Citrus Sinensis ID: 038162

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------
Protein Sequence
EEGYRSRAEKLKNDVKQMFLEAADLLAKLELIDRICKLGLSYLFEEKIREVLVDTVAFLKNDTGCLQVKDLYATALCFKLLRQHGYEISQDVFLDFMDETGTTFSTSKCTDIKGPIELCEASQLALE
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHccccccHHHHHHHcccccccccccccccHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHccccccHHHHHHHEcccccHHHHHHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
EEGYRSRAEKLKNDVKQMFLEAADLLAKLELIDRICKLGLSYLFEEKIREVLVDTVAFLKndtgclqvKDLYATALCFKLLRQHGYEISQDVFLDFmdetgttfstskctdikgpiELCEASQLALE
Flexible Loop (DISEMBL)
eegyrsraeklkndvKQMFLEAADLLAKLELIDRICKLGLSYLFEEKIREVLVDTVAFLKNDTGCLQVKDLYATALCFKLLRQHGYEISQDVFLDFMDETGTTFstskctdikgpIELCEASQLALE
Low Complexity Region (SEG)
EEGYRSRAEKLKNDVKQMFleaadllaklelIDRICKLGLSYLFEEKIREVLVDTVAFLKNDTGCLQVKDLYATALCFKLLRQHGYEISQDVFLDFMDETGTTFSTSKCTDIKGPIELCEASQLALE
Disordered region (IsUnstruct)
**************VKQMFLEAADLLAKLELIDRICKLGLSYLFEEKIREVLVDTVAFLKNDTGCLQVKDLYATALCFKLLRQHGYEISQDVFLDFMDETGTTFSTSKCTDIKGPIELC********
Disordered Region (DISOPRED)
**GYRSRAEKLKNDVKQMFLEAADLLAKLELIDRICKLGLSYLFEEKIREVLVDTVAFLKNDTGCLQVKDLYATALCFKLLRQHGYEISQDVFLDFMDETGTTFSTSKCTDIKGPIELCEASQLALE
Disordered Region (DISEMBL)
EEGYRSRAEKLKNDVKQMFLEAADLLAKLELIDRICKLGLSYLFEEKIREVLVDTVAFLKNDTGCLQVKDLYATALCFKLLRQHGYEISQDVFLDFMDETGTTFSTSKCTDIKGPIELCEASQLALE
Disordered Region (DISPRO)
EEGYRSRAEKLKNDVKQMFLEAADLLAKLELIDRICKLGLSYLFEEKIREVLVDTVAFLKNDTGCLQVKDLYATALCFKLLRQHGYEISQDVFLDFMDETGTTFSTSKCTDIKGPIELCEASQLALE
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
EEGYRSRxxxxxxxxxxxxxxxxxxxxxLELIDRICKLGLSYLFEEKIREVLVDTVAFLKNDTGCLQVKDLYATALCFKLLRQHGYEISQDVFLDFMDETGTTFSTSKCTDIKGPIELCEASQLALE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	127	2.2.26 [Sep-21-2011]
B3TPQ7	592	Alpha-terpineol synthase,	N/A	no	0.952	0.204	0.5	1e-24
Q84LB2	576	(E,E)-alpha-farnesene syn	N/A	no	0.952	0.210	0.504	1e-22
Q8GUE4	603	Geraniol synthase, chloro	N/A	no	0.960	0.202	0.452	4e-21
Q6PWU2	590	(-)-alpha-terpineol synth	no	no	0.976	0.210	0.452	4e-20
A7IZZ2	615	(+)-alpha-pinene synthase	N/A	no	0.937	0.193	0.471	4e-20
Q93X23	597	Myrcene synthase, chlorop	N/A	no	0.889	0.189	0.470	9e-19
F6M8I0	576	Monoterpene synthase OS=S	N/A	no	0.968	0.213	0.425	1e-18
E3W205	576	Beta-bisabolene synthase	N/A	no	0.968	0.213	0.425	2e-18
A7IZZ1	622	(-)-limonene synthase, ch	N/A	no	0.937	0.191	0.438	2e-18
Q2XSC4	538	Exo-alpha-bergamotene syn	N/A	no	0.937	0.221	0.435	2e-18

>sp|B3TPQ7|ATESY_MAGGA Alpha-terpineol synthase, chloroplastic OS=Magnolia grandiflora PE=1 SV=1

 Score =  111 bits (278), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 62/124 (50%), Positives = 85/124 (68%), Gaps = 3/124 (2%)

Query: 4   YRSRAEKLKNDVKQMFLEAADLLAKLELIDRICKLGLSYLFEEKIREVLVDTVAFLKNDT 63
           Y  R EKLK DV++   EA  LL +LEL+D I +LG+ Y F+++I+E+L  T++   N+ 
Sbjct: 81  YLERVEKLKEDVRRTLQEAVGLLDQLELVDCIHRLGVGYHFDKEIKEIL-KTISTEPNNM 139

Query: 64  GCLQVKDLYATALCFKLLRQHGYEISQDVFLDFMDETGTTFSTSKCTDIKGPIELCEASQ 123
           G +   DLYA AL F+LLRQHGYE+ Q VF  FMD++ ++F  S C D+KG + L EAS 
Sbjct: 140 GLID-GDLYAMALYFRLLRQHGYEVPQGVFNRFMDDS-SSFKASLCNDVKGMLSLYEASY 197

Query: 124 LALE 127
           LALE
Sbjct: 198 LALE 201

Monoterpene synthase converting geranyl diphosphate into alpha-terpineol. In vitro, can also have an sesquiterpene synthase activity, converting farnesyl diphosphate into (E)-alpha-bisabolene (33.1%), alpha-bisabolene (18.7%), beta-sesquiphellandrene (15.8%), beta-bergamotene (12.6%), (Z)-alpha-farnesene (10.4%), and (Z)-alpha-bisabolene (9.4%).
Magnolia grandiflora (taxid: 3406)
EC: 4EC: .EC: 2EC: .EC: 3EC: .EC: 1EC: 1EC: 2

>sp|Q84LB2|AFS1_MALDO (E,E)-alpha-farnesene synthase OS=Malus domestica GN=AFS1 PE=1 SV=2

 Score =  105 bits (261), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 63/125 (50%), Positives = 84/125 (67%), Gaps = 4/125 (3%)

Query: 4   YRSRAEKLKNDVK-QMFLEAADLLAKLELIDRICKLGLSYLFEEKIREVLVDTVAFLKND 62
           YR  +EKL  +VK  +  E  DL+AKLELID + KLGL+ LFE++I+E L D++A +++D
Sbjct: 61  YRKLSEKLIEEVKIYISAETMDLVAKLELIDSVRKLGLANLFEKEIKEAL-DSIAAIESD 119

Query: 63  TGCLQVKDLYATALCFKLLRQHGYEISQDVFLDFMDETGTTFSTSKCTDIKGPIELCEAS 122
               +  DLY TAL FK+LRQHGY++SQD+F  FMDE G T        +KG +EL EAS
Sbjct: 120 NLGTR-DDLYGTALHFKILRQHGYKVSQDIFGRFMDEKG-TLENHHFAHLKGMLELFEAS 177

Query: 123 QLALE 127
            L  E
Sbjct: 178 NLGFE 182

Sesquiterpene synthase catalyzing the production of (E,E)-alpha-farnesene, the predominant terpene produced during storage of fruits. Produces all six isomers (E,E)-alpha-farnesene, (Z,E)-alpha-farnesene, (E,Z)-alpha-farnesene, (Z,Z)-alpha-farnesene, (E)-beta-farnesene and (Z)-beta-farnesene from a mix of isomeric forms of the farnesyl diphosphate precursor. Able to convert geranyl diphosphate to the monoterpenes (E)-beta-ocimene, linalool and beta-myrcene. Has also a prenyltransferase activity producing alpha-farnesene directly from geranyl diphosphate and isoprenyl diphosphate.

Malus domestica (taxid: 3750)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: -

>sp|Q8GUE4|GERS_CINTE Geraniol synthase, chloroplastic OS=Cinnamomum tenuipile GN=GerS PE=1 SV=2

 Score =  100 bits (248), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 57/126 (45%), Positives = 82/126 (65%), Gaps = 4/126 (3%)

Query: 2   EGYRSRAEKLKNDVKQMFLEAADLLAKLELIDRICKLGLSYLFEEKIREVLVDTVAFLKN 61
           E + +R +KLK  VK +  E    LA++ELID++ +LGL +LF+ +I++VL  T++   +
Sbjct: 76  EAHGTRVKKLKEVVKHLLKETDSSLAQIELIDKLRRLGLRWLFKNEIKQVLY-TIS--SD 132

Query: 62  DTGCLQVKDLYATALCFKLLRQHGYEISQDVFLDFMDETGTTFSTSKCTDIKGPIELCEA 121
           +T     KDL+A +  F+LLRQHGY++S DVF DF DE G  F  S   DIKG + L EA
Sbjct: 133 NTSIEMRKDLHAVSTRFRLLRQHGYKVSTDVFNDFKDEKG-CFKPSLSMDIKGMLSLYEA 191

Query: 122 SQLALE 127
           S LA +
Sbjct: 192 SHLAFQ 197

Monoterpene synthase that catalyzes the formation of geraniol from geranyl diphosphate.

Cinnamomum tenuipile (taxid: 192326)

EC: 3

EC: .

EC: 1

EC: .

EC: 7

EC: .

EC: 1

EC: 1

>sp|Q6PWU2|ATESY_VITVI (-)-alpha-terpineol synthase OS=Vitis vinifera PE=1 SV=1

 Score = 96.7 bits (239), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 57/126 (45%), Positives = 79/126 (62%), Gaps = 2/126 (1%)

Query: 2   EGYRSRAEKLKNDVKQMFLEAADLLAKLELIDRICKLGLSYLFEEKIREVLVDTVAFLKN 61
           E Y  R +KLK DVK M  +    L +LELID + +LG+ Y F+++I+ +L + +    N
Sbjct: 74  ETYTRRLDKLKRDVKPMLGKVKKPLDQLELIDVLQRLGIYYHFKDEIKRIL-NGIYNQYN 132

Query: 62  DTGCLQVKDLYATALCFKLLRQHGYEISQDVFLDFMDETGTTFSTSKCTDIKGPIELCEA 121
                Q  DLYATAL F+LLRQHGY++ QDVF  F D+TG +F    C D+KG + L EA
Sbjct: 133 RHEEWQKDDLYATALEFRLLRQHGYDVPQDVFSRFKDDTG-SFKACLCEDMKGMLCLYEA 191

Query: 122 SQLALE 127
           S L ++
Sbjct: 192 SYLCVQ 197

Mediates the conversion of geranyl diphosphate into alpha-terpineol, a monoterpenol. Monoterpenols contribute to the final grape and wine aroma and flavor. Also forms some 1,8-cineole and traces of other monoterpenoids.

Vitis vinifera (taxid: 29760)

EC: 4

EC: .

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: 1

EC: 1

>sp|A7IZZ2|TPS2_CANSA (+)-alpha-pinene synthase, chloroplastic OS=Cannabis sativa PE=1 SV=1

 Score = 96.7 bits (239), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 57/121 (47%), Positives = 77/121 (63%), Gaps = 2/121 (1%)

Query: 2   EGYRSRAEKLKNDVKQMFLEAADLLAKLELIDRICKLGLSYLFEEKIREVLVDTVAFLKN 61
           E Y SR+ KLK +VK+M +   + L +LELID + +LG+SY FE +I  +L +   F   
Sbjct: 96  EPYTSRSNKLKEEVKKMLVGMENSLVQLELIDTLQRLGISYHFENEIISILKEY--FTNI 153

Query: 62  DTGCLQVKDLYATALCFKLLRQHGYEISQDVFLDFMDETGTTFSTSKCTDIKGPIELCEA 121
            T      DLYATAL F+LLR++GY I Q++F DF DETG   ++ K  DIKG + L EA
Sbjct: 154 STNKNPKYDLYATALEFRLLREYGYAIPQEIFNDFKDETGKFKASIKNDDIKGVLALYEA 213

Query: 122 S 122
           S
Sbjct: 214 S 214

Involved in monoterpene (C10) olefins biosynthesis. The major product is (+)-alpha-pinene.

Cannabis sativa (taxid: 3483)

EC: 4

EC: .

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: 4

>sp|Q93X23|MYRS_QUEIL Myrcene synthase, chloroplastic OS=Quercus ilex PE=1 SV=1

 Score = 92.0 bits (227), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 56/119 (47%), Positives = 75/119 (63%), Gaps = 6/119 (5%)

Query: 11  LKNDVKQMFLEAADLLAKLELIDRICKLGLSYLFEEKIREVLVDTVAFLKNDTG--CLQV 68
           LK  V+ M  +  + L +LELI+ + +LGLSY FEE+I+ +L D V    ND G    + 
Sbjct: 91  LKEQVRMMLHKVVNPLEQLELIEILQRLGLSYHFEEEIKRIL-DGV--YNNDHGGDTWKA 147

Query: 69  KDLYATALCFKLLRQHGYEISQDVFLDFMDETGTTFSTSKCTDIKGPIELCEASQLALE 127
           ++LYATAL F+LLRQHGY +SQ+VF  F DE G +F    C D KG + L EAS   +E
Sbjct: 148 ENLYATALKFRLLRQHGYSVSQEVFNSFKDERG-SFKACLCEDTKGMLSLYEASFFLIE 205

Involved in monoterpene (C10) biosynthesis. The major product is myrcene followed by minor amounts (1.2%) of the cyclic monoterpene limonene.

Quercus ilex (taxid: 58334)

EC: 4

EC: .

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: 5

>sp|F6M8I0|MTPS2_SANAL Monoterpene synthase OS=Santalum album GN=MonoTPS1 PE=3 SV=1

 Score = 92.0 bits (227), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 54/127 (42%), Positives = 79/127 (62%), Gaps = 4/127 (3%)

Query: 1   EEGYRSRAEKLKNDVKQMFLEAADLLAKLELIDRICKLGLSYLFEEKIREVLVDTVAFLK 60
           +E +   AEKLK +VK M     + +AKLELI+ + +LGL Y FE +I+E L   ++  K
Sbjct: 60  QEKHMKMAEKLKEEVKSMIKGQMEPVAKLELINIVQRLGLKYRFESEIKEEL---LSLYK 116

Query: 61  NDTGCLQVKDLYATALCFKLLRQHGYEISQDVFLDFMDETGTTFSTSKCTDIKGPIELCE 120
           + T    V +L+ATAL F+LLR++G  + QDVF  F D++G  F +  C D++G + L E
Sbjct: 117 DGTDAWWVDNLHATALRFRLLRENGIFVPQDVFETFKDKSG-KFKSQLCKDVRGLLSLYE 175

Query: 121 ASQLALE 127
           AS L  E
Sbjct: 176 ASYLGWE 182

Monoterpene synthase.

Santalum album (taxid: 35974)

EC: 4

EC: .

EC: 2

EC: .

EC: 3

EC: .

EC: -

>sp|E3W205|SAUBS_SANAS Beta-bisabolene synthase OS=Santalum austrocaledonicum PE=2 SV=2

 Score = 91.3 bits (225), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 54/127 (42%), Positives = 78/127 (61%), Gaps = 4/127 (3%)

Query: 1   EEGYRSRAEKLKNDVKQMFLEAADLLAKLELIDRICKLGLSYLFEEKIREVLVDTVAFLK 60
           +E +   AEKLK +VK M     + +AKLELI+ + +LGL Y FE +I+E L    +  K
Sbjct: 60  QEKHMKMAEKLKEEVKSMIKGQMEPVAKLELINIVQRLGLKYRFESEIKEEL---FSLYK 116

Query: 61  NDTGCLQVKDLYATALCFKLLRQHGYEISQDVFLDFMDETGTTFSTSKCTDIKGPIELCE 120
           + T    V +L+ATAL F+LLR++G  + QDVF  F D++G  F +  C D++G + L E
Sbjct: 117 DGTDAWWVDNLHATALRFRLLRENGIFVPQDVFETFKDKSG-KFKSQLCKDVRGLLSLYE 175

Query: 121 ASQLALE 127
           AS L  E
Sbjct: 176 ASYLGWE 182

Produces almost exclusively beta-bisabolene and only traces of alpha-bisabolol from (2E,6E)-farnesyl diphosphate in fragrance biosynthesis.

Santalum austrocaledonicum (taxid: 293154)

EC: 4

EC: .

EC: 2

EC: .

EC: 3

EC: .

EC: -

>sp|A7IZZ1|TPS1_CANSA (-)-limonene synthase, chloroplastic OS=Cannabis sativa GN=TPS1 PE=1 SV=1

 Score = 91.3 bits (225), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 53/121 (43%), Positives = 74/121 (61%), Gaps = 2/121 (1%)

Query: 2   EGYRSRAEKLKNDVKQMFLEAADLLAKLELIDRICKLGLSYLFEEKIREVLVDTVAFLKN 61
           E Y SR  KL+ DVK+M +   + LA+LELID I +LG+SY FE +I  +L +   F  N
Sbjct: 102 ESYTSRLNKLEKDVKRMLIGVENSLAQLELIDTIQRLGISYRFENEIISILKEK--FTNN 159

Query: 62  DTGCLQVKDLYATALCFKLLRQHGYEISQDVFLDFMDETGTTFSTSKCTDIKGPIELCEA 121
           +       DLYATAL F+LLRQ+G+E+ Q++F +F +     F  +   DI G + L EA
Sbjct: 160 NDNPNPNYDLYATALQFRLLRQYGFEVPQEIFNNFKNHKTGEFKANISNDIMGALGLYEA 219

Query: 122 S 122
           S
Sbjct: 220 S 220

Involved in monoterpene (C10) olefins biosynthesis.

Cannabis sativa (taxid: 3483)

EC: 4

EC: .

