Citrus Sinensis ID: 038163

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------
Protein Sequence
MSFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDDSPLHISLLQSIASIFPLLKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSLSYYTLGINSSETLNQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILD
Secondary Structure (PSIPRED)
ccccccccccccccccccccccEEEccccccccccccHHHHcccccccEEEccccccccccccccccccccccccEEEccccccccccHHHHHHHcccccEEEccccccccccccccccccccccEEEccccccccccccccccHHccccccccccccccccccccccccHHHHccccccEEEccccccEEcccHHccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccHHHccEEEcccccccccccccHHHcccccccEEEcccccccccccccHHHHcccccccEEEccccccccccHHHHHHHcHHHHEEEccccccccccccccccccccccEEEccccccccccccHcccccccccccEEEEccccccccccccccHHHcccccccEEEcccccccccccHHHHccccccccc
Coil and Loop (DISEMBL)
msfneinnlvvpqgynglrklksldlsgvgvrdgsKLLQSIGSFSSLNSLYLSSNNFTETVTITTQElhnftnmeylklddsplhISLLQSIASIFPLLknlsmigcevngvirgqdfphskslehLDMEFMRIALNTSFLQIISESMSSLKYLSLSYYTLGINSSETLNQGLCSLVHLQELYIAsndlrgslpwcmanmtslrild
Flexible Loop (DISEMBL)
MSFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDDSPLHISLLQSIASIFPLLKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSLSYYTLGINSSETLNQGLCSLVHLQELYIASndlrgslpwCMANMTSLRILD
Low Complexity Region (SEG)
MSFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGsfsslnslylssnnfTETVTITTQELHNFTNMEYLKLDDSPLHISLLQSIASIFPLLKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFLQIIsesmsslkylslsyyTLGINSSETLNQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILD
Disordered region (IsUnstruct)
*****INNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDDSPLHISLLQSIASIFPLLKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSLSYYTLGINSSETLNQGLCSLVHLQELYIASNDLRGSLPWCMANMTSL****
Disordered Region (DISOPRED)
MSFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDDSPLHISLLQSIASIFPLLKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSLSYYTLGINSSETLNQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILD
Disordered Region (DISEMBL)
MSFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDDSPLHISLLQSIASIFPLLKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSLSYYTLGINSSETLNQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILD
Disordered Region (DISPRO)
*SFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDDSPLHISLLQSIASIFPLLKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSLSYYTLGINSSETLNQGLCSLVHLQELYIASNDLRGSLPWCMANMTSL**L*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDDSPLHISLLQSIASIFPLLKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSLSYYTLGINSSETLNQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	207	2.2.26 [Sep-21-2011]
D4A615	1367	Tonsoku-like protein OS=R	yes	no	0.739	0.111	0.298	4e-05
C0LGJ1	1106	Probable LRR receptor-lik	no	no	0.724	0.135	0.315	0.0002
Q86WI3	1866	Protein NLRC5 OS=Homo sap	yes	no	0.980	0.108	0.269	0.0006

>sp|D4A615|TONSL_RAT Tonsoku-like protein OS=Rattus norvegicus GN=Tonsl PE=3 SV=1

 Score = 48.1 bits (113), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 55/184 (29%), Positives = 86/184 (46%), Gaps = 31/184 (16%)

Query: 21   LKSLDLSGVGVRD--GSKLLQSIGSFSSLNSLYLSSNNF----TETVTITTQELHNFTNM 74
            L+ L LSG  + D   ++LL ++G+  +L  L LSSN+        +   +     F N+
Sbjct: 1065 LRELRLSGNRLGDPCATELLATLGTMPNLVLLDLSSNHLGPEGLRQLVEGSLGQTAFQNV 1124

Query: 75   EYLKLDDSPLHISLLQSIASIF---PLLKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEF 131
            E L L  +PL     Q++AS+    P+L+ L +  C          F  S  L H     
Sbjct: 1125 EELDLSMNPLGDGCAQALASLLRTCPVLRTLRLQAC---------GFSPSFFLSH----- 1170

Query: 132  MRIALNTSFLQIISESMSSLKYLSLSYYTLGINSSETLNQGL--CSLVHLQELYIASNDL 189
             + AL ++F     +    LK LSLSY TLG  +   + Q L  C+L+HL+   +A++  
Sbjct: 1171 -QAALGSAF-----KDAEHLKTLSLSYNTLGAPALARVLQSLPTCTLLHLELSSVAASKS 1224

Query: 190  RGSL 193
              SL
Sbjct: 1225 NSSL 1228

Component of the MMS22L-TONSL complex, a complex that stimulates the recombination-dependent repair of stalled or collapsed replication forks. The MMS22L-TONSL complex is required to maintain genome integrity during DNA replication by promoting homologous recombination-mediated repair of replication fork-associated double-strand breaks. It may act by mediating the assembly of RAD51 filaments on ssDNA. Within the complex, may act as a scaffold.
Rattus norvegicus (taxid: 10116)

>sp|C0LGJ1|Y1743_ARATH Probable LRR receptor-like serine/threonine-protein kinase At1g74360 OS=Arabidopsis thaliana GN=At1g74360 PE=1 SV=1

 Score = 45.8 bits (107), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 52/165 (31%), Positives = 75/165 (45%), Gaps = 15/165 (9%)

Query: 41  IGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDDSPLHISLLQSIASIFPLLK 100
           IGS SSL  LYL +N F+  +  T   L N TN+ +L L  +      +Q I   F  +K
Sbjct: 296 IGSISSLKGLYLGNNTFSRDIPET---LLNLTNLVFLDLSRNKFGGD-IQEIFGRFTQVK 351

Query: 101 NLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIA--LNTSFLQIISESMSSLKYLSLSY 158
            L +      G I   +     +L  LD+ +   +  L T   QI      SLK+L L+Y
Sbjct: 352 YLVLHANSYVGGINSSNILKLPNLSRLDLGYNNFSGQLPTEISQI-----QSLKFLILAY 406

Query: 159 YTLGINSSETLNQGLCSLVHLQELYIASNDLRGSLPWCMANMTSL 203
                N S  + Q   ++  LQ L ++ N L GS+P     +TSL
Sbjct: 407 N----NFSGDIPQEYGNMPGLQALDLSFNKLTGSIPASFGKLTSL 447

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q86WI3|NLRC5_HUMAN Protein NLRC5 OS=Homo sapiens GN=NLRC5 PE=1 SV=3

 Score = 44.3 bits (103), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 58/215 (26%), Positives = 94/215 (43%), Gaps = 12/215 (5%)

Query: 3    FNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSK--LLQSIGSFSSLNSLYLSSNNFTET 60
            F+E     + +   G   LK LDLS + +   +   L   +   + L SL L+ N+  + 
Sbjct: 1534 FDEEGTKALMRALEGKWMLKRLDLSHLLLNSSTLALLTHRLSQMTCLQSLRLNRNSIGDV 1593

Query: 61   VTITTQE-LHNFTNMEYLKLDDSPLHISLLQSIASIFPLLKNLSMIGCEVN------GVI 113
                  E L   T++E L L  + +  + +Q +A+I P L  L  I    N      GV 
Sbjct: 1594 GCCHLSEALRAATSLEELDLSHNQIGDAGVQHLATILPGLPELRKIDLSGNSISSAGGVQ 1653

Query: 114  RGQDFPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSLSYYTLGINSSETLNQGL 173
              +     + LE L +    +   T+ L +  E    L+ L L +  LG   + +L Q L
Sbjct: 1654 LAESLVLCRRLEELMLGCNALGDPTA-LGLAQELPQHLRVLHLPFSHLGPGGALSLAQAL 1712

Query: 174  CSLVHLQELYIASNDLRGS-LPWCMANMTSLRILD 207
                HL+E+ +A N+L G  L +CM  +  LR +D
Sbjct: 1713 DGSPHLEEISLAENNLAGGVLRFCM-ELPLLRQID 1746

Probable regulator of the NF-kappa-B and type I interferon signaling pathways. May also regulate the type II interferon signaling pathway. Plays a role in homeostatic control of innate immunity and in antiviral defense mechanisms.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	207
224142721	926	predicted protein [Populus trichocarpa]	0.927	0.207	0.404	2e-18
224112233	976	leucine rich repeat family protein with	0.855	0.181	0.415	2e-18
224144186	973	predicted protein [Populus trichocarpa]	0.932	0.198	0.342	1e-16
224124000	920	predicted protein [Populus trichocarpa]	0.864	0.194	0.378	6e-16
224106950	863	predicted protein [Populus trichocarpa]	0.937	0.224	0.367	8e-15
296082109	682	unnamed protein product [Vitis vinifera]	0.821	0.249	0.372	3e-14
359476165	1464	PREDICTED: LRR receptor-like serine/thre	0.821	0.116	0.372	4e-14
224134597	947	predicted protein [Populus trichocarpa]	0.932	0.203	0.344	2e-13
255585991	743	serine-threonine protein kinase, plant-t	0.826	0.230	0.333	7e-13
296082108	975	unnamed protein product [Vitis vinifera]	0.792	0.168	0.377	1e-12

>gi|224142721|ref|XP_002324703.1| predicted protein [Populus trichocarpa] gi|222866137|gb|EEF03268.1| predicted protein [Populus trichocarpa]

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 83/205 (40%), Positives = 116/205 (56%), Gaps = 13/205 (6%)

Query: 4   NEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTI 63
           N I+NLV  +    L  L+SL L    + + S  LQS+G+  SL +L L   N      +
Sbjct: 185 NNISNLVASRELQNLSSLESLYLDDCSLDEHS--LQSLGALHSLKNLSLRELN----GAV 238

Query: 64  TTQELHNFTNMEYLKLDDSPLHISLLQSIASIFPLLKNLSMIGCEVNGVI-RGQDFPHSK 122
            +    +  N+EYL L    L+ S+ Q+I ++  L K L+++GC +NG I   Q F + K
Sbjct: 239 PSGAFLDLKNLEYLDLSYITLNNSIFQAIRTMTSL-KTLNLMGCSLNGQIPTTQGFLNLK 297

Query: 123 SLEHLDMEFMRIALNTSFLQIISESMSSLKYLSLSYYTLGINSSETLNQGLCSLVHLQEL 182
           +LE+LD+      L+ + LQ I  +M+SLK LSLS   L I    T  QGLC L HLQ L
Sbjct: 298 NLEYLDLS--DNTLDNNILQTIG-TMTSLKTLSLSSCKLNIQIPTT--QGLCDLNHLQVL 352

Query: 183 YIASNDLRGSLPWCMANMTSLRILD 207
           Y+  NDL G LP C+AN+TSL+ LD
Sbjct: 353 YMYDNDLSGFLPPCLANLTSLQRLD 377

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224112233|ref|XP_002332812.1| leucine rich repeat family protein with ABC domain [Populus trichocarpa] gi|222833206|gb|EEE71683.1| leucine rich repeat family protein with ABC domain [Populus trichocarpa]

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 79/190 (41%), Positives = 109/190 (57%), Gaps = 13/190 (6%)

Query: 18  LRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYL 77
           L  LK L L G  + + S  LQS+G+ SSL +L L   N     T+ + +  +  N+EYL
Sbjct: 243 LSSLKMLYLDGCSLDEHS--LQSLGALSSLKNLSLQELN----GTVPSGDFLDLKNLEYL 296

Query: 78  KLDDSPLHISLLQSIASIFPLLKNLSMIGCEVNGVI-RGQDFPHSKSLEHLDMEFMRIAL 136
            L ++ L+ S+ Q+I ++  L K L + GC +NG I   QDF   K+LE+LD+     AL
Sbjct: 297 DLSNTALNNSIFQAIGTMTSL-KTLILEGCSLNGQIPTTQDFLDLKNLEYLDLS--NTAL 353

Query: 137 NTSFLQIISESMSSLKYLSLSYYTLGINSSETLNQGLCSLVHLQELYIASNDLRGSLPWC 196
           N S  Q I  +M+SLK L L   +L  N      QGLC L HLQEL ++ NDL G LP C
Sbjct: 354 NNSIFQAIG-TMTSLKTLILEGCSL--NGQIPTTQGLCDLNHLQELDVSDNDLSGVLPSC 410

Query: 197 MANMTSLRIL 206
           + N+TSL+ L
Sbjct: 411 LPNLTSLQQL 420

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224144186|ref|XP_002336117.1| predicted protein [Populus trichocarpa] gi|222873047|gb|EEF10178.1| predicted protein [Populus trichocarpa]

 Score = 92.4 bits (228), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 86/251 (34%), Positives = 121/251 (48%), Gaps = 58/251 (23%)

Query: 4   NEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTI 63
           N I+ LV  +G + LR L   +++  G     +LLQ +G+F +L +LYL SN+F     I
Sbjct: 185 NNISKLVASRGPSNLRTLSLYNITTYG--SSFQLLQLLGAFQNLTTLYLGSNDFRGR--I 240

Query: 64  TTQELHNFTNMEYLKLDDSPLHISLLQSIASIFPLLKNLSMIGCEVNGVIRGQDFPHSKS 123
               L N + ++ L LD   L    LQS+ ++ P LKNLS+   E+NG +    F + K+
Sbjct: 241 LGDALQNLSFLKELYLDGCSLDEHSLQSLGAL-PSLKNLSL--QELNGTVPYGGFLYLKN 297

Query: 124 LEHLDMEFMRIALNTSFLQIISESMSSLKYLSL--------------------------- 156
           L++LD+ +    LN S  Q I E+M+SLK L L                           
Sbjct: 298 LKYLDLSYN--TLNNSIFQAI-ETMTSLKTLKLKGCGLNGQISSTQGFLNLKNLEYLDLS 354

Query: 157 ----------------SYYTLGINSSE-----TLNQGLCSLVHLQELYIASNDLRGSLPW 195
                           S  TLG+ S          QGLC L HLQELY++ NDL G LP 
Sbjct: 355 DNTLDNNILQSIRAMTSLKTLGLQSCRLNGRIPTTQGLCDLNHLQELYMSDNDLSGFLPL 414

Query: 196 CMANMTSLRIL 206
           C+AN+TSL+ L
Sbjct: 415 CLANLTSLQQL 425

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224124000|ref|XP_002330262.1| predicted protein [Populus trichocarpa] gi|222871718|gb|EEF08849.1| predicted protein [Populus trichocarpa]

 Score = 89.7 bits (221), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 73/193 (37%), Positives = 117/193 (60%), Gaps = 14/193 (7%)

Query: 17  GLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEY 76
           GLR L+ LDL+   + D   +L S+G FS+L SLYLS+N FT +  +    L N +++E 
Sbjct: 82  GLRNLEELDLTHNKLND--IILSSLGGFSTLKSLYLSNNRFTGSTGLNG--LSNSSSLEE 137

Query: 77  LKLDDSPLHISLLQSIASIFPLLKNLSMIGCEVNGVIRGQD-FPHSKSLEHLDMEFMRIA 135
           + LDDS L  S L++I  +   LK LS+ G + +  +  +  F +S +LE L ++  R +
Sbjct: 138 VFLDDSFLPASFLRNIGPL-STLKVLSLTGVDFSSTLPAEGTFFNSSTLEELHLD--RTS 194

Query: 136 LNTSFLQIISESMSSLKYLSLSYYTLGINSSETLN-QGLCSLVHLQELYIASNDLRGSLP 194
           L  +FLQ I  ++ +LK LS+    L    ++TL  QG C L +L++L ++ N+  GSLP
Sbjct: 195 LPLNFLQNIG-TLPTLKVLSVGQCDL----NDTLPAQGWCELKNLEQLDLSGNNFGGSLP 249

Query: 195 WCMANMTSLRILD 207
            C+ N++SL++LD
Sbjct: 250 DCLGNLSSLQLLD 262

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224106950|ref|XP_002333589.1| predicted protein [Populus trichocarpa] gi|222837497|gb|EEE75876.1| predicted protein [Populus trichocarpa]

 Score = 86.3 bits (212), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 76/207 (36%), Positives = 113/207 (54%), Gaps = 13/207 (6%)

Query: 1   MSFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTET 60
           M +N+    ++      L  L+SL L G  + + S  LQS+G+ SSL ++ L + N    
Sbjct: 150 MGYNDFIGRILSDELQNLSSLQSLYLDGCSLDEYS--LQSLGALSSLKNMSLQALN---- 203

Query: 61  VTITTQELHNFTNMEYLKLDDSPLHISLLQSIASIFPLLKNLSMIGCEVNGVI-RGQDFP 119
             + ++   +  N+EYL L  + L+ S+ Q+I ++  L + L +  C ++G I   Q F 
Sbjct: 204 GIVLSRGFLDLKNLEYLDLSYNTLNNSIFQAIGTMTSL-RTLILHSCRLDGRIPTTQGFF 262

Query: 120 HSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSLSYYTLGINSSETLNQGLCSLVHL 179
           + K+LE LD+      L+ + LQ I  +M SLK L L   +L  N      QGLC L HL
Sbjct: 263 NLKNLEFLDLS--SNTLSNNILQTI-RTMPSLKTLWLQNCSL--NGQLPTTQGLCDLNHL 317

Query: 180 QELYIASNDLRGSLPWCMANMTSLRIL 206
           QELY+  NDL G LP C+ANMTSL+ L
Sbjct: 318 QELYMNDNDLSGFLPPCLANMTSLQRL 344

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296082109|emb|CBI21114.3| unnamed protein product [Vitis vinifera]

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 67/180 (37%), Positives = 104/180 (57%), Gaps = 10/180 (5%)

Query: 28  GVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDDSPLHIS 87
           G  + +GS  +Q + +  +L  L LS N+      ITT  L +   +  L L+ +  +IS
Sbjct: 159 GTNILEGS--IQELAALHNLEELDLSKNDLESF--ITTTGLKSLRKLRVLHLETNDFNIS 214

Query: 88  LLQSIASIFPLLKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFLQIISES 147
            L+S+  +  LLK L + G ++ G +  ++  + ++LE LD+    I+  +S LQI+ E 
Sbjct: 215 TLKSLGRL-SLLKELYLGGNKLEGSVTLRELNNLRNLEVLDLSSTNIS--SSILQIV-EV 270

Query: 148 MSSLKYLSLSYYTLGINSSETLNQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILD 207
           M+SLK LSL   + GIN S+T  QGLC L +LQEL ++ N   GS+  C+ N+TSLR LD
Sbjct: 271 MTSLKALSLR--SNGINGSQTALQGLCKLKNLQELDLSDNGFEGSVSPCLGNLTSLRALD 328

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359476165|ref|XP_002283141.2| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1-like [Vitis vinifera]

 Score = 84.0 bits (206), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 67/180 (37%), Positives = 104/180 (57%), Gaps = 10/180 (5%)

Query: 28  GVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDDSPLHIS 87
           G  + +GS  +Q + +  +L  L LS N+      ITT  L +   +  L L+ +  +IS
Sbjct: 603 GTNILEGS--IQELAALHNLEELDLSKNDLESF--ITTTGLKSLRKLRVLHLETNDFNIS 658

Query: 88  LLQSIASIFPLLKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFLQIISES 147
            L+S+  +  LLK L + G ++ G +  ++  + ++LE LD+    I+  +S LQI+ E 
Sbjct: 659 TLKSLGRL-SLLKELYLGGNKLEGSVTLRELNNLRNLEVLDLSSTNIS--SSILQIV-EV 714

Query: 148 MSSLKYLSLSYYTLGINSSETLNQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILD 207
           M+SLK LSL   + GIN S+T  QGLC L +LQEL ++ N   GS+  C+ N+TSLR LD
Sbjct: 715 MTSLKALSLR--SNGINGSQTALQGLCKLKNLQELDLSDNGFEGSVSPCLGNLTSLRALD 772

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224134597|ref|XP_002327443.1| predicted protein [Populus trichocarpa] gi|222835997|gb|EEE74418.1| predicted protein [Populus trichocarpa]

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 81/235 (34%), Positives = 122/235 (51%), Gaps = 42/235 (17%)

Query: 1   MSFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTET 60
           +S N I+ LV  +G + L  L   D++        +LLQS+G+F SL +LYL+ N+F   
Sbjct: 182 LSGNNIDKLVASRGPSNLTTLYLHDITTY--ESSFQLLQSLGAFPSLMTLYLNKNDFRGR 239

Query: 61  VTITTQELHNFTNMEYLKLDDSPLHISLLQSIASIFPLLKNLSMIGCEVNGVIRGQDFPH 120
             I   EL N ++++ L +D   L    LQS+ ++ P LKNL +    ++G +  + F  
Sbjct: 240 --ILGDELQNLSSLKSLYMDGCSLDEHSLQSLGAL-PSLKNLLLRA--LSGSVPSRGFLD 294

Query: 121 SKSLEHLD----------------MEFM------------RIALNTSFLQIISESMSSLK 152
            K+LE+LD                M F+            RI L   FL     ++ +L+
Sbjct: 295 LKNLEYLDLNLNTLNNSIFQAIRMMTFLKALNLHGCKLDGRIPLAQGFL-----NLKNLE 349

Query: 153 YLSLSYYTLGINSSETLNQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILD 207
           +L LS  TL  +  +T+  GLC L HLQ+LY+  NDL G LP C+AN+TSL+ LD
Sbjct: 350 HLDLSSNTLDNSIFQTI--GLCDLNHLQQLYMYDNDLSGFLPPCLANLTSLQQLD 402

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255585991|ref|XP_002533665.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] gi|223526433|gb|EEF28711.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis]

 Score = 79.7 bits (195), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 68/204 (33%), Positives = 105/204 (51%), Gaps = 33/204 (16%)

Query: 4   NEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGS-FSSLNSLYLSSNNFTETVT 62
           N I   +  +G+  L  L++L++  +G  + +  + S  S FSSL SLY++ N     + 
Sbjct: 102 NNIAGCIENEGFERLSTLENLEILNLGYNNFNNNILSFFSDFSSLKSLYMNDNKLKGILN 161

Query: 63  ITTQELHNFTNMEYLKLDDSPLHISLLQSIASIFPLLKNLSMIGCEVNGVIRGQDFPHSK 122
           +  +EL+  T++E LK                         M G ++ G      FP  +
Sbjct: 162 V--EELNYLTSLEELK-------------------------MAGNQIEGFQSLNGFPVFR 194

Query: 123 SLEHLDMEFMRIALNTSFLQIISESMSSLKYLSLSYYTLGINSSETLNQGLCSLVHLQEL 182
           +L+HL ++     LN SFLQ I  +++SLK LSLS    G+  +    QGLC L HL+ L
Sbjct: 195 NLQHLYLD--SSTLNNSFLQSIG-TLTSLKALSLS--KCGLTGTIPSTQGLCELKHLECL 249

Query: 183 YIASNDLRGSLPWCMANMTSLRIL 206
            I+ N L G+LPWC+AN+TSL+ L
Sbjct: 250 DISFNSLSGNLPWCLANLTSLQQL 273

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296082108|emb|CBI21113.3| unnamed protein product [Vitis vinifera]

 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 68/180 (37%), Positives = 105/180 (58%), Gaps = 16/180 (8%)

Query: 28  GVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDDSPLHIS 87
           G  + +GS  +Q + +  +L  L LS NN  E+  ITT+ L +   +  L L+ +  +IS
Sbjct: 159 GTNILEGS--IQELAALHNLEELDLS-NNLLESF-ITTKGLKSLRKLRVLHLETNGFNIS 214

Query: 88  LLQSIASIFPLLKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFLQIISES 147
            L+S+  +  LLK L + G ++      ++  + ++LE LD+    I+  +S LQI+ E 
Sbjct: 215 TLKSLGRL-SLLKELYLGGNKL------EELNNLRNLEVLDLSSTNIS--SSILQIV-EV 264

Query: 148 MSSLKYLSLSYYTLGINSSETLNQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILD 207
           M+SLK LSL   + GIN S+T  QGLC L +LQEL ++ N   GS+  C+ N+TSLR LD
Sbjct: 265 MTSLKALSLR--SNGINGSQTALQGLCKLRNLQELDLSDNGFEGSVSPCLGNLTSLRALD 322

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	207
TAIR|locus:2019662	965	RLP15 "AT1G74190" [Arabidopsis	0.193	0.041	0.425	9.6e-06

TAIR|locus:2019662 RLP15 "AT1G74190" [Arabidopsis thaliana (taxid:3702)]

 Score = 98 (39.6 bits), Expect = 9.6e-06, Sum P(2) = 9.6e-06
 Identities = 17/40 (42%), Positives = 28/40 (70%)

Query:   168 TLNQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILD 207
             ++  G+C L ++QEL ++ N L G LP C+ ++T LR+LD
Sbjct:   235 SIQSGICELNNMQELDLSQNKLVGHLPSCLTSLTGLRVLD 274

GO:0007165 "signal transduction" evidence=IC

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pg.C_LG_XVIII1213 hypothetical protein (926 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	207
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.86
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.86
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.72
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.71
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.69
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.62
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.61
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.59
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.49
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.42
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.35
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.34
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.32
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.32
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.32
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.29
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.27
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.2
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.18
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.18
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.17
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.16
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.12
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.07
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.05
PLN03150	623	hypothetical protein; Provisional	98.99
PLN03150	623	hypothetical protein; Provisional	98.98
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.96
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.92
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.88
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.88
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.8
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.78
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.7
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.64
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.6
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.51
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.49
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.47
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.34
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.33
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.29
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.27
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.23
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.19
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.16
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.06
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.06
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.01
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.94
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.94
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.87
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.7
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.66
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.51
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.5
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.48
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.3
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.29
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.05
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.0
PRK15386	426	type III secretion protein GogB; Provisional	96.94
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	96.87
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.76
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.37
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.0
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.63
KOG1947	482	consensus Leucine rich repeat proteins, some prote	95.36
KOG1947	482	consensus Leucine rich repeat proteins, some prote	95.24
KOG3864	221	consensus Uncharacterized conserved protein [Funct	94.53
PRK15386	426	type III secretion protein GogB; Provisional	94.44
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	93.64
KOG3864	221	consensus Uncharacterized conserved protein [Funct	92.96
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	92.87
KOG4341	483	consensus F-box protein containing LRR [General fu	92.65
KOG4341	483	consensus F-box protein containing LRR [General fu	92.39
smart00370	26	LRR Leucine-rich repeats, outliers.	88.89
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	88.89
smart00368	28	LRR_RI Leucine rich repeat, ribonuclease inhibitor	88.68
KOG4308	478	consensus LRR-containing protein [Function unknown	86.38
KOG0473	326	consensus Leucine-rich repeat protein [Function un	83.41
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	82.49

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.86  E-value=1.4e-21  Score=176.87  Aligned_cols=153  Identities=26%  Similarity=0.337  Sum_probs=77.7

Q ss_pred             cchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcCCCCCChHHHHhhcccccc-----cCCcccceeccc
Q 038163           36 KLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDDSPLHISLLQSIASIFPL-----LKNLSMIGCEVN  110 (207)
Q Consensus        36 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L-----~~n~~~~~~~~~  110 (207)
                      .+|..++.+++|++|++++|.+.+..|   ..+.++++|++|++++|.+.+..+..++.+++|     .+|.+.+..|. 
T Consensus       155 ~~p~~~~~l~~L~~L~L~~n~l~~~~p---~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~-  230 (968)
T PLN00113        155 EIPNDIGSFSSLKVLDLGGNVLVGKIP---NSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPY-  230 (968)
T ss_pred             cCChHHhcCCCCCEEECccCcccccCC---hhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCCh-
Confidence            445555555556666665555555555   455555555555555555554444444444433     44444444444 


Q ss_pred             cccccCCCCCCCccceecccccccccCchhHHHHHhcCCCccEEEccCCccCcccccchhhhhcCCCCCceEEecCCcCC
Q 038163          111 GVIRGQDFPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSLSYYTLGINSSETLNQGLCSLVHLQELYIASNDLR  190 (207)
Q Consensus       111 ~~~~~~~~~~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L~l~~n~~~~~~~i~~~~~~~~~~~L~~L~l~~n~l~  190 (207)
                            .+..+++|++|+++  +|.+++..|..+. .+++|+.|++++|.+.  +.+ |. .+..+++|+.|++++|.+.
T Consensus       231 ------~l~~l~~L~~L~L~--~n~l~~~~p~~l~-~l~~L~~L~L~~n~l~--~~~-p~-~l~~l~~L~~L~Ls~n~l~  297 (968)
T PLN00113        231 ------EIGGLTSLNHLDLV--YNNLTGPIPSSLG-NLKNLQYLFLYQNKLS--GPI-PP-SIFSLQKLISLDLSDNSLS  297 (968)
T ss_pred             ------hHhcCCCCCEEECc--CceeccccChhHh-CCCCCCEEECcCCeee--ccC-ch-hHhhccCcCEEECcCCeec
Confidence                  44455555555555  5555444444444 4555555555555544  344 43 4444445555555555444


Q ss_pred             CCccccccCCCCCcc
Q 038163          191 GSLPWCMANMTSLRI  205 (207)
Q Consensus       191 ~~~p~~~~~l~~L~~  205 (207)
                      +.+|..+..+++|+.
T Consensus       298 ~~~p~~~~~l~~L~~  312 (968)
T PLN00113        298 GEIPELVIQLQNLEI  312 (968)
T ss_pred             cCCChhHcCCCCCcE
Confidence            444444444444443

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.86  E-value=1.8e-21  Score=176.13  Aligned_cols=185  Identities=23%  Similarity=0.269  Sum_probs=116.5

Q ss_pred             CCCCccCceecCccccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcC
Q 038163            1 MSFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLD   80 (207)
Q Consensus         1 l~~n~~~~~~p~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~   80 (207)
                      |++|.+.+.+|. .+..+++|++|++++|.+  ...+|..+.++++|++|++++|.+.+..|   ..+.++++|++|+++
T Consensus       147 Ls~n~~~~~~p~-~~~~l~~L~~L~L~~n~l--~~~~p~~~~~l~~L~~L~L~~n~l~~~~p---~~l~~l~~L~~L~L~  220 (968)
T PLN00113        147 LSNNMLSGEIPN-DIGSFSSLKVLDLGGNVL--VGKIPNSLTNLTSLEFLTLASNQLVGQIP---RELGQMKSLKWIYLG  220 (968)
T ss_pred             CcCCcccccCCh-HHhcCCCCCEEECccCcc--cccCChhhhhCcCCCeeeccCCCCcCcCC---hHHcCcCCccEEECc
Confidence            356666666664 367788888888888887  56777777888888888888887777777   677777777777777


Q ss_pred             CCCCChHHHHhhcccccc-----cCCcccceeccccccccCCCCCCCccceecccccccccCchhHHHHHhcCCCccEEE
Q 038163           81 DSPLHISLLQSIASIFPL-----LKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLS  155 (207)
Q Consensus        81 ~~~~~~~~~~~l~~l~~L-----~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L~  155 (207)
                      +|.+.+..+..+..+++|     .+|.+.+..|.       .+..+++|+.|+++  +|.+.+..|..+. .+++|+.|+
T Consensus       221 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~-------~l~~l~~L~~L~L~--~n~l~~~~p~~l~-~l~~L~~L~  290 (968)
T PLN00113        221 YNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPS-------SLGNLKNLQYLFLY--QNKLSGPIPPSIF-SLQKLISLD  290 (968)
T ss_pred             CCccCCcCChhHhcCCCCCEEECcCceeccccCh-------hHhCCCCCCEEECc--CCeeeccCchhHh-hccCcCEEE
Confidence            777766666655555554     56666665555       55555666666666  5555555555555 555555555


Q ss_pred             ccCCccCcccccchhhhhcCCCCCceEEecCCcCCCCccccccCCCCCcc
Q 038163          156 LSYYTLGINSSETLNQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRI  205 (207)
Q Consensus       156 l~~n~~~~~~~i~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~  205 (207)
                      +++|.+.  +.+ |. .+..+++|+.|++++|.+.+..|..+..+++|+.
T Consensus       291 Ls~n~l~--~~~-p~-~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~  336 (968)
T PLN00113        291 LSDNSLS--GEI-PE-LVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQV  336 (968)
T ss_pred             CcCCeec--cCC-Ch-hHcCCCCCcEEECCCCccCCcCChhHhcCCCCCE
Confidence            5555554  444 44 4444555555555555554444444444444443

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.72  E-value=1.5e-19  Score=128.52  Aligned_cols=155  Identities=26%  Similarity=0.332  Sum_probs=127.0

Q ss_pred             CCCCccCceecCccccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcC
Q 038163            1 MSFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLD   80 (207)
Q Consensus         1 l~~n~~~~~~p~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~   80 (207)
                      ||+|+++ .+||. ++.+.+|+.|++++|+|   ..+|..++.+++|+.|+++-|.+. ..|   ..++.++.|+.||+.
T Consensus        40 LSHNKl~-~vppn-ia~l~nlevln~~nnqi---e~lp~~issl~klr~lnvgmnrl~-~lp---rgfgs~p~levldlt  110 (264)
T KOG0617|consen   40 LSHNKLT-VVPPN-IAELKNLEVLNLSNNQI---EELPTSISSLPKLRILNVGMNRLN-ILP---RGFGSFPALEVLDLT  110 (264)
T ss_pred             cccCcee-ecCCc-HHHhhhhhhhhcccchh---hhcChhhhhchhhhheecchhhhh-cCc---cccCCCchhhhhhcc
Confidence            6889998 57777 59999999999999999   788999999999999999988877 467   788999999999999


Q ss_pred             CCCCChHHHHhhcccccccCCcccceeccccccccCCCCCCCccceecccccccccCchhHHHHHhcCCCccEEEccCCc
Q 038163           81 DSPLHISLLQSIASIFPLLKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSLSYYT  160 (207)
Q Consensus        81 ~~~~~~~~~~~l~~l~~L~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L~l~~n~  160 (207)
                      +|.+...                  .+|.       .|..+..|+.|-++  .|.|. .+|..++ .+++|+.|.+..|.
T Consensus       111 ynnl~e~------------------~lpg-------nff~m~tlralyl~--dndfe-~lp~dvg-~lt~lqil~lrdnd  161 (264)
T KOG0617|consen  111 YNNLNEN------------------SLPG-------NFFYMTTLRALYLG--DNDFE-ILPPDVG-KLTNLQILSLRDND  161 (264)
T ss_pred             ccccccc------------------cCCc-------chhHHHHHHHHHhc--CCCcc-cCChhhh-hhcceeEEeeccCc
Confidence            9987622                  3555       66677888888888  88886 6777777 88888888888888


Q ss_pred             cCcccccchhhhhcCCCCCceEEecCCcCCCCccccccC
Q 038163          161 LGINSSETLNQGLCSLVHLQELYIASNDLRGSLPWCMAN  199 (207)
Q Consensus       161 ~~~~~~i~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~  199 (207)
                      +.   ++ |. .++.++.|++|.+.+|+++ .+|.+++.
T Consensus       162 ll---~l-pk-eig~lt~lrelhiqgnrl~-vlppel~~  194 (264)
T KOG0617|consen  162 LL---SL-PK-EIGDLTRLRELHIQGNRLT-VLPPELAN  194 (264)
T ss_pred             hh---hC-cH-HHHHHHHHHHHhcccceee-ecChhhhh
Confidence            87   77 77 8888888888888888887 45555544

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.71  E-value=2.3e-18  Score=141.96  Aligned_cols=186  Identities=21%  Similarity=0.216  Sum_probs=122.9

Q ss_pred             CCCCccCceecCccccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcC
Q 038163            1 MSFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLD   80 (207)
Q Consensus         1 l~~n~~~~~~p~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~   80 (207)
                      ||.|.|+ .+|...|..-.++++|+|++|.|  +..--..|..+.+|.+|.|+.|+++...+   ..+.++++|+.|+|.
T Consensus       156 LSrN~is-~i~~~sfp~~~ni~~L~La~N~I--t~l~~~~F~~lnsL~tlkLsrNrittLp~---r~Fk~L~~L~~LdLn  229 (873)
T KOG4194|consen  156 LSRNLIS-EIPKPSFPAKVNIKKLNLASNRI--TTLETGHFDSLNSLLTLKLSRNRITTLPQ---RSFKRLPKLESLDLN  229 (873)
T ss_pred             hhhchhh-cccCCCCCCCCCceEEeeccccc--cccccccccccchheeeecccCcccccCH---HHhhhcchhhhhhcc
Confidence            4567776 57766677777888888888888  55556678888888888888888887555   677778899999999


Q ss_pred             CCCCChHHHHhhcccccc-----cCCcccceeccccccccCCCCCCCccceecccccccccCchhHHHHHhcCCCccEEE
Q 038163           81 DSPLHISLLQSIASIFPL-----LKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLS  155 (207)
Q Consensus        81 ~~~~~~~~~~~l~~l~~L-----~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L~  155 (207)
                      .|++...---.+..+++|     ..|.+...--.       .|..+.++++|+|+  .|.+...-..++. .+++|+.|+
T Consensus       230 rN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG-------~Fy~l~kme~l~L~--~N~l~~vn~g~lf-gLt~L~~L~  299 (873)
T KOG4194|consen  230 RNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDG-------AFYGLEKMEHLNLE--TNRLQAVNEGWLF-GLTSLEQLD  299 (873)
T ss_pred             ccceeeehhhhhcCchhhhhhhhhhcCcccccCc-------ceeeecccceeecc--cchhhhhhccccc-ccchhhhhc
Confidence            888763322233344433     66666543222       56666667777777  6666544445555 666677777


Q ss_pred             ccCCccCcccccchhhhhcCCCCCceEEecCCcCCCCccccccCCCCCccC
Q 038163          156 LSYYTLGINSSETLNQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRIL  206 (207)
Q Consensus       156 l~~n~~~~~~~i~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l  206 (207)
                      ++.|.+.   .|++. .+..+++|++|+++.|++++..+..|..+..|+.|
T Consensus       300 lS~NaI~---rih~d-~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~L  346 (873)
T KOG4194|consen  300 LSYNAIQ---RIHID-SWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEEL  346 (873)
T ss_pred             cchhhhh---eeecc-hhhhcccceeEeccccccccCChhHHHHHHHhhhh
Confidence            7777666   55233 56666667777777777665555555555555543

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.69  E-value=2e-18  Score=142.34  Aligned_cols=187  Identities=20%  Similarity=0.214  Sum_probs=113.2

Q ss_pred             CCCCccCceecCccccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcC
Q 038163            1 MSFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLD   80 (207)
Q Consensus         1 l~~n~~~~~~p~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~   80 (207)
                      |+.|.++ .+|+.+|.++++|+.|+|..|.|  ...-.-.|.+++.|+.|.+..|.++...-   ..+..+.++++|+|.
T Consensus       204 LsrNrit-tLp~r~Fk~L~~L~~LdLnrN~i--rive~ltFqgL~Sl~nlklqrN~I~kL~D---G~Fy~l~kme~l~L~  277 (873)
T KOG4194|consen  204 LSRNRIT-TLPQRSFKRLPKLESLDLNRNRI--RIVEGLTFQGLPSLQNLKLQRNDISKLDD---GAFYGLEKMEHLNLE  277 (873)
T ss_pred             cccCccc-ccCHHHhhhcchhhhhhccccce--eeehhhhhcCchhhhhhhhhhcCcccccC---cceeeecccceeecc
Confidence            3556666 46777777777777777777777  22223456666677777777776665444   456667778888888


Q ss_pred             CCCCChHHHHhhcccccc-----cCCcccceeccccccccCCCCCCCccceecccccccccCchhHHHHHhcCCCccEEE
Q 038163           81 DSPLHISLLQSIASIFPL-----LKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLS  155 (207)
Q Consensus        81 ~~~~~~~~~~~l~~l~~L-----~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L~  155 (207)
                      .|+++..-..++-++++|     ++|.+...-+.       .+..+++|+.|+|+  +|.++...+..+. .+..|+.|+
T Consensus       278 ~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d-------~WsftqkL~~LdLs--~N~i~~l~~~sf~-~L~~Le~Ln  347 (873)
T KOG4194|consen  278 TNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHID-------SWSFTQKLKELDLS--SNRITRLDEGSFR-VLSQLEELN  347 (873)
T ss_pred             cchhhhhhcccccccchhhhhccchhhhheeecc-------hhhhcccceeEecc--ccccccCChhHHH-HHHHhhhhc
Confidence            887764333344444444     77777665555       77788888888888  8887754444444 455555555


Q ss_pred             ccCCccCcccccchhhh---------------------------hcCCCCCceEEecCCcCCCCccccccCCCCCccCC
Q 038163          156 LSYYTLGINSSETLNQG---------------------------LCSLVHLQELYIASNDLRGSLPWCMANMTSLRILD  207 (207)
Q Consensus       156 l~~n~~~~~~~i~~~~~---------------------------~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~  207 (207)
                      +++|.+.   .+ ....                           +.++++|+.|++.+|++....-..|..+++|++||
T Consensus       348 Ls~Nsi~---~l-~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~Ld  422 (873)
T KOG4194|consen  348 LSHNSID---HL-AEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLD  422 (873)
T ss_pred             ccccchH---HH-HhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceec
Confidence            5555554   33 2223                           44455555555555555532225555556655554

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.62  E-value=2.6e-17  Score=137.15  Aligned_cols=180  Identities=21%  Similarity=0.228  Sum_probs=106.4

Q ss_pred             CCccCce-ecCccccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcCC
Q 038163            3 FNEINNL-VVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDD   81 (207)
Q Consensus         3 ~n~~~~~-~p~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~~   81 (207)
                      +|++..+ ||++ +..+..|++||||.|++   .++|..+....++..|+|++|+|..+..   +-+.++..|-+||||+
T Consensus        87 ~N~LKnsGiP~d-iF~l~dLt~lDLShNqL---~EvP~~LE~AKn~iVLNLS~N~IetIPn---~lfinLtDLLfLDLS~  159 (1255)
T KOG0444|consen   87 DNNLKNSGIPTD-IFRLKDLTILDLSHNQL---REVPTNLEYAKNSIVLNLSYNNIETIPN---SLFINLTDLLFLDLSN  159 (1255)
T ss_pred             ccccccCCCCch-hcccccceeeecchhhh---hhcchhhhhhcCcEEEEcccCccccCCc---hHHHhhHhHhhhcccc
Confidence            3444332 6666 47788888888888888   6778877777788888888887765422   2333444455555555


Q ss_pred             CCC-----------------------ChHHHHhhcccccc-----cC-CcccceeccccccccCCCCCCCccceeccccc
Q 038163           82 SPL-----------------------HISLLQSIASIFPL-----LK-NLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFM  132 (207)
Q Consensus        82 ~~~-----------------------~~~~~~~l~~l~~L-----~~-n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~  132 (207)
                      |++                       ..-....+..+++|     ++ +.-...+|.       .+..+.+|+.+|++  
T Consensus       160 NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Pt-------sld~l~NL~dvDlS--  230 (1255)
T KOG0444|consen  160 NRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPT-------SLDDLHNLRDVDLS--  230 (1255)
T ss_pred             chhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCC-------chhhhhhhhhcccc--
Confidence            543                       32222222233333     11 111123455       55566667777777  


Q ss_pred             ccccCchhHHHHHhcCCCccEEEccCCccCcccccchhhhhcCCCCCceEEecCCcCCCCccccccCCCCCccC
Q 038163          133 RIALNTSFLQIISESMSSLKYLSLSYYTLGINSSETLNQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRIL  206 (207)
Q Consensus       133 ~n~~~~~~~~~l~~~~~~L~~L~l~~n~~~~~~~i~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l  206 (207)
                      .|.+. .+|+.+. .+++|+.|++++|.++   ++ .. ....+.+|++|++++|+++ .+|+++.++++|+.|
T Consensus       231 ~N~Lp-~vPecly-~l~~LrrLNLS~N~it---eL-~~-~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kL  296 (1255)
T KOG0444|consen  231 ENNLP-IVPECLY-KLRNLRRLNLSGNKIT---EL-NM-TEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKL  296 (1255)
T ss_pred             ccCCC-cchHHHh-hhhhhheeccCcCcee---ee-ec-cHHHHhhhhhhccccchhc-cchHHHhhhHHHHHH
Confidence            76665 5566666 6677777777777766   54 33 4555666666666666665 456666666655544

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.61  E-value=1.2e-17  Score=139.17  Aligned_cols=182  Identities=22%  Similarity=0.297  Sum_probs=139.5

Q ss_pred             CCCCccCceecCccccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcC
Q 038163            1 MSFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLD   80 (207)
Q Consensus         1 l~~n~~~~~~p~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~   80 (207)
                      ||+|+|. .||...|.++..|-.||||+|++   ..+|+.+..+.+|++|+|++|.+....-   ..+..+++|++|.++
T Consensus       133 LS~N~Ie-tIPn~lfinLtDLLfLDLS~NrL---e~LPPQ~RRL~~LqtL~Ls~NPL~hfQL---rQLPsmtsL~vLhms  205 (1255)
T KOG0444|consen  133 LSYNNIE-TIPNSLFINLTDLLFLDLSNNRL---EMLPPQIRRLSMLQTLKLSNNPLNHFQL---RQLPSMTSLSVLHMS  205 (1255)
T ss_pred             cccCccc-cCCchHHHhhHhHhhhccccchh---hhcCHHHHHHhhhhhhhcCCChhhHHHH---hcCccchhhhhhhcc
Confidence            5788888 68999999999999999999999   7788888899999999999998775443   556677788888888


Q ss_pred             CCCCC-hHHHHhhcccccc-----cCCcccceeccccccccCCCCCCCccceecccccccccCchhHHHHHhcCCCccEE
Q 038163           81 DSPLH-ISLLQSIASIFPL-----LKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYL  154 (207)
Q Consensus        81 ~~~~~-~~~~~~l~~l~~L-----~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L  154 (207)
                      +.+.+ ...|.++..+.+|     +.|.+.. .|.       .+..+++|+.|+++  +|.++. +-.... .|.+|..|
T Consensus       206 ~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~-vPe-------cly~l~~LrrLNLS--~N~ite-L~~~~~-~W~~lEtL  273 (1255)
T KOG0444|consen  206 NTQRTLDNIPTSLDDLHNLRDVDLSENNLPI-VPE-------CLYKLRNLRRLNLS--GNKITE-LNMTEG-EWENLETL  273 (1255)
T ss_pred             cccchhhcCCCchhhhhhhhhccccccCCCc-chH-------HHhhhhhhheeccC--cCceee-eeccHH-HHhhhhhh
Confidence            87654 3455566666655     5566543 566       77888899999999  888873 333344 67788888


Q ss_pred             EccCCccCcccccchhhhhcCCCCCceEEecCCcCCC-CccccccCCCCCccC
Q 038163          155 SLSYYTLGINSSETLNQGLCSLVHLQELYIASNDLRG-SLPWCMANMTSLRIL  206 (207)
Q Consensus       155 ~l~~n~~~~~~~i~~~~~~~~~~~L~~L~l~~n~l~~-~~p~~~~~l~~L~~l  206 (207)
                      ++++|.++   .+ |. .+++++.|+.|.+.+|++.- -+|+.++++.+|+++
T Consensus       274 NlSrNQLt---~L-P~-avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf  321 (1255)
T KOG0444|consen  274 NLSRNQLT---VL-PD-AVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVF  321 (1255)
T ss_pred             ccccchhc---cc-hH-HHhhhHHHHHHHhccCcccccCCccchhhhhhhHHH
Confidence            88888887   77 77 88888888888888888773 367777777766653

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.59  E-value=6.5e-17  Score=127.89  Aligned_cols=193  Identities=19%  Similarity=0.214  Sum_probs=136.8

Q ss_pred             CCCCccCceecCccccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCC-CcCCcccccchhcccCCCCccEEEc
Q 038163            1 MSFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSS-NNFTETVTITTQELHNFTNMEYLKL   79 (207)
Q Consensus         1 l~~n~~~~~~p~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~-n~~~~~~~~~~~~l~~l~~L~~L~l   79 (207)
                      |+.|.|+ .||+.+|..+++|+.||||.|.|  ...-|..|.++..+..|-+.+ |.|++...   ..+..+..+|.|.+
T Consensus        74 LdqN~I~-~iP~~aF~~l~~LRrLdLS~N~I--s~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k---~~F~gL~slqrLll  147 (498)
T KOG4237|consen   74 LDQNQIS-SIPPGAFKTLHRLRRLDLSKNNI--SFIAPDAFKGLASLLSLVLYGNNKITDLPK---GAFGGLSSLQRLLL  147 (498)
T ss_pred             eccCCcc-cCChhhccchhhhceecccccch--hhcChHhhhhhHhhhHHHhhcCCchhhhhh---hHhhhHHHHHHHhc
Confidence            4668888 79999999999999999999999  566788899998887776655 88887544   45555566666666


Q ss_pred             CCCCCChHHHHhhcccccc-----cCCcccce----e--------------------------------c--ccc-----
Q 038163           80 DDSPLHISLLQSIASIFPL-----LKNLSMIG----C--------------------------------E--VNG-----  111 (207)
Q Consensus        80 ~~~~~~~~~~~~l~~l~~L-----~~n~~~~~----~--------------------------------~--~~~-----  111 (207)
                      ..|.+.......+..++++     .+|.+...    +                                |  ..+     
T Consensus       148 Nan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~  227 (498)
T KOG4237|consen  148 NANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVS  227 (498)
T ss_pred             ChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecc
Confidence            5555443222222222221     11111000    0                                0  000     


Q ss_pred             --------------------------------ccc----cCCCCCCCccceecccccccccCchhHHHHHhcCCCccEEE
Q 038163          112 --------------------------------VIR----GQDFPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLS  155 (207)
Q Consensus       112 --------------------------------~~~----~~~~~~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L~  155 (207)
                                                      +.+    -+.|.++++|++|+++  +|++++.-..++. ....+++|.
T Consensus       228 p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnls--nN~i~~i~~~aFe-~~a~l~eL~  304 (498)
T KOG4237|consen  228 PYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLS--NNKITRIEDGAFE-GAAELQELY  304 (498)
T ss_pred             hHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccC--CCccchhhhhhhc-chhhhhhhh
Confidence                                            000    0146789999999999  9999977777777 889999999


Q ss_pred             ccCCccCcccccchhhhhcCCCCCceEEecCCcCCCCccccccCCCCCccC
Q 038163          156 LSYYTLGINSSETLNQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRIL  206 (207)
Q Consensus       156 l~~n~~~~~~~i~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l  206 (207)
                      +..|.+.   .+ ....|.++..|++|++.+|+++...|..|..+.+|..|
T Consensus       305 L~~N~l~---~v-~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l  351 (498)
T KOG4237|consen  305 LTRNKLE---FV-SSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTL  351 (498)
T ss_pred             cCcchHH---HH-HHHhhhccccceeeeecCCeeEEEecccccccceeeee
Confidence            9999997   66 55589999999999999999998888889888877765

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.49  E-value=3.7e-16  Score=111.29  Aligned_cols=149  Identities=26%  Similarity=0.283  Sum_probs=126.9

Q ss_pred             ccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcCCCCCChHHHHhhcc
Q 038163           15 YNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDDSPLHISLLQSIAS   94 (207)
Q Consensus        15 ~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~   94 (207)
                      +..+.+++.|.+|.|++   ..+|..+..+.+|+.|++.+|.+... |   .+++.+++|+.|.++.|++.         
T Consensus        29 Lf~~s~ITrLtLSHNKl---~~vppnia~l~nlevln~~nnqie~l-p---~~issl~klr~lnvgmnrl~---------   92 (264)
T KOG0617|consen   29 LFNMSNITRLTLSHNKL---TVVPPNIAELKNLEVLNLSNNQIEEL-P---TSISSLPKLRILNVGMNRLN---------   92 (264)
T ss_pred             ccchhhhhhhhcccCce---eecCCcHHHhhhhhhhhcccchhhhc-C---hhhhhchhhhheecchhhhh---------
Confidence            45677888899999999   66888888999999999999998864 5   47888899999999888875         


Q ss_pred             cccccCCcccceeccccccccCCCCCCCccceecccccccccCc-hhHHHHHhcCCCccEEEccCCccCcccccchhhhh
Q 038163           95 IFPLLKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNT-SFLQIISESMSSLKYLSLSYYTLGINSSETLNQGL  173 (207)
Q Consensus        95 l~~L~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~-~~~~~l~~~~~~L~~L~l~~n~~~~~~~i~~~~~~  173 (207)
                                 .+|.       +|+.++.|+.||++  +|.+.+ .+|..+. .+..|+.|+++.|.+-   -+ |. .+
T Consensus        93 -----------~lpr-------gfgs~p~levldlt--ynnl~e~~lpgnff-~m~tlralyl~dndfe---~l-p~-dv  146 (264)
T KOG0617|consen   93 -----------ILPR-------GFGSFPALEVLDLT--YNNLNENSLPGNFF-YMTTLRALYLGDNDFE---IL-PP-DV  146 (264)
T ss_pred             -----------cCcc-------ccCCCchhhhhhcc--ccccccccCCcchh-HHHHHHHHHhcCCCcc---cC-Ch-hh
Confidence                       4677       89999999999999  998864 4577777 7889999999999996   77 77 89


Q ss_pred             cCCCCCceEEecCCcCCCCccccccCCCCCccC
Q 038163          174 CSLVHLQELYIASNDLRGSLPWCMANMTSLRIL  206 (207)
Q Consensus       174 ~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l  206 (207)
                      +.+++|+.|.+.+|.+. .+|.+++.+..|+.|
T Consensus       147 g~lt~lqil~lrdndll-~lpkeig~lt~lrel  178 (264)
T KOG0617|consen  147 GKLTNLQILSLRDNDLL-SLPKEIGDLTRLREL  178 (264)
T ss_pred             hhhcceeEEeeccCchh-hCcHHHHHHHHHHHH
Confidence            99999999999999998 578888888877765

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.42  E-value=6.9e-16  Score=122.55  Aligned_cols=176  Identities=23%  Similarity=0.363  Sum_probs=102.2

Q ss_pred             CCCccCceecCccccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcCC
Q 038163            2 SFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDD   81 (207)
Q Consensus         2 ~~n~~~~~~p~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~~   81 (207)
                      ++|+++ .+|++ +..+..+.+++++.|.+   ..+++.++.+..+..++...|+++.. |   ..++.+.++..+++.+
T Consensus        99 s~n~ls-~lp~~-i~s~~~l~~l~~s~n~~---~el~~~i~~~~~l~dl~~~~N~i~sl-p---~~~~~~~~l~~l~~~~  169 (565)
T KOG0472|consen   99 SHNKLS-ELPEQ-IGSLISLVKLDCSSNEL---KELPDSIGRLLDLEDLDATNNQISSL-P---EDMVNLSKLSKLDLEG  169 (565)
T ss_pred             ccchHh-hccHH-Hhhhhhhhhhhccccce---eecCchHHHHhhhhhhhccccccccC-c---hHHHHHHHHHHhhccc
Confidence            445555 45544 36666666666666666   55666666666666666666666543 2   2444444444444444


Q ss_pred             CCCCh----------------------HHHHhhcccccc-----cCCcccceeccccccccCCCCCCCccceeccccccc
Q 038163           82 SPLHI----------------------SLLQSIASIFPL-----LKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRI  134 (207)
Q Consensus        82 ~~~~~----------------------~~~~~l~~l~~L-----~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n  134 (207)
                      |.+..                      ..|+.++.+.+|     ..|++.. +|        .|..|..|..+.++  .|
T Consensus       170 n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~-lP--------ef~gcs~L~Elh~g--~N  238 (565)
T KOG0472|consen  170 NKLKALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIRF-LP--------EFPGCSLLKELHVG--EN  238 (565)
T ss_pred             cchhhCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHHhhhccccc-CC--------CCCccHHHHHHHhc--cc
Confidence            44331                      223333333333     3344332 22        45666666666666  66


Q ss_pred             ccCchhHHHHHhcCCCccEEEccCCccCcccccchhhhhcCCCCCceEEecCCcCCCCccccccCCCCCcc
Q 038163          135 ALNTSFLQIISESMSSLKYLSLSYYTLGINSSETLNQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRI  205 (207)
Q Consensus       135 ~~~~~~~~~l~~~~~~L~~L~l~~n~~~~~~~i~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~  205 (207)
                      .+. .+|+....+++++..|++..|.++   +. |. .+.-+.+|..||++.|.+++ +|..++++ .|+.
T Consensus       239 ~i~-~lpae~~~~L~~l~vLDLRdNklk---e~-Pd-e~clLrsL~rLDlSNN~is~-Lp~sLgnl-hL~~  301 (565)
T KOG0472|consen  239 QIE-MLPAEHLKHLNSLLVLDLRDNKLK---EV-PD-EICLLRSLERLDLSNNDISS-LPYSLGNL-HLKF  301 (565)
T ss_pred             HHH-hhHHHHhcccccceeeeccccccc---cC-ch-HHHHhhhhhhhcccCCcccc-CCcccccc-eeee
Confidence            665 344333327777888888888887   77 77 77777888888888888874 56666665 4443

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.35  E-value=1e-12  Score=104.97  Aligned_cols=71  Identities=24%  Similarity=0.178  Sum_probs=33.7

Q ss_pred             CCCCCccceecccccccccCchhHHHHHhc----CCCccEEEccCCccCccc--ccchhhhhcCCCCCceEEecCCcCCC
Q 038163          118 FPHSKSLEHLDMEFMRIALNTSFLQIISES----MSSLKYLSLSYYTLGINS--SETLNQGLCSLVHLQELYIASNDLRG  191 (207)
Q Consensus       118 ~~~~~~L~~L~l~~~~n~~~~~~~~~l~~~----~~~L~~L~l~~n~~~~~~--~i~~~~~~~~~~~L~~L~l~~n~l~~  191 (207)
                      +..+++|++|+++  +|.+++.....+.+.    .+.|++|++++|.++..+  .+ .. .+..+++|+.+++++|.+.+
T Consensus       217 ~~~~~~L~~L~ls--~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l-~~-~~~~~~~L~~l~l~~N~l~~  292 (319)
T cd00116         217 LASLKSLEVLNLG--DNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDL-AE-VLAEKESLLELDLRGNKFGE  292 (319)
T ss_pred             hcccCCCCEEecC--CCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHH-HH-HHhcCCCccEEECCCCCCcH
Confidence            3345556666666  555554333222211    145666666666554111  11 12 33344556666666666654


Q ss_pred             C
Q 038163          192 S  192 (207)
Q Consensus       192 ~  192 (207)
                      +
T Consensus       293 ~  293 (319)
T cd00116         293 E  293 (319)
T ss_pred             H
Confidence            3

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.34  E-value=3.9e-14  Score=122.36  Aligned_cols=180  Identities=24%  Similarity=0.255  Sum_probs=108.7

Q ss_pred             CCCCccCceecCccccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcC
Q 038163            1 MSFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLD   80 (207)
Q Consensus         1 l~~n~~~~~~p~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~   80 (207)
                      +++|.++ .+| .+++.+.+++.+....|.+   ..+|..+...+.|+.|....|.+....|    ...+++.|++|+|.
T Consensus       248 is~n~l~-~lp-~wi~~~~nle~l~~n~N~l---~~lp~ri~~~~~L~~l~~~~nel~yip~----~le~~~sL~tLdL~  318 (1081)
T KOG0618|consen  248 ISHNNLS-NLP-EWIGACANLEALNANHNRL---VALPLRISRITSLVSLSAAYNELEYIPP----FLEGLKSLRTLDLQ  318 (1081)
T ss_pred             cchhhhh-cch-HHHHhcccceEecccchhH---HhhHHHHhhhhhHHHHHhhhhhhhhCCC----cccccceeeeeeeh
Confidence            3567777 366 7788888888888888888   6778888888888888888888887544    77789999999999


