             ECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCc-CceeCHhH----------------c
Confidence            9998888774455677888999999988886665555 7888999999998885 66665543                2


Q ss_pred             ccCcccccccccccc
Q 038150          471 IAFPKLKSLSIEVLR  485 (488)
Q Consensus       471 ~~~p~L~~L~l~~~p  485 (488)
                      ..+++|+.|.+.++|
T Consensus       317 ~~l~~L~~L~l~~N~  331 (477)
T 2id5_A          317 HSVGNLETLILDSNP  331 (477)
T ss_dssp             SCGGGCCEEECCSSC
T ss_pred             CCCcccCEEEccCCC
Confidence            357888888887664

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.87  E-value=2e-22  Score=210.01  Aligned_cols=289  Identities=12%  Similarity=0.114  Sum_probs=181.5

Q ss_pred             CCcccccccceeeEEEEecCCc------------------Cccccc--cccCcceecccccchhhhhhHHHHHhcCCccc
Q 038150          149 NATNALDEKVRHLMLIFSKAAS------------------LPISTL--RVKRMRTLLINDHSLLNAAILEELFRELTSLR  208 (488)
Q Consensus       149 ~~t~~~~~~vr~l~l~~~~~~~------------------~~~~~~--~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr  208 (488)
                      .........++.+++..+....                  +|..++  ++++|++|++.+| .+.+ .+|..+.++++|+
T Consensus       199 p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n-~l~~-~~p~~l~~l~~L~  276 (636)
T 4eco_A          199 SKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNC-PNLT-KLPTFLKALPEMQ  276 (636)
T ss_dssp             CGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECC-TTCS-SCCTTTTTCSSCC
T ss_pred             CHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCC-cCCc-cChHHHhcCCCCC
Confidence            3334556788899999888866                  888888  8999999999987 4444 5777788999999


Q ss_pred             eeecCCCc-ccccccCCcccccccCccCchhhhhh------ccCcEeecCCCCCcccCch--hhccccccceeeccCCCC
Q 038150          209 ALDFGGSY-HSTRLLTPEVPRNIEKLVLPETLCEL------YNLEKLDISDCFNLKELPE--GIGKLINVKHLLNRGTNS  279 (488)
Q Consensus       209 ~L~Ls~~~-~~~~~~~~~lp~~i~~l~lp~~i~~L------~~L~~L~l~~~~~~~~lp~--~l~~L~~L~~L~l~~~~~  279 (488)
                      +|++++|. +     .+.        .+|..++.+      ++|++|++++|. +..+|.  .++++++|++|++++|.+
T Consensus       277 ~L~Ls~n~~l-----~~~--------~lp~~~~~L~~~~~l~~L~~L~L~~n~-l~~ip~~~~l~~l~~L~~L~L~~N~l  342 (636)
T 4eco_A          277 LINVACNRGI-----SGE--------QLKDDWQALADAPVGEKIQIIYIGYNN-LKTFPVETSLQKMKKLGMLECLYNQL  342 (636)
T ss_dssp             EEECTTCTTS-----CHH--------HHHHHHHHHHHSGGGGTCCEEECCSSC-CSSCCCHHHHTTCTTCCEEECCSCCC
T ss_pred             EEECcCCCCC-----ccc--------cchHHHHhhhccccCCCCCEEECCCCc-CCccCchhhhccCCCCCEEeCcCCcC
Confidence            99999997 4     320        255666665      888888888876 447887  788888888888888876


Q ss_pred             CCCCCCCCCCcccccccCceeecCCCCCCCCcccCcccccCCCc-ccccccccc--cCCCChhhhhHhhcccC--CCCCc
Q 038150          280 LRYMPVGIGRLTGLRTLGEFHVSAGGGVDGRKACRLESLKNLEH-LQVCGISRL--GDVSDVGEAKRLELDKK--KYLSS  354 (488)
Q Consensus       280 ~~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~-L~~L~~~~~--~~~~~~~~~~~~~l~~l--~~L~~  354 (488)
                      .+.+| .++++++|++|++.+|.+..     .+..   +..+++ |+.|.+...  ..++       ..+..+  ++|+.
T Consensus       343 ~g~ip-~~~~l~~L~~L~L~~N~l~~-----lp~~---l~~l~~~L~~L~Ls~N~l~~lp-------~~~~~~~l~~L~~  406 (636)
T 4eco_A          343 EGKLP-AFGSEIKLASLNLAYNQITE-----IPAN---FCGFTEQVENLSFAHNKLKYIP-------NIFDAKSVSVMSA  406 (636)
T ss_dssp             EEECC-CCEEEEEESEEECCSSEEEE-----CCTT---SEEECTTCCEEECCSSCCSSCC-------SCCCTTCSSCEEE
T ss_pred             ccchh-hhCCCCCCCEEECCCCcccc-----ccHh---hhhhcccCcEEEccCCcCcccc-------hhhhhcccCccCE
Confidence            55777 78888888888887776543     2333   344444 555555332  2222       233333  36777


Q ss_pred             eeecccCchhhhhhhccccchHHHhhhCC-------CCCCCCEEEeccccCCCCCchHHH-hccCCcEEeecCCCCCCCC
Q 038150          355 LTLWFDKEEEEEGERRKNEDNQLLLEALR-------PPLNLKELEIEYYRGNTVFPSWMT-SLTNLKSLDLSSCENCEQL  426 (488)
Q Consensus       355 L~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~L~~L~l~~~~~~~~lp~~~~-~l~~L~~L~l~~~~~~~~~  426 (488)
                      |++++|.+.            ...|..+.       .+++|+.|++++|.+.. +|..+. .+++|++|++++|... .+
T Consensus       407 L~Ls~N~l~------------~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~-lp~~~~~~l~~L~~L~Ls~N~l~-~i  472 (636)
T 4eco_A          407 IDFSYNEIG------------SVDGKNFDPLDPTPFKGINVSSINLSNNQISK-FPKELFSTGSPLSSINLMGNMLT-EI  472 (636)
T ss_dssp             EECCSSCTT------------TTTTCSSCTTCSSCCCCCCEEEEECCSSCCCS-CCTHHHHTTCCCSEEECCSSCCS-BC
T ss_pred             EECcCCcCC------------CcchhhhcccccccccCCCCCEEECcCCccCc-CCHHHHccCCCCCEEECCCCCCC-Cc
Confidence            777777664            22344444       55567777777776665 555443 4666777777666654 44


Q ss_pred             CC-C-C-------CCCCcCeeeecccccceeeCcccc--CCCCCCC------CCCCCCcccccCccccccccccc
Q 038150          427 PP-L-G-------KLQSLENLHIWRMESVKRVGDEFL--GIESDHH------GSSSSSSVIIAFPKLKSLSIEVL  484 (488)
Q Consensus       427 ~~-l-~-------~l~~L~~L~l~~~~~l~~~~~~~~--~~~~~~~------~~~~~~~~~~~~p~L~~L~l~~~  484 (488)
                      |. . .       .+++|+.|++++|. +..+|..+.  .......      .-.+.....+.+++|+.|.++++
T Consensus       473 ~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N  546 (636)
T 4eco_A          473 PKNSLKDENENFKNTYLLTSIDLRFNK-LTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQ  546 (636)
T ss_dssp             CSSSSEETTEECTTGGGCCEEECCSSC-CCBCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSC
T ss_pred             CHHHhccccccccccCCccEEECcCCc-CCccChhhhhccCCCcCEEECCCCCCCCcChhhhcCCCCCEEECCCC
Confidence            43 1 1       12266666666664 445554432  1110000      00011122456778888888553

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.87  E-value=1e-22  Score=211.71  Aligned_cols=277  Identities=16%  Similarity=0.112  Sum_probs=134.1

Q ss_pred             ccceeeEEEEecCCcCccccccccCcceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccCccC
Q 038150          156 EKVRHLMLIFSKAASLPISTLRVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVL  235 (488)
Q Consensus       156 ~~vr~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~l  235 (488)
                      ..++.+++..+....+|..+..+++|++|++.+| .+.. ..+..+..+++|++|++++|.+     .+         .+
T Consensus       278 ~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n-~l~~-~~~~~~~~l~~L~~L~l~~n~~-----~~---------~~  341 (606)
T 3t6q_A          278 SGLQELDLTATHLSELPSGLVGLSTLKKLVLSAN-KFEN-LCQISASNFPSLTHLSIKGNTK-----RL---------EL  341 (606)
T ss_dssp             TTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTC-CCSB-GGGGCGGGCTTCSEEECCSCSS-----CC---------BC
T ss_pred             cCCCEEeccCCccCCCChhhcccccCCEEECccC-CcCc-CchhhhhccCcCCEEECCCCCc-----cc---------cc
Confidence            3444444444444444444444455555555444 2222 2333344455555555555442     22         11


Q ss_pred             c-hhhhhhccCcEeecCCCCCcccC--chhhccccccceeeccCCCCCCCCCCCCCCcccccccCceeecCCCCCCCCcc
Q 038150          236 P-ETLCELYNLEKLDISDCFNLKEL--PEGIGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGRKA  312 (488)
Q Consensus       236 p-~~i~~L~~L~~L~l~~~~~~~~l--p~~l~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~  312 (488)
                      | ..++.+++|++|++++|......  |..++.+++|++|++++|......|..++++++|++|++.+|...+.      
T Consensus       342 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~------  415 (606)
T 3t6q_A          342 GTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVK------  415 (606)
T ss_dssp             CSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECC------
T ss_pred             chhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCc------
Confidence            1 12445555555555554422211  34455555555555555554344444555555555555555543320      


Q ss_pred             cCcccccCCCcccccccccccCCCChhhhhHhhcccCCCCCceeecccCchhhhhhhccccchHHHhhhCCCCCCCCEEE
Q 038150          313 CRLESLKNLEHLQVCGISRLGDVSDVGEAKRLELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKELE  392 (488)
Q Consensus       313 ~~~~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~  392 (488)
                      .....+..+++|+.|.+....-..    ..+..+..+++|+.|++++|.+.+..         ...+..+..+++|+.|+
T Consensus       416 ~~~~~~~~l~~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~---------~~~~~~~~~l~~L~~L~  482 (606)
T 3t6q_A          416 DAQSPFQNLHLLKVLNLSHSLLDI----SSEQLFDGLPALQHLNLQGNHFPKGN---------IQKTNSLQTLGRLEILV  482 (606)
T ss_dssp             TTCCTTTTCTTCCEEECTTCCCBT----TCTTTTTTCTTCCEEECTTCBCGGGE---------ECSSCGGGGCTTCCEEE
T ss_pred             ccchhhhCcccCCEEECCCCccCC----cCHHHHhCCCCCCEEECCCCCCCccc---------cccchhhccCCCccEEE
Confidence            011123344455555443322110    11233455566666666666543210         01113345556666666


Q ss_pred             eccccCCCCCchHHHhccCCcEEeecCCCCCCCCCC-CCCCCCcCeeeecccccceeeCccccCCCCCCCCCCCCCcccc
Q 038150          393 IEYYRGNTVFPSWMTSLTNLKSLDLSSCENCEQLPP-LGKLQSLENLHIWRMESVKRVGDEFLGIESDHHGSSSSSSVII  471 (488)
Q Consensus       393 l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~-l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  471 (488)
                      +++|.+....|..++.+++|++|++++|......|. ++.+++| .|++++|. +..++...                .+
T Consensus       483 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~-l~~~~~~~----------------~~  544 (606)
T 3t6q_A          483 LSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNH-ISIILPSL----------------LP  544 (606)
T ss_dssp             CTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSC-CCCCCGGG----------------HH
T ss_pred             CCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCc-ccccCHhh----------------cc
Confidence            666665553455556666666666666655444443 5556666 66666554 33332221                34


Q ss_pred             cCcccccccccccc
Q 038150          472 AFPKLKSLSIEVLR  485 (488)
Q Consensus       472 ~~p~L~~L~l~~~p  485 (488)
                      .+++|+.|++.++|
T Consensus       545 ~l~~L~~L~l~~N~  558 (606)
T 3t6q_A          545 ILSQQRTINLRQNP  558 (606)
T ss_dssp             HHHTSSEEECTTCC
T ss_pred             cCCCCCEEeCCCCC
Confidence            67899999998876

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.87  E-value=4.2e-22  Score=191.07  Aligned_cols=263  Identities=16%  Similarity=0.140  Sum_probs=157.7

Q ss_pred             ccceeeEEEEecCCcCc-cccccccCcceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccCcc
Q 038150          156 EKVRHLMLIFSKAASLP-ISTLRVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLV  234 (488)
Q Consensus       156 ~~vr~l~l~~~~~~~~~-~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~  234 (488)
                      ..++.++++.+....++ ..+.++++|++|++.+| .+.. ..+..|.++++|++|++++|.      +..+        
T Consensus        54 ~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~-~~~~~~~~l~~L~~L~L~~n~------l~~l--------  117 (332)
T 2ft3_A           54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNN-KISK-IHEKAFSPLRKLQKLYISKNH------LVEI--------  117 (332)
T ss_dssp             TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCE-ECGGGSTTCTTCCEEECCSSC------CCSC--------
T ss_pred             CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCC-ccCc-cCHhHhhCcCCCCEEECCCCc------CCcc--------
Confidence            45666777666665553 35666777777777776 4443 445556777777777777776      4433        


Q ss_pred             CchhhhhhccCcEeecCCCCCcccCch-hhccccccceeeccCCCCC--CCCCCCCCCcccccccCceeecCCCCCCCCc
Q 038150          235 LPETLCELYNLEKLDISDCFNLKELPE-GIGKLINVKHLLNRGTNSL--RYMPVGIGRLTGLRTLGEFHVSAGGGVDGRK  311 (488)
Q Consensus       235 lp~~i~~L~~L~~L~l~~~~~~~~lp~-~l~~L~~L~~L~l~~~~~~--~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~  311 (488)
                       |..+.  ++|++|++++|. +..+|. .++.+++|++|++++|...  ...|..++.+ +|++|++.+|.+..     .
T Consensus       118 -~~~~~--~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~-----l  187 (332)
T 2ft3_A          118 -PPNLP--SSLVELRIHDNR-IRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG-----I  187 (332)
T ss_dssp             -CSSCC--TTCCEEECCSSC-CCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-----C
T ss_pred             -Ccccc--ccCCEEECCCCc-cCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc-----c
Confidence             33332  567777777755 444443 4677777777777777643  2345556666 77777777766554     2


Q ss_pred             ccCcccccCCCcccccccccc--cCCCChhhhhHhhcccCCCCCceeecccCchhhhhhhccccchHHHhhhCCCCCCCC
Q 038150          312 ACRLESLKNLEHLQVCGISRL--GDVSDVGEAKRLELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLK  389 (488)
Q Consensus       312 ~~~~~~l~~L~~L~~L~~~~~--~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~  389 (488)
                      +..+.     ++|+.|.+...  ..+.      +..+..+++|+.|++++|.+...            .+..+..+++|+
T Consensus       188 ~~~~~-----~~L~~L~l~~n~i~~~~------~~~l~~l~~L~~L~L~~N~l~~~------------~~~~~~~l~~L~  244 (332)
T 2ft3_A          188 PKDLP-----ETLNELHLDHNKIQAIE------LEDLLRYSKLYRLGLGHNQIRMI------------ENGSLSFLPTLR  244 (332)
T ss_dssp             CSSSC-----SSCSCCBCCSSCCCCCC------TTSSTTCTTCSCCBCCSSCCCCC------------CTTGGGGCTTCC
T ss_pred             Ccccc-----CCCCEEECCCCcCCccC------HHHhcCCCCCCEEECCCCcCCcC------------ChhHhhCCCCCC
Confidence            22211     45555555432  2221      24566777888888888776422            234566777888


Q ss_pred             EEEeccccCCCCCchHHHhccCCcEEeecCCCCCCCCCC-CCC------CCCcCeeeecccccce--eeCccccCCCCCC
Q 038150          390 ELEIEYYRGNTVFPSWMTSLTNLKSLDLSSCENCEQLPP-LGK------LQSLENLHIWRMESVK--RVGDEFLGIESDH  460 (488)
Q Consensus       390 ~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~-l~~------l~~L~~L~l~~~~~l~--~~~~~~~~~~~~~  460 (488)
                      .|++++|.+.. +|.++..+++|++|++++|......+. +..      .++|+.|++.+|+ +.  .++...       
T Consensus       245 ~L~L~~N~l~~-lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~-~~~~~~~~~~-------  315 (332)
T 2ft3_A          245 ELHLDNNKLSR-VPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNP-VPYWEVQPAT-------  315 (332)
T ss_dssp             EEECCSSCCCB-CCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSS-SCGGGSCGGG-------
T ss_pred             EEECCCCcCee-cChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCc-ccccccCccc-------
Confidence            88888887776 777777888888888888775433222 222      4667888887776 22  121111       


Q ss_pred             CCCCCCCcccccCcccccccccccc
Q 038150          461 HGSSSSSSVIIAFPKLKSLSIEVLR  485 (488)
Q Consensus       461 ~~~~~~~~~~~~~p~L~~L~l~~~p  485 (488)
                               ...+++|+.|.+.++.
T Consensus       316 ---------~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          316 ---------FRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             ---------GTTBCCSTTEEC----
T ss_pred             ---------ccccchhhhhhccccc
Confidence                     3357788888887764

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.86  E-value=6.9e-22  Score=189.40  Aligned_cols=243  Identities=14%  Similarity=0.073  Sum_probs=124.4

Q ss_pred             ccceeeEEEEecCCcCcc-ccccccCcceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccCcc
Q 038150          156 EKVRHLMLIFSKAASLPI-STLRVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLV  234 (488)
Q Consensus       156 ~~vr~l~l~~~~~~~~~~-~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~  234 (488)
                      ..++.+++..+....++. .+.++++|++|++.+| .+.. ..|..|..+++|++|++++|.      +..+|       
T Consensus        52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~-~~~~~~~~l~~L~~L~Ls~n~------l~~l~-------  116 (330)
T 1xku_A           52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINN-KISK-ISPGAFAPLVKLERLYLSKNQ------LKELP-------  116 (330)
T ss_dssp             TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS-CCCC-BCTTTTTTCTTCCEEECCSSC------CSBCC-------
T ss_pred             CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCC-cCCe-eCHHHhcCCCCCCEEECCCCc------CCccC-------
Confidence            455566666655555543 4556666666666665 3333 334455666666666666665      33222       


Q ss_pred             CchhhhhhccCcEeecCCCCCcccCchhhccccccceeeccCCCCCC--CCCCCCCCcccccccCceeecCCCCCCCCcc
Q 038150          235 LPETLCELYNLEKLDISDCFNLKELPEGIGKLINVKHLLNRGTNSLR--YMPVGIGRLTGLRTLGEFHVSAGGGVDGRKA  312 (488)
Q Consensus       235 lp~~i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~L~l~~~~~~~--~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~  312 (488)
                        ..+.  ++|++|++++|......+..+.++++|++|++++|....  ..+..++++++|++|++.+|.+..     .+
T Consensus       117 --~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-----l~  187 (330)
T 1xku_A          117 --EKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-----IP  187 (330)
T ss_dssp             --SSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-----CC
T ss_pred             --hhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc-----CC
Confidence              2222  456666666654322233345666666666666665321  334455666666666666555443     12


Q ss_pred             cCcccccCCCcccccccccccCCCChhhhhHhhcccCCCCCceeecccCchhhhhhhccccchHHHhhhCCCCCCCCEEE
Q 038150          313 CRLESLKNLEHLQVCGISRLGDVSDVGEAKRLELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKELE  392 (488)
Q Consensus       313 ~~~~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~  392 (488)
                      ..+     .++|+.|.+....- .   ...+..+..+++|+.|++++|.+...            .+..+..+++|+.|+
T Consensus       188 ~~~-----~~~L~~L~l~~n~l-~---~~~~~~~~~l~~L~~L~Ls~n~l~~~------------~~~~~~~l~~L~~L~  246 (330)
T 1xku_A          188 QGL-----PPSLTELHLDGNKI-T---KVDAASLKGLNNLAKLGLSFNSISAV------------DNGSLANTPHLRELH  246 (330)
T ss_dssp             SSC-----CTTCSEEECTTSCC-C---EECTGGGTTCTTCCEEECCSSCCCEE------------CTTTGGGSTTCCEEE
T ss_pred             ccc-----cccCCEEECCCCcC-C---ccCHHHhcCCCCCCEEECCCCcCcee------------ChhhccCCCCCCEEE
Confidence            111     13444444432211 0   01123455566666666666655321            123445556666666


Q ss_pred             eccccCCCCCchHHHhccCCcEEeecCCCCCCCCCC-CC------CCCCcCeeeecccc
Q 038150          393 IEYYRGNTVFPSWMTSLTNLKSLDLSSCENCEQLPP-LG------KLQSLENLHIWRME  444 (488)
Q Consensus       393 l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~-l~------~l~~L~~L~l~~~~  444 (488)
                      +++|.+.. +|.++..+++|++|++++|......+. +.      ..+.|+.|++.+++
T Consensus       247 L~~N~l~~-lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~  304 (330)
T 1xku_A          247 LNNNKLVK-VPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNP  304 (330)
T ss_dssp             CCSSCCSS-CCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSS
T ss_pred             CCCCcCcc-CChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCc
Confidence            66666654 666666666666666666654332211 21      23556666666655

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.86  E-value=4.2e-22  Score=207.14  Aligned_cols=254  Identities=13%  Similarity=0.041  Sum_probs=168.4

Q ss_pred             ccccceeeEEEEecCCcC-ccccccccCcceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccC
Q 038150          154 LDEKVRHLMLIFSKAASL-PISTLRVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEK  232 (488)
Q Consensus       154 ~~~~vr~l~l~~~~~~~~-~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~  232 (488)
                      ....++++++..+....+ |..+.++++|++|++++| .+.. ..|..|.++++|++|+|++|.+     ..        
T Consensus        31 l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~-~~~~~~~~l~~L~~L~Ls~n~l-----~~--------   95 (606)
T 3t6q_A           31 LPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRC-QIYW-IHEDTFQSQHRLDTLVLTANPL-----IF--------   95 (606)
T ss_dssp             SCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTC-CCCE-ECTTTTTTCTTCCEEECTTCCC-----SE--------
T ss_pred             CCCcCcEEEccCCccCcCChhHhccCccceEEECCCC-ccce-eChhhccCccccCeeeCCCCcc-----cc--------
Confidence            345788898888888766 557888999999999987 5554 5667788999999999999984     33        


Q ss_pred             ccCchhhhhhccCcEeecCCCCCcccC-chhhccccccceeeccCCCCCCCCCCCCCCcccccccCceeecCCCCCCCCc
Q 038150          233 LVLPETLCELYNLEKLDISDCFNLKEL-PEGIGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGRK  311 (488)
Q Consensus       233 l~lp~~i~~L~~L~~L~l~~~~~~~~l-p~~l~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~  311 (488)
                       ..|..++++++|++|++++|. +..+ |..++++++|++|++++|.+...-+..+..+++|++|++.+|.+...     
T Consensus        96 -~~~~~~~~l~~L~~L~L~~n~-i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-----  168 (606)
T 3t6q_A           96 -MAETALSGPKALKHLFFIQTG-ISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYL-----  168 (606)
T ss_dssp             -ECTTTTSSCTTCCEEECTTSC-CSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEE-----
T ss_pred             -cChhhhcccccccEeeccccC-cccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCccccc-----
Confidence             335567777788888888765 4443 55677777888888877774432223334477777777777655431     


Q ss_pred             ccCcccccCCCccc--ccccccc--cCCC---------------------------------------------------
Q 038150          312 ACRLESLKNLEHLQ--VCGISRL--GDVS---------------------------------------------------  336 (488)
Q Consensus       312 ~~~~~~l~~L~~L~--~L~~~~~--~~~~---------------------------------------------------  336 (488)
                        ....+..+++|+  .+.+...  .++.                                                   
T Consensus       169 --~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~  246 (606)
T 3t6q_A          169 --SKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPA  246 (606)
T ss_dssp             --CHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGG
T ss_pred             --ChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChh
Confidence              011122222222  1111110  0000                                                   


Q ss_pred             ------------------ChhhhhHhhcccCCCCCceeecccCchhhhhhhccccchHHHhhhCCCCCCCCEEEeccccC
Q 038150          337 ------------------DVGEAKRLELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKELEIEYYRG  398 (488)
Q Consensus       337 ------------------~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  398 (488)
                                        .........+..+++|+.|++++|.+             ..+|..+..+++|++|++++|.+
T Consensus       247 ~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l-------------~~lp~~l~~l~~L~~L~l~~n~l  313 (606)
T 3t6q_A          247 VFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHL-------------SELPSGLVGLSTLKKLVLSANKF  313 (606)
T ss_dssp             GGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCC-------------SCCCSSCCSCTTCCEEECTTCCC
T ss_pred             HhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCcc-------------CCCChhhcccccCCEEECccCCc
Confidence                              00000112356677888888888876             34567788888899999988888


Q ss_pred             CCCCchHHHhccCCcEEeecCCCCCCCCCC--CCCCCCcCeeeecccc
Q 038150          399 NTVFPSWMTSLTNLKSLDLSSCENCEQLPP--LGKLQSLENLHIWRME  444 (488)
Q Consensus       399 ~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~--l~~l~~L~~L~l~~~~  444 (488)
                      ....|..+..+++|++|++++|.....++.  ++.+++|++|++++|.
T Consensus       314 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~  361 (606)
T 3t6q_A          314 ENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDD  361 (606)
T ss_dssp             SBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSC
T ss_pred             CcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCc
Confidence            774566788888888888888877666654  7788888888888776

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.86  E-value=5.7e-22  Score=198.74  Aligned_cols=147  Identities=16%  Similarity=0.060  Sum_probs=110.3

Q ss_pred             eEEEEecCCcCccccccccCcceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccCccCchhhh
Q 038150          161 LMLIFSKAASLPISTLRVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVLPETLC  240 (488)
Q Consensus       161 l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~lp~~i~  240 (488)
                      +.........+|. +  .++|++|++++| .+.. ..+..|.++++|++|++++|.+     .+.+        .|..++
T Consensus        15 ~~c~~~~l~~lp~-l--~~~l~~L~Ls~n-~i~~-~~~~~~~~l~~L~~L~L~~n~~-----~~~i--------~~~~~~   76 (455)
T 3v47_A           15 AICINRGLHQVPE-L--PAHVNYVDLSLN-SIAE-LNETSFSRLQDLQFLKVEQQTP-----GLVI--------RNNTFR   76 (455)
T ss_dssp             EECCSSCCSSCCC-C--CTTCCEEECCSS-CCCE-ECTTTTSSCTTCCEEECCCCST-----TCEE--------CTTTTT
T ss_pred             cCcCCCCcccCCC-C--CCccCEEEecCC-ccCc-CChhHhccCccccEEECcCCcc-----cceE--------Cccccc
Confidence            3334444566775 2  389999999998 5655 5577799999999999999984     3322        245688


Q ss_pred             hhccCcEeecCCCCCcccCchhhccccccceeeccCCCCCCCCCCC--CCCcccccccCceeecCCCCCCCCcccCcccc
Q 038150          241 ELYNLEKLDISDCFNLKELPEGIGKLINVKHLLNRGTNSLRYMPVG--IGRLTGLRTLGEFHVSAGGGVDGRKACRLESL  318 (488)
Q Consensus       241 ~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~L~l~~~~~~~~lp~~--i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l  318 (488)
                      ++++|++|++++|......|..++++++|++|++++|.+....|..  ++++++|++|++.+|.+.+..    +.  ..+
T Consensus        77 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~----~~--~~~  150 (455)
T 3v47_A           77 GLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQ----PA--SFF  150 (455)
T ss_dssp             TCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCC----CC--GGG
T ss_pred             ccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccC----cc--ccc
Confidence            9999999999998755556889999999999999999865545544  899999999999999876521    11  125


Q ss_pred             cCCCccccccccc
Q 038150          319 KNLEHLQVCGISR  331 (488)
Q Consensus       319 ~~L~~L~~L~~~~  331 (488)
                      .++++|+.|++..
T Consensus       151 ~~l~~L~~L~L~~  163 (455)
T 3v47_A          151 LNMRRFHVLDLTF  163 (455)
T ss_dssp             GGCTTCCEEECTT
T ss_pred             CCCCcccEEeCCC
Confidence            5667777766643

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.86  E-value=1.7e-21  Score=206.85  Aligned_cols=292  Identities=13%  Similarity=0.116  Sum_probs=190.3

Q ss_pred             CCcccccccceeeEEEEecCCc------------------Cccccc--cccCcceecccccchhhhhhHHHHHhcCCccc
Q 038150          149 NATNALDEKVRHLMLIFSKAAS------------------LPISTL--RVKRMRTLLINDHSLLNAAILEELFRELTSLR  208 (488)
Q Consensus       149 ~~t~~~~~~vr~l~l~~~~~~~------------------~~~~~~--~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr  208 (488)
                      .........++.++++.+....                  +|..++  ++++|++|++.+|. +.+ .+|..|.++++|+
T Consensus       441 P~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~-l~~-~iP~~l~~L~~L~  518 (876)
T 4ecn_A          441 SKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCP-NMT-QLPDFLYDLPELQ  518 (876)
T ss_dssp             CGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCT-TCC-SCCGGGGGCSSCC
T ss_pred             hHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCC-CCc-cChHHHhCCCCCC
Confidence            3334556788899999888866                  888877  89999999999884 333 5677789999999


Q ss_pred             eeecCCCc-ccccccCCcccccccCccCchhhhhhc-------cCcEeecCCCCCcccCch--hhccccccceeeccCCC
Q 038150          209 ALDFGGSY-HSTRLLTPEVPRNIEKLVLPETLCELY-------NLEKLDISDCFNLKELPE--GIGKLINVKHLLNRGTN  278 (488)
Q Consensus       209 ~L~Ls~~~-~~~~~~~~~lp~~i~~l~lp~~i~~L~-------~L~~L~l~~~~~~~~lp~--~l~~L~~L~~L~l~~~~  278 (488)
                      +|+|++|. +     .+.        .+|..++++.       +|++|++++|. +..+|.  .++++++|++|++++|.
T Consensus       519 ~L~Ls~N~~l-----sg~--------~iP~~i~~L~~~~~~l~~L~~L~Ls~N~-L~~ip~~~~l~~L~~L~~L~Ls~N~  584 (876)
T 4ecn_A          519 SLNIACNRGI-----SAA--------QLKADWTRLADDEDTGPKIQIFYMGYNN-LEEFPASASLQKMVKLGLLDCVHNK  584 (876)
T ss_dssp             EEECTTCTTS-----CHH--------HHHHHHHHHHHCTTTTTTCCEEECCSSC-CCBCCCHHHHTTCTTCCEEECTTSC
T ss_pred             EEECcCCCCc-----ccc--------cchHHHHhhhhcccccCCccEEEeeCCc-CCccCChhhhhcCCCCCEEECCCCC
Confidence            99999997 4     320        2566666666       99999999977 558998  89999999999999998


Q ss_pred             CCCCCCCCCCCcccccccCceeecCCCCCCCCcccCcccccCCCc-ccccccccc--cCCCChhhhhHhhcccC--CCCC
Q 038150          279 SLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGRKACRLESLKNLEH-LQVCGISRL--GDVSDVGEAKRLELDKK--KYLS  353 (488)
Q Consensus       279 ~~~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~-L~~L~~~~~--~~~~~~~~~~~~~l~~l--~~L~  353 (488)
                      +. .+| .++++++|++|++.+|.+..     .+..   +.++++ |+.|.+...  ..++       ..+..+  ++|+
T Consensus       585 l~-~lp-~~~~L~~L~~L~Ls~N~l~~-----lp~~---l~~l~~~L~~L~Ls~N~L~~lp-------~~~~~~~~~~L~  647 (876)
T 4ecn_A          585 VR-HLE-AFGTNVKLTDLKLDYNQIEE-----IPED---FCAFTDQVEGLGFSHNKLKYIP-------NIFNAKSVYVMG  647 (876)
T ss_dssp             CC-BCC-CCCTTSEESEEECCSSCCSC-----CCTT---SCEECTTCCEEECCSSCCCSCC-------SCCCTTCSSCEE
T ss_pred             cc-cch-hhcCCCcceEEECcCCcccc-----chHH---HhhccccCCEEECcCCCCCcCc-------hhhhccccCCCC
Confidence            55 888 89999999999999887763     3433   445555 666666443  2222       333443  3488


Q ss_pred             ceeecccCchhhhhhhccccchHHHhhhCC--CCCCCCEEEeccccCCCCCchHHH-hccCCcEEeecCCCCCCCCCC-C
Q 038150          354 SLTLWFDKEEEEEGERRKNEDNQLLLEALR--PPLNLKELEIEYYRGNTVFPSWMT-SLTNLKSLDLSSCENCEQLPP-L  429 (488)
Q Consensus       354 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~lp~~~~-~l~~L~~L~l~~~~~~~~~~~-l  429 (488)
                      .|++++|.+.+..+         .++..+.  .+++|+.|++++|.+.. +|.++. .+++|+.|++++|... .+|. +
T Consensus       648 ~L~Ls~N~l~g~ip---------~l~~~l~~~~~~~L~~L~Ls~N~L~~-lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~  716 (876)
T 4ecn_A          648 SVDFSYNKIGSEGR---------NISCSMDDYKGINASTVTLSYNEIQK-FPTELFATGSPISTIILSNNLMT-SIPENS  716 (876)
T ss_dssp             EEECCSSCTTTTSS---------SCSSCTTTCCCCCEEEEECCSSCCCS-CCHHHHHTTCCCSEEECCSCCCS-CCCTTS
T ss_pred             EEECcCCcCCCccc---------cchhhhccccCCCcCEEEccCCcCCc-cCHHHHccCCCCCEEECCCCcCC-ccChHH
Confidence            88888887753311         1111222  23467777777776665 666554 5667777777766544 4443 2


Q ss_pred             C--------CCCCcCeeeecccccceeeCcccc--CCCCCCC------CCCCCCcccccCcccccccccccc
Q 038150          430 G--------KLQSLENLHIWRMESVKRVGDEFL--GIESDHH------GSSSSSSVIIAFPKLKSLSIEVLR  485 (488)
Q Consensus       430 ~--------~l~~L~~L~l~~~~~l~~~~~~~~--~~~~~~~------~~~~~~~~~~~~p~L~~L~l~~~p  485 (488)
                      .        ++++|+.|+|++|. +..+|..+.  .......      .-.+.....+.+++|+.|.+++++
T Consensus       717 ~~~~~~~l~nl~~L~~L~Ls~N~-L~~lp~~l~~~~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~  787 (876)
T 4ecn_A          717 LKPKDGNYKNTYLLTTIDLRFNK-LTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQR  787 (876)
T ss_dssp             SSCTTSCCTTGGGCCEEECCSSC-CCCCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCTTCCEEECCCCB
T ss_pred             hccccccccccCCccEEECCCCC-CccchHHhhhccCCCcCEEEeCCCCCCccchhhhcCCCCCEEECCCCC
Confidence            1        22367777776664 445554432  1110000      000111224567788888887644

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.86  E-value=2.4e-21  Score=208.57  Aligned_cols=266  Identities=19%  Similarity=0.172  Sum_probs=168.7

Q ss_pred             ccccceeeEEEEecCCcC-ccccccccCcceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccC
Q 038150          154 LDEKVRHLMLIFSKAASL-PISTLRVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEK  232 (488)
Q Consensus       154 ~~~~vr~l~l~~~~~~~~-~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~  232 (488)
                      ....+++++++.+....+ +..+.++++|++|++++|..... ..|..|.++++|++|+|++|.+     ..        
T Consensus        22 lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~-i~~~~f~~L~~L~~L~Ls~N~l-----~~--------   87 (844)
T 3j0a_A           22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLT-IDKEAFRNLPNLRILDLGSSKI-----YF--------   87 (844)
T ss_dssp             SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCE-ECTTTTSSCTTCCEEECTTCCC-----CE--------
T ss_pred             CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccc-cCHHHhcCCCCCCEEECCCCcC-----cc--------
Confidence            567889999999888665 56788999999999999844433 3466789999999999999984     33        


Q ss_pred             ccCchhhhhhccCcEeecCCCCCcccCchh--hccccccceeeccCCCCCCCCC-CCCCCcccccccCceeecCCCCCCC
Q 038150          233 LVLPETLCELYNLEKLDISDCFNLKELPEG--IGKLINVKHLLNRGTNSLRYMP-VGIGRLTGLRTLGEFHVSAGGGVDG  309 (488)
Q Consensus       233 l~lp~~i~~L~~L~~L~l~~~~~~~~lp~~--l~~L~~L~~L~l~~~~~~~~lp-~~i~~L~~L~~L~l~~~~~~~~~~~  309 (488)
                       ..|..++++++|++|++++|.....+|..  ++++++|++|++++|.+....| ..++++++|++|++.+|.+.+..  
T Consensus        88 -~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~--  164 (844)
T 3j0a_A           88 -LHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVC--  164 (844)
T ss_dssp             -ECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCC--
T ss_pred             -cCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeC--
Confidence             33566677777777777777644445554  6777777777777777544333 35777777777777776654321  


Q ss_pred             CcccCcccc-----------------------cCCC------cccccccccccCCCChhhhh------------------
Q 038150          310 RKACRLESL-----------------------KNLE------HLQVCGISRLGDVSDVGEAK------------------  342 (488)
Q Consensus       310 ~~~~~~~~l-----------------------~~L~------~L~~L~~~~~~~~~~~~~~~------------------  342 (488)
                        +..+..+                       ..+.      .|+.|.++...-.......+                  
T Consensus       165 --~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~  242 (844)
T 3j0a_A          165 --EHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHI  242 (844)
T ss_dssp             --SGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSC
T ss_pred             --HHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccc
Confidence              1111111                       1111      14444443221000000000                  


Q ss_pred             --------------Hhhccc--CCCCCceeecccCchhhhhhhccccchHHHhhhCCCCCCCCEEEeccccCCCCCchHH
Q 038150          343 --------------RLELDK--KKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKELEIEYYRGNTVFPSWM  406 (488)
Q Consensus       343 --------------~~~l~~--l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~lp~~~  406 (488)
                                    ...+..  .++|+.|++++|.+.            ...+..+..+++|+.|++++|.+....|..+
T Consensus       243 ~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~------------~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~  310 (844)
T 3j0a_A          243 MGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVF------------SLNSRVFETLKDLKVLNLAYNKINKIADEAF  310 (844)
T ss_dssp             CBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCC------------EECSCCSSSCCCCCEEEEESCCCCEECTTTT
T ss_pred             ccccccccccCCCChhhhhccccCCccEEECCCCccc------------ccChhhhhcCCCCCEEECCCCcCCCCChHHh
Confidence                          011111  245666777666653            2234556777888888888887776456677


Q ss_pred             HhccCCcEEeecCCCCCCCCCC-CCCCCCcCeeeecccccceeeCc
Q 038150          407 TSLTNLKSLDLSSCENCEQLPP-LGKLQSLENLHIWRMESVKRVGD  451 (488)
Q Consensus       407 ~~l~~L~~L~l~~~~~~~~~~~-l~~l~~L~~L~l~~~~~l~~~~~  451 (488)
                      ..+++|++|++++|......+. ++.+++|++|++++|. +..++.
T Consensus       311 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~  355 (844)
T 3j0a_A          311 YGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNH-IAIIQD  355 (844)
T ss_dssp             TTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCC-CCCCCS
T ss_pred             cCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCC-CCccCh
Confidence            7788888888888876555454 7778888888887775 555543

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.86  E-value=3.3e-21  Score=184.78  Aligned_cols=268  Identities=17%  Similarity=0.156  Sum_probs=202.9

Q ss_pred             cceeeEEEEecCCcCccccccccCcceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccCccCc
Q 038150          157 KVRHLMLIFSKAASLPISTLRVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVLP  236 (488)
Q Consensus       157 ~vr~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~lp  236 (488)
                      .++.+.+..+....+|..+  .+++++|++.+| .+.. ..+..|.++++|++|++++|.+      ..        ..|
T Consensus        34 ~l~~l~~~~~~l~~ip~~~--~~~l~~L~l~~n-~i~~-~~~~~~~~l~~L~~L~L~~n~l------~~--------~~~   95 (332)
T 2ft3_A           34 HLRVVQCSDLGLKAVPKEI--SPDTTLLDLQNN-DISE-LRKDDFKGLQHLYALVLVNNKI------SK--------IHE   95 (332)
T ss_dssp             ETTEEECCSSCCSSCCSCC--CTTCCEEECCSS-CCCE-ECTTTTTTCTTCCEEECCSSCC------CE--------ECG
T ss_pred             cCCEEECCCCCccccCCCC--CCCCeEEECCCC-cCCc-cCHhHhhCCCCCcEEECCCCcc------Cc--------cCH
Confidence            5677888877778888765  479999999998 5554 5566789999999999999984      42        346


Q ss_pred             hhhhhhccCcEeecCCCCCcccCchhhccccccceeeccCCCCCCCCC-CCCCCcccccccCceeecCCCCCCCCcccCc
Q 038150          237 ETLCELYNLEKLDISDCFNLKELPEGIGKLINVKHLLNRGTNSLRYMP-VGIGRLTGLRTLGEFHVSAGGGVDGRKACRL  315 (488)
Q Consensus       237 ~~i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~L~l~~~~~~~~lp-~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~  315 (488)
                      ..++++++|++|++++|. +..+|..+.  ++|++|++++|.+. .+| ..++++++|++|++.+|....     .....
T Consensus        96 ~~~~~l~~L~~L~L~~n~-l~~l~~~~~--~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~l~~n~l~~-----~~~~~  166 (332)
T 2ft3_A           96 KAFSPLRKLQKLYISKNH-LVEIPPNLP--SSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLEN-----SGFEP  166 (332)
T ss_dssp             GGSTTCTTCCEEECCSSC-CCSCCSSCC--TTCCEEECCSSCCC-CCCSGGGSSCSSCCEEECCSCCCBG-----GGSCT
T ss_pred             hHhhCcCCCCEEECCCCc-CCccCcccc--ccCCEEECCCCccC-ccCHhHhCCCccCCEEECCCCcccc-----CCCCc
Confidence            788899999999999975 678887776  89999999999854 455 458999999999999887643     11223


Q ss_pred             ccccCCCcccccccccc--cCCCChhhhhHhhcccCCCCCceeecccCchhhhhhhccccchHHHhhhCCCCCCCCEEEe
Q 038150          316 ESLKNLEHLQVCGISRL--GDVSDVGEAKRLELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKELEI  393 (488)
Q Consensus       316 ~~l~~L~~L~~L~~~~~--~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l  393 (488)
                      ..+..+ +|+.|.+...  ..++.       .+  .++|+.|++++|.+..            ..+..+..+++|+.|++
T Consensus       167 ~~~~~l-~L~~L~l~~n~l~~l~~-------~~--~~~L~~L~l~~n~i~~------------~~~~~l~~l~~L~~L~L  224 (332)
T 2ft3_A          167 GAFDGL-KLNYLRISEAKLTGIPK-------DL--PETLNELHLDHNKIQA------------IELEDLLRYSKLYRLGL  224 (332)
T ss_dssp             TSSCSC-CCSCCBCCSSBCSSCCS-------SS--CSSCSCCBCCSSCCCC------------CCTTSSTTCTTCSCCBC
T ss_pred             ccccCC-ccCEEECcCCCCCccCc-------cc--cCCCCEEECCCCcCCc------------cCHHHhcCCCCCCEEEC
Confidence            344444 6777766443  33332       12  2789999999998752            23467888999999999


Q ss_pred             ccccCCCCCchHHHhccCCcEEeecCCCCCCCCCC-CCCCCCcCeeeecccccceeeCccccCCCCCCCCCCCCCccccc
Q 038150          394 EYYRGNTVFPSWMTSLTNLKSLDLSSCENCEQLPP-LGKLQSLENLHIWRMESVKRVGDEFLGIESDHHGSSSSSSVIIA  472 (488)
Q Consensus       394 ~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~-l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  472 (488)
                      ++|.+....|.++..+++|++|++++|... .+|. ++.+++|++|++++|. ++.++...+...          .....
T Consensus       225 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~----------~~~~~  292 (332)
T 2ft3_A          225 GHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNN-ITKVGVNDFCPV----------GFGVK  292 (332)
T ss_dssp             CSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSC-CCBCCTTSSSCS----------SCCSS
T ss_pred             CCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCC-CCccChhHcccc----------ccccc
Confidence            999998855668999999999999999865 6776 8899999999999987 777776544321          00123


Q ss_pred             Ccccccccccccc
Q 038150          473 FPKLKSLSIEVLR  485 (488)
Q Consensus       473 ~p~L~~L~l~~~p  485 (488)
                      +++|+.|.+.++|
T Consensus       293 ~~~l~~L~l~~N~  305 (332)
T 2ft3_A          293 RAYYNGISLFNNP  305 (332)
T ss_dssp             SCCBSEEECCSSS
T ss_pred             cccccceEeecCc
Confidence            6777777777665

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.85  E-value=9.5e-22  Score=200.59  Aligned_cols=113  Identities=14%  Similarity=0.164  Sum_probs=72.9

Q ss_pred             ccceeeEEEEecCCcCc-cccccccCcceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCccccc-ccCc
Q 038150          156 EKVRHLMLIFSKAASLP-ISTLRVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRN-IEKL  233 (488)
Q Consensus       156 ~~vr~l~l~~~~~~~~~-~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~-i~~l  233 (488)
                      ..+++++++.+....++ ..+..+++|++|++++| .+.. ..|..|.++++|++|+|++|.      +..+|.. +.+|
T Consensus        21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~-~~~~~~~~l~~L~~L~Ls~N~------l~~lp~~~l~~L   92 (520)
T 2z7x_B           21 QKTTILNISQNYISELWTSDILSLSKLRILIISHN-RIQY-LDISVFKFNQELEYLDLSHNK------LVKISCHPTVNL   92 (520)
T ss_dssp             TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSS-CCCE-EEGGGGTTCTTCCEEECCSSC------CCEEECCCCCCC
T ss_pred             ccccEEECCCCcccccChhhccccccccEEecCCC-ccCC-cChHHhhcccCCCEEecCCCc------eeecCccccCCc
Confidence            67888888888887665 46788888999999887 5554 556678888889999998888      5555542 1111


Q ss_pred             -------------cCchhhhhhccCcEeecCCCCCcccCchhhcccccc--ceeeccCCCC
Q 038150          234 -------------VLPETLCELYNLEKLDISDCFNLKELPEGIGKLINV--KHLLNRGTNS  279 (488)
Q Consensus       234 -------------~lp~~i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L--~~L~l~~~~~  279 (488)
                                   .+|..++++++|++|++++|.. ..  ..+..+++|  ++|++++|..
T Consensus        93 ~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l-~~--~~~~~l~~L~L~~L~l~~n~l  150 (520)
T 2z7x_B           93 KHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHL-EK--SSVLPIAHLNISKVLLVLGET  150 (520)
T ss_dssp             SEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSC-CG--GGGGGGTTSCEEEEEEEECTT
T ss_pred             cEEeccCCccccccchhhhccCCcceEEEecCccc-ch--hhccccccceeeEEEeecccc
Confidence                         2455666666666666666542 21  234444444  5555555443

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.85  E-value=3.9e-21  Score=184.13  Aligned_cols=249  Identities=16%  Similarity=0.180  Sum_probs=193.5

Q ss_pred             cceeeEEEEecCCcCccccccccCcceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccCccCc
Q 038150          157 KVRHLMLIFSKAASLPISTLRVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVLP  236 (488)
Q Consensus       157 ~vr~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~lp  236 (488)
                      .++.+.+..+....+|..+  .+++++|++++| .+.. ..+..|.++++|++|++++|.+      ..        ..|
T Consensus        32 ~l~~l~~~~~~l~~lp~~~--~~~l~~L~L~~n-~i~~-~~~~~~~~l~~L~~L~L~~n~l------~~--------~~~   93 (330)
T 1xku_A           32 HLRVVQCSDLGLEKVPKDL--PPDTALLDLQNN-KITE-IKDGDFKNLKNLHTLILINNKI------SK--------ISP   93 (330)
T ss_dssp             ETTEEECTTSCCCSCCCSC--CTTCCEEECCSS-CCCC-BCTTTTTTCTTCCEEECCSSCC------CC--------BCT
T ss_pred             CCeEEEecCCCccccCccC--CCCCeEEECCCC-cCCE-eChhhhccCCCCCEEECCCCcC------Ce--------eCH
Confidence            5566766666667777654  379999999998 5654 5555689999999999999984      32        346


Q ss_pred             hhhhhhccCcEeecCCCCCcccCchhhccccccceeeccCCCCCCCCCCCCCCcccccccCceeecCCCCCCCCcccCcc
Q 038150          237 ETLCELYNLEKLDISDCFNLKELPEGIGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGRKACRLE  316 (488)
Q Consensus       237 ~~i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~  316 (488)
                      ..++.+++|++|++++|. +..+|..+.  ++|++|++++|.+....+..++++++|++|++.+|....     ......
T Consensus        94 ~~~~~l~~L~~L~Ls~n~-l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-----~~~~~~  165 (330)
T 1xku_A           94 GAFAPLVKLERLYLSKNQ-LKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKS-----SGIENG  165 (330)
T ss_dssp             TTTTTCTTCCEEECCSSC-CSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCG-----GGBCTT
T ss_pred             HHhcCCCCCCEEECCCCc-CCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCc-----cCcChh
Confidence            788899999999999976 778887765  799999999998554444558999999999999887653     123345


Q ss_pred             cccCCCcccccccccc--cCCCChhhhhHhhcccCCCCCceeecccCchhhhhhhccccchHHHhhhCCCCCCCCEEEec
Q 038150          317 SLKNLEHLQVCGISRL--GDVSDVGEAKRLELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKELEIE  394 (488)
Q Consensus       317 ~l~~L~~L~~L~~~~~--~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~  394 (488)
                      .+.++++|+.|.+...  ..++.       .+  .++|+.|++++|.+..            ..+..+..+++|+.|+++
T Consensus       166 ~~~~l~~L~~L~l~~n~l~~l~~-------~~--~~~L~~L~l~~n~l~~------------~~~~~~~~l~~L~~L~Ls  224 (330)
T 1xku_A          166 AFQGMKKLSYIRIADTNITTIPQ-------GL--PPSLTELHLDGNKITK------------VDAASLKGLNNLAKLGLS  224 (330)
T ss_dssp             GGGGCTTCCEEECCSSCCCSCCS-------SC--CTTCSEEECTTSCCCE------------ECTGGGTTCTTCCEEECC
T ss_pred             hccCCCCcCEEECCCCccccCCc-------cc--cccCCEEECCCCcCCc------------cCHHHhcCCCCCCEEECC
Confidence            5677888888777543  33331       11  2789999999998752            235678899999999999


Q ss_pred             cccCCCCCchHHHhccCCcEEeecCCCCCCCCCC-CCCCCCcCeeeecccccceeeCcccc
Q 038150          395 YYRGNTVFPSWMTSLTNLKSLDLSSCENCEQLPP-LGKLQSLENLHIWRMESVKRVGDEFL  454 (488)
Q Consensus       395 ~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~-l~~l~~L~~L~l~~~~~l~~~~~~~~  454 (488)
                      +|.+....+.++..+++|++|++++|... .+|. +..+++|++|++++|. ++.++...+
T Consensus       225 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~-i~~~~~~~f  283 (330)
T 1xku_A          225 FNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNN-ISAIGSNDF  283 (330)
T ss_dssp             SSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSC-CCCCCTTSS
T ss_pred             CCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCc-CCccChhhc
Confidence            99998845668899999999999999865 6665 8999999999999987 777776544

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.85  E-value=1.3e-20  Score=189.38  Aligned_cols=242  Identities=19%  Similarity=0.247  Sum_probs=121.0

Q ss_pred             ccccceeeEEEEecCCcCccccccccCcceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccCc
Q 038150          154 LDEKVRHLMLIFSKAASLPISTLRVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKL  233 (488)
Q Consensus       154 ~~~~vr~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l  233 (488)
                      ....++.+++..+....++. +..+++|++|++.+| .+.. ..+  +.++++|++|++++|.      +..+|. +.++
T Consensus        66 ~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n-~l~~-~~~--~~~l~~L~~L~L~~n~------l~~~~~-~~~l  133 (466)
T 1o6v_A           66 YLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNN-QIAD-ITP--LANLTNLTGLTLFNNQ------ITDIDP-LKNL  133 (466)
T ss_dssp             GCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCC-CGG--GTTCTTCCEEECCSSC------CCCCGG-GTTC
T ss_pred             hhcCCCEEECCCCccCCchh-hhccccCCEEECCCC-cccc-Chh--hcCCCCCCEEECCCCC------CCCChH-HcCC
Confidence            34566677777666666654 666677777777665 3332 222  5666666666666666      333321 1111


Q ss_pred             --------------cCc--------------------hhhhhhccCcEeecCCCCCcccCchhhccccccceeeccCCCC
Q 038150          234 --------------VLP--------------------ETLCELYNLEKLDISDCFNLKELPEGIGKLINVKHLLNRGTNS  279 (488)
Q Consensus       234 --------------~lp--------------------~~i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~L~l~~~~~  279 (488)
                                    .+|                    ..++++++|++|++++|. +..++ .+..+++|++|++++|..
T Consensus       134 ~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~-~l~~l~~L~~L~l~~n~l  211 (466)
T 1o6v_A          134 TNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNK-VSDIS-VLAKLTNLESLIATNNQI  211 (466)
T ss_dssp             TTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSC-CCCCG-GGGGCTTCSEEECCSSCC
T ss_pred             CCCCEEECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCc-CCCCh-hhccCCCCCEEEecCCcc
Confidence                          111                    124455555555665544 33333 355556666666665553


Q ss_pred             CCCCCCCCCCcccccccCceeecCCCCCCCCcccCcccccCCCcccccccccccCCCChhhhhHhhcccCCCCCceeecc
Q 038150          280 LRYMPVGIGRLTGLRTLGEFHVSAGGGVDGRKACRLESLKNLEHLQVCGISRLGDVSDVGEAKRLELDKKKYLSSLTLWF  359 (488)
Q Consensus       280 ~~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~  359 (488)
                      ....|  ++.+++|++|++.+|...+         +..+..+++|+.|.+....-...      ..+..+++|+.|++++
T Consensus       212 ~~~~~--~~~l~~L~~L~l~~n~l~~---------~~~l~~l~~L~~L~l~~n~l~~~------~~~~~l~~L~~L~l~~  274 (466)
T 1o6v_A          212 SDITP--LGILTNLDELSLNGNQLKD---------IGTLASLTNLTDLDLANNQISNL------APLSGLTKLTELKLGA  274 (466)
T ss_dssp             CCCGG--GGGCTTCCEEECCSSCCCC---------CGGGGGCTTCSEEECCSSCCCCC------GGGTTCTTCSEEECCS
T ss_pred             ccccc--ccccCCCCEEECCCCCccc---------chhhhcCCCCCEEECCCCccccc------hhhhcCCCCCEEECCC
Confidence            32222  4455556666555554432         12344455555555543321111      1144555666666666


Q ss_pred             cCchhhhhhhccccchHHHhhhCCCCCCCCEEEeccccCCCCCchHHHhccCCcEEeecCCCCCCCCCCCCCCCCcCeee
Q 038150          360 DKEEEEEGERRKNEDNQLLLEALRPPLNLKELEIEYYRGNTVFPSWMTSLTNLKSLDLSSCENCEQLPPLGKLQSLENLH  439 (488)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~  439 (488)
                      |.+...             +. +..+++|+.|++++|.+.. ++. ++.+++|+.|++++|...... .++.+++|+.|+
T Consensus       275 n~l~~~-------------~~-~~~l~~L~~L~L~~n~l~~-~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~  337 (466)
T 1o6v_A          275 NQISNI-------------SP-LAGLTALTNLELNENQLED-ISP-ISNLKNLTYLTLYFNNISDIS-PVSSLTKLQRLF  337 (466)
T ss_dssp             SCCCCC-------------GG-GTTCTTCSEEECCSSCCSC-CGG-GGGCTTCSEEECCSSCCSCCG-GGGGCTTCCEEE
T ss_pred             CccCcc-------------cc-ccCCCccCeEEcCCCcccC-chh-hcCCCCCCEEECcCCcCCCch-hhccCccCCEeE
Confidence            654321             11 4445555555555555554 333 445555555555555433322 244455555555


Q ss_pred             eccc
Q 038150          440 IWRM  443 (488)
Q Consensus       440 l~~~  443 (488)
                      +++|
T Consensus       338 l~~n  341 (466)
T 1o6v_A          338 FYNN  341 (466)
T ss_dssp             CCSS
T ss_pred             CCCC
Confidence            5554

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.85  E-value=1.1e-21  Score=199.98  Aligned_cols=126  Identities=17%  Similarity=0.063  Sum_probs=101.9

Q ss_pred             eeeEEEEecCCcCccccccccCcceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccCccCchh
Q 038150          159 RHLMLIFSKAASLPISTLRVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVLPET  238 (488)
Q Consensus       159 r~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~lp~~  238 (488)
                      +.++++.+....+|..+.  ++|++|++++| .+.. ..+..|.++++|++|+|++|.+      ..        ..|..
T Consensus         3 ~~l~ls~n~l~~ip~~~~--~~L~~L~Ls~n-~i~~-~~~~~~~~l~~L~~L~Ls~n~l------~~--------~~~~~   64 (520)
T 2z7x_B            3 FLVDRSKNGLIHVPKDLS--QKTTILNISQN-YISE-LWTSDILSLSKLRILIISHNRI------QY--------LDISV   64 (520)
T ss_dssp             CEEECTTSCCSSCCCSCC--TTCSEEECCSS-CCCC-CCHHHHTTCTTCCEEECCSSCC------CE--------EEGGG
T ss_pred             ceEecCCCCccccccccc--ccccEEECCCC-cccc-cChhhccccccccEEecCCCcc------CC--------cChHH
Confidence            456777777788887665  89999999998 5655 6667899999999999999994      42        33677


Q ss_pred             hhhhccCcEeecCCCCCcccCchhhccccccceeeccCCCCCC-CCCCCCCCcccccccCceeecCCC
Q 038150          239 LCELYNLEKLDISDCFNLKELPEGIGKLINVKHLLNRGTNSLR-YMPVGIGRLTGLRTLGEFHVSAGG  305 (488)
Q Consensus       239 i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~L~l~~~~~~~-~lp~~i~~L~~L~~L~l~~~~~~~  305 (488)
                      ++++++|++|++++|. +..+|..  .+++|++|++++|.+.. .+|..++++++|++|++.+|.+.+
T Consensus        65 ~~~l~~L~~L~Ls~N~-l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~  129 (520)
T 2z7x_B           65 FKFNQELEYLDLSHNK-LVKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK  129 (520)
T ss_dssp             GTTCTTCCEEECCSSC-CCEEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG
T ss_pred             hhcccCCCEEecCCCc-eeecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch
Confidence            8889999999999975 6678876  88999999999998654 467788999999999998887653

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.84  E-value=2.7e-21  Score=201.05  Aligned_cols=136  Identities=18%  Similarity=0.139  Sum_probs=101.7

Q ss_pred             ccccceeeEEEEecCCcCcc-ccccccCcceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccC
Q 038150          154 LDEKVRHLMLIFSKAASLPI-STLRVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEK  232 (488)
Q Consensus       154 ~~~~vr~l~l~~~~~~~~~~-~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~  232 (488)
                      ....++++++..+....++. .+.++++|++|++++| .+.. ..|..|.++++|++|+|++|.+     ..        
T Consensus        30 ~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~-i~~~~~~~l~~L~~L~Ls~n~l-----~~--------   94 (606)
T 3vq2_A           30 IPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRC-EIET-IEDKAWHGLHHLSNLILTGNPI-----QS--------   94 (606)
T ss_dssp             SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTC-CCCE-ECTTTTTTCTTCCEEECTTCCC-----CC--------
T ss_pred             CCCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCC-cccc-cCHHHhhchhhcCEeECCCCcc-----cc--------
Confidence            34678888888888766654 6788999999999987 5554 5566788899999999999984     32        


Q ss_pred             ccCchhhhhhccCcEeecCCCCCcccCchhhccccccceeeccCCCCCC-CCCCCCCCcccccccCceeecCCC
Q 038150          233 LVLPETLCELYNLEKLDISDCFNLKELPEGIGKLINVKHLLNRGTNSLR-YMPVGIGRLTGLRTLGEFHVSAGG  305 (488)
Q Consensus       233 l~lp~~i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~L~l~~~~~~~-~lp~~i~~L~~L~~L~l~~~~~~~  305 (488)
                       ..|..++++++|++|++++|......|..++++++|++|++++|.+.. .+|..++++++|++|++.+|.+.+
T Consensus        95 -~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~  167 (606)
T 3vq2_A           95 -FSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQT  167 (606)
T ss_dssp             -CCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCE
T ss_pred             -cChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCccee
Confidence             235677788888888888876333333667888888888888887543 567778888888888888776554

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.84  E-value=4.2e-21  Score=202.36  Aligned_cols=134  Identities=17%  Similarity=0.133  Sum_probs=111.1

Q ss_pred             ccccceeeEEEEecCCcCcc-ccccccCcceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccC
Q 038150          154 LDEKVRHLMLIFSKAASLPI-STLRVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEK  232 (488)
Q Consensus       154 ~~~~vr~l~l~~~~~~~~~~-~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~  232 (488)
                      ....++++++..+....++. .+.++++|++|++++| .+.. ..|..|.++++|++|+|++|.      +.        
T Consensus        23 ~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~-~~~~~~~~l~~L~~L~L~~n~------l~--------   86 (680)
T 1ziw_A           23 LPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFN-TISK-LEPELCQKLPMLKVLNLQHNE------LS--------   86 (680)
T ss_dssp             SCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSS-CCCC-CCTTHHHHCTTCCEEECCSSC------CC--------
T ss_pred             cCCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCC-ccCc-cCHHHHhcccCcCEEECCCCc------cC--------
Confidence            34689999999998877765 5889999999999997 5555 667789999999999999998      55        


Q ss_pred             ccCch-hhhhhccCcEeecCCCCCcccCc-hhhccccccceeeccCCCCCCCCCCCCCCcccccccCceeecCCC
Q 038150          233 LVLPE-TLCELYNLEKLDISDCFNLKELP-EGIGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFHVSAGG  305 (488)
Q Consensus       233 l~lp~-~i~~L~~L~~L~l~~~~~~~~lp-~~l~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~  305 (488)
                       .+|. .++++++|++|++++|. +..+| ..++++++|++|++++|.+....|..++++++|++|++.+|.+.+
T Consensus        87 -~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  159 (680)
T 1ziw_A           87 -QLSDKTFAFCTNLTELHLMSNS-IQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQA  159 (680)
T ss_dssp             -CCCTTTTTTCTTCSEEECCSSC-CCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCC
T ss_pred             -ccChhhhccCCCCCEEECCCCc-cCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccc
Confidence             4444 58889999999999986 45554 678999999999999998766667778999999999998887654

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.84  E-value=1.1e-20  Score=188.55  Aligned_cols=232  Identities=14%  Similarity=0.113  Sum_probs=109.4

Q ss_pred             cccceeeEEEEecCCcCccccccccCcceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccCcc
Q 038150          155 DEKVRHLMLIFSKAASLPISTLRVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLV  234 (488)
Q Consensus       155 ~~~vr~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~  234 (488)
                      ...++.++++.+....+| .+..+++|++|++++| .+..  ++  +..+++|++|++++|.      +.         .
T Consensus        41 l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n-~l~~--~~--~~~l~~L~~L~Ls~N~------l~---------~   99 (457)
T 3bz5_A           41 LATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSN-NITT--LD--LSQNTNLTYLACDSNK------LT---------N   99 (457)
T ss_dssp             HTTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSS-CCSC--CC--CTTCTTCSEEECCSSC------CS---------C
T ss_pred             cCCCCEEEccCCCcccCh-hhcccCCCCEEEccCC-cCCe--Ec--cccCCCCCEEECcCCC------Cc---------e
Confidence            345555555555555554 4555566666666655 3332  22  4555566666666655      22         1


Q ss_pred             CchhhhhhccCcEeecCCCCCcccCchhhccccccceeeccCCC---------------------CCCCCCCCCCCcccc
Q 038150          235 LPETLCELYNLEKLDISDCFNLKELPEGIGKLINVKHLLNRGTN---------------------SLRYMPVGIGRLTGL  293 (488)
Q Consensus       235 lp~~i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~L~l~~~~---------------------~~~~lp~~i~~L~~L  293 (488)
                      +|  ++.+++|++|++++|. +..+|  ++.+++|++|++++|.                     ....+  .++.+++|
T Consensus       100 ~~--~~~l~~L~~L~L~~N~-l~~l~--~~~l~~L~~L~l~~N~l~~l~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L  172 (457)
T 3bz5_A          100 LD--VTPLTKLTYLNCDTNK-LTKLD--VSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKL--DVTPQTQL  172 (457)
T ss_dssp             CC--CTTCTTCCEEECCSSC-CSCCC--CTTCTTCCEEECTTSCCSCCCCTTCTTCCEEECTTCSCCCCC--CCTTCTTC
T ss_pred             ee--cCCCCcCCEEECCCCc-CCeec--CCCCCcCCEEECCCCccceeccccCCcCCEEECCCCCccccc--ccccCCcC
Confidence            21  3444455555555543 33333  4444555555555444                     23322  24444445


Q ss_pred             cccCceeecCCCCCCCCcccCcccccCCCcccccccccccCCCChhhhhHhhcccCCCCCceeecccCchhhhhhhcccc
Q 038150          294 RTLGEFHVSAGGGVDGRKACRLESLKNLEHLQVCGISRLGDVSDVGEAKRLELDKKKYLSSLTLWFDKEEEEEGERRKNE  373 (488)
Q Consensus       294 ~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~  373 (488)
                      ++|++.+|.+.+     .+     +..+++|+.|.+....- ..      ..+..+++|+.|++++|.+.+         
T Consensus       173 ~~L~ls~n~l~~-----l~-----l~~l~~L~~L~l~~N~l-~~------~~l~~l~~L~~L~Ls~N~l~~---------  226 (457)
T 3bz5_A          173 TTLDCSFNKITE-----LD-----VSQNKLLNRLNCDTNNI-TK------LDLNQNIQLTFLDCSSNKLTE---------  226 (457)
T ss_dssp             CEEECCSSCCCC-----CC-----CTTCTTCCEEECCSSCC-SC------CCCTTCTTCSEEECCSSCCSC---------
T ss_pred             CEEECCCCccce-----ec-----cccCCCCCEEECcCCcC-Ce------eccccCCCCCEEECcCCcccc---------
Confidence            555444444332     11     33344444444432211 10      024455566666666665531         


Q ss_pred             chHHHhhhCCCCCCCCEEEeccccCCCCCchHHHhccCCc----------EEeecCCCCCCCCCCCCCCCCcCeeeeccc
Q 038150          374 DNQLLLEALRPPLNLKELEIEYYRGNTVFPSWMTSLTNLK----------SLDLSSCENCEQLPPLGKLQSLENLHIWRM  443 (488)
Q Consensus       374 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~----------~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~  443 (488)
                          +|  +..+++|+.|++++|.+.. +|  ++.+++|+          .|++++|...+.+| .+.+++|+.|++++|
T Consensus       227 ----ip--~~~l~~L~~L~l~~N~l~~-~~--~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~-~~~l~~L~~L~Ls~n  296 (457)
T 3bz5_A          227 ----ID--VTPLTQLTYFDCSVNPLTE-LD--VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ-AEGCRKIKELDVTHN  296 (457)
T ss_dssp             ----CC--CTTCTTCSEEECCSSCCSC-CC--CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE-CTTCTTCCCCCCTTC
T ss_pred             ----cC--ccccCCCCEEEeeCCcCCC-cC--HHHCCCCCEEeccCCCCCEEECCCCccCCccc-ccccccCCEEECCCC
Confidence                22  4555666666666666555 33  12333333          33333333333333 345566666666666


Q ss_pred             ccceeeC
Q 038150          444 ESVKRVG  450 (488)
Q Consensus       444 ~~l~~~~  450 (488)
                      ..++.+|
T Consensus       297 ~~l~~l~  303 (457)
T 3bz5_A          297 TQLYLLD  303 (457)
T ss_dssp             TTCCEEE
T ss_pred             cccceec
Confidence            6555554

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.84  E-value=1.4e-21  Score=203.19  Aligned_cols=269  Identities=16%  Similarity=0.053  Sum_probs=193.5

Q ss_pred             cccceeeEEEEecCCcCccccccccCcceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccCcc
Q 038150          155 DEKVRHLMLIFSKAASLPISTLRVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLV  234 (488)
Q Consensus       155 ~~~vr~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~  234 (488)
                      ...++.+.+..+....+| .+..+++|++|++.+| .+.  .+|. + .+++|++|++++|..     ..          
T Consensus       284 l~~L~~L~l~~~~~~~l~-~l~~~~~L~~L~l~~n-~l~--~lp~-~-~l~~L~~L~l~~n~~-----~~----------  342 (606)
T 3vq2_A          284 LANVSAMSLAGVSIKYLE-DVPKHFKWQSLSIIRC-QLK--QFPT-L-DLPFLKSLTLTMNKG-----SI----------  342 (606)
T ss_dssp             GTTCSEEEEESCCCCCCC-CCCTTCCCSEEEEESC-CCS--SCCC-C-CCSSCCEEEEESCSS-----CE----------
T ss_pred             CCCCCEEEecCccchhhh-hccccccCCEEEcccc-cCc--cccc-C-CCCccceeeccCCcC-----cc----------
Confidence            456667777777777676 6667777888888776 333  4553 3 777788888877753     22          


Q ss_pred             CchhhhhhccCcEeecCCCCCccc--CchhhccccccceeeccCCCCCCCCCCCCCCcccccccCceeecCCCCCCCCcc
Q 038150          235 LPETLCELYNLEKLDISDCFNLKE--LPEGIGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGRKA  312 (488)
Q Consensus       235 lp~~i~~L~~L~~L~l~~~~~~~~--lp~~l~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~  312 (488)
                       +..++.+++|++|++++|.....  .|..++.+++|++|++++|. ...+|..++.+++|++|++.+|...+      .
T Consensus       343 -~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L~l~~n~l~~------~  414 (606)
T 3vq2_A          343 -SFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNG-AIIMSANFMGLEELQHLDFQHSTLKR------V  414 (606)
T ss_dssp             -ECCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCS-EEEECCCCTTCTTCCEEECTTSEEES------T
T ss_pred             -chhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCc-cccchhhccCCCCCCeeECCCCccCC------c
Confidence             12455788899999988753322  37788888999999998887 45577778888999999888887654      1


Q ss_pred             cCcccccCCCcccccccccccCCCChhhhhHhhcccCCCCCceeecccCchhhhhhhccccchHHHhhhCCCCCCCCEEE
Q 038150          313 CRLESLKNLEHLQVCGISRLGDVSDVGEAKRLELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKELE  392 (488)
Q Consensus       313 ~~~~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~  392 (488)
                      .....+..+++|+.|.++...-..    ..+..+..+++|+.|++++|.+.+           ..+|..+..+++|+.|+
T Consensus       415 ~~~~~~~~l~~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~l~~n~l~~-----------~~~~~~~~~l~~L~~L~  479 (606)
T 3vq2_A          415 TEFSAFLSLEKLLYLDISYTNTKI----DFDGIFLGLTSLNTLKMAGNSFKD-----------NTLSNVFANTTNLTFLD  479 (606)
T ss_dssp             TTTTTTTTCTTCCEEECTTSCCEE----CCTTTTTTCTTCCEEECTTCEEGG-----------GEECSCCTTCTTCCEEE
T ss_pred             cChhhhhccccCCEEECcCCCCCc----cchhhhcCCCCCCEEECCCCcCCC-----------cchHHhhccCCCCCEEE
Confidence            112345667778877776543211    123457778899999999887742           12467788889999999


Q ss_pred             eccccCCCCCchHHHhccCCcEEeecCCCCCCCCCC-CCCCCCcCeeeecccccceeeCccccCCCCCCCCCCCCCcccc
Q 038150          393 IEYYRGNTVFPSWMTSLTNLKSLDLSSCENCEQLPP-LGKLQSLENLHIWRMESVKRVGDEFLGIESDHHGSSSSSSVII  471 (488)
Q Consensus       393 l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~-l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  471 (488)
                      +++|.+....|.+++.+++|++|++++|......|. ++.+++|++|++++|. ++.+|..                 ..
T Consensus       480 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~p~~-----------------~~  541 (606)
T 3vq2_A          480 LSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNR-IETSKGI-----------------LQ  541 (606)
T ss_dssp             CTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSC-CCCEESC-----------------GG
T ss_pred             CCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCc-CcccCHh-----------------Hh
Confidence            999988875677888899999999999987776565 8888999999998887 6677665                 23


Q ss_pred             cCc-ccccccccccc
Q 038150          472 AFP-KLKSLSIEVLR  485 (488)
Q Consensus       472 ~~p-~L~~L~l~~~p  485 (488)
                      .+| +|++|.+.++|
T Consensus       542 ~l~~~L~~l~l~~N~  556 (606)
T 3vq2_A          542 HFPKSLAFFNLTNNS  556 (606)
T ss_dssp             GSCTTCCEEECCSCC
T ss_pred             hhcccCcEEEccCCC
Confidence            465 58888887765

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.84  E-value=1.6e-20  Score=188.59  Aligned_cols=121  Identities=17%  Similarity=0.177  Sum_probs=89.4

Q ss_pred             ccccceeeEEEEecCCcCccccccccCcceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccCc
Q 038150          154 LDEKVRHLMLIFSKAASLPISTLRVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKL  233 (488)
Q Consensus       154 ~~~~vr~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l  233 (488)
                      ....++.+.+..+....+| .+..+++|++|++++| .+.. . +. +.++++|++|++++|.      +.         
T Consensus        44 ~l~~l~~L~l~~~~i~~l~-~~~~l~~L~~L~Ls~n-~l~~-~-~~-~~~l~~L~~L~l~~n~------l~---------  103 (466)
T 1o6v_A           44 DLDQVTTLQADRLGIKSID-GVEYLNNLTQINFSNN-QLTD-I-TP-LKNLTKLVDILMNNNQ------IA---------  103 (466)
T ss_dssp             HHHTCCEEECCSSCCCCCT-TGGGCTTCCEEECCSS-CCCC-C-GG-GTTCTTCCEEECCSSC------CC---------
T ss_pred             HhccccEEecCCCCCccCc-chhhhcCCCEEECCCC-ccCC-c-hh-hhccccCCEEECCCCc------cc---------
Confidence            3567889999888888887 4778999999999998 5554 3 33 8999999999999998      44         


Q ss_pred             cCchhhhhhccCcEeecCCCCCcccCchhhccccccceeeccCCCCCCCCCCCCCCcccccccCce
Q 038150          234 VLPETLCELYNLEKLDISDCFNLKELPEGIGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEF  299 (488)
Q Consensus       234 ~lp~~i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~  299 (488)
                      .+|. ++++++|++|++++|. +..+|. ++++++|++|++++|.+ ..++ .++++++|++|.+.
T Consensus       104 ~~~~-~~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~l~~n~l-~~~~-~~~~l~~L~~L~l~  164 (466)
T 1o6v_A          104 DITP-LANLTNLTGLTLFNNQ-ITDIDP-LKNLTNLNRLELSSNTI-SDIS-ALSGLTSLQQLSFG  164 (466)
T ss_dssp             CCGG-GTTCTTCCEEECCSSC-CCCCGG-GTTCTTCSEEEEEEEEE-CCCG-GGTTCTTCSEEEEE
T ss_pred             cChh-hcCCCCCCEEECCCCC-CCCChH-HcCCCCCCEEECCCCcc-CCCh-hhccCCcccEeecC
Confidence            3444 7788888888888865 566654 77888888888887763 3333 35555555555553

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.84  E-value=1e-20  Score=194.27  Aligned_cols=91  Identities=20%  Similarity=0.101  Sum_probs=65.2

Q ss_pred             cCCCCCceeecccCchhhhhhhccccchHHHhhhCCCCCCCCEEEeccccCCCCCc---hHHHhccCCcEEeecCCCCCC
Q 038150          348 KKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKELEIEYYRGNTVFP---SWMTSLTNLKSLDLSSCENCE  424 (488)
Q Consensus       348 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~lp---~~~~~l~~L~~L~l~~~~~~~  424 (488)
                      .+++|+.|++++|.+.+..         ...+..++.+++|+.|++++|.+.. +|   ..++.+++|++|++++|... 
T Consensus       332 ~l~~L~~L~Ls~N~l~~~~---------~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~~~l~~L~~L~Ls~N~l~-  400 (549)
T 2z81_A          332 HLKSLEFLDLSENLMVEEY---------LKNSACKGAWPSLQTLVLSQNHLRS-MQKTGEILLTLKNLTSLDISRNTFH-  400 (549)
T ss_dssp             HCTTCCEEECCSSCCCHHH---------HHHHTCTTSSTTCCEEECTTSCCCC-HHHHHHHGGGCTTCCEEECTTCCCC-
T ss_pred             cCccccEEEccCCcccccc---------ccchhhhhccccCcEEEccCCcccc-cccchhhhhcCCCCCEEECCCCCCc-
Confidence            4666777777777664221         1113346778899999999998876 54   34778899999999999755 


Q ss_pred             CCCC-CCCCCCcCeeeecccccceeeC
Q 038150          425 QLPP-LGKLQSLENLHIWRMESVKRVG  450 (488)
Q Consensus       425 ~~~~-l~~l~~L~~L~l~~~~~l~~~~  450 (488)
                      .+|. ++.+++|++|++++|. ++.++
T Consensus       401 ~lp~~~~~~~~L~~L~Ls~N~-l~~l~  426 (549)
T 2z81_A          401 PMPDSCQWPEKMRFLNLSSTG-IRVVK  426 (549)
T ss_dssp             CCCSCCCCCTTCCEEECTTSC-CSCCC
T ss_pred             cCChhhcccccccEEECCCCC-ccccc
Confidence            5665 7888899999998886 55544

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.84  E-value=1e-20  Score=185.65  Aligned_cols=245  Identities=13%  Similarity=0.080  Sum_probs=149.1

Q ss_pred             cccCcceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccCccCchhhhhhccCcEeecCCCCCc
Q 038150          177 RVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVLPETLCELYNLEKLDISDCFNL  256 (488)
Q Consensus       177 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~lp~~i~~L~~L~~L~l~~~~~~  256 (488)
                      .++++++|++.++ .+.. ..+..+..+++|++|++++|.      +..+        .|..++.+++|++|++++|...
T Consensus        43 ~l~~l~~l~l~~~-~l~~-l~~~~~~~l~~L~~L~L~~n~------i~~~--------~~~~~~~l~~L~~L~L~~n~l~  106 (390)
T 3o6n_A           43 TLNNQKIVTFKNS-TMRK-LPAALLDSFRQVELLNLNDLQ------IEEI--------DTYAFAYAHTIQKLYMGFNAIR  106 (390)
T ss_dssp             GGCCCSEEEEESC-EESE-ECTHHHHHCCCCSEEECTTSC------CCEE--------CTTTTTTCTTCCEEECCSSCCC
T ss_pred             ccCCceEEEecCC-chhh-CChhHhcccccCcEEECCCCc------cccc--------ChhhccCCCCcCEEECCCCCCC
Confidence            5799999999997 5654 555668999999999999998      4432        2347889999999999998744


Q ss_pred             ccCchhhccccccceeeccCCCCCCCCCCC-CCCcccccccCceeecCCCCCCCCcccCcccccCCCccccccccccc--
Q 038150          257 KELPEGIGKLINVKHLLNRGTNSLRYMPVG-IGRLTGLRTLGEFHVSAGGGVDGRKACRLESLKNLEHLQVCGISRLG--  333 (488)
Q Consensus       257 ~~lp~~l~~L~~L~~L~l~~~~~~~~lp~~-i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~--  333 (488)
                      ...|..++++++|++|++++|. ...+|.. ++++++|++|++.+|.+...       ....+..+++|+.|.+....  
T Consensus       107 ~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~-------~~~~~~~l~~L~~L~l~~n~l~  178 (390)
T 3o6n_A          107 YLPPHVFQNVPLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERI-------EDDTFQATTSLQNLQLSSNRLT  178 (390)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBC-------CTTTTSSCTTCCEEECCSSCCS
T ss_pred             cCCHHHhcCCCCCCEEECCCCc-cCcCCHHHhcCCCCCcEEECCCCccCcc-------ChhhccCCCCCCEEECCCCcCC
Confidence            4445668999999999999998 4567766 58999999999999876541       12234556667766664322  