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: 6

>sp|Q2XSC4|LABER_LAVAN Exo-alpha-bergamotene synthase OS=Lavandula angustifolia PE=1 SV=1

 Score = 91.3 bits (225), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 54/124 (43%), Positives = 80/124 (64%), Gaps = 5/124 (4%)

Query: 4   YRSRAEKLKNDVKQMFLEAADLLAKLELIDRICKLGLSYLFEEKIREVLVDTVAFLKNDT 63
           Y  ++EKLK +VK M  EA D L +LELI+ + +LG+SY F++ I ++L +     K+D+
Sbjct: 31  YVDKSEKLKIEVKMMMDEATDELEQLELINDLQRLGISYHFKDGIAKMLNN---IYKSDS 87

Query: 64  GCLQVKDLYATALCFKLLRQHGYEISQDVFLDFMDETGTTFSTSKCTDIKGPIELCEASQ 123
             ++ KDL+ TAL F+LLRQHGY + QDVF  FMD+ G  F      D+   + L EAS 
Sbjct: 88  KYME-KDLHLTALKFRLLRQHGYRVPQDVFSSFMDDEG-NFEAWVVEDVSVLVSLYEASH 145

Query: 124 LALE 127
           +++E
Sbjct: 146 ISVE 149

Catalyzes a mixture of sesquiterpenoids from (2E,6E)-farnesyl diphosphate. Catalyzes the formation of exo-alpha-bergamotene, as well as (E)-nerolidol, (Z)-alpha-bisabolene, (E)-beta-farnesene and beta-sesquiphellandrene. Also has activity towards geranyl diphosphate, but to a much lesser extent.

Lavandula angustifolia (taxid: 39329)

EC: 4

EC: .

EC: 2

EC: .

EC: 3

EC: .

EC: 8

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	127
350284790	564	alpha-farnesene synthase [Ricinus commun	0.984	0.221	0.543	3e-29
255555083	521	(R)-limonene synthase, putative [Ricinus	0.984	0.239	0.519	2e-26
336318891	574	terpene synthase 2 [Populus trichocarpa]	0.960	0.212	0.546	3e-25
297744888	322	unnamed protein product [Vitis vinifera]	0.968	0.381	0.547	3e-24
224116322	580	predicted protein [Populus trichocarpa]	0.960	0.210	0.529	4e-24
359496694	569	PREDICTED: (E,E)-alpha-farnesene synthas	0.968	0.216	0.547	1e-23
225469115	566	PREDICTED: (E,E)-alpha-farnesene synthas	0.968	0.217	0.547	1e-23
147805921	569	hypothetical protein VITISV_024711 [Viti	0.968	0.216	0.547	1e-23
147792319	569	hypothetical protein VITISV_017880 [Viti	0.968	0.216	0.539	4e-23
313755434	518	(E)-beta-ocimene/(E,E)-alpha-farnesene s	0.968	0.237	0.539	6e-23

>gi|350284790|gb|AEQ27768.1| alpha-farnesene synthase [Ricinus communis]

 Score =  133 bits (334), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 69/127 (54%), Positives = 93/127 (73%), Gaps = 2/127 (1%)

Query: 1   EEGYRSRAEKLKNDVKQMFLEAADLLAKLELIDRICKLGLSYLFEEKIREVLVDTVAFLK 60
           EE Y+++AE+LK D K +F+EA DL  KLEL+D I K+GL+  F+++I++ L    + +K
Sbjct: 47  EEKYKTQAERLKEDAKHLFIEAVDLQGKLELVDCIIKVGLASHFKDEIKKALDTIASSIK 106

Query: 61  NDTGCLQVKDLYATALCFKLLRQHGYEISQDVFLDFMDETGTTFSTSKCTDIKGPIELCE 120
           ND     +K+ Y TALCF+LLRQHGYE+SQDVF DF+DE G TF  +K  D+KG +EL E
Sbjct: 107 NDKSD-AIKNRYVTALCFRLLRQHGYEVSQDVFSDFLDENG-TFLKAKSMDVKGVLELFE 164

Query: 121 ASQLALE 127
           AS LALE
Sbjct: 165 ASYLALE 171

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255555083|ref|XP_002518579.1| (R)-limonene synthase, putative [Ricinus communis] gi|223542424|gb|EEF43966.1| (R)-limonene synthase, putative [Ricinus communis]

 Score =  123 bits (309), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 66/127 (51%), Positives = 90/127 (70%), Gaps = 2/127 (1%)

Query: 1   EEGYRSRAEKLKNDVKQMFLEAADLLAKLELIDRICKLGLSYLFEEKIREVLVDTVAFLK 60
           EE Y+++AE+LK D K +F+EA DL  KLEL+D I K+GL+  F+++I++ L    + +K
Sbjct: 47  EEKYKTQAERLKEDAKHLFIEAVDLQGKLELVDCIIKVGLASHFKDEIKKALDTIASSIK 106

Query: 61  NDTGCLQVKDLYATALCFKLLRQHGYEISQDVFLDFMDETGTTFSTSKCTDIKGPIELCE 120
           ND     +K+ Y TALCF+LLRQHGYE+SQ    DF+DE G TF  +K  D+KG +EL E
Sbjct: 107 NDKSD-AIKNRYVTALCFRLLRQHGYEVSQAKKSDFLDENG-TFLKAKSMDVKGVLELFE 164

Query: 121 ASQLALE 127
           AS LALE
Sbjct: 165 ASYLALE 171

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|336318891|gb|AEI52902.1| terpene synthase 2 [Populus trichocarpa]

 Score =  119 bits (299), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 70/128 (54%), Positives = 87/128 (67%), Gaps = 6/128 (4%)

Query: 1   EEGYRSRAEKLKNDVKQMFLEAADLLAKLELIDRICKLGLSYLFEEKIREVLVDTVAFLK 60
           EE YR   EKL+ +VK +F+EA DLLAKL+L+D + KLGL   FEE+I++ L    A +K
Sbjct: 53  EEQYRRVTEKLREEVKSIFVEAVDLLAKLKLVDSVIKLGLGSYFEEEIKQSLDIIAASIK 112

Query: 61  NDTGCLQV-KDLYATALCFKLLRQHGYEISQDVFLDFMDETGTTFSTSKCTDIKGPIELC 119
           N    L+V ++LY TAL FKLLR HGYE+SQ VF  F D T      SKCTD++G IEL 
Sbjct: 113 NKN--LKVEENLYVTALRFKLLRLHGYEVSQGVFNGFFDGTS---DKSKCTDVRGLIELF 167

Query: 120 EASQLALE 127
           EAS LA E
Sbjct: 168 EASHLAYE 175

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297744888|emb|CBI38372.3| unnamed protein product [Vitis vinifera]

 Score =  116 bits (291), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 69/126 (54%), Positives = 91/126 (72%), Gaps = 3/126 (2%)

Query: 2   EGYRSRAEKLKNDVKQMFLEAADLLAKLELIDRICKLGLSYLFEEKIREVLVDTVAFLKN 61
           E Y  + ++LK +V+++F+E  + LAKLE ID I KLGL   FEE+IRE L DT+   KN
Sbjct: 54  EPYTRQVQQLKGEVRRVFVEVVEPLAKLEFIDSIKKLGLGNFFEEEIREAL-DTIMSDKN 112

Query: 62  DTGCLQVKDLYATALCFKLLRQHGYEISQDVFLDFMDETGTTFSTSKCTDIKGPIELCEA 121
           ++  ++  +LYA ALCF+LLRQHGY +SQD+F  FM+E G  FS S CT++KG IEL EA
Sbjct: 113 NSPGIKA-NLYAAALCFRLLRQHGYGVSQDMFSGFMEEVG-MFSKSTCTNVKGMIELFEA 170

Query: 122 SQLALE 127
           S LALE
Sbjct: 171 SHLALE 176

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224116322|ref|XP_002317269.1| predicted protein [Populus trichocarpa] gi|222860334|gb|EEE97881.1| predicted protein [Populus trichocarpa]

 Score =  116 bits (290), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 71/134 (52%), Positives = 88/134 (65%), Gaps = 12/134 (8%)

Query: 1   EEGYRSRAEKLKNDVKQMFLEAADLLAKLELIDRICKLGLSYLFEEKIREVLVDTVAFLK 60
           EE YR   EKL+ +VK +F+EA DLLAKL+L+D + KLGL   FEE+I++ L    A +K
Sbjct: 53  EEQYRRVTEKLREEVKSIFVEAVDLLAKLKLVDSVIKLGLGSYFEEEIKQSLDIIAASIK 112

Query: 61  NDTGCLQV-KDLYATALCFKLLRQHGYEISQ------DVFLDFMDETGTTFSTSKCTDIK 113
           N    L+V ++LY TAL FKLLR HGYE+SQ       VF  F D    TF  SKCTD++
Sbjct: 113 NKN--LKVEENLYVTALRFKLLRLHGYEVSQGENTGRGVFNGFFD---GTFDKSKCTDVR 167

Query: 114 GPIELCEASQLALE 127
           G IEL EAS LA E
Sbjct: 168 GLIELFEASHLAYE 181

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359496694|ref|XP_002264134.2| PREDICTED: (E,E)-alpha-farnesene synthase-like [Vitis vinifera]

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 69/126 (54%), Positives = 91/126 (72%), Gaps = 3/126 (2%)

Query: 2   EGYRSRAEKLKNDVKQMFLEAADLLAKLELIDRICKLGLSYLFEEKIREVLVDTVAFLKN 61
           E Y  + ++LK +V+++F+E  + LAKLE ID I KLGL   FEE+IRE L DT+   KN
Sbjct: 54  EPYTRQVQQLKGEVRRVFVEVVEPLAKLEFIDSIKKLGLGNFFEEEIREAL-DTIMSDKN 112

Query: 62  DTGCLQVKDLYATALCFKLLRQHGYEISQDVFLDFMDETGTTFSTSKCTDIKGPIELCEA 121
           ++  ++  +LYA ALCF+LLRQHGY +SQD+F  FM+E G  FS S CT++KG IEL EA
Sbjct: 113 NSPGIKA-NLYAAALCFRLLRQHGYGVSQDMFSGFMEEVG-MFSKSTCTNVKGMIELFEA 170

Query: 122 SQLALE 127
           S LALE
Sbjct: 171 SHLALE 176

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225469115|ref|XP_002269781.1| PREDICTED: (E,E)-alpha-farnesene synthase [Vitis vinifera] gi|297744878|emb|CBI38337.3| unnamed protein product [Vitis vinifera] gi|313755432|gb|ADR74207.1| (E)-beta-ocimene/(E,E)-alpha-farnesene synthase [Vitis vinifera]

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 69/126 (54%), Positives = 91/126 (72%), Gaps = 3/126 (2%)

Query: 2   EGYRSRAEKLKNDVKQMFLEAADLLAKLELIDRICKLGLSYLFEEKIREVLVDTVAFLKN 61
           E Y  + ++LK +V+++F+E  + LAKLE ID I KLGL   FEE+IRE L DT+   KN
Sbjct: 54  EPYTRQVQQLKGEVRRVFVEVVEPLAKLEFIDSIKKLGLGNFFEEEIREAL-DTIMSDKN 112

Query: 62  DTGCLQVKDLYATALCFKLLRQHGYEISQDVFLDFMDETGTTFSTSKCTDIKGPIELCEA 121
           ++  ++  +LYA ALCF+LLRQHGY +SQD+F  FM+E G  FS S CT++KG IEL EA
Sbjct: 113 NSPGIKA-NLYAAALCFRLLRQHGYGVSQDMFSGFMEEVG-MFSKSTCTNVKGMIELFEA 170

Query: 122 SQLALE 127
           S LALE
Sbjct: 171 SHLALE 176

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147805921|emb|CAN76554.1| hypothetical protein VITISV_024711 [Vitis vinifera]

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 69/126 (54%), Positives = 91/126 (72%), Gaps = 3/126 (2%)

Query: 2   EGYRSRAEKLKNDVKQMFLEAADLLAKLELIDRICKLGLSYLFEEKIREVLVDTVAFLKN 61
           E Y  + ++LK +V+++F+E  + LAKLE ID I KLGL   FEE+IRE L DT+   KN
Sbjct: 54  EPYTRQVQQLKGEVRRVFVEVVEPLAKLEFIDSIKKLGLGNFFEEEIREAL-DTIMSDKN 112

Query: 62  DTGCLQVKDLYATALCFKLLRQHGYEISQDVFLDFMDETGTTFSTSKCTDIKGPIELCEA 121
           ++  ++  +LYA ALCF+LLRQHGY +SQD+F  FM+E G  FS S CT++KG IEL EA
Sbjct: 113 NSPGIKA-NLYAAALCFRLLRQHGYGVSQDMFSGFMEEVG-MFSKSTCTNVKGMIELFEA 170

Query: 122 SQLALE 127
           S LALE
Sbjct: 171 SHLALE 176

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147792319|emb|CAN74710.1| hypothetical protein VITISV_017880 [Vitis vinifera]

 Score =  112 bits (280), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 68/126 (53%), Positives = 91/126 (72%), Gaps = 3/126 (2%)

Query: 2   EGYRSRAEKLKNDVKQMFLEAADLLAKLELIDRICKLGLSYLFEEKIREVLVDTVAFLKN 61
           E Y  + ++LK +V+++F+E  + LAKLE ID I KLGL   FEE+IRE L DT+   KN
Sbjct: 54  EPYTRQVQQLKGEVRRVFVEVVEPLAKLEFIDSIKKLGLGNFFEEEIREAL-DTIMSDKN 112

Query: 62  DTGCLQVKDLYATALCFKLLRQHGYEISQDVFLDFMDETGTTFSTSKCTDIKGPIELCEA 121
           ++  ++  +LYA ALCF+LLRQHGY +SQ++F  FM+E G  FS S CT++KG IEL EA
Sbjct: 113 NSPGIKA-NLYAAALCFRLLRQHGYGVSQNMFSGFMEEVG-MFSKSTCTNVKGMIELFEA 170

Query: 122 SQLALE 127
           S LALE
Sbjct: 171 SHLALE 176

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|313755434|gb|ADR74208.1| (E)-beta-ocimene/(E,E)-alpha-farnesene synthase [Vitis vinifera]

 Score =  112 bits (279), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 68/126 (53%), Positives = 90/126 (71%), Gaps = 3/126 (2%)

Query: 2   EGYRSRAEKLKNDVKQMFLEAADLLAKLELIDRICKLGLSYLFEEKIREVLVDTVAFLKN 61
           E Y  + ++ K +V+++F+E  + LAKLE ID I KLGL   FEE+IRE L DT+   KN
Sbjct: 3   EPYTRQVQQXKGEVRRVFVEVVEPLAKLEFIDSIKKLGLGNFFEEEIREAL-DTIMSDKN 61

Query: 62  DTGCLQVKDLYATALCFKLLRQHGYEISQDVFLDFMDETGTTFSTSKCTDIKGPIELCEA 121
           ++  ++  +LYA ALCF+LLRQHGY +SQD+F  FM+E G  FS S CT++KG IEL EA
Sbjct: 62  NSPGIKA-NLYAAALCFRLLRQHGYGVSQDMFSGFMEEVG-MFSKSTCTNVKGMIELFEA 119

Query: 122 SQLALE 127
           S LALE
Sbjct: 120 SHLALE 125

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	127
UNIPROTKB|B3TPQ7	592	B3TPQ7 "Alpha-terpineol syntha	0.952	0.204	0.443	3.8e-20
UNIPROTKB|Q8GUE4	603	GerS "Geraniol synthase, chlor	0.960	0.202	0.412	1.6e-17
UNIPROTKB|J7LH11	546	J7LH11 "(+)-epi-alpha-bisabolo	0.992	0.230	0.385	3.2e-16
UNIPROTKB|J7LQ09	542	J7LQ09 "Trans-alpha-bergamoten	0.952	0.223	0.404	6.3e-15
UNIPROTKB|Q672F7	595	EBOS "Tricyclene synthase EBOS	0.929	0.198	0.392	1.2e-14
UNIPROTKB|B2KSJ5	571	B2KSJ5 "(+)-gamma-cadinene syn	0.960	0.213	0.384	1.9e-14
UNIPROTKB|B5A434	576	B5A434 "(+)-alpha-terpineol sy	0.968	0.213	0.377	3.1e-14
UNIPROTKB|Q8H2B4	606	Q8H2B4 "R-linalool synthase, c	0.992	0.207	0.367	1.5e-13
UNIPROTKB|Q50L36	595	ISPS "Isoprene synthase, chlor	0.968	0.206	0.377	3.1e-13
UNIPROTKB|Q5UB07	580	TPS4 "Tricyclene synthase TPS4	0.944	0.206	0.392	4.9e-13

UNIPROTKB|B3TPQ7 B3TPQ7 "Alpha-terpineol synthase, chloroplastic" [Magnolia grandiflora (taxid:3406)]

 Score = 247 (92.0 bits), Expect = 3.8e-20, P = 3.8e-20
 Identities = 55/124 (44%), Positives = 77/124 (62%)

Query:     4 YRSRAEKLKNDVKQMFXXXXXXXXXXXXIDRICKLGLSYLFEEKIREVLVDTVAFLKNDT 63
             Y  R EKLK DV++              +D I +LG+ Y F+++I+E+L  T++   N+ 
Sbjct:    81 YLERVEKLKEDVRRTLQEAVGLLDQLELVDCIHRLGVGYHFDKEIKEIL-KTISTEPNNM 139

Query:    64 GCLQVKDLYATALCFKLLRQHGYEISQDVFLDFMDETGTTFSTSKCTDIKGPIELCEASQ 123
             G +   DLYA AL F+LLRQHGYE+ Q VF  FMD++ ++F  S C D+KG + L EAS 
Sbjct:   140 GLID-GDLYAMALYFRLLRQHGYEVPQGVFNRFMDDS-SSFKASLCNDVKGMLSLYEASY 197

Query:   124 LALE 127
             LALE
Sbjct:   198 LALE 201

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0010333 "terpene synthase activity" evidence=IDA