Q ss_pred             CCCCChHHHHhh-ccccc-c-----------------------------cCCcccceeccccccccCCCCCCCccceecc
Q 038163           81 DSPLHISLLQSI-ASIFP-L-----------------------------LKNLSMIGCEVNGVIRGQDFPHSKSLEHLDM  129 (207)
Q Consensus        81 ~~~~~~~~~~~l-~~l~~-L-----------------------------~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l  129 (207)
                      .|.+.. .+... ..... +                             .+|.++....+       .+..+++|+.|+|
T Consensus       319 ~N~L~~-lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p-------~l~~~~hLKVLhL  390 (1081)
T KOG0618|consen  319 SNNLPS-LPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFP-------VLVNFKHLKVLHL  390 (1081)
T ss_pred             hccccc-cchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchh-------hhccccceeeeee
Confidence            998763 22211 10000 1                             33333332222       3445555555555


Q ss_pred             cccccccCchhHHHHHhcCCCccEEEccCCccCcccccchhhhhcCCCCCceEEecCCcCCCCccccccCCCCCccCC
Q 038163          130 EFMRIALNTSFLQIISESMSSLKYLSLSYYTLGINSSETLNQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILD  207 (207)
Q Consensus       130 ~~~~n~~~~~~~~~l~~~~~~L~~L~l~~n~~~~~~~i~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~  207 (207)
                      +  +|.+. .+|......+..|++|++++|.++   .+ |. ++..+..|++|...+|++. ..| .+..++.|+++|
T Consensus       391 s--yNrL~-~fpas~~~kle~LeeL~LSGNkL~---~L-p~-tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lD  458 (1081)
T KOG0618|consen  391 S--YNRLN-SFPASKLRKLEELEELNLSGNKLT---TL-PD-TVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLD  458 (1081)
T ss_pred             c--ccccc-cCCHHHHhchHHhHHHhcccchhh---hh-hH-HHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEe
Confidence            5  55554 333222215555555555555555   55 54 5555555555555555554 234 455555555543

>PLN03210 Resistant to P

Probab=99.32  E-value=1.1e-11  Score=114.26  Aligned_cols=75  Identities=27%  Similarity=0.354  Sum_probs=47.0

Q ss_pred             CCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcCCCCCChHHHHhhcccc
Q 038163           17 GLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDDSPLHISLLQSIASIF   96 (207)
Q Consensus        17 ~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~   96 (207)
                      ...+|++|+++++.+   ..++..+..+++|+.|+++++.....+|    .+..+++|++|++++|......+..+..++
T Consensus       609 ~~~~L~~L~L~~s~l---~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip----~ls~l~~Le~L~L~~c~~L~~lp~si~~L~  681 (1153)
T PLN03210        609 RPENLVKLQMQGSKL---EKLWDGVHSLTGLRNIDLRGSKNLKEIP----DLSMATNLETLKLSDCSSLVELPSSIQYLN  681 (1153)
T ss_pred             CccCCcEEECcCccc---cccccccccCCCCCEEECCCCCCcCcCC----ccccCCcccEEEecCCCCccccchhhhccC
Confidence            356677777777776   4566666667777777777665444445    456667777777777655445555555444


Q ss_pred             cc
Q 038163           97 PL   98 (207)
Q Consensus        97 ~L   98 (207)
                      +|
T Consensus       682 ~L  683 (1153)
T PLN03210        682 KL  683 (1153)
T ss_pred             CC
Confidence            44

syringae 6; Provisional

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.32  E-value=1.1e-12  Score=104.87  Aligned_cols=178  Identities=22%  Similarity=0.220  Sum_probs=97.1

Q ss_pred             cccCCCCCcEEecCCCcccCCCcchhhhcCCCC---CCEEEcCCCcCCccccc-chhcccCC-CCccEEEcCCCCCChH-
Q 038163           14 GYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSS---LNSLYLSSNNFTETVTI-TTQELHNF-TNMEYLKLDDSPLHIS-   87 (207)
Q Consensus        14 ~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~---L~~L~l~~n~~~~~~~~-~~~~l~~l-~~L~~L~l~~~~~~~~-   87 (207)
                      ++..+++|++|++++|.+  ....+..+..+..   |++|++++|.+++.... ....+..+ ++|+.|++++|.+++. 
T Consensus        76 ~l~~~~~L~~L~l~~~~~--~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~  153 (319)
T cd00116          76 GLTKGCGLQELDLSDNAL--GPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGAS  153 (319)
T ss_pred             HHHhcCceeEEEccCCCC--ChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchH
Confidence            345566777777777777  3344444444443   77777777776632110 00234455 6777777777776632 


Q ss_pred             ---HHHhhc---ccccc--cCCcccce----eccccccccCCCCCCCccceecccccccccCchhH----HHHHhcCCCc
Q 038163           88 ---LLQSIA---SIFPL--LKNLSMIG----CEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFL----QIISESMSSL  151 (207)
Q Consensus        88 ---~~~~l~---~l~~L--~~n~~~~~----~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~~~----~~l~~~~~~L  151 (207)
                         ....+.   .++.|  .+|.+++.    ++.       .+..+++|+.|+++  +|.+++...    ..+. .+++|
T Consensus       154 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~-------~l~~~~~L~~L~L~--~n~i~~~~~~~l~~~~~-~~~~L  223 (319)
T cd00116         154 CEALAKALRANRDLKELNLANNGIGDAGIRALAE-------GLKANCNLEVLDLN--NNGLTDEGASALAETLA-SLKSL  223 (319)
T ss_pred             HHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHH-------HHHhCCCCCEEecc--CCccChHHHHHHHHHhc-ccCCC
Confidence               222222   23333  55555431    112       33445678888888  777764433    3334 56678


Q ss_pred             cEEEccCCccCcccccchhhhhc----CCCCCceEEecCCcCCC----CccccccCCCCCccC
Q 038163          152 KYLSLSYYTLGINSSETLNQGLC----SLVHLQELYIASNDLRG----SLPWCMANMTSLRIL  206 (207)
Q Consensus       152 ~~L~l~~n~~~~~~~i~~~~~~~----~~~~L~~L~l~~n~l~~----~~p~~~~~l~~L~~l  206 (207)
                      +.|++++|.++  +.. ......    ..+.|+.|++++|.+.+    .+...+..+++|+.+
T Consensus       224 ~~L~ls~n~l~--~~~-~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l  283 (319)
T cd00116         224 EVLNLGDNNLT--DAG-AAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLEL  283 (319)
T ss_pred             CEEecCCCcCc--hHH-HHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEE
Confidence            88888888776  311 110111    13678888888887762    222344445555554

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.32  E-value=5.5e-14  Score=111.91  Aligned_cols=161  Identities=27%  Similarity=0.257  Sum_probs=122.8

Q ss_pred             CCccCceecCccccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcCCC
Q 038163            3 FNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDDS   82 (207)
Q Consensus         3 ~n~~~~~~p~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~~~   82 (207)
                      +|.+. .+|++ +..+.++..+++.+|.+   ...|+..-.++.|++||...|.+.. .|   +.++.+.+|+.|++..|
T Consensus       146 ~N~i~-slp~~-~~~~~~l~~l~~~~n~l---~~l~~~~i~m~~L~~ld~~~N~L~t-lP---~~lg~l~~L~~LyL~~N  216 (565)
T KOG0472|consen  146 NNQIS-SLPED-MVNLSKLSKLDLEGNKL---KALPENHIAMKRLKHLDCNSNLLET-LP---PELGGLESLELLYLRRN  216 (565)
T ss_pred             ccccc-cCchH-HHHHHHHHHhhccccch---hhCCHHHHHHHHHHhcccchhhhhc-CC---hhhcchhhhHHHHhhhc
Confidence            45555 56655 57777788888888888   4444433348888888888887765 55   58888999999999999


Q ss_pred             CCChHHHHhhcccccc-----cCCcccceeccccccccCCCCCCCccceecccccccccCchhHHHHHhcCCCccEEEcc
Q 038163           83 PLHISLLQSIASIFPL-----LKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSLS  157 (207)
Q Consensus        83 ~~~~~~~~~l~~l~~L-----~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L~l~  157 (207)
                      .+. .+| .+..+..|     +.|.+. .+|.-      ...+++++..||+.  .|++. +.|..+. -+.+|.+|+++
T Consensus       217 ki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae------~~~~L~~l~vLDLR--dNklk-e~Pde~c-lLrsL~rLDlS  283 (565)
T KOG0472|consen  217 KIR-FLP-EFPGCSLLKELHVGENQIE-MLPAE------HLKHLNSLLVLDLR--DNKLK-EVPDEIC-LLRSLERLDLS  283 (565)
T ss_pred             ccc-cCC-CCCccHHHHHHHhcccHHH-hhHHH------Hhcccccceeeecc--ccccc-cCchHHH-Hhhhhhhhccc
Confidence            886 344 66666665     444443 35541      45588999999999  99998 6777766 68899999999


Q ss_pred             CCccCcccccchhhhhcCCCCCceEEecCCcCCC
Q 038163          158 YYTLGINSSETLNQGLCSLVHLQELYIASNDLRG  191 (207)
Q Consensus       158 ~n~~~~~~~i~~~~~~~~~~~L~~L~l~~n~l~~  191 (207)
                      +|.++   .+ |. .++.+ .|+.|-+.+|.+.+
T Consensus       284 NN~is---~L-p~-sLgnl-hL~~L~leGNPlrT  311 (565)
T KOG0472|consen  284 NNDIS---SL-PY-SLGNL-HLKFLALEGNPLRT  311 (565)
T ss_pred             CCccc---cC-Cc-ccccc-eeeehhhcCCchHH
Confidence            99999   88 87 89988 89999999999873

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.29  E-value=4.5e-12  Score=92.32  Aligned_cols=124  Identities=22%  Similarity=0.335  Sum_probs=34.9

Q ss_pred             CCCCEEEcCCCcCCcccccchhccc-CCCCccEEEcCCCCCChHHHHhhcccccccCCcccceeccccccccCCCCCCCc
Q 038163           45 SSLNSLYLSSNNFTETVTITTQELH-NFTNMEYLKLDDSPLHISLLQSIASIFPLLKNLSMIGCEVNGVIRGQDFPHSKS  123 (207)
Q Consensus        45 ~~L~~L~l~~n~~~~~~~~~~~~l~-~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~n~~~~~~~~~~~~~~~~~~~~~~  123 (207)
                      ..++.|+|.+|.++..     +.+. .+.+|+.|++++|.+.                    .+.        .+..++.
T Consensus        19 ~~~~~L~L~~n~I~~I-----e~L~~~l~~L~~L~Ls~N~I~--------------------~l~--------~l~~L~~   65 (175)
T PF14580_consen   19 VKLRELNLRGNQISTI-----ENLGATLDKLEVLDLSNNQIT--------------------KLE--------GLPGLPR   65 (175)
T ss_dssp             ----------------------S--TT-TT--EEE-TTS--S----------------------T--------T----TT
T ss_pred             cccccccccccccccc-----cchhhhhcCCCEEECCCCCCc--------------------ccc--------CccChhh
Confidence            3455566666655543     2333 3455666666666655                    111        3444555


Q ss_pred             cceecccccccccCchhHHHHHhcCCCccEEEccCCccCcccccchhhhhcCCCCCceEEecCCcCCCCcc---ccccCC
Q 038163          124 LEHLDMEFMRIALNTSFLQIISESMSSLKYLSLSYYTLGINSSETLNQGLCSLVHLQELYIASNDLRGSLP---WCMANM  200 (207)
Q Consensus       124 L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L~l~~n~~~~~~~i~~~~~~~~~~~L~~L~l~~n~l~~~~p---~~~~~l  200 (207)
                      |+.|+++  +|.++. +...+...+++|++|++++|.+..-+++   ..+..+++|+.|++.+|+++...-   ..+..+
T Consensus        66 L~~L~L~--~N~I~~-i~~~l~~~lp~L~~L~L~~N~I~~l~~l---~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~l  139 (175)
T PF14580_consen   66 LKTLDLS--NNRISS-ISEGLDKNLPNLQELYLSNNKISDLNEL---EPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKL  139 (175)
T ss_dssp             --EEE----SS---S--CHHHHHH-TT--EEE-TTS---SCCCC---GGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-
T ss_pred             hhhcccC--CCCCCc-cccchHHhCCcCCEEECcCCcCCChHHh---HHHHcCCCcceeeccCCcccchhhHHHHHHHHc
Confidence            6666666  666653 2222211456666666666666522233   145556666666666666653211   334556


Q ss_pred             CCCccCC
Q 038163          201 TSLRILD  207 (207)
Q Consensus       201 ~~L~~l~  207 (207)
                      |+|+.||
T Consensus       140 P~Lk~LD  146 (175)
T PF14580_consen  140 PSLKVLD  146 (175)
T ss_dssp             TT-SEET
T ss_pred             ChhheeC
Confidence            6666554

>PLN03210 Resistant to P

Probab=99.27  E-value=4.8e-11  Score=110.13  Aligned_cols=176  Identities=19%  Similarity=0.183  Sum_probs=92.1

Q ss_pred             ccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcCCCCCChHHHHhhcc
Q 038163           15 YNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDDSPLHISLLQSIAS   94 (207)
Q Consensus        15 ~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~   94 (207)
                      +..+++|++|++++|..  ...+|..+..+++|+.|++++|.....+|   ..+ ++++|++|++++|......+....+
T Consensus       653 ls~l~~Le~L~L~~c~~--L~~lp~si~~L~~L~~L~L~~c~~L~~Lp---~~i-~l~sL~~L~Lsgc~~L~~~p~~~~n  726 (1153)
T PLN03210        653 LSMATNLETLKLSDCSS--LVELPSSIQYLNKLEDLDMSRCENLEILP---TGI-NLKSLYRLNLSGCSRLKSFPDISTN  726 (1153)
T ss_pred             cccCCcccEEEecCCCC--ccccchhhhccCCCCEEeCCCCCCcCccC---CcC-CCCCCCEEeCCCCCCccccccccCC
Confidence            35555666666655554  35556666666666666666654333444   222 4556666666665433333322233


Q ss_pred             cccc--cCCcccceecccc-ccccC----------------------CCCCCCccceecccccccccCchhHHHHHhcCC
Q 038163           95 IFPL--LKNLSMIGCEVNG-VIRGQ----------------------DFPHSKSLEHLDMEFMRIALNTSFLQIISESMS  149 (207)
Q Consensus        95 l~~L--~~n~~~~~~~~~~-~~~~~----------------------~~~~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~  149 (207)
                      +..|  .+|.+.. +|... ..++.                      ....+++|+.|+++  +|.....+|..+. .++
T Consensus       727 L~~L~L~~n~i~~-lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls--~n~~l~~lP~si~-~L~  802 (1153)
T PLN03210        727 ISWLDLDETAIEE-FPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLS--DIPSLVELPSSIQ-NLH  802 (1153)
T ss_pred             cCeeecCCCcccc-ccccccccccccccccccchhhccccccccchhhhhccccchheeCC--CCCCccccChhhh-CCC
Confidence            3333  3333221 22100 00000                      01123567778888  7766556777777 888


Q ss_pred             CccEEEccCCccCcccccchhhhhcCCC---------------------CCceEEecCCcCCCCccccccCCCCCccC
Q 038163          150 SLKYLSLSYYTLGINSSETLNQGLCSLV---------------------HLQELYIASNDLRGSLPWCMANMTSLRIL  206 (207)
Q Consensus       150 ~L~~L~l~~n~~~~~~~i~~~~~~~~~~---------------------~L~~L~l~~n~l~~~~p~~~~~l~~L~~l  206 (207)
                      +|+.|++++|...  +.+ |. .. .++                     +++.|++++|.+. .+|..+..+++|+.|
T Consensus       803 ~L~~L~Ls~C~~L--~~L-P~-~~-~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L  874 (1153)
T PLN03210        803 KLEHLEIENCINL--ETL-PT-GI-NLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIE-EVPWWIEKFSNLSFL  874 (1153)
T ss_pred             CCCEEECCCCCCc--Cee-CC-CC-CccccCEEECCCCCccccccccccccCEeECCCCCCc-cChHHHhcCCCCCEE
Confidence            8888888877433  255 43 22 233                     4455555555554 456666777777655

syringae 6; Provisional

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.20  E-value=2.9e-11  Score=105.91  Aligned_cols=112  Identities=19%  Similarity=0.142  Sum_probs=62.8

Q ss_pred             CccEEEcCCCCCChHHHHhhcccccc--cCCcccceecccc----cccc-----CCCC-CCCccceecccccccccCchh
Q 038163           73 NMEYLKLDDSPLHISLLQSIASIFPL--LKNLSMIGCEVNG----VIRG-----QDFP-HSKSLEHLDMEFMRIALNTSF  140 (207)
Q Consensus        73 ~L~~L~l~~~~~~~~~~~~l~~l~~L--~~n~~~~~~~~~~----~~~~-----~~~~-~~~~L~~L~l~~~~n~~~~~~  140 (207)
                      +|++|++++|.+. .+|.....+..|  ..|.+.. +|...    .+++     ..+. ...+|+.|+++  +|.++ .+
T Consensus       343 ~Lq~LdLS~N~Ls-~LP~lp~~L~~L~Ls~N~L~~-LP~l~~~L~~LdLs~N~Lt~LP~l~s~L~~LdLS--~N~Ls-sI  417 (788)
T PRK15387        343 GLQELSVSDNQLA-SLPTLPSELYKLWAYNNRLTS-LPALPSGLKELIVSGNRLTSLPVLPSELKELMVS--GNRLT-SL  417 (788)
T ss_pred             ccceEecCCCccC-CCCCCCcccceehhhcccccc-CcccccccceEEecCCcccCCCCcccCCCEEEcc--CCcCC-CC
Confidence            6788888888776 333333334433  4444443 23200    0000     0000 12356666666  66665 23


Q ss_pred             HHHHHhcCCCccEEEccCCccCcccccchhhhhcCCCCCceEEecCCcCCCCcccccc
Q 038163          141 LQIISESMSSLKYLSLSYYTLGINSSETLNQGLCSLVHLQELYIASNDLRGSLPWCMA  198 (207)
Q Consensus       141 ~~~l~~~~~~L~~L~l~~n~~~~~~~i~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~  198 (207)
                      |..    ..+|+.|++++|.++   .+ |. .+..+++|+.+++++|++++..+..+.
T Consensus       418 P~l----~~~L~~L~Ls~NqLt---~L-P~-sl~~L~~L~~LdLs~N~Ls~~~~~~L~  466 (788)
T PRK15387        418 PML----PSGLLSLSVYRNQLT---RL-PE-SLIHLSSETTVNLEGNPLSERTLQALR  466 (788)
T ss_pred             Ccc----hhhhhhhhhccCccc---cc-Ch-HHhhccCCCeEECCCCCCCchHHHHHH
Confidence            322    124667777777777   77 76 777888888888888888876665553

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.18  E-value=3.7e-11  Score=105.27  Aligned_cols=49  Identities=27%  Similarity=0.176  Sum_probs=31.5

Q ss_pred             CccEEEccCCccCcccccchhhhhcCCCCCceEEecCCcCCCCccccccCCCCCccCC
Q 038163          150 SLKYLSLSYYTLGINSSETLNQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILD  207 (207)
Q Consensus       150 ~L~~L~l~~n~~~~~~~i~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~  207 (207)
                      .|+.|++++|.++   .+ |. .   ..+|+.|++++|+++ .+|..+..+++|+.++
T Consensus       403 ~L~~LdLS~N~Ls---sI-P~-l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~Ld  451 (788)
T PRK15387        403 ELKELMVSGNRLT---SL-PM-L---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVN  451 (788)
T ss_pred             CCCEEEccCCcCC---CC-Cc-c---hhhhhhhhhccCccc-ccChHHhhccCCCeEE
Confidence            4566666666665   45 43 2   235667777777776 5677777777777653

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.18  E-value=4e-12  Score=101.07  Aligned_cols=74  Identities=15%  Similarity=0.131  Sum_probs=56.7

Q ss_pred             CCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcCC-CCCChHHHHhhcccccc
Q 038163           20 KLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDD-SPLHISLLQSIASIFPL   98 (207)
Q Consensus        20 ~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~~-~~~~~~~~~~l~~l~~L   98 (207)
                      ..++++|..|+|  ....+..|..+++|+.|||+.|.|+.+.|   ..+..++++-.|-+++ |.|+..-...+..|.++
T Consensus        68 ~tveirLdqN~I--~~iP~~aF~~l~~LRrLdLS~N~Is~I~p---~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~sl  142 (498)
T KOG4237|consen   68 ETVEIRLDQNQI--SSIPPGAFKTLHRLRRLDLSKNNISFIAP---DAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSL  142 (498)
T ss_pred             cceEEEeccCCc--ccCChhhccchhhhceecccccchhhcCh---HhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHH
Confidence            346789999999  34445689999999999999999999999   7888888877775555 88885444455555554

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.17  E-value=7.6e-13  Score=109.41  Aligned_cols=166  Identities=23%  Similarity=0.243  Sum_probs=126.0

Q ss_pred             CCCCccCceecCccccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcC
Q 038163            1 MSFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLD   80 (207)
Q Consensus         1 l~~n~~~~~~p~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~   80 (207)
                      |+.|.+. .+|.+ ++.+..|+.+.+..|.+   -.+|..+.++..|.++|++.|.++. .|   ..++.++ |+.|-++
T Consensus        82 lsrNR~~-elp~~-~~~f~~Le~liLy~n~~---r~ip~~i~~L~~lt~l~ls~NqlS~-lp---~~lC~lp-Lkvli~s  151 (722)
T KOG0532|consen   82 LSRNRFS-ELPEE-ACAFVSLESLILYHNCI---RTIPEAICNLEALTFLDLSSNQLSH-LP---DGLCDLP-LKVLIVS  151 (722)
T ss_pred             ccccccc-cCchH-HHHHHHHHHHHHHhccc---eecchhhhhhhHHHHhhhccchhhc-CC---hhhhcCc-ceeEEEe
Confidence            4567777 57765 47777888888888888   5678888888888888888888875 45   4666655 8888888


Q ss_pred             CCCCChHHHHhhcccccc-----cCCcccceeccccccccCCCCCCCccceecccccccccCchhHHHHHhcCCCccEEE
Q 038163           81 DSPLHISLLQSIASIFPL-----LKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLS  155 (207)
Q Consensus        81 ~~~~~~~~~~~l~~l~~L-----~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L~  155 (207)
                      +|+++ .++..++.+..|     +.|.+.. +|.       .++.+.+|+.+.+.  .|.+. .+|+.+. .+ .|..|+
T Consensus       152 NNkl~-~lp~~ig~~~tl~~ld~s~nei~s-lps-------ql~~l~slr~l~vr--Rn~l~-~lp~El~-~L-pLi~lD  217 (722)
T KOG0532|consen  152 NNKLT-SLPEEIGLLPTLAHLDVSKNEIQS-LPS-------QLGYLTSLRDLNVR--RNHLE-DLPEELC-SL-PLIRLD  217 (722)
T ss_pred             cCccc-cCCcccccchhHHHhhhhhhhhhh-chH-------HhhhHHHHHHHHHh--hhhhh-hCCHHHh-CC-ceeeee
Confidence            88876 556666544444     6666654 565       78888888888888  88876 5666666 44 488999


Q ss_pred             ccCCccCcccccchhhhhcCCCCCceEEecCCcCCCCcccc
Q 038163          156 LSYYTLGINSSETLNQGLCSLVHLQELYIASNDLRGSLPWC  196 (207)
Q Consensus       156 l~~n~~~~~~~i~~~~~~~~~~~L~~L~l~~n~l~~~~p~~  196 (207)
                      +++|+++   .| |. .|.++..|++|-|..|.++. .|..
T Consensus       218 fScNkis---~i-Pv-~fr~m~~Lq~l~LenNPLqS-PPAq  252 (722)
T KOG0532|consen  218 FSCNKIS---YL-PV-DFRKMRHLQVLQLENNPLQS-PPAQ  252 (722)
T ss_pred             cccCcee---ec-ch-hhhhhhhheeeeeccCCCCC-ChHH
Confidence            9999998   88 88 99999999999999999985 3443

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.16  E-value=6.2e-11  Score=104.04  Aligned_cols=62  Identities=21%  Similarity=0.232  Sum_probs=39.7

Q ss_pred             CccceecccccccccCchhHHHHHhcCCCccEEEccCCccCcccccchhhhhcCCCCCceEEecCCcCCCCccccc
Q 038163          122 KSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSLSYYTLGINSSETLNQGLCSLVHLQELYIASNDLRGSLPWCM  197 (207)
Q Consensus       122 ~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L~l~~n~~~~~~~i~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~  197 (207)
                      ++|+.|+++  +|.++. +|..+   .++|+.|++++|.++   .+ |. .+  .++|+.|++++|.+.. +|..+
T Consensus       325 ~sL~~L~Ls--~N~Lt~-LP~~l---~~sL~~L~Ls~N~L~---~L-P~-~l--p~~L~~LdLs~N~Lt~-LP~~l  386 (754)
T PRK15370        325 PGLKTLEAG--ENALTS-LPASL---PPELQVLDVSKNQIT---VL-PE-TL--PPTITTLDVSRNALTN-LPENL  386 (754)
T ss_pred             ccceecccc--CCcccc-CChhh---cCcccEEECCCCCCC---cC-Ch-hh--cCCcCEEECCCCcCCC-CCHhH
Confidence            466777777  776653 44332   257778888888776   66 65 44  3578888888888774 45433

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.12  E-value=1.7e-10  Score=101.38  Aligned_cols=61  Identities=21%  Similarity=0.255  Sum_probs=43.6

Q ss_pred             CccceecccccccccCchhHHHHHhcCCCccEEEccCCccCcccccchhhhhcCCCCCceEEecCCcCCCCcccc
Q 038163          122 KSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSLSYYTLGINSSETLNQGLCSLVHLQELYIASNDLRGSLPWC  196 (207)
Q Consensus       122 ~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L~l~~n~~~~~~~i~~~~~~~~~~~L~~L~l~~n~l~~~~p~~  196 (207)
                      ++|+.|+++  +|.++ .+|..+   .+.|+.|++++|.++   .+ |. .+.  .+|+.|++++|++. .+|..
T Consensus       346 ~sL~~L~Ls--~N~L~-~LP~~l---p~~L~~LdLs~N~Lt---~L-P~-~l~--~sL~~LdLs~N~L~-~LP~s  406 (754)
T PRK15370        346 PELQVLDVS--KNQIT-VLPETL---PPTITTLDVSRNALT---NL-PE-NLP--AALQIMQASRNNLV-RLPES  406 (754)
T ss_pred             CcccEEECC--CCCCC-cCChhh---cCCcCEEECCCCcCC---CC-CH-hHH--HHHHHHhhccCCcc-cCchh
Confidence            578888888  88886 455443   257888888888887   77 65 443  36888888888887 34543

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.07  E-value=4e-11  Score=87.39  Aligned_cols=129  Identities=22%  Similarity=0.253  Sum_probs=39.2

Q ss_pred             cCCCCCcEEecCCCcccCCCcchhhhc-CCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcCCCCCChHHHHhhcc
Q 038163           16 NGLRKLKSLDLSGVGVRDGSKLLQSIG-SFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDDSPLHISLLQSIAS   94 (207)
Q Consensus        16 ~~l~~L~~L~ls~n~i~~~~~~~~~~~-~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~   94 (207)
                      .+..++++|+|.+|.|   ..+. .++ .+.+|+.|++++|.++..     ..+..++.|++|++++|.++....     
T Consensus        16 ~n~~~~~~L~L~~n~I---~~Ie-~L~~~l~~L~~L~Ls~N~I~~l-----~~l~~L~~L~~L~L~~N~I~~i~~-----   81 (175)
T PF14580_consen   16 NNPVKLRELNLRGNQI---STIE-NLGATLDKLEVLDLSNNQITKL-----EGLPGLPRLKTLDLSNNRISSISE-----   81 (175)
T ss_dssp             ------------------------S--TT-TT--EEE-TTS--S-------TT----TT--EEE--SS---S-CH-----
T ss_pred             cccccccccccccccc---cccc-chhhhhcCCCEEECCCCCCccc-----cCccChhhhhhcccCCCCCCcccc-----
Confidence            5556788999999999   3333 344 578999999999999864     467788999999999999873211     


Q ss_pred             cccccCCcccceeccccccccCCC-CCCCccceecccccccccCch-hHHHHHhcCCCccEEEccCCccCcccccchhhh
Q 038163           95 IFPLLKNLSMIGCEVNGVIRGQDF-PHSKSLEHLDMEFMRIALNTS-FLQIISESMSSLKYLSLSYYTLGINSSETLNQG  172 (207)
Q Consensus        95 l~~L~~n~~~~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~n~~~~~-~~~~l~~~~~~L~~L~l~~n~~~~~~~i~~~~~  172 (207)
                                            .+ ..+++|+.|.++  +|.+... ....+. .+++|+.|++.+|.+...... ....
T Consensus        82 ----------------------~l~~~lp~L~~L~L~--~N~I~~l~~l~~L~-~l~~L~~L~L~~NPv~~~~~Y-R~~v  135 (175)
T PF14580_consen   82 ----------------------GLDKNLPNLQELYLS--NNKISDLNELEPLS-SLPKLRVLSLEGNPVCEKKNY-RLFV  135 (175)
T ss_dssp             ----------------------HHHHH-TT--EEE-T--TS---SCCCCGGGG-G-TT--EEE-TT-GGGGSTTH-HHHH
T ss_pred             ----------------------chHHhCCcCCEEECc--CCcCCChHHhHHHH-cCCCcceeeccCCcccchhhH-HHHH
Confidence                                  11 124455566666  5555421 123344 555666666666655522222 1123


Q ss_pred             hcCCCCCceEEe
Q 038163          173 LCSLVHLQELYI  184 (207)
Q Consensus       173 ~~~~~~L~~L~l  184 (207)
                      +..+++|+.||-
T Consensus       136 i~~lP~Lk~LD~  147 (175)
T PF14580_consen  136 IYKLPSLKVLDG  147 (175)
T ss_dssp             HHH-TT-SEETT
T ss_pred             HHHcChhheeCC
Confidence            445566665553

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.05  E-value=2.8e-12  Score=111.06  Aligned_cols=183  Identities=20%  Similarity=0.157  Sum_probs=131.2

Q ss_pred             CCccCceecCccccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccc-----------------h
Q 038163            3 FNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTIT-----------------T   65 (207)
Q Consensus         3 ~n~~~~~~p~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~-----------------~   65 (207)
                      +|.+. .+|.+ +..+.+|+.|++..|.+   ..+|....++.+|++|+|..|++....+-.                 +
T Consensus       273 ~N~l~-~lp~r-i~~~~~L~~l~~~~nel---~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l  347 (1081)
T KOG0618|consen  273 HNRLV-ALPLR-ISRITSLVSLSAAYNEL---EYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKL  347 (1081)
T ss_pred             chhHH-hhHHH-HhhhhhHHHHHhhhhhh---hhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccc
Confidence            44453 45533 46666777777777776   556666666777777777777665321100                 0


Q ss_pred             -----hcccCCCCccEEEcCCCCCChHHHHhhcccccc-----cCCcccceeccccccccCCCCCCCccceecccccccc
Q 038163           66 -----QELHNFTNMEYLKLDDSPLHISLLQSIASIFPL-----LKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIA  135 (207)
Q Consensus        66 -----~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L-----~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~  135 (207)
                           ..-..++.|+.|.+.+|.+++...+.+.....|     ++|++.. +|..      .+.++..|+.|+++  ||+
T Consensus       348 ~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~-fpas------~~~kle~LeeL~LS--GNk  418 (1081)
T KOG0618|consen  348 STLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNS-FPAS------KLRKLEELEELNLS--GNK  418 (1081)
T ss_pred             cccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeeccccccc-CCHH------HHhchHHhHHHhcc--cch
Confidence                 011135668888888898887766666666655     8888765 5543      78889999999999  999


Q ss_pred             cCchhHHHHHhcCCCccEEEccCCccCcccccchhhhhcCCCCCceEEecCCcCCCCccccccCCCCCccCC
Q 038163          136 LNTSFLQIISESMSSLKYLSLSYYTLGINSSETLNQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILD  207 (207)
Q Consensus       136 ~~~~~~~~l~~~~~~L~~L~l~~n~~~~~~~i~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~  207 (207)
                      ++ .+|..+. .|+.|+.|..-.|.+.   .+ |  .+..++.|+.+|++.|.++..........++|++||
T Consensus       419 L~-~Lp~tva-~~~~L~tL~ahsN~l~---~f-P--e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLd  482 (1081)
T KOG0618|consen  419 LT-TLPDTVA-NLGRLHTLRAHSNQLL---SF-P--ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLD  482 (1081)
T ss_pred             hh-hhhHHHH-hhhhhHHHhhcCCcee---ec-h--hhhhcCcceEEecccchhhhhhhhhhCCCcccceee
Confidence            98 7788888 8999999999999998   77 6  688899999999999999864333334448888876

>PLN03150 hypothetical protein; Provisional

Probab=98.99  E-value=1.3e-09  Score=94.78  Aligned_cols=60  Identities=23%  Similarity=0.394  Sum_probs=27.7

Q ss_pred             CcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcCCCCCC
Q 038163           21 LKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDDSPLH   85 (207)
Q Consensus        21 L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~   85 (207)
                      ++.|+|++|.+  .+.+|..+..+++|+.|++++|.+.+.+|   ..+..+++|+.|++++|.+.
T Consensus       420 v~~L~L~~n~L--~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP---~~~~~l~~L~~LdLs~N~ls  479 (623)
T PLN03150        420 IDGLGLDNQGL--RGFIPNDISKLRHLQSINLSGNSIRGNIP---PSLGSITSLEVLDLSYNSFN  479 (623)
T ss_pred             EEEEECCCCCc--cccCCHHHhCCCCCCEEECCCCcccCcCC---hHHhCCCCCCEEECCCCCCC
Confidence            33444444444  34444444444444444444444444444   34444444444444444443

>PLN03150 hypothetical protein; Provisional

Probab=98.98  E-value=8.1e-10  Score=95.97  Aligned_cols=88  Identities=25%  Similarity=0.438  Sum_probs=80.2

Q ss_pred             CCCCccCceecCccccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcC
Q 038163            1 MSFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLD   80 (207)
Q Consensus         1 l~~n~~~~~~p~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~   80 (207)
                      |++|.+.|.+|+. +..+++|+.|++++|.+  .+.+|..+..+++|+.|++++|.+++.+|   ..+..+++|++|+++
T Consensus       425 L~~n~L~g~ip~~-i~~L~~L~~L~Ls~N~l--~g~iP~~~~~l~~L~~LdLs~N~lsg~iP---~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        425 LDNQGLRGFIPND-ISKLRHLQSINLSGNSI--RGNIPPSLGSITSLEVLDLSYNSFNGSIP---ESLGQLTSLRILNLN  498 (623)
T ss_pred             CCCCCccccCCHH-HhCCCCCCEEECCCCcc--cCcCChHHhCCCCCCEEECCCCCCCCCCc---hHHhcCCCCCEEECc
Confidence            5678899999866 79999999999999999  67899999999999999999999999999   889999999999999


Q ss_pred             CCCCChHHHHhhcc
Q 038163           81 DSPLHISLLQSIAS   94 (207)
Q Consensus        81 ~~~~~~~~~~~l~~   94 (207)
                      +|.+.+..|..+..
T Consensus       499 ~N~l~g~iP~~l~~  512 (623)
T PLN03150        499 GNSLSGRVPAALGG  512 (623)
T ss_pred             CCcccccCChHHhh
Confidence            99999888777654

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.96  E-value=1.2e-10  Score=90.24  Aligned_cols=125  Identities=23%  Similarity=0.268  Sum_probs=93.3

Q ss_pred             CCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcCCCCCChH--HHHhhccc
Q 038163           18 LRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDDSPLHIS--LLQSIASI   95 (207)
Q Consensus        18 l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~--~~~~l~~l   95 (207)
                      -+.|+++|+|+|.|   ..+.+++.-.|.++.|+++.|.+..+     +.+..+++|+.||+++|.+...  .-..++++
T Consensus       283 Wq~LtelDLS~N~I---~~iDESvKL~Pkir~L~lS~N~i~~v-----~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNI  354 (490)
T KOG1259|consen  283 WQELTELDLSGNLI---TQIDESVKLAPKLRRLILSQNRIRTV-----QNLAELPQLQLLDLSGNLLAECVGWHLKLGNI  354 (490)
T ss_pred             Hhhhhhccccccch---hhhhhhhhhccceeEEeccccceeee-----hhhhhcccceEeecccchhHhhhhhHhhhcCE
Confidence            46688999999999   77888998899999999999999865     5788999999999999987632  23345555


Q ss_pred             ccc--cCCcccceeccccccccCCCCCCCccceecccccccccCch-hHHHHHhcCCCccEEEccCCccC
Q 038163           96 FPL--LKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTS-FLQIISESMSSLKYLSLSYYTLG  162 (207)
Q Consensus        96 ~~L--~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~-~~~~l~~~~~~L~~L~l~~n~~~  162 (207)
                      ..|  ++|.+.. + +       ++.++.+|..||+.  +|++... ....++ .+|.|..+.+.+|.++
T Consensus       355 KtL~La~N~iE~-L-S-------GL~KLYSLvnLDl~--~N~Ie~ldeV~~IG-~LPCLE~l~L~~NPl~  412 (490)
T KOG1259|consen  355 KTLKLAQNKIET-L-S-------GLRKLYSLVNLDLS--SNQIEELDEVNHIG-NLPCLETLRLTGNPLA  412 (490)
T ss_pred             eeeehhhhhHhh-h-h-------hhHhhhhheecccc--ccchhhHHHhcccc-cccHHHHHhhcCCCcc
Confidence            555  5555543 1 1       56667777778887  7777532 235566 7777777777777776

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.92  E-value=2.1e-11  Score=101.07  Aligned_cols=164  Identities=25%  Similarity=0.313  Sum_probs=136.7

Q ss_pred             cCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcCCCCCChHHHHhhccc
Q 038163           16 NGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDDSPLHISLLQSIASI   95 (207)
Q Consensus        16 ~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l   95 (207)
                      ..+......|++.|++   .++|..+..+..|+.+.++.|.+... |   ..+..+..|.+++++.|+++ .++..++.|
T Consensus        72 ~~ltdt~~aDlsrNR~---~elp~~~~~f~~Le~liLy~n~~r~i-p---~~i~~L~~lt~l~ls~NqlS-~lp~~lC~l  143 (722)
T KOG0532|consen   72 YDLTDTVFADLSRNRF---SELPEEACAFVSLESLILYHNCIRTI-P---EAICNLEALTFLDLSSNQLS-HLPDGLCDL  143 (722)
T ss_pred             ccccchhhhhcccccc---ccCchHHHHHHHHHHHHHHhccceec-c---hhhhhhhHHHHhhhccchhh-cCChhhhcC
Confidence            4455566789999999   78999999999999999999998864 5   57889999999999999987 566666554


Q ss_pred             c--cc--cCCcccceeccccccccCCCCCCCccceecccccccccCchhHHHHHhcCCCccEEEccCCccCcccccchhh
Q 038163           96 F--PL--LKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSLSYYTLGINSSETLNQ  171 (207)
Q Consensus        96 ~--~L--~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L~l~~n~~~~~~~i~~~~  171 (207)
                      +  -|  ..|+++. +|.       .++..+.|..+|.+  +|.+. .+|..+. .+.+|+.|.+..|.+.   .+ |. 
T Consensus       144 pLkvli~sNNkl~~-lp~-------~ig~~~tl~~ld~s--~nei~-slpsql~-~l~slr~l~vrRn~l~---~l-p~-  206 (722)
T KOG0532|consen  144 PLKVLIVSNNKLTS-LPE-------EIGLLPTLAHLDVS--KNEIQ-SLPSQLG-YLTSLRDLNVRRNHLE---DL-PE-  206 (722)
T ss_pred             cceeEEEecCcccc-CCc-------ccccchhHHHhhhh--hhhhh-hchHHhh-hHHHHHHHHHhhhhhh---hC-CH-
Confidence            4  33  7777664 676       77888999999999  99987 6788888 8999999999999998   88 87 


Q ss_pred             hhcCCCCCceEEecCCcCCCCccccccCCCCCccC
Q 038163          172 GLCSLVHLQELYIASNDLRGSLPWCMANMTSLRIL  206 (207)
Q Consensus       172 ~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l  206 (207)
                      .+..+ .|..||++.|++. .+|-+|.+|+.|++|
T Consensus       207 El~~L-pLi~lDfScNkis-~iPv~fr~m~~Lq~l  239 (722)
T KOG0532|consen  207 ELCSL-PLIRLDFSCNKIS-YLPVDFRKMRHLQVL  239 (722)
T ss_pred             HHhCC-ceeeeecccCcee-ecchhhhhhhhheee
Confidence            77744 4889999999998 589999999999875

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.88  E-value=2.2e-09  Score=64.71  Aligned_cols=60  Identities=33%  Similarity=0.536  Sum_probs=51.4

Q ss_pred             CCCcEEecCCCcccCCCcch-hhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcCCCCC
Q 038163           19 RKLKSLDLSGVGVRDGSKLL-QSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDDSPL   84 (207)
Q Consensus        19 ~~L~~L~ls~n~i~~~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~~~~~   84 (207)
                      ++|++|++++|.+   ..+| ..|..+++|++|++++|.+....+   ..+..+++|++|++++|.+
T Consensus         1 p~L~~L~l~~n~l---~~i~~~~f~~l~~L~~L~l~~N~l~~i~~---~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKL---TEIPPDSFSNLPNLETLDLSNNNLTSIPP---DAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTE---SEECTTTTTTGTTESEEEETSSSESEEET---TTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCC---CccCHHHHcCCCCCCEeEccCCccCccCH---HHHcCCCCCCEEeCcCCcC
Confidence            4688999999999   4455 578889999999999999998777   7889999999999999874

...

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.88  E-value=1.3e-09  Score=89.86  Aligned_cols=167  Identities=27%  Similarity=0.360  Sum_probs=118.1

Q ss_pred             CCCccCceecCccccCCC-CCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcC
Q 038163            2 SFNEINNLVVPQGYNGLR-KLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLD   80 (207)
Q Consensus         2 ~~n~~~~~~p~~~~~~l~-~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~   80 (207)
                      .+|.++ .+|+. ...+. +|++|+++.|.+   ..+|..+..+++|+.|+++.|.++...+    ..+..+.|+.|+++
T Consensus       124 ~~n~i~-~i~~~-~~~~~~nL~~L~l~~N~i---~~l~~~~~~l~~L~~L~l~~N~l~~l~~----~~~~~~~L~~L~ls  194 (394)
T COG4886         124 DNNNIT-DIPPL-IGLLKSNLKELDLSDNKI---ESLPSPLRNLPNLKNLDLSFNDLSDLPK----LLSNLSNLNNLDLS  194 (394)
T ss_pred             CCcccc-cCccc-cccchhhcccccccccch---hhhhhhhhccccccccccCCchhhhhhh----hhhhhhhhhheecc
Confidence            345555 46654 35553 888889999888   5666778888899999999998887543    33477888889999


Q ss_pred             CCCCChHHHHh---hcccccc--cCCcccceeccccccccCCCCCCCccceecccccccccCchhHHHHHhcCCCccEEE
Q 038163           81 DSPLHISLLQS---IASIFPL--LKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLS  155 (207)
Q Consensus        81 ~~~~~~~~~~~---l~~l~~L--~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L~  155 (207)
                      +|.+. .++..   ...+..+  +.|.... .+.       .+..+..+..+.+.  .|++. ..+..+. .++.++.|+
T Consensus       195 ~N~i~-~l~~~~~~~~~L~~l~~~~N~~~~-~~~-------~~~~~~~l~~l~l~--~n~~~-~~~~~~~-~l~~l~~L~  261 (394)
T COG4886         195 GNKIS-DLPPEIELLSALEELDLSNNSIIE-LLS-------SLSNLKNLSGLELS--NNKLE-DLPESIG-NLSNLETLD  261 (394)
T ss_pred             CCccc-cCchhhhhhhhhhhhhhcCCccee-cch-------hhhhcccccccccC--Cceee-eccchhc-cccccceec
Confidence            98876 33332   2335555  4453222 233       56677788888877  77775 3356666 777899999


Q ss_pred             ccCCccCcccccchhhhhcCCCCCceEEecCCcCCCCcccc
Q 038163          156 LSYYTLGINSSETLNQGLCSLVHLQELYIASNDLRGSLPWC  196 (207)
Q Consensus       156 l~~n~~~~~~~i~~~~~~~~~~~L~~L~l~~n~l~~~~p~~  196 (207)
                      +++|.++   .+ +  .+....+++.|++++|.+....|..
T Consensus       262 ~s~n~i~---~i-~--~~~~~~~l~~L~~s~n~~~~~~~~~  296 (394)
T COG4886         262 LSNNQIS---SI-S--SLGSLTNLRELDLSGNSLSNALPLI  296 (394)
T ss_pred             ccccccc---cc-c--cccccCccCEEeccCccccccchhh
Confidence            9999998   76 4  3778899999999999988655543

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.80  E-value=2.5e-09  Score=86.35  Aligned_cols=162  Identities=20%  Similarity=0.179  Sum_probs=99.0

Q ss_pred             ccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcCCCCCChHHH-Hhhc
Q 038163           15 YNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDDSPLHISLL-QSIA   93 (207)
Q Consensus        15 ~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~l~   93 (207)
                      ...+++++.||+|.|-+..+..+-+....+++|+.|+++.|.+....-.  ..-..+++|+.|.++.|.++.... ..+.
T Consensus       142 ~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s--~~~~~l~~lK~L~l~~CGls~k~V~~~~~  219 (505)
T KOG3207|consen  142 SKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISS--NTTLLLSHLKQLVLNSCGLSWKDVQWILL  219 (505)
T ss_pred             hhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccc--cchhhhhhhheEEeccCCCCHHHHHHHHH
Confidence            4567788888888887744445556667788888888888876533220  111256778888888888875432 2233


Q ss_pred             ccccc-----cCCcccceeccccccccCCCCCCCccceecccccccccCchh-HHHHHhcCCCccEEEccCCccCccccc
Q 038163           94 SIFPL-----LKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSF-LQIISESMSSLKYLSLSYYTLGINSSE  167 (207)
Q Consensus        94 ~l~~L-----~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~~-~~~l~~~~~~L~~L~l~~n~~~~~~~i  167 (207)
                      .++++     .+|........       ...-+..|+.|||+  +|.+-... ..... .++.|..|+++.|.+.   ++
T Consensus       220 ~fPsl~~L~L~~N~~~~~~~~-------~~~i~~~L~~LdLs--~N~li~~~~~~~~~-~l~~L~~Lnls~tgi~---si  286 (505)
T KOG3207|consen  220 TFPSLEVLYLEANEIILIKAT-------STKILQTLQELDLS--NNNLIDFDQGYKVG-TLPGLNQLNLSSTGIA---SI  286 (505)
T ss_pred             hCCcHHHhhhhcccccceecc-------hhhhhhHHhhcccc--CCcccccccccccc-cccchhhhhccccCcc---hh
Confidence            44444     45532221122       33345678888888  77654222 23444 6788888888888776   43


Q ss_pred             c-hh----hhhcCCCCCceEEecCCcCCC
Q 038163          168 T-LN----QGLCSLVHLQELYIASNDLRG  191 (207)
Q Consensus       168 ~-~~----~~~~~~~~L~~L~l~~n~l~~  191 (207)
                      + |.    +....+++|+.|++..|++..
T Consensus       287 ~~~d~~s~~kt~~f~kL~~L~i~~N~I~~  315 (505)
T KOG3207|consen  287 AEPDVESLDKTHTFPKLEYLNISENNIRD  315 (505)
T ss_pred             cCCCccchhhhcccccceeeecccCcccc
Confidence            1 22    012346788888888888864

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.78  E-value=1.7e-09  Score=87.35  Aligned_cols=140  Identities=21%  Similarity=0.198  Sum_probs=86.0

Q ss_pred             cCCCCCcEEecCCCcccCCCcch--hhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcCCCCCChHHHHhhc
Q 038163           16 NGLRKLKSLDLSGVGVRDGSKLL--QSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDDSPLHISLLQSIA   93 (207)
Q Consensus        16 ~~l~~L~~L~ls~n~i~~~~~~~--~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~   93 (207)
                      .++.+|+++.+.++.+.   ..+  .....|++++.|||+.|-+..+.+.. .....+++|+.|.++.|.+......   
T Consensus       118 sn~kkL~~IsLdn~~V~---~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~-~i~eqLp~Le~LNls~Nrl~~~~~s---  190 (505)
T KOG3207|consen  118 SNLKKLREISLDNYRVE---DAGIEEYSKILPNVRDLDLSRNLFHNWFPVL-KIAEQLPSLENLNLSSNRLSNFISS---  190 (505)
T ss_pred             hhHHhhhheeecCcccc---ccchhhhhhhCCcceeecchhhhHHhHHHHH-HHHHhcccchhcccccccccCCccc---
Confidence            56788999999999983   223  46678999999999999888765421 4456899999999999987621100   


Q ss_pred             ccccccCCcccceeccccccccCCCCCCCccceecccccccccCchhHHHHHhcCCCccEEEccCCccCcccccchhhhh
Q 038163           94 SIFPLLKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSLSYYTLGINSSETLNQGL  173 (207)
Q Consensus        94 ~l~~L~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L~l~~n~~~~~~~i~~~~~~  173 (207)
                                  .          .-..+.+|+.|.++  .|.+++.....+...||+|..|+++.|...  ... .. ..
T Consensus       191 ------------~----------~~~~l~~lK~L~l~--~CGls~k~V~~~~~~fPsl~~L~L~~N~~~--~~~-~~-~~  242 (505)
T KOG3207|consen  191 ------------N----------TTLLLSHLKQLVLN--SCGLSWKDVQWILLTFPSLEVLYLEANEII--LIK-AT-ST  242 (505)
T ss_pred             ------------c----------chhhhhhhheEEec--cCCCCHHHHHHHHHhCCcHHHhhhhccccc--cee-cc-hh
Confidence                        0          11123455666666  666665444433335666666666666321  011 11 22


Q ss_pred             cCCCCCceEEecCCcCC
Q 038163          174 CSLVHLQELYIASNDLR  190 (207)
Q Consensus       174 ~~~~~L~~L~l~~n~l~  190 (207)
                      .-++.|++|||++|.+.
T Consensus       243 ~i~~~L~~LdLs~N~li  259 (505)
T KOG3207|consen  243 KILQTLQELDLSNNNLI  259 (505)
T ss_pred             hhhhHHhhccccCCccc
Confidence            33455566666666554

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.70  E-value=6.3e-09  Score=81.85  Aligned_cols=170  Identities=21%  Similarity=0.189  Sum_probs=106.1

Q ss_pred             ccCCCCCcEEecCCCcccCCCcchh----hhcCCCCCCEEEcCCCcCCcccccc----------hhcccCCCCccEEEcC
Q 038163           15 YNGLRKLKSLDLSGVGVRDGSKLLQ----SIGSFSSLNSLYLSSNNFTETVTIT----------TQELHNFTNMEYLKLD   80 (207)
Q Consensus        15 ~~~l~~L~~L~ls~n~i~~~~~~~~----~~~~l~~L~~L~l~~n~~~~~~~~~----------~~~l~~l~~L~~L~l~   80 (207)
                      +...++|++|+||.|-+  ....++    .+..+..|++|.|++|.+.......          ......-+.|+++...
T Consensus        88 L~~~~~L~~ldLSDNA~--G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~  165 (382)
T KOG1909|consen   88 LLGCPKLQKLDLSDNAF--GPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICG  165 (382)
T ss_pred             HhcCCceeEeecccccc--CccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEee
Confidence            45566888888888888  444333    4456778888888888765322100          0112334678888888


Q ss_pred             CCCCChH----HHHhhcccccc-----cCCcccceeccccccccCCCCCCCccceecccccccccCchh----HHHHHhc
Q 038163           81 DSPLHIS----LLQSIASIFPL-----LKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSF----LQIISES  147 (207)
Q Consensus        81 ~~~~~~~----~~~~l~~l~~L-----~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~~----~~~l~~~  147 (207)
                      +|++...    ....+...+.|     ..|.+...-.   -+--+.+.++++|+.||+.  .|.|+...    ...+. .
T Consensus       166 rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~---~al~eal~~~~~LevLdl~--DNtft~egs~~LakaL~-s  239 (382)
T KOG1909|consen  166 RNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGV---TALAEALEHCPHLEVLDLR--DNTFTLEGSVALAKALS-S  239 (382)
T ss_pred             ccccccccHHHHHHHHHhccccceEEEecccccCchh---HHHHHHHHhCCcceeeecc--cchhhhHHHHHHHHHhc-c
Confidence            8887643    22333333333     4444432100   0001267899999999999  99887543    35566 7


Q ss_pred             CCCccEEEccCCccCcccccc-hhhhhcCCCCCceEEecCCcCCCC
Q 038163          148 MSSLKYLSLSYYTLGINSSET-LNQGLCSLVHLQELYIASNDLRGS  192 (207)
Q Consensus       148 ~~~L~~L~l~~n~~~~~~~i~-~~~~~~~~~~L~~L~l~~n~l~~~  192 (207)
                      |+.|+.+++++|.+...|.+. ....-...++|+.|.+.+|.+..+
T Consensus       240 ~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~d  285 (382)
T KOG1909|consen  240 WPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRD  285 (382)
T ss_pred             cchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHH
Confidence            889999999999998544431 110122367889999999988743

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.64  E-value=1.4e-08  Score=61.16  Aligned_cols=61  Identities=28%  Similarity=0.317  Sum_probs=46.0

Q ss_pred             CccceecccccccccCchhHHHHHhcCCCccEEEccCCccCcccccchhhhhcCCCCCceEEecCCcC
Q 038163          122 KSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSLSYYTLGINSSETLNQGLCSLVHLQELYIASNDL  189 (207)
Q Consensus       122 ~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L~l~~n~~~~~~~i~~~~~~~~~~~L~~L~l~~n~l  189 (207)
                      ++|++|+++  +|.++...+..+. .+++|+.|++++|.++   .+ +...|.++++|+.|++++|++
T Consensus         1 p~L~~L~l~--~n~l~~i~~~~f~-~l~~L~~L~l~~N~l~---~i-~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLS--NNKLTEIPPDSFS-NLPNLETLDLSNNNLT---SI-PPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEET--SSTESEECTTTTT-TGTTESEEEETSSSES---EE-ETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECC--CCCCCccCHHHHc-CCCCCCEeEccCCccC---cc-CHHHHcCCCCCCEEeCcCCcC
Confidence            357788888  8888754455666 7888888888888887   66 444788888888888888864

...