Q ss_pred             CCCChhhhhH------------hhcccCCCCCceeecccCchhhhhh---------hccccchHHHhhhCCCCCCCCEEE
Q 038150          334 DVSDVGEAKR------------LELDKKKYLSSLTLWFDKEEEEEGE---------RRKNEDNQLLLEALRPPLNLKELE  392 (488)
Q Consensus       334 ~~~~~~~~~~------------~~l~~l~~L~~L~l~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~L~~L~  392 (488)
                      .++.  ..+.            ..+....+|+.|++++|.+......         ...+....  +.++..+++|+.|+
T Consensus       179 ~~~~--~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~--~~~l~~l~~L~~L~  254 (390)
T 3o6n_A          179 HVDL--SLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTD--TAWLLNYPGLVEVD  254 (390)
T ss_dssp             BCCG--GGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCC--CGGGGGCTTCSEEE
T ss_pred             cccc--ccccccceeecccccccccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCcc--cHHHcCCCCccEEE
Confidence            1110  0000            0001112222233322222110000         00000000  13455566667777


Q ss_pred             eccccCCCCCchHHHhccCCcEEeecCCCCCCCCCC-CCCCCCcCeeeecccccceeeCc
Q 038150          393 IEYYRGNTVFPSWMTSLTNLKSLDLSSCENCEQLPP-LGKLQSLENLHIWRMESVKRVGD  451 (488)
Q Consensus       393 l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~-l~~l~~L~~L~l~~~~~l~~~~~  451 (488)
                      +++|.+....|..+..+++|++|++++|.... +|. .+.+|+|++|++++|. +..+|.
T Consensus       255 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~-l~~~~~  312 (390)
T 3o6n_A          255 LSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNH-LLHVER  312 (390)
T ss_dssp             CCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSC-CCCCGG
T ss_pred             CCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCc-ceecCc
Confidence            76666665345666666677777776665433 333 5556677777776664 444443

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.83  E-value=1.1e-20  Score=195.63  Aligned_cols=279  Identities=13%  Similarity=0.068  Sum_probs=164.4

Q ss_pred             cccCcceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccCccCchhhhhhccCcEeecCCCCCc
Q 038150          177 RVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVLPETLCELYNLEKLDISDCFNL  256 (488)
Q Consensus       177 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~lp~~i~~L~~L~~L~l~~~~~~  256 (488)
                      .+.+++.|++.++ .+.. .++..+..+++|++|+|++|.      +..        ..|..++.+++|++|++++|...
T Consensus        49 ~l~~l~~l~l~~~-~l~~-lp~~~~~~l~~L~~L~L~~n~------l~~--------~~~~~~~~l~~L~~L~L~~n~l~  112 (597)
T 3oja_B           49 TLNNQKIVTFKNS-TMRK-LPAALLDSFRQVELLNLNDLQ------IEE--------IDTYAFAYAHTIQKLYMGFNAIR  112 (597)
T ss_dssp             GGCCCSEEEESSC-EESE-ECTHHHHHCCCCSEEECTTSC------CCE--------ECTTTTTTCTTCCEEECCSSCCC
T ss_pred             cCCCceEEEeeCC-CCCC-cCHHHHccCCCCcEEECCCCC------CCC--------CChHHhcCCCCCCEEECCCCcCC
Confidence            4789999999997 5655 666778999999999999998      442        23357889999999999998744


Q ss_pred             ccCchhhccccccceeeccCCCCCCCCCCC-CCCcccccccCceeecCCCCCCCCcccCcccccCCCcccccccccc--c
Q 038150          257 KELPEGIGKLINVKHLLNRGTNSLRYMPVG-IGRLTGLRTLGEFHVSAGGGVDGRKACRLESLKNLEHLQVCGISRL--G  333 (488)
Q Consensus       257 ~~lp~~l~~L~~L~~L~l~~~~~~~~lp~~-i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~--~  333 (488)
                      ...|..++.+++|++|++++|.+ ..+|.. ++++++|++|++.+|.+.+.       ....+..+++|+.|.+...  .
T Consensus       113 ~~~~~~~~~l~~L~~L~L~~n~l-~~l~~~~~~~l~~L~~L~Ls~N~l~~~-------~~~~~~~l~~L~~L~L~~N~l~  184 (597)
T 3oja_B          113 YLPPHVFQNVPLLTVLVLERNDL-SSLPRGIFHNTPKLTTLSMSNNNLERI-------EDDTFQATTSLQNLQLSSNRLT  184 (597)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSCCCBC-------CTTTTTTCTTCCEEECTTSCCS
T ss_pred             CCCHHHHcCCCCCCEEEeeCCCC-CCCCHHHhccCCCCCEEEeeCCcCCCC-------ChhhhhcCCcCcEEECcCCCCC
Confidence            44445679999999999999984 466655 69999999999999877652       1223455666776666432  2


Q ss_pred             CCCChhhhhH------------hhcccCCCCCceeecccCchhhhhh---------hccccchHHHhhhCCCCCCCCEEE
Q 038150          334 DVSDVGEAKR------------LELDKKKYLSSLTLWFDKEEEEEGE---------RRKNEDNQLLLEALRPPLNLKELE  392 (488)
Q Consensus       334 ~~~~~~~~~~------------~~l~~l~~L~~L~l~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~L~~L~  392 (488)
                      .++.  ..++            ..+....+|+.|++++|.+......         ...+....  +.++..+++|+.|+
T Consensus       185 ~~~~--~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~  260 (597)
T 3oja_B          185 HVDL--SLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTD--TAWLLNYPGLVEVD  260 (597)
T ss_dssp             BCCG--GGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCC--CGGGGGCTTCSEEE
T ss_pred             CcCh--hhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCC--ChhhccCCCCCEEE
Confidence            2110  0000            0011112222233322222110000         00000001  24455666777777


Q ss_pred             eccccCCCCCchHHHhccCCcEEeecCCCCCCCCCC-CCCCCCcCeeeecccccceeeCccccCCCCCCC----CCCCCC
Q 038150          393 IEYYRGNTVFPSWMTSLTNLKSLDLSSCENCEQLPP-LGKLQSLENLHIWRMESVKRVGDEFLGIESDHH----GSSSSS  467 (488)
Q Consensus       393 l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~-l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~----~~~~~~  467 (488)
                      |++|.+....|..++.+++|+.|+|++|.... +|. .+.+|+|+.|++++|. +..+|..+..+.....    ......
T Consensus       261 Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~l~~L~~L~L~~N~l~~  338 (597)
T 3oja_B          261 LSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNH-LLHVERNQPQFDRLENLYLDHNSIVT  338 (597)
T ss_dssp             CCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSC-CCCCGGGHHHHTTCSEEECCSSCCCC
T ss_pred             CCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCC-CCccCcccccCCCCCEEECCCCCCCC
Confidence            77776666446666667777777777766433 333 5556777777776665 4444433211100000    000001


Q ss_pred             cccccCcccccccccccc
Q 038150          468 SVIIAFPKLKSLSIEVLR  485 (488)
Q Consensus       468 ~~~~~~p~L~~L~l~~~p  485 (488)
                      ...+.+|+|+.|.+.++|
T Consensus       339 ~~~~~~~~L~~L~l~~N~  356 (597)
T 3oja_B          339 LKLSTHHTLKNLTLSHND  356 (597)
T ss_dssp             CCCCTTCCCSEEECCSSC
T ss_pred             cChhhcCCCCEEEeeCCC
Confidence            124567777777777654

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.83  E-value=1.9e-20  Score=192.63  Aligned_cols=126  Identities=15%  Similarity=0.106  Sum_probs=88.3

Q ss_pred             cccceeeEEEEecCCcCc-cccccccCcceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccCc
Q 038150          155 DEKVRHLMLIFSKAASLP-ISTLRVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKL  233 (488)
Q Consensus       155 ~~~vr~l~l~~~~~~~~~-~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l  233 (488)
                      ...++.+++..+....++ ..+..+++|++|++++| .+.. ..|..|.++++|++|+|++|.      +..+       
T Consensus        51 ~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~-~~~~~~~~l~~L~~L~Ls~N~------l~~l-------  115 (562)
T 3a79_B           51 PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHN-RIRS-LDFHVFLFNQDLEYLDVSHNR------LQNI-------  115 (562)
T ss_dssp             CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSC-CCCE-ECTTTTTTCTTCCEEECTTSC------CCEE-------
T ss_pred             CCCcCEEECCCCCccccChhhhccCCCccEEECCCC-CCCc-CCHHHhCCCCCCCEEECCCCc------CCcc-------
Confidence            378899999999887776 57889999999999998 5655 556778999999999999999      5544       


Q ss_pred             cCchhhhhhccCcEeecCCCCCccc--CchhhccccccceeeccCCCCCCCCCCCCCCcccc--cccCceeecC
Q 038150          234 VLPETLCELYNLEKLDISDCFNLKE--LPEGIGKLINVKHLLNRGTNSLRYMPVGIGRLTGL--RTLGEFHVSA  303 (488)
Q Consensus       234 ~lp~~i~~L~~L~~L~l~~~~~~~~--lp~~l~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L--~~L~l~~~~~  303 (488)
                        |..  .+++|++|++++|. +..  +|..++++++|++|++++|.+..   ..++.+++|  ++|++..|.+
T Consensus       116 --p~~--~l~~L~~L~Ls~N~-l~~l~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~L~~n~l  181 (562)
T 3a79_B          116 --SCC--PMASLRHLDLSFND-FDVLPVCKEFGNLTKLTFLGLSAAKFRQ---LDLLPVAHLHLSCILLDLVSY  181 (562)
T ss_dssp             --CSC--CCTTCSEEECCSSC-CSBCCCCGGGGGCTTCCEEEEECSBCCT---TTTGGGTTSCEEEEEEEESSC
T ss_pred             --Ccc--ccccCCEEECCCCC-ccccCchHhhcccCcccEEecCCCcccc---CchhhhhhceeeEEEeecccc
Confidence              433  56777777777765 333  34667777777777777766432   223333333  5555555443

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.83  E-value=8e-21  Score=179.99  Aligned_cols=245  Identities=17%  Similarity=0.064  Sum_probs=157.7

Q ss_pred             eEEEEecCCcCccccccccCcceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccCccCchhhh
Q 038150          161 LMLIFSKAASLPISTLRVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVLPETLC  240 (488)
Q Consensus       161 l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~lp~~i~  240 (488)
                      +.........+|..+  .+++++|++.+| .+.. ..+..|.++++|++|++++|.      +..+.      ..|..+.
T Consensus        12 l~c~~~~l~~ip~~~--~~~l~~L~L~~n-~l~~-i~~~~~~~l~~L~~L~L~~n~------l~~~~------~~~~~~~   75 (306)
T 2z66_A           12 IRCNSKGLTSVPTGI--PSSATRLELESN-KLQS-LPHGVFDKLTQLTKLSLSSNG------LSFKG------CCSQSDF   75 (306)
T ss_dssp             EECCSSCCSSCCSCC--CTTCCEEECCSS-CCCC-CCTTTTTTCTTCSEEECCSSC------CCEEE------EEEHHHH
T ss_pred             EEcCCCCcccCCCCC--CCCCCEEECCCC-ccCc-cCHhHhhccccCCEEECCCCc------cCccc------Ccccccc
Confidence            333333445555433  256777777765 3443 333345667777777777776      22110      2245556


Q ss_pred             hhccCcEeecCCCCCcccCchhhccccccceeeccCCCCCCCCC-CCCCCcccccccCceeecCCCCCCCCcccCccccc
Q 038150          241 ELYNLEKLDISDCFNLKELPEGIGKLINVKHLLNRGTNSLRYMP-VGIGRLTGLRTLGEFHVSAGGGVDGRKACRLESLK  319 (488)
Q Consensus       241 ~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~L~l~~~~~~~~lp-~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~  319 (488)
                      .+++|++|++++|. +..+|..+..+++|++|++++|.+....+ ..+.++++|++|++.+|....       .....+.
T Consensus        76 ~~~~L~~L~Ls~n~-i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~-------~~~~~~~  147 (306)
T 2z66_A           76 GTTSLKYLDLSFNG-VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV-------AFNGIFN  147 (306)
T ss_dssp             SCSCCCEEECCSCS-EEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEE-------CSTTTTT
T ss_pred             cccccCEEECCCCc-cccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCc-------cchhhcc
Confidence            66777777777754 55566667777777777777766332222 356677777777776665432       1122344


Q ss_pred             CCCcccccccccccCCCChhhhhHhhcccCCCCCceeecccCchhhhhhhccccchHHHhhhCCCCCCCCEEEeccccCC
Q 038150          320 NLEHLQVCGISRLGDVSDVGEAKRLELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKELEIEYYRGN  399 (488)
Q Consensus       320 ~L~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  399 (488)
                      .+++|+.|.+....-..   ...+..+..+++|+.|++++|.+.            ...+..+..+++|+.|++++|.+.
T Consensus       148 ~l~~L~~L~l~~n~l~~---~~~~~~~~~l~~L~~L~Ls~n~l~------------~~~~~~~~~l~~L~~L~L~~N~l~  212 (306)
T 2z66_A          148 GLSSLEVLKMAGNSFQE---NFLPDIFTELRNLTFLDLSQCQLE------------QLSPTAFNSLSSLQVLNMSHNNFF  212 (306)
T ss_dssp             TCTTCCEEECTTCEEGG---GEECSCCTTCTTCCEEECTTSCCC------------EECTTTTTTCTTCCEEECTTSCCS
T ss_pred             cCcCCCEEECCCCcccc---ccchhHHhhCcCCCEEECCCCCcC------------CcCHHHhcCCCCCCEEECCCCccC
Confidence            55566665554322100   012345677899999999999875            223567888999999999999988


Q ss_pred             CCCchHHHhccCCcEEeecCCCCCCCCCC-CCCCC-CcCeeeecccc
Q 038150          400 TVFPSWMTSLTNLKSLDLSSCENCEQLPP-LGKLQ-SLENLHIWRME  444 (488)
Q Consensus       400 ~~lp~~~~~l~~L~~L~l~~~~~~~~~~~-l~~l~-~L~~L~l~~~~  444 (488)
                      ...+..+..+++|++|++++|......+. +..+| +|++|++++|+
T Consensus       213 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~  259 (306)
T 2z66_A          213 SLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND  259 (306)
T ss_dssp             BCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred             ccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCC
Confidence            74455788899999999999998777665 78885 99999999987

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.83  E-value=2.1e-20  Score=186.94  Aligned_cols=242  Identities=16%  Similarity=0.144  Sum_probs=181.1

Q ss_pred             eeEEEEecCCcCccccccccCcceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccCccCchhh
Q 038150          160 HLMLIFSKAASLPISTLRVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVLPETL  239 (488)
Q Consensus       160 ~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~lp~~i  239 (488)
                      .+.........+|..+  .+++++|++++| .+.. ..+..|.++++|++|+|++|.      +..        ..|..+
T Consensus        58 ~v~c~~~~l~~iP~~~--~~~l~~L~L~~n-~i~~-~~~~~~~~l~~L~~L~Ls~n~------i~~--------~~~~~~  119 (452)
T 3zyi_A           58 KVVCTRRGLSEVPQGI--PSNTRYLNLMEN-NIQM-IQADTFRHLHHLEVLQLGRNS------IRQ--------IEVGAF  119 (452)
T ss_dssp             EEECCSSCCSSCCSCC--CTTCSEEECCSS-CCCE-ECTTTTTTCTTCCEEECCSSC------CCE--------ECTTTT
T ss_pred             EEEECCCCcCccCCCC--CCCccEEECcCC-cCce-ECHHHcCCCCCCCEEECCCCc------cCC--------cChhhc
Confidence            4444444456677654  378999999997 5554 556678899999999999998      442        234567


Q ss_pred             hhhccCcEeecCCCCCcccCch-hhccccccceeeccCCCCCCCCCCCCCCcccccccCceeecCCCCCCCCcccCcccc
Q 038150          240 CELYNLEKLDISDCFNLKELPE-GIGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGRKACRLESL  318 (488)
Q Consensus       240 ~~L~~L~~L~l~~~~~~~~lp~-~l~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l  318 (488)
                      .++++|++|++++|. +..+|. .+..+++|++|++++|.+....+..+.++++|++|++.++.....      .....+
T Consensus       120 ~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~------i~~~~~  192 (452)
T 3zyi_A          120 NGLASLNTLELFDNW-LTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEY------ISEGAF  192 (452)
T ss_dssp             TTCTTCCEEECCSSC-CSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCE------ECTTTT
T ss_pred             cCcccCCEEECCCCc-CCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccc------cChhhc
Confidence            889999999999976 556655 478899999999999985433334688999999999987544331      112345


Q ss_pred             cCCCcccccccccccCCCChhhhhHhhcccCCCCCceeecccCchhhhhhhccccchHHHhhhCCCCCCCCEEEeccccC
Q 038150          319 KNLEHLQVCGISRLGDVSDVGEAKRLELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKELEIEYYRG  398 (488)
Q Consensus       319 ~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  398 (488)
                      ..+++|+.|.+....-.. .     ..+..+++|+.|++++|.+.            ...+..+..+++|+.|++++|.+
T Consensus       193 ~~l~~L~~L~L~~n~l~~-~-----~~~~~l~~L~~L~Ls~N~l~------------~~~~~~~~~l~~L~~L~L~~n~l  254 (452)
T 3zyi_A          193 EGLFNLKYLNLGMCNIKD-M-----PNLTPLVGLEELEMSGNHFP------------EIRPGSFHGLSSLKKLWVMNSQV  254 (452)
T ss_dssp             TTCTTCCEEECTTSCCSS-C-----CCCTTCTTCCEEECTTSCCS------------EECGGGGTTCTTCCEEECTTSCC
T ss_pred             cCCCCCCEEECCCCcccc-c-----ccccccccccEEECcCCcCc------------ccCcccccCccCCCEEEeCCCcC
Confidence            667778887775432211 1     24677899999999999885            33367788999999999999999


Q ss_pred             CCCCchHHHhccCCcEEeecCCCCCCCCCC-CCCCCCcCeeeecccc
Q 038150          399 NTVFPSWMTSLTNLKSLDLSSCENCEQLPP-LGKLQSLENLHIWRME  444 (488)
Q Consensus       399 ~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~-l~~l~~L~~L~l~~~~  444 (488)
                      ....|..+..+++|+.|+|++|......+. +..+++|+.|++++|+
T Consensus       255 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np  301 (452)
T 3zyi_A          255 SLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNP  301 (452)
T ss_dssp             CEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred             ceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCC
Confidence            885678888999999999999986654444 7889999999999886

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.82  E-value=2.9e-20  Score=185.34  Aligned_cols=241  Identities=16%  Similarity=0.168  Sum_probs=182.0

Q ss_pred             eeeEEEEecCCcCccccccccCcceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccCccCchh
Q 038150          159 RHLMLIFSKAASLPISTLRVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVLPET  238 (488)
Q Consensus       159 r~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~lp~~  238 (488)
                      +.+.........+|..+.  ++++.|++.+| .+.. ..+..|.++++|++|+|++|.      +..        ..|..
T Consensus        46 ~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n-~i~~-~~~~~~~~l~~L~~L~Ls~n~------i~~--------i~~~~  107 (440)
T 3zyj_A           46 SKVICVRKNLREVPDGIS--TNTRLLNLHEN-QIQI-IKVNSFKHLRHLEILQLSRNH------IRT--------IEIGA  107 (440)
T ss_dssp             CEEECCSCCCSSCCSCCC--TTCSEEECCSC-CCCE-ECTTTTSSCSSCCEEECCSSC------CCE--------ECGGG
T ss_pred             CEEEeCCCCcCcCCCCCC--CCCcEEEccCC-cCCe-eCHHHhhCCCCCCEEECCCCc------CCc--------cChhh
Confidence            345444455577776553  78999999997 5554 455668899999999999998      442        23456


Q ss_pred             hhhhccCcEeecCCCCCcccCch-hhccccccceeeccCCCCCCCCCCCCCCcccccccCceeecCCCCCCCCcccCccc
Q 038150          239 LCELYNLEKLDISDCFNLKELPE-GIGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGRKACRLES  317 (488)
Q Consensus       239 i~~L~~L~~L~l~~~~~~~~lp~-~l~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~  317 (488)
                      +.++++|++|++++|. +..+|. .+..+++|++|++++|.+....+..+.++++|++|++.++.....      .....
T Consensus       108 ~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~------i~~~~  180 (440)
T 3zyj_A          108 FNGLANLNTLELFDNR-LTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSY------ISEGA  180 (440)
T ss_dssp             GTTCSSCCEEECCSSC-CSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCE------ECTTT
T ss_pred             ccCCccCCEEECCCCc-CCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcce------eCcch
Confidence            7889999999999975 566665 588999999999999985443345688999999999987554331      11234


Q ss_pred             ccCCCcccccccccc--cCCCChhhhhHhhcccCCCCCceeecccCchhhhhhhccccchHHHhhhCCCCCCCCEEEecc
Q 038150          318 LKNLEHLQVCGISRL--GDVSDVGEAKRLELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKELEIEY  395 (488)
Q Consensus       318 l~~L~~L~~L~~~~~--~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~  395 (488)
                      +.++++|+.|.+...  ..++        .+..+++|+.|++++|.+.            ...+..+..+++|+.|++++
T Consensus       181 ~~~l~~L~~L~L~~n~l~~~~--------~~~~l~~L~~L~Ls~N~l~------------~~~~~~~~~l~~L~~L~L~~  240 (440)
T 3zyj_A          181 FEGLSNLRYLNLAMCNLREIP--------NLTPLIKLDELDLSGNHLS------------AIRPGSFQGLMHLQKLWMIQ  240 (440)
T ss_dssp             TTTCSSCCEEECTTSCCSSCC--------CCTTCSSCCEEECTTSCCC------------EECTTTTTTCTTCCEEECTT
T ss_pred             hhcccccCeecCCCCcCcccc--------ccCCCcccCEEECCCCccC------------ccChhhhccCccCCEEECCC
Confidence            566777888777543  3332        3677899999999999875            23357788999999999999


Q ss_pred             ccCCCCCchHHHhccCCcEEeecCCCCCCCCCC-CCCCCCcCeeeecccc
Q 038150          396 YRGNTVFPSWMTSLTNLKSLDLSSCENCEQLPP-LGKLQSLENLHIWRME  444 (488)
Q Consensus       396 ~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~-l~~l~~L~~L~l~~~~  444 (488)
                      |.+....|..+..+++|+.|+|++|......+. +..+++|+.|++++|+
T Consensus       241 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np  290 (440)
T 3zyj_A          241 SQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNP  290 (440)
T ss_dssp             CCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred             CceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCC
Confidence            999885677788999999999999986654444 7889999999999887

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.82  E-value=9.8e-21  Score=177.42  Aligned_cols=222  Identities=15%  Similarity=0.107  Sum_probs=141.5

Q ss_pred             eeeEEEEecCCcCccccccccCcceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccCccCchh
Q 038150          159 RHLMLIFSKAASLPISTLRVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVLPET  238 (488)
Q Consensus       159 r~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~lp~~  238 (488)
                      +.++........+|..+  .+++++|++.+| .+.. ..+..|..+++|++|++++|.      +..        ..|..
T Consensus        14 ~~~~c~~~~l~~ip~~~--~~~l~~L~l~~n-~i~~-~~~~~~~~~~~L~~L~l~~n~------l~~--------~~~~~   75 (285)
T 1ozn_A           14 VTTSCPQQGLQAVPVGI--PAASQRIFLHGN-RISH-VPAASFRACRNLTILWLHSNV------LAR--------IDAAA   75 (285)
T ss_dssp             CEEECCSSCCSSCCTTC--CTTCSEEECTTS-CCCE-ECTTTTTTCTTCCEEECCSSC------CCE--------ECTTT
T ss_pred             eEEEcCcCCcccCCcCC--CCCceEEEeeCC-cCCc-cCHHHcccCCCCCEEECCCCc------cce--------eCHhh
Confidence            34444444556666543  578899999887 5554 455567888999999999988      332        23567


Q ss_pred             hhhhccCcEeecCCCCCcccC-chhhccccccceeeccCCCCCCCCCCCCCCcccccccCceeecCCCCCCCCcccCccc
Q 038150          239 LCELYNLEKLDISDCFNLKEL-PEGIGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGRKACRLES  317 (488)
Q Consensus       239 i~~L~~L~~L~l~~~~~~~~l-p~~l~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~  317 (488)
                      ++.+++|++|++++|..+..+ |..+..+++|++|++++|.+....|..++++++|++|++.+|.+..     .+  ...
T Consensus        76 ~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-----~~--~~~  148 (285)
T 1ozn_A           76 FTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQA-----LP--DDT  148 (285)
T ss_dssp             TTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCC-----CC--TTT
T ss_pred             cCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccc-----cC--HhH
Confidence            788899999999997645655 6678889999999999988665556778889999999888876554     11  112


Q ss_pred             ccCCCcccccccccc--cCCCChhhhhHhhcccCCCCCceeecccCchhhhhhhccccchHHHhhhCCCCCCCCEEEecc
Q 038150          318 LKNLEHLQVCGISRL--GDVSDVGEAKRLELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKELEIEY  395 (488)
Q Consensus       318 l~~L~~L~~L~~~~~--~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~  395 (488)
                      +..+++|+.|.+...  ..++      ...+..+++|+.|++++|.+.            ...+..+..+++|+.|++++
T Consensus       149 ~~~l~~L~~L~l~~n~l~~~~------~~~~~~l~~L~~L~l~~n~l~------------~~~~~~~~~l~~L~~L~l~~  210 (285)
T 1ozn_A          149 FRDLGNLTHLFLHGNRISSVP------ERAFRGLHSLDRLLLHQNRVA------------HVHPHAFRDLGRLMTLYLFA  210 (285)
T ss_dssp             TTTCTTCCEEECCSSCCCEEC------TTTTTTCTTCCEEECCSSCCC------------EECTTTTTTCTTCCEEECCS
T ss_pred             hccCCCccEEECCCCcccccC------HHHhcCccccCEEECCCCccc------------ccCHhHccCcccccEeeCCC
Confidence            344455555544332  1111      123455566666666666553            22244555566666666666


Q ss_pred             ccCCCCCchHHHhccCCcEEeecCCCCC
Q 038150          396 YRGNTVFPSWMTSLTNLKSLDLSSCENC  423 (488)
Q Consensus       396 ~~~~~~lp~~~~~l~~L~~L~l~~~~~~  423 (488)
                      |.+....+..+..+++|+.|++++|+..
T Consensus       211 n~l~~~~~~~~~~l~~L~~L~l~~N~~~  238 (285)
T 1ozn_A          211 NNLSALPTEALAPLRALQYLRLNDNPWV  238 (285)
T ss_dssp             SCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred             CcCCcCCHHHcccCcccCEEeccCCCcc
Confidence            6665522344556666666666666543

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.82  E-value=3.6e-20  Score=190.20  Aligned_cols=126  Identities=19%  Similarity=0.086  Sum_probs=75.8

Q ss_pred             cccCCCCCceeecccCchhhhhhhccccchHHHhhhCCCCCCCCEEEeccccCCCCCchHHHhccCCcEEeecCCCCCCC
Q 038150          346 LDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKELEIEYYRGNTVFPSWMTSLTNLKSLDLSSCENCEQ  425 (488)
Q Consensus       346 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~  425 (488)
                      +..+++|+.|++++|.+...          ......+..+++|+.|++++|.+.. +|..++.+++|++|++++|... .
T Consensus       357 ~~~l~~L~~L~Ls~N~l~~~----------~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~~~~~~~L~~L~Ls~N~l~-~  424 (549)
T 2z81_A          357 KGAWPSLQTLVLSQNHLRSM----------QKTGEILLTLKNLTSLDISRNTFHP-MPDSCQWPEKMRFLNLSSTGIR-V  424 (549)
T ss_dssp             TTSSTTCCEEECTTSCCCCH----------HHHHHHGGGCTTCCEEECTTCCCCC-CCSCCCCCTTCCEEECTTSCCS-C
T ss_pred             hhccccCcEEEccCCccccc----------ccchhhhhcCCCCCEEECCCCCCcc-CChhhcccccccEEECCCCCcc-c
Confidence            66788999999999988533          1122446667788888888887775 7777777777777777777643 2


Q ss_pred             CCC-------------------CCCCCCcCeeeecccccceeeCccccCCCC-------CCCCCCCCCcccccCcccccc
Q 038150          426 LPP-------------------LGKLQSLENLHIWRMESVKRVGDEFLGIES-------DHHGSSSSSSVIIAFPKLKSL  479 (488)
Q Consensus       426 ~~~-------------------l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~-------~~~~~~~~~~~~~~~p~L~~L  479 (488)
                      +|.                   .+.+++|++|++++|. ++.+|... ....       ...-........+.+++|+.|
T Consensus       425 l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~-l~~ip~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  502 (549)
T 2z81_A          425 VKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNK-LKTLPDAS-LFPVLLVMKISRNQLKSVPDGIFDRLTSLQKI  502 (549)
T ss_dssp             CCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSSC-CSSCCCGG-GCTTCCEEECCSSCCCCCCTTGGGGCTTCCEE
T ss_pred             ccchhcCCceEEECCCCChhhhcccCChhcEEECCCCc-cCcCCCcc-cCccCCEEecCCCccCCcCHHHHhcCcccCEE
Confidence            221                   1356777777777774 55555321 0100       000011111124567788888


Q ss_pred             cccccc
Q 038150          480 SIEVLR  485 (488)
Q Consensus       480 ~l~~~p  485 (488)
                      ++.++|
T Consensus       503 ~l~~N~  508 (549)
T 2z81_A          503 WLHTNP  508 (549)
T ss_dssp             ECCSSC
T ss_pred             EecCCC
Confidence            877665

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.82  E-value=4.5e-20  Score=198.60  Aligned_cols=277  Identities=16%  Similarity=0.112  Sum_probs=189.2

Q ss_pred             eeEEEEecCCcCccccccccCcceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccCccC-chh
Q 038150          160 HLMLIFSKAASLPISTLRVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVL-PET  238 (488)
Q Consensus       160 ~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~l-p~~  238 (488)
                      .++.+.+....+|.   ..+++++|++++| .+.. ..+..|.++++|++|+|++|..     +.         .+ |..
T Consensus         8 ~~dcs~~~L~~vP~---lp~~l~~LdLs~N-~i~~-i~~~~~~~l~~L~~LdLs~n~~-----~~---------~i~~~~   68 (844)
T 3j0a_A            8 IAFYRFCNLTQVPQ---VLNTTERLLLSFN-YIRT-VTASSFPFLEQLQLLELGSQYT-----PL---------TIDKEA   68 (844)
T ss_dssp             EEEESCCCSSCCCS---SCTTCCEEEEESC-CCCE-ECSSSCSSCCSCSEEEECTTCC-----CC---------EECTTT
T ss_pred             EEEccCCCCCCCCC---CCCCcCEEECCCC-cCCc-cChhHCcccccCeEEeCCCCCC-----cc---------ccCHHH
Confidence            34444555677786   4689999999998 5655 5566789999999999999964     44         34 567


Q ss_pred             hhhhccCcEeecCCCCCcccCchhhccccccceeeccCCCCCCCCCCC--CCCcccccccCceeecCCCCCCCCcccCcc
Q 038150          239 LCELYNLEKLDISDCFNLKELPEGIGKLINVKHLLNRGTNSLRYMPVG--IGRLTGLRTLGEFHVSAGGGVDGRKACRLE  316 (488)
Q Consensus       239 i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~L~l~~~~~~~~lp~~--i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~  316 (488)
                      ++++++|++|++++|......|..++++++|++|++++|.+...+|..  ++++++|++|++++|.+.+      .....
T Consensus        69 f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~------~~~~~  142 (844)
T 3j0a_A           69 FRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRS------LYLHP  142 (844)
T ss_dssp             TSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCC------CCCCG
T ss_pred             hcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccc------cccch
Confidence            889999999999998755556889999999999999999976666665  8999999999999998765      11224


Q ss_pred             cccCCCcccccccccc--cCCCChhhhhHhhcccC--CC------------------------------CCceeecccCc
Q 038150          317 SLKNLEHLQVCGISRL--GDVSDVGEAKRLELDKK--KY------------------------------LSSLTLWFDKE  362 (488)
Q Consensus       317 ~l~~L~~L~~L~~~~~--~~~~~~~~~~~~~l~~l--~~------------------------------L~~L~l~~~~~  362 (488)
                      .+.++++|+.|.+...  .....      ..+..+  ++                              |+.|++++|.+
T Consensus       143 ~~~~L~~L~~L~Ls~N~i~~~~~------~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l  216 (844)
T 3j0a_A          143 SFGKLNSLKSIDFSSNQIFLVCE------HELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGW  216 (844)
T ss_dssp             GGGTCSSCCEEEEESSCCCCCCS------GGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCS
T ss_pred             hHhhCCCCCEEECCCCcCCeeCH------HHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcC
Confidence            5677888888777543  22211      111111  33                              55555555544


Q ss_pred             hhhhhhhcccc------------------------chHHHhhhCCC--CCCCCEEEeccccCCCCCchHHHhccCCcEEe
Q 038150          363 EEEEGERRKNE------------------------DNQLLLEALRP--PLNLKELEIEYYRGNTVFPSWMTSLTNLKSLD  416 (488)
Q Consensus       363 ~~~~~~~~~~~------------------------~~~~~~~~~~~--~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~  416 (488)
                      ....+......                        ........+..  +++|+.|++++|.+....|..+..+++|+.|+
T Consensus       217 ~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  296 (844)
T 3j0a_A          217 TVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLN  296 (844)
T ss_dssp             STTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEE
T ss_pred             chhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEE
Confidence            32211000000                        00000111111  25788888888877765567777888888888


Q ss_pred             ecCCCCCCCCCC-CCCCCCcCeeeecccccceeeCccccCCCCCCCCCCCCCcccccCccccccccccc
Q 038150          417 LSSCENCEQLPP-LGKLQSLENLHIWRMESVKRVGDEFLGIESDHHGSSSSSSVIIAFPKLKSLSIEVL  484 (488)
Q Consensus       417 l~~~~~~~~~~~-l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~  484 (488)
                      +++|......+. ++.+++|++|++++|. +..++...                .+.+|+|+.|.+.++
T Consensus       297 L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~----------------~~~l~~L~~L~L~~N  348 (844)
T 3j0a_A          297 LAYNKINKIADEAFYGLDNLQVLNLSYNL-LGELYSSN----------------FYGLPKVAYIDLQKN  348 (844)
T ss_dssp             EESCCCCEECTTTTTTCSSCCEEEEESCC-CSCCCSCS----------------CSSCTTCCEEECCSC
T ss_pred             CCCCcCCCCChHHhcCCCCCCEEECCCCC-CCccCHHH----------------hcCCCCCCEEECCCC
Confidence            888886665555 7888888888888886 43332211                456889999988764

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.82  E-value=1.1e-20  Score=194.55  Aligned_cols=129  Identities=17%  Similarity=0.091  Sum_probs=105.5

Q ss_pred             ccceeeEEEEecCCcCccccccccCcceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccCccC
Q 038150          156 EKVRHLMLIFSKAASLPISTLRVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVL  235 (488)
Q Consensus       156 ~~vr~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~l  235 (488)
                      ...+.+++..+....+|..+.  +++++|++++| .+.. ..+..|.++++|++|+|++|.      +..        ..
T Consensus        31 ~~~~~l~ls~~~L~~ip~~~~--~~L~~L~Ls~N-~i~~-~~~~~~~~l~~L~~L~Ls~N~------l~~--------~~   92 (562)
T 3a79_B           31 ELESMVDYSNRNLTHVPKDLP--PRTKALSLSQN-SISE-LRMPDISFLSELRVLRLSHNR------IRS--------LD   92 (562)
T ss_dssp             --CCEEECTTSCCCSCCTTSC--TTCCEEECCSS-CCCC-CCGGGTTTCTTCCEEECCSCC------CCE--------EC
T ss_pred             CCCcEEEcCCCCCccCCCCCC--CCcCEEECCCC-Cccc-cChhhhccCCCccEEECCCCC------CCc--------CC
Confidence            344788888888888887653  89999999998 5655 556679999999999999999      442        33


Q ss_pred             chhhhhhccCcEeecCCCCCcccCchhhccccccceeeccCCCCCC-CCCCCCCCcccccccCceeecCCC
Q 038150          236 PETLCELYNLEKLDISDCFNLKELPEGIGKLINVKHLLNRGTNSLR-YMPVGIGRLTGLRTLGEFHVSAGG  305 (488)
Q Consensus       236 p~~i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~L~l~~~~~~~-~lp~~i~~L~~L~~L~l~~~~~~~  305 (488)
                      |..++++++|++|++++|. +..+|..  .+++|++|++++|.+.. .+|..++++++|++|++.+|.+..
T Consensus        93 ~~~~~~l~~L~~L~Ls~N~-l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~  160 (562)
T 3a79_B           93 FHVFLFNQDLEYLDVSHNR-LQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ  160 (562)
T ss_dssp             TTTTTTCTTCCEEECTTSC-CCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT
T ss_pred             HHHhCCCCCCCEEECCCCc-CCccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCcccc
Confidence            5678899999999999976 6788877  89999999999999544 345789999999999999987764

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.81  E-value=1.4e-19  Score=180.53  Aligned_cols=208  Identities=17%  Similarity=0.120  Sum_probs=145.5

Q ss_pred             ccccccCcceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccCccCchhhhhhccCcEeecCCC
Q 038150          174 STLRVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVLPETLCELYNLEKLDISDC  253 (488)
Q Consensus       174 ~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~lp~~i~~L~~L~~L~l~~~  253 (488)
                      .+.++++|++|++++| .+.+  +| .+..+++|++|++++|.      +.         .+|  ++.+++|++|++++|
T Consensus        37 ~~~~l~~L~~L~Ls~n-~l~~--~~-~l~~l~~L~~L~Ls~n~------l~---------~~~--~~~l~~L~~L~Ls~N   95 (457)
T 3bz5_A           37 SEEQLATLTSLDCHNS-SITD--MT-GIEKLTGLTKLICTSNN------IT---------TLD--LSQNTNLTYLACDSN   95 (457)
T ss_dssp             EHHHHTTCCEEECCSS-CCCC--CT-TGGGCTTCSEEECCSSC------CS---------CCC--CTTCTTCSEEECCSS
T ss_pred             ChhHcCCCCEEEccCC-Cccc--Ch-hhcccCCCCEEEccCCc------CC---------eEc--cccCCCCCEEECcCC
Confidence            5678999999999998 5664  34 48999999999999999      44         444  778999999999997


Q ss_pred             CCcccCchhhccccccceeeccCCCCCCCCCCCCCCcccccccCceeecCCCCCCCCcccCcccccCCCccccccccccc
Q 038150          254 FNLKELPEGIGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGRKACRLESLKNLEHLQVCGISRLG  333 (488)
Q Consensus       254 ~~~~~lp~~l~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~  333 (488)
                      . +..+|  ++++++|++|++++|.+. .+|  ++++++|++|++.+|.+.+     .     .+..+++|+.|.+....
T Consensus        96 ~-l~~~~--~~~l~~L~~L~L~~N~l~-~l~--~~~l~~L~~L~l~~N~l~~-----l-----~l~~l~~L~~L~l~~n~  159 (457)
T 3bz5_A           96 K-LTNLD--VTPLTKLTYLNCDTNKLT-KLD--VSQNPLLTYLNCARNTLTE-----I-----DVSHNTQLTELDCHLNK  159 (457)
T ss_dssp             C-CSCCC--CTTCTTCCEEECCSSCCS-CCC--CTTCTTCCEEECTTSCCSC-----C-----CCTTCTTCCEEECTTCS
T ss_pred             C-Cceee--cCCCCcCCEEECCCCcCC-eec--CCCCCcCCEEECCCCccce-----e-----ccccCCcCCEEECCCCC
Confidence            6 66665  899999999999999854 455  8999999999999887765     1     25566777777776554


Q ss_pred             CCCChhhhhHhhcccCCCCCceeecccCchhhhhhhccccchHHHhhhCCCCCCCCEEEeccccCCCCCchHHHhccCCc
Q 038150          334 DVSDVGEAKRLELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKELEIEYYRGNTVFPSWMTSLTNLK  413 (488)
Q Consensus       334 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~  413 (488)
                      .+..      ..+..+++|+.|++++|.+.+             ++  +..+++|+.|.+++|.+.. ++  ++.+++|+
T Consensus       160 ~~~~------~~~~~l~~L~~L~ls~n~l~~-------------l~--l~~l~~L~~L~l~~N~l~~-~~--l~~l~~L~  215 (457)
T 3bz5_A          160 KITK------LDVTPQTQLTTLDCSFNKITE-------------LD--VSQNKLLNRLNCDTNNITK-LD--LNQNIQLT  215 (457)
T ss_dssp             CCCC------CCCTTCTTCCEEECCSSCCCC-------------CC--CTTCTTCCEEECCSSCCSC-CC--CTTCTTCS
T ss_pred             cccc------cccccCCcCCEEECCCCccce-------------ec--cccCCCCCEEECcCCcCCe-ec--cccCCCCC
Confidence            3332      135566777777777776642             12  4455566666666665554 32  44555666


Q ss_pred             EEeecCCCCCCCCCCCCCCCCcCeeeecccc
Q 038150          414 SLDLSSCENCEQLPPLGKLQSLENLHIWRME  444 (488)
Q Consensus       414 ~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~  444 (488)
                      +|++++|.... +| ++.+++|+.|++++|.
T Consensus       216 ~L~Ls~N~l~~-ip-~~~l~~L~~L~l~~N~  244 (457)
T 3bz5_A          216 FLDCSSNKLTE-ID-VTPLTQLTYFDCSVNP  244 (457)
T ss_dssp             EEECCSSCCSC-CC-CTTCTTCSEEECCSSC
T ss_pred             EEECcCCcccc-cC-ccccCCCCEEEeeCCc
Confidence            66666555433 44 5555556666555554

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.81  E-value=2.7e-20  Score=192.03  Aligned_cols=59  Identities=15%  Similarity=0.175  Sum_probs=26.8

Q ss_pred             ccceeeEEEEecCCcCc-cccccccCcceecccccchhhhhhHHHHHhcCCccceeecCCCc
Q 038150          156 EKVRHLMLIFSKAASLP-ISTLRVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSY  216 (488)
Q Consensus       156 ~~vr~l~l~~~~~~~~~-~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~  216 (488)
                      ..++++++..+....++ ..+.++++|++|++.+| .+.. ..+..|.++++|++|++++|.
T Consensus        52 ~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n-~l~~-~~~~~~~~l~~L~~L~L~~n~  111 (570)
T 2z63_A           52 PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQS-LALGAFSGLSSLQKLVAVETN  111 (570)
T ss_dssp             SSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCCE-ECTTTTTTCTTCCEEECTTSC
T ss_pred             CCceEEECCCCcCCccCcccccCchhCCEEeCcCC-cCCc-cCHhhhcCccccccccccccc
Confidence            34445555444443332 23444555555555554 2322 233344455555555555554

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.80  E-value=2.3e-19  Score=179.49  Aligned_cols=245  Identities=15%  Similarity=0.089  Sum_probs=187.1

Q ss_pred             cceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccCccCchhhhhhccCcEeecCCCCCcccCc
Q 038150          181 MRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVLPETLCELYNLEKLDISDCFNLKELP  260 (488)
Q Consensus       181 Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~lp~~i~~L~~L~~L~l~~~~~~~~lp  260 (488)
                      .+.++..+. .+.  .+|..  -.+++++|+|++|.      +..        ..|..++++++|++|++++|......|
T Consensus        56 ~~~v~c~~~-~l~--~iP~~--~~~~l~~L~L~~n~------i~~--------~~~~~~~~l~~L~~L~Ls~n~i~~~~~  116 (452)
T 3zyi_A           56 FSKVVCTRR-GLS--EVPQG--IPSNTRYLNLMENN------IQM--------IQADTFRHLHHLEVLQLGRNSIRQIEV  116 (452)
T ss_dssp             SCEEECCSS-CCS--SCCSC--CCTTCSEEECCSSC------CCE--------ECTTTTTTCTTCCEEECCSSCCCEECT
T ss_pred             CcEEEECCC-CcC--ccCCC--CCCCccEEECcCCc------Cce--------ECHHHcCCCCCCCEEECCCCccCCcCh
Confidence            456666654 444  24432  23689999999999      442        335678899999999999987544455


Q ss_pred             hhhccccccceeeccCCCCCCCCCCCCCCcccccccCceeecCCCCCCCCcccCcccccCCCcccccccccccCCCChhh
Q 038150          261 EGIGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGRKACRLESLKNLEHLQVCGISRLGDVSDVGE  340 (488)
Q Consensus       261 ~~l~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~~~  340 (488)
                      ..+.++++|++|++++|.+....+..++++++|++|++.+|.+..     .+  ...+.++++|+.|.+..+..+...  
T Consensus       117 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-----~~--~~~~~~l~~L~~L~l~~~~~l~~i--  187 (452)
T 3zyi_A          117 GAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIES-----IP--SYAFNRVPSLMRLDLGELKKLEYI--  187 (452)
T ss_dssp             TTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCE-----EC--TTTTTTCTTCCEEECCCCTTCCEE--
T ss_pred             hhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcce-----eC--HhHHhcCCcccEEeCCCCCCcccc--
Confidence            789999999999999998544334558999999999999987654     11  234567788888887654433321  


Q ss_pred             hhHhhcccCCCCCceeecccCchhhhhhhccccchHHHhhhCCCCCCCCEEEeccccCCCCCchHHHhccCCcEEeecCC
Q 038150          341 AKRLELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKELEIEYYRGNTVFPSWMTSLTNLKSLDLSSC  420 (488)
Q Consensus       341 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~  420 (488)
                       ....+.++++|+.|++++|.+..             + ..+..+++|+.|++++|.+....|..+..+++|+.|++++|
T Consensus       188 -~~~~~~~l~~L~~L~L~~n~l~~-------------~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n  252 (452)
T 3zyi_A          188 -SEGAFEGLFNLKYLNLGMCNIKD-------------M-PNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNS  252 (452)
T ss_dssp             -CTTTTTTCTTCCEEECTTSCCSS-------------C-CCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTS
T ss_pred             -ChhhccCCCCCCEEECCCCcccc-------------c-ccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCC
Confidence             12357788999999999998742             2 35788899999999999999866889999999999999999


Q ss_pred             CCCCCCCC-CCCCCCcCeeeecccccceeeCccccCCCCCCCCCCCCCcccccCcccccccccccc
Q 038150          421 ENCEQLPP-LGKLQSLENLHIWRMESVKRVGDEFLGIESDHHGSSSSSSVIIAFPKLKSLSIEVLR  485 (488)
Q Consensus       421 ~~~~~~~~-l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~p  485 (488)
                      ......+. +..+++|+.|++++|. ++.++.+.                .+.+++|+.|.+.++|
T Consensus       253 ~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~----------------~~~l~~L~~L~L~~Np  301 (452)
T 3zyi_A          253 QVSLIERNAFDGLASLVELNLAHNN-LSSLPHDL----------------FTPLRYLVELHLHHNP  301 (452)
T ss_dssp             CCCEECTTTTTTCTTCCEEECCSSC-CSCCCTTS----------------STTCTTCCEEECCSSC
T ss_pred             cCceECHHHhcCCCCCCEEECCCCc-CCccChHH----------------hccccCCCEEEccCCC
Confidence            97766565 8899999999999986 67776543                3458899999998876

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.80  E-value=2.3e-20  Score=180.49  Aligned_cols=250  Identities=18%  Similarity=0.166  Sum_probs=165.3

Q ss_pred             ccceeeEEEEecCCcCcc-ccccccCcceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccCcc
Q 038150          156 EKVRHLMLIFSKAASLPI-STLRVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLV  234 (488)
Q Consensus       156 ~~vr~l~l~~~~~~~~~~-~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~  234 (488)
                      ..++++++..+....++. .+..+++|++|++.+| .+.. ..+..|.++++|++|++++|.      +.         .
T Consensus        52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~-~~~~~~~~l~~L~~L~Ls~n~------l~---------~  114 (353)
T 2z80_A           52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSN-GINT-IEEDSFSSLGSLEHLDLSYNY------LS---------N  114 (353)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-CCCE-ECTTTTTTCTTCCEEECCSSC------CS---------S
T ss_pred             ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCC-ccCc-cCHhhcCCCCCCCEEECCCCc------CC---------c
Confidence            467777777777766655 5677788888888876 4544 445557778888888888887      44         3


Q ss_pred             Cchh-hhhhccCcEeecCCCCCcccCch--hhccccccceeeccCCCCCCCC-CCCCCCcccccccCceeecCCCCCCCC
Q 038150          235 LPET-LCELYNLEKLDISDCFNLKELPE--GIGKLINVKHLLNRGTNSLRYM-PVGIGRLTGLRTLGEFHVSAGGGVDGR  310 (488)
Q Consensus       235 lp~~-i~~L~~L~~L~l~~~~~~~~lp~--~l~~L~~L~~L~l~~~~~~~~l-p~~i~~L~~L~~L~l~~~~~~~~~~~~  310 (488)
                      +|.. ++++++|++|++++|. +..+|.  .++.+++|++|++++|.....+ |..++++++|++|++.+|.+.+     
T Consensus       115 ~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~-----  188 (353)
T 2z80_A          115 LSSSWFKPLSSLTFLNLLGNP-YKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQS-----  188 (353)
T ss_dssp             CCHHHHTTCTTCSEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE-----
T ss_pred             CCHhHhCCCccCCEEECCCCC-CcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCc-----
Confidence            4444 6778888888888864 556665  5677888888888877434444 4567788888888887776553     


Q ss_pred             cccCcccccCCCcccccccccccCCCChhhhhHhhcccCCCCCceeecccCchhhhhhhccccchHHHhhhCCCCCCCCE
Q 038150          311 KACRLESLKNLEHLQVCGISRLGDVSDVGEAKRLELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKE  390 (488)
Q Consensus       311 ~~~~~~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~  390 (488)
                        .....+.++++|+.|.+....- ...   ....+..+++|+.|++++|.+.+...        .. .......+.++.
T Consensus       189 --~~~~~l~~l~~L~~L~l~~n~l-~~~---~~~~~~~~~~L~~L~L~~n~l~~~~~--------~~-l~~~~~~~~l~~  253 (353)
T 2z80_A          189 --YEPKSLKSIQNVSHLILHMKQH-ILL---LEIFVDVTSSVECLELRDTDLDTFHF--------SE-LSTGETNSLIKK  253 (353)
T ss_dssp             --ECTTTTTTCSEEEEEEEECSCS-TTH---HHHHHHHTTTEEEEEEESCBCTTCCC--------C-------CCCCCCE
T ss_pred             --cCHHHHhccccCCeecCCCCcc-ccc---hhhhhhhcccccEEECCCCccccccc--------cc-cccccccchhhc
Confidence              1223455666777766654332 111   11233456778888888887643210        00 111233556777


Q ss_pred             EEeccccCCC----CCchHHHhccCCcEEeecCCCCCCCCCC--CCCCCCcCeeeecccc
Q 038150          391 LEIEYYRGNT----VFPSWMTSLTNLKSLDLSSCENCEQLPP--LGKLQSLENLHIWRME  444 (488)
Q Consensus       391 L~l~~~~~~~----~lp~~~~~l~~L~~L~l~~~~~~~~~~~--l~~l~~L~~L~l~~~~  444 (488)
                      +.+.++.+..    .+|.++..+++|++|++++|... .+|.  ++.+++|++|++++|+
T Consensus       254 l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~  312 (353)
T 2z80_A          254 FTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNP  312 (353)
T ss_dssp             EEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSC
T ss_pred             cccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCC
Confidence            7777765543    26778888999999999999865 5665  5889999999999887

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.80  E-value=4.6e-20  Score=178.41  Aligned_cols=232  Identities=15%  Similarity=0.117  Sum_probs=105.6

Q ss_pred             cccceeeEEEEecCCcCc-cccccccCcceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccCc
Q 038150          155 DEKVRHLMLIFSKAASLP-ISTLRVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKL  233 (488)
Q Consensus       155 ~~~vr~l~l~~~~~~~~~-~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l  233 (488)
                      ...++.+++..+....++ ..+..+++|++|++++| .+.. ..+..+.++++|++|++++|.      +.         
T Consensus        75 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~-~~~~~~~~l~~L~~L~L~~n~------l~---------  137 (353)
T 2z80_A           75 CVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYN-YLSN-LSSSWFKPLSSLTFLNLLGNP------YK---------  137 (353)
T ss_dssp             CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCSS-CCHHHHTTCTTCSEEECTTCC------CS---------
T ss_pred             CCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCC-cCCc-CCHhHhCCCccCCEEECCCCC------Cc---------
Confidence            344555555555444432 23455555555555554 3332 333335555555555555555      33         


Q ss_pred             cCch--hhhhhccCcEeecCCCCCcccC-chhhccccccceeeccCCCCCCCCCCCCCCcccccccCceeecCCCCCCCC
Q 038150          234 VLPE--TLCELYNLEKLDISDCFNLKEL-PEGIGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGR  310 (488)
Q Consensus       234 ~lp~--~i~~L~~L~~L~l~~~~~~~~l-p~~l~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~  310 (488)
                      .+|.  .++.+++|++|++++|..+..+ |..++.+++|++|++++|.+....|..++++++|++|++.+|....     
T Consensus       138 ~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~-----  212 (353)
T 2z80_A          138 TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHIL-----  212 (353)
T ss_dssp             SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTT-----
T ss_pred             ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCcccc-----
Confidence            2222  3445555555555555333333 3345555555555555555444444555555555555555554322     


Q ss_pred             cccCcccccCCCccccccccccc--CCCChhhhhHhhcccCCCCCceeecccCchhhhhhhccccchHHHhhhCCCCCCC
Q 038150          311 KACRLESLKNLEHLQVCGISRLG--DVSDVGEAKRLELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNL  388 (488)
Q Consensus       311 ~~~~~~~l~~L~~L~~L~~~~~~--~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L  388 (488)
                      .+.  .....+++|+.|.+....  ..+.   ...........++.+++..+.+.+..        ...+|.++..+++|
T Consensus       213 ~~~--~~~~~~~~L~~L~L~~n~l~~~~~---~~l~~~~~~~~l~~l~L~~~~l~~~~--------l~~l~~~l~~l~~L  279 (353)
T 2z80_A          213 LLE--IFVDVTSSVECLELRDTDLDTFHF---SELSTGETNSLIKKFTFRNVKITDES--------LFQVMKLLNQISGL  279 (353)
T ss_dssp             HHH--HHHHHTTTEEEEEEESCBCTTCCC---C------CCCCCCEEEEESCBCCHHH--------HHHHHHHHHTCTTC
T ss_pred             chh--hhhhhcccccEEECCCCccccccc---cccccccccchhhccccccccccCcc--------hhhhHHHHhcccCC
Confidence            111  011223444444443221  1110   00011222344455555555443221        13344555555555


Q ss_pred             CEEEeccccCCCCCchHH-HhccCCcEEeecCCCC
Q 038150          389 KELEIEYYRGNTVFPSWM-TSLTNLKSLDLSSCEN  422 (488)
Q Consensus       389 ~~L~l~~~~~~~~lp~~~-~~l~~L~~L~l~~~~~  422 (488)
                      +.|++++|.+.. +|.++ +.+++|++|++++|+.
T Consensus       280 ~~L~Ls~N~l~~-i~~~~~~~l~~L~~L~L~~N~~  313 (353)
T 2z80_A          280 LELEFSRNQLKS-VPDGIFDRLTSLQKIWLHTNPW  313 (353)
T ss_dssp             CEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCB
T ss_pred             CEEECCCCCCCc-cCHHHHhcCCCCCEEEeeCCCc
Confidence            555555555554 54443 4555555555555543

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.80  E-value=2.9e-20  Score=191.79  Aligned_cols=252  Identities=19%  Similarity=0.155  Sum_probs=159.0

Q ss_pred             ccccceeeEEEEecCCcCc-cccccccCcceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccC
Q 038150          154 LDEKVRHLMLIFSKAASLP-ISTLRVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEK  232 (488)
Q Consensus       154 ~~~~vr~l~l~~~~~~~~~-~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~  232 (488)
                      ....++++++..+....++ ..+..+++|++|++++| .+.. ..+..|.++++|++|+|++|.      +..+      
T Consensus        26 l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~i~~-i~~~~~~~l~~L~~L~L~~n~------l~~~------   91 (570)
T 2z63_A           26 LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQT-IEDGAYQSLSHLSTLILTGNP------IQSL------   91 (570)
T ss_dssp             SCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTC-CCCE-ECTTTTTTCTTCCEEECTTCC------CCEE------
T ss_pred             ccccccEEEccCCccCccChhHhhCCCCceEEECCCC-cCCc-cCcccccCchhCCEEeCcCCc------CCcc------
Confidence            3467899999998887664 46889999999999998 5655 556678999999999999998      4432      


Q ss_pred             ccCchhhhhhccCcEeecCCCCCcccCch-hhccccccceeeccCCCCCC-CCCCCCCCcccccccCceeecCCCCCCCC
Q 038150          233 LVLPETLCELYNLEKLDISDCFNLKELPE-GIGKLINVKHLLNRGTNSLR-YMPVGIGRLTGLRTLGEFHVSAGGGVDGR  310 (488)
Q Consensus       233 l~lp~~i~~L~~L~~L~l~~~~~~~~lp~-~l~~L~~L~~L~l~~~~~~~-~lp~~i~~L~~L~~L~l~~~~~~~~~~~~  310 (488)
                        .|..++++++|++|++++|. +..+|. .++++++|++|++++|.+.. .+|..++++++|++|++.+|.+....   
T Consensus        92 --~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~---  165 (570)
T 2z63_A           92 --ALGAFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY---  165 (570)
T ss_dssp             --CTTTTTTCTTCCEEECTTSC-CCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEEC---
T ss_pred             --CHhhhcCccccccccccccc-cccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceec---
Confidence              23556777778888887764 555544 47777778888887776443 35777777777777777766554311   


Q ss_pred             cccCcccccCCC------------------------ccccccccccc---------------------------------
Q 038150          311 KACRLESLKNLE------------------------HLQVCGISRLG---------------------------------  333 (488)
Q Consensus       311 ~~~~~~~l~~L~------------------------~L~~L~~~~~~---------------------------------  333 (488)
                       +..+..+.+++                        +|+.+.+....                                 
T Consensus       166 -~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~  244 (570)
T 2z63_A          166 -CTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLE  244 (570)
T ss_dssp             -GGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCE
T ss_pred             -HHHccchhccchhhhhcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhh
Confidence             11122222221                        12222211100                                 


Q ss_pred             CCC---------------------ChhhhhHhhcccCCCCCceeecccCchhhhhhhccccchHHHhhhCCCCCCCCEEE
Q 038150          334 DVS---------------------DVGEAKRLELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKELE  392 (488)
Q Consensus       334 ~~~---------------------~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~  392 (488)
                      .++                     ......+..+..+++|+.|+++++.+             ..+|..+..+ +|+.|+
T Consensus       245 ~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l-------------~~l~~~~~~~-~L~~L~  310 (570)
T 2z63_A          245 KFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTI-------------ERVKDFSYNF-GWQHLE  310 (570)
T ss_dssp             ECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEE-------------CSCCBCCSCC-CCSEEE
T ss_pred             hcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccc-------------hhhhhhhccC-CccEEe
Confidence            000                     00011123445567777777777765             2345566666 777777


Q ss_pred             eccccCCCCCchHHHhccCCcEEeecCCCCCCCCCCCCCCCCcCeeeecccc
Q 038150          393 IEYYRGNTVFPSWMTSLTNLKSLDLSSCENCEQLPPLGKLQSLENLHIWRME  444 (488)
Q Consensus       393 l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~  444 (488)
                      +++|.+.. +|.  ..+++|++|++++|......+. ..+++|++|++++|.
T Consensus       311 l~~n~~~~-l~~--~~l~~L~~L~l~~n~~~~~~~~-~~~~~L~~L~l~~n~  358 (570)
T 2z63_A          311 LVNCKFGQ-FPT--LKLKSLKRLTFTSNKGGNAFSE-VDLPSLEFLDLSRNG  358 (570)
T ss_dssp             EESCBCSS-CCB--CBCSSCCEEEEESCBSCCBCCC-CBCTTCCEEECCSSC
T ss_pred             eccCcccc-cCc--ccccccCEEeCcCCcccccccc-ccCCCCCEEeCcCCc
Confidence            77777765 665  3566777777777665544443 566777777776665

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.80  E-value=2.9e-19  Score=188.28  Aligned_cols=255  Identities=18%  Similarity=0.101  Sum_probs=171.8

Q ss_pred             eEEEEecCCcCccccccccCcceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccCccCchhhh
Q 038150          161 LMLIFSKAASLPISTLRVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVLPETLC  240 (488)
Q Consensus       161 l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~lp~~i~  240 (488)
                      ++........+|..+.  +++++|++++| .+.. ..+..|.++++|++|++++|.+     .+         ..|..++
T Consensus         9 ~~cs~~~L~~ip~~~~--~~l~~L~Ls~n-~l~~-~~~~~~~~l~~L~~L~Ls~n~l-----~~---------~~~~~~~   70 (680)
T 1ziw_A            9 ADCSHLKLTQVPDDLP--TNITVLNLTHN-QLRR-LPAANFTRYSQLTSLDVGFNTI-----SK---------LEPELCQ   70 (680)
T ss_dssp             EECCSSCCSSCCSCSC--TTCSEEECCSS-CCCC-CCGGGGGGGTTCSEEECCSSCC-----CC---------CCTTHHH
T ss_pred             eECCCCCccccccccC--CCCcEEECCCC-CCCC-cCHHHHhCCCcCcEEECCCCcc-----Cc---------cCHHHHh
Confidence            4444445567776553  79999999998 5655 5566689999999999999984     33         4467899


Q ss_pred             hhccCcEeecCCCCCcccCch-hhccccccceeeccCCCCCCCCCCCCCCcccccccCceeecCCCCCCCCcccCccccc
Q 038150          241 ELYNLEKLDISDCFNLKELPE-GIGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGRKACRLESLK  319 (488)
Q Consensus       241 ~L~~L~~L~l~~~~~~~~lp~-~l~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~  319 (488)
                      ++++|++|++++|. +..+|. .++++++|++|++++|.+....|..++++++|++|++.+|.+.+.       ....+.
T Consensus        71 ~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-------~~~~~~  142 (680)
T 1ziw_A           71 KLPMLKVLNLQHNE-LSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSST-------KLGTQV  142 (680)
T ss_dssp             HCTTCCEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCC-------CCCSSS
T ss_pred             cccCcCEEECCCCc-cCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCccccc-------Cchhhc
Confidence            99999999999976 667776 589999999999999986554456799999999999999877652       233456


Q ss_pred             CCCcccccccccccCCCChhhhhHhhcccCCCCCceeecccCchhhhhhh------------ccccch----HHHhhhCC
Q 038150          320 NLEHLQVCGISRLGDVSDVGEAKRLELDKKKYLSSLTLWFDKEEEEEGER------------RKNEDN----QLLLEALR  383 (488)
Q Consensus       320 ~L~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~------------~~~~~~----~~~~~~~~  383 (488)
                      ++++|+.|.+....-.......  .....+++|+.|++++|.+.+..+..            ..+...    ..++..+ 
T Consensus       143 ~l~~L~~L~L~~n~l~~~~~~~--~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l-  219 (680)
T 1ziw_A          143 QLENLQELLLSNNKIQALKSEE--LDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLEL-  219 (680)
T ss_dssp             CCTTCCEEECCSSCCCCBCHHH--HGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHH-
T ss_pred             ccccCCEEEccCCcccccCHHH--hhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHh-
Confidence            7778888777543211110000  11224577888888887664332110            000000    1111111 


Q ss_pred             CCCCCCEEEeccccCCCCCchHHHhccC--CcEEeecCCCCCCCCCC-CCCCCCcCeeeecccc
Q 038150          384 PPLNLKELEIEYYRGNTVFPSWMTSLTN--LKSLDLSSCENCEQLPP-LGKLQSLENLHIWRME  444 (488)
Q Consensus       384 ~~~~L~~L~l~~~~~~~~lp~~~~~l~~--L~~L~l~~~~~~~~~~~-l~~l~~L~~L~l~~~~  444 (488)
                      ..++|+.|++++|.+....|.++..++.  |+.|++++|......+. ++.+++|++|++++|.
T Consensus       220 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~  283 (680)
T 1ziw_A          220 ANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNN  283 (680)
T ss_dssp             TTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCC
T ss_pred             hhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCc
Confidence            2356777777777776655666666543  88888877775554444 7777778888777775

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.79  E-value=6.1e-21  Score=181.17  Aligned_cols=247  Identities=16%  Similarity=0.137  Sum_probs=178.7

Q ss_pred             cceeeEEEEecCCcCccccccccCcceecccccchhhhhhHHHHHh-------cCCccceeecCCCcccccccCCccccc
Q 038150          157 KVRHLMLIFSKAASLPISTLRVKRMRTLLINDHSLLNAAILEELFR-------ELTSLRALDFGGSYHSTRLLTPEVPRN  229 (488)
Q Consensus       157 ~vr~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~-------~l~~Lr~L~Ls~~~~~~~~~~~~lp~~  229 (488)
                      .++.+.++.+.. .+|..+...  |++|++.+|..-.. .++..+.       ++++|++|++++|.+     .+     
T Consensus        44 ~L~~l~l~~n~l-~~p~~~~~~--L~~L~L~~n~l~~~-~~~~~~~~~~~~~~~l~~L~~L~L~~n~l-----~~-----  109 (312)
T 1wwl_A           44 SLEYLLKRVDTE-ADLGQFTDI--IKSLSLKRLTVRAA-RIPSRILFGALRVLGISGLQELTLENLEV-----TG-----  109 (312)
T ss_dssp             ECTTHHHHCCTT-CCCHHHHHH--HHHCCCCEEEEEEE-ECBHHHHHHHHHHHTTSCCCEEEEEEEBC-----BS-----
T ss_pred             CceeEeeccccc-ccHHHHHHH--HhhcccccccccCC-CcCHHHHHHHHHhcCcCCccEEEccCCcc-----cc-----
Confidence            444555555555 556655443  88888888732122 2333333       789999999999985     44     


Q ss_pred             ccCccCchhh--hhhccCcEeecCCCCCcccCchhhccc-----cccceeeccCCCCCCCCCCCCCCcccccccCceeec
Q 038150          230 IEKLVLPETL--CELYNLEKLDISDCFNLKELPEGIGKL-----INVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFHVS  302 (488)
Q Consensus       230 i~~l~lp~~i--~~L~~L~~L~l~~~~~~~~lp~~l~~L-----~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~  302 (488)
                          .+|..+  +.+++|++|++++|. +..+|..++.+     ++|++|++++|.+....|..++++++|++|++++|.
T Consensus       110 ----~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~  184 (312)
T 1wwl_A          110 ----TAPPPLLEATGPDLNILNLRNVS-WATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNP  184 (312)
T ss_dssp             ----CCCCCSSSCCSCCCSEEEEESCB-CSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCT
T ss_pred             ----hhHHHHHHhcCCCccEEEccCCC-CcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCC
Confidence                445554  788999999999976 55558888877     899999999999666555789999999999999887


Q ss_pred             CCCCCCCCcccCcccc--cCCCcccccccccccCCCChhhhhHhhcccCCCCCceeecccCchhhhhhhccccchHHHh-
Q 038150          303 AGGGVDGRKACRLESL--KNLEHLQVCGISRLGDVSDVGEAKRLELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLL-  379 (488)
Q Consensus       303 ~~~~~~~~~~~~~~~l--~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~-  379 (488)
                      ..+     ....+..+  ..+++|+.|.+.... +..........+..+++|+.|++++|.+.+.            .+ 
T Consensus       185 l~~-----~~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~------------~~~  246 (312)
T 1wwl_A          185 ELG-----ERGLISALCPLKFPTLQVLALRNAG-METPSGVCSALAAARVQLQGLDLSHNSLRDA------------AGA  246 (312)
T ss_dssp             TCH-----HHHHHHHSCTTSCTTCCEEECTTSC-CCCHHHHHHHHHHTTCCCSEEECTTSCCCSS------------CCC
T ss_pred             cCc-----chHHHHHHHhccCCCCCEEECCCCc-CcchHHHHHHHHhcCCCCCEEECCCCcCCcc------------cch
Confidence            543     11112233  677888888886543 2222233334456789999999999988532            12 


Q ss_pred             hhCCCCCCCCEEEeccccCCCCCchHHHhccCCcEEeecCCCCCCCCCCCCCCCCcCeeeecccc
Q 038150          380 EALRPPLNLKELEIEYYRGNTVFPSWMTSLTNLKSLDLSSCENCEQLPPLGKLQSLENLHIWRME  444 (488)
Q Consensus       380 ~~~~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~  444 (488)
                      ..+..+++|+.|++++|.+.. +|.++.  ++|++|++++|.... +|.+..+++|++|++++|+
T Consensus       247 ~~~~~l~~L~~L~Ls~N~l~~-ip~~~~--~~L~~L~Ls~N~l~~-~p~~~~l~~L~~L~L~~N~  307 (312)
T 1wwl_A          247 PSCDWPSQLNSLNLSFTGLKQ-VPKGLP--AKLSVLDLSYNRLDR-NPSPDELPQVGNLSLKGNP  307 (312)
T ss_dssp             SCCCCCTTCCEEECTTSCCSS-CCSSCC--SEEEEEECCSSCCCS-CCCTTTSCEEEEEECTTCT
T ss_pred             hhhhhcCCCCEEECCCCccCh-hhhhcc--CCceEEECCCCCCCC-ChhHhhCCCCCEEeccCCC
Confidence            345567899999999999986 888775  899999999998554 4668899999999999886

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.79  E-value=5.5e-19  Score=176.05  Aligned_cols=244  Identities=15%  Similarity=0.121  Sum_probs=186.4

Q ss_pred             cceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccCccCchhhhhhccCcEeecCCCCCcccCc
Q 038150          181 MRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVLPETLCELYNLEKLDISDCFNLKELP  260 (488)
Q Consensus       181 Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~lp~~i~~L~~L~~L~l~~~~~~~~lp  260 (488)
                      .+.++..+. .+.  .+|..  -.+++++|+|++|.      +..+        .+..+.++++|++|++++|......|
T Consensus        45 ~~~v~c~~~-~l~--~iP~~--~~~~l~~L~L~~n~------i~~~--------~~~~~~~l~~L~~L~Ls~n~i~~i~~  105 (440)
T 3zyj_A           45 FSKVICVRK-NLR--EVPDG--ISTNTRLLNLHENQ------IQII--------KVNSFKHLRHLEILQLSRNHIRTIEI  105 (440)
T ss_dssp             SCEEECCSC-CCS--SCCSC--CCTTCSEEECCSCC------CCEE--------CTTTTSSCSSCCEEECCSSCCCEECG
T ss_pred             CCEEEeCCC-CcC--cCCCC--CCCCCcEEEccCCc------CCee--------CHHHhhCCCCCCEEECCCCcCCccCh
Confidence            456666664 444  34432  23789999999999      4432        23578899999999999987444455


Q ss_pred             hhhccccccceeeccCCCCCCCCC-CCCCCcccccccCceeecCCCCCCCCcccCcccccCCCcccccccccccCCCChh
Q 038150          261 EGIGKLINVKHLLNRGTNSLRYMP-VGIGRLTGLRTLGEFHVSAGGGVDGRKACRLESLKNLEHLQVCGISRLGDVSDVG  339 (488)
Q Consensus       261 ~~l~~L~~L~~L~l~~~~~~~~lp-~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~~  339 (488)
                      ..+..+++|++|++++|.+. .+| ..+.++++|++|++.+|.+..     .  ....+.++++|+.|.+.....+... 
T Consensus       106 ~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~N~i~~-----~--~~~~~~~l~~L~~L~l~~~~~l~~i-  176 (440)
T 3zyj_A          106 GAFNGLANLNTLELFDNRLT-TIPNGAFVYLSKLKELWLRNNPIES-----I--PSYAFNRIPSLRRLDLGELKRLSYI-  176 (440)
T ss_dssp             GGGTTCSSCCEEECCSSCCS-SCCTTTSCSCSSCCEEECCSCCCCE-----E--CTTTTTTCTTCCEEECCCCTTCCEE-
T ss_pred             hhccCCccCCEEECCCCcCC-eeCHhHhhccccCceeeCCCCcccc-----c--CHHHhhhCcccCEeCCCCCCCccee-
Confidence            77899999999999999854 555 468999999999999987654     1  1234567788888887654433321 


Q ss_pred             hhhHhhcccCCCCCceeecccCchhhhhhhccccchHHHhhhCCCCCCCCEEEeccccCCCCCchHHHhccCCcEEeecC
Q 038150          340 EAKRLELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKELEIEYYRGNTVFPSWMTSLTNLKSLDLSS  419 (488)
Q Consensus       340 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~  419 (488)
                        ....+.++++|+.|++++|.+..             +| .+..+++|+.|+|++|.+....|..+..+++|++|++++
T Consensus       177 --~~~~~~~l~~L~~L~L~~n~l~~-------------~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~  240 (440)
T 3zyj_A          177 --SEGAFEGLSNLRYLNLAMCNLRE-------------IP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQ  240 (440)
T ss_dssp             --CTTTTTTCSSCCEEECTTSCCSS-------------CC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTT
T ss_pred             --CcchhhcccccCeecCCCCcCcc-------------cc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCC
Confidence              12457789999999999998742             23 578889999999999999885688899999999999999


Q ss_pred             CCCCCCCCC-CCCCCCcCeeeecccccceeeCccccCCCCCCCCCCCCCcccccCcccccccccccc
Q 038150          420 CENCEQLPP-LGKLQSLENLHIWRMESVKRVGDEFLGIESDHHGSSSSSSVIIAFPKLKSLSIEVLR  485 (488)
Q Consensus       420 ~~~~~~~~~-l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~p  485 (488)
                      |......+. +..+++|+.|+|++|. ++.++...                ...+++|+.|.+.++|
T Consensus       241 n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~----------------~~~l~~L~~L~L~~Np  290 (440)
T 3zyj_A          241 SQIQVIERNAFDNLQSLVEINLAHNN-LTLLPHDL----------------FTPLHHLERIHLHHNP  290 (440)
T ss_dssp             CCCCEECTTSSTTCTTCCEEECTTSC-CCCCCTTT----------------TSSCTTCCEEECCSSC
T ss_pred             CceeEEChhhhcCCCCCCEEECCCCC-CCccChhH----------------hccccCCCEEEcCCCC
Confidence            987666555 8899999999999986 77776543                3458899999998765

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.79  E-value=1.2e-19  Score=171.90  Aligned_cols=244  Identities=18%  Similarity=0.096  Sum_probs=183.1

Q ss_pred             ceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccCccCchh-hhhhccCcEeecCCCCCcccC-
Q 038150          182 RTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVLPET-LCELYNLEKLDISDCFNLKEL-  259 (488)
Q Consensus       182 r~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~lp~~-i~~L~~L~~L~l~~~~~~~~l-  259 (488)
                      +.+++.++ .+.  .+|.  .-.++|++|++++|.      +.         .+|.. ++++++|++|++++|. +..+ 
T Consensus        10 ~~l~c~~~-~l~--~ip~--~~~~~l~~L~L~~n~------l~---------~i~~~~~~~l~~L~~L~L~~n~-l~~~~   68 (306)
T 2z66_A           10 TEIRCNSK-GLT--SVPT--GIPSSATRLELESNK------LQ---------SLPHGVFDKLTQLTKLSLSSNG-LSFKG   68 (306)
T ss_dssp             TEEECCSS-CCS--SCCS--CCCTTCCEEECCSSC------CC---------CCCTTTTTTCTTCSEEECCSSC-CCEEE
T ss_pred             CEEEcCCC-Ccc--cCCC--CCCCCCCEEECCCCc------cC---------ccCHhHhhccccCCEEECCCCc-cCccc
Confidence            45666664 344  2443  234689999999999      55         44444 5789999999999976 4433 


Q ss_pred             --chhhccccccceeeccCCCCCCCCCCCCCCcccccccCceeecCCCCCCCCcccCcccccCCCcccccccccccCCCC
Q 038150          260 --PEGIGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGRKACRLESLKNLEHLQVCGISRLGDVSD  337 (488)
Q Consensus       260 --p~~l~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~  337 (488)
                        |..+..+++|++|++++|. ...+|..+.++++|++|++.+|.+..      ......+..+++|+.|.+....-.  
T Consensus        69 ~~~~~~~~~~~L~~L~Ls~n~-i~~l~~~~~~l~~L~~L~l~~n~l~~------~~~~~~~~~l~~L~~L~l~~n~l~--  139 (306)
T 2z66_A           69 CCSQSDFGTTSLKYLDLSFNG-VITMSSNFLGLEQLEHLDFQHSNLKQ------MSEFSVFLSLRNLIYLDISHTHTR--  139 (306)
T ss_dssp             EEEHHHHSCSCCCEEECCSCS-EEEEEEEEETCTTCCEEECTTSEEES------STTTTTTTTCTTCCEEECTTSCCE--
T ss_pred             CcccccccccccCEEECCCCc-cccChhhcCCCCCCCEEECCCCcccc------cccchhhhhccCCCEEECCCCcCC--
Confidence              6778889999999999998 45678789999999999999887665      112245667788888887654321  


Q ss_pred             hhhhhHhhcccCCCCCceeecccCchhhhhhhccccchHHHhhhCCCCCCCCEEEeccccCCCCCchHHHhccCCcEEee
Q 038150          338 VGEAKRLELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKELEIEYYRGNTVFPSWMTSLTNLKSLDL  417 (488)
Q Consensus       338 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l  417 (488)
                        ...+..+..+++|+.|++++|.+..           ...|..+..+++|+.|++++|.+....|.++..+++|++|++
T Consensus       140 --~~~~~~~~~l~~L~~L~l~~n~l~~-----------~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  206 (306)
T 2z66_A          140 --VAFNGIFNGLSSLEVLKMAGNSFQE-----------NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM  206 (306)
T ss_dssp             --ECSTTTTTTCTTCCEEECTTCEEGG-----------GEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred             --ccchhhcccCcCCCEEECCCCcccc-----------ccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEEC
Confidence              1123457788999999999998742           135678899999999999999998855888999999999999


Q ss_pred             cCCCCCCCCCC-CCCCCCcCeeeecccccceeeCccccCCCCCCCCCCCCCcccccCc-ccccccccccc
Q 038150          418 SSCENCEQLPP-LGKLQSLENLHIWRMESVKRVGDEFLGIESDHHGSSSSSSVIIAFP-KLKSLSIEVLR  485 (488)
Q Consensus       418 ~~~~~~~~~~~-l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~L~~L~l~~~p  485 (488)
                      ++|......+. +..+++|+.|++++|. +...+...                ...+| +|++|++.++|
T Consensus       207 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~----------------~~~~~~~L~~L~L~~N~  259 (306)
T 2z66_A          207 SHNNFFSLDTFPYKCLNSLQVLDYSLNH-IMTSKKQE----------------LQHFPSSLAFLNLTQND  259 (306)
T ss_dssp             TTSCCSBCCSGGGTTCTTCCEEECTTSC-CCBCSSSS----------------CCCCCTTCCEEECTTCC
T ss_pred             CCCccCccChhhccCcccCCEeECCCCC-CcccCHHH----------------HHhhhccCCEEEccCCC
Confidence            99986654443 8889999999999997 44433221                33464 89999998765

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.78  E-value=6.3e-20  Score=174.15  Aligned_cols=250  Identities=16%  Similarity=0.107  Sum_probs=185.7

Q ss_pred             cccccCcceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccCccCchhhh-------hhccCcE
Q 038150          175 TLRVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVLPETLC-------ELYNLEK  247 (488)
Q Consensus       175 ~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~lp~~i~-------~L~~L~~  247 (488)
                      ++..++|++|++.+|. + .  +|..+...  |++|++++|.+      ...       .+|..+.       ++++|++
T Consensus        39 ~~~~~~L~~l~l~~n~-l-~--~p~~~~~~--L~~L~L~~n~l------~~~-------~~~~~~~~~~~~~~~l~~L~~   99 (312)
T 1wwl_A           39 YGGGRSLEYLLKRVDT-E-A--DLGQFTDI--IKSLSLKRLTV------RAA-------RIPSRILFGALRVLGISGLQE   99 (312)
T ss_dssp             EEEEEECTTHHHHCCT-T-C--CCHHHHHH--HHHCCCCEEEE------EEE-------ECBHHHHHHHHHHHTTSCCCE
T ss_pred             EccCCCceeEeecccc-c-c--cHHHHHHH--Hhhcccccccc------cCC-------CcCHHHHHHHHHhcCcCCccE
Confidence            3456889999999874 4 2  33333333  99999999983      222       4666665       7999999