GO:0033383 "geranyl diphosphate metabolic process" evidence=IDA

GO:0043693 "monoterpene biosynthetic process" evidence=IDA

UNIPROTKB|Q8GUE4 GerS "Geraniol synthase, chloroplastic" [Cinnamomum tenuipile (taxid:192326)]

 Score = 223 (83.6 bits), Expect = 1.6e-17, P = 1.6e-17
 Identities = 52/126 (41%), Positives = 75/126 (59%)

Query:     2 EGYRSRAEKLKNDVKQMFXXXXXXXXXXXXIDRICKLGLSYLFEEKIREVLVDTVAFLKN 61
             E + +R +KLK  VK +             ID++ +LGL +LF+ +I++VL  T++   +
Sbjct:    76 EAHGTRVKKLKEVVKHLLKETDSSLAQIELIDKLRRLGLRWLFKNEIKQVLY-TIS--SD 132

Query:    62 DTGCLQVKDLYATALCFKLLRQHGYEISQDVFLDFMDETGTTFSTSKCTDIKGPIELCEA 121
             +T     KDL+A +  F+LLRQHGY++S DVF DF DE G  F  S   DIKG + L EA
Sbjct:   133 NTSIEMRKDLHAVSTRFRLLRQHGYKVSTDVFNDFKDEKGC-FKPSLSMDIKGMLSLYEA 191

Query:   122 SQLALE 127
             S LA +
Sbjct:   192 SHLAFQ 197

GO:0000287 "magnesium ion binding" evidence=IDA

GO:0016787 "hydrolase activity" evidence=IDA

GO:0030145 "manganese ion binding" evidence=IDA

GO:0033383 "geranyl diphosphate metabolic process" evidence=IDA

GO:0042803 "protein homodimerization activity" evidence=ISS

UNIPROTKB|J7LH11 J7LH11 "(+)-epi-alpha-bisabolol synthase" [Phyla dulcis (taxid:542674)]

 Score = 210 (79.0 bits), Expect = 3.2e-16, P = 3.2e-16
 Identities = 49/127 (38%), Positives = 71/127 (55%)

Query:     1 EEGYRSRAEKLKNDVKQMFXXXXXXXXXXXXIDRICKLGLSYLFEEKIREVLVDTVAFLK 60
             E+ +  +AEKLK++V+ +             +D + +L +SY F E I   L +    L 
Sbjct:    30 EKRFLEQAEKLKDEVRMLLEKTSDPLDHIELVDVLQRLAISYHFTEYIDRNLKNIYDILI 89

Query:    61 NDTGCLQVKDLYATALCFKLLRQHGYEISQDVFLDFMDETGTTFSTSKCTDIKGPIELCE 120
             +        +L+AT L F+LLRQHGY++S +VF +FMDETG  F  + C DIKG + L E
Sbjct:    90 DGRRWNHADNLHATTLSFRLLRQHGYQVSPEVFRNFMDETGN-FKKNLCDDIKGLLSLYE 148

Query:   121 ASQLALE 127
             AS L  E
Sbjct:   149 ASYLLTE 155

GO:0010334 "sesquiterpene synthase activity" evidence=IDA

GO:0045339 "farnesyl diphosphate catabolic process" evidence=IDA

GO:1901943 "(+)-epi-alpha-bisabolol biosynthetic process" evidence=IDA

UNIPROTKB|J7LQ09 J7LQ09 "Trans-alpha-bergamotene synthase" [Phyla dulcis (taxid:542674)]

 Score = 198 (74.8 bits), Expect = 6.3e-15, P = 6.3e-15
 Identities = 51/126 (40%), Positives = 71/126 (56%)

Query:     4 YRSRAEKLKNDVKQMFXXXXXXXXXXXXIDRICKLGLSYLFEEKIREVLVDTVAFLKNDT 63
             Y  +A+KLK  VK +             ID I +LG+S+ F ++I+ VL +    ++ + 
Sbjct:    31 YLKQADKLKWQVKVIIKETKQRLDQLDLIDNIQRLGISHHFRDEIQRVLQNIYEKMRVEC 90

Query:    64 G--CLQVKDLYATALCFKLLRQHGYEISQDVFLDFMDETGTTFSTSKCTDIKGPIELCEA 121
                 L  KDLY+T+L F+LLRQHGY +SQDVF  FMD  G  F      D+KG + L EA
Sbjct:    91 PDRMLMEKDLYSTSLQFRLLRQHGYHVSQDVFCSFMDGAGN-FQA--VDDLKGILALYEA 147

Query:   122 SQLALE 127
             S L+ E
Sbjct:   148 SFLSRE 153

GO:0010334 "sesquiterpene synthase activity" evidence=IDA

GO:0045339 "farnesyl diphosphate catabolic process" evidence=IDA

GO:1901940 "(-)-exo-alpha-bergamotene biosynthetic process" evidence=IDA

UNIPROTKB|Q672F7 EBOS "Tricyclene synthase EBOS, chloroplastic" [Lotus japonicus (taxid:34305)]

 Score = 196 (74.1 bits), Expect = 1.2e-14, P = 1.2e-14
 Identities = 49/125 (39%), Positives = 74/125 (59%)

Query:     4 YRSRAEKLKNDVKQMFXXXXXXX-XXXXXIDRICKLGLSYLFEEKIREVLVDTVAFLKND 62
             Y   A+KL+ +V+++              ID + +LGL Y FE++IREVL     FL  +
Sbjct:    83 YEDMAKKLQEEVRRIIKDDKAEIWTTLELIDDVKRLGLGYHFEKEIREVLNK---FLSLN 139

Query:    63 TGCLQVKDLYATALCFKLLRQHGYEISQDVFLDFMDETGTTFSTSKCTDIKGPIELCEAS 122
             T C+  + L  TALCF+LLR++G ++S D+F  F+D+ G  F TS   ++KG + L EAS
Sbjct:   140 T-CVH-RSLDKTALCFRLLREYGSDVSADIFERFLDQNGN-FKTSLVNNVKGMLSLYEAS 196

Query:   123 QLALE 127
              L+ E
Sbjct:   197 FLSYE 201

GO:0008152 "metabolic process" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=ISS

GO:0009611 "response to wounding" evidence=IEP

GO:0010333 "terpene synthase activity" evidence=IDA

GO:0080027 "response to herbivore" evidence=IEP

UNIPROTKB|B2KSJ5 B2KSJ5 "(+)-gamma-cadinene synthase" [Cucumis melo (taxid:3656)]

 Score = 194 (73.4 bits), Expect = 1.9e-14, P = 1.9e-14
 Identities = 50/130 (38%), Positives = 72/130 (55%)

Query:     1 EEGYRSRAEKLKNDVKQMFXXXXXXXXXXXX-IDRICKLGLSYLFEEKIREVLVDTVAFL 59
             +EG + R EKLK +++ M              +D I +LG+SY FE+++ E L + +   
Sbjct:    49 DEGMKERTEKLKEEIRMMMIAYVENQLIKLNLVDSIQRLGVSYHFEDEVDEFL-EHIYVS 107

Query:    60 KNDTGCLQVK-----DLYATALCFKLLRQHGYEISQDVFLDFMDETGTTFSTSKCTDIKG 114
              N++  L  K     DL+ TAL F+LLRQ GY IS D+FL FMD+ G  F  S   D +G
Sbjct:   108 YNNSLLLSNKNSNGEDLHITALLFRLLRQQGYRISCDIFLKFMDDNGK-FKESLVEDERG 166

Query:   115 PIELCEASQL 124
              + L EAS +
Sbjct:   167 LLSLYEASHM 176

GO:0010334 "sesquiterpene synthase activity" evidence=IDA

GO:0045338 "farnesyl diphosphate metabolic process" evidence=IDA

GO:0051762 "sesquiterpene biosynthetic process" evidence=IDA

UNIPROTKB|B5A434 B5A434 "(+)-alpha-terpineol synthase" [Santalum album (taxid:35974)]

 Score = 192 (72.6 bits), Expect = 3.1e-14, P = 3.1e-14
 Identities = 48/127 (37%), Positives = 70/127 (55%)

Query:     1 EEGYRSRAEKLKNDVKQMFXXXXXXXXXXXXIDRICKLGLSYLFEEKIREVLVDTVAFLK 60
             +E +   AEKLK +VK M             I+ + +LGL Y FE +I+E L    +  K
Sbjct:    60 QEKHMKMAEKLKEEVKSMIKGQMEPVAKLELINILQRLGLKYRFESEIKEELF---SLYK 116

Query:    61 NDTGCLQVKDLYATALCFKLLRQHGYEISQDVFLDFMDETGTTFSTSKCTDIKGPIELCE 120
             + T    V +L+ATAL F+LLR++G  + QDVF    D++G  F +  C D++G + L E
Sbjct:   117 DGTDAWWVDNLHATALRFRLLRENGIFVPQDVFETLKDKSGK-FKSQLCKDVRGLLSLYE 175

Query:   121 ASQLALE 127
             AS L  E
Sbjct:   176 ASYLGWE 182

GO:0010333 "terpene synthase activity" evidence=IDA

GO:0033383 "geranyl diphosphate metabolic process" evidence=IDA

UNIPROTKB|Q8H2B4 Q8H2B4 "R-linalool synthase, chloroplastic" [Mentha aquatica (taxid:190902)]

 Score = 186 (70.5 bits), Expect = 1.5e-13, P = 1.5e-13
 Identities = 47/128 (36%), Positives = 69/128 (53%)

Query:     1 EEGYRSRAEKLKNDVKQMFXXXXXXXXXXXXIDRICKLGLSYLFEEKIREVLVDTVAFLK 60
             EE    R E+L  +VK++             ID +  LGLSY F ++I+ +L       +
Sbjct:    94 EEKQLEREEELIMEVKKLLGAKMEATKQLELIDDLQNLGLSYFFRDEIKNILNSIYKIFQ 153

Query:    61 NDTGCLQVKDLYATALCFKLLRQHGYEISQDVFLDFMDETGTTFSTSKC-TDIKGPIELC 119
             N+    +V DL+ T+L F+LLRQHG+ +SQ VF  F +E G+ F  +    D KG ++L 
Sbjct:   154 NNNST-KVGDLHFTSLGFRLLRQHGFNVSQGVFDCFKNEHGSDFEKTLIGEDTKGVLQLY 212

Query:   120 EASQLALE 127
             EAS L  E
Sbjct:   213 EASFLLRE 220

GO:0000287 "magnesium ion binding" evidence=IDA

GO:0030145 "manganese ion binding" evidence=IDA

GO:0033383 "geranyl diphosphate metabolic process" evidence=IDA

GO:0034008 "R-linalool synthase activity" evidence=IDA

UNIPROTKB|Q50L36 ISPS "Isoprene synthase, chloroplastic" [Populus alba (taxid:43335)]

 Score = 183 (69.5 bits), Expect = 3.1e-13, P = 3.1e-13
 Identities = 48/127 (37%), Positives = 67/127 (52%)

Query:     2 EGYRSRAEKLKNDVK-QMFXXXXXXXXXXXXIDRICKLGLSYLFEEKIREVLVDTVAFLK 60
             E Y+ +A+KL+ +V+ ++             ID + +LGL Y FE  IR  L   V+   
Sbjct:    80 EVYKDKAKKLEAEVRREINNEKAEFLTLLELIDNVQRLGLGYRFESDIRGALDRFVS--S 137

Query:    61 NDTGCLQVKDLYATALCFKLLRQHGYEISQDVFLDFMDETGTTFSTSKCTDIKGPIELCE 120
                  +    L+ TAL F+LLRQHG+E+SQ+ F  F D+ G      K  DIK  + L E
Sbjct:   138 GGFDAVTKTSLHGTALSFRLLRQHGFEVSQEAFSGFKDQNGNFLENLK-EDIKAILSLYE 196

Query:   121 ASQLALE 127
             AS LALE
Sbjct:   197 ASFLALE 203

GO:0000287 "magnesium ion binding" evidence=IDA

GO:0009408 "response to heat" evidence=IEP

GO:0009409 "response to cold" evidence=IEP

GO:0009507 "chloroplast" evidence=IDA

GO:0034009 "isoprene synthase activity" evidence=IDA

GO:0043612 "isoprene biosynthetic process" evidence=IDA

GO:0050993 "dimethylallyl diphosphate metabolic process" evidence=IDA

GO:0071482 "cellular response to light stimulus" evidence=IEP

GO:0071485 "cellular response to absence of light" evidence=IEP

UNIPROTKB|Q5UB07 TPS4 "Tricyclene synthase TPS4, chloroplastic" [Medicago truncatula (taxid:3880)]

 Score = 181 (68.8 bits), Expect = 4.9e-13, P = 4.9e-13
 Identities = 49/125 (39%), Positives = 69/125 (55%)

Query:     4 YRSRAEKLKNDVKQMFXXXXXXXXXXXXIDRICKLGLSYLFEEKIREVLVDTVAFLKNDT 63
             Y  R+ +L+ +VK+M             ID + +LGLSY FEE+I E L D    L+  +
Sbjct:    72 YVDRSRRLQEEVKRMIKDENVNILEL--IDTVKQLGLSYHFEEEIGEAL-DRFLSLEKCS 128

Query:    64 GCLQV-KDLYATALCFKLLRQHGYEISQDVFLDFMDETGTTFSTSKCTDIKGPIELCEAS 122
             G     + L+ TAL F+LLR++GY+IS D+F  F D  G  F      DIKG + L +AS
Sbjct:   129 GRNNFGRSLHETALRFRLLREYGYDISPDIFEKFKDHNGN-FKACLVQDIKGMLSLYDAS 187

Query:   123 QLALE 127
              L+ E
Sbjct:   188 FLSYE 192

GO:0008152 "metabolic process" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0009611 "response to wounding" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0010333 "terpene synthase activity" evidence=IDA

GO:0080027 "response to herbivore" evidence=IEP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00110397 hypothetical protein (580 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	127
pfam01397	177	pfam01397, Terpene_synth, Terpene synthase, N-term	7e-40
cd00684	542	cd00684, Terpene_cyclase_plant_C1, Plant Terpene C	3e-32
PLN02592	800	PLN02592, PLN02592, ent-copalyl diphosphate syntha	2e-13
PLN02279	784	PLN02279, PLN02279, ent-kaur-16-ene synthase	9e-09

>gnl|CDD|216477 pfam01397, Terpene_synth, Terpene synthase, N-terminal domain

 Score =  130 bits (330), Expect = 7e-40
 Identities = 58/128 (45%), Positives = 79/128 (61%), Gaps = 4/128 (3%)

Query: 1   EEGYRSRAEKLKNDVKQMFLEAA-DLLAKLELIDRICKLGLSYLFEEKIREVLVDTVAFL 59
           +E    R E LK +V++M   +  DLL +LELID + +LG+SY FE++I+E+L D + + 
Sbjct: 16  DEKCLERLESLKEEVRKMLPSSYPDLLEQLELIDALQRLGISYHFEKEIKEIL-DQI-YR 73

Query: 60  KNDTGCLQVKDLYATALCFKLLRQHGYEISQDVFLDFMDETGTTFSTSKCTDIKGPIELC 119
             D    +  DLY TAL F+LLRQHGY++S DVF  F DE G  F  S   D+KG + L 
Sbjct: 74  NWDDNDEEEDDLYTTALAFRLLRQHGYDVSSDVFNKFKDEDG-KFKESLTNDVKGLLSLY 132

Query: 120 EASQLALE 127
           EAS L   
Sbjct: 133 EASHLRTH 140

It has been suggested that this gene family be designated tps (for terpene synthase). It has been split into six subgroups on the basis of phylogeny, called tpsa-tpsf. tpsa includes vetispiridiene synthase, 5-epi- aristolochene synthase, and (+)-delta-cadinene synthase. tpsb includes (-)-limonene synthase. tpsc includes kaurene synthase A. tpsd includes taxadiene synthase, pinene synthase, and myrcene synthase. tpse includes kaurene synthase B. tpsf includes linalool synthase. Length = 177

>gnl|CDD|173832 cd00684, Terpene_cyclase_plant_C1, Plant Terpene Cyclases, Class 1

 Score =  118 bits (297), Expect = 3e-32
 Identities = 56/130 (43%), Positives = 78/130 (60%), Gaps = 5/130 (3%)

Query: 1   EEGYRSRAEKLKNDVKQMFLEA---ADLLAKLELIDRICKLGLSYLFEEKIREVLVDTVA 57
           E+      E+LK +V++M  ++    DL  +L LIDR+ +LG+SY FE++I+E+L D + 
Sbjct: 26  EDELEEEIEELKEEVRKMLEDSEYPVDLFERLWLIDRLQRLGISYHFEDEIKEIL-DYIY 84

Query: 58  FLKNDTGCLQVKDLYATALCFKLLRQHGYEISQDVFLDFMDETGTTFSTSKCTDIKGPIE 117
               + G     DLY TAL F+LLRQHGY +S DVF  F DE G  F  S   D+KG + 
Sbjct: 85  RYWTERGESNEDDLYTTALGFRLLRQHGYNVSSDVFKKFKDEDG-KFKESLTQDVKGMLS 143

Query: 118 LCEASQLALE 127
           L EAS L+  
Sbjct: 144 LYEASHLSFP 153

This CD includes a diverse group of monomeric plant terpene cyclases (Tspa-Tspf) that convert the acyclic isoprenoid diphosphates, geranyl diphosphate (GPP), farnesyl diphosphate (FPP), or geranylgeranyl diphosphate (GGPP) into cyclic monoterpenes, diterpenes, or sesquiterpenes, respectively; a few form acyclic species. Terpnoid cyclases are soluble enzymes localized to the cytosol (sesquiterpene synthases) or plastids (mono- and diterpene synthases). All monoterpene and diterpene synthases have restrict substrate specificity, however, some sesquiterpene synthases can accept both FPP and GPP. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl diphosphates, via bridging Mg2+ ions (K+ preferred by gymnosperm cyclases), inducing conformational changes such that an N-terminal region forms a cap over the catalytic core. Loss of diphosphate from the enzyme-bound substrate (GPP, FPP, or GGPP) results in an allylic carbocation that electrophilically attacks a double bond further down the terpene chain to effect the first ring closure. Unlike monoterpene, sesquiterene, and macrocyclic diterpenes synthases, which undergo substrate ionization by diphosphate ester scission, Tpsc-like diterpene synthases catalyze cyclization reactions by an initial protonation step producing a copalyl diphosphate intermediate. These enzymes lack the aspartate-rich sequences mentioned above. Most diterpene synthases have an N-terminal, internal element (approx 210 aa) whose function is unknown. Length = 542