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.60  E-value=2.9e-08  Score=81.91  Aligned_cols=139  Identities=27%  Similarity=0.333  Sum_probs=101.6

Q ss_pred             CCCCccCceecCccccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcC
Q 038163            1 MSFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLD   80 (207)
Q Consensus         1 l~~n~~~~~~p~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~   80 (207)
                      +++|.+. .+|. .+..+++|+.|++++|++   ..+|......+.|+.|++++|.++.. |   ........|+++.++
T Consensus       147 l~~N~i~-~l~~-~~~~l~~L~~L~l~~N~l---~~l~~~~~~~~~L~~L~ls~N~i~~l-~---~~~~~~~~L~~l~~~  217 (394)
T COG4886         147 LSDNKIE-SLPS-PLRNLPNLKNLDLSFNDL---SDLPKLLSNLSNLNNLDLSGNKISDL-P---PEIELLSALEELDLS  217 (394)
T ss_pred             ccccchh-hhhh-hhhccccccccccCCchh---hhhhhhhhhhhhhhheeccCCccccC-c---hhhhhhhhhhhhhhc
Confidence            3566666 4542 268899999999999999   66787777899999999999999965 4   344556669999999


Q ss_pred             CCCCChHHHHhhcccccc-----cCCcccceeccccccccCCCCCCCccceecccccccccCchhHHHHHhcCCCccEEE
Q 038163           81 DSPLHISLLQSIASIFPL-----LKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLS  155 (207)
Q Consensus        81 ~~~~~~~~~~~l~~l~~L-----~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L~  155 (207)
                      +|.+. ..+..+..+..+     ..|.+.. ++.       .++.+..++.|+++  +|.++....  +. ....++.++
T Consensus       218 ~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~-~~~-------~~~~l~~l~~L~~s--~n~i~~i~~--~~-~~~~l~~L~  283 (394)
T COG4886         218 NNSII-ELLSSLSNLKNLSGLELSNNKLED-LPE-------SIGNLSNLETLDLS--NNQISSISS--LG-SLTNLRELD  283 (394)
T ss_pred             CCcce-ecchhhhhcccccccccCCceeee-ccc-------hhccccccceeccc--ccccccccc--cc-ccCccCEEe
Confidence            99532 223333333333     4444432 133       66778889999999  999984333  66 788999999


Q ss_pred             ccCCccC
Q 038163          156 LSYYTLG  162 (207)
Q Consensus       156 l~~n~~~  162 (207)
                      ++++.+.
T Consensus       284 ~s~n~~~  290 (394)
T COG4886         284 LSGNSLS  290 (394)
T ss_pred             ccCcccc
Confidence            9999998

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.51  E-value=1.9e-08  Score=78.24  Aligned_cols=118  Identities=20%  Similarity=0.231  Sum_probs=66.6

Q ss_pred             CCCEEEcCCCcCCcccccchhcccCCCCccEEEcCCCCCChHHHHhhcccccccCCcccceeccccccccCCCCCCCccc
Q 038163           46 SLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDDSPLHISLLQSIASIFPLLKNLSMIGCEVNGVIRGQDFPHSKSLE  125 (207)
Q Consensus        46 ~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~n~~~~~~~~~~~~~~~~~~~~~~L~  125 (207)
                      .|+++|+++|.|+-..    ++..-.+.++.|++++|.+.                   .  ..       .++++++|+
T Consensus       285 ~LtelDLS~N~I~~iD----ESvKL~Pkir~L~lS~N~i~-------------------~--v~-------nLa~L~~L~  332 (490)
T KOG1259|consen  285 ELTELDLSGNLITQID----ESVKLAPKLRRLILSQNRIR-------------------T--VQ-------NLAELPQLQ  332 (490)
T ss_pred             hhhhccccccchhhhh----hhhhhccceeEEecccccee-------------------e--eh-------hhhhcccce
Confidence            4555666666555332    23344455666666666654                   1  11       556667777


Q ss_pred             eecccccccccCchhHHHHHhcCCCccEEEccCCccCcccccchhhhhcCCCCCceEEecCCcCCCC-ccccccCCCCCc
Q 038163          126 HLDMEFMRIALNTSFLQIISESMSSLKYLSLSYYTLGINSSETLNQGLCSLVHLQELYIASNDLRGS-LPWCMANMTSLR  204 (207)
Q Consensus       126 ~L~l~~~~n~~~~~~~~~l~~~~~~L~~L~l~~n~~~~~~~i~~~~~~~~~~~L~~L~l~~n~l~~~-~p~~~~~l~~L~  204 (207)
                      .||++  +|.++ ....+=. .+.+++.|.++.|.+-   .+  + .++++-+|..||+++|++..- --..++++|.|+
T Consensus       333 ~LDLS--~N~Ls-~~~Gwh~-KLGNIKtL~La~N~iE---~L--S-GL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE  402 (490)
T KOG1259|consen  333 LLDLS--GNLLA-ECVGWHL-KLGNIKTLKLAQNKIE---TL--S-GLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLE  402 (490)
T ss_pred             Eeecc--cchhH-hhhhhHh-hhcCEeeeehhhhhHh---hh--h-hhHhhhhheeccccccchhhHHHhcccccccHHH
Confidence            77777  77665 2223322 5667777777777664   43  2 566667777777777776531 113455555544


Q ss_pred             c
Q 038163          205 I  205 (207)
Q Consensus       205 ~  205 (207)
                      +
T Consensus       403 ~  403 (490)
T KOG1259|consen  403 T  403 (490)
T ss_pred             H
Confidence            3

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.49  E-value=9e-09  Score=79.73  Aligned_cols=158  Identities=25%  Similarity=0.212  Sum_probs=81.3

Q ss_pred             cCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCC-cCCcccccchhcccCCCCccEEEcCCCCCChHHHH----
Q 038163           16 NGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSN-NFTETVTITTQELHNFTNMEYLKLDDSPLHISLLQ----   90 (207)
Q Consensus        16 ~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n-~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~----   90 (207)
                      ..+++|+.|++.++.+  .+.+...+.+-.+|+.|+++.+ .++.....  -.+..++.|+.|++++|....+...    
T Consensus       207 s~C~kLk~lSlEg~~L--dD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~--ll~~scs~L~~LNlsWc~l~~~~Vtv~V~  282 (419)
T KOG2120|consen  207 SQCSKLKNLSLEGLRL--DDPIVNTIAKNSNLVRLNLSMCSGFTENALQ--LLLSSCSRLDELNLSWCFLFTEKVTVAVA  282 (419)
T ss_pred             HHHHhhhhcccccccc--CcHHHHHHhccccceeeccccccccchhHHH--HHHHhhhhHhhcCchHhhccchhhhHHHh
Confidence            4455666666666666  4555556666666666666655 23321110  1234566677777777665433211    


Q ss_pred             hh-cccccc--c---CCcccceeccccccccCCCCCCCccceeccccccc-ccCchhHHHHHhcCCCccEEEccCCccCc
Q 038163           91 SI-ASIFPL--L---KNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRI-ALNTSFLQIISESMSSLKYLSLSYYTLGI  163 (207)
Q Consensus        91 ~l-~~l~~L--~---~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n-~~~~~~~~~l~~~~~~L~~L~l~~n~~~~  163 (207)
                      ++ .++..|  +   .|....-+..       -..+++++.+||++  +| .++......+. .++.|++|.++.|-...
T Consensus       283 hise~l~~LNlsG~rrnl~~sh~~t-------L~~rcp~l~~LDLS--D~v~l~~~~~~~~~-kf~~L~~lSlsRCY~i~  352 (419)
T KOG2120|consen  283 HISETLTQLNLSGYRRNLQKSHLST-------LVRRCPNLVHLDLS--DSVMLKNDCFQEFF-KFNYLQHLSLSRCYDII  352 (419)
T ss_pred             hhchhhhhhhhhhhHhhhhhhHHHH-------HHHhCCceeeeccc--cccccCchHHHHHH-hcchheeeehhhhcCCC
Confidence            11 123333  0   0110001111       12357777777777  55 45544455555 67777777777664321


Q ss_pred             ccccchhhhhcCCCCCceEEecCCcCC
Q 038163          164 NSSETLNQGLCSLVHLQELYIASNDLR  190 (207)
Q Consensus       164 ~~~i~~~~~~~~~~~L~~L~l~~n~l~  190 (207)
                      ...  .. .+...++|.+|++.++--.
T Consensus       353 p~~--~~-~l~s~psl~yLdv~g~vsd  376 (419)
T KOG2120|consen  353 PET--LL-ELNSKPSLVYLDVFGCVSD  376 (419)
T ss_pred             hHH--ee-eeccCcceEEEEeccccCc
Confidence            111  11 3555677777777776544

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.47  E-value=1.2e-07  Score=74.70  Aligned_cols=37  Identities=30%  Similarity=0.451  Sum_probs=19.8

Q ss_pred             cCCCCCcEEecCCCcccCCCc----chhhhcCCCCCCEEEcCC
Q 038163           16 NGLRKLKSLDLSGVGVRDGSK----LLQSIGSFSSLNSLYLSS   54 (207)
Q Consensus        16 ~~l~~L~~L~ls~n~i~~~~~----~~~~~~~l~~L~~L~l~~   54 (207)
                      ..+..++++++|+|.+  ...    +.+.+...+.|+.-+++.
T Consensus        27 ~~~~s~~~l~lsgnt~--G~EAa~~i~~~L~~~~~L~~v~~sd   67 (382)
T KOG1909|consen   27 EPMDSLTKLDLSGNTF--GTEAARAIAKVLASKKELREVNLSD   67 (382)
T ss_pred             cccCceEEEeccCCch--hHHHHHHHHHHHhhcccceeeehHh
Confidence            4566677777777776  322    333334444555555443

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.34  E-value=1e-08  Score=87.77  Aligned_cols=58  Identities=28%  Similarity=0.347  Sum_probs=47.1

Q ss_pred             CCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcCCCCCC
Q 038163           20 KLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDDSPLH   85 (207)
Q Consensus        20 ~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~   85 (207)
                      +|.+.+.++|.+   ..+..++.-++.++.|||+.|.++.+     +.+..+++|++|||++|.+.
T Consensus       165 ~L~~a~fsyN~L---~~mD~SLqll~ale~LnLshNk~~~v-----~~Lr~l~~LkhLDlsyN~L~  222 (1096)
T KOG1859|consen  165 KLATASFSYNRL---VLMDESLQLLPALESLNLSHNKFTKV-----DNLRRLPKLKHLDLSYNCLR  222 (1096)
T ss_pred             hHhhhhcchhhH---HhHHHHHHHHHHhhhhccchhhhhhh-----HHHHhcccccccccccchhc
Confidence            355667888888   56777777888999999999988865     57788899999999999876

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.33  E-value=2e-07  Score=83.54  Aligned_cols=71  Identities=31%  Similarity=0.369  Sum_probs=55.1

Q ss_pred             eecCccccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcCCCCCC
Q 038163            9 LVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDDSPLH   85 (207)
Q Consensus         9 ~~p~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~   85 (207)
                      .++..+|..++.|++||+++|.-  ...+|..++.+-+|++|++++..+. .+|   ..+.++..|++|++..+...
T Consensus       561 ~is~~ff~~m~~LrVLDLs~~~~--l~~LP~~I~~Li~LryL~L~~t~I~-~LP---~~l~~Lk~L~~Lnl~~~~~l  631 (889)
T KOG4658|consen  561 EISGEFFRSLPLLRVLDLSGNSS--LSKLPSSIGELVHLRYLDLSDTGIS-HLP---SGLGNLKKLIYLNLEVTGRL  631 (889)
T ss_pred             hcCHHHHhhCcceEEEECCCCCc--cCcCChHHhhhhhhhcccccCCCcc-ccc---hHHHHHHhhheecccccccc
Confidence            45666677888888888887765  5778888888888888888888877 456   67788888888888776643

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.29  E-value=3.3e-07  Score=76.23  Aligned_cols=63  Identities=27%  Similarity=0.341  Sum_probs=40.3

Q ss_pred             ccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcCCCCCC
Q 038163           15 YNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDDSPLH   85 (207)
Q Consensus        15 ~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~   85 (207)
                      +..+++++.|++..|.|   ..+...+..+++|++|++++|.|+...     .+..+..|+.|++++|.+.
T Consensus        91 l~~~~~l~~l~l~~n~i---~~i~~~l~~~~~L~~L~ls~N~I~~i~-----~l~~l~~L~~L~l~~N~i~  153 (414)
T KOG0531|consen   91 LSKLKSLEALDLYDNKI---EKIENLLSSLVNLQVLDLSFNKITKLE-----GLSTLTLLKELNLSGNLIS  153 (414)
T ss_pred             cccccceeeeeccccch---hhcccchhhhhcchheecccccccccc-----chhhccchhhheeccCcch
Confidence            35566777777777777   333333556677777777777777653     3455555777777777765

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.27  E-value=2e-06  Score=47.96  Aligned_cols=39  Identities=28%  Similarity=0.503  Sum_probs=28.0

Q ss_pred             CCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcc
Q 038163           19 RKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTET   60 (207)
Q Consensus        19 ~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~   60 (207)
                      ++|++|++++|.|   ..+|..+.++++|+.|++++|.+++.
T Consensus         1 ~~L~~L~l~~N~i---~~l~~~l~~l~~L~~L~l~~N~i~~i   39 (44)
T PF12799_consen    1 KNLEELDLSNNQI---TDLPPELSNLPNLETLNLSNNPISDI   39 (44)
T ss_dssp             TT-SEEEETSSS----SSHGGHGTTCTTSSEEEETSSCCSBE
T ss_pred             CcceEEEccCCCC---cccCchHhCCCCCCEEEecCCCCCCC
Confidence            3677888888888   45676678888888888888877754

...

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.23  E-value=8.9e-07  Score=68.89  Aligned_cols=181  Identities=21%  Similarity=0.225  Sum_probs=102.9

Q ss_pred             CCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcc-cCCCCccEEEcCCCCCChHHHHh-hcc
Q 038163           17 GLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQEL-HNFTNMEYLKLDDSPLHISLLQS-IAS   94 (207)
Q Consensus        17 ~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~~-l~~   94 (207)
                      ....++++|+.+|.|+++.++.....++|.|++|+++.|.++..+-    .+ ....+|++|-|.+..+......+ +..
T Consensus        69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~----~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~  144 (418)
T KOG2982|consen   69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIK----SLPLPLKNLRVLVLNGTGLSWTQSTSSLDD  144 (418)
T ss_pred             HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccc----cCcccccceEEEEEcCCCCChhhhhhhhhc
Confidence            4566778899999998888888888889999999999998875443    44 35677888888888776532221 222


Q ss_pred             cc---cc--cCCcccce------ecccc-------cccc--------CCCC-CCCccceecccccccccCchhH-HHHHh
Q 038163           95 IF---PL--LKNLSMIG------CEVNG-------VIRG--------QDFP-HSKSLEHLDMEFMRIALNTSFL-QIISE  146 (207)
Q Consensus        95 l~---~L--~~n~~~~~------~~~~~-------~~~~--------~~~~-~~~~L~~L~l~~~~n~~~~~~~-~~l~~  146 (207)
                      ++   .+  +.|.....      ...+.       +...        ..+. ..+++..+-+.  .|++..... +.. +
T Consensus       145 lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~--e~PlK~~s~ek~s-e  221 (418)
T KOG2982|consen  145 LPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVC--EGPLKTESSEKGS-E  221 (418)
T ss_pred             chhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeee--cCcccchhhcccC-C
Confidence            22   22  33322110      00000       0000        0000 12333333333  333321111 112 2


Q ss_pred             cCCCccEEEccCCccCcccccchhhhhcCCCCCceEEecCCcCCCCccc------cccCCCCCccCC
Q 038163          147 SMSSLKYLSLSYYTLGINSSETLNQGLCSLVHLQELYIASNDLRGSLPW------CMANMTSLRILD  207 (207)
Q Consensus       147 ~~~~L~~L~l~~n~~~~~~~i~~~~~~~~~~~L~~L~l~~n~l~~~~p~------~~~~l~~L~~l~  207 (207)
                      .++.+..|+++.+++..+..+   .++.+++.|..|.+..+.+.+.+..      .+++++++++|+
T Consensus       222 ~~p~~~~LnL~~~~idswasv---D~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLN  285 (418)
T KOG2982|consen  222 PFPSLSCLNLGANNIDSWASV---DALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLN  285 (418)
T ss_pred             CCCcchhhhhcccccccHHHH---HHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEec
Confidence            456666777777777644444   3688888999999988887643321      246677776654

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.19  E-value=2.8e-07  Score=71.67  Aligned_cols=171  Identities=22%  Similarity=0.210  Sum_probs=111.0

Q ss_pred             CCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcCCCC-CChHH----HHhhcc
Q 038163           20 KLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDDSP-LHISL----LQSIAS   94 (207)
Q Consensus        20 ~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~----~~~l~~   94 (207)
                      .++.||+|...|. ...+...+..+.+|+.|.+.++.+.+.+.   ..+.+-..|+.|+++.+. ++...    ......
T Consensus       186 Rlq~lDLS~s~it-~stl~~iLs~C~kLk~lSlEg~~LdD~I~---~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~  261 (419)
T KOG2120|consen  186 RLQHLDLSNSVIT-VSTLHGILSQCSKLKNLSLEGLRLDDPIV---NTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSR  261 (419)
T ss_pred             hhHHhhcchhhee-HHHHHHHHHHHHhhhhccccccccCcHHH---HHHhccccceeeccccccccchhHHHHHHHhhhh
Confidence            3778899988883 24466677888999999999998887766   678888889999998875 44322    222333


Q ss_pred             cccc--cCCcccceeccccccccCCCCCC-Cccceecccccccc--cCchhHHHHHhcCCCccEEEccCCccCcccccch
Q 038163           95 IFPL--LKNLSMIGCEVNGVIRGQDFPHS-KSLEHLDMEFMRIA--LNTSFLQIISESMSSLKYLSLSYYTLGINSSETL  169 (207)
Q Consensus        95 l~~L--~~n~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~n~--~~~~~~~~l~~~~~~L~~L~l~~n~~~~~~~i~~  169 (207)
                      +.+|  +.+.........      ...+. ..|..|+++  |+.  +.....+.+...+|+|.+|+++.|..-.+ .. .
T Consensus       262 L~~LNlsWc~l~~~~Vtv------~V~hise~l~~LNls--G~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~-~~-~  331 (419)
T KOG2120|consen  262 LDELNLSWCFLFTEKVTV------AVAHISETLTQLNLS--GYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKN-DC-F  331 (419)
T ss_pred             HhhcCchHhhccchhhhH------HHhhhchhhhhhhhh--hhHhhhhhhHHHHHHHhCCceeeeccccccccCc-hH-H
Confidence            3333  222221111110      22232 478889999  653  33344445444899999999998754422 22 2


Q ss_pred             hhhhcCCCCCceEEecCCcCCCCcccc---ccCCCCCccCC
Q 038163          170 NQGLCSLVHLQELYIASNDLRGSLPWC---MANMTSLRILD  207 (207)
Q Consensus       170 ~~~~~~~~~L~~L~l~~n~l~~~~p~~---~~~l~~L~~l~  207 (207)
                       .++.+++.|++|.+++|...  +|..   +...|+|..||
T Consensus       332 -~~~~kf~~L~~lSlsRCY~i--~p~~~~~l~s~psl~yLd  369 (419)
T KOG2120|consen  332 -QEFFKFNYLQHLSLSRCYDI--IPETLLELNSKPSLVYLD  369 (419)
T ss_pred             -HHHHhcchheeeehhhhcCC--ChHHeeeeccCcceEEEE
Confidence             37888999999999999864  4543   45667766654

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.16  E-value=7.3e-07  Score=69.35  Aligned_cols=162  Identities=17%  Similarity=0.120  Sum_probs=99.0

Q ss_pred             ccccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcCCCCCCh-----H
Q 038163           13 QGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDDSPLHI-----S   87 (207)
Q Consensus        13 ~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-----~   87 (207)
                      .++.+++.+++|+++.|+++  ..+...-..+.+|+.|.|.+..+......  ..+..++.++.|.++.|....     .
T Consensus        91 ~ile~lP~l~~LNls~N~L~--s~I~~lp~p~~nl~~lVLNgT~L~w~~~~--s~l~~lP~vtelHmS~N~~rq~n~Dd~  166 (418)
T KOG2982|consen   91 AILEQLPALTTLNLSCNSLS--SDIKSLPLPLKNLRVLVLNGTGLSWTQST--SSLDDLPKVTELHMSDNSLRQLNLDDN  166 (418)
T ss_pred             HHHhcCccceEeeccCCcCC--CccccCcccccceEEEEEcCCCCChhhhh--hhhhcchhhhhhhhccchhhhhccccc
Confidence            34678999999999999983  22221113567899999999887754331  456678888999888884321     0


Q ss_pred             H----HHhhcccccc--------cCCcccceecccc-----------ccccCCCCCCCccceecccccccccC-chhHHH
Q 038163           88 L----LQSIASIFPL--------LKNLSMIGCEVNG-----------VIRGQDFPHSKSLEHLDMEFMRIALN-TSFLQI  143 (207)
Q Consensus        88 ~----~~~l~~l~~L--------~~n~~~~~~~~~~-----------~~~~~~~~~~~~L~~L~l~~~~n~~~-~~~~~~  143 (207)
                      -    ...+..++.+        .-|++...+|..-           ...-+.+..++.+..|+++  .+++. +.....
T Consensus       167 c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~--~~~idswasvD~  244 (418)
T KOG2982|consen  167 CIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLG--ANNIDSWASVDA  244 (418)
T ss_pred             cccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhc--ccccccHHHHHH
Confidence            0    0011111111        2233332233210           1111245567778889999  88885 344567


Q ss_pred             HHhcCCCccEEEccCCccCcccccchh-----hhhcCCCCCceEEe
Q 038163          144 ISESMSSLKYLSLSYYTLGINSSETLN-----QGLCSLVHLQELYI  184 (207)
Q Consensus       144 l~~~~~~L~~L~l~~n~~~~~~~i~~~-----~~~~~~~~L~~L~l  184 (207)
                      +. .++.|..|.++++.+.  +.+ ..     -.++.+++++.|+=
T Consensus       245 Ln-~f~~l~dlRv~~~Pl~--d~l-~~~err~llIaRL~~v~vLNG  286 (418)
T KOG2982|consen  245 LN-GFPQLVDLRVSENPLS--DPL-RGGERRFLLIARLTKVQVLNG  286 (418)
T ss_pred             Hc-CCchhheeeccCCccc--ccc-cCCcceEEEEeeccceEEecC
Confidence            77 8999999999999887  433 11     03556777777653

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.06  E-value=3.6e-06  Score=75.73  Aligned_cols=124  Identities=20%  Similarity=0.203  Sum_probs=77.0

Q ss_pred             CCCCCcEEecCCCc--ccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcCCCCCChHHHHhhcc
Q 038163           17 GLRKLKSLDLSGVG--VRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDDSPLHISLLQSIAS   94 (207)
Q Consensus        17 ~l~~L~~L~ls~n~--i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~   94 (207)
                      ..++|++|-+..|.  +  .....+.|..++.|+.||+++|.--..+|   ..++.+.+||+|+++++.+. .+|.++.+
T Consensus       543 ~~~~L~tLll~~n~~~l--~~is~~ff~~m~~LrVLDLs~~~~l~~LP---~~I~~Li~LryL~L~~t~I~-~LP~~l~~  616 (889)
T KOG4658|consen  543 ENPKLRTLLLQRNSDWL--LEISGEFFRSLPLLRVLDLSGNSSLSKLP---SSIGELVHLRYLDLSDTGIS-HLPSGLGN  616 (889)
T ss_pred             CCCccceEEEeecchhh--hhcCHHHHhhCcceEEEECCCCCccCcCC---hHHhhhhhhhcccccCCCcc-ccchHHHH
Confidence            34467787777775  4  23333457778999999999887767788   78888899999999998887 66777766


Q ss_pred             cccc-----cCCcccceeccccccccCCCCCCCccceecccccccc--cCchhHHHHHhcCCCccEEEc
Q 038163           95 IFPL-----LKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIA--LNTSFLQIISESMSSLKYLSL  156 (207)
Q Consensus        95 l~~L-----~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~--~~~~~~~~l~~~~~~L~~L~l  156 (207)
                      |..|     ..+......+.       ....+.+|++|.+.  .-.  .+......+. .+..|+.+..
T Consensus       617 Lk~L~~Lnl~~~~~l~~~~~-------i~~~L~~Lr~L~l~--~s~~~~~~~~l~el~-~Le~L~~ls~  675 (889)
T KOG4658|consen  617 LKKLIYLNLEVTGRLESIPG-------ILLELQSLRVLRLP--RSALSNDKLLLKELE-NLEHLENLSI  675 (889)
T ss_pred             HHhhheeccccccccccccc-------hhhhcccccEEEee--ccccccchhhHHhhh-cccchhhhee
Confidence            6665     11111111222       44457777777776  433  2222233343 4445555444

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.06  E-value=3.5e-06  Score=73.95  Aligned_cols=64  Identities=27%  Similarity=0.412  Sum_probs=41.4

Q ss_pred             CCCcEEecCCCcccCCCcchhhhcC-CCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcCCCCCC
Q 038163           19 RKLKSLDLSGVGVRDGSKLLQSIGS-FSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDDSPLH   85 (207)
Q Consensus        19 ~~L~~L~ls~n~i~~~~~~~~~~~~-l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~   85 (207)
                      .+|+.|++++...- ...-|..++. +|.|+.|.+++-.+....-.  +-..++++|..||+|++.++
T Consensus       122 ~nL~~LdI~G~~~~-s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~--~lc~sFpNL~sLDIS~TnI~  186 (699)
T KOG3665|consen  122 QNLQHLDISGSELF-SNGWPKKIGTMLPSLRSLVISGRQFDNDDFS--QLCASFPNLRSLDISGTNIS  186 (699)
T ss_pred             HhhhhcCccccchh-hccHHHHHhhhCcccceEEecCceecchhHH--HHhhccCccceeecCCCCcc
Confidence            45777888776652 1233334443 68888888887766543210  34457888888888888876

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.01  E-value=7.9e-07  Score=73.96  Aligned_cols=149  Identities=24%  Similarity=0.231  Sum_probs=103.1

Q ss_pred             CCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcCCCCCCh-HHHHhhccc
Q 038163           17 GLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDDSPLHI-SLLQSIASI   95 (207)
Q Consensus        17 ~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~l~~l   95 (207)
                      .+..++.+++..|.+   ..+-..+..+.+|..|++.+|.+.....    .+..+++|++|++++|.|.. .....+..+
T Consensus        70 ~l~~l~~l~l~~n~i---~~~~~~l~~~~~l~~l~l~~n~i~~i~~----~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L  142 (414)
T KOG0531|consen   70 SLTSLKELNLRQNLI---AKILNHLSKLKSLEALDLYDNKIEKIEN----LLSSLVNLQVLDLSFNKITKLEGLSTLTLL  142 (414)
T ss_pred             HhHhHHhhccchhhh---hhhhcccccccceeeeeccccchhhccc----chhhhhcchheeccccccccccchhhccch
Confidence            356666777888888   3344457788999999999999987532    27889999999999999873 234444445


Q ss_pred             ccc--cCCcccceeccccccccCCCCCCCccceecccccccccCchhHHHHHhcCCCccEEEccCCccCcccccchhhhh
Q 038163           96 FPL--LKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSLSYYTLGINSSETLNQGL  173 (207)
Q Consensus        96 ~~L--~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L~l~~n~~~~~~~i~~~~~~  173 (207)
                      ..|  .+|.+... .        .+..+..|+.++++  +|.+......... .+.+++.+.++.|.+.   .+ .  .+
T Consensus       143 ~~L~l~~N~i~~~-~--------~~~~l~~L~~l~l~--~n~i~~ie~~~~~-~~~~l~~l~l~~n~i~---~i-~--~~  204 (414)
T KOG0531|consen  143 KELNLSGNLISDI-S--------GLESLKSLKLLDLS--YNRIVDIENDELS-ELISLEELDLGGNSIR---EI-E--GL  204 (414)
T ss_pred             hhheeccCcchhc-c--------CCccchhhhcccCC--cchhhhhhhhhhh-hccchHHHhccCCchh---cc-c--ch
Confidence            555  66666542 1        56667888888888  8887643331134 6778888888888887   54 2  34


Q ss_pred             cCCCCCceEEecCCcCC
Q 038163          174 CSLVHLQELYIASNDLR  190 (207)
Q Consensus       174 ~~~~~L~~L~l~~n~l~  190 (207)
                      ..+..+..+++..|++.
T Consensus       205 ~~~~~l~~~~l~~n~i~  221 (414)
T KOG0531|consen  205 DLLKKLVLLSLLDNKIS  221 (414)
T ss_pred             HHHHHHHHhhcccccce
Confidence            44555555677777765

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.94  E-value=1e-06  Score=61.06  Aligned_cols=111  Identities=18%  Similarity=0.209  Sum_probs=71.9

Q ss_pred             CCCcEEecCCCcccCCCcchhhh---cCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcCCCCCChHHHHhhccc
Q 038163           19 RKLKSLDLSGVGVRDGSKLLQSI---GSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDDSPLHISLLQSIASI   95 (207)
Q Consensus        19 ~~L~~L~ls~n~i~~~~~~~~~~---~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l   95 (207)
                      ..+..++|+.|.+   ..+++.+   .....|+..++++|.+....+   ....+++.+.++++++|.++          
T Consensus        27 kE~h~ldLssc~l---m~i~davy~l~~~~el~~i~ls~N~fk~fp~---kft~kf~t~t~lNl~~neis----------   90 (177)
T KOG4579|consen   27 KELHFLDLSSCQL---MYIADAVYMLSKGYELTKISLSDNGFKKFPK---KFTIKFPTATTLNLANNEIS----------   90 (177)
T ss_pred             HHhhhcccccchh---hHHHHHHHHHhCCceEEEEecccchhhhCCH---HHhhccchhhhhhcchhhhh----------
Confidence            3455677777776   4444433   344556666778887776444   33345667777777777776          


Q ss_pred             ccccCCcccceeccccccccCCCCCCCccceecccccccccCchhHHHHHhcCCCccEEEccCCccCcccccchh
Q 038163           96 FPLLKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSLSYYTLGINSSETLN  170 (207)
Q Consensus        96 ~~L~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L~l~~n~~~~~~~i~~~  170 (207)
                                .+|.       .+..++.|+.|++.  .|++. ..|+.+. .+.++..|+..+|...   +| +.
T Consensus        91 ----------dvPe-------E~Aam~aLr~lNl~--~N~l~-~~p~vi~-~L~~l~~Lds~~na~~---ei-d~  140 (177)
T KOG4579|consen   91 ----------DVPE-------ELAAMPALRSLNLR--FNPLN-AEPRVIA-PLIKLDMLDSPENARA---EI-DV  140 (177)
T ss_pred             ----------hchH-------HHhhhHHhhhcccc--cCccc-cchHHHH-HHHhHHHhcCCCCccc---cC-cH
Confidence                      2344       56667778888888  88776 5566666 5677777777777776   66 55

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.94  E-value=1.8e-05  Score=44.07  Aligned_cols=38  Identities=24%  Similarity=0.300  Sum_probs=29.4

Q ss_pred             CCccEEEccCCccCcccccchhhhhcCCCCCceEEecCCcCCC
Q 038163          149 SSLKYLSLSYYTLGINSSETLNQGLCSLVHLQELYIASNDLRG  191 (207)
Q Consensus       149 ~~L~~L~l~~n~~~~~~~i~~~~~~~~~~~L~~L~l~~n~l~~  191 (207)
                      ++|++|++++|.++   ++ +. .++.+++|+.|++++|++.+
T Consensus         1 ~~L~~L~l~~N~i~---~l-~~-~l~~l~~L~~L~l~~N~i~~   38 (44)
T PF12799_consen    1 KNLEELDLSNNQIT---DL-PP-ELSNLPNLETLNLSNNPISD   38 (44)
T ss_dssp             TT-SEEEETSSS-S---SH-GG-HGTTCTTSSEEEETSSCCSB
T ss_pred             CcceEEEccCCCCc---cc-Cc-hHhCCCCCCEEEecCCCCCC
Confidence            46888888888887   77 65 68888888888888888873

...

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.87  E-value=1.8e-05  Score=61.07  Aligned_cols=16  Identities=31%  Similarity=0.474  Sum_probs=11.1

Q ss_pred             cCCCCCcEEecCCCcc
Q 038163           16 NGLRKLKSLDLSGVGV   31 (207)
Q Consensus        16 ~~l~~L~~L~ls~n~i   31 (207)
                      ..+..++++++|+|.|
T Consensus        27 ~~~d~~~evdLSGNti   42 (388)
T COG5238          27 EMMDELVEVDLSGNTI   42 (388)
T ss_pred             HhhcceeEEeccCCcc
Confidence            4466677777777776

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.70  E-value=8.2e-06  Score=70.52  Aligned_cols=79  Identities=25%  Similarity=0.291  Sum_probs=53.0

Q ss_pred             CCCCCCccceecccccccccCchhHHHHHhcCCCccEEEccCCccCcccccchhhhhcCCCCCceEEecCCcCCCCcccc
Q 038163          117 DFPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSLSYYTLGINSSETLNQGLCSLVHLQELYIASNDLRGSLPWC  196 (207)
Q Consensus       117 ~~~~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L~l~~n~~~~~~~i~~~~~~~~~~~L~~L~l~~n~l~~~~p~~  196 (207)
                      .+.-++.+++|+|+  .|+++.  ...+. .++.|++|++++|.+.   .+ |.....+++ |+.|.+++|.+...  ..
T Consensus       182 SLqll~ale~LnLs--hNk~~~--v~~Lr-~l~~LkhLDlsyN~L~---~v-p~l~~~gc~-L~~L~lrnN~l~tL--~g  249 (1096)
T KOG1859|consen  182 SLQLLPALESLNLS--HNKFTK--VDNLR-RLPKLKHLDLSYNCLR---HV-PQLSMVGCK-LQLLNLRNNALTTL--RG  249 (1096)
T ss_pred             HHHHHHHhhhhccc--hhhhhh--hHHHH-hcccccccccccchhc---cc-cccchhhhh-heeeeecccHHHhh--hh
Confidence            45556788888888  888874  34667 7888888888888887   66 542233344 77777777777632  33


Q ss_pred             ccCCCCCccCC
Q 038163          197 MANMTSLRILD  207 (207)
Q Consensus       197 ~~~l~~L~~l~  207 (207)
                      ++++++|+.||
T Consensus       250 ie~LksL~~LD  260 (1096)
T KOG1859|consen  250 IENLKSLYGLD  260 (1096)
T ss_pred             HHhhhhhhccc
Confidence            55666666554

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.66  E-value=4.5e-06  Score=57.97  Aligned_cols=59  Identities=19%  Similarity=0.308  Sum_probs=28.9

Q ss_pred             CccceecccccccccCchhHHHHHhcCCCccEEEccCCccCcccccchhhhhcCCCCCceEEecCCcC
Q 038163          122 KSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSLSYYTLGINSSETLNQGLCSLVHLQELYIASNDL  189 (207)
Q Consensus       122 ~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L~l~~n~~~~~~~i~~~~~~~~~~~L~~L~l~~n~l  189 (207)
                      +.++.++++  .|.++ .+|..+. .|+.|+.|+++.|.+.   .. |. .+..+.++-.|+..+|.+
T Consensus        77 ~t~t~lNl~--~neis-dvPeE~A-am~aLr~lNl~~N~l~---~~-p~-vi~~L~~l~~Lds~~na~  135 (177)
T KOG4579|consen   77 PTATTLNLA--NNEIS-DVPEELA-AMPALRSLNLRFNPLN---AE-PR-VIAPLIKLDMLDSPENAR  135 (177)
T ss_pred             chhhhhhcc--hhhhh-hchHHHh-hhHHhhhcccccCccc---cc-hH-HHHHHHhHHHhcCCCCcc
Confidence            345555555  55554 3444444 5555555555555554   33 33 333344444455444443

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.51  E-value=8.3e-05  Score=65.51  Aligned_cols=130  Identities=19%  Similarity=0.181  Sum_probs=73.7

Q ss_pred             cCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcCCCCCCh-HHHHhhcc
Q 038163           16 NGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDDSPLHI-SLLQSIAS   94 (207)
Q Consensus        16 ~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~l~~   94 (207)
                      ..+|.|+.|.+++-.+. ...+.....++++|..||+++.+++..     ..++++++||.|.+.+-.+.. .....+..
T Consensus       145 ~~LPsL~sL~i~~~~~~-~~dF~~lc~sFpNL~sLDIS~TnI~nl-----~GIS~LknLq~L~mrnLe~e~~~~l~~LF~  218 (699)
T KOG3665|consen  145 TMLPSLRSLVISGRQFD-NDDFSQLCASFPNLRSLDISGTNISNL-----SGISRLKNLQVLSMRNLEFESYQDLIDLFN  218 (699)
T ss_pred             hhCcccceEEecCceec-chhHHHHhhccCccceeecCCCCccCc-----HHHhccccHHHHhccCCCCCchhhHHHHhc
Confidence            56788888888887763 233555667788888888888888764     356777788888776666553 22333333


Q ss_pred             cccc-----cCCcccc--eeccccccccCCCCCCCccceecccccccccCchhHHHHHhcCCCccEEEc
Q 038163           95 IFPL-----LKNLSMI--GCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSL  156 (207)
Q Consensus        95 l~~L-----~~n~~~~--~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L~l  156 (207)
                      |+.|     +......  ....   ..++.-..+|.||+||.+  ++.+++...+.+-+..++|+.+.+
T Consensus       219 L~~L~vLDIS~~~~~~~~~ii~---qYlec~~~LpeLrfLDcS--gTdi~~~~le~ll~sH~~L~~i~~  282 (699)
T KOG3665|consen  219 LKKLRVLDISRDKNNDDTKIIE---QYLECGMVLPELRFLDCS--GTDINEEILEELLNSHPNLQQIAA  282 (699)
T ss_pred             ccCCCeeeccccccccchHHHH---HHHHhcccCccccEEecC--CcchhHHHHHHHHHhCccHhhhhh
Confidence            3333     1100000  0000   001122236677777777  666666555554435555555543

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.50  E-value=0.00024  Score=52.55  Aligned_cols=129  Identities=19%  Similarity=0.285  Sum_probs=73.7

Q ss_pred             CcEEecCCCcccCCCcchhhhcC-CCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcCCCCCChHHHHhhccccccc
Q 038163           21 LKSLDLSGVGVRDGSKLLQSIGS-FSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDDSPLHISLLQSIASIFPLL   99 (207)
Q Consensus        21 L~~L~ls~n~i~~~~~~~~~~~~-l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~   99 (207)
                      -+++++.+.++   ..+.. ++. +.....+|++.|.+-..     ..+..++.|.+|.+++|.|+.             
T Consensus        21 e~e~~LR~lki---p~ien-lg~~~d~~d~iDLtdNdl~~l-----~~lp~l~rL~tLll~nNrIt~-------------   78 (233)
T KOG1644|consen   21 ERELDLRGLKI---PVIEN-LGATLDQFDAIDLTDNDLRKL-----DNLPHLPRLHTLLLNNNRITR-------------   78 (233)
T ss_pred             ccccccccccc---cchhh-ccccccccceecccccchhhc-----ccCCCccccceEEecCCccee-------------
Confidence            34567777666   11111 222 23566677777776643     356677778888888887761             


Q ss_pred             CCcccceeccccccccCCCC-CCCccceecccccccccCchh-HHHHHhcCCCccEEEccCCccCcccccchhhhhcCCC
Q 038163          100 KNLSMIGCEVNGVIRGQDFP-HSKSLEHLDMEFMRIALNTSF-LQIISESMSSLKYLSLSYYTLGINSSETLNQGLCSLV  177 (207)
Q Consensus       100 ~n~~~~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~n~~~~~~-~~~l~~~~~~L~~L~l~~n~~~~~~~i~~~~~~~~~~  177 (207)
                             +..       .+. .++.|..|.+.  +|.+.... ...+. .||.|++|.+=+|.+......... .+..++
T Consensus        79 -------I~p-------~L~~~~p~l~~L~Lt--nNsi~~l~dl~pLa-~~p~L~~Ltll~Npv~~k~~YR~y-vl~klp  140 (233)
T KOG1644|consen   79 -------IDP-------DLDTFLPNLKTLILT--NNSIQELGDLDPLA-SCPKLEYLTLLGNPVEHKKNYRLY-VLYKLP  140 (233)
T ss_pred             -------ecc-------chhhhccccceEEec--Ccchhhhhhcchhc-cCCccceeeecCCchhcccCceeE-EEEecC
Confidence                   111       222 23567777777  77664211 23445 677888888777766511111011 355677


Q ss_pred             CCceEEecCCcC
Q 038163          178 HLQELYIASNDL  189 (207)
Q Consensus       178 ~L~~L~l~~n~l  189 (207)
                      +|+.||...-..
T Consensus       141 ~l~~LDF~kVt~  152 (233)
T KOG1644|consen  141 SLRTLDFQKVTR  152 (233)
T ss_pred             cceEeehhhhhH
Confidence            788887765543

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.48  E-value=0.00012  Score=56.57  Aligned_cols=169  Identities=18%  Similarity=0.133  Sum_probs=88.9

Q ss_pred             ccCCCCCcEEecCCCcccCCCcchh----hhcCCCCCCEEEcCCCcCCccccc----c------hhcccCCCCccEEEcC
Q 038163           15 YNGLRKLKSLDLSGVGVRDGSKLLQ----SIGSFSSLNSLYLSSNNFTETVTI----T------TQELHNFTNMEYLKLD   80 (207)
Q Consensus        15 ~~~l~~L~~L~ls~n~i~~~~~~~~----~~~~l~~L~~L~l~~n~~~~~~~~----~------~~~l~~l~~L~~L~l~   80 (207)
                      +.++++++++++|.|-+  ....|+    .++.-+.|.+|.+++|.+.-....    +      ......-+.|++.+..
T Consensus        88 Llkcp~l~~v~LSDNAf--g~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicg  165 (388)
T COG5238          88 LLKCPRLQKVDLSDNAF--GSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICG  165 (388)
T ss_pred             HhcCCcceeeecccccc--CcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEec
Confidence            56677777777777777  444443    345566777777777765422110    0      0111234667777777


Q ss_pred             CCCCChH----HHHhhc---ccccc--cCCcccceeccccccccCCCCCCCccceecccccccccCchhH----HHHHhc
Q 038163           81 DSPLHIS----LLQSIA---SIFPL--LKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFL----QIISES  147 (207)
Q Consensus        81 ~~~~~~~----~~~~l~---~l~~L--~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~~~----~~l~~~  147 (207)
                      .|++...    ....+.   .++.+  .+|.+...-..  -+....+..+.+|+.||+.  .|.++....    ..+. .
T Consensus       166 rNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~--~L~~~gl~y~~~LevLDlq--DNtft~~gS~~La~al~-~  240 (388)
T COG5238         166 RNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVT--MLAFLGLFYSHSLEVLDLQ--DNTFTLEGSRYLADALC-E  240 (388)
T ss_pred             cchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhH--HHHHHHHHHhCcceeeecc--ccchhhhhHHHHHHHhc-c
Confidence            7765421    111111   12211  44444321000  0000145567888888888  887774432    3444 6


Q ss_pred             CCCccEEEccCCccCcccccc-hhhhhc--CCCCCceEEecCCcCCC
Q 038163          148 MSSLKYLSLSYYTLGINSSET-LNQGLC--SLVHLQELYIASNDLRG  191 (207)
Q Consensus       148 ~~~L~~L~l~~n~~~~~~~i~-~~~~~~--~~~~L~~L~l~~n~l~~  191 (207)
                      |+.|++|.+..|.++..|.-. .. .+.  ..++|..|-...|...+
T Consensus       241 W~~lrEL~lnDClls~~G~~~v~~-~f~e~~~p~l~~L~~~Yne~~~  286 (388)
T COG5238         241 WNLLRELRLNDCLLSNEGVKSVLR-RFNEKFVPNLMPLPGDYNERRG  286 (388)
T ss_pred             cchhhhccccchhhccccHHHHHH-HhhhhcCCCccccccchhhhcC
Confidence            777888888888777222110 00 111  24667777777666543

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.30  E-value=0.00015  Score=55.47  Aligned_cols=85  Identities=21%  Similarity=0.212  Sum_probs=49.1

Q ss_pred             CCCCCCccceeccccccc--ccCchhHHHHHhcCCCccEEEccCCccCcccccchhhhhcCCCCCceEEecCCcCCCCcc
Q 038163          117 DFPHSKSLEHLDMEFMRI--ALNTSFLQIISESMSSLKYLSLSYYTLGINSSETLNQGLCSLVHLQELYIASNDLRGSLP  194 (207)
Q Consensus       117 ~~~~~~~L~~L~l~~~~n--~~~~~~~~~l~~~~~~L~~L~l~~n~~~~~~~i~~~~~~~~~~~L~~L~l~~n~l~~~~p  194 (207)
                      .+..+++|++|.++  .|  .+...+.-... .+|+|++++++.|.+.+-..+ +  .+..+.+|..|++..|......-
T Consensus        60 ~~P~Lp~LkkL~ls--dn~~~~~~~l~vl~e-~~P~l~~l~ls~Nki~~lstl-~--pl~~l~nL~~Ldl~n~~~~~l~d  133 (260)
T KOG2739|consen   60 NFPKLPKLKKLELS--DNYRRVSGGLEVLAE-KAPNLKVLNLSGNKIKDLSTL-R--PLKELENLKSLDLFNCSVTNLDD  133 (260)
T ss_pred             cCCCcchhhhhccc--CCcccccccceehhh-hCCceeEEeecCCcccccccc-c--hhhhhcchhhhhcccCCcccccc
Confidence            45566777777777  77  44433332333 567788888887777622233 1  34556667777777776553111


Q ss_pred             ---ccccCCCCCccCC
Q 038163          195 ---WCMANMTSLRILD  207 (207)
Q Consensus       195 ---~~~~~l~~L~~l~  207 (207)
                         ..|.-+++|+.+|
T Consensus       134 yre~vf~ll~~L~~LD  149 (260)
T KOG2739|consen  134 YREKVFLLLPSLKYLD  149 (260)
T ss_pred             HHHHHHHHhhhhcccc
Confidence               3355566666554

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.29  E-value=0.0017  Score=44.57  Aligned_cols=66  Identities=14%  Similarity=0.237  Sum_probs=31.7

Q ss_pred             eecCccccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcCC
Q 038163            9 LVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDD   81 (207)
Q Consensus         9 ~~p~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~~   81 (207)
                      .++..+|.++.+|+.+.+.. .+  ..-....|..++.|+.+.+..+ +.....   ..+..++.++.+.+..
T Consensus         2 ~i~~~~F~~~~~l~~i~~~~-~~--~~I~~~~F~~~~~l~~i~~~~~-~~~i~~---~~F~~~~~l~~i~~~~   67 (129)
T PF13306_consen    2 SIGNNAFYNCSNLESITFPN-TI--KKIGENAFSNCTSLKSINFPNN-LTSIGD---NAFSNCKSLESITFPN   67 (129)
T ss_dssp             EE-TTTTTT-TT--EEEETS-T----EE-TTTTTT-TT-SEEEESST-TSCE-T---TTTTT-TT-EEEEETS
T ss_pred             EECHHHHhCCCCCCEEEECC-Ce--eEeChhhccccccccccccccc-ccccce---eeeecccccccccccc
Confidence            35666777777788877764 34  2222335666667777777654 443322   3455555666666644

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.05  E-value=4.2e-05  Score=59.25  Aligned_cols=82  Identities=22%  Similarity=0.204  Sum_probs=62.0

Q ss_pred             CCCCCccceecccccccccCchhHHHHHhcCCCccEEEccCCccCcccccchhhhhcCCCCCceEEecCCcCCCCcc---
Q 038163          118 FPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSLSYYTLGINSSETLNQGLCSLVHLQELYIASNDLRGSLP---  194 (207)
Q Consensus       118 ~~~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L~l~~n~~~~~~~i~~~~~~~~~~~L~~L~l~~n~l~~~~p---  194 (207)
                      ..+++.|+.|.|+  -|+++.  .+.+. .|++|++|+|..|.|.   .+....-+.++++|+.|+|..|.=++..+   
T Consensus        37 c~kMp~lEVLsLS--vNkIss--L~pl~-rCtrLkElYLRkN~I~---sldEL~YLknlpsLr~LWL~ENPCc~~ag~nY  108 (388)
T KOG2123|consen   37 CEKMPLLEVLSLS--VNKISS--LAPLQ-RCTRLKELYLRKNCIE---SLDELEYLKNLPSLRTLWLDENPCCGEAGQNY  108 (388)
T ss_pred             HHhcccceeEEee--cccccc--chhHH-HHHHHHHHHHHhcccc---cHHHHHHHhcCchhhhHhhccCCcccccchhH
Confidence            3467889999999  999873  34555 7899999999999987   43111246778999999999998877655   


Q ss_pred             --ccccCCCCCccCC
Q 038163          195 --WCMANMTSLRILD  207 (207)
Q Consensus       195 --~~~~~l~~L~~l~  207 (207)
                        ..+..+|+|+.||
T Consensus       109 R~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen  109 RRKVLRVLPNLKKLD  123 (388)
T ss_pred             HHHHHHHcccchhcc
Confidence              3356688888876

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.00  E-value=0.001  Score=49.36  Aligned_cols=60  Identities=20%  Similarity=0.362  Sum_probs=44.1

Q ss_pred             CCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcCCCCCC
Q 038163           19 RKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDDSPLH   85 (207)
Q Consensus        19 ~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~   85 (207)
                      .....+|+++|.+..    ..-+..++.|++|.+++|.|+.+.|   .--..++.|+.|.+.+|.+.
T Consensus        42 d~~d~iDLtdNdl~~----l~~lp~l~rL~tLll~nNrIt~I~p---~L~~~~p~l~~L~LtnNsi~  101 (233)
T KOG1644|consen   42 DQFDAIDLTDNDLRK----LDNLPHLPRLHTLLLNNNRITRIDP---DLDTFLPNLKTLILTNNSIQ  101 (233)
T ss_pred             cccceecccccchhh----cccCCCccccceEEecCCcceeecc---chhhhccccceEEecCcchh
Confidence            356678888888822    2245577888999999999988877   33345677888888888876

>PRK15386 type III secretion protein GogB; Provisional

Probab=96.94  E-value=0.0022  Score=52.98  Aligned_cols=69  Identities=17%  Similarity=0.182  Sum_probs=44.9

Q ss_pred             cCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcCCCCCChHHHHhhccc
Q 038163           16 NGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDDSPLHISLLQSIASI   95 (207)
Q Consensus        16 ~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l   95 (207)
                      ..+++++.|++++|.+   ..+|.   --.+|+.|.+++|.--...|   ..+.  ..|++|++++|.....+|..+..|
T Consensus        49 ~~~~~l~~L~Is~c~L---~sLP~---LP~sLtsL~Lsnc~nLtsLP---~~LP--~nLe~L~Ls~Cs~L~sLP~sLe~L  117 (426)
T PRK15386         49 EEARASGRLYIKDCDI---ESLPV---LPNELTEITIENCNNLTTLP---GSIP--EGLEKLTVCHCPEISGLPESVRSL  117 (426)
T ss_pred             HHhcCCCEEEeCCCCC---cccCC---CCCCCcEEEccCCCCcccCC---chhh--hhhhheEccCcccccccccccceE
Confidence            4468899999999988   55662   12469999998765444556   3332  478999998884323455544433

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=96.87  E-value=0.0044  Score=42.49  Aligned_cols=123  Identities=19%  Similarity=0.254  Sum_probs=62.5

Q ss_pred             hhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcCCCCCChHHHHhhcccccccCCcccceeccccccccCCCC
Q 038163           40 SIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDDSPLHISLLQSIASIFPLLKNLSMIGCEVNGVIRGQDFP  119 (207)
Q Consensus        40 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~n~~~~~~~~~~~~~~~~~~  119 (207)
                      .|.++.+|+.+.+.. .+.....   ..+..+..|+.+.+..+ +.                    .++..      .+.
T Consensus         7 ~F~~~~~l~~i~~~~-~~~~I~~---~~F~~~~~l~~i~~~~~-~~--------------------~i~~~------~F~   55 (129)
T PF13306_consen    7 AFYNCSNLESITFPN-TIKKIGE---NAFSNCTSLKSINFPNN-LT--------------------SIGDN------AFS   55 (129)
T ss_dssp             TTTT-TT--EEEETS-T--EE-T---TTTTT-TT-SEEEESST-TS--------------------CE-TT------TTT
T ss_pred             HHhCCCCCCEEEECC-CeeEeCh---hhccccccccccccccc-cc--------------------cccee------eee
Confidence            567778899999874 4555444   56778888999998775 33                    12221      677


Q ss_pred             CCCccceecccccccccCchhHHHHHhcCCCccEEEccCCccCcccccchhhhhcCCCCCceEEecCCcCCCCccccccC
Q 038163          120 HSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSLSYYTLGINSSETLNQGLCSLVHLQELYIASNDLRGSLPWCMAN  199 (207)
Q Consensus       120 ~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L~l~~n~~~~~~~i~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~  199 (207)
                      +++.++.+.+.  . .+.......+. .++.++.+.+..+ +.   .+ +...+..+ .++.+.+.. .+.......|.+
T Consensus        56 ~~~~l~~i~~~--~-~~~~i~~~~F~-~~~~l~~i~~~~~-~~---~i-~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~  124 (129)
T PF13306_consen   56 NCKSLESITFP--N-NLKSIGDNAFS-NCTNLKNIDIPSN-IT---EI-GSSSFSNC-NLKEINIPS-NITKIEENAFKN  124 (129)
T ss_dssp             T-TT-EEEEET--S-TT-EE-TTTTT-T-TTECEEEETTT--B---EE-HTTTTTT--T--EEE-TT-B-SS----GGG-
T ss_pred             ccccccccccc--c-ccccccccccc-ccccccccccCcc-cc---EE-chhhhcCC-CceEEEECC-CccEECCccccc
Confidence            78788888886  5 33212233444 6889999999765 55   56 55467777 899998876 333334477888


Q ss_pred             CCCCc
Q 038163          200 MTSLR  204 (207)
Q Consensus       200 l~~L~  204 (207)
                      +++|+
T Consensus       125 ~~~l~  129 (129)
T PF13306_consen  125 CTKLK  129 (129)
T ss_dssp             -----
T ss_pred             cccCC
Confidence            88775

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.76  E-value=0.00097  Score=51.10  Aligned_cols=66  Identities=29%  Similarity=0.313  Sum_probs=31.8

Q ss_pred             cCCCCCcEEecCCC--cccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcCCCCCC
Q 038163           16 NGLRKLKSLDLSGV--GVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDDSPLH   85 (207)
Q Consensus        16 ~~l~~L~~L~ls~n--~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~   85 (207)
                      -.+++|++|.+|.|  .+  ...++..+..+++|++|++++|.+..  +.++..+.++.+|..|++.+|..+
T Consensus        62 P~Lp~LkkL~lsdn~~~~--~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl~pl~~l~nL~~Ldl~n~~~~  129 (260)
T KOG2739|consen   62 PKLPKLKKLELSDNYRRV--SGGLEVLAEKAPNLKVLNLSGNKIKD--LSTLRPLKELENLKSLDLFNCSVT  129 (260)
T ss_pred             CCcchhhhhcccCCcccc--cccceehhhhCCceeEEeecCCcccc--ccccchhhhhcchhhhhcccCCcc
Confidence            34555555555555  33  33444444444555555555555542  111123344455555555555433

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.37  E-value=0.00036  Score=54.24  Aligned_cols=101  Identities=22%  Similarity=0.235  Sum_probs=61.3

Q ss_pred             CCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcCCCCCChHHHHhhccccc
Q 038163           18 LRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDDSPLHISLLQSIASIFP   97 (207)
Q Consensus        18 l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~   97 (207)
                      +.+.++|+..++.++|   + .....++.|+.|.|+.|.|+..     ..+..|++|++|.|..|.|.+..         
T Consensus        18 l~~vkKLNcwg~~L~D---I-sic~kMp~lEVLsLSvNkIssL-----~pl~rCtrLkElYLRkN~I~sld---------   79 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDD---I-SICEKMPLLEVLSLSVNKISSL-----APLQRCTRLKELYLRKNCIESLD---------   79 (388)
T ss_pred             HHHhhhhcccCCCccH---H-HHHHhcccceeEEeeccccccc-----hhHHHHHHHHHHHHHhcccccHH---------
Confidence            4556667777777632   1 1234567777777777777754     34566777777777777665210         


Q ss_pred             ccCCcccceeccccccccCCCCCCCccceecccccccccCchhH-----HHHHhcCCCccEEE
Q 038163           98 LLKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFL-----QIISESMSSLKYLS  155 (207)
Q Consensus        98 L~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~~~-----~~l~~~~~~L~~L~  155 (207)
                              .+.        .+.++++|+.|+|.  .|+.-+..+     ..+. .+|+|+.|+
T Consensus        80 --------EL~--------YLknlpsLr~LWL~--ENPCc~~ag~nYR~~VLR-~LPnLkKLD  123 (388)
T KOG2123|consen   80 --------ELE--------YLKNLPSLRTLWLD--ENPCCGEAGQNYRRKVLR-VLPNLKKLD  123 (388)
T ss_pred             --------HHH--------HHhcCchhhhHhhc--cCCcccccchhHHHHHHH-Hcccchhcc
Confidence                    011        45667778888888  776654432     2355 677777775

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.00  E-value=0.0034  Score=29.21  Aligned_cols=21  Identities=33%  Similarity=0.562  Sum_probs=12.2

Q ss_pred             CCceEEecCCcCCCCccccccC
Q 038163          178 HLQELYIASNDLRGSLPWCMAN  199 (207)
Q Consensus       178 ~L~~L~l~~n~l~~~~p~~~~~  199 (207)
                      +|++|++++|+++ .+|..|++
T Consensus         1 ~L~~Ldls~n~l~-~ip~~~~~   21 (22)
T PF00560_consen    1 NLEYLDLSGNNLT-SIPSSFSN   21 (22)
T ss_dssp             TESEEEETSSEES-EEGTTTTT
T ss_pred             CccEEECCCCcCE-eCChhhcC
Confidence            3566666666666 55554543

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.63  E-value=0.0084  Score=27.84  Aligned_cols=18  Identities=39%  Similarity=0.514  Sum_probs=9.6

Q ss_pred             CcEEecCCCcccCCCcchhhh
Q 038163           21 LKSLDLSGVGVRDGSKLLQSI   41 (207)
Q Consensus        21 L~~L~ls~n~i~~~~~~~~~~   41 (207)
                      |++||+++|.+  . .+|..|
T Consensus         2 L~~Ldls~n~l--~-~ip~~~   19 (22)
T PF00560_consen    2 LEYLDLSGNNL--T-SIPSSF   19 (22)
T ss_dssp             ESEEEETSSEE--S-EEGTTT
T ss_pred             ccEEECCCCcC--E-eCChhh
Confidence            45566666655  2 455444

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=95.36  E-value=0.017  Score=48.57  Aligned_cols=35  Identities=26%  Similarity=0.273  Sum_probs=16.1

Q ss_pred             CCCCCEEEcCCCc-CCcc-cccchhcccCCCCccEEEcCC
Q 038163           44 FSSLNSLYLSSNN-FTET-VTITTQELHNFTNMEYLKLDD   81 (207)
Q Consensus        44 l~~L~~L~l~~n~-~~~~-~~~~~~~l~~l~~L~~L~l~~   81 (207)
                      ++.|+.|.+.++. +... .-   .....++.|+.|++++
T Consensus       187 ~~~L~~l~l~~~~~~~~~~~~---~~~~~~~~L~~L~l~~  223 (482)
T KOG1947|consen  187 CPLLKRLSLSGCSKITDDSLD---ALALKCPNLEELDLSG  223 (482)
T ss_pred             CchhhHhhhcccccCChhhHH---HHHhhCchhheecccC
Confidence            4555555555442 2211 11   2334555566666654

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=95.24  E-value=0.013  Score=49.22  Aligned_cols=65  Identities=20%  Similarity=0.156  Sum_probs=34.4

Q ss_pred             CCCccceecccccccc-cCchhHHHHHhcCCCccEEEccCCc-cCcccccchhhhhcCCCCCceEEecCCcC
Q 038163          120 HSKSLEHLDMEFMRIA-LNTSFLQIISESMSSLKYLSLSYYT-LGINSSETLNQGLCSLVHLQELYIASNDL  189 (207)
Q Consensus       120 ~~~~L~~L~l~~~~n~-~~~~~~~~l~~~~~~L~~L~l~~n~-~~~~~~i~~~~~~~~~~~L~~L~l~~n~l  189 (207)
                      .+++|+.++++  ++. +++.....+...+++|+.|.+..|. +++ ..+ .. ....+++|++|+++++..
T Consensus       241 ~~~~L~~l~l~--~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~-~gl-~~-i~~~~~~L~~L~l~~c~~  307 (482)
T KOG1947|consen  241 ICRKLKSLDLS--GCGLVTDIGLSALASRCPNLETLSLSNCSNLTD-EGL-VS-IAERCPSLRELDLSGCHG  307 (482)
T ss_pred             hcCCcCccchh--hhhccCchhHHHHHhhCCCcceEccCCCCccch-hHH-HH-HHHhcCcccEEeeecCcc
Confidence            34566666666  554 5544444444345666666655555 341 122 22 444556666666666554

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.53  E-value=0.014  Score=43.40  Aligned_cols=79  Identities=20%  Similarity=0.193  Sum_probs=57.0

Q ss_pred             CccceecccccccccCchhHHHHHhcCCCccEEEccCCccCcccccchhhhhc-CCCCCceEEecCCc-CCCCccccccC
Q 038163          122 KSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSLSYYTLGINSSETLNQGLC-SLVHLQELYIASND-LRGSLPWCMAN  199 (207)
Q Consensus       122 ~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L~l~~n~~~~~~~i~~~~~~~-~~~~L~~L~l~~n~-l~~~~p~~~~~  199 (207)
                      -.++.+|.+  +..+..+..+.+. .++.++.|.+.+|..-  ++. ...-++ -.++|+.|++++|. |++....++.+
T Consensus       101 ~~IeaVDAs--ds~I~~eGle~L~-~l~~i~~l~l~~ck~~--dD~-~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~  174 (221)
T KOG3864|consen  101 VKIEAVDAS--DSSIMYEGLEHLR-DLRSIKSLSLANCKYF--DDW-CLERLGGLAPSLQDLDLSGCPRITDGGLACLLK  174 (221)
T ss_pred             ceEEEEecC--CchHHHHHHHHHh-ccchhhhheeccccch--hhH-HHHHhcccccchheeeccCCCeechhHHHHHHH
Confidence            467889998  8888877788888 8889999999888766  332 211233 35789999999886 44445577777


Q ss_pred             CCCCccC
Q 038163          200 MTSLRIL  206 (207)
Q Consensus       200 l~~L~~l  206 (207)
                      +++|+.|
T Consensus       175 lknLr~L  181 (221)
T KOG3864|consen  175 LKNLRRL  181 (221)
T ss_pred             hhhhHHH
Confidence            7877754

>PRK15386 type III secretion protein GogB; Provisional

Probab=94.44  E-value=0.18  Score=42.02  Aligned_cols=124  Identities=15%  Similarity=0.109  Sum_probs=68.2

Q ss_pred             CCCccCceecCccccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCC-cCCcccccchhcccCCCCccEEEcC
Q 038163            2 SFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSN-NFTETVTITTQELHNFTNMEYLKLD   80 (207)
Q Consensus         2 ~~n~~~~~~p~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n-~~~~~~~~~~~~l~~l~~L~~L~l~   80 (207)
                      ++|.+. .+| +.   -.+|++|+++++.-  ...+|..+.  ++|++|++++| .+. .+|   .      .|+.|++.
T Consensus        60 s~c~L~-sLP-~L---P~sLtsL~Lsnc~n--LtsLP~~LP--~nLe~L~Ls~Cs~L~-sLP---~------sLe~L~L~  120 (426)
T PRK15386         60 KDCDIE-SLP-VL---PNELTEITIENCNN--LTTLPGSIP--EGLEKLTVCHCPEIS-GLP---E------SVRSLEIK  120 (426)
T ss_pred             CCCCCc-ccC-CC---CCCCcEEEccCCCC--cccCCchhh--hhhhheEccCccccc-ccc---c------ccceEEeC
Confidence            445555 455 21   23599999988655  356665543  58999999988 444 345   2      37777777


Q ss_pred             CCCCC--hHHHHhhcccccccCCcccceeccccccccCCCC--CCCccceecccccccccCchhHHHHHhcCCCccEEEc
Q 038163           81 DSPLH--ISLLQSIASIFPLLKNLSMIGCEVNGVIRGQDFP--HSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSL  156 (207)
Q Consensus        81 ~~~~~--~~~~~~l~~l~~L~~n~~~~~~~~~~~~~~~~~~--~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L~l  156 (207)
                      .+...  ..+|..+..|.--..+....   .       .+.  -..+|++|++.  +|... ..|..+.   .+|+.|.+
T Consensus       121 ~n~~~~L~~LPssLk~L~I~~~n~~~~---~-------~lp~~LPsSLk~L~Is--~c~~i-~LP~~LP---~SLk~L~l  184 (426)
T PRK15386        121 GSATDSIKNVPNGLTSLSINSYNPENQ---A-------RIDNLISPSLKTLSLT--GCSNI-ILPEKLP---ESLQSITL  184 (426)
T ss_pred             CCCCcccccCcchHhheeccccccccc---c-------ccccccCCcccEEEec--CCCcc-cCccccc---ccCcEEEe
Confidence            65543  23344333222101111100   0       111  12478999998  77654 2333322   37888888


Q ss_pred             cCCc
Q 038163          157 SYYT  160 (207)
Q Consensus       157 ~~n~  160 (207)
                      +.+.
T Consensus       185 s~n~  188 (426)
T PRK15386        185 HIEQ  188 (426)
T ss_pred             cccc
Confidence            7653

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=93.64  E-value=0.038  Score=26.05  Aligned_cols=21  Identities=19%  Similarity=0.283  Sum_probs=11.4

Q ss_pred             CCccEEEcCCCCCChHHHHhh
Q 038163           72 TNMEYLKLDDSPLHISLLQSI   92 (207)
Q Consensus        72 ~~L~~L~l~~~~~~~~~~~~l   92 (207)
                      ++|++|++++|.++...+..+
T Consensus         2 ~~L~~L~l~~n~i~~~g~~~l   22 (24)
T PF13516_consen    2 PNLETLDLSNNQITDEGASAL   22 (24)
T ss_dssp             TT-SEEE-TSSBEHHHHHHHH
T ss_pred             CCCCEEEccCCcCCHHHHHHh
Confidence            456677777777665554443

...