Q ss_pred             eecCCCCCcccCchhh--ccccccceeeccCCCCCCCCCCCCCCc-----ccccccCceeecCCCCCCCCcccCcccccC
Q 038150          248 LDISDCFNLKELPEGI--GKLINVKHLLNRGTNSLRYMPVGIGRL-----TGLRTLGEFHVSAGGGVDGRKACRLESLKN  320 (488)
Q Consensus       248 L~l~~~~~~~~lp~~l--~~L~~L~~L~l~~~~~~~~lp~~i~~L-----~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~  320 (488)
                      |++++|.....+|..+  +.+++|++|++++|.+... |..++.+     ++|++|++.+|.+.+       .....+..
T Consensus       100 L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~-------~~~~~~~~  171 (312)
T 1wwl_A          100 LTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLN-------FSCEQVRV  171 (312)
T ss_dssp             EEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCC-------CCTTTCCC
T ss_pred             EEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCcc-------chHHHhcc
Confidence            9999988666888876  8999999999999995554 8777777     999999999998765       12245667


Q ss_pred             CCcccccccccccCCCChhhhhHhhc--ccCCCCCceeecccCchhhhhhhccccchHHHh-hhCCCCCCCCEEEecccc
Q 038150          321 LEHLQVCGISRLGDVSDVGEAKRLEL--DKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLL-EALRPPLNLKELEIEYYR  397 (488)
Q Consensus       321 L~~L~~L~~~~~~~~~~~~~~~~~~l--~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~  397 (488)
                      +++|+.|+++...-...  ...+..+  ..+++|+.|++++|.+...          ..++ ..+..+++|+.|++++|.
T Consensus       172 l~~L~~L~Ls~N~l~~~--~~~~~~~~~~~l~~L~~L~L~~N~l~~~----------~~~~~~~~~~l~~L~~L~Ls~N~  239 (312)
T 1wwl_A          172 FPALSTLDLSDNPELGE--RGLISALCPLKFPTLQVLALRNAGMETP----------SGVCSALAAARVQLQGLDLSHNS  239 (312)
T ss_dssp             CSSCCEEECCSCTTCHH--HHHHHHSCTTSCTTCCEEECTTSCCCCH----------HHHHHHHHHTTCCCSEEECTTSC
T ss_pred             CCCCCEEECCCCCcCcc--hHHHHHHHhccCCCCCEEECCCCcCcch----------HHHHHHHHhcCCCCCEEECCCCc
Confidence            88888888865542111  1122333  7899999999999998632          2333 334577899999999999


Q ss_pred             CCCCCc-hHHHhccCCcEEeecCCCCCCCCCC-CCCCCCcCeeeecccccceeeCccccCCCCCCCCCCCCCcccccCcc
Q 038150          398 GNTVFP-SWMTSLTNLKSLDLSSCENCEQLPP-LGKLQSLENLHIWRMESVKRVGDEFLGIESDHHGSSSSSSVIIAFPK  475 (488)
Q Consensus       398 ~~~~lp-~~~~~l~~L~~L~l~~~~~~~~~~~-l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~  475 (488)
                      +....| ..+..+++|++|++++|... .+|. +.  ++|++|++++|. ++.+|.                  ...+|+
T Consensus       240 l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~-l~~~p~------------------~~~l~~  297 (312)
T 1wwl_A          240 LRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNR-LDRNPS------------------PDELPQ  297 (312)
T ss_dssp             CCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSC-CCSCCC------------------TTTSCE
T ss_pred             CCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCC-CCCChh------------------HhhCCC
Confidence            887443 34556899999999999865 6776 55  899999999986 555543                  336899


Q ss_pred             cccccccccc
Q 038150          476 LKSLSIEVLR  485 (488)
Q Consensus       476 L~~L~l~~~p  485 (488)
                      |++|.+.+.+
T Consensus       298 L~~L~L~~N~  307 (312)
T 1wwl_A          298 VGNLSLKGNP  307 (312)
T ss_dssp             EEEEECTTCT
T ss_pred             CCEEeccCCC
Confidence            9999998865

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.77  E-value=9.7e-20  Score=173.27  Aligned_cols=240  Identities=15%  Similarity=0.091  Sum_probs=172.8

Q ss_pred             ccccCcceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccCccCchhhhhhccCcEeecCCCCC
Q 038150          176 LRVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVLPETLCELYNLEKLDISDCFN  255 (488)
Q Consensus       176 ~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~lp~~i~~L~~L~~L~l~~~~~  255 (488)
                      ..+++|++|++++| .+.. ..+..|..+++|++|++++|.+      .         ..+. ++.+++|++|++++|. 
T Consensus        31 ~~~~~L~~L~L~~n-~l~~-~~~~~~~~l~~L~~L~Ls~n~l------~---------~~~~-~~~l~~L~~L~Ls~n~-   91 (317)
T 3o53_A           31 QSAWNVKELDLSGN-PLSQ-ISAADLAPFTKLELLNLSSNVL------Y---------ETLD-LESLSTLRTLDLNNNY-   91 (317)
T ss_dssp             TTGGGCSEEECTTS-CCCC-CCHHHHTTCTTCCEEECTTSCC------E---------EEEE-ETTCTTCCEEECCSSE-
T ss_pred             ccCCCCCEEECcCC-ccCc-CCHHHhhCCCcCCEEECCCCcC------C---------cchh-hhhcCCCCEEECcCCc-
Confidence            45678999999997 5655 5667789999999999999984      3         2332 7788999999999975 


Q ss_pred             cccCchhhccccccceeeccCCCCCCCCCCCCCCcccccccCceeecCCCCCCCCcccCcccccCCCcccccccccccCC
Q 038150          256 LKELPEGIGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGRKACRLESLKNLEHLQVCGISRLGDV  335 (488)
Q Consensus       256 ~~~lp~~l~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~  335 (488)
                      +..+|    ..++|++|++++|.+.. ++.  ..+++|++|++.+|.+..     .  ....+..+++|+.|+++...-.
T Consensus        92 l~~l~----~~~~L~~L~l~~n~l~~-~~~--~~~~~L~~L~l~~N~l~~-----~--~~~~~~~l~~L~~L~Ls~N~l~  157 (317)
T 3o53_A           92 VQELL----VGPSIETLHAANNNISR-VSC--SRGQGKKNIYLANNKITM-----L--RDLDEGCRSRVQYLDLKLNEID  157 (317)
T ss_dssp             EEEEE----ECTTCCEEECCSSCCSE-EEE--CCCSSCEEEECCSSCCCS-----G--GGBCTGGGSSEEEEECTTSCCC
T ss_pred             ccccc----CCCCcCEEECCCCccCC-cCc--cccCCCCEEECCCCCCCC-----c--cchhhhccCCCCEEECCCCCCC
Confidence            55444    44899999999988543 332  236789999998887765     1  1223456777888777654321


Q ss_pred             CChhhhhHhhc-ccCCCCCceeecccCchhhhhhhccccchHHHhhhCCCCCCCCEEEeccccCCCCCchHHHhccCCcE
Q 038150          336 SDVGEAKRLEL-DKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKELEIEYYRGNTVFPSWMTSLTNLKS  414 (488)
Q Consensus       336 ~~~~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~  414 (488)
                      .    ..+..+ ..+++|+.|++++|.+...              .....+++|+.|++++|.+.. +|..+..+++|++
T Consensus       158 ~----~~~~~~~~~l~~L~~L~L~~N~l~~~--------------~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~  218 (317)
T 3o53_A          158 T----VNFAELAASSDTLEHLNLQYNFIYDV--------------KGQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTW  218 (317)
T ss_dssp             E----EEGGGGGGGTTTCCEEECTTSCCCEE--------------ECCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSE
T ss_pred             c----ccHHHHhhccCcCCEEECCCCcCccc--------------ccccccccCCEEECCCCcCCc-chhhhcccCcccE
Confidence            1    111223 4678999999999987432              233458899999999999988 7777889999999


Q ss_pred             EeecCCCCCCCCCC-CCCCCCcCeeeecccccc-eeeCccccCCCCCCCCCCCCCcccccCcccccccccccc
Q 038150          415 LDLSSCENCEQLPP-LGKLQSLENLHIWRMESV-KRVGDEFLGIESDHHGSSSSSSVIIAFPKLKSLSIEVLR  485 (488)
Q Consensus       415 L~l~~~~~~~~~~~-l~~l~~L~~L~l~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~p  485 (488)
                      |++++|... .+|. +..+++|+.|++++|+-. ..++..                 .+.+|+|+.|.+.+++
T Consensus       219 L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~-----------------~~~~~~L~~l~l~~~~  273 (317)
T 3o53_A          219 ISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDF-----------------FSKNQRVQTVAKQTVK  273 (317)
T ss_dssp             EECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHH-----------------HHTCHHHHHHHHHHHH
T ss_pred             EECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHH-----------------HhccccceEEECCCch
Confidence            999999865 5665 888999999999998732 122211                 3457788877777543

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.76  E-value=2.3e-18  Score=177.03  Aligned_cols=233  Identities=21%  Similarity=0.184  Sum_probs=163.8

Q ss_pred             ccceeeEEEEecCCcCccccccccCcceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccCccC
Q 038150          156 EKVRHLMLIFSKAASLPISTLRVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVL  235 (488)
Q Consensus       156 ~~vr~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~l  235 (488)
                      ..++.+.+..+....+|.   .+++|++|++++| .+..  +|.   .+++|++|++++|.      +.         .+
T Consensus        61 ~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N-~l~~--lp~---~l~~L~~L~Ls~N~------l~---------~l  116 (622)
T 3g06_A           61 AHITTLVIPDNNLTSLPA---LPPELRTLEVSGN-QLTS--LPV---LPPGLLELSIFSNP------LT---------HL  116 (622)
T ss_dssp             TTCSEEEECSCCCSCCCC---CCTTCCEEEECSC-CCSC--CCC---CCTTCCEEEECSCC------CC---------CC
T ss_pred             CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCC-cCCc--CCC---CCCCCCEEECcCCc------CC---------CC
Confidence            678889998888888876   5788999999987 4553  443   77889999999988      54         34


Q ss_pred             chhhhhhccCcEeecCCCCCcccCchhhccccccceeeccCCCCCCCCCCCCCCcccccccCceeecCCCCCCCCcccCc
Q 038150          236 PETLCELYNLEKLDISDCFNLKELPEGIGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGRKACRL  315 (488)
Q Consensus       236 p~~i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~  315 (488)
                      |.   .+.+|++|++++|. +..+|..   +++|++|++++|. ...+|..   +++|+.|++.+|.+..     .+   
T Consensus       117 ~~---~l~~L~~L~L~~N~-l~~lp~~---l~~L~~L~Ls~N~-l~~l~~~---~~~L~~L~L~~N~l~~-----l~---  177 (622)
T 3g06_A          117 PA---LPSGLCKLWIFGNQ-LTSLPVL---PPGLQELSVSDNQ-LASLPAL---PSELCKLWAYNNQLTS-----LP---  177 (622)
T ss_dssp             CC---CCTTCCEEECCSSC-CSCCCCC---CTTCCEEECCSSC-CSCCCCC---CTTCCEEECCSSCCSC-----CC---
T ss_pred             CC---CCCCcCEEECCCCC-CCcCCCC---CCCCCEEECcCCc-CCCcCCc---cCCCCEEECCCCCCCC-----Cc---
Confidence            44   56788999999875 6777764   4889999999987 4455543   4677777777776654     22   


Q ss_pred             ccccCCCcccccccccc--cCCCChhhhhHhhcccCCCCCceeecccCchhhhhhhccccchHHHhhhCCCCCCCCEEEe
Q 038150          316 ESLKNLEHLQVCGISRL--GDVSDVGEAKRLELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKELEI  393 (488)
Q Consensus       316 ~~l~~L~~L~~L~~~~~--~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l  393 (488)
                         ..+++|+.|.++..  ..++.          .+++|+.|++++|.+..             +|.   .+++|+.|++
T Consensus       178 ---~~~~~L~~L~Ls~N~l~~l~~----------~~~~L~~L~L~~N~l~~-------------l~~---~~~~L~~L~L  228 (622)
T 3g06_A          178 ---MLPSGLQELSVSDNQLASLPT----------LPSELYKLWAYNNRLTS-------------LPA---LPSGLKELIV  228 (622)
T ss_dssp             ---CCCTTCCEEECCSSCCSCCCC----------CCTTCCEEECCSSCCSS-------------CCC---CCTTCCEEEC
T ss_pred             ---ccCCCCcEEECCCCCCCCCCC----------ccchhhEEECcCCcccc-------------cCC---CCCCCCEEEc
Confidence               33466666666433  22221          24678888888887632             222   2468888888


Q ss_pred             ccccCCCCCchHHHhccCCcEEeecCCCCCCCCCCCCCCCCcCeeeecccccceeeCccccCCCCCCCCCCCCCcccccC
Q 038150          394 EYYRGNTVFPSWMTSLTNLKSLDLSSCENCEQLPPLGKLQSLENLHIWRMESVKRVGDEFLGIESDHHGSSSSSSVIIAF  473 (488)
Q Consensus       394 ~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  473 (488)
                      ++|.+.. +|   ..+++|+.|++++|.+. .+|.  .+++|+.|++++|. ++.+|..                 .+.+
T Consensus       229 s~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~--~~~~L~~L~Ls~N~-L~~lp~~-----------------l~~l  283 (622)
T 3g06_A          229 SGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM--LPSGLLSLSVYRNQ-LTRLPES-----------------LIHL  283 (622)
T ss_dssp             CSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC--CCTTCCEEECCSSC-CCSCCGG-----------------GGGS
T ss_pred             cCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc--ccccCcEEeCCCCC-CCcCCHH-----------------Hhhc
Confidence            8888876 77   45678888888888644 5665  56888888888875 6666543                 3457


Q ss_pred             cccccccccccc
Q 038150          474 PKLKSLSIEVLR  485 (488)
Q Consensus       474 p~L~~L~l~~~p  485 (488)
                      |+|+.|.+.+++
T Consensus       284 ~~L~~L~L~~N~  295 (622)
T 3g06_A          284 SSETTVNLEGNP  295 (622)
T ss_dssp             CTTCEEECCSCC
T ss_pred             cccCEEEecCCC
Confidence            888888888765

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.76  E-value=8.6e-19  Score=183.07  Aligned_cols=133  Identities=21%  Similarity=0.211  Sum_probs=93.8

Q ss_pred             ccccceeeEEEEecCCcCcc-ccccccCcceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccC
Q 038150          154 LDEKVRHLMLIFSKAASLPI-STLRVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEK  232 (488)
Q Consensus       154 ~~~~vr~l~l~~~~~~~~~~-~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~  232 (488)
                      .+..+++++++.+.+..++. .|.++++|++|++++| .+.. ..+..|.++++|++|+|++|.      +..+|.    
T Consensus        50 lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N-~i~~-i~~~~f~~L~~L~~L~Ls~N~------l~~l~~----  117 (635)
T 4g8a_A           50 LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQT-IEDGAYQSLSHLSTLILTGNP------IQSLAL----  117 (635)
T ss_dssp             SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTC-CCCE-ECTTTTTTCTTCCEEECTTCC------CCEECG----
T ss_pred             CCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCC-cCCC-cChhHhcCCCCCCEEEccCCc------CCCCCH----
Confidence            34678889888888877764 5788899999999987 5654 555668889999999999988      553322    


Q ss_pred             ccCchhhhhhccCcEeecCCCCCcccCch-hhccccccceeeccCCCCCC-CCCCCCCCcccccccCceeecC
Q 038150          233 LVLPETLCELYNLEKLDISDCFNLKELPE-GIGKLINVKHLLNRGTNSLR-YMPVGIGRLTGLRTLGEFHVSA  303 (488)
Q Consensus       233 l~lp~~i~~L~~L~~L~l~~~~~~~~lp~-~l~~L~~L~~L~l~~~~~~~-~lp~~i~~L~~L~~L~l~~~~~  303 (488)
                          ..++++++|++|++++|. +..+|. .++++++|++|++++|.+.. .+|..++++++|++|++.+|.+
T Consensus       118 ----~~f~~L~~L~~L~Ls~N~-l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l  185 (635)
T 4g8a_A          118 ----GAFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI  185 (635)
T ss_dssp             ----GGGTTCTTCCEEECTTSC-CCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCC
T ss_pred             ----HHhcCCCCCCEEECCCCc-CCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccc
Confidence                345677777777777765 455544 46777777777777776432 3455667777777777666543

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.76  E-value=7.3e-20  Score=179.26  Aligned_cols=256  Identities=18%  Similarity=0.119  Sum_probs=154.8

Q ss_pred             CcCccccccccCcceecccccchhhhh---hHHHHHhcCCccceeecCCCcccccccCCcc----cccccCccCchhhhh
Q 038150          169 ASLPISTLRVKRMRTLLINDHSLLNAA---ILEELFRELTSLRALDFGGSYHSTRLLTPEV----PRNIEKLVLPETLCE  241 (488)
Q Consensus       169 ~~~~~~~~~~~~Lr~L~l~~~~~~~~~---~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~l----p~~i~~l~lp~~i~~  241 (488)
                      ..++..+..+++|++|++++| .++..   .++..+..+++|++|+|++|.      +..+    |..+.  .+...+..
T Consensus        22 ~~l~~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~------~~~l~~~~~~~~~--~l~~~l~~   92 (386)
T 2ca6_A           22 KSVFAVLLEDDSVKEIVLSGN-TIGTEAARWLSENIASKKDLEIAEFSDIF------TGRVKDEIPEALR--LLLQALLK   92 (386)
T ss_dssp             HTTSHHHHHCSCCCEEECTTS-EECHHHHHHHHHTTTTCTTCCEEECCSCC------TTSCGGGSHHHHH--HHHHHHTT
T ss_pred             HHHHHHHhcCCCccEEECCCC-CCCHHHHHHHHHHHHhCCCccEEeCcccc------cCccccchhHHHH--HHHHHHhh
Confidence            445555666778888888876 44431   133335577888888888765      3322    22111  12233467


Q ss_pred             hccCcEeecCCCCCcc----cCchhhccccccceeeccCCCCCCC----CCCCCCCc---------ccccccCceeecCC
Q 038150          242 LYNLEKLDISDCFNLK----ELPEGIGKLINVKHLLNRGTNSLRY----MPVGIGRL---------TGLRTLGEFHVSAG  304 (488)
Q Consensus       242 L~~L~~L~l~~~~~~~----~lp~~l~~L~~L~~L~l~~~~~~~~----lp~~i~~L---------~~L~~L~l~~~~~~  304 (488)
                      +++|++|++++|....    .+|..+..+++|++|++++|.+...    ++..+..+         ++|++|++.+|.+.
T Consensus        93 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~  172 (386)
T 2ca6_A           93 CPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLE  172 (386)
T ss_dssp             CTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCT
T ss_pred             CCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCC
Confidence            7888888888876433    2666777788888888888764322    22223333         77888888777665


Q ss_pred             CCCCCCcccCcccccCCCcccccccccccCCCChhhhhHh-hcccCCCCCceeecccCchhhhhhhccccchHHHhhhCC
Q 038150          305 GGVDGRKACRLESLKNLEHLQVCGISRLGDVSDVGEAKRL-ELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALR  383 (488)
Q Consensus       305 ~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~  383 (488)
                      ...   .+.....+..+++|+.|.+....-.......+.. .+..+++|+.|++++|.+....        ...++..+.
T Consensus       173 ~~~---~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g--------~~~l~~~l~  241 (386)
T 2ca6_A          173 NGS---MKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLG--------SSALAIALK  241 (386)
T ss_dssp             GGG---HHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHH--------HHHHHHHGG
T ss_pred             cHH---HHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHH--------HHHHHHHHc
Confidence            210   1222234556667777777654321111112223 6677788888888888764321        145566777


Q ss_pred             CCCCCCEEEeccccCCCC----CchHHHh--ccCCcEEeecCCCCCC----CCCC-C-CCCCCcCeeeecccc
Q 038150          384 PPLNLKELEIEYYRGNTV----FPSWMTS--LTNLKSLDLSSCENCE----QLPP-L-GKLQSLENLHIWRME  444 (488)
Q Consensus       384 ~~~~L~~L~l~~~~~~~~----lp~~~~~--l~~L~~L~l~~~~~~~----~~~~-l-~~l~~L~~L~l~~~~  444 (488)
                      .+++|+.|+|++|.+...    +|.++..  +++|++|+|++|....    .+|. + .++|+|++|++++|+
T Consensus       242 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~  314 (386)
T 2ca6_A          242 SWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNR  314 (386)
T ss_dssp             GCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred             cCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCc
Confidence            778888888888876652    3455533  7788888888887655    2554 4 557888888888776

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.76  E-value=4.5e-18  Score=159.22  Aligned_cols=219  Identities=17%  Similarity=0.064  Sum_probs=162.9

Q ss_pred             ceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccCccCchhhhhhccCcEeecCCCCCcccCch
Q 038150          182 RTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVLPETLCELYNLEKLDISDCFNLKELPE  261 (488)
Q Consensus       182 r~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~lp~~i~~L~~L~~L~l~~~~~~~~lp~  261 (488)
                      +++++.++ .+.  .+|.  ...+.|++|++++|.      +..+        .+..+..+++|++|++++|......|.
T Consensus        14 ~~~~c~~~-~l~--~ip~--~~~~~l~~L~l~~n~------i~~~--------~~~~~~~~~~L~~L~l~~n~l~~~~~~   74 (285)
T 1ozn_A           14 VTTSCPQQ-GLQ--AVPV--GIPAASQRIFLHGNR------ISHV--------PAASFRACRNLTILWLHSNVLARIDAA   74 (285)
T ss_dssp             CEEECCSS-CCS--SCCT--TCCTTCSEEECTTSC------CCEE--------CTTTTTTCTTCCEEECCSSCCCEECTT
T ss_pred             eEEEcCcC-Ccc--cCCc--CCCCCceEEEeeCCc------CCcc--------CHHHcccCCCCCEEECCCCccceeCHh
Confidence            56777775 565  3554  346799999999998      5432        224578899999999999864444577


Q ss_pred             hhccccccceeeccCCCCCCCC-CCCCCCcccccccCceeecCCCCCCCCcccCcccccCCCcccccccccc--cCCCCh
Q 038150          262 GIGKLINVKHLLNRGTNSLRYM-PVGIGRLTGLRTLGEFHVSAGGGVDGRKACRLESLKNLEHLQVCGISRL--GDVSDV  338 (488)
Q Consensus       262 ~l~~L~~L~~L~l~~~~~~~~l-p~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~--~~~~~~  338 (488)
                      .+..+++|++|++++|.....+ |..++++++|++|++.+|.+...       ....+.++++|+.|.+...  ..++  
T Consensus        75 ~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-------~~~~~~~l~~L~~L~l~~n~l~~~~--  145 (285)
T 1ozn_A           75 AFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQEL-------GPGLFRGLAALQYLYLQDNALQALP--  145 (285)
T ss_dssp             TTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCC-------CTTTTTTCTTCCEEECCSSCCCCCC--
T ss_pred             hcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEE-------CHhHhhCCcCCCEEECCCCcccccC--
Confidence            8999999999999999734444 67799999999999998876641       1234566777777777543  3222  


Q ss_pred             hhhhHhhcccCCCCCceeecccCchhhhhhhccccchHHHhhhCCCCCCCCEEEeccccCCCCCchHHHhccCCcEEeec
Q 038150          339 GEAKRLELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKELEIEYYRGNTVFPSWMTSLTNLKSLDLS  418 (488)
Q Consensus       339 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~  418 (488)
                          ...+..+++|+.|++++|.+...            .+..+..+++|+.|++++|.+....|.++..+++|+.|+++
T Consensus       146 ----~~~~~~l~~L~~L~l~~n~l~~~------------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  209 (285)
T 1ozn_A          146 ----DDTFRDLGNLTHLFLHGNRISSV------------PERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLF  209 (285)
T ss_dssp             ----TTTTTTCTTCCEEECCSSCCCEE------------CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             ----HhHhccCCCccEEECCCCccccc------------CHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCC
Confidence                13467788899999998887422            12357778899999999988887558888888999999999


Q ss_pred             CCCCCCCCCC-CCCCCCcCeeeecccc
Q 038150          419 SCENCEQLPP-LGKLQSLENLHIWRME  444 (488)
Q Consensus       419 ~~~~~~~~~~-l~~l~~L~~L~l~~~~  444 (488)
                      +|......+. +..+++|+.|++++|+
T Consensus       210 ~n~l~~~~~~~~~~l~~L~~L~l~~N~  236 (285)
T 1ozn_A          210 ANNLSALPTEALAPLRALQYLRLNDNP  236 (285)
T ss_dssp             SSCCSCCCHHHHTTCTTCCEEECCSSC
T ss_pred             CCcCCcCCHHHcccCcccCEEeccCCC
Confidence            8876554434 7888999999998887

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.75  E-value=2.4e-19  Score=180.42  Aligned_cols=214  Identities=16%  Similarity=0.079  Sum_probs=151.8

Q ss_pred             ccCcceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccCccCchhhhhhccCcEeecCCCCCcc
Q 038150          178 VKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVLPETLCELYNLEKLDISDCFNLK  257 (488)
Q Consensus       178 ~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~lp~~i~~L~~L~~L~l~~~~~~~  257 (488)
                      +++|++|++++| .+.. ..|..|..+++|++|+|++|.+      .         ..+. ++.+++|++|++++|. +.
T Consensus        33 ~~~L~~L~Ls~n-~l~~-~~~~~~~~l~~L~~L~Ls~N~l------~---------~~~~-l~~l~~L~~L~Ls~N~-l~   93 (487)
T 3oja_A           33 AWNVKELDLSGN-PLSQ-ISAADLAPFTKLELLNLSSNVL------Y---------ETLD-LESLSTLRTLDLNNNY-VQ   93 (487)
T ss_dssp             GGGCCEEECCSS-CCCC-CCGGGGTTCTTCCEEECTTSCC------E---------EEEE-CTTCTTCCEEECCSSE-EE
T ss_pred             CCCccEEEeeCC-cCCC-CCHHHHhCCCCCCEEEeeCCCC------C---------CCcc-cccCCCCCEEEecCCc-CC
Confidence            347888888887 5554 5556678888888888888884      2         2222 6778888888888865 55


Q ss_pred             cCchhhccccccceeeccCCCCCCCCCCCCCCcccccccCceeecCCCCCCCCcccCcccccCCCcccccccccccCCCC
Q 038150          258 ELPEGIGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGRKACRLESLKNLEHLQVCGISRLGDVSD  337 (488)
Q Consensus       258 ~lp~~l~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~  337 (488)
                      .+|    ..++|++|++++|.+....+   ..+++|++|++.+|.+.+.       ....+.++++|+.|+++...-.. 
T Consensus        94 ~l~----~~~~L~~L~L~~N~l~~~~~---~~l~~L~~L~L~~N~l~~~-------~~~~~~~l~~L~~L~Ls~N~l~~-  158 (487)
T 3oja_A           94 ELL----VGPSIETLHAANNNISRVSC---SRGQGKKNIYLANNKITML-------RDLDEGCRSRVQYLDLKLNEIDT-  158 (487)
T ss_dssp             EEE----ECTTCCEEECCSSCCCCEEE---CCCSSCEEEECCSSCCCSG-------GGBCGGGGSSEEEEECTTSCCCE-
T ss_pred             CCC----CCCCcCEEECcCCcCCCCCc---cccCCCCEEECCCCCCCCC-------CchhhcCCCCCCEEECCCCCCCC-
Confidence            544    23788888888887443322   2457788888888776641       12234556677777665432211 


Q ss_pred             hhhhhHhhcc-cCCCCCceeecccCchhhhhhhccccchHHHhhhCCCCCCCCEEEeccccCCCCCchHHHhccCCcEEe
Q 038150          338 VGEAKRLELD-KKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKELEIEYYRGNTVFPSWMTSLTNLKSLD  416 (488)
Q Consensus       338 ~~~~~~~~l~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~  416 (488)
                         ..+..+. .+++|+.|++++|.+.+.              .....+++|+.|+|++|.+.. +|..+..+++|+.|+
T Consensus       159 ---~~~~~l~~~l~~L~~L~Ls~N~l~~~--------------~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~  220 (487)
T 3oja_A          159 ---VNFAELAASSDTLEHLNLQYNFIYDV--------------KGQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWIS  220 (487)
T ss_dssp             ---EEGGGGGGGTTTCCEEECTTSCCCEE--------------ECCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEE
T ss_pred             ---cChHHHhhhCCcccEEecCCCccccc--------------cccccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEE
Confidence               1123333 678999999999987532              234468899999999999988 777788999999999


Q ss_pred             ecCCCCCCCCCC-CCCCCCcCeeeecccc
Q 038150          417 LSSCENCEQLPP-LGKLQSLENLHIWRME  444 (488)
Q Consensus       417 l~~~~~~~~~~~-l~~l~~L~~L~l~~~~  444 (488)
                      +++|.... +|. ++.+++|+.|++++|+
T Consensus       221 Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~  248 (487)
T 3oja_A          221 LRNNKLVL-IEKALRFSQNLEHFDLRGNG  248 (487)
T ss_dssp             CTTSCCCE-ECTTCCCCTTCCEEECTTCC
T ss_pred             ecCCcCcc-cchhhccCCCCCEEEcCCCC
Confidence            99998654 555 8889999999999987

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.75  E-value=9.8e-19  Score=166.30  Aligned_cols=238  Identities=15%  Similarity=0.131  Sum_probs=177.1

Q ss_pred             cCcceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccCccCchhhhhhccCcEeecCCCCCccc
Q 038150          179 KRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVLPETLCELYNLEKLDISDCFNLKE  258 (488)
Q Consensus       179 ~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~lp~~i~~L~~L~~L~l~~~~~~~~  258 (488)
                      ..++..++..+ .+.. .+...+..+++|++|+|++|.+      ..        ..|..++.+++|++|++++|. +..
T Consensus        10 ~~l~i~~ls~~-~l~~-~~~~~~~~~~~L~~L~L~~n~l------~~--------~~~~~~~~l~~L~~L~Ls~n~-l~~   72 (317)
T 3o53_A           10 NRYKIEKVTDS-SLKQ-ALASLRQSAWNVKELDLSGNPL------SQ--------ISAADLAPFTKLELLNLSSNV-LYE   72 (317)
T ss_dssp             TEEEEESCCTT-THHH-HHHHHHTTGGGCSEEECTTSCC------CC--------CCHHHHTTCTTCCEEECTTSC-CEE
T ss_pred             CceeEeecccc-chhh-hHHHHhccCCCCCEEECcCCcc------Cc--------CCHHHhhCCCcCCEEECCCCc-CCc
Confidence            34556666665 4554 5667777888999999999994      32        345789999999999999986 444


Q ss_pred             CchhhccccccceeeccCCCCCCCCCCCCCCcccccccCceeecCCCCCCCCcccCcccccCCCcccccccccccCCCCh
Q 038150          259 LPEGIGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGRKACRLESLKNLEHLQVCGISRLGDVSDV  338 (488)
Q Consensus       259 lp~~l~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~  338 (488)
                      .+. +..+++|++|++++|.+ ..+|    ..++|++|++.+|.+.+     .+     ...+++|+.|.+....-..  
T Consensus        73 ~~~-~~~l~~L~~L~Ls~n~l-~~l~----~~~~L~~L~l~~n~l~~-----~~-----~~~~~~L~~L~l~~N~l~~--  134 (317)
T 3o53_A           73 TLD-LESLSTLRTLDLNNNYV-QELL----VGPSIETLHAANNNISR-----VS-----CSRGQGKKNIYLANNKITM--  134 (317)
T ss_dssp             EEE-ETTCTTCCEEECCSSEE-EEEE----ECTTCCEEECCSSCCSE-----EE-----ECCCSSCEEEECCSSCCCS--
T ss_pred             chh-hhhcCCCCEEECcCCcc-cccc----CCCCcCEEECCCCccCC-----cC-----ccccCCCCEEECCCCCCCC--
Confidence            443 89999999999999984 3333    45899999999887665     11     2235678887775443211  


Q ss_pred             hhhhHhhcccCCCCCceeecccCchhhhhhhccccchHHHhhhC-CCCCCCCEEEeccccCCCCCchHHHhccCCcEEee
Q 038150          339 GEAKRLELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEAL-RPPLNLKELEIEYYRGNTVFPSWMTSLTNLKSLDL  417 (488)
Q Consensus       339 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l  417 (488)
                        .....+..+++|+.|++++|.+...            .+..+ ..+++|+.|++++|.+.. +|... .+++|++|++
T Consensus       135 --~~~~~~~~l~~L~~L~Ls~N~l~~~------------~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~-~l~~L~~L~L  198 (317)
T 3o53_A          135 --LRDLDEGCRSRVQYLDLKLNEIDTV------------NFAELAASSDTLEHLNLQYNFIYD-VKGQV-VFAKLKTLDL  198 (317)
T ss_dssp             --GGGBCTGGGSSEEEEECTTSCCCEE------------EGGGGGGGTTTCCEEECTTSCCCE-EECCC-CCTTCCEEEC
T ss_pred             --ccchhhhccCCCCEEECCCCCCCcc------------cHHHHhhccCcCCEEECCCCcCcc-ccccc-ccccCCEEEC
Confidence              1224567789999999999988532            23333 467899999999999887 55433 5899999999


Q ss_pred             cCCCCCCCCCCCCCCCCcCeeeecccccceeeCccccCCCCCCCCCCCCCcccccCcccccccccccc
Q 038150          418 SSCENCEQLPPLGKLQSLENLHIWRMESVKRVGDEFLGIESDHHGSSSSSSVIIAFPKLKSLSIEVLR  485 (488)
Q Consensus       418 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~p  485 (488)
                      ++|......+.+..+++|+.|++++|. ++.+|..                 .+.+++|+.|.+.+++
T Consensus       199 s~N~l~~l~~~~~~l~~L~~L~L~~N~-l~~l~~~-----------------~~~l~~L~~L~l~~N~  248 (317)
T 3o53_A          199 SSNKLAFMGPEFQSAAGVTWISLRNNK-LVLIEKA-----------------LRFSQNLEHFDLRGNG  248 (317)
T ss_dssp             CSSCCCEECGGGGGGTTCSEEECTTSC-CCEECTT-----------------CCCCTTCCEEECTTCC
T ss_pred             CCCcCCcchhhhcccCcccEEECcCCc-ccchhhH-----------------hhcCCCCCEEEccCCC
Confidence            999866544448889999999999986 7777654                 3458899999999875

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.74  E-value=1.4e-17  Score=157.45  Aligned_cols=196  Identities=18%  Similarity=0.168  Sum_probs=115.8

Q ss_pred             cccCcceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccCccCchhhhhhccCcEeecCCCCCc
Q 038150          177 RVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVLPETLCELYNLEKLDISDCFNL  256 (488)
Q Consensus       177 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~lp~~i~~L~~L~~L~l~~~~~~  256 (488)
                      ++++|++|++.++ .+..  ++ .+..+++|++|++++|.      +.         .+|. +..+++|++|++++|. +
T Consensus        39 ~l~~L~~L~l~~~-~i~~--l~-~~~~l~~L~~L~L~~n~------i~---------~~~~-~~~l~~L~~L~L~~n~-l   97 (308)
T 1h6u_A           39 DLDGITTLSAFGT-GVTT--IE-GVQYLNNLIGLELKDNQ------IT---------DLAP-LKNLTKITELELSGNP-L   97 (308)
T ss_dssp             HHHTCCEEECTTS-CCCC--CT-TGGGCTTCCEEECCSSC------CC---------CCGG-GTTCCSCCEEECCSCC-C
T ss_pred             HcCCcCEEEeeCC-CccC--ch-hhhccCCCCEEEccCCc------CC---------CChh-HccCCCCCEEEccCCc-C
Confidence            4556666666654 4442  33 25556666666666665      33         2333 5556666666666644 4


Q ss_pred             ccCchhhccccccceeeccCCCCCCCCCCCCCCcccccccCceeecCCCCCCCCcccCcccccCCCcccccccccccCCC
Q 038150          257 KELPEGIGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGRKACRLESLKNLEHLQVCGISRLGDVS  336 (488)
Q Consensus       257 ~~lp~~l~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~  336 (488)
                      ..+| .+..+++|++|++++|.+ ..++. ++++++|++|++.+|.+.+                             + 
T Consensus        98 ~~~~-~~~~l~~L~~L~l~~n~l-~~~~~-l~~l~~L~~L~l~~n~l~~-----------------------------~-  144 (308)
T 1h6u_A           98 KNVS-AIAGLQSIKTLDLTSTQI-TDVTP-LAGLSNLQVLYLDLNQITN-----------------------------I-  144 (308)
T ss_dssp             SCCG-GGTTCTTCCEEECTTSCC-CCCGG-GTTCTTCCEEECCSSCCCC-----------------------------C-
T ss_pred             CCch-hhcCCCCCCEEECCCCCC-CCchh-hcCCCCCCEEECCCCccCc-----------------------------C-
Confidence            4443 455566666666666553 22332 5555666666555554332                             0 


Q ss_pred             ChhhhhHhhcccCCCCCceeecccCchhhhhhhccccchHHHhhhCCCCCCCCEEEeccccCCCCCchHHHhccCCcEEe
Q 038150          337 DVGEAKRLELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKELEIEYYRGNTVFPSWMTSLTNLKSLD  416 (488)
Q Consensus       337 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~  416 (488)
                             ..+..+++|+.|++++|.+..             ++. +..+++|+.|++++|.+.. ++. +..+++|++|+
T Consensus       145 -------~~l~~l~~L~~L~l~~n~l~~-------------~~~-l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~  201 (308)
T 1h6u_A          145 -------SPLAGLTNLQYLSIGNAQVSD-------------LTP-LANLSKLTTLKADDNKISD-ISP-LASLPNLIEVH  201 (308)
T ss_dssp             -------GGGGGCTTCCEEECCSSCCCC-------------CGG-GTTCTTCCEEECCSSCCCC-CGG-GGGCTTCCEEE
T ss_pred             -------ccccCCCCccEEEccCCcCCC-------------Chh-hcCCCCCCEEECCCCccCc-Chh-hcCCCCCCEEE
Confidence                   114556777777777776642             122 6677788888888887776 554 66778888888


Q ss_pred             ecCCCCCCCCCCCCCCCCcCeeeecccccceeeCc
Q 038150          417 LSSCENCEQLPPLGKLQSLENLHIWRMESVKRVGD  451 (488)
Q Consensus       417 l~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~  451 (488)
                      +++|... .++.+..+++|+.|++++|+ +...|.
T Consensus       202 L~~N~l~-~~~~l~~l~~L~~L~l~~N~-i~~~~~  234 (308)
T 1h6u_A          202 LKNNQIS-DVSPLANTSNLFIVTLTNQT-ITNQPV  234 (308)
T ss_dssp             CTTSCCC-BCGGGTTCTTCCEEEEEEEE-EECCCE
T ss_pred             ccCCccC-ccccccCCCCCCEEEccCCe-eecCCe
Confidence            8887744 34457777888888887776 444443

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.74  E-value=2.4e-18  Score=173.15  Aligned_cols=223  Identities=14%  Similarity=0.130  Sum_probs=167.3

Q ss_pred             hHHHHHhcCC----ccceeecCCCcccccccCCcccccccCccCchhhhhhccCcEeecCCCCCcccCchhhccccccce
Q 038150          196 ILEELFRELT----SLRALDFGGSYHSTRLLTPEVPRNIEKLVLPETLCELYNLEKLDISDCFNLKELPEGIGKLINVKH  271 (488)
Q Consensus       196 ~~~~~~~~l~----~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~lp~~i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~  271 (488)
                      .+|..+..+.    +|++|+|++|.+      ..        ..|..++.+++|++|++++|. +...++ ++.+++|++
T Consensus        21 ~l~~~l~~l~~~~~~L~~L~Ls~n~l------~~--------~~~~~~~~l~~L~~L~Ls~N~-l~~~~~-l~~l~~L~~   84 (487)
T 3oja_A           21 SLKQALASLRQSAWNVKELDLSGNPL------SQ--------ISAADLAPFTKLELLNLSSNV-LYETLD-LESLSTLRT   84 (487)
T ss_dssp             THHHHHHTTSTTGGGCCEEECCSSCC------CC--------CCGGGGTTCTTCCEEECTTSC-CEEEEE-CTTCTTCCE
T ss_pred             hhHHHHHHhcccCCCccEEEeeCCcC------CC--------CCHHHHhCCCCCCEEEeeCCC-CCCCcc-cccCCCCCE
Confidence            3455555544    899999999994      32        345688999999999999987 444443 999999999


Q ss_pred             eeccCCCCCCCCCCCCCCcccccccCceeecCCCCCCCCcccCcccccCCCcccccccccccCCCChhhhhHhhcccCCC
Q 038150          272 LLNRGTNSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGRKACRLESLKNLEHLQVCGISRLGDVSDVGEAKRLELDKKKY  351 (488)
Q Consensus       272 L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~  351 (488)
                      |++++|.+ ..+|    ..++|++|++.+|.+.+     .+     ...+++|+.|.+....-..    ..+..+..+++
T Consensus        85 L~Ls~N~l-~~l~----~~~~L~~L~L~~N~l~~-----~~-----~~~l~~L~~L~L~~N~l~~----~~~~~~~~l~~  145 (487)
T 3oja_A           85 LDLNNNYV-QELL----VGPSIETLHAANNNISR-----VS-----CSRGQGKKNIYLANNKITM----LRDLDEGCRSR  145 (487)
T ss_dssp             EECCSSEE-EEEE----ECTTCCEEECCSSCCCC-----EE-----ECCCSSCEEEECCSSCCCS----GGGBCGGGGSS
T ss_pred             EEecCCcC-CCCC----CCCCcCEEECcCCcCCC-----CC-----ccccCCCCEEECCCCCCCC----CCchhhcCCCC
Confidence            99999984 3344    34899999999998765     11     1245678887775443211    12356778999


Q ss_pred             CCceeecccCchhhhhhhccccchHHHhhhCC-CCCCCCEEEeccccCCCCCchHHHhccCCcEEeecCCCCCCCCCCCC
Q 038150          352 LSSLTLWFDKEEEEEGERRKNEDNQLLLEALR-PPLNLKELEIEYYRGNTVFPSWMTSLTNLKSLDLSSCENCEQLPPLG  430 (488)
Q Consensus       352 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~l~  430 (488)
                      |+.|++++|.+.+.            .|..+. .+++|+.|+|++|.+.. +|.. ..+++|+.|++++|......|.++
T Consensus       146 L~~L~Ls~N~l~~~------------~~~~l~~~l~~L~~L~Ls~N~l~~-~~~~-~~l~~L~~L~Ls~N~l~~~~~~~~  211 (487)
T 3oja_A          146 VQYLDLKLNEIDTV------------NFAELAASSDTLEHLNLQYNFIYD-VKGQ-VVFAKLKTLDLSSNKLAFMGPEFQ  211 (487)
T ss_dssp             EEEEECTTSCCCEE------------EGGGGGGGTTTCCEEECTTSCCCE-EECC-CCCTTCCEEECCSSCCCEECGGGG
T ss_pred             CCEEECCCCCCCCc------------ChHHHhhhCCcccEEecCCCcccc-cccc-ccCCCCCEEECCCCCCCCCCHhHc
Confidence            99999999998632            344554 68899999999999887 5543 368999999999998766555588


Q ss_pred             CCCCcCeeeecccccceeeCccccCCCCCCCCCCCCCcccccCcccccccccccc
Q 038150          431 KLQSLENLHIWRMESVKRVGDEFLGIESDHHGSSSSSSVIIAFPKLKSLSIEVLR  485 (488)
Q Consensus       431 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~p  485 (488)
                      .+++|+.|++++|. +..+|..                 .+.+|+|+.|.+.+++
T Consensus       212 ~l~~L~~L~Ls~N~-l~~lp~~-----------------l~~l~~L~~L~l~~N~  248 (487)
T 3oja_A          212 SAAGVTWISLRNNK-LVLIEKA-----------------LRFSQNLEHFDLRGNG  248 (487)
T ss_dssp             GGTTCSEEECTTSC-CCEECTT-----------------CCCCTTCCEEECTTCC
T ss_pred             CCCCccEEEecCCc-Ccccchh-----------------hccCCCCCEEEcCCCC
Confidence            99999999999987 6677654                 3457888888888765

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.73  E-value=9.9e-20  Score=182.75  Aligned_cols=243  Identities=16%  Similarity=0.067  Sum_probs=125.0

Q ss_pred             ccceeeEEEEecCC-----cCccccccccCcceecccccchhhhhhHHHHHhcCC----ccceeecCCCcccccccCCcc
Q 038150          156 EKVRHLMLIFSKAA-----SLPISTLRVKRMRTLLINDHSLLNAAILEELFRELT----SLRALDFGGSYHSTRLLTPEV  226 (488)
Q Consensus       156 ~~vr~l~l~~~~~~-----~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~----~Lr~L~Ls~~~~~~~~~~~~l  226 (488)
                      ..++.+++..+...     .++..+..+++|++|++++| .+....+...+..++    +|++|++++|.+      ...
T Consensus        28 ~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i------~~~  100 (461)
T 1z7x_W           28 QQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSN-ELGDVGVHCVLQGLQTPSCKIQKLSLQNCCL------TGA  100 (461)
T ss_dssp             TTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTC-CCHHHHHHHHHHTTCSTTCCCCEEECTTSCC------BGG
T ss_pred             CCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCC-cCChHHHHHHHHHHhhCCCceeEEEccCCCC------CHH
Confidence            45667777766653     34455566677777777776 344323333344455    577777777763      210


Q ss_pred             cccccCccCchhhhhhccCcEeecCCCCCcccCchhhc-----cccccceeeccCCCCCCC----CCCCCCCcccccccC
Q 038150          227 PRNIEKLVLPETLCELYNLEKLDISDCFNLKELPEGIG-----KLINVKHLLNRGTNSLRY----MPVGIGRLTGLRTLG  297 (488)
Q Consensus       227 p~~i~~l~lp~~i~~L~~L~~L~l~~~~~~~~lp~~l~-----~L~~L~~L~l~~~~~~~~----lp~~i~~L~~L~~L~  297 (488)
                      ...    .+|..+..+++|++|++++|.....-+..+.     ..++|++|++++|.+...    ++..+..+++|++|+
T Consensus       101 ~~~----~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~  176 (461)
T 1z7x_W          101 GCG----VLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELT  176 (461)
T ss_dssp             GHH----HHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEE
T ss_pred             HHH----HHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEE
Confidence            000    2455666777777777777653222222222     244677777777764332    233445567777777


Q ss_pred             ceeecCCCCCCCCcccCc-cccc-CCCcccccccccccCCCChhhhhHhhcccCCCCCceeecccCchhhhhhhccccch
Q 038150          298 EFHVSAGGGVDGRKACRL-ESLK-NLEHLQVCGISRLGDVSDVGEAKRLELDKKKYLSSLTLWFDKEEEEEGERRKNEDN  375 (488)
Q Consensus       298 l~~~~~~~~~~~~~~~~~-~~l~-~L~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~  375 (488)
                      +.+|.+.+..    ...+ ..+. ..++|+.|.+....-.......++..+..+++|+.|++++|.+.....        
T Consensus       177 L~~n~i~~~~----~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~--------  244 (461)
T 1z7x_W          177 VSNNDINEAG----VRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGM--------  244 (461)
T ss_dssp             CCSSBCHHHH----HHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHH--------
T ss_pred             CcCCCcchHH----HHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHH--------
Confidence            7666543200    0000 1111 234566666655433233333345555666777777777766543210        


Q ss_pred             HHHh-hhCCCCCCCCEEEeccccCCCC----CchHHHhccCCcEEeecCCC
Q 038150          376 QLLL-EALRPPLNLKELEIEYYRGNTV----FPSWMTSLTNLKSLDLSSCE  421 (488)
Q Consensus       376 ~~~~-~~~~~~~~L~~L~l~~~~~~~~----lp~~~~~l~~L~~L~l~~~~  421 (488)
                      ..+. .....+++|+.|++++|.+...    ++..+..+++|++|++++|.
T Consensus       245 ~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~  295 (461)
T 1z7x_W          245 AELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNE  295 (461)
T ss_dssp             HHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCC
T ss_pred             HHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCC
Confidence            1121 2223455666666666654431    34444455566666666554

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.73  E-value=6.2e-18  Score=168.54  Aligned_cols=240  Identities=16%  Similarity=0.105  Sum_probs=130.6

Q ss_pred             cccceeeEEEEecCCcCccccccccCcceecccccchhhhhhHHHHHhcCCc-------------cceeecCCCcccccc
Q 038150          155 DEKVRHLMLIFSKAASLPISTLRVKRMRTLLINDHSLLNAAILEELFRELTS-------------LRALDFGGSYHSTRL  221 (488)
Q Consensus       155 ~~~vr~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~-------------Lr~L~Ls~~~~~~~~  221 (488)
                      ...++.+.+..+..+.+|..++++++|++|++++| .+.+ .+|..++++.+             +++|++++|.     
T Consensus        10 ~~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n-~~~~-~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~-----   82 (454)
T 1jl5_A           10 NTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWS-EWER-NAPPGNGEQREMAVSRLRDCLDRQAHELELNNLG-----   82 (454)
T ss_dssp             ------------------------CCHHHHHHHHH-HHHH-TSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSC-----
T ss_pred             cccchhhhcccCchhhCChhHhcccchhhhhccCC-cccc-cCCcccccchhcchhhhhhhhccCCCEEEecCCc-----
Confidence            45677888888888999999999999999999997 4554 55655666654             4888888888     


Q ss_pred             cCCcccc---cccCc--------cCchhhhhhccCcEeecCCCCCcccCchhhccccccceeeccCCCCCCCCCCCCCCc
Q 038150          222 LTPEVPR---NIEKL--------VLPETLCELYNLEKLDISDCFNLKELPEGIGKLINVKHLLNRGTNSLRYMPVGIGRL  290 (488)
Q Consensus       222 ~~~~lp~---~i~~l--------~lp~~i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~L~l~~~~~~~~lp~~i~~L  290 (488)
                       ...+|.   .+..+        .+|..   +.+|++|++++|. +..+|..   .++|++|++++|.+. .+| .++++
T Consensus        83 -l~~lp~~~~~L~~L~l~~n~l~~lp~~---~~~L~~L~l~~n~-l~~l~~~---~~~L~~L~L~~n~l~-~lp-~~~~l  152 (454)
T 1jl5_A           83 -LSSLPELPPHLESLVASCNSLTELPEL---PQSLKSLLVDNNN-LKALSDL---PPLLEYLGVSNNQLE-KLP-ELQNS  152 (454)
T ss_dssp             -CSCCCSCCTTCSEEECCSSCCSSCCCC---CTTCCEEECCSSC-CSCCCSC---CTTCCEEECCSSCCS-SCC-CCTTC
T ss_pred             -cccCCCCcCCCCEEEccCCcCCccccc---cCCCcEEECCCCc-cCcccCC---CCCCCEEECcCCCCC-CCc-ccCCC
Confidence             443433   22211        23321   2566666666653 3444321   157777777777643 466 47777


Q ss_pred             ccccccCceeecCCCCCCCCcccCcccccCCCcccccccccccCCCChhhhhHhhcccCCCCCceeecccCchhhhhhhc
Q 038150          291 TGLRTLGEFHVSAGGGVDGRKACRLESLKNLEHLQVCGISRLGDVSDVGEAKRLELDKKKYLSSLTLWFDKEEEEEGERR  370 (488)
Q Consensus       291 ~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~  370 (488)
                      ++|++|++.+|.+.+     .+..      ..+|+.|.+....- ..    + ..+..+++|+.|++++|.+.+      
T Consensus       153 ~~L~~L~l~~N~l~~-----lp~~------~~~L~~L~L~~n~l-~~----l-~~~~~l~~L~~L~l~~N~l~~------  209 (454)
T 1jl5_A          153 SFLKIIDVDNNSLKK-----LPDL------PPSLEFIAAGNNQL-EE----L-PELQNLPFLTAIYADNNSLKK------  209 (454)
T ss_dssp             TTCCEEECCSSCCSC-----CCCC------CTTCCEEECCSSCC-SS----C-CCCTTCTTCCEEECCSSCCSS------
T ss_pred             CCCCEEECCCCcCcc-----cCCC------cccccEEECcCCcC-Cc----C-ccccCCCCCCEEECCCCcCCc------
Confidence            777777777776554     2221      12555555543221 11    1 135677788888888877632      


Q ss_pred             cccchHHHhhhCCCCCCCCEEEeccccCCCCCchHHHhccCCcEEeecCCCCCCCCCCCCCCCCcCeeeecccccceeeC
Q 038150          371 KNEDNQLLLEALRPPLNLKELEIEYYRGNTVFPSWMTSLTNLKSLDLSSCENCEQLPPLGKLQSLENLHIWRMESVKRVG  450 (488)
Q Consensus       371 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~  450 (488)
                             +|.   .+++|+.|++++|.+.. +|. ++.+++|++|++++|... .+|..  +++|++|++++|. +..+|
T Consensus       210 -------l~~---~~~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~l~~N~l~-~l~~~--~~~L~~L~l~~N~-l~~l~  273 (454)
T 1jl5_A          210 -------LPD---LPLSLESIVAGNNILEE-LPE-LQNLPFLTTIYADNNLLK-TLPDL--PPSLEALNVRDNY-LTDLP  273 (454)
T ss_dssp             -------CCC---CCTTCCEEECCSSCCSS-CCC-CTTCTTCCEEECCSSCCS-SCCSC--CTTCCEEECCSSC-CSCCC
T ss_pred             -------CCC---CcCcccEEECcCCcCCc-ccc-cCCCCCCCEEECCCCcCC-ccccc--ccccCEEECCCCc-ccccC
Confidence                   222   12478888888887775 774 677888888888887644 35542  3677777777765 44444

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.72  E-value=3.5e-18  Score=159.19  Aligned_cols=119  Identities=17%  Similarity=0.108  Sum_probs=81.0

Q ss_pred             CcCccccccccCcceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccCccCchhhhhhccCcEe
Q 038150          169 ASLPISTLRVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVLPETLCELYNLEKL  248 (488)
Q Consensus       169 ~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~lp~~i~~L~~L~~L  248 (488)
                      ..+|..+  .++|++|++++| .+.. ..+..|.++++|++|++++|.      +..+        .+..++++++|++|
T Consensus        20 ~~ip~~l--~~~l~~L~ls~n-~l~~-~~~~~~~~l~~L~~L~l~~n~------l~~~--------~~~~~~~l~~L~~L   81 (276)
T 2z62_A           20 YKIPDNL--PFSTKNLDLSFN-PLRH-LGSYSFFSFPELQVLDLSRCE------IQTI--------EDGAYQSLSHLSTL   81 (276)
T ss_dssp             SSCCSSS--CTTCCEEECTTC-CCCE-ECTTTTTTCTTCSEEECTTCC------CCEE--------CTTTTTTCTTCCEE
T ss_pred             cccCCCC--CCCccEEECCCC-cccc-cCHhHhccccCCcEEECCCCc------CCcc--------CHHHccCCcCCCEE
Confidence            4455443  256888888887 4544 444457788888888888887      4422        22356778888888


Q ss_pred             ecCCCCCcccCchhhccccccceeeccCCCCCCCCCCCCCCcccccccCceeecCCC
Q 038150          249 DISDCFNLKELPEGIGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFHVSAGG  305 (488)
Q Consensus       249 ~l~~~~~~~~lp~~l~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~  305 (488)
                      ++++|......|..+.++++|++|++++|......+..++++++|++|++.+|.+..
T Consensus        82 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  138 (276)
T 2z62_A           82 ILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS  138 (276)
T ss_dssp             ECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCC
T ss_pred             ECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccce
Confidence            888876444444667888888888888887544434467888888888887776543

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.72  E-value=3.9e-17  Score=151.68  Aligned_cols=202  Identities=17%  Similarity=0.132  Sum_probs=116.5

Q ss_pred             HhcCCccceeecCCCcccccccCCcccccccCccCchhhhhhccCcEeecCCCCCcccCchhhccccccceeeccCCCCC
Q 038150          201 FRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVLPETLCELYNLEKLDISDCFNLKELPEGIGKLINVKHLLNRGTNSL  280 (488)
Q Consensus       201 ~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~lp~~i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~L~l~~~~~~  280 (488)
                      +..+++|+.|+++++.      +.         . +..++.+++|++|++++|. +..++ .++.+++|++|++++|.+.
T Consensus        37 ~~~l~~L~~L~l~~~~------i~---------~-~~~l~~l~~L~~L~l~~n~-l~~~~-~l~~l~~L~~L~L~~n~l~   98 (272)
T 3rfs_A           37 QNELNSIDQIIANNSD------IK---------S-VQGIQYLPNVRYLALGGNK-LHDIS-ALKELTNLTYLILTGNQLQ   98 (272)
T ss_dssp             HHHHTTCCEEECTTSC------CC---------C-CTTGGGCTTCCEEECTTSC-CCCCG-GGTTCTTCCEEECTTSCCC
T ss_pred             cccccceeeeeeCCCC------cc---------c-ccccccCCCCcEEECCCCC-CCCch-hhcCCCCCCEEECCCCccC
Confidence            3456667777777666      32         1 2245666777777777754 44443 5666777777777776644


Q ss_pred             CCCCCCCCCcccccccCceeecCCCCCCCCcccCcccccCCCcccccccccc--cCCCChhhhhHhhcccCCCCCceeec
Q 038150          281 RYMPVGIGRLTGLRTLGEFHVSAGGGVDGRKACRLESLKNLEHLQVCGISRL--GDVSDVGEAKRLELDKKKYLSSLTLW  358 (488)
Q Consensus       281 ~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~--~~~~~~~~~~~~~l~~l~~L~~L~l~  358 (488)
                      ...+..++++++|++|++.+|.+.+     .+  ...+..+++|+.|.+...  ..++      ...+..+++|+.|+++
T Consensus        99 ~~~~~~~~~l~~L~~L~L~~n~l~~-----~~--~~~~~~l~~L~~L~L~~n~l~~~~------~~~~~~l~~L~~L~l~  165 (272)
T 3rfs_A           99 SLPNGVFDKLTNLKELVLVENQLQS-----LP--DGVFDKLTNLTYLNLAHNQLQSLP------KGVFDKLTNLTELDLS  165 (272)
T ss_dssp             CCCTTTTTTCTTCCEEECTTSCCCC-----CC--TTTTTTCTTCCEEECCSSCCCCCC------TTTTTTCTTCCEEECC
T ss_pred             ccChhHhcCCcCCCEEECCCCcCCc-----cC--HHHhccCCCCCEEECCCCccCccC------HHHhccCccCCEEECC
Confidence            3333345667777777766665443     11  111333444444444322  1111      1334566777777777


Q ss_pred             ccCchhhhhhhccccchHHHhhhCCCCCCCCEEEeccccCCCCCchHHHhccCCcEEeecCCCCCCCCCCCCCCCCcCee
Q 038150          359 FDKEEEEEGERRKNEDNQLLLEALRPPLNLKELEIEYYRGNTVFPSWMTSLTNLKSLDLSSCENCEQLPPLGKLQSLENL  438 (488)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L  438 (488)
                      +|.+...            .+..+..+++|+.|++++|.+....|..++.+++|++|++++|+..      +.+|+|+.|
T Consensus       166 ~n~l~~~------------~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~------~~~~~l~~l  227 (272)
T 3rfs_A          166 YNQLQSL------------PEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD------CTCPGIRYL  227 (272)
T ss_dssp             SSCCCCC------------CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC------CCTTTTHHH
T ss_pred             CCCcCcc------------CHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcc------ccCcHHHHH
Confidence            7776421            2234566777778887777777634445667777777777777533      345667777


Q ss_pred             eecccccceeeCc
Q 038150          439 HIWRMESVKRVGD  451 (488)
Q Consensus       439 ~l~~~~~l~~~~~  451 (488)
                      .++.+.-...+|.
T Consensus       228 ~~~~n~~~g~ip~  240 (272)
T 3rfs_A          228 SEWINKHSGVVRN  240 (272)
T ss_dssp             HHHHHHTGGGBBC
T ss_pred             HHHHHhCCCcccC
Confidence            7766654444443

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.72  E-value=2.4e-19  Score=179.88  Aligned_cols=265  Identities=18%  Similarity=0.071  Sum_probs=152.6

Q ss_pred             cceeeEEEEecCC-----cCccccccccCcceecccccchhhhhhHHHHHh-----cCCccceeecCCCcccccccCCcc
Q 038150          157 KVRHLMLIFSKAA-----SLPISTLRVKRMRTLLINDHSLLNAAILEELFR-----ELTSLRALDFGGSYHSTRLLTPEV  226 (488)
Q Consensus       157 ~vr~l~l~~~~~~-----~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~-----~l~~Lr~L~Ls~~~~~~~~~~~~l  226 (488)
                      .++++++..+...     .++..+..+++|++|++++| .+.. ..+..+.     ..++|++|++++|.+     ....
T Consensus        86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~-~~~~~l~~~l~~~~~~L~~L~L~~n~l-----~~~~  158 (461)
T 1z7x_W           86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN-LLGD-AGLQLLCEGLLDPQCRLEKLQLEYCSL-----SAAS  158 (461)
T ss_dssp             CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSS-BCHH-HHHHHHHHHHTSTTCCCCEEECTTSCC-----BGGG
T ss_pred             ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCC-cCch-HHHHHHHHHHhcCCCcceEEECCCCCC-----CHHH
Confidence            5778888777664     34666778888888888887 3543 2222222     245788888888874     2211


Q ss_pred             cccccCccCchhhhhhccCcEeecCCCCCcccCchhhc-----cccccceeeccCCCCCCC----CCCCCCCcccccccC
Q 038150          227 PRNIEKLVLPETLCELYNLEKLDISDCFNLKELPEGIG-----KLINVKHLLNRGTNSLRY----MPVGIGRLTGLRTLG  297 (488)
Q Consensus       227 p~~i~~l~lp~~i~~L~~L~~L~l~~~~~~~~lp~~l~-----~L~~L~~L~l~~~~~~~~----lp~~i~~L~~L~~L~  297 (488)
                      +.     .++..+..+++|++|++++|.....-+..+.     .+++|++|++++|.+...    ++..+..+++|++|+
T Consensus       159 ~~-----~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~  233 (461)
T 1z7x_W          159 CE-----PLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELA  233 (461)
T ss_dssp             HH-----HHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEE
T ss_pred             HH-----HHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEe
Confidence            11     3456677778888888888763322222232     255888888888874432    455566778888888


Q ss_pred             ceeecCCCCCCCCcccCccc-ccCCCcccccccccccCCCChhhhhHhhcccCCCCCceeecccCchhhhhhhccccchH
Q 038150          298 EFHVSAGGGVDGRKACRLES-LKNLEHLQVCGISRLGDVSDVGEAKRLELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQ  376 (488)
Q Consensus       298 l~~~~~~~~~~~~~~~~~~~-l~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~  376 (488)
                      +.+|.+.+..   ....... ...+++|+.|.+....-.......++..+..+++|+.|++++|.+.....        .
T Consensus       234 Ls~n~l~~~~---~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~--------~  302 (461)
T 1z7x_W          234 LGSNKLGDVG---MAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGA--------R  302 (461)
T ss_dssp             CCSSBCHHHH---HHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHH--------H
T ss_pred             ccCCcCChHH---HHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHH--------H
Confidence            8777544300   0000011 12466777777765532222223355566677888888888887653311        2


Q ss_pred             HHhhhCC-CCCCCCEEEeccccCCCC----CchHHHhccCCcEEeecCCCCCCCCCC-C----C-CCCCcCeeeecccc
Q 038150          377 LLLEALR-PPLNLKELEIEYYRGNTV----FPSWMTSLTNLKSLDLSSCENCEQLPP-L----G-KLQSLENLHIWRME  444 (488)
Q Consensus       377 ~~~~~~~-~~~~L~~L~l~~~~~~~~----lp~~~~~l~~L~~L~l~~~~~~~~~~~-l----~-~l~~L~~L~l~~~~  444 (488)
                      .+...+. +.++|+.|++++|.+...    +|.++..+++|++|++++|......+. +    . ..++|++|++++|.
T Consensus       303 ~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~  381 (461)
T 1z7x_W          303 LLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCD  381 (461)
T ss_dssp             HHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred             HHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCC
Confidence            2333322 234677777777665542    345555666777777766653322111 1    1 14566666666664

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.72  E-value=8.1e-17  Score=149.37  Aligned_cols=88  Identities=20%  Similarity=0.170  Sum_probs=68.0

Q ss_pred             hcccCCCCCceeecccCchhhhhhhccccchHHHhhhCCCCCCCCEEEeccccCCCCCchHHHhccCCcEEeecCCCCCC
Q 038150          345 ELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKELEIEYYRGNTVFPSWMTSLTNLKSLDLSSCENCE  424 (488)
Q Consensus       345 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~  424 (488)
                      .+..+++|+.|++++|.+...            .+..+..+++|+.|++++|.+....+..+..+++|++|++++|....
T Consensus       128 ~~~~l~~L~~L~Ls~n~l~~~------------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~  195 (270)
T 2o6q_A          128 VFDSLTKLTYLSLGYNELQSL------------PKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKR  195 (270)
T ss_dssp             TTTTCTTCCEEECCSSCCCCC------------CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred             HhCcCcCCCEEECCCCcCCcc------------CHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCc
Confidence            456778899999999987422            12347788999999999998887334457788999999999997655


Q ss_pred             CCCC-CCCCCCcCeeeecccc
Q 038150          425 QLPP-LGKLQSLENLHIWRME  444 (488)
Q Consensus       425 ~~~~-l~~l~~L~~L~l~~~~  444 (488)
                      ..+. +..+++|+.|++++|+
T Consensus       196 ~~~~~~~~l~~L~~L~l~~N~  216 (270)
T 2o6q_A          196 VPEGAFDSLEKLKMLQLQENP  216 (270)
T ss_dssp             CCTTTTTTCTTCCEEECCSSC
T ss_pred             CCHHHhccccCCCEEEecCCC
Confidence            4443 7888999999998887

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.71  E-value=2.7e-17  Score=153.19  Aligned_cols=203  Identities=16%  Similarity=0.076  Sum_probs=137.5

Q ss_pred             CccceeecCCCcccccccCCcccccccCccCchhhhhhccCcEeecCCCCCcccCchhhccccccceeeccCCCCCCCCC
Q 038150          205 TSLRALDFGGSYHSTRLLTPEVPRNIEKLVLPETLCELYNLEKLDISDCFNLKELPEGIGKLINVKHLLNRGTNSLRYMP  284 (488)
Q Consensus       205 ~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~lp~~i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~L~l~~~~~~~~lp  284 (488)
                      +.|++|++++|.      +..+        .+..++++++|++|++++|......+..+.++++|++|++++|.+....+
T Consensus        28 ~~l~~L~ls~n~------l~~~--------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~   93 (276)
T 2z62_A           28 FSTKNLDLSFNP------LRHL--------GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLAL   93 (276)
T ss_dssp             TTCCEEECTTCC------CCEE--------CTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECT
T ss_pred             CCccEEECCCCc------cccc--------CHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccCh
Confidence            479999999998      4422        22367889999999999986433344578999999999999998655555


Q ss_pred             CCCCCcccccccCceeecCCCCCCCCcccCcccccCCCcccccccccccCCCChhhhhHhhcccCCCCCceeecccCchh
Q 038150          285 VGIGRLTGLRTLGEFHVSAGGGVDGRKACRLESLKNLEHLQVCGISRLGDVSDVGEAKRLELDKKKYLSSLTLWFDKEEE  364 (488)
Q Consensus       285 ~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  364 (488)
                      ..++++++|++|++.+|....     .+  ...+..+++|+.|.+....-...   .++..+..+++|+.|++++|.+..
T Consensus        94 ~~~~~l~~L~~L~l~~n~l~~-----~~--~~~~~~l~~L~~L~l~~n~l~~~---~l~~~~~~l~~L~~L~Ls~N~l~~  163 (276)
T 2z62_A           94 GAFSGLSSLQKLVAVETNLAS-----LE--NFPIGHLKTLKELNVAHNLIQSF---KLPEYFSNLTNLEHLDLSSNKIQS  163 (276)
T ss_dssp             TTTTTCTTCCEEECTTSCCCC-----ST--TCCCTTCTTCCEEECCSSCCCCC---CCCGGGGGCTTCCEEECCSSCCCE
T ss_pred             hhhcCCccccEEECCCCCccc-----cC--chhcccCCCCCEEECcCCcccee---cCchhhccCCCCCEEECCCCCCCc
Confidence            778999999999998887654     11  11355667777776654321110   022456777888888888887653


Q ss_pred             hhhhhccccchHHHhhhCCCCCCCC----EEEeccccCCCCCchHHHhccCCcEEeecCCCCCCCCCC-CCCCCCcCeee
Q 038150          365 EEGERRKNEDNQLLLEALRPPLNLK----ELEIEYYRGNTVFPSWMTSLTNLKSLDLSSCENCEQLPP-LGKLQSLENLH  439 (488)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~~L~----~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~-l~~l~~L~~L~  439 (488)
                      ..            +..+..+++|+    .|++++|.+.. +|.......+|++|++++|......+. ++.+++|+.|+
T Consensus       164 ~~------------~~~~~~l~~L~~l~l~L~ls~n~l~~-~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  230 (276)
T 2z62_A          164 IY------------CTDLRVLHQMPLLNLSLDLSLNPMNF-IQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIW  230 (276)
T ss_dssp             EC------------GGGGHHHHTCTTCCEEEECCSSCCCE-ECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEE
T ss_pred             CC------------HHHhhhhhhccccceeeecCCCcccc-cCccccCCCcccEEECCCCceeecCHhHhcccccccEEE
Confidence            21            12232333333    78888887776 555444555788888888875543333 67788888888


Q ss_pred             ecccc
Q 038150          440 IWRME  444 (488)
Q Consensus       440 l~~~~  444 (488)
                      +++|+
T Consensus       231 l~~N~  235 (276)
T 2z62_A          231 LHTNP  235 (276)
T ss_dssp             CCSSC
T ss_pred             ccCCc
Confidence            88776

>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}

Probab=99.71  E-value=3.6e-18  Score=134.20  Aligned_cols=64  Identities=30%  Similarity=0.464  Sum_probs=59.9

Q ss_pred             CcchhcHHHHHHHHHHHHHHHHHHHHHHhhh--ccCcHHHHHHHHHHHHhhhchHHHHHHHHHhhh
Q 038150            1 VKLVVGVEKEVKSLTSHLQAIQAVLDDAEEK--QVKDKAVRHWLGRLKYASYDIEDVLDEWITGRR   64 (488)
Q Consensus         1 ~~l~~~v~~~i~~l~~eL~~~~~~L~~a~~~--~~~~~~v~~w~~~lr~~~yd~eD~id~~~~~~~   64 (488)
                      |++++||+++|++|++||++|++||.||+++  +..+++++.|++++|+++||+||++|+|.+++.
T Consensus        18 ~~l~~gv~~~i~~Lk~eL~~m~a~L~da~~~~~~~~d~~vk~W~~~vrdlaYD~ED~iD~f~~~~~   83 (115)
T 3qfl_A           18 FKLHKGVKKNIEDLGKELESMNAALIKIGEVPREQLDSQDKLWADEVRELSYVIEDVVDKFLVQVD   83 (115)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhchHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            4688999999999999999999999999998  668999999999999999999999999998663

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.71  E-value=2e-17  Score=156.76  Aligned_cols=231  Identities=15%  Similarity=0.070  Sum_probs=161.3

Q ss_pred             cCcceecccccchhhhhhHHHH--HhcCCccceeecCCCcccccccCCcccccccCccCchhh--hhhccCcEeecCCCC
Q 038150          179 KRMRTLLINDHSLLNAAILEEL--FRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVLPETL--CELYNLEKLDISDCF  254 (488)
Q Consensus       179 ~~Lr~L~l~~~~~~~~~~~~~~--~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~lp~~i--~~L~~L~~L~l~~~~  254 (488)
                      ..++.|.+.++ .+....+...  +..+++|++|++++|.+     .+         ..|..+  +.+++|++|++++|.
T Consensus        64 ~~l~~l~l~~~-~~~~~~~~~~~~~~~~~~L~~L~l~~n~l-----~~---------~~~~~~~~~~~~~L~~L~Ls~n~  128 (310)
T 4glp_A           64 LRVRRLTVGAA-QVPAQLLVGALRVLAYSRLKELTLEDLKI-----TG---------TMPPLPLEATGLALSSLRLRNVS  128 (310)
T ss_dssp             CCCCEEEECSC-CCBHHHHHHHHHHHHHSCCCEEEEESCCC-----BS---------CCCCCSSSCCCBCCSSCEEESCC
T ss_pred             cceeEEEEeCC-cCCHHHHHHHHHhcccCceeEEEeeCCEe-----cc---------chhhhhhhccCCCCCEEEeeccc
Confidence            34566666665 2222122221  23456799999999985     44         444555  788999999999987


Q ss_pred             CcccCc----hhhccccccceeeccCCCCCCCCCCCCCCcccccccCceeecCCCCCCCCcccCcccccCCCcccccccc
Q 038150          255 NLKELP----EGIGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGRKACRLESLKNLEHLQVCGIS  330 (488)
Q Consensus       255 ~~~~lp----~~l~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~  330 (488)
                      .....|    ..+..+++|++|++++|.+....|..++++++|++|++++|...+..   .......+..+++|+.|.++
T Consensus       129 i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~---~~~~~~~~~~l~~L~~L~Ls  205 (310)
T 4glp_A          129 WATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGER---GLMAALCPHKFPAIQNLALR  205 (310)
T ss_dssp             CSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHH---HHHTTSCTTSSCCCCSCBCC
T ss_pred             ccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccch---hhhHHHhhhcCCCCCEEECC
Confidence            554443    34567899999999999866655677899999999999988754300   00001123567788888776


Q ss_pred             cccCCCChhhhhHhhcccCCCCCceeecccCchhhhhhhccccchHHHhhhCCCC---CCCCEEEeccccCCCCCchHHH
Q 038150          331 RLGDVSDVGEAKRLELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPP---LNLKELEIEYYRGNTVFPSWMT  407 (488)
Q Consensus       331 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~L~~L~l~~~~~~~~lp~~~~  407 (488)
                      ...- ..........+..+++|+.|++++|.+..            ..|..+..+   ++|+.|++++|.+.. +|..+.
T Consensus       206 ~N~l-~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~------------~~p~~~~~~~~~~~L~~L~Ls~N~l~~-lp~~~~  271 (310)
T 4glp_A          206 NTGM-ETPTGVCAALAAAGVQPHSLDLSHNSLRA------------TVNPSAPRCMWSSALNSLNLSFAGLEQ-VPKGLP  271 (310)
T ss_dssp             SSCC-CCHHHHHHHHHHHTCCCSSEECTTSCCCC------------CCCSCCSSCCCCTTCCCEECCSSCCCS-CCSCCC
T ss_pred             CCCC-CchHHHHHHHHhcCCCCCEEECCCCCCCc------------cchhhHHhccCcCcCCEEECCCCCCCc-hhhhhc
Confidence            5432 22222222235788999999999999853            224445554   799999999999996 888763


Q ss_pred             hccCCcEEeecCCCCCCCCCCCCCCCCcCeeeecccc
Q 038150          408 SLTNLKSLDLSSCENCEQLPPLGKLQSLENLHIWRME  444 (488)
Q Consensus       408 ~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~  444 (488)
                        ++|++|++++|... .+|.+..+++|+.|++++|+
T Consensus       272 --~~L~~L~Ls~N~l~-~~~~~~~l~~L~~L~L~~N~  305 (310)
T 4glp_A          272 --AKLRVLDLSSNRLN-RAPQPDELPEVDNLTLDGNP  305 (310)
T ss_dssp             --SCCSCEECCSCCCC-SCCCTTSCCCCSCEECSSTT
T ss_pred             --CCCCEEECCCCcCC-CCchhhhCCCccEEECcCCC
Confidence              89999999999855 45667888999999999987

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.70  E-value=3.4e-17  Score=153.35  Aligned_cols=199  Identities=17%  Similarity=0.103  Sum_probs=136.9

Q ss_pred             cccccCcceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccCccCchhhhhhccCcEeecCCCC
Q 038150          175 TLRVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVLPETLCELYNLEKLDISDCF  254 (488)
Q Consensus       175 ~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~lp~~i~~L~~L~~L~l~~~~  254 (488)
                      +.++++++++++.++ .+.  .+|..+  .+.+++|+|++|.      +..        ..|..+..+++|++|++++|.
T Consensus         6 ~~~l~~l~~l~~~~~-~l~--~ip~~~--~~~l~~L~L~~N~------l~~--------~~~~~~~~l~~L~~L~L~~n~   66 (290)
T 1p9a_G            6 VSKVASHLEVNCDKR-NLT--ALPPDL--PKDTTILHLSENL------LYT--------FSLATLMPYTRLTQLNLDRAE   66 (290)
T ss_dssp             EECSTTCCEEECTTS-CCS--SCCSCC--CTTCCEEECTTSC------CSE--------EEGGGGTTCTTCCEEECTTSC
T ss_pred             ccccCCccEEECCCC-CCC--cCCCCC--CCCCCEEEcCCCc------CCc--------cCHHHhhcCCCCCEEECCCCc
Confidence            445667777777775 555  344322  3567777777777      332        224556677777777777754


Q ss_pred             CcccCchhhccccccceeeccCCCCCCCCCCCCCCcccccccCceeecCCCCCCCCcccCcccccCCCcccccccccccC
Q 038150          255 NLKELPEGIGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGRKACRLESLKNLEHLQVCGISRLGD  334 (488)
Q Consensus       255 ~~~~lp~~l~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~  334 (488)
                       +..+|.. +.+++|++|++++|. ...+|..+..+++|++|++.+|.+..                             
T Consensus        67 -l~~~~~~-~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~l~~N~l~~-----------------------------  114 (290)
T 1p9a_G           67 -LTKLQVD-GTLPVLGTLDLSHNQ-LQSLPLLGQTLPALTVLDVSFNRLTS-----------------------------  114 (290)
T ss_dssp             -CCEEECC-SCCTTCCEEECCSSC-CSSCCCCTTTCTTCCEEECCSSCCCC-----------------------------
T ss_pred             -cCcccCC-CCCCcCCEEECCCCc-CCcCchhhccCCCCCEEECCCCcCcc-----------------------------
Confidence             5555543 667777777777776 44666667777777777776665433                             


Q ss_pred             CCChhhhhHhhcccCCCCCceeecccCchhhhhhhccccchHHHhhhCCCCCCCCEEEeccccCCCCCch-HHHhccCCc
Q 038150          335 VSDVGEAKRLELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKELEIEYYRGNTVFPS-WMTSLTNLK  413 (488)
Q Consensus       335 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~lp~-~~~~l~~L~  413 (488)
                      ++      +..+..+++|+.|++++|.+...            .+..+..+++|+.|++++|.+.. +|. .+..+++|+
T Consensus       115 l~------~~~~~~l~~L~~L~L~~N~l~~~------------~~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~  175 (290)
T 1p9a_G          115 LP------LGALRGLGELQELYLKGNELKTL------------PPGLLTPTPKLEKLSLANNNLTE-LPAGLLNGLENLD  175 (290)
T ss_dssp             CC------SSTTTTCTTCCEEECTTSCCCCC------------CTTTTTTCTTCCEEECTTSCCSC-CCTTTTTTCTTCC
T ss_pred             cC------HHHHcCCCCCCEEECCCCCCCcc------------ChhhcccccCCCEEECCCCcCCc-cCHHHhcCcCCCC
Confidence            11      13456678899999999987422            23446778899999999999887 654 456789999


Q ss_pred             EEeecCCCCCCCCCC-CCCCCCcCeeeecccc
Q 038150          414 SLDLSSCENCEQLPP-LGKLQSLENLHIWRME  444 (488)
Q Consensus       414 ~L~l~~~~~~~~~~~-l~~l~~L~~L~l~~~~  444 (488)
                      +|++++|... .+|. +..+++|+.|.+++|+
T Consensus       176 ~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np  206 (290)
T 1p9a_G          176 TLLLQENSLY-TIPKGFFGSHLLPFAFLHGNP  206 (290)
T ss_dssp             EEECCSSCCC-CCCTTTTTTCCCSEEECCSCC
T ss_pred             EEECCCCcCC-ccChhhcccccCCeEEeCCCC
Confidence            9999999855 5665 7778899999998877

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.70  E-value=1.9e-18  Score=165.84  Aligned_cols=223  Identities=13%  Similarity=0.078  Sum_probs=125.9