>gnl|CDD|215321 PLN02592, PLN02592, ent-copalyl diphosphate synthase

 Score = 65.3 bits (159), Expect = 2e-13
 Identities = 40/114 (35%), Positives = 56/114 (49%), Gaps = 17/114 (14%)

Query: 24  DLLAKLELIDRICKLGLSYLFEEKIREVLVDTVAFLKNDTG-----CLQVKDLYATALCF 78
           DL   +  +DR+ +LG+S  FE +I+E  +D V     + G        V D+  TA+ F
Sbjct: 309 DLFEHIWAVDRLQRLGISRYFEPEIKEC-IDYVHRYWTENGICWARNSHVHDIDDTAMGF 367

Query: 79  KLLRQHGYEISQDVFLDFMDETGTTF------STSKCTDIKGPIELCEASQLAL 126
           +LLR HG+++S DVF  F  E G  F      ST   T   G   L  ASQ+  
Sbjct: 368 RLLRLHGHQVSADVFKHF--EKGGEFFCFAGQSTQAVT---GMFNLYRASQVLF 416

Length = 800

>gnl|CDD|177918 PLN02279, PLN02279, ent-kaur-16-ene synthase

 Score = 51.8 bits (124), Expect = 9e-09
 Identities = 35/122 (28%), Positives = 60/122 (49%), Gaps = 7/122 (5%)

Query: 5   RSRAEKLKNDVKQMFLEAADLLAKLELIDRICKLGLSYLFEEKIREVLVDTVAFL--KND 62
           RS  +K  N V  ++    D  A+L ++D + +LG+   F ++I+ VL +T  +     +
Sbjct: 252 RSLLQKFGNAVPTVY--PLDQYARLSMVDTLERLGIDRHFRKEIKSVLDETYRYWLQGEE 309

Query: 63  TGCLQVKDLYATALCFKLLRQHGYEISQDVFLDFMDETGTTFSTSKCTDIKGPIELCEAS 122
              L   DL   AL F++LR +GY++S D    F ++  +        D    +EL  AS
Sbjct: 310 EIFL---DLATCALAFRILRLNGYDVSSDPLKQFAEDHFSDSLGGYLKDTGAVLELFRAS 366

Query: 123 QL 124
           Q+
Sbjct: 367 QI 368

Length = 784

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	127
PF01397	183	Terpene_synth: Terpene synthase, N-terminal domain	100.0
cd00684	542	Terpene_cyclase_plant_C1 Plant Terpene Cyclases, C	100.0
PLN02279	784	ent-kaur-16-ene synthase	99.98
PLN02592	800	ent-copalyl diphosphate synthase	99.97

>PF01397 Terpene_synth: Terpene synthase, N-terminal domain; InterPro: IPR001906 Sequences containing this domain belong to the terpene synthase family

Probab=100.00  E-value=5e-52  Score=320.86  Aligned_cols=123  Identities=46%  Similarity=0.726  Sum_probs=107.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHhhh-cHhhhHHHHHHHHHhCcchhhHHHHHHHHHHHHHhhcccCCCCCCCChHHHHHHHHH
Q 038162            2 EGYRSRAEKLKNDVKQMFLEAA-DLLAKLELIDRICKLGLSYLFEEKIREVLVDTVAFLKNDTGCLQVKDLYATALCFKL   80 (127)
Q Consensus         2 ~~~~~~~~~LkeeVk~~l~~~~-~~~~~L~lID~lqRLGi~yhFe~EI~~~L~~i~~~~~~~~~~~~~~dL~~~AL~FRL   80 (127)
                      +++.+++++||++||.||.... +++++|+|||+||||||+|||++||+++|++||+.|..  ......|||+|||+|||
T Consensus        22 ~~~~~~~~~Lk~~v~~~l~~~~~d~~~~L~lID~lqRLGi~yhFe~EI~~~L~~i~~~~~~--~~~~~~dL~~~AL~FRL   99 (183)
T PF01397_consen   22 EKCKERAEELKEEVRNMLPASYPDPLEKLELIDTLQRLGISYHFEDEIKEILDSIYRSWDE--DNEEIDDLYTTALRFRL   99 (183)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHHTTTT--TSHTSSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhhhccc--cccccCchhHHHHHHHH
Confidence            5678999999999999998754 89999999999999999999999999999999976654  22222599999999999


Q ss_pred             HHhcCcceehhhhhccccccccccccccccchHHHHHHhHhhccCCC
Q 038162           81 LRQHGYEISQDVFLDFMDETGTTFSTSKCTDIKGPIELCEASQLALE  127 (127)
Q Consensus        81 LRqhGy~VS~DvF~~F~d~~G~~F~~~l~~DvkglL~LYeAS~L~~~  127 (127)
                      ||||||+||||||++|+|++| +|+.++.+||+|||+|||||||+++
T Consensus       100 LRqhGy~VS~DvF~~F~d~~g-~F~~~l~~Dv~glLsLYeAS~l~~~  145 (183)
T PF01397_consen  100 LRQHGYYVSSDVFNKFKDEKG-NFKESLSNDVKGLLSLYEASHLRFH  145 (183)
T ss_dssp             HHHTT----GGGGGGGBETTS-SBSGGGGGHHHHHHHHHHHHTT--T
T ss_pred             HHHcCCcccHHHHhCcccCCC-ccchhhhHhHHHHHHHHHHHHccCC
Confidence            999999999999999999999 9999999999999999999999986

It has been suggested that this gene family be designated tps (for terpene synthase). Sequence comparisons reveal similarities between the monoterpene (C10) synthases, sesquiterpene (C15) synthases and the diterpene (C20) synthases. It has been split into six subgroups on the basis of phylogeny, called Tpsa-Tpsf []. Tpsa includes vetispiridiene synthase Q39979 from SWISSPROT, 5-epi- aristolochene synthase, Q40577 from SWISSPROT and (+)-delta-cadinene synthase P93665 from SWISSPROT . Tpsb includes (-)-limonene synthase, Q40322 from SWISSPROT. Tpsc includes copalyl diphosphate synthase (kaurene synthase A), O04408 from SWISSPROT. Tpsd includes taxadiene synthase, Q41594 from SWISSPROT, pinene synthase, O24475 from SWISSPROT and myrcene synthase, O24474 from SWISSPROT. Tpse includes ent-kaurene synthase B Q39548 from SWISSPROT. Tpsf includes linalool synthase Q9ZPN5 from SWISSPROT. In the fungus Phaeosphaeria sp. (strain L487) the synthesis of ent-kaurene from geranylgeranyl dophosphate is promoted by a single bifunctional protein [].; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 2ONH_A 2ONG_B 3P5R_A 3P5P_A 3N0F_A 3N0G_B 3PYB_A 3PYA_A 3G4F_A 3G4D_B ....

>cd00684 Terpene_cyclase_plant_C1 Plant Terpene Cyclases, Class 1

Probab=100.00  E-value=1.1e-45  Score=320.94  Aligned_cols=123  Identities=44%  Similarity=0.727  Sum_probs=112.0

Q ss_pred             hHHHHHHHHHHHHHHHHHh---hhcHhhhHHHHHHHHHhCcchhhHHHHHHHHHHHHHhhcccCCCCCCCChHHHHHHHH
Q 038162            3 GYRSRAEKLKNDVKQMFLE---AADLLAKLELIDRICKLGLSYLFEEKIREVLVDTVAFLKNDTGCLQVKDLYATALCFK   79 (127)
Q Consensus         3 ~~~~~~~~LkeeVk~~l~~---~~~~~~~L~lID~lqRLGi~yhFe~EI~~~L~~i~~~~~~~~~~~~~~dL~~~AL~FR   79 (127)
                      .+.+++++||++||+||..   ..|++++|++||+||||||+|||++||+++|++||++|... ......|||+|||+||
T Consensus        28 ~~~~~~~~lk~~v~~~~~~~~~~~~~~~~l~liD~lqrLGi~~hF~~EI~~~L~~i~~~~~~~-~~~~~~dl~~~al~FR  106 (542)
T cd00684          28 ELEEEIEELKEEVRKMLEDSEYPVDLFERLWLIDRLQRLGISYHFEDEIKEILDYIYRYWTER-GESNEDDLYTTALGFR  106 (542)
T ss_pred             HHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHHHHhhccc-ccccCCCHHHHHHHHH
Confidence            4678999999999999986   56999999999999999999999999999999999877531 1111269999999999


Q ss_pred             HHHhcCcceehhhhhccccccccccccccccchHHHHHHhHhhccCCC
Q 038162           80 LLRQHGYEISQDVFLDFMDETGTTFSTSKCTDIKGPIELCEASQLALE  127 (127)
Q Consensus        80 LLRqhGy~VS~DvF~~F~d~~G~~F~~~l~~DvkglL~LYeAS~L~~~  127 (127)
                      |||||||+||||||++|+|++| +|++++.+||+|||||||||||+++
T Consensus       107 lLR~~Gy~vs~dvf~~F~~~~g-~f~~~~~~d~~g~l~Ly~As~l~~~  153 (542)
T cd00684         107 LLRQHGYNVSSDVFKKFKDEDG-KFKESLTQDVKGMLSLYEASHLSFP  153 (542)
T ss_pred             HHHHcCCCcCHHHHhhhcCCCC-CcCchhhhhhHHHHHHHHHhhcCCC
Confidence            9999999999999999999999 9999999999999999999999986

This CD includes a diverse group of monomeric plant terpene cyclases (Tspa-Tspf) that convert the acyclic isoprenoid diphosphates, geranyl diphosphate (GPP), farnesyl diphosphate (FPP), or geranylgeranyl diphosphate (GGPP) into cyclic monoterpenes, diterpenes, or sesquiterpenes, respectively; a few form acyclic species. Terpnoid cyclases are soluble enzymes localized to the cytosol (sesquiterpene synthases) or plastids (mono- and diterpene synthases). All monoterpene and diterpene synthases have restrict substrate specificity, however, some sesquiterpene synthases can accept both FPP and GPP. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl diphosphates, via bridging Mg2+ ions (K+ preferred by gymnosperm cyclases), inducing conformational changes such that an N-terminal regi

>PLN02279 ent-kaur-16-ene synthase

Probab=99.98  E-value=9.9e-33  Score=249.42  Aligned_cols=100  Identities=33%  Similarity=0.550  Sum_probs=89.6

Q ss_pred             hcHhhhHHHHHHHHHhCcchhhHHHHHHHHHHHHHhhcccCCCCC-CCChHHHHHHHHHHHhcCcceehhhhhccccccc
Q 038162           23 ADLLAKLELIDRICKLGLSYLFEEKIREVLVDTVAFLKNDTGCLQ-VKDLYATALCFKLLRQHGYEISQDVFLDFMDETG  101 (127)
Q Consensus        23 ~~~~~~L~lID~lqRLGi~yhFe~EI~~~L~~i~~~~~~~~~~~~-~~dL~~~AL~FRLLRqhGy~VS~DvF~~F~d~~G  101 (127)
                      .++++++++||+||||||+|||++||+++|+.+|++|..  +..+ ..|+++|||+|||||||||+||||||++|+|++ 
T Consensus       268 ~~~fe~l~lvd~L~rlGi~~hF~~EI~~~L~~~~~~~~~--~~~~~~~Dl~~tAl~FRLLR~hGy~VS~dvf~~F~~~~-  344 (784)
T PLN02279        268 LDQYARLSMVDTLERLGIDRHFRKEIKSVLDETYRYWLQ--GEEEIFLDLATCALAFRILRLNGYDVSSDPLKQFAEDH-  344 (784)
T ss_pred             ccHHHHhHHHHHHHHhCCccccHHHHHHHHHHHHHhhcc--cccCCCCCHHHHHHHHHHHHHcCCCCChhHHhhcCCCc-
Confidence            578999999999999999999999999999999987754  2221 269999999999999999999999999998653 


Q ss_pred             ccccccc---ccchHHHHHHhHhhccCCC
Q 038162          102 TTFSTSK---CTDIKGPIELCEASQLALE  127 (127)
Q Consensus       102 ~~F~~~l---~~DvkglL~LYeAS~L~~~  127 (127)
                        |++++   .+||+|||+||||||++++
T Consensus       345 --F~~~l~~~~~dv~gmL~LY~AS~l~~~  371 (784)
T PLN02279        345 --FSDSLGGYLKDTGAVLELFRASQISYP  371 (784)
T ss_pred             --ccchhcccchhhHHHHHHHHHHhcCCC
Confidence              99887   5899999999999999985

>PLN02592 ent-copalyl diphosphate synthase

Probab=99.97  E-value=5.5e-32  Score=244.81  Aligned_cols=103  Identities=33%  Similarity=0.533  Sum_probs=90.7

Q ss_pred             hcHhhhHHHHHHHHHhCcchhhHHHHHHHHHHHHHhhcccCCC---C-CCCChHHHHHHHHHHHhcCcceehhhhhcccc
Q 038162           23 ADLLAKLELIDRICKLGLSYLFEEKIREVLVDTVAFLKNDTGC---L-QVKDLYATALCFKLLRQHGYEISQDVFLDFMD   98 (127)
Q Consensus        23 ~~~~~~L~lID~lqRLGi~yhFe~EI~~~L~~i~~~~~~~~~~---~-~~~dL~~~AL~FRLLRqhGy~VS~DvF~~F~d   98 (127)
                      .+++++|++||+||||||+|||++||+++|+.+|++|......   . ...|+++|||+|||||||||+||||||++|++
T Consensus       308 ~d~fE~LwlVDtLqRLGIs~hF~~EI~~iLd~iy~~w~~~g~~~a~~~~~~Dld~TALaFRLLRqhGy~VS~DvF~~F~~  387 (800)
T PLN02592        308 VDLFEHIWAVDRLQRLGISRYFEPEIKECIDYVHRYWTENGICWARNSHVHDIDDTAMGFRLLRLHGHQVSADVFKHFEK  387 (800)
T ss_pred             CcHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHHhhcCcccccCCCcCCHHHHHHHHHHHHHcCCCCChHHHHhhcC
Confidence            5899999999999999999999999999999999877541011   1 12699999999999999999999999999997


Q ss_pred             cccccccccc---ccchHHHHHHhHhhccCCC
Q 038162           99 ETGTTFSTSK---CTDIKGPIELCEASQLALE  127 (127)
Q Consensus        99 ~~G~~F~~~l---~~DvkglL~LYeAS~L~~~  127 (127)
                       +| +|+..+   .+|++|||+|||||||+++
T Consensus       388 -~g-~F~~~~ge~~~Dv~glL~LYeAS~l~~~  417 (800)
T PLN02592        388 -GG-EFFCFAGQSTQAVTGMFNLYRASQVLFP  417 (800)
T ss_pred             -CC-CccccccccccchHHHHHHHHHHhcCCC
Confidence             88 998655   7999999999999999975

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	127
1n1b_A	549	Crystal Structure Of (+)-bornyl Diphosphate Synthas		4e-14
3n0f_A	555	Crystal Structure Of Isoprene Synthase From Grey Po		2e-13
2j5c_A	569	Rational Conversion Of Substrate And Product Specif		2e-13
3g4d_A	554	Crystal Structure Of (+)-Delta-Cadinene Synthase Fr		3e-13
3pya_A	727	Crystal Structure Of Ent-Copalyl Diphosphate Syntha		4e-12
1hx9_A	548	Crystal Structure Of Teas W273s Form 1 Length = 548		5e-12
5eas_A	548	5-Epi-Aristolochene Synthase From Nicotiana Tabacum		5e-12
5eat_A	548	5-Epi-Aristolochene Synthase From Nicotiana Tabacum		5e-12
4di5_A	535	Co-Crystal Structure Of Wt 5-Epi-Aristolochene Synt		5e-12
1hxc_A	548	Crystal Structure Of Teas C440w Length = 548		6e-12
1hxg_A	548	Crystal Structure Of Teas W273sC440W Length = 548		7e-12
3m01_A	550	The Crystal Structure Of 5-Epi-Aristolochene Syntha		7e-12
3lz9_A	550	The Crystal Structure Of 5-Epi-Aristolochene Syntha		7e-12
5eau_A	548	5-Epi-Aristolochene Synthase From Nicotiana Tabacum		7e-12
2ong_A	543	Crystal Structure Of Of Limonene Synthase With 2- F		2e-11
3sae_A	817	Structure Of A Three-Domain Sesquiterpene Synthase:		7e-08
3p5p_A	764	Crystal Structure Of Taxadiene Synthase From Pacifi		9e-07
3s9v_A	785	Abietadiene Synthase From Abies Grandis Length = 78		6e-06

>pdb|1N1B|A Chain A, Crystal Structure Of (+)-bornyl Diphosphate Synthase From Sage Length = 549