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.96  E-value=0.062  Score=40.05  Aligned_cols=68  Identities=19%  Similarity=0.272  Sum_probs=49.9

Q ss_pred             CCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhccc-CCCCccEEEcCCCC-CChHHHH
Q 038163           19 RKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELH-NFTNMEYLKLDDSP-LHISLLQ   90 (207)
Q Consensus        19 ~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~-~l~~L~~L~l~~~~-~~~~~~~   90 (207)
                      -.++.+|-++..|  .....+.+..++.++.|.+.+|.--+.+..  ..++ -.++||.|+++.|. |+.....
T Consensus       101 ~~IeaVDAsds~I--~~eGle~L~~l~~i~~l~l~~ck~~dD~~L--~~l~~~~~~L~~L~lsgC~rIT~~GL~  170 (221)
T KOG3864|consen  101 VKIEAVDASDSSI--MYEGLEHLRDLRSIKSLSLANCKYFDDWCL--ERLGGLAPSLQDLDLSGCPRITDGGLA  170 (221)
T ss_pred             ceEEEEecCCchH--HHHHHHHHhccchhhhheeccccchhhHHH--HHhcccccchheeeccCCCeechhHHH
Confidence            3477899999999  777888899999999999988854443321  3444 35789999999886 6644433

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=92.87  E-value=0.088  Score=22.67  Aligned_cols=12  Identities=42%  Similarity=0.636  Sum_probs=4.7

Q ss_pred             CCcEEecCCCcc
Q 038163           20 KLKSLDLSGVGV   31 (207)
Q Consensus        20 ~L~~L~ls~n~i   31 (207)
                      +|++|++++|++
T Consensus         2 ~L~~L~l~~n~L   13 (17)
T PF13504_consen    2 NLRTLDLSNNRL   13 (17)
T ss_dssp             T-SEEEETSS--
T ss_pred             ccCEEECCCCCC
Confidence            345555555554

...

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=92.65  E-value=0.16  Score=42.04  Aligned_cols=158  Identities=15%  Similarity=0.095  Sum_probs=78.0

Q ss_pred             CCCCCcEEecCCCc-ccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhccc-CCCCccEEEcCCCC-CChHHHHhh-
Q 038163           17 GLRKLKSLDLSGVG-VRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELH-NFTNMEYLKLDDSP-LHISLLQSI-   92 (207)
Q Consensus        17 ~l~~L~~L~ls~n~-i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~-~l~~L~~L~l~~~~-~~~~~~~~l-   92 (207)
                      +...+.++++..+. ++| ..+...-..+..|+.|+.+++..-+..+.  ..++ +..+|++|.+..|+ ++......+ 
T Consensus       266 ~~~~i~~lnl~~c~~lTD-~~~~~i~~~c~~lq~l~~s~~t~~~d~~l--~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~  342 (483)
T KOG4341|consen  266 YCLEILKLNLQHCNQLTD-EDLWLIACGCHALQVLCYSSCTDITDEVL--WALGQHCHNLQVLELSGCQQFSDRGFTMLG  342 (483)
T ss_pred             cChHhhccchhhhccccc-hHHHHHhhhhhHhhhhcccCCCCCchHHH--HHHhcCCCceEEEeccccchhhhhhhhhhh
Confidence            34445556654443 322 12333334567888888877643222111  2333 56788888888886 332222222 


Q ss_pred             ---cccccc----cCCcccceeccccccccCCCCCCCccceecccccccc-cCchhHHHHH---hcCCCccEEEccCCcc
Q 038163           93 ---ASIFPL----LKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIA-LNTSFLQIIS---ESMSSLKYLSLSYYTL  161 (207)
Q Consensus        93 ---~~l~~L----~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~-~~~~~~~~l~---~~~~~L~~L~l~~n~~  161 (207)
                         ..|+.+    .+....+++..       .-.+++.|+.+.++  -|. +++.....+.   ..+..+..+.++++..
T Consensus       343 rn~~~Le~l~~e~~~~~~d~tL~s-------ls~~C~~lr~lsls--hce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~  413 (483)
T KOG4341|consen  343 RNCPHLERLDLEECGLITDGTLAS-------LSRNCPRLRVLSLS--HCELITDEGIRHLSSSSCSLEGLEVLELDNCPL  413 (483)
T ss_pred             cCChhhhhhcccccceehhhhHhh-------hccCCchhccCChh--hhhhhhhhhhhhhhhccccccccceeeecCCCC
Confidence               122222    11111222222       23456677777776  553 3433222222   1234566667777666


Q ss_pred             CcccccchhhhhcCCCCCceEEecCCcC
Q 038163          162 GINSSETLNQGLCSLVHLQELYIASNDL  189 (207)
Q Consensus       162 ~~~~~i~~~~~~~~~~~L~~L~l~~n~l  189 (207)
                      ..+...   ..+..+++|+.+++-+++-
T Consensus       414 i~d~~L---e~l~~c~~Leri~l~~~q~  438 (483)
T KOG4341|consen  414 ITDATL---EHLSICRNLERIELIDCQD  438 (483)
T ss_pred             chHHHH---HHHhhCcccceeeeechhh
Confidence            521121   2456677777777776654

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=92.39  E-value=0.064  Score=44.21  Aligned_cols=181  Identities=19%  Similarity=0.143  Sum_probs=98.4

Q ss_pred             ccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCC-cCCcccccchhcccCCCCccEEEcCCCC-CChHHHHhh
Q 038163           15 YNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSN-NFTETVTITTQELHNFTNMEYLKLDDSP-LHISLLQSI   92 (207)
Q Consensus        15 ~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n-~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~l   92 (207)
                      +.+.+.++++.+++|.=.....+...-....-+..+++..| .+++..-  +..-..+..||.|+.+++. +.......+
T Consensus       238 ~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~--~~i~~~c~~lq~l~~s~~t~~~d~~l~aL  315 (483)
T KOG4341|consen  238 QRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDL--WLIACGCHALQVLCYSSCTDITDEVLWAL  315 (483)
T ss_pred             hccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHH--HHHhhhhhHhhhhcccCCCCCchHHHHHH
Confidence            45667788887776542000112222234455666675455 3444321  1233467789999998875 444444444


Q ss_pred             c-ccccc-----cCCc-ccceeccccccccCCC-CCCCccceecccccccccC-chhHHHHHhcCCCccEEEccCCccCc
Q 038163           93 A-SIFPL-----LKNL-SMIGCEVNGVIRGQDF-PHSKSLEHLDMEFMRIALN-TSFLQIISESMSSLKYLSLSYYTLGI  163 (207)
Q Consensus        93 ~-~l~~L-----~~n~-~~~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~n~~~-~~~~~~l~~~~~~L~~L~l~~n~~~~  163 (207)
                      + ...+|     ..++ ++..-..       .+ .+++.|+.+++.  .+... +.....+...++.|+.+.+++|...+
T Consensus       316 g~~~~~L~~l~l~~c~~fsd~~ft-------~l~rn~~~Le~l~~e--~~~~~~d~tL~sls~~C~~lr~lslshce~it  386 (483)
T KOG4341|consen  316 GQHCHNLQVLELSGCQQFSDRGFT-------MLGRNCPHLERLDLE--ECGLITDGTLASLSRNCPRLRVLSLSHCELIT  386 (483)
T ss_pred             hcCCCceEEEeccccchhhhhhhh-------hhhcCChhhhhhccc--ccceehhhhHhhhccCCchhccCChhhhhhhh
Confidence            2 22333     2211 2211111       22 356889999999  77432 22233333378899999999887653


Q ss_pred             ccccc-hhhhhcCCCCCceEEecCCcCCCC-ccccccCCCCCccC
Q 038163          164 NSSET-LNQGLCSLVHLQELYIASNDLRGS-LPWCMANMTSLRIL  206 (207)
Q Consensus       164 ~~~i~-~~~~~~~~~~L~~L~l~~n~l~~~-~p~~~~~l~~L~~l  206 (207)
                      ++.|. ....-.+...+..+.++.++...+ ....+..+++|+.+
T Consensus       387 D~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri  431 (483)
T KOG4341|consen  387 DEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERI  431 (483)
T ss_pred             hhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCccccee
Confidence            33220 111224467788899999987653 22555667777653

>smart00370 LRR Leucine-rich repeats, outliers

Probab=88.89  E-value=0.45  Score=22.64  Aligned_cols=13  Identities=38%  Similarity=0.532  Sum_probs=6.7

Q ss_pred             CCCcEEecCCCcc
Q 038163           19 RKLKSLDLSGVGV   31 (207)
Q Consensus        19 ~~L~~L~ls~n~i   31 (207)
                      ++|++|+++.|.+
T Consensus         2 ~~L~~L~L~~N~l   14 (26)
T smart00370        2 PNLRELDLSNNQL   14 (26)
T ss_pred             CCCCEEECCCCcC
Confidence            3445555555555

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=88.89  E-value=0.45  Score=22.64  Aligned_cols=13  Identities=38%  Similarity=0.532  Sum_probs=6.7

Q ss_pred             CCCcEEecCCCcc
Q 038163           19 RKLKSLDLSGVGV   31 (207)
Q Consensus        19 ~~L~~L~ls~n~i   31 (207)
                      ++|++|+++.|.+
T Consensus         2 ~~L~~L~L~~N~l   14 (26)
T smart00369        2 PNLRELDLSNNQL   14 (26)
T ss_pred             CCCCEEECCCCcC
Confidence            3445555555555

>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type

Probab=88.68  E-value=0.63  Score=22.79  Aligned_cols=21  Identities=14%  Similarity=0.189  Sum_probs=14.5

Q ss_pred             CCccEEEcCCCCCChHHHHhh
Q 038163           72 TNMEYLKLDDSPLHISLLQSI   92 (207)
Q Consensus        72 ~~L~~L~l~~~~~~~~~~~~l   92 (207)
                      +.|++|+|++|.+..+....+
T Consensus         2 ~~L~~LdL~~N~i~~~G~~~L   22 (28)
T smart00368        2 PSLRELDLSNNKLGDEGARAL   22 (28)
T ss_pred             CccCEEECCCCCCCHHHHHHH
Confidence            457888888888876655444

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=86.38  E-value=0.016  Score=49.20  Aligned_cols=17  Identities=35%  Similarity=0.452  Sum_probs=8.5

Q ss_pred             cCCCCCceEEecCCcCC
Q 038163          174 CSLVHLQELYIASNDLR  190 (207)
Q Consensus       174 ~~~~~L~~L~l~~n~l~  190 (207)
                      ..+..++++.++.|.+.
T Consensus       287 ~~~~~l~~l~l~~n~l~  303 (478)
T KOG4308|consen  287 VSCRQLEELSLSNNPLT  303 (478)
T ss_pred             hhhHHHHHhhcccCccc
Confidence            33445555555555544

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=83.41  E-value=0.026  Score=43.12  Aligned_cols=84  Identities=14%  Similarity=0.102  Sum_probs=56.9

Q ss_pred             hhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcCCCCCChHHHHhhcccccc----cCCcccceecccccccc
Q 038163           40 SIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDDSPLHISLLQSIASIFPL----LKNLSMIGCEVNGVIRG  115 (207)
Q Consensus        40 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L----~~n~~~~~~~~~~~~~~  115 (207)
                      .+..+...+.||++.|.+....    ..++.++.+..||++-|.+. ..+.+.+....+    .+++.....|.      
T Consensus        37 ei~~~kr~tvld~~s~r~vn~~----~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~~~p~------  105 (326)
T KOG0473|consen   37 EIASFKRVTVLDLSSNRLVNLG----KNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHSQQPK------  105 (326)
T ss_pred             hhhccceeeeehhhhhHHHhhc----cchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchhhCCc------
Confidence            4555677777888777655432    25556677778888877765 445555555544    44555555777      


Q ss_pred             CCCCCCCccceecccccccccC
Q 038163          116 QDFPHSKSLEHLDMEFMRIALN  137 (207)
Q Consensus       116 ~~~~~~~~L~~L~l~~~~n~~~  137 (207)
                       .+...+++++++.-  ++.+.
T Consensus       106 -s~~k~~~~k~~e~k--~~~~~  124 (326)
T KOG0473|consen  106 -SQKKEPHPKKNEQK--KTEFF  124 (326)
T ss_pred             -cccccCCcchhhhc--cCcch
Confidence             88889999999988  77765

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=82.49  E-value=1.8  Score=20.60  Aligned_cols=20  Identities=25%  Similarity=0.268  Sum_probs=12.0

Q ss_pred             CCccEEEcCCCC-CChHHHHh
Q 038163           72 TNMEYLKLDDSP-LHISLLQS   91 (207)
Q Consensus        72 ~~L~~L~l~~~~-~~~~~~~~   91 (207)
                      ++|++|++++|. +++.....
T Consensus         2 ~~L~~L~l~~C~~itD~gl~~   22 (26)
T smart00367        2 PNLRELDLSGCTNITDEGLQA   22 (26)
T ss_pred             CCCCEeCCCCCCCcCHHHHHH
Confidence            567777777764 55544433

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	207
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-14
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-11
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	8e-09
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-08
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-07
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-13
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-10
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-10
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-04
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-04
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-11
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-10
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-09
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-08
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	8e-07
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-05
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	8e-05
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-04
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-10
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-10
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	8e-10
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-04
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-10
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-10
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-05
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-08
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-06
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-09
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-07
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-09
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-09
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	6e-05
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-09
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-07
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	7e-07
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	6e-06
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-09
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-08
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-08
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-08
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-09
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	9e-05
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	6e-09
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	9e-08
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-05
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	6e-09
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	9e-06
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	7e-09
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	7e-09
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-04
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	9e-09
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-08
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-04
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-04
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-08
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	8e-07
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-06
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	7e-08
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-07
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-04
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-07
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-07
1o6v_A	466	Internalin A; bacterial infection, extracellular r	9e-07
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-06
1o6v_A	466	Internalin A; bacterial infection, extracellular r	7e-06
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-04
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-07
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	6e-07
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	7e-07
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-06
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-06
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	7e-06
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	7e-06
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	7e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-06
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	1e-05
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-05
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-05
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-05
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-04
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-05
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-05
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-04
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-05
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	2e-05
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	9e-05
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-05
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	9e-05
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-05
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-04
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-05
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	5e-05
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	4e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	7e-05
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	7e-05
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	5e-04
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	9e-05
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-04
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-04
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-04
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-04
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-04
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	1e-04
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	3e-04
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-04
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	8e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 69.2 bits (170), Expect = 4e-14
 Identities = 42/190 (22%), Positives = 89/190 (46%), Gaps = 15/190 (7%)

Query: 21  LKSLDLSGVGVR-DGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKL 79
           + S+DLS   +    S +  S+ S + L SL+LS+++   +V+          ++  L L
Sbjct: 52  VTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVS----GFKCSASLTSLDL 107

Query: 80  DDSPLH--ISLLQSIASIFPLLKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALN 137
             + L   ++ L S+ S    LK L++    ++   +        SLE LD+    I+  
Sbjct: 108 SRNSLSGPVTTLTSLGS-CSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGA 166

Query: 138 TSFLQIISESMSSLKYLSLSYYTLGINSSETLNQGLCSLVHLQELYIASNDLRGSLPWCM 197
                ++S+    LK+L++S   +      + +  +   V+L+ L ++SN+    +P+ +
Sbjct: 167 NVVGWVLSDGCGELKHLAISGNKI------SGDVDVSRCVNLEFLDVSSNNFSTGIPF-L 219

Query: 198 ANMTSLRILD 207
            + ++L+ LD
Sbjct: 220 GDCSALQHLD 229

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 61.1 bits (149), Expect = 3e-11
 Identities = 42/194 (21%), Positives = 70/194 (36%), Gaps = 42/194 (21%)

Query: 18  LRKLKSLDLSG---VGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNM 74
              L  LDLSG    G      +    GS S L SL LSSNNF+    +    L     +
Sbjct: 293 CDTLTGLDLSGNHFYG-----AVPPFFGSCSLLESLALSSNNFSGE--LPMDTLLKMRGL 345

Query: 75  EYLKLDDSPLHISLLQSIASIFPLLKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRI 134
           + L L  +     L +S+ ++   L  L +     +G I                     
Sbjct: 346 KVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPI--------------------- 384

Query: 135 ALNTSFLQIISESMSSLKYLSLSYYTLGINS-SETLNQGLCSLVHLQELYIASNDLRGSL 193
                   +     ++L+ L L       N  +  +   L +   L  L+++ N L G++
Sbjct: 385 -----LPNLCQNPKNTLQELYLQN-----NGFTGKIPPTLSNCSELVSLHLSFNYLSGTI 434

Query: 194 PWCMANMTSLRILD 207
           P  + +++ LR L 
Sbjct: 435 PSSLGSLSKLRDLK 448

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 53.8 bits (130), Expect = 8e-09
 Identities = 40/209 (19%), Positives = 74/209 (35%), Gaps = 21/209 (10%)

Query: 2   SFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDG-SKLLQSIGSFSSLNSLYLSSNNFTET 60
           S N ++      G   L  L+ LDLS   +                L  L +S N  +  
Sbjct: 134 SSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGD 193

Query: 61  VTITTQELHNFTNMEYLKLDDSPLHISLLQSIASIFPL--LKNLSMIGCEVNGVIRGQDF 118
           V ++        N+E+L +  +         I  +     L++L + G +++G    +  
Sbjct: 194 VDVS-----RCVNLEFLDVSSNNFS----TGIPFLGDCSALQHLDISGNKLSGDF-SRAI 243

Query: 119 PHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSLSYYTLGINSSETLNQGLCSLVH 178
                L+ L++       N     I    + SL+YLSL+         + L     +   
Sbjct: 244 STCTELKLLNISS-----NQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFL---SGACDT 295

Query: 179 LQELYIASNDLRGSLPWCMANMTSLRILD 207
           L  L ++ N   G++P    + + L  L 
Sbjct: 296 LTGLDLSGNHFYGAVPPFFGSCSLLESLA 324

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 53.0 bits (128), Expect = 1e-08
 Identities = 45/218 (20%), Positives = 75/218 (34%), Gaps = 43/218 (19%)

Query: 18  LRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYL 77
              L+ LD+SG  +       ++I + + L  L +SSN F   +           +++YL
Sbjct: 222 CSALQHLDISGNKL--SGDFSRAISTCTELKLLNISSNQFVGPIPPL-----PLKSLQYL 274

Query: 78  KLDDSPLHISLLQSIASIFPLLKNLSMIGCEVNGVIRGQDFPHS----KSLEHLDMEFMR 133
            L ++     +   ++     L  L + G    G +     P        LE L +    
Sbjct: 275 SLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAV-----PPFFGSCSLLESLALSSNN 329

Query: 134 IALNTSFLQIISESMSSLKYLSLSY--------YTLGINSSETL-------NQ------- 171
              +          M  LK L LS+         +L  N S +L       N        
Sbjct: 330 --FSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLT-NLSASLLTLDLSSNNFSGPILP 386

Query: 172 --GLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILD 207
                    LQELY+ +N   G +P  ++N + L  L 
Sbjct: 387 NLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLH 424

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 48.4 bits (116), Expect = 5e-07
 Identities = 35/169 (20%), Positives = 66/169 (39%), Gaps = 22/169 (13%)

Query: 40  SIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDDSPLHISLLQSIASIFPLL 99
           ++ + S L SL+LS N  + T+      L + + +  LKL  + L   + Q +  +   L
Sbjct: 413 TLSNCSELVSLHLSFNYLSGTIP---SSLGSLSKLRDLKLWLNMLEGEIPQELMYV-KTL 468

Query: 100 KNLSMIGCEVNGVIRGQDFPHS----KSLEHLDMEFMRIALNTSFLQIISESMSSLKYLS 155
           + L +   ++ G I     P       +L  + +       N      I + +  L+  +
Sbjct: 469 ETLILDFNDLTGEI-----PSGLSNCTNLNWISLS------NNRLTGEIPKWIGRLE--N 515

Query: 156 LSYYTLGINS-SETLNQGLCSLVHLQELYIASNDLRGSLPWCMANMTSL 203
           L+   L  NS S  +   L     L  L + +N   G++P  M   +  
Sbjct: 516 LAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGK 564

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 44.1 bits (105), Expect = 1e-05
 Identities = 51/216 (23%), Positives = 93/216 (43%), Gaps = 30/216 (13%)

Query: 1   MSFNEINNLVVPQGYNGLRKLKSLDLSG---VGVRDGSKLLQSIG--SFSSLNSLYLSSN 55
           +SFNE +  +     N    L +LDLS     G      +L ++     ++L  LYL +N
Sbjct: 350 LSFNEFSGELPESLTNLSASLLTLDLSSNNFSG-----PILPNLCQNPKNTLQELYLQNN 404

Query: 56  NFTETVTITTQELHNFTNMEYLKLDDSPLHISLLQSIASIFPLLKNLSMIGCEVNGVIRG 115
            FT  +      L N + +  L L  + L  ++  S+ S    L++L +    + G I  
Sbjct: 405 GFTGKIP---PTLSNCSELVSLHLSFNYLSGTIPSSLGS-LSKLRDLKLWLNMLEGEI-P 459

Query: 116 QDFPHSKSLEHLDMEFMRIALNTSFLQIISES---MSSLKYLSLSYYTLGINS-SETLNQ 171
           Q+  + K+LE L ++             I       ++L ++SLS      N  +  + +
Sbjct: 460 QELMYVKTLETLILD------FNDLTGEIPSGLSNCTNLNWISLSN-----NRLTGEIPK 508

Query: 172 GLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILD 207
            +  L +L  L +++N   G++P  + +  SL  LD
Sbjct: 509 WIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLD 544

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 65.8 bits (161), Expect = 6e-13
 Identities = 39/206 (18%), Positives = 78/206 (37%), Gaps = 10/206 (4%)

Query: 1   MSFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTET 60
           +  N     +       L  L+ LDLS   +         + + S L SL LS N     
Sbjct: 332 IKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPL-- 389

Query: 61  VTITTQELHNFTNMEYLKLDDSPLHISLLQSIASIFPLLKNLSMIGCEVNGVIRGQDFPH 120
            ++ T+       +E L L  + L +   QS      LLK L++    ++       F  
Sbjct: 390 -SLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQL-FDG 447

Query: 121 SKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSLSYYTLGINSSETLNQG-LCSLVHL 179
             +L+HL+++               +++  L+ L LS+         +++Q    SL  +
Sbjct: 448 LPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSF-----CDLSSIDQHAFTSLKMM 502

Query: 180 QELYIASNDLRGSLPWCMANMTSLRI 205
             + ++ N L  S    ++++  + +
Sbjct: 503 NHVDLSHNRLTSSSIEALSHLKGIYL 528

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 59.3 bits (144), Expect = 1e-10
 Identities = 41/192 (21%), Positives = 75/192 (39%), Gaps = 10/192 (5%)

Query: 16  NGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNME 75
           + ++ L       +   D S  +       S+ S+ L  + F     I++   H F+ ++
Sbjct: 225 STIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFF---NISSNTFHCFSGLQ 281

Query: 76  YLKLDDSPLHISLLQSIASIFPLLKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIA 135
            L L  +  H+S L S       LK L +   +   + +     +  SL HL ++     
Sbjct: 282 ELDLTAT--HLSELPSGLVGLSTLKKLVLSANKFENLCQI-SASNFPSLTHLSIKGNTK- 337

Query: 136 LNTSFLQIISESMSSLKYLSLSYYTLGINSSETLNQGLCSLVHLQELYIASNDLRGSLPW 195
                     E++ +L+ L LS+    I +S+  N  L +L HLQ L ++ N+       
Sbjct: 338 -RLELGTGCLENLENLRELDLSH--DDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTE 394

Query: 196 CMANMTSLRILD 207
                  L +LD
Sbjct: 395 AFKECPQLELLD 406

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 58.1 bits (141), Expect = 3e-10
 Identities = 34/207 (16%), Positives = 78/207 (37%), Gaps = 14/207 (6%)

Query: 2   SFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETV 61
             +   N+     ++    L+ LDL+   +   S+L   +   S+L  L LS+N F    
Sbjct: 262 QKHYFFNIS-SNTFHCFSGLQELDLTATHL---SELPSGLVGLSTLKKLVLSANKFEN-- 315

Query: 62  TITTQELHNFTNMEYLKLDDSPLHISLLQSIASIFPLLKNLSMIGCEVNGV-IRGQDFPH 120
            +      NF ++ +L +  +   + L          L+ L +   ++           +
Sbjct: 316 -LCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRN 374

Query: 121 SKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSLSYYTLGINSSETLNQGLCSLVHLQ 180
              L+ L++ +       S      +    L+ L L++  L +  +++      +L  L+
Sbjct: 375 LSHLQSLNLSYNEP---LSLKTEAFKECPQLELLDLAFTRLKVKDAQSP---FQNLHLLK 428

Query: 181 ELYIASNDLRGSLPWCMANMTSLRILD 207
            L ++ + L  S       + +L+ L+
Sbjct: 429 VLNLSHSLLDISSEQLFDGLPALQHLN 455

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 45.8 bits (109), Expect = 3e-06
 Identities = 36/214 (16%), Positives = 68/214 (31%), Gaps = 26/214 (12%)

Query: 1   MSFNEINNLVVPQGYNGLRKLKSLDLSG---VGVRDGSKLLQSIGSFSSLNSLYLSSNNF 57
            SFN +  +     ++ L  L  LDL+      + +      +  S   L++L L++N  
Sbjct: 40  FSFNVLPTIQ-NTTFSRLINLTFLDLTRCQIYWIHED-----TFQSQHRLDTLVLTANPL 93

Query: 58  TETVTITTQELHNFTNMEYLKLDDSPLHISLLQSIASIFPLLKNLSMIGCEVNG--VIRG 115
                +    L     +++L          +           K L  +    N    I+ 
Sbjct: 94  I---FMAETALSGPKALKHLFFI----QTGISSIDFIPLHNQKTLESLYLGSNHISSIKL 146

Query: 116 QDFPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSLSYYTLGINSSETLNQGLCS 175
                ++ L+ LD +      N +   +  E MSSL+  +     L  N    +  G   
Sbjct: 147 PKGFPTEKLKVLDFQ------NNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFD 200

Query: 176 LVHLQELYIASNDLRGSLPWCMAN--MTSLRILD 207
               Q L          +   + N  + SL +  
Sbjct: 201 SAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGT 234

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 45.0 bits (107), Expect = 7e-06
 Identities = 25/166 (15%), Positives = 47/166 (28%), Gaps = 16/166 (9%)

Query: 44  FSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDDSPLHISLLQSIA-SIFPLLKNL 102
            +S   L  S N       I         N+ +L L      I  +          L  L
Sbjct: 32  PNSTECLEFSFNVLPT---IQNTTFSRLINLTFLDLTRC--QIYWIHEDTFQSQHRLDTL 86

Query: 103 SMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIA-LNTSFLQIISESMSSLKYLSLSYYTL 161
            +    +  +         K+L+HL      I+ ++   L     +  +L+ L L    +
Sbjct: 87  VLTANPLIFMAETA-LSGPKALKHLFFIQTGISSIDFIPLH----NQKTLESLYLGSNHI 141

Query: 162 GINSSETLNQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILD 207
                            L+ L   +N +       M+++     L 
Sbjct: 142 SSIKLPKGFP----TEKLKVLDFQNNAIHYLSKEDMSSLQQATNLS 183

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 40.8 bits (96), Expect = 1e-04
 Identities = 36/193 (18%), Positives = 65/193 (33%), Gaps = 38/193 (19%)

Query: 1   MSFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTET 60
           ++F  +        +  L  LK L+LS   +   S+  Q      +L  L L  N+F + 
Sbjct: 407 LAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSE--QLFDGLPALQHLNLQGNHFPKG 464

Query: 61  VTITTQELHNFTNMEYLKLDDSPLHISLLQSIASIFPLLKNLSMIGCEVNGVIRGQDFPH 120
               T  L     +E L L                           C+++ + +   F  
Sbjct: 465 NIQKTNSLQTLGRLEILVLS-------------------------FCDLSSIDQH-AFTS 498

Query: 121 SKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSLSYYTLGINSSETLNQG-LCSLVHL 179
            K + H+D+   R+           E++S LK + L+   L  N    +    L  L   
Sbjct: 499 LKMMNHVDLSHNRLT------SSSIEALSHLKGIYLN---LASNHISIILPSLLPILSQQ 549

Query: 180 QELYIASNDLRGS 192
           + + +  N L  +
Sbjct: 550 RTINLRQNPLDCT 562

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 39.6 bits (93), Expect = 5e-04
 Identities = 27/209 (12%), Positives = 61/209 (29%), Gaps = 20/209 (9%)

Query: 2   SFNEINNLVVPQGYNGLRKLKSLDLSG---VGVRDGSKLLQSIGSFSSLNSLYLSSNNFT 58
           +  +I  +     +    +L +L L+    + + + +     +    +L  L+      +
Sbjct: 65  TRCQIYWIH-EDTFQSQHRLDTLVLTANPLIFMAETA-----LSGPKALKHLFFIQTGIS 118

Query: 59  ETVTITTQELHNFTNMEYLKLDDSPLHISLLQSIASIFPLLKNLSMIGCEVNGVIRGQDF 118
               I    LHN   +E L L  + +    L         LK L      ++  +  +D 
Sbjct: 119 S---IDFIPLHNQKTLESLYLGSNHISSIKLPKGFP-TEKLKVLDFQNNAIHY-LSKEDM 173

Query: 119 PHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYL-SLSYYTLGINSSETLNQGLCSLV 177
              +   +L      + LN + +  I           SL++                ++ 
Sbjct: 174 SSLQQATNLS-----LNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQ 228

Query: 178 HLQELYIASNDLRGSLPWCMANMTSLRIL 206
            L        D     P     +  + + 
Sbjct: 229 SLWLGTFEDMDDEDISPAVFEGLCEMSVE 257

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 61.2 bits (149), Expect = 2e-11
 Identities = 47/202 (23%), Positives = 67/202 (33%), Gaps = 13/202 (6%)

Query: 7   NNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQ 66
           N          L  L+ LDLS  G+       QS    +SL  L LS N         + 
Sbjct: 335 NKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITM----SS 390

Query: 67  ELHNFTNMEYLKLDDSPLHISLLQSIASIFPLLKNLSMIGCEVNGVIRGQDFPHSKSLEH 126
                  +E+L    S L      S+      L  L +          G  F    SLE 
Sbjct: 391 NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG-IFNGLSSLEV 449

Query: 127 LDMEFMRIALNTSFLQIISESMSSLKYLSLSYYTLGINS-SETLNQGLCSLVHLQELYIA 185
           L M         +FL  I   + +L +L LS          +       SL  LQ L ++
Sbjct: 450 LKMAGNS--FQENFLPDIFTELRNLTFLDLSQ-----CQLEQLSPTAFNSLSSLQVLNMS 502

Query: 186 SNDLRGSLPWCMANMTSLRILD 207
            N+      +    + SL++LD
Sbjct: 503 HNNFFSLDTFPYKCLNSLQVLD 524

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 57.0 bits (138), Expect = 6e-10
 Identities = 38/210 (18%), Positives = 81/210 (38%), Gaps = 16/210 (7%)

Query: 1   MSFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTET 60
           +SFN + +L     +    +L+ LDLS   ++       +  S S L++L L+ N     
Sbjct: 35  LSFNPLRHLG-SYSFFSFPELQVLDLSRCEIQTIED--GAYQSLSHLSTLILTGNPIQ-- 89

Query: 61  VTITTQELHNFTNMEYLKLDDSPLHISLLQSIASIFPLLKNLSMIGCEVNGVIRGQDFPH 120
            ++        ++++ L   ++ L       I  +   LK L++    +      + F +
Sbjct: 90  -SLALGAFSGLSSLQKLVAVETNLASLENFPIGHL-KTLKELNVAHNLIQSFKLPEYFSN 147

Query: 121 SKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSLSYYTL--GINSSETLNQGLCSLVH 178
             +LEHLD+       +     I    +  L  + L   +L   +N    +  G    + 
Sbjct: 148 LTNLEHLDLS------SNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR 201

Query: 179 LQELYIASNDLRGSLP-WCMANMTSLRILD 207
           L +L + +N    ++   C+  +  L +  
Sbjct: 202 LHKLTLRNNFDSLNVMKTCIQGLAGLEVHR 231

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 54.3 bits (131), Expect = 5e-09
 Identities = 29/211 (13%), Positives = 65/211 (30%), Gaps = 11/211 (5%)

Query: 1   MSFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTET 60
                + +L        L+ LK L+++   ++   KL +   + ++L  L LSSN     
Sbjct: 107 AVETNLASLE-NFPIGHLKTLKELNVAHNLIQ-SFKLPEYFSNLTNLEHLDLSSNKIQS- 163

Query: 61  VTITTQELHNFTNMEYLKLDDSPLHISLLQSIASIFPL--LKNLSMIGCEVNGVIRGQDF 118
             I   +L     M  L L        +       F    L  L++     +  +     
Sbjct: 164 --IYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCI 221

Query: 119 PHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSLSYYTLGIN--SSETLNQGLCSL 176
                LE   +         +  +    ++  L  L++  + L       + +      L
Sbjct: 222 QGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCL 281

Query: 177 VHLQELYIASNDLRGSLPWCMANMTSLRILD 207
            ++    + S  +     +  +     + L+
Sbjct: 282 TNVSSFSLVSVTIERVKDF--SYNFGWQHLE 310

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 51.2 bits (123), Expect = 6e-08
 Identities = 33/207 (15%), Positives = 66/207 (31%), Gaps = 21/207 (10%)

Query: 2   SFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETV 61
           ++ +     +   +N L  + S  L  V +      ++          L L +  F +  
Sbjct: 265 AYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER----VKDFSYNFGWQHLELVNCKFGQ-- 318

Query: 62  TITTQELHNFTNMEYLKLDDSPLHISLLQSIASIFPLLK-NLSMIGCEVNGVIRGQDFPH 120
                           +L  +        S   +  L   +LS  G    G         
Sbjct: 319 ------FPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQS-DFG 371

Query: 121 SKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSLSYYTLGINSSETLNQGLCSLVHLQ 180
           + SL++LD+ F  +      +      +  L++L   +  L   S  ++     SL +L 
Sbjct: 372 TTSLKYLDLSFNGV----ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSV---FLSLRNLI 424

Query: 181 ELYIASNDLRGSLPWCMANMTSLRILD 207
            L I+    R +       ++SL +L 
Sbjct: 425 YLDISHTHTRVAFNGIFNGLSSLEVLK 451

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 47.7 bits (114), Expect = 8e-07
 Identities = 29/166 (17%), Positives = 62/166 (37%), Gaps = 17/166 (10%)

Query: 44  FSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDDSPLHISLLQSIASIFPLLKNLS 103
             S  +L LS N       + +    +F  ++ L L        +       +  L +LS
Sbjct: 27  PFSTKNLDLSFNPLRH---LGSYSFFSFPELQVLDLSRC----EIQTIEDGAYQSLSHLS 79

Query: 104 MI---GCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSLSYYT 160
            +   G  +  +  G  F    SL+ L      +    S        + +LK L++++  
Sbjct: 80  TLILTGNPIQSLALG-AFSGLSSLQKLVAVETNL---ASLENFPIGHLKTLKELNVAHNL 135

Query: 161 LGINSSETLNQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRIL 206
           +    S  L +   +L +L+ L ++SN ++      +  +  + +L
Sbjct: 136 I---QSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLL 178

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 42.7 bits (101), Expect = 3e-05
 Identities = 46/255 (18%), Positives = 82/255 (32%), Gaps = 54/255 (21%)

Query: 1   MSFNEINNLVVPQGYNGLRKLKSLDLSG---VGVRDGS---------------------- 35
           ++ N I +  +P+ ++ L  L+ LDLS      +                          
Sbjct: 131 VAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN 190

Query: 36  KLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDDSPLHISLLQSIASI 95
            +         L+ L L +N  +  V  T  +      +  L L +     +L +   S 
Sbjct: 191 FIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSA 250

Query: 96  FPLLKNLSMIGCEVNGVIRGQD-----FPHSKSLEHLDMEFMRIA--------------- 135
              L NL++    +  +    D     F    ++    +  + I                
Sbjct: 251 LEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLE 310

Query: 136 -LNTSFLQIISESMSSLKYLSLSYYTLGINSSETLNQGLCSLVHLQELYIASNDL--RGS 192
            +N  F Q  +  + SLK L+ +    G   SE        L  L+ L ++ N L  +G 
Sbjct: 311 LVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEV------DLPSLEFLDLSRNGLSFKGC 364

Query: 193 LPWCMANMTSLRILD 207
                   TSL+ LD
Sbjct: 365 CSQSDFGTTSLKYLD 379

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 41.6 bits (98), Expect = 8e-05
 Identities = 34/161 (21%), Positives = 57/161 (35%), Gaps = 14/161 (8%)

Query: 1   MSFNEINNLVVPQGYNGLRKLKSLDLSG---VGVRDGSKLLQSIGSFSSLNSLYLSSNNF 57
              + +  +     +  LR L  LD+S        +G          SSL  L ++ N+F
Sbjct: 403 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG-----IFNGLSSLEVLKMAGNSF 457

Query: 58  TETVTITTQELHNFTNMEYLKLDDSPLHISLLQSIASIFPLLKNLSMIGCEVNGVIRGQD 117
            E             N+ +L L    L   L  +  +    L+ L+M       +     
Sbjct: 458 QE--NFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMSHNNFFSLDTFP- 513

Query: 118 FPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSLSY 158
           +    SL+ LD       + TS  Q +    SSL +L+L+ 
Sbjct: 514 YKCLNSLQVLDYSLNH--IMTSKKQELQHFPSSLAFLNLTQ 552

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 41.2 bits (97), Expect = 1e-04
 Identities = 22/128 (17%), Positives = 47/128 (36%), Gaps = 16/128 (12%)

Query: 84  LHISLLQSIASIFPLLKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFLQI 143
           + ++  +   ++    KNL +    +  +     F     L+ LD+             I
Sbjct: 15  MELNFYKIPDNLPFSTKNLDLSFNPLRHLGSY-SFFSFPELQVLDLS------RCEIQTI 67

Query: 144 ISES---MSSLKYLSLSYYTLGINSSETLNQG-LCSLVHLQELYIASNDLRGSLPWCMAN 199
              +   +S L  L L+      N  ++L  G    L  LQ+L     +L     + + +
Sbjct: 68  EDGAYQSLSHLSTLILTG-----NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGH 122

Query: 200 MTSLRILD 207
           + +L+ L+
Sbjct: 123 LKTLKELN 130

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 58.5 bits (142), Expect = 2e-10
 Identities = 39/218 (17%), Positives = 73/218 (33%), Gaps = 26/218 (11%)

Query: 1   MSFNEINNLVVPQGYNGLRKLKSLDLSG---VGVRDGSKLLQSIGSFSSLNSLYLSSNNF 57
           ++ N+I+ +     ++ L  L+ LDL          G           ++  +YLS N +
Sbjct: 388 LTKNKISKIE-SDAFSWLGHLEVLDLGLNEIGQELTGQ----EWRGLENIFEIYLSYNKY 442

Query: 58  TETVTITTQELHNFTNMEYLKLDDSPLHISLLQSIASIF---PLLKNLSMIGCEVNGVIR 114
                +T        +++ L L      +  + S  S F     L  L +    +  +  
Sbjct: 443 L---QLTRNSFALVPSLQRLMLRRV--ALKNVDSSPSPFQPLRNLTILDLSNNNIANIND 497

Query: 115 GQDFPHSKSLEHLDMEFMRIA-----LNTSFLQIISESMSSLKYLSLSYYTLGINSSETL 169
                  + LE LD++   +A      N        + +S L  L+L          E  
Sbjct: 498 DM-LEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVF 556

Query: 170 NQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILD 207
                 L  L+ + +  N+L         N  SL+ L+
Sbjct: 557 KD----LFELKIIDLGLNNLNTLPASVFNNQVSLKSLN 590

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 57.3 bits (139), Expect = 4e-10
 Identities = 38/217 (17%), Positives = 74/217 (34%), Gaps = 17/217 (7%)

Query: 1   MSFNEINNLVVPQGYNG--LRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFT 58
           ++  ++   +  +         +++L LS   +   S        +++L  L LS NN  
Sbjct: 202 LNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLN 261

Query: 59  ETVTITTQELHNFTNMEYLKLDD------SPLHISLLQSIASIFPLLKNLSMIGCEVNGV 112
               +          +EY  L+           +  L ++     L ++ +     +  +
Sbjct: 262 ---VVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNV-RYLNLKRSFTKQSISLASL 317

Query: 113 --IRGQDFPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSLSYYTLGINSSETLN 170
             I    F   K LEHL+ME   I         +   + +LKYLSLS     + +     
Sbjct: 318 PKIDDFSFQWLKCLEHLNMEDNDI---PGIKSNMFTGLINLKYLSLSNSFTSLRTLTNET 374

Query: 171 QGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILD 207
               +   L  L +  N +        + +  L +LD
Sbjct: 375 FVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLD 411

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 56.5 bits (137), Expect = 8e-10
 Identities = 40/247 (16%), Positives = 83/247 (33%), Gaps = 55/247 (22%)

Query: 1   MSFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQ-------SIGSFSSLNSLYLS 53
           + +N I +L      +GL  ++ L+L     +    L         S      L  L + 
Sbjct: 279 LEYNNIQHLF-SHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNME 337

Query: 54  SNNFTETVTITTQELHNFTNMEYLKLDDSPLHISLLQSIA-------------------- 93
            N+      I +       N++YL L +S   +  L +                      
Sbjct: 338 DNDIPG---IKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKIS 394

Query: 94  -------SIFPLLKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFLQIISE 146
                  S    L+ L +   E+   + GQ++   +++  + +          +LQ+   
Sbjct: 395 KIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLS------YNKYLQLTRN 448

Query: 147 S---MSSLKYLSLSYYTLGINSSETLNQG---LCSLVHLQELYIASNDLRGSLPWCMANM 200
           S   + SL+ L L        + + ++        L +L  L +++N++       +  +
Sbjct: 449 SFALVPSLQRLMLRR-----VALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGL 503

Query: 201 TSLRILD 207
             L ILD
Sbjct: 504 EKLEILD 510

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 55.0 bits (133), Expect = 3e-09
 Identities = 40/218 (18%), Positives = 79/218 (36%), Gaps = 21/218 (9%)

Query: 1   MSFNEINNLV-VPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTE 59
           +S N+I  L            LK L+LS   +++ S       +   L  L+L++     
Sbjct: 152 LSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSP--GCFHAIGRLFGLFLNNVQLGP 209

Query: 60  TVTITTQELHNFTNMEYLKLDDSPLHISLLQSIASIFPLLKNLSMI-----GCEVNGVIR 114
           ++T         T++  L L     +  L  +  + F  LK  ++         +N V  
Sbjct: 210 SLTEKLCLELANTSIRNLSLS----NSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGN 265

Query: 115 GQDFPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSLSY----YTLGINSSETLN 170
              F     LE+  +E+  I             + +++YL+L       ++ + S   ++
Sbjct: 266 DS-FAWLPQLEYFFLEYNNI---QHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKID 321

Query: 171 QGLCS-LVHLQELYIASNDLRGSLPWCMANMTSLRILD 207
                 L  L+ L +  ND+ G        + +L+ L 
Sbjct: 322 DFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLS 359

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 53.9 bits (130), Expect = 7e-09
 Identities = 38/202 (18%), Positives = 72/202 (35%), Gaps = 20/202 (9%)

Query: 1   MSFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTET 60
           +S+N+   L     +  +  L+ L L  V +++            +L  L LS+NN    
Sbjct: 437 LSYNKYLQLT-RNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIA-- 493

Query: 61  VTITTQELHNFTNMEYLKLDDSPLHI----SLLQSIASIFPLLKNLSMIGCEVNGV--IR 114
             I    L     +E L L  + L      +           L +L ++  E NG   I 
Sbjct: 494 -NINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIP 552

Query: 115 GQDFPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSLSYYTLGINSSETLNQGLC 174
            + F     L+ +D+    +    +    +  +  SLK L+L       N   ++ + + 
Sbjct: 553 VEVFKDLFELKIIDLGLNNL---NTLPASVFNNQVSLKSLNLQK-----NLITSVEKKVF 604

Query: 175 --SLVHLQELYIASNDLRGSLP 194
             +  +L EL +  N    +  
Sbjct: 605 GPAFRNLTELDMRFNPFDCTCE 626

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 53.1 bits (128), Expect = 1e-08
 Identities = 40/230 (17%), Positives = 75/230 (32%), Gaps = 30/230 (13%)

Query: 1   MSFNEINNLVVPQGYNGLRKLKSLDLSG-------VGVRDGSKLLQ-------------- 39
           + FN I+ L  P+    L  LK L+L                  L               
Sbjct: 56  VGFNTISKLE-PELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKN 114

Query: 40  -SIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDDSPLHISLLQSIASIFPL 98
                  +L +L LS N  +   +          N++ L L ++ +     + +      
Sbjct: 115 NPFVKQKNLITLDLSHNGLS---STKLGTQVQLENLQELLLSNNKIQALKSEELDIFANS 171

Query: 99  -LKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSLS 157
            LK L +   ++     G  F     L  L +  +++  + +    +  + +S++ LSLS
Sbjct: 172 SLKKLELSSNQIKEFSPG-CFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLS 230

Query: 158 YYTLGINSSETLNQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILD 207
              L   S+ T         +L  L ++ N+L        A +  L    
Sbjct: 231 NSQLSTTSNTTF--LGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFF 278

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 52.7 bits (127), Expect = 2e-08
 Identities = 33/213 (15%), Positives = 79/213 (37%), Gaps = 20/213 (9%)

Query: 1   MSFNEINNLVVPQGYNGLRKLKSLDLSG---VGVRDGSKLLQSIGSFSSLNSLYLSSNNF 57
           +  N I  +     +   + L +LDLS       + G+          +L  L LS+N  
Sbjct: 104 LMSNSIQKIK-NNPFVKQKNLITLDLSHNGLSSTKLGT-----QVQLENLQELLLSNNKI 157

Query: 58  TETVTITTQELHNFTNMEYLKLDDSPLHISLLQSIASIFPLLKNLSMIGCEVNGVIRGQD 117
               +       N ++++ L+L  + +         +I   L  L +   ++   +  + 
Sbjct: 158 QALKSEELDIFAN-SSLKKLELSSNQIKEFSPGCFHAI-GRLFGLFLNNVQLGPSLTEKL 215

Query: 118 FP--HSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSLSYYTLGINS-SETLNQGLC 174
                + S+ +L +       N+      + +   LK+ +L+   L  N+ +   N    
Sbjct: 216 CLELANTSIRNLSLS------NSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFA 269

Query: 175 SLVHLQELYIASNDLRGSLPWCMANMTSLRILD 207
            L  L+  ++  N+++      +  + ++R L+
Sbjct: 270 WLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLN 302

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 46.5 bits (111), Expect = 2e-06
 Identities = 37/210 (17%), Positives = 73/210 (34%), Gaps = 16/210 (7%)

Query: 1   MSFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTET 60
           ++ N++  L     +    +L SLD+    +       +       L  L L  N  ++ 
Sbjct: 32  LTHNQLRRLP-AANFTRYSQLTSLDVGFNTISKLEP--ELCQKLPMLKVLNLQHNELSQ- 87

Query: 61  VTITTQELHNFTNMEYLKLDDSPLHISLLQSIASIFPLLKNLSMIGCEVNGVIRGQDFPH 120
             ++ +     TN+  L L  + +              L  L +    ++    G     
Sbjct: 88  --LSDKTFAFCTNLTELHLMSNSIQKIKNNPFVK-QKNLITLDLSHNGLSSTKLGT-QVQ 143

Query: 121 SKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSLSYYTLGINSSETLNQGLCSLVHLQ 180
            ++L+ L +   +I       ++   + SSLK L LS   +   S    +    ++  L 
Sbjct: 144 LENLQELLLSNNKIQ-ALKSEELDIFANSSLKKLELSSNQIKEFSPGCFH----AIGRLF 198

Query: 181 ELYIASNDLRGSLPW---CMANMTSLRILD 207
            L++ +  L  SL          TS+R L 
Sbjct: 199 GLFLNNVQLGPSLTEKLCLELANTSIRNLS 228

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 39.6 bits (93), Expect = 4e-04
 Identities = 21/190 (11%), Positives = 52/190 (27%), Gaps = 47/190 (24%)

Query: 21  LKSLDLSGVGVRDGSKLLQSI--GSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLK 78
            +  D S +        L  +     +++  L L+ N       +       ++ +  L 
Sbjct: 6   HEVADCSHLK-------LTQVPDDLPTNITVLNLTHNQLRR---LPAANFTRYSQLTSLD 55

Query: 79  LDDSPLHISLLQSIASIFPLLKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNT 138
           +                             ++ +           L+ L+++   +   +
Sbjct: 56  VG-------------------------FNTISKLEPEL-CQKLPMLKVLNLQHNEL---S 86

Query: 139 SFLQIISESMSSLKYLSLSYYTLGINS-SETLNQGLCSLVHLQELYIASNDLRGSLPWCM 197
                     ++L  L L       NS  +  N       +L  L ++ N L  +     
Sbjct: 87  QLSDKTFAFCTNLTELHLMS-----NSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQ 141

Query: 198 ANMTSLRILD 207
             + +L+ L 
Sbjct: 142 VQLENLQELL 151

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 58.2 bits (140), Expect = 2e-10
 Identities = 45/209 (21%), Positives = 81/209 (38%), Gaps = 35/209 (16%)

Query: 1   MSFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTET 60
           +    + + V     N L  +  +  +   ++     +Q I    ++  L+L+ N  T+ 
Sbjct: 28  LKKKSVTDAV---TQNELNSIDQIIANNSDIKS----VQGIQYLPNVTKLFLNGNKLTD- 79

Query: 61  VTITTQELHNFTNMEYLKLDDSPLHISLLQSIASIFPL--LKNLSMIGCEVNGVIRGQDF 118
                + L N  N+ +L LD+          I  +  L  LK L  +  E NG+      
Sbjct: 80  ----IKPLTNLKNLGWLFLDE--------NKIKDLSSLKDLKKLKSLSLEHNGISDINGL 127

Query: 119 PHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSLSYYTLGINSSETLNQGLCSLVH 178
            H   LE L +   +I  + + L      ++ L  LSL       N    +   L  L  
Sbjct: 128 VHLPQLESLYLGNNKIT-DITVL----SRLTKLDTLSLED-----NQISDI-VPLAGLTK 176

Query: 179 LQELYIASNDLRGSLPWCMANMTSLRILD 207
           LQ LY++ N +   L   +A + +L +L+
Sbjct: 177 LQNLYLSKNHIS-DLR-ALAGLKNLDVLE 203

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 45.5 bits (107), Expect = 4e-06
 Identities = 44/183 (24%), Positives = 71/183 (38%), Gaps = 18/183 (9%)

Query: 1   MSFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTET 60
           +  N+I +L        L+KLKSL L   G+ D    +  +     L SLYL +N  T+ 
Sbjct: 94  LDENKIKDL---SSLKDLKKLKSLSLEHNGISD----INGLVHLPQLESLYLGNNKITD- 145

Query: 61  VTITTQELHNFTNMEYLKLDDSPLHISLLQSIASIFPLLKNLSMIGCEVNGVIRGQDFPH 120
             IT   L   T ++ L L+D+   IS +  +A     L  L  +    N +   +    
Sbjct: 146 --ITV--LSRLTKLDTLSLEDN--QISDIVPLAG----LTKLQNLYLSKNHISDLRALAG 195

Query: 121 SKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSLSYYTLGINSSETLNQGLCSLVHLQ 180
            K+L+ L++            Q      +++K    S  T  I S +   +      HL 
Sbjct: 196 LKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLP 255

Query: 181 ELY 183
           E  
Sbjct: 256 EFT 258

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 56.6 bits (137), Expect = 7e-10
 Identities = 35/209 (16%), Positives = 65/209 (31%), Gaps = 16/209 (7%)

Query: 1   MSFNEINNLVVPQGYN-GLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTE 59
           +S N ++        + G   L+ LDLS  G    S    +      L  L    +    
Sbjct: 357 LSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSA---NFMGLEELQHLDFQHSTLKR 413

Query: 60  TVTITTQELHNFTNMEYLKLDDSPLHISLLQSIASIFPLLKNLSMIGCEVNGVIRGQDFP 119
                     +   + YL +  +         I      L  L M G           F 
Sbjct: 414 V--TEFSAFLSLEKLLYLDISYTNTK-IDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFA 470

Query: 120 HSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSLSYYTLGINSSETLNQG-LCSLVH 178
           ++ +L  LD+   ++         + +++  L+ L++S+     N+   L+      L  
Sbjct: 471 NTTNLTFLDLSKCQL---EQISWGVFDTLHRLQLLNMSH-----NNLLFLDSSHYNQLYS 522

Query: 179 LQELYIASNDLRGSLPWCMANMTSLRILD 207
           L  L  + N +  S         SL   +
Sbjct: 523 LSTLDCSFNRIETSKGILQHFPKSLAFFN 551

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 49.3 bits (118), Expect = 3e-07
 Identities = 33/208 (15%), Positives = 71/208 (34%), Gaps = 22/208 (10%)

Query: 1   MSFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTET 60
           +++    +      ++ L  + ++ L+GV ++     L+ +       SL +        
Sbjct: 268 LTYTNDFSDD-IVKFHCLANVSAMSLAGVSIKY----LEDVPKHFKWQSLSIIRCQ---- 318

Query: 61  VTITTQELHNFTNMEYLKLDDSPLHISLLQSIASIFPLLKNLSMIGCEVNGVIRGQ-DFP 119
             +      +   ++ L L  +    S+     +  P L  L +    ++          
Sbjct: 319 --LKQFPTLDLPFLKSLTLTMN--KGSISFKKVA-LPSLSYLDLSRNALSFSGCCSYSDL 373

Query: 120 HSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSLSYYTLGINSSETLNQGLCSLVHL 179
            + SL HLD+ F    + ++        +  L++L   + TL      T      SL  L
Sbjct: 374 GTNSLRHLDLSFNGAIIMSANFM----GLEELQHLDFQHSTL---KRVTEFSAFLSLEKL 426

Query: 180 QELYIASNDLRGSLPWCMANMTSLRILD 207
             L I+  + +         +TSL  L 
Sbjct: 427 LYLDISYTNTKIDFDGIFLGLTSLNTLK 454

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 48.5 bits (116), Expect = 5e-07
 Identities = 33/213 (15%), Positives = 72/213 (33%), Gaps = 24/213 (11%)

Query: 1   MSFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKL-LQSIGSFSSL-----NSLYLSS 54
           +  N  ++ ++      L  L    L     +D   L +        L     +   L+ 
Sbjct: 211 LRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTY 270

Query: 55  NNFTETVTITTQELHNFTNMEYLKLDDSPLHISLLQSIASIFPLLKNLSMIGCEVNGVIR 114
            N     +    + H   N+  + L    + I  L+ +       ++LS+I C++     
Sbjct: 271 TNDF---SDDIVKFHCLANVSAMSLAG--VSIKYLEDVPK-HFKWQSLSIIRCQLKQF-- 322

Query: 115 GQDFPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSLSYYTLGINSSETLNQGLC 174
                    L+ L +   + +++   +     ++ SL YL LS     ++ S   +    
Sbjct: 323 --PTLDLPFLKSLTLTMNKGSISFKKV-----ALPSLSYLDLSR--NALSFSGCCSYSDL 373

Query: 175 SLVHLQELYIASNDLRGSLPWCMANMTSLRILD 207
               L+ L ++ N     +      +  L+ LD
Sbjct: 374 GTNSLRHLDLSFNGAI-IMSANFMGLEELQHLD 405

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 45.0 bits (107), Expect = 6e-06
 Identities = 36/209 (17%), Positives = 69/209 (33%), Gaps = 21/209 (10%)

Query: 2   SFNEINNLVV--PQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTE 59
            F +  NL +  P    GL  +   +       D S  +      ++++++ L+  +   
Sbjct: 240 EFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIK- 298

Query: 60  TVTITTQELHNFTNMEYLKLDDSPLHISLLQSIASIFPLLKNLSMIGCEVNGVIRGQDFP 119
                 +++      + L +        L Q      P LK+L++     N         
Sbjct: 299 ----YLEDVPKHFKWQSLSII----RCQLKQFPTLDLPFLKSLTLTM---NKGSISFKKV 347

Query: 120 HSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSLSYYTLGINSSETLNQGLCSLVHL 179
              SL +LD+    ++           S S L   SL +  L  N +  ++     L  L
Sbjct: 348 ALPSLSYLDLSRNALS------FSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEEL 401

Query: 180 QELYIASNDLRGSLP-WCMANMTSLRILD 207
           Q L    + L+         ++  L  LD
Sbjct: 402 QHLDFQHSTLKRVTEFSAFLSLEKLLYLD 430

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 43.5 bits (103), Expect = 2e-05
 Identities = 30/171 (17%), Positives = 59/171 (34%), Gaps = 14/171 (8%)