Q ss_pred             ceeeEEEEecCCcCccccccc--cCcceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccCccC
Q 038150          158 VRHLMLIFSKAASLPISTLRV--KRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVL  235 (488)
Q Consensus       158 vr~l~l~~~~~~~~~~~~~~~--~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~l  235 (488)
                      ++++++..+...  +..+..+  +++++|++.++ .+.. ..+. +..+++|++|++++|.+     ...        .+
T Consensus        49 ~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n-~l~~-~~~~-~~~~~~L~~L~L~~~~l-----~~~--------~~  110 (336)
T 2ast_B           49 WQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRS-FMDQ-PLAE-HFSPFRVQHMDLSNSVI-----EVS--------TL  110 (336)
T ss_dssp             SSEEECTTCBCC--HHHHHHHHHTTCSEEECTTC-EECS-CCCS-CCCCBCCCEEECTTCEE-----CHH--------HH
T ss_pred             heeeccccccCC--HHHHHhhhhccceEEEcCCc-cccc-cchh-hccCCCCCEEEccCCCc-----CHH--------HH
Confidence            445555433322  2334444  67777777776 3443 3333 45677777777777763     210        25


Q ss_pred             chhhhhhccCcEeecCCCCCcccCchhhccccccceeeccCCCCCC--CCCCCCCCcccccccCceee-cCCCCCCCCcc
Q 038150          236 PETLCELYNLEKLDISDCFNLKELPEGIGKLINVKHLLNRGTNSLR--YMPVGIGRLTGLRTLGEFHV-SAGGGVDGRKA  312 (488)
Q Consensus       236 p~~i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~L~l~~~~~~~--~lp~~i~~L~~L~~L~l~~~-~~~~~~~~~~~  312 (488)
                      |..+..+++|++|++++|......|..++.+++|++|++++|....  .++..++++++|++|++.+| .+.+      .
T Consensus       111 ~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~------~  184 (336)
T 2ast_B          111 HGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTE------K  184 (336)
T ss_dssp             HHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCH------H
T ss_pred             HHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcCh------H
Confidence            5666777777777777776444566677777777777777773222  24444666777777777766 4432      1


Q ss_pred             cCcccccCCC-ccccccccccc-CCCChhhhhHhhcccCCCCCceeecccC-chhhhhhhccccchHHHhhhCCCCCCCC
Q 038150          313 CRLESLKNLE-HLQVCGISRLG-DVSDVGEAKRLELDKKKYLSSLTLWFDK-EEEEEGERRKNEDNQLLLEALRPPLNLK  389 (488)
Q Consensus       313 ~~~~~l~~L~-~L~~L~~~~~~-~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~L~  389 (488)
                      .....+..++ +|+.|.+..+. .+.  ...++..+..+++|+.|++++|. ++            ...+..+..+++|+
T Consensus       185 ~~~~~~~~l~~~L~~L~l~~~~~~~~--~~~l~~~~~~~~~L~~L~l~~~~~l~------------~~~~~~l~~l~~L~  250 (336)
T 2ast_B          185 HVQVAVAHVSETITQLNLSGYRKNLQ--KSDLSTLVRRCPNLVHLDLSDSVMLK------------NDCFQEFFQLNYLQ  250 (336)
T ss_dssp             HHHHHHHHSCTTCCEEECCSCGGGSC--HHHHHHHHHHCTTCSEEECTTCTTCC------------GGGGGGGGGCTTCC
T ss_pred             HHHHHHHhcccCCCEEEeCCCcccCC--HHHHHHHHhhCCCCCEEeCCCCCcCC------------HHHHHHHhCCCCCC
Confidence            1122344455 66666665443 222  12334455566667777776665 32            22334555566677


Q ss_pred             EEEeccccCCCCCch---HHHhccCCcEEeecCC
Q 038150          390 ELEIEYYRGNTVFPS---WMTSLTNLKSLDLSSC  420 (488)
Q Consensus       390 ~L~l~~~~~~~~lp~---~~~~l~~L~~L~l~~~  420 (488)
                      .|++++|...  .+.   .++.+++|++|++++|
T Consensus       251 ~L~l~~~~~~--~~~~~~~l~~~~~L~~L~l~~~  282 (336)
T 2ast_B          251 HLSLSRCYDI--IPETLLELGEIPTLKTLQVFGI  282 (336)
T ss_dssp             EEECTTCTTC--CGGGGGGGGGCTTCCEEECTTS
T ss_pred             EeeCCCCCCC--CHHHHHHHhcCCCCCEEeccCc
Confidence            7777666421  222   3556667777777666

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.70  E-value=6.3e-17  Score=161.24  Aligned_cols=216  Identities=19%  Similarity=0.169  Sum_probs=121.3

Q ss_pred             cCcceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccCc-----------cCchhhhhhccCcE
Q 038150          179 KRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKL-----------VLPETLCELYNLEK  247 (488)
Q Consensus       179 ~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l-----------~lp~~i~~L~~L~~  247 (488)
                      ++|++|++.+| .+..  +|. +.++++|++|++++|.      +..+|..+.++           .+| .++++++|++
T Consensus       131 ~~L~~L~L~~n-~l~~--lp~-~~~l~~L~~L~l~~N~------l~~lp~~~~~L~~L~L~~n~l~~l~-~~~~l~~L~~  199 (454)
T 1jl5_A          131 PLLEYLGVSNN-QLEK--LPE-LQNSSFLKIIDVDNNS------LKKLPDLPPSLEFIAAGNNQLEELP-ELQNLPFLTA  199 (454)
T ss_dssp             TTCCEEECCSS-CCSS--CCC-CTTCTTCCEEECCSSC------CSCCCCCCTTCCEEECCSSCCSSCC-CCTTCTTCCE
T ss_pred             CCCCEEECcCC-CCCC--Ccc-cCCCCCCCEEECCCCc------CcccCCCcccccEEECcCCcCCcCc-cccCCCCCCE
Confidence            46666666665 3432  332 6666667777777666      33344433322           444 4667777777


Q ss_pred             eecCCCCCcccCchhhccccccceeeccCCCCCCCCCCCCCCcccccccCceeecCCCCCCCCcccCcccccCCCccccc
Q 038150          248 LDISDCFNLKELPEGIGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGRKACRLESLKNLEHLQVC  327 (488)
Q Consensus       248 L~l~~~~~~~~lp~~l~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~L  327 (488)
                      |++++|. +..+|...   .+|++|++++|.+ ..+| .++++++|++|++.+|.+.+     .+..      +++|+.|
T Consensus       200 L~l~~N~-l~~l~~~~---~~L~~L~l~~n~l-~~lp-~~~~l~~L~~L~l~~N~l~~-----l~~~------~~~L~~L  262 (454)
T 1jl5_A          200 IYADNNS-LKKLPDLP---LSLESIVAGNNIL-EELP-ELQNLPFLTTIYADNNLLKT-----LPDL------PPSLEAL  262 (454)
T ss_dssp             EECCSSC-CSSCCCCC---TTCCEEECCSSCC-SSCC-CCTTCTTCCEEECCSSCCSS-----CCSC------CTTCCEE
T ss_pred             EECCCCc-CCcCCCCc---CcccEEECcCCcC-Cccc-ccCCCCCCCEEECCCCcCCc-----cccc------ccccCEE
Confidence            7777765 44455322   4677777777763 3566 37777888888877776554     1211      1344444


Q ss_pred             cccc--ccCCCChhhhhHhhcccCCCCCceeecccCchhhh--hh------hccccchHHHhhhCCCC-CCCCEEEeccc
Q 038150          328 GISR--LGDVSDVGEAKRLELDKKKYLSSLTLWFDKEEEEE--GE------RRKNEDNQLLLEALRPP-LNLKELEIEYY  396 (488)
Q Consensus       328 ~~~~--~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~--~~------~~~~~~~~~~~~~~~~~-~~L~~L~l~~~  396 (488)
                      .+..  +.+++.          ..++|+.|++++|.+.+..  +.      ...+..     ..+... ++|+.|++++|
T Consensus       263 ~l~~N~l~~l~~----------~~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l-----~~i~~~~~~L~~L~Ls~N  327 (454)
T 1jl5_A          263 NVRDNYLTDLPE----------LPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEI-----RSLCDLPPSLEELNVSNN  327 (454)
T ss_dssp             ECCSSCCSCCCC----------CCTTCCEEECCSSCCSEESCCCTTCCEEECCSSCC-----SEECCCCTTCCEEECCSS
T ss_pred             ECCCCcccccCc----------ccCcCCEEECcCCccCcccCcCCcCCEEECcCCcC-----CcccCCcCcCCEEECCCC
Confidence            4422  222211          1244555555555443210  00      000000     011122 47888888888


Q ss_pred             cCCCCCchHHHhccCCcEEeecCCCCCCCCCCCCCCCCcCeeeecccc
Q 038150          397 RGNTVFPSWMTSLTNLKSLDLSSCENCEQLPPLGKLQSLENLHIWRME  444 (488)
Q Consensus       397 ~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~  444 (488)
                      .+.+ +|..   +++|+.|++++|... .+|.  .+++|++|++++|.
T Consensus       328 ~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~--~l~~L~~L~L~~N~  368 (454)
T 1jl5_A          328 KLIE-LPAL---PPRLERLIASFNHLA-EVPE--LPQNLKQLHVEYNP  368 (454)
T ss_dssp             CCSC-CCCC---CTTCCEEECCSSCCS-CCCC--CCTTCCEEECCSSC
T ss_pred             cccc-cccc---CCcCCEEECCCCccc-cccc--hhhhccEEECCCCC
Confidence            7776 7664   578888888888754 5665  46888888888876

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.70  E-value=6.1e-18  Score=162.33  Aligned_cols=226  Identities=16%  Similarity=0.134  Sum_probs=160.5

Q ss_pred             cCcceecccccchhhhhhHHHHHhcC--CccceeecCCCcccccccCCcccccccCccCchhhhhhccCcEeecCCCCCc
Q 038150          179 KRMRTLLINDHSLLNAAILEELFREL--TSLRALDFGGSYHSTRLLTPEVPRNIEKLVLPETLCELYNLEKLDISDCFNL  256 (488)
Q Consensus       179 ~~Lr~L~l~~~~~~~~~~~~~~~~~l--~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~lp~~i~~L~~L~~L~l~~~~~~  256 (488)
                      ..++.+++.++ .+.    +..+..+  +.+++|+++++.+      .         ..+..+..+++|++|++++|...
T Consensus        47 ~~~~~l~l~~~-~~~----~~~~~~~~~~~l~~L~l~~n~l------~---------~~~~~~~~~~~L~~L~L~~~~l~  106 (336)
T 2ast_B           47 SLWQTLDLTGK-NLH----PDVTGRLLSQGVIAFRCPRSFM------D---------QPLAEHFSPFRVQHMDLSNSVIE  106 (336)
T ss_dssp             TTSSEEECTTC-BCC----HHHHHHHHHTTCSEEECTTCEE------C---------SCCCSCCCCBCCCEEECTTCEEC
T ss_pred             hhheeeccccc-cCC----HHHHHhhhhccceEEEcCCccc------c---------ccchhhccCCCCCEEEccCCCcC
Confidence            34788888886 332    2345555  7899999999884      3         22333557889999999998743


Q ss_pred             cc-CchhhccccccceeeccCCCCCCCCCCCCCCcccccccCceeec-CCCCCCCCcccCcccccCCCcccccccccccC
Q 038150          257 KE-LPEGIGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFHVS-AGGGVDGRKACRLESLKNLEHLQVCGISRLGD  334 (488)
Q Consensus       257 ~~-lp~~l~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~-~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~  334 (488)
                      .. +|..+..+++|++|++++|......|..++++++|++|++.+|. +.+      ......+.++++|+.|.+..+..
T Consensus       107 ~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~------~~l~~~~~~~~~L~~L~l~~~~~  180 (336)
T 2ast_B          107 VSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSE------FALQTLLSSCSRLDELNLSWCFD  180 (336)
T ss_dssp             HHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCH------HHHHHHHHHCTTCCEEECCCCTT
T ss_pred             HHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCH------HHHHHHHhcCCCCCEEcCCCCCC
Confidence            33 77788899999999999987655666778889999999998873 332      11223356677888888876644


Q ss_pred             CCChhhhhHhhcccCC-CCCceeecccC--chhhhhhhccccchHHHhhhCCCCCCCCEEEecccc-CCCCCchHHHhcc
Q 038150          335 VSDVGEAKRLELDKKK-YLSSLTLWFDK--EEEEEGERRKNEDNQLLLEALRPPLNLKELEIEYYR-GNTVFPSWMTSLT  410 (488)
Q Consensus       335 ~~~~~~~~~~~l~~l~-~L~~L~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~lp~~~~~l~  410 (488)
                      +.+  ..+...+..++ +|+.|++++|.  ++           ...++..+..+++|+.|++++|. +....+..+..++
T Consensus       181 l~~--~~~~~~~~~l~~~L~~L~l~~~~~~~~-----------~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~  247 (336)
T 2ast_B          181 FTE--KHVQVAVAHVSETITQLNLSGYRKNLQ-----------KSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLN  247 (336)
T ss_dssp             CCH--HHHHHHHHHSCTTCCEEECCSCGGGSC-----------HHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCT
T ss_pred             cCh--HHHHHHHHhcccCCCEEEeCCCcccCC-----------HHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCC
Confidence            432  22455677788 99999998884  32           14455666678899999999988 4444677788889


Q ss_pred             CCcEEeecCCCCCCC--CCCCCCCCCcCeeeeccc
Q 038150          411 NLKSLDLSSCENCEQ--LPPLGKLQSLENLHIWRM  443 (488)
Q Consensus       411 ~L~~L~l~~~~~~~~--~~~l~~l~~L~~L~l~~~  443 (488)
                      +|++|++++|.....  +..++.+++|++|++++|
T Consensus       248 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~  282 (336)
T 2ast_B          248 YLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  282 (336)
T ss_dssp             TCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             CCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence            999999998863332  223677899999999888

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.70  E-value=3.4e-17  Score=152.02  Aligned_cols=73  Identities=11%  Similarity=0.025  Sum_probs=57.1

Q ss_pred             hhcccCCCCCceeecccCchhhhhhhccccchHHHhhhCCCCCCCCEEEeccccCCCCCchHHHhccCCcEEeecCCCCC
Q 038150          344 LELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKELEIEYYRGNTVFPSWMTSLTNLKSLDLSSCENC  423 (488)
Q Consensus       344 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~  423 (488)
                      ..+..+++|+.|++++|.+.+.            .+..+..+++|+.|++++|.+..       .+++|+.|+++.|...
T Consensus       175 ~~~~~l~~L~~L~L~~N~l~~~------------~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~l~~~~n~~~  235 (272)
T 3rfs_A          175 GVFDKLTQLKDLRLYQNQLKSV------------PDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHS  235 (272)
T ss_dssp             TTTTTCTTCCEEECCSSCCSCC------------CTTTTTTCTTCCEEECCSSCBCC-------CTTTTHHHHHHHHHTG
T ss_pred             HHhcCCccCCEEECCCCcCCcc------------CHHHHhCCcCCCEEEccCCCccc-------cCcHHHHHHHHHHhCC
Confidence            3456789999999999988532            23557889999999999998764       4568899999988888


Q ss_pred             CCCCC-CCCCCCc
Q 038150          424 EQLPP-LGKLQSL  435 (488)
Q Consensus       424 ~~~~~-l~~l~~L  435 (488)
                      +.+|. ++.++..
T Consensus       236 g~ip~~~~~~~~~  248 (272)
T 3rfs_A          236 GVVRNSAGSVAPD  248 (272)
T ss_dssp             GGBBCTTSCBCGG
T ss_pred             CcccCcccccCCC
Confidence            88886 7766554

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.70  E-value=4e-18  Score=166.86  Aligned_cols=270  Identities=13%  Similarity=0.081  Sum_probs=187.3

Q ss_pred             ccccceeeEEEEecCCc-----CccccccccCcceeccccc--chhhh------hhHHHHHhcCCccceeecCCCccccc
Q 038150          154 LDEKVRHLMLIFSKAAS-----LPISTLRVKRMRTLLINDH--SLLNA------AILEELFRELTSLRALDFGGSYHSTR  220 (488)
Q Consensus       154 ~~~~vr~l~l~~~~~~~-----~~~~~~~~~~Lr~L~l~~~--~~~~~------~~~~~~~~~l~~Lr~L~Ls~~~~~~~  220 (488)
                      ....+++++++.+....     ++..+..+++|++|++++|  ..+..      ..+...+..+++|++|+|++|.+   
T Consensus        30 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l---  106 (386)
T 2ca6_A           30 EDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAF---  106 (386)
T ss_dssp             HCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCC---
T ss_pred             cCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcC---
Confidence            34567888888776633     3344668999999999986  22222      12334457899999999999984   


Q ss_pred             ccCCcccccccCccCchhhhhhccCcEeecCCCCCcc----cCchhhccc---------cccceeeccCCCCC-CCCC--
Q 038150          221 LLTPEVPRNIEKLVLPETLCELYNLEKLDISDCFNLK----ELPEGIGKL---------INVKHLLNRGTNSL-RYMP--  284 (488)
Q Consensus       221 ~~~~~lp~~i~~l~lp~~i~~L~~L~~L~l~~~~~~~----~lp~~l~~L---------~~L~~L~l~~~~~~-~~lp--  284 (488)
                        ...-..     .+|..+..+++|++|++++|....    .++..+..+         ++|++|++++|.+. ..+|  
T Consensus       107 --~~~~~~-----~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l  179 (386)
T 2ca6_A          107 --GPTAQE-----PLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEW  179 (386)
T ss_dssp             --CTTTHH-----HHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHH
T ss_pred             --CHHHHH-----HHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHH
Confidence              221000     267788999999999999987432    234445555         89999999999854 3344  


Q ss_pred             -CCCCCcccccccCceeecCCCCCCCCcccCcc-cccCCCcccccccccccCCCChhhhhHhhcccCCCCCceeecccCc
Q 038150          285 -VGIGRLTGLRTLGEFHVSAGGGVDGRKACRLE-SLKNLEHLQVCGISRLGDVSDVGEAKRLELDKKKYLSSLTLWFDKE  362 (488)
Q Consensus       285 -~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~-~l~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  362 (488)
                       ..+.++++|++|++.+|.+....   ....+. .+..+++|+.|.++...-.......++..+..+++|+.|++++|.+
T Consensus       180 ~~~l~~~~~L~~L~L~~n~l~~~g---~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i  256 (386)
T 2ca6_A          180 AKTFQSHRLLHTVKMVQNGIRPEG---IEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLL  256 (386)
T ss_dssp             HHHHHHCTTCCEEECCSSCCCHHH---HHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCC
T ss_pred             HHHHHhCCCcCEEECcCCCCCHhH---HHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCC
Confidence             35678889999999988765200   111223 5667888888888765421111245667888999999999999998


Q ss_pred             hhhhhhhccccchHHHhhhC--CCCCCCCEEEeccccCCC----CCchHH-HhccCCcEEeecCCCCCCCCC--C--CCC
Q 038150          363 EEEEGERRKNEDNQLLLEAL--RPPLNLKELEIEYYRGNT----VFPSWM-TSLTNLKSLDLSSCENCEQLP--P--LGK  431 (488)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~----~lp~~~-~~l~~L~~L~l~~~~~~~~~~--~--l~~  431 (488)
                      .....        ..++..+  +.+++|+.|+|++|.+..    .+|..+ ..+++|++|++++|......+  .  ...
T Consensus       257 ~~~~~--------~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~~~~~l~~~  328 (386)
T 2ca6_A          257 SARGA--------AAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREV  328 (386)
T ss_dssp             CHHHH--------HHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSHHHHHHHHH
T ss_pred             chhhH--------HHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchhHHHHHHHH
Confidence            64421        4466776  458999999999998876    477777 568999999999999776553  1  223


Q ss_pred             CCCcCeeeecccc
Q 038150          432 LQSLENLHIWRME  444 (488)
Q Consensus       432 l~~L~~L~l~~~~  444 (488)
                      +++++.+.+....
T Consensus       329 l~~~~~~~l~~~d  341 (386)
T 2ca6_A          329 FSTRGRGELDELD  341 (386)
T ss_dssp             HHHHTCCEECCCC
T ss_pred             hhhcCcchhhhcc
Confidence            5666666665443

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.69  E-value=1e-16  Score=151.56  Aligned_cols=192  Identities=19%  Similarity=0.229  Sum_probs=136.4

Q ss_pred             HhcCCccceeecCCCcccccccCCcccccccCccCchhhhhhccCcEeecCCCCCcccCchhhccccccceeeccCCCCC
Q 038150          201 FRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVLPETLCELYNLEKLDISDCFNLKELPEGIGKLINVKHLLNRGTNSL  280 (488)
Q Consensus       201 ~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~lp~~i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~L~l~~~~~~  280 (488)
                      +..+++|++|++++|.      +.         .+| .+..+++|++|++++|. +..+|. +..+++|++|++++|.+ 
T Consensus        37 ~~~l~~L~~L~l~~~~------i~---------~l~-~~~~l~~L~~L~L~~n~-i~~~~~-~~~l~~L~~L~L~~n~l-   97 (308)
T 1h6u_A           37 QADLDGITTLSAFGTG------VT---------TIE-GVQYLNNLIGLELKDNQ-ITDLAP-LKNLTKITELELSGNPL-   97 (308)
T ss_dssp             HHHHHTCCEEECTTSC------CC---------CCT-TGGGCTTCCEEECCSSC-CCCCGG-GTTCCSCCEEECCSCCC-
T ss_pred             HHHcCCcCEEEeeCCC------cc---------Cch-hhhccCCCCEEEccCCc-CCCChh-HccCCCCCEEEccCCcC-
Confidence            4566677777777776      43         333 46667777777777754 555555 67777777777777663 


Q ss_pred             CCCCCCCCCcccccccCceeecCCCCCCCCcccCcccccCCCcccccccccccCCCChhhhhHhhcccCCCCCceeeccc
Q 038150          281 RYMPVGIGRLTGLRTLGEFHVSAGGGVDGRKACRLESLKNLEHLQVCGISRLGDVSDVGEAKRLELDKKKYLSSLTLWFD  360 (488)
Q Consensus       281 ~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~  360 (488)
                      ..++ .++++++|++|++.+|.+.+                             +        ..+..+++|+.|++++|
T Consensus        98 ~~~~-~~~~l~~L~~L~l~~n~l~~-----------------------------~--------~~l~~l~~L~~L~l~~n  139 (308)
T 1h6u_A           98 KNVS-AIAGLQSIKTLDLTSTQITD-----------------------------V--------TPLAGLSNLQVLYLDLN  139 (308)
T ss_dssp             SCCG-GGTTCTTCCEEECTTSCCCC-----------------------------C--------GGGTTCTTCCEEECCSS
T ss_pred             CCch-hhcCCCCCCEEECCCCCCCC-----------------------------c--------hhhcCCCCCCEEECCCC
Confidence            3333 46666666666665554332                             0        12566788999999999


Q ss_pred             CchhhhhhhccccchHHHhhhCCCCCCCCEEEeccccCCCCCchHHHhccCCcEEeecCCCCCCCCCCCCCCCCcCeeee
Q 038150          361 KEEEEEGERRKNEDNQLLLEALRPPLNLKELEIEYYRGNTVFPSWMTSLTNLKSLDLSSCENCEQLPPLGKLQSLENLHI  440 (488)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l  440 (488)
                      .+...             + .+..+++|+.|++++|.+.. ++. +..+++|++|++++|.. ..++.+..+++|++|++
T Consensus       140 ~l~~~-------------~-~l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l-~~~~~l~~l~~L~~L~L  202 (308)
T 1h6u_A          140 QITNI-------------S-PLAGLTNLQYLSIGNAQVSD-LTP-LANLSKLTTLKADDNKI-SDISPLASLPNLIEVHL  202 (308)
T ss_dssp             CCCCC-------------G-GGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCC-CCCGGGGGCTTCCEEEC
T ss_pred             ccCcC-------------c-cccCCCCccEEEccCCcCCC-Chh-hcCCCCCCEEECCCCcc-CcChhhcCCCCCCEEEc
Confidence            87532             2 27788999999999999887 666 88999999999999985 44555888999999999


Q ss_pred             cccccceeeCccccCCCCCCCCCCCCCcccccCcccccccccccc
Q 038150          441 WRMESVKRVGDEFLGIESDHHGSSSSSSVIIAFPKLKSLSIEVLR  485 (488)
Q Consensus       441 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~p  485 (488)
                      ++|. +..++.                  ...+|+|+.|.+.+++
T Consensus       203 ~~N~-l~~~~~------------------l~~l~~L~~L~l~~N~  228 (308)
T 1h6u_A          203 KNNQ-ISDVSP------------------LANTSNLFIVTLTNQT  228 (308)
T ss_dssp             TTSC-CCBCGG------------------GTTCTTCCEEEEEEEE
T ss_pred             cCCc-cCcccc------------------ccCCCCCCEEEccCCe
Confidence            9987 555432                  3468999999988764

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.69  E-value=1.8e-17  Score=150.81  Aligned_cols=200  Identities=18%  Similarity=0.169  Sum_probs=123.3

Q ss_pred             ccceeecCCCcccccccCCcccccccCccCchhhhhhccCcEeecCCCCCcccCch-hhccccccceeeccC-CCCCCCC
Q 038150          206 SLRALDFGGSYHSTRLLTPEVPRNIEKLVLPETLCELYNLEKLDISDCFNLKELPE-GIGKLINVKHLLNRG-TNSLRYM  283 (488)
Q Consensus       206 ~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~lp~~i~~L~~L~~L~l~~~~~~~~lp~-~l~~L~~L~~L~l~~-~~~~~~l  283 (488)
                      .|++|++++|.      +..+|        +..++.+++|++|++++|..+..+|. .+..+++|++|++++ |. ...+
T Consensus        32 ~l~~L~l~~n~------l~~i~--------~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~-l~~i   96 (239)
T 2xwt_C           32 STQTLKLIETH------LRTIP--------SHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRN-LTYI   96 (239)
T ss_dssp             TCCEEEEESCC------CSEEC--------TTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETT-CCEE
T ss_pred             cccEEEEeCCc------ceEEC--------HHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCC-eeEc
Confidence            67777777777      44222        12466777788888877653555554 567778888888877 55 3344


Q ss_pred             C-CCCCCcccccccCceeecCCCCCCCCcccCcccccCCCcccccccccccCCCChhhhhHhhcccCCCCCceeeccc-C
Q 038150          284 P-VGIGRLTGLRTLGEFHVSAGGGVDGRKACRLESLKNLEHLQVCGISRLGDVSDVGEAKRLELDKKKYLSSLTLWFD-K  361 (488)
Q Consensus       284 p-~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~-~  361 (488)
                      | ..++++++|++|++.+|.+.+     .+.    +..++                         .++.|+.|++++| .
T Consensus        97 ~~~~f~~l~~L~~L~l~~n~l~~-----lp~----~~~l~-------------------------~L~~L~~L~l~~N~~  142 (239)
T 2xwt_C           97 DPDALKELPLLKFLGIFNTGLKM-----FPD----LTKVY-------------------------STDIFFILEITDNPY  142 (239)
T ss_dssp             CTTSEECCTTCCEEEEEEECCCS-----CCC----CTTCC-------------------------BCCSEEEEEEESCTT
T ss_pred             CHHHhCCCCCCCEEeCCCCCCcc-----ccc----ccccc-------------------------ccccccEEECCCCcc
Confidence            4 456777888888887776543     111    11111                         1122336666666 5


Q ss_pred             chhhhhhhccccchHHHhhhCCCCCCCC-EEEeccccCCCCCchHHHhccCCcEEeecCCCCCCCCC-C-CCCC-CCcCe
Q 038150          362 EEEEEGERRKNEDNQLLLEALRPPLNLK-ELEIEYYRGNTVFPSWMTSLTNLKSLDLSSCENCEQLP-P-LGKL-QSLEN  437 (488)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~-~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~-~-l~~l-~~L~~  437 (488)
                      +...            .+..+..+++|+ .|++++|.+.. +|......++|++|++++|...+.++ . ++.+ ++|+.
T Consensus       143 l~~i------------~~~~~~~l~~L~~~L~l~~n~l~~-i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~  209 (239)
T 2xwt_C          143 MTSI------------PVNAFQGLCNETLTLKLYNNGFTS-VQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSL  209 (239)
T ss_dssp             CCEE------------CTTTTTTTBSSEEEEECCSCCCCE-ECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSE
T ss_pred             hhhc------------CcccccchhcceeEEEcCCCCCcc-cCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcE
Confidence            4311            123466677888 88888877775 66554444788888888885344544 3 6777 88888


Q ss_pred             eeecccccceeeCccccCCCCCCCCCCCCCcccccCcccccccccccccC
Q 038150          438 LHIWRMESVKRVGDEFLGIESDHHGSSSSSSVIIAFPKLKSLSIEVLREL  487 (488)
Q Consensus       438 L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~p~L  487 (488)
                      |+++++. ++.+|.                   ..|++|+.|.+.+++.|
T Consensus       210 L~l~~N~-l~~l~~-------------------~~~~~L~~L~l~~~~~l  239 (239)
T 2xwt_C          210 LDVSQTS-VTALPS-------------------KGLEHLKELIARNTWTL  239 (239)
T ss_dssp             EECTTCC-CCCCCC-------------------TTCTTCSEEECTTC---
T ss_pred             EECCCCc-cccCCh-------------------hHhccCceeeccCccCC
Confidence            8888765 555542                   25778888888887764

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.68  E-value=5e-17  Score=152.17  Aligned_cols=199  Identities=18%  Similarity=-0.001  Sum_probs=141.5

Q ss_pred             ccccceeeEEEEecCCcCccccccccCcceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccCc
Q 038150          154 LDEKVRHLMLIFSKAASLPISTLRVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKL  233 (488)
Q Consensus       154 ~~~~vr~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l  233 (488)
                      ....++.+.+..+....+|..+.  +++++|++++| .+.. ..+..|..+++|++|+|++|.      +..        
T Consensus         8 ~l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N-~l~~-~~~~~~~~l~~L~~L~L~~n~------l~~--------   69 (290)
T 1p9a_G            8 KVASHLEVNCDKRNLTALPPDLP--KDTTILHLSEN-LLYT-FSLATLMPYTRLTQLNLDRAE------LTK--------   69 (290)
T ss_dssp             CSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTS-CCSE-EEGGGGTTCTTCCEEECTTSC------CCE--------
T ss_pred             ccCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCC-cCCc-cCHHHhhcCCCCCEEECCCCc------cCc--------
Confidence            34566778777777788886653  79999999998 5554 556678999999999999999      553        


Q ss_pred             cCchhhhhhccCcEeecCCCCCcccCchhhccccccceeeccCCCCCCCCCCCCCCcccccccCceeecCCCCCCCCccc
Q 038150          234 VLPETLCELYNLEKLDISDCFNLKELPEGIGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGRKAC  313 (488)
Q Consensus       234 ~lp~~i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~~  313 (488)
                       +|.. +.+++|++|++++|. +..+|..+..+++|++|++++|.+....|..++++++|++|++.+|.+..     .+.
T Consensus        70 -~~~~-~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~-----~~~  141 (290)
T 1p9a_G           70 -LQVD-GTLPVLGTLDLSHNQ-LQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKT-----LPP  141 (290)
T ss_dssp             -EECC-SCCTTCCEEECCSSC-CSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCC-----CCT
T ss_pred             -ccCC-CCCCcCCEEECCCCc-CCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCc-----cCh
Confidence             3332 688999999999975 77899999999999999999999554444669999999999998886654     111


Q ss_pred             CcccccCCCcccccccccccCCCChhhhhHhhcccCCCCCceeecccCchhhhhhhccccchHHHh-hhCCCCCCCCEEE
Q 038150          314 RLESLKNLEHLQVCGISRLGDVSDVGEAKRLELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLL-EALRPPLNLKELE  392 (488)
Q Consensus       314 ~~~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~L~~L~  392 (488)
                                                    ..+..+++|+.|++++|++.             .++ ..+..+++|+.|+
T Consensus       142 ------------------------------~~~~~l~~L~~L~L~~N~l~-------------~l~~~~~~~l~~L~~L~  178 (290)
T 1p9a_G          142 ------------------------------GLLTPTPKLEKLSLANNNLT-------------ELPAGLLNGLENLDTLL  178 (290)
T ss_dssp             ------------------------------TTTTTCTTCCEEECTTSCCS-------------CCCTTTTTTCTTCCEEE
T ss_pred             ------------------------------hhcccccCCCEEECCCCcCC-------------ccCHHHhcCcCCCCEEE
Confidence                                          12234455666666666553             122 2344566666666


Q ss_pred             eccccCCCCCchHHHhccCCcEEeecCCCC
Q 038150          393 IEYYRGNTVFPSWMTSLTNLKSLDLSSCEN  422 (488)
Q Consensus       393 l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~  422 (488)
                      +++|.+.. +|..+..+++|+.|++++|+.
T Consensus       179 L~~N~l~~-ip~~~~~~~~L~~l~L~~Np~  207 (290)
T 1p9a_G          179 LQENSLYT-IPKGFFGSHLLPFAFLHGNPW  207 (290)
T ss_dssp             CCSSCCCC-CCTTTTTTCCCSEEECCSCCB
T ss_pred             CCCCcCCc-cChhhcccccCCeEEeCCCCc
Confidence            66666665 666666666666666666653

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.68  E-value=9.6e-17  Score=148.84  Aligned_cols=200  Identities=23%  Similarity=0.199  Sum_probs=123.5

Q ss_pred             ceeeEEEEecCCcCccccccccCcceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccCccCch
Q 038150          158 VRHLMLIFSKAASLPISTLRVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVLPE  237 (488)
Q Consensus       158 vr~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~lp~  237 (488)
                      .+.+++.......+|..+.  +++++|++.+| .+.. ..+..|.++++|++|++++|.      +.         .+|.
T Consensus        18 ~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n-~l~~-~~~~~~~~l~~L~~L~l~~n~------l~---------~i~~   78 (270)
T 2o6q_A           18 KNSVDCSSKKLTAIPSNIP--ADTKKLDLQSN-KLSS-LPSKAFHRLTKLRLLYLNDNK------LQ---------TLPA   78 (270)
T ss_dssp             TTEEECTTSCCSSCCSCCC--TTCSEEECCSS-CCSC-CCTTSSSSCTTCCEEECCSSC------CS---------CCCT
T ss_pred             CCEEEccCCCCCccCCCCC--CCCCEEECcCC-CCCe-eCHHHhcCCCCCCEEECCCCc------cC---------eeCh
Confidence            3455555555555665432  56777777776 3443 333446667777777777776      43         2333


Q ss_pred             h-hhhhccCcEeecCCCCCcccCch-hhccccccceeeccCCCCCCCCCCCCCCcccccccCceeecCCCCCCCCcccCc
Q 038150          238 T-LCELYNLEKLDISDCFNLKELPE-GIGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGRKACRL  315 (488)
Q Consensus       238 ~-i~~L~~L~~L~l~~~~~~~~lp~-~l~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~  315 (488)
                      . +..+++|++|++++|. +..+|. .+..+++|++|++++|.+....+..++++++|++|++.+|.+..          
T Consensus        79 ~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~----------  147 (270)
T 2o6q_A           79 GIFKELKNLETLWVTDNK-LQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQS----------  147 (270)
T ss_dssp             TTTSSCTTCCEEECCSSC-CCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC----------
T ss_pred             hhhcCCCCCCEEECCCCc-CCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCc----------
Confidence            2 3556777777777755 444443 34667777777777776444334446677777777766654332          


Q ss_pred             ccccCCCcccccccccccCCCChhhhhHhhcccCCCCCceeecccCchhhhhhhccccchHHHhhhCCCCCCCCEEEecc
Q 038150          316 ESLKNLEHLQVCGISRLGDVSDVGEAKRLELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKELEIEY  395 (488)
Q Consensus       316 ~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~  395 (488)
                                         ++      ...+..+++|+.|++++|.+...            .+..+..+++|+.|++++
T Consensus       148 -------------------~~------~~~~~~l~~L~~L~L~~n~l~~~------------~~~~~~~l~~L~~L~L~~  190 (270)
T 2o6q_A          148 -------------------LP------KGVFDKLTSLKELRLYNNQLKRV------------PEGAFDKLTELKTLKLDN  190 (270)
T ss_dssp             -------------------CC------TTTTTTCTTCCEEECCSSCCSCC------------CTTTTTTCTTCCEEECCS
T ss_pred             -------------------cC------HhHccCCcccceeEecCCcCcEe------------ChhHhccCCCcCEEECCC
Confidence                               11      12345667788888888876422            123467788889999988


Q ss_pred             ccCCCCCchHHHhccCCcEEeecCCCCCC
Q 038150          396 YRGNTVFPSWMTSLTNLKSLDLSSCENCE  424 (488)
Q Consensus       396 ~~~~~~lp~~~~~l~~L~~L~l~~~~~~~  424 (488)
                      |.+....+..+..+++|+.|++++|+..-
T Consensus       191 N~l~~~~~~~~~~l~~L~~L~l~~N~~~c  219 (270)
T 2o6q_A          191 NQLKRVPEGAFDSLEKLKMLQLQENPWDC  219 (270)
T ss_dssp             SCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             CcCCcCCHHHhccccCCCEEEecCCCeeC
Confidence            88877333456778889999998887443

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.66  E-value=3.5e-16  Score=160.80  Aligned_cols=214  Identities=22%  Similarity=0.166  Sum_probs=164.3

Q ss_pred             ccccceeeEEEEecCCcCccccccccCcceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccCc
Q 038150          154 LDEKVRHLMLIFSKAASLPISTLRVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKL  233 (488)
Q Consensus       154 ~~~~vr~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l  233 (488)
                      ....++.++++.+....+|.   .+++|++|++++| .+..  +|.   .+++|+.|++++|.      +.         
T Consensus        79 ~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N-~l~~--l~~---~l~~L~~L~L~~N~------l~---------  134 (622)
T 3g06_A           79 LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSN-PLTH--LPA---LPSGLCKLWIFGNQ------LT---------  134 (622)
T ss_dssp             CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSC-CCCC--CCC---CCTTCCEEECCSSC------CS---------
T ss_pred             cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCC-cCCC--CCC---CCCCcCEEECCCCC------CC---------
Confidence            45788999999999888886   6799999999998 5553  443   67899999999999      55         


Q ss_pred             cCchhhhhhccCcEeecCCCCCcccCchhhccccccceeeccCCCCCCCCCCCCCCcccccccCceeecCCCCCCCCccc
Q 038150          234 VLPETLCELYNLEKLDISDCFNLKELPEGIGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGRKAC  313 (488)
Q Consensus       234 ~lp~~i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~~  313 (488)
                      .+|..   +++|++|++++|. +..+|.   .+.+|+.|++++|. +..+|   ..+++|++|++.+|.+.+     .+.
T Consensus       135 ~lp~~---l~~L~~L~Ls~N~-l~~l~~---~~~~L~~L~L~~N~-l~~l~---~~~~~L~~L~Ls~N~l~~-----l~~  198 (622)
T 3g06_A          135 SLPVL---PPGLQELSVSDNQ-LASLPA---LPSELCKLWAYNNQ-LTSLP---MLPSGLQELSVSDNQLAS-----LPT  198 (622)
T ss_dssp             CCCCC---CTTCCEEECCSSC-CSCCCC---CCTTCCEEECCSSC-CSCCC---CCCTTCCEEECCSSCCSC-----CCC
T ss_pred             cCCCC---CCCCCEEECcCCc-CCCcCC---ccCCCCEEECCCCC-CCCCc---ccCCCCcEEECCCCCCCC-----CCC
Confidence            34432   4889999999975 667775   35789999999998 45577   457899999999887765     222


Q ss_pred             CcccccCCCccccccccc--ccCCCChhhhhHhhcccCCCCCceeecccCchhhhhhhccccchHHHhhhCCCCCCCCEE
Q 038150          314 RLESLKNLEHLQVCGISR--LGDVSDVGEAKRLELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKEL  391 (488)
Q Consensus       314 ~~~~l~~L~~L~~L~~~~--~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L  391 (488)
                      .      +++|+.|.+..  +..++          ..+++|+.|++++|.+..             +|   ..+++|+.|
T Consensus       199 ~------~~~L~~L~L~~N~l~~l~----------~~~~~L~~L~Ls~N~L~~-------------lp---~~l~~L~~L  246 (622)
T 3g06_A          199 L------PSELYKLWAYNNRLTSLP----------ALPSGLKELIVSGNRLTS-------------LP---VLPSELKEL  246 (622)
T ss_dssp             C------CTTCCEEECCSSCCSSCC----------CCCTTCCEEECCSSCCSC-------------CC---CCCTTCCEE
T ss_pred             c------cchhhEEECcCCcccccC----------CCCCCCCEEEccCCccCc-------------CC---CCCCcCcEE
Confidence            2      34566655543  23222          124789999999998742             33   456899999


Q ss_pred             EeccccCCCCCchHHHhccCCcEEeecCCCCCCCCCC-CCCCCCcCeeeecccc
Q 038150          392 EIEYYRGNTVFPSWMTSLTNLKSLDLSSCENCEQLPP-LGKLQSLENLHIWRME  444 (488)
Q Consensus       392 ~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~-l~~l~~L~~L~l~~~~  444 (488)
                      ++++|.+.. +|.   .+++|+.|++++|.+. .+|. ++.+++|+.|++++|+
T Consensus       247 ~Ls~N~L~~-lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~  295 (622)
T 3g06_A          247 MVSGNRLTS-LPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNP  295 (622)
T ss_dssp             ECCSSCCSC-CCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCC
T ss_pred             ECCCCCCCc-CCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCC
Confidence            999998887 877   6789999999999865 6776 8899999999999987

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.65  E-value=6e-17  Score=156.93  Aligned_cols=247  Identities=13%  Similarity=0.028  Sum_probs=147.3

Q ss_pred             CccccccccCcceecccccchhhhhhHH----HHHhcCC-ccceeecCCCcccccccCCcccccccCccCchhhhhh---
Q 038150          171 LPISTLRVKRMRTLLINDHSLLNAAILE----ELFRELT-SLRALDFGGSYHSTRLLTPEVPRNIEKLVLPETLCEL---  242 (488)
Q Consensus       171 ~~~~~~~~~~Lr~L~l~~~~~~~~~~~~----~~~~~l~-~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~lp~~i~~L---  242 (488)
                      +|..+...++|++|++++| .++. ..+    ..+..++ +|++|+|++|.+     ..         ..+..++.+   
T Consensus        14 ~~~~~~~~~~L~~L~Ls~n-~l~~-~~~~~l~~~l~~~~~~L~~L~Ls~N~l-----~~---------~~~~~l~~~l~~   77 (362)
T 3goz_A           14 VEEFTSIPHGVTSLDLSLN-NLYS-ISTVELIQAFANTPASVTSLNLSGNSL-----GF---------KNSDELVQILAA   77 (362)
T ss_dssp             HHHHHTSCTTCCEEECTTS-CGGG-SCHHHHHHHHHTCCTTCCEEECCSSCG-----GG---------SCHHHHHHHHHT
T ss_pred             HHHHHhCCCCceEEEccCC-CCCh-HHHHHHHHHHHhCCCceeEEECcCCCC-----CH---------HHHHHHHHHHhc
Confidence            3444445566999999987 4544 332    5677888 899999999884     22         335566665   


Q ss_pred             --ccCcEeecCCCCCcccCchhhc----cc-cccceeeccCCCCCCCCCCC----CCC-cccccccCceeecCCCCCCCC
Q 038150          243 --YNLEKLDISDCFNLKELPEGIG----KL-INVKHLLNRGTNSLRYMPVG----IGR-LTGLRTLGEFHVSAGGGVDGR  310 (488)
Q Consensus       243 --~~L~~L~l~~~~~~~~lp~~l~----~L-~~L~~L~l~~~~~~~~lp~~----i~~-L~~L~~L~l~~~~~~~~~~~~  310 (488)
                        ++|++|++++|......+..+.    .+ ++|++|++++|.+....+..    +.. .++|++|++++|.+.+..   
T Consensus        78 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~---  154 (362)
T 3goz_A           78 IPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKS---  154 (362)
T ss_dssp             SCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSC---
T ss_pred             cCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHH---
Confidence              8899999999874444444443    34 78999999988854333322    233 258888888887665311   


Q ss_pred             cccCcccccCCC-cccccccccccCCCChhhhhHhhcccC-CCCCceeecccCchhhhhhhccccchHHHhhhCCC-CCC
Q 038150          311 KACRLESLKNLE-HLQVCGISRLGDVSDVGEAKRLELDKK-KYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRP-PLN  387 (488)
Q Consensus       311 ~~~~~~~l~~L~-~L~~L~~~~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  387 (488)
                      .......+..++ +|+.|+++...-.......+...+..+ ++|+.|++++|.+....        ...++..+.. .++
T Consensus       155 ~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~--------~~~l~~~l~~~~~~  226 (362)
T 3goz_A          155 SDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKS--------YAELAYIFSSIPNH  226 (362)
T ss_dssp             HHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSC--------HHHHHHHHHHSCTT
T ss_pred             HHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhH--------HHHHHHHHhcCCCC
Confidence            011112223343 666666654432222233344455555 47888888877765321        1334555544 347


Q ss_pred             CCEEEeccccCCCCCch----HHHhccCCcEEeecCCCCCC-------CCC-CCCCCCCcCeeeecccc
Q 038150          388 LKELEIEYYRGNTVFPS----WMTSLTNLKSLDLSSCENCE-------QLP-PLGKLQSLENLHIWRME  444 (488)
Q Consensus       388 L~~L~l~~~~~~~~lp~----~~~~l~~L~~L~l~~~~~~~-------~~~-~l~~l~~L~~L~l~~~~  444 (488)
                      |+.|+|++|.+...-+.    .+..+++|+.|++++|....       .++ .+..+++|+.|++++|.
T Consensus       227 L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~  295 (362)
T 3goz_A          227 VVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE  295 (362)
T ss_dssp             CCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred             ceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence            88888887777652222    22456778888887776211       112 25667777777777776

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.65  E-value=3e-16  Score=148.58  Aligned_cols=206  Identities=16%  Similarity=0.109  Sum_probs=153.0

Q ss_pred             hhccCcEeecCCCCCcccCchhh--ccccccceeeccCCCCCCCCC----CCCCCcccccccCceeecCCCCCCCCcccC
Q 038150          241 ELYNLEKLDISDCFNLKELPEGI--GKLINVKHLLNRGTNSLRYMP----VGIGRLTGLRTLGEFHVSAGGGVDGRKACR  314 (488)
Q Consensus       241 ~L~~L~~L~l~~~~~~~~lp~~l--~~L~~L~~L~l~~~~~~~~lp----~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~  314 (488)
                      .+.+|++|++++|......|..+  +.+++|++|++++|.+....+    ..+..+++|++|++.+|.+..       ..
T Consensus        89 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~-------~~  161 (310)
T 4glp_A           89 AYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPA-------FS  161 (310)
T ss_dssp             HHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCC-------CC
T ss_pred             ccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcch-------hh
Confidence            46789999999998777788887  899999999999998665444    235679999999999998754       12


Q ss_pred             cccccCCCcccccccccccCCCChhhhhHhhcccCCCCCceeecccCchhhhhhhccccchHHHhhh-CCCCCCCCEEEe
Q 038150          315 LESLKNLEHLQVCGISRLGDVSDVGEAKRLELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEA-LRPPLNLKELEI  393 (488)
Q Consensus       315 ~~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~L~~L~l  393 (488)
                      ...+..+++|+.|+++...-.....-.....+..+++|+.|++++|.+...          ...+.. +..+++|++|++
T Consensus       162 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l----------~~~~~~l~~~l~~L~~L~L  231 (310)
T 4glp_A          162 CEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETP----------TGVCAALAAAGVQPHSLDL  231 (310)
T ss_dssp             TTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCH----------HHHHHHHHHHTCCCSSEEC
T ss_pred             HHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCch----------HHHHHHHHhcCCCCCEEEC
Confidence            245567788888888665421110000112346789999999999998533          222333 467789999999


Q ss_pred             ccccCCCCCchHHHhc---cCCcEEeecCCCCCCCCCC-CCCCCCcCeeeecccccceeeCccccCCCCCCCCCCCCCcc
Q 038150          394 EYYRGNTVFPSWMTSL---TNLKSLDLSSCENCEQLPP-LGKLQSLENLHIWRMESVKRVGDEFLGIESDHHGSSSSSSV  469 (488)
Q Consensus       394 ~~~~~~~~lp~~~~~l---~~L~~L~l~~~~~~~~~~~-l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  469 (488)
                      ++|.+....|..+..+   ++|++|++++|... .+|. +.  ++|++|++++|. ++.+|.                  
T Consensus       232 s~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~-l~~~~~------------------  289 (310)
T 4glp_A          232 SHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNR-LNRAPQ------------------  289 (310)
T ss_dssp             TTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCC-CCSCCC------------------
T ss_pred             CCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCc-CCCCch------------------
Confidence            9999988557777665   79999999999866 6665 54  899999999987 554432                  


Q ss_pred             cccCcccccccccccc
Q 038150          470 IIAFPKLKSLSIEVLR  485 (488)
Q Consensus       470 ~~~~p~L~~L~l~~~p  485 (488)
                      ...+|+|+.|.+.+.+
T Consensus       290 ~~~l~~L~~L~L~~N~  305 (310)
T 4glp_A          290 PDELPEVDNLTLDGNP  305 (310)
T ss_dssp             TTSCCCCSCEECSSTT
T ss_pred             hhhCCCccEEECcCCC
Confidence            3468999999998865

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.64  E-value=4.3e-16  Score=145.95  Aligned_cols=149  Identities=20%  Similarity=0.224  Sum_probs=68.5

Q ss_pred             hhhhccCcEeecCCCCCcccCchhhccccccceeeccCCCCCCCCCCCCCCcccccccCceeecCCCCCCCCcccCcccc
Q 038150          239 LCELYNLEKLDISDCFNLKELPEGIGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGRKACRLESL  318 (488)
Q Consensus       239 i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l  318 (488)
                      ++.+++|++|++++|. +..+|. +.++++|++|++++|.+ ..+| .++++++|++|++.+|.+.+         +..+
T Consensus        64 ~~~l~~L~~L~L~~n~-l~~~~~-l~~l~~L~~L~l~~n~l-~~~~-~l~~l~~L~~L~L~~n~i~~---------~~~l  130 (291)
T 1h6t_A           64 IQYLPNVTKLFLNGNK-LTDIKP-LANLKNLGWLFLDENKV-KDLS-SLKDLKKLKSLSLEHNGISD---------INGL  130 (291)
T ss_dssp             GGGCTTCCEEECCSSC-CCCCGG-GTTCTTCCEEECCSSCC-CCGG-GGTTCTTCCEEECTTSCCCC---------CGGG
T ss_pred             HhcCCCCCEEEccCCc-cCCCcc-cccCCCCCEEECCCCcC-CCCh-hhccCCCCCEEECCCCcCCC---------Chhh
Confidence            4555555555555543 344443 55555555555555552 2222 25555555555555544332         1122


Q ss_pred             cCCCcccccccccccCCCChhhhhHhhcccCCCCCceeecccCchhhhhhhccccchHHHhhhCCCCCCCCEEEeccccC
Q 038150          319 KNLEHLQVCGISRLGDVSDVGEAKRLELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKELEIEYYRG  398 (488)
Q Consensus       319 ~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  398 (488)
                      ..+++|+.|++....- ...     ..+..+++|+.|++++|.+...             +. +..+++|+.|++++|.+
T Consensus       131 ~~l~~L~~L~l~~n~l-~~~-----~~l~~l~~L~~L~L~~N~l~~~-------------~~-l~~l~~L~~L~L~~N~i  190 (291)
T 1h6t_A          131 VHLPQLESLYLGNNKI-TDI-----TVLSRLTKLDTLSLEDNQISDI-------------VP-LAGLTKLQNLYLSKNHI  190 (291)
T ss_dssp             GGCTTCCEEECCSSCC-CCC-----GGGGGCTTCSEEECCSSCCCCC-------------GG-GTTCTTCCEEECCSSCC
T ss_pred             cCCCCCCEEEccCCcC-Ccc-----hhhccCCCCCEEEccCCccccc-------------hh-hcCCCccCEEECCCCcC
Confidence            2222233222221110 000     1234455555555555554321             11 44555555555555555


Q ss_pred             CCCCchHHHhccCCcEEeecCCCC
Q 038150          399 NTVFPSWMTSLTNLKSLDLSSCEN  422 (488)
Q Consensus       399 ~~~lp~~~~~l~~L~~L~l~~~~~  422 (488)
                      .. +|. +..+++|+.|++++|..
T Consensus       191 ~~-l~~-l~~l~~L~~L~l~~n~i  212 (291)
T 1h6t_A          191 SD-LRA-LAGLKNLDVLELFSQEC  212 (291)
T ss_dssp             CB-CGG-GTTCTTCSEEEEEEEEE
T ss_pred             CC-Chh-hccCCCCCEEECcCCcc
Confidence            54 433 45555555555555543

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.63  E-value=1.8e-16  Score=144.17  Aligned_cols=207  Identities=14%  Similarity=0.115  Sum_probs=148.1

Q ss_pred             cCCcCccccccccCcceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccCccCc-hhhhhhccC
Q 038150          167 KAASLPISTLRVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVLP-ETLCELYNL  245 (488)
Q Consensus       167 ~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~lp-~~i~~L~~L  245 (488)
                      ....+|. +  .+++++|++.+| .+.. ..+..|..+++|++|++++|..     +.         .+| ..++++++|
T Consensus        22 ~l~~ip~-~--~~~l~~L~l~~n-~l~~-i~~~~~~~l~~L~~L~l~~n~~-----l~---------~i~~~~f~~l~~L   82 (239)
T 2xwt_C           22 DIQRIPS-L--PPSTQTLKLIET-HLRT-IPSHAFSNLPNISRIYVSIDVT-----LQ---------QLESHSFYNLSKV   82 (239)
T ss_dssp             SCSSCCC-C--CTTCCEEEEESC-CCSE-ECTTTTTTCTTCCEEEEECCSS-----CC---------EECTTTEESCTTC
T ss_pred             CccccCC-C--CCcccEEEEeCC-cceE-ECHHHccCCCCCcEEeCCCCCC-----cc---------eeCHhHcCCCcCC
Confidence            3566776 3  358999999997 5654 4555688999999999999962     33         333 357788999


Q ss_pred             cEeecCCCCCcccCc-hhhccccccceeeccCCCCCCCCCCCCCCccccc---ccCceee-cCCCCCCCCcccCcccccC
Q 038150          246 EKLDISDCFNLKELP-EGIGKLINVKHLLNRGTNSLRYMPVGIGRLTGLR---TLGEFHV-SAGGGVDGRKACRLESLKN  320 (488)
Q Consensus       246 ~~L~l~~~~~~~~lp-~~l~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~---~L~l~~~-~~~~~~~~~~~~~~~~l~~  320 (488)
                      ++|++++|+.+..+| ..+..+++|++|++++|.+ ..+|. ++.+++|+   +|++.+| .+..               
T Consensus        83 ~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l-~~lp~-~~~l~~L~~L~~L~l~~N~~l~~---------------  145 (239)
T 2xwt_C           83 THIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGL-KMFPD-LTKVYSTDIFFILEITDNPYMTS---------------  145 (239)
T ss_dssp             CEEEEEEETTCCEECTTSEECCTTCCEEEEEEECC-CSCCC-CTTCCBCCSEEEEEEESCTTCCE---------------
T ss_pred             cEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCC-ccccc-cccccccccccEEECCCCcchhh---------------
Confidence            999999833466665 4678999999999999984 45776 78888887   8888776 4332               


Q ss_pred             CCcccccccccccCCCChhhhhHhhcccCCCCC-ceeecccCchhhhhhhccccchHHHhhhCCCCCCCCEEEecccc-C
Q 038150          321 LEHLQVCGISRLGDVSDVGEAKRLELDKKKYLS-SLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKELEIEYYR-G  398 (488)
Q Consensus       321 L~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~-~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~  398 (488)
                                    ++      ...+..+++|+ .|++++|.+.             .++......++|+.|++++|. +
T Consensus       146 --------------i~------~~~~~~l~~L~~~L~l~~n~l~-------------~i~~~~~~~~~L~~L~L~~n~~l  192 (239)
T 2xwt_C          146 --------------IP------VNAFQGLCNETLTLKLYNNGFT-------------SVQGYAFNGTKLDAVYLNKNKYL  192 (239)
T ss_dssp             --------------EC------TTTTTTTBSSEEEEECCSCCCC-------------EECTTTTTTCEEEEEECTTCTTC
T ss_pred             --------------cC------cccccchhcceeEEEcCCCCCc-------------ccCHhhcCCCCCCEEEcCCCCCc
Confidence                          00      02345567788 8888888763             233333333789999999995 7


Q ss_pred             CCCCchHHHhc-cCCcEEeecCCCCCCCCCCCCCCCCcCeeeecccc
Q 038150          399 NTVFPSWMTSL-TNLKSLDLSSCENCEQLPPLGKLQSLENLHIWRME  444 (488)
Q Consensus       399 ~~~lp~~~~~l-~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~  444 (488)
                      ....+..+..+ ++|+.|++++|... .+|.. .+++|+.|++.++.
T Consensus       193 ~~i~~~~~~~l~~~L~~L~l~~N~l~-~l~~~-~~~~L~~L~l~~~~  237 (239)
T 2xwt_C          193 TVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSK-GLEHLKELIARNTW  237 (239)
T ss_dssp             CEECTTTTTTCSBCCSEEECTTCCCC-CCCCT-TCTTCSEEECTTC-
T ss_pred             ccCCHHHhhccccCCcEEECCCCccc-cCChh-HhccCceeeccCcc
Confidence            76234567788 99999999998754 45543 68899999998775

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.62  E-value=6.8e-16  Score=161.07  Aligned_cols=169  Identities=17%  Similarity=0.005  Sum_probs=104.9

Q ss_pred             chhhccccccceeeccCCCCCCCCCCCCCCcccccccCceeecCCCCCCCCc------------------ccCcccccCC
Q 038150          260 PEGIGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGRK------------------ACRLESLKNL  321 (488)
Q Consensus       260 p~~l~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~------------------~~~~~~l~~L  321 (488)
                      |.....+.+|++|++..+. ...++..+..+++|+.+++..+......+...                  ......+..+
T Consensus       390 ~~~~~~~~~L~~L~~~~~~-~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~  468 (635)
T 4g8a_A          390 SQSDFGTISLKYLDLSFNG-VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGL  468 (635)
T ss_dssp             CHHHHSCSCCCEEECCSCS-EEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTC
T ss_pred             ccchhhhhhhhhhhccccc-cccccccccccccccchhhhhccccccccccccccccccccccccccccccccccccccc
Confidence            3344456677777777765 23344556666666666665443222100000                  0001122334


Q ss_pred             CcccccccccccCCCChhhhhHhhcccCCCCCceeecccCchhhhhhhccccchHHHhhhCCCCCCCCEEEeccccCCCC
Q 038150          322 EHLQVCGISRLGDVSDVGEAKRLELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKELEIEYYRGNTV  401 (488)
Q Consensus       322 ~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  401 (488)
                      +.|+.|.+......   ....+..+..+++|+.|++++|++.            ...|..+..+++|+.|+|++|.+...
T Consensus       469 ~~L~~L~Ls~N~~~---~~~~~~~~~~l~~L~~L~Ls~N~L~------------~l~~~~f~~l~~L~~L~Ls~N~l~~l  533 (635)
T 4g8a_A          469 SSLEVLKMAGNSFQ---ENFLPDIFTELRNLTFLDLSQCQLE------------QLSPTAFNSLSSLQVLNMSHNNFFSL  533 (635)
T ss_dssp             TTCCEEECTTCEEG---GGEECSCCTTCTTCCEEECTTSCCC------------EECTTTTTTCTTCCEEECTTSCCCBC
T ss_pred             hhhhhhhhhhcccc---cccCchhhhhccccCEEECCCCccC------------CcChHHHcCCCCCCEEECCCCcCCCC
Confidence            44444444322110   1112345677888999999988875            23356788889999999999988874


Q ss_pred             CchHHHhccCCcEEeecCCCCCCCCCC-CCCC-CCcCeeeecccc
Q 038150          402 FPSWMTSLTNLKSLDLSSCENCEQLPP-LGKL-QSLENLHIWRME  444 (488)
Q Consensus       402 lp~~~~~l~~L~~L~l~~~~~~~~~~~-l~~l-~~L~~L~l~~~~  444 (488)
                      .|..+..+++|++|++++|......|. +..+ ++|++|++++|+
T Consensus       534 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np  578 (635)
T 4g8a_A          534 DTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND  578 (635)
T ss_dssp             CCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCC
T ss_pred             ChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCC
Confidence            466788899999999999987776665 7777 579999998765

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.62  E-value=1.4e-15  Score=156.05  Aligned_cols=173  Identities=19%  Similarity=0.178  Sum_probs=111.2

Q ss_pred             HhcCCccceeecCCCcccccccCCcccccccCccCchhhhhhccCcEeecCCCCCcccCchhhccccccceeeccCCCCC
Q 038150          201 FRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVLPETLCELYNLEKLDISDCFNLKELPEGIGKLINVKHLLNRGTNSL  280 (488)
Q Consensus       201 ~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~lp~~i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~L~l~~~~~~  280 (488)
                      +..+++|+.|++++|.      +.         .+| .++.+++|++|+|++|. +..+|. +..+++|++|++++|.+ 
T Consensus        39 ~~~L~~L~~L~l~~n~------i~---------~l~-~l~~l~~L~~L~Ls~N~-l~~~~~-l~~l~~L~~L~Ls~N~l-   99 (605)
T 1m9s_A           39 QNELNSIDQIIANNSD------IK---------SVQ-GIQYLPNVTKLFLNGNK-LTDIKP-LTNLKNLGWLFLDENKI-   99 (605)
T ss_dssp             HHHHTTCCCCBCTTCC------CC---------CCT-TGGGCTTCCEEECTTSC-CCCCGG-GGGCTTCCEEECCSSCC-
T ss_pred             hhcCCCCCEEECcCCC------CC---------CCh-HHccCCCCCEEEeeCCC-CCCChh-hccCCCCCEEECcCCCC-
Confidence            4567777777887777      43         333 46777788888887765 555554 77777888888877763 


Q ss_pred             CCCCCCCCCcccccccCceeecCCCCCCCCcccCcccccCCCcccccccccccCCCChhhhhHhhcccCCCCCceeeccc
Q 038150          281 RYMPVGIGRLTGLRTLGEFHVSAGGGVDGRKACRLESLKNLEHLQVCGISRLGDVSDVGEAKRLELDKKKYLSSLTLWFD  360 (488)
Q Consensus       281 ~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~  360 (488)
                      ..+| .++.+++|++|++.+|.+.+         +..+..+++|+.|.++...-.. .     ..+..+++|+.|++++|
T Consensus       100 ~~l~-~l~~l~~L~~L~Ls~N~l~~---------l~~l~~l~~L~~L~Ls~N~l~~-l-----~~l~~l~~L~~L~Ls~N  163 (605)
T 1m9s_A          100 KDLS-SLKDLKKLKSLSLEHNGISD---------INGLVHLPQLESLYLGNNKITD-I-----TVLSRLTKLDTLSLEDN  163 (605)
T ss_dssp             CCCT-TSTTCTTCCEEECTTSCCCC---------CGGGGGCTTCSEEECCSSCCCC-C-----GGGGSCTTCSEEECCSS
T ss_pred             CCCh-hhccCCCCCEEEecCCCCCC---------CccccCCCccCEEECCCCccCC-c-----hhhcccCCCCEEECcCC
Confidence            3343 57777777777777766543         2334455555555554332111 1     34566777777777777


Q ss_pred             CchhhhhhhccccchHHHhhhCCCCCCCCEEEeccccCCCCCchHHHhccCCcEEeecCCCCCC
Q 038150          361 KEEEEEGERRKNEDNQLLLEALRPPLNLKELEIEYYRGNTVFPSWMTSLTNLKSLDLSSCENCE  424 (488)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~  424 (488)
                      .+...             +. +..+++|+.|+|++|.+.. +| .+..+++|+.|+|++|....
T Consensus       164 ~l~~~-------------~~-l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~L~~N~l~~  211 (605)
T 1m9s_A          164 QISDI-------------VP-LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLN  211 (605)
T ss_dssp             CCCCC-------------GG-GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEECCSEEEEC
T ss_pred             cCCCc-------------hh-hccCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEccCCcCcC
Confidence            76422             12 6667777777777777766 54 46677777777777776544

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.62  E-value=3.1e-15  Score=137.07  Aligned_cols=62  Identities=19%  Similarity=0.028  Sum_probs=37.2

Q ss_pred             ccCcEeecCCCCCcccCchhhccccccceeeccCCCCCCCCCCCCCCcccccccCceeecCC
Q 038150          243 YNLEKLDISDCFNLKELPEGIGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFHVSAG  304 (488)
Q Consensus       243 ~~L~~L~l~~~~~~~~lp~~l~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~  304 (488)
                      .++++|++++|......|..+.++++|++|++++|.+....|..+.++++|++|++.+|.+.
T Consensus        35 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~   96 (251)
T 3m19_A           35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA   96 (251)
T ss_dssp             TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCC
T ss_pred             CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCccc
Confidence            35667777775533333445666777777777776644444444666677777766665443

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.61  E-value=1.1e-16  Score=165.85  Aligned_cols=213  Identities=13%  Similarity=0.025  Sum_probs=96.5

Q ss_pred             hhhhhhccCcEeecCCCCCcccCchhhccccccceeeccCCCCC---CCCCCCCCCcccccccCceeecCCCCCCCCccc
Q 038150          237 ETLCELYNLEKLDISDCFNLKELPEGIGKLINVKHLLNRGTNSL---RYMPVGIGRLTGLRTLGEFHVSAGGGVDGRKAC  313 (488)
Q Consensus       237 ~~i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~L~l~~~~~~---~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~~  313 (488)
                      ..+.++++|++|++++|. +..+|..+..+++|++|.++.+...   ...+..++.+++|+.|.+..+...        .
T Consensus       214 ~~~~~~~~L~~L~L~~~~-~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~--------~  284 (592)
T 3ogk_B          214 TIARNCRSLVSVKVGDFE-ILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPN--------E  284 (592)
T ss_dssp             HHHHHCTTCCEEECSSCB-GGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTT--------T
T ss_pred             HHHhhCCCCcEEeccCcc-HHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchh--------H
Confidence            334445555555555543 3334555555555555555432211   112233444555555544332111        1


Q ss_pred             CcccccCCCcccccccccccCCCChhhhhHhhcccCCCCCceeecccCchhhhhhhccccchHHHhhhCCCCCCCCEEEe
Q 038150          314 RLESLKNLEHLQVCGISRLGDVSDVGEAKRLELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKELEI  393 (488)
Q Consensus       314 ~~~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l  393 (488)
                      ....+..+++|+.|.+..+. +.  ...+...+..+++|+.|+++.+ +..           ..++.....+++|++|++
T Consensus       285 l~~~~~~~~~L~~L~Ls~~~-l~--~~~~~~~~~~~~~L~~L~L~~~-~~~-----------~~l~~~~~~~~~L~~L~L  349 (592)
T 3ogk_B          285 MPILFPFAAQIRKLDLLYAL-LE--TEDHCTLIQKCPNLEVLETRNV-IGD-----------RGLEVLAQYCKQLKRLRI  349 (592)
T ss_dssp             GGGGGGGGGGCCEEEETTCC-CC--HHHHHHHHTTCTTCCEEEEEGG-GHH-----------HHHHHHHHHCTTCCEEEE
T ss_pred             HHHHHhhcCCCcEEecCCCc-CC--HHHHHHHHHhCcCCCEEeccCc-cCH-----------HHHHHHHHhCCCCCEEEe
Confidence            11122334455555554433 21  1122233455666666666622 211           222333344566777777


Q ss_pred             cc----------ccCCC--CCchHHHhccCCcEEeecCCCCCCCCCC-CCC-CCCcCeeeecc---cccceeeCcc-ccC
Q 038150          394 EY----------YRGNT--VFPSWMTSLTNLKSLDLSSCENCEQLPP-LGK-LQSLENLHIWR---MESVKRVGDE-FLG  455 (488)
Q Consensus       394 ~~----------~~~~~--~lp~~~~~l~~L~~L~l~~~~~~~~~~~-l~~-l~~L~~L~l~~---~~~l~~~~~~-~~~  455 (488)
                      ++          |...+  .++.....+++|++|+++.+......+. ++. +++|+.|++.+   |..++..|.+ .+.
T Consensus       350 ~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~  429 (592)
T 3ogk_B          350 ERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVR  429 (592)
T ss_dssp             ECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHH
T ss_pred             ecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHH
Confidence            63          22211  0222234566777777754443332222 333 67777777763   3333332211 000


Q ss_pred             CCCCCCCCCCCCcccccCcccccccccccc
Q 038150          456 IESDHHGSSSSSSVIIAFPKLKSLSIEVLR  485 (488)
Q Consensus       456 ~~~~~~~~~~~~~~~~~~p~L~~L~l~~~p  485 (488)
                                  .....+++|++|.++.|.
T Consensus       430 ------------~~~~~~~~L~~L~L~~~~  447 (592)
T 3ogk_B          430 ------------SLLIGCKKLRRFAFYLRQ  447 (592)
T ss_dssp             ------------HHHHHCTTCCEEEEECCG
T ss_pred             ------------HHHHhCCCCCEEEEecCC
Confidence                        013458899999987665

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.61  E-value=6.9e-17  Score=156.50  Aligned_cols=246  Identities=11%  Similarity=0.053  Sum_probs=165.0

Q ss_pred             cccccceeeEEEEecCCcCc-----ccccccc-CcceecccccchhhhhhHHHHHhcC-----CccceeecCCCcccccc
Q 038150          153 ALDEKVRHLMLIFSKAASLP-----ISTLRVK-RMRTLLINDHSLLNAAILEELFREL-----TSLRALDFGGSYHSTRL  221 (488)
Q Consensus       153 ~~~~~vr~l~l~~~~~~~~~-----~~~~~~~-~Lr~L~l~~~~~~~~~~~~~~~~~l-----~~Lr~L~Ls~~~~~~~~  221 (488)
                      .....+++++++.+.....+     ..+..++ +|++|++++| .++. ..+..+..+     ++|++|+|++|.+    
T Consensus        19 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~-~~~~~l~~~l~~~~~~L~~L~Ls~n~l----   92 (362)
T 3goz_A           19 SIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGN-SLGF-KNSDELVQILAAIPANVTSLNLSGNFL----   92 (362)
T ss_dssp             TSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSS-CGGG-SCHHHHHHHHHTSCTTCCEEECCSSCG----
T ss_pred             hCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCC-CCCH-HHHHHHHHHHhccCCCccEEECcCCcC----
Confidence            34556899999988886665     4566777 8999999998 5554 333344443     9999999999994    


Q ss_pred             cCCcccccccCccCchhhhh----h-ccCcEeecCCCCCcccCchhh----cc-ccccceeeccCCCCCC----CCCCCC
Q 038150          222 LTPEVPRNIEKLVLPETLCE----L-YNLEKLDISDCFNLKELPEGI----GK-LINVKHLLNRGTNSLR----YMPVGI  287 (488)
Q Consensus       222 ~~~~lp~~i~~l~lp~~i~~----L-~~L~~L~l~~~~~~~~lp~~l----~~-L~~L~~L~l~~~~~~~----~lp~~i  287 (488)
                       ..         ..+..++.    + ++|++|++++|.....-+..+    .. .++|++|++++|.+..    .++..+
T Consensus        93 -~~---------~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l  162 (362)
T 3goz_A           93 -SY---------KSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQIL  162 (362)
T ss_dssp             -GG---------SCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHH
T ss_pred             -Ch---------HHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHH
Confidence             32         33344444    4 899999999987433333333    33 3699999999998553    223334


Q ss_pred             CCcc-cccccCceeecCCCCCCCCcccCcccccCC-CcccccccccccCCCChhhhhHhhccc-CCCCCceeecccCchh
Q 038150          288 GRLT-GLRTLGEFHVSAGGGVDGRKACRLESLKNL-EHLQVCGISRLGDVSDVGEAKRLELDK-KKYLSSLTLWFDKEEE  364 (488)
Q Consensus       288 ~~L~-~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L-~~L~~L~~~~~~~~~~~~~~~~~~l~~-l~~L~~L~l~~~~~~~  364 (488)
                      ..++ +|++|++.+|.+.+..   .......+... ++|+.|+++...-.......++..+.. .++|+.|++++|.+..
T Consensus       163 ~~~~~~L~~L~Ls~n~l~~~~---~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~  239 (362)
T 3goz_A          163 AAIPANVNSLNLRGNNLASKN---CAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHG  239 (362)
T ss_dssp             HTSCTTCCEEECTTSCGGGSC---HHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCC
T ss_pred             hcCCccccEeeecCCCCchhh---HHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCc
Confidence            5555 9999999998765411   01111234445 478888876554322233445566666 4699999999998864


Q ss_pred             hhhhhccccchHHHhhhCCCCCCCCEEEeccccCCCC-------CchHHHhccCCcEEeecCCCCCCC
Q 038150          365 EEGERRKNEDNQLLLEALRPPLNLKELEIEYYRGNTV-------FPSWMTSLTNLKSLDLSSCENCEQ  425 (488)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-------lp~~~~~l~~L~~L~l~~~~~~~~  425 (488)
                      ..        ...+...+..+++|+.|++++|.+...       ++..+..+++|+.|++++|.....
T Consensus       240 ~~--------~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~  299 (362)
T 3goz_A          240 PS--------LENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS  299 (362)
T ss_dssp             CC--------HHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred             HH--------HHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence            32        245566778889999999999985441       122334677899999999986554

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.58  E-value=4e-16  Score=161.56  Aligned_cols=110  Identities=15%  Similarity=-0.016  Sum_probs=65.5

Q ss_pred             ccccCcceecccccchhh---hhhHHHHHhcCCccceeecCCCcccccccCCcccccccCccCchhhhhhccCcEeecCC
Q 038150          176 LRVKRMRTLLINDHSLLN---AAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVLPETLCELYNLEKLDISD  252 (488)
Q Consensus       176 ~~~~~Lr~L~l~~~~~~~---~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~lp~~i~~L~~L~~L~l~~  252 (488)
                      ..+++|++|++.++. +.   ...++..+.++++|++|++++|.      ..         .+|..+..+++|++|+++.
T Consensus       189 ~~~~~L~~L~L~~n~-~~~~~~~~l~~~~~~~~~L~~L~L~~~~------~~---------~l~~~~~~~~~L~~L~l~~  252 (592)
T 3ogk_B          189 QHNTSLEVLNFYMTE-FAKISPKDLETIARNCRSLVSVKVGDFE------IL---------ELVGFFKAAANLEEFCGGS  252 (592)
T ss_dssp             HHCCCCCEEECTTCC-CSSCCHHHHHHHHHHCTTCCEEECSSCB------GG---------GGHHHHHHCTTCCEEEECB
T ss_pred             hcCCCccEEEeeccC-CCccCHHHHHHHHhhCCCCcEEeccCcc------HH---------HHHHHHhhhhHHHhhcccc
Confidence            345556666665542 21   11455556667777777777766      33         5667778888888888875


Q ss_pred             CCCc---ccCchhhccccccceeeccCCCCCCCCCCCCCCcccccccCceeec
Q 038150          253 CFNL---KELPEGIGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFHVS  302 (488)
Q Consensus       253 ~~~~---~~lp~~l~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~  302 (488)
                      +...   ...+..+..+++|++|.+.++. ...+|..+..+++|++|++.+|.
T Consensus       253 ~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~l~~~~~~~~~L~~L~Ls~~~  304 (592)
T 3ogk_B          253 LNEDIGMPEKYMNLVFPRKLCRLGLSYMG-PNEMPILFPFAAQIRKLDLLYAL  304 (592)
T ss_dssp             CCCCTTCTTSSSCCCCCTTCCEEEETTCC-TTTGGGGGGGGGGCCEEEETTCC
T ss_pred             cccccchHHHHHHhhccccccccCccccc-hhHHHHHHhhcCCCcEEecCCCc
Confidence            3322   2233455666667776666643 34455556666677777666655

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.57  E-value=9.8e-15  Score=136.68  Aligned_cols=176  Identities=26%  Similarity=0.265  Sum_probs=141.9

Q ss_pred             hhhhhccCcEeecCCCCCcccCchhhccccccceeeccCCCCCCCCCCCCCCcccccccCceeecCCCCCCCCcccCccc
Q 038150          238 TLCELYNLEKLDISDCFNLKELPEGIGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGRKACRLES  317 (488)
Q Consensus       238 ~i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~  317 (488)
                      ....+++|++|++++|. +..+| .+..+++|++|++++|.+ ..++. ++++++|++|++.+|.+.+         +..
T Consensus        41 ~~~~l~~L~~L~l~~~~-i~~~~-~~~~l~~L~~L~L~~n~l-~~~~~-l~~l~~L~~L~l~~n~l~~---------~~~  107 (291)
T 1h6t_A           41 TQNELNSIDQIIANNSD-IKSVQ-GIQYLPNVTKLFLNGNKL-TDIKP-LANLKNLGWLFLDENKVKD---------LSS  107 (291)
T ss_dssp             CHHHHHTCCEEECTTSC-CCCCT-TGGGCTTCCEEECCSSCC-CCCGG-GTTCTTCCEEECCSSCCCC---------GGG
T ss_pred             chhhcCcccEEEccCCC-cccCh-hHhcCCCCCEEEccCCcc-CCCcc-cccCCCCCEEECCCCcCCC---------Chh
Confidence            35689999999999975 67775 589999999999999985 44555 8999999999999987664         344


Q ss_pred             ccCCCcccccccccccCCCChhhhhHhhcccCCCCCceeecccCchhhhhhhccccchHHHhhhCCCCCCCCEEEecccc
Q 038150          318 LKNLEHLQVCGISRLGDVSDVGEAKRLELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKELEIEYYR  397 (488)
Q Consensus       318 l~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  397 (488)
                      +..+++|+.|+++...- ...     ..+..+++|+.|++++|.+..             + ..+..+++|+.|++++|.
T Consensus       108 l~~l~~L~~L~L~~n~i-~~~-----~~l~~l~~L~~L~l~~n~l~~-------------~-~~l~~l~~L~~L~L~~N~  167 (291)
T 1h6t_A          108 LKDLKKLKSLSLEHNGI-SDI-----NGLVHLPQLESLYLGNNKITD-------------I-TVLSRLTKLDTLSLEDNQ  167 (291)
T ss_dssp             GTTCTTCCEEECTTSCC-CCC-----GGGGGCTTCCEEECCSSCCCC-------------C-GGGGGCTTCSEEECCSSC
T ss_pred             hccCCCCCEEECCCCcC-CCC-----hhhcCCCCCCEEEccCCcCCc-------------c-hhhccCCCCCEEEccCCc
Confidence            77888888888865532 221     357789999999999998742             1 467788999999999999


Q ss_pred             CCCCCchHHHhccCCcEEeecCCCCCCCCCCCCCCCCcCeeeecccccceeeC
Q 038150          398 GNTVFPSWMTSLTNLKSLDLSSCENCEQLPPLGKLQSLENLHIWRMESVKRVG  450 (488)
Q Consensus       398 ~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~  450 (488)
                      +.. ++. +..+++|++|++++|.. ..++.+..+++|+.|++++|+ +...|
T Consensus       168 l~~-~~~-l~~l~~L~~L~L~~N~i-~~l~~l~~l~~L~~L~l~~n~-i~~~~  216 (291)
T 1h6t_A          168 ISD-IVP-LAGLTKLQNLYLSKNHI-SDLRALAGLKNLDVLELFSQE-CLNKP  216 (291)
T ss_dssp             CCC-CGG-GTTCTTCCEEECCSSCC-CBCGGGTTCTTCSEEEEEEEE-EECCC
T ss_pred             ccc-chh-hcCCCccCEEECCCCcC-CCChhhccCCCCCEEECcCCc-ccCCc
Confidence            987 655 88999999999999974 557778899999999999987 44444

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.57  E-value=1.6e-14  Score=132.36  Aligned_cols=174  Identities=18%  Similarity=0.135  Sum_probs=127.9

Q ss_pred             ccCcEeecCCCCCcccCchhhccccccceeeccCCCCCCCCCCCCCCcccccccCceeecCCCCCCCCcccCcccccCCC
Q 038150          243 YNLEKLDISDCFNLKELPEGIGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGRKACRLESLKNLE  322 (488)
Q Consensus       243 ~~L~~L~l~~~~~~~~lp~~l~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~  322 (488)
                      ...++++++++. +..+|..+.  ++|++|++++|.+....+..++++++|++|++.+|.+.+.       ....+..++
T Consensus        14 ~~~~~l~~~~~~-l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-------~~~~~~~l~   83 (251)
T 3m19_A           14 EGKKEVDCQGKS-LDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTL-------SAGVFDDLT   83 (251)
T ss_dssp             GGGTEEECTTCC-CSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCC-------CTTTTTTCT
T ss_pred             CCCeEEecCCCC-ccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCcc-------CHhHhccCC
Confidence            457889999854 788887776  6899999999996666666799999999999999877651       123355667