Iteration: 1
 Score = 73.2 bits (178), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 48/129 (37%), Positives = 67/129 (51%), Gaps = 9/129 (6%)
Query: 1   EEGYRSRAEKLKNDVKQMFXXXXXXXXXXXXIDRICKLGLSYLFEEKIREVLVDTVAFLK 60
           EE +  R  +L   V+ +             I  +  LGLS  F+++I+E+L      + 
Sbjct: 30  EERHLDRKAELIVQVRILLKEKMEPVQQLELIHDLKYLGLSDFFQDEIKEIL----GVIY 85
Query: 61  NDTGC-----LQVKDLYATALCFKLLRQHGYEISQDVFLDFMDETGTTFSTSKCTDIKGP 115
           N+  C     ++  DLY TAL F+LLRQHG+ ISQDVF  F +E G  F  S   D KG 
Sbjct: 86  NEHKCFHNNEVEKMDLYFTALGFRLLRQHGFNISQDVFNCFKNEKGIDFKASLAQDTKGM 145
Query: 116 IELCEASQL 124
           ++L EAS L
Sbjct: 146 LQLYEASFL 154

>pdb|3N0F|A Chain A, Crystal Structure Of Isoprene Synthase From Grey Poplar Leaves (Populus X Canescens) Length = 555

Iteration: 1
 Score = 70.9 bits (172), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 50/127 (39%), Positives = 69/127 (54%), Gaps = 4/127 (3%)
Query: 2   EGYRSRAEKLKNDVK-QMFXXXXXXXXXXXXIDRICKLGLSYLFEEKIREVLVDTVAFLK 60
           E Y+ +A+KL+ +V+ ++             ID + +LGL Y FE  IR  L   V+   
Sbjct: 40  EVYKDKAKKLEAEVRREINNEKAEFLTLLELIDNVQRLGLGYRFESDIRRALDRFVSSGG 99
Query: 61  NDTGCLQVKDLYATALCFKLLRQHGYEISQDVFLDFMDETGTTFSTSKCTDIKGPIELCE 120
            D G  +   L+ATAL F+LLRQHG+E+SQ+ F  F D+ G      K  D K  + L E
Sbjct: 100 FD-GVTKTS-LHATALSFRLLRQHGFEVSQEAFSGFKDQNGNFLENLK-EDTKAILSLYE 156
Query: 121 ASQLALE 127
           AS LALE
Sbjct: 157 ASFLALE 163

>pdb|2J5C|A Chain A, Rational Conversion Of Substrate And Product Specificity In A Monoterpene Synthase. Structural Insights Into The Molecular Basis Of Rapid Evolution. Length = 569

Iteration: 1
 Score = 70.5 bits (171), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 45/127 (35%), Positives = 71/127 (55%), Gaps = 4/127 (3%)
Query: 1   EEGYRSRAEKLKNDVKQMFXXXXXXXXXXXXIDRICKLGLSYLFEEKIREVLVDTVAFLK 60
           EE +  RA  + + VK M             ID + +LG+S  FE +I E+L ++  +  
Sbjct: 59  EEKHLMRAAGMIDQVKMMLQEEVDSIRRLELIDDLRRLGISCHFEREIVEIL-NSKYYTN 117
Query: 61  NDTGCLQVKDLYATALCFKLLRQHGYEISQDVFLDFMDETGTTFSTSKCTDIKGPIELCE 120
           N+   +  +DLY+TAL F+LLRQ+ + +SQ+VF  F +  GT F  S   D +G ++L E
Sbjct: 118 NE---IDERDLYSTALRFRLLRQYDFSVSQEVFDCFKNAKGTDFKPSLVDDTRGLLQLYE 174
Query: 121 ASQLALE 127
           AS L+ +
Sbjct: 175 ASFLSAQ 181

>pdb|3G4D|A Chain A, Crystal Structure Of (+)-Delta-Cadinene Synthase From Gossypium Arboreum And Evolutionary Divergence Of Metal Binding Motifs For Catalysis Length = 554

Iteration: 1
 Score = 70.1 bits (170), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 44/119 (36%), Positives = 68/119 (57%), Gaps = 7/119 (5%)
Query: 7   RAEKLKNDVKQMFXX-XXXXXXXXXXIDRICKLGLSYLFEEKIREVLVDTVAFLKNDTGC 65
           R ++LK +V++M              ID + +LG+SY F ++I + L + +    ND   
Sbjct: 51  RHQQLKEEVRKMIVAPMANSTQKLAFIDSVQRLGVSYHFTKEIEDEL-ENIYHNNNDAE- 108
Query: 66  LQVKDLYATALCFKLLRQHGYEISQDVFLDFMDETGTTFSTSKCTDIKGPIELCEASQL 124
               DLY T++ F+LLR+HGY +S DVF  F DE G  F +S  +D++G +EL +AS L
Sbjct: 109 ---NDLYTTSIRFRLLREHGYNVSCDVFNKFKDEQG-NFKSSVTSDVRGLLELYQASYL 163

>pdb|3PYA|A Chain A, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From Arabidopsis Thaliana In Complex With (S)-15-Aza-14,15-Dihydrogeranylgeranyl Thiolodiphosphate Length = 727

Iteration: 1
 Score = 66.6 bits (161), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 42/101 (41%), Positives = 56/101 (55%), Gaps = 7/101 (6%)
Query: 32  IDRICKLGLSYLFEEKIREVLVDTVAFLKNDTG-----CLQVKDLYATALCFKLLRQHGY 86
           +DR+ +LG+S  FEE+I+E L D V     D G     C  V+D+  TA+ F+LLRQHGY
Sbjct: 252 VDRLQRLGISRYFEEEIKECL-DYVHRYWTDNGICWARCSHVQDIDDTAMAFRLLRQHGY 310
Query: 87  EISQDVFLDFMDETG-TTFSTSKCTDIKGPIELCEASQLAL 126
           ++S DVF +F  E     F       + G   L  ASQLA 
Sbjct: 311 QVSADVFKNFEKEGEFFCFVGQSNQAVTGMFNLYRASQLAF 351

>pdb|1HX9|A Chain A, Crystal Structure Of Teas W273s Form 1 Length = 548

Iteration: 1
 Score = 66.2 bits (160), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 45/124 (36%), Positives = 64/124 (51%), Gaps = 8/124 (6%)
Query: 2   EGYRSRAEKLKNDVKQMFXXX-XXXXXXXXXIDRICKLGLSYLFEEKIREVLVDTVAFLK 60
           E Y    E LK   + M              ID I +LG+SY FE++I ++L D +    
Sbjct: 40  EKYAKEIEALKEQTRNMLLATGMKLADTLNLIDTIERLGISYHFEKEIDDIL-DQI--YN 96
Query: 61  NDTGCLQVKDLYATALCFKLLRQHGYEISQDVFLDFMDETGTTFSTSKCTDIKGPIELCE 120
            ++ C    DL  +AL F+LLRQHG+ IS ++F  F DE G  F  S  +D+ G + L E
Sbjct: 97  QNSNC---NDLCTSALQFRLLRQHGFNISPEIFSKFQDENG-KFKESLASDVLGLLNLYE 152
Query: 121 ASQL 124
           AS +
Sbjct: 153 ASHV 156

>pdb|5EAS|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum Length = 548

Iteration: 1
 Score = 66.2 bits (160), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 46/124 (37%), Positives = 64/124 (51%), Gaps = 8/124 (6%)
Query: 2   EGYRSRAEKLKNDVKQMFXXX-XXXXXXXXXIDRICKLGLSYLFEEKIREVLVDTVAFLK 60
           E Y    E LK   + M              ID I +LG+SY FE++I E+L D +    
Sbjct: 40  EKYAQEIEALKEQTRSMLLATGRKLADTLNLIDIIERLGISYHFEKEIDEIL-DQI--YN 96
Query: 61  NDTGCLQVKDLYATALCFKLLRQHGYEISQDVFLDFMDETGTTFSTSKCTDIKGPIELCE 120
            ++ C    DL  +AL F+LLRQHG+ IS ++F  F DE G  F  S  +D+ G + L E
Sbjct: 97  QNSNC---NDLCTSALQFRLLRQHGFNISPEIFSKFQDENG-KFKESLASDVLGLLNLYE 152
Query: 121 ASQL 124
           AS +
Sbjct: 153 ASHV 156

>pdb|5EAT|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum With Substrate Analog Farnesyl Hydroxyphosphonate Length = 548

Iteration: 1
 Score = 66.2 bits (160), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 46/124 (37%), Positives = 64/124 (51%), Gaps = 8/124 (6%)
Query: 2   EGYRSRAEKLKNDVKQMFXXX-XXXXXXXXXIDRICKLGLSYLFEEKIREVLVDTVAFLK 60
           E Y    E LK   + M              ID I +LG+SY FE++I E+L D +    
Sbjct: 40  EKYAQEIEALKEQTRSMLLATGRKLADTLNLIDIIERLGISYHFEKEIDEIL-DQI--YN 96
Query: 61  NDTGCLQVKDLYATALCFKLLRQHGYEISQDVFLDFMDETGTTFSTSKCTDIKGPIELCE 120
            ++ C    DL  +AL F+LLRQHG+ IS ++F  F DE G  F  S  +D+ G + L E
Sbjct: 97  QNSNC---NDLCTSALQFRLLRQHGFNISPEIFSKFQDENG-KFKESLASDVLGLLNLYE 152
Query: 121 ASQL 124
           AS +
Sbjct: 153 ASHV 156

>pdb|4DI5|A Chain A, Co-Crystal Structure Of Wt 5-Epi-Aristolochene Synthase From Nicotiana Tobaccum With Geraniline Length = 535

Iteration: 1
 Score = 65.9 bits (159), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 45/124 (36%), Positives = 64/124 (51%), Gaps = 8/124 (6%)
Query: 2   EGYRSRAEKLKNDVKQMFXXX-XXXXXXXXXIDRICKLGLSYLFEEKIREVLVDTVAFLK 60
           E Y    E LK   + M              ID I +LG+SY FE++I ++L D +    
Sbjct: 27  EKYAKEIEALKEQTRNMLLATGMKLADTLNLIDTIERLGISYHFEKEIDDIL-DQI--YN 83
Query: 61  NDTGCLQVKDLYATALCFKLLRQHGYEISQDVFLDFMDETGTTFSTSKCTDIKGPIELCE 120
            ++ C    DL  +AL F+LLRQHG+ IS ++F  F DE G  F  S  +D+ G + L E
Sbjct: 84  QNSNC---NDLCTSALQFRLLRQHGFNISPEIFSKFQDENG-KFKESLASDVLGLLNLYE 139
Query: 121 ASQL 124
           AS +
Sbjct: 140 ASHV 143

>pdb|1HXC|A Chain A, Crystal Structure Of Teas C440w Length = 548

Iteration: 1
 Score = 65.9 bits (159), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 45/124 (36%), Positives = 64/124 (51%), Gaps = 8/124 (6%)
Query: 2   EGYRSRAEKLKNDVKQMFXXX-XXXXXXXXXIDRICKLGLSYLFEEKIREVLVDTVAFLK 60
           E Y    E LK   + M              ID I +LG+SY FE++I ++L D +    
Sbjct: 40  EKYAKEIEALKEQTRNMLLATGMKLADTLNLIDTIERLGISYHFEKEIDDIL-DQI--YN 96
Query: 61  NDTGCLQVKDLYATALCFKLLRQHGYEISQDVFLDFMDETGTTFSTSKCTDIKGPIELCE 120
            ++ C    DL  +AL F+LLRQHG+ IS ++F  F DE G  F  S  +D+ G + L E
Sbjct: 97  QNSNC---NDLCTSALQFRLLRQHGFNISPEIFSKFQDENG-KFKESLASDVLGLLNLYE 152
Query: 121 ASQL 124
           AS +
Sbjct: 153 ASHV 156

>pdb|1HXG|A Chain A, Crystal Structure Of Teas W273sC440W Length = 548

Iteration: 1
 Score = 65.9 bits (159), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 45/124 (36%), Positives = 64/124 (51%), Gaps = 8/124 (6%)
Query: 2   EGYRSRAEKLKNDVKQMFXXX-XXXXXXXXXIDRICKLGLSYLFEEKIREVLVDTVAFLK 60
           E Y    E LK   + M              ID I +LG+SY FE++I ++L D +    
Sbjct: 40  EKYAKEIEALKEQTRNMLLATGMKLADTLNLIDTIERLGISYHFEKEIDDIL-DQI--YN 96
Query: 61  NDTGCLQVKDLYATALCFKLLRQHGYEISQDVFLDFMDETGTTFSTSKCTDIKGPIELCE 120
            ++ C    DL  +AL F+LLRQHG+ IS ++F  F DE G  F  S  +D+ G + L E
Sbjct: 97  QNSNC---NDLCTSALQFRLLRQHGFNISPEIFSKFQDENG-KFKESLASDVLGLLNLYE 152
Query: 121 ASQL 124
           AS +
Sbjct: 153 ASHV 156

>pdb|3M01|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl Diphosphate Length = 550

Iteration: 1
 Score = 65.9 bits (159), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 45/124 (36%), Positives = 64/124 (51%), Gaps = 8/124 (6%)
Query: 2   EGYRSRAEKLKNDVKQMFXXX-XXXXXXXXXIDRICKLGLSYLFEEKIREVLVDTVAFLK 60
           E Y    E LK   + M              ID I +LG+SY FE++I ++L D +    
Sbjct: 42  EKYAKEIEALKEQTRNMLLATGMKLADTLNLIDTIERLGISYHFEKEIDDIL-DQI--YN 98
Query: 61  NDTGCLQVKDLYATALCFKLLRQHGYEISQDVFLDFMDETGTTFSTSKCTDIKGPIELCE 120
            ++ C    DL  +AL F+LLRQHG+ IS ++F  F DE G  F  S  +D+ G + L E
Sbjct: 99  QNSNC---NDLCTSALQFRLLRQHGFNISPEIFSKFQDENG-KFKESLASDVLGLLNLYE 154
Query: 121 ASQL 124
           AS +
Sbjct: 155 ASHV 158

>pdb|3LZ9|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase M4 Mut Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl Diphospha Length = 550

Iteration: 1
 Score = 65.9 bits (159), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 45/124 (36%), Positives = 64/124 (51%), Gaps = 8/124 (6%)
Query: 2   EGYRSRAEKLKNDVKQMFXXX-XXXXXXXXXIDRICKLGLSYLFEEKIREVLVDTVAFLK 60
           E Y    E LK   + M              ID I +LG+SY FE++I ++L D +    
Sbjct: 42  EKYAKEIEALKEQTRNMLLATGMKLADTLNLIDTIERLGISYHFEKEIDDIL-DQI--YN 98
Query: 61  NDTGCLQVKDLYATALCFKLLRQHGYEISQDVFLDFMDETGTTFSTSKCTDIKGPIELCE 120
            ++ C    DL  +AL F+LLRQHG+ IS ++F  F DE G  F  S  +D+ G + L E
Sbjct: 99  QNSNC---NDLCTSALQFRLLRQHGFNISPEIFSKFQDENG-KFKESLASDVLGLLNLYE 154
Query: 121 ASQL 124
           AS +
Sbjct: 155 ASHV 158

>pdb|5EAU|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum Length = 548

Iteration: 1
 Score = 65.5 bits (158), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 45/124 (36%), Positives = 64/124 (51%), Gaps = 8/124 (6%)
Query: 2   EGYRSRAEKLKNDVKQMFXXX-XXXXXXXXXIDRICKLGLSYLFEEKIREVLVDTVAFLK 60
           E Y    E LK   + M              ID I +LG+SY FE++I ++L D +    
Sbjct: 40  EKYAKEIEALKEQTRNMLLATGMKLADTLNLIDTIERLGISYHFEKEIDDIL-DQI--YN 96
Query: 61  NDTGCLQVKDLYATALCFKLLRQHGYEISQDVFLDFMDETGTTFSTSKCTDIKGPIELCE 120
            ++ C    DL  +AL F+LLRQHG+ IS ++F  F DE G  F  S  +D+ G + L E
Sbjct: 97  QNSNC---NDLCTSALQFRLLRQHGFNISPEIFSKFQDENG-KFKESLASDVLGLLNLYE 152
Query: 121 ASQL 124
           AS +
Sbjct: 153 ASHV 156

>pdb|2ONG|A Chain A, Crystal Structure Of Of Limonene Synthase With 2- Fluorogeranyl Diphosphate (Fgpp). Length = 543

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 43/130 (33%), Positives = 69/130 (53%), Gaps = 5/130 (3%)
Query: 1   EEGYRSRAEKLKNDVKQMFXXXXXXXXXXXXIDRICKLGLSYLFEEKIREVLVDTVA--- 57
           E+ +  RA +L   VK               ID + ++GLS  F+ + +E+L        
Sbjct: 26  EDKHVIRASELVTLVKMELEKETDQIRQLELIDDLQRMGLSDHFQNEFKEILSSIYLDHH 85
Query: 58  FLKNDTGCLQVKDLYATALCFKLLRQHGYEISQDVFLDFMDETGTTFSTSKCTDIKGPIE 117
           + KN     + +DLY+T+L F+LLR+HG++++Q+VF  F +E G  F  S   D +G ++
Sbjct: 86  YYKNPFP-KEERDLYSTSLAFRLLREHGFQVAQEVFDSFKNEEG-EFKESLSDDTRGLLQ 143
Query: 118 LCEASQLALE 127
           L EAS L  E
Sbjct: 144 LYEASFLLTE 153

>pdb|3SAE|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A Prospective Target For Advanced Biofuels Production Length = 817

Iteration: 1
 Score = 52.4 bits (124), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 38/102 (37%), Positives = 53/102 (51%), Gaps = 8/102 (7%)
Query: 32  IDRICKLGLSYLFEEKIREVLVDTVAFLKNDTGC-----LQVKDLYATALCFKLLRQHGY 86
           +D I +LG+   FE++I+E L D V    N+ G        + DL  TAL F+LLR H Y
Sbjct: 305 VDNIVRLGIYRHFEKEIKEAL-DYVYRHWNERGIGWGRLNPIADLETTALGFRLLRLHRY 363
Query: 87  EISQDVFLDFMDETGTTF-STSKCT-DIKGPIELCEASQLAL 126
            +S  +F +F D  G    ST +   D+   + L  ASQLA 
Sbjct: 364 NVSPAIFDNFKDANGKFICSTGQFNKDVASMLNLYRASQLAF 405