Query: 40  SIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDDSPLHISLLQSIASIFPLL 99
           S  +FS L  L LS        TI  +  H   ++  L L  +P+      S +     L
Sbjct: 51  SFSNFSELQWLDLSRCEIE---TIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSG-LTSL 106

Query: 100 KNLSMIGCEVNGVIRGQDFPHSKSLEHLDME---FMRIALNTSFLQIISESMSSLKYLSL 156
           +NL  +  ++  +          +L+ L++         L   F      ++++L ++ L
Sbjct: 107 ENLVAVETKLASLESFP-IGQLITLKKLNVAHNFIHSCKLPAYF-----SNLTNLVHVDL 160

Query: 157 SYYTLGINSSETLNQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILD 207
           SY  +   +   L     +      L ++ N +          +  L  L 
Sbjct: 161 SYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELT 210

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 42.3 bits (100), Expect = 6e-05
 Identities = 37/237 (15%), Positives = 73/237 (30%), Gaps = 47/237 (19%)

Query: 2   SFNEINNLVVPQGYNGLRKLKSLDLSG-----------VGVRDGSKLLQSI--------- 41
           + N I++  +P  ++ L  L  +DLS              +R+  ++  S+         
Sbjct: 136 AHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDF 195

Query: 42  ---GSFSSLN--SLYLSSNNFTETVTITTQELHNFTNMEYLKLDDSPL--HISLLQSIAS 94
               +F  +    L L  N    +  I    L N   +   +L         +L     S
Sbjct: 196 IQDQAFQGIKLHELTLRGNFN--SSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPS 253

Query: 95  IFPLLKNLSMIGCEVNG----VIRGQDFPHSKSLEHLDMEFMRIALNTSFLQIISESMSS 150
           I   L ++++    +            F    ++  + +  + I       +        
Sbjct: 254 IMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPK-----HFK 308

Query: 151 LKYLSLSYYTLGINSSETLNQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILD 207
            + LS+      +    TL+     L  L+ L +  N    S       + SL  LD
Sbjct: 309 WQSLSIIR--CQLKQFPTLD-----LPFLKSLTLTMNKGSISFKK--VALPSLSYLD 356

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 56.4 bits (136), Expect = 1e-09
 Identities = 26/210 (12%), Positives = 73/210 (34%), Gaps = 26/210 (12%)

Query: 16  NGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNME 75
           +   ++  L L+G G +   ++  +IG  + L  L   +++ T +  +   E        
Sbjct: 320 DNNGRVTGLSLAGFGAK--GRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELT----- 372

Query: 76  YLKLDDSPLHISLLQSIASIFPLLKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIA 135
              + +   H   +          + L++     + + R  +    K    + ++  +I 
Sbjct: 373 -PDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIG 431

Query: 136 LNTSFLQIISES---MSSLKYLSLSY---------------YTLGINSSETLNQGLCSLV 177
             T+ +  IS++   ++ L+ +  +                 +      E       +L 
Sbjct: 432 NLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLK 491

Query: 178 HLQELYIASNDLRGSLPWCMANMTSLRILD 207
            L ++ + +      LP  + ++  L+ L+
Sbjct: 492 DLTDVELYNCPNMTQLPDFLYDLPELQSLN 521

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 51.4 bits (123), Expect = 4e-08
 Identities = 23/211 (10%), Positives = 70/211 (33%), Gaps = 18/211 (8%)

Query: 7   NNL--VVPQGYNGLRKLKSLDLSG-------VGVRDGSKLLQSIGSFSSLNSLYLSSNNF 57
                 +P     L +L+SL+++            D ++L     +   +   Y+  NN 
Sbjct: 501 CPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNL 560

Query: 58  TETVTITTQELHNFTNMEYLKLDDSPLHISLLQSIASIFPLLKNLSMIGCEVNGVIRGQD 117
            E     +  L     +  L    +   +  L++  +    L +L +   ++  +     
Sbjct: 561 EEF--PASASLQKMVKLGLLDCVHN--KVRHLEAFGT-NVKLTDLKLDYNQIEEIPEDF- 614

Query: 118 FPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSLSYYTL-GINSSETLNQGLCSL 176
              +  +E L     ++    +      +S+  +  +  SY  +     + + +      
Sbjct: 615 CAFTDQVEGLGFSHNKLKYIPNIFNA--KSVYVMGSVDFSYNKIGSEGRNISCSMDDYKG 672

Query: 177 VHLQELYIASNDLRGSLPWCMANMTSLRILD 207
           ++   + ++ N+++       A  + +  + 
Sbjct: 673 INASTVTLSYNEIQKFPTELFATGSPISTII 703

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 49.1 bits (117), Expect = 3e-07
 Identities = 24/187 (12%), Positives = 52/187 (27%), Gaps = 26/187 (13%)

Query: 40  SIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDDSPLHISLLQSIASIFPLL 99
            + +   +  L L+       V      +   T ++ L        +S            
Sbjct: 318 DLDNNGRVTGLSLAGFGAKGRVPD---AIGQLTELKVLSFGTHSETVSGRLFGDEELTPD 374

Query: 100 KNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSLSYY 159
            +       +    +     + + L   D+    I  N     I  +S  SLK   +   
Sbjct: 375 MSEERKH-RIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNL 433

Query: 160 TLGINSSETLNQGLCSLVHLQELYIASNDLRG-------------------SLPWCMANM 200
           T   N    +++ +  L  LQ +Y A++                       +     +N+
Sbjct: 434 T---NRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNL 490

Query: 201 TSLRILD 207
             L  ++
Sbjct: 491 KDLTDVE 497

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 49.1 bits (117), Expect = 3e-07
 Identities = 32/219 (14%), Positives = 70/219 (31%), Gaps = 25/219 (11%)

Query: 2   SFNEINNLVVPQGYNGLRKLKSLDLSG---VGVRDGSKLLQSIGSFSSLNSLYLSSNNFT 58
           S N++  +        +  + S+D S                     + +++ LS N   
Sbjct: 627 SHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ 686

Query: 59  ETVTITTQELHNFTNMEYLKLDD---SPLHISLLQSIASIFPLLKNLSMI---GCEVNGV 112
                 T+     + +  + L +   + +  + L+     +     L+ I     ++  +
Sbjct: 687 ---KFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSL 743

Query: 113 IRGQDFPHSKSLEHLDMEFMRIALNTSFLQIISE--SMSSLKYLSLSYYTL--GINSSET 168
                      L ++D+          F    ++  + S LK   + +     G      
Sbjct: 744 SDDFRATTLPYLSNMDVS------YNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQ 797

Query: 169 LNQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILD 207
              G+ +   L +L I SND+R  +   +     L ILD
Sbjct: 798 WPTGITTCPSLIQLQIGSNDIR-KVDEKL--TPQLYILD 833

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 45.3 bits (107), Expect = 5e-06
 Identities = 23/177 (12%), Positives = 47/177 (26%), Gaps = 22/177 (12%)

Query: 40  SIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDDSPLHISLLQSIASIFPLL 99
            +     LN   L  +       +   +  +  +++  ++ +    I+    I+     L
Sbjct: 391 FLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRIT---FISKAIQRL 447

Query: 100 KNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSLSYY 159
             L +I            F +       +      A      ++   ++  L  + L   
Sbjct: 448 TKLQIIY------FANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNC 501

Query: 160 TLGINSSETLNQGLCSLVHLQELYIASNDLRG---------SLPWCMANMTSLRILD 207
                +   L   L  L  LQ L IA N              L         ++I  
Sbjct: 502 ----PNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFY 554

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 54.2 bits (131), Expect = 4e-09
 Identities = 38/199 (19%), Positives = 68/199 (34%), Gaps = 28/199 (14%)

Query: 18  LRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYL 77
                +L+L  V +    +        S L  + + +    E        +  F  +E L
Sbjct: 80  QPGRVALELRSVPL---PQFPDQAFRLSHLQHMTIDAAGLMEL----PDTMQQFAGLETL 132

Query: 78  KLDDSPLHISLLQSIASIFPLLKNLSMIGC--------EVNGVIRGQDFPHSKSLEHLDM 129
            L  +PL  +L  SIAS    L+ LS+  C         +       +     +L+ L +
Sbjct: 133 TLARNPLR-ALPASIAS-LNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRL 190

Query: 130 EFMRI-ALNTSFLQIISESMSSLKYLSLSYYTLGINSSETLNQGLCSLVHLQELYIASND 188
           E+  I +L  S       ++ +LK L +       +    L   +  L  L+EL +    
Sbjct: 191 EWTGIRSLPASI-----ANLQNLKSLKIRN-----SPLSALGPAIHHLPKLEELDLRGCT 240

Query: 189 LRGSLPWCMANMTSLRILD 207
              + P        L+ L 
Sbjct: 241 ALRNYPPIFGGRAPLKRLI 259

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 48.8 bits (117), Expect = 3e-07
 Identities = 41/225 (18%), Positives = 78/225 (34%), Gaps = 46/225 (20%)

Query: 1   MSFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTET 60
           +    +  L  P        L++L L+   +R    L  SI S + L  L + +      
Sbjct: 111 IDAAGLMEL--PDTMQQFAGLETLTLARNPLR---ALPASIASLNRLRELSIRACPELTE 165

Query: 61  V------TITTQELHNFTNMEYLKLDDSPLH-----ISLLQSIASIFPLLKNLSMIGCEV 109
           +      T  + E     N++ L+L+ + +      I+ LQ+       LK+L +    +
Sbjct: 166 LPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQN-------LKSLKIRNSPL 218

Query: 110 NGVIRGQDFPHS----KSLEHLDMEFMRIALNTSFLQIISES---MSSLKYLSLSYYTLG 162
                      +      LE LD+         + L+         + LK L L      
Sbjct: 219 ------SALGPAIHHLPKLEELDLR------GCTALRNYPPIFGGRAPLKRLILK----D 262

Query: 163 INSSETLNQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILD 207
            ++  TL   +  L  L++L +        LP  +A + +  I+ 
Sbjct: 263 CSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIIL 307

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 54.4 bits (131), Expect = 4e-09
 Identities = 46/216 (21%), Positives = 75/216 (34%), Gaps = 34/216 (15%)

Query: 1   MSFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSI--GSFS---SLNSLYLSSN 55
           +  N I  +     +NGL  L +L+L           L  I  G+F     L  L+L +N
Sbjct: 106 LGRNSIRQIE-VGAFNGLASLNTLELF-------DNWLTVIPSGAFEYLSKLRELWLRNN 157

Query: 56  NFTETVTITTQELHNFTNMEYLKLDDSPLHISLLQSIASIFPLLKNLSMIGCEVNGVIRG 115
                 +I +   +   ++  L L +    +  +      F  L NL  +   +  +   
Sbjct: 158 PIE---SIPSYAFNRVPSLMRLDLGELK-KLEYIS--EGAFEGLFNLKYLNLGMCNIKDM 211

Query: 116 QDFPHSKSLEHLDMEFMRIAL--NTSFLQIISESMSSLKYLSLSYYTLGINSSETLNQG- 172
            +      LE L+M           SF       +SSLK L +       +    + +  
Sbjct: 212 PNLTPLVGLEELEMSGNHFPEIRPGSF-----HGLSSLKKLWVMN-----SQVSLIERNA 261

Query: 173 LCSLVHLQELYIASNDLRGSLPW-CMANMTSLRILD 207
              L  L EL +A N+L  SLP      +  L  L 
Sbjct: 262 FDGLASLVELNLAHNNLS-SLPHDLFTPLRYLVELH 296

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 54.0 bits (130), Expect = 5e-09
 Identities = 40/213 (18%), Positives = 78/213 (36%), Gaps = 28/213 (13%)

Query: 1   MSFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSI--GSF---SSLNSLYLSSN 55
           +  N I  +     +  L  L+ L L           ++ I  G+F   +SLN+L L  N
Sbjct: 82  LMENNIQMIQ-ADTFRHLHHLEVLQLG-------RNSIRQIEVGAFNGLASLNTLELFDN 133

Query: 56  NFTETVTITTQELHNFTNMEYLKLDDSPLHISLLQSIASIFPLLKNLSMIGCEVNGVIRG 115
             T    I +      + +  L L ++P+  S+     +  P L  L +   +    I  
Sbjct: 134 WLT---VIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISE 189

Query: 116 QDFPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSLSYYTLGINSSETLNQG-LC 174
             F    +L++L++    I    +        +  L+ L +S      N    +  G   
Sbjct: 190 GAFEGLFNLKYLNLGMCNIKDMPNL-----TPLVGLEELEMSG-----NHFPEIRPGSFH 239

Query: 175 SLVHLQELYIASNDLRGSLPWCMANMTSLRILD 207
            L  L++L++ ++ +          + SL  L+
Sbjct: 240 GLSSLKKLWVMNSQVSLIERNAFDGLASLVELN 272

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 42.0 bits (99), Expect = 6e-05
 Identities = 34/167 (20%), Positives = 61/167 (36%), Gaps = 19/167 (11%)

Query: 44  FSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDDSPLHISLLQSIASIFPLLKNLS 103
            S+   L L  NN      I      +  ++E L+L  +   I  ++  A  F  L +L+
Sbjct: 74  PSNTRYLNLMENNIQM---IQADTFRHLHHLEVLQLGRN--SIRQIEVGA--FNGLASLN 126

Query: 104 MIGCEVN--GVIRGQDFPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSLSYYTL 161
            +    N   VI    F +   L  L +    I    S        + SL  L L     
Sbjct: 127 TLELFDNWLTVIPSGAFEYLSKLRELWLRNNPI---ESIPSYAFNRVPSLMRLDLGEL-- 181

Query: 162 GINSSETLNQG-LCSLVHLQELYIASNDLRGSLPWCMANMTSLRILD 207
                E +++G    L +L+ L +   +++  +P  +  +  L  L+
Sbjct: 182 --KKLEYISEGAFEGLFNLKYLNLGMCNIK-DMPN-LTPLVGLEELE 224

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 53.9 bits (130), Expect = 4e-09
 Identities = 42/180 (23%), Positives = 69/180 (38%), Gaps = 27/180 (15%)

Query: 38  LQSI--GSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDDSPLHISLLQSIASI 95
           L S+  G  SS   L L SN      ++        T +  L L  +   +S     +  
Sbjct: 19  LTSVPTGIPSSATRLELESNKLQ---SLPHGVFDKLTQLTKLSLSSN--GLSFKGCCSQS 73

Query: 96  FPLLKNLSMIGCEVNGVIRGQ-DFPHSKSLEHLDMEFMRIALNTSFLQIISE-----SMS 149
                +L  +    NGVI    +F   + LEHLD          S L+ +SE     S+ 
Sbjct: 74  DFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLD-------FQHSNLKQMSEFSVFLSLR 126

Query: 150 SLKYLSLSYYTLGINSSETLNQGLCS-LVHLQELYIASNDLRGSLPWCM-ANMTSLRILD 207
           +L YL +S+       +     G+ + L  L+ L +A N  + +    +   + +L  LD
Sbjct: 127 NLIYLDISH-----THTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLD 181

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 48.9 bits (117), Expect = 3e-07
 Identities = 38/196 (19%), Positives = 72/196 (36%), Gaps = 25/196 (12%)

Query: 1   MSFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSL---YLSSNNF 57
           +SFN +  +     + GL +L+ LD     ++     +     F SL +L    +S  + 
Sbjct: 85  LSFNGVITM--SSNFLGLEQLEHLDFQHSNLKQ----MSEFSVFLSLRNLIYLDISHTHT 138

Query: 58  TETVTITTQELHNFTNMEYLKLDDSPLHISLLQSIASIFPLLKNLSMIGCEVNGVIRGQD 117
                      +  +++E LK+  +    + L  I +    L  L +  C++   +    
Sbjct: 139 R---VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTA 194

Query: 118 FPHSKSLEHLDMEFMRI-ALNTSFLQIISESMSSLKYLSLSYYTLGINSSETLNQGLCS- 175
           F    SL+ L+M      +L+T   +     ++SL+ L  S      N   T  +     
Sbjct: 195 FNSLSSLQVLNMSHNNFFSLDTFPYK----CLNSLQVLDYSL-----NHIMTSKKQELQH 245

Query: 176 -LVHLQELYIASNDLR 190
               L  L +  ND  
Sbjct: 246 FPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 47.7 bits (114), Expect = 7e-07
 Identities = 50/208 (24%), Positives = 76/208 (36%), Gaps = 14/208 (6%)

Query: 1   MSFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTET 60
           +  N++ +L     ++ L +L  L LS  G+       QS    +SL  L LS N     
Sbjct: 35  LESNKLQSLP-HGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG---- 89

Query: 61  VTITTQELHNFTNMEYLKLDDSPLHISLLQSIASIFPLLKNLSMIGCEVNGVIRGQDFPH 120
           V   +        +E+L    S L      S+      L  L +       V     F  
Sbjct: 90  VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR-VAFNGIFNG 148

Query: 121 SKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSLSYYTLGINSSETLNQG-LCSLVHL 179
             SLE L M         +FL  I   + +L +L LS         E L+     SL  L
Sbjct: 149 LSSLEVLKMAGNS--FQENFLPDIFTELRNLTFLDLSQ-----CQLEQLSPTAFNSLSSL 201

Query: 180 QELYIASNDLRGSLPWCMANMTSLRILD 207
           Q L ++ N+      +    + SL++LD
Sbjct: 202 QVLNMSHNNFFSLDTFPYKCLNSLQVLD 229

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 44.6 bits (106), Expect = 6e-06
 Identities = 44/216 (20%), Positives = 79/216 (36%), Gaps = 29/216 (13%)

Query: 1   MSFNEINNLVVPQG-YNGLRKLKSLDLSGVGVRDGSKLLQSIGSF---SSLNSLYLSSNN 56
           +S N ++          G   LK LDLS       + ++    +F     L  L    +N
Sbjct: 59  LSSNGLSFKGCCSQSDFGTTSLKYLDLS------FNGVITMSSNFLGLEQLEHLDFQHSN 112

Query: 57  FTETVTITTQELHNFTNMEYLKLDDSPLHISLLQSIASIF---PLLKNLSMIGCEVNGVI 113
             +    +     +  N+ YL +     H  +  +   IF     L+ L M G       
Sbjct: 113 LKQMSEFSV--FLSLRNLIYLDISH--THTRVAFN--GIFNGLSSLEVLKMAGNSFQENF 166

Query: 114 RGQDFPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSLSYYTLGINSSETLNQG- 172
               F   ++L  LD+   ++            S+SSL+ L++S+     N+  +L+   
Sbjct: 167 LPDIFTELRNLTFLDLSQCQL---EQLSPTAFNSLSSLQVLNMSH-----NNFFSLDTFP 218

Query: 173 LCSLVHLQELYIASNDLRGSLPWCMANM-TSLRILD 207
              L  LQ L  + N +  S    + +  +SL  L+
Sbjct: 219 YKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLN 254

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 54.3 bits (131), Expect = 5e-09
 Identities = 21/210 (10%), Positives = 63/210 (30%), Gaps = 26/210 (12%)

Query: 16  NGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNME 75
           N   ++  L L G G     ++  +IG  + L  L L S+     V          +   
Sbjct: 78  NSNGRVTGLSLEGFGAS--GRVPDAIGQLTELEVLALGSHGEK--VNERLFGPKGISANM 133

Query: 76  YLKLDDSPLHISLLQSIASIFPLLKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIA 135
             +          +    +               + +         K    + ++  +I 
Sbjct: 134 SDEQ----KQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIG 189

Query: 136 LNTSFLQIISES---MSSLKYLSLSY---------------YTLGINSSETLNQGLCSLV 177
             ++ +  +S++   ++ L+   +                  +      +T +    +L 
Sbjct: 190 QLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLK 249

Query: 178 HLQELYIASNDLRGSLPWCMANMTSLRILD 207
            L ++ + +      LP  +  +  +++++
Sbjct: 250 DLTDVEVYNCPNLTKLPTFLKALPEMQLIN 279

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 52.4 bits (126), Expect = 2e-08
 Identities = 19/167 (11%), Positives = 46/167 (27%), Gaps = 7/167 (4%)

Query: 40  SIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDDSPLHISLLQSIASIFPLL 99
           S+ S   +  L L     +  V      +   T +E L L      ++            
Sbjct: 76  SLNSNGRVTGLSLEGFGASGRV---PDAIGQLTELEVLALGSHGEKVNERLFGPKGISAN 132

Query: 100 KNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSLSYY 159
            +            +     +    +  D+    I  +     I   S  +LK   +   
Sbjct: 133 MSDEQKQKMRMH-YQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQL 191

Query: 160 TLGINSSETLNQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRIL 206
           +   N+   +++ +  L  L++ Y+ ++              +    
Sbjct: 192 S---NNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYA 235

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 52.4 bits (126), Expect = 2e-08
 Identities = 24/208 (11%), Positives = 78/208 (37%), Gaps = 20/208 (9%)

Query: 11  VPQGYNGLRKLKSLDLS------GVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTIT 64
           +P     L +++ ++++      G  ++D  + L        +  +Y+  NN   T  + 
Sbjct: 265 LPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVE 323

Query: 65  TQELHNFTNMEYLKLDDSPLHISLLQSIASIFPL--LKNLSMIGCEVNGVIRGQDFPHSK 122
           T  L     +  L+   +     L   + +      L +L++   ++  +        ++
Sbjct: 324 T-SLQKMKKLGMLECLYN----QLEGKLPAFGSEIKLASLNLAYNQITEIPANF-CGFTE 377

Query: 123 SLEHLDMEFMRIALNTSFLQIISESMSSLKYLSLSY---YTLGINSSETLNQGLCSLVHL 179
            +E+L     ++    +      +S+S +  +  SY    ++   + + L+      +++
Sbjct: 378 QVENLSFAHNKLKYIPNIFDA--KSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINV 435

Query: 180 QELYIASNDLRGSLPWCMANMTSLRILD 207
             + +++N +        +  + L  ++
Sbjct: 436 SSINLSNNQISKFPKELFSTGSPLSSIN 463

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 52.0 bits (125), Expect = 3e-08
 Identities = 31/218 (14%), Positives = 64/218 (29%), Gaps = 40/218 (18%)

Query: 1   MSFNEINNLVVPQGYNGLRKLKSLDLS-----GVGVRDGSKLLQSIGSFSSLNSLYLSSN 55
            + N++  +        +  + ++D S      V  ++   L  +     +++S+ LS+N
Sbjct: 384 FAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNN 443

Query: 56  NFTETVTITTQELHNFTNMEYLKLDDSPLHISLLQSIASIFPLLKNLSMIGCEVNGVIRG 115
             +       +     + +  + L  + L      S+       KN              
Sbjct: 444 QIS---KFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNT------------- 487

Query: 116 QDFPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSLSYYTLGINSSETLNQGLCS 175
                   L  +D+ F +  L        + ++  L  + LSY     NS         +
Sbjct: 488 ------YLLTSIDLRFNK--LTKLSDDFRATTLPYLVGIDLSY-----NSFSKFPTQPLN 534

Query: 176 LVHLQELYI------ASNDLRGSLPWCMANMTSLRILD 207
              L+   I        N      P  +    SL  L 
Sbjct: 535 SSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQ 572

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 54.0 bits (130), Expect = 5e-09
 Identities = 33/216 (15%), Positives = 68/216 (31%), Gaps = 15/216 (6%)

Query: 2   SFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETV 61
             N    L V   +  L  L++L +                  +SLN L + + +     
Sbjct: 106 MGNPYQTLGVTSLFPNLTNLQTLRIGN-VETFSEIRRIDFAGLTSLNELEIKALSLR--- 161

Query: 62  TITTQELHNFTNMEYLKLDDSPLHISLLQSIASIFPLLKNLSMIGCEVNGVIRGQDFPHS 121
              +Q L +  ++ +L L  S     LL+  A I   ++ L +    +            
Sbjct: 162 NYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDE 220

Query: 122 KSLEHLDMEFMRIAL-NTSFLQIISESMSSLKYLSLSYYTLGINSSETLNQGLCS----- 175
            S     + F    L + SF +++      L+   + +    +N     N          
Sbjct: 221 VSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSEL 280

Query: 176 ----LVHLQELYIASNDLRGSLPWCMANMTSLRILD 207
                V ++ L+I    L   L    + +  ++ + 
Sbjct: 281 GKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRIT 316

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 46.6 bits (111), Expect = 2e-06
 Identities = 41/194 (21%), Positives = 75/194 (38%), Gaps = 21/194 (10%)

Query: 15  YNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNM 74
           Y+ L K+K + +    V              SL  L LS N   E     +     + ++
Sbjct: 306 YSLLEKVKRITVENSKVFLVPC--SFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSL 363

Query: 75  EYLKLDDSPLHISLLQSIASIFPLLKNLSMIGCEVNGVIRGQD-FPHSKSLEHLDMEFMR 133
           + L L  +  H+  +Q    I   LKNL+ +    N      D     + +  L++    
Sbjct: 364 QTLVLSQN--HLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLS--- 418

Query: 134 IALNTSFLQIISESMSSLKYLSLSYYTLGINSSETLNQGLCSLVHLQELYIASNDLRGSL 193
              +T    + +    +L+ L +S      N+ ++ +     L  LQELYI+ N L+ +L
Sbjct: 419 ---STGIRVVKTCIPQTLEVLDVSN-----NNLDSFSLF---LPRLQELYISRNKLK-TL 466

Query: 194 PWCMANMTSLRILD 207
           P   +    L ++ 
Sbjct: 467 PDA-SLFPVLLVMK 479

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 43.2 bits (102), Expect = 2e-05
 Identities = 32/167 (19%), Positives = 65/167 (38%), Gaps = 16/167 (9%)

Query: 44  FSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDDSPLHISLLQSIASIFPLLKNLS 103
            +++ SL LS N  T    I   +L    N++ L L  S   I+ ++     F  L +L 
Sbjct: 25  TAAMKSLDLSFNKITY---IGHGDLRACANLQVLILKSS--RINTIE--GDAFYSLGSLE 77

Query: 104 MIGCEVN--GVIRGQDFPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSLSYYTL 161
            +    N    +    F    SL++L++        T  +  +  ++++L+ L +     
Sbjct: 78  HLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPY--QTLGVTSLFPNLTNLQTLRIG---- 131

Query: 162 GINSSETLNQG-LCSLVHLQELYIASNDLRGSLPWCMANMTSLRILD 207
            + +   + +     L  L EL I +  LR      + ++  +  L 
Sbjct: 132 NVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLT 178

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 41.6 bits (98), Expect = 9e-05
 Identities = 37/207 (17%), Positives = 78/207 (37%), Gaps = 15/207 (7%)

Query: 1   MSFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTET 60
           +SFN+I  +           L+ L L    +        +  S  SL  L LS N+ +  
Sbjct: 33  LSFNKITYIG-HGDLRACANLQVLILKSSRINTIEG--DAFYSLGSLEHLDLSDNHLS-- 87

Query: 61  VTITTQELHNFTNMEYLKLDDSPLHISLLQSIASIFPLLKNLSMIGCEVNGVIRGQDFPH 120
            ++++      ++++YL L  +P     + S+      L+ L +   E    IR  DF  
Sbjct: 88  -SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAG 146

Query: 121 SKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSLSYYTLGINSSETLNQGLCS-LVHL 179
             SL  L+++ + +    ++     +S+  + +L+L       + S  L +     L  +
Sbjct: 147 LTSLNELEIKALSL---RNYQSQSLKSIRDIHHLTLHL-----SESAFLLEIFADILSSV 198

Query: 180 QELYIASNDLRGSLPWCMANMTSLRIL 206
           + L +   +L       +        +
Sbjct: 199 RYLELRDTNLARFQFSPLPVDEVSSPM 225

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 54.0 bits (130), Expect = 6e-09
 Identities = 45/214 (21%), Positives = 84/214 (39%), Gaps = 30/214 (14%)

Query: 1   MSFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSI--GSF---SSLNSLYLSSN 55
           +  N+I  +     +  LR L+ L LS          +++I  G+F   ++LN+L L  N
Sbjct: 71  LHENQIQIIK-VNSFKHLRHLEILQLS-------RNHIRTIEIGAFNGLANLNTLELFDN 122

Query: 56  NFTETVTITTQELHNFTNMEYLKLDDSPLHISLLQSIA-SIFPLLKNLSMIGCEVNGVIR 114
             T   TI        + ++ L L +    I  + S A +  P L+ L +   +    I 
Sbjct: 123 RLT---TIPNGAFVYLSKLKELWLRN--NPIESIPSYAFNRIPSLRRLDLGELKRLSYIS 177

Query: 115 GQDFPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSLSYYTLGINSSETLNQG-L 173
              F    +L +L++    +    +        +  L  L LS      N    +  G  
Sbjct: 178 EGAFEGLSNLRYLNLAMCNLREIPNL-----TPLIKLDELDLSG-----NHLSAIRPGSF 227

Query: 174 CSLVHLQELYIASNDLRGSLPWCMANMTSLRILD 207
             L+HLQ+L++  + ++        N+ SL  ++
Sbjct: 228 QGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEIN 261

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 50.5 bits (121), Expect = 9e-08
 Identities = 42/216 (19%), Positives = 81/216 (37%), Gaps = 34/216 (15%)

Query: 1   MSFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSI--GSFS---SLNSLYLSSN 55
           +S N I  +     +NGL  L +L+L           L +I  G+F     L  L+L +N
Sbjct: 95  LSRNHIRTIE-IGAFNGLANLNTLELF-------DNRLTTIPNGAFVYLSKLKELWLRNN 146

Query: 56  NFTETVTITTQELHNFTNMEYLKLDDSPLHISLLQSIASIFPLLKNLSMIGCEVNGVIRG 115
                 +I +   +   ++  L L +    +S +   A  F  L NL  +   +  +   
Sbjct: 147 PIE---SIPSYAFNRIPSLRRLDLGELK-RLSYISEGA--FEGLSNLRYLNLAMCNLREI 200

Query: 116 QDFPHSKSLEHLDMEFMRIAL--NTSFLQIISESMSSLKYLSLSYYTLGINSSETLNQG- 172
            +      L+ LD+    ++     SF     + +  L+ L +       +  + + +  
Sbjct: 201 PNLTPLIKLDELDLSGNHLSAIRPGSF-----QGLMHLQKLWMIQ-----SQIQVIERNA 250

Query: 173 LCSLVHLQELYIASNDLRGSLPW-CMANMTSLRILD 207
             +L  L E+ +A N+L   LP      +  L  + 
Sbjct: 251 FDNLQSLVEINLAHNNLT-LLPHDLFTPLHHLERIH 285

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 42.8 bits (101), Expect = 3e-05
 Identities = 36/169 (21%), Positives = 64/169 (37%), Gaps = 23/169 (13%)

Query: 44  FSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDDSPLHISLLQSIASIFPLLKNLS 103
            ++   L L  N       I      +  ++E L+L  +  HI  ++  A  F  L NL+
Sbjct: 63  STNTRLLNLHENQIQI---IKVNSFKHLRHLEILQLSRN--HIRTIEIGA--FNGLANLN 115

Query: 104 MIGCEVN--GVIRGQDFPHSKSLEHLDMEFMRIAL--NTSFLQIISESMSSLKYLSLSYY 159
            +    N    I    F +   L+ L +    I    + +F       + SL+ L L   
Sbjct: 116 TLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAF-----NRIPSLRRLDLGEL 170

Query: 160 TLGINSSETLNQG-LCSLVHLQELYIASNDLRGSLPWCMANMTSLRILD 207
                    +++G    L +L+ L +A  +LR  +P  +  +  L  LD
Sbjct: 171 ----KRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELD 213

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 53.5 bits (129), Expect = 6e-09
 Identities = 48/213 (22%), Positives = 92/213 (43%), Gaps = 32/213 (15%)

Query: 1   MSFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSI--GSFSSLNSLYLSSNNFT 58
           +  N+I+  + P  +  L KL+ L LS          L+ +      +L  L +  N  T
Sbjct: 83  LINNKISK-ISPGAFAPLVKLERLYLSK-------NQLKELPEKMPKTLQELRVHENEIT 134

Query: 59  ETVTITTQELHNFTNMEYLKLDDSPLHISLLQSIASIFPLLKNLSMIGCEVNG--VIRGQ 116
               +     +    M  ++L  +PL  S +++ A  F  +K LS I         I   
Sbjct: 135 ---KVRKSVFNGLNQMIVVELGTNPLKSSGIENGA--FQGMKKLSYIRIADTNITTIPQG 189

Query: 117 DFPHSKSLEHLDMEFMRI-ALNTSFLQIISESMSSLKYLSLSYYTLGINSSETLNQG-LC 174
             P   SL  L ++  +I  ++ + L+     +++L  L LS+     NS   ++ G L 
Sbjct: 190 LPP---SLTELHLDGNKITKVDAASLK----GLNNLAKLGLSF-----NSISAVDNGSLA 237

Query: 175 SLVHLQELYIASNDLRGSLPWCMANMTSLRILD 207
           +  HL+EL++ +N L   +P  +A+   ++++ 
Sbjct: 238 NTPHLRELHLNNNKLV-KVPGGLADHKYIQVVY 269

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 44.2 bits (105), Expect = 9e-06
 Identities = 27/165 (16%), Positives = 56/165 (33%), Gaps = 21/165 (12%)

Query: 1   MSFNEINNLVVPQGY-NGLRKLKSLDLSGVGVRDGSKLLQSI--GSFSSLNSLYLSSNNF 57
           +  N + +  +  G   G++KL  + ++          + +I  G   SL  L+L  N  
Sbjct: 152 LGTNPLKSSGIENGAFQGMKKLSYIRIAD-------TNITTIPQGLPPSLTELHLDGNKI 204

Query: 58  TETVTITTQELHNFTNMEYLKLDDSPLHISLLQSIASIFPLLKNLSMIGCEVNGVIRGQD 117
           T+   +    L    N+  L L  +   IS +           +L  +    N +++   
Sbjct: 205 TK---VDAASLKGLNNLAKLGLSFNS--ISAVD--NGSLANTPHLRELHLNNNKLVKVPG 257

Query: 118 -FPHSKSLEHLDME---FMRIALNTSFLQIISESMSSLKYLSLSY 158
                K ++ + +       I  N       +   +S   +SL  
Sbjct: 258 GLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFS 302

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 53.5 bits (129), Expect = 7e-09
 Identities = 35/203 (17%), Positives = 72/203 (35%), Gaps = 29/203 (14%)

Query: 7   NNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQ 66
           N L        L  L++LDL+          +Q +    S+ +L+ ++NN      I+  
Sbjct: 68  NVLYETLDLESLSTLRTLDLNN-------NYVQELLVGPSIETLHAANNN------ISRV 114

Query: 67  ELHNFTNMEYLKLDDSPLHISLLQSIASIFPLLKNLSMIGCEVNGVIRGQDFPHSKSLEH 126
                   + + L ++ + +            ++ L +   E++ V   +    S +LEH
Sbjct: 115 SCSRGQGKKNIYLANNKITMLRDLDEGC-RSRVQYLDLKLNEIDTVNFAELAASSDTLEH 173

Query: 127 LDMEFMRIALNTSFLQIISES--MSSLKYLSLSYYTLGINSSETLNQGLCSLVHLQELYI 184
           L+       L  +F+  +      + LK L LS      N    +     S   +  + +
Sbjct: 174 LN-------LQYNFIYDVKGQVVFAKLKTLDLSS-----NKLAFMGPEFQSAAGVTWISL 221

Query: 185 ASNDLRGSLPWCMANMTSLRILD 207
            +N L   +   +    +L   D
Sbjct: 222 RNNKLV-LIEKALRFSQNLEHFD 243

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 54.0 bits (130), Expect = 7e-09
 Identities = 44/225 (19%), Positives = 79/225 (35%), Gaps = 29/225 (12%)

Query: 1   MSFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTET 60
           +++N+IN +   + + GL  L+ L+LS   + +      +      +  + L  N+    
Sbjct: 297 LAYNKINKIA-DEAFYGLDNLQVLNLSYNLLGELYS--SNFYGLPKVAYIDLQKNHIA-- 351

Query: 61  VTITTQELHNFTNMEYLKLDDSPL-HISLLQSIASIF-------------PLLKNLSMIG 106
             I  Q       ++ L L D+ L  I  + SI  IF                  + +  
Sbjct: 352 -IIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSE 410

Query: 107 CEVNGVIRGQDFPHSKSLEHLDM---EFMRIALNTSFLQIISESMSSLKYLSLSYYTLGI 163
             +  +           L+ L +    F   + + +          SL+ L L    L +
Sbjct: 411 NRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTP-----SENPSLEQLFLGENMLQL 465

Query: 164 NSSETLNQG-LCSLVHLQELYIASNDLRGSLPWCMANMTSLRILD 207
                L       L HLQ LY+  N L    P   +++T+LR L 
Sbjct: 466 AWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLS 510

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 49.8 bits (119), Expect = 2e-07
 Identities = 42/248 (16%), Positives = 83/248 (33%), Gaps = 50/248 (20%)

Query: 1   MSFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTET 60
           +S N+I +L +   +  L  LKS+D S   +    +         +L+   L++N+    
Sbjct: 130 LSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSR 189

Query: 61  VTITTQELHN-FTNMEYLKLDDSPLHISLL----------QSIASIFPLLKNLSMIGCEV 109
           V++   +  N F NM    LD S    ++           +S A    L  ++   G   
Sbjct: 190 VSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGF 249

Query: 110 NGV----------------------------IRGQDFPHSKSLEHLDMEFMRI-ALNTSF 140
           + +                            +  + F   K L+ L++ + +I  +    
Sbjct: 250 HNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEA 309

Query: 141 LQIISESMSSLKYLSLSYYTLGINSSETLNQG-LCSLVHLQELYIASNDLRGSLPWCMAN 199
                  + +L+ L+LSY     N    L       L  +  + +  N +          
Sbjct: 310 FY----GLDNLQVLNLSY-----NLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKF 360

Query: 200 MTSLRILD 207
           +  L+ LD
Sbjct: 361 LEKLQTLD 368

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 48.3 bits (115), Expect = 6e-07
 Identities = 50/217 (23%), Positives = 79/217 (36%), Gaps = 26/217 (11%)

Query: 2   SFNEINNL-VVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTET 60
           +F    NL  VPQ    L   + L LS   +R  +    S      L  L L S      
Sbjct: 9   AFYRFCNLTQVPQV---LNTTERLLLSFNYIRTVTA--SSFPFLEQLQLLELGSQYT--P 61

Query: 61  VTITTQELHNFTNMEYLKLDDSPLHISLLQSIASIFPLLKNLSMIGCEV-NGVIRGQDFP 119
           +TI  +   N  N+  L L  S ++  L          L  L +  C + + V++   F 
Sbjct: 62  LTIDKEAFRNLPNLRILDLGSSKIY-FLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFR 120

Query: 120 HSKSLEHLDM---EFMRIALNTSFLQIISESMSSLKYLSLSYYTLGINSSETLNQGLCSL 176
           + K+L  LD+   +   + L+ SF       ++SLK +  S   + +     L + L   
Sbjct: 121 NLKALTRLDLSKNQIRSLYLHPSF-----GKLNSLKSIDFSSNQIFLVCEHEL-EPLQGK 174

Query: 177 VHLQELYIASNDLRGSLPWCMANM------TSLRILD 207
             L    +A+N L   +               L ILD
Sbjct: 175 -TLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILD 210

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 45.2 bits (107), Expect = 6e-06
 Identities = 29/222 (13%), Positives = 69/222 (31%), Gaps = 20/222 (9%)

Query: 1   MSFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTET 60
           +  ++I  L  P  + GL  L  L L   G+ D         +  +L  L LS N     
Sbjct: 80  LGSSKIYFLH-PDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRS- 137

Query: 61  VTITTQELHNFTNMEYLKLDDSPLHISLLQSIASIFPL-LKNLSMIGCEVNGVIRGQDFP 119
                       +++ +    + + +     +  +    L   S+    +   +      
Sbjct: 138 -LYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGK 196

Query: 120 HSKSLEHLDMEFMRIALN-------TSFLQIISES-------MSSLKYLSLSYYTLGINS 165
                 ++ +E + ++ N        +F   IS+S          +      ++ +    
Sbjct: 197 CMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPD 256

Query: 166 SETLNQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILD 207
             T   GL     ++ L ++   +          +  L++L+
Sbjct: 257 QNTF-AGLARS-SVRHLDLSHGFVFSLNSRVFETLKDLKVLN 296

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 40.9 bits (96), Expect = 2e-04
 Identities = 29/226 (12%), Positives = 68/226 (30%), Gaps = 27/226 (11%)

Query: 1   MSFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQ-SIGSFSSLNSL---YLSSNN 56
           +        +  + +  L  L+ LDL        SK+      +F  L  L    L    
Sbjct: 55  LGSQYTPLTIDKEAFRNLPNLRILDLG------SSKIYFLHPDAFQGLFHLFELRLYFCG 108

Query: 57  FTETVTITTQELHNFTNMEYLKLDDSPLHISLLQSIASIFPLLKNLSMIGCEVNGVIRGQ 116
            ++   +      N   +  L L  + +    L         LK++     ++  ++   
Sbjct: 109 LSD-AVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIF-LVCEH 166

Query: 117 DFP--HSKSLEHLDMEFMRIALNTS---FLQIISESMSSLKYLSLSYYTLGINSSETLNQ 171
           +      K+L    +    +    S      +       L+ L +S     ++ +   + 
Sbjct: 167 ELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSN 226

Query: 172 GLCSL--------VHLQELYIASNDLRGSLPWCMANM--TSLRILD 207
            +            H+       ++++       A +  +S+R LD
Sbjct: 227 AISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLD 272

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 53.6 bits (129), Expect = 9e-09
 Identities = 39/204 (19%), Positives = 72/204 (35%), Gaps = 19/204 (9%)

Query: 7   NNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSL---YLSSNNFTETVTI 63
           N          L+ LK L  +       S    +  S   L SL    LS N  +     
Sbjct: 313 NCKFGQFPTLKLKSLKRLTFT-------SNKGGNAFSEVDLPSLEFLDLSRNGLS-FKGC 364

Query: 64  TTQELHNFTNMEYLKLDDSPLHISLLQSIASIFPLLKNLSMIGCEVNGVIRGQDFPHSKS 123
            +Q     T+++YL L  +   +  + S       L++L      +  +     F   ++
Sbjct: 365 CSQSDFGTTSLKYLDLSFN--GVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN 422

Query: 124 LEHLDMEFMRIALNTSFLQIISESMSSLKYLSLSYYTLGINSSETLNQGLCSLVHLQELY 183
           L +LD+              I   +SSL+ L ++  +        L      L +L  L 
Sbjct: 423 LIYLDISHTHT---RVAFNGIFNGLSSLEVLKMAGNSF---QENFLPDIFTELRNLTFLD 476

Query: 184 IASNDLRGSLPWCMANMTSLRILD 207
           ++   L    P    +++SL++L+
Sbjct: 477 LSQCQLEQLSPTAFNSLSSLQVLN 500

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 53.2 bits (128), Expect = 1e-08
 Identities = 51/202 (25%), Positives = 69/202 (34%), Gaps = 13/202 (6%)

Query: 7   NNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQ 66
           N          L  L+ LDLS  G+       QS    +SL  L LS N         + 
Sbjct: 335 NKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITM----SS 390

Query: 67  ELHNFTNMEYLKLDDSPLHISLLQSIASIFPLLKNLSMIGCEVNGVIRGQDFPHSKSLEH 126
                  +E+L    S L      S+      L  L +          G  F    SLE 
Sbjct: 391 NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG-IFNGLSSLEV 449

Query: 127 LDMEFMRIALNTSFLQIISESMSSLKYLSLSYYTLGINSSETLNQG-LCSLVHLQELYIA 185
           L M         +FL  I   + +L +L LS         E L+     SL  LQ L +A
Sbjct: 450 LKMAGNSFQE--NFLPDIFTELRNLTFLDLSQ-----CQLEQLSPTAFNSLSSLQVLNMA 502

Query: 186 SNDLRGSLPWCMANMTSLRILD 207
           SN L+         +TSL+ + 
Sbjct: 503 SNQLKSVPDGIFDRLTSLQKIW 524

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 45.5 bits (108), Expect = 4e-06
 Identities = 39/210 (18%), Positives = 81/210 (38%), Gaps = 16/210 (7%)

Query: 1   MSFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTET 60
           +SFN + +L     +    +L+ LDLS   ++       +  S S L++L L+ N     
Sbjct: 35  LSFNPLRHLG-SYSFFSFPELQVLDLSRCEIQTIED--GAYQSLSHLSTLILTGNPIQ-- 89

Query: 61  VTITTQELHNFTNMEYLKLDDSPLHISLLQSIASIFPLLKNLSMIGCEVNGVIRGQDFPH 120
            ++        ++++ L   ++ L  SL          LK L++    +      + F +
Sbjct: 90  -SLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 147

Query: 121 SKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSLSYYTL--GINSSETLNQGLCSLVH 178
             +LEHLD+       +     I    +  L  + L   +L   +N    +  G    + 
Sbjct: 148 LTNLEHLDLS------SNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR 201

Query: 179 LQELYIASNDLRGSLPW-CMANMTSLRILD 207
           L +L + +N    ++   C+  +  L +  
Sbjct: 202 LHKLTLRNNFDSLNVMKTCIQGLAGLEVHR 231

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 45.1 bits (107), Expect = 6e-06
 Identities = 39/196 (19%), Positives = 71/196 (36%), Gaps = 16/196 (8%)

Query: 1   MSFNEINNLVVPQGY-NGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTE 59
           +S N ++          G   LK LDLS  GV     +  +      L  L    +N  +
Sbjct: 354 LSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGV---ITMSSNFLGLEQLEHLDFQHSNLKQ 410

Query: 60  TVTITTQELHNFTNMEYLKLDDSPLHISLLQSIASIFPLLKNLSMIGCEVNGVIRGQDFP 119
               +     +  N+ YL +  +         I +    L+ L M G           F 
Sbjct: 411 MSEFSV--FLSLRNLIYLDISHTHTR-VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFT 467

Query: 120 HSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSLSYYTLGINSSETLNQG-LCSLVH 178
             ++L  LD+   ++            S+SSL+ L+++      N  +++  G    L  
Sbjct: 468 ELRNLTFLDLSQCQL---EQLSPTAFNSLSSLQVLNMAS-----NQLKSVPDGIFDRLTS 519

Query: 179 LQELYIASNDLRGSLP 194
           LQ++++ +N    S P
Sbjct: 520 LQKIWLHTNPWDCSCP 535

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 42.0 bits (99), Expect = 6e-05
 Identities = 53/262 (20%), Positives = 88/262 (33%), Gaps = 68/262 (25%)

Query: 1   MSFNEINNLVVPQGYNGLRKLKSLDLSG-----VGVRDGSKL----------------LQ 39
           ++ N I +  +P+ ++ L  L+ LDLS      +   D   L                + 
Sbjct: 131 VAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN 190

Query: 40  SI--GSFSSLN--SLYLSSNNFTETV----------------------------TITTQE 67
            I  G+F  +    L L +N  +  V                                  
Sbjct: 191 FIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSA 250

Query: 68  LHNFTNMEYLKLDDSPLHISLLQSIASIFPLLKNLSMIGCEVNGVIRGQDFPHSKSLEHL 127
           L    N+   +   + L   L   I  +F  L N+S        + R +DF ++   +HL
Sbjct: 251 LEGLCNLTIEEFRLAYLDYYLDD-IIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHL 309

Query: 128 DMEFMRIALNTSFLQIISESMSSLKYLSLSYYTLGINSSETLNQGLCSLVHLQELYIASN 187
           ++      +N  F Q  +  + SLK L+ +    G   SE        L  L+ L ++ N
Sbjct: 310 EL------VNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEV------DLPSLEFLDLSRN 357

Query: 188 DLR--GSLPWCMANMTSLRILD 207
            L   G         TSL+ LD
Sbjct: 358 GLSFKGCCSQSDFGTTSLKYLD 379

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 41.2 bits (97), Expect = 1e-04
 Identities = 37/249 (14%), Positives = 75/249 (30%), Gaps = 46/249 (18%)

Query: 1   MSFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQ-SIGSFSSLNSLYLSSNNFTE 59
           +  N  +  V+     GL  L+   L     R+   L +    +   L +L +       
Sbjct: 207 LRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAY 266

Query: 60  TVTITTQELHNFTNMEYLKLDD-SPLHISLLQSIASIFPLLKNLSMIGCEVNGVIRGQ-- 116
                   +  F  +  +       + I  ++   S     ++L ++ C+       +  
Sbjct: 267 LDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDF-SYNFGWQHLELVNCKFGQFPTLKLK 325

Query: 117 ----------------DFPHSKSLEHLDMEFMRI-----------------ALNTSFLQI 143
                                 SLE LD+    +                  L+ SF  +
Sbjct: 326 SLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGV 385

Query: 144 IS-----ESMSSLKYLSLSYYTLGINSSETLNQGLCSLVHLQELYIASNDLRGSLPWCMA 198
           I+       +  L++L   +  L   S  ++     SL +L  L I+    R +      
Sbjct: 386 ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSV---FLSLRNLIYLDISHTHTRVAFNGIFN 442

Query: 199 NMTSLRILD 207
            ++SL +L 
Sbjct: 443 GLSSLEVLK 451

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 40.1 bits (94), Expect = 3e-04
 Identities = 28/163 (17%), Positives = 61/163 (37%), Gaps = 11/163 (6%)

Query: 44  FSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDDSPLHISLLQSIASIFPLLKNLS 103
             S  +L LS N       + +    +F  ++ L L    +  ++          L  L 
Sbjct: 27  PFSTKNLDLSFNPLRH---LGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLI 82

Query: 104 MIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSLSYYTLGI 163
           + G  +  +  G  F    SL+ L      +    S        + +LK L++++  +  
Sbjct: 83  LTGNPIQSLALG-AFSGLSSLQKLVAVETNL---ASLENFPIGHLKTLKELNVAHNLI-- 136

Query: 164 NSSETLNQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRIL 206
             S  L +   +L +L+ L ++SN ++      +  +  + +L
Sbjct: 137 -QSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLL 178

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 52.2 bits (126), Expect = 2e-08
 Identities = 34/206 (16%), Positives = 73/206 (35%), Gaps = 30/206 (14%)

Query: 2   SFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETV 61
               IN +        L +     L    V D    + +     S+  L ++        
Sbjct: 8   LPAPINQI---FPDADLAEGIRAVLQKASVTD----VVTQEELESITKLVVAGEKVASI- 59

Query: 62  TITTQELHNFTNMEYLKLDDSPLHISLLQSIASIFPLLKNLSMIGCEVNGVIRGQDFPHS 121
               Q +   TN+EYL L+ +   I+ +  +++    L  L+ +    N +       + 
Sbjct: 60  ----QGIEYLTNLEYLNLNGN--QITDISPLSN----LVKLTNLYIGTNKITDISALQNL 109

Query: 122 KSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSLSYYTLGINSSETLNQGLCSLVHLQE 181
            +L  L +    I+  +        +++ +  L+L       N + +    L ++  L  
Sbjct: 110 TNLRELYLNEDNISDISPL-----ANLTKMYSLNLGA-----NHNLSDLSPLSNMTGLNY 159

Query: 182 LYIASNDLRGSLPWCMANMTSLRILD 207
           L +  + ++   P  +AN+T L  L 
Sbjct: 160 LTVTESKVKDVTP--IANLTDLYSLS 183

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 47.5 bits (114), Expect = 8e-07
 Identities = 39/201 (19%), Positives = 81/201 (40%), Gaps = 26/201 (12%)

Query: 7   NNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQ 66
           + +        L  L SL L+   + D    +  + S +SL+      N  T+       
Sbjct: 165 SKVKDVTPIANLTDLYSLSLNYNQIED----ISPLASLTSLHYFTAYVNQITDI-----T 215

Query: 67  ELHNFTNMEYLKLDDSPLHISLLQSIASIFPLLKNLSMIGCEVNGVIRGQDFPHSKSLEH 126
            + N T +  LK+ ++   I+ L  +A+    L  L+ +    N +           L+ 
Sbjct: 216 PVANMTRLNSLKIGNN--KITDLSPLAN----LSQLTWLEIGTNQISDINAVKDLTKLKM 269

Query: 127 LDMEFMRIALNTSFLQIISESMSSLKYLSLSYYTLGINSSETLNQGLCSLVHLQELYIAS 186
           L++   +I    S + +++ ++S L  L L+   LG    E +      L +L  L+++ 
Sbjct: 270 LNVGSNQI----SDISVLN-NLSQLNSLFLNNNQLGNEDMEVIGG----LTNLTTLFLSQ 320

Query: 187 NDLRGSLPWCMANMTSLRILD 207
           N +    P  +A+++ +   D
Sbjct: 321 NHITDIRP--LASLSKMDSAD 339

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 46.8 bits (112), Expect = 1e-06
 Identities = 36/206 (17%), Positives = 78/206 (37%), Gaps = 28/206 (13%)

Query: 2   SFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETV 61
             N  +NL      + +  L  L ++   V+D    +  I + + L SL L+ N   +  
Sbjct: 140 GAN--HNLSDLSPLSNMTGLNYLTVTESKVKD----VTPIANLTDLYSLSLNYNQIEDI- 192

Query: 62  TITTQELHNFTNMEYLKLDDSPLHISLLQSIASIFPLLKNLSMIGCEVNGVIRGQDFPHS 121
                 L + T++ Y     +   I+ +  +A+    +  L+ +    N +       + 
Sbjct: 193 ----SPLASLTSLHYFTAYVN--QITDITPVAN----MTRLNSLKIGNNKITDLSPLANL 242

Query: 122 KSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSLSYYTLGINSSETLNQGLCSLVHLQE 181
             L  L++   +I+   +      + ++ LK L++       N    +   L +L  L  
Sbjct: 243 SQLTWLEIGTNQISDINAV-----KDLTKLKMLNVGS-----NQISDI-SVLNNLSQLNS 291

Query: 182 LYIASNDLRGSLPWCMANMTSLRILD 207
           L++ +N L       +  +T+L  L 
Sbjct: 292 LFLNNNQLGNEDMEVIGGLTNLTTLF 317

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 50.6 bits (121), Expect = 7e-08
 Identities = 35/203 (17%), Positives = 72/203 (35%), Gaps = 29/203 (14%)

Query: 7   NNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQ 66
           N L        L  L++LDL+          +Q +    S+ +L+ ++NN      I+  
Sbjct: 68  NVLYETLDLESLSTLRTLDLNN-------NYVQELLVGPSIETLHAANNN------ISRV 114

Query: 67  ELHNFTNMEYLKLDDSPLHISLLQSIASIFPLLKNLSMIGCEVNGVIRGQDFPHSKSLEH 126
                   + + L ++ + +            ++ L +   E++ V   +    S +LEH
Sbjct: 115 SCSRGQGKKNIYLANNKITMLRDLDEGC-RSRVQYLDLKLNEIDTVNFAELAASSDTLEH 173

Query: 127 LDMEFMRIALNTSFLQIISES--MSSLKYLSLSYYTLGINSSETLNQGLCSLVHLQELYI 184
           L+       L  +F+  +      + LK L LS      N    +     S   +  + +
Sbjct: 174 LN-------LQYNFIYDVKGQVVFAKLKTLDLSS-----NKLAFMGPEFQSAAGVTWISL 221

Query: 185 ASNDLRGSLPWCMANMTSLRILD 207
            +N L   +   +    +L   D
Sbjct: 222 RNNKLV-LIEKALRFSQNLEHFD 243

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 49.8 bits (119), Expect = 1e-07
 Identities = 26/190 (13%), Positives = 59/190 (31%), Gaps = 13/190 (6%)

Query: 18  LRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYL 77
             KLK+LDLS   +   + +     S + +  + L +N          + L    N+E+ 
Sbjct: 190 FAKLKTLDLSSNKL---AFMGPEFQSAAGVTWISLRNNKLVLI----EKALRFSQNLEHF 242

Query: 78  KLDDSPLHISLLQSIASIFPLLKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALN 137
            L  +  H   L+     F   + +  +  +    + GQ+                    
Sbjct: 243 DLRGNGFHCGTLRDF---FSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCC--- 296

Query: 138 TSFLQIISESMSSLKYLSLSYYTLGINSSETLNQGLCSLVHLQELYIASNDLRGSLPWCM 197
                  ++ + +LK    +  +   + +E L     +    +E+       R  +    
Sbjct: 297 EDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRTVIDQVT 356

Query: 198 ANMTSLRILD 207
               +   L+
Sbjct: 357 LRKQAKITLE 366

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 41.0 bits (96), Expect = 2e-04
 Identities = 40/222 (18%), Positives = 85/222 (38%), Gaps = 33/222 (14%)

Query: 1   MSFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTET 60
           ++ + +   +          +K LDLSG  +   S     +  F+ L  L LSSN   E 
Sbjct: 17  VTDSSLKQAL-ASLRQSAWNVKELDLSGNPLSQISA--ADLAPFTKLELLNLSSNVLYE- 72

Query: 61  VTITTQELHNFTNMEYLKLDDSPL-HISLLQSI--------------ASIFPLLKNLSMI 105
               T +L + + +  L L+++ +  + +  SI               S     KN+ + 
Sbjct: 73  ----TLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLA 128

Query: 106 GCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSLSYYTLGINS 165
             ++  +    D      +++LD++   I  +T     ++ S  +L++L+L Y     N 
Sbjct: 129 NNKITMLRDL-DEGCRSRVQYLDLKLNEI--DTVNFAELAASSDTLEHLNLQY-----NF 180

Query: 166 SETLNQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILD 207
              +   +     L+ L ++SN L   +     +   +  + 
Sbjct: 181 IYDVKGQVV-FAKLKTLDLSSNKLA-FMGPEFQSAAGVTWIS 220

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 50.0 bits (120), Expect = 1e-07
 Identities = 42/214 (19%), Positives = 75/214 (35%), Gaps = 45/214 (21%)

Query: 1   MSFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSI--GSFSSLNSLYLSSNNFT 58
           +  N+I+  +  + ++ LRKL+ L +S          L  I     SSL  L +  N   
Sbjct: 85  LVNNKISK-IHEKAFSPLRKLQKLYISK-------NHLVEIPPNLPSSLVELRIHDNRIR 136

Query: 59  ETVTITTQELHNFTNMEYLKLDDSPLHISLLQSIASIFPLLKNLSMIGCEVNGV------ 112
               +         NM  +++  +PL  S  +  A     L  L +   ++ G+      
Sbjct: 137 ---KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPE 193

Query: 113 --------------IRGQDFPHSKSLEHLDMEFMRIAL--NTSFLQIISESMSSLKYLSL 156
                         I  +D      L  L +   +I +  N S        + +L+ L L
Sbjct: 194 TLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSL-----SFLPTLRELHL 248

Query: 157 SYYTLGINSSETLNQGLCSLVHLQELYIASNDLR 190
                  N    +  GL  L  LQ +Y+ +N++ 
Sbjct: 249 DN-----NKLSRVPAGLPDLKLLQVVYLHTNNIT 277

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 49.2 bits (118), Expect = 2e-07
 Identities = 39/201 (19%), Positives = 82/201 (40%), Gaps = 28/201 (13%)

Query: 7   NNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQ 66
           N +   +    L  L+ LD+S   V D    +  +   ++L SL  ++N  ++       
Sbjct: 165 NQVTDLKPLANLTTLERLDISSNKVSD----ISVLAKLTNLESLIATNNQISD-----IT 215

Query: 67  ELHNFTNMEYLKLDDSPLHISLLQSIASIFPLLKNLSMIGCEVNGVIRGQDFPHSKSLEH 126
            L   TN++ L L+ +   +  + ++AS    L NL+ +    N +           L  
Sbjct: 216 PLGILTNLDELSLNGN--QLKDIGTLAS----LTNLTDLDLANNQISNLAPLSGLTKLTE 269