Q ss_pred             cccccccccc--cCCCChhhhhHhhcccCCCCCceeecccCchhhhhhhccccchHHHhhhCCCCCCCCEEEeccccCCC
Q 038150          323 HLQVCGISRL--GDVSDVGEAKRLELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKELEIEYYRGNT  400 (488)
Q Consensus       323 ~L~~L~~~~~--~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  400 (488)
                      +|+.|.++..  ..++      ...+..+++|+.|++++|.+...            .+..+..+++|+.|++++|.+..
T Consensus        84 ~L~~L~L~~n~l~~~~------~~~~~~l~~L~~L~L~~N~l~~~------------~~~~~~~l~~L~~L~Ls~N~l~~  145 (251)
T 3m19_A           84 ELGTLGLANNQLASLP------LGVFDHLTQLDKLYLGGNQLKSL------------PSGVFDRLTKLKELRLNTNQLQS  145 (251)
T ss_dssp             TCCEEECTTSCCCCCC------TTTTTTCTTCCEEECCSSCCCCC------------CTTTTTTCTTCCEEECCSSCCCC
T ss_pred             cCCEEECCCCcccccC------hhHhcccCCCCEEEcCCCcCCCc------------ChhHhccCCcccEEECcCCcCCc
Confidence            7777766443  3222      24456788888888888887422            12346778888888888888877


Q ss_pred             CCchHHHhccCCcEEeecCCCCCCCCCC-CCCCCCcCeeeecccc
Q 038150          401 VFPSWMTSLTNLKSLDLSSCENCEQLPP-LGKLQSLENLHIWRME  444 (488)
Q Consensus       401 ~lp~~~~~l~~L~~L~l~~~~~~~~~~~-l~~l~~L~~L~l~~~~  444 (488)
                      ..+..++.+++|++|++++|......+. +..+++|+.|++++|+
T Consensus       146 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~  190 (251)
T 3m19_A          146 IPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQ  190 (251)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred             cCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCc
Confidence            3334677888888888888876654443 7788888888888876

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.56  E-value=1e-15  Score=158.57  Aligned_cols=61  Identities=13%  Similarity=0.086  Sum_probs=32.9

Q ss_pred             ccceeeEEEEecCCc-Cccccc-cccCcceecccccchhhhhhHHHHHhcCCccceeecCCCc
Q 038150          156 EKVRHLMLIFSKAAS-LPISTL-RVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSY  216 (488)
Q Consensus       156 ~~vr~l~l~~~~~~~-~~~~~~-~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~  216 (488)
                      ..++++++..+.... .+..+. .+++|++|++.+|..++...++..+.++++|++|++++|.
T Consensus       105 ~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~  167 (594)
T 2p1m_B          105 TWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESD  167 (594)
T ss_dssp             TTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCE
T ss_pred             CCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCc
Confidence            355666666554321 112222 4566677766666444432355555566667777766665

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.55  E-value=8.2e-15  Score=135.01  Aligned_cols=148  Identities=19%  Similarity=0.176  Sum_probs=82.1

Q ss_pred             hhhhhccCcEeecCCCCCcccCchhhccccccceeeccCCCCCCCCCCCCCCcccccccCceeecCCCCCCCCcccCccc
Q 038150          238 TLCELYNLEKLDISDCFNLKELPEGIGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGRKACRLES  317 (488)
Q Consensus       238 ~i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~  317 (488)
                      .+..+++|++|++++|. +..+| .+..+++|++|++++|.+ ..+|. ++++++|++|++.+|.+.+     .+.    
T Consensus        36 ~~~~l~~L~~L~l~~n~-i~~l~-~l~~l~~L~~L~L~~N~i-~~~~~-l~~l~~L~~L~L~~N~l~~-----l~~----  102 (263)
T 1xeu_A           36 SQKELSGVQNFNGDNSN-IQSLA-GMQFFTNLKELHLSHNQI-SDLSP-LKDLTKLEELSVNRNRLKN-----LNG----  102 (263)
T ss_dssp             CHHHHTTCSEEECTTSC-CCCCT-TGGGCTTCCEEECCSSCC-CCCGG-GTTCSSCCEEECCSSCCSC-----CTT----
T ss_pred             chhhcCcCcEEECcCCC-cccch-HHhhCCCCCEEECCCCcc-CCChh-hccCCCCCEEECCCCccCC-----cCc----
Confidence            45566666666666653 55555 566666666666666653 33333 6666666666666554332     000    


Q ss_pred             ccCCCcccccccccccCCCChhhhhHhhcccCCCCCceeecccCchhhhhhhccccchHHHhhhCCCCCCCCEEEecccc
Q 038150          318 LKNLEHLQVCGISRLGDVSDVGEAKRLELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKELEIEYYR  397 (488)
Q Consensus       318 l~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  397 (488)
                                                  +.. ++|+.|++++|.+...              +.+..+++|+.|++++|.
T Consensus       103 ----------------------------~~~-~~L~~L~L~~N~l~~~--------------~~l~~l~~L~~L~Ls~N~  139 (263)
T 1xeu_A          103 ----------------------------IPS-ACLSRLFLDNNELRDT--------------DSLIHLKNLEILSIRNNK  139 (263)
T ss_dssp             ----------------------------CCC-SSCCEEECCSSCCSBS--------------GGGTTCTTCCEEECTTSC
T ss_pred             ----------------------------ccc-CcccEEEccCCccCCC--------------hhhcCcccccEEECCCCc
Confidence                                        001 4455555555554311              235556666666666666


Q ss_pred             CCCCCchHHHhccCCcEEeecCCCCCCCCCCCCCCCCcCeeeecccc
Q 038150          398 GNTVFPSWMTSLTNLKSLDLSSCENCEQLPPLGKLQSLENLHIWRME  444 (488)
Q Consensus       398 ~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~  444 (488)
                      +.. +| .++.+++|+.|++++|.... ++.+..+++|+.|++++|+
T Consensus       140 i~~-~~-~l~~l~~L~~L~L~~N~i~~-~~~l~~l~~L~~L~l~~N~  183 (263)
T 1xeu_A          140 LKS-IV-MLGFLSKLEVLDLHGNEITN-TGGLTRLKKVNWIDLTGQK  183 (263)
T ss_dssp             CCB-CG-GGGGCTTCCEEECTTSCCCB-CTTSTTCCCCCEEEEEEEE
T ss_pred             CCC-Ch-HHccCCCCCEEECCCCcCcc-hHHhccCCCCCEEeCCCCc
Confidence            655 44 45566666666666665433 3446666666666666654

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.54  E-value=6.7e-15  Score=151.11  Aligned_cols=176  Identities=24%  Similarity=0.244  Sum_probs=142.8

Q ss_pred             hhhhhccCcEeecCCCCCcccCchhhccccccceeeccCCCCCCCCCCCCCCcccccccCceeecCCCCCCCCcccCccc
Q 038150          238 TLCELYNLEKLDISDCFNLKELPEGIGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGRKACRLES  317 (488)
Q Consensus       238 ~i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~  317 (488)
                      .+..|.+|+.|++++|. +..+| .+..+++|++|++++|.+. .++. +.++++|+.|++.+|.+.+         +..
T Consensus        38 ~~~~L~~L~~L~l~~n~-i~~l~-~l~~l~~L~~L~Ls~N~l~-~~~~-l~~l~~L~~L~Ls~N~l~~---------l~~  104 (605)
T 1m9s_A           38 TQNELNSIDQIIANNSD-IKSVQ-GIQYLPNVTKLFLNGNKLT-DIKP-LTNLKNLGWLFLDENKIKD---------LSS  104 (605)
T ss_dssp             CHHHHTTCCCCBCTTCC-CCCCT-TGGGCTTCCEEECTTSCCC-CCGG-GGGCTTCCEEECCSSCCCC---------CTT
T ss_pred             chhcCCCCCEEECcCCC-CCCCh-HHccCCCCCEEEeeCCCCC-CChh-hccCCCCCEEECcCCCCCC---------Chh
Confidence            36789999999999976 77776 6999999999999999854 4544 8999999999999997765         235


Q ss_pred             ccCCCcccccccccccCCCChhhhhHhhcccCCCCCceeecccCchhhhhhhccccchHHHhhhCCCCCCCCEEEecccc
Q 038150          318 LKNLEHLQVCGISRLGDVSDVGEAKRLELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKELEIEYYR  397 (488)
Q Consensus       318 l~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  397 (488)
                      +..+++|+.|.++...-.. .     ..+..+++|+.|++++|.+..             + ..+..+++|+.|+|++|.
T Consensus       105 l~~l~~L~~L~Ls~N~l~~-l-----~~l~~l~~L~~L~Ls~N~l~~-------------l-~~l~~l~~L~~L~Ls~N~  164 (605)
T 1m9s_A          105 LKDLKKLKSLSLEHNGISD-I-----NGLVHLPQLESLYLGNNKITD-------------I-TVLSRLTKLDTLSLEDNQ  164 (605)
T ss_dssp             STTCTTCCEEECTTSCCCC-C-----GGGGGCTTCSEEECCSSCCCC-------------C-GGGGSCTTCSEEECCSSC
T ss_pred             hccCCCCCEEEecCCCCCC-C-----ccccCCCccCEEECCCCccCC-------------c-hhhcccCCCCEEECcCCc
Confidence            7778888888886544222 1     357889999999999998752             1 567889999999999999


Q ss_pred             CCCCCchHHHhccCCcEEeecCCCCCCCCCCCCCCCCcCeeeecccccceeeC
Q 038150          398 GNTVFPSWMTSLTNLKSLDLSSCENCEQLPPLGKLQSLENLHIWRMESVKRVG  450 (488)
Q Consensus       398 ~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~  450 (488)
                      +.. ++. +..+++|+.|+|++|.+ ..++.+..+++|+.|+|++|+ +...|
T Consensus       165 l~~-~~~-l~~l~~L~~L~Ls~N~i-~~l~~l~~l~~L~~L~L~~N~-l~~~p  213 (605)
T 1m9s_A          165 ISD-IVP-LAGLTKLQNLYLSKNHI-SDLRALAGLKNLDVLELFSQE-CLNKP  213 (605)
T ss_dssp             CCC-CGG-GTTCTTCCEEECCSSCC-CBCGGGTTCTTCSEEECCSEE-EECCC
T ss_pred             CCC-chh-hccCCCCCEEECcCCCC-CCChHHccCCCCCEEEccCCc-CcCCc
Confidence            987 555 88999999999999975 456778999999999999987 44444

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.54  E-value=6.6e-15  Score=141.82  Aligned_cols=101  Identities=20%  Similarity=0.239  Sum_probs=48.5

Q ss_pred             eEEEEecCCcCccccccccCcceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccCccCchhhh
Q 038150          161 LMLIFSKAASLPISTLRVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVLPETLC  240 (488)
Q Consensus       161 l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~lp~~i~  240 (488)
                      +..+......+|..+  .+++++|++++| .+.. ..+..|.++++|++|+|++|.+     .+.+|.        ..+.
T Consensus        14 v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N-~i~~-i~~~~f~~l~~L~~L~Ls~N~i-----~~~i~~--------~~f~   76 (350)
T 4ay9_X           14 FLCQESKVTEIPSDL--PRNAIELRFVLT-KLRV-IQKGAFSGFGDLEKIEISQNDV-----LEVIEA--------DVFS   76 (350)
T ss_dssp             EEEESTTCCSCCTTC--CTTCSEEEEESC-CCSE-ECTTSSTTCTTCCEEEEECCTT-----CCEECT--------TSBC
T ss_pred             EEecCCCCCccCcCc--CCCCCEEEccCC-cCCC-cCHHHHcCCCCCCEEECcCCCC-----CCccCh--------hHhh
Confidence            333333345555443  245666666665 4443 3333456666666666666653     232211        1234


Q ss_pred             hhccCcEeecCCCCCcccC-chhhccccccceeeccCCC
Q 038150          241 ELYNLEKLDISDCFNLKEL-PEGIGKLINVKHLLNRGTN  278 (488)
Q Consensus       241 ~L~~L~~L~l~~~~~~~~l-p~~l~~L~~L~~L~l~~~~  278 (488)
                      ++++|+.+...+++.+..+ |..+..+++|++|++++|.
T Consensus        77 ~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~  115 (350)
T 4ay9_X           77 NLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTG  115 (350)
T ss_dssp             SCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEEC
T ss_pred             cchhhhhhhcccCCcccccCchhhhhccccccccccccc
Confidence            4555544333222234444 3345566666666666665

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.53  E-value=1.1e-14  Score=128.22  Aligned_cols=151  Identities=16%  Similarity=0.205  Sum_probs=93.4

Q ss_pred             hhhccCcEeecCCCCCcccCchhhccccccceeeccCCCCCCCCCCCCCCcccccccCceeecCCCCCCCCcccCccccc
Q 038150          240 CELYNLEKLDISDCFNLKELPEGIGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGRKACRLESLK  319 (488)
Q Consensus       240 ~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~  319 (488)
                      +.+++|++|++++|. +..+| .+..+++|++|++++|. ...+ ..+..+++|++|++.+|.+.+.             
T Consensus        41 ~~l~~L~~L~l~~n~-i~~l~-~l~~l~~L~~L~l~~n~-~~~~-~~l~~l~~L~~L~l~~n~l~~~-------------  103 (197)
T 4ezg_A           41 AQMNSLTYITLANIN-VTDLT-GIEYAHNIKDLTINNIH-ATNY-NPISGLSNLERLRIMGKDVTSD-------------  103 (197)
T ss_dssp             HHHHTCCEEEEESSC-CSCCT-TGGGCTTCSEEEEESCC-CSCC-GGGTTCTTCCEEEEECTTCBGG-------------
T ss_pred             hhcCCccEEeccCCC-ccChH-HHhcCCCCCEEEccCCC-CCcc-hhhhcCCCCCEEEeECCccCcc-------------
Confidence            456666666666643 44555 56666666666666663 2222 3466666666666665543210             


Q ss_pred             CCCcccccccccccCCCChhhhhHhhcccCCCCCceeecccCchhhhhhhccccchHHHhhhCCCCCCCCEEEecccc-C
Q 038150          320 NLEHLQVCGISRLGDVSDVGEAKRLELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKELEIEYYR-G  398 (488)
Q Consensus       320 ~L~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~  398 (488)
                                            .+..+..+++|+.|++++|.+.            ...+..+..+++|+.|++++|. +
T Consensus       104 ----------------------~~~~l~~l~~L~~L~Ls~n~i~------------~~~~~~l~~l~~L~~L~L~~n~~i  149 (197)
T 4ezg_A          104 ----------------------KIPNLSGLTSLTLLDISHSAHD------------DSILTKINTLPKVNSIDLSYNGAI  149 (197)
T ss_dssp             ----------------------GSCCCTTCTTCCEEECCSSBCB------------GGGHHHHTTCSSCCEEECCSCTBC
T ss_pred             ----------------------cChhhcCCCCCCEEEecCCccC------------cHhHHHHhhCCCCCEEEccCCCCc
Confidence                                  0012334556666666666654            2234566677788888888876 4


Q ss_pred             CCCCchHHHhccCCcEEeecCCCCCCCCCCCCCCCCcCeeeecccc
Q 038150          399 NTVFPSWMTSLTNLKSLDLSSCENCEQLPPLGKLQSLENLHIWRME  444 (488)
Q Consensus       399 ~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~  444 (488)
                      .. +| .+..+++|++|++++|.. ..++.+..+++|++|++++++
T Consensus       150 ~~-~~-~l~~l~~L~~L~l~~n~i-~~~~~l~~l~~L~~L~l~~N~  192 (197)
T 4ezg_A          150 TD-IM-PLKTLPELKSLNIQFDGV-HDYRGIEDFPKLNQLYAFSQT  192 (197)
T ss_dssp             CC-CG-GGGGCSSCCEEECTTBCC-CCCTTGGGCSSCCEEEECBC-
T ss_pred             cc-cH-hhcCCCCCCEEECCCCCC-cChHHhccCCCCCEEEeeCcc
Confidence            44 65 577788888888888874 345567778888888887775

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.52  E-value=2.6e-14  Score=125.70  Aligned_cols=153  Identities=17%  Similarity=0.168  Sum_probs=124.6

Q ss_pred             HhcCCccceeecCCCcccccccCCcccccccCccCchhhhhhccCcEeecCCCCCcccCchhhccccccceeeccCCCCC
Q 038150          201 FRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVLPETLCELYNLEKLDISDCFNLKELPEGIGKLINVKHLLNRGTNSL  280 (488)
Q Consensus       201 ~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~lp~~i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~L~l~~~~~~  280 (488)
                      ...+++|++|++++|.      +.         .+| .+..+++|++|++++|. +..++ .+..+++|++|++++|.+.
T Consensus        40 ~~~l~~L~~L~l~~n~------i~---------~l~-~l~~l~~L~~L~l~~n~-~~~~~-~l~~l~~L~~L~l~~n~l~  101 (197)
T 4ezg_A           40 EAQMNSLTYITLANIN------VT---------DLT-GIEYAHNIKDLTINNIH-ATNYN-PISGLSNLERLRIMGKDVT  101 (197)
T ss_dssp             HHHHHTCCEEEEESSC------CS---------CCT-TGGGCTTCSEEEEESCC-CSCCG-GGTTCTTCCEEEEECTTCB
T ss_pred             hhhcCCccEEeccCCC------cc---------ChH-HHhcCCCCCEEEccCCC-CCcch-hhhcCCCCCEEEeECCccC
Confidence            4778899999999999      55         455 68899999999999984 55554 8899999999999999876


Q ss_pred             CCCCCCCCCcccccccCceeecCCCCCCCCcccCcccccCCCcccccccccccCCCChhhhhHhhcccCCCCCceeeccc
Q 038150          281 RYMPVGIGRLTGLRTLGEFHVSAGGGVDGRKACRLESLKNLEHLQVCGISRLGDVSDVGEAKRLELDKKKYLSSLTLWFD  360 (488)
Q Consensus       281 ~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~  360 (488)
                      ...|..++++++|++|++.+|.+.+                                   ..+..+..+++|+.|++++|
T Consensus       102 ~~~~~~l~~l~~L~~L~Ls~n~i~~-----------------------------------~~~~~l~~l~~L~~L~L~~n  146 (197)
T 4ezg_A          102 SDKIPNLSGLTSLTLLDISHSAHDD-----------------------------------SILTKINTLPKVNSIDLSYN  146 (197)
T ss_dssp             GGGSCCCTTCTTCCEEECCSSBCBG-----------------------------------GGHHHHTTCSSCCEEECCSC
T ss_pred             cccChhhcCCCCCCEEEecCCccCc-----------------------------------HhHHHHhhCCCCCEEEccCC
Confidence            6678889999999999998875432                                   11345667899999999999


Q ss_pred             C-chhhhhhhccccchHHHhhhCCCCCCCCEEEeccccCCCCCchHHHhccCCcEEeecCCCC
Q 038150          361 K-EEEEEGERRKNEDNQLLLEALRPPLNLKELEIEYYRGNTVFPSWMTSLTNLKSLDLSSCEN  422 (488)
Q Consensus       361 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~  422 (488)
                      . +.             .++ .+..+++|+.|++++|.+.. ++ .+..+++|++|++++|+.
T Consensus       147 ~~i~-------------~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i  193 (197)
T 4ezg_A          147 GAIT-------------DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTI  193 (197)
T ss_dssp             TBCC-------------CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC--
T ss_pred             CCcc-------------ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCccc
Confidence            7 53             223 57788999999999999987 66 688999999999999874

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.52  E-value=1.2e-15  Score=155.58  Aligned_cols=204  Identities=16%  Similarity=0.101  Sum_probs=143.4

Q ss_pred             ccccCcceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccCc----cCchhhhhhccCcEee-c
Q 038150          176 LRVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKL----VLPETLCELYNLEKLD-I  250 (488)
Q Consensus       176 ~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l----~lp~~i~~L~~L~~L~-l  250 (488)
                      ..+++|+.|++++| .+.  .+|..++++++|+.|+++++..     ...+|..+..+    ..|..++.+++|+.|+ +
T Consensus       346 ~~~~~L~~L~Ls~n-~L~--~Lp~~i~~l~~L~~L~l~~n~~-----l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l  417 (567)
T 1dce_A          346 ATDEQLFRCELSVE-KST--VLQSELESCKELQELEPENKWC-----LLTIILLMRALDPLLYEKETLQYFSTLKAVDPM  417 (567)
T ss_dssp             STTTTSSSCCCCHH-HHH--HHHHHHHHHHHHHHHCTTCHHH-----HHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGG
T ss_pred             ccCccceeccCChh-hHH--hhHHHHHHHHHHHHhccccchh-----hhhHHHHHHhcccccCCHHHHHHHHhcccCcch
Confidence            45788999999997 666  5888899999999999977641     11111100000    5677888899999988 5


Q ss_pred             CCCCCcccCch------hhccc--cccceeeccCCCCCCCCCCCCCCcccccccCceeecCCCCCCCCcccCcccccCCC
Q 038150          251 SDCFNLKELPE------GIGKL--INVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGRKACRLESLKNLE  322 (488)
Q Consensus       251 ~~~~~~~~lp~------~l~~L--~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~  322 (488)
                      +.+ .+..++.      .+..+  ..|++|++++|. +..+|. ++++++|++|++++|.+..                 
T Consensus       418 ~~n-~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~-l~~lp~-~~~l~~L~~L~Ls~N~l~~-----------------  477 (567)
T 1dce_A          418 RAA-YLDDLRSKFLLENSVLKMEYADVRVLHLAHKD-LTVLCH-LEQLLLVTHLDLSHNRLRA-----------------  477 (567)
T ss_dssp             GHH-HHHHHHHHHHHHHHHHHHHHTTCSEEECTTSC-CSSCCC-GGGGTTCCEEECCSSCCCC-----------------
T ss_pred             hhc-ccchhhhhhhhcccccccCccCceEEEecCCC-CCCCcC-ccccccCcEeecCcccccc-----------------
Confidence            543 2333321      12221  358889999887 445776 8888888888887775432                 


Q ss_pred             cccccccccccCCCChhhhhHhhcccCCCCCceeecccCchhhhhhhccccchHHHhhhCCCCCCCCEEEeccccCCCCC
Q 038150          323 HLQVCGISRLGDVSDVGEAKRLELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKELEIEYYRGNTVF  402 (488)
Q Consensus       323 ~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l  402 (488)
                                  +       +..+..+++|+.|++++|.++             .+| .++.+++|+.|+|++|.+....
T Consensus       478 ------------l-------p~~~~~l~~L~~L~Ls~N~l~-------------~lp-~l~~l~~L~~L~Ls~N~l~~~~  524 (567)
T 1dce_A          478 ------------L-------PPALAALRCLEVLQASDNALE-------------NVD-GVANLPRLQELLLCNNRLQQSA  524 (567)
T ss_dssp             ------------C-------CGGGGGCTTCCEEECCSSCCC-------------CCG-GGTTCSSCCEEECCSSCCCSSS
T ss_pred             ------------c-------chhhhcCCCCCEEECCCCCCC-------------CCc-ccCCCCCCcEEECCCCCCCCCC
Confidence                        1       134566788888999988874             245 7888999999999999988833


Q ss_pred             -chHHHhccCCcEEeecCCCCCCCCCCCC----CCCCcCeeee
Q 038150          403 -PSWMTSLTNLKSLDLSSCENCEQLPPLG----KLQSLENLHI  440 (488)
Q Consensus       403 -p~~~~~l~~L~~L~l~~~~~~~~~~~l~----~l~~L~~L~l  440 (488)
                       |..++.+++|+.|++++|.....+|...    .+|+|+.|++
T Consensus       525 ~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          525 AIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             TTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             CcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence             8889999999999999998665554433    3788888753

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.51  E-value=3.4e-14  Score=144.29  Aligned_cols=179  Identities=13%  Similarity=0.091  Sum_probs=126.4

Q ss_pred             CccceeecCCCcccccccCCcccccccCccCchhhhhhccCcEeecCCCCCcccCchhhccccccceeeccCCCCCCCCC
Q 038150          205 TSLRALDFGGSYHSTRLLTPEVPRNIEKLVLPETLCELYNLEKLDISDCFNLKELPEGIGKLINVKHLLNRGTNSLRYMP  284 (488)
Q Consensus       205 ~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~lp~~i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~L~l~~~~~~~~lp  284 (488)
                      .+|++|++++|.      +..+|         ..+  +++|++|++++|. +..+|   ..+++|++|++++|.+. .+|
T Consensus        59 ~~L~~L~Ls~n~------L~~lp---------~~l--~~~L~~L~Ls~N~-l~~ip---~~l~~L~~L~Ls~N~l~-~ip  116 (571)
T 3cvr_A           59 NQFSELQLNRLN------LSSLP---------DNL--PPQITVLEITQNA-LISLP---ELPASLEYLDACDNRLS-TLP  116 (571)
T ss_dssp             TTCSEEECCSSC------CSCCC---------SCC--CTTCSEEECCSSC-CSCCC---CCCTTCCEEECCSSCCS-CCC
T ss_pred             CCccEEEeCCCC------CCccC---------HhH--cCCCCEEECcCCC-Ccccc---cccCCCCEEEccCCCCC-Ccc
Confidence            478888888888      44343         333  2678888888865 56787   55788888888888744 477


Q ss_pred             CCCCCcccccccCceeecCCCCCCCCcccCcccccCCCcccccccccc--cCCCChhhhhHhhcccCCCCCceeecccCc
Q 038150          285 VGIGRLTGLRTLGEFHVSAGGGVDGRKACRLESLKNLEHLQVCGISRL--GDVSDVGEAKRLELDKKKYLSSLTLWFDKE  362 (488)
Q Consensus       285 ~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~--~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  362 (488)
                      . +.+  +|++|++++|.+.+     .+.      .+++|+.|.++..  ..++.          .+++|+.|++++|.+
T Consensus       117 ~-l~~--~L~~L~Ls~N~l~~-----lp~------~l~~L~~L~Ls~N~l~~lp~----------~l~~L~~L~Ls~N~L  172 (571)
T 3cvr_A          117 E-LPA--SLKHLDVDNNQLTM-----LPE------LPALLEYINADNNQLTMLPE----------LPTSLEVLSVRNNQL  172 (571)
T ss_dssp             C-CCT--TCCEEECCSSCCSC-----CCC------CCTTCCEEECCSSCCSCCCC----------CCTTCCEEECCSSCC
T ss_pred             h-hhc--CCCEEECCCCcCCC-----CCC------cCccccEEeCCCCccCcCCC----------cCCCcCEEECCCCCC
Confidence            7 655  88888888887665     222      4566676666433  33331          467899999999987


Q ss_pred             hhhhhhhccccchHHHhhhCCCCCCCCEEEeccccCCCCCchHHHhccCC-------cEEeecCCCCCCCCCC-CCCCCC
Q 038150          363 EEEEGERRKNEDNQLLLEALRPPLNLKELEIEYYRGNTVFPSWMTSLTNL-------KSLDLSSCENCEQLPP-LGKLQS  434 (488)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L-------~~L~l~~~~~~~~~~~-l~~l~~  434 (488)
                      .+             +|. +.  ++|+.|+|++|.+.. +|. +..  +|       +.|++++|.+. .+|. +..+++
T Consensus       173 ~~-------------lp~-l~--~~L~~L~Ls~N~L~~-lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~  231 (571)
T 3cvr_A          173 TF-------------LPE-LP--ESLEALDVSTNLLES-LPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDP  231 (571)
T ss_dssp             SC-------------CCC-CC--TTCCEEECCSSCCSS-CCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCT
T ss_pred             CC-------------cch-hh--CCCCEEECcCCCCCc-hhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCC
Confidence            42             444 44  799999999998886 877 443  67       99999999855 5776 777999


Q ss_pred             cCeeeecccccceeeC
Q 038150          435 LENLHIWRMESVKRVG  450 (488)
Q Consensus       435 L~~L~l~~~~~l~~~~  450 (488)
                      |+.|++++|+-...+|
T Consensus       232 L~~L~L~~N~l~~~~p  247 (571)
T 3cvr_A          232 TCTIILEDNPLSSRIR  247 (571)
T ss_dssp             TEEEECCSSSCCHHHH
T ss_pred             CCEEEeeCCcCCCcCH
Confidence            9999999988433333

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.50  E-value=7.7e-17  Score=164.50  Aligned_cols=204  Identities=16%  Similarity=0.089  Sum_probs=137.6

Q ss_pred             hcCCccceeecCCCcccccccCCcccccccCccCchhhhhhccCcEeecCCCC-------------CcccCchhhccccc
Q 038150          202 RELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVLPETLCELYNLEKLDISDCF-------------NLKELPEGIGKLIN  268 (488)
Q Consensus       202 ~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~lp~~i~~L~~L~~L~l~~~~-------------~~~~lp~~l~~L~~  268 (488)
                      ..+++|+.|+|++|.      +.         .+|.+|+++++|+.|++++|.             ..+..|..++.+++
T Consensus       346 ~~~~~L~~L~Ls~n~------L~---------~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~  410 (567)
T 1dce_A          346 ATDEQLFRCELSVEK------ST---------VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFST  410 (567)
T ss_dssp             STTTTSSSCCCCHHH------HH---------HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHH
T ss_pred             ccCccceeccCChhh------HH---------hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHh
Confidence            457788888888887      44         678888888888888886653             22233444455555


Q ss_pred             cceee-ccCCCCCCCCCCCCCCcccccccCceeecCCCCCCCCcccCcccccCCCccccccccc--ccCCCChhhhhHhh
Q 038150          269 VKHLL-NRGTNSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGRKACRLESLKNLEHLQVCGISR--LGDVSDVGEAKRLE  345 (488)
Q Consensus       269 L~~L~-l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~--~~~~~~~~~~~~~~  345 (488)
                      |++|+ ++.+.           +.+|+.+.+.++.+.            .+.. ..|+.|.++.  +..++       . 
T Consensus       411 L~~L~~l~~n~-----------~~~L~~l~l~~n~i~------------~l~~-~~L~~L~Ls~n~l~~lp-------~-  458 (567)
T 1dce_A          411 LKAVDPMRAAY-----------LDDLRSKFLLENSVL------------KMEY-ADVRVLHLAHKDLTVLC-------H-  458 (567)
T ss_dssp             HHHHCGGGHHH-----------HHHHHHHHHHHHHHH------------HHHH-TTCSEEECTTSCCSSCC-------C-
T ss_pred             cccCcchhhcc-----------cchhhhhhhhccccc------------ccCc-cCceEEEecCCCCCCCc-------C-
Confidence            55554 22221           122232223222211            1111 1255555533  23322       2 


Q ss_pred             cccCCCCCceeecccCchhhhhhhccccchHHHhhhCCCCCCCCEEEeccccCCCCCchHHHhccCCcEEeecCCCCCCC
Q 038150          346 LDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKELEIEYYRGNTVFPSWMTSLTNLKSLDLSSCENCEQ  425 (488)
Q Consensus       346 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~  425 (488)
                      +..+++|+.|++++|.+             ..+|..++.+++|+.|+|++|.+.. +| .++.+++|+.|++++|.....
T Consensus       459 ~~~l~~L~~L~Ls~N~l-------------~~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~  523 (567)
T 1dce_A          459 LEQLLLVTHLDLSHNRL-------------RALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQS  523 (567)
T ss_dssp             GGGGTTCCEEECCSSCC-------------CCCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSS
T ss_pred             ccccccCcEeecCcccc-------------cccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCC
Confidence            67889999999999987             3567889999999999999999998 88 799999999999999987665


Q ss_pred             C-CC-CCCCCCcCeeeecccccceeeCccccCCCCCCCCCCCCCcccccCcccccccc
Q 038150          426 L-PP-LGKLQSLENLHIWRMESVKRVGDEFLGIESDHHGSSSSSSVIIAFPKLKSLSI  481 (488)
Q Consensus       426 ~-~~-l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l  481 (488)
                      . |. ++.+++|+.|++++|+ +..+|......             ...+|+|+.|++
T Consensus       524 ~~p~~l~~l~~L~~L~L~~N~-l~~~~~~~~~l-------------~~~lp~L~~L~l  567 (567)
T 1dce_A          524 AAIQPLVSCPRLVLLNLQGNS-LCQEEGIQERL-------------AEMLPSVSSILT  567 (567)
T ss_dssp             STTGGGGGCTTCCEEECTTSG-GGGSSSCTTHH-------------HHHCTTCSEEEC
T ss_pred             CCcHHHhcCCCCCEEEecCCc-CCCCccHHHHH-------------HHHCcccCccCC
Confidence            4 65 9999999999999997 55555432111             345899998853

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.50  E-value=6.8e-16  Score=159.90  Aligned_cols=231  Identities=14%  Similarity=0.103  Sum_probs=98.3

Q ss_pred             cccCcceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccCccCchhhhhhccCcEeecCCCCCc
Q 038150          177 RVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVLPETLCELYNLEKLDISDCFNL  256 (488)
Q Consensus       177 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~lp~~i~~L~~L~~L~l~~~~~~  256 (488)
                      .+++|++|++.++ .+....+......+++|++|+|++|..     ++..       .++..+.++++|++|++++|...
T Consensus       103 ~~~~L~~L~L~~~-~~~~~~~~~l~~~~~~L~~L~L~~~~~-----~~~~-------~l~~~~~~~~~L~~L~L~~~~i~  169 (594)
T 2p1m_B          103 SYTWLEEIRLKRM-VVTDDCLELIAKSFKNFKVLVLSSCEG-----FSTD-------GLAAIAATCRNLKELDLRESDVD  169 (594)
T ss_dssp             HCTTCCEEEEESC-BCCHHHHHHHHHHCTTCCEEEEESCEE-----EEHH-------HHHHHHHHCTTCCEEECTTCEEE
T ss_pred             hCCCCCeEEeeCc-EEcHHHHHHHHHhCCCCcEEeCCCcCC-----CCHH-------HHHHHHHhCCCCCEEeCcCCccC
Confidence            4556666666665 344312222222566666666666631     2110       13333445666666666665422


Q ss_pred             cc----CchhhccccccceeeccCCCCCCCCC-C----CCCCcccccccCceeecCCCCCCCCcccCcccccCCCccccc
Q 038150          257 KE----LPEGIGKLINVKHLLNRGTNSLRYMP-V----GIGRLTGLRTLGEFHVSAGGGVDGRKACRLESLKNLEHLQVC  327 (488)
Q Consensus       257 ~~----lp~~l~~L~~L~~L~l~~~~~~~~lp-~----~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~L  327 (488)
                      ..    ++.....+++|++|++++|.  ..+. .    .+.++++|++|++.+|....       .....+.++++|+.|
T Consensus       170 ~~~~~~l~~~~~~~~~L~~L~l~~~~--~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~-------~l~~~~~~~~~L~~L  240 (594)
T 2p1m_B          170 DVSGHWLSHFPDTYTSLVSLNISCLA--SEVSFSALERLVTRCPNLKSLKLNRAVPLE-------KLATLLQRAPQLEEL  240 (594)
T ss_dssp             CCCGGGGGGSCTTCCCCCEEECTTCC--SCCCHHHHHHHHHHCTTCCEEECCTTSCHH-------HHHHHHHHCTTCSEE
T ss_pred             CcchHHHHHHhhcCCcCcEEEecccC--CcCCHHHHHHHHHhCCCCcEEecCCCCcHH-------HHHHHHhcCCcceEc
Confidence            11    22222244566666666553  1111 1    12234566666555441110       111222333444444


Q ss_pred             ccccccC-CC-ChhhhhHhhcccCCCCCce-eecccCchhhhhhhccccchHHHhhhCCCCCCCCEEEeccccCCCC-Cc
Q 038150          328 GISRLGD-VS-DVGEAKRLELDKKKYLSSL-TLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKELEIEYYRGNTV-FP  403 (488)
Q Consensus       328 ~~~~~~~-~~-~~~~~~~~~l~~l~~L~~L-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-lp  403 (488)
                      .+..+.. +. .....+...+.++++|+.| .+.....             ..++..+..+++|+.|++++|.+... ++
T Consensus       241 ~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~-------------~~l~~~~~~~~~L~~L~L~~~~l~~~~l~  307 (594)
T 2p1m_B          241 GTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVP-------------AYLPAVYSVCSRLTTLNLSYATVQSYDLV  307 (594)
T ss_dssp             ECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCG-------------GGGGGGHHHHTTCCEEECTTCCCCHHHHH
T ss_pred             ccccccCccchhhHHHHHHHHhcCCCcccccCCcccch-------------hhHHHHHHhhCCCCEEEccCCCCCHHHHH
Confidence            4332221 00 0111122344555555555 2222211             22233333455666666666653321 12


Q ss_pred             hHHHhccCCcEEeecCCCCCCCCCC-CCCCCCcCeeeecc
Q 038150          404 SWMTSLTNLKSLDLSSCENCEQLPP-LGKLQSLENLHIWR  442 (488)
Q Consensus       404 ~~~~~l~~L~~L~l~~~~~~~~~~~-l~~l~~L~~L~l~~  442 (488)
                      ..+..+++|++|++++|.....++. ...+++|++|++.+
T Consensus       308 ~~~~~~~~L~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~  347 (594)
T 2p1m_B          308 KLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFP  347 (594)
T ss_dssp             HHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEEC
T ss_pred             HHHhcCCCcCEEeCcCccCHHHHHHHHHhCCCCCEEEEec
Confidence            2233566666666666511111222 22356666666643

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.47  E-value=2.7e-14  Score=145.02  Aligned_cols=181  Identities=21%  Similarity=0.134  Sum_probs=111.9

Q ss_pred             cceeeEEEEecCCcCccccccccCcceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccCccCc
Q 038150          157 KVRHLMLIFSKAASLPISTLRVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVLP  236 (488)
Q Consensus       157 ~vr~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~lp  236 (488)
                      .++.+++..+....+|..+  +++|++|++++| .+.  .+|   ..+++|++|++++|.      +.         .+|
T Consensus        60 ~L~~L~Ls~n~L~~lp~~l--~~~L~~L~Ls~N-~l~--~ip---~~l~~L~~L~Ls~N~------l~---------~ip  116 (571)
T 3cvr_A           60 QFSELQLNRLNLSSLPDNL--PPQITVLEITQN-ALI--SLP---ELPASLEYLDACDNR------LS---------TLP  116 (571)
T ss_dssp             TCSEEECCSSCCSCCCSCC--CTTCSEEECCSS-CCS--CCC---CCCTTCCEEECCSSC------CS---------CCC
T ss_pred             CccEEEeCCCCCCccCHhH--cCCCCEEECcCC-CCc--ccc---cccCCCCEEEccCCC------CC---------Ccc
Confidence            6677777777766677654  367777777776 444  244   456777777777777      44         233


Q ss_pred             hhhhhhccCcEeecCCCCCcccCchhhccccccceeeccCCCCCCCCCCCCCCcccccccCceeecCCCCCCCCcccCcc
Q 038150          237 ETLCELYNLEKLDISDCFNLKELPEGIGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGRKACRLE  316 (488)
Q Consensus       237 ~~i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~  316 (488)
                      . ++.  +|++|++++|. +..+|.   .+++|++|++++|.+ ..+|.   .+++|++|++++|.+.+     .+.   
T Consensus       117 ~-l~~--~L~~L~Ls~N~-l~~lp~---~l~~L~~L~Ls~N~l-~~lp~---~l~~L~~L~Ls~N~L~~-----lp~---  177 (571)
T 3cvr_A          117 E-LPA--SLKHLDVDNNQ-LTMLPE---LPALLEYINADNNQL-TMLPE---LPTSLEVLSVRNNQLTF-----LPE---  177 (571)
T ss_dssp             C-CCT--TCCEEECCSSC-CSCCCC---CCTTCCEEECCSSCC-SCCCC---CCTTCCEEECCSSCCSC-----CCC---
T ss_pred             h-hhc--CCCEEECCCCc-CCCCCC---cCccccEEeCCCCcc-CcCCC---cCCCcCEEECCCCCCCC-----cch---
Confidence            3 333  77777777765 555665   567777777777773 34555   45677777777665443     111   


Q ss_pred             cccCCCcccccccccccCCCChhhhhHhhcccCCCCCceeecccCchhhhhhhccccchHHHhhhCCCCCCC-------C
Q 038150          317 SLKNLEHLQVCGISRLGDVSDVGEAKRLELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNL-------K  389 (488)
Q Consensus       317 ~l~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L-------~  389 (488)
                                                   +.  ++|+.|++++|.+.             .+|. +..  +|       +
T Consensus       178 -----------------------------l~--~~L~~L~Ls~N~L~-------------~lp~-~~~--~L~~~~~~L~  210 (571)
T 3cvr_A          178 -----------------------------LP--ESLEALDVSTNLLE-------------SLPA-VPV--RNHHSEETEI  210 (571)
T ss_dssp             -----------------------------CC--TTCCEEECCSSCCS-------------SCCC-CC----------CCE
T ss_pred             -----------------------------hh--CCCCEEECcCCCCC-------------chhh-HHH--hhhcccccce
Confidence                                         11  45666666666653             2222 222  44       7


Q ss_pred             EEEeccccCCCCCchHHHhccCCcEEeecCCCCCCCCC
Q 038150          390 ELEIEYYRGNTVFPSWMTSLTNLKSLDLSSCENCEQLP  427 (488)
Q Consensus       390 ~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~  427 (488)
                      .|++++|.+.. +|.++..+++|+.|+|++|...+.+|
T Consensus       211 ~L~Ls~N~l~~-lp~~l~~l~~L~~L~L~~N~l~~~~p  247 (571)
T 3cvr_A          211 FFRCRENRITH-IPENILSLDPTCTIILEDNPLSSRIR  247 (571)
T ss_dssp             EEECCSSCCCC-CCGGGGGSCTTEEEECCSSSCCHHHH
T ss_pred             EEecCCCccee-cCHHHhcCCCCCEEEeeCCcCCCcCH
Confidence            77777777776 77777777777777777777655444

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.46  E-value=1.1e-13  Score=133.35  Aligned_cols=242  Identities=16%  Similarity=0.122  Sum_probs=162.9

Q ss_pred             ccccCcceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccCccCch-hhhhhccCcEeecCCCC
Q 038150          176 LRVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVLPE-TLCELYNLEKLDISDCF  254 (488)
Q Consensus       176 ~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~lp~-~i~~L~~L~~L~l~~~~  254 (488)
                      +.|.. ++++.+++ .++  .+|..+  .+++++|+|++|.      +.         .+|. .+.++++|++|+|++|.
T Consensus         7 C~C~~-~~v~C~~~-~Lt--~iP~~l--~~~l~~L~Ls~N~------i~---------~i~~~~f~~l~~L~~L~Ls~N~   65 (350)
T 4ay9_X            7 CHCSN-RVFLCQES-KVT--EIPSDL--PRNAIELRFVLTK------LR---------VIQKGAFSGFGDLEKIEISQND   65 (350)
T ss_dssp             SEEET-TEEEEEST-TCC--SCCTTC--CTTCSEEEEESCC------CS---------EECTTSSTTCTTCCEEEEECCT
T ss_pred             cEeeC-CEEEecCC-CCC--ccCcCc--CCCCCEEEccCCc------CC---------CcCHHHHcCCCCCCEEECcCCC
Confidence            34433 56777665 566  466533  4789999999999      66         4554 47899999999999987


Q ss_pred             CcccCch-hhccccccceeec-cCCCCCCCC-CCCCCCcccccccCceeecCCCCCCCCcccCcccccCCCccccccccc
Q 038150          255 NLKELPE-GIGKLINVKHLLN-RGTNSLRYM-PVGIGRLTGLRTLGEFHVSAGGGVDGRKACRLESLKNLEHLQVCGISR  331 (488)
Q Consensus       255 ~~~~lp~-~l~~L~~L~~L~l-~~~~~~~~l-p~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~  331 (488)
                      ..+.+|. .+.++++|+++.. ..|. +..+ |..++++++|++|++.+|.+...     +. .. .....++..+.+..
T Consensus        66 i~~~i~~~~f~~L~~l~~~l~~~~N~-l~~l~~~~f~~l~~L~~L~l~~n~l~~~-----~~-~~-~~~~~~l~~l~l~~  137 (350)
T 4ay9_X           66 VLEVIEADVFSNLPKLHEIRIEKANN-LLYINPEAFQNLPNLQYLLISNTGIKHL-----PD-VH-KIHSLQKVLLDIQD  137 (350)
T ss_dssp             TCCEECTTSBCSCTTCCEEEEEEETT-CCEECTTSBCCCTTCCEEEEEEECCSSC-----CC-CT-TCCBSSCEEEEEES
T ss_pred             CCCccChhHhhcchhhhhhhcccCCc-ccccCchhhhhccccccccccccccccC-----Cc-hh-hcccchhhhhhhcc
Confidence            6666765 4688988887544 4555 4445 56689999999999999987651     11 11 11222333444432


Q ss_pred             ccCCCChhhhhHhhcccC-CCCCceeecccCchhhhhhhccccchHHHhhhCCCCCCCCEEEecc-ccCCCCCch-HHHh
Q 038150          332 LGDVSDVGEAKRLELDKK-KYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKELEIEY-YRGNTVFPS-WMTS  408 (488)
Q Consensus       332 ~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~lp~-~~~~  408 (488)
                      ...+....   ...+..+ ..++.|++++|.+.             .++.......+|+.|.+.+ +.+.. +|. .+..
T Consensus       138 ~~~i~~l~---~~~f~~~~~~l~~L~L~~N~i~-------------~i~~~~f~~~~L~~l~l~~~n~l~~-i~~~~f~~  200 (350)
T 4ay9_X          138 NINIHTIE---RNSFVGLSFESVILWLNKNGIQ-------------EIHNSAFNGTQLDELNLSDNNNLEE-LPNDVFHG  200 (350)
T ss_dssp             CTTCCEEC---TTSSTTSBSSCEEEECCSSCCC-------------EECTTSSTTEEEEEEECTTCTTCCC-CCTTTTTT
T ss_pred             cccccccc---ccchhhcchhhhhhcccccccc-------------CCChhhccccchhHHhhccCCcccC-CCHHHhcc
Confidence            22221100   1223333 46888999999873             4455555667899999986 45555 775 5689


Q ss_pred             ccCCcEEeecCCCCCCCCCCCCCCCCcCeeeecccccceeeCccccCCCCCCCCCCCCCcccccCcccccccccc
Q 038150          409 LTNLKSLDLSSCENCEQLPPLGKLQSLENLHIWRMESVKRVGDEFLGIESDHHGSSSSSSVIIAFPKLKSLSIEV  483 (488)
Q Consensus       409 l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~  483 (488)
                      +++|+.|++++|. ++.+|. +.+.+|+.|.+.++..++.+|.                  ...|++|+.+.+.+
T Consensus       201 l~~L~~LdLs~N~-l~~lp~-~~~~~L~~L~~l~~~~l~~lP~------------------l~~l~~L~~l~l~~  255 (350)
T 4ay9_X          201 ASGPVILDISRTR-IHSLPS-YGLENLKKLRARSTYNLKKLPT------------------LEKLVALMEASLTY  255 (350)
T ss_dssp             EECCSEEECTTSC-CCCCCS-SSCTTCCEEECTTCTTCCCCCC------------------TTTCCSCCEEECSC
T ss_pred             CcccchhhcCCCC-cCccCh-hhhccchHhhhccCCCcCcCCC------------------chhCcChhhCcCCC
Confidence            9999999999997 455664 3367778888878888888863                  44688999888753

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.44  E-value=7.2e-14  Score=124.02  Aligned_cols=106  Identities=27%  Similarity=0.366  Sum_probs=55.1

Q ss_pred             cCcceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccCccCch-hhhhhccCcEeecCCCCCcc
Q 038150          179 KRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVLPE-TLCELYNLEKLDISDCFNLK  257 (488)
Q Consensus       179 ~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~lp~-~i~~L~~L~~L~l~~~~~~~  257 (488)
                      ++|++|++.+| .+.. ..+..|..+++|++|++++|.      +.         .+|. .+..+++|++|++++|. +.
T Consensus        28 ~~l~~L~l~~n-~l~~-~~~~~~~~l~~L~~L~l~~n~------l~---------~~~~~~~~~l~~L~~L~Ls~n~-l~   89 (208)
T 2o6s_A           28 AQTTYLDLETN-SLKS-LPNGVFDELTSLTQLYLGGNK------LQ---------SLPNGVFNKLTSLTYLNLSTNQ-LQ   89 (208)
T ss_dssp             TTCSEEECCSS-CCCC-CCTTTTTTCTTCSEEECCSSC------CC---------CCCTTTTTTCTTCCEEECCSSC-CC
T ss_pred             CCCcEEEcCCC-ccCc-CChhhhcccccCcEEECCCCc------cC---------ccChhhcCCCCCcCEEECCCCc-CC
Confidence            45666666665 3333 333345566666666666665      33         2222 23456666666666654 33


Q ss_pred             cCchh-hccccccceeeccCCCCCCCCCCCCCCcccccccCceeec
Q 038150          258 ELPEG-IGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFHVS  302 (488)
Q Consensus       258 ~lp~~-l~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~  302 (488)
                      .+|.. ++.+++|++|++++|.+....+..++++++|++|++.+|.
T Consensus        90 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~  135 (208)
T 2o6s_A           90 SLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQ  135 (208)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             ccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCc
Confidence            44332 4566666666666665332222234555666666555543

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.43  E-value=9.3e-14  Score=127.94  Aligned_cols=170  Identities=14%  Similarity=0.098  Sum_probs=111.3

Q ss_pred             cccCcceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccCccCchhhhhhccCcEeecCCCCCc
Q 038150          177 RVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVLPETLCELYNLEKLDISDCFNL  256 (488)
Q Consensus       177 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~lp~~i~~L~~L~~L~l~~~~~~  256 (488)
                      .+.++..+.+.++ .+..  ++ .+..+++|++|++++|.      +.         .+| .++.+++|++|++++|. +
T Consensus        17 ~l~~l~~l~l~~~-~i~~--~~-~~~~l~~L~~L~l~~n~------i~---------~l~-~l~~l~~L~~L~L~~N~-i   75 (263)
T 1xeu_A           17 GLANAVKQNLGKQ-SVTD--LV-SQKELSGVQNFNGDNSN------IQ---------SLA-GMQFFTNLKELHLSHNQ-I   75 (263)
T ss_dssp             HHHHHHHHHHTCS-CTTS--EE-CHHHHTTCSEEECTTSC------CC---------CCT-TGGGCTTCCEEECCSSC-C
T ss_pred             HHHHHHHHHhcCC-Cccc--cc-chhhcCcCcEEECcCCC------cc---------cch-HHhhCCCCCEEECCCCc-c
Confidence            4677778888876 4443  33 36788999999999998      54         444 67889999999999975 6


Q ss_pred             ccCchhhccccccceeeccCCCCCCCCCCCCCCcccccccCceeecCCCCCCCCcccCcccccCCCcccccccccccCCC
Q 038150          257 KELPEGIGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGRKACRLESLKNLEHLQVCGISRLGDVS  336 (488)
Q Consensus       257 ~~lp~~l~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~  336 (488)
                      ..+|. ++.+++|++|++++|.+ ..+|.. .. ++|++|++.+|.+.+         +..+..+++|+.|+++...- .
T Consensus        76 ~~~~~-l~~l~~L~~L~L~~N~l-~~l~~~-~~-~~L~~L~L~~N~l~~---------~~~l~~l~~L~~L~Ls~N~i-~  141 (263)
T 1xeu_A           76 SDLSP-LKDLTKLEELSVNRNRL-KNLNGI-PS-ACLSRLFLDNNELRD---------TDSLIHLKNLEILSIRNNKL-K  141 (263)
T ss_dssp             CCCGG-GTTCSSCCEEECCSSCC-SCCTTC-CC-SSCCEEECCSSCCSB---------SGGGTTCTTCCEEECTTSCC-C
T ss_pred             CCChh-hccCCCCCEEECCCCcc-CCcCcc-cc-CcccEEEccCCccCC---------ChhhcCcccccEEECCCCcC-C
Confidence            77776 88999999999999984 445543 33 889999988886554         12344555555555533221 1


Q ss_pred             ChhhhhHhhcccCCCCCceeecccCchhhhhhhccccchHHHhhhCCCCCCCCEEEeccccCCC
Q 038150          337 DVGEAKRLELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKELEIEYYRGNT  400 (488)
Q Consensus       337 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  400 (488)
                      ..     ..+..+++|+.|++++|.+.+.              ..+..+++|+.|++++|.+..
T Consensus       142 ~~-----~~l~~l~~L~~L~L~~N~i~~~--------------~~l~~l~~L~~L~l~~N~~~~  186 (263)
T 1xeu_A          142 SI-----VMLGFLSKLEVLDLHGNEITNT--------------GGLTRLKKVNWIDLTGQKCVN  186 (263)
T ss_dssp             BC-----GGGGGCTTCCEEECTTSCCCBC--------------TTSTTCCCCCEEEEEEEEEEC
T ss_pred             CC-----hHHccCCCCCEEECCCCcCcch--------------HHhccCCCCCEEeCCCCcccC
Confidence            10     1345556666666666655311              345555666666666655544

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.42  E-value=7.7e-13  Score=117.31  Aligned_cols=154  Identities=19%  Similarity=0.135  Sum_probs=82.5

Q ss_pred             ccCcEeecCCCCCcccCch-hhccccccceeeccCCCCCCCCC-CCCCCcccccccCceeecCCCCCCCCcccCcccccC
Q 038150          243 YNLEKLDISDCFNLKELPE-GIGKLINVKHLLNRGTNSLRYMP-VGIGRLTGLRTLGEFHVSAGGGVDGRKACRLESLKN  320 (488)
Q Consensus       243 ~~L~~L~l~~~~~~~~lp~-~l~~L~~L~~L~l~~~~~~~~lp-~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~  320 (488)
                      .+|++|++++|. +..+|. .+..+++|++|++++|.+. .+| ..++++++|++|++.+|.+..     .+        
T Consensus        28 ~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~-----~~--------   92 (208)
T 2o6s_A           28 AQTTYLDLETNS-LKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQLQS-----LP--------   92 (208)
T ss_dssp             TTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCC-----CC--------
T ss_pred             CCCcEEEcCCCc-cCcCChhhhcccccCcEEECCCCccC-ccChhhcCCCCCcCEEECCCCcCCc-----cC--------
Confidence            356667776654 334443 3466667777777666633 333 335666666666666554332     00        


Q ss_pred             CCcccccccccccCCCChhhhhHhhcccCCCCCceeecccCchhhhhhhccccchHHHhhhCCCCCCCCEEEeccccCCC
Q 038150          321 LEHLQVCGISRLGDVSDVGEAKRLELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKELEIEYYRGNT  400 (488)
Q Consensus       321 L~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  400 (488)
                                            ...+..+++|+.|++++|.+...            .+..+..+++|+.|++++|.+..
T Consensus        93 ----------------------~~~~~~l~~L~~L~L~~N~l~~~------------~~~~~~~l~~L~~L~l~~N~l~~  138 (208)
T 2o6s_A           93 ----------------------NGVFDKLTQLKELALNTNQLQSL------------PDGVFDKLTQLKDLRLYQNQLKS  138 (208)
T ss_dssp             ----------------------TTTTTTCTTCCEEECCSSCCCCC------------CTTTTTTCTTCCEEECCSSCCSC
T ss_pred             ----------------------HhHhcCccCCCEEEcCCCcCccc------------CHhHhccCCcCCEEECCCCccce
Confidence                                  01233445556666665554311            12234556666666666666665


Q ss_pred             CCchHHHhccCCcEEeecCCCCCCCCCCCCCCCCcCeeeecccccceeeCc
Q 038150          401 VFPSWMTSLTNLKSLDLSSCENCEQLPPLGKLQSLENLHIWRMESVKRVGD  451 (488)
Q Consensus       401 ~lp~~~~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~  451 (488)
                      ..+..+..+++|++|++++|+.      .+.+++|+.|.++.+..-..+|.
T Consensus       139 ~~~~~~~~l~~L~~L~l~~N~~------~~~~~~l~~L~~~~n~~~g~ip~  183 (208)
T 2o6s_A          139 VPDGVFDRLTSLQYIWLHDNPW------DCTCPGIRYLSEWINKHSGVVRN  183 (208)
T ss_dssp             CCTTTTTTCTTCCEEECCSCCB------CCCTTTTHHHHHHHHHCTTTBBC
T ss_pred             eCHHHhccCCCccEEEecCCCe------ecCCCCHHHHHHHHHhCCceeec
Confidence            2233355666777777766642      23445666666666553334443

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.42  E-value=5.2e-14  Score=148.10  Aligned_cols=195  Identities=15%  Similarity=0.112  Sum_probs=103.5

Q ss_pred             cccccceeeEEEEecCCcCccccccccCcceecccccc----hhhhhhHHHHHhcCCccceeecCCCcccccccCCcccc
Q 038150          153 ALDEKVRHLMLIFSKAASLPISTLRVKRMRTLLINDHS----LLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPR  228 (488)
Q Consensus       153 ~~~~~vr~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~----~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~  228 (488)
                      .....++++.+..+.....+..+.....|+.+.+.+..    .+.  ..+..+..+..|++|+|++|.      +.    
T Consensus       170 ~s~~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~--~~~~~~~~l~~L~~L~Ls~n~------l~----  237 (727)
T 4b8c_D          170 VSTPLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMV--MPKDSKYDDQLWHALDLSNLQ------IF----  237 (727)
T ss_dssp             ------------------------------------------------------CCCCCCEEECTTSC------CS----
T ss_pred             ecCCccceEEeeCCCCCcchhhHhhcCccCcccccCcccccccee--cChhhhccCCCCcEEECCCCC------CC----
Confidence            34456788888877776666555455555555544321    222  456778999999999999999      55    


Q ss_pred             cccCccCchhhhhhccCcEeecCCCCCcccCchhhccccccceeeccCCCCCCCCCCCCCCcccccccCceeecCCCCCC
Q 038150          229 NIEKLVLPETLCELYNLEKLDISDCFNLKELPEGIGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFHVSAGGGVD  308 (488)
Q Consensus       229 ~i~~l~lp~~i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~~  308 (488)
                           .+|..+..+++|++|+|++|. +..+|..+++|++|++|++++|.+. .+|..+++|++|++|++.+|.+..   
T Consensus       238 -----~l~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~---  307 (727)
T 4b8c_D          238 -----NISANIFKYDFLTRLYLNGNS-LTELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVTT---  307 (727)
T ss_dssp             -----CCCGGGGGCCSCSCCBCTTSC-CSCCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCCC---
T ss_pred             -----CCChhhcCCCCCCEEEeeCCc-CcccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCCc---
Confidence                 677788899999999999976 6699999999999999999999954 889999999999999998875432   


Q ss_pred             CCcccCcccccCCCcccccccccccCCCChhhhhHhhcccCCCCCceeecccCchhhhhhhccccchHHHhhhCCCCC-C
Q 038150          309 GRKACRLESLKNLEHLQVCGISRLGDVSDVGEAKRLELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPL-N  387 (488)
Q Consensus       309 ~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  387 (488)
                                                ++       ..+..+++|+.|++++|.+.+..            |..+..+. .
T Consensus       308 --------------------------lp-------~~~~~l~~L~~L~L~~N~l~~~~------------p~~~~~~~~~  342 (727)
T 4b8c_D          308 --------------------------LP-------WEFGNLCNLQFLGVEGNPLEKQF------------LKILTEKSVT  342 (727)
T ss_dssp             --------------------------CC-------SSTTSCTTCCCEECTTSCCCSHH------------HHHHHHHHHH
T ss_pred             --------------------------cC-------hhhhcCCCccEEeCCCCccCCCC------------hHHHhhcchh
Confidence                                      11       23556778888888888876432            22222111 1


Q ss_pred             CCEEEeccccCCCCCchHHHhccCCcEEeecCC
Q 038150          388 LKELEIEYYRGNTVFPSWMTSLTNLKSLDLSSC  420 (488)
Q Consensus       388 L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~  420 (488)
                      +..|.+++|.+...+|.      .|+.|+++.+
T Consensus       343 ~~~l~l~~N~l~~~~p~------~l~~l~l~~n  369 (727)
T 4b8c_D          343 GLIFYLRDNRPEIPLPH------ERRFIEINTD  369 (727)
T ss_dssp             HHHHHHHHCCCCCCCCC------C---------
T ss_pred             hhHHhhccCcccCcCcc------ccceeEeecc
Confidence            12356777777654554      5666777666

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.41  E-value=1.2e-12  Score=117.86  Aligned_cols=131  Identities=19%  Similarity=0.101  Sum_probs=66.2

Q ss_pred             ccCcEeecCCCCCcccCchhhccccccceeeccCCCCCCCCC-CCCCCcccccccCceeecCCCCCCCCcccCcccccCC
Q 038150          243 YNLEKLDISDCFNLKELPEGIGKLINVKHLLNRGTNSLRYMP-VGIGRLTGLRTLGEFHVSAGGGVDGRKACRLESLKNL  321 (488)
Q Consensus       243 ~~L~~L~l~~~~~~~~lp~~l~~L~~L~~L~l~~~~~~~~lp-~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L  321 (488)
                      ++|++|++++|......|..+..+++|++|++++|.+ ..+| ..++++++|++|++.+|.+..                
T Consensus        40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l-~~i~~~~~~~l~~L~~L~Ls~N~l~~----------------  102 (229)
T 3e6j_A           40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQLTV----------------  102 (229)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSCCCC----------------
T ss_pred             CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCC-CCcChhhcccCCCcCEEECCCCcCCc----------------
Confidence            5566666666553333345556666666666666653 3333 234556666666655553322                


Q ss_pred             CcccccccccccCCCChhhhhHhhcccCCCCCceeecccCchhhhhhhccccchHHHhhhCCCCCCCCEEEeccccCCCC
Q 038150          322 EHLQVCGISRLGDVSDVGEAKRLELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKELEIEYYRGNTV  401 (488)
Q Consensus       322 ~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  401 (488)
                                   ++      ...+..+++|+.|++++|.+             ..+|..+..+++|+.|++++|.+...
T Consensus       103 -------------l~------~~~~~~l~~L~~L~Ls~N~l-------------~~lp~~~~~l~~L~~L~L~~N~l~~~  150 (229)
T 3e6j_A          103 -------------LP------SAVFDRLVHLKELFMCCNKL-------------TELPRGIERLTHLTHLALDQNQLKSI  150 (229)
T ss_dssp             -------------CC------TTTTTTCTTCCEEECCSSCC-------------CSCCTTGGGCTTCSEEECCSSCCCCC
T ss_pred             -------------cC------hhHhCcchhhCeEeccCCcc-------------cccCcccccCCCCCEEECCCCcCCcc
Confidence                         00      01233445555555555554             23344445555555555555555542


Q ss_pred             CchHHHhccCCcEEeecCCCC
Q 038150          402 FPSWMTSLTNLKSLDLSSCEN  422 (488)
Q Consensus       402 lp~~~~~l~~L~~L~l~~~~~  422 (488)
                      .+..+..+++|+.|++++|+.
T Consensus       151 ~~~~~~~l~~L~~L~l~~N~~  171 (229)
T 3e6j_A          151 PHGAFDRLSSLTHAYLFGNPW  171 (229)
T ss_dssp             CTTTTTTCTTCCEEECTTSCB
T ss_pred             CHHHHhCCCCCCEEEeeCCCc
Confidence            223344555555555555543

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.38  E-value=1.1e-12  Score=117.38  Aligned_cols=59  Identities=10%  Similarity=0.171  Sum_probs=31.5

Q ss_pred             ccCcEeecCCCCCcccCch-hhccccccceeeccCCCCCCCCCCCCCCcccccccCceeec
Q 038150          243 YNLEKLDISDCFNLKELPE-GIGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFHVS  302 (488)
Q Consensus       243 ~~L~~L~l~~~~~~~~lp~-~l~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~  302 (488)
                      .+|++|++++|. +..+|. .+..+++|++|++++|.+....|..+.++++|++|++++|.
T Consensus        32 ~~l~~L~l~~n~-i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~   91 (220)
T 2v9t_B           32 ETITEIRLEQNT-IKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK   91 (220)
T ss_dssp             TTCCEEECCSSC-CCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred             cCCCEEECCCCc-CCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence            345666666644 333332 45556666666666665443334555556666666555554

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.37  E-value=1.6e-12  Score=116.96  Aligned_cols=149  Identities=19%  Similarity=0.138  Sum_probs=81.7

Q ss_pred             CcEeecCCCCCcccCchhhccccccceeeccCCCCCCCCCCCCCCcccccccCceeecCCCCCCCCcccCcccccCCCcc
Q 038150          245 LEKLDISDCFNLKELPEGIGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGRKACRLESLKNLEHL  324 (488)
Q Consensus       245 L~~L~l~~~~~~~~lp~~l~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L  324 (488)
                      .+.++.+++ .+..+|..+.  ++|++|++++|.+....|..++++++|++|++.+|.+..                   
T Consensus        21 ~~~v~c~~~-~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~-------------------   78 (229)
T 3e6j_A           21 GTTVDCRSK-RHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGA-------------------   78 (229)
T ss_dssp             TTEEECTTS-CCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-------------------
T ss_pred             CCEeEccCC-CcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCC-------------------
Confidence            345555553 3555555443  566666666666444445556666666666665554322                   


Q ss_pred             cccccccccCCCChhhhhHhhcccCCCCCceeecccCchhhhhhhccccchHHHhhhCCCCCCCCEEEeccccCCCCCch
Q 038150          325 QVCGISRLGDVSDVGEAKRLELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKELEIEYYRGNTVFPS  404 (488)
Q Consensus       325 ~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~lp~  404 (488)
                                ++      ...+..+++|+.|++++|.+...            .+..+..+++|+.|++++|.+.. +|.
T Consensus        79 ----------i~------~~~~~~l~~L~~L~Ls~N~l~~l------------~~~~~~~l~~L~~L~Ls~N~l~~-lp~  129 (229)
T 3e6j_A           79 ----------LP------VGVFDSLTQLTVLDLGTNQLTVL------------PSAVFDRLVHLKELFMCCNKLTE-LPR  129 (229)
T ss_dssp             ----------CC------TTTTTTCTTCCEEECCSSCCCCC------------CTTTTTTCTTCCEEECCSSCCCS-CCT
T ss_pred             ----------cC------hhhcccCCCcCEEECCCCcCCcc------------ChhHhCcchhhCeEeccCCcccc-cCc
Confidence                      00      01233455566666666655311            12334556666666666666665 666


Q ss_pred             HHHhccCCcEEeecCCCCCCCCCC-CCCCCCcCeeeecccc
Q 038150          405 WMTSLTNLKSLDLSSCENCEQLPP-LGKLQSLENLHIWRME  444 (488)
Q Consensus       405 ~~~~l~~L~~L~l~~~~~~~~~~~-l~~l~~L~~L~l~~~~  444 (488)
                      .+..+++|++|++++|......+. +..+++|+.|++.+|+
T Consensus       130 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~  170 (229)
T 3e6j_A          130 GIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNP  170 (229)
T ss_dssp             TGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred             ccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCC
Confidence            666666666666666654432222 5566666666666554

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.36  E-value=5.6e-13  Score=128.81  Aligned_cols=62  Identities=15%  Similarity=0.136  Sum_probs=31.3

Q ss_pred             cccCCCCCceeecccCchhhhhhhccccchHHHhhh-C---CCCCCCCEEEeccccCCCCCc-hHHHhccC--CcEEeec
Q 038150          346 LDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEA-L---RPPLNLKELEIEYYRGNTVFP-SWMTSLTN--LKSLDLS  418 (488)
Q Consensus       346 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~L~~L~l~~~~~~~~lp-~~~~~l~~--L~~L~l~  418 (488)
                      +..+++|+.|++++|.+..             +|.. +   ..+++|+.|+|++|.+.. +| ..+..+++  |+.|++.
T Consensus       132 ~~~l~~L~~L~L~~N~l~~-------------l~~~~~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~~~l~~l~l~  197 (361)
T 2xot_A          132 FEDMAQLQKLYLSQNQISR-------------FPVELIKDGNKLPKLMLLDLSSNKLKK-LPLTDLQKLPAWVKNGLYLH  197 (361)
T ss_dssp             TTTCTTCCEEECCSSCCCS-------------CCGGGTC----CTTCCEEECCSSCCCC-CCHHHHHHSCHHHHTTEECC
T ss_pred             hCCcccCCEEECCCCcCCe-------------eCHHHhcCcccCCcCCEEECCCCCCCc-cCHHHhhhccHhhcceEEec
Confidence            3445566666666665532             1222 1   345566666666666655 33 34445554  3556666


Q ss_pred             CCC
Q 038150          419 SCE  421 (488)
Q Consensus       419 ~~~  421 (488)
                      +|+
T Consensus       198 ~N~  200 (361)
T 2xot_A          198 NNP  200 (361)
T ss_dssp             SSC
T ss_pred             CCC
Confidence            555

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.35  E-value=2.1e-12  Score=115.46  Aligned_cols=148  Identities=16%  Similarity=0.129  Sum_probs=107.4

Q ss_pred             cEeecCCCCCcccCchhhccccccceeeccCCCCCCCCCCCCCCcccccccCceeecCCCCCCCCcccCcccccCCCccc
Q 038150          246 EKLDISDCFNLKELPEGIGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGRKACRLESLKNLEHLQ  325 (488)
Q Consensus       246 ~~L~l~~~~~~~~lp~~l~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~  325 (488)
                      +.++++++ .+..+|..+.  ++|++|++++|.+....+..+.++++|++|++.+|.+..     .              
T Consensus        14 ~~v~c~~~-~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~-----~--------------   71 (220)
T 2v9t_B           14 NIVDCRGK-GLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISE-----L--------------   71 (220)
T ss_dssp             TEEECTTS-CCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCE-----E--------------
T ss_pred             CEEEcCCC-CcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCC-----c--------------
Confidence            67888885 4788887665  789999999998554444578999999999998876543     0              


Q ss_pred             ccccccccCCCChhhhhHhhcccCCCCCceeecccCchhhhhhhccccchHHHh-hhCCCCCCCCEEEeccccCCCCCch
Q 038150          326 VCGISRLGDVSDVGEAKRLELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLL-EALRPPLNLKELEIEYYRGNTVFPS  404 (488)
Q Consensus       326 ~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~lp~  404 (488)
                                      .+..+.++++|+.|++++|.+.             .++ ..+..+++|+.|+|++|.+....|.
T Consensus        72 ----------------~~~~~~~l~~L~~L~Ls~N~l~-------------~l~~~~f~~l~~L~~L~L~~N~l~~~~~~  122 (220)
T 2v9t_B           72 ----------------APDAFQGLRSLNSLVLYGNKIT-------------ELPKSLFEGLFSLQLLLLNANKINCLRVD  122 (220)
T ss_dssp             ----------------CTTTTTTCSSCCEEECCSSCCC-------------CCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred             ----------------CHHHhhCCcCCCEEECCCCcCC-------------ccCHhHccCCCCCCEEECCCCCCCEeCHH
Confidence                            0133455677777778777763             223 3356778888888888887774566


Q ss_pred             HHHhccCCcEEeecCCCCCCCCCC-CCCCCCcCeeeecccc
Q 038150          405 WMTSLTNLKSLDLSSCENCEQLPP-LGKLQSLENLHIWRME  444 (488)
Q Consensus       405 ~~~~l~~L~~L~l~~~~~~~~~~~-l~~l~~L~~L~l~~~~  444 (488)
                      .+..+++|++|++++|......+. +..+++|++|++++|+
T Consensus       123 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~  163 (220)
T 2v9t_B          123 AFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNP  163 (220)
T ss_dssp             TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             HcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCC
Confidence            777888888888888876555444 7778888888888776

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.35  E-value=1.8e-12  Score=115.86  Aligned_cols=130  Identities=12%  Similarity=0.048  Sum_probs=68.5

Q ss_pred             CcEeecCCCCCcccC-c-hhhccccccceeeccCCCCCCCCCCCCCCcccccccCceeecCCCCCCCCcccCcccccCCC
Q 038150          245 LEKLDISDCFNLKEL-P-EGIGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGRKACRLESLKNLE  322 (488)
Q Consensus       245 L~~L~l~~~~~~~~l-p-~~l~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~  322 (488)
                      +++|++++|. +..+ | ..+..+++|++|++++|.+....+..++++++|++|++.+|.+..     .           
T Consensus        34 ~~~L~L~~N~-l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~-----~-----------   96 (220)
T 2v70_A           34 TAELRLNNNE-FTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLEN-----V-----------   96 (220)
T ss_dssp             CSEEECCSSC-CCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCC-----C-----------
T ss_pred             CCEEEcCCCc-CCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCc-----c-----------
Confidence            4667777654 3433 2 235666677777776666433333456666666666666654432     0           


Q ss_pred             cccccccccccCCCChhhhhHhhcccCCCCCceeecccCchhhhhhhccccchHHHhhhCCCCCCCCEEEeccccCCCCC
Q 038150          323 HLQVCGISRLGDVSDVGEAKRLELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKELEIEYYRGNTVF  402 (488)
Q Consensus       323 ~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l  402 (488)
                                   +      ...+..+++|+.|++++|.+..            ..+..+..+++|+.|+|++|.+....
T Consensus        97 -------------~------~~~~~~l~~L~~L~Ls~N~l~~------------~~~~~~~~l~~L~~L~L~~N~l~~~~  145 (220)
T 2v70_A           97 -------------Q------HKMFKGLESLKTLMLRSNRITC------------VGNDSFIGLSSVRLLSLYDNQITTVA  145 (220)
T ss_dssp             -------------C------GGGGTTCSSCCEEECTTSCCCC------------BCTTSSTTCTTCSEEECTTSCCCCBC
T ss_pred             -------------C------HhHhcCCcCCCEEECCCCcCCe------------ECHhHcCCCccCCEEECCCCcCCEEC
Confidence                         0      0123344555555555555431            12344555555666666655555533


Q ss_pred             chHHHhccCCcEEeecCCCC
Q 038150          403 PSWMTSLTNLKSLDLSSCEN  422 (488)
Q Consensus       403 p~~~~~l~~L~~L~l~~~~~  422 (488)
                      |..+..+++|+.|++++|+.
T Consensus       146 ~~~~~~l~~L~~L~L~~N~l  165 (220)
T 2v70_A          146 PGAFDTLHSLSTLNLLANPF  165 (220)
T ss_dssp             TTTTTTCTTCCEEECCSCCE
T ss_pred             HHHhcCCCCCCEEEecCcCC
Confidence            55555555666666655553

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.33  E-value=3.5e-12  Score=114.01  Aligned_cols=150  Identities=17%  Similarity=0.124  Sum_probs=118.0

Q ss_pred             CcEeecCCCCCcccCchhhccccccceeeccCCCCCCCCCC-CCCCcccccccCceeecCCCCCCCCcccCcccccCCCc
Q 038150          245 LEKLDISDCFNLKELPEGIGKLINVKHLLNRGTNSLRYMPV-GIGRLTGLRTLGEFHVSAGGGVDGRKACRLESLKNLEH  323 (488)
Q Consensus       245 L~~L~l~~~~~~~~lp~~l~~L~~L~~L~l~~~~~~~~lp~-~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~  323 (488)
                      -++++++++. +..+|..+.  ..+++|++++|.+....|. .++++++|++|++.+|.+..                  
T Consensus        13 ~~~l~~s~n~-l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~------------------   71 (220)
T 2v70_A           13 GTTVDCSNQK-LNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITD------------------   71 (220)
T ss_dssp             TTEEECCSSC-CSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCE------------------
T ss_pred             CCEeEeCCCC-cccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCE------------------
Confidence            3688998854 777887664  4568999999985444343 37889999999988775443                  


Q ss_pred             ccccccccccCCCChhhhhHhhcccCCCCCceeecccCchhhhhhhccccchHHHhhhCCCCCCCCEEEeccccCCCCCc
Q 038150          324 LQVCGISRLGDVSDVGEAKRLELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKELEIEYYRGNTVFP  403 (488)
Q Consensus       324 L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~lp  403 (488)
                                 ++      ...+..+++|+.|++++|.+...            .+..+..+++|+.|++++|.+....|
T Consensus        72 -----------i~------~~~~~~l~~L~~L~Ls~N~l~~~------------~~~~~~~l~~L~~L~Ls~N~l~~~~~  122 (220)
T 2v70_A           72 -----------IE------EGAFEGASGVNEILLTSNRLENV------------QHKMFKGLESLKTLMLRSNRITCVGN  122 (220)
T ss_dssp             -----------EC------TTTTTTCTTCCEEECCSSCCCCC------------CGGGGTTCSSCCEEECTTSCCCCBCT
T ss_pred             -----------EC------HHHhCCCCCCCEEECCCCccCcc------------CHhHhcCCcCCCEEECCCCcCCeECH
Confidence                       00      12456678899999999988532            34568889999999999999998558


Q ss_pred             hHHHhccCCcEEeecCCCCCCCCCC-CCCCCCcCeeeecccc
Q 038150          404 SWMTSLTNLKSLDLSSCENCEQLPP-LGKLQSLENLHIWRME  444 (488)
Q Consensus       404 ~~~~~l~~L~~L~l~~~~~~~~~~~-l~~l~~L~~L~l~~~~  444 (488)
                      ..+..+++|++|++++|......|. +..+++|++|++++|+
T Consensus       123 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~  164 (220)
T 2v70_A          123 DSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANP  164 (220)
T ss_dssp             TSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred             hHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcC
Confidence            8889999999999999997776665 8999999999999987

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.32  E-value=2.7e-12  Score=109.64  Aligned_cols=132  Identities=20%  Similarity=0.137  Sum_probs=106.7

Q ss_pred             ccccceeeEEEEecCC--cCccccccccCcceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCccccccc
Q 038150          154 LDEKVRHLMLIFSKAA--SLPISTLRVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIE  231 (488)
Q Consensus       154 ~~~~vr~l~l~~~~~~--~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~  231 (488)
                      ....++++.+..+...  .+|..+..+++|++|++.+| .+.. .  ..+..+++|++|++++|.+     ..       
T Consensus        22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n-~l~~-~--~~~~~l~~L~~L~Ls~N~l-----~~-------   85 (168)
T 2ell_A           22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINV-GLIS-V--SNLPKLPKLKKLELSENRI-----FG-------   85 (168)
T ss_dssp             CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESS-CCCC-C--SSCCCCSSCCEEEEESCCC-----CS-------
T ss_pred             CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCC-CCCC-h--hhhccCCCCCEEECcCCcC-----ch-------
Confidence            3467889999988886  88888889999999999998 4654 3  5578899999999999984     32       


Q ss_pred             CccCchhhhhhccCcEeecCCCCCcccCc--hhhccccccceeeccCCCCCCCCCC----CCCCcccccccCceeecCCC
Q 038150          232 KLVLPETLCELYNLEKLDISDCFNLKELP--EGIGKLINVKHLLNRGTNSLRYMPV----GIGRLTGLRTLGEFHVSAGG  305 (488)
Q Consensus       232 ~l~lp~~i~~L~~L~~L~l~~~~~~~~lp--~~l~~L~~L~~L~l~~~~~~~~lp~----~i~~L~~L~~L~l~~~~~~~  305 (488)
                        .+|..++.+++|++|++++|. +..+|  ..+..+++|++|++++|.+ ..+|.    .+..+++|++|++..|....
T Consensus        86 --~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~l~~l~~L~~L~l~~N~l-~~~~~~~~~~~~~l~~L~~L~l~~n~~~~  161 (168)
T 2ell_A           86 --GLDMLAEKLPNLTHLNLSGNK-LKDISTLEPLKKLECLKSLDLFNCEV-TNLNDYRESVFKLLPQLTYLDGYDREDQE  161 (168)
T ss_dssp             --CCCHHHHHCTTCCEEECBSSS-CCSSGGGGGGSSCSCCCEEECCSSGG-GTSTTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred             --HHHHHHhhCCCCCEEeccCCc-cCcchhHHHHhcCCCCCEEEeeCCcC-cchHHHHHHHHHhCccCcEecCCCCChhh
Confidence              366777789999999999975 66665  6888999999999999984 44555    68889999999998886543

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.28  E-value=3.9e-12  Score=122.88  Aligned_cols=171  Identities=22%  Similarity=0.189  Sum_probs=124.0