>pdb|3P5P|A Chain A, Crystal Structure Of Taxadiene Synthase From Pacific Yew (Taxus Brevifolia) In Complex With Mg2+ And 13-Aza-13,14-Dihydrocopalyl Diphosphate Length = 764

Iteration: 1
 Score = 48.5 bits (114), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 36/102 (35%), Positives = 53/102 (51%), Gaps = 8/102 (7%)
Query: 32  IDRICKLGLSYLFEEKIREVLVDTVAFLKNDTGC-----LQVKDLYATALCFKLLRQHGY 86
           +D I  LG+   F+++I+  L D V    ++ G        V DL  TAL  + LR HGY
Sbjct: 253 VDNIEHLGIGRHFKQEIKGAL-DYVYRHWSERGIGWGRDSLVPDLNTTALGLRTLRMHGY 311
Query: 87  EISQDVFLDFMDETGTTFSTSKCT--DIKGPIELCEASQLAL 126
            +S DV  +F DE G  FS++  T  +++  + L  AS LA 
Sbjct: 312 NVSSDVLNNFKDENGRFFSSAGQTHVELRSVVNLFRASDLAF 353

>pdb|3S9V|A Chain A, Abietadiene Synthase From Abies Grandis Length = 785

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 42/78 (53%), Gaps = 6/78 (7%)
Query: 32  IDRICKLGLSYLFEEKIREVLVDTVAFLKNDTGC-----LQVKDLYATALCFKLLRQHGY 86
           +D + +LG+   F+E+I+E L D V    ++ G        V D+  TA+  ++LR HGY
Sbjct: 277 VDTVERLGIDRHFKEEIKEAL-DYVYSHWDERGIGWARENPVPDIDDTAMGLRILRLHGY 335
Query: 87  EISQDVFLDFMDETGTTF 104
            +S DV   F DE G  F
Sbjct: 336 NVSSDVLKTFRDENGEFF 353
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	127
2j5c_A	569	1,8-cineole synthase; terpene synthases, 1, monote	5e-30
1n1b_A	549	(+)-bornyl diphosphate synthase; terpene synthase	5e-27
2ong_A	543	4S-limonene synthase; monoterpene synthase, monote	1e-25
3n0f_A	555	Isoprene synthase; terpene cyclase fold, hemiterpe	4e-24
3g4d_A	554	(+)-delta-cadinene synthase isozyme XC1; cyclase,	8e-24
3m00_A	550	Aristolochene synthase; plant terpenoid cyclase, l	2e-23
3pya_A	727	ENT-copalyl diphosphate synthase, chloroplastic; c	2e-22
3s9v_A	785	Abietadiene synthase, chloroplastic; alpha bundle/	4e-18
3p5p_A	764	Taxadiene synthase; class I and II terpene cyclase	6e-18
3sdr_A	817	Alpha-bisabolene synthase; lyase, terpene synthase	5e-17
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-05

>2j5c_A 1,8-cineole synthase; terpene synthases, 1, monoterpene, lyase; 1.95A {Salvia fruticosa} Length = 569

 Score =  111 bits (278), Expect = 5e-30
 Identities = 50/127 (39%), Positives = 75/127 (59%), Gaps = 4/127 (3%)

Query: 1   EEGYRSRAEKLKNDVKQMFLEAADLLAKLELIDRICKLGLSYLFEEKIREVLVDTVAFLK 60
           EE +  RA  + + VK M  E  D + +LELID + +LG+S  FE +I E+L     +  
Sbjct: 59  EEKHLMRAAGMIDQVKMMLQEEVDSIRRLELIDDLRRLGISCHFEREIVEILNSK--YYT 116

Query: 61  NDTGCLQVKDLYATALCFKLLRQHGYEISQDVFLDFMDETGTTFSTSKCTDIKGPIELCE 120
           N+      +DLY+TAL F+LLRQ+ + +SQ+VF  F +  GT F  S   D +G ++L E
Sbjct: 117 NNEI--DERDLYSTALRFRLLRQYDFSVSQEVFDCFKNAKGTDFKPSLVDDTRGLLQLYE 174

Query: 121 ASQLALE 127
           AS L+ +
Sbjct: 175 ASFLSAQ 181

>1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase; 2.00A {Salvia officinalis} SCOP: a.102.4.1 a.128.1.3 PDB: 1n1z_A* 1n20_A* 1n21_A* 1n22_A* 1n23_A* 1n24_A* Length = 549

 Score =  102 bits (256), Expect = 5e-27
 Identities = 50/128 (39%), Positives = 71/128 (55%), Gaps = 1/128 (0%)

Query: 1   EEGYRSRAEKLKNDVKQMFLEAADLLAKLELIDRICKLGLSYLFEEKIREVLVDT-VAFL 59
           EE +  R  +L   V+ +  E  + + +LELI  +  LGLS  F+++I+E+L        
Sbjct: 30  EERHLDRKAELIVQVRILLKEKMEPVQQLELIHDLKYLGLSDFFQDEIKEILGVIYNEHK 89

Query: 60  KNDTGCLQVKDLYATALCFKLLRQHGYEISQDVFLDFMDETGTTFSTSKCTDIKGPIELC 119
                 ++  DLY TAL F+LLRQHG+ ISQDVF  F +E G  F  S   D KG ++L 
Sbjct: 90  CFHNNEVEKMDLYFTALGFRLLRQHGFNISQDVFNCFKNEKGIDFKASLAQDTKGMLQLY 149

Query: 120 EASQLALE 127
           EAS L  +
Sbjct: 150 EASFLLRK 157

>2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase, geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB: 2onh_A* Length = 543

 Score = 99.5 bits (247), Expect = 1e-25
 Identities = 44/126 (34%), Positives = 74/126 (58%), Gaps = 3/126 (2%)

Query: 1   EEGYRSRAEKLKNDVKQMFLEAADLLAKLELIDRICKLGLSYLFEEKIREVL--VDTVAF 58
           E+ +  RA +L   VK    +  D + +LELID + ++GLS  F+ + +E+L  +     
Sbjct: 26  EDKHVIRASELVTLVKMELEKETDQIRQLELIDDLQRMGLSDHFQNEFKEILSSIYLDHH 85

Query: 59  LKNDTGCLQVKDLYATALCFKLLRQHGYEISQDVFLDFMDETGTTFSTSKCTDIKGPIEL 118
              +    + +DLY+T+L F+LLR+HG++++Q+VF  F +E G  F  S   D +G ++L
Sbjct: 86  YYKNPFPKEERDLYSTSLAFRLLREHGFQVAQEVFDSFKNEEG-EFKESLSDDTRGLLQL 144

Query: 119 CEASQL 124
            EAS L
Sbjct: 145 YEASFL 150

>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A* Length = 555

 Score = 94.9 bits (235), Expect = 4e-24
 Identities = 53/128 (41%), Positives = 72/128 (56%), Gaps = 4/128 (3%)

Query: 1   EEGYRSRAEKLKNDVKQMFLEAA-DLLAKLELIDRICKLGLSYLFEEKIREVLVDTVAFL 59
            E Y+ +A+KL+ +V++       + L  LELID + +LGL Y FE  IR  L   V+  
Sbjct: 39  IEVYKDKAKKLEAEVRREINNEKAEFLTLLELIDNVQRLGLGYRFESDIRRALDRFVSSG 98

Query: 60  KNDTGCLQVKDLYATALCFKLLRQHGYEISQDVFLDFMDETGTTFSTSKCTDIKGPIELC 119
             D        L+ATAL F+LLRQHG+E+SQ+ F  F D+ G  F  +   D K  + L 
Sbjct: 99  GFDGVT--KTSLHATALSFRLLRQHGFEVSQEAFSGFKDQNG-NFLENLKEDTKAILSLY 155

Query: 120 EASQLALE 127
           EAS LALE
Sbjct: 156 EASFLALE 163

>3g4d_A (+)-delta-cadinene synthase isozyme XC1; cyclase, lyase, magnesium, metal-binding; 2.40A {Gossypium arboreum} PDB: 3g4f_A* Length = 554

 Score = 94.1 bits (233), Expect = 8e-24
 Identities = 47/128 (36%), Positives = 75/128 (58%), Gaps = 7/128 (5%)

Query: 1   EEGYRSRAEKLKNDVKQMFLE-AADLLAKLELIDRICKLGLSYLFEEKIREVLVDTVAFL 59
           +     R ++LK +V++M +   A+   KL  ID + +LG+SY F ++I + L + +   
Sbjct: 45  DAETEKRHQQLKEEVRKMIVAPMANSTQKLAFIDSVQRLGVSYHFTKEIEDEL-ENIYHN 103

Query: 60  KNDTGCLQVKDLYATALCFKLLRQHGYEISQDVFLDFMDETGTTFSTSKCTDIKGPIELC 119
            ND       DLY T++ F+LLR+HGY +S DVF  F DE G  F +S  +D++G +EL 
Sbjct: 104 NND----AENDLYTTSIRFRLLREHGYNVSCDVFNKFKDEQG-NFKSSVTSDVRGLLELY 158

Query: 120 EASQLALE 127
           +AS L + 
Sbjct: 159 QASYLRVH 166

>3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A* 1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A* Length = 550

 Score = 93.3 bits (231), Expect = 2e-23
 Identities = 48/128 (37%), Positives = 66/128 (51%), Gaps = 8/128 (6%)

Query: 1   EEGYRSRAEKLKNDVKQMFLEAA-DLLAKLELIDRICKLGLSYLFEEKIREVLVDTVAFL 59
            E Y    E LK   + M L     L   L LID I +LG+SY FE++I ++L     + 
Sbjct: 41  AEKYAKEIEALKEQTRNMLLATGMKLADTLNLIDTIERLGISYHFEKEIDDILDQI--YN 98

Query: 60  KNDTGCLQVKDLYATALCFKLLRQHGYEISQDVFLDFMDETGTTFSTSKCTDIKGPIELC 119
           +N        DL  +AL F+LLRQHG+ IS ++F  F DE G  F  S  +D+ G + L 
Sbjct: 99  QNS----NCNDLCTSALQFRLLRQHGFNISPEIFSKFQDENG-KFKESLASDVLGLLNLY 153

Query: 120 EASQLALE 127
           EAS +   
Sbjct: 154 EASHVRTH 161

>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A* Length = 727

 Score = 90.3 bits (223), Expect = 2e-22
 Identities = 44/132 (33%), Positives = 67/132 (50%), Gaps = 7/132 (5%)

Query: 1   EEGYRSRAEKLKNDVKQMFLEAADLLAKLELIDRICKLGLSYLFEEKIREVLVDTVAFLK 60
            E  R+  ++    V  +F    DL   + ++DR+ +LG+S  FEE+I+E L     +  
Sbjct: 223 LEYLRNAVKRFNGGVPNVF--PVDLFEHIWIVDRLQRLGISRYFEEEIKECLDYVHRYWT 280

Query: 61  NDTGCL----QVKDLYATALCFKLLRQHGYEISQDVFLDFMDETGT-TFSTSKCTDIKGP 115
           ++  C      V+D+  TA+ F+LLRQHGY++S DVF +F  E     F       + G 
Sbjct: 281 DNGICWARCSHVQDIDDTAMAFRLLRQHGYQVSADVFKNFEKEGEFFCFVGQSNQAVTGM 340

Query: 116 IELCEASQLALE 127
             L  ASQLA  
Sbjct: 341 FNLYRASQLAFP 352

>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis} Length = 785

 Score = 78.0 bits (191), Expect = 4e-18
 Identities = 31/133 (23%), Positives = 53/133 (39%), Gaps = 11/133 (8%)

Query: 4   YRSRAEKLKNDVKQMFLEAA------DLLAKLELIDRICKLGLSYLFEEKIREVLVDTVA 57
              +     N V + F          DL  +L  +D + +LG+   F+E+I+E L    +
Sbjct: 243 GNKKCLDFLNFVLKKFGNHVPCHYPLDLFERLWAVDTVERLGIDRHFKEEIKEALDYVYS 302

Query: 58  FLKNDTGC----LQVKDLYATALCFKLLRQHGYEISQDVFLDFMDETGTTFSTSKCTDIK 113
                         V D+  TA+  ++LR HGY +S DV   F DE    F        +
Sbjct: 303 HWDERGIGWARENPVPDIDDTAMGLRILRLHGYNVSSDVLKTFRDE-NGEFFCFLGQTQR 361

Query: 114 GPIELCEASQLAL 126
           G  ++   ++ + 
Sbjct: 362 GVTDMLNVNRCSH 374

>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A* Length = 764

 Score = 77.2 bits (189), Expect = 6e-18
 Identities = 38/130 (29%), Positives = 57/130 (43%), Gaps = 10/130 (7%)

Query: 1   EEGYRSRAEKLKNDVKQMFLEAADLLAKLELIDRICKLGLSYLFEEKIREVLVDTVAFLK 60
                +  +K    V  M+  + DLL +L L+D I  LG+   F+++I+  L        
Sbjct: 224 FTFLNNLLDKFGGCVPCMY--SIDLLERLSLVDNIEHLGIGRHFKQEIKGALDYVYRHWS 281

Query: 61  NDTGC----LQVKDLYATALCFKLLRQHGYEISQDVFLDFMDETGTTFSTSKC---TDIK 113
                      V DL  TAL  + LR HGY +S DV  +F DE G  F +S      +++
Sbjct: 282 ERGIGWGRDSLVPDLNTTALGLRTLRMHGYNVSSDVLNNFKDENG-RFFSSAGQTHVELR 340

Query: 114 GPIELCEASQ 123
             + L  AS 
Sbjct: 341 SVVNLFRASD 350

>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A* Length = 817

 Score = 75.0 bits (183), Expect = 5e-17
 Identities = 41/131 (31%), Positives = 60/131 (45%), Gaps = 8/131 (6%)

Query: 1   EEGYRSRAEKLKNDVKQMFLEAADLLAKLELIDRICKLGLSYLFEEKIREVLVDTVAFLK 60
            E   S   K  N V  ++    DLL +L ++D I +LG+   FE++I+E L        
Sbjct: 276 LEFLNSVMIKFGNFVPCLY--PVDLLERLLIVDNIVRLGIYRHFEKEIKEALDYVYRHWN 333

Query: 61  NDTGC----LQVKDLYATALCFKLLRQHGYEISQDVFLDFMDETGTTFSTSKCT--DIKG 114
                      + DL  TAL F+LLR H Y +S  +F +F D  G    ++     D+  
Sbjct: 334 ERGIGWGRLNPIADLETTALGFRLLRLHRYNVSPAIFDNFKDANGKFICSTGQFNKDVAS 393

Query: 115 PIELCEASQLA 125
            + L  ASQLA
Sbjct: 394 MLNLYRASQLA 404

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.4 bits (96), Expect = 2e-05
 Identities = 27/136 (19%), Positives = 44/136 (32%), Gaps = 26/136 (19%)

Query: 9   EKLKNDVKQMFLEAADLLAKLELIDRICKLGLSYLFEEKI--REVLV-DTV-------AF 58
           +KL   +   +   +D  + ++L     +  L  L + K     +LV   V       AF
Sbjct: 203 QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF 262

Query: 59  LKNDTGCLQVKDLYAT---ALCFKLLRQHGYEISQDVFLDFM--DETGTTFSTSKCTDIK 113
              +  C   K L  T    +   L       IS D     +  DE  +     K  D +
Sbjct: 263 ---NLSC---KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLL--LKYLDCR 314

Query: 114 G---PIELCEASQLAL 126
               P E+   +   L
Sbjct: 315 PQDLPREVLTTNPRRL 330

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 39.8 bits (92), Expect = 7e-05
 Identities = 23/111 (20%), Positives = 39/111 (35%), Gaps = 29/111 (26%)

Query: 26  LAKLELIDRICKLGLSYL---F-EEKIREVLVDTVAFLKNDTGCLQVKDLYATALCFKLL 81
           L  +E  +R+    + +L   F E+KIR           + T       +  T    K  
Sbjct: 481 LKNIEHPERMTLFRMVFLDFRFLEQKIR----------HDSTAWNASGSILNTLQQLKFY 530

Query: 82  RQH------GYEISQDVFLDFMDETGTTFSTSKCTDIKGPIELCEASQLAL 126
           + +       YE   +  LDF+ +       SK TD+          ++AL
Sbjct: 531 KPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDL---------LRIAL 572

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	127
2ong_A	543	4S-limonene synthase; monoterpene synthase, monote	100.0
3n0f_A	555	Isoprene synthase; terpene cyclase fold, hemiterpe	100.0
3m00_A	550	Aristolochene synthase; plant terpenoid cyclase, l	100.0
1n1b_A	549	(+)-bornyl diphosphate synthase; terpene synthase	100.0
3g4d_A	554	(+)-delta-cadinene synthase isozyme XC1; cyclase,	100.0
2j5c_A	569	1,8-cineole synthase; terpene synthases, 1, monote	100.0
3p5p_A	764	Taxadiene synthase; class I and II terpene cyclase	100.0
3sdr_A	817	Alpha-bisabolene synthase; lyase, terpene synthase	100.0
3s9v_A	785	Abietadiene synthase, chloroplastic; alpha bundle/	100.0
3pya_A	727	ENT-copalyl diphosphate synthase, chloroplastic; c	100.0

>2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase, geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB: 2onh_A*