Query: 127 LDMEFMRIALNTSFLQIISESMSSLKYLSLSYYTLGINSSETLNQGLCSLVHLQELYIAS 186
           L +   +I+  +         +++L  L L+      N  E ++  + +L +L  L +  
Sbjct: 270 LKLGANQISNISPL-----AGLTALTNLELNE-----NQLEDIS-PISNLKNLTYLTLYF 318

Query: 187 NDLRGSLPWCMANMTSLRILD 207
           N++    P   +++T L+ L 
Sbjct: 319 NNISDISPV--SSLTKLQRLF 337

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 47.7 bits (114), Expect = 9e-07
 Identities = 34/216 (15%), Positives = 79/216 (36%), Gaps = 37/216 (17%)

Query: 7   NNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQ 66
            N+        L ++ +L    +G++     +  +   ++L  +  S+N  T+       
Sbjct: 34  TNVTDTVSQTDLDQVTTLQADRLGIKS----IDGVEYLNNLTQINFSNNQLTD-----IT 84

Query: 67  ELHNFTNMEYLKLDDSPLHISLLQSIASIFPLLKNLSMIGCEVNGVIRGQDFPHSKSLEH 126
            L N T +  + ++++   I+ +  +A+    L NL+ +    N +       +  +L  
Sbjct: 85  PLKNLTKLVDILMNNN--QIADITPLAN----LTNLTGLTLFNNQITDIDPLKNLTNLNR 138

Query: 127 LDMEFMRIALNTSFLQIISESMSSLKYLSLSYYTLGINSSETLNQ--------------- 171
           L++    I+  ++        ++SL+ LS       +     L                 
Sbjct: 139 LELSSNTISDISAL-----SGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDIS 193

Query: 172 GLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILD 207
            L  L +L+ L   +N +    P  +  +T+L  L 
Sbjct: 194 VLAKLTNLESLIATNNQISDITP--LGILTNLDELS 227

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 45.7 bits (109), Expect = 4e-06
 Identities = 41/201 (20%), Positives = 78/201 (38%), Gaps = 28/201 (13%)

Query: 7   NNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQ 66
           N +        L  L  L L+G  ++D    + ++ S ++L  L L++N  +        
Sbjct: 209 NQISDITPLGILTNLDELSLNGNQLKD----IGTLASLTNLTDLDLANNQIS-----NLA 259

Query: 67  ELHNFTNMEYLKLDDSPLHISLLQSIASIFPLLKNLSMIGCEVNGVIRGQDFPHSKSLEH 126
            L   T +  LKL  +   IS +  +A     L  L+ +    N +       + K+L +
Sbjct: 260 PLSGLTKLTELKLGAN--QISNISPLAG----LTALTNLELNENQLEDISPISNLKNLTY 313

Query: 127 LDMEFMRIALNTSFLQIISESMSSLKYLSLSYYTLGINSSETLNQGLCSLVHLQELYIAS 186
           L + F  I+  +        S++ L+ L         N    ++  L +L ++  L    
Sbjct: 314 LTLYFNNISDISPV-----SSLTKLQRLFFYN-----NKVSDVS-SLANLTNINWLSAGH 362

Query: 187 NDLRGSLPWCMANMTSLRILD 207
           N +    P  +AN+T +  L 
Sbjct: 363 NQISDLTP--LANLTRITQLG 381

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 45.0 bits (107), Expect = 7e-06
 Identities = 42/201 (20%), Positives = 75/201 (37%), Gaps = 29/201 (14%)

Query: 7   NNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQ 66
           N +        L  L  L L    + D    +  + + ++LN L LSSN  ++       
Sbjct: 100 NQIADITPLANLTNLTGLTLFNNQITD----IDPLKNLTNLNRLELSSNTISD-----IS 150

Query: 67  ELHNFTNMEYLKLDDSPLHISLLQSIASIFPLLKNLSMIGCEVNGVIRGQDFPHSKSLEH 126
            L   T+++ L   +    +  L +       L  L  +    N V          +LE 
Sbjct: 151 ALSGLTSLQQLSFGNQVTDLKPLAN-------LTTLERLDISSNKVSDISVLAKLTNLES 203

Query: 127 LDMEFMRIALNTSFLQIISESMSSLKYLSLSYYTLGINSSETLNQGLCSLVHLQELYIAS 186
           L     +I+  T         +++L  LSL+      N  + +   L SL +L +L +A+
Sbjct: 204 LIATNNQISDITPL-----GILTNLDELSLNG-----NQLKDIG-TLASLTNLTDLDLAN 252

Query: 187 NDLRGSLPWCMANMTSLRILD 207
           N +    P  ++ +T L  L 
Sbjct: 253 NQISNLAP--LSGLTKLTELK 271

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 39.9 bits (94), Expect = 3e-04
 Identities = 34/200 (17%), Positives = 73/200 (36%), Gaps = 26/200 (13%)

Query: 7   NNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQ 66
           N L        L  L  LDL+   + +    L  +   + L  L L +N  +        
Sbjct: 231 NQLKDIGTLASLTNLTDLDLANNQISN----LAPLSGLTKLTELKLGANQIS-----NIS 281

Query: 67  ELHNFTNMEYLKLDDSPLHISLLQSIASIFPLLKNLSMIGCEVNGVIRGQDFPHSKSLEH 126
            L   T +  L+L+++   +  +  I++    LKNL+ +    N +           L+ 
Sbjct: 282 PLAGLTALTNLELNENQ--LEDISPISN----LKNLTYLTLYFNNISDISPVSSLTKLQR 335

Query: 127 LDMEFMRIALNTSFLQIISESMSSLKYLSLSYYTLGINSSETLNQGLCSLVHLQELYIAS 186
           L     +++  +S       +++++ +LS  +     N    L   L +L  + +L +  
Sbjct: 336 LFFYNNKVSDVSSL-----ANLTNINWLSAGH-----NQISDLT-PLANLTRITQLGLND 384

Query: 187 NDLRGSLPWCMANMTSLRIL 206
                +     AN++    +
Sbjct: 385 QAWTNAPVNYKANVSIPNTV 404

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 47.9 bits (115), Expect = 6e-07
 Identities = 36/217 (16%), Positives = 80/217 (36%), Gaps = 35/217 (16%)

Query: 2   SFNEINNLV--VPQGYNGLRKLKSLDLSG---VGVRDGSKLLQSIGSFSSLNSLYLSSNN 56
               INNLV  +P     L +L  L ++     G      +   +    +L +L  S N 
Sbjct: 82  YIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSG-----AIPDFLSQIKTLVTLDFSYNA 136

Query: 57  FTETVTITTQELHNFTNMEYLKLDDSPLHISLLQSIASIFPLLKNLSMIGCEVNGVIRGQ 116
            + T+      + +  N+  +  D + +  ++  S  S   L  ++++    + G I   
Sbjct: 137 LSGTLP---PSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKI--- 190

Query: 117 DFPHSKSLEHLDMEFMRIALNTSFLQIISE--SMSSLKYLSLSYYTLGINSSETLNQG-- 172
                 +  +L++ F+ ++ N           S  + + + L+  +L             
Sbjct: 191 ----PPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSL---------AFDL 237

Query: 173 --LCSLVHLQELYIASNDLRGSLPWCMANMTSLRILD 207
             +    +L  L + +N + G+LP  +  +  L  L+
Sbjct: 238 GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLN 274

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 47.4 bits (113), Expect = 7e-07
 Identities = 37/203 (18%), Positives = 76/203 (37%), Gaps = 32/203 (15%)

Query: 7   NNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQ 66
           +N+        L  + +L   G GV      ++ +   ++L  L L  N  T+       
Sbjct: 29  SNVTDTVTQADLDGITTLSAFGTGVTT----IEGVQYLNNLIGLELKDNQITD-----LA 79

Query: 67  ELHNFTNMEYLKLDDSPLHISLLQSIASIFPL--LKNLSMIGCEVNGVIRGQDFPHSKSL 124
            L N T +  L+L  +P        + ++  +  L+++  +      +          +L
Sbjct: 80  PLKNLTKITELELSGNP--------LKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNL 131

Query: 125 EHLDMEFMRIALNTSFLQIISESMSSLKYLSLSYYTLGINSSETLNQGLCSLVHLQELYI 184
           + L ++  +I  N S L      +++L+YLS+            L   L +L  L  L  
Sbjct: 132 QVLYLDLNQIT-NISPL----AGLTNLQYLSIGN-----AQVSDL-TPLANLSKLTTLKA 180

Query: 185 ASNDLRGSLPWCMANMTSLRILD 207
             N +    P  +A++ +L  + 
Sbjct: 181 DDNKISDISP--LASLPNLIEVH 201

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 47.2 bits (112), Expect = 1e-06
 Identities = 43/198 (21%), Positives = 75/198 (37%), Gaps = 24/198 (12%)

Query: 15  YNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNM 74
           Y     +   + +  G R     +      S    L  S+N  T       +   + T +
Sbjct: 296 YEIFSNMNIKNFTVSGTR--MVHMLCPSKISPFLHLDFSNNLLT---DTVFENCGHLTEL 350

Query: 75  EYLKLDDSPLHISLLQSIASIFPLLKNLSMIGCEVNG---VIRGQDFPHSKSLEHLDMEF 131
           E L L  +   +  L  IA +   +K+L  +    N      +  D   +KSL  L+M  
Sbjct: 351 ETLILQMN--QLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMS- 407

Query: 132 MRIALNTSFLQIISESM-SSLKYLSLSYYTLGINSSETLNQGLCSLVHLQELYIASNDLR 190
                +      I   +   +K L L       N  +++ + +  L  LQEL +ASN L+
Sbjct: 408 -----SNILTDTIFRCLPPRIKVLDLHS-----NKIKSIPKQVVKLEALQELNVASNQLK 457

Query: 191 GSLPWCM-ANMTSLRILD 207
            S+P  +   +TSL+ + 
Sbjct: 458 -SVPDGIFDRLTSLQKIW 474

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 45.8 bits (109), Expect = 2e-06
 Identities = 43/209 (20%), Positives = 80/209 (38%), Gaps = 35/209 (16%)

Query: 1   MSFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTET 60
           +    + + V     N L  +  +  +   ++     +Q I    ++  L+L+ N  T+ 
Sbjct: 31  LKKKSVTDAV---TQNELNSIDQIIANNSDIKS----VQGIQYLPNVTKLFLNGNKLTDI 83

Query: 61  VTITTQELHNFTNMEYLKLDDSPLHISLLQSIASIFPL--LKNLSMIGCEVNGVIRGQDF 118
                + L N  N+ +L LD+          +  +  L  LK L  +  E NG+      
Sbjct: 84  -----KPLANLKNLGWLFLDE--------NKVKDLSSLKDLKKLKSLSLEHNGISDINGL 130

Query: 119 PHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSLSYYTLGINSSETLNQGLCSLVH 178
            H   LE L +   +I  + + L      ++ L  LSL       N    +   L  L  
Sbjct: 131 VHLPQLESLYLGNNKIT-DITVL----SRLTKLDTLSLED-----NQISDI-VPLAGLTK 179

Query: 179 LQELYIASNDLRGSLPWCMANMTSLRILD 207
           LQ LY++ N +       +A + +L +L+
Sbjct: 180 LQNLYLSKNHISDLRA--LAGLKNLDVLE 206

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 44.7 bits (106), Expect = 7e-06
 Identities = 36/206 (17%), Positives = 68/206 (33%), Gaps = 35/206 (16%)

Query: 4   NEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTI 63
             I  +      +   +    +L    V D      +    +S++ +  ++++       
Sbjct: 12  TPIKQI---FSDDAFAETIKDNLKKKSVTD----AVTQNELNSIDQIIANNSDIK----- 59

Query: 64  TTQELHNFTNMEYLKLDDSPLHISLLQSIASIFPL--LKNLSMIGCEVNGVIRGQDFPHS 121
           + Q +    N+  L L+           +  I PL  LKNL  +  + N V         
Sbjct: 60  SVQGIQYLPNVTKLFLNG--------NKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDL 111

Query: 122 KSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSLSYYTLGINSSETLNQGLCSLVHLQE 181
           K L+ L +E   I+            +  L+ L L       N    +   L  L  L  
Sbjct: 112 KKLKSLSLEHNGISDINGL-----VHLPQLESLYLGN-----NKITDI-TVLSRLTKLDT 160

Query: 182 LYIASNDLRGSLPWCMANMTSLRILD 207
           L +  N +   +   +A +T L+ L 
Sbjct: 161 LSLEDNQIS-DIV-PLAGLTKLQNLY 184

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 44.9 bits (106), Expect = 7e-06
 Identities = 35/209 (16%), Positives = 65/209 (31%), Gaps = 34/209 (16%)

Query: 1   MSFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSI--GSFSSLNSLYLSSNNFT 58
           MS N +  +     +     L++L LS       S  L  +      SL    +S N  +
Sbjct: 154 MSNNNLERIE-DDTFQATTSLQNLQLS-------SNRLTHVDLSLIPSLFHANVSYNLLS 205

Query: 59  ETVTITTQELHNFTNMEYLKLDDSPLHISLLQSIASIFPLLKNLSMIGCEVNGVIRGQDF 118
                    L     +E L    +   I++++    +   L  L +     N +      
Sbjct: 206 --------TLAIPIAVEELDASHN--SINVVR--GPVNVELTILKLQH---NNLTDTAWL 250

Query: 119 PHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSLSYYTLGINSSETLNQGLCSLVH 178
            +   L  +D+ +  +      +      M  L+ L +S      N    LN     +  
Sbjct: 251 LNYPGLVEVDLSYNEL---EKIMYHPFVKMQRLERLYISN-----NRLVALNLYGQPIPT 302

Query: 179 LQELYIASNDLRGSLPWCMANMTSLRILD 207
           L+ L ++ N L   +         L  L 
Sbjct: 303 LKVLDLSHNHLL-HVERNQPQFDRLENLY 330

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 44.7 bits (105), Expect = 7e-06
 Identities = 31/185 (16%), Positives = 69/185 (37%), Gaps = 25/185 (13%)

Query: 37  LLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDDSPLHISLLQSIASIF 96
             +   +   L    LS        T+   EL +   ++ L+ ++    ++++  + ++ 
Sbjct: 341 WCRDSATDEQLFRCELSVEK----STVLQSELESCKELQELEPENKWCLLTIILLMRALD 396

Query: 97  PL------------LKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFLQII 144
           PL            LK +  +       +R +    +  L+    +   + L    L ++
Sbjct: 397 PLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVL 456

Query: 145 S--ESMSSLKYLSLSYYTLGINSSETLNQGLCSLVHLQELYIASNDLRGSLPWCMANMTS 202
              E +  + +L LS+     N    L   L +L  L+ L  + N L  ++   +AN+  
Sbjct: 457 CHLEQLLLVTHLDLSH-----NRLRALPPALAALRCLEVLQASDNALE-NVD-GVANLPR 509

Query: 203 LRILD 207
           L+ L 
Sbjct: 510 LQELL 514

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.8 bits (105), Expect = 9e-06
 Identities = 38/244 (15%), Positives = 82/244 (33%), Gaps = 64/244 (26%)

Query: 4   NEINNLVVPQGYNGLRKLKSLDLSGVGVRD---------GSKLL-----QSIGSF-SSLN 48
            E+  L+  + Y     L  L      V++           K+L     + +  F S+  
Sbjct: 232 AELRRLLKSKPYE--NCLLVLL----NVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAAT 285

Query: 49  SLYLSSNNFTETVTIT-TQEL-HNFTNMEYLKL-----DDSPLHISLLQSIASIFP-LLK 100
           + ++S ++ + T+T    + L   + +     L       +P  +S++            
Sbjct: 286 TTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWD 345

Query: 101 NLSMIGCE-VNGVIRGQDFPHSKSLEHLDMEFMRIALNTSF--LQI------ISESMSSL 151
           N   + C+ +  +I         SL  L+    R      F  L +      I   + SL
Sbjct: 346 NWKHVNCDKLTTII-------ESSLNVLEPAEYR----KMFDRLSVFPPSAHIPTILLSL 394

Query: 152 KYLSLSYYTLGINSSETLNQGLC------SLVHLQELYIASNDLRGSLPWCMANMTSL-- 203
            +  +    + +  ++     L       S + +  +Y+   +L+  L     N  +L  
Sbjct: 395 IWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYL---ELKVKLE----NEYALHR 447

Query: 204 RILD 207
            I+D
Sbjct: 448 SIVD 451

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 44.2 bits (103), Expect = 1e-05
 Identities = 24/165 (14%), Positives = 53/165 (32%), Gaps = 18/165 (10%)

Query: 25  DLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDDSPL 84
            L+ + ++  + L        +L SL + S    ++V +      +  N+E L L     
Sbjct: 173 LLNNLKIKGTNNLSIGKKPRPNLKSLEIISGGLPDSV-VEDILGSDLPNLEKLVLYVGVE 231

Query: 85  HISLLQSIASIFPLLKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFLQII 144
                  +    PL                        +L+ L +           + + 
Sbjct: 232 DYGFDGDMNVFRPLFSK-----------------DRFPNLKWLGIVDAEEQNVVVEMFLE 274

Query: 145 SESMSSLKYLSLSYYTLGINSSETLNQGLCSLVHLQELYIASNDL 189
           S+ +  L+ + +S   L    +  L   +  + HL+ + +  N L
Sbjct: 275 SDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYL 319

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 44.0 bits (104), Expect = 1e-05
 Identities = 39/195 (20%), Positives = 70/195 (35%), Gaps = 13/195 (6%)

Query: 17  GLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSL-YLSSNNFTETVTITTQELHNFTNME 75
            L  L  L+L G   +     L     FS L  L  L   N      I  ++    T +E
Sbjct: 122 PLSSLTFLNLLGNPYKT----LGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLE 177

Query: 76  YLKLDDSPLHISLLQSI-ASIFPLLKNLSMIGCEVNG--VIRGQDFPHSKSLEHLDMEFM 132
            L++D S L     QS        ++N+S +   +    ++       + S+E L++   
Sbjct: 178 ELEIDASDL-----QSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDT 232

Query: 133 RIALNTSFLQIISESMSSLKYLSLSYYTLGINSSETLNQGLCSLVHLQELYIASNDLRGS 192
            +           E+ S +K  +     +   S   + + L  +  L EL  + N L+  
Sbjct: 233 DLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSV 292

Query: 193 LPWCMANMTSLRILD 207
                  +TSL+ + 
Sbjct: 293 PDGIFDRLTSLQKIW 307

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 42.8 bits (101), Expect = 3e-05
 Identities = 36/204 (17%), Positives = 70/204 (34%), Gaps = 29/204 (14%)

Query: 16  NGLRKLKSLDLSGVGVRDGSKLLQSI--GSF---SSLNSLYLSSNNFTETVTITTQELHN 70
           + L  L+ LDLS          L ++    F   SSL  L L  N +      +     +
Sbjct: 97  SSLGSLEHLDLS-------YNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSL--FSH 147

Query: 71  FTNMEYLKLDDSPLHISLLQSIAS-IFPLLKNLSMIGCEVN--GVIRGQDFPHSKSLEHL 127
            T ++ L++     ++     I    F  L  L  +  + +       +     +++ HL
Sbjct: 148 LTKLQILRV----GNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHL 203

Query: 128 DMEFMRIALNTSFLQIISESMSSLKYLSLSYYTLGINSSETLNQG----LCSLVHLQELY 183
            +   +       L+I  +  SS++ L L    L       L+ G    L      + + 
Sbjct: 204 ILHMKQH---ILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVK 260

Query: 184 IASNDLRGSLPWCMANMTSLRILD 207
           I    L   +   +  ++ L  L+
Sbjct: 261 ITDESLF-QVMKLLNQISGLLELE 283

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 43.9 bits (104), Expect = 1e-05
 Identities = 33/207 (15%), Positives = 64/207 (30%), Gaps = 30/207 (14%)

Query: 1   MSFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTET 60
           MS N +  +     +     L++L LS   +         +    SL    +S N  +  
Sbjct: 148 MSNNNLERIE-DDTFQATTSLQNLQLSSNRLTHVD-----LSLIPSLFHANVSYNLLS-- 199

Query: 61  VTITTQELHNFTNMEYLKLDDSPLHISLLQSIASIFPLLKNLSMIGCEVNGVIRGQDFPH 120
                  L     +E L    +   I++++    +   L  L +     N +       +
Sbjct: 200 ------TLAIPIAVEELDASHN--SINVVR--GPVNVELTILKLQH---NNLTDTAWLLN 246

Query: 121 SKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSLSYYTLGINSSETLNQGLCSLVHLQ 180
              L  +D+ +  +      +      M  L+ L +S      N    LN     +  L+
Sbjct: 247 YPGLVEVDLSYNEL---EKIMYHPFVKMQRLERLYISN-----NRLVALNLYGQPIPTLK 298

Query: 181 ELYIASNDLRGSLPWCMANMTSLRILD 207
            L ++ N L   +         L  L 
Sbjct: 299 VLDLSHNHLL-HVERNQPQFDRLENLY 324

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 41.2 bits (97), Expect = 1e-04
 Identities = 37/209 (17%), Positives = 68/209 (32%), Gaps = 58/209 (27%)

Query: 1   MSFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSI--GSFSSLNSLYLSSNNFT 58
           +S+N ++ L           ++ LD S          +  +       L  L L  NN T
Sbjct: 193 VSYNLLSTL------AIPIAVEELDASH-------NSINVVRGPVNVELTILKLQHNNLT 239

Query: 59  ETVTITTQELHNFTNMEYLKLDDSPLHISLLQSIASIFPLLKNLSMIGCEVNGVIRGQDF 118
           +     T  L N+  +  + L  + L                            I    F
Sbjct: 240 D-----TAWLLNYPGLVEVDLSYNELE--------------------------KIMYHPF 268

Query: 119 PHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSLSYYTLGINSSETLNQGLCSLVH 178
              + LE L +   R+      L +  + + +LK L LS+     N    + +       
Sbjct: 269 VKMQRLERLYISNNRL----VALNLYGQPIPTLKVLDLSH-----NHLLHVERNQPQFDR 319

Query: 179 LQELYIASNDLRGSLPWCMANMTSLRILD 207
           L+ LY+  N +  +L   ++   +L+ L 
Sbjct: 320 LENLYLDHNSIV-TLK--LSTHHTLKNLT 345

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 43.2 bits (102), Expect = 2e-05
 Identities = 29/168 (17%), Positives = 62/168 (36%), Gaps = 18/168 (10%)

Query: 43  SFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDDSPLHISLLQSIASIFPLLKNL 102
           SF  L  L L+ N  +    +     +N  N+  L L  +   + L+     +F  L NL
Sbjct: 54  SFPHLEELELNENIVS---AVEPGAFNNLFNLRTLGLRSN--RLKLIP--LGVFTGLSNL 106

Query: 103 SMIGCEVN--GVIRGQDFPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSLSYYT 160
           + +    N   ++    F    +L+ L++    +             ++SL+ L+L    
Sbjct: 107 TKLDISENKIVILLDYMFQDLYNLKSLEVGDNDL---VYISHRAFSGLNSLEQLTLEK-- 161

Query: 161 LGINSSETLNQG-LCSLVHLQELYIASNDLRGSLPWCMANMTSLRILD 207
               +  ++    L  L  L  L +   ++     +    +  L++L+
Sbjct: 162 ---CNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLE 206

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 42.8 bits (101), Expect = 4e-05
 Identities = 33/183 (18%), Positives = 64/183 (34%), Gaps = 30/183 (16%)

Query: 16  NGLRKLKSLDLSGVGVRDGSKLLQSI--GSFS---SLNSLYLSSNNFTETVTITTQELHN 70
           + L  L  L L           + +I   SF     L  L +S   + +T+T        
Sbjct: 173 SHLHGLIVLRLR-------HLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYG-- 223

Query: 71  FTNMEYLKLDDSPLHISLLQSIASIFPLLKNLSMIGCEVN--GVIRGQDFPHSKSLEHLD 128
             N+  L +     +++ +  +A     L  L  +    N    I G        L+ + 
Sbjct: 224 -LNLTSLSITHC--NLTAVPYLA--VRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQ 278

Query: 129 MEFMRIALNTSFLQIISESMSSLKYLSLSYYTLGINSSETLNQGLC-SLVHLQELYIASN 187
           +   ++             ++ L+ L++S      N   TL + +  S+ +L+ L + SN
Sbjct: 279 LVGGQL---AVVEPYAFRGLNYLRVLNVSG-----NQLTTLEESVFHSVGNLETLILDSN 330

Query: 188 DLR 190
            L 
Sbjct: 331 PLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 41.2 bits (97), Expect = 1e-04
 Identities = 41/215 (19%), Positives = 74/215 (34%), Gaps = 31/215 (14%)

Query: 1   MSFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSI--GSFS---SLNSLYLSSN 55
           +  N I  L     +     L+ L+L+         ++ ++  G+F+   +L +L L SN
Sbjct: 39  LGKNRIKTLN-QDEFASFPHLEELELN-------ENIVSAVEPGAFNNLFNLRTLGLRSN 90

Query: 56  NFTETVTITTQELHNFTNMEYLKLDDSPLHISLLQSIASIFPLLKNLSMIGCEVNGV--I 113
                  I        +N+  L + ++   I +L      F  L NL  +    N +  I
Sbjct: 91  RLKL---IPLGVFTGLSNLTKLDISEN--KIVILLDYM--FQDLYNLKSLEVGDNDLVYI 143

Query: 114 RGQDFPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSLSYYTLGINSSETLNQG- 172
             + F    SLE L +E   +   TS        +  L  L L +      +   +    
Sbjct: 144 SHRAFSGLNSLEQLTLEKCNL---TSIPTEALSHLHGLIVLRLRH-----LNINAIRDYS 195

Query: 173 LCSLVHLQELYIASNDLRGSLPWCMANMTSLRILD 207
              L  L+ L I+      ++        +L  L 
Sbjct: 196 FKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLS 230

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 43.0 bits (102), Expect = 2e-05
 Identities = 46/216 (21%), Positives = 90/216 (41%), Gaps = 29/216 (13%)

Query: 1   MSFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSI--GSFS---SLNSLYLSSN 55
           +SFN + +L     +    +L+ LDLS          +Q+I  G++     L++L L+ N
Sbjct: 35  LSFNPLRHLG-SYSFFSFPELQVLDLS-------RCEIQTIEDGAYQSLSHLSTLILTGN 86

Query: 56  NFTETVTITTQELHNFTNMEYLKLDDSPLHISLLQSIASIFPLLKNLSMIGCEVNGVIRG 115
                 ++        ++++ L   ++ L  SL          LK L++    +      
Sbjct: 87  PIQ---SLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLP 142

Query: 116 QDFPHSKSLEHLDMEFMRIALNTSFLQIISE----SMSSLKYLSLSYYTLGINSSETLNQ 171
           + F +  +LEHLD       L+++ +Q I       +  +  L+LS   L +N    +  
Sbjct: 143 EYFSNLTNLEHLD-------LSSNKIQSIYCTDLRVLHQMPLLNLSLD-LSLNPMNFIQP 194

Query: 172 GLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILD 207
           G    + L+EL + +N L+         +TSL+ + 
Sbjct: 195 GAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIW 230

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 43.3 bits (102), Expect = 2e-05
 Identities = 48/197 (24%), Positives = 73/197 (37%), Gaps = 10/197 (5%)

Query: 16  NGLRKLKSLDLSGVGVRDGSK--LLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTN 73
              R LK LDL    V D S   L     +++SL SL +S      + +   + +    N
Sbjct: 153 ATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPN 212

Query: 74  MEYLKLDDSPLHISLLQSIASIFPLLKNLSMIGCE---VNGVIRGQDFPHSKSLEHLDME 130
           ++ LKL+ +   +  L ++    P L+ L   G        V  G     S   E   + 
Sbjct: 213 LKSLKLNRAV-PLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLS 271

Query: 131 FMRIALNTSFLQIISESMSSLKYLSLSYYTLGINSSETLNQGLCSLVHLQELYIASNDLR 190
               A+    L  +    S L  L+LSY T+    S  L + LC    LQ L++      
Sbjct: 272 GFWDAVPAY-LPAVYSVCSRLTTLNLSYATV---QSYDLVKLLCQCPKLQRLWVLDYIED 327

Query: 191 GSLPWCMANMTSLRILD 207
             L    +    LR L 
Sbjct: 328 AGLEVLASTCKDLRELR 344

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 41.8 bits (98), Expect = 9e-05
 Identities = 40/199 (20%), Positives = 66/199 (33%), Gaps = 36/199 (18%)

Query: 16  NGLRKLKSLDLSGVGVRDGSKLLQSIG-SFSSLNSLYLSSNNFTETVTITTQELHNFTNM 74
           +    L+ + L  + V D    L+ I  SF +   L LSS                F+  
Sbjct: 102 SSYTWLEEIRLKRMVVTDDC--LELIAKSFKNFKVLVLSSCE-------------GFST- 145

Query: 75  EYLKLDDSPLHISLLQSIASIFPLLKNLSMIGCEVNGV---IRGQDFPHSKSLEHLDMEF 131
                         L +IA+    LK L +   +V+ V             SL  L++  
Sbjct: 146 ------------DGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISC 193

Query: 132 MRIALNTSFLQIISESMSSLKYLSLSYYTLGINSSETLNQGLCSLVHLQELY---IASND 188
           +   ++ S L+ +     +LK L L+   + +    TL Q    L  L           D
Sbjct: 194 LASEVSFSALERLVTRCPNLKSLKLN-RAVPLEKLATLLQRAPQLEELGTGGYTAEVRPD 252

Query: 189 LRGSLPWCMANMTSLRILD 207
           +   L   ++    LR L 
Sbjct: 253 VYSGLSVALSGCKELRCLS 271

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 42.6 bits (100), Expect = 3e-05
 Identities = 30/204 (14%), Positives = 56/204 (27%), Gaps = 5/204 (2%)

Query: 8   NLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQE 67
                + Y G R L+ L        D  +    I S S L  L + +      +      
Sbjct: 32  GAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLS-LKRLTVRAARIPSRILFGALR 90

Query: 68  LHNFTNMEYLKLDDSPLHISLLQSIASIFPL-LKNLSMIGCEVNGVIRGQDFPHSKSLEH 126
           +   + ++ L L++  +  +    +       L  L++                      
Sbjct: 91  VLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPG 150

Query: 127 LDMEFMRIALNTSFLQIISESMSSLKYLSLSYYTLGINSSETLNQGLCSLVHLQELYIAS 186
           L +  +  A + +F         +L  L LS                     LQ L + +
Sbjct: 151 LKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRN 210

Query: 187 NDLR---GSLPWCMANMTSLRILD 207
             +    G      A    L+ LD
Sbjct: 211 AGMETPSGVCSALAAARVQLQGLD 234

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 41.4 bits (97), Expect = 9e-05
 Identities = 36/195 (18%), Positives = 63/195 (32%), Gaps = 11/195 (5%)

Query: 20  KLKSLDLSGVGVRD-GSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLK 78
            LK L +    +          +   S L  L L +   T T      E     ++  L 
Sbjct: 69  SLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATG-PDLNILN 127

Query: 79  LDD---SPLHISLLQSIASIFPLLKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIA 135
           L +   +     L +    + P LK LS+           Q      +L  LD+      
Sbjct: 128 LRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQ-VRVFPALSTLDLSDNPEL 186

Query: 136 LNTSFL-QIISESMSSLKYLSLSYYTLGINS-SETLNQGLCSLVHLQELYIASNDLRGSL 193
                +  +      +L+ L+L     G+ + S   +    + V LQ L ++ N LR + 
Sbjct: 187 GERGLISALCPLKFPTLQVLALRN--AGMETPSGVCSALAAARVQLQGLDLSHNSLRDAA 244

Query: 194 P-WCMANMTSLRILD 207
                   + L  L+
Sbjct: 245 GAPSCDWPSQLNSLN 259

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 43.0 bits (101), Expect = 3e-05
 Identities = 34/194 (17%), Positives = 63/194 (32%), Gaps = 43/194 (22%)

Query: 16  NGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQEL-HNFTNM 74
                L+ L +S       ++L       S L  L+  +N  T         L    + +
Sbjct: 138 VLPPGLQELSVSD------NQLASLPALPSELCKLWAYNNQLT--------SLPMLPSGL 183

Query: 75  EYLKLDDSPLHISLLQSIASIFPLLKNLSMIGCEVNGVIRGQDFPHS-KSLEHLDMEFMR 133
           + L + D     + L S+ ++   L  L      +         P     L+ L      
Sbjct: 184 QELSVSD-----NQLASLPTLPSELYKLWAYNNRLT------SLPALPSGLKELI----- 227

Query: 134 IALNTSFLQIISESMSSLKYLSLSYYTLGINSSETLNQGLCSLVHLQELYIASNDLRGSL 193
             ++ + L  +    S LK L +S      N   +L         L  L +  N L   L
Sbjct: 228 --VSGNRLTSLPVLPSELKELMVSG-----NRLTSLPMLPSG---LLSLSVYRNQLT-RL 276

Query: 194 PWCMANMTSLRILD 207
           P  + +++S   ++
Sbjct: 277 PESLIHLSSETTVN 290

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 39.5 bits (92), Expect = 4e-04
 Identities = 34/204 (16%), Positives = 59/204 (28%), Gaps = 47/204 (23%)

Query: 18  LRKLKSLDLSGVGVRDGSKLLQSI-GSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEY 76
              + +L +           L S+      L +L +S N  T               +  
Sbjct: 60  PAHITTLVIPDNN-------LTSLPALPPELRTLEVSGNQLTS----LPVLPPGLLELSI 108

Query: 77  LKLDDSPLHISL------------LQSIASIFPLLKNLSMIGCEVNGVIRGQDFPHS-KS 123
                + L                L S+  + P L+ LS+   ++         P     
Sbjct: 109 FSNPLTHLPALPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQLA------SLPALPSE 162

Query: 124 LEHLDMEFMRIALNTSFLQIISESMSSLKYLSLSYYTLGINSSETLNQGLCSLVHLQELY 183
           L  L     +       L  +    S L+ LS+S      N   +L         L +L+
Sbjct: 163 LCKLWAYNNQ-------LTSLPMLPSGLQELSVSD-----NQLASLPTLPSE---LYKLW 207

Query: 184 IASNDLRGSLPWCMANMTSLRILD 207
             +N L  SLP   + +  L +  
Sbjct: 208 AYNNRLT-SLPALPSGLKELIVSG 230

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 41.5 bits (98), Expect = 4e-05
 Identities = 23/172 (13%), Positives = 62/172 (36%), Gaps = 25/172 (14%)

Query: 18  LRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYL 77
           +  L  + L+ + V D    L  I    ++  L +++ + T         +   +N+E L
Sbjct: 43  MNSLTYITLANINVTD----LTGIEYAHNIKDLTINNIHATN-----YNPISGLSNLERL 93

Query: 78  KLDDSPLHISLLQSIASIFPLLKNLSMIGCEVNGV--IRGQDFPHSKSLEHLDMEFMRIA 135
           ++    +    + +++     L +L+++    +               +  +D+ +    
Sbjct: 94  RIMGKDVTSDKIPNLSG----LTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAI 149

Query: 136 LNTSFLQIISESMSSLKYLSLSYYTLGINSSETLNQGLCSLVHLQELYIASN 187
            +   L    +++  LK L++ +     +       G+     L +LY  S 
Sbjct: 150 TDIMPL----KTLPELKSLNIQF-----DGVHDYR-GIEDFPKLNQLYAFSQ 191

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 42.2 bits (99), Expect = 5e-05
 Identities = 36/198 (18%), Positives = 76/198 (38%), Gaps = 11/198 (5%)

Query: 14  GYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTN 73
            +    +++ +DLS   +   + L   +   S L +L L     +         L   +N
Sbjct: 88  EHFSPFRVQHMDLSNSVIEVST-LHGILSQCSKLQNLSLEGLRLS---DPIVNTLAKNSN 143

Query: 74  MEYLKLDD-SPLHISLLQSIASIFPLLKNLSMIGCE--VNGVIRGQDFPHSKSLEHLDME 130
           +  L L   S      LQ++ S    L  L++  C       ++      S+++  L++ 
Sbjct: 144 LVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLS 203

Query: 131 FMRIALNTSFLQIISESMSSLKYLSLSYYTLGINSSETLNQGLCSLVHLQELYIAS-NDL 189
             R  L  S L  +     +L +L LS  ++ +  ++   +    L +LQ L ++   D+
Sbjct: 204 GYRKNLQKSDLSTLVRRCPNLVHLDLS-DSVML-KNDCFQE-FFQLNYLQHLSLSRCYDI 260

Query: 190 RGSLPWCMANMTSLRILD 207
                  +  + +L+ L 
Sbjct: 261 IPETLLELGEIPTLKTLQ 278

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 39.5 bits (92), Expect = 4e-04
 Identities = 25/121 (20%), Positives = 50/121 (41%), Gaps = 2/121 (1%)

Query: 38  LQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDDSPLHISLLQSIASIFP 97
           L    +   L+   ++       +     E  +   ++++ L +S + +S L  I S   
Sbjct: 59  LHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCS 118

Query: 98  LLKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSLS 157
            L+NLS+ G  ++  I       + +L  L++       +   LQ +  S S L  L+LS
Sbjct: 119 KLQNLSLEGLRLSDPI-VNTLAKNSNLVRLNLSGCS-GFSEFALQTLLSSCSRLDELNLS 176

Query: 158 Y 158
           +
Sbjct: 177 W 177

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 40.9 bits (96), Expect = 7e-05
 Identities = 30/141 (21%), Positives = 57/141 (40%), Gaps = 12/141 (8%)

Query: 70  NFTNMEYLKLDDSPLHISLLQSIASIFPLLKNLSMIGCEVNGVIRGQDFPHSKSLEHLDM 129
               +  L LD+   +   ++ + + F  L+ LS+I   +  V    + P    L+ L++
Sbjct: 22  TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV---SNLPKLPKLKKLEL 78

Query: 130 EFMRIALNTSFLQIISESMSSLKYLSLSYYTLGINSSETLNQGLCSLVHLQELYIASN-- 187
              RI      L +++E + +L +L+LS     +    TL   L  L  L+ L + +   
Sbjct: 79  SENRI---FGGLDMLAEKLPNLTHLNLSGN--KLKDISTLEP-LKKLECLKSLDLFNCEV 132

Query: 188 -DLRGSLPWCMANMTSLRILD 207
            +L          +  L  LD
Sbjct: 133 TNLNDYRESVFKLLPQLTYLD 153

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 41.9 bits (99), Expect = 7e-05
 Identities = 33/181 (18%), Positives = 66/181 (36%), Gaps = 15/181 (8%)

Query: 21  LKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTET-VTITTQELHNFTNMEYLKL 79
           ++SLD+    + D     + +        + L     TE      +  L     +  L L
Sbjct: 5   IQSLDIQCEELSDAR-WAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 63

Query: 80  DDSPLHISLLQSIASIF----PLLKNLSMIGCEVNGV---IRGQDFPHSKSLEHLDMEFM 132
             + L    +  +          ++ LS+  C + G    +         +L+ L +   
Sbjct: 64  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN 123

Query: 133 RIALNTSFLQIISESM----SSLKYLSLSYYTLGINSSETLNQGLCSLVHLQELYIASND 188
            +    + LQ++ E +      L+ L L Y +L   S E L   L +    +EL +++ND
Sbjct: 124 LL--GDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND 181

Query: 189 L 189
           +
Sbjct: 182 I 182

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 39.2 bits (92), Expect = 5e-04
 Identities = 32/186 (17%), Positives = 61/186 (32%), Gaps = 13/186 (6%)

Query: 17  GLRKLKSLDLSGVGVRD-GSKLLQSI--GSFSSLNSLYLSSNNFT-ETVTITTQELHNFT 72
                K L +S   + + G ++L      S   L +L L S   T +        + +  
Sbjct: 168 AKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKA 227

Query: 73  NMEYLKLDDSPLH----ISLLQSIASIFPLLKNLSMIGCEV--NGVIR-GQDFPHSKSLE 125
           ++  L L  + L       L   +      L+ L +  C +   G     +     +SL+
Sbjct: 228 SLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLK 287

Query: 126 HLDMEFMRIALN--TSFLQIISESMSSLKYLSLSYYTLGINSSETLNQGLCSLVHLQELY 183
            L +    +         + + E    L+ L +   +         +  L     L EL 
Sbjct: 288 ELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQ 347

Query: 184 IASNDL 189
           I++N L
Sbjct: 348 ISNNRL 353

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 41.2 bits (97), Expect = 9e-05
 Identities = 36/206 (17%), Positives = 71/206 (34%), Gaps = 36/206 (17%)

Query: 4   NEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTI 63
             IN +       GL      +L    V D    L S    S + +    ++N       
Sbjct: 7   TPINQV---FPDPGLANAVKQNLGKQSVTD----LVSQKELSGVQNFNGDNSNIQ----- 54

Query: 64  TTQELHNFTNMEYLKLDDSPLHISLLQSIASIFPL--LKNLSMIGCEVNGVIRGQDFPHS 121
           +   +  FTN++ L L            I+ + PL  L  L  +    N  ++  +   S
Sbjct: 55  SLAGMQFFTNLKELHLSH--------NQISDLSPLKDLTKLEELSVNRNR-LKNLNGIPS 105

Query: 122 KSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSLSYYTLGINSSETLNQGLCSLVHLQE 181
             L  L ++   +    S        + +L+ LS+       N  +++   L  L  L+ 
Sbjct: 106 ACLSRLFLDNNELRDTDSL-----IHLKNLEILSIRN-----NKLKSI-VMLGFLSKLEV 154

Query: 182 LYIASNDLRGSLPWCMANMTSLRILD 207
           L +  N++  +    +  +  +  +D
Sbjct: 155 LDLHGNEITNTGG--LTRLKKVNWID 178

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 41.2 bits (97), Expect = 1e-04
 Identities = 38/190 (20%), Positives = 67/190 (35%), Gaps = 31/190 (16%)

Query: 27  SGVGVRDGSKLLQSI--GSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDDSPL 84
           S + V    + L ++          L+LS N      T +   L  +T +  L LD + L
Sbjct: 11  SHLEVNCDKRNLTALPPDLPKDTTILHLSENLLY---TFSLATLMPYTRLTQLNLDRAEL 67

Query: 85  HISLLQSIASIFPLLKNLSMIGCEVNGVIRGQD-FPHSKSLEHLDMEFMRIALNTSFLQI 143
                 +   +   L  L  +    N +           +L  LD       ++ + L  
Sbjct: 68  ------TKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLD-------VSFNRLTS 114

Query: 144 ISE----SMSSLKYLSLSYYTLGINSSETLNQGLC-SLVHLQELYIASNDLRGSLPWCM- 197
           +       +  L+ L L       N  +TL  GL      L++L +A+N+L   LP  + 
Sbjct: 115 LPLGALRGLGELQELYLKG-----NELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLL 168

Query: 198 ANMTSLRILD 207
             + +L  L 
Sbjct: 169 NGLENLDTLL 178

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 41.1 bits (97), Expect = 1e-04
 Identities = 48/184 (26%), Positives = 80/184 (43%), Gaps = 32/184 (17%)

Query: 35  SKLLQSI--GSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDDSPLHISLLQSI 92
           SK L +I     +    L L SN  +   ++ ++  H  T +  L L+D+ L     Q++
Sbjct: 25  SKKLTAIPSNIPADTKKLDLQSNKLS---SLPSKAFHRLTKLRLLYLNDNKL-----QTL 76

Query: 93  -ASIFPLLKNLSMIGCEVNG--VIRGQDFPHSKSLEHLDMEFMRIALNTSFLQIISE--- 146
            A IF  LKNL  +    N    +    F    +L  L        L+ + L+ +     
Sbjct: 77  PAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELR-------LDRNQLKSLPPRVF 129

Query: 147 -SMSSLKYLSLSYYTLGINSSETLNQGLC-SLVHLQELYIASNDLRGSLPWCM-ANMTSL 203
            S++ L YLSL Y     N  ++L +G+   L  L+EL + +N L+  +P      +T L
Sbjct: 130 DSLTKLTYLSLGY-----NELQSLPKGVFDKLTSLKELRLYNNQLK-RVPEGAFDKLTEL 183

Query: 204 RILD 207
           + L 
Sbjct: 184 KTLK 187

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 41.1 bits (97), Expect = 1e-04
 Identities = 31/172 (18%), Positives = 59/172 (34%), Gaps = 25/172 (14%)

Query: 43  SFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDDSPLHISLLQSIASIFPLLKNL 102
           +  +L  L+L SN       I          +E L L D+   +  +    + F  L  L
Sbjct: 54  ACRNLTILWLHSNVLA---RIDAAAFTGLALLEQLDLSDNA-QLRSVD--PATFHGLGRL 107

Query: 103 SMIGCEVNGV--IRGQDFPHSKSLEHLDMEFMRIALNTSFLQIISE----SMSSLKYLSL 156
             +  +  G+  +    F    +L++L        L  + LQ + +     + +L +L L
Sbjct: 108 HTLHLDRCGLQELGPGLFRGLAALQYLY-------LQDNALQALPDDTFRDLGNLTHLFL 160

Query: 157 SYYTLGINSSETLNQG-LCSLVHLQELYIASNDLRGSLPWCMANMTSLRILD 207
                  N   ++ +     L  L  L +  N +    P    ++  L  L 
Sbjct: 161 HG-----NRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLY 207

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 39.2 bits (92), Expect = 4e-04
 Identities = 41/207 (19%), Positives = 69/207 (33%), Gaps = 59/207 (28%)

Query: 12  PQGYNGLRKLKSLDLSGVGVRDGSKLLQSI--GSFS---SLNSLYLSSNNFTETVTITTQ 66
              + GL  L+ LDLS       +  L+S+   +F     L++L+L          +   
Sbjct: 73  AAAFTGLALLEQLDLSD------NAQLRSVDPATFHGLGRLHTLHLDRCGLQ---ELGPG 123

Query: 67  ELHNFTNMEYLKLDDSPLHISLLQSIASIFPLLKNLSMIGCEVNGVIRGQDFPHSKSLEH 126
                  ++YL L D+ L                            +    F    +L H
Sbjct: 124 LFRGLAALQYLYLQDNALQ--------------------------ALPDDTFRDLGNLTH 157

Query: 127 LDMEFMRIALNTSFLQIISE----SMSSLKYLSLSYYTLGINSSETLNQG-LCSLVHLQE 181
           L +   RI         + E     + SL  L L       N    ++      L  L  
Sbjct: 158 LFLHGNRI-------SSVPERAFRGLHSLDRLLLHQ-----NRVAHVHPHAFRDLGRLMT 205

Query: 182 LYIASNDLRGSLPW-CMANMTSLRILD 207
           LY+ +N+L  +LP   +A + +L+ L 
Sbjct: 206 LYLFANNLS-ALPTEALAPLRALQYLR 231

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 41.1 bits (96), Expect = 1e-04
 Identities = 38/224 (16%), Positives = 71/224 (31%), Gaps = 48/224 (21%)

Query: 15  YNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFT---ETVTITTQEL--- 68
           ++   K +   L G    +   LL+     +  + L L+  N +   + +      L   
Sbjct: 30  FSAWDKWEKQALPGENRNEAVSLLKEC-LINQFSELQLNRLNLSSLPDNLPPQITVLEIT 88

Query: 69  HN--------FTNMEYLKLDDS-----PLHISLLQS-------IASIFPLLKNLSMIGCE 108
            N          ++EYL   D+     P   + L+        +  +  L   L  I  +
Sbjct: 89  QNALISLPELPASLEYLDACDNRLSTLPELPASLKHLDVDNNQLTMLPELPALLEYINAD 148

Query: 109 VNGVIRGQDFPHS-KSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSLSYYTLGINSSE 167
            N   +    P    SLE L +   +       L  + E   SL+ L +S      N  E
Sbjct: 149 NN---QLTMLPELPTSLEVLSVRNNQ-------LTFLPELPESLEALDVST-----NLLE 193

Query: 168 TLNQGLCSLVHLQE----LYIASNDLRGSLPWCMANMTSLRILD 207
           +L        H +E         N +   +P  + ++     + 
Sbjct: 194 SLPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTII 236

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 41.1 bits (96), Expect = 1e-04
 Identities = 29/198 (14%), Positives = 65/198 (32%), Gaps = 14/198 (7%)

Query: 16  NGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNME 75
           N LR+LKS+    + V D      +      L +L L   +   T  +    + +   ++
Sbjct: 109 NNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGL-LSIVTHCRKIK 167

Query: 76  YLKLDDSPLHISLLQSIASIFPLLKNLSMIGCEVNGVIRGQD------FPHSKSLEHLDM 129
            L +++S       + +  +     +L ++   +    +           + +SL  + +
Sbjct: 168 TLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKV 227

Query: 130 EFMRIALNTSFLQIISESMSSLKYLSLSYYTLGINSSETLNQ--GLCSLVHLQELYIASN 187
               I     F +      ++L+          I   E          L  L   Y+  N
Sbjct: 228 GDFEILELVGFFKA----AANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPN 283

Query: 188 DLRGSLPWCMANMTSLRI 205
           ++    P+  A +  L +
Sbjct: 284 EMPILFPFA-AQIRKLDL 300

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 39.9 bits (93), Expect = 3e-04
 Identities = 17/173 (9%), Positives = 53/173 (30%), Gaps = 10/173 (5%)

Query: 17  GLRKLKSLDLSGVGVRDGS--KLLQSIGSFSSLNSLYLSS-NNFTETVTIT--TQELHNF 71
           G ++L+ + +    + + S   +   + +      + L      T+          L   
Sbjct: 376 GCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGC 435

Query: 72  TNMEYLKLDDSPLHISL--LQSIASIFPLLKNLSMIGCEVNGVIRGQDFPHSKSLEHLDM 129
             +           ++   L  I    P ++ + +     +     +      +L+ L+M
Sbjct: 436 KKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEM 495

Query: 130 EFMRIALNTSFLQIISESMSSLKYLSLSYYTLGINSSETLNQGLCSLVHLQEL 182
                  +   +      + SL+YL +  Y   +   + +        +++ +
Sbjct: 496 RGCCF--SERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYW-NIELI 545

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 40.5 bits (95), Expect = 2e-04
 Identities = 29/217 (13%), Positives = 62/217 (28%), Gaps = 30/217 (13%)

Query: 21  LKSLDLS--GVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTIT-TQELHNFTNMEYL 77
           ++   L    +   D   +   +    S+  + LS N          ++ + +  ++E  
Sbjct: 6   IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 65

Query: 78  KLDD------SPLHISLLQSIASIFPLLKNLSMIGCEVN-----GVIR-GQDFPHSKSLE 125
           +  D             L+ +         L  +    N                   LE
Sbjct: 66  EFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLE 125

Query: 126 HLDMEFMRI----------ALNTSFLQIISESMSSLKYLSLSYYTLGINSSETLNQGLCS 175
           HL +    +          AL    +   +++   L+ +      L   S +   +   S
Sbjct: 126 HLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQS 185

Query: 176 LVHLQELYIASNDLR-----GSLPWCMANMTSLRILD 207
              L  + +  N +R       L   +A    L++LD
Sbjct: 186 HRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLD 222

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 38.7 bits (90), Expect = 8e-04
 Identities = 30/168 (17%), Positives = 56/168 (33%), Gaps = 29/168 (17%)

Query: 1   MSFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSI--GSFS---SLNSLYLSSN 55
           +S N ++ L        L  L SL LS          L  I   +F    +L  L LSSN
Sbjct: 46  LSHNNLSRLRAEWTPTRLTNLHSLLLSHNH-------LNFISSEAFVPVPNLRYLDLSSN 98

Query: 56  NFTETVTITTQELHNFTNMEYLKLDDSPLHISLLQSI-ASIF---PLLKNLSMIGCEVNG 111
           +     T+      +   +E L L ++      +  +  + F     L+ L +   +++ 
Sbjct: 99  HLH---TLDEFLFSDLQALEVLLLYNNH-----IVVVDRNAFEDMAQLQKLYLSQNQISR 150

Query: 112 VIRG--QDFPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSLS 157
                 +D      L  LD+   ++           + + +     L 
Sbjct: 151 FPVELIKDGNKLPKLMLLDLSSNKL---KKLPLTDLQKLPAWVKNGLY 195

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	207
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.91
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.9
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.9
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.9
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.89
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.89
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.88
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.86
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.86
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.86
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.86
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.85
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.85
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.85
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.85
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.84
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.84
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.84
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.84
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.83
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.83
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.83
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.83
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.83
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.83
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.83
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.83
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.83
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.82
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.82
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.82
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.82
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.82
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.82
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.81
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.81
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.81
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.81
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.81
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.81
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.8
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.8
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.8
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.8
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.8
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.8
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.8
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.79
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.79
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.79
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.79
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.79
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.79
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.79
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.79
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.78
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.78
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.78
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.78
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.77
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.77
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.77
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.76
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.76
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.76
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.75
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.75
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.75
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.75
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.74
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.74
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.74
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.73
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.73
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.73
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.73
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.73
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.73
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.72
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.72
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.72
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.72
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.72
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.71
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.71
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.7
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.7
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.7
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.7
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.7
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.7
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.69
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.69
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.69
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.69
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.69
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.67
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.66
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.66
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.65
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.65
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.65
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.65
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.63
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.61
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.61
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.61
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.61
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.61
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.6
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.59
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.59
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.59
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.57
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.56
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.55
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.55
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.54
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.54
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.54
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.53
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.51
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.49
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.48
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.48
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.48
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.47
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.46
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.43
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.4
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.37
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.36
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.32
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.32
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.32
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.31
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.29
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.23
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.23
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.21
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.18
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.12
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.11
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.06
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.96
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.89
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.8
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.76
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.71
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.53
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.45
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.29
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.27
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.24
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.84
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	97.84
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.74
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	97.66
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	97.65
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	97.47
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	97.32
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	97.09
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.9
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.17

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.91  E-value=3e-24  Score=188.75  Aligned_cols=194  Identities=22%  Similarity=0.236  Sum_probs=141.0

Q ss_pred             CCCCccCceecCccccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcC
Q 038163            1 MSFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLD   80 (207)
Q Consensus         1 l~~n~~~~~~p~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~   80 (207)
                      |++|.+.+.+|. .+..+++|++|++++|.+  .+.+|..+..+++|++|++++|.+++..|   ..+..+++|++|+++
T Consensus       449 L~~n~l~~~~p~-~~~~l~~L~~L~L~~N~l--~~~~p~~l~~l~~L~~L~L~~N~l~~~~p---~~~~~l~~L~~L~L~  522 (768)
T 3rgz_A          449 LWLNMLEGEIPQ-ELMYVKTLETLILDFNDL--TGEIPSGLSNCTNLNWISLSNNRLTGEIP---KWIGRLENLAILKLS  522 (768)
T ss_dssp             CCSSCCCSCCCG-GGGGCTTCCEEECCSSCC--CSCCCGGGGGCTTCCEEECCSSCCCSCCC---GGGGGCTTCCEEECC
T ss_pred             CCCCcccCcCCH-HHcCCCCceEEEecCCcc--cCcCCHHHhcCCCCCEEEccCCccCCcCC---hHHhcCCCCCEEECC
Confidence            345566655553 356666666666666666  45566666666777777777777666666   566666777777777


Q ss_pred             CCCCChHHHHhhcccccc-----cCCcccceecccccc------------------------------------------
Q 038163           81 DSPLHISLLQSIASIFPL-----LKNLSMIGCEVNGVI------------------------------------------  113 (207)
Q Consensus        81 ~~~~~~~~~~~l~~l~~L-----~~n~~~~~~~~~~~~------------------------------------------  113 (207)
                      +|.+.+..+..++.+++|     ++|.+.+.+|..-+.                                          
T Consensus       523 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  602 (768)
T 3rgz_A          523 NNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSE  602 (768)
T ss_dssp             SSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGG
T ss_pred             CCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccch
Confidence            777666666666555554     566665544431000                                          


Q ss_pred             ---------------------ccCCCCCCCccceecccccccccCchhHHHHHhcCCCccEEEccCCccCcccccchhhh
Q 038163          114 ---------------------RGQDFPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSLSYYTLGINSSETLNQG  172 (207)
Q Consensus       114 ---------------------~~~~~~~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L~l~~n~~~~~~~i~~~~~  172 (207)
                                           -...+..+++|+.|+++  +|.+++.+|..++ .++.|+.|++++|.++  +.+ |. .
T Consensus       603 ~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs--~N~l~g~ip~~l~-~l~~L~~L~Ls~N~l~--g~i-p~-~  675 (768)
T 3rgz_A          603 QLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMS--YNMLSGYIPKEIG-SMPYLFILNLGHNDIS--GSI-PD-E  675 (768)
T ss_dssp             GGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECC--SSCCBSCCCGGGG-GCTTCCEEECCSSCCC--SCC-CG-G
T ss_pred             hhhccccccccccccceecccCchhhhccccccEEECc--CCcccccCCHHHh-ccccCCEEeCcCCccC--CCC-Ch-H
Confidence                                 00135567789999999  9999999999998 9999999999999999  888 88 8


Q ss_pred             hcCCCCCceEEecCCcCCCCccccccCCCCCccCC
Q 038163          173 LCSLVHLQELYIASNDLRGSLPWCMANMTSLRILD  207 (207)
Q Consensus       173 ~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~  207 (207)
                      ++.+++|+.||+++|++.+.+|..+..+++|++||
T Consensus       676 l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~  710 (768)
T 3rgz_A          676 VGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEID  710 (768)
T ss_dssp             GGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEE
T ss_pred             HhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEE
Confidence            99999999999999999999999999999998764

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.90  E-value=1.3e-24  Score=172.46  Aligned_cols=180  Identities=17%  Similarity=0.205  Sum_probs=81.4

Q ss_pred             CccCceecCccccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcCCCC
Q 038163            4 NEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDDSP   83 (207)
Q Consensus         4 n~~~~~~p~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~~~~   83 (207)
                      |.+.+.+|.. |..+++|++|++++|.+  ...+|..+..+++|++|++++|.+++..|   ..+..+++|++|++++|.
T Consensus        87 n~l~~~~p~~-l~~l~~L~~L~Ls~n~l--~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p---~~~~~l~~L~~L~L~~N~  160 (313)
T 1ogq_A           87 NNLVGPIPPA-IAKLTQLHYLYITHTNV--SGAIPDFLSQIKTLVTLDFSYNALSGTLP---PSISSLPNLVGITFDGNR  160 (313)
T ss_dssp             TTEESCCCGG-GGGCTTCSEEEEEEECC--EEECCGGGGGCTTCCEEECCSSEEESCCC---GGGGGCTTCCEEECCSSC
T ss_pred             CcccccCChh-HhcCCCCCEEECcCCee--CCcCCHHHhCCCCCCEEeCCCCccCCcCC---hHHhcCCCCCeEECcCCc
Confidence            4444444422 44555555555555555  33444555555555555555555554444   445555555555555555


Q ss_pred             CChHHHHhhcccc-cc-----cCCcccceeccccccccCCCCCCCccceecccccccccCchhHHHHHhcCCCccEEEcc
Q 038163           84 LHISLLQSIASIF-PL-----LKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSLS  157 (207)
Q Consensus        84 ~~~~~~~~l~~l~-~L-----~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L~l~  157 (207)
                      +.+..+..+..+. .|     ++|.+.+..|.       .+..+. |+.|+++  +|.+++..+..+. .+++|+.|+++
T Consensus       161 l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~-------~~~~l~-L~~L~Ls--~N~l~~~~~~~~~-~l~~L~~L~L~  229 (313)
T 1ogq_A          161 ISGAIPDSYGSFSKLFTSMTISRNRLTGKIPP-------TFANLN-LAFVDLS--RNMLEGDASVLFG-SDKNTQKIHLA  229 (313)
T ss_dssp             CEEECCGGGGCCCTTCCEEECCSSEEEEECCG-------GGGGCC-CSEEECC--SSEEEECCGGGCC-TTSCCSEEECC
T ss_pred             ccCcCCHHHhhhhhcCcEEECcCCeeeccCCh-------HHhCCc-ccEEECc--CCcccCcCCHHHh-cCCCCCEEECC
Confidence            5444444444333 22     44444443333       333332 4444444  4444333333333 34444444444