Q ss_pred             cceeecCCCcccccccCCcccccccCccCchhhhhhccCcEeecCCCCCcccCchh-hc-cccccceeeccCCCCCCCCC
Q 038150          207 LRALDFGGSYHSTRLLTPEVPRNIEKLVLPETLCELYNLEKLDISDCFNLKELPEG-IG-KLINVKHLLNRGTNSLRYMP  284 (488)
Q Consensus       207 Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~lp~~i~~L~~L~~L~l~~~~~~~~lp~~-l~-~L~~L~~L~l~~~~~~~~lp  284 (488)
                      -++++++++.      +..+|.         .+.  ..+++|++++|. +..+|.. +. .+++|++|++++|.+....+
T Consensus        20 ~~~l~c~~~~------l~~iP~---------~~~--~~l~~L~Ls~N~-l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~   81 (361)
T 2xot_A           20 SNILSCSKQQ------LPNVPQ---------SLP--SYTALLDLSHNN-LSRLRAEWTPTRLTNLHSLLLSHNHLNFISS   81 (361)
T ss_dssp             TTEEECCSSC------CSSCCS---------SCC--TTCSEEECCSSC-CCEECTTSSSSCCTTCCEEECCSSCCCEECT
T ss_pred             CCEEEeCCCC------cCccCc---------cCC--CCCCEEECCCCC-CCccChhhhhhcccccCEEECCCCcCCccCh
Confidence            4788888888      664444         322  347889999976 5555544 44 88999999999988544444


Q ss_pred             CCCCCcccccccCceeecCCCCCCCCcccCcccccCCCcccccccccccCCCChhhhhHhhcccCCCCCceeecccCchh
Q 038150          285 VGIGRLTGLRTLGEFHVSAGGGVDGRKACRLESLKNLEHLQVCGISRLGDVSDVGEAKRLELDKKKYLSSLTLWFDKEEE  364 (488)
Q Consensus       285 ~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  364 (488)
                      ..++++++|++|++++|.+..                             ++      ...+..+++|+.|++++|.+..
T Consensus        82 ~~~~~l~~L~~L~Ls~N~l~~-----------------------------~~------~~~~~~l~~L~~L~L~~N~i~~  126 (361)
T 2xot_A           82 EAFVPVPNLRYLDLSSNHLHT-----------------------------LD------EFLFSDLQALEVLLLYNNHIVV  126 (361)
T ss_dssp             TTTTTCTTCCEEECCSSCCCE-----------------------------EC------TTTTTTCTTCCEEECCSSCCCE
T ss_pred             hhccCCCCCCEEECCCCcCCc-----------------------------CC------HHHhCCCcCCCEEECCCCcccE
Confidence            568888999999888775432                             00      1245667889999999998752


Q ss_pred             hhhhhccccchHHHhhhCCCCCCCCEEEeccccCCCCCchHH----HhccCCcEEeecCCCCCCCCCC--CCCCCC--cC
Q 038150          365 EEGERRKNEDNQLLLEALRPPLNLKELEIEYYRGNTVFPSWM----TSLTNLKSLDLSSCENCEQLPP--LGKLQS--LE  436 (488)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~lp~~~----~~l~~L~~L~l~~~~~~~~~~~--l~~l~~--L~  436 (488)
                                  ..+..+..+++|+.|+|++|.+.. +|..+    ..+++|+.|+|++|.+. .+|.  +..++.  |+
T Consensus       127 ------------~~~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~~~l~  192 (361)
T 2xot_A          127 ------------VDRNAFEDMAQLQKLYLSQNQISR-FPVELIKDGNKLPKLMLLDLSSNKLK-KLPLTDLQKLPAWVKN  192 (361)
T ss_dssp             ------------ECTTTTTTCTTCCEEECCSSCCCS-CCGGGTC----CTTCCEEECCSSCCC-CCCHHHHHHSCHHHHT
T ss_pred             ------------ECHHHhCCcccCCEEECCCCcCCe-eCHHHhcCcccCCcCCEEECCCCCCC-ccCHHHhhhccHhhcc
Confidence                        235678889999999999999988 77665    57899999999999855 4542  666776  48


Q ss_pred             eeeecccc
Q 038150          437 NLHIWRME  444 (488)
Q Consensus       437 ~L~l~~~~  444 (488)
                      .|++.+|+
T Consensus       193 ~l~l~~N~  200 (361)
T 2xot_A          193 GLYLHNNP  200 (361)
T ss_dssp             TEECCSSC
T ss_pred             eEEecCCC
Confidence            89998887

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.25  E-value=1.9e-12  Score=136.26  Aligned_cols=115  Identities=21%  Similarity=0.201  Sum_probs=96.2

Q ss_pred             CccccccccCcceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccCccCchhhhhhccCcEeec
Q 038150          171 LPISTLRVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVLPETLCELYNLEKLDI  250 (488)
Q Consensus       171 ~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~lp~~i~~L~~L~~L~l  250 (488)
                      .+..+..++.|++|++++| .+.  .++..+.++++|++|+|++|.      +.         .+|..+++|++|++|+|
T Consensus       216 ~~~~~~~l~~L~~L~Ls~n-~l~--~l~~~~~~l~~L~~L~Ls~N~------l~---------~lp~~~~~l~~L~~L~L  277 (727)
T 4b8c_D          216 PKDSKYDDQLWHALDLSNL-QIF--NISANIFKYDFLTRLYLNGNS------LT---------ELPAEIKNLSNLRVLDL  277 (727)
T ss_dssp             ------CCCCCCEEECTTS-CCS--CCCGGGGGCCSCSCCBCTTSC------CS---------CCCGGGGGGTTCCEEEC
T ss_pred             ChhhhccCCCCcEEECCCC-CCC--CCChhhcCCCCCCEEEeeCCc------Cc---------ccChhhhCCCCCCEEeC
Confidence            3556778999999999998 454  355556799999999999999      54         67888999999999999


Q ss_pred             CCCCCcccCchhhccccccceeeccCCCCCCCCCCCCCCcccccccCceeecCCC
Q 038150          251 SDCFNLKELPEGIGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFHVSAGG  305 (488)
Q Consensus       251 ~~~~~~~~lp~~l~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~  305 (488)
                      ++|. +..+|..++.|++|++|++++|. +..+|..+++|++|++|++.+|.+.+
T Consensus       278 s~N~-l~~lp~~~~~l~~L~~L~L~~N~-l~~lp~~~~~l~~L~~L~L~~N~l~~  330 (727)
T 4b8c_D          278 SHNR-LTSLPAELGSCFQLKYFYFFDNM-VTTLPWEFGNLCNLQFLGVEGNPLEK  330 (727)
T ss_dssp             TTSC-CSSCCSSGGGGTTCSEEECCSSC-CCCCCSSTTSCTTCCCEECTTSCCCS
T ss_pred             cCCc-CCccChhhcCCCCCCEEECCCCC-CCccChhhhcCCCccEEeCCCCccCC
Confidence            9987 66999999999999999999998 56889999999999999999998765

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.24  E-value=3.3e-12  Score=106.67  Aligned_cols=125  Identities=22%  Similarity=0.179  Sum_probs=88.7

Q ss_pred             cccceeeEEEEecCC--cCccccccccCcceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccC
Q 038150          155 DEKVRHLMLIFSKAA--SLPISTLRVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEK  232 (488)
Q Consensus       155 ~~~vr~l~l~~~~~~--~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~  232 (488)
                      ...++++.+..+...  .+|..+..+++|++|++.+| .+.. .  ..+..+++|++|++++|.+     .+        
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~-~--~~~~~l~~L~~L~Ls~n~i-----~~--------   78 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINV-GLTS-I--ANLPKLNKLKKLELSDNRV-----SG--------   78 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTS-CCCC-C--TTCCCCTTCCEEECCSSCC-----CS--------
T ss_pred             CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCC-CCCC-c--hhhhcCCCCCEEECCCCcc-----cc--------
Confidence            356777777777765  67777777888888888887 5554 3  4467788888888888874     22        


Q ss_pred             ccCchhhhhhccCcEeecCCCCCcccCc--hhhccccccceeeccCCCCCCCCCC----CCCCcccccccCce
Q 038150          233 LVLPETLCELYNLEKLDISDCFNLKELP--EGIGKLINVKHLLNRGTNSLRYMPV----GIGRLTGLRTLGEF  299 (488)
Q Consensus       233 l~lp~~i~~L~~L~~L~l~~~~~~~~lp--~~l~~L~~L~~L~l~~~~~~~~lp~----~i~~L~~L~~L~l~  299 (488)
                       .+|..++.+++|++|++++|. +..+|  ..++.+++|++|++++|.+ ..+|.    .++.+++|++|+++
T Consensus        79 -~~~~~~~~l~~L~~L~ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N~l-~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           79 -GLEVLAEKCPNLTHLNLSGNK-IKDLSTIEPLKKLENLKSLDLFNCEV-TNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             -CTHHHHHHCTTCCEEECTTSC-CCSHHHHGGGGGCTTCCEEECTTCGG-GGSTTHHHHHHHHCTTCCEETTB
T ss_pred             -hHHHHhhhCCCCCEEECCCCc-CCChHHHHHHhhCCCCCEEeCcCCcc-cchHHHHHHHHHHCCCcccccCC
Confidence             366667778888888888865 55544  6778888888888888874 33443    46777778777764

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.23  E-value=1.3e-11  Score=105.40  Aligned_cols=41  Identities=24%  Similarity=0.182  Sum_probs=24.2

Q ss_pred             hhCCCCCCCCEEEeccccCCCCCch----HHHhccCCcEEeecCCC
Q 038150          380 EALRPPLNLKELEIEYYRGNTVFPS----WMTSLTNLKSLDLSSCE  421 (488)
Q Consensus       380 ~~~~~~~~L~~L~l~~~~~~~~lp~----~~~~l~~L~~L~l~~~~  421 (488)
                      ..+..+++|+.|++++|.+.. +|.    .+..+++|++|++++|.
T Consensus       114 ~~l~~l~~L~~L~l~~N~l~~-~~~~~~~~~~~l~~L~~L~l~~n~  158 (168)
T 2ell_A          114 EPLKKLECLKSLDLFNCEVTN-LNDYRESVFKLLPQLTYLDGYDRE  158 (168)
T ss_dssp             GGGSSCSCCCEEECCSSGGGT-STTHHHHHHTTCSSCCEETTEETT
T ss_pred             HHHhcCCCCCEEEeeCCcCcc-hHHHHHHHHHhCccCcEecCCCCC
Confidence            345555666666666666655 443    45566666666666665

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.23  E-value=1.9e-11  Score=102.05  Aligned_cols=128  Identities=18%  Similarity=0.164  Sum_probs=81.6

Q ss_pred             ccCcEeecCCCCCc-ccCchhhccccccceeeccCCCCCCCCCCCCCCcccccccCceeecCCCCCCCCcccCcccccCC
Q 038150          243 YNLEKLDISDCFNL-KELPEGIGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGRKACRLESLKNL  321 (488)
Q Consensus       243 ~~L~~L~l~~~~~~-~~lp~~l~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L  321 (488)
                      ++|++|++++|... ..+|..+..+++|++|++++|.+. .+ ..++++++|++|++++|.+.+.               
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~-~~-~~~~~l~~L~~L~Ls~n~i~~~---------------   79 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SI-ANLPKLNKLKKLELSDNRVSGG---------------   79 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCC-CC-TTCCCCTTCCEEECCSSCCCSC---------------
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCC-Cc-hhhhcCCCCCEEECCCCcccch---------------
Confidence            55666666665532 256666666667777777666533 23 4566667777776666543320               


Q ss_pred             CcccccccccccCCCChhhhhHhhcccCCCCCceeecccCchhhhhhhccccchHHHhhhCCCCCCCCEEEeccccCCCC
Q 038150          322 EHLQVCGISRLGDVSDVGEAKRLELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKELEIEYYRGNTV  401 (488)
Q Consensus       322 ~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  401 (488)
                                          .+..+..+++|+.|++++|.+.+.           ..+..+..+++|+.|++++|.+.. 
T Consensus        80 --------------------~~~~~~~l~~L~~L~ls~N~i~~~-----------~~~~~~~~l~~L~~L~l~~N~l~~-  127 (149)
T 2je0_A           80 --------------------LEVLAEKCPNLTHLNLSGNKIKDL-----------STIEPLKKLENLKSLDLFNCEVTN-  127 (149)
T ss_dssp             --------------------THHHHHHCTTCCEEECTTSCCCSH-----------HHHGGGGGCTTCCEEECTTCGGGG-
T ss_pred             --------------------HHHHhhhCCCCCEEECCCCcCCCh-----------HHHHHHhhCCCCCEEeCcCCcccc-
Confidence                                113344567777888887776421           234667778888888888888877 


Q ss_pred             Cch----HHHhccCCcEEeecC
Q 038150          402 FPS----WMTSLTNLKSLDLSS  419 (488)
Q Consensus       402 lp~----~~~~l~~L~~L~l~~  419 (488)
                      +|.    .++.+++|++|++++
T Consensus       128 ~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A          128 LNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             STTHHHHHHHHCTTCCEETTBC
T ss_pred             hHHHHHHHHHHCCCcccccCCC
Confidence            554    677888888888763

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.18  E-value=1.6e-12  Score=114.29  Aligned_cols=157  Identities=18%  Similarity=0.105  Sum_probs=102.4

Q ss_pred             HhcCCccceeecCCCcccccccCCcccccccCccCchhhhhhccCcEeecCCCCCcccCchhhccccccceeeccCCCCC
Q 038150          201 FRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVLPETLCELYNLEKLDISDCFNLKELPEGIGKLINVKHLLNRGTNSL  280 (488)
Q Consensus       201 ~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~lp~~i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~L~l~~~~~~  280 (488)
                      +.....+..++++.+.+     .+.+|. +.  .+|..++.+++|++|++++|. +..+| .+..+++|++|++++|. .
T Consensus        14 ~~~~~~l~~l~l~~~~l-----~~~~~~-l~--~l~~~~~~l~~L~~L~ls~n~-l~~l~-~~~~l~~L~~L~l~~n~-l   82 (198)
T 1ds9_A           14 FEERKSVVATEAEKVEL-----HGMIPP-IE--KMDATLSTLKACKHLALSTNN-IEKIS-SLSGMENLRILSLGRNL-I   82 (198)
T ss_dssp             HHHTTCCCCTTCSEEEC-----CBCCTT-CC--CCHHHHHHTTTCSEEECSEEE-ESCCC-CHHHHTTCCEEEEEEEE-E
T ss_pred             HHhcccccCcchheeEe-----ccccCc-Hh--hhhHHHhcCCCCCEEECCCCC-Ccccc-ccccCCCCCEEECCCCC-c
Confidence            56777888888887775     333321 11  566688888899999998865 66677 88888888999888887 4


Q ss_pred             CCCCCCCCCcccccccCceeecCCCCCCCCcccCcccccCCCcccccccccccCCCChhhhhHhhcccCCCCCceeeccc
Q 038150          281 RYMPVGIGRLTGLRTLGEFHVSAGGGVDGRKACRLESLKNLEHLQVCGISRLGDVSDVGEAKRLELDKKKYLSSLTLWFD  360 (488)
Q Consensus       281 ~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~  360 (488)
                      ..+|..++.+++|++|++.+|.+.+     .                                ..+..+++|+.|++++|
T Consensus        83 ~~l~~~~~~~~~L~~L~L~~N~l~~-----l--------------------------------~~~~~l~~L~~L~l~~N  125 (198)
T 1ds9_A           83 KKIENLDAVADTLEELWISYNQIAS-----L--------------------------------SGIEKLVNLRVLYMSNN  125 (198)
T ss_dssp             CSCSSHHHHHHHCSEEEEEEEECCC-----H--------------------------------HHHHHHHHSSEEEESEE
T ss_pred             ccccchhhcCCcCCEEECcCCcCCc-----C--------------------------------CccccCCCCCEEECCCC
Confidence            4677767777888888888876543     0                                12334455666666666


Q ss_pred             CchhhhhhhccccchHHHhhhCCCCCCCCEEEeccccCCCCCch----------HHHhccCCcEEe
Q 038150          361 KEEEEEGERRKNEDNQLLLEALRPPLNLKELEIEYYRGNTVFPS----------WMTSLTNLKSLD  416 (488)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~lp~----------~~~~l~~L~~L~  416 (488)
                      .+...           .....+..+++|+.|++++|.+....|.          .+..+++|+.|+
T Consensus       126 ~i~~~-----------~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld  180 (198)
T 1ds9_A          126 KITNW-----------GEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             ECCCH-----------HHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred             cCCch-----------hHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence            65321           1113456666777777777665442222          255667777665

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.15  E-value=1.4e-11  Score=107.50  Aligned_cols=129  Identities=18%  Similarity=0.132  Sum_probs=95.5

Q ss_pred             eeeEEEEecCCcCccccccccCcceecccccchhhhhhHHH-HHhcCCccceeecCCCcccccccCCcccccccCccCch
Q 038150          159 RHLMLIFSKAASLPISTLRVKRMRTLLINDHSLLNAAILEE-LFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVLPE  237 (488)
Q Consensus       159 r~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~-~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~lp~  237 (488)
                      +.+.++.+....+|..+.  .++++|++.+| .+.. ..+. .|..+++|++|+|++|.+     .+         ..|.
T Consensus        11 ~~l~~s~~~l~~ip~~~~--~~l~~L~l~~n-~i~~-~~~~~~~~~l~~L~~L~Ls~N~l-----~~---------~~~~   72 (192)
T 1w8a_A           11 TTVDCTGRGLKEIPRDIP--LHTTELLLNDN-ELGR-ISSDGLFGRLPHLVKLELKRNQL-----TG---------IEPN   72 (192)
T ss_dssp             TEEECTTSCCSSCCSCCC--TTCSEEECCSC-CCCS-BCCSCSGGGCTTCCEEECCSSCC-----CC---------BCTT
T ss_pred             CEEEcCCCCcCcCccCCC--CCCCEEECCCC-cCCc-cCCccccccCCCCCEEECCCCCC-----CC---------cCHh
Confidence            456666666677776553  48899999887 5553 3332 378889999999999984     32         3356


Q ss_pred             hhhhhccCcEeecCCCCCcccCchhhccccccceeeccCCCCCCCCCCCCCCcccccccCceeecCCC
Q 038150          238 TLCELYNLEKLDISDCFNLKELPEGIGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFHVSAGG  305 (488)
Q Consensus       238 ~i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~  305 (488)
                      .++.+++|++|++++|......|..+..+++|++|++++|.+....|..++.+++|++|++.+|.+..
T Consensus        73 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c  140 (192)
T 1w8a_A           73 AFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC  140 (192)
T ss_dssp             TTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred             HcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccC
Confidence            77888899999999976444444557888999999999988766667788889999999888887654

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.12  E-value=2.2e-11  Score=104.70  Aligned_cols=127  Identities=18%  Similarity=0.103  Sum_probs=73.1

Q ss_pred             ccccceeeEEEEecCCcCccccccc-cCcceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccC
Q 038150          154 LDEKVRHLMLIFSKAASLPISTLRV-KRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEK  232 (488)
Q Consensus       154 ~~~~vr~l~l~~~~~~~~~~~~~~~-~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~  232 (488)
                      ....++.+.+..+....++. +..+ ++|++|++++| .+.. .  ..+..+++|++|++++|.      +.        
T Consensus        17 ~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N-~l~~-~--~~l~~l~~L~~L~Ls~N~------l~--------   77 (176)
T 1a9n_A           17 NAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDN-EIRK-L--DGFPLLRRLKTLLVNNNR------IC--------   77 (176)
T ss_dssp             CTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSS-CCCE-E--CCCCCCSSCCEEECCSSC------CC--------
T ss_pred             CcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCC-CCCc-c--cccccCCCCCEEECCCCc------cc--------
Confidence            34455666666666655543 3333 36666666665 4443 2  235666666677776666      33        


Q ss_pred             ccCchhh-hhhccCcEeecCCCCCcccCch--hhccccccceeeccCCCCCCCCCCC----CCCcccccccCceeec
Q 038150          233 LVLPETL-CELYNLEKLDISDCFNLKELPE--GIGKLINVKHLLNRGTNSLRYMPVG----IGRLTGLRTLGEFHVS  302 (488)
Q Consensus       233 l~lp~~i-~~L~~L~~L~l~~~~~~~~lp~--~l~~L~~L~~L~l~~~~~~~~lp~~----i~~L~~L~~L~l~~~~  302 (488)
                       .+|..+ +.+++|++|++++|. +..+|.  .++.+++|++|++++|.+ ..+|..    ++.+++|++|++..|.
T Consensus        78 -~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~i-~~~~~~~~~~~~~l~~L~~Ld~~~n~  151 (176)
T 1a9n_A           78 -RIGEGLDQALPDLTELILTNNS-LVELGDLDPLASLKSLTYLCILRNPV-TNKKHYRLYVIYKVPQVRVLDFQKVK  151 (176)
T ss_dssp             -EECSCHHHHCTTCCEEECCSCC-CCCGGGGGGGGGCTTCCEEECCSSGG-GGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred             -ccCcchhhcCCCCCEEECCCCc-CCcchhhHhhhcCCCCCEEEecCCCC-CCcHhHHHHHHHHCCccceeCCCcCC
Confidence             333333 566666777776654 455555  566666666666666663 344543    5666666666666553

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.12  E-value=7.7e-11  Score=102.84  Aligned_cols=128  Identities=15%  Similarity=0.118  Sum_probs=90.0

Q ss_pred             ceeecCCCcccccccCCcccccccCccCchhhhhhccCcEeecCCCCCcccCchh--hccccccceeeccCCCCCCCCCC
Q 038150          208 RALDFGGSYHSTRLLTPEVPRNIEKLVLPETLCELYNLEKLDISDCFNLKELPEG--IGKLINVKHLLNRGTNSLRYMPV  285 (488)
Q Consensus       208 r~L~Ls~~~~~~~~~~~~lp~~i~~l~lp~~i~~L~~L~~L~l~~~~~~~~lp~~--l~~L~~L~~L~l~~~~~~~~lp~  285 (488)
                      ++++++++.      ++.+|.         .+..  +|++|++++|. +..+|..  ++.+++|++|++++|.+....|.
T Consensus        11 ~~l~~s~~~------l~~ip~---------~~~~--~l~~L~l~~n~-i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~   72 (192)
T 1w8a_A           11 TTVDCTGRG------LKEIPR---------DIPL--HTTELLLNDNE-LGRISSDGLFGRLPHLVKLELKRNQLTGIEPN   72 (192)
T ss_dssp             TEEECTTSC------CSSCCS---------CCCT--TCSEEECCSCC-CCSBCCSCSGGGCTTCCEEECCSSCCCCBCTT
T ss_pred             CEEEcCCCC------cCcCcc---------CCCC--CCCEEECCCCc-CCccCCccccccCCCCCEEECCCCCCCCcCHh
Confidence            678888888      664443         3322  78888998875 5666543  78888999999988886666677


Q ss_pred             CCCCcccccccCceeecCCCCCCCCcccCcccccCCCcccccccccccCCCChhhhhHhhcccCCCCCceeecccCchhh
Q 038150          286 GIGRLTGLRTLGEFHVSAGGGVDGRKACRLESLKNLEHLQVCGISRLGDVSDVGEAKRLELDKKKYLSSLTLWFDKEEEE  365 (488)
Q Consensus       286 ~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~  365 (488)
                      .++++++|++|++++|.+.+     .+                              +..+..+++|+.|++++|.+.+ 
T Consensus        73 ~~~~l~~L~~L~Ls~N~l~~-----~~------------------------------~~~~~~l~~L~~L~L~~N~l~~-  116 (192)
T 1w8a_A           73 AFEGASHIQELQLGENKIKE-----IS------------------------------NKMFLGLHQLKTLNLYDNQISC-  116 (192)
T ss_dssp             TTTTCTTCCEEECCSCCCCE-----EC------------------------------SSSSTTCTTCCEEECCSSCCCE-
T ss_pred             HcCCcccCCEEECCCCcCCc-----cC------------------------------HHHhcCCCCCCEEECCCCcCCe-
Confidence            78888888888888775543     00                              0224456778888888887642 


Q ss_pred             hhhhccccchHHHhhhCCCCCCCCEEEeccccCCC
Q 038150          366 EGERRKNEDNQLLLEALRPPLNLKELEIEYYRGNT  400 (488)
Q Consensus       366 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  400 (488)
                                 ..|..+..+++|+.|++++|.+..
T Consensus       117 -----------~~~~~~~~l~~L~~L~L~~N~l~c  140 (192)
T 1w8a_A          117 -----------VMPGSFEHLNSLTSLNLASNPFNC  140 (192)
T ss_dssp             -----------ECTTSSTTCTTCCEEECTTCCBCC
T ss_pred             -----------eCHHHhhcCCCCCEEEeCCCCccC
Confidence                       235667778888888888887764

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.06  E-value=1.1e-10  Score=100.29  Aligned_cols=40  Identities=15%  Similarity=0.142  Sum_probs=23.5

Q ss_pred             hCCCCCCCCEEEeccccCCCCCchH----HHhccCCcEEeecCCC
Q 038150          381 ALRPPLNLKELEIEYYRGNTVFPSW----MTSLTNLKSLDLSSCE  421 (488)
Q Consensus       381 ~~~~~~~L~~L~l~~~~~~~~lp~~----~~~l~~L~~L~l~~~~  421 (488)
                      .+..+++|+.|++++|.+.. +|..    +..+++|+.|++++|.
T Consensus       108 ~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n~  151 (176)
T 1a9n_A          108 PLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKVK  151 (176)
T ss_dssp             GGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTEECC
T ss_pred             hhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCCCcCC
Confidence            34455566666666666554 5553    5566666666666554

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.06  E-value=3.9e-12  Score=111.79  Aligned_cols=141  Identities=18%  Similarity=0.173  Sum_probs=100.0

Q ss_pred             HHHHHhcCCccceeecCCCcccccccCCcccccccCccCchhhhhhccCcEeecCCCCCcccCchhhccccccceeeccC
Q 038150          197 LEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVLPETLCELYNLEKLDISDCFNLKELPEGIGKLINVKHLLNRG  276 (488)
Q Consensus       197 ~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~lp~~i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~L~l~~  276 (488)
                      +|..+..+++|++|++++|.      +.         .+| .++.+++|++|++++|. +..+|..+..+++|++|++++
T Consensus        40 l~~~~~~l~~L~~L~ls~n~------l~---------~l~-~~~~l~~L~~L~l~~n~-l~~l~~~~~~~~~L~~L~L~~  102 (198)
T 1ds9_A           40 MDATLSTLKACKHLALSTNN------IE---------KIS-SLSGMENLRILSLGRNL-IKKIENLDAVADTLEELWISY  102 (198)
T ss_dssp             CHHHHHHTTTCSEEECSEEE------ES---------CCC-CHHHHTTCCEEEEEEEE-ECSCSSHHHHHHHCSEEEEEE
T ss_pred             hhHHHhcCCCCCEEECCCCC------Cc---------ccc-ccccCCCCCEEECCCCC-cccccchhhcCCcCCEEECcC
Confidence            44578999999999999998      44         556 78899999999999975 678898888889999999999


Q ss_pred             CCCCCCCCCCCCCcccccccCceeecCCCCCCCCcccCcccccCCCcccccccccccCCCChhhhhHhhcccCCCCCcee
Q 038150          277 TNSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGRKACRLESLKNLEHLQVCGISRLGDVSDVGEAKRLELDKKKYLSSLT  356 (488)
Q Consensus       277 ~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~  356 (488)
                      |.+ ..+| .++++++|++|++.+|.+..     .+ .                            ...+..+++|+.|+
T Consensus       103 N~l-~~l~-~~~~l~~L~~L~l~~N~i~~-----~~-~----------------------------~~~l~~l~~L~~L~  146 (198)
T 1ds9_A          103 NQI-ASLS-GIEKLVNLRVLYMSNNKITN-----WG-E----------------------------IDKLAALDKLEDLL  146 (198)
T ss_dssp             EEC-CCHH-HHHHHHHSSEEEESEEECCC-----HH-H----------------------------HHHHTTTTTCSEEE
T ss_pred             CcC-CcCC-ccccCCCCCEEECCCCcCCc-----hh-H----------------------------HHHHhcCCCCCEEE
Confidence            984 4455 68889999999998886553     00 0                            12455667788888


Q ss_pred             ecccCchhhhhhhccccchHHHhhhCCCCCCCCEEE
Q 038150          357 LWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKELE  392 (488)
Q Consensus       357 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~  392 (488)
                      +++|.+.+..+..  +.........+..+++|+.|+
T Consensus       147 l~~N~l~~~~~~~--~~~~~~~~~~~~~l~~L~~Ld  180 (198)
T 1ds9_A          147 LAGNPLYNDYKEN--NATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             ECSCHHHHHHHTT--TTHHHHHHHHHHHCSSCSEEC
T ss_pred             ecCCccccccccc--cchHHHHHHHHHhCCCcEEEC
Confidence            8888764332100  000011122356677888775

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.06  E-value=1.2e-10  Score=101.57  Aligned_cols=125  Identities=13%  Similarity=0.117  Sum_probs=86.7

Q ss_pred             eeEEEEecCCcCccccccccCcceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccCccCchhh
Q 038150          160 HLMLIFSKAASLPISTLRVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVLPETL  239 (488)
Q Consensus       160 ~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~lp~~i  239 (488)
                      .+.+..+....+|..+  .+++++|++.+| .+.  .+|..|..+++|++|+|++|.      +..+        .|..+
T Consensus        14 ~l~~~~~~l~~ip~~~--~~~l~~L~L~~n-~i~--~ip~~~~~l~~L~~L~Ls~N~------i~~i--------~~~~f   74 (193)
T 2wfh_A           14 VVRCSNKGLKVLPKGI--PRDVTELYLDGN-QFT--LVPKELSNYKHLTLIDLSNNR------ISTL--------SNQSF   74 (193)
T ss_dssp             EEECTTSCCSSCCSCC--CTTCCEEECCSS-CCC--SCCGGGGGCTTCCEEECCSSC------CCCC--------CTTTT
T ss_pred             EEEcCCCCCCcCCCCC--CCCCCEEECCCC-cCc--hhHHHhhcccCCCEEECCCCc------CCEe--------CHhHc
Confidence            4455555556676554  367888888887 454  344567888888888888888      4422        23457


Q ss_pred             hhhccCcEeecCCCCCcccCchhhccccccceeeccCCCCCCCCCC-CCCCcccccccCceeecCC
Q 038150          240 CELYNLEKLDISDCFNLKELPEGIGKLINVKHLLNRGTNSLRYMPV-GIGRLTGLRTLGEFHVSAG  304 (488)
Q Consensus       240 ~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~L~l~~~~~~~~lp~-~i~~L~~L~~L~l~~~~~~  304 (488)
                      .++++|++|++++|......|..+..+++|++|++++|.+. .+|. .+..+++|++|++.+|...
T Consensus        75 ~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A           75 SNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDIS-VVPEGAFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             TTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCC-BCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             cCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCC-eeChhhhhcCccccEEEeCCCCee
Confidence            78888888888887633333446788888888888888844 4554 4778888888888777543

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.05  E-value=4.2e-10  Score=98.11  Aligned_cols=127  Identities=13%  Similarity=0.019  Sum_probs=83.7

Q ss_pred             ceeecCCCcccccccCCcccccccCccCchhhhhhccCcEeecCCCCCcccCchhhccccccceeeccCCCCCCCCCCCC
Q 038150          208 RALDFGGSYHSTRLLTPEVPRNIEKLVLPETLCELYNLEKLDISDCFNLKELPEGIGKLINVKHLLNRGTNSLRYMPVGI  287 (488)
Q Consensus       208 r~L~Ls~~~~~~~~~~~~lp~~i~~l~lp~~i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~L~l~~~~~~~~lp~~i  287 (488)
                      ++++++++.      +..+|.         .+.  .+|++|++++|. +..+|..+..+++|++|++++|.+....+..+
T Consensus        13 ~~l~~~~~~------l~~ip~---------~~~--~~l~~L~L~~n~-i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f   74 (193)
T 2wfh_A           13 TVVRCSNKG------LKVLPK---------GIP--RDVTELYLDGNQ-FTLVPKELSNYKHLTLIDLSNNRISTLSNQSF   74 (193)
T ss_dssp             TEEECTTSC------CSSCCS---------CCC--TTCCEEECCSSC-CCSCCGGGGGCTTCCEEECCSSCCCCCCTTTT
T ss_pred             CEEEcCCCC------CCcCCC---------CCC--CCCCEEECCCCc-CchhHHHhhcccCCCEEECCCCcCCEeCHhHc
Confidence            577888877      554443         221  468888888865 66788888888888888888888554444567


Q ss_pred             CCcccccccCceeecCCCCCCCCcccCcccccCCCcccccccccccCCCChhhhhHhhcccCCCCCceeecccCchhhhh
Q 038150          288 GRLTGLRTLGEFHVSAGGGVDGRKACRLESLKNLEHLQVCGISRLGDVSDVGEAKRLELDKKKYLSSLTLWFDKEEEEEG  367 (488)
Q Consensus       288 ~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~  367 (488)
                      .++++|++|++++|.+..                             ++      +..+..+++|+.|++++|.+...  
T Consensus        75 ~~l~~L~~L~Ls~N~l~~-----------------------------i~------~~~f~~l~~L~~L~L~~N~l~~~--  117 (193)
T 2wfh_A           75 SNMTQLLTLILSYNRLRC-----------------------------IP------PRTFDGLKSLRLLSLHGNDISVV--  117 (193)
T ss_dssp             TTCTTCCEEECCSSCCCB-----------------------------CC------TTTTTTCTTCCEEECCSSCCCBC--
T ss_pred             cCCCCCCEEECCCCccCE-----------------------------eC------HHHhCCCCCCCEEECCCCCCCee--
Confidence            888888888887765443                             00      02344566677777777766321  


Q ss_pred             hhccccchHHHhhhCCCCCCCCEEEeccccCC
Q 038150          368 ERRKNEDNQLLLEALRPPLNLKELEIEYYRGN  399 (488)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  399 (488)
                                .+..+..+++|+.|++++|.+.
T Consensus       118 ----------~~~~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A          118 ----------PEGAFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             ----------CTTTTTTCTTCCEEECCSSCEE
T ss_pred             ----------ChhhhhcCccccEEEeCCCCee
Confidence                      1234566777778877776554

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.01  E-value=3.2e-10  Score=97.45  Aligned_cols=126  Identities=22%  Similarity=0.282  Sum_probs=91.9

Q ss_pred             eeeEEEEecCCcCccccccccCcceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccCccCch-
Q 038150          159 RHLMLIFSKAASLPISTLRVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVLPE-  237 (488)
Q Consensus       159 r~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~lp~-  237 (488)
                      +.+.+..+....+|..+  .++|++|++.+| .+.. ..+..|..+++|++|++++|.      +.         .+|. 
T Consensus        10 ~~l~~~~~~l~~~p~~~--~~~l~~L~l~~n-~l~~-~~~~~~~~l~~L~~L~l~~n~------l~---------~~~~~   70 (177)
T 2o6r_A           10 TEIRCNSKGLTSVPTGI--PSSATRLELESN-KLQS-LPHGVFDKLTQLTKLSLSQNQ------IQ---------SLPDG   70 (177)
T ss_dssp             TEEECCSSCCSSCCTTC--CTTCSEEECCSS-CCCC-CCTTTTTTCTTCSEEECCSSC------CC---------CCCTT
T ss_pred             CEEEecCCCCccCCCCC--CCCCcEEEeCCC-cccE-eCHHHhcCcccccEEECCCCc------ce---------EeChh
Confidence            34555555566676543  478999999987 4554 455557888999999999998      44         3333 


Q ss_pred             hhhhhccCcEeecCCCCCcccCchh-hccccccceeeccCCCCCCCCCCC-CCCcccccccCceeecCCC
Q 038150          238 TLCELYNLEKLDISDCFNLKELPEG-IGKLINVKHLLNRGTNSLRYMPVG-IGRLTGLRTLGEFHVSAGG  305 (488)
Q Consensus       238 ~i~~L~~L~~L~l~~~~~~~~lp~~-l~~L~~L~~L~l~~~~~~~~lp~~-i~~L~~L~~L~l~~~~~~~  305 (488)
                      .++.+++|++|++++|. +..+|.. ++.+++|++|++++|.+. .+|.. +.++++|++|++.+|.+..
T Consensus        71 ~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~~  138 (177)
T 2o6r_A           71 VFDKLTKLTILYLHENK-LQSLPNGVFDKLTQLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWDC  138 (177)
T ss_dssp             TTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             HccCCCccCEEECCCCC-ccccCHHHhhCCcccCEEECcCCcce-EeCHHHhcCCcccCEEEecCCCeec
Confidence            35788999999999976 5555554 688999999999998854 55554 5788999999988886654

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.95  E-value=1.3e-09  Score=103.70  Aligned_cols=252  Identities=15%  Similarity=0.119  Sum_probs=130.0

Q ss_pred             ccCcceecccccchhhhhhHHHHHhc-CCccceeecCCCcccc-cccCCcccc-cccCc---cCc-hhhhh--------h
Q 038150          178 VKRMRTLLINDHSLLNAAILEELFRE-LTSLRALDFGGSYHST-RLLTPEVPR-NIEKL---VLP-ETLCE--------L  242 (488)
Q Consensus       178 ~~~Lr~L~l~~~~~~~~~~~~~~~~~-l~~Lr~L~Ls~~~~~~-~~~~~~lp~-~i~~l---~lp-~~i~~--------L  242 (488)
                      +.+++.|.+.++  +....+.. +.. +++|++|||++|.+.. ....+.+|. .+..+   .+| ..+.+        +
T Consensus        24 ~~~l~~L~l~g~--i~~~~~~~-l~~~l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~  100 (329)
T 3sb4_A           24 ANSITHLTLTGK--LNAEDFRH-LRDEFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGK  100 (329)
T ss_dssp             HHHCSEEEEEEE--ECHHHHHH-HHHSCTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEEC
T ss_pred             hCceeEEEEecc--ccHHHHHH-HHHhhccCeEEecCcceeEEecCccccccccccccccccccCHHHhccccccccccc
Confidence            677888888774  22212332 444 7888899988887410 000001111 00000   222 23345        7


Q ss_pred             ccCcEeecCCCCCcccCch-hhccccccceeeccCCCCCCCCCCCCCCcccccccCceeecCCCCCCCCcccCcccccCC
Q 038150          243 YNLEKLDISDCFNLKELPE-GIGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGRKACRLESLKNL  321 (488)
Q Consensus       243 ~~L~~L~l~~~~~~~~lp~-~l~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L  321 (488)
                      .+|+.|++.. . +..++. .+..+++|+.|++..+.....-+..+..+.++..+.............-.....   ..+
T Consensus       101 ~~L~~l~L~~-~-i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f---~~~  175 (329)
T 3sb4_A          101 QTLEKVILSE-K-IKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAF---IEG  175 (329)
T ss_dssp             TTCCC-CBCT-T-CCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCE---EES
T ss_pred             CCCcEEECCc-c-ccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccc---ccc
Confidence            8888888877 3 555543 477888888888888764333334466666666555433110000000000001   111


Q ss_pred             Ccccc-cccccccCCC---------------------ChhhhhHhhcccCCCCCceeecccCchhhhhhhccccchHHHh
Q 038150          322 EHLQV-CGISRLGDVS---------------------DVGEAKRLELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLL  379 (488)
Q Consensus       322 ~~L~~-L~~~~~~~~~---------------------~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~  379 (488)
                      ..|+. +.+.....++                     -...........+++|+.++++.|.+...            -.
T Consensus       176 ~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I------------~~  243 (329)
T 3sb4_A          176 EPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTI------------PD  243 (329)
T ss_dssp             CCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEE------------CT
T ss_pred             cccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCccee------------cH
Confidence            11220 1111000000                     00000111112367888888888766322            12


Q ss_pred             hhCCCCCCCCEEEeccccCCCCCchHHHhccCCc-EEeecCCCCCCCCCC--CCCCCCcCeeeecccccceeeCccc
Q 038150          380 EALRPPLNLKELEIEYYRGNTVFPSWMTSLTNLK-SLDLSSCENCEQLPP--LGKLQSLENLHIWRMESVKRVGDEF  453 (488)
Q Consensus       380 ~~~~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~-~L~l~~~~~~~~~~~--l~~l~~L~~L~l~~~~~l~~~~~~~  453 (488)
                      ..+..+++|+.|.+.++ +...-+..+..+++|+ .+.+.+  ..+.++.  +..+++|+.|++..+. ++.++...
T Consensus       244 ~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~l~l~~n~-i~~I~~~a  316 (329)
T 3sb4_A          244 FTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLRYVLATGDK-ITTLGDEL  316 (329)
T ss_dssp             TTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT--TCCEECTTTTTTCTTEEEEEECSSC-CCEECTTT
T ss_pred             hhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc--cceEEchhhhhCCccCCEEEeCCCc-cCccchhh
Confidence            45777888888888876 4442344567788888 888877  3455543  7788888888886554 77776543

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=98.92  E-value=2.8e-09  Score=91.53  Aligned_cols=39  Identities=23%  Similarity=0.243  Sum_probs=18.4

Q ss_pred             CCCCCCCEEEeccccCCCCCchH-HHhccCCcEEeecCCCC
Q 038150          383 RPPLNLKELEIEYYRGNTVFPSW-MTSLTNLKSLDLSSCEN  422 (488)
Q Consensus       383 ~~~~~L~~L~l~~~~~~~~lp~~-~~~l~~L~~L~l~~~~~  422 (488)
                      ..+++|+.|++++|.+.. +|.. +..+++|++|++++|+.
T Consensus        97 ~~l~~L~~L~l~~N~l~~-~~~~~~~~l~~L~~L~l~~N~~  136 (177)
T 2o6r_A           97 DKLTQLKELALDTNQLKS-VPDGIFDRLTSLQKIWLHTNPW  136 (177)
T ss_dssp             TTCTTCCEEECCSSCCSC-CCTTTTTTCTTCCEEECCSSCB
T ss_pred             hCCcccCEEECcCCcceE-eCHHHhcCCcccCEEEecCCCe
Confidence            344455555555554444 3332 24455555555555543

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=98.80  E-value=1.7e-09  Score=92.46  Aligned_cols=64  Identities=22%  Similarity=0.329  Sum_probs=30.5

Q ss_pred             hhhhhccCcEeecCCCCCcccCchh-hccccccceeeccCCCCCCCCCCC-CCCcccccccCceeecC
Q 038150          238 TLCELYNLEKLDISDCFNLKELPEG-IGKLINVKHLLNRGTNSLRYMPVG-IGRLTGLRTLGEFHVSA  303 (488)
Q Consensus       238 ~i~~L~~L~~L~l~~~~~~~~lp~~-l~~L~~L~~L~l~~~~~~~~lp~~-i~~L~~L~~L~l~~~~~  303 (488)
                      .++++++|++|++++|. +..+|.. +.++++|++|++++|.+ ..+|.. ++++++|++|++.+|.+
T Consensus        52 ~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~L~~N~l-~~l~~~~~~~l~~L~~L~L~~N~~  117 (174)
T 2r9u_A           52 VFDHLVNLQQLYFNSNK-LTAIPTGVFDKLTQLTQLDLNDNHL-KSIPRGAFDNLKSLTHIYLYNNPW  117 (174)
T ss_dssp             TTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCSEEECCSSCB
T ss_pred             HhcCCcCCCEEECCCCC-CCccChhHhCCcchhhEEECCCCcc-ceeCHHHhccccCCCEEEeCCCCc
Confidence            44455555555555543 3444433 24555555555555542 233332 45555555555555443

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.79  E-value=9.7e-10  Score=106.05  Aligned_cols=70  Identities=21%  Similarity=0.216  Sum_probs=33.7

Q ss_pred             hcccCCCCCceeecccCchhhhhhhccccchHHHhhhCCCCCCCCEEEeccccCCCC----CchHHHhccCCcEEeecCC
Q 038150          345 ELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKELEIEYYRGNTV----FPSWMTSLTNLKSLDLSSC  420 (488)
Q Consensus       345 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~----lp~~~~~l~~L~~L~l~~~  420 (488)
                      .+..+++|+.|++++|.+....        ...+...+..+++|+.|+|++|.+...    ++..+...++|++|+|++|
T Consensus       178 ~L~~~~~L~~L~Ls~N~l~~~g--------~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N  249 (372)
T 3un9_A          178 GLAGNTSVTHLSLLHTGLGDEG--------LELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFN  249 (372)
T ss_dssp             HHHTCSSCCEEECTTSSCHHHH--------HHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTS
T ss_pred             HHhcCCCcCEEeCCCCCCCcHH--------HHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCC
Confidence            3344455555555555554221        133344444455566666665554421    2222334455666666665


Q ss_pred             CC
Q 038150          421 EN  422 (488)
Q Consensus       421 ~~  422 (488)
                      .+
T Consensus       250 ~i  251 (372)
T 3un9_A          250 EL  251 (372)
T ss_dssp             SC
T ss_pred             CC
Confidence            53

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.77  E-value=1.7e-09  Score=104.32  Aligned_cols=52  Identities=17%  Similarity=0.243  Sum_probs=38.4

Q ss_pred             hhHhhcccCCCCCceeecccCchhhhhhhccccchHHHhhhCCCCCCCCEEEeccccCCC
Q 038150          341 AKRLELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKELEIEYYRGNT  400 (488)
Q Consensus       341 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  400 (488)
                      .+...+...++|+.|++++|.+.....        ..+...+...++|+.|+|++|.+..
T Consensus       202 ~L~~~L~~~~~L~~L~Ls~N~i~~~g~--------~~l~~~L~~~~~L~~L~Ls~N~i~~  253 (372)
T 3un9_A          202 LLAAQLDRNRQLQELNVAYNGAGDTAA--------LALARAAREHPSLELLHLYFNELSS  253 (372)
T ss_dssp             HHHHHGGGCSCCCEEECCSSCCCHHHH--------HHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred             HHHHHHhcCCCcCeEECCCCCCCHHHH--------HHHHHHHHhCCCCCEEeccCCCCCH
Confidence            345667778889999999998864321        4555666677889999999988765

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.72  E-value=1.8e-08  Score=95.78  Aligned_cols=64  Identities=19%  Similarity=0.150  Sum_probs=52.3

Q ss_pred             CCCCCEEEeccccCCCCCc-hHHHhccCCcEEeecCCCCCCCCCC--CCCCCCcC-eeeecccccceeeCccc
Q 038150          385 PLNLKELEIEYYRGNTVFP-SWMTSLTNLKSLDLSSCENCEQLPP--LGKLQSLE-NLHIWRMESVKRVGDEF  453 (488)
Q Consensus       385 ~~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~~~~~--l~~l~~L~-~L~l~~~~~l~~~~~~~  453 (488)
                      +++|+.|+|++|.+.. +| ..+..+++|+.|++.++  ...++.  +..+++|+ .+.+.+  .++.++...
T Consensus       225 ~~~L~~l~L~~n~i~~-I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~a  292 (329)
T 3sb4_A          225 MPNLVSLDISKTNATT-IPDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGA  292 (329)
T ss_dssp             CTTCCEEECTTBCCCE-ECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT--TCCEECTTT
T ss_pred             cCCCeEEECCCCCcce-ecHhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc--cceEEchhh
Confidence            6899999999988887 54 45778999999999887  566664  88899999 999977  578887654

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=98.69  E-value=2.6e-08  Score=85.05  Aligned_cols=82  Identities=20%  Similarity=0.182  Sum_probs=53.6

Q ss_pred             CCCCceeecccCchhhhhhhccccchHHHhhhCCCCCCCCEEEeccccCCCCCchH-HHhccCCcEEeecCCCCCCCCCC
Q 038150          350 KYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKELEIEYYRGNTVFPSW-MTSLTNLKSLDLSSCENCEQLPP  428 (488)
Q Consensus       350 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~  428 (488)
                      ++|+.|++++|.+.+            ..+..+..+++|+.|+|++|.+.. +|.. +..+++|++|++++|.+....+.
T Consensus        33 ~~L~~L~Ls~N~l~~------------~~~~~~~~l~~L~~L~Ls~N~l~~-i~~~~~~~l~~L~~L~L~~N~l~~l~~~   99 (174)
T 2r9u_A           33 TDKQRLWLNNNQITK------------LEPGVFDHLVNLQQLYFNSNKLTA-IPTGVFDKLTQLTQLDLNDNHLKSIPRG   99 (174)
T ss_dssp             TTCSEEECCSSCCCC------------CCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred             CCCcEEEeCCCCccc------------cCHHHhcCCcCCCEEECCCCCCCc-cChhHhCCcchhhEEECCCCccceeCHH
Confidence            667777777776642            224556667777777777777766 5443 46677777777777765543333


Q ss_pred             -CCCCCCcCeeeecccc
Q 038150          429 -LGKLQSLENLHIWRME  444 (488)
Q Consensus       429 -l~~l~~L~~L~l~~~~  444 (488)
                       ++.+++|++|++++|+
T Consensus       100 ~~~~l~~L~~L~L~~N~  116 (174)
T 2r9u_A          100 AFDNLKSLTHIYLYNNP  116 (174)
T ss_dssp             TTTTCTTCSEEECCSSC
T ss_pred             HhccccCCCEEEeCCCC
Confidence             6677777777777765

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=98.68  E-value=2.8e-08  Score=84.54  Aligned_cols=83  Identities=16%  Similarity=0.145  Sum_probs=49.9

Q ss_pred             CCCCceeecccCchhhhhhhccccchHHHhhhCCCCCCCCEEEeccccCCCCCchHHHhccCCcEEeecCCCCCCCCCC-
Q 038150          350 KYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKELEIEYYRGNTVFPSWMTSLTNLKSLDLSSCENCEQLPP-  428 (488)
Q Consensus       350 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~-  428 (488)
                      ++|+.|++++|.+..            ..+..+..+++|+.|+|++|.+....|..+..+++|++|++++|.+....+. 
T Consensus        30 ~~l~~L~L~~N~i~~------------~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~   97 (170)
T 3g39_A           30 TTTQVLYLYDNQITK------------LEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGA   97 (170)
T ss_dssp             TTCSEEECCSSCCCC------------CCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred             CCCcEEEcCCCcCCc------------cChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHH
Confidence            566667777666532            1244566666777777777666652233345666777777776664443333 


Q ss_pred             CCCCCCcCeeeecccc
Q 038150          429 LGKLQSLENLHIWRME  444 (488)
Q Consensus       429 l~~l~~L~~L~l~~~~  444 (488)
                      ++.+++|++|++++|+
T Consensus        98 ~~~l~~L~~L~L~~N~  113 (170)
T 3g39_A           98 FDNLKSLTHIWLLNNP  113 (170)
T ss_dssp             TTTCTTCCEEECCSSC
T ss_pred             hcCCCCCCEEEeCCCC
Confidence            6666777777776665

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=98.68  E-value=1.2e-08  Score=86.81  Aligned_cols=104  Identities=18%  Similarity=0.192  Sum_probs=64.0

Q ss_pred             cceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccCccCchhhhhhccCcEeecCCCCCcccCc
Q 038150          181 MRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVLPETLCELYNLEKLDISDCFNLKELP  260 (488)
Q Consensus       181 Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~lp~~i~~L~~L~~L~l~~~~~~~~lp  260 (488)
                      .++++++++ .+..  +|..+  .+.|++|+|++|.      +..        ..|..++.+++|++|++++|. +..+|
T Consensus        11 ~~~l~~s~n-~l~~--ip~~~--~~~l~~L~L~~N~------i~~--------~~~~~~~~l~~L~~L~Ls~N~-l~~l~   70 (170)
T 3g39_A           11 GTTVDCSGK-SLAS--VPTGI--PTTTQVLYLYDNQ------ITK--------LEPGVFDRLTQLTRLDLDNNQ-LTVLP   70 (170)
T ss_dssp             TTEEECTTS-CCSS--CCSCC--CTTCSEEECCSSC------CCC--------CCTTTTTTCTTCSEEECCSSC-CCCCC
T ss_pred             CCEEEeCCC-CcCc--cCccC--CCCCcEEEcCCCc------CCc--------cChhhhcCcccCCEEECCCCC-cCccC
Confidence            356666665 3432  33222  3667777777777      331        224456677777777777765 55555


Q ss_pred             hh-hccccccceeeccCCCCCCCCCC-CCCCcccccccCceeecCCC
Q 038150          261 EG-IGKLINVKHLLNRGTNSLRYMPV-GIGRLTGLRTLGEFHVSAGG  305 (488)
Q Consensus       261 ~~-l~~L~~L~~L~l~~~~~~~~lp~-~i~~L~~L~~L~l~~~~~~~  305 (488)
                      .. +..+++|++|++++|.+. .+|. .++++++|++|++.+|.+..
T Consensus        71 ~~~f~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~~~c  116 (170)
T 3g39_A           71 AGVFDKLTQLTQLSLNDNQLK-SIPRGAFDNLKSLTHIWLLNNPWDC  116 (170)
T ss_dssp             TTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred             hhhccCCCCCCEEECCCCccC-EeCHHHhcCCCCCCEEEeCCCCCCC
Confidence            44 467777777777777743 3443 47777777777777776543

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.50  E-value=1.4e-07  Score=90.22  Aligned_cols=66  Identities=11%  Similarity=0.005  Sum_probs=35.2

Q ss_pred             cCCCCCceeecccCchhhhhhhccccchHHHhhhCCCCCCCCEEEeccccCCCC----CchHHHhccCCcEEeecCCCC
Q 038150          348 KKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKELEIEYYRGNTV----FPSWMTSLTNLKSLDLSSCEN  422 (488)
Q Consensus       348 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~----lp~~~~~l~~L~~L~l~~~~~  422 (488)
                      .+++|+.|.+.+|.+.....        ..+ .....+++|+.|+|+.|.+...    ++..+..+++|+.|++++|.+
T Consensus       250 ~~p~Lr~L~L~~~~i~~~~~--------~~l-a~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i  319 (362)
T 2ra8_A          250 RFPNLKWLGIVDAEEQNVVV--------EMF-LESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYL  319 (362)
T ss_dssp             TCTTCCEEEEESCTTHHHHH--------HHH-HHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBC
T ss_pred             CCCCcCEEeCCCCCCchHHH--------HHH-HhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcC
Confidence            35667777776666542210        111 1123456777777766655431    222334567777777776653

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.46  E-value=6.6e-08  Score=92.47  Aligned_cols=200  Identities=20%  Similarity=0.149  Sum_probs=117.2

Q ss_pred             HHHHhcCCccceeecCCCcccccccCCcccc-cccCccCchhhhhhccCcEeecCCCCCcccCchhhccccccceeeccC
Q 038150          198 EELFRELTSLRALDFGGSYHSTRLLTPEVPR-NIEKLVLPETLCELYNLEKLDISDCFNLKELPEGIGKLINVKHLLNRG  276 (488)
Q Consensus       198 ~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~-~i~~l~lp~~i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~L~l~~  276 (488)
                      ...+.++++|+.|.+.....      ..... .+..-.++..+..+++|+.|++++|... .+|. + .+++|++|.+..
T Consensus       132 ~~s~~~l~~L~~L~l~~~~~------e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~  202 (362)
T 2ra8_A          132 VENKEKFAHFEGLFWGDIDF------EEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIIS  202 (362)
T ss_dssp             HTTHHHHTTCSEEEECCCCT------TTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEEC
T ss_pred             HHhhhhcchhhheeecCcch------hhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEec
Confidence            33456788999998865431      10000 0000035566778899999999987432 4444 4 388999999988


Q ss_pred             CCCCCCCCCCC--CCcccccccCceee--cCCCCCCCCcccCccc-c--cCCCcccccccccccCCCChhhhhHhhcccC
Q 038150          277 TNSLRYMPVGI--GRLTGLRTLGEFHV--SAGGGVDGRKACRLES-L--KNLEHLQVCGISRLGDVSDVGEAKRLELDKK  349 (488)
Q Consensus       277 ~~~~~~lp~~i--~~L~~L~~L~l~~~--~~~~~~~~~~~~~~~~-l--~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~l  349 (488)
                      |.+.......+  ..+++|++|+++.+  ...+..   ....+.. +  ..+++|+.|.+..+........++ .....+
T Consensus       203 ~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~---~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~l-a~a~~~  278 (362)
T 2ra8_A          203 GGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDG---DMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMF-LESDIL  278 (362)
T ss_dssp             SBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCS---CGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHH-HHCSSG
T ss_pred             CCCChHHHHHHHHccCCCCcEEEEeccccccccch---hHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHH-HhCccC
Confidence            76432221223  37899999988532  111100   0111111 1  347888888886544321111222 222457


Q ss_pred             CCCCceeecccCchhhhhhhccccchHHHhhhCCCCCCCCEEEeccccCCCCCchHHHhccC--CcEEeecCCC
Q 038150          350 KYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKELEIEYYRGNTVFPSWMTSLTN--LKSLDLSSCE  421 (488)
Q Consensus       350 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~lp~~~~~l~~--L~~L~l~~~~  421 (488)
                      ++|+.|+++.|.+....        ...++..+..+++|+.|+|++|.+..   ..+..+..  ...++++.+.
T Consensus       279 ~~L~~LdLs~n~L~d~G--------~~~L~~~L~~l~~L~~L~L~~n~i~d---~~~~~l~~alg~~~~~~~~~  341 (362)
T 2ra8_A          279 PQLETMDISAGVLTDEG--------ARLLLDHVDKIKHLKFINMKYNYLSD---EMKKELQKSLPMKIDVSDSQ  341 (362)
T ss_dssp             GGCSEEECCSSCCBHHH--------HHHHHTTHHHHTTCSEEECCSBBCCH---HHHHHHHHHCCSEEECCSBC
T ss_pred             CCCCEEECCCCCCChHH--------HHHHHhhcccCCcceEEECCCCcCCH---HHHHHHHHHcCCEEEecCCc
Confidence            89999999999876432        14455556678899999999997664   22333332  3567777665

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.37  E-value=1.8e-07  Score=89.47  Aligned_cols=95  Identities=21%  Similarity=0.160  Sum_probs=55.0

Q ss_pred             cCCcCccccccccCcceecccc-cchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccCccCchhhhhhccC
Q 038150          167 KAASLPISTLRVKRMRTLLIND-HSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVLPETLCELYNL  245 (488)
Q Consensus       167 ~~~~~~~~~~~~~~Lr~L~l~~-~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~lp~~i~~L~~L  245 (488)
                      ....+|. +..+.+|++|++++ | .+.. ..+..|..+++|++|+|++|.+      ..        ..|..+++|++|
T Consensus        20 ~l~~ip~-l~~~~~L~~L~l~~~n-~l~~-~~~~~~~~l~~L~~L~l~~N~l------~~--------~~~~~~~~l~~L   82 (347)
T 2ifg_A           20 ALDSLHH-LPGAENLTELYIENQQ-HLQH-LELRDLRGLGELRNLTIVKSGL------RF--------VAPDAFHFTPRL   82 (347)
T ss_dssp             CCTTTTT-SCSCSCCSEEECCSCS-SCCE-ECGGGSCSCCCCSEEECCSSCC------CE--------ECTTGGGSCSCC
T ss_pred             CCCccCC-CCCCCCeeEEEccCCC-CCCC-cChhHhccccCCCEEECCCCcc------ce--------eCHHHhcCCcCC
Confidence            3455666 66666677777765 4 4443 4444566677777777777763      31        223345666677


Q ss_pred             cEeecCCCCCcccCchhhccccccceeeccCCCC
Q 038150          246 EKLDISDCFNLKELPEGIGKLINVKHLLNRGTNS  279 (488)
Q Consensus       246 ~~L~l~~~~~~~~lp~~l~~L~~L~~L~l~~~~~  279 (488)
                      ++|+|++|. +..+|..+.....|++|++.+|.+
T Consensus        83 ~~L~l~~N~-l~~~~~~~~~~~~L~~l~l~~N~~  115 (347)
T 2ifg_A           83 SRLNLSFNA-LESLSWKTVQGLSLQELVLSGNPL  115 (347)
T ss_dssp             CEEECCSSC-CSCCCSTTTCSCCCCEEECCSSCC
T ss_pred             CEEeCCCCc-cceeCHHHcccCCceEEEeeCCCc
Confidence            777777754 455555443333367777766653

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.36  E-value=3e-07  Score=87.93  Aligned_cols=104  Identities=14%  Similarity=-0.029  Sum_probs=78.7

Q ss_pred             eecccccchhhhhhHHHHHhcCCccceeecCC-CcccccccCCcccccccCccCc-hhhhhhccCcEeecCCCCCcccCc
Q 038150          183 TLLINDHSLLNAAILEELFRELTSLRALDFGG-SYHSTRLLTPEVPRNIEKLVLP-ETLCELYNLEKLDISDCFNLKELP  260 (488)
Q Consensus       183 ~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~-~~~~~~~~~~~lp~~i~~l~lp-~~i~~L~~L~~L~l~~~~~~~~lp  260 (488)
                      .+++.+++.+.  .+|. +..+.+|++|+|++ |.      +.         .+| ..++.|.+|++|+|++|......|
T Consensus        12 ~v~~~~~n~l~--~ip~-l~~~~~L~~L~l~~~n~------l~---------~~~~~~~~~l~~L~~L~l~~N~l~~~~~   73 (347)
T 2ifg_A           12 GLRCTRDGALD--SLHH-LPGAENLTELYIENQQH------LQ---------HLELRDLRGLGELRNLTIVKSGLRFVAP   73 (347)
T ss_dssp             CEECCSSCCCT--TTTT-SCSCSCCSEEECCSCSS------CC---------EECGGGSCSCCCCSEEECCSSCCCEECT
T ss_pred             EEEcCCCCCCC--ccCC-CCCCCCeeEEEccCCCC------CC---------CcChhHhccccCCCEEECCCCccceeCH
Confidence            45666643565  4677 89999999999996 87      55         333 568899999999999987444455


Q ss_pred             hhhccccccceeeccCCCCCCCCCCCCCCcccccccCceeecCCC
Q 038150          261 EGIGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFHVSAGG  305 (488)
Q Consensus       261 ~~l~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~  305 (488)
                      ..+++|++|++|++++|.+ ..+|..+....+|+.|++.+|.+..
T Consensus        74 ~~~~~l~~L~~L~l~~N~l-~~~~~~~~~~~~L~~l~l~~N~~~c  117 (347)
T 2ifg_A           74 DAFHFTPRLSRLNLSFNAL-ESLSWKTVQGLSLQELVLSGNPLHC  117 (347)
T ss_dssp             TGGGSCSCCCEEECCSSCC-SCCCSTTTCSCCCCEEECCSSCCCC
T ss_pred             HHhcCCcCCCEEeCCCCcc-ceeCHHHcccCCceEEEeeCCCccC
Confidence            6789999999999999995 5666554333349999998887654

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.20  E-value=1.6e-07  Score=79.08  Aligned_cols=89  Identities=11%  Similarity=0.138  Sum_probs=62.0

Q ss_pred             CCCCCceeecccCchhhhhhhccccchHHHhhhCCCCCCCCEEEeccccCCC-CCchHHHhc----cCCcEEeecCCCCC
Q 038150          349 KKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKELEIEYYRGNT-VFPSWMTSL----TNLKSLDLSSCENC  423 (488)
Q Consensus       349 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~lp~~~~~l----~~L~~L~l~~~~~~  423 (488)
                      -.+|+.|+++++.++            ..-...+..+++|++|+|++|...+ .--..+..+    ++|++|+|++|...
T Consensus        60 ~~~L~~LDLs~~~It------------d~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~I  127 (176)
T 3e4g_A           60 KYKIQAIDATDSCIM------------SIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNV  127 (176)
T ss_dssp             CCCEEEEEEESCCCC------------GGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTC
T ss_pred             CceEeEEeCcCCCcc------------HHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcC
Confidence            446888999988765            2334556788899999999886432 112233332    46889999998866


Q ss_pred             CC--CCCCCCCCCcCeeeecccccceee
Q 038150          424 EQ--LPPLGKLQSLENLHIWRMESVKRV  449 (488)
Q Consensus       424 ~~--~~~l~~l~~L~~L~l~~~~~l~~~  449 (488)
                      ++  +..+..+++|++|++++|+.++..
T Consensus       128 TD~Gl~~L~~~~~L~~L~L~~c~~Itd~  155 (176)
T 3e4g_A          128 TDKGIIALHHFRNLKYLFLSDLPGVKEK  155 (176)
T ss_dssp             CHHHHHHGGGCTTCCEEEEESCTTCCCH
T ss_pred             CHHHHHHHhcCCCCCEEECCCCCCCCch
Confidence            65  333677889999999999877664

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.20  E-value=3.8e-06  Score=81.64  Aligned_cols=226  Identities=12%  Similarity=0.142  Sum_probs=125.0

Q ss_pred             cccccCcceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccCccCchhhhhhccCcEeecCCCC
Q 038150          175 TLRVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVLPETLCELYNLEKLDISDCF  254 (488)
Q Consensus       175 ~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~lp~~i~~L~~L~~L~l~~~~  254 (488)
                      |.++ +|+.+.+..+  +.. .....|.++ .|+.+.+.. .      +..++.        ..+.++.+|+.+++..|.
T Consensus       132 F~~~-~L~~i~l~~~--i~~-I~~~aF~~~-~L~~i~lp~-~------l~~I~~--------~aF~~c~~L~~l~l~~n~  191 (401)
T 4fdw_A          132 FRNS-QIAKVVLNEG--LKS-IGDMAFFNS-TVQEIVFPS-T------LEQLKE--------DIFYYCYNLKKADLSKTK  191 (401)
T ss_dssp             TTTC-CCSEEECCTT--CCE-ECTTTTTTC-CCCEEECCT-T------CCEECS--------STTTTCTTCCEEECTTSC
T ss_pred             cccC-CccEEEeCCC--ccE-ECHHhcCCC-CceEEEeCC-C------ccEehH--------HHhhCcccCCeeecCCCc
Confidence            3443 6777777654  332 223345553 577777765 2      332221        346677888888887743


Q ss_pred             CcccCchhhccccccceeeccCCCCCCCCC-CCCCCcccccccCceeecCCCCCCCCcccCcccccCCCcccccccc-cc
Q 038150          255 NLKELPEGIGKLINVKHLLNRGTNSLRYMP-VGIGRLTGLRTLGEFHVSAGGGVDGRKACRLESLKNLEHLQVCGIS-RL  332 (488)
Q Consensus       255 ~~~~lp~~l~~L~~L~~L~l~~~~~~~~lp-~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~-~~  332 (488)
                       +..+|...-...+|+.+.+..+  ...++ ..+.++++|+.+.+..+ ...     .+.  ..+.+ .+|+.+.+. .+
T Consensus       192 -l~~I~~~aF~~~~L~~l~lp~~--l~~I~~~aF~~~~~L~~l~l~~~-l~~-----I~~--~aF~~-~~L~~i~lp~~i  259 (401)
T 4fdw_A          192 -ITKLPASTFVYAGIEEVLLPVT--LKEIGSQAFLKTSQLKTIEIPEN-VST-----IGQ--EAFRE-SGITTVKLPNGV  259 (401)
T ss_dssp             -CSEECTTTTTTCCCSEEECCTT--CCEECTTTTTTCTTCCCEECCTT-CCE-----ECT--TTTTT-CCCSEEEEETTC
T ss_pred             -ceEechhhEeecccCEEEeCCc--hheehhhHhhCCCCCCEEecCCC-ccC-----ccc--ccccc-CCccEEEeCCCc
Confidence             5666655444577888888754  34444 34677778887776542 110     000  11111 234444431 12


Q ss_pred             cCCCChhhhhHhhcccCCCCCceeecccCchhhhhhhccccchHHHhhhCCCCCCCCEEEeccccCCCCCchHHHhccCC
Q 038150          333 GDVSDVGEAKRLELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKELEIEYYRGNTVFPSWMTSLTNL  412 (488)
Q Consensus       333 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L  412 (488)
                      ..++.      ..+.++++|+.+.+..+......       ...--...+..+++|+.+.|... +...-...+..+++|
T Consensus       260 ~~I~~------~aF~~c~~L~~l~l~~~~~~~~~-------~~~I~~~aF~~c~~L~~l~l~~~-i~~I~~~aF~~c~~L  325 (401)
T 4fdw_A          260 TNIAS------RAFYYCPELAEVTTYGSTFNDDP-------EAMIHPYCLEGCPKLARFEIPES-IRILGQGLLGGNRKV  325 (401)
T ss_dssp             CEECT------TTTTTCTTCCEEEEESSCCCCCT-------TCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCCSC
T ss_pred             cEECh------hHhhCCCCCCEEEeCCccccCCc-------ccEECHHHhhCCccCCeEEeCCc-eEEEhhhhhcCCCCc
Confidence            22221      45677888888888776542000       00011245677888888888743 333123456677888


Q ss_pred             cEEeecCCCCCCCCCC--CCCCCCcCeeeecccccceeeC
Q 038150          413 KSLDLSSCENCEQLPP--LGKLQSLENLHIWRMESVKRVG  450 (488)
Q Consensus       413 ~~L~l~~~~~~~~~~~--l~~l~~L~~L~l~~~~~l~~~~  450 (488)
                      +.+.|..+  +..+..  +..+ +|+.+.+.++. +..++
T Consensus       326 ~~l~lp~~--l~~I~~~aF~~~-~L~~l~l~~n~-~~~l~  361 (401)
T 4fdw_A          326 TQLTIPAN--VTQINFSAFNNT-GIKEVKVEGTT-PPQVF  361 (401)
T ss_dssp             CEEEECTT--CCEECTTSSSSS-CCCEEEECCSS-CCBCC
T ss_pred             cEEEECcc--ccEEcHHhCCCC-CCCEEEEcCCC-Ccccc
Confidence            88888654  444443  6667 88888887764 33443

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.12  E-value=4e-07  Score=76.62  Aligned_cols=87  Identities=18%  Similarity=0.104  Sum_probs=62.9

Q ss_pred             cccccccccccCCCChhhhhHhhcccCCCCCceeecccC-chhhhhhhccccchHHHhhhCCCC----CCCCEEEecccc
Q 038150          323 HLQVCGISRLGDVSDVGEAKRLELDKKKYLSSLTLWFDK-EEEEEGERRKNEDNQLLLEALRPP----LNLKELEIEYYR  397 (488)
Q Consensus       323 ~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~----~~L~~L~l~~~~  397 (488)
                      +|+.|+++.+. +.+   .-...+.++++|+.|++++|. ++            ......+..+    ++|++|+|++|.
T Consensus        62 ~L~~LDLs~~~-Itd---~GL~~L~~~~~L~~L~L~~C~~It------------D~gL~~L~~~~~~~~~L~~L~Ls~C~  125 (176)
T 3e4g_A           62 KIQAIDATDSC-IMS---IGFDHMEGLQYVEKIRLCKCHYIE------------DGCLERLSQLENLQKSMLEMEIISCG  125 (176)
T ss_dssp             CEEEEEEESCC-CCG---GGGGGGTTCSCCCEEEEESCTTCC------------HHHHHHHHTCHHHHHHCCEEEEESCT
T ss_pred             eEeEEeCcCCC-ccH---HHHHHhcCCCCCCEEEeCCCCccC------------HHHHHHHHhcccccCCCCEEEcCCCC
Confidence            57888888876 443   334567899999999999996 43            3334445443    479999999996


Q ss_pred             C-CCCCchHHHhccCCcEEeecCCCCCCC
Q 038150          398 G-NTVFPSWMTSLTNLKSLDLSSCENCEQ  425 (488)
Q Consensus       398 ~-~~~lp~~~~~l~~L~~L~l~~~~~~~~  425 (488)
                      . +..--..+..+++|++|+|++|+..++
T Consensus       126 ~ITD~Gl~~L~~~~~L~~L~L~~c~~Itd  154 (176)
T 3e4g_A          126 NVTDKGIIALHHFRNLKYLFLSDLPGVKE  154 (176)
T ss_dssp             TCCHHHHHHGGGCTTCCEEEEESCTTCCC
T ss_pred             cCCHHHHHHHhcCCCCCEEECCCCCCCCc
Confidence            4 331233456889999999999987765

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.01  E-value=2.7e-05  Score=75.65  Aligned_cols=222  Identities=12%  Similarity=0.127  Sum_probs=137.0

Q ss_pred             ccCcceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccCccCchhhhhhccCcEeecCCCCCcc
Q 038150          178 VKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVLPETLCELYNLEKLDISDCFNLK  257 (488)
Q Consensus       178 ~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~lp~~i~~L~~L~~L~l~~~~~~~  257 (488)
                      +..+..+.+-..  +.. .....|.++ +|+.+.+..+       +..++.        ..+.+ .+|+.+.+.. + +.
T Consensus       112 ~~~l~~i~ip~~--i~~-I~~~aF~~~-~L~~i~l~~~-------i~~I~~--------~aF~~-~~L~~i~lp~-~-l~  169 (401)
T 4fdw_A          112 LKGYNEIILPNS--VKS-IPKDAFRNS-QIAKVVLNEG-------LKSIGD--------MAFFN-STVQEIVFPS-T-LE  169 (401)
T ss_dssp             CSSCSEEECCTT--CCE-ECTTTTTTC-CCSEEECCTT-------CCEECT--------TTTTT-CCCCEEECCT-T-CC
T ss_pred             cCCccEEEECCc--cCE-ehHhhcccC-CccEEEeCCC-------ccEECH--------HhcCC-CCceEEEeCC-C-cc
Confidence            466666666553  332 333446664 6888888665       232221        22334 3688998886 3 44


Q ss_pred             cCc-hhhccccccceeeccCCCCCCCCCCCCCCcccccccCceeecCCCCCCCCcccCcccccCCCcccccccc-cccCC
Q 038150          258 ELP-EGIGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGRKACRLESLKNLEHLQVCGIS-RLGDV  335 (488)
Q Consensus       258 ~lp-~~l~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~-~~~~~  335 (488)
                      .++ ..+..+.+|+.+++..|. ...++...-...+|+.+.+..+ ...       -.-..+.++.+|+.+.+. .+..+
T Consensus       170 ~I~~~aF~~c~~L~~l~l~~n~-l~~I~~~aF~~~~L~~l~lp~~-l~~-------I~~~aF~~~~~L~~l~l~~~l~~I  240 (401)
T 4fdw_A          170 QLKEDIFYYCYNLKKADLSKTK-ITKLPASTFVYAGIEEVLLPVT-LKE-------IGSQAFLKTSQLKTIEIPENVSTI  240 (401)
T ss_dssp             EECSSTTTTCTTCCEEECTTSC-CSEECTTTTTTCCCSEEECCTT-CCE-------ECTTTTTTCTTCCCEECCTTCCEE
T ss_pred             EehHHHhhCcccCCeeecCCCc-ceEechhhEeecccCEEEeCCc-hhe-------ehhhHhhCCCCCCEEecCCCccCc
Confidence            444 467889999999999877 5566655434678888876432 111       011234455666666553 22222


Q ss_pred             CChhhhhHhhcccCCCCCceeecccCchhhhhhhccccchHHHhhhCCCCCCCCEEEeccccCC-----CCCchHHHhcc
Q 038150          336 SDVGEAKRLELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKELEIEYYRGN-----TVFPSWMTSLT  410 (488)
Q Consensus       336 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-----~~lp~~~~~l~  410 (488)
                      ..      ..+.+ .+|+.+.+..+ +.            .--...+..+++|+.+.+.++...     ..-+..+..++
T Consensus       241 ~~------~aF~~-~~L~~i~lp~~-i~------------~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~  300 (401)
T 4fdw_A          241 GQ------EAFRE-SGITTVKLPNG-VT------------NIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCP  300 (401)
T ss_dssp             CT------TTTTT-CCCSEEEEETT-CC------------EECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCT
T ss_pred             cc------ccccc-CCccEEEeCCC-cc------------EEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCc
Confidence            21      23334 67888888443 21            111356788999999999887654     21345677899


Q ss_pred             CCcEEeecCCCCCCCCCC--CCCCCCcCeeeecccccceeeCcccc
Q 038150          411 NLKSLDLSSCENCEQLPP--LGKLQSLENLHIWRMESVKRVGDEFL  454 (488)
Q Consensus       411 ~L~~L~l~~~~~~~~~~~--l~~l~~L~~L~l~~~~~l~~~~~~~~  454 (488)
                      +|+.+.+.++  ...++.  +..+++|+.+.|..+  ++.++...+
T Consensus       301 ~L~~l~l~~~--i~~I~~~aF~~c~~L~~l~lp~~--l~~I~~~aF  342 (401)
T 4fdw_A          301 KLARFEIPES--IRILGQGLLGGNRKVTQLTIPAN--VTQINFSAF  342 (401)
T ss_dssp             TCCEECCCTT--CCEECTTTTTTCCSCCEEEECTT--CCEECTTSS
T ss_pred             cCCeEEeCCc--eEEEhhhhhcCCCCccEEEECcc--ccEEcHHhC
Confidence            9999999853  555554  788999999999543  777766543

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.91  E-value=1.1e-05  Score=73.01  Aligned_cols=108  Identities=15%  Similarity=0.115  Sum_probs=72.7

Q ss_pred             cccCcce--ecccccc--hhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccCccCchhhhhhccCcEeecCC
Q 038150          177 RVKRMRT--LLINDHS--LLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVLPETLCELYNLEKLDISD  252 (488)
Q Consensus       177 ~~~~Lr~--L~l~~~~--~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~lp~~i~~L~~L~~L~l~~  252 (488)
                      ..+.|+.  +++..|.  .+.. .++....++++|+.|+|++|.      +..++      .+|..++.+++|++|+|++
T Consensus       139 ~dp~L~~~~l~l~~N~~~~~~~-~l~i~~~~l~~L~~L~Ls~N~------l~~l~------~l~~~~~~l~~L~~L~Ls~  205 (267)
T 3rw6_A          139 SDPDLVAQNIDVVLNRRSCMAA-TLRIIEENIPELLSLNLSNNR------LYRLD------DMSSIVQKAPNLKILNLSG  205 (267)
T ss_dssp             GCHHHHHTTCCCCTTSHHHHHH-HHHHHHHHCTTCCEEECTTSC------CCCCG------GGTTHHHHSTTCCEEECTT
T ss_pred             CCcchhhcCccccCCHHHHHHH-HHHHHHhhCCCCCEEECCCCC------CCCCc------cchhHHhhCCCCCEEECCC
Confidence            3444554  4555541  1222 333334679999999999999      44332      3556788999999999999


Q ss_pred             CCCcccCchhhcccc--ccceeeccCCCCCCCCCC-------CCCCcccccccCce
Q 038150          253 CFNLKELPEGIGKLI--NVKHLLNRGTNSLRYMPV-------GIGRLTGLRTLGEF  299 (488)
Q Consensus       253 ~~~~~~lp~~l~~L~--~L~~L~l~~~~~~~~lp~-------~i~~L~~L~~L~l~  299 (488)
                      |. +..+ ..+..+.  +|++|++.+|.+...+|.       .+..+++|+.|+..
T Consensus       206 N~-i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg~  259 (267)
T 3rw6_A          206 NE-LKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDGH  259 (267)
T ss_dssp             SC-CCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEESSC
T ss_pred             Cc-cCCc-hhhhhcccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeECCc
Confidence            76 5554 3455555  899999999986665552       25677888877653

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.74  E-value=5.7e-06  Score=71.13  Aligned_cols=94  Identities=22%  Similarity=0.130  Sum_probs=44.6

Q ss_pred             hhhhHhhcccCCCCCceeeccc-CchhhhhhhccccchHHHhhhCCCCCCCCEEEeccccCCCC----CchHHHhccCCc
Q 038150          339 GEAKRLELDKKKYLSSLTLWFD-KEEEEEGERRKNEDNQLLLEALRPPLNLKELEIEYYRGNTV----FPSWMTSLTNLK  413 (488)
Q Consensus       339 ~~~~~~~l~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~----lp~~~~~l~~L~  413 (488)
                      .+.+...+...+.|+.|++++| .+....        ...+...+...++|++|+|++|.+...    +...+...++|+
T Consensus        25 ~~~l~~~l~~~~~L~~L~L~~n~~i~~~g--------~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~   96 (185)
T 1io0_A           25 EETLKRIQNNDPDLEEVNLNNIMNIPVPT--------LKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLK   96 (185)
T ss_dssp             HHHHHHHHTTCTTCCEEECTTCTTCCHHH--------HHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCC
T ss_pred             HHHHHHHHhcCCCCCEEEecCCCCCCHHH--------HHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcC
Confidence            3444455555555666666655 543221        133444455555566666665554321    122233345566


Q ss_pred             EEeecCCCCCCC----CC-CCCCCCCcCeeee
Q 038150          414 SLDLSSCENCEQ----LP-PLGKLQSLENLHI  440 (488)
Q Consensus       414 ~L~l~~~~~~~~----~~-~l~~l~~L~~L~l  440 (488)
                      +|+|++|.+...    +. .+...++|++|++
T Consensus        97 ~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L  128 (185)
T 1io0_A           97 SLNVESNFISGSGILALVEALQSNTSLIELRI  128 (185)
T ss_dssp             EEECCSSCCCHHHHHHHHHGGGGCSSCCEEEC
T ss_pred             EEECcCCcCCHHHHHHHHHHHHhCCCceEEEe
Confidence            666665553322    11 1344455666666