Probab=100.00  E-value=3.6e-46  Score=323.50  Aligned_cols=125  Identities=35%  Similarity=0.529  Sum_probs=112.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHhhhcHhhhHHHHHHHHHhCcchhhHHHHHHHHHHHHHhhcccCCC-CC-CCChHHHHHHHH
Q 038162            2 EGYRSRAEKLKNDVKQMFLEAADLLAKLELIDRICKLGLSYLFEEKIREVLVDTVAFLKNDTGC-LQ-VKDLYATALCFK   79 (127)
Q Consensus         2 ~~~~~~~~~LkeeVk~~l~~~~~~~~~L~lID~lqRLGi~yhFe~EI~~~L~~i~~~~~~~~~~-~~-~~dL~~~AL~FR   79 (127)
                      +.+.+++++||++||+|+.+..|++++|++||+||||||+|||++||+++|+.||++|..+... .. ..|||+|||+||
T Consensus        27 ~~~~~~~~~Lk~~V~~~~~~~~d~~~~l~liD~lqrLGi~~hF~~EI~~~L~~i~~~~~~~~~~~~~~~~dl~~~al~FR  106 (543)
T 2ong_A           27 DKHVIRASELVTLVKMELEKETDQIRQLELIDDLQRMGLSDHFQNEFKEILSSIYLDHHYYKNPFPKEERDLYSTSLAFR  106 (543)
T ss_dssp             THHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTGGGTTHHHHHHHHHHHHHTTTCCCSSCCCCCCCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCchhhhHHHHHHHHHHHHHhhcccccccccccCCHHHHHHHHH
Confidence            3578999999999999998777999999999999999999999999999999999766431100 11 269999999999


Q ss_pred             HHHhcCcceehhhhhccccccccccccccccchHHHHHHhHhhccCCC
Q 038162           80 LLRQHGYEISQDVFLDFMDETGTTFSTSKCTDIKGPIELCEASQLALE  127 (127)
Q Consensus        80 LLRqhGy~VS~DvF~~F~d~~G~~F~~~l~~DvkglL~LYeAS~L~~~  127 (127)
                      |||||||+||||||++|||++| +|++++.+||+|||||||||||+++
T Consensus       107 lLR~hGy~vs~dvf~~Fk~~~g-~F~~~l~~d~~glL~Ly~As~l~~~  153 (543)
T 2ong_A          107 LLREHGFQVAQEVFDSFKNEEG-EFKESLSDDTRGLLQLYEASFLLTE  153 (543)
T ss_dssp             HHHHTTCCCCGGGGGGGBCTTS-SBCTTGGGCHHHHHHHHHHHTTCCS
T ss_pred             HHHHcCCCccHHHHhcccCCCC-CccchhhhccHHHHHHHHHHHcCCC
Confidence            9999999999999999999999 9999999999999999999999985

>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A*

Probab=100.00  E-value=9.4e-46  Score=322.53  Aligned_cols=123  Identities=42%  Similarity=0.603  Sum_probs=110.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHhhh-cHhhhHHHHHHHHHhCcchhhHHHHHHHHHHHHHhhcccCCCCCCCChHHHHHHHHH
Q 038162            2 EGYRSRAEKLKNDVKQMFLEAA-DLLAKLELIDRICKLGLSYLFEEKIREVLVDTVAFLKNDTGCLQVKDLYATALCFKL   80 (127)
Q Consensus         2 ~~~~~~~~~LkeeVk~~l~~~~-~~~~~L~lID~lqRLGi~yhFe~EI~~~L~~i~~~~~~~~~~~~~~dL~~~AL~FRL   80 (127)
                      +.+.+|+++||++||+||.+.. +++++|++||+||||||+|||++||+++|+.||+....  .+....|||+|||+|||
T Consensus        40 ~~~~~~~e~Lk~eVr~~l~~~~~~~~~~L~lID~lqRLGi~~hF~~EI~~~L~~i~~~~~~--~~~~~~DL~~~Al~FRL  117 (555)
T 3n0f_A           40 EVYKDKAKKLEAEVRREINNEKAEFLTLLELIDNVQRLGLGYRFESDIRRALDRFVSSGGF--DGVTKTSLHATALSFRL  117 (555)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHTTCGGGSHHHHHHHHHHHHHTCHH--HHHTTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHHHhhccc--cccccCCHHHHHHHHHH
Confidence            4678999999999999997666 89999999999999999999999999999999953110  00011699999999999


Q ss_pred             HHhcCcceehhhhhccccccccccccccccchHHHHHHhHhhccCCC
Q 038162           81 LRQHGYEISQDVFLDFMDETGTTFSTSKCTDIKGPIELCEASQLALE  127 (127)
Q Consensus        81 LRqhGy~VS~DvF~~F~d~~G~~F~~~l~~DvkglL~LYeAS~L~~~  127 (127)
                      ||||||+||||||++|+|++| +|++++.+||+|||+|||||||+++
T Consensus       118 LR~hGy~VS~dvF~~F~d~~G-~F~~~l~~dv~glL~LYeAs~l~~~  163 (555)
T 3n0f_A          118 LRQHGFEVSQEAFSGFKDQNG-NFLENLKEDTKAILSLYEASFLALE  163 (555)
T ss_dssp             HHHTTCCCCGGGGGGGBCTTS-CBCGGGGGCHHHHHHHHHHHTTCCT
T ss_pred             HHhcCCCcChHHHhcccccCc-cchhhhhhhhHHHHHHHHHHhcccC
Confidence            999999999999999999999 9999999999999999999999985

>3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A* 1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A*

Probab=100.00  E-value=1e-45  Score=322.05  Aligned_cols=119  Identities=40%  Similarity=0.652  Sum_probs=110.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHh-hhcHhhhHHHHHHHHHhCcchhhHHHHHHHHHHHHHhhcccCCCCCCCChHHHHHHHHH
Q 038162            2 EGYRSRAEKLKNDVKQMFLE-AADLLAKLELIDRICKLGLSYLFEEKIREVLVDTVAFLKNDTGCLQVKDLYATALCFKL   80 (127)
Q Consensus         2 ~~~~~~~~~LkeeVk~~l~~-~~~~~~~L~lID~lqRLGi~yhFe~EI~~~L~~i~~~~~~~~~~~~~~dL~~~AL~FRL   80 (127)
                      +.+.+|+++||++||+||.+ ..+++++|+|||+||||||+|||++||+++|++||++|..     . .|||+|||+|||
T Consensus        42 ~~~~~~~e~Lk~eVr~~l~~~~~~~~~~L~lID~lqrLGi~~hF~~EI~~~L~~i~~~~~~-----~-~dl~~~al~FRL  115 (550)
T 3m00_A           42 EKYAKEIEALKEQTRNMLLATGMKLADTLNLIDTIERLGISYHFEKEIDDILDQIYNQNSN-----C-NDLCTSALQFRL  115 (550)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHTTCGGGCHHHHHHHHHHHHHHCCC-----C-SSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHHHHhccc-----C-CCHHHHHHHHHH
Confidence            45788999999999999975 5799999999999999999999999999999999976532     2 699999999999


Q ss_pred             HHhcCcceehhhhhccccccccccccccccchHHHHHHhHhhccCCC
Q 038162           81 LRQHGYEISQDVFLDFMDETGTTFSTSKCTDIKGPIELCEASQLALE  127 (127)
Q Consensus        81 LRqhGy~VS~DvF~~F~d~~G~~F~~~l~~DvkglL~LYeAS~L~~~  127 (127)
                      ||||||+||||||++|+|++| +|++++.+||+|||+|||||||+++
T Consensus       116 LR~hGy~VS~dvf~~F~~~~G-~F~~~l~~d~~glL~LYeAs~l~~~  161 (550)
T 3m00_A          116 LRQHGFNISPEIFSKFQDENG-KFKESLASDVLGLLNLYEASHVRTH  161 (550)
T ss_dssp             HHHTTCCCCGGGGGGGBCTTS-CBCGGGGGCHHHHHHHHHHHTTCCT
T ss_pred             HHhcCCCCChHHhhhccccCC-CccccchhchHHHHHHHHHHhcCCC
Confidence            999999999999999999999 9999999999999999999999985

>1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase; 2.00A {Salvia officinalis} SCOP: a.102.4.1 a.128.1.3 PDB: 1n1z_A* 1n20_A* 1n21_A* 1n22_A* 1n23_A* 1n24_A*

Probab=100.00  E-value=1.2e-45  Score=320.89  Aligned_cols=126  Identities=40%  Similarity=0.511  Sum_probs=112.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHhhhcHhhhHHHHHHHHHhCcchhhHHHHHHHHHHHHHhhcccC-CCCCCCChHHHHHHHHH
Q 038162            2 EGYRSRAEKLKNDVKQMFLEAADLLAKLELIDRICKLGLSYLFEEKIREVLVDTVAFLKNDT-GCLQVKDLYATALCFKL   80 (127)
Q Consensus         2 ~~~~~~~~~LkeeVk~~l~~~~~~~~~L~lID~lqRLGi~yhFe~EI~~~L~~i~~~~~~~~-~~~~~~dL~~~AL~FRL   80 (127)
                      +.+.+++++||++||+|+.+..|++++|++||+||||||+|||++||+++|++||+++.... ......|||+|||+|||
T Consensus        31 ~~~~~~~~~Lk~~V~~~~~~~~d~~~~l~lvD~lqrLGi~~hF~~EI~~~L~~i~~~~~~~~~~~~~~~dl~~~al~FRl  110 (549)
T 1n1b_A           31 ERHLDRKAELIVQVRILLKEKMEPVQQLELIHDLKYLGLSDFFQDEIKEILGVIYNEHKCFHNNEVEKMDLYFTALGFRL  110 (549)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHHHCHHHHHCCCCSCCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHhcccCHHHHHHhHHHHHhCCchhhhHHHHHHHHHHHHhhhccccccccccCChhhchhhhhH
Confidence            35789999999999999987679999999999999999999999999999999997542200 11012699999999999


Q ss_pred             HHhcCcceehhhhhccccccccccccccccchHHHHHHhHhhccCCC
Q 038162           81 LRQHGYEISQDVFLDFMDETGTTFSTSKCTDIKGPIELCEASQLALE  127 (127)
Q Consensus        81 LRqhGy~VS~DvF~~F~d~~G~~F~~~l~~DvkglL~LYeAS~L~~~  127 (127)
                      ||||||+||||||++|||++|++|++++.+||+|||||||||||+++
T Consensus       111 LR~hGy~Vs~dvf~~Fk~~~g~~F~~~l~~d~~glL~LY~As~l~~~  157 (549)
T 1n1b_A          111 LRQHGFNISQDVFNCFKNEKGIDFKASLAQDTKGMLQLYEASFLLRK  157 (549)
T ss_dssp             HHHTTCCCCGGGGGGGBCTTSSSBCGGGGGCHHHHHHHHHHHTTCCT
T ss_pred             HHhcCCCcCHHHHhhccCCCCCccchhhhhccHHHHHHHHHHhcCCC
Confidence            99999999999999999999878999999999999999999999985

>3g4d_A (+)-delta-cadinene synthase isozyme XC1; cyclase, lyase, magnesium, metal-binding; 2.40A {Gossypium arboreum} PDB: 3g4f_A*

Probab=100.00  E-value=2.1e-45  Score=320.29  Aligned_cols=120  Identities=38%  Similarity=0.656  Sum_probs=110.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHh-hhcHhhhHHHHHHHHHhCcchhhHHHHHHHHHHHHHhhcccCCCCCCCChHHHHHHHHH
Q 038162            2 EGYRSRAEKLKNDVKQMFLE-AADLLAKLELIDRICKLGLSYLFEEKIREVLVDTVAFLKNDTGCLQVKDLYATALCFKL   80 (127)
Q Consensus         2 ~~~~~~~~~LkeeVk~~l~~-~~~~~~~L~lID~lqRLGi~yhFe~EI~~~L~~i~~~~~~~~~~~~~~dL~~~AL~FRL   80 (127)
                      +.+.+|+++||++||+||.+ ..+++++|+|||+||||||+|||++||+++|++||++  .  .... .|||+|||+|||
T Consensus        46 ~~~~~~~e~Lk~eVr~~l~~~~~~~~~~l~lID~lqrLGi~~hF~~EI~~~L~~i~~~--~--~~~~-~dl~~~al~FRl  120 (554)
T 3g4d_A           46 AETEKRHQQLKEEVRKMIVAPMANSTQKLAFIDSVQRLGVSYHFTKEIEDELENIYHN--N--NDAE-NDLYTTSIRFRL  120 (554)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSCCSSHHHHHHHHHHHHHTTCGGGCHHHHHHHHHHHHHS--C--CCTT-CCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHHHhc--c--CCCC-CCHHHHHHHHHH
Confidence            46789999999999999975 5799999999999999999999999999999999954  2  2112 699999999999


Q ss_pred             HHhcCcceehhhhhccccccccccccccccchHHHHHHhHhhccCCC
Q 038162           81 LRQHGYEISQDVFLDFMDETGTTFSTSKCTDIKGPIELCEASQLALE  127 (127)
Q Consensus        81 LRqhGy~VS~DvF~~F~d~~G~~F~~~l~~DvkglL~LYeAS~L~~~  127 (127)
                      ||||||+||||||++|+|++| +|++++.+||+|||+|||||||+++
T Consensus       121 LR~hGy~VS~dvf~~F~~~~g-~F~~~l~~d~~glL~LYeAs~l~~~  166 (554)
T 3g4d_A          121 LREHGYNVSCDVFNKFKDEQG-NFKSSVTSDVRGLLELYQASYLRVH  166 (554)
T ss_dssp             HHHTTCCCCGGGGGGGBCTTS-SBCHHHHHCHHHHHHHHHHHTTCCT
T ss_pred             HHhcCCCCChhHHhhhcccCC-CcccccccchHHHHHHHHHHhCCCC
Confidence            999999999999999999999 9999999999999999999999985

>2j5c_A 1,8-cineole synthase; terpene synthases, 1, monoterpene, lyase; 1.95A {Salvia fruticosa}

Probab=100.00  E-value=3.7e-45  Score=319.02  Aligned_cols=121  Identities=40%  Similarity=0.563  Sum_probs=110.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHhhhcHhhhHHHHHHHHHhCcchhhHHHHHHHHHHHH-HhhcccCCCCCCCChHHHHHHHHH
Q 038162            2 EGYRSRAEKLKNDVKQMFLEAADLLAKLELIDRICKLGLSYLFEEKIREVLVDTV-AFLKNDTGCLQVKDLYATALCFKL   80 (127)
Q Consensus         2 ~~~~~~~~~LkeeVk~~l~~~~~~~~~L~lID~lqRLGi~yhFe~EI~~~L~~i~-~~~~~~~~~~~~~dL~~~AL~FRL   80 (127)
                      +.+.+++++||++||+|+.+..|++++|++||+||||||+|||++||+++|+.|| +++.    + ...|||+|||+|||
T Consensus        60 ~~~~~~~~~Lk~~Vr~~~~~~~d~~~~l~lID~lqrLGi~~hFe~EI~~~L~~i~~~~~~----~-~~~Dl~~~al~FRl  134 (569)
T 2j5c_A           60 EKHLMRAAGMIDQVKMMLQEEVDSIRRLELIDDLRRLGISCHFEREIVEILNSKYYTNNE----I-DERDLYSTALRFRL  134 (569)
T ss_dssp             --CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTSSCC----S-CTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhCCchhhhHHHHHHHHHHHHHhccC----c-ccCChhhhhHHhHH
Confidence            3577899999999999998777999999999999999999999999999999998 5422    1 12699999999999


Q ss_pred             HHhcCcceehhhhhccccccccccccccccchHHHHHHhHhhccCCC
Q 038162           81 LRQHGYEISQDVFLDFMDETGTTFSTSKCTDIKGPIELCEASQLALE  127 (127)
Q Consensus        81 LRqhGy~VS~DvF~~F~d~~G~~F~~~l~~DvkglL~LYeAS~L~~~  127 (127)
                      ||||||+||||||++|||++|++|++++.+||+|||||||||||+++
T Consensus       135 LR~hGy~Vs~dvF~~Fkd~~G~~F~~~l~~dv~glL~LY~As~l~~~  181 (569)
T 2j5c_A          135 LRQYDFSVSQEVFDCFKNAKGTDFKPSLVDDTRGLLQLYEASFLSAQ  181 (569)
T ss_dssp             HHHTTCCCCGGGGGGGBCSSSSSBCGGGGGCHHHHHHHHHHHTTCCT
T ss_pred             HHhcCCCcCHHHHhcccCCCCCccccchhhccHHHHHHHHHHhcCCC
Confidence            99999999999999999999879999999999999999999999985

>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A*

Probab=100.00  E-value=3.2e-35  Score=263.67  Aligned_cols=104  Identities=37%  Similarity=0.569  Sum_probs=92.1

Q ss_pred             hcHhhhHHHHHHHHHhCcchhhHHHHHHHHHHHHHhhccc-CCC--CC-CCChHHHHHHHHHHHhcCcceehhhhhcccc
Q 038162           23 ADLLAKLELIDRICKLGLSYLFEEKIREVLVDTVAFLKND-TGC--LQ-VKDLYATALCFKLLRQHGYEISQDVFLDFMD   98 (127)
Q Consensus        23 ~~~~~~L~lID~lqRLGi~yhFe~EI~~~L~~i~~~~~~~-~~~--~~-~~dL~~~AL~FRLLRqhGy~VS~DvF~~F~d   98 (127)
                      .+++++|++||+||||||+|||++||+++|+.||++|... .+.  .+ ..||++|||+|||||||||+||||||++|+|
T Consensus       244 ~d~~e~l~lID~LqrLGi~~hF~~EI~~~L~~i~~~~~~~gi~~~~~~~~~Dl~~tAl~FRlLR~~Gy~VS~dvf~~F~d  323 (764)
T 3p5p_A          244 IDLLERLSLVDNIEHLGIGRHFKQEIKGALDYVYRHWSERGIGWGRDSLVPDLNTTALGLRTLRMHGYNVSSDVLNNFKD  323 (764)
T ss_dssp             CHHHHHHHHHHHHHHHTCGGGGHHHHHHHHHHHHHTCCTTCCCSSTTCSSCCHHHHHHHHHHHHHTTCCCCGGGGGGGBC
T ss_pred             CcHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHhhhcccccccCCCCCCHHHHHHHHHHHHhcCCCccHhHHHhhhc
Confidence            5899999999999999999999999999999999866431 010  11 2599999999999999999999999999999