Q ss_pred             CCccCcccccchhhhhcCCCCCceEEecCCcCCCCccccccCCCCCcc
Q 038163          158 YYTLGINSSETLNQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRI  205 (207)
Q Consensus       158 ~n~~~~~~~i~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~  205 (207)
                      +|.++  +.+ +  .+..+++|++|++++|++.+.+|..+..+++|+.
T Consensus       230 ~N~l~--~~~-~--~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~  272 (313)
T 1ogq_A          230 KNSLA--FDL-G--KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHS  272 (313)
T ss_dssp             SSEEC--CBG-G--GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCE
T ss_pred             CCcee--eec-C--cccccCCCCEEECcCCcccCcCChHHhcCcCCCE
Confidence            44443  222 1  2334444444444444444444444444444443

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.90  E-value=1e-23  Score=185.36  Aligned_cols=187  Identities=24%  Similarity=0.313  Sum_probs=126.2

Q ss_pred             CCCccCceecCccccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcCC
Q 038163            2 SFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDD   81 (207)
Q Consensus         2 ~~n~~~~~~p~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~~   81 (207)
                      ++|.+.+.+| ..+..+++|++|++++|.+  .+.+|..+..+++|++|++++|.+++..|   ..+..+++|++|++++
T Consensus       426 s~N~l~~~~p-~~l~~l~~L~~L~L~~n~l--~~~~p~~~~~l~~L~~L~L~~N~l~~~~p---~~l~~l~~L~~L~L~~  499 (768)
T 3rgz_A          426 SFNYLSGTIP-SSLGSLSKLRDLKLWLNML--EGEIPQELMYVKTLETLILDFNDLTGEIP---SGLSNCTNLNWISLSN  499 (768)
T ss_dssp             CSSEEESCCC-GGGGGCTTCCEEECCSSCC--CSCCCGGGGGCTTCCEEECCSSCCCSCCC---GGGGGCTTCCEEECCS
T ss_pred             cCCcccCccc-HHHhcCCCCCEEECCCCcc--cCcCCHHHcCCCCceEEEecCCcccCcCC---HHHhcCCCCCEEEccC
Confidence            4455554444 2345555555555555555  34555555566666666666666665555   5566666666666666


Q ss_pred             CCCChHHHHhhcccccc-----cCCcccceeccccccccCCCCCCCccceecccccccccCchhHHHHHh----------
Q 038163           82 SPLHISLLQSIASIFPL-----LKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFLQIISE----------  146 (207)
Q Consensus        82 ~~~~~~~~~~l~~l~~L-----~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~~~~~l~~----------  146 (207)
                      |.+.+..+..++.+++|     ++|.+.+.+|.       .+..+++|+.|+++  +|.+++.+|..+..          
T Consensus       500 N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~-------~l~~l~~L~~L~Ls--~N~l~g~ip~~~~~~~~~~~~~~~  570 (768)
T 3rgz_A          500 NRLTGEIPKWIGRLENLAILKLSNNSFSGNIPA-------ELGDCRSLIWLDLN--TNLFNGTIPAAMFKQSGKIAANFI  570 (768)
T ss_dssp             SCCCSCCCGGGGGCTTCCEEECCSSCCEEECCG-------GGGGCTTCCEEECC--SSEEESBCCGGGGTTTTCBCCSTT
T ss_pred             CccCCcCChHHhcCCCCCEEECCCCcccCcCCH-------HHcCCCCCCEEECC--CCccCCcCChHHhcccchhhhhcc
Confidence            66665555555555554     66677666666       77778888888888  88776555543320          


Q ss_pred             -----------------------------------------------------------cCCCccEEEccCCccCccccc
Q 038163          147 -----------------------------------------------------------SMSSLKYLSLSYYTLGINSSE  167 (207)
Q Consensus       147 -----------------------------------------------------------~~~~L~~L~l~~n~~~~~~~i  167 (207)
                                                                                 .+++|+.|++++|.++  +.+
T Consensus       571 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~--g~i  648 (768)
T 3rgz_A          571 AGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLS--GYI  648 (768)
T ss_dssp             CSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCB--SCC
T ss_pred             ccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCccc--ccC
Confidence                                                                       1346778888888888  788


Q ss_pred             chhhhhcCCCCCceEEecCCcCCCCccccccCCCCCccCC
Q 038163          168 TLNQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILD  207 (207)
Q Consensus       168 ~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~  207 (207)
                       |. .++.+++|+.|++++|++.+.+|..++.+++|++||
T Consensus       649 -p~-~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~Ld  686 (768)
T 3rgz_A          649 -PK-EIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILD  686 (768)
T ss_dssp             -CG-GGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEE
T ss_pred             -CH-HHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEE
Confidence             87 888889999999999999988898899888888765

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.90  E-value=3.1e-24  Score=170.23  Aligned_cols=185  Identities=17%  Similarity=0.253  Sum_probs=159.6

Q ss_pred             CCCCccCceecCccccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCC-CccEEEc
Q 038163            1 MSFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFT-NMEYLKL   79 (207)
Q Consensus         1 l~~n~~~~~~p~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~-~L~~L~l   79 (207)
                      |++|.+.+.+|. .|.++++|++|++++|.+  ...+|..+..+++|++|++++|.+++..|   ..+..++ .|++|++
T Consensus       108 Ls~n~l~~~~p~-~~~~l~~L~~L~Ls~N~l--~~~~p~~~~~l~~L~~L~L~~N~l~~~~p---~~l~~l~~~L~~L~L  181 (313)
T 1ogq_A          108 ITHTNVSGAIPD-FLSQIKTLVTLDFSYNAL--SGTLPPSISSLPNLVGITFDGNRISGAIP---DSYGSFSKLFTSMTI  181 (313)
T ss_dssp             EEEECCEEECCG-GGGGCTTCCEEECCSSEE--ESCCCGGGGGCTTCCEEECCSSCCEEECC---GGGGCCCTTCCEEEC
T ss_pred             CcCCeeCCcCCH-HHhCCCCCCEEeCCCCcc--CCcCChHHhcCCCCCeEECcCCcccCcCC---HHHhhhhhcCcEEEC
Confidence            357888887774 579999999999999999  56889999999999999999999998888   7888888 9999999


Q ss_pred             CCCCCChHHHHhhcccc--cc--cCCcccceeccccccccCCCCCCCccceecccccccccCchhHHHHHhcCCCccEEE
Q 038163           80 DDSPLHISLLQSIASIF--PL--LKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLS  155 (207)
Q Consensus        80 ~~~~~~~~~~~~l~~l~--~L--~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L~  155 (207)
                      ++|.+.+..+..+..+.  .|  ++|.+.+..+.       .+..+++|+.|+++  +|.+++..+. +. .+++|++|+
T Consensus       182 ~~N~l~~~~~~~~~~l~L~~L~Ls~N~l~~~~~~-------~~~~l~~L~~L~L~--~N~l~~~~~~-~~-~l~~L~~L~  250 (313)
T 1ogq_A          182 SRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASV-------LFGSDKNTQKIHLA--KNSLAFDLGK-VG-LSKNLNGLD  250 (313)
T ss_dssp             CSSEEEEECCGGGGGCCCSEEECCSSEEEECCGG-------GCCTTSCCSEEECC--SSEECCBGGG-CC-CCTTCCEEE
T ss_pred             cCCeeeccCChHHhCCcccEEECcCCcccCcCCH-------HHhcCCCCCEEECC--CCceeeecCc-cc-ccCCCCEEE
Confidence            99998876666665544  33  88888887777       88999999999999  9999866655 56 789999999


Q ss_pred             ccCCccCcccccchhhhhcCCCCCceEEecCCcCCCCccccccCCCCCccCC
Q 038163          156 LSYYTLGINSSETLNQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILD  207 (207)
Q Consensus       156 l~~n~~~~~~~i~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~  207 (207)
                      +++|.++  +.+ |. .+..+++|+.|++++|++.+.+|.. ..+++|+.++
T Consensus       251 Ls~N~l~--~~~-p~-~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~  297 (313)
T 1ogq_A          251 LRNNRIY--GTL-PQ-GLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSA  297 (313)
T ss_dssp             CCSSCCE--ECC-CG-GGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGG
T ss_pred             CcCCccc--CcC-Ch-HHhcCcCCCEEECcCCcccccCCCC-ccccccChHH
Confidence            9999998  788 87 8999999999999999999888875 6777777653

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.89  E-value=5.3e-23  Score=160.82  Aligned_cols=187  Identities=19%  Similarity=0.180  Sum_probs=144.7

Q ss_pred             CCCCccCceecCccccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCc-CCcccccchhcccCCCCccEEEc
Q 038163            1 MSFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNN-FTETVTITTQELHNFTNMEYLKL   79 (207)
Q Consensus         1 l~~n~~~~~~p~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~l~~l~~L~~L~l   79 (207)
                      |++|.+.+ +|+..|..+++|++|++++|.+  ....+..+..+++|++|++++|. +....|   ..+..+++|++|++
T Consensus        39 l~~n~i~~-~~~~~~~~~~~L~~L~l~~n~l--~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~---~~~~~l~~L~~L~l  112 (285)
T 1ozn_A           39 LHGNRISH-VPAASFRACRNLTILWLHSNVL--ARIDAAAFTGLALLEQLDLSDNAQLRSVDP---ATFHGLGRLHTLHL  112 (285)
T ss_dssp             CTTSCCCE-ECTTTTTTCTTCCEEECCSSCC--CEECTTTTTTCTTCCEEECCSCTTCCCCCT---TTTTTCTTCCEEEC
T ss_pred             eeCCcCCc-cCHHHcccCCCCCEEECCCCcc--ceeCHhhcCCccCCCEEeCCCCCCccccCH---HHhcCCcCCCEEEC
Confidence            46777774 6667788899999999999988  45557788888999999999886 776656   67788888999999


Q ss_pred             CCCCCChHHHHhhcccccc-----cCCcccceeccccccccCCCCCCCccceecccccccccCchhHHHHHhcCCCccEE
Q 038163           80 DDSPLHISLLQSIASIFPL-----LKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYL  154 (207)
Q Consensus        80 ~~~~~~~~~~~~l~~l~~L-----~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L  154 (207)
                      ++|.+....+..+..+++|     ++|.+.+..+.       .+..+++|+.|+++  +|.++...+..+. .+++|+.|
T Consensus       113 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-------~~~~l~~L~~L~l~--~n~l~~~~~~~~~-~l~~L~~L  182 (285)
T 1ozn_A          113 DRCGLQELGPGLFRGLAALQYLYLQDNALQALPDD-------TFRDLGNLTHLFLH--GNRISSVPERAFR-GLHSLDRL  182 (285)
T ss_dssp             TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT-------TTTTCTTCCEEECC--SSCCCEECTTTTT-TCTTCCEE
T ss_pred             CCCcCCEECHhHhhCCcCCCEEECCCCcccccCHh-------HhccCCCccEEECC--CCcccccCHHHhc-CccccCEE
Confidence            9988875545555555555     77777764444       67888899999999  8888755555566 78889999


Q ss_pred             EccCCccCcccccchhhhhcCCCCCceEEecCCcCCCCccccccCCCCCccCC
Q 038163          155 SLSYYTLGINSSETLNQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILD  207 (207)
Q Consensus       155 ~l~~n~~~~~~~i~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~  207 (207)
                      ++++|.++  +.. +. .+..+++|+.|++++|.+.+..+..+..+++|+.|+
T Consensus       183 ~l~~n~l~--~~~-~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  231 (285)
T 1ozn_A          183 LLHQNRVA--HVH-PH-AFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLR  231 (285)
T ss_dssp             ECCSSCCC--EEC-TT-TTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEE
T ss_pred             ECCCCccc--ccC-Hh-HccCcccccEeeCCCCcCCcCCHHHcccCcccCEEe
Confidence            99999888  444 55 788888999999999998876667788888887653

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.89  E-value=5.6e-24  Score=169.82  Aligned_cols=169  Identities=21%  Similarity=0.209  Sum_probs=99.0

Q ss_pred             cCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhccc---------CCCCccEEEcCCCCCCh
Q 038163           16 NGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELH---------NFTNMEYLKLDDSPLHI   86 (207)
Q Consensus        16 ~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~---------~l~~L~~L~l~~~~~~~   86 (207)
                      ..+++|++|++++|.+   ..+|..+..+++|++|++++|++.+..|   ..+.         .+++|++|++++|.++ 
T Consensus       124 ~~l~~L~~L~Ls~n~l---~~lp~~l~~l~~L~~L~L~~n~~~~~~p---~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-  196 (328)
T 4fcg_A          124 QQFAGLETLTLARNPL---RALPASIASLNRLRELSIRACPELTELP---EPLASTDASGEHQGLVNLQSLRLEWTGIR-  196 (328)
T ss_dssp             GGGTTCSEEEEESCCC---CCCCGGGGGCTTCCEEEEEEETTCCCCC---SCSEEEC-CCCEEESTTCCEEEEEEECCC-
T ss_pred             hccCCCCEEECCCCcc---ccCcHHHhcCcCCCEEECCCCCCccccC---hhHhhccchhhhccCCCCCEEECcCCCcC-
Confidence            4444444444444444   1344444444444444444444444444   2222         2455555555555544 


Q ss_pred             HHHHhhcccccc-----cCCcccceeccccccccCCCCCCCccceecccccccccCchhHHHHHhcCCCccEEEccCCcc
Q 038163           87 SLLQSIASIFPL-----LKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSLSYYTL  161 (207)
Q Consensus        87 ~~~~~l~~l~~L-----~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L~l~~n~~  161 (207)
                      ..+..+..+++|     ++|.+.+ +|.       .+..+++|++|+++  +|.+.+..|..+. .+++|+.|++++|.+
T Consensus       197 ~lp~~l~~l~~L~~L~L~~N~l~~-l~~-------~l~~l~~L~~L~Ls--~n~~~~~~p~~~~-~l~~L~~L~L~~n~~  265 (328)
T 4fcg_A          197 SLPASIANLQNLKSLKIRNSPLSA-LGP-------AIHHLPKLEELDLR--GCTALRNYPPIFG-GRAPLKRLILKDCSN  265 (328)
T ss_dssp             CCCGGGGGCTTCCEEEEESSCCCC-CCG-------GGGGCTTCCEEECT--TCTTCCBCCCCTT-CCCCCCEEECTTCTT
T ss_pred             cchHhhcCCCCCCEEEccCCCCCc-Cch-------hhccCCCCCEEECc--CCcchhhhHHHhc-CCCCCCEEECCCCCc
Confidence            334444444433     5555553 343       56667777777777  7766666666666 677777777777776


Q ss_pred             CcccccchhhhhcCCCCCceEEecCCcCCCCccccccCCCCCccC
Q 038163          162 GINSSETLNQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRIL  206 (207)
Q Consensus       162 ~~~~~i~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l  206 (207)
                      .  +.+ |. .+..+++|+.|++++|.+.+.+|..+..+++++.+
T Consensus       266 ~--~~~-p~-~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l  306 (328)
T 4fcg_A          266 L--LTL-PL-DIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCII  306 (328)
T ss_dssp             C--CBC-CT-TGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEE
T ss_pred             h--hhc-ch-hhhcCCCCCEEeCCCCCchhhccHHHhhccCceEE
Confidence            6  566 66 67777788888888877777777777777777654

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.88  E-value=1.3e-23  Score=167.67  Aligned_cols=182  Identities=18%  Similarity=0.201  Sum_probs=154.3

Q ss_pred             CCCCccCceecCccccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcC
Q 038163            1 MSFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLD   80 (207)
Q Consensus         1 l~~n~~~~~~p~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~   80 (207)
                      |++|.+. .+|+. +..+++|++|++++|.+  . .+|..+..+++|++|++++|.++ .+|   ..+..+++|++|+++
T Consensus        88 L~~n~l~-~lp~~-l~~l~~L~~L~L~~n~l--~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp---~~l~~l~~L~~L~L~  158 (328)
T 4fcg_A           88 LRSVPLP-QFPDQ-AFRLSHLQHMTIDAAGL--M-ELPDTMQQFAGLETLTLARNPLR-ALP---ASIASLNRLRELSIR  158 (328)
T ss_dssp             EESSCCS-SCCSC-GGGGTTCSEEEEESSCC--C-CCCSCGGGGTTCSEEEEESCCCC-CCC---GGGGGCTTCCEEEEE
T ss_pred             ccCCCch-hcChh-hhhCCCCCEEECCCCCc--c-chhHHHhccCCCCEEECCCCccc-cCc---HHHhcCcCCCEEECC
Confidence            3567777 68866 57799999999999999  4 78989999999999999999999 567   688999999999999


Q ss_pred             CCCCChHHHHhhcc---------cccc-----cCCcccceeccccccccCCCCCCCccceecccccccccCchhHHHHHh
Q 038163           81 DSPLHISLLQSIAS---------IFPL-----LKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFLQIISE  146 (207)
Q Consensus        81 ~~~~~~~~~~~l~~---------l~~L-----~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~~~~~l~~  146 (207)
                      +|...+..+..+..         +++|     ++|.++ .+|.       .+..+++|++|+++  +|.+++ ++..+. 
T Consensus       159 ~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~-------~l~~l~~L~~L~L~--~N~l~~-l~~~l~-  226 (328)
T 4fcg_A          159 ACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPA-------SIANLQNLKSLKIR--NSPLSA-LGPAIH-  226 (328)
T ss_dssp             EETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCG-------GGGGCTTCCEEEEE--SSCCCC-CCGGGG-
T ss_pred             CCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchH-------hhcCCCCCCEEEcc--CCCCCc-Cchhhc-
Confidence            98777666655432         4444     777777 5677       78899999999999  999984 555677 


Q ss_pred             cCCCccEEEccCCccCcccccchhhhhcCCCCCceEEecCCcCCCCccccccCCCCCccCC
Q 038163          147 SMSSLKYLSLSYYTLGINSSETLNQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILD  207 (207)
Q Consensus       147 ~~~~L~~L~l~~n~~~~~~~i~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~  207 (207)
                      .+++|+.|++++|.+.  +.+ |. .+..+++|+.|++++|.+.+.+|..+..+++|+.||
T Consensus       227 ~l~~L~~L~Ls~n~~~--~~~-p~-~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~  283 (328)
T 4fcg_A          227 HLPKLEELDLRGCTAL--RNY-PP-IFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLD  283 (328)
T ss_dssp             GCTTCCEEECTTCTTC--CBC-CC-CTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEE
T ss_pred             cCCCCCEEECcCCcch--hhh-HH-HhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEe
Confidence            8999999999999988  777 77 899999999999999999999999999999998764

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.86  E-value=1.2e-21  Score=162.14  Aligned_cols=79  Identities=25%  Similarity=0.323  Sum_probs=40.1

Q ss_pred             CCCccCceecCccccCCCCCcEEecCCCcccCCCcc-hhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcC
Q 038163            2 SFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKL-LQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLD   80 (207)
Q Consensus         2 ~~n~~~~~~p~~~~~~l~~L~~L~ls~n~i~~~~~~-~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~   80 (207)
                      ++|.+.+ +++..|.++++|++|++++|.+  ...+ +..|..+++|++|++++|.+++..|   ..+..+++|++|+++
T Consensus        38 s~n~i~~-~~~~~~~~l~~L~~L~L~~n~~--~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~---~~~~~l~~L~~L~L~  111 (455)
T 3v47_A           38 SLNSIAE-LNETSFSRLQDLQFLKVEQQTP--GLVIRNNTFRGLSSLIILKLDYNQFLQLET---GAFNGLANLEVLTLT  111 (455)
T ss_dssp             CSSCCCE-ECTTTTSSCTTCCEEECCCCST--TCEECTTTTTTCTTCCEEECTTCTTCEECT---TTTTTCTTCCEEECT
T ss_pred             cCCccCc-CChhHhccCccccEEECcCCcc--cceECcccccccccCCEEeCCCCccCccCh---hhccCcccCCEEeCC
Confidence            4555553 2233455555555555555555  2233 3345555555555555555555444   445555555555555


Q ss_pred             CCCCCh
Q 038163           81 DSPLHI   86 (207)
Q Consensus        81 ~~~~~~   86 (207)
                      +|.+.+
T Consensus       112 ~n~l~~  117 (455)
T 3v47_A          112 QCNLDG  117 (455)
T ss_dssp             TSCCBT
T ss_pred             CCCCCc
Confidence            555543

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.86  E-value=1.6e-21  Score=151.70  Aligned_cols=186  Identities=20%  Similarity=0.235  Sum_probs=132.7

Q ss_pred             CCCCccCceecCccccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcC
Q 038163            1 MSFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLD   80 (207)
Q Consensus         1 l~~n~~~~~~p~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~   80 (207)
                      |++|.+.+ +++..|.++++|++|++++|.+  ....+..+..+++|++|++++|.++...+   ..+..+++|++|+++
T Consensus        35 ls~n~l~~-~~~~~~~~l~~L~~L~l~~n~l--~~~~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~l~  108 (276)
T 2z62_A           35 LSFNPLRH-LGSYSFFSFPELQVLDLSRCEI--QTIEDGAYQSLSHLSTLILTGNPIQSLAL---GAFSGLSSLQKLVAV  108 (276)
T ss_dssp             CTTCCCCE-ECTTTTTTCTTCSEEECTTCCC--CEECTTTTTTCTTCCEEECTTCCCCEECT---TTTTTCTTCCEEECT
T ss_pred             CCCCcccc-cCHhHhccccCCcEEECCCCcC--CccCHHHccCCcCCCEEECCCCccCccCh---hhhcCCccccEEECC
Confidence            46777774 5556678888999999999888  44445578888899999999998887776   677888889999998


Q ss_pred             CCCCChHHHHhhcccccc-----cCCcccce-eccccccccCCCCCCCccceecccccccccCchhHHHHHhcCCCcc--
Q 038163           81 DSPLHISLLQSIASIFPL-----LKNLSMIG-CEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLK--  152 (207)
Q Consensus        81 ~~~~~~~~~~~l~~l~~L-----~~n~~~~~-~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~--  152 (207)
                      +|.+.......+..+++|     ++|.+.+. +|.       .+..+++|++|+++  +|.+++..+..+. .++.++  
T Consensus       109 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~-------~~~~l~~L~~L~Ls--~N~l~~~~~~~~~-~l~~L~~l  178 (276)
T 2z62_A          109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPE-------YFSNLTNLEHLDLS--SNKIQSIYCTDLR-VLHQMPLL  178 (276)
T ss_dssp             TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCG-------GGGGCTTCCEEECC--SSCCCEECGGGGH-HHHTCTTC
T ss_pred             CCCccccCchhcccCCCCCEEECcCCccceecCch-------hhccCCCCCEEECC--CCCCCcCCHHHhh-hhhhcccc
Confidence            888775433345444444     77777653 465       77888889999999  8888765443333 333333  


Q ss_pred             --EEEccCCccCcccccchhhhhcCCCCCceEEecCCcCCCCccccccCCCCCccCC
Q 038163          153 --YLSLSYYTLGINSSETLNQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILD  207 (207)
Q Consensus       153 --~L~l~~n~~~~~~~i~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~  207 (207)
                        .+++++|.+.   .+ +. ......+|+.|++++|++.+..+..+..+++|+.|+
T Consensus       179 ~l~L~ls~n~l~---~~-~~-~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  230 (276)
T 2z62_A          179 NLSLDLSLNPMN---FI-QP-GAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIW  230 (276)
T ss_dssp             CEEEECCSSCCC---EE-CT-TSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEE
T ss_pred             ceeeecCCCccc---cc-Cc-cccCCCcccEEECCCCceeecCHhHhcccccccEEE
Confidence              7788888877   55 44 333445788888888888866556677777777653

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.86  E-value=5e-21  Score=148.60  Aligned_cols=182  Identities=19%  Similarity=0.192  Sum_probs=117.5

Q ss_pred             CCCccCceecCccccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcCC
Q 038163            2 SFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDD   81 (207)
Q Consensus         2 ~~n~~~~~~p~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~~   81 (207)
                      +++.+. .+|..+   .+++++|++++|.+  ....+..|..+++|++|++++|.++...+   ..+..+++|++|++++
T Consensus        24 ~~~~l~-~ip~~~---~~~l~~L~l~~n~l--~~~~~~~~~~l~~L~~L~l~~n~l~~i~~---~~~~~l~~L~~L~l~~   94 (270)
T 2o6q_A           24 SSKKLT-AIPSNI---PADTKKLDLQSNKL--SSLPSKAFHRLTKLRLLYLNDNKLQTLPA---GIFKELKNLETLWVTD   94 (270)
T ss_dssp             TTSCCS-SCCSCC---CTTCSEEECCSSCC--SCCCTTSSSSCTTCCEEECCSSCCSCCCT---TTTSSCTTCCEEECCS
T ss_pred             cCCCCC-ccCCCC---CCCCCEEECcCCCC--CeeCHHHhcCCCCCCEEECCCCccCeeCh---hhhcCCCCCCEEECCC
Confidence            455555 356442   25677777777777  33334467777777777777777776544   4456677777777777


Q ss_pred             CCCChHHHHhhcccccc-----cCCcccceeccccccccCCCCCCCccceecccccccccCchhHHHHHhcCCCccEEEc
Q 038163           82 SPLHISLLQSIASIFPL-----LKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSL  156 (207)
Q Consensus        82 ~~~~~~~~~~l~~l~~L-----~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L~l  156 (207)
                      |.+....+..+..+++|     .+|.+++..+.       .+..+++|++|+++  +|.++...+..+. .+++|+.|++
T Consensus        95 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-------~~~~l~~L~~L~Ls--~n~l~~~~~~~~~-~l~~L~~L~L  164 (270)
T 2o6q_A           95 NKLQALPIGVFDQLVNLAELRLDRNQLKSLPPR-------VFDSLTKLTYLSLG--YNELQSLPKGVFD-KLTSLKELRL  164 (270)
T ss_dssp             SCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTT-------TTTTCTTCCEEECC--SSCCCCCCTTTTT-TCTTCCEEEC
T ss_pred             CcCCcCCHhHcccccCCCEEECCCCccCeeCHH-------HhCcCcCCCEEECC--CCcCCccCHhHcc-CCcccceeEe
Confidence            77664333333333333     66666654444       56777777777777  7777654444455 6777777777


Q ss_pred             cCCccCcccccchhhhhcCCCCCceEEecCCcCCCCccccccCCCCCccC
Q 038163          157 SYYTLGINSSETLNQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRIL  206 (207)
Q Consensus       157 ~~n~~~~~~~i~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l  206 (207)
                      ++|.+.   .+ +...+..+++|+.|++++|++.+..+..+..+++|+.|
T Consensus       165 ~~n~l~---~~-~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L  210 (270)
T 2o6q_A          165 YNNQLK---RV-PEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKML  210 (270)
T ss_dssp             CSSCCS---CC-CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred             cCCcCc---Ee-ChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEE
Confidence            777776   45 43256777777777777777776555566677777654

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.86  E-value=6.6e-22  Score=155.99  Aligned_cols=192  Identities=21%  Similarity=0.147  Sum_probs=123.0

Q ss_pred             CCCCccCceecCccccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCccccc-----------------
Q 038163            1 MSFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTI-----------------   63 (207)
Q Consensus         1 l~~n~~~~~~p~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~-----------------   63 (207)
                      |++|.+. .+|+.+|.++++|++|++++|.+......+..+..+++|++|++++|.+....+.                 
T Consensus        35 L~~n~l~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l  113 (306)
T 2z66_A           35 LESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNL  113 (306)
T ss_dssp             CCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEE
T ss_pred             CCCCccC-ccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCCEEECCCCcc
Confidence            4677777 5777778888888888888888832222345555666677777766665532110                 


Q ss_pred             ----chhcccCCCCccEEEcCCCCCChHHHHhhcccccc-----cCCcccc-eeccccccccCCCCCCCccceecccccc
Q 038163           64 ----TTQELHNFTNMEYLKLDDSPLHISLLQSIASIFPL-----LKNLSMI-GCEVNGVIRGQDFPHSKSLEHLDMEFMR  133 (207)
Q Consensus        64 ----~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L-----~~n~~~~-~~~~~~~~~~~~~~~~~~L~~L~l~~~~  133 (207)
                          ....+..+++|++|++++|.+....+..+..+++|     ++|.+.+ ..|.       .+..+++|++|+++  +
T Consensus       114 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-------~~~~l~~L~~L~Ls--~  184 (306)
T 2z66_A          114 KQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD-------IFTELRNLTFLDLS--Q  184 (306)
T ss_dssp             ESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECS-------CCTTCTTCCEEECT--T
T ss_pred             cccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchh-------HHhhCcCCCEEECC--C
Confidence                00123344455555555554443333333333333     5555554 3444       67777888888888  8


Q ss_pred             cccCchhHHHHHhcCCCccEEEccCCccCcccccchhhhhcCCCCCceEEecCCcCCCCccccccCCC-CCccCC
Q 038163          134 IALNTSFLQIISESMSSLKYLSLSYYTLGINSSETLNQGLCSLVHLQELYIASNDLRGSLPWCMANMT-SLRILD  207 (207)
Q Consensus       134 n~~~~~~~~~l~~~~~~L~~L~l~~n~~~~~~~i~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~-~L~~l~  207 (207)
                      |.+++..+..+. .+++|+.|++++|.++   .+ +...+..+++|+.|++++|++.+..|..+..++ +|+.||
T Consensus       185 n~l~~~~~~~~~-~l~~L~~L~L~~N~l~---~~-~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~  254 (306)
T 2z66_A          185 CQLEQLSPTAFN-SLSSLQVLNMSHNNFF---SL-DTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLN  254 (306)
T ss_dssp             SCCCEECTTTTT-TCTTCCEEECTTSCCS---BC-CSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEE
T ss_pred             CCcCCcCHHHhc-CCCCCCEEECCCCccC---cc-ChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEE
Confidence            888766666676 7788888888888887   44 332677788888888888888877777777774 777653

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.85  E-value=3.9e-21  Score=150.15  Aligned_cols=182  Identities=17%  Similarity=0.101  Sum_probs=150.4

Q ss_pred             CCccCceecCccccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcCCC
Q 038163            3 FNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDDS   82 (207)
Q Consensus         3 ~n~~~~~~p~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~~~   82 (207)
                      ++.+. .+|..   -.+++++|++++|.+  ....+..+..+++|++|++++|.+++..|   ..+..+++|++|++++|
T Consensus        20 ~~~l~-~ip~~---~~~~l~~L~l~~n~i--~~~~~~~~~~~~~L~~L~l~~n~l~~~~~---~~~~~l~~L~~L~l~~n   90 (285)
T 1ozn_A           20 QQGLQ-AVPVG---IPAASQRIFLHGNRI--SHVPAASFRACRNLTILWLHSNVLARIDA---AAFTGLALLEQLDLSDN   90 (285)
T ss_dssp             SSCCS-SCCTT---CCTTCSEEECTTSCC--CEECTTTTTTCTTCCEEECCSSCCCEECT---TTTTTCTTCCEEECCSC
T ss_pred             cCCcc-cCCcC---CCCCceEEEeeCCcC--CccCHHHcccCCCCCEEECCCCccceeCH---hhcCCccCCCEEeCCCC
Confidence            45555 46643   357899999999999  45455678999999999999999998877   78899999999999999


Q ss_pred             C-CChHHHHhhcccccc-----cCCcccceeccccccccCCCCCCCccceecccccccccCchhHHHHHhcCCCccEEEc
Q 038163           83 P-LHISLLQSIASIFPL-----LKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSL  156 (207)
Q Consensus        83 ~-~~~~~~~~l~~l~~L-----~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L~l  156 (207)
                      . +....+..+..+++|     .+|.+.+..+.       .+..+++|++|+++  +|.++...+..+. .+++|+.|++
T Consensus        91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-------~~~~l~~L~~L~l~--~n~l~~~~~~~~~-~l~~L~~L~l  160 (285)
T 1ozn_A           91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPG-------LFRGLAALQYLYLQ--DNALQALPDDTFR-DLGNLTHLFL  160 (285)
T ss_dssp             TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTT-------TTTTCTTCCEEECC--SSCCCCCCTTTTT-TCTTCCEEEC
T ss_pred             CCccccCHHHhcCCcCCCEEECCCCcCCEECHh-------HhhCCcCCCEEECC--CCcccccCHhHhc-cCCCccEEEC
Confidence            7 664445556555555     78888876666       78899999999999  9999866566677 8999999999


Q ss_pred             cCCccCcccccchhhhhcCCCCCceEEecCCcCCCCccccccCCCCCccCC
Q 038163          157 SYYTLGINSSETLNQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILD  207 (207)
Q Consensus       157 ~~n~~~~~~~i~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~  207 (207)
                      ++|.++   .+ +...+..+++|+.|++++|.+.+..|..+..+++|+.||
T Consensus       161 ~~n~l~---~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  207 (285)
T 1ozn_A          161 HGNRIS---SV-PERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLY  207 (285)
T ss_dssp             CSSCCC---EE-CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred             CCCccc---cc-CHHHhcCccccCEEECCCCcccccCHhHccCcccccEee
Confidence            999998   66 543688999999999999999988889999999998764

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.85  E-value=4e-21  Score=159.08  Aligned_cols=82  Identities=24%  Similarity=0.252  Sum_probs=40.1

Q ss_pred             CCCCCccceecccccccccCchhHHHHHhcCCCccEEEccCCccCcccccchhhhhcCCCCCceEEecCCcCCCCccccc
Q 038163          118 FPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSLSYYTLGINSSETLNQGLCSLVHLQELYIASNDLRGSLPWCM  197 (207)
Q Consensus       118 ~~~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L~l~~n~~~~~~~i~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~  197 (207)
                      +..+++|+.|+++  +|.+++..+..+. .+++|+.|++++|.++  +.. +. .+..+++|+.|++++|++.+..|..+
T Consensus       295 ~~~l~~L~~L~Ls--~n~l~~~~~~~~~-~l~~L~~L~Ls~N~l~--~~~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~  367 (455)
T 3v47_A          295 FSHFTDLEQLTLA--QNEINKIDDNAFW-GLTHLLKLNLSQNFLG--SID-SR-MFENLDKLEVLDLSYNHIRALGDQSF  367 (455)
T ss_dssp             TTTCTTCCEEECT--TSCCCEECTTTTT-TCTTCCEEECCSSCCC--EEC-GG-GGTTCTTCCEEECCSSCCCEECTTTT
T ss_pred             cccCCCCCEEECC--CCcccccChhHhc-CcccCCEEECCCCccC--CcC-hh-HhcCcccCCEEECCCCcccccChhhc
Confidence            4445555555555  5555544444444 4555555555555554  222 22 44445555555555555544444444


Q ss_pred             cCCCCCccC
Q 038163          198 ANMTSLRIL  206 (207)
Q Consensus       198 ~~l~~L~~l  206 (207)
                      ..+++|++|
T Consensus       368 ~~l~~L~~L  376 (455)
T 3v47_A          368 LGLPNLKEL  376 (455)
T ss_dssp             TTCTTCCEE
T ss_pred             cccccccEE
Confidence            444444443

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.85  E-value=9.6e-21  Score=157.07  Aligned_cols=194  Identities=19%  Similarity=0.156  Sum_probs=134.6

Q ss_pred             CCCCccCceecCccccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcC
Q 038163            1 MSFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLD   80 (207)
Q Consensus         1 l~~n~~~~~~p~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~   80 (207)
                      |++|.+.+ +++..|.++++|++|++++|.+  ....+..|..+++|++|++++|.++...+   ..+..+++|++|+++
T Consensus        82 L~~n~i~~-~~~~~~~~l~~L~~L~Ls~n~i--~~~~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~L~  155 (452)
T 3zyi_A           82 LMENNIQM-IQADTFRHLHHLEVLQLGRNSI--RQIEVGAFNGLASLNTLELFDNWLTVIPS---GAFEYLSKLRELWLR  155 (452)
T ss_dssp             CCSSCCCE-ECTTTTTTCTTCCEEECCSSCC--CEECTTTTTTCTTCCEEECCSSCCSBCCT---TTSSSCTTCCEEECC
T ss_pred             CcCCcCce-ECHHHcCCCCCCCEEECCCCcc--CCcChhhccCcccCCEEECCCCcCCccCh---hhhcccCCCCEEECC
Confidence            56788885 5556688899999999999988  45556788888899999999998887666   567788888888888


Q ss_pred             CCCCChHHHHhhcccccc-----cCCcccceecccc----------------ccccCCCCCCCccceecccccccccCch
Q 038163           81 DSPLHISLLQSIASIFPL-----LKNLSMIGCEVNG----------------VIRGQDFPHSKSLEHLDMEFMRIALNTS  139 (207)
Q Consensus        81 ~~~~~~~~~~~l~~l~~L-----~~n~~~~~~~~~~----------------~~~~~~~~~~~~L~~L~l~~~~n~~~~~  139 (207)
                      +|.+.......+..+++|     .+|...+.++...                ...+..+..+++|+.|+++  +|.+++.
T Consensus       156 ~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls--~N~l~~~  233 (452)
T 3zyi_A          156 NNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMS--GNHFPEI  233 (452)
T ss_dssp             SCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCCCTTCTTCCEEECT--TSCCSEE
T ss_pred             CCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccccccccccccEEECc--CCcCccc
Confidence            888764333333333333     2222111122110                0001145566777888888  8877766


Q ss_pred             hHHHHHhcCCCccEEEccCCccCcccccchhhhhcCCCCCceEEecCCcCCCCccccccCCCCCccCC
Q 038163          140 FLQIISESMSSLKYLSLSYYTLGINSSETLNQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILD  207 (207)
Q Consensus       140 ~~~~l~~~~~~L~~L~l~~n~~~~~~~i~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~  207 (207)
                      .+..+. .+++|+.|++++|.+.  +.. +. .+..+++|+.|++++|++.+..+..+..+++|+.|+
T Consensus       234 ~~~~~~-~l~~L~~L~L~~n~l~--~~~-~~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  296 (452)
T 3zyi_A          234 RPGSFH-GLSSLKKLWVMNSQVS--LIE-RN-AFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELH  296 (452)
T ss_dssp             CGGGGT-TCTTCCEEECTTSCCC--EEC-TT-TTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEE
T ss_pred             Cccccc-CccCCCEEEeCCCcCc--eEC-HH-HhcCCCCCCEEECCCCcCCccChHHhccccCCCEEE
Confidence            677777 7888888888888887  333 44 778888888888888888876667777788887653

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.85  E-value=7e-21  Score=157.42  Aligned_cols=194  Identities=17%  Similarity=0.150  Sum_probs=132.1

Q ss_pred             CCCCccCceecCccccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcC
Q 038163            1 MSFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLD   80 (207)
Q Consensus         1 l~~n~~~~~~p~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~   80 (207)
                      |++|.+.+ +++..|.++++|++|++++|.+  ....+..|..+++|++|++++|.++...+   ..+..+++|++|+++
T Consensus        71 L~~n~i~~-~~~~~~~~l~~L~~L~Ls~n~i--~~i~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~L~  144 (440)
T 3zyj_A           71 LHENQIQI-IKVNSFKHLRHLEILQLSRNHI--RTIEIGAFNGLANLNTLELFDNRLTTIPN---GAFVYLSKLKELWLR  144 (440)
T ss_dssp             CCSCCCCE-ECTTTTSSCSSCCEEECCSSCC--CEECGGGGTTCSSCCEEECCSSCCSSCCT---TTSCSCSSCCEEECC
T ss_pred             ccCCcCCe-eCHHHhhCCCCCCEEECCCCcC--CccChhhccCCccCCEEECCCCcCCeeCH---hHhhccccCceeeCC
Confidence            46777774 5556788899999999999988  45555778888899999999988887665   567788888888888


Q ss_pred             CCCCChHHHHhhcccccc-----cCCcccceecccc----------------ccccCCCCCCCccceecccccccccCch
Q 038163           81 DSPLHISLLQSIASIFPL-----LKNLSMIGCEVNG----------------VIRGQDFPHSKSLEHLDMEFMRIALNTS  139 (207)
Q Consensus        81 ~~~~~~~~~~~l~~l~~L-----~~n~~~~~~~~~~----------------~~~~~~~~~~~~L~~L~l~~~~n~~~~~  139 (207)
                      +|.+.......+..+++|     .+|...+.++...                ...+..+..+++|+.|+++  +|.+++.
T Consensus       145 ~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls--~N~l~~~  222 (440)
T 3zyj_A          145 NNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLS--GNHLSAI  222 (440)
T ss_dssp             SCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCCCTTCSSCCEEECT--TSCCCEE
T ss_pred             CCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccccCCCcccCEEECC--CCccCcc
Confidence            888764333334333333     3322222222110                0001145566677777777  7777765


Q ss_pred             hHHHHHhcCCCccEEEccCCccCcccccchhhhhcCCCCCceEEecCCcCCCCccccccCCCCCccCC
Q 038163          140 FLQIISESMSSLKYLSLSYYTLGINSSETLNQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILD  207 (207)
Q Consensus       140 ~~~~l~~~~~~L~~L~l~~n~~~~~~~i~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~  207 (207)
                      .+..+. .+++|+.|++++|.+.   .+.+. .+..+++|+.|++++|++.+..+..+..+++|+.|+
T Consensus       223 ~~~~~~-~l~~L~~L~L~~n~l~---~~~~~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  285 (440)
T 3zyj_A          223 RPGSFQ-GLMHLQKLWMIQSQIQ---VIERN-AFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIH  285 (440)
T ss_dssp             CTTTTT-TCTTCCEEECTTCCCC---EECTT-SSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEE
T ss_pred             Chhhhc-cCccCCEEECCCCcee---EEChh-hhcCCCCCCEEECCCCCCCccChhHhccccCCCEEE
Confidence            566666 7778888888888877   44143 677788888888888888876667777778777653

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.84  E-value=1.6e-20  Score=156.46  Aligned_cols=168  Identities=19%  Similarity=0.212  Sum_probs=129.7

Q ss_pred             CCCCccCceecCccccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcC
Q 038163            1 MSFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLD   80 (207)
Q Consensus         1 l~~n~~~~~~p~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~   80 (207)
                      |++|.+.+ +++..|.++++|++|++++|.+  ....|..|.++++|++|++++|.++...+   ..+..+++|++|+++
T Consensus        39 L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~i--~~~~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~Ls  112 (477)
T 2id5_A           39 LGKNRIKT-LNQDEFASFPHLEELELNENIV--SAVEPGAFNNLFNLRTLGLRSNRLKLIPL---GVFTGLSNLTKLDIS  112 (477)
T ss_dssp             CCSSCCCE-ECTTTTTTCTTCCEEECTTSCC--CEECTTTTTTCTTCCEEECCSSCCCSCCT---TSSTTCTTCCEEECT
T ss_pred             CCCCccce-ECHhHccCCCCCCEEECCCCcc--CEeChhhhhCCccCCEEECCCCcCCccCc---ccccCCCCCCEEECC
Confidence            56788885 5556789999999999999999  55568889999999999999999987665   567889999999999


Q ss_pred             CCCCChHHHHhhcccccc-----cCCcccceeccccccccCCCCCCCccceecccccccccCchhHHHHHhcCCCccEEE
Q 038163           81 DSPLHISLLQSIASIFPL-----LKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLS  155 (207)
Q Consensus        81 ~~~~~~~~~~~l~~l~~L-----~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L~  155 (207)
                      +|.+....+..+..+++|     .+|.+.+..+.       .+..+++|+.|+++  +|.++...+..+. .+++|+.|+
T Consensus       113 ~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-------~~~~l~~L~~L~l~--~n~l~~~~~~~l~-~l~~L~~L~  182 (477)
T 2id5_A          113 ENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHR-------AFSGLNSLEQLTLE--KCNLTSIPTEALS-HLHGLIVLR  182 (477)
T ss_dssp             TSCCCEECTTTTTTCTTCCEEEECCTTCCEECTT-------SSTTCTTCCEEEEE--SCCCSSCCHHHHT-TCTTCCEEE
T ss_pred             CCccccCChhHccccccCCEEECCCCccceeChh-------hccCCCCCCEEECC--CCcCcccChhHhc-ccCCCcEEe
Confidence            999886655556555555     77887776666       78889999999999  9988866667777 888899999


Q ss_pred             ccCCccCcccccchhhhhcCCCCCceEEecCCc
Q 038163          156 LSYYTLGINSSETLNQGLCSLVHLQELYIASND  188 (207)
Q Consensus       156 l~~n~~~~~~~i~~~~~~~~~~~L~~L~l~~n~  188 (207)
                      +++|.+.   .+ +...+..+++|+.|++++|.
T Consensus       183 l~~n~i~---~~-~~~~~~~l~~L~~L~l~~~~  211 (477)
T 2id5_A          183 LRHLNIN---AI-RDYSFKRLYRLKVLEISHWP  211 (477)
T ss_dssp             EESCCCC---EE-CTTCSCSCTTCCEEEEECCT
T ss_pred             CCCCcCc---Ee-ChhhcccCcccceeeCCCCc
Confidence            9888887   33 22255555555555555443

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.84  E-value=3.7e-21  Score=151.66  Aligned_cols=171  Identities=19%  Similarity=0.181  Sum_probs=138.3

Q ss_pred             CCCCccCceecCccccCCCCCcEEecCCCcccCCCcch-hhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEc
Q 038163            1 MSFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLL-QSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKL   79 (207)
Q Consensus         1 l~~n~~~~~~p~~~~~~l~~L~~L~ls~n~i~~~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l   79 (207)
                      |++|.+. .+|+. +..+++|++|++++|.+  ....+ ..+..+++|++|++++|.+.+..+   ..+..+++|++|++
T Consensus        85 Ls~n~i~-~l~~~-~~~l~~L~~L~l~~n~l--~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~---~~~~~l~~L~~L~l  157 (306)
T 2z66_A           85 LSFNGVI-TMSSN-FLGLEQLEHLDFQHSNL--KQMSEFSVFLSLRNLIYLDISHTHTRVAFN---GIFNGLSSLEVLKM  157 (306)
T ss_dssp             CCSCSEE-EEEEE-EETCTTCCEEECTTSEE--ESSTTTTTTTTCTTCCEEECTTSCCEECST---TTTTTCTTCCEEEC
T ss_pred             CCCCccc-cChhh-cCCCCCCCEEECCCCcc--cccccchhhhhccCCCEEECCCCcCCccch---hhcccCcCCCEEEC
Confidence            4566666 46644 68899999999999998  23222 478889999999999999988777   67889999999999


Q ss_pred             CCCCCCh-HHHHhhcccccc-----cCCcccceeccccccccCCCCCCCccceecccccccccCchhHHHHHhcCCCccE
Q 038163           80 DDSPLHI-SLLQSIASIFPL-----LKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKY  153 (207)
Q Consensus        80 ~~~~~~~-~~~~~l~~l~~L-----~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~  153 (207)
                      ++|.+.+ ..+..+..+++|     ++|.+++..+.       .+..+++|+.|+++  +|.+++..+..+. .+++|+.
T Consensus       158 ~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-------~~~~l~~L~~L~L~--~N~l~~~~~~~~~-~l~~L~~  227 (306)
T 2z66_A          158 AGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPT-------AFNSLSSLQVLNMS--HNNFFSLDTFPYK-CLNSLQV  227 (306)
T ss_dssp             TTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTT-------TTTTCTTCCEEECT--TSCCSBCCSGGGT-TCTTCCE
T ss_pred             CCCccccccchhHHhhCcCCCEEECCCCCcCCcCHH-------HhcCCCCCCEEECC--CCccCccChhhcc-CcccCCE
Confidence            9999875 345555555555     88888886676       88899999999999  9999866555677 8999999


Q ss_pred             EEccCCccCcccccchhhhhcCC-CCCceEEecCCcCCCC
Q 038163          154 LSLSYYTLGINSSETLNQGLCSL-VHLQELYIASNDLRGS  192 (207)
Q Consensus       154 L~l~~n~~~~~~~i~~~~~~~~~-~~L~~L~l~~n~l~~~  192 (207)
                      |++++|.+.  +.. +. .+..+ ++|+.|++++|++...
T Consensus       228 L~L~~N~l~--~~~-~~-~~~~~~~~L~~L~L~~N~~~~~  263 (306)
T 2z66_A          228 LDYSLNHIM--TSK-KQ-ELQHFPSSLAFLNLTQNDFACT  263 (306)
T ss_dssp             EECTTSCCC--BCS-SS-SCCCCCTTCCEEECTTCCEECS
T ss_pred             eECCCCCCc--ccC-HH-HHHhhhccCCEEEccCCCeecc
Confidence            999999998  555 55 77887 4999999999999864

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.84  E-value=1.3e-20  Score=155.80  Aligned_cols=169  Identities=18%  Similarity=0.185  Sum_probs=120.0

Q ss_pred             CCCCccCceecCccccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEE--
Q 038163            1 MSFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLK--   78 (207)
Q Consensus         1 l~~n~~~~~~p~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~--   78 (207)
                      |++|.+. .+++..|.++++|++|++++|.+  ....+..|..+++|++|++++|.++...+   ..+..+++|++|+  
T Consensus        95 Ls~n~i~-~i~~~~~~~l~~L~~L~L~~n~l--~~~~~~~~~~l~~L~~L~L~~N~i~~~~~---~~~~~l~~L~~L~l~  168 (440)
T 3zyj_A           95 LSRNHIR-TIEIGAFNGLANLNTLELFDNRL--TTIPNGAFVYLSKLKELWLRNNPIESIPS---YAFNRIPSLRRLDLG  168 (440)
T ss_dssp             CCSSCCC-EECGGGGTTCSSCCEEECCSSCC--SSCCTTTSCSCSSCCEEECCSCCCCEECT---TTTTTCTTCCEEECC
T ss_pred             CCCCcCC-ccChhhccCCccCCEEECCCCcC--CeeCHhHhhccccCceeeCCCCcccccCH---HHhhhCcccCEeCCC
Confidence            4567776 35556677888888888888877  33334467777778888887777765444   3444444445554  


Q ss_pred             -----------------------cCCCCCChHHHHhhcccccc-----cCCcccceeccccccccCCCCCCCccceeccc
Q 038163           79 -----------------------LDDSPLHISLLQSIASIFPL-----LKNLSMIGCEVNGVIRGQDFPHSKSLEHLDME  130 (207)
Q Consensus        79 -----------------------l~~~~~~~~~~~~l~~l~~L-----~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~  130 (207)
                                             +++|.++. . +.+..+++|     ++|.+++..+.       .+..+++|+.|+++
T Consensus       169 ~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~-~~~~~l~~L~~L~Ls~N~l~~~~~~-------~~~~l~~L~~L~L~  239 (440)
T 3zyj_A          169 ELKRLSYISEGAFEGLSNLRYLNLAMCNLRE-I-PNLTPLIKLDELDLSGNHLSAIRPG-------SFQGLMHLQKLWMI  239 (440)
T ss_dssp             CCTTCCEECTTTTTTCSSCCEEECTTSCCSS-C-CCCTTCSSCCEEECTTSCCCEECTT-------TTTTCTTCCEEECT
T ss_pred             CCCCcceeCcchhhcccccCeecCCCCcCcc-c-cccCCCcccCEEECCCCccCccChh-------hhccCccCCEEECC
Confidence                                   44444431 1 122223333     66666665555       88999999999999


Q ss_pred             ccccccCchhHHHHHhcCCCccEEEccCCccCcccccchhhhhcCCCCCceEEecCCcCCC
Q 038163          131 FMRIALNTSFLQIISESMSSLKYLSLSYYTLGINSSETLNQGLCSLVHLQELYIASNDLRG  191 (207)
Q Consensus       131 ~~~n~~~~~~~~~l~~~~~~L~~L~l~~n~~~~~~~i~~~~~~~~~~~L~~L~l~~n~l~~  191 (207)
                        +|.+++..+..+. .+++|+.|++++|.++   .+ +...+..+++|+.|++++|.+.-
T Consensus       240 --~n~l~~~~~~~~~-~l~~L~~L~L~~N~l~---~~-~~~~~~~l~~L~~L~L~~Np~~C  293 (440)
T 3zyj_A          240 --QSQIQVIERNAFD-NLQSLVEINLAHNNLT---LL-PHDLFTPLHHLERIHLHHNPWNC  293 (440)
T ss_dssp             --TCCCCEECTTSST-TCTTCCEEECTTSCCC---CC-CTTTTSSCTTCCEEECCSSCEEC
T ss_pred             --CCceeEEChhhhc-CCCCCCEEECCCCCCC---cc-ChhHhccccCCCEEEcCCCCccC
Confidence              9999977777777 8999999999999998   66 54478899999999999999863

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.84  E-value=1.2e-20  Score=157.24  Aligned_cols=187  Identities=20%  Similarity=0.282  Sum_probs=111.2

Q ss_pred             CCCCccCceecCccccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcC
Q 038163            1 MSFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLD   80 (207)
Q Consensus         1 l~~n~~~~~~p~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~   80 (207)
                      |++|.+.+ +++..|.++++|++|++++|.+  ....+..|..+++|++|++++|.++...+   ..+..+++|++|+++
T Consensus        63 L~~n~i~~-~~~~~~~~l~~L~~L~L~~n~l--~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~---~~~~~l~~L~~L~l~  136 (477)
T 2id5_A           63 LNENIVSA-VEPGAFNNLFNLRTLGLRSNRL--KLIPLGVFTGLSNLTKLDISENKIVILLD---YMFQDLYNLKSLEVG  136 (477)
T ss_dssp             CTTSCCCE-ECTTTTTTCTTCCEEECCSSCC--CSCCTTSSTTCTTCCEEECTTSCCCEECT---TTTTTCTTCCEEEEC
T ss_pred             CCCCccCE-eChhhhhCCccCCEEECCCCcC--CccCcccccCCCCCCEEECCCCccccCCh---hHccccccCCEEECC
Confidence            35566664 3334566666666666666666  22222345566666666666666655544   444555555555555


Q ss_pred             CCCCChHHHHh------------------------hcccccc-----cCCcccceeccccccccCCCCCCC---------
Q 038163           81 DSPLHISLLQS------------------------IASIFPL-----LKNLSMIGCEVNGVIRGQDFPHSK---------  122 (207)
Q Consensus        81 ~~~~~~~~~~~------------------------l~~l~~L-----~~n~~~~~~~~~~~~~~~~~~~~~---------  122 (207)
                      +|.+....+..                        +..+++|     .+|.+.+..+.       .+..++         
T Consensus       137 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~-------~~~~l~~L~~L~l~~  209 (477)
T 2id5_A          137 DNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDY-------SFKRLYRLKVLEISH  209 (477)
T ss_dssp             CTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTT-------CSCSCTTCCEEEEEC
T ss_pred             CCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChh-------hcccCcccceeeCCC
Confidence            55444322222                        2222222     33333332221       233333         


Q ss_pred             ---------------ccceecccccccccCchhHHHHHhcCCCccEEEccCCccCcccccchhhhhcCCCCCceEEecCC
Q 038163          123 ---------------SLEHLDMEFMRIALNTSFLQIISESMSSLKYLSLSYYTLGINSSETLNQGLCSLVHLQELYIASN  187 (207)
Q Consensus       123 ---------------~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L~l~~n~~~~~~~i~~~~~~~~~~~L~~L~l~~n  187 (207)
                                     +|+.|+++  +|.++...+..+. .+++|+.|++++|.+.   .+ +...+..+++|+.|++++|
T Consensus       210 ~~~~~~~~~~~~~~~~L~~L~l~--~n~l~~~~~~~~~-~l~~L~~L~Ls~n~l~---~~-~~~~~~~l~~L~~L~L~~n  282 (477)
T 2id5_A          210 WPYLDTMTPNCLYGLNLTSLSIT--HCNLTAVPYLAVR-HLVYLRFLNLSYNPIS---TI-EGSMLHELLRLQEIQLVGG  282 (477)
T ss_dssp             CTTCCEECTTTTTTCCCSEEEEE--SSCCCSCCHHHHT-TCTTCCEEECCSSCCC---EE-CTTSCTTCTTCCEEECCSS
T ss_pred             CccccccCcccccCccccEEECc--CCcccccCHHHhc-CccccCeeECCCCcCC---cc-ChhhccccccCCEEECCCC
Confidence                           55566666  6666644445666 7888888888888887   55 3336788888999999999


Q ss_pred             cCCCCccccccCCCCCccCC
Q 038163          188 DLRGSLPWCMANMTSLRILD  207 (207)
Q Consensus       188 ~l~~~~p~~~~~l~~L~~l~  207 (207)
                      ++.+..|..+..+++|+.||
T Consensus       283 ~l~~~~~~~~~~l~~L~~L~  302 (477)
T 2id5_A          283 QLAVVEPYAFRGLNYLRVLN  302 (477)
T ss_dssp             CCSEECTTTBTTCTTCCEEE
T ss_pred             ccceECHHHhcCcccCCEEE
Confidence            88877788888888888764

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.83  E-value=1.3e-21  Score=154.96  Aligned_cols=183  Identities=19%  Similarity=0.170  Sum_probs=128.9

Q ss_pred             CCCCccCceecCccc-cCCCCCcEEecCCCcccCCCcchhhhcCC-----CCCCEEEcCCCcCCcccccchhcccCCCCc
Q 038163            1 MSFNEINNLVVPQGY-NGLRKLKSLDLSGVGVRDGSKLLQSIGSF-----SSLNSLYLSSNNFTETVTITTQELHNFTNM   74 (207)
Q Consensus         1 l~~n~~~~~~p~~~~-~~l~~L~~L~ls~n~i~~~~~~~~~~~~l-----~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L   74 (207)
                      |++|.+.+.+|..++ ..+++|++|++++|.+  ... |..+..+     ++|++|++++|.+++..|   ..+..+++|
T Consensus       102 L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l--~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~---~~~~~l~~L  175 (312)
T 1wwl_A          102 LENLEVTGTAPPPLLEATGPDLNILNLRNVSW--ATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSC---EQVRVFPAL  175 (312)
T ss_dssp             EEEEBCBSCCCCCSSSCCSCCCSEEEEESCBC--SSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCT---TTCCCCSSC
T ss_pred             ccCCcccchhHHHHHHhcCCCccEEEccCCCC--cch-hHHHHHHHHhhcCCCcEEEeeCCCCccchH---HHhccCCCC
Confidence            356778877776643 7888888888888888  333 6666665     888888888888888777   678888888


Q ss_pred             cEEEcCCCCCChH--HHHhh--cccccc-----cCCcccc--eeccccccccCCCCCCCccceecccccccccCchhH-H
Q 038163           75 EYLKLDDSPLHIS--LLQSI--ASIFPL-----LKNLSMI--GCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFL-Q  142 (207)
Q Consensus        75 ~~L~l~~~~~~~~--~~~~l--~~l~~L-----~~n~~~~--~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~~~-~  142 (207)
                      ++|++++|.+.+.  .+..+  ..+++|     ++|.+++  ..+..      .+..+++|++|+++  +|.+++..+ .
T Consensus       176 ~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~------~~~~l~~L~~L~Ls--~N~l~~~~~~~  247 (312)
T 1wwl_A          176 STLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSA------LAAARVQLQGLDLS--HNSLRDAAGAP  247 (312)
T ss_dssp             CEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHH------HHHTTCCCSEEECT--TSCCCSSCCCS
T ss_pred             CEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHH------HHhcCCCCCEEECC--CCcCCcccchh
Confidence            8999988887654  23333  444444     6677663  12210      23456788888888  888876543 2