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.55  E-value=1.9e-05  Score=67.86  Aligned_cols=70  Identities=20%  Similarity=0.101  Sum_probs=34.8

Q ss_pred             hhcccCCCCCceeecccCchhhhhhhccccchHHHhhhCCCCCCCCEEEe--ccccCCCC----CchHHHhccCCcEEee
Q 038150          344 LELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKELEI--EYYRGNTV----FPSWMTSLTNLKSLDL  417 (488)
Q Consensus       344 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l--~~~~~~~~----lp~~~~~l~~L~~L~l  417 (488)
                      ..+...++|+.|++++|.+....        ...+...+...++|+.|+|  ++|.+...    +...+...++|++|++
T Consensus        87 ~~L~~n~~L~~L~L~~N~i~~~g--------~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L  158 (185)
T 1io0_A           87 EMLKVNNTLKSLNVESNFISGSG--------ILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGY  158 (185)
T ss_dssp             HHHHHCSSCCEEECCSSCCCHHH--------HHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEEC
T ss_pred             HHHHhCCCcCEEECcCCcCCHHH--------HHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEec
Confidence            34444556666666666654321        1334455555556666666  44544421    1122233455566655


Q ss_pred             cCCC
Q 038150          418 SSCE  421 (488)
Q Consensus       418 ~~~~  421 (488)
                      ++|.
T Consensus       159 ~~n~  162 (185)
T 1io0_A          159 HFTQ  162 (185)
T ss_dssp             CCSS
T ss_pred             cCCC
Confidence            5554

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.36  E-value=0.00017  Score=65.34  Aligned_cols=83  Identities=12%  Similarity=0.140  Sum_probs=61.5

Q ss_pred             ccccCcceecccccchhhh-hhHHHHHhcCCccceeecCCCcccccccCCcccccccCccCchhhhhhc--cCcEeecCC
Q 038150          176 LRVKRMRTLLINDHSLLNA-AILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVLPETLCELY--NLEKLDISD  252 (488)
Q Consensus       176 ~~~~~Lr~L~l~~~~~~~~-~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~lp~~i~~L~--~L~~L~l~~  252 (488)
                      .++++|++|++++| .+.. ..++..+..+++|++|+|++|.      +..+          ..+..+.  +|++|++++
T Consensus       167 ~~l~~L~~L~Ls~N-~l~~l~~l~~~~~~l~~L~~L~Ls~N~------i~~~----------~~l~~l~~l~L~~L~L~~  229 (267)
T 3rw6_A          167 ENIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGNE------LKSE----------RELDKIKGLKLEELWLDG  229 (267)
T ss_dssp             HHCTTCCEEECTTS-CCCCCGGGTTHHHHSTTCCEEECTTSC------CCSG----------GGGGGGTTSCCSEEECTT
T ss_pred             hhCCCCCEEECCCC-CCCCCccchhHHhhCCCCCEEECCCCc------cCCc----------hhhhhcccCCcceEEccC
Confidence            45789999999998 4432 1245667899999999999999      4322          3445555  999999999


Q ss_pred             CCCcccCc-------hhhccccccceeecc
Q 038150          253 CFNLKELP-------EGIGKLINVKHLLNR  275 (488)
Q Consensus       253 ~~~~~~lp-------~~l~~L~~L~~L~l~  275 (488)
                      |.....+|       ..+..+++|+.|+-.
T Consensus       230 Npl~~~~~~~~~y~~~il~~~P~L~~LDg~  259 (267)
T 3rw6_A          230 NSLCDTFRDQSTYISAIRERFPKLLRLDGH  259 (267)
T ss_dssp             STTGGGCSSHHHHHHHHHHHCTTCCEESSC
T ss_pred             CcCccccCcchhHHHHHHHHCcccCeECCc
Confidence            88655555       236788999998653

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=97.24  E-value=0.0019  Score=62.50  Aligned_cols=68  Identities=19%  Similarity=0.173  Sum_probs=42.9

Q ss_pred             hCCCCCCCCEEEeccccCCCCCchHHHhccCCcEEeecCCCCCCCCCC--CCCCCCcCeeeecccccceeeCccc
Q 038150          381 ALRPPLNLKELEIEYYRGNTVFPSWMTSLTNLKSLDLSSCENCEQLPP--LGKLQSLENLHIWRMESVKRVGDEF  453 (488)
Q Consensus       381 ~~~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~--l~~l~~L~~L~l~~~~~l~~~~~~~  453 (488)
                      .+..+.+|+.+.+..+ ....-...+..+.+|+.++|...  .+.+..  +..+.+|+.+.+...  ++.++...
T Consensus       292 ~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~a  361 (394)
T 4fs7_A          292 TFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL--VEEIGKRSFRGCTSLSNINFPLS--LRKIGANA  361 (394)
T ss_dssp             TTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT--CCEECTTTTTTCTTCCEECCCTT--CCEECTTT
T ss_pred             cccccccccccccccc-cceechhhhcCCCCCCEEEeCCc--ccEEhHHhccCCCCCCEEEECcc--ccEehHHH
Confidence            3456677888887654 22212334567788888888643  445543  677888888888543  66776543

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=96.70  E-value=0.0022  Score=62.08  Aligned_cols=215  Identities=11%  Similarity=0.103  Sum_probs=123.0

Q ss_pred             ccccccCcceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccCccCchhhhhhccCcEeecCCC
Q 038150          174 STLRVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVLPETLCELYNLEKLDISDC  253 (488)
Q Consensus       174 ~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~lp~~i~~L~~L~~L~l~~~  253 (488)
                      .|.+|++|+.+.+..+  +.. .....|..+..|+.+.+..+-       ..++        ...+.++..|+.+.+..+
T Consensus       157 aF~~c~~L~~i~l~~~--~~~-I~~~~F~~c~~L~~i~l~~~~-------~~I~--------~~~F~~~~~L~~i~~~~~  218 (394)
T 4fs7_A          157 AFATCESLEYVSLPDS--MET-LHNGLFSGCGKLKSIKLPRNL-------KIIR--------DYCFAECILLENMEFPNS  218 (394)
T ss_dssp             TTTTCTTCCEEECCTT--CCE-ECTTTTTTCTTCCBCCCCTTC-------CEEC--------TTTTTTCTTCCBCCCCTT
T ss_pred             hhcccCCCcEEecCCc--cce-eccccccCCCCceEEEcCCCc-------eEeC--------chhhccccccceeecCCC
Confidence            5678899999998764  222 333557888999999887652       2111        123556777777776653


Q ss_pred             CCcccCchhhccccccceeeccCCCCCCCCC-CCCCCcccccccCceeecCCCCCCCCcccCcccccCCCcccccccccc
Q 038150          254 FNLKELPEGIGKLINVKHLLNRGTNSLRYMP-VGIGRLTGLRTLGEFHVSAGGGVDGRKACRLESLKNLEHLQVCGISRL  332 (488)
Q Consensus       254 ~~~~~lp~~l~~L~~L~~L~l~~~~~~~~lp-~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~  332 (488)
                      .  ..+........+|+.+.+....  ..+. ..+..+.+|+.+.+..+...        -..........+........
T Consensus       219 ~--~~i~~~~~~~~~l~~i~ip~~~--~~i~~~~f~~~~~l~~~~~~~~~~~--------i~~~~F~~~~~l~~~~~~~~  286 (394)
T 4fs7_A          219 L--YYLGDFALSKTGVKNIIIPDSF--TELGKSVFYGCTDLESISIQNNKLR--------IGGSLFYNCSGLKKVIYGSV  286 (394)
T ss_dssp             C--CEECTTTTTTCCCCEEEECTTC--CEECSSTTTTCSSCCEEEECCTTCE--------ECSCTTTTCTTCCEEEECSS
T ss_pred             c--eEeehhhcccCCCceEEECCCc--eecccccccccccceeEEcCCCcce--------eeccccccccccceeccCce
Confidence            2  2222333344677777776542  2222 33556677776655432110        00111222333333222211


Q ss_pred             cCCCChhhhhHhhcccCCCCCceeecccCchhhhhhhccccchHHH-hhhCCCCCCCCEEEeccccCCCCCchHHHhccC
Q 038150          333 GDVSDVGEAKRLELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLL-LEALRPPLNLKELEIEYYRGNTVFPSWMTSLTN  411 (488)
Q Consensus       333 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~lp~~~~~l~~  411 (488)
                      . ++.      ..+..+.+|+.+.+..+ +             ..+ ...+..+.+|+.+.|... ....-...+..+.+
T Consensus       287 ~-i~~------~~F~~~~~L~~i~l~~~-i-------------~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~  344 (394)
T 4fs7_A          287 I-VPE------KTFYGCSSLTEVKLLDS-V-------------KFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTS  344 (394)
T ss_dssp             E-ECT------TTTTTCTTCCEEEECTT-C-------------CEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTT
T ss_pred             e-ecc------ccccccccccccccccc-c-------------ceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCC
Confidence            1 111      34556778888887544 2             111 235677889999998653 33312445668899


Q ss_pred             CcEEeecCCCCCCCCCC--CCCCCCcCeeeecc
Q 038150          412 LKSLDLSSCENCEQLPP--LGKLQSLENLHIWR  442 (488)
Q Consensus       412 L~~L~l~~~~~~~~~~~--l~~l~~L~~L~l~~  442 (488)
                      |+.+.+..+  ++.+..  +..+++|+.+++..
T Consensus       345 L~~i~lp~~--l~~I~~~aF~~C~~L~~i~lp~  375 (394)
T 4fs7_A          345 LSNINFPLS--LRKIGANAFQGCINLKKVELPK  375 (394)
T ss_dssp             CCEECCCTT--CCEECTTTBTTCTTCCEEEEEG
T ss_pred             CCEEEECcc--ccEehHHHhhCCCCCCEEEECC
Confidence            999999755  455553  78899999998854

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=96.37  E-value=0.0074  Score=58.27  Aligned_cols=55  Identities=22%  Similarity=0.290  Sum_probs=23.3

Q ss_pred             CCCCCCCCEEEeccccCCCCCc-hHHHhccCCcEEeecCCCCCCCCCC--CCCCCCcCeeee
Q 038150          382 LRPPLNLKELEIEYYRGNTVFP-SWMTSLTNLKSLDLSSCENCEQLPP--LGKLQSLENLHI  440 (488)
Q Consensus       382 ~~~~~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~~~~~--l~~l~~L~~L~l  440 (488)
                      +..+++|+.+.+... ... ++ ..+..+.+|+.+.|..+  .+.+..  +..+.+|+.+.|
T Consensus       284 F~~c~~L~~i~l~~~-i~~-I~~~aF~~c~~L~~i~lp~~--v~~I~~~aF~~C~~L~~i~i  341 (394)
T 4gt6_A          284 FMNCPALQDIEFSSR-ITE-LPESVFAGCISLKSIDIPEG--ITQILDDAFAGCEQLERIAI  341 (394)
T ss_dssp             TTTCTTCCEEECCTT-CCE-ECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEE
T ss_pred             cccccccccccCCCc-ccc-cCceeecCCCCcCEEEeCCc--ccEehHhHhhCCCCCCEEEE
Confidence            334455555555321 111 21 22334455555555432  233322  444555555555

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=94.20  E-value=0.2  Score=48.12  Aligned_cols=83  Identities=12%  Similarity=0.144  Sum_probs=55.1

Q ss_pred             hcccCCCCCceeecccCchhhhhhhccccchHHH-hhhCCCCCCCCEEEeccccCCCCCchHHHhccCCcEEeecCCCCC
Q 038150          345 ELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLL-LEALRPPLNLKELEIEYYRGNTVFPSWMTSLTNLKSLDLSSCENC  423 (488)
Q Consensus       345 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~  423 (488)
                      .+.++..|+.+.+... +             ..+ ...+..+.+|+.+.|..+ ....-...+..+.+|+.+.|..+  .
T Consensus       283 aF~~c~~L~~i~l~~~-i-------------~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s--v  345 (394)
T 4gt6_A          283 AFMNCPALQDIEFSSR-I-------------TELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS--V  345 (394)
T ss_dssp             TTTTCTTCCEEECCTT-C-------------CEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT--C
T ss_pred             ccccccccccccCCCc-c-------------cccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc--c
Confidence            3455666776666432 1             111 234677889999999754 22212345678899999999654  5


Q ss_pred             CCCCC--CCCCCCcCeeeecccc
Q 038150          424 EQLPP--LGKLQSLENLHIWRME  444 (488)
Q Consensus       424 ~~~~~--l~~l~~L~~L~l~~~~  444 (488)
                      +.+..  +..+++|+.+++.+..
T Consensus       346 ~~I~~~aF~~C~~L~~i~~~~~~  368 (394)
T 4gt6_A          346 TKIPESAFSNCTALNNIEYSGSR  368 (394)
T ss_dssp             CBCCGGGGTTCTTCCEEEESSCH
T ss_pred             CEEhHhHhhCCCCCCEEEECCce
Confidence            56654  7889999999997754

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=94.12  E-value=0.02  Score=48.85  Aligned_cols=72  Identities=13%  Similarity=-0.000  Sum_probs=42.5

Q ss_pred             hhHhhcccCCCCCceeecccCchhhhhhhccccchHHHhhhCCCCCCCCEEEeccccC---CC----CCchHHHhccCCc
Q 038150          341 AKRLELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKELEIEYYRG---NT----VFPSWMTSLTNLK  413 (488)
Q Consensus       341 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~---~~----~lp~~~~~l~~L~  413 (488)
                      ++...+..-+.|+.|++++|.+....        ...+.+.+..-+.|+.|.|+++..   ..    .+-..+..-+.|+
T Consensus        89 alA~aL~~N~tL~~L~L~~N~Ig~~G--------a~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~  160 (197)
T 1pgv_A           89 GLIELIETSPSLRVLNVESNFLTPEL--------LARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLL  160 (197)
T ss_dssp             THHHHHHHCSSCCEEECCSSBCCHHH--------HHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCC
T ss_pred             HHHHHHhcCCccCeEecCCCcCCHHH--------HHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcC
Confidence            34455666677888888888775432        255566677667788888875433   11    0112233445677


Q ss_pred             EEeecCC
Q 038150          414 SLDLSSC  420 (488)
Q Consensus       414 ~L~l~~~  420 (488)
                      .|+++.+
T Consensus       161 ~L~l~~~  167 (197)
T 1pgv_A          161 RVGISFA  167 (197)
T ss_dssp             EEECCCC
T ss_pred             eEeccCC
Confidence            7776544

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=93.59  E-value=0.67  Score=43.97  Aligned_cols=70  Identities=13%  Similarity=0.145  Sum_probs=43.1

Q ss_pred             hCCCCCCCCEEEeccccCCCCCchHHHhccCCcEEeecCCCCCCCCCC--CCCCCCcCeeeecccccceeeCcccc
Q 038150          381 ALRPPLNLKELEIEYYRGNTVFPSWMTSLTNLKSLDLSSCENCEQLPP--LGKLQSLENLHIWRMESVKRVGDEFL  454 (488)
Q Consensus       381 ~~~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~--l~~l~~L~~L~l~~~~~l~~~~~~~~  454 (488)
                      .+..+.+|+.+.+.++.+...-...+..+.+|+.+.|..+  ++.+..  +.++++|+.+.+..  .++.++...+
T Consensus       281 aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L~~i~ip~--~v~~I~~~aF  352 (379)
T 4h09_A          281 LCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA--LKTIQVYAFKNCKALSTISYPK--SITLIESGAF  352 (379)
T ss_dssp             TTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCCCCCCT--TCCEECTTTT
T ss_pred             ccccccccccccccccccceehhhhhcCCCCCCEEEcCcc--ccEEHHHHhhCCCCCCEEEECC--ccCEEchhHh
Confidence            3556677888877766555422345566777888877543  444443  66777788777743  3666665433

>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*

Probab=93.49  E-value=0.013  Score=59.31  Aligned_cols=38  Identities=3%  Similarity=-0.243  Sum_probs=31.7

Q ss_pred             cccccccccccceeec-----------ccccCCCcccccchhhhHHHHHHH--HHH
Q 038150           76 ALIAPHKKKKVRFCFR-----------ASCLGFKTEEFGFKQVFLRHDIAN--KIK  118 (488)
Q Consensus        76 ~~~~~~~~~~lk~cf~-----------~~cs~fped~~i~~~~l~~~~ia~--~i~  118 (488)
                      ...+++++..+|.||.           | ||+||+||.|.    ++.|+|+  |+.
T Consensus       368 ~~Sy~~L~~~lk~~f~~Ls~~er~l~~~-ls~fp~~~~i~----i~~w~a~~~G~i  418 (549)
T 2a5y_B          368 PYSYKSLAMALQRCVEVLSDEDRSALAF-AVVMPPGVDIP----VKLWSCVIPVDI  418 (549)
T ss_dssp             SSSSSSHHHHHHHHHHTSCHHHHHHTTG-GGSSCTTCCEE----HHHHHHHSCC--
T ss_pred             hcccccccHHHHHHHhccchhhhhHhhh-eeeeCCCCeee----eeeeeeecccee
Confidence            3445578999999999           9 99999999999    8999999  774

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=93.12  E-value=0.11  Score=44.24  Aligned_cols=44  Identities=14%  Similarity=0.167  Sum_probs=18.9

Q ss_pred             HhhhCCCCCCCCEEEeccccCCCC----CchHHHhccCCcEEeecCCC
Q 038150          378 LLEALRPPLNLKELEIEYYRGNTV----FPSWMTSLTNLKSLDLSSCE  421 (488)
Q Consensus       378 ~~~~~~~~~~L~~L~l~~~~~~~~----lp~~~~~l~~L~~L~l~~~~  421 (488)
                      +.+.+..-..|+.|+|++|.+...    +-..+..-+.|++|+|+.|.
T Consensus        62 la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~  109 (197)
T 1pgv_A           62 LIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNF  109 (197)
T ss_dssp             HHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSB
T ss_pred             HHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCc
Confidence            334444444555555555544320    11122233445555555554

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=92.63  E-value=0.96  Score=42.88  Aligned_cols=60  Identities=8%  Similarity=-0.039  Sum_probs=28.3

Q ss_pred             hcccCCCCCceeecccCchhhhhhhccccchHHHhhhCCCCCCCCEEEeccccCCCCC-chHHHhccCCcEEeec
Q 038150          345 ELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKELEIEYYRGNTVF-PSWMTSLTNLKSLDLS  418 (488)
Q Consensus       345 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l-p~~~~~l~~L~~L~l~  418 (488)
                      .+.++.+|+.+.+..+.+...            -...+..+.+|+.+.|..+ ... + ...+..+.+|+.+.+.
T Consensus       281 aF~~c~~L~~i~l~~~~i~~I------------~~~aF~~c~~L~~i~lp~~-l~~-I~~~aF~~C~~L~~i~ip  341 (379)
T 4h09_A          281 LCSGCSNLTKVVMDNSAIETL------------EPRVFMDCVKLSSVTLPTA-LKT-IQVYAFKNCKALSTISYP  341 (379)
T ss_dssp             TTTTCTTCCEEEECCTTCCEE------------CTTTTTTCTTCCEEECCTT-CCE-ECTTTTTTCTTCCCCCCC
T ss_pred             cccccccccccccccccccee------------hhhhhcCCCCCCEEEcCcc-ccE-EHHHHhhCCCCCCEEEEC
Confidence            345556666666654433211            0134555666666666432 221 2 2234455555555553

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=89.16  E-value=0.71  Score=36.29  Aligned_cols=34  Identities=18%  Similarity=0.249  Sum_probs=19.6

Q ss_pred             cCcEeecCCCCCcccCchh-hccccccceeeccCCC
Q 038150          244 NLEKLDISDCFNLKELPEG-IGKLINVKHLLNRGTN  278 (488)
Q Consensus       244 ~L~~L~l~~~~~~~~lp~~-l~~L~~L~~L~l~~~~  278 (488)
                      +|++|+|++|. +..+|.+ +..+++|++|++.+|.
T Consensus        32 ~l~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~NP   66 (130)
T 3rfe_A           32 DTTELVLTGNN-LTALPPGLLDALPALRTAHLGANP   66 (130)
T ss_dssp             TCSEEECTTSC-CSSCCTTTGGGCTTCCEEECCSSC
T ss_pred             CCCEEECCCCc-CCccChhhhhhccccCEEEecCCC
Confidence            35666666644 5555443 3556666666666654

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*

Probab=86.84  E-value=0.12  Score=55.47  Aligned_cols=35  Identities=9%  Similarity=-0.198  Sum_probs=31.8

Q ss_pred             cccccc-ceeecccccCCCcccccchhhhHHHHHHHH
Q 038150           81 HKKKKV-RFCFRASCLGFKTEEFGFKQVFLRHDIANK  116 (488)
Q Consensus        81 ~~~~~l-k~cf~~~cs~fped~~i~~~~l~~~~ia~~  116 (488)
                      .++... |.||+| ||+||+|+.|.++.+++.|++++
T Consensus       365 ~Lp~eelK~cFL~-LAIFPed~~I~~elLa~LW~aeG  400 (1221)
T 1vt4_I          365 VLEPAEYRKMFDR-LSVFPPSAHIPTILLSLIWFDVI  400 (1221)
T ss_dssp             HSCTTHHHHHHHH-TTSSCTTSCEEHHHHHHHHCSSC
T ss_pred             hCCHHHHHHHHHH-HhCCCCCCCCCHHHHHHHhcCCC
Confidence            457778 999999 99999999999999999999875

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=86.62  E-value=0.65  Score=36.51  Aligned_cols=35  Identities=17%  Similarity=0.291  Sum_probs=22.0

Q ss_pred             CCCCEEEeccccCCCCCc-hHHHhccCCcEEeecCCC
Q 038150          386 LNLKELEIEYYRGNTVFP-SWMTSLTNLKSLDLSSCE  421 (488)
Q Consensus       386 ~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~l~~~~  421 (488)
                      ++|+.|+|++|.+.. +| ..+..+++|+.|+|.+|+
T Consensus        31 ~~l~~L~Ls~N~l~~-l~~~~f~~l~~L~~L~L~~NP   66 (130)
T 3rfe_A           31 VDTTELVLTGNNLTA-LPPGLLDALPALRTAHLGANP   66 (130)
T ss_dssp             TTCSEEECTTSCCSS-CCTTTGGGCTTCCEEECCSSC
T ss_pred             cCCCEEECCCCcCCc-cChhhhhhccccCEEEecCCC
Confidence            466777777776666 43 334566677777776665

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=83.50  E-value=1  Score=50.09  Aligned_cols=35  Identities=3%  Similarity=-0.143  Sum_probs=31.9

Q ss_pred             ccccccceeecccccCCCcccccchhhhHHHHHHHH
Q 038150           81 HKKKKVRFCFRASCLGFKTEEFGFKQVFLRHDIANK  116 (488)
Q Consensus        81 ~~~~~lk~cf~~~cs~fped~~i~~~~l~~~~ia~~  116 (488)
                      .++...|.||.| ||+||+++.|.+..+++.|.+++
T Consensus       374 ~L~~~~~~~~~~-l~~f~~~~~i~~~~~~~~~~~~~  408 (1249)
T 3sfz_A          374 MLREDIKDYYTD-LSILQKDVKVPTKVLCVLWDLET  408 (1249)
T ss_dssp             TSCTTTHHHHHH-GGGSCTTCCEEHHHHHHHHTCCH
T ss_pred             hCCHHHHHHHHH-hCccCCCCeeCHHHHHHHhCCCH
Confidence            467889999999 99999999999999999998664

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	488
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-06
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	3e-06
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	9e-06
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	1e-04
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	0.002
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.002
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.003

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.0 bits (110), Expect = 2e-06
 Identities = 36/206 (17%), Positives = 61/206 (29%), Gaps = 10/206 (4%)

Query: 239 LCELYNLEKLDISDC--FNLKELPEGIGKLINVKHLLNRGTNSLRYMPVG-IGRLTGLRT 295
           +CE+  +      +C   NL  LP  + K   + HL     N L    +  +   T L  
Sbjct: 3   ICEVSKVASHLEVNCDKRNLTALPPDLPKDTTILHLSE---NLLYTFSLATLMPYTRLTQ 59

Query: 296 LGEFHVSAGGGVDGRKACRLESLKNLEHLQVCGISRLGDVSDVGEAKRLELDKKKYLSSL 355
           L   ++        +    L  L  L+       S       +     L++   +  S  
Sbjct: 60  L---NLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLP 116

Query: 356 TLWF-DKEEEEEGERRKNEDNQLLLEALRPPLNLKELEIEYYRGNTVFPSWMTSLTNLKS 414
                   E +E   + NE   L    L P   L++L +       +    +  L NL +
Sbjct: 117 LGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDT 176

Query: 415 LDLSSCENCEQLPPLGKLQSLENLHI 440
           L L                 L    +
Sbjct: 177 LLLQENSLYTIPKGFFGSHLLPFAFL 202

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 46.7 bits (109), Expect = 3e-06
 Identities = 12/39 (30%), Positives = 18/39 (46%)

Query: 402 FPSWMTSLTNLKSLDLSSCENCEQLPPLGKLQSLENLHI 440
            P  +T L  L SL++S    C ++P  G LQ  +    
Sbjct: 260 LPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAY 298

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 45.4 bits (106), Expect = 9e-06
 Identities = 39/202 (19%), Positives = 67/202 (33%), Gaps = 16/202 (7%)

Query: 240 CELYNLEKLDISDCFNLKELPEGIGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEF 299
            +L NLE L  ++       P GI   ++   L     N L+ +   +  LT L  L   
Sbjct: 194 AKLTNLESLIATNNQISDITPLGILTNLDELSLNG---NQLKDIG-TLASLTNLTDLDLA 249

Query: 300 HVSAGGGVDGRKACRLESLKNLEHLQVCGISRLGDVSDVGEAKRLELDKKKYLSSLTLWF 359
           +             +L  L  L   Q+  IS L  ++ +   +  E   +       L  
Sbjct: 250 NNQISNLAPLSGLTKLTEL-KLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKN 308

Query: 360 DKEEEEEGERRKNEDNQLLLEALRPPLNLKELEIEYYRGNTVF-PSWMTSLTNLKSLDLS 418
                              +  + P  +L +L+  ++  N V   S + +LTN+  L   
Sbjct: 309 LTYLTLYFNN---------ISDISPVSSLTKLQRLFFANNKVSDVSSLANLTNINWLSAG 359

Query: 419 SCENCEQLPPLGKLQSLENLHI 440
                  L PL  L  +  L +
Sbjct: 360 HN-QISDLTPLANLTRITQLGL 380

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.2 bits (95), Expect = 1e-04
 Identities = 32/204 (15%), Positives = 61/204 (29%), Gaps = 16/204 (7%)

Query: 238 TLCELYNLEKLDISDCFNLKELPEGIGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTLG 297
           T  +L  +  L       +  + EG+  L N+  L     N +  +           T  
Sbjct: 36  TQADLDGITTLSAFGT-GVTTI-EGVQYLNNLIGL-ELKDNQITDLAP-----LKNLTKI 87

Query: 298 EFHVSAGGGVDGRKACRLESLKNLEHLQVCGISRLGDVSDVGEAKRLELDKKKYLSSLTL 357
                +G  +    A           L    I+ +  ++ +   + L LD  +  +   L
Sbjct: 88  TELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPL 147

Query: 358 WFDKEEEEEGERRKNEDNQLLLEALRPPLNLKELEIEYYRGNTVF-PSWMTSLTNLKSLD 416
                 +          +   L       NL +L       N +   S + SL NL  + 
Sbjct: 148 AGLTNLQYLSIGNAQVSDLTPLA------NLSKLTTLKADDNKISDISPLASLPNLIEVH 201

Query: 417 LSSCENCEQLPPLGKLQSLENLHI 440
           L +      + PL    +L  + +
Sbjct: 202 LKNN-QISDVSPLANTSNLFIVTL 224

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.8 bits (86), Expect = 0.002
 Identities = 27/251 (10%), Positives = 60/251 (23%), Gaps = 22/251 (8%)

Query: 210 LDFGGSYHSTRLLTPEVPRNIEKLVLPETLCE--------LYNLEKLDISDC-FNLKELP 260
           LD  G      +    + + +     P +  +         + ++ +D+S+    +  L 
Sbjct: 5   LDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLH 64

Query: 261 EGIGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTL-GEFHVSAGGGVDGRKACRLESLK 319
             + +   +++L   G      +   + + + L  L                      L 
Sbjct: 65  GILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLD 124

Query: 320 NLEHLQVCGISRLGDVSDVGEAKRLELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQL-- 377
            L        +       V                  L                   L  
Sbjct: 125 ELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSD 184

Query: 378 -------LLEALRPPLNLKELEIEY-YRGNTVFPSWMTSLTNLKSLDLSSCENCEQLPPL 429
                    +       L+ L +   Y         +  +  LK+L +        L  L
Sbjct: 185 SVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLL 244

Query: 430 GKLQSLENLHI 440
              ++L +L I
Sbjct: 245 --KEALPHLQI 253

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (86), Expect = 0.002
 Identities = 10/61 (16%), Positives = 25/61 (40%), Gaps = 6/61 (9%)

Query: 386 LNLKELEIEYYR-GNTVFPSWMTSLTNLKSLDLSSC----ENCEQLPP-LGKLQSLENLH 439
           L+++ L+I+     +  +   +  L   + + L  C      C+ +   L    +L  L+
Sbjct: 2   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 61

Query: 440 I 440
           +
Sbjct: 62  L 62

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.2 bits (84), Expect = 0.003
 Identities = 10/54 (18%), Positives = 22/54 (40%), Gaps = 3/54 (5%)

Query: 376 QLLLEALRPPLNLKELEIEYYRGNTVFPSWMTSLTNLKSLDLSSCENCEQLPPL 429
           +L  +          L+I   R +++    + +L  L++       N ++LP L
Sbjct: 191 ELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTY---NLKKLPTL 241

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	488
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.85
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.81
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.78
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.75
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.65
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.64
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.63
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.63
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.63
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.63
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.61
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.56
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.54
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.53
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.5
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.49
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.48
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.43
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.38
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.32
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.26
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.25
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.19
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.13
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.13
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.02
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.01
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.01
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.99
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	98.99
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.97
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.89
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.82
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.64
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.52
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.29
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.96
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.19
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	96.8
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	96.71
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	95.9
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	95.37

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.85  E-value=1.1e-22  Score=191.04  Aligned_cols=252  Identities=20%  Similarity=0.187  Sum_probs=199.4

Q ss_pred             ccceeeEEEEecCC---cCccccccccCcceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccC
Q 038150          156 EKVRHLMLIFSKAA---SLPISTLRVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEK  232 (488)
Q Consensus       156 ~~vr~l~l~~~~~~---~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~  232 (488)
                      .+|+.+++..+...   .+|..++++++|++|++++++.+.+ .+|..|.++++|++|+|++|.+     .+        
T Consensus        50 ~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g-~iP~~i~~L~~L~~L~Ls~N~l-----~~--------  115 (313)
T d1ogqa_          50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVG-PIPPAIAKLTQLHYLYITHTNV-----SG--------  115 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEES-CCCGGGGGCTTCSEEEEEEECC-----EE--------
T ss_pred             EEEEEEECCCCCCCCCCCCChHHhcCcccccccccccccccc-ccccccccccccchhhhccccc-----cc--------
Confidence            36889999987764   5788999999999999997546665 6777899999999999999985     33        


Q ss_pred             ccCchhhhhhccCcEeecCCCCCcccCchhhccccccceeeccCCCCCCCCCCCCCCcccc-cccCceeecCCCCCCCCc
Q 038150          233 LVLPETLCELYNLEKLDISDCFNLKELPEGIGKLINVKHLLNRGTNSLRYMPVGIGRLTGL-RTLGEFHVSAGGGVDGRK  311 (488)
Q Consensus       233 l~lp~~i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L-~~L~l~~~~~~~~~~~~~  311 (488)
                       ..|..+..+.+|+++++++|.....+|..++++++|+++++++|.....+|..++.+.++ +.+.+..+...+.     
T Consensus       116 -~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~-----  189 (313)
T d1ogqa_         116 -AIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGK-----  189 (313)
T ss_dssp             -ECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEE-----
T ss_pred             -cccccccchhhhcccccccccccccCchhhccCcccceeecccccccccccccccccccccccccccccccccc-----
Confidence             445668889999999999998888899999999999999999999877889888888876 6677766655431     


Q ss_pred             ccCcccccCCCcccccccccccCCCChhhhhHhhcccCCCCCceeecccCchhhhhhhccccchHHHhhhCCCCCCCCEE
Q 038150          312 ACRLESLKNLEHLQVCGISRLGDVSDVGEAKRLELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKEL  391 (488)
Q Consensus       312 ~~~~~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L  391 (488)
                        ....+.++..+ .+.+.....    ....+..+..+++++.++++++.+...             +..+..+++|+.|
T Consensus       190 --~~~~~~~l~~~-~l~l~~~~~----~~~~~~~~~~~~~l~~l~~~~~~l~~~-------------~~~~~~~~~L~~L  249 (313)
T d1ogqa_         190 --IPPTFANLNLA-FVDLSRNML----EGDASVLFGSDKNTQKIHLAKNSLAFD-------------LGKVGLSKNLNGL  249 (313)
T ss_dssp             --CCGGGGGCCCS-EEECCSSEE----EECCGGGCCTTSCCSEEECCSSEECCB-------------GGGCCCCTTCCEE
T ss_pred             --ccccccccccc-ccccccccc----ccccccccccccccccccccccccccc-------------ccccccccccccc
Confidence              12233333332 233322111    111235667889999999999987432             4568889999999


Q ss_pred             EeccccCCCCCchHHHhccCCcEEeecCCCCCCCCCCCCCCCCcCeeeecccccce
Q 038150          392 EIEYYRGNTVFPSWMTSLTNLKSLDLSSCENCEQLPPLGKLQSLENLHIWRMESVK  447 (488)
Q Consensus       392 ~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~  447 (488)
                      ++++|.+...+|.+++.+++|++|+|++|...+.+|.++++++|+.+++.+|+.+.
T Consensus       250 ~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~~~L~~L~~l~l~~N~~l~  305 (313)
T d1ogqa_         250 DLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLC  305 (313)
T ss_dssp             ECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEE
T ss_pred             cCccCeecccCChHHhCCCCCCEEECcCCcccccCCCcccCCCCCHHHhCCCcccc
Confidence            99999998669999999999999999999988789999999999999999997443

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.81  E-value=3.5e-21  Score=180.78  Aligned_cols=249  Identities=16%  Similarity=0.091  Sum_probs=187.6

Q ss_pred             cCcceecccccchhhh-hhHHHHHhcCCccceeecCC-CcccccccCCcccccccCccCchhhhhhccCcEeecCCCCCc
Q 038150          179 KRMRTLLINDHSLLNA-AILEELFRELTSLRALDFGG-SYHSTRLLTPEVPRNIEKLVLPETLCELYNLEKLDISDCFNL  256 (488)
Q Consensus       179 ~~Lr~L~l~~~~~~~~-~~~~~~~~~l~~Lr~L~Ls~-~~~~~~~~~~~lp~~i~~l~lp~~i~~L~~L~~L~l~~~~~~  256 (488)
                      .+++.|++.++ .+.+ ..+|..+.++++|++|+|++ |.+     .+         .+|.+|++|++|++|++++|...
T Consensus        50 ~~v~~L~L~~~-~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l-----~g---------~iP~~i~~L~~L~~L~Ls~N~l~  114 (313)
T d1ogqa_          50 YRVNNLDLSGL-NLPKPYPIPSSLANLPYLNFLYIGGINNL-----VG---------PIPPAIAKLTQLHYLYITHTNVS  114 (313)
T ss_dssp             CCEEEEEEECC-CCSSCEECCGGGGGCTTCSEEEEEEETTE-----ES---------CCCGGGGGCTTCSEEEEEEECCE
T ss_pred             EEEEEEECCCC-CCCCCCCCChHHhcCcccccccccccccc-----cc---------ccccccccccccchhhhcccccc
Confidence            47889999987 3332 13667799999999999997 565     55         68889999999999999998866


Q ss_pred             ccCchhhccccccceeeccCCCCCCCCCCCCCCcccccccCceeecCCCCCCCCcccCcccccCCCcc-ccccc--cccc
Q 038150          257 KELPEGIGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGRKACRLESLKNLEHL-QVCGI--SRLG  333 (488)
Q Consensus       257 ~~lp~~l~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L-~~L~~--~~~~  333 (488)
                      ...|..+..+.+|++++++.|.....+|..++++++|+++++.+|...+.    .+.   .+..+..+ +.+.+  +.+.
T Consensus       115 ~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~----ip~---~~~~l~~l~~~l~~~~n~l~  187 (313)
T d1ogqa_         115 GAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGA----IPD---SYGSFSKLFTSMTISRNRLT  187 (313)
T ss_dssp             EECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEE----CCG---GGGCCCTTCCEEECCSSEEE
T ss_pred             ccccccccchhhhcccccccccccccCchhhccCcccceeeccccccccc----ccc---cccccccccccccccccccc
Confidence            66777889999999999999998888999999999999999988876542    222   33333333 22332  2222


Q ss_pred             CCCChhhhhHhhcccCCCCCceeecccCchhhhhhhccccchHHHhhhCCCCCCCCEEEeccccCCCCCchHHHhccCCc
Q 038150          334 DVSDVGEAKRLELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKELEIEYYRGNTVFPSWMTSLTNLK  413 (488)
Q Consensus       334 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~  413 (488)
                      +..      +..+..+.. ..+++..+...            ..++..+..+++|+.+.++++.+.. .+..++.+++|+
T Consensus       188 ~~~------~~~~~~l~~-~~l~l~~~~~~------------~~~~~~~~~~~~l~~l~~~~~~l~~-~~~~~~~~~~L~  247 (313)
T d1ogqa_         188 GKI------PPTFANLNL-AFVDLSRNMLE------------GDASVLFGSDKNTQKIHLAKNSLAF-DLGKVGLSKNLN  247 (313)
T ss_dssp             EEC------CGGGGGCCC-SEEECCSSEEE------------ECCGGGCCTTSCCSEEECCSSEECC-BGGGCCCCTTCC
T ss_pred             ccc------ccccccccc-ccccccccccc------------ccccccccccccccccccccccccc-cccccccccccc
Confidence            211      133444443 35777776654            4456788889999999999998877 556788899999


Q ss_pred             EEeecCCCCCCCCCC-CCCCCCcCeeeecccccceeeCccccCCCCCCCCCCCCCcccccCcccccccccccccC
Q 038150          414 SLDLSSCENCEQLPP-LGKLQSLENLHIWRMESVKRVGDEFLGIESDHHGSSSSSSVIIAFPKLKSLSIEVLREL  487 (488)
Q Consensus       414 ~L~l~~~~~~~~~~~-l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~p~L  487 (488)
                      .|++++|...+.+|. ++++++|++|++++|.--..+|.                  .+.+.+|+.+.+.+.+.|
T Consensus       248 ~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~------------------~~~L~~L~~l~l~~N~~l  304 (313)
T d1ogqa_         248 GLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ------------------GGNLQRFDVSAYANNKCL  304 (313)
T ss_dssp             EEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC------------------STTGGGSCGGGTCSSSEE
T ss_pred             cccCccCeecccCChHHhCCCCCCEEECcCCcccccCCC------------------cccCCCCCHHHhCCCccc
Confidence            999999998878887 99999999999999973335553                  335788998988876643

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.78  E-value=1.4e-18  Score=167.48  Aligned_cols=265  Identities=16%  Similarity=0.205  Sum_probs=178.5

Q ss_pred             ccccceeeEEEEecCCcCccccccccCcceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccCc
Q 038150          154 LDEKVRHLMLIFSKAASLPISTLRVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKL  233 (488)
Q Consensus       154 ~~~~vr~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l  233 (488)
                      ....+++++++.+...+++ .+.++++|++|++.+| .+..  ++. +.++++|+.|+++++..      ..++......
T Consensus        64 ~L~nL~~L~Ls~N~l~~l~-~l~~L~~L~~L~L~~n-~i~~--i~~-l~~l~~L~~L~~~~~~~------~~~~~~~~~~  132 (384)
T d2omza2          64 YLNNLTQINFSNNQLTDIT-PLKNLTKLVDILMNNN-QIAD--ITP-LANLTNLTGLTLFNNQI------TDIDPLKNLT  132 (384)
T ss_dssp             GCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSS-CCCC--CGG-GTTCTTCCEEECCSSCC------CCCGGGTTCT
T ss_pred             cCCCCCEEeCcCCcCCCCc-cccCCccccccccccc-cccc--ccc-ccccccccccccccccc------cccccccccc
Confidence            3456777777777776666 3667777777777776 3432  222 67777777777776663      2111110000


Q ss_pred             -------------------------------------------------------cCchhhhhhccCcEeecCCCCCccc
Q 038150          234 -------------------------------------------------------VLPETLCELYNLEKLDISDCFNLKE  258 (488)
Q Consensus       234 -------------------------------------------------------~lp~~i~~L~~L~~L~l~~~~~~~~  258 (488)
                                                                             ..+.....+++++.+++++|. +..
T Consensus       133 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~l~~n~-i~~  211 (384)
T d2omza2         133 NLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQ-ISD  211 (384)
T ss_dssp             TCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSC-CCC
T ss_pred             cccccccccccccccccccccccccccccccccchhhhhccccccccccccccccccccccccccccceeeccCCc-cCC
Confidence                                                                   223445667788888888865 444


Q ss_pred             CchhhccccccceeeccCCCCCCCCCCCCCCcccccccCceeecCCCCCCCCcccCcccccCCCcccccccccccCCCCh
Q 038150          259 LPEGIGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGRKACRLESLKNLEHLQVCGISRLGDVSDV  338 (488)
Q Consensus       259 lp~~l~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~  338 (488)
                      ++ ..+..++|++|++++|.+ ..++ .+..+++|+.|++.++.+.+         +..+..+++|+.+.+....-... 
T Consensus       212 ~~-~~~~~~~L~~L~l~~n~l-~~~~-~l~~l~~L~~L~l~~n~l~~---------~~~~~~~~~L~~L~l~~~~l~~~-  278 (384)
T d2omza2         212 IT-PLGILTNLDELSLNGNQL-KDIG-TLASLTNLTDLDLANNQISN---------LAPLSGLTKLTELKLGANQISNI-  278 (384)
T ss_dssp             CG-GGGGCTTCCEEECCSSCC-CCCG-GGGGCTTCSEEECCSSCCCC---------CGGGTTCTTCSEEECCSSCCCCC-
T ss_pred             CC-cccccCCCCEEECCCCCC-CCcc-hhhcccccchhccccCccCC---------CCcccccccCCEeeccCcccCCC-
Confidence            43 256677888888888763 3333 46777888888887776554         23355666777766644322111 


Q ss_pred             hhhhHhhcccCCCCCceeecccCchhhhhhhccccchHHHhhhCCCCCCCCEEEeccccCCCCCchHHHhccCCcEEeec
Q 038150          339 GEAKRLELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKELEIEYYRGNTVFPSWMTSLTNLKSLDLS  418 (488)
Q Consensus       339 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~  418 (488)
                           ..+..+..++.+.+..+.+..              +..+..+++++.|++++|.+.+ ++. +..+++|++|+++
T Consensus       279 -----~~~~~~~~l~~l~~~~n~l~~--------------~~~~~~~~~l~~L~ls~n~l~~-l~~-l~~l~~L~~L~L~  337 (384)
T d2omza2         279 -----SPLAGLTALTNLELNENQLED--------------ISPISNLKNLTYLTLYFNNISD-ISP-VSSLTKLQRLFFA  337 (384)
T ss_dssp             -----GGGTTCTTCSEEECCSSCCSC--------------CGGGGGCTTCSEEECCSSCCSC-CGG-GGGCTTCCEEECC
T ss_pred             -----Ccccccccccccccccccccc--------------ccccchhcccCeEECCCCCCCC-Ccc-cccCCCCCEEECC
Confidence                 235667778888888777632              2346678899999999998887 653 7899999999999


Q ss_pred             CCCCCCCCCCCCCCCCcCeeeecccccceeeCccccCCCCCCCCCCCCCcccccCccccccccccc
Q 038150          419 SCENCEQLPPLGKLQSLENLHIWRMESVKRVGDEFLGIESDHHGSSSSSSVIIAFPKLKSLSIEVL  484 (488)
Q Consensus       419 ~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~  484 (488)
                      +|. .+.++.++.+++|++|++++|. ++.++.                  .+.+|+|++|+|++.
T Consensus       338 ~n~-l~~l~~l~~l~~L~~L~l~~N~-l~~l~~------------------l~~l~~L~~L~L~~N  383 (384)
T d2omza2         338 NNK-VSDVSSLANLTNINWLSAGHNQ-ISDLTP------------------LANLTRITQLGLNDQ  383 (384)
T ss_dssp             SSC-CCCCGGGGGCTTCCEEECCSSC-CCBCGG------------------GTTCTTCSEEECCCE
T ss_pred             CCC-CCCChhHcCCCCCCEEECCCCc-CCCChh------------------hccCCCCCEeeCCCC
Confidence            996 4567778899999999998886 655532                  446899999999864

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.75  E-value=2.4e-18  Score=160.52  Aligned_cols=260  Identities=15%  Similarity=0.145  Sum_probs=148.2

Q ss_pred             CCcCccccccccCcceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccCccCchhhhhhccCcE
Q 038150          168 AASLPISTLRVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVLPETLCELYNLEK  247 (488)
Q Consensus       168 ~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~lp~~i~~L~~L~~  247 (488)
                      ...+|..+  .+++++|++++| .+.. ..+..|.++++|++|++++|.+      ..        ..|..+.++++|++
T Consensus        22 L~~lP~~l--~~~l~~L~Ls~N-~i~~-l~~~~f~~l~~L~~L~l~~n~~------~~--------i~~~~f~~l~~L~~   83 (305)
T d1xkua_          22 LEKVPKDL--PPDTALLDLQNN-KITE-IKDGDFKNLKNLHTLILINNKI------SK--------ISPGAFAPLVKLER   83 (305)
T ss_dssp             CCSCCCSC--CTTCCEEECCSS-CCCC-BCTTTTTTCTTCCEEECCSSCC------CC--------BCTTTTTTCTTCCE
T ss_pred             CCccCCCC--CCCCCEEECcCC-cCCC-cChhHhhccccccccccccccc------cc--------cchhhhhCCCccCE
Confidence            35555544  256777777776 4543 3333567777777777777773      31        22445667777777


Q ss_pred             eecCCCCCcccCchhhccccccceeeccCCCCCCCCC-CCCCCcccccccCceeecCCCCCCCCcccCcccccCCCcccc
Q 038150          248 LDISDCFNLKELPEGIGKLINVKHLLNRGTNSLRYMP-VGIGRLTGLRTLGEFHVSAGGGVDGRKACRLESLKNLEHLQV  326 (488)
Q Consensus       248 L~l~~~~~~~~lp~~l~~L~~L~~L~l~~~~~~~~lp-~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~  326 (488)
                      |++++|. ++.+|..+  ...++.|...++... .++ ..+.....+..+....+....     .......+..+++|+.
T Consensus        84 L~l~~n~-l~~l~~~~--~~~l~~L~~~~n~l~-~l~~~~~~~~~~~~~l~~~~n~~~~-----~~~~~~~~~~l~~L~~  154 (305)
T d1xkua_          84 LYLSKNQ-LKELPEKM--PKTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKS-----SGIENGAFQGMKKLSY  154 (305)
T ss_dssp             EECCSSC-CSBCCSSC--CTTCCEEECCSSCCC-BBCHHHHTTCTTCCEEECCSSCCCG-----GGBCTTGGGGCTTCCE
T ss_pred             ecccCCc-cCcCccch--hhhhhhhhccccchh-hhhhhhhhccccccccccccccccc-----cCCCccccccccccCc
Confidence            7777754 56666433  346667777666532 222 223334444444444332221     1222234445555555


Q ss_pred             cccccccCCCChhhhhHhhcccCCCCCceeecccCchhhhhhhccccchHHHhhhCCCCCCCCEEEeccccCCCCCchHH
Q 038150          327 CGISRLGDVSDVGEAKRLELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKELEIEYYRGNTVFPSWM  406 (488)
Q Consensus       327 L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~lp~~~  406 (488)
                      +.+.......       .....+++|+.|+++++...            ...+..+..++.++.|.+++|.+....+.++
T Consensus       155 l~l~~n~l~~-------l~~~~~~~L~~L~l~~n~~~------------~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~  215 (305)
T d1xkua_         155 IRIADTNITT-------IPQGLPPSLTELHLDGNKIT------------KVDAASLKGLNNLAKLGLSFNSISAVDNGSL  215 (305)
T ss_dssp             EECCSSCCCS-------CCSSCCTTCSEEECTTSCCC------------EECTGGGTTCTTCCEEECCSSCCCEECTTTG
T ss_pred             cccccCCccc-------cCcccCCccCEEECCCCcCC------------CCChhHhhccccccccccccccccccccccc
Confidence            5554322111       00112466777777777654            2234556677777888887777776446677


Q ss_pred             HhccCCcEEeecCCCCCCCCCC-CCCCCCcCeeeecccccceeeCccccCCCCCCCCCCCCCcccccCcccccccccccc
Q 038150          407 TSLTNLKSLDLSSCENCEQLPP-LGKLQSLENLHIWRMESVKRVGDEFLGIESDHHGSSSSSSVIIAFPKLKSLSIEVLR  485 (488)
Q Consensus       407 ~~l~~L~~L~l~~~~~~~~~~~-l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~p  485 (488)
                      ..+++|++|++++|.. +.+|. +..+++|++|++++|. +++++.+.+...          ......+.|+.|.|.++|
T Consensus       216 ~~l~~L~~L~L~~N~L-~~lp~~l~~l~~L~~L~Ls~N~-i~~i~~~~f~~~----------~~~~~~~~L~~L~L~~N~  283 (305)
T d1xkua_         216 ANTPHLRELHLNNNKL-VKVPGGLADHKYIQVVYLHNNN-ISAIGSNDFCPP----------GYNTKKASYSGVSLFSNP  283 (305)
T ss_dssp             GGSTTCCEEECCSSCC-SSCCTTTTTCSSCCEEECCSSC-CCCCCTTSSSCS----------SCCTTSCCCSEEECCSSS
T ss_pred             cccccceeeecccccc-cccccccccccCCCEEECCCCc-cCccChhhccCc----------chhcccCCCCEEECCCCc
Confidence            7777888888887754 44554 7777888888887764 777765433210          012345667777777665

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.65  E-value=3.7e-16  Score=145.40  Aligned_cols=242  Identities=13%  Similarity=0.069  Sum_probs=177.0

Q ss_pred             cccceeeEEEEecCCcCcc-ccccccCcceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccCc
Q 038150          155 DEKVRHLMLIFSKAASLPI-STLRVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKL  233 (488)
Q Consensus       155 ~~~vr~l~l~~~~~~~~~~-~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l  233 (488)
                      ...++++++..+....++. .+.++++|++|++.++ .+.. ..+..|.+++.|++|++++|.      +..+|.     
T Consensus        30 ~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n-~~~~-i~~~~f~~l~~L~~L~l~~n~------l~~l~~-----   96 (305)
T d1xkua_          30 PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINN-KISK-ISPGAFAPLVKLERLYLSKNQ------LKELPE-----   96 (305)
T ss_dssp             CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS-CCCC-BCTTTTTTCTTCCEEECCSSC------CSBCCS-----
T ss_pred             CCCCCEEECcCCcCCCcChhHhhccccccccccccc-cccc-cchhhhhCCCccCEecccCCc------cCcCcc-----
Confidence            4678999999999988886 5889999999999998 4444 556678999999999999999      664443     


Q ss_pred             cCchhhhhhccCcEeecCCCCCcccCch-hhccccccceeeccCCCCC--CCCCCCCCCcccccccCceeecCCCCCCCC
Q 038150          234 VLPETLCELYNLEKLDISDCFNLKELPE-GIGKLINVKHLLNRGTNSL--RYMPVGIGRLTGLRTLGEFHVSAGGGVDGR  310 (488)
Q Consensus       234 ~lp~~i~~L~~L~~L~l~~~~~~~~lp~-~l~~L~~L~~L~l~~~~~~--~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~  310 (488)
                          .  ....++.|++.+|. +..++. .+.....++.+....+...  ...+..+..+++|+.+.+.++....     
T Consensus        97 ----~--~~~~l~~L~~~~n~-l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~-----  164 (305)
T d1xkua_          97 ----K--MPKTLQELRVHENE-ITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-----  164 (305)
T ss_dssp             ----S--CCTTCCEEECCSSC-CCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-----
T ss_pred             ----c--hhhhhhhhhccccc-hhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCccc-----
Confidence                2  23578888888865 444443 4566777888887776422  2233456777888888887775543     


Q ss_pred             cccCcccccCCCcccccccccccCCCChhhhhHhhcccCCCCCceeecccCchhhhhhhccccchHHHhhhCCCCCCCCE
Q 038150          311 KACRLESLKNLEHLQVCGISRLGDVSDVGEAKRLELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKE  390 (488)
Q Consensus       311 ~~~~~~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~  390 (488)
                      .+..     .+++|+.|.+.+.....    .....+.+++.++.|.+++|.+...            .+.++..+++|+.
T Consensus       165 l~~~-----~~~~L~~L~l~~n~~~~----~~~~~~~~~~~l~~L~~s~n~l~~~------------~~~~~~~l~~L~~  223 (305)
T d1xkua_         165 IPQG-----LPPSLTELHLDGNKITK----VDAASLKGLNNLAKLGLSFNSISAV------------DNGSLANTPHLRE  223 (305)
T ss_dssp             CCSS-----CCTTCSEEECTTSCCCE----ECTGGGTTCTTCCEEECCSSCCCEE------------CTTTGGGSTTCCE
T ss_pred             cCcc-----cCCccCEEECCCCcCCC----CChhHhhcccccccccccccccccc------------cccccccccccee
Confidence            1111     23556666654432211    1225677889999999999987532            2456778899999


Q ss_pred             EEeccccCCCCCchHHHhccCCcEEeecCCCCCCCCCC--------CCCCCCcCeeeecccc
Q 038150          391 LEIEYYRGNTVFPSWMTSLTNLKSLDLSSCENCEQLPP--------LGKLQSLENLHIWRME  444 (488)
Q Consensus       391 L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~--------l~~l~~L~~L~l~~~~  444 (488)
                      |+|++|.+.. +|.++..+++|++|++++|.+ +.++.        ...+++|+.|.|++|+
T Consensus       224 L~L~~N~L~~-lp~~l~~l~~L~~L~Ls~N~i-~~i~~~~f~~~~~~~~~~~L~~L~L~~N~  283 (305)
T d1xkua_         224 LHLNNNKLVK-VPGGLADHKYIQVVYLHNNNI-SAIGSNDFCPPGYNTKKASYSGVSLFSNP  283 (305)
T ss_dssp             EECCSSCCSS-CCTTTTTCSSCCEEECCSSCC-CCCCTTSSSCSSCCTTSCCCSEEECCSSS
T ss_pred             eecccccccc-cccccccccCCCEEECCCCcc-CccChhhccCcchhcccCCCCEEECCCCc
Confidence            9999999987 899999999999999999974 44431        4567899999999998

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=2.1e-16  Score=145.41  Aligned_cols=120  Identities=17%  Similarity=0.182  Sum_probs=76.6

Q ss_pred             CCcCccccccccCcceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccCccCchhhhhhccCcE
Q 038150          168 AASLPISTLRVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVLPETLCELYNLEK  247 (488)
Q Consensus       168 ~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~lp~~i~~L~~L~~  247 (488)
                      ...+|..+  .+.+++|++++| .++. ..+..|.+++.|++|+++++.      +..++        +.....+..++.
T Consensus        23 L~~iP~~i--p~~~~~L~Ls~N-~i~~-i~~~~f~~l~~L~~L~ls~n~------l~~i~--------~~~~~~~~~~~~   84 (284)
T d1ozna_          23 LQAVPVGI--PAASQRIFLHGN-RISH-VPAASFRACRNLTILWLHSNV------LARID--------AAAFTGLALLEQ   84 (284)
T ss_dssp             CSSCCTTC--CTTCSEEECTTS-CCCE-ECTTTTTTCTTCCEEECCSSC------CCEEC--------TTTTTTCTTCCE
T ss_pred             CCccCCCC--CCCCCEEECcCC-cCCC-CCHHHhhcccccccccccccc------ccccc--------cccccccccccc
Confidence            35555543  256788888886 4554 444567788888888888887      44322        233455677777


Q ss_pred             eecCCCCCcccC-chhhccccccceeeccCCCCCCCCCCCCCCcccccccCceeecCCC
Q 038150          248 LDISDCFNLKEL-PEGIGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFHVSAGG  305 (488)
Q Consensus       248 L~l~~~~~~~~l-p~~l~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~  305 (488)
                      +....+..+..+ |..+.++++|++|+++.|......+..++.+++|+.+++.++.+..
T Consensus        85 l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~  143 (284)
T d1ozna_          85 LDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQA  143 (284)
T ss_dssp             EECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred             cccccccccccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccc
Confidence            776655555555 4456777888888888777443334456667777777777665543

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=1.9e-16  Score=144.22  Aligned_cols=155  Identities=21%  Similarity=0.088  Sum_probs=70.2

Q ss_pred             hhhhhccCcEeecCCCCCcccCchhhccccccceeeccCCCCCCCCCCCCCCcccccccCceeecCCCCCCCCcccCccc
Q 038150          238 TLCELYNLEKLDISDCFNLKELPEGIGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGRKACRLES  317 (488)
Q Consensus       238 ~i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~  317 (488)
                      .+.++++|++|++++|. ++.+| .++.+++|++|++++|. ....+..+.++++|+.|++.++.....       ....
T Consensus        50 ~f~~l~~L~~L~L~~N~-l~~l~-~~~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~L~~L~l~~~~~~~~-------~~~~  119 (266)
T d1p9ag_          50 TLMPYTRLTQLNLDRAE-LTKLQ-VDGTLPVLGTLDLSHNQ-LQSLPLLGQTLPALTVLDVSFNRLTSL-------PLGA  119 (266)
T ss_dssp             GGTTCTTCCEEECTTSC-CCEEE-CCSCCTTCCEEECCSSC-CSSCCCCTTTCTTCCEEECCSSCCCCC-------CSST
T ss_pred             Hhhcccccccccccccc-ccccc-ccccccccccccccccc-cccccccccccccccccccccccccee-------eccc
Confidence            34555555555555543 44444 23455555555555555 233344455555555555554433220       0011


Q ss_pred             ccCCCccccccccc--ccCCCChhhhhHhhcccCCCCCceeecccCchhhhhhhccccchHHHhhhCCCCCCCCEEEecc
Q 038150          318 LKNLEHLQVCGISR--LGDVSDVGEAKRLELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKELEIEY  395 (488)
Q Consensus       318 l~~L~~L~~L~~~~--~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~  395 (488)
                      ...+.+++.+.+..  +..++.      ..+..+++|+.+++++|++...            .+..+..+++|+.|+|++
T Consensus       120 ~~~l~~l~~L~l~~n~l~~l~~------~~~~~l~~l~~l~l~~N~l~~~------------~~~~~~~l~~L~~L~Ls~  181 (266)
T d1p9ag_         120 LRGLGELQELYLKGNELKTLPP------GLLTPTPKLEKLSLANNNLTEL------------PAGLLNGLENLDTLLLQE  181 (266)
T ss_dssp             TTTCTTCCEEECTTSCCCCCCT------TTTTTCTTCCEEECTTSCCSCC------------CTTTTTTCTTCCEEECCS
T ss_pred             cccccccccccccccccceecc------ccccccccchhccccccccccc------------Cccccccccccceeeccc
Confidence            11122222222111  111111      2233445555555555554311            123345555666666666


Q ss_pred             ccCCCCCchHHHhccCCcEEeecCCC
Q 038150          396 YRGNTVFPSWMTSLTNLKSLDLSSCE  421 (488)
Q Consensus       396 ~~~~~~lp~~~~~l~~L~~L~l~~~~  421 (488)
                      |.+.. +|..+..+++|+.|+|++|+
T Consensus       182 N~L~~-lp~~~~~~~~L~~L~L~~Np  206 (266)
T d1p9ag_         182 NSLYT-IPKGFFGSHLLPFAFLHGNP  206 (266)
T ss_dssp             SCCCC-CCTTTTTTCCCSEEECCSCC
T ss_pred             CCCcc-cChhHCCCCCCCEEEecCCC
Confidence            55554 55555555566666665554

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.63  E-value=1.3e-15  Score=146.35  Aligned_cols=238  Identities=18%  Similarity=0.197  Sum_probs=173.6

Q ss_pred             cccccceeeEEEEecCCcCccccccccCcceecccccchhhh--------------------------------------
Q 038150          153 ALDEKVRHLMLIFSKAASLPISTLRVKRMRTLLINDHSLLNA--------------------------------------  194 (488)
Q Consensus       153 ~~~~~vr~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~--------------------------------------  194 (488)
                      ....+++.+.+..+....++ .+..+++|+.|++.++...+.                                      
T Consensus        85 ~~L~~L~~L~L~~n~i~~i~-~l~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  163 (384)
T d2omza2          85 KNLTKLVDILMNNNQIADIT-PLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGN  163 (384)
T ss_dssp             TTCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEE
T ss_pred             cCCccccccccccccccccc-ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            44578889999998887776 477899999999877511000                                      


Q ss_pred             -----------------------hhHHHHHhcCCccceeecCCCcccccccCCcccccccCccCchhhhhhccCcEeecC
Q 038150          195 -----------------------AILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVLPETLCELYNLEKLDIS  251 (488)
Q Consensus       195 -----------------------~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~lp~~i~~L~~L~~L~l~  251 (488)
                                             ......+..++.++.++++++.      +.         .++ ..+..++|++|+++
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~l~~n~------i~---------~~~-~~~~~~~L~~L~l~  227 (384)
T d2omza2         164 QVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQ------IS---------DIT-PLGILTNLDELSLN  227 (384)
T ss_dssp             SCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSC------CC---------CCG-GGGGCTTCCEEECC
T ss_pred             ccchhhhhccccccccccccccccccccccccccccceeeccCCc------cC---------CCC-cccccCCCCEEECC
Confidence                                   0001123456677777777776      33         222 25677899999999


Q ss_pred             CCCCcccCchhhccccccceeeccCCCCCCCCCCCCCCcccccccCceeecCCCCCCCCcccCcccccCCCccccccccc
Q 038150          252 DCFNLKELPEGIGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGRKACRLESLKNLEHLQVCGISR  331 (488)
Q Consensus       252 ~~~~~~~lp~~l~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~  331 (488)
                      +|. +..+| .+..+++|++|++++|.. ..++ .++.+++|++|++..+...+         +..+..+..++.+..+.
T Consensus       228 ~n~-l~~~~-~l~~l~~L~~L~l~~n~l-~~~~-~~~~~~~L~~L~l~~~~l~~---------~~~~~~~~~l~~l~~~~  294 (384)
T d2omza2         228 GNQ-LKDIG-TLASLTNLTDLDLANNQI-SNLA-PLSGLTKLTELKLGANQISN---------ISPLAGLTALTNLELNE  294 (384)
T ss_dssp             SSC-CCCCG-GGGGCTTCSEEECCSSCC-CCCG-GGTTCTTCSEEECCSSCCCC---------CGGGTTCTTCSEEECCS
T ss_pred             CCC-CCCcc-hhhcccccchhccccCcc-CCCC-cccccccCCEeeccCcccCC---------CCccccccccccccccc
Confidence            975 66665 688999999999999984 4444 37889999999998876554         23455666666665543


Q ss_pred             ccCCCChhhhhHhhcccCCCCCceeecccCchhhhhhhccccchHHHhhhCCCCCCCCEEEeccccCCCCCchHHHhccC
Q 038150          332 LGDVSDVGEAKRLELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKELEIEYYRGNTVFPSWMTSLTN  411 (488)
Q Consensus       332 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~lp~~~~~l~~  411 (488)
                      ..- ..     ...+..+++++.|++++|.+.+.              ..+..+++|++|++++|.+.. +| .++.+++
T Consensus       295 n~l-~~-----~~~~~~~~~l~~L~ls~n~l~~l--------------~~l~~l~~L~~L~L~~n~l~~-l~-~l~~l~~  352 (384)
T d2omza2         295 NQL-ED-----ISPISNLKNLTYLTLYFNNISDI--------------SPVSSLTKLQRLFFANNKVSD-VS-SLANLTN  352 (384)
T ss_dssp             SCC-SC-----CGGGGGCTTCSEEECCSSCCSCC--------------GGGGGCTTCCEEECCSSCCCC-CG-GGGGCTT
T ss_pred             ccc-cc-----ccccchhcccCeEECCCCCCCCC--------------cccccCCCCCEEECCCCCCCC-Ch-hHcCCCC
Confidence            322 11     13467789999999999987532              236778999999999998886 66 5889999


Q ss_pred             CcEEeecCCCCCCCCCCCCCCCCcCeeeeccc
Q 038150          412 LKSLDLSSCENCEQLPPLGKLQSLENLHIWRM  443 (488)
Q Consensus       412 L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~  443 (488)
                      |++|++++|.. +.++.++++++|++|+|+++
T Consensus       353 L~~L~l~~N~l-~~l~~l~~l~~L~~L~L~~N  383 (384)
T d2omza2         353 INWLSAGHNQI-SDLTPLANLTRITQLGLNDQ  383 (384)
T ss_dssp             CCEEECCSSCC-CBCGGGTTCTTCSEEECCCE
T ss_pred             CCEEECCCCcC-CCChhhccCCCCCEeeCCCC
Confidence            99999999974 55666899999999999876

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=5.6e-16  Score=141.04  Aligned_cols=197  Identities=18%  Similarity=0.081  Sum_probs=142.9

Q ss_pred             cCCccceeecCCCcccccccCCcccccccCccCchhhhhhccCcEeecCCCCCcccCc-hhhccccccceeeccCCCCCC
Q 038150          203 ELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVLPETLCELYNLEKLDISDCFNLKELP-EGIGKLINVKHLLNRGTNSLR  281 (488)
Q Consensus       203 ~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~lp~~i~~L~~L~~L~l~~~~~~~~lp-~~l~~L~~L~~L~l~~~~~~~  281 (488)
                      +...+...+.+++.      +..+|.         .+.  +++++|+|++|. +..+| ..+.++++|++|++++|. +.
T Consensus         8 ~~~~~~~v~C~~~~------L~~iP~---------~lp--~~l~~L~Ls~N~-i~~l~~~~f~~l~~L~~L~L~~N~-l~   68 (266)
T d1p9ag_           8 KVASHLEVNCDKRN------LTALPP---------DLP--KDTTILHLSENL-LYTFSLATLMPYTRLTQLNLDRAE-LT   68 (266)
T ss_dssp             CSTTCCEEECTTSC------CSSCCS---------CCC--TTCCEEECTTSC-CSEEEGGGGTTCTTCCEEECTTSC-CC
T ss_pred             ccCCCeEEEccCCC------CCeeCc---------CcC--cCCCEEECcCCc-CCCcCHHHhhcccccccccccccc-cc
Confidence            34455666888888      554544         332  479999999976 66676 468999999999999998 45


Q ss_pred             CCCCCCCCcccccccCceeecCCCCCCCCcccCcccccCCCcccccccccccCCCChhhhhHhhcccCCCCCceeecccC
Q 038150          282 YMPVGIGRLTGLRTLGEFHVSAGGGVDGRKACRLESLKNLEHLQVCGISRLGDVSDVGEAKRLELDKKKYLSSLTLWFDK  361 (488)
Q Consensus       282 ~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~  361 (488)
                      .+|. ++.+++|++|++++|.+..     .+   ..+..+++|+.|.+........    ....+..+.+++.|.+++|.
T Consensus        69 ~l~~-~~~l~~L~~L~Ls~N~l~~-----~~---~~~~~l~~L~~L~l~~~~~~~~----~~~~~~~l~~l~~L~l~~n~  135 (266)
T d1p9ag_          69 KLQV-DGTLPVLGTLDLSHNQLQS-----LP---LLGQTLPALTVLDVSFNRLTSL----PLGALRGLGELQELYLKGNE  135 (266)
T ss_dssp             EEEC-CSCCTTCCEEECCSSCCSS-----CC---CCTTTCTTCCEEECCSSCCCCC----CSSTTTTCTTCCEEECTTSC
T ss_pred             cccc-ccccccccccccccccccc-----cc---ccccccccccccccccccccee----eccccccccccccccccccc
Confidence            5654 5789999999999987654     22   2345666777777654432211    12445667888999998887


Q ss_pred             chhhhhhhccccchHHHhhhCCCCCCCCEEEeccccCCCCCchHHHhccCCcEEeecCCCCCCCCCC-CCCCCCcCeeee
Q 038150          362 EEEEEGERRKNEDNQLLLEALRPPLNLKELEIEYYRGNTVFPSWMTSLTNLKSLDLSSCENCEQLPP-LGKLQSLENLHI  440 (488)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~-l~~l~~L~~L~l  440 (488)
                      +...            .+..+..+++|+.|++++|.+....+..+..+++|++|+|++|.+. .+|. +..+++|+.|+|
T Consensus       136 l~~l------------~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L  202 (266)
T d1p9ag_         136 LKTL------------PPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFL  202 (266)
T ss_dssp             CCCC------------CTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEEC
T ss_pred             ccee------------ccccccccccchhcccccccccccCccccccccccceeecccCCCc-ccChhHCCCCCCCEEEe
Confidence            6422            2345667888999999999888744566778899999999988854 6775 777889999999


Q ss_pred             cccc
Q 038150          441 WRME  444 (488)
Q Consensus       441 ~~~~  444 (488)
                      ++|+
T Consensus       203 ~~Np  206 (266)
T d1p9ag_         203 HGNP  206 (266)
T ss_dssp             CSCC
T ss_pred             cCCC
Confidence            8876

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.63  E-value=2.3e-15  Score=133.55  Aligned_cols=190  Identities=19%  Similarity=0.198  Sum_probs=133.6

Q ss_pred             HhcCCccceeecCCCcccccccCCcccccccCccCchhhhhhccCcEeecCCCCCcccCchhhccccccceeeccCCCCC
Q 038150          201 FRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVLPETLCELYNLEKLDISDCFNLKELPEGIGKLINVKHLLNRGTNSL  280 (488)
Q Consensus       201 ~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~lp~~i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~L~l~~~~~~  280 (488)
                      +..+.+|+.|++++|.      +.         .+ +.+.++++|++|++++|. +..++ .+.++++|+++++++|.. 
T Consensus        37 ~~~l~~L~~L~l~~~~------i~---------~l-~~l~~l~~L~~L~ls~n~-i~~~~-~l~~l~~l~~l~~~~n~~-   97 (227)
T d1h6ua2          37 QADLDGITTLSAFGTG------VT---------TI-EGVQYLNNLIGLELKDNQ-ITDLA-PLKNLTKITELELSGNPL-   97 (227)
T ss_dssp             HHHHHTCCEEECTTSC------CC---------CC-TTGGGCTTCCEEECCSSC-CCCCG-GGTTCCSCCEEECCSCCC-
T ss_pred             HHHcCCcCEEECCCCC------CC---------cc-hhHhcCCCCcEeecCCce-eeccc-cccccccccccccccccc-
Confidence            3556778888888887      44         33 357778888888888865 45543 377888888888887763 


Q ss_pred             CCCCCCCCCcccccccCceeecCCCCCCCCcccCcccccCCCcccccccccccCCCChhhhhHhhcccCCCCCceeeccc
Q 038150          281 RYMPVGIGRLTGLRTLGEFHVSAGGGVDGRKACRLESLKNLEHLQVCGISRLGDVSDVGEAKRLELDKKKYLSSLTLWFD  360 (488)
Q Consensus       281 ~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~  360 (488)
                      ..+ .++.++++|+.+.+..+...+         +..+.....+..+.+........      ..+..+++|+.|.++++
T Consensus        98 ~~i-~~l~~l~~L~~l~l~~~~~~~---------~~~~~~~~~~~~l~~~~~~~~~~------~~~~~~~~L~~L~l~~n  161 (227)
T d1h6ua2          98 KNV-SAIAGLQSIKTLDLTSTQITD---------VTPLAGLSNLQVLYLDLNQITNI------SPLAGLTNLQYLSIGNA  161 (227)
T ss_dssp             SCC-GGGTTCTTCCEEECTTSCCCC---------CGGGTTCTTCCEEECCSSCCCCC------GGGGGCTTCCEEECCSS
T ss_pred             ccc-ccccccccccccccccccccc---------cchhccccchhhhhchhhhhchh------hhhcccccccccccccc
Confidence            333 346777888877776654433         23334444555555443332221      34567888999999998


Q ss_pred             CchhhhhhhccccchHHHhhhCCCCCCCCEEEeccccCCCCCchHHHhccCCcEEeecCCCCCCCCCCCCCCCCcCeeee
Q 038150          361 KEEEEEGERRKNEDNQLLLEALRPPLNLKELEIEYYRGNTVFPSWMTSLTNLKSLDLSSCENCEQLPPLGKLQSLENLHI  440 (488)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l  440 (488)
                      .+...              ..+..+++|+.|++++|.+.. +|. ++.+++|++|++++|. ++.++.++.+++|+.|++
T Consensus       162 ~~~~~--------------~~l~~l~~L~~L~Ls~n~l~~-l~~-l~~l~~L~~L~Ls~N~-lt~i~~l~~l~~L~~L~l  224 (227)
T d1h6ua2         162 QVSDL--------------TPLANLSKLTTLKADDNKISD-ISP-LASLPNLIEVHLKNNQ-ISDVSPLANTSNLFIVTL  224 (227)
T ss_dssp             CCCCC--------------GGGTTCTTCCEEECCSSCCCC-CGG-GGGCTTCCEEECTTSC-CCBCGGGTTCTTCCEEEE
T ss_pred             ccccc--------------hhhcccccceecccCCCccCC-Chh-hcCCCCCCEEECcCCc-CCCCcccccCCCCCEEEe
Confidence            76422              346788999999999998876 654 7899999999999996 567777889999999998


Q ss_pred             cc
Q 038150          441 WR  442 (488)
Q Consensus       441 ~~  442 (488)
                      ++
T Consensus       225 sn  226 (227)
T d1h6ua2         225 TN  226 (227)
T ss_dssp             EE
T ss_pred             eC
Confidence            64

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.61  E-value=1.9e-15  Score=134.07  Aligned_cols=191  Identities=16%  Similarity=0.167  Sum_probs=149.0

Q ss_pred             hhhhhccCcEeecCCCCCcccCchhhccccccceeeccCCCCCCCCCCCCCCcccccccCceeecCCCCCCCCcccCccc
Q 038150          238 TLCELYNLEKLDISDCFNLKELPEGIGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGRKACRLES  317 (488)
Q Consensus       238 ~i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~  317 (488)
                      .+..+.+|++|++.+|. +..++ ++..+++|++|++++|.+. .++ .+.++++|+++.+.++....         +..
T Consensus        36 ~~~~l~~L~~L~l~~~~-i~~l~-~l~~l~~L~~L~ls~n~i~-~~~-~l~~l~~l~~l~~~~n~~~~---------i~~  102 (227)
T d1h6ua2          36 TQADLDGITTLSAFGTG-VTTIE-GVQYLNNLIGLELKDNQIT-DLA-PLKNLTKITELELSGNPLKN---------VSA  102 (227)
T ss_dssp             CHHHHHTCCEEECTTSC-CCCCT-TGGGCTTCCEEECCSSCCC-CCG-GGTTCCSCCEEECCSCCCSC---------CGG
T ss_pred             CHHHcCCcCEEECCCCC-CCcch-hHhcCCCCcEeecCCceee-ccc-cccccccccccccccccccc---------ccc
Confidence            46789999999999975 77784 7999999999999999854 333 38889999999988775543         455


Q ss_pred             ccCCCcccccccccccCCCChhhhhHhhcccCCCCCceeecccCchhhhhhhccccchHHHhhhCCCCCCCCEEEecccc
Q 038150          318 LKNLEHLQVCGISRLGDVSDVGEAKRLELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKELEIEYYR  397 (488)
Q Consensus       318 l~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  397 (488)
                      +..+++|+.+.+........      ..+.....+..+.++.+.+...              ..+..+++|+.|.+++|.
T Consensus       103 l~~l~~L~~l~l~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~--------------~~~~~~~~L~~L~l~~n~  162 (227)
T d1h6ua2         103 IAGLQSIKTLDLTSTQITDV------TPLAGLSNLQVLYLDLNQITNI--------------SPLAGLTNLQYLSIGNAQ  162 (227)
T ss_dssp             GTTCTTCCEEECTTSCCCCC------GGGTTCTTCCEEECCSSCCCCC--------------GGGGGCTTCCEEECCSSC
T ss_pred             cccccccccccccccccccc------chhccccchhhhhchhhhhchh--------------hhhccccccccccccccc
Confidence            67788888888766554332      3456678888899888876422              235667899999999998


Q ss_pred             CCCCCchHHHhccCCcEEeecCCCCCCCCCCCCCCCCcCeeeecccccceeeCccccCCCCCCCCCCCCCcccccCcccc
Q 038150          398 GNTVFPSWMTSLTNLKSLDLSSCENCEQLPPLGKLQSLENLHIWRMESVKRVGDEFLGIESDHHGSSSSSSVIIAFPKLK  477 (488)
Q Consensus       398 ~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~L~  477 (488)
                      ... .+ .++.+++|+.|++++|. +.+++.++.+++|++|++++|. ++.++.                  .+.+++|+
T Consensus       163 ~~~-~~-~l~~l~~L~~L~Ls~n~-l~~l~~l~~l~~L~~L~Ls~N~-lt~i~~------------------l~~l~~L~  220 (227)
T d1h6ua2         163 VSD-LT-PLANLSKLTTLKADDNK-ISDISPLASLPNLIEVHLKNNQ-ISDVSP------------------LANTSNLF  220 (227)
T ss_dssp             CCC-CG-GGTTCTTCCEEECCSSC-CCCCGGGGGCTTCCEEECTTSC-CCBCGG------------------GTTCTTCC
T ss_pred             ccc-ch-hhcccccceecccCCCc-cCCChhhcCCCCCCEEECcCCc-CCCCcc------------------cccCCCCC
Confidence            875 44 37899999999999996 5667778899999999999995 777642                  45789999


Q ss_pred             cccccc
Q 038150          478 SLSIEV  483 (488)
Q Consensus       478 ~L~l~~  483 (488)
                      .|+|++
T Consensus       221 ~L~lsn  226 (227)
T d1h6ua2         221 IVTLTN  226 (227)
T ss_dssp             EEEEEE
T ss_pred             EEEeeC
Confidence            998864

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=1.1e-14  Score=133.88  Aligned_cols=210  Identities=18%  Similarity=0.104  Sum_probs=150.2

Q ss_pred             hhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccCccCc-hhhhhhccCcEeecCCCCCcccCchhhcccccc
Q 038150          191 LLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVLP-ETLCELYNLEKLDISDCFNLKELPEGIGKLINV  269 (488)
Q Consensus       191 ~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~lp-~~i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L  269 (488)
                      .+.  .+|..+  ...+++|+|++|.      +.         .+| ..+.++++|++|++++|......+..+..+..+
T Consensus        22 ~L~--~iP~~i--p~~~~~L~Ls~N~------i~---------~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~   82 (284)
T d1ozna_          22 GLQ--AVPVGI--PAASQRIFLHGNR------IS---------HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALL   82 (284)
T ss_dssp             CCS--SCCTTC--CTTCSEEECTTSC------CC---------EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTC
T ss_pred             CCC--ccCCCC--CCCCCEEECcCCc------CC---------CCCHHHhhccccccccccccccccccccccccccccc
Confidence            455  455432  3578999999998      55         344 357888999999999976444444556778888


Q ss_pred             ceeeccCCCCCCCC-CCCCCCcccccccCceeecCCCCCCCCcccCcccccCCCcccccccc--cccCCCChhhhhHhhc
Q 038150          270 KHLLNRGTNSLRYM-PVGIGRLTGLRTLGEFHVSAGGGVDGRKACRLESLKNLEHLQVCGIS--RLGDVSDVGEAKRLEL  346 (488)
Q Consensus       270 ~~L~l~~~~~~~~l-p~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~--~~~~~~~~~~~~~~~l  346 (488)
                      +++....+.....+ |..++++++|++|++..+....       ..........+|+.+.+.  .+..++.      ..+
T Consensus        83 ~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~-------~~~~~~~~~~~L~~l~l~~N~l~~i~~------~~f  149 (284)
T d1ozna_          83 EQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQE-------LGPGLFRGLAALQYLYLQDNALQALPD------DTF  149 (284)
T ss_dssp             CEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCC-------CCTTTTTTCTTCCEEECCSSCCCCCCT------TTT
T ss_pred             cccccccccccccccchhhcccccCCEEecCCccccc-------ccccccchhcccchhhhccccccccCh------hHh
Confidence            88887655545555 4568899999999988876543       112334455666665553  3444432      456