Q ss_pred             ccccccccc---cccchHHHHHHhHhhccCCC
Q 038162           99 ETGTTFSTS---KCTDIKGPIELCEASQLALE  127 (127)
Q Consensus        99 ~~G~~F~~~---l~~DvkglL~LYeAS~L~~~  127 (127)
                      ++| +|+.+   +.+|++|||+|||||||+++
T Consensus       324 ~~g-~F~~~~~~~~~dv~gmL~LYeAS~l~~~  354 (764)
T 3p5p_A          324 ENG-RFFSSAGQTHVELRSVVNLFRASDLAFP  354 (764)
T ss_dssp             TTS-CBCSCTTCSCCCHHHHHHHHHHHTTCCT
T ss_pred             CCC-CccccccccccccHHHHHHHHHHhCCCC
Confidence            999 99874   68999999999999999985

>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A*

Probab=100.00  E-value=2.2e-35  Score=266.25  Aligned_cols=104  Identities=38%  Similarity=0.600  Sum_probs=90.2

Q ss_pred             hcHhhhHHHHHHHHHhCcchhhHHHHHHHHHHHHHhhccc-CCC--CC-CCChHHHHHHHHHHHhcCcceehhhhhcccc
Q 038162           23 ADLLAKLELIDRICKLGLSYLFEEKIREVLVDTVAFLKND-TGC--LQ-VKDLYATALCFKLLRQHGYEISQDVFLDFMD   98 (127)
Q Consensus        23 ~~~~~~L~lID~lqRLGi~yhFe~EI~~~L~~i~~~~~~~-~~~--~~-~~dL~~~AL~FRLLRqhGy~VS~DvF~~F~d   98 (127)
                      .+++++|++||+||||||+|||++||+++|+.||++|... .+.  .+ ..||++|||+|||||||||+||||||++|+|
T Consensus       296 ~d~~e~l~lID~LqrLGi~~hF~~EI~~~L~~i~~~~~~~gi~~~~~~~~~Dl~~tAl~FRlLR~~Gy~VS~dvf~~F~d  375 (817)
T 3sdr_A          296 VDLLERLLIVDNIVRLGIYRHFEKEIKEALDYVYRHWNERGIGWGRLNPIADLETTALGFRLLRLHRYNVSPAIFDNFKD  375 (817)
T ss_dssp             CHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHHHCCTTCCCSSTTCSSCCHHHHHHHHHHHHHTTCCCCGGGGGGGBC
T ss_pred             CcHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHhhhcccccccCCCCCCHHHHHHHHHHHHHcCCCccHhHHHHHhh
Confidence            5899999999999999999999999999999999866531 010  11 2599999999999999999999999999999


Q ss_pred             cccccccccc---ccchHHHHHHhHhhccCCC
Q 038162           99 ETGTTFSTSK---CTDIKGPIELCEASQLALE  127 (127)
Q Consensus        99 ~~G~~F~~~l---~~DvkglL~LYeAS~L~~~  127 (127)
                      ++| +|+.++   .+||+|||+|||||||+++
T Consensus       376 ~~g-~F~~~~~~~~~dv~gmL~LYeAS~l~~~  406 (817)
T 3sdr_A          376 ANG-KFICSTGQFNKDVASMLNLYRASQLAFP  406 (817)
T ss_dssp             C---CBCCCSSCHHHHHHHHHHHHHHHTTCCT
T ss_pred             cCC-CceechhhhchhhHHHHHHHHHHhcCCC
Confidence            999 999865   5899999999999999985

>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis}

Probab=100.00  E-value=3.8e-35  Score=263.83  Aligned_cols=104  Identities=29%  Similarity=0.476  Sum_probs=92.2

Q ss_pred             hcHhhhHHHHHHHHHhCcchhhHHHHHHHHHHHHHhhcccC-CC--CC-CCChHHHHHHHHHHHhcCcceehhhhhcccc
Q 038162           23 ADLLAKLELIDRICKLGLSYLFEEKIREVLVDTVAFLKNDT-GC--LQ-VKDLYATALCFKLLRQHGYEISQDVFLDFMD   98 (127)
Q Consensus        23 ~~~~~~L~lID~lqRLGi~yhFe~EI~~~L~~i~~~~~~~~-~~--~~-~~dL~~~AL~FRLLRqhGy~VS~DvF~~F~d   98 (127)
                      .+++++|++||+||||||+|||++||+++|+.||++|.... +.  .+ ..||++|||+|||||||||+||||||++|+|
T Consensus       268 ~d~~e~l~lID~LqrLGi~~hF~~EI~~~L~~i~~~~~~~gi~~~~~~~~~Dl~~tAl~FRlLR~~Gy~VS~dvf~~F~d  347 (785)
T 3s9v_A          268 LDLFERLWAVDTVERLGIDRHFKEEIKEALDYVYSHWDERGIGWARENPVPDIDDTAMGLRILRLHGYNVSSDVLKTFRD  347 (785)
T ss_dssp             CHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTCCTTCCCSSTTCSSCCHHHHHHHHHHHHHTTCCCCGGGGGGGBC
T ss_pred             CcHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHhhhccccccccCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHh
Confidence            48999999999999999999999999999999997664310 10  11 1599999999999999999999999999999


Q ss_pred             cccccccccc---ccchHHHHHHhHhhccCCC
Q 038162           99 ETGTTFSTSK---CTDIKGPIELCEASQLALE  127 (127)
Q Consensus        99 ~~G~~F~~~l---~~DvkglL~LYeAS~L~~~  127 (127)
                      ++| +|+.++   .+||+|||+|||||||+++
T Consensus       348 ~~g-~F~~~~~e~~~dv~g~L~LYeAS~l~~~  378 (785)
T 3s9v_A          348 ENG-EFFCFLGQTQRGVTDMLNVNRCSHVSFP  378 (785)
T ss_dssp             TTS-CBCSSTTCCCCCHHHHHHHHHHHTSCCT
T ss_pred             cCC-CeeeccccccccccccHHHHhHhhcCCC
Confidence            999 999866   6999999999999999985

>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A*

Probab=100.00  E-value=8.4e-35  Score=259.95  Aligned_cols=121  Identities=36%  Similarity=0.562  Sum_probs=101.7

Q ss_pred             HHHHHHHHHHHHHHHHhh-----hcHhhhHHHHHHHHHhCcchhhHHHHHHHHHHHHHhhccc-CCC--C-CCCChHHHH
Q 038162            5 RSRAEKLKNDVKQMFLEA-----ADLLAKLELIDRICKLGLSYLFEEKIREVLVDTVAFLKND-TGC--L-QVKDLYATA   75 (127)
Q Consensus         5 ~~~~~~LkeeVk~~l~~~-----~~~~~~L~lID~lqRLGi~yhFe~EI~~~L~~i~~~~~~~-~~~--~-~~~dL~~~A   75 (127)
                      .+..+-|+..|++.....     .+++++|++||+||||||+|||++||+++|+.+|++|... ...  . ...||++||
T Consensus       220 ~~~l~YL~~~v~k~~g~VP~~yP~d~~e~L~lID~LqRLGIs~hFe~EI~~~L~~i~~~~~~~g~~~~~~~~~~DL~~tA  299 (727)
T 3pya_A          220 SNCLEYLRNAVKRFNGGVPNVFPVDLFEHIWIVDRLQRLGISRYFEEEIKECLDYVHRYWTDNGICWARCSHVQDIDDTA  299 (727)
T ss_dssp             HHHHHHHHHHHHHTTTCCCSSCCCHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHHTCCTTCCCSSSSCSCCCHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHhhhcCcccccCCCCCCHHHHH
Confidence            345667888888875432     5899999999999999999999999999999999876431 010  1 125999999


Q ss_pred             HHHHHHHhcCcceehhhhhccccccccccccc---cccchHHHHHHhHhhccCCC
Q 038162           76 LCFKLLRQHGYEISQDVFLDFMDETGTTFSTS---KCTDIKGPIELCEASQLALE  127 (127)
Q Consensus        76 L~FRLLRqhGy~VS~DvF~~F~d~~G~~F~~~---l~~DvkglL~LYeAS~L~~~  127 (127)
                      |+|||||||||+||||||++|+ ++| +|+..   ..+|++|||+|||||||+++
T Consensus       300 L~FRLLRqhGy~VS~DvF~~Fk-~~G-~F~~~~~e~~~Dv~glLsLYeAS~l~~~  352 (727)
T 3pya_A          300 MAFRLLRQHGYQVSADVFKNFE-KEG-EFFCFVGQSNQAVTGMFNLYRASQLAFP  352 (727)
T ss_dssp             HHHHHHHHTTCCCCGGGGGGGE-ETT-EECSSTTCCCCCHHHHHHHHHHHTTCCT
T ss_pred             HHHHHHHhCCCCCCHHHHHhcc-CCC-cccccccccccccHHHHHHHHHHHcCCC
Confidence            9999999999999999999999 888 99843   46899999999999999985

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	127
d1n1ba1	207	a.102.4.1 (A:64-270) (+)-bornyl diphosphate syntha	3e-34
d5easa1	197	a.102.4.1 (A:24-220) 5-Epi-aristolochene synthase	1e-29

>d1n1ba1 a.102.4.1 (A:64-270) (+)-bornyl diphosphate synthase {Garden sage (Salvia officinalis) [TaxId: 38868]} Length = 207

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Terpenoid cyclase N-terminal domain
domain: (+)-bornyl diphosphate synthase
species: Garden sage (Salvia officinalis) [TaxId: 38868]

 Score =  116 bits (291), Expect = 3e-34
 Identities = 50/129 (38%), Positives = 72/129 (55%), Gaps = 3/129 (2%)

Query: 1   EEGYRSRAEKLKNDVKQMFLEAADLLAKLELIDRICKLGLSYLFEEKIREVLVDTV--AF 58
           EE +  R  +L   V+ +  E  + + +LELI  +  LGLS  F+++I+E+L   +    
Sbjct: 16  EERHLDRKAELIVQVRILLKEKMEPVQQLELIHDLKYLGLSDFFQDEIKEIL-GVIYNEH 74

Query: 59  LKNDTGCLQVKDLYATALCFKLLRQHGYEISQDVFLDFMDETGTTFSTSKCTDIKGPIEL 118
                  ++  DLY TAL F+LLRQHG+ ISQDVF  F +E G  F  S   D KG ++L
Sbjct: 75  KCFHNNEVEKMDLYFTALGFRLLRQHGFNISQDVFNCFKNEKGIDFKASLAQDTKGMLQL 134

Query: 119 CEASQLALE 127
            EAS L  +
Sbjct: 135 YEASFLLRK 143

>d5easa1 a.102.4.1 (A:24-220) 5-Epi-aristolochene synthase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 197

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Terpenoid cyclase N-terminal domain
domain: 5-Epi-aristolochene synthase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

 Score =  103 bits (259), Expect = 1e-29
 Identities = 49/128 (38%), Positives = 64/128 (50%), Gaps = 8/128 (6%)

Query: 1   EEGYRSRAEKLKNDVKQMFLEAA-DLLAKLELIDRICKLGLSYLFEEKIREVLVDTVAFL 59
            E Y    E LK   + M L     L   L LID I +LG+SY FE++I E+L       
Sbjct: 16  AEKYAQEIEALKEQTRSMLLATGRKLADTLNLIDIIERLGISYHFEKEIDEILDQIYNQN 75

Query: 60  KNDTGCLQVKDLYATALCFKLLRQHGYEISQDVFLDFMDETGTTFSTSKCTDIKGPIELC 119
            N        DL  +AL F+LLRQHG+ IS ++F  F DE G  F  S  +D+ G + L 
Sbjct: 76  SNC------NDLCTSALQFRLLRQHGFNISPEIFSKFQDENG-KFKESLASDVLGLLNLY 128

Query: 120 EASQLALE 127
           EAS +   
Sbjct: 129 EASHVRTH 136

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	127
d1n1ba1	207	(+)-bornyl diphosphate synthase {Garden sage (Salv	100.0
d5easa1	197	5-Epi-aristolochene synthase {Tobacco (Nicotiana t	100.0

>d1n1ba1 a.102.4.1 (A:64-270) (+)-bornyl diphosphate synthase {Garden sage (Salvia officinalis) [TaxId: 38868]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Terpenoid cyclase N-terminal domain
domain: (+)-bornyl diphosphate synthase
species: Garden sage (Salvia officinalis) [TaxId: 38868]

Probab=100.00  E-value=1.1e-51  Score=321.60  Aligned_cols=126  Identities=40%  Similarity=0.547  Sum_probs=113.0

Q ss_pred             ChhHHHHHHHHHHHHHHHHHhhhcHhhhHHHHHHHHHhCcchhhHHHHHHHHHHHHHhhc--ccCCCCCCCChHHHHHHH
Q 038162            1 EEGYRSRAEKLKNDVKQMFLEAADLLAKLELIDRICKLGLSYLFEEKIREVLVDTVAFLK--NDTGCLQVKDLYATALCF   78 (127)
Q Consensus         1 ~~~~~~~~~~LkeeVk~~l~~~~~~~~~L~lID~lqRLGi~yhFe~EI~~~L~~i~~~~~--~~~~~~~~~dL~~~AL~F   78 (127)
                      ++.+.+|+++||++||+||.++.+++++|+|||+||||||+|||++||+++|++||+...  .. ......|||+|||+|
T Consensus        16 ~e~~~~r~e~Lkeevr~ml~~~~d~~~~L~lID~lqRLGisyhFe~EI~~~L~~i~~~~~~~~~-~~~~~~DL~~~AL~F   94 (207)
T d1n1ba1          16 EERHLDRKAELIVQVRILLKEKMEPVQQLELIHDLKYLGLSDFFQDEIKEILGVIYNEHKCFHN-NEVEKMDLYFTALGF   94 (207)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHHHCHHHHH-CCCCSCCHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhchhccc-cccccccHHHHHHHH
Confidence            367889999999999999998889999999999999999999999999999999996311  10 111226999999999


Q ss_pred             HHHHhcCcceehhhhhccccccccccccccccchHHHHHHhHhhccCCC
Q 038162           79 KLLRQHGYEISQDVFLDFMDETGTTFSTSKCTDIKGPIELCEASQLALE  127 (127)
Q Consensus        79 RLLRqhGy~VS~DvF~~F~d~~G~~F~~~l~~DvkglL~LYeAS~L~~~  127 (127)
                      ||||||||+||||||++|+|++|.+|++++.+||+|||||||||||+++
T Consensus        95 RLLRqhGy~VS~dvF~~F~d~~g~~fk~~l~~Dv~glLsLYeAS~l~~~  143 (207)
T d1n1ba1          95 RLLRQHGFNISQDVFNCFKNEKGIDFKASLAQDTKGMLQLYEASFLLRK  143 (207)
T ss_dssp             HHHHHTTCCCCGGGGGGGBCTTSSSBCGGGGGCHHHHHHHHHHHTTCCT
T ss_pred             HHHHHcCCCCCHHHHHHhccCCCCchhhhHHHhHHHHHHHHHHHccCCC
Confidence            9999999999999999999999878999999999999999999999986

>d5easa1 a.102.4.1 (A:24-220) 5-Epi-aristolochene synthase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Terpenoid cyclase N-terminal domain
domain: 5-Epi-aristolochene synthase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=100.00  E-value=3.4e-51  Score=316.69  Aligned_cols=119  Identities=41%  Similarity=0.655  Sum_probs=110.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHhh-hcHhhhHHHHHHHHHhCcchhhHHHHHHHHHHHHHhhcccCCCCCCCChHHHHHHHHH
Q 038162            2 EGYRSRAEKLKNDVKQMFLEA-ADLLAKLELIDRICKLGLSYLFEEKIREVLVDTVAFLKNDTGCLQVKDLYATALCFKL   80 (127)
Q Consensus         2 ~~~~~~~~~LkeeVk~~l~~~-~~~~~~L~lID~lqRLGi~yhFe~EI~~~L~~i~~~~~~~~~~~~~~dL~~~AL~FRL   80 (127)
                      +.+.+++++||++||.||.++ .++.++|+|||+||||||+|||++||+++|+.||+.|..      ..|||+|||+|||
T Consensus        17 ~~~~~~~e~Lk~eVr~ml~~~~~~~~~~L~lID~LqRLGi~yhFe~EI~~~L~~i~~~~~~------~~dl~~~AL~FRL   90 (197)
T d5easa1          17 EKYAQEIEALKEQTRSMLLATGRKLADTLNLIDIIERLGISYHFEKEIDEILDQIYNQNSN------CNDLCTSALQFRL   90 (197)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHHHCCC------CCSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCC------CCcHHHHHHHHHH
Confidence            568899999999999999864 689999999999999999999999999999999954322      2699999999999


Q ss_pred             HHhcCcceehhhhhccccccccccccccccchHHHHHHhHhhccCCC
Q 038162           81 LRQHGYEISQDVFLDFMDETGTTFSTSKCTDIKGPIELCEASQLALE  127 (127)
Q Consensus        81 LRqhGy~VS~DvF~~F~d~~G~~F~~~l~~DvkglL~LYeAS~L~~~  127 (127)
                      ||||||+||||||++|+|++| +|+.++.+||+|||+|||||||+++
T Consensus        91 LRqhGy~Vs~dvF~~Fkd~~G-~f~~~l~~D~~glLsLYeAS~l~~~  136 (197)
T d5easa1          91 LRQHGFNISPEIFSKFQDENG-KFKESLASDVLGLLNLYEASHVRTH  136 (197)
T ss_dssp             HHHTTCCCCGGGGGGGBCTTS-SBCGGGGGCHHHHHHHHHHHTTCCT
T ss_pred             HHHcCcccCHHHHhhhccCCC-CcccchhHhHHHHHHHHHHhccCCC
Confidence            999999999999999999999 9999999999999999999999985