Q ss_pred             HHHhcCCCccEEEccCCccCcccccchhhhhcCCCCCceEEecCCcCCCCccccccCCCCCccCC
Q 038163          143 IISESMSSLKYLSLSYYTLGINSSETLNQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILD  207 (207)
Q Consensus       143 ~l~~~~~~L~~L~l~~n~~~~~~~i~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~  207 (207)
                      .+. .+++|+.|++++|.++   .+ |. .+.  ++|+.|++++|++.+. |. +..+++|+.|+
T Consensus       248 ~~~-~l~~L~~L~Ls~N~l~---~i-p~-~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~  302 (312)
T 1wwl_A          248 SCD-WPSQLNSLNLSFTGLK---QV-PK-GLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLS  302 (312)
T ss_dssp             CCC-CCTTCCEEECTTSCCS---SC-CS-SCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEE
T ss_pred             hhh-hcCCCCEEECCCCccC---hh-hh-hcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEe
Confidence            333 4678888888888887   77 66 444  7888888888888765 55 77778777653

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.83  E-value=3.9e-22  Score=172.02  Aligned_cols=181  Identities=15%  Similarity=0.170  Sum_probs=137.2

Q ss_pred             CCccCceecCccccCCCCCcEEecCCCcccCCCc-----------------chhhhc--CCCCCCEEEcCCCcCCccccc
Q 038163            3 FNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSK-----------------LLQSIG--SFSSLNSLYLSSNNFTETVTI   63 (207)
Q Consensus         3 ~n~~~~~~p~~~~~~l~~L~~L~ls~n~i~~~~~-----------------~~~~~~--~l~~L~~L~l~~n~~~~~~~~   63 (207)
                      .|.++| +|+. ++++++|++|++++|.+  .+.                 +|..++  ++++|++|++++|.+.+.+| 
T Consensus       192 ~n~l~~-ip~~-l~~l~~L~~L~Ls~n~l--~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p-  266 (636)
T 4eco_A          192 SNNITF-VSKA-VMRLTKLRQFYMGNSPF--VAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLP-  266 (636)
T ss_dssp             SCEEEE-ECGG-GGGCTTCCEEEEESCCC--CGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCC-
T ss_pred             cCCCcc-CCHH-HhcccCCCEEECcCCcc--ccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccCh-
Confidence            467776 7754 68888888888888888  343                 788877  88888888888888888888 


Q ss_pred             chhcccCCCCccEEEcCCCC-CCh-HHHHhhccc------ccc-----cCCcccceeccccccccCCCCCCCccceeccc
Q 038163           64 TTQELHNFTNMEYLKLDDSP-LHI-SLLQSIASI------FPL-----LKNLSMIGCEVNGVIRGQDFPHSKSLEHLDME  130 (207)
Q Consensus        64 ~~~~l~~l~~L~~L~l~~~~-~~~-~~~~~l~~l------~~L-----~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~  130 (207)
                        ..+.++++|++|++++|. +++ ..|..++.+      ++|     ++|.++ .+|..     +.+..+++|++|+++
T Consensus       267 --~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~-----~~l~~l~~L~~L~L~  338 (636)
T 4eco_A          267 --TFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVE-----TSLQKMKKLGMLECL  338 (636)
T ss_dssp             --TTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCH-----HHHTTCTTCCEEECC
T ss_pred             --HHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCch-----hhhccCCCCCEEeCc
Confidence              778888888888888887 777 677666544      444     677776 44420     036678888888888


Q ss_pred             ccccccCchhHHHHHhcCCCccEEEccCCccCcccccchhhhhcCCCC-CceEEecCCcCCCCccccccCCC--CCccC
Q 038163          131 FMRIALNTSFLQIISESMSSLKYLSLSYYTLGINSSETLNQGLCSLVH-LQELYIASNDLRGSLPWCMANMT--SLRIL  206 (207)
Q Consensus       131 ~~~n~~~~~~~~~l~~~~~~L~~L~l~~n~~~~~~~i~~~~~~~~~~~-L~~L~l~~n~l~~~~p~~~~~l~--~L~~l  206 (207)
                        +|.+++.+| .+. .+++|+.|++++|.+.   .+ |. .+..+++ |+.|++++|.+. .+|..+..++  +|+.|
T Consensus       339 --~N~l~g~ip-~~~-~l~~L~~L~L~~N~l~---~l-p~-~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L  407 (636)
T 4eco_A          339 --YNQLEGKLP-AFG-SEIKLASLNLAYNQIT---EI-PA-NFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAI  407 (636)
T ss_dssp             --SCCCEEECC-CCE-EEEEESEEECCSSEEE---EC-CT-TSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEE
T ss_pred             --CCcCccchh-hhC-CCCCCCEEECCCCccc---cc-cH-hhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEE
Confidence              888887777 666 7788888888888887   77 77 7888888 999999999988 6787776544  66654

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.83  E-value=1.7e-20  Score=160.44  Aligned_cols=186  Identities=19%  Similarity=0.230  Sum_probs=103.6

Q ss_pred             CCCCccCceecCccccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcC
Q 038163            1 MSFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLD   80 (207)
Q Consensus         1 l~~n~~~~~~p~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~   80 (207)
                      +++|.+.+ +++.+|..+++|++|++++|.+   ..+|..+..+++|++|++++|.+....|   ..+..+++|++|+++
T Consensus       261 l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l---~~lp~~l~~l~~L~~L~l~~n~l~~~~~---~~~~~l~~L~~L~l~  333 (606)
T 3t6q_A          261 LQKHYFFN-ISSNTFHCFSGLQELDLTATHL---SELPSGLVGLSTLKKLVLSANKFENLCQ---ISASNFPSLTHLSIK  333 (606)
T ss_dssp             CTTCCCSS-CCTTTTTTCTTCSEEECTTSCC---SCCCSSCCSCTTCCEEECTTCCCSBGGG---GCGGGCTTCSEEECC
T ss_pred             eecCccCc-cCHHHhccccCCCEEeccCCcc---CCCChhhcccccCCEEECccCCcCcCch---hhhhccCcCCEEECC
Confidence            35566664 5556678888888888888888   4677777788888888888888877666   566666777777777


Q ss_pred             CCCCChHHHH-hhcccccc-----cCCccccee--ccccccccCCCCCCCccceecccccccccCchhHHHHH-------
Q 038163           81 DSPLHISLLQ-SIASIFPL-----LKNLSMIGC--EVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFLQIIS-------  145 (207)
Q Consensus        81 ~~~~~~~~~~-~l~~l~~L-----~~n~~~~~~--~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~~~~~l~-------  145 (207)
                      +|.+.+..+. .+..+++|     ++|.+.+..  +.       .+..+++|++|+++  +|.+.+..+..+.       
T Consensus       334 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-------~~~~l~~L~~L~l~--~n~l~~~~~~~~~~l~~L~~  404 (606)
T 3t6q_A          334 GNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNL-------QLRNLSHLQSLNLS--YNEPLSLKTEAFKECPQLEL  404 (606)
T ss_dssp             SCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTT-------TTTTCTTCCEEECC--SCSCEEECTTTTTTCTTCSE
T ss_pred             CCCcccccchhhhhccCcCCEEECCCCccccccCcch-------hcccCCCCCEEECC--CCcCCcCCHHHhcCCccCCe
Confidence            7665533222 13333333     445554432  22       34444444444444  4444433333333       


Q ss_pred             -----------------hcCCCccEEEccCCccCcccccchhhhhcCCCCCceEEecCCcCCCC---ccccccCCCCCcc
Q 038163          146 -----------------ESMSSLKYLSLSYYTLGINSSETLNQGLCSLVHLQELYIASNDLRGS---LPWCMANMTSLRI  205 (207)
Q Consensus       146 -----------------~~~~~L~~L~l~~n~~~~~~~i~~~~~~~~~~~L~~L~l~~n~l~~~---~p~~~~~l~~L~~  205 (207)
                                       ..+++|+.|++++|.+.  +.. +. .+..+++|+.|++++|++.+.   .+..+..+++|+.
T Consensus       405 L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~--~~~-~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~  480 (606)
T 3t6q_A          405 LDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLD--ISS-EQ-LFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEI  480 (606)
T ss_dssp             EECTTCCEECCTTCCTTTTCTTCCEEECTTCCCB--TTC-TT-TTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCE
T ss_pred             EECCCCcCCCcccchhhhCcccCCEEECCCCccC--CcC-HH-HHhCCCCCCEEECCCCCCCccccccchhhccCCCccE
Confidence                             04445555555555554  222 33 455555555555555555431   1133445555554


Q ss_pred             C
Q 038163          206 L  206 (207)
Q Consensus       206 l  206 (207)
                      |
T Consensus       481 L  481 (606)
T 3t6q_A          481 L  481 (606)
T ss_dssp             E
T ss_pred             E
Confidence            3

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.83  E-value=1.7e-20  Score=160.51  Aligned_cols=183  Identities=22%  Similarity=0.240  Sum_probs=95.9

Q ss_pred             CCCccCceecCccccCCCCCcEEecCCCcccCCCcc--hhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEc
Q 038163            2 SFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKL--LQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKL   79 (207)
Q Consensus         2 ~~n~~~~~~p~~~~~~l~~L~~L~ls~n~i~~~~~~--~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l   79 (207)
                      ++|.+.+.+|+..+..+++|++|++++|.+  ....  +..+..+++|++|++++|.+.+..|   ..+..+++|++|++
T Consensus       333 ~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l--~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~---~~~~~l~~L~~L~l  407 (606)
T 3t6q_A          333 KGNTKRLELGTGCLENLENLRELDLSHDDI--ETSDCCNLQLRNLSHLQSLNLSYNEPLSLKT---EAFKECPQLELLDL  407 (606)
T ss_dssp             CSCSSCCBCCSSTTTTCTTCCEEECCSSCC--CEEEESTTTTTTCTTCCEEECCSCSCEEECT---TTTTTCTTCSEEEC
T ss_pred             CCCCcccccchhhhhccCcCCEEECCCCcc--ccccCcchhcccCCCCCEEECCCCcCCcCCH---HHhcCCccCCeEEC
Confidence            445555555555556666666666666666  2222  4455666666666666666655555   45555566666666


Q ss_pred             CCCCCChHHHHh-hcccccc-----cCCcccceeccccccccCCCCCCCccceecccccccccCchh---HHHHHhcCCC
Q 038163           80 DDSPLHISLLQS-IASIFPL-----LKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSF---LQIISESMSS  150 (207)
Q Consensus        80 ~~~~~~~~~~~~-l~~l~~L-----~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~~---~~~l~~~~~~  150 (207)
                      ++|.+.+..+.. +..+++|     ++|.+.+..+.       .+..+++|+.|+++  +|.+++..   +..+. .+++
T Consensus       408 ~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-------~~~~l~~L~~L~L~--~n~l~~~~~~~~~~~~-~l~~  477 (606)
T 3t6q_A          408 AFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQ-------LFDGLPALQHLNLQ--GNHFPKGNIQKTNSLQ-TLGR  477 (606)
T ss_dssp             TTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTT-------TTTTCTTCCEEECT--TCBCGGGEECSSCGGG-GCTT
T ss_pred             CCCcCCCcccchhhhCcccCCEEECCCCccCCcCHH-------HHhCCCCCCEEECC--CCCCCccccccchhhc-cCCC
Confidence            666554332211 2233322     44555444343       45555556666665  55554311   12334 4555


Q ss_pred             ccEEEccCCccCcccccchhhhhcCCCCCceEEecCCcCCCCccccccCCCCC
Q 038163          151 LKYLSLSYYTLGINSSETLNQGLCSLVHLQELYIASNDLRGSLPWCMANMTSL  203 (207)
Q Consensus       151 L~~L~l~~n~~~~~~~i~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L  203 (207)
                      |+.|++++|.++  +.. |. .+..+++|+.|++++|++.+..|..+..+++|
T Consensus       478 L~~L~Ls~n~l~--~~~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L  526 (606)
T 3t6q_A          478 LEILVLSFCDLS--SID-QH-AFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI  526 (606)
T ss_dssp             CCEEECTTSCCC--EEC-TT-TTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC
T ss_pred             ccEEECCCCccC--ccC-hh-hhccccCCCEEECCCCccCcCChhHhCccccc
Confidence            555555555555  222 33 55555555555555555555555555555544

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.83  E-value=6.6e-20  Score=142.29  Aligned_cols=172  Identities=19%  Similarity=0.174  Sum_probs=141.2

Q ss_pred             CCCCccCceecCccccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcC
Q 038163            1 MSFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLD   80 (207)
Q Consensus         1 l~~n~~~~~~p~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~   80 (207)
                      |++|.+. .+|+..|..+++|++|++++|.+  ....+..+..+++|++|++++|.++...+   ..+..+++|++|+++
T Consensus        44 l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l--~~i~~~~~~~l~~L~~L~l~~n~l~~~~~---~~~~~l~~L~~L~l~  117 (270)
T 2o6q_A           44 LQSNKLS-SLPSKAFHRLTKLRLLYLNDNKL--QTLPAGIFKELKNLETLWVTDNKLQALPI---GVFDQLVNLAELRLD  117 (270)
T ss_dssp             CCSSCCS-CCCTTSSSSCTTCCEEECCSSCC--SCCCTTTTSSCTTCCEEECCSSCCCCCCT---TTTTTCSSCCEEECC
T ss_pred             CcCCCCC-eeCHHHhcCCCCCCEEECCCCcc--CeeChhhhcCCCCCCEEECCCCcCCcCCH---hHcccccCCCEEECC
Confidence            5678888 46777789999999999999999  44334456889999999999999998766   677889999999999


Q ss_pred             CCCCChHHHHhhcccccc-----cCCcccceeccccccccCCCCCCCccceecccccccccCchhHHHHHhcCCCccEEE
Q 038163           81 DSPLHISLLQSIASIFPL-----LKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLS  155 (207)
Q Consensus        81 ~~~~~~~~~~~l~~l~~L-----~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L~  155 (207)
                      +|.+....+..+..+++|     ++|.+.+..+.       .+..+++|+.|+++  +|.++...+..+. .+++|+.|+
T Consensus       118 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-------~~~~l~~L~~L~L~--~n~l~~~~~~~~~-~l~~L~~L~  187 (270)
T 2o6q_A          118 RNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKG-------VFDKLTSLKELRLY--NNQLKRVPEGAFD-KLTELKTLK  187 (270)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT-------TTTTCTTCCEEECC--SSCCSCCCTTTTT-TCTTCCEEE
T ss_pred             CCccCeeCHHHhCcCcCCCEEECCCCcCCccCHh-------HccCCcccceeEec--CCcCcEeChhHhc-cCCCcCEEE
Confidence            999886555555555555     78888765444       68899999999999  9999866566677 889999999


Q ss_pred             ccCCccCcccccchhhhhcCCCCCceEEecCCcCCCC
Q 038163          156 LSYYTLGINSSETLNQGLCSLVHLQELYIASNDLRGS  192 (207)
Q Consensus       156 l~~n~~~~~~~i~~~~~~~~~~~L~~L~l~~n~l~~~  192 (207)
                      +++|.++   .+ +...+..+++|+.|++++|++...
T Consensus       188 L~~N~l~---~~-~~~~~~~l~~L~~L~l~~N~~~c~  220 (270)
T 2o6q_A          188 LDNNQLK---RV-PEGAFDSLEKLKMLQLQENPWDCT  220 (270)
T ss_dssp             CCSSCCS---CC-CTTTTTTCTTCCEEECCSSCBCCS
T ss_pred             CCCCcCC---cC-CHHHhccccCCCEEEecCCCeeCC
Confidence            9999998   66 553688899999999999998644

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.83  E-value=4.7e-21  Score=154.09  Aligned_cols=171  Identities=19%  Similarity=0.150  Sum_probs=120.2

Q ss_pred             CCCCccCceecCccccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcC
Q 038163            1 MSFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLD   80 (207)
Q Consensus         1 l~~n~~~~~~p~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~   80 (207)
                      |++|.+. .+|+..+.++++|++|++++|.+  ....+..+..+++|++|++++|.++...+   ..+..+++|++|+++
T Consensus        59 l~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l--~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~---~~~~~l~~L~~L~L~  132 (353)
T 2z80_A           59 LSNNRIT-YISNSDLQRCVNLQALVLTSNGI--NTIEEDSFSSLGSLEHLDLSYNYLSNLSS---SWFKPLSSLTFLNLL  132 (353)
T ss_dssp             CTTSCCC-EECTTTTTTCTTCCEEECTTSCC--CEECTTTTTTCTTCCEEECCSSCCSSCCH---HHHTTCTTCSEEECT
T ss_pred             CCCCcCc-ccCHHHhccCCCCCEEECCCCcc--CccCHhhcCCCCCCCEEECCCCcCCcCCH---hHhCCCccCCEEECC
Confidence            4567777 46666678888888888888888  44455677888888888888888876555   447778888888888


Q ss_pred             CCCCChHHH-Hhhcccccc-----cCC-cccceeccccccccCCCCCCCccceecccccccccCchhHHHHHhcCCCccE
Q 038163           81 DSPLHISLL-QSIASIFPL-----LKN-LSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKY  153 (207)
Q Consensus        81 ~~~~~~~~~-~~l~~l~~L-----~~n-~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~  153 (207)
                      +|.+..... ..+..+++|     ++| .+....+.       .+..+++|+.|+++  +|.+++..+..+. .+++|++
T Consensus       133 ~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~-------~~~~l~~L~~L~l~--~n~l~~~~~~~l~-~l~~L~~  202 (353)
T 2z80_A          133 GNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRK-------DFAGLTFLEELEID--ASDLQSYEPKSLK-SIQNVSH  202 (353)
T ss_dssp             TCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTT-------TTTTCCEEEEEEEE--ETTCCEECTTTTT-TCSEEEE
T ss_pred             CCCCcccCchhhhccCCCCcEEECCCCccccccCHH-------HccCCCCCCEEECC--CCCcCccCHHHHh-ccccCCe
Confidence            887763211 134444444     444 34443344       67778888888888  8888766677777 7788888


Q ss_pred             EEccCCccCcccccchhhhhcCCCCCceEEecCCcCCC
Q 038163          154 LSLSYYTLGINSSETLNQGLCSLVHLQELYIASNDLRG  191 (207)
Q Consensus       154 L~l~~n~~~~~~~i~~~~~~~~~~~L~~L~l~~n~l~~  191 (207)
                      |++++|.+.   .+ +...+..+++|+.|++++|.+.+
T Consensus       203 L~l~~n~l~---~~-~~~~~~~~~~L~~L~L~~n~l~~  236 (353)
T 2z80_A          203 LILHMKQHI---LL-LEIFVDVTSSVECLELRDTDLDT  236 (353)
T ss_dssp             EEEECSCST---TH-HHHHHHHTTTEEEEEEESCBCTT
T ss_pred             ecCCCCccc---cc-hhhhhhhcccccEEECCCCcccc
Confidence            888888876   66 55345557888888888888775

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.83  E-value=2.9e-21  Score=166.55  Aligned_cols=183  Identities=10%  Similarity=0.111  Sum_probs=155.8

Q ss_pred             CCCCccCce-----------------ecCcccc--CCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCc-CCc-
Q 038163            1 MSFNEINNL-----------------VVPQGYN--GLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNN-FTE-   59 (207)
Q Consensus         1 l~~n~~~~~-----------------~p~~~~~--~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~-~~~-   59 (207)
                      |++|.+.|.                 +|+. +.  ++++|++|++++|.+  .+.+|..+.++++|++|++++|. +++ 
T Consensus       213 Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~-l~~~~l~~L~~L~L~~n~l--~~~~p~~l~~l~~L~~L~Ls~n~~l~~~  289 (636)
T 4eco_A          213 MGNSPFVAENICEAWENENSEYAQQYKTED-LKWDNLKDLTDVEVYNCPN--LTKLPTFLKALPEMQLINVACNRGISGE  289 (636)
T ss_dssp             EESCCCCGGGBSSSCSCTTSHHHHHHTTSC-CCGGGCTTCCEEEEECCTT--CSSCCTTTTTCSSCCEEECTTCTTSCHH
T ss_pred             CcCCccccccccccccccccchhcccCchh-hhhcccCCCCEEEecCCcC--CccChHHHhcCCCCCEEECcCCCCCccc
Confidence            457788874                 8855 67  999999999999999  68899999999999999999998 998 


Q ss_pred             ccccchhcccCC------CCccEEEcCCCCCChHHHH--hhcccccc-----cCCcccceeccccccccCCCCCCCccce
Q 038163           60 TVTITTQELHNF------TNMEYLKLDDSPLHISLLQ--SIASIFPL-----LKNLSMIGCEVNGVIRGQDFPHSKSLEH  126 (207)
Q Consensus        60 ~~~~~~~~l~~l------~~L~~L~l~~~~~~~~~~~--~l~~l~~L-----~~n~~~~~~~~~~~~~~~~~~~~~~L~~  126 (207)
                      .+|   ..+..+      ++|++|++++|.++ .++.  .++.+++|     ++|.+.|.+|        .+..+++|+.
T Consensus       290 ~lp---~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip--------~~~~l~~L~~  357 (636)
T 4eco_A          290 QLK---DDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP--------AFGSEIKLAS  357 (636)
T ss_dssp             HHH---HHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC--------CCEEEEEESE
T ss_pred             cch---HHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh--------hhCCCCCCCE
Confidence            788   566655      89999999999998 6666  67766666     8888887776        5778899999


Q ss_pred             ecccccccccCchhHHHHHhcCCC-ccEEEccCCccCcccccchhhhhcCCC--CCceEEecCCcCCCCcccccc-----
Q 038163          127 LDMEFMRIALNTSFLQIISESMSS-LKYLSLSYYTLGINSSETLNQGLCSLV--HLQELYIASNDLRGSLPWCMA-----  198 (207)
Q Consensus       127 L~l~~~~n~~~~~~~~~l~~~~~~-L~~L~l~~n~~~~~~~i~~~~~~~~~~--~L~~L~l~~n~l~~~~p~~~~-----  198 (207)
                      |+++  +|.++ .+|..+. .+++ |+.|++++|.++   .+ |. .+....  +|+.|++++|.+.+.+|..+.     
T Consensus       358 L~L~--~N~l~-~lp~~l~-~l~~~L~~L~Ls~N~l~---~l-p~-~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~  428 (636)
T 4eco_A          358 LNLA--YNQIT-EIPANFC-GFTEQVENLSFAHNKLK---YI-PN-IFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPT  428 (636)
T ss_dssp             EECC--SSEEE-ECCTTSE-EECTTCCEEECCSSCCS---SC-CS-CCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSS
T ss_pred             EECC--CCccc-cccHhhh-hhcccCcEEEccCCcCc---cc-ch-hhhhcccCccCEEECcCCcCCCcchhhhcccccc
Confidence            9999  99998 7777788 8888 999999999998   88 76 666654  899999999999998888888     


Q ss_pred             --CCCCCccCC
Q 038163          199 --NMTSLRILD  207 (207)
Q Consensus       199 --~l~~L~~l~  207 (207)
                        .+++|+.|+
T Consensus       429 ~~~~~~L~~L~  439 (636)
T 4eco_A          429 PFKGINVSSIN  439 (636)
T ss_dssp             CCCCCCEEEEE
T ss_pred             cccCCCCCEEE
Confidence              777877653

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.83  E-value=3.9e-20  Score=148.68  Aligned_cols=189  Identities=20%  Similarity=0.165  Sum_probs=144.3

Q ss_pred             CCCCccCceecCccccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcC
Q 038163            1 MSFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLD   80 (207)
Q Consensus         1 l~~n~~~~~~p~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~   80 (207)
                      |++|.+.+ +++.+|.++++|++|++++|.+  ....+..+..+++|++|++++|.++. +|. ...+..+++|++|+++
T Consensus        83 L~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l--~~~~~~~~~~l~~L~~L~L~~n~l~~-l~~-~~~~~~l~~L~~L~l~  157 (353)
T 2z80_A           83 LTSNGINT-IEEDSFSSLGSLEHLDLSYNYL--SNLSSSWFKPLSSLTFLNLLGNPYKT-LGE-TSLFSHLTKLQILRVG  157 (353)
T ss_dssp             CTTSCCCE-ECTTTTTTCTTCCEEECCSSCC--SSCCHHHHTTCTTCSEEECTTCCCSS-SCS-SCSCTTCTTCCEEEEE
T ss_pred             CCCCccCc-cCHhhcCCCCCCCEEECCCCcC--CcCCHhHhCCCccCCEEECCCCCCcc-cCc-hhhhccCCCCcEEECC
Confidence            57888885 5567789999999999999999  44344458999999999999999986 440 0257789999999999


Q ss_pred             CCC-CChHHHHhhcccccc-----cCCcccceeccccccccCCCCCCCccceecccccccccCchhHHHHHhcCCCccEE
Q 038163           81 DSP-LHISLLQSIASIFPL-----LKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYL  154 (207)
Q Consensus        81 ~~~-~~~~~~~~l~~l~~L-----~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L  154 (207)
                      +|. +....+..+..+++|     ++|.+.+..+.       .+..+++|++|+++  +|.++......+. .+++|+.|
T Consensus       158 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-------~l~~l~~L~~L~l~--~n~l~~~~~~~~~-~~~~L~~L  227 (353)
T 2z80_A          158 NMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPK-------SLKSIQNVSHLILH--MKQHILLLEIFVD-VTSSVECL  227 (353)
T ss_dssp             ESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTT-------TTTTCSEEEEEEEE--CSCSTTHHHHHHH-HTTTEEEE
T ss_pred             CCccccccCHHHccCCCCCCEEECCCCCcCccCHH-------HHhccccCCeecCC--CCccccchhhhhh-hcccccEE
Confidence            984 554434555555555     77888877677       88999999999999  9998743333444 68899999


Q ss_pred             EccCCccCccc-----------------------------ccchhhhhcCCCCCceEEecCCcCCCCcccc-ccCCCCCc
Q 038163          155 SLSYYTLGINS-----------------------------SETLNQGLCSLVHLQELYIASNDLRGSLPWC-MANMTSLR  204 (207)
Q Consensus       155 ~l~~n~~~~~~-----------------------------~i~~~~~~~~~~~L~~L~l~~n~l~~~~p~~-~~~l~~L~  204 (207)
                      ++++|.++...                             .+ |. .+..+++|+.|++++|++.. +|.. +..+++|+
T Consensus       228 ~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l-~~-~l~~l~~L~~L~Ls~N~l~~-i~~~~~~~l~~L~  304 (353)
T 2z80_A          228 ELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQV-MK-LLNQISGLLELEFSRNQLKS-VPDGIFDRLTSLQ  304 (353)
T ss_dssp             EEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHH-HH-HHHTCTTCCEEECCSSCCCC-CCTTTTTTCTTCC
T ss_pred             ECCCCccccccccccccccccchhhccccccccccCcchhhh-HH-HHhcccCCCEEECCCCCCCc-cCHHHHhcCCCCC
Confidence            99999887100                             13 33 57788999999999999984 5544 68888888


Q ss_pred             cCC
Q 038163          205 ILD  207 (207)
Q Consensus       205 ~l~  207 (207)
                      .|+
T Consensus       305 ~L~  307 (353)
T 2z80_A          305 KIW  307 (353)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            764

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.83  E-value=9.5e-20  Score=139.93  Aligned_cols=168  Identities=19%  Similarity=0.147  Sum_probs=127.4

Q ss_pred             CCCccCceecCccccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcCC
Q 038163            2 SFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDD   81 (207)
Q Consensus         2 ~~n~~~~~~p~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~~   81 (207)
                      +++.+. .+|... .  +.+++|++++|.+  ....+..+..+++|++|++++|.+++..+   ..+..+++|++|++++
T Consensus        22 ~~~~l~-~~p~~~-~--~~l~~L~L~~n~l--~~~~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~L~~   92 (251)
T 3m19_A           22 QGKSLD-SVPSGI-P--ADTEKLDLQSTGL--ATLSDATFRGLTKLTWLNLDYNQLQTLSA---GVFDDLTELGTLGLAN   92 (251)
T ss_dssp             TTCCCS-SCCSCC-C--TTCCEEECTTSCC--CCCCTTTTTTCTTCCEEECTTSCCCCCCT---TTTTTCTTCCEEECTT
T ss_pred             CCCCcc-ccCCCC-C--CCCCEEEccCCCc--CccCHhHhcCcccCCEEECCCCcCCccCH---hHhccCCcCCEEECCC
Confidence            456666 577553 2  6788999999999  56666678899999999999999998777   6788899999999999


Q ss_pred             CCCChHHHHhhcccccc-----cCCcccceeccccccccCCCCCCCccceecccccccccCchhHHHHHhcCCCccEEEc
Q 038163           82 SPLHISLLQSIASIFPL-----LKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSL  156 (207)
Q Consensus        82 ~~~~~~~~~~l~~l~~L-----~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L~l  156 (207)
                      |.+....+..+..+++|     ++|.+++..+.       .+..+++|+.|+++  +|.+++..+..+. .+++|+.|++
T Consensus        93 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-------~~~~l~~L~~L~Ls--~N~l~~~~~~~~~-~l~~L~~L~L  162 (251)
T 3m19_A           93 NQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSG-------VFDRLTKLKELRLN--TNQLQSIPAGAFD-KLTNLQTLSL  162 (251)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT-------TTTTCTTCCEEECC--SSCCCCCCTTTTT-TCTTCCEEEC
T ss_pred             CcccccChhHhcccCCCCEEEcCCCcCCCcChh-------HhccCCcccEEECc--CCcCCccCHHHcC-cCcCCCEEEC
Confidence            99874443444444444     77777764444       56788888888888  8888755555666 7888888888


Q ss_pred             cCCccCcccccchhhhhcCCCCCceEEecCCcCCCC
Q 038163          157 SYYTLGINSSETLNQGLCSLVHLQELYIASNDLRGS  192 (207)
Q Consensus       157 ~~n~~~~~~~i~~~~~~~~~~~L~~L~l~~n~l~~~  192 (207)
                      ++|.++   .+ +...+..+++|+.|++++|++...
T Consensus       163 ~~N~l~---~~-~~~~~~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          163 STNQLQ---SV-PHGAFDRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             CSSCCS---CC-CTTTTTTCTTCCEEECCSCCBCTT
T ss_pred             CCCcCC---cc-CHHHHhCCCCCCEEEeeCCceeCC
Confidence            888887   54 333677888888888888888754

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.82  E-value=4.1e-20  Score=150.38  Aligned_cols=80  Identities=18%  Similarity=0.102  Sum_probs=44.3

Q ss_pred             CCCCCccceecccccccccCchhHHHHHhcCCCccEEEccCCccCcccccchhhhhcCCCCCceEEecCCcCCCCccccc
Q 038163          118 FPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSLSYYTLGINSSETLNQGLCSLVHLQELYIASNDLRGSLPWCM  197 (207)
Q Consensus       118 ~~~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L~l~~n~~~~~~~i~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~  197 (207)
                      +..+++|+.|+++  +|.+++..+..+. .+++|+.|++++|.++   .+ +. .+..+++|+.|++++|++. .+|..+
T Consensus       244 l~~l~~L~~L~Ls--~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~---~~-~~-~~~~l~~L~~L~L~~n~l~-~~~~~~  314 (390)
T 3o6n_A          244 LLNYPGLVEVDLS--YNELEKIMYHPFV-KMQRLERLYISNNRLV---AL-NL-YGQPIPTLKVLDLSHNHLL-HVERNQ  314 (390)
T ss_dssp             GGGCTTCSEEECC--SSCCCEEESGGGT-TCSSCCEEECCSSCCC---EE-EC-SSSCCTTCCEEECCSSCCC-CCGGGH
T ss_pred             HcCCCCccEEECC--CCcCCCcChhHcc-ccccCCEEECCCCcCc---cc-Cc-ccCCCCCCCEEECCCCcce-ecCccc
Confidence            3345556666666  6666554455555 5666666666666665   44 43 4445566666666666655 334444


Q ss_pred             cCCCCCccC
Q 038163          198 ANMTSLRIL  206 (207)
Q Consensus       198 ~~l~~L~~l  206 (207)
                      ..+++|+.|
T Consensus       315 ~~l~~L~~L  323 (390)
T 3o6n_A          315 PQFDRLENL  323 (390)
T ss_dssp             HHHTTCSEE
T ss_pred             cccCcCCEE
Confidence            445555443

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.82  E-value=5.4e-20  Score=142.96  Aligned_cols=159  Identities=19%  Similarity=0.194  Sum_probs=98.1

Q ss_pred             ccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcCCCCCChHHHHhhcc
Q 038163           15 YNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDDSPLHISLLQSIAS   94 (207)
Q Consensus        15 ~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~   94 (207)
                      +..+++|++|++++|.+  .. + ..+..+++|++|++++|.+++..+   ..+..+++|++|++++|.+....+..+..
T Consensus        59 l~~l~~L~~L~l~~n~l--~~-~-~~l~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  131 (272)
T 3rfs_A           59 IQYLPNVRYLALGGNKL--HD-I-SALKELTNLTYLILTGNQLQSLPN---GVFDKLTNLKELVLVENQLQSLPDGVFDK  131 (272)
T ss_dssp             GGGCTTCCEEECTTSCC--CC-C-GGGTTCTTCCEEECTTSCCCCCCT---TTTTTCTTCCEEECTTSCCCCCCTTTTTT
T ss_pred             cccCCCCcEEECCCCCC--CC-c-hhhcCCCCCCEEECCCCccCccCh---hHhcCCcCCCEEECCCCcCCccCHHHhcc
Confidence            56677777777777777  22 2 356677777777777777776555   45666777777777777766433333343


Q ss_pred             cccc-----cCCcccceeccccccccCCCCCCCccceecccccccccCchhHHHHHhcCCCccEEEccCCccCcccccch
Q 038163           95 IFPL-----LKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSLSYYTLGINSSETL  169 (207)
Q Consensus        95 l~~L-----~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L~l~~n~~~~~~~i~~  169 (207)
                      +++|     ++|.+++..+.       .+..+++|+.|+++  +|.+++..+..+. .+++|+.|++++|.+.   .+ +
T Consensus       132 l~~L~~L~L~~n~l~~~~~~-------~~~~l~~L~~L~l~--~n~l~~~~~~~~~-~l~~L~~L~L~~N~l~---~~-~  197 (272)
T 3rfs_A          132 LTNLTYLNLAHNQLQSLPKG-------VFDKLTNLTELDLS--YNQLQSLPEGVFD-KLTQLKDLRLYQNQLK---SV-P  197 (272)
T ss_dssp             CTTCCEEECCSSCCCCCCTT-------TTTTCTTCCEEECC--SSCCCCCCTTTTT-TCTTCCEEECCSSCCS---CC-C
T ss_pred             CCCCCEEECCCCccCccCHH-------HhccCccCCEEECC--CCCcCccCHHHhc-CCccCCEEECCCCcCC---cc-C
Confidence            3333     55666554333       45666677777777  7766644444445 5667777777777766   33 3


Q ss_pred             hhhhcCCCCCceEEecCCcCCCCcc
Q 038163          170 NQGLCSLVHLQELYIASNDLRGSLP  194 (207)
Q Consensus       170 ~~~~~~~~~L~~L~l~~n~l~~~~p  194 (207)
                      ...+..+++|+.|++++|.+.+..|
T Consensus       198 ~~~~~~l~~L~~L~l~~N~~~~~~~  222 (272)
T 3rfs_A          198 DGVFDRLTSLQYIWLHDNPWDCTCP  222 (272)
T ss_dssp             TTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred             HHHHhCCcCCCEEEccCCCccccCc
Confidence            2256666777777777776665433

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.82  E-value=1.1e-19  Score=142.67  Aligned_cols=178  Identities=19%  Similarity=0.111  Sum_probs=132.9

Q ss_pred             CCCccCceecCccccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcCC
Q 038163            2 SFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDD   81 (207)
Q Consensus         2 ~~n~~~~~~p~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~~   81 (207)
                      ++|.+. .+|+.+   .+++++|++++|.+  ....+..+..+++|++|++++|.++...+     ...+++|++|++++
T Consensus        18 ~~~~l~-~ip~~~---~~~l~~L~L~~N~l--~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-----~~~l~~L~~L~Ls~   86 (290)
T 1p9a_G           18 DKRNLT-ALPPDL---PKDTTILHLSENLL--YTFSLATLMPYTRLTQLNLDRAELTKLQV-----DGTLPVLGTLDLSH   86 (290)
T ss_dssp             TTSCCS-SCCSCC---CTTCCEEECTTSCC--SEEEGGGGTTCTTCCEEECTTSCCCEEEC-----CSCCTTCCEEECCS
T ss_pred             CCCCCC-cCCCCC---CCCCCEEEcCCCcC--CccCHHHhhcCCCCCEEECCCCccCcccC-----CCCCCcCCEEECCC
Confidence            456666 577554   26788899999998  55566788888999999999998886533     36788899999998


Q ss_pred             CCCChHHHHhhcccccc-----cCCcccceeccccccccCCCCCCCccceecccccccccCchhHHHHHhcCCCccEEEc
Q 038163           82 SPLHISLLQSIASIFPL-----LKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSL  156 (207)
Q Consensus        82 ~~~~~~~~~~l~~l~~L-----~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L~l  156 (207)
                      |.+. ..+..+..+++|     ++|.+++..+.       .+..+++|++|+++  +|.++...+..+. .+++|+.|++
T Consensus        87 N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~-------~~~~l~~L~~L~L~--~N~l~~~~~~~~~-~l~~L~~L~L  155 (290)
T 1p9a_G           87 NQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLG-------ALRGLGELQELYLK--GNELKTLPPGLLT-PTPKLEKLSL  155 (290)
T ss_dssp             SCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSS-------TTTTCTTCCEEECT--TSCCCCCCTTTTT-TCTTCCEEEC
T ss_pred             CcCC-cCchhhccCCCCCEEECCCCcCcccCHH-------HHcCCCCCCEEECC--CCCCCccChhhcc-cccCCCEEEC
Confidence            8886 444444444444     77777765445       78888899999999  8888855555566 7888999999


Q ss_pred             cCCccCcccccchhhhhcCCCCCceEEecCCcCCCCccccccCCCCCccC
Q 038163          157 SYYTLGINSSETLNQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRIL  206 (207)
Q Consensus       157 ~~n~~~~~~~i~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l  206 (207)
                      ++|.++   .+ +...+..+++|+.|++++|++. .+|..+...++|+.+
T Consensus       156 ~~N~l~---~l-~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l  200 (290)
T 1p9a_G          156 ANNNLT---EL-PAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFA  200 (290)
T ss_dssp             TTSCCS---CC-CTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEE
T ss_pred             CCCcCC---cc-CHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeE
Confidence            999888   66 5546778889999999999888 467666666666654

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.82  E-value=1.2e-19  Score=144.46  Aligned_cols=56  Identities=23%  Similarity=0.374  Sum_probs=43.7

Q ss_pred             CCCCccCceecCccccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCc
Q 038163            1 MSFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTE   59 (207)
Q Consensus         1 l~~n~~~~~~p~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~   59 (207)
                      |++|.+.+ +++..|..+++|++|++++|.+  ....|..+..+++|++|++++|.++.
T Consensus        59 L~~n~i~~-~~~~~~~~l~~L~~L~L~~n~l--~~~~~~~~~~l~~L~~L~Ls~n~l~~  114 (330)
T 1xku_A           59 LQNNKITE-IKDGDFKNLKNLHTLILINNKI--SKISPGAFAPLVKLERLYLSKNQLKE  114 (330)
T ss_dssp             CCSSCCCC-BCTTTTTTCTTCCEEECCSSCC--CCBCTTTTTTCTTCCEEECCSSCCSB
T ss_pred             CCCCcCCE-eChhhhccCCCCCEEECCCCcC--CeeCHHHhcCCCCCCEEECCCCcCCc
Confidence            46777774 5556678888898999988888  45557788888888888888887764

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.82  E-value=5.4e-20  Score=157.56  Aligned_cols=80  Identities=18%  Similarity=0.102  Sum_probs=48.2

Q ss_pred             CCCCCccceecccccccccCchhHHHHHhcCCCccEEEccCCccCcccccchhhhhcCCCCCceEEecCCcCCCCccccc
Q 038163          118 FPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSLSYYTLGINSSETLNQGLCSLVHLQELYIASNDLRGSLPWCM  197 (207)
Q Consensus       118 ~~~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L~l~~n~~~~~~~i~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~  197 (207)
                      +..+++|+.|+++  +|.+++..|..+. .+++|+.|++++|.++   .+ +. .+..+++|+.|++++|.+. .+|..+
T Consensus       250 l~~l~~L~~L~Ls--~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~---~l-~~-~~~~l~~L~~L~Ls~N~l~-~i~~~~  320 (597)
T 3oja_B          250 LLNYPGLVEVDLS--YNELEKIMYHPFV-KMQRLERLYISNNRLV---AL-NL-YGQPIPTLKVLDLSHNHLL-HVERNQ  320 (597)
T ss_dssp             GGGCTTCSEEECC--SSCCCEEESGGGT-TCSSCCEEECTTSCCC---EE-EC-SSSCCTTCCEEECCSSCCC-CCGGGH
T ss_pred             hccCCCCCEEECC--CCccCCCCHHHhc-CccCCCEEECCCCCCC---CC-Cc-ccccCCCCcEEECCCCCCC-ccCccc
Confidence            4455666666666  6666655555555 6666666666666665   45 44 4555666666666666666 345555


Q ss_pred             cCCCCCccC
Q 038163          198 ANMTSLRIL  206 (207)
Q Consensus       198 ~~l~~L~~l  206 (207)
                      ..+++|+.|
T Consensus       321 ~~l~~L~~L  329 (597)
T 3oja_B          321 PQFDRLENL  329 (597)
T ss_dssp             HHHTTCSEE
T ss_pred             ccCCCCCEE
Confidence            555555544

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.82  E-value=3.3e-21  Score=170.65  Aligned_cols=174  Identities=13%  Similarity=0.154  Sum_probs=102.6

Q ss_pred             CccCceecCccccCCCCCcEEecCCCcccCCC-----------------cchhhhc--CCCCCCEEEcCCCcCCcccccc
Q 038163            4 NEINNLVVPQGYNGLRKLKSLDLSGVGVRDGS-----------------KLLQSIG--SFSSLNSLYLSSNNFTETVTIT   64 (207)
Q Consensus         4 n~~~~~~p~~~~~~l~~L~~L~ls~n~i~~~~-----------------~~~~~~~--~l~~L~~L~l~~n~~~~~~~~~   64 (207)
                      |.+.+ +|+. +.++++|++|++++|.+  .+                 .+|..++  .+++|++|++++|.+.+.+|  
T Consensus       435 N~L~~-IP~~-l~~L~~L~~L~Ls~N~L--sg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP--  508 (876)
T 4ecn_A          435 NRITF-ISKA-IQRLTKLQIIYFANSPF--TYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLP--  508 (876)
T ss_dssp             CEEEE-ECGG-GGGCTTCCEEEEESCCC--CGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCC--
T ss_pred             Ccccc-hhHH-HhcCCCCCEEECcCCcC--CCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccCh--
Confidence            45554 5533 56666666666666666  23                 2566555  66666666666666666666  


Q ss_pred             hhcccCCCCccEEEcCCCC-CCh-HHHHhhcccc-------cc-----cCCcccceeccccccccCCCCCCCccceeccc
Q 038163           65 TQELHNFTNMEYLKLDDSP-LHI-SLLQSIASIF-------PL-----LKNLSMIGCEVNGVIRGQDFPHSKSLEHLDME  130 (207)
Q Consensus        65 ~~~l~~l~~L~~L~l~~~~-~~~-~~~~~l~~l~-------~L-----~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~  130 (207)
                       ..+.++++|++|++++|. +++ ..|..++.+.       +|     ++|.+. .+|..     +.+.++++|+.|+++
T Consensus       509 -~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~-----~~l~~L~~L~~L~Ls  581 (876)
T 4ecn_A          509 -DFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPAS-----ASLQKMVKLGLLDCV  581 (876)
T ss_dssp             -GGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCH-----HHHTTCTTCCEEECT
T ss_pred             -HHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCCh-----hhhhcCCCCCEEECC
Confidence             566666666666666665 655 4555444332       33     555555 33310     025566666666766


Q ss_pred             ccccccCchhHHHHHhcCCCccEEEccCCccCcccccchhhhhcCCCC-CceEEecCCcCCCCccccccCCC
Q 038163          131 FMRIALNTSFLQIISESMSSLKYLSLSYYTLGINSSETLNQGLCSLVH-LQELYIASNDLRGSLPWCMANMT  201 (207)
Q Consensus       131 ~~~n~~~~~~~~~l~~~~~~L~~L~l~~n~~~~~~~i~~~~~~~~~~~-L~~L~l~~n~l~~~~p~~~~~l~  201 (207)
                        +|.++ .+| .+. .+++|+.|++++|.+.   .+ |. .+..+++ |+.|++++|.+. .+|..+..++
T Consensus       582 --~N~l~-~lp-~~~-~L~~L~~L~Ls~N~l~---~l-p~-~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~  642 (876)
T 4ecn_A          582 --HNKVR-HLE-AFG-TNVKLTDLKLDYNQIE---EI-PE-DFCAFTDQVEGLGFSHNKLK-YIPNIFNAKS  642 (876)
T ss_dssp             --TSCCC-BCC-CCC-TTSEESEEECCSSCCS---CC-CT-TSCEECTTCCEEECCSSCCC-SCCSCCCTTC
T ss_pred             --CCCcc-cch-hhc-CCCcceEEECcCCccc---cc-hH-HHhhccccCCEEECcCCCCC-cCchhhhccc
Confidence              66666 455 455 5666677777766666   56 55 5666666 777777777766 5565555443

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.81  E-value=1.2e-19  Score=144.63  Aligned_cols=186  Identities=18%  Similarity=0.195  Sum_probs=108.3

Q ss_pred             CCCCccCceecCccccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccc----------------
Q 038163            1 MSFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTIT----------------   64 (207)
Q Consensus         1 l~~n~~~~~~p~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~----------------   64 (207)
                      |++|.+. .+++..|.++++|++|++++|.+  ....|..+..+++|++|++++|.++...+..                
T Consensus        61 l~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l--~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~L~~L~l~~n~i~~  137 (332)
T 2ft3_A           61 LQNNDIS-ELRKDDFKGLQHLYALVLVNNKI--SKIHEKAFSPLRKLQKLYISKNHLVEIPPNLPSSLVELRIHDNRIRK  137 (332)
T ss_dssp             CCSSCCC-EECTTTTTTCTTCCEEECCSSCC--CEECGGGSTTCTTCCEEECCSSCCCSCCSSCCTTCCEEECCSSCCCC
T ss_pred             CCCCcCC-ccCHhHhhCCCCCcEEECCCCcc--CccCHhHhhCcCCCCEEECCCCcCCccCccccccCCEEECCCCccCc
Confidence            4566666 35555677788888888888877  4445667777777777777777666321100                


Q ss_pred             --hhcccCCCCccEEEcCCCCCCh--HHHHhhc--ccccc--cCCcccceeccc-----cc----------cccCCCCCC
Q 038163           65 --TQELHNFTNMEYLKLDDSPLHI--SLLQSIA--SIFPL--LKNLSMIGCEVN-----GV----------IRGQDFPHS  121 (207)
Q Consensus        65 --~~~l~~l~~L~~L~l~~~~~~~--~~~~~l~--~l~~L--~~n~~~~~~~~~-----~~----------~~~~~~~~~  121 (207)
                        ...+..+++|++|++++|.+..  ..+..+.  .++.|  ++|.+++ +|..     ..          ...+.+..+
T Consensus       138 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~-l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l  216 (332)
T 2ft3_A          138 VPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTG-IPKDLPETLNELHLDHNKIQAIELEDLLRY  216 (332)
T ss_dssp             CCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSS-CCSSSCSSCSCCBCCSSCCCCCCTTSSTTC
T ss_pred             cCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCc-cCccccCCCCEEECCCCcCCccCHHHhcCC
Confidence              0224455566666666665542  1122221  11111  2222222 1110     00          000156667


Q ss_pred             CccceecccccccccCchhHHHHHhcCCCccEEEccCCccCcccccchhhhhcCCCCCceEEecCCcCCCCcccccc
Q 038163          122 KSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSLSYYTLGINSSETLNQGLCSLVHLQELYIASNDLRGSLPWCMA  198 (207)
Q Consensus       122 ~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L~l~~n~~~~~~~i~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~  198 (207)
                      ++|+.|+++  +|.+++..+..+. .+++|+.|++++|.++   .+ |. .+..+++|+.|++++|++.+..+..+.
T Consensus       217 ~~L~~L~L~--~N~l~~~~~~~~~-~l~~L~~L~L~~N~l~---~l-p~-~l~~l~~L~~L~l~~N~l~~~~~~~~~  285 (332)
T 2ft3_A          217 SKLYRLGLG--HNQIRMIENGSLS-FLPTLRELHLDNNKLS---RV-PA-GLPDLKLLQVVYLHTNNITKVGVNDFC  285 (332)
T ss_dssp             TTCSCCBCC--SSCCCCCCTTGGG-GCTTCCEEECCSSCCC---BC-CT-TGGGCTTCCEEECCSSCCCBCCTTSSS
T ss_pred             CCCCEEECC--CCcCCcCChhHhh-CCCCCCEEECCCCcCe---ec-Ch-hhhcCccCCEEECCCCCCCccChhHcc
Confidence            777777777  7777755555666 7777888888777776   67 66 677777788888888877755444444

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.81  E-value=7.7e-20  Score=148.80  Aligned_cols=189  Identities=16%  Similarity=0.142  Sum_probs=93.5

Q ss_pred             CCCccCceecCccccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcCC
Q 038163            2 SFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDD   81 (207)
Q Consensus         2 ~~n~~~~~~p~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~~   81 (207)
                      ++|.+. .+++..|..+++|++|++++|.+  ....|..+..+++|++|++++|.++...+   ..+..+++|++|++++
T Consensus        77 ~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l--~~~~~~~~~~l~~L~~L~L~~n~l~~l~~---~~~~~l~~L~~L~L~~  150 (390)
T 3o6n_A           77 NDLQIE-EIDTYAFAYAHTIQKLYMGFNAI--RYLPPHVFQNVPLLTVLVLERNDLSSLPR---GIFHNTPKLTTLSMSN  150 (390)
T ss_dssp             TTSCCC-EECTTTTTTCTTCCEEECCSSCC--CCCCTTTTTTCTTCCEEECCSSCCCCCCT---TTTTTCTTCCEEECCS
T ss_pred             CCCccc-ccChhhccCCCCcCEEECCCCCC--CcCCHHHhcCCCCCCEEECCCCccCcCCH---HHhcCCCCCcEEECCC
Confidence            444544 23444455555555555555555  33334445555556666666555554333   2345555666666666


Q ss_pred             CCCChHHHHhhcccccc-----cCCcccceecc----cccccc-----CCC---------------------CCCCccce
Q 038163           82 SPLHISLLQSIASIFPL-----LKNLSMIGCEV----NGVIRG-----QDF---------------------PHSKSLEH  126 (207)
Q Consensus        82 ~~~~~~~~~~l~~l~~L-----~~n~~~~~~~~----~~~~~~-----~~~---------------------~~~~~L~~  126 (207)
                      |.+....+..+..+++|     ++|.+++.-..    ...+++     ..+                     ...++|+.
T Consensus       151 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~  230 (390)
T 3o6n_A          151 NNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTI  230 (390)
T ss_dssp             SCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCE
T ss_pred             CccCccChhhccCCCCCCEEECCCCcCCccccccccccceeecccccccccCCCCcceEEECCCCeeeeccccccccccE
Confidence            65553333334333333     44444332100    000000     000                     00123444


Q ss_pred             ecccccccccCchhHHHHHhcCCCccEEEccCCccCcccccchhhhhcCCCCCceEEecCCcCCCCccccccCCCCCccC
Q 038163          127 LDMEFMRIALNTSFLQIISESMSSLKYLSLSYYTLGINSSETLNQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRIL  206 (207)
Q Consensus       127 L~l~~~~n~~~~~~~~~l~~~~~~L~~L~l~~n~~~~~~~i~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l  206 (207)
                      |+++  +|.+++.  ..+. .+++|+.|++++|.+.  +.. +. .+..+++|+.|++++|++.+ +|..+..+++|+.|
T Consensus       231 L~l~--~n~l~~~--~~l~-~l~~L~~L~Ls~n~l~--~~~-~~-~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L  300 (390)
T 3o6n_A          231 LKLQ--HNNLTDT--AWLL-NYPGLVEVDLSYNELE--KIM-YH-PFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVL  300 (390)
T ss_dssp             EECC--SSCCCCC--GGGG-GCTTCSEEECCSSCCC--EEE-SG-GGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEE
T ss_pred             EECC--CCCCccc--HHHc-CCCCccEEECCCCcCC--CcC-hh-HccccccCCEEECCCCcCcc-cCcccCCCCCCCEE
Confidence            4444  4444431  2344 5666777777777766  333 44 66667777777777777664 45555566666654

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.81  E-value=3.7e-19  Score=138.21  Aligned_cols=179  Identities=20%  Similarity=0.230  Sum_probs=142.9

Q ss_pred             CCccCceecCccccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcCCC
Q 038163            3 FNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDDS   82 (207)
Q Consensus         3 ~n~~~~~~p~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~~~   82 (207)
                      ++.+...+.   ...++++++|++++|.+   ..++ .+..+++|++|++++|.+++.     ..+..+++|++|++++|
T Consensus        28 ~~~~~~~~~---~~~l~~L~~L~l~~~~i---~~~~-~l~~l~~L~~L~l~~n~l~~~-----~~l~~l~~L~~L~L~~n   95 (272)
T 3rfs_A           28 KKSVTDAVT---QNELNSIDQIIANNSDI---KSVQ-GIQYLPNVRYLALGGNKLHDI-----SALKELTNLTYLILTGN   95 (272)
T ss_dssp             CSCTTSEEC---HHHHTTCCEEECTTSCC---CCCT-TGGGCTTCCEEECTTSCCCCC-----GGGTTCTTCCEEECTTS
T ss_pred             Ccccccccc---cccccceeeeeeCCCCc---cccc-ccccCCCCcEEECCCCCCCCc-----hhhcCCCCCCEEECCCC
Confidence            344444333   46789999999999999   3333 578899999999999998863     37889999999999999


Q ss_pred             CCChHHHHhhcccccc-----cCCcccceeccccccccCCCCCCCccceecccccccccCchhHHHHHhcCCCccEEEcc
Q 038163           83 PLHISLLQSIASIFPL-----LKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSLS  157 (207)
Q Consensus        83 ~~~~~~~~~l~~l~~L-----~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L~l~  157 (207)
                      .+....+..+..+++|     .+|.+.+..+.       .+..+++|++|+++  +|.+++..+..+. .+++|+.|+++
T Consensus        96 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-------~~~~l~~L~~L~L~--~n~l~~~~~~~~~-~l~~L~~L~l~  165 (272)
T 3rfs_A           96 QLQSLPNGVFDKLTNLKELVLVENQLQSLPDG-------VFDKLTNLTYLNLA--HNQLQSLPKGVFD-KLTNLTELDLS  165 (272)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECTTSCCCCCCTT-------TTTTCTTCCEEECC--SSCCCCCCTTTTT-TCTTCCEEECC
T ss_pred             ccCccChhHhcCCcCCCEEECCCCcCCccCHH-------HhccCCCCCEEECC--CCccCccCHHHhc-cCccCCEEECC
Confidence            9885544445555555     78888875555       68899999999999  9999866666667 88999999999


Q ss_pred             CCccCcccccchhhhhcCCCCCceEEecCCcCCCCccccccCCCCCccCC
Q 038163          158 YYTLGINSSETLNQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILD  207 (207)
Q Consensus       158 ~n~~~~~~~i~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~  207 (207)
                      +|.++   .+ +...+..+++|+.|++++|.+.+..+..+..+++|+.|+
T Consensus       166 ~n~l~---~~-~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  211 (272)
T 3rfs_A          166 YNQLQ---SL-PEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIW  211 (272)
T ss_dssp             SSCCC---CC-CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred             CCCcC---cc-CHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEE
Confidence            99998   55 443678899999999999999987777788899988764

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.81  E-value=5.8e-20  Score=157.21  Aligned_cols=185  Identities=17%  Similarity=0.171  Sum_probs=114.6

Q ss_pred             CCCccCcee-cCccccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcC
Q 038163            2 SFNEINNLV-VPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLD   80 (207)
Q Consensus         2 ~~n~~~~~~-p~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~   80 (207)
                      ++|.+.+.. .+..+..+++|++|++++|.+   ..+|..+..+++|+.|++++|.+.+..|.  ..+..+++|++|+++
T Consensus       358 s~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l---~~~~~~~~~l~~L~~L~l~~n~l~~~~~~--~~~~~l~~L~~L~l~  432 (606)
T 3vq2_A          358 SRNALSFSGCCSYSDLGTNSLRHLDLSFNGA---IIMSANFMGLEELQHLDFQHSTLKRVTEF--SAFLSLEKLLYLDIS  432 (606)
T ss_dssp             CSSCEEEEEECCHHHHCCSCCCEEECCSCSE---EEECCCCTTCTTCCEEECTTSEEESTTTT--TTTTTCTTCCEEECT
T ss_pred             cCCccCCCcchhhhhccCCcccEeECCCCcc---ccchhhccCCCCCCeeECCCCccCCccCh--hhhhccccCCEEECc
Confidence            445555431 023345666666666666666   33455566666666666666666654431  245566777777777


Q ss_pred             CCCCChHHHHhhcccccc-----cCCcccc-eeccccccccCCCCCCCccceecccccccccCchhHHHHHhcCCCccEE
Q 038163           81 DSPLHISLLQSIASIFPL-----LKNLSMI-GCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYL  154 (207)
Q Consensus        81 ~~~~~~~~~~~l~~l~~L-----~~n~~~~-~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L  154 (207)
                      +|.+.+..+..+..+++|     ++|.+.+ ..|.       .+..+++|+.|+++  +|.+++..+..+. .+++|+.|
T Consensus       433 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-------~~~~l~~L~~L~Ls--~n~l~~~~~~~~~-~l~~L~~L  502 (606)
T 3vq2_A          433 YTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSN-------VFANTTNLTFLDLS--KCQLEQISWGVFD-TLHRLQLL  502 (606)
T ss_dssp             TSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECS-------CCTTCTTCCEEECT--TSCCCEECTTTTT-TCTTCCEE
T ss_pred             CCCCCccchhhhcCCCCCCEEECCCCcCCCcchHH-------hhccCCCCCEEECC--CCcCCccChhhhc-ccccCCEE
Confidence            777665555555544444     6666665 3455       66777777777777  7777766666666 67777777


Q ss_pred             EccCCccCcccccchhhhhcCCCCCceEEecCCcCCCCccccccCCC-CCccC
Q 038163          155 SLSYYTLGINSSETLNQGLCSLVHLQELYIASNDLRGSLPWCMANMT-SLRIL  206 (207)
Q Consensus       155 ~l~~n~~~~~~~i~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~-~L~~l  206 (207)
                      ++++|.++  +.+ |. .+..+++|+.|++++|++. .+|..+..++ +|+.+
T Consensus       503 ~