Q ss_pred             ccCCCCCceeecccCchhhhhhhccccchHHHhhhCCCCCCCCEEEeccccCCCCCchHHHhccCCcEEeecCCCCCCCC
Q 038150          347 DKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKELEIEYYRGNTVFPSWMTSLTNLKSLDLSSCENCEQL  426 (488)
Q Consensus       347 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~  426 (488)
                      ..+++|+.|++++|.+...            .+..+..+++|+.+.+++|.+....|.++..+++|++|++++|......
T Consensus       150 ~~~~~L~~L~l~~N~l~~l------------~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~  217 (284)
T d1ozna_         150 RDLGNLTHLFLHGNRISSV------------PERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALP  217 (284)
T ss_dssp             TTCTTCCEEECCSSCCCEE------------CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred             ccccchhhcccccCccccc------------chhhhccccccchhhhhhccccccChhHhhhhhhccccccccccccccc
Confidence            7778899999999887422            2456778889999999998888756888888999999999998876655


Q ss_pred             CC-CCCCCCcCeeeecccc
Q 038150          427 PP-LGKLQSLENLHIWRME  444 (488)
Q Consensus       427 ~~-l~~l~~L~~L~l~~~~  444 (488)
                      +. ++.+++|++|++++++
T Consensus       218 ~~~~~~~~~L~~L~l~~N~  236 (284)
T d1ozna_         218 TEALAPLRALQYLRLNDNP  236 (284)
T ss_dssp             HHHHTTCTTCCEEECCSSC
T ss_pred             ccccccccccCEEEecCCC
Confidence            44 7888999999998876

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.54  E-value=2.2e-14  Score=124.15  Aligned_cols=76  Identities=28%  Similarity=0.376  Sum_probs=55.4

Q ss_pred             cccCCCCCceeecccCchhhhhhhccccchHHHhhhCCCCCCCCEEEeccccCCCCCchHHHhccCCcEEeecCCCCCCC
Q 038150          346 LDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKELEIEYYRGNTVFPSWMTSLTNLKSLDLSSCENCEQ  425 (488)
Q Consensus       346 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~  425 (488)
                      +..+++|+.|++++|.+..              .+.+..+++|+.|.+.+|.+.. ++. ++.+++|++|++++|. .++
T Consensus       124 ~~~l~~L~~L~l~~n~l~~--------------~~~l~~~~~L~~L~l~~n~l~~-l~~-l~~l~~L~~L~ls~N~-i~~  186 (199)
T d2omxa2         124 LKNLTNLNRLELSSNTISD--------------ISALSGLTSLQQLNFSSNQVTD-LKP-LANLTTLERLDISSNK-VSD  186 (199)
T ss_dssp             GTTCTTCSEEECCSSCCCC--------------CGGGTTCTTCSEEECCSSCCCC-CGG-GTTCTTCCEEECCSSC-CCC
T ss_pred             cchhhhhHHhhhhhhhhcc--------------cccccccccccccccccccccC-Ccc-ccCCCCCCEEECCCCC-CCC
Confidence            4556778888888877532              2346677888888888888776 553 7788888888888886 455


Q ss_pred             CCCCCCCCCcCee
Q 038150          426 LPPLGKLQSLENL  438 (488)
Q Consensus       426 ~~~l~~l~~L~~L  438 (488)
                      ++.++++++|++|
T Consensus       187 i~~l~~L~~L~~L  199 (199)
T d2omxa2         187 ISVLAKLTNLESL  199 (199)
T ss_dssp             CGGGGGCTTCSEE
T ss_pred             CccccCCCCCCcC
Confidence            6667777887765

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.53  E-value=3.6e-14  Score=123.83  Aligned_cols=146  Identities=23%  Similarity=0.241  Sum_probs=89.5

Q ss_pred             hhhhccCcEeecCCCCCcccCchhhccccccceeeccCCCCCCCCCCCCCCcccccccCceeecCCCCCCCCcccCcccc
Q 038150          239 LCELYNLEKLDISDCFNLKELPEGIGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGRKACRLESL  318 (488)
Q Consensus       239 i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l  318 (488)
                      +..+++|++|++++|. +..++ .++.+++|++|++++|. ...+| .++++++|+.|++.++....             
T Consensus        64 l~~l~~L~~L~L~~n~-i~~l~-~~~~l~~L~~L~l~~n~-i~~l~-~l~~l~~L~~L~l~~~~~~~-------------  126 (210)
T d1h6ta2          64 IQYLPNVTKLFLNGNK-LTDIK-PLANLKNLGWLFLDENK-VKDLS-SLKDLKKLKSLSLEHNGISD-------------  126 (210)
T ss_dssp             GGGCTTCCEEECCSSC-CCCCG-GGTTCTTCCEEECCSSC-CCCGG-GGTTCTTCCEEECTTSCCCC-------------
T ss_pred             HhhCCCCCEEeCCCcc-ccCcc-ccccCcccccccccccc-ccccc-cccccccccccccccccccc-------------
Confidence            4455555555555543 34443 34555555555555554 22333 24445555555444332211             


Q ss_pred             cCCCcccccccccccCCCChhhhhHhhcccCCCCCceeecccCchhhhhhhccccchHHHhhhCCCCCCCCEEEeccccC
Q 038150          319 KNLEHLQVCGISRLGDVSDVGEAKRLELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKELEIEYYRG  398 (488)
Q Consensus       319 ~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  398 (488)
                                              ...+..+++++.++++++.+...              ..+..+++|+.+.+++|.+
T Consensus       127 ------------------------~~~l~~l~~l~~l~~~~n~l~~~--------------~~~~~l~~L~~l~l~~n~l  168 (210)
T d1h6ta2         127 ------------------------INGLVHLPQLESLYLGNNKITDI--------------TVLSRLTKLDTLSLEDNQI  168 (210)
T ss_dssp             ------------------------CGGGGGCTTCCEEECCSSCCCCC--------------GGGGGCTTCSEEECCSSCC
T ss_pred             ------------------------ccccccccccccccccccccccc--------------ccccccccccccccccccc
Confidence                                    12345567777777777765321              3345677888999988888


Q ss_pred             CCCCchHHHhccCCcEEeecCCCCCCCCCCCCCCCCcCeeeecc
Q 038150          399 NTVFPSWMTSLTNLKSLDLSSCENCEQLPPLGKLQSLENLHIWR  442 (488)
Q Consensus       399 ~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~  442 (488)
                      .. ++. +..+++|+.|++++|. .++++.+..+++|++|+|++
T Consensus       169 ~~-i~~-l~~l~~L~~L~Ls~N~-i~~l~~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         169 SD-IVP-LAGLTKLQNLYLSKNH-ISDLRALAGLKNLDVLELFS  209 (210)
T ss_dssp             CC-CGG-GTTCTTCCEEECCSSC-CCBCGGGTTCTTCSEEEEEE
T ss_pred             cc-ccc-ccCCCCCCEEECCCCC-CCCChhhcCCCCCCEEEccC
Confidence            76 554 7788899999998886 45677788889999988864

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.50  E-value=4.8e-14  Score=123.07  Aligned_cols=166  Identities=19%  Similarity=0.202  Sum_probs=123.1

Q ss_pred             cccCcceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccCccCchhhhhhccCcEeecCCCCCc
Q 038150          177 RVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVLPETLCELYNLEKLDISDCFNL  256 (488)
Q Consensus       177 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~lp~~i~~L~~L~~L~l~~~~~~  256 (488)
                      .+..|+.|++.++ .+ . .++. +..+++|++|++++|.      +.         .++ .++.+++|++|++++|. +
T Consensus        44 ~L~~L~~L~l~~~-~i-~-~l~~-l~~l~~L~~L~L~~n~------i~---------~l~-~~~~l~~L~~L~l~~n~-i  102 (210)
T d1h6ta2          44 ELNSIDQIIANNS-DI-K-SVQG-IQYLPNVTKLFLNGNK------LT---------DIK-PLANLKNLGWLFLDENK-V  102 (210)
T ss_dssp             HHHTCCEEECTTS-CC-C-CCTT-GGGCTTCCEEECCSSC------CC---------CCG-GGTTCTTCCEEECCSSC-C
T ss_pred             HhcCccEEECcCC-CC-C-Cchh-HhhCCCCCEEeCCCcc------cc---------Ccc-ccccCcccccccccccc-c
Confidence            5788999999887 22 3 4443 7899999999999998      54         333 46789999999999975 7


Q ss_pred             ccCchhhccccccceeeccCCCCCCCCCCCCCCcccccccCceeecCCCCCCCCcccCcccccCCCcccccccccccCCC
Q 038150          257 KELPEGIGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGRKACRLESLKNLEHLQVCGISRLGDVS  336 (488)
Q Consensus       257 ~~lp~~l~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~  336 (488)
                      +.+| .+..+++|+.|++.+|.. ..+ ..+.++++|+.+.+..+...+         +                     
T Consensus       103 ~~l~-~l~~l~~L~~L~l~~~~~-~~~-~~l~~l~~l~~l~~~~n~l~~---------~---------------------  149 (210)
T d1h6ta2         103 KDLS-SLKDLKKLKSLSLEHNGI-SDI-NGLVHLPQLESLYLGNNKITD---------I---------------------  149 (210)
T ss_dssp             CCGG-GGTTCTTCCEEECTTSCC-CCC-GGGGGCTTCCEEECCSSCCCC---------C---------------------
T ss_pred             cccc-cccccccccccccccccc-ccc-ccccccccccccccccccccc---------c---------------------
Confidence            7776 689999999999999874 333 457778888888776664332         0                     


Q ss_pred             ChhhhhHhhcccCCCCCceeecccCchhhhhhhccccchHHHhhhCCCCCCCCEEEeccccCCCCCchHHHhccCCcEEe
Q 038150          337 DVGEAKRLELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKELEIEYYRGNTVFPSWMTSLTNLKSLD  416 (488)
Q Consensus       337 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~  416 (488)
                             .....+++|+.+++++|.+..             + ..+..+++|+.|++++|.+.. +| .+..+++|++|+
T Consensus       150 -------~~~~~l~~L~~l~l~~n~l~~-------------i-~~l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~  206 (210)
T d1h6ta2         150 -------TVLSRLTKLDTLSLEDNQISD-------------I-VPLAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLE  206 (210)
T ss_dssp             -------GGGGGCTTCSEEECCSSCCCC-------------C-GGGTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEE
T ss_pred             -------ccccccccccccccccccccc-------------c-ccccCCCCCCEEECCCCCCCC-Ch-hhcCCCCCCEEE
Confidence                   122345667777777777632             1 236778888889988888776 66 477888899888


Q ss_pred             ecC
Q 038150          417 LSS  419 (488)
Q Consensus       417 l~~  419 (488)
                      |++
T Consensus       207 Ls~  209 (210)
T d1h6ta2         207 LFS  209 (210)
T ss_dssp             EEE
T ss_pred             ccC
Confidence            864

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=4.8e-15  Score=135.93  Aligned_cols=186  Identities=16%  Similarity=0.158  Sum_probs=107.5

Q ss_pred             hhccCcEeecCCCCCccc-CchhhccccccceeeccCCCCCCCCCCCCCCcccccccCceeecCCCCCCCCcccCccc-c
Q 038150          241 ELYNLEKLDISDCFNLKE-LPEGIGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGRKACRLES-L  318 (488)
Q Consensus       241 ~L~~L~~L~l~~~~~~~~-lp~~l~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~-l  318 (488)
                      ...+|++||+++|..... ++..+.++++|++|++++|......+..++++++|++|++++|....      ...+.. .
T Consensus        44 ~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~it------d~~l~~l~  117 (284)
T d2astb2          44 SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFS------EFALQTLL  117 (284)
T ss_dssp             CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCC------HHHHHHHH
T ss_pred             cCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCcccccccccc------ccccchhh
Confidence            345677777777653222 34445667777777777776444444556677777777776653222      112222 2


Q ss_pred             cCCCcccccccccccCCCChhhhhHhhcc-cCCCCCceeecccCchhhhhhhccccchHHHhhhCCCCCCCCEEEecccc
Q 038150          319 KNLEHLQVCGISRLGDVSDVGEAKRLELD-KKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKELEIEYYR  397 (488)
Q Consensus       319 ~~L~~L~~L~~~~~~~~~~~~~~~~~~l~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  397 (488)
                      ..+++|+.|+++++..+.+  +.+...+. ..++|+.|+++++...-         ....+......+++|++|++++|.
T Consensus       118 ~~~~~L~~L~ls~c~~~~~--~~~~~~~~~~~~~L~~L~l~~~~~~i---------~~~~l~~l~~~~~~L~~L~L~~~~  186 (284)
T d2astb2         118 SSCSRLDELNLSWCFDFTE--KHVQVAVAHVSETITQLNLSGYRKNL---------QKSDLSTLVRRCPNLVHLDLSDSV  186 (284)
T ss_dssp             HHCTTCCEEECCCCTTCCH--HHHHHHHHHSCTTCCEEECCSCGGGS---------CHHHHHHHHHHCTTCSEEECTTCT
T ss_pred             HHHHhcccccccccccccc--ccchhhhcccccccchhhhccccccc---------cccccccccccccccccccccccc
Confidence            3466677777766655442  11222222 24677888877642110         012233333456778888887764


Q ss_pred             -CCCCCchHHHhccCCcEEeecCCCCCCCC--CCCCCCCCcCeeeeccc
Q 038150          398 -GNTVFPSWMTSLTNLKSLDLSSCENCEQL--PPLGKLQSLENLHIWRM  443 (488)
Q Consensus       398 -~~~~lp~~~~~l~~L~~L~l~~~~~~~~~--~~l~~l~~L~~L~l~~~  443 (488)
                       +....+..+..+++|++|++++|....+-  ..++++|+|+.|++++|
T Consensus       187 ~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         187 MLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             TCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             CCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence             33334556667788888888887655432  23667788888888776

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.48  E-value=1.8e-13  Score=118.34  Aligned_cols=163  Identities=21%  Similarity=0.277  Sum_probs=121.8

Q ss_pred             hcCCccceeecCCCcccccccCCcccccccCccCchhhhhhccCcEeecCCCCCcccCchhhccccccceeeccCCCCCC
Q 038150          202 RELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVLPETLCELYNLEKLDISDCFNLKELPEGIGKLINVKHLLNRGTNSLR  281 (488)
Q Consensus       202 ~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~lp~~i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~L~l~~~~~~~  281 (488)
                      ..+..+++|+++++.      +.         .+ +.+..+++|++|++++|. +..+++ ++++++|++|++++|. ..
T Consensus        37 ~~l~~l~~L~l~~~~------i~---------~l-~~l~~l~nL~~L~Ls~N~-l~~~~~-l~~l~~L~~L~l~~n~-~~   97 (199)
T d2omxa2          37 TDLDQVTTLQADRLG------IK---------SI-DGVEYLNNLTQINFSNNQ-LTDITP-LKNLTKLVDILMNNNQ-IA   97 (199)
T ss_dssp             HHHTTCCEEECTTSC------CC---------CC-TTGGGCTTCCEEECCSSC-CCCCGG-GTTCTTCCEEECCSSC-CC
T ss_pred             HHhcCCCEEECCCCC------CC---------Cc-cccccCCCcCcCcccccc-ccCccc-ccCCcccccccccccc-cc
Confidence            457788999999988      44         22 357788999999999975 666653 8889999999999887 34


Q ss_pred             CCCCCCCCcccccccCceeecCCCCCCCCcccCcccccCCCcccccccccccCCCChhhhhHhhcccCCCCCceeecccC
Q 038150          282 YMPVGIGRLTGLRTLGEFHVSAGGGVDGRKACRLESLKNLEHLQVCGISRLGDVSDVGEAKRLELDKKKYLSSLTLWFDK  361 (488)
Q Consensus       282 ~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~  361 (488)
                      .++ .++++++|++|++.++....         +..+..+++|+.+.+.... +..     ...+..+++|+.|++.+|.
T Consensus        98 ~~~-~l~~l~~L~~L~l~~~~~~~---------~~~~~~l~~L~~L~l~~n~-l~~-----~~~l~~~~~L~~L~l~~n~  161 (199)
T d2omxa2          98 DIT-PLANLTNLTGLTLFNNQITD---------IDPLKNLTNLNRLELSSNT-ISD-----ISALSGLTSLQQLNFSSNQ  161 (199)
T ss_dssp             CCG-GGTTCTTCSEEECCSSCCCC---------CGGGTTCTTCSEEECCSSC-CCC-----CGGGTTCTTCSEEECCSSC
T ss_pred             ccc-cccccccccccccccccccc---------ccccchhhhhHHhhhhhhh-hcc-----ccccccccccccccccccc
Confidence            444 47888899998887775443         3346667778887776543 221     1346788999999999998


Q ss_pred             chhhhhhhccccchHHHhhhCCCCCCCCEEEeccccCCCCCchHHHhccCCcEE
Q 038150          362 EEEEEGERRKNEDNQLLLEALRPPLNLKELEIEYYRGNTVFPSWMTSLTNLKSL  415 (488)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L  415 (488)
                      +...              ..+..+++|+.|++++|.+.+ ++ .++.+++|+.|
T Consensus       162 l~~l--------------~~l~~l~~L~~L~ls~N~i~~-i~-~l~~L~~L~~L  199 (199)
T d2omxa2         162 VTDL--------------KPLANLTTLERLDISSNKVSD-IS-VLAKLTNLESL  199 (199)
T ss_dssp             CCCC--------------GGGTTCTTCCEEECCSSCCCC-CG-GGGGCTTCSEE
T ss_pred             ccCC--------------ccccCCCCCCEEECCCCCCCC-Cc-cccCCCCCCcC
Confidence            7432              347889999999999999876 65 47889999876

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=1.9e-14  Score=131.87  Aligned_cols=223  Identities=17%  Similarity=0.137  Sum_probs=149.2

Q ss_pred             ceeecCCCcccccccCCcccccccCccCchhhhhhc--cCcEeecCCCCCcccCchhhccccccceeeccCCCCCCC-CC
Q 038150          208 RALDFGGSYHSTRLLTPEVPRNIEKLVLPETLCELY--NLEKLDISDCFNLKELPEGIGKLINVKHLLNRGTNSLRY-MP  284 (488)
Q Consensus       208 r~L~Ls~~~~~~~~~~~~lp~~i~~l~lp~~i~~L~--~L~~L~l~~~~~~~~lp~~l~~L~~L~~L~l~~~~~~~~-lp  284 (488)
                      +.|||+++.+                 .|..++.+.  ....+.+..+. ............+|++|++++|..... ++
T Consensus         3 ~~lDLs~~~l-----------------~~~~l~~l~~~~~~~lrl~~~~-~~~~~~~~~~~~~L~~LdLs~~~i~~~~l~   64 (284)
T d2astb2           3 QTLDLTGKNL-----------------HPDVTGRLLSQGVIAFRCPRSF-MDQPLAEHFSPFRVQHMDLSNSVIEVSTLH   64 (284)
T ss_dssp             SEEECTTCBC-----------------CHHHHHHHHHTTCSEEECTTCE-ECSCCCSCCCCBCCCEEECTTCEECHHHHH
T ss_pred             CEEECCCCCC-----------------CchHHHHHHhccceEeeccccc-cccchhhhccCCCCCEEECCCCccCHHHHH
Confidence            5788888763                 234444332  23455555432 222223344567999999999874322 33


Q ss_pred             CCCCCcccccccCceeecCCCCCCCCcccCcccccCCCcccccccccccCCCChhhhhHhhcccCCCCCceeecccC-ch
Q 038150          285 VGIGRLTGLRTLGEFHVSAGGGVDGRKACRLESLKNLEHLQVCGISRLGDVSDVGEAKRLELDKKKYLSSLTLWFDK-EE  363 (488)
Q Consensus       285 ~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~  363 (488)
                      ..+.++++|++|.+.++...+       ..+..+.++++|+.|+++.+..+.+  +.+......+++|+.|+++++. ++
T Consensus        65 ~l~~~c~~L~~L~L~~~~l~~-------~~~~~l~~~~~L~~L~Ls~c~~itd--~~l~~l~~~~~~L~~L~ls~c~~~~  135 (284)
T d2astb2          65 GILSQCSKLQNLSLEGLRLSD-------PIVNTLAKNSNLVRLNLSGCSGFSE--FALQTLLSSCSRLDELNLSWCFDFT  135 (284)
T ss_dssp             HHHTTBCCCSEEECTTCBCCH-------HHHHHHTTCTTCSEEECTTCBSCCH--HHHHHHHHHCTTCCEEECCCCTTCC
T ss_pred             HHHHhCCCcccccccccCCCc-------HHHHHHhcCCCCcCccccccccccc--cccchhhHHHHhccccccccccccc
Confidence            346789999999998886543       4556677889999999988877663  2334445678999999999874 32


Q ss_pred             hhhhhhccccchHHHhhhC-CCCCCCCEEEeccccCC--C-CCchHHHhccCCcEEeecCCCCCCC--CCCCCCCCCcCe
Q 038150          364 EEEGERRKNEDNQLLLEAL-RPPLNLKELEIEYYRGN--T-VFPSWMTSLTNLKSLDLSSCENCEQ--LPPLGKLQSLEN  437 (488)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~--~-~lp~~~~~l~~L~~L~l~~~~~~~~--~~~l~~l~~L~~  437 (488)
                      .           ..+...+ ...++|+.|.++++...  . .+......+|+|++|++++|...++  +..++++|+|++
T Consensus       136 ~-----------~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~  204 (284)
T d2astb2         136 E-----------KHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQH  204 (284)
T ss_dssp             H-----------HHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCE
T ss_pred             c-----------ccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCE
Confidence            1           1222222 23578999999986432  1 1334445789999999999986654  334888999999


Q ss_pred             eeecccccceeeCccccCCCCCCCCCCCCCcccccCccccccccccc
Q 038150          438 LHIWRMESVKRVGDEFLGIESDHHGSSSSSSVIIAFPKLKSLSIEVL  484 (488)
Q Consensus       438 L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~  484 (488)
                      |++++|..+...+...                .+.+|+|+.|++.+|
T Consensus       205 L~L~~C~~i~~~~l~~----------------L~~~~~L~~L~l~~~  235 (284)
T d2astb2         205 LSLSRCYDIIPETLLE----------------LGEIPTLKTLQVFGI  235 (284)
T ss_dssp             EECTTCTTCCGGGGGG----------------GGGCTTCCEEECTTS
T ss_pred             EECCCCCCCChHHHHH----------------HhcCCCCCEEeeeCC
Confidence            9999998665432111                456899999999886

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.38  E-value=1.1e-12  Score=123.90  Aligned_cols=61  Identities=25%  Similarity=0.292  Sum_probs=49.3

Q ss_pred             CCCCCCCEEEeccccCCCCCchHHHhccCCcEEeecCCCCCCCCCCCCCCCCcCeeeecccccceeeCc
Q 038150          383 RPPLNLKELEIEYYRGNTVFPSWMTSLTNLKSLDLSSCENCEQLPPLGKLQSLENLHIWRMESVKRVGD  451 (488)
Q Consensus       383 ~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~  451 (488)
                      ..+++|++|+|++|.+.. +|.   .+++|++|++++|.+ +.+|..  +++|++|++++|+ ++.+|.
T Consensus       281 ~~~~~L~~L~Ls~N~l~~-lp~---~~~~L~~L~L~~N~L-~~l~~~--~~~L~~L~L~~N~-L~~lp~  341 (353)
T d1jl5a_         281 DLPPSLEELNVSNNKLIE-LPA---LPPRLERLIASFNHL-AEVPEL--PQNLKQLHVEYNP-LREFPD  341 (353)
T ss_dssp             CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCC-SCCCCC--CTTCCEEECCSSC-CSSCCC
T ss_pred             ccCCCCCEEECCCCccCc-ccc---ccCCCCEEECCCCcC-Cccccc--cCCCCEEECcCCc-CCCCCc
Confidence            346799999999999887 886   468999999999974 467753  4789999999997 777764

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=2.8e-12  Score=114.39  Aligned_cols=104  Identities=17%  Similarity=0.156  Sum_probs=66.6

Q ss_pred             ceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccCccCch-hhhhhccCcEeecCCCCCcccCc
Q 038150          182 RTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVLPE-TLCELYNLEKLDISDCFNLKELP  260 (488)
Q Consensus       182 r~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~lp~-~i~~L~~L~~L~l~~~~~~~~lp  260 (488)
                      ++++..+. .++  .+|..+  ..++++|++++|.      +.         .+|. .+.++++|++|++++|.....+|
T Consensus        11 ~~i~c~~~-~l~--~iP~~l--~~~l~~L~Ls~n~------i~---------~l~~~~f~~l~~L~~L~ls~n~~~~~i~   70 (242)
T d1xwdc1          11 RVFLCQES-KVT--EIPSDL--PRNAIELRFVLTK------LR---------VIQKGAFSGFGDLEKIEISQNDVLEVIE   70 (242)
T ss_dssp             SEEEEESC-SCS--SCCSCS--CSCCSEEEEESCC------CC---------EECTTTTTTCTTCCEEEEESCTTCCEEC
T ss_pred             CEEEEeCC-CCC--CcCCCC--CCCCCEEECcCCc------CC---------ccChhHhhccchhhhhhhccccccceee
Confidence            56666654 344  344322  2578888888887      55         3433 46778888888888876544443


Q ss_pred             h-hhccccccceeeccCCCCC-CCCCCCCCCcccccccCceeecCCC
Q 038150          261 E-GIGKLINVKHLLNRGTNSL-RYMPVGIGRLTGLRTLGEFHVSAGG  305 (488)
Q Consensus       261 ~-~l~~L~~L~~L~l~~~~~~-~~lp~~i~~L~~L~~L~l~~~~~~~  305 (488)
                      . .+..+++++++.+..+... ...+..+.++++|+++.+.++.+..
T Consensus        71 ~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~  117 (242)
T d1xwdc1          71 ADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKH  117 (242)
T ss_dssp             SSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEEEEESCCCCS
T ss_pred             ccccccccccccccccccccccccccccccccccccccccchhhhcc
Confidence            3 4677888888877654323 3334557788888888887776543

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.26  E-value=7.9e-12  Score=117.81  Aligned_cols=264  Identities=19%  Similarity=0.107  Sum_probs=146.1

Q ss_pred             ccceeeEEEEecCCcCccccccccCcceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccCccC
Q 038150          156 EKVRHLMLIFSKAASLPISTLRVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVL  235 (488)
Q Consensus       156 ~~vr~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~l  235 (488)
                      ..++++++..+....+|..   .++|++|++++| .+.  .+|.   .+.+|+.|++++|.      +..++      .+
T Consensus        38 ~~l~~LdLs~~~L~~lp~~---~~~L~~L~Ls~N-~l~--~lp~---~~~~L~~L~l~~n~------l~~l~------~l   96 (353)
T d1jl5a_          38 RQAHELELNNLGLSSLPEL---PPHLESLVASCN-SLT--ELPE---LPQSLKSLLVDNNN------LKALS------DL   96 (353)
T ss_dssp             HTCSEEECTTSCCSCCCSC---CTTCSEEECCSS-CCS--SCCC---CCTTCCEEECCSSC------CSCCC------SC
T ss_pred             cCCCEEEeCCCCCCCCCCC---CCCCCEEECCCC-CCc--cccc---chhhhhhhhhhhcc------cchhh------hh
Confidence            3567888888877888854   478999999887 555  3453   35678889999888      44332      22


Q ss_pred             chhhhhhccCcEeecCCCCCcccCchhhccccccceeeccCCCCCCCCCCCCCCcccccccCceeecCCCCCCCCcccCc
Q 038150          236 PETLCELYNLEKLDISDCFNLKELPEGIGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGRKACRL  315 (488)
Q Consensus       236 p~~i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~  315 (488)
                      |      +.|++|++++|. +..+| .++.+++|++|+++++.. ...|.....+..+.   +..+...         ..
T Consensus        97 p------~~L~~L~L~~n~-l~~lp-~~~~l~~L~~L~l~~~~~-~~~~~~~~~l~~l~---~~~~~~~---------~~  155 (353)
T d1jl5a_          97 P------PLLEYLGVSNNQ-LEKLP-ELQNSSFLKIIDVDNNSL-KKLPDLPPSLEFIA---AGNNQLE---------EL  155 (353)
T ss_dssp             C------TTCCEEECCSSC-CSSCC-CCTTCTTCCEEECCSSCC-SCCCCCCTTCCEEE---CCSSCCS---------SC
T ss_pred             c------cccccccccccc-ccccc-chhhhccceeeccccccc-cccccccccccchh---hcccccc---------cc
Confidence            2      358999999975 77787 468899999999988873 44454444444333   3222211         12


Q ss_pred             ccccCCCcccccccccccC--CCC------------hhhhhHhhcccCCCCCceeecccCchhhhhhhccc---cch-HH
Q 038150          316 ESLKNLEHLQVCGISRLGD--VSD------------VGEAKRLELDKKKYLSSLTLWFDKEEEEEGERRKN---EDN-QL  377 (488)
Q Consensus       316 ~~l~~L~~L~~L~~~~~~~--~~~------------~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~---~~~-~~  377 (488)
                      ..+..++.++.+.+.....  .+.            ...........++.|+.++++++............   ... ..
T Consensus       156 ~~l~~l~~l~~L~l~~n~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~l~~~~~~~~~  235 (353)
T d1jl5a_         156 PELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNY  235 (353)
T ss_dssp             CCCTTCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCSCCTTCCEEECCSSC
T ss_pred             ccccccccceeccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            2233444444443322111  100            00011223456788889998888754221100000   000 00


Q ss_pred             HhhhCCCCCCCCEEEeccccCCC--CC--------------chHHHhccCCcEEeecCCCCCCCCCCCCCCCCcCeeeec
Q 038150          378 LLEALRPPLNLKELEIEYYRGNT--VF--------------PSWMTSLTNLKSLDLSSCENCEQLPPLGKLQSLENLHIW  441 (488)
Q Consensus       378 ~~~~~~~~~~L~~L~l~~~~~~~--~l--------------p~~~~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~  441 (488)
                      +......++++....+..+....  .+              +.....+++|++|+|++|.. ..+|.  .+++|+.|+++
T Consensus       236 ~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l-~~lp~--~~~~L~~L~L~  312 (353)
T d1jl5a_         236 LTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKL-IELPA--LPPRLERLIAS  312 (353)
T ss_dssp             CSCCCCCCTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCC-SCCCC--CCTTCCEEECC
T ss_pred             ccccccccccccccccccccccccccccchhcccccccCccccccccCCCCCEEECCCCcc-Ccccc--ccCCCCEEECC
Confidence            00000112233333333221111  01              11112357899999999874 45664  36889999998


Q ss_pred             ccccceeeCccccCCCCCCCCCCCCCcccccCcccccccccccc
Q 038150          442 RMESVKRVGDEFLGIESDHHGSSSSSSVIIAFPKLKSLSIEVLR  485 (488)
Q Consensus       442 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~p  485 (488)
                      +|. ++.+|.                    .+++|++|++++++
T Consensus       313 ~N~-L~~l~~--------------------~~~~L~~L~L~~N~  335 (353)
T d1jl5a_         313 FNH-LAEVPE--------------------LPQNLKQLHVEYNP  335 (353)
T ss_dssp             SSC-CSCCCC--------------------CCTTCCEEECCSSC
T ss_pred             CCc-CCcccc--------------------ccCCCCEEECcCCc
Confidence            885 666643                    24578888887765

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=4.2e-12  Score=113.22  Aligned_cols=217  Identities=17%  Similarity=0.142  Sum_probs=135.3

Q ss_pred             eeEEEEecCCcCccccccccCcceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccCccCchhh
Q 038150          160 HLMLIFSKAASLPISTLRVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVLPETL  239 (488)
Q Consensus       160 ~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~lp~~i  239 (488)
                      .+.........+|..+  .+++++|++++| .+.. ..+..|.++++|++|++++|.+     ...+|        +..+
T Consensus        12 ~i~c~~~~l~~iP~~l--~~~l~~L~Ls~n-~i~~-l~~~~f~~l~~L~~L~ls~n~~-----~~~i~--------~~~f   74 (242)
T d1xwdc1          12 VFLCQESKVTEIPSDL--PRNAIELRFVLT-KLRV-IQKGAFSGFGDLEKIEISQNDV-----LEVIE--------ADVF   74 (242)
T ss_dssp             EEEEESCSCSSCCSCS--CSCCSEEEEESC-CCCE-ECTTTTTTCTTCCEEEEESCTT-----CCEEC--------SSSE
T ss_pred             EEEEeCCCCCCcCCCC--CCCCCEEECcCC-cCCc-cChhHhhccchhhhhhhccccc-----cceee--------cccc
Confidence            4455555557777654  268999999997 6775 4555689999999999999984     33221        2345


Q ss_pred             hhhccCcEeecCCCCCcccC-chhhccccccceeeccCCCCCCCCCCCCCCcccccccCceeecCCCCCCCCcccCcccc
Q 038150          240 CELYNLEKLDISDCFNLKEL-PEGIGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFHVSAGGGVDGRKACRLESL  318 (488)
Q Consensus       240 ~~L~~L~~L~l~~~~~~~~l-p~~l~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l  318 (488)
                      .++++++++.+..+..+..+ |..+..+++|++|++.++.+. ..+ ....+.+++.+.........             
T Consensus        75 ~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~-~~~-~~~~~~~l~~l~~~~~~n~~-------------  139 (242)
T d1xwdc1          75 SNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIK-HLP-DVHKIHSLQKVLLDIQDNIN-------------  139 (242)
T ss_dssp             ESCTTCCEEEEECCTTCCEECTTSEECCTTCCEEEEESCCCC-SCC-CCTTTCBSSCEEEEEESCTT-------------
T ss_pred             ccccccccccccccccccccccccccccccccccccchhhhc-ccc-cccccccccccccccccccc-------------
Confidence            67889999988765555544 455789999999999998743 333 24455555555432221110             


Q ss_pred             cCCCcccccccccccCCCChhhhhHhhccc-CCCCCceeecccCchhhhhhhccccchHHHhhhCCCCCCCCEEE-eccc
Q 038150          319 KNLEHLQVCGISRLGDVSDVGEAKRLELDK-KKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKELE-IEYY  396 (488)
Q Consensus       319 ~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~-l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~-l~~~  396 (488)
                           +..+..              ..+.. ...++.|+++++++.             .++.......+++.+. +.++
T Consensus       140 -----l~~i~~--------------~~~~~~~~~l~~L~l~~n~l~-------------~i~~~~~~~~~l~~~~~l~~n  187 (242)
T d1xwdc1         140 -----IHTIER--------------NSFVGLSFESVILWLNKNGIQ-------------EIHNCAFNGTQLDELNLSDNN  187 (242)
T ss_dssp             -----CCEECT--------------TSSTTSBSSCEEEECCSSCCC-------------EECTTTTTTCCEEEEECTTCT
T ss_pred             -----cccccc--------------cccccccccceeeeccccccc-------------ccccccccchhhhcccccccc
Confidence                 000000              11111 135666777777663             2233334455666665 4556


Q ss_pred             cCCCCCchH-HHhccCCcEEeecCCCCCCCCCC--CCCCCCcCeeeecc
Q 038150          397 RGNTVFPSW-MTSLTNLKSLDLSSCENCEQLPP--LGKLQSLENLHIWR  442 (488)
Q Consensus       397 ~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~--l~~l~~L~~L~l~~  442 (488)
                      .+.. +|.+ +..+++|++|+|++|... .+|.  +.++++|+.+++.+
T Consensus       188 ~l~~-l~~~~f~~l~~L~~L~Ls~N~l~-~l~~~~~~~l~~L~~l~~~~  234 (242)
T d1xwdc1         188 NLEE-LPNDVFHGASGPVILDISRTRIH-SLPSYGLENLKKLRARSTYN  234 (242)
T ss_dssp             TCCC-CCTTTTTTSCCCSEEECTTSCCC-CCCSSSCTTCCEEESSSEES
T ss_pred             cccc-ccHHHhcCCCCCCEEECCCCcCC-ccCHHHHcCCcccccCcCCC
Confidence            6666 7664 578899999999998854 5554  66666666666644

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.19  E-value=2.1e-11  Score=95.88  Aligned_cols=79  Identities=24%  Similarity=0.272  Sum_probs=62.7

Q ss_pred             ceeecCCCcccccccCCcccccccCccCchhhhhhccCcEeecCCCCCcccCchhhccccccceeeccCCCCCCCCCCCC
Q 038150          208 RALDFGGSYHSTRLLTPEVPRNIEKLVLPETLCELYNLEKLDISDCFNLKELPEGIGKLINVKHLLNRGTNSLRYMPVGI  287 (488)
Q Consensus       208 r~L~Ls~~~~~~~~~~~~lp~~i~~l~lp~~i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~L~l~~~~~~~~lp~~i  287 (488)
                      |+|+|++|.      +.         .+| .++.+.+|++|++++|. +..+|..++.+++|++|++++|. +..+| ++
T Consensus         1 R~L~Ls~n~------l~---------~l~-~l~~l~~L~~L~ls~N~-l~~lp~~~~~l~~L~~L~l~~N~-i~~l~-~~   61 (124)
T d1dcea3           1 RVLHLAHKD------LT---------VLC-HLEQLLLVTHLDLSHNR-LRALPPALAALRCLEVLQASDNA-LENVD-GV   61 (124)
T ss_dssp             SEEECTTSC------CS---------SCC-CGGGGTTCCEEECCSSC-CCCCCGGGGGCTTCCEEECCSSC-CCCCG-GG
T ss_pred             CEEEcCCCC------CC---------CCc-ccccCCCCCEEECCCCc-cCcchhhhhhhhccccccccccc-ccccC-cc
Confidence            688999998      44         343 47888899999999865 77888888899999999999987 44554 58


Q ss_pred             CCcccccccCceeecCCC
Q 038150          288 GRLTGLRTLGEFHVSAGG  305 (488)
Q Consensus       288 ~~L~~L~~L~l~~~~~~~  305 (488)
                      +++++|++|++.+|.+..
T Consensus        62 ~~l~~L~~L~l~~N~i~~   79 (124)
T d1dcea3          62 ANLPRLQELLLCNNRLQQ   79 (124)
T ss_dssp             TTCSSCCEEECCSSCCCS
T ss_pred             ccccccCeEECCCCccCC
Confidence            888999999888876654

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.13  E-value=2e-11  Score=101.05  Aligned_cols=83  Identities=25%  Similarity=0.270  Sum_probs=45.4

Q ss_pred             hcCCccceeecCCCcccccccCCcccccccCccCchhhhhhccCcEeecCCCCCcccCchhhccccccceeeccCCCCCC
Q 038150          202 RELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVLPETLCELYNLEKLDISDCFNLKELPEGIGKLINVKHLLNRGTNSLR  281 (488)
Q Consensus       202 ~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~lp~~i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~L~l~~~~~~~  281 (488)
                      .+...+|.|+|++|.      +.         .+|.....+++|++|++++|. +..++ .+..+++|++|++++|. ..
T Consensus        15 ~n~~~lr~L~L~~n~------I~---------~i~~~~~~l~~L~~L~Ls~N~-i~~l~-~~~~l~~L~~L~ls~N~-i~   76 (162)
T d1a9na_          15 TNAVRDRELDLRGYK------IP---------VIENLGATLDQFDAIDFSDNE-IRKLD-GFPLLRRLKTLLVNNNR-IC   76 (162)
T ss_dssp             ECTTSCEEEECTTSC------CC---------SCCCGGGGTTCCSEEECCSSC-CCEEC-CCCCCSSCCEEECCSSC-CC
T ss_pred             cCcCcCcEEECCCCC------CC---------ccCccccccccCCEEECCCCC-CCccC-CcccCcchhhhhccccc-cc
Confidence            344556666666666      44         333334456666666666654 45553 45666666666666665 33


Q ss_pred             CCCCC-CCCcccccccCceeec
Q 038150          282 YMPVG-IGRLTGLRTLGEFHVS  302 (488)
Q Consensus       282 ~lp~~-i~~L~~L~~L~l~~~~  302 (488)
                      .+|.+ +..+++|++|++.+|.
T Consensus        77 ~l~~~~~~~l~~L~~L~L~~N~   98 (162)
T d1a9na_          77 RIGEGLDQALPDLTELILTNNS   98 (162)
T ss_dssp             EECSCHHHHCTTCCEEECCSCC
T ss_pred             CCCccccccccccccceecccc
Confidence            33333 2345555555555543

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.13  E-value=1.5e-11  Score=96.79  Aligned_cols=102  Identities=24%  Similarity=0.227  Sum_probs=81.0

Q ss_pred             ceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccCccCchhhhhhccCcEeecCCCCCcccCch
Q 038150          182 RTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVLPETLCELYNLEKLDISDCFNLKELPE  261 (488)
Q Consensus       182 r~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~lp~~i~~L~~L~~L~l~~~~~~~~lp~  261 (488)
                      |+|++++| .++  .++. +..+++|++|++++|.      +.         .+|..++.+++|++|++++|. +..+| 
T Consensus         1 R~L~Ls~n-~l~--~l~~-l~~l~~L~~L~ls~N~------l~---------~lp~~~~~l~~L~~L~l~~N~-i~~l~-   59 (124)
T d1dcea3           1 RVLHLAHK-DLT--VLCH-LEQLLLVTHLDLSHNR------LR---------ALPPALAALRCLEVLQASDNA-LENVD-   59 (124)
T ss_dssp             SEEECTTS-CCS--SCCC-GGGGTTCCEEECCSSC------CC---------CCCGGGGGCTTCCEEECCSSC-CCCCG-
T ss_pred             CEEEcCCC-CCC--CCcc-cccCCCCCEEECCCCc------cC---------cchhhhhhhhccccccccccc-ccccC-
Confidence            67888887 555  3444 7889999999999998      55         677778899999999999965 77776 


Q ss_pred             hhccccccceeeccCCCCCCCCC--CCCCCcccccccCceeecCCC
Q 038150          262 GIGKLINVKHLLNRGTNSLRYMP--VGIGRLTGLRTLGEFHVSAGG  305 (488)
Q Consensus       262 ~l~~L~~L~~L~l~~~~~~~~lp--~~i~~L~~L~~L~l~~~~~~~  305 (488)
                      +++.+++|++|++++|.+ ..+|  ..++.+++|++|++.+|.+..
T Consensus        60 ~~~~l~~L~~L~l~~N~i-~~~~~~~~l~~~~~L~~L~l~~N~i~~  104 (124)
T d1dcea3          60 GVANLPRLQELLLCNNRL-QQSAAIQPLVSCPRLVLLNLQGNSLCQ  104 (124)
T ss_dssp             GGTTCSSCCEEECCSSCC-CSSSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred             ccccccccCeEECCCCcc-CCCCCchhhcCCCCCCEEECCCCcCCc
Confidence            589999999999999984 4444  357888899999988876653

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.02  E-value=1.2e-10  Score=99.43  Aligned_cols=130  Identities=15%  Similarity=0.049  Sum_probs=84.7

Q ss_pred             cceeecCCCcccccccCCcccccccCccCchhhhhhccCcEeecCCCCCcccC-chhhccccccceeeccCCCCCCCCCC
Q 038150          207 LRALDFGGSYHSTRLLTPEVPRNIEKLVLPETLCELYNLEKLDISDCFNLKEL-PEGIGKLINVKHLLNRGTNSLRYMPV  285 (488)
Q Consensus       207 Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~lp~~i~~L~~L~~L~l~~~~~~~~l-p~~l~~L~~L~~L~l~~~~~~~~lp~  285 (488)
                      .++++.+++.      ...+|.         .|.  .++++|+|++|.....+ +..+..+++|++|++++|.+....+.
T Consensus        10 ~~~v~Cs~~~------L~~iP~---------~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~   72 (192)
T d1w8aa_          10 GTTVDCTGRG------LKEIPR---------DIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPN   72 (192)
T ss_dssp             TTEEECTTSC------CSSCCS---------CCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTT
T ss_pred             CCEEEEeCCC------cCccCC---------CCC--CCCCEEEeCCCCCcccccccccCCCceEeeeecccccccccccc
Confidence            3567777777      444443         321  46788888887643333 34567788888888888876555556


Q ss_pred             CCCCcccccccCceeecCCCCCCCCcccCcccccCCCcccccccccccCCCChhhhhHhhcccCCCCCceeecccCchhh
Q 038150          286 GIGRLTGLRTLGEFHVSAGGGVDGRKACRLESLKNLEHLQVCGISRLGDVSDVGEAKRLELDKKKYLSSLTLWFDKEEEE  365 (488)
Q Consensus       286 ~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~  365 (488)
                      .+..+++|++|++++|.+..     .                        +      +..+.++++|+.|++++|.+...
T Consensus        73 ~~~~~~~L~~L~Ls~N~l~~-----l------------------------~------~~~F~~l~~L~~L~L~~N~l~~i  117 (192)
T d1w8aa_          73 AFEGASHIQELQLGENKIKE-----I------------------------S------NKMFLGLHQLKTLNLYDNQISCV  117 (192)
T ss_dssp             TTTTCTTCCEEECCSCCCCE-----E------------------------C------SSSSTTCTTCCEEECCSSCCCEE
T ss_pred             ccccccccceeeeccccccc-----c------------------------C------HHHHhCCCcccccccCCcccccc
Confidence            67788888888887775443     0                        0      12345567777788888776422


Q ss_pred             hhhhccccchHHHhhhCCCCCCCCEEEeccccCCC
Q 038150          366 EGERRKNEDNQLLLEALRPPLNLKELEIEYYRGNT  400 (488)
Q Consensus       366 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  400 (488)
                                  .+..+..+++|++|+|++|.+..
T Consensus       118 ------------~~~~f~~l~~L~~l~L~~N~~~~  140 (192)
T d1w8aa_         118 ------------MPGSFEHLNSLTSLNLASNPFNC  140 (192)
T ss_dssp             ------------CTTSSTTCTTCCEEECTTCCBCC
T ss_pred             ------------CHHHhcCCccccccccccccccc
Confidence                        23456777888888888877654

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.01  E-value=5.3e-11  Score=98.42  Aligned_cols=110  Identities=18%  Similarity=0.174  Sum_probs=67.8

Q ss_pred             cccccCcceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccCccCchhhhhhccCcEeecCCCC
Q 038150          175 TLRVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVLPETLCELYNLEKLDISDCF  254 (488)
Q Consensus       175 ~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~lp~~i~~L~~L~~L~l~~~~  254 (488)
                      +.++.++|.|++++| .+..  ++..+..+++|++|+|++|.      +..         + +.+..+++|++|++++|.
T Consensus        14 ~~n~~~lr~L~L~~n-~I~~--i~~~~~~l~~L~~L~Ls~N~------i~~---------l-~~~~~l~~L~~L~ls~N~   74 (162)
T d1a9na_          14 YTNAVRDRELDLRGY-KIPV--IENLGATLDQFDAIDFSDNE------IRK---------L-DGFPLLRRLKTLLVNNNR   74 (162)
T ss_dssp             EECTTSCEEEECTTS-CCCS--CCCGGGGTTCCSEEECCSSC------CCE---------E-CCCCCCSSCCEEECCSSC
T ss_pred             ccCcCcCcEEECCCC-CCCc--cCccccccccCCEEECCCCC------CCc---------c-CCcccCcchhhhhccccc
Confidence            345667777777776 4442  34445667777777777777      442         2 235566777777777765


Q ss_pred             CcccCchh-hccccccceeeccCCCCCCCCC--CCCCCcccccccCceeecCCC
Q 038150          255 NLKELPEG-IGKLINVKHLLNRGTNSLRYMP--VGIGRLTGLRTLGEFHVSAGG  305 (488)
Q Consensus       255 ~~~~lp~~-l~~L~~L~~L~l~~~~~~~~lp--~~i~~L~~L~~L~l~~~~~~~  305 (488)
                       +..+|.. +..+++|++|++++|.+ ..++  ..+..+++|++|++.+|.+..
T Consensus        75 -i~~l~~~~~~~l~~L~~L~L~~N~i-~~~~~l~~l~~l~~L~~L~l~~N~i~~  126 (162)
T d1a9na_          75 -ICRIGEGLDQALPDLTELILTNNSL-VELGDLDPLASLKSLTYLCILRNPVTN  126 (162)
T ss_dssp             -CCEECSCHHHHCTTCCEEECCSCCC-CCGGGGGGGGGCTTCCEEECCSSGGGG
T ss_pred             -ccCCCccccccccccccceeccccc-cccccccccccccccchhhcCCCcccc
Confidence             5555544 35677777777777763 3333  245667777777777765543

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.01  E-value=1.6e-11  Score=105.29  Aligned_cols=67  Identities=13%  Similarity=0.048  Sum_probs=43.1

Q ss_pred             cCchhhhhhccCcEeecCCCCCcccCchhhccccccceeeccCCCCCCCCCCCCCCcccccccCceeecC
Q 038150          234 VLPETLCELYNLEKLDISDCFNLKELPEGIGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFHVSA  303 (488)
Q Consensus       234 ~lp~~i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~  303 (488)
                      .+|.+++.+++|++|++++|. ++.++ .+..+++|++|++++|. +..+|.....+++|++|++.+|.+
T Consensus        39 ~l~~sl~~L~~L~~L~Ls~n~-I~~i~-~l~~l~~L~~L~Ls~N~-i~~i~~~~~~~~~L~~L~l~~N~i  105 (198)
T d1m9la_          39 KMDATLSTLKACKHLALSTNN-IEKIS-SLSGMENLRILSLGRNL-IKKIENLDAVADTLEELWISYNQI  105 (198)
T ss_dssp             CCHHHHHHTTTCCEEECSEEE-ESCCC-CHHHHTTCCEEECCEEE-ECSCSSHHHHHHHCCEEECSEEEC
T ss_pred             hhhhHHhcccccceeECcccC-CCCcc-cccCCccccChhhcccc-cccccccccccccccccccccccc
Confidence            556677777777777777754 56664 57777777777777776 344554344455666666666643

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.99  E-value=4.3e-12  Score=119.54  Aligned_cols=255  Identities=16%  Similarity=0.087  Sum_probs=146.6

Q ss_pred             cCccccccccCcceecccccchhhh---hhHHHHHhcCCccceeecCCCcccccccCCcccc----cccCccCchhhhhh
Q 038150          170 SLPISTLRVKRMRTLLINDHSLLNA---AILEELFRELTSLRALDFGGSYHSTRLLTPEVPR----NIEKLVLPETLCEL  242 (488)
Q Consensus       170 ~~~~~~~~~~~Lr~L~l~~~~~~~~---~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~----~i~~l~lp~~i~~L  242 (488)
                      .+...+.....++.|++++| .++.   ..+...+...+.|+.|+++++.      ......    .+.  .+...+..+
T Consensus        22 ~l~~~L~~~~~l~~L~Ls~n-~i~~~~~~~l~~~l~~~~~L~~l~l~~~~------~~~~~~~~~~~~~--~l~~~l~~~   92 (344)
T d2ca6a1          22 SVFAVLLEDDSVKEIVLSGN-TIGTEAARWLSENIASKKDLEIAEFSDIF------TGRVKDEIPEALR--LLLQALLKC   92 (344)
T ss_dssp             TTSHHHHHCSCCCEEECTTS-EECHHHHHHHHHTTTTCTTCCEEECCSCC------TTSCGGGSHHHHH--HHHHHHTTC
T ss_pred             HHHHHHhhCCCCCEEECcCC-cCCHHHHHHHHHHHHhCCCCCEEECCCCc------ccccccccchHHH--HHHHHHhhC
Confidence            44445667899999999997 4433   1244445677899999999876      322211    110  233445567


Q ss_pred             ccCcEeecCCCCCccc----CchhhccccccceeeccCCCCCCCCC----CC---------CCCcccccccCceeecCCC
Q 038150          243 YNLEKLDISDCFNLKE----LPEGIGKLINVKHLLNRGTNSLRYMP----VG---------IGRLTGLRTLGEFHVSAGG  305 (488)
Q Consensus       243 ~~L~~L~l~~~~~~~~----lp~~l~~L~~L~~L~l~~~~~~~~lp----~~---------i~~L~~L~~L~l~~~~~~~  305 (488)
                      ++|+.|++++|.....    +...+...++|++|++++|.+...-.    ..         ....+.|+.+.+..+.+..
T Consensus        93 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~  172 (344)
T d2ca6a1          93 PKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLEN  172 (344)
T ss_dssp             TTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTG
T ss_pred             CCcccccccccccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccc
Confidence            8999999999863332    44556678899999999886421100    00         1234566677666655432


Q ss_pred             CCCCCcccCcccccCCCcccccccccccCCCC-hhhhhHhhcccCCCCCceeecccCchhhhhhhccccchHHHhhhCCC
Q 038150          306 GVDGRKACRLESLKNLEHLQVCGISRLGDVSD-VGEAKRLELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRP  384 (488)
Q Consensus       306 ~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~-~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  384 (488)
                      ..   .......+...+.|+.+.+....-... ....+...+..+++|+.|++++|.+....        ...+...+..
T Consensus       173 ~~---~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g--------~~~L~~~l~~  241 (344)
T d2ca6a1         173 GS---MKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLG--------SSALAIALKS  241 (344)
T ss_dssp             GG---HHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHH--------HHHHHHHGGG
T ss_pred             cc---cccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccc--------cccccccccc
Confidence            10   111112234455666666654331111 11223445667777888888877764321        1445566667


Q ss_pred             CCCCCEEEeccccCCCCCchHH----Hh--ccCCcEEeecCCCCCCC----CCC-C-CCCCCcCeeeecccc
Q 038150          385 PLNLKELEIEYYRGNTVFPSWM----TS--LTNLKSLDLSSCENCEQ----LPP-L-GKLQSLENLHIWRME  444 (488)
Q Consensus       385 ~~~L~~L~l~~~~~~~~lp~~~----~~--l~~L~~L~l~~~~~~~~----~~~-l-~~l~~L~~L~l~~~~  444 (488)
                      .++|+.|.|++|.+...-...+    ..  .++|++|+|++|.....    +.. + .++++|++|++++|.
T Consensus       242 ~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~  313 (344)
T d2ca6a1         242 WPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNR  313 (344)
T ss_dssp             CTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred             cccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCc
Confidence            7788888888776653111112    11  35678888887764322    111 2 246778888887765

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.99  E-value=5.3e-11  Score=101.72  Aligned_cols=127  Identities=18%  Similarity=0.170  Sum_probs=91.2

Q ss_pred             eEEEEecCCcCccccccccCcceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccCccCchhhh
Q 038150          161 LMLIFSKAASLPISTLRVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVLPETLC  240 (488)
Q Consensus       161 l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~lp~~i~  240 (488)
                      +.........+|..+  .+++++|++++| .+.....+..|..+++|+.|+|++|.+      ..        ..+..+.
T Consensus        13 v~Cs~~~L~~iP~~l--p~~l~~L~Ls~N-~i~~~~~~~~f~~l~~L~~L~L~~N~i------~~--------~~~~~~~   75 (192)
T d1w8aa_          13 VDCTGRGLKEIPRDI--PLHTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRNQL------TG--------IEPNAFE   75 (192)
T ss_dssp             EECTTSCCSSCCSCC--CTTCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSSCC------CC--------BCTTTTT
T ss_pred             EEEeCCCcCccCCCC--CCCCCEEEeCCC-CCcccccccccCCCceEeeeecccccc------cc--------ccccccc
Confidence            333333446667654  368899999997 453213345578899999999999984      32        3345677


Q ss_pred             hhccCcEeecCCCCCcccCch-hhccccccceeeccCCCCCCCCCCCCCCcccccccCceeecCCC
Q 038150          241 ELYNLEKLDISDCFNLKELPE-GIGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFHVSAGG  305 (488)
Q Consensus       241 ~L~~L~~L~l~~~~~~~~lp~-~l~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~  305 (488)
                      .+++|++|++++|. +..+|. .+.++++|++|++++|.+...-|..+..+++|++|++.+|....
T Consensus        76 ~~~~L~~L~Ls~N~-l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~  140 (192)
T d1w8aa_          76 GASHIQELQLGENK-IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC  140 (192)
T ss_dssp             TCTTCCEEECCSCC-CCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred             cccccceeeecccc-ccccCHHHHhCCCcccccccCCccccccCHHHhcCCccccccccccccccc
Confidence            88999999999976 556554 57889999999999998544334557889999999998876553

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.97  E-value=3.3e-11  Score=113.34  Aligned_cols=251  Identities=14%  Similarity=0.071  Sum_probs=159.2

Q ss_pred             cccccceeeEEEEecC-----CcCccccccccCcceecccccch--hh------hhhHHHHHhcCCccceeecCCCcccc
Q 038150          153 ALDEKVRHLMLIFSKA-----ASLPISTLRVKRMRTLLINDHSL--LN------AAILEELFRELTSLRALDFGGSYHST  219 (488)
Q Consensus       153 ~~~~~vr~l~l~~~~~-----~~~~~~~~~~~~Lr~L~l~~~~~--~~------~~~~~~~~~~l~~Lr~L~Ls~~~~~~  219 (488)
                      .....++.+.++++..     ..+...+...++|+.|.+.++..  ..      ...+...+..+++|+.|+|++|.+  
T Consensus        28 ~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i--  105 (344)
T d2ca6a1          28 LEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAF--  105 (344)
T ss_dssp             HHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCC--
T ss_pred             hhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccccccc--
Confidence            3456778888876644     22334556779999999986521  11      013445567789999999999984  


Q ss_pred             cccCCcccccccCccCchhhhhhccCcEeecCCCCCccc----Cch---------hhccccccceeeccCCCCCC----C
Q 038150          220 RLLTPEVPRNIEKLVLPETLCELYNLEKLDISDCFNLKE----LPE---------GIGKLINVKHLLNRGTNSLR----Y  282 (488)
Q Consensus       220 ~~~~~~lp~~i~~l~lp~~i~~L~~L~~L~l~~~~~~~~----lp~---------~l~~L~~L~~L~l~~~~~~~----~  282 (488)
                         ...-..     .+...+...++|++|++++|.....    +..         .....+.|+.+.++++....    .
T Consensus       106 ---~~~~~~-----~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~  177 (344)
T d2ca6a1         106 ---GPTAQE-----PLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKE  177 (344)
T ss_dssp             ---CTTTHH-----HHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHH
T ss_pred             ---cccccc-----chhhhhcccccchheecccccccccccccccccccccccccccccCcccceeeccccccccccccc
Confidence               221011     3455667789999999999753211    101         11345788999998876432    1


Q ss_pred             CCCCCCCcccccccCceeecCCCCCCCCccc-CcccccCCCcccccccccccCCCChhhhhHhhcccCCCCCceeecccC
Q 038150          283 MPVGIGRLTGLRTLGEFHVSAGGGVDGRKAC-RLESLKNLEHLQVCGISRLGDVSDVGEAKRLELDKKKYLSSLTLWFDK  361 (488)
Q Consensus       283 lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~~-~~~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~  361 (488)
                      +...+...++|++|++..|.+....   ... ....+...++|+.|+++...-.......+...+..+++|+.|++++|.
T Consensus       178 l~~~l~~~~~L~~L~L~~n~i~~~g---~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~  254 (344)
T d2ca6a1         178 WAKTFQSHRLLHTVKMVQNGIRPEG---IEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCL  254 (344)
T ss_dssp             HHHHHHHCTTCCEEECCSSCCCHHH---HHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCC
T ss_pred             ccchhhhhhhhcccccccccccccc---cccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCc
Confidence            2223456788999999887665310   011 123456778888888865432122234566778889999999999998


Q ss_pred             chhhhhhhccccchHHHhhhCCC--CCCCCEEEeccccCCCC----CchHHH-hccCCcEEeecCCCCCC
Q 038150          362 EEEEEGERRKNEDNQLLLEALRP--PLNLKELEIEYYRGNTV----FPSWMT-SLTNLKSLDLSSCENCE  424 (488)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~~--~~~L~~L~l~~~~~~~~----lp~~~~-~l~~L~~L~l~~~~~~~  424 (488)
                      +....        ...+.+.+..  .+.|+.|++++|.+...    +...+. .+++|++|+|++|....
T Consensus       255 i~~~g--------~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~  316 (344)
T d2ca6a1         255 LSARG--------AAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE  316 (344)
T ss_dssp             CCHHH--------HHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred             cCchh--------hHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCC
Confidence            86432        1344444433  46799999999986531    233332 57899999999988644

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.89  E-value=1.9e-11  Score=119.45  Aligned_cols=111  Identities=13%  Similarity=0.144  Sum_probs=75.6

Q ss_pred             cceeeEEEEecCC--cCccccccccCcceecccccchhhh---hhHHHHHhcCCccceeecCCCcccccccCCccccccc
Q 038150          157 KVRHLMLIFSKAA--SLPISTLRVKRMRTLLINDHSLLNA---AILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIE  231 (488)
Q Consensus       157 ~vr~l~l~~~~~~--~~~~~~~~~~~Lr~L~l~~~~~~~~---~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~  231 (488)
                      .++.+++..+...  .+...+..++++++|.+.+| .++.   ..+...+..+++|++|||++|.      +++..-  .
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~-~i~~~~~~~l~~~L~~~~~L~~LdLs~N~------i~~~~~--~   73 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDC-GLTEARCKDISSALRVNPALAELNLRSNE------LGDVGV--H   73 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESS-CCCHHHHHHHHHHHHTCTTCCEEECTTCC------CHHHHH--H
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCC-CCCHHHHHHHHHHHhcCCCCCEEECcCCc------CChHHH--H
Confidence            5677888777663  33445667899999999998 3442   2456667899999999999998      321000  0


Q ss_pred             CccCchhhh-hhccCcEeecCCCCCcc----cCchhhccccccceeeccCCC
Q 038150          232 KLVLPETLC-ELYNLEKLDISDCFNLK----ELPEGIGKLINVKHLLNRGTN  278 (488)
Q Consensus       232 ~l~lp~~i~-~L~~L~~L~l~~~~~~~----~lp~~l~~L~~L~~L~l~~~~  278 (488)
                        .+...+. ...+|++|++++|....    .++..+..+++|++|++++|.
T Consensus        74 --~l~~~l~~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~  123 (460)
T d1z7xw1          74 --CVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL  123 (460)
T ss_dssp             --HHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSB
T ss_pred             --HHHHHHhcCCCCCCEEECCCCCccccccccccchhhcccccccccccccc
Confidence              1111111 22479999999986322    255677889999999999875

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.82  E-value=1.4e-10  Score=99.38  Aligned_cols=62  Identities=19%  Similarity=0.169  Sum_probs=29.1

Q ss_pred             hhhhccCcEeecCCCCCcccCchhhccccccceeeccCCCCCCCCCCCCCCcccccccCceeecC
Q 038150          239 LCELYNLEKLDISDCFNLKELPEGIGKLINVKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFHVSA  303 (488)
Q Consensus       239 i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~  303 (488)
                      +..+++|++|++++|. +..+|.....+++|++|++++|.+ ..+ ..+.++++|++|++.+|.+
T Consensus        66 l~~l~~L~~L~Ls~N~-i~~i~~~~~~~~~L~~L~l~~N~i-~~l-~~~~~l~~L~~L~L~~N~i  127 (198)
T d1m9la_          66 LSGMENLRILSLGRNL-IKKIENLDAVADTLEELWISYNQI-ASL-SGIEKLVNLRVLYMSNNKI  127 (198)
T ss_dssp             HHHHTTCCEEECCEEE-ECSCSSHHHHHHHCCEEECSEEEC-CCH-HHHHHHHHSSEEEESEEEC
T ss_pred             ccCCccccChhhcccc-cccccccccccccccccccccccc-ccc-ccccccccccccccccchh
Confidence            4455555555555543 444443333444555555555542 222 2244455555555555443

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.64  E-value=3.2e-09  Score=103.12  Aligned_cols=115  Identities=17%  Similarity=0.120  Sum_probs=73.0

Q ss_pred             CcccccccccccCCCChhhhhHhhcccCCCCCceeecccCchhhhhhhccccchHHHhhhCC-CCCCCCEEEeccccCCC
Q 038150          322 EHLQVCGISRLGDVSDVGEAKRLELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALR-PPLNLKELEIEYYRGNT  400 (488)
Q Consensus       322 ~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~  400 (488)
                      ..|+.+.+....-.......+...+....+|+.|++++|.+....        ...+++.+. ..+.|+.|+|++|.+..
T Consensus       312 ~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g--------~~~l~~~l~~~~~~L~~L~Ls~n~i~~  383 (460)
T d1z7xw1         312 CQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAG--------VRELCQGLGQPGSVLRVLWLADCDVSD  383 (460)
T ss_dssp             CCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHH--------HHHHHHHHTSTTCCCCEEECTTSCCCH
T ss_pred             cccccccccccchhhhhhhhcccccccccchhhhheeeecccCcc--------cchhhhhhhcccCCCCEEECCCCCCCh
Confidence            456666555443222233344455566788999999999875431        144555554 46689999999998764


Q ss_pred             C----CchHHHhccCCcEEeecCCCCCCC----CCC-CC-CCCCcCeeeecccc
Q 038150          401 V----FPSWMTSLTNLKSLDLSSCENCEQ----LPP-LG-KLQSLENLHIWRME  444 (488)
Q Consensus       401 ~----lp~~~~~l~~L~~L~l~~~~~~~~----~~~-l~-~l~~L~~L~l~~~~  444 (488)
                      .    ++..+...++|++|+|++|.....    +.. +. ....|+.|.+.++.
T Consensus       384 ~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~  437 (460)
T d1z7xw1         384 SSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIY  437 (460)
T ss_dssp             HHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCC
T ss_pred             HHHHHHHHHHhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCC
Confidence            1    344456779999999999875432    111 22 23479999998876

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.52  E-value=2.7e-08  Score=81.11  Aligned_cols=94  Identities=19%  Similarity=0.147  Sum_probs=46.4

Q ss_pred             CcCccccccccCcceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccCccCchhhhhhccCcEe
Q 038150          169 ASLPISTLRVKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVLPETLCELYNLEKL  248 (488)
Q Consensus       169 ~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~lp~~i~~L~~L~~L  248 (488)
                      .++|..+..+++|+.|++.+++.+.. ..+..|.++++|+.|++++|.      +..++        |..+..+++|++|
T Consensus        21 ~~~p~~l~~l~~l~~L~l~~n~~l~~-i~~~~f~~l~~L~~L~Ls~N~------l~~i~--------~~~f~~l~~L~~L   85 (156)
T d2ifga3          21 LDSLHHLPGAENLTELYIENQQHLQH-LELRDLRGLGELRNLTIVKSG------LRFVA--------PDAFHFTPRLSRL   85 (156)
T ss_dssp             CTTTTTSCSCSCCSEEECCSCSSCCE-ECGGGSCSCCCCSEEECCSSC------CCEEC--------TTGGGSCSCCCEE
T ss_pred             ccCcccccCccccCeeecCCCccccc-cCchhhccccccCcceeeccc------cCCcc--------cccccccccccce
Confidence            34444444555556665554433433 233345555556666665555      33211        2334455555555


Q ss_pred             ecCCCCCcccCchhhccccccceeeccCCC
Q 038150          249 DISDCFNLKELPEGIGKLINVKHLLNRGTN  278 (488)
Q Consensus       249 ~l~~~~~~~~lp~~l~~L~~L~~L~l~~~~  278 (488)
                      +|++|. +..+|.++....+|++|++++|.
T Consensus        86 ~Ls~N~-l~~l~~~~~~~~~l~~L~L~~Np  114 (156)
T d2ifga3          86 NLSFNA-LESLSWKTVQGLSLQELVLSGNP  114 (156)
T ss_dssp             ECCSSC-CSCCCSTTTCSCCCCEEECCSSC
T ss_pred             eccCCC-CcccChhhhccccccccccCCCc
Confidence            555543 44555444444455555555554

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.29  E-value=4.5e-07  Score=73.62  Aligned_cols=90  Identities=21%  Similarity=0.043  Sum_probs=68.2

Q ss_pred             hHhhcccCCCCCceeecccC-chhhhhhhccccchHHHhhhCCCCCCCCEEEeccccCCCCCchHHHhccCCcEEeecCC
Q 038150          342 KRLELDKKKYLSSLTLWFDK-EEEEEGERRKNEDNQLLLEALRPPLNLKELEIEYYRGNTVFPSWMTSLTNLKSLDLSSC  420 (488)
Q Consensus       342 ~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~  420 (488)
                      .+..+..+++|+.|++.+++ +...            -+..+..+++|+.|++++|.+...-|..+..+++|++|+|++|
T Consensus        23 ~p~~l~~l~~l~~L~l~~n~~l~~i------------~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N   90 (156)
T d2ifga3          23 SLHHLPGAENLTELYIENQQHLQHL------------ELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN   90 (156)
T ss_dssp             TTTTSCSCSCCSEEECCSCSSCCEE------------CGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred             CcccccCccccCeeecCCCcccccc------------CchhhccccccCcceeeccccCCcccccccccccccceeccCC
Confidence            45567778899999997664 5321            1356888999999999999988844677888999999999999


Q ss_pred             CCCCCCCC-CCCCCCcCeeeecccc
Q 038150          421 ENCEQLPP-LGKLQSLENLHIWRME  444 (488)
Q Consensus       421 ~~~~~~~~-l~~l~~L~~L~l~~~~  444 (488)
                      ... .+|. .-...+|+.|+|++++
T Consensus        91 ~l~-~l~~~~~~~~~l~~L~L~~Np  114 (156)
T d2ifga3          91 ALE-SLSWKTVQGLSLQELVLSGNP  114 (156)
T ss_dssp             CCS-CCCSTTTCSCCCCEEECCSSC
T ss_pred             CCc-ccChhhhccccccccccCCCc
Confidence            855 4554 4444579999999886

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.96  E-value=4.2e-06  Score=68.19  Aligned_cols=107  Identities=17%  Similarity=0.084  Sum_probs=72.2

Q ss_pred             ccCcceecccccchhhhhhHHHHHhcCCccceeecCCCcccccccCCcccccccCccCchhhhhhccCcEeecCCCCCcc
Q 038150          178 VKRMRTLLINDHSLLNAAILEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVLPETLCELYNLEKLDISDCFNLK  257 (488)
Q Consensus       178 ~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~lp~~i~~L~~L~~L~l~~~~~~~  257 (488)
                      +..+..+....+  ... .++..+..++.|++|+|++|.      +..++      .++..+..+++|++|++++|. ++
T Consensus        41 ~~~~~~l~~~~~--~~~-~l~~~~~~~~~L~~L~Ls~N~------i~~l~------~~~~~~~~l~~L~~L~Ls~N~-i~  104 (162)
T d1koha1          41 QNIDVVLNRRSS--MAA-TLRIIEENIPELLSLNLSNNR------LYRLD------DMSSIVQKAPNLKILNLSGNE-LK  104 (162)
T ss_dssp             TTCCCCTTSHHH--HHH-HHHHHHHHCTTCCCCCCCSSC------CCCCS------GGGTHHHHSTTCCCCCCTTSC-CC
T ss_pred             ccchhhcchhhh--Hhh-hhHHHHHhCCCCCEeeCCCcc------ccCCc------hhHHHHhhCCcccccccccCc-cc
Confidence            344444444442  222 456666789999999999999      54332      345667889999999999976 77


Q ss_pred             cCch-hhccccccceeeccCCCCCCCCCC-------CCCCcccccccCcee
Q 038150          258 ELPE-GIGKLINVKHLLNRGTNSLRYMPV-------GIGRLTGLRTLGEFH  300 (488)
Q Consensus       258 ~lp~-~l~~L~~L~~L~l~~~~~~~~lp~-------~i~~L~~L~~L~l~~  300 (488)
                      .++. ......+|++|++.+|.+......       .+..+++|+.|+...
T Consensus       105 ~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i~~~~P~L~~LDg~~  155 (162)
T d1koha1         105 SERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIRERFPKLLRLDGHE  155 (162)
T ss_dssp             CGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHHHTTSTTCCEETTEE
T ss_pred             cchhhhhhhccccceeecCCCCcCcCcccchhHHHHHHHHCCCCCEECcCC
Confidence            6654 223446789999999985443322       145688888887543

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.19  E-value=4.1e-05  Score=62.06  Aligned_cols=83  Identities=16%  Similarity=0.018  Sum_probs=59.7

Q ss_pred             cccCCCCCceeecccCchhhhhhhccccchHHHhhhCCCCCCCCEEEeccccCCCCCch-HHHhccCCcEEeecCCCCCC
Q 038150          346 LDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKELEIEYYRGNTVFPS-WMTSLTNLKSLDLSSCENCE  424 (488)
Q Consensus       346 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~  424 (488)
                      ...+++|+.|++++|+++..          ..++..+..+++|+.|++++|.+.. ++. ......+|+.|++++|+...
T Consensus        61 ~~~~~~L~~L~Ls~N~i~~l----------~~~~~~~~~l~~L~~L~Ls~N~i~~-l~~l~~l~~~~L~~L~L~~Npl~~  129 (162)
T d1koha1          61 EENIPELLSLNLSNNRLYRL----------DDMSSIVQKAPNLKILNLSGNELKS-ERELDKIKGLKLEELWLDGNSLSD  129 (162)
T ss_dssp             HHHCTTCCCCCCCSSCCCCC----------SGGGTHHHHSTTCCCCCCTTSCCCC-GGGHHHHTTCCCSSCCCTTSTTSS
T ss_pred             HHhCCCCCEeeCCCccccCC----------chhHHHHhhCCcccccccccCcccc-chhhhhhhccccceeecCCCCcCc
Confidence            34678899999999988543          2334445567899999999999887 554 23345678999999998765


Q ss_pred             CCCC--------CCCCCCcCeee
Q 038150          425 QLPP--------LGKLQSLENLH  439 (488)
Q Consensus       425 ~~~~--------l~~l~~L~~L~  439 (488)
                      ....        +..+|+|+.|+
T Consensus       130 ~~~~~~~y~~~i~~~~P~L~~LD  152 (162)
T d1koha1         130 TFRDQSTYISAIRERFPKLLRLD  152 (162)
T ss_dssp             SSSSHHHHHHHHHTTSTTCCEET
T ss_pred             CcccchhHHHHHHHHCCCCCEEC
Confidence            4331        45688888775

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.80  E-value=0.00029  Score=57.17  Aligned_cols=92  Identities=13%  Similarity=0.083  Sum_probs=54.4

Q ss_pred             cccCcceecccccchhhhhh---HHHHHhcCCccceeecCCCcccccccCCcccccccCccCchhhhhhccCcEeecCCC
Q 038150          177 RVKRMRTLLINDHSLLNAAI---LEELFRELTSLRALDFGGSYHSTRLLTPEVPRNIEKLVLPETLCELYNLEKLDISDC  253 (488)
Q Consensus       177 ~~~~Lr~L~l~~~~~~~~~~---~~~~~~~l~~Lr~L~Ls~~~~~~~~~~~~lp~~i~~l~lp~~i~~L~~L~~L~l~~~  253 (488)
                      +.+.|++|+++++..++...   +-..+...+.|+.|+|++|.+     ...-..     .+...+...+.|++|++++|
T Consensus        13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l-----~~~~~~-----~la~~L~~n~~L~~L~L~~n   82 (167)
T d1pgva_          13 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAI-----SDSEAR-----GLIELIETSPSLRVLNVESN   82 (167)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCC-----BHHHHT-----THHHHHHHCSSCCEEECCSS
T ss_pred             CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeecccccc-----chhHHH-----HHhhhhhhcccccceeeehh
Confidence            45778888887643443322   333456667788888888873     111111     33345556677888888887


Q ss_pred             CCccc----CchhhccccccceeeccCCC
Q 038150          254 FNLKE----LPEGIGKLINVKHLLNRGTN  278 (488)
Q Consensus       254 ~~~~~----lp~~l~~L~~L~~L~l~~~~  278 (488)
                      .....    +-..+..-++|++|++++|.
T Consensus        83 ~i~~~g~~~l~~aL~~n~sL~~L~l~~n~  111 (167)
T d1pgva_          83 FLTPELLARLLRSTLVTQSIVEFKADNQR  111 (167)
T ss_dssp             BCCHHHHHHHHHHTTTTCCCSEEECCCCS
T ss_pred             hcchHHHHHHHHHHHhCCcCCEEECCCCc
Confidence            53221    22345555677777777664

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.71  E-value=0.00041  Score=56.20  Aligned_cols=47  Identities=15%  Similarity=0.034  Sum_probs=25.1

Q ss_pred             hhcccCCCCCceeecccCchhhhhhhccccchHHHhhhCCCCCCCCEEEeccccC
Q 038150          344 LELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKELEIEYYRG  398 (488)
Q Consensus       344 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  398 (488)
                      ..+...+.|+.|++++|.+....        ...+...+...++|++|+++++..
T Consensus        66 ~~L~~n~~L~~L~L~~n~i~~~g--------~~~l~~aL~~n~sL~~L~l~~n~~  112 (167)
T d1pgva_          66 ELIETSPSLRVLNVESNFLTPEL--------LARLLRSTLVTQSIVEFKADNQRQ  112 (167)
T ss_dssp             HHHHHCSSCCEEECCSSBCCHHH--------HHHHHHHTTTTCCCSEEECCCCSS
T ss_pred             hhhhhcccccceeeehhhcchHH--------HHHHHHHHHhCCcCCEEECCCCcC
Confidence            34444556666666666554321        134445555556666666665543

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=95.90  E-value=0.00092  Score=53.94  Aligned_cols=115  Identities=17%  Similarity=0.139  Sum_probs=56.9

Q ss_pred             CCCcccccccccccCCC-ChhhhhHhhcccCCCCCceeecccCchhhhhhhccccchHHHhhhCCCCCCCCEEEeccccC
Q 038150          320 NLEHLQVCGISRLGDVS-DVGEAKRLELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKELEIEYYRG  398 (488)
Q Consensus       320 ~L~~L~~L~~~~~~~~~-~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  398 (488)
                      +.++|+.|.+++...+. .....+...+...++|+.|++++|.+....        ...+...+...+.++.+.+++|..
T Consensus        15 ~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~--------~~~L~~~l~~~~~l~~l~l~~~~~   86 (166)
T d1io0a_          15 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPV--------AFALAEMLKVNNTLKSLNVESNFI   86 (166)
T ss_dssp             TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHH--------HHHHHHHHHHCSSCCEEECCSSCC
T ss_pred             cCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHH--------HHHHHHHHhhcccchhhhhccccc
Confidence            44566666665544332 223345555566667777777776654321        133344444556677777766654


Q ss_pred             CCC----CchHHHhccCCcEEeecCCCC-CCC-----CCC-CCCCCCcCeeeecc
Q 038150          399 NTV----FPSWMTSLTNLKSLDLSSCEN-CEQ-----LPP-LGKLQSLENLHIWR  442 (488)
Q Consensus       399 ~~~----lp~~~~~l~~L~~L~l~~~~~-~~~-----~~~-l~~l~~L~~L~l~~  442 (488)
                      ...    +...+...++|+.++|..+.. .++     +.. +...++|+.|++..
T Consensus        87 ~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~  141 (166)
T d1io0a_          87 SGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHF  141 (166)
T ss_dssp             CHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCC
T ss_pred             cchhHHHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcC
Confidence            421    112223455666655543321 111     111 33456666666643

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=95.37  E-value=0.0036  Score=50.24  Aligned_cols=73  Identities=21%  Similarity=0.081  Sum_probs=41.5

Q ss_pred             hhhHhhcccCCCCCceeecccCchhhhhhhccccchHHHhhhCCCCCCCCEEEecccc--CCC----CCchHHHhccCCc
Q 038150          340 EAKRLELDKKKYLSSLTLWFDKEEEEEGERRKNEDNQLLLEALRPPLNLKELEIEYYR--GNT----VFPSWMTSLTNLK  413 (488)
Q Consensus       340 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~--~~~----~lp~~~~~l~~L~  413 (488)
                      ..+...+...+.++.++++++.+....        ...+...+...++|+.++|..+.  +..    .+...+...++|+
T Consensus        64 ~~L~~~l~~~~~l~~l~l~~~~~~~~g--------~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~  135 (166)
T d1io0a_          64 FALAEMLKVNNTLKSLNVESNFISGSG--------ILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLL  135 (166)
T ss_dssp             HHHHHHHHHCSSCCEEECCSSCCCHHH--------HHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCC
T ss_pred             HHHHHHHhhcccchhhhhccccccchh--------HHHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcC
Confidence            334455566677777777777664332        25555666667777776665432  211    1222334567777


Q ss_pred             EEeecCC
Q 038150          414 SLDLSSC  420 (488)
Q Consensus       414 ~L~l~~~  420 (488)
                      .|++..+
T Consensus       136 ~L~l~~~  142 (166)
T d1io0a_         136 KFGYHFT  142 (166)
T ss_dssp             EEECCCS
T ss_pred             EEeCcCC
Confidence            7777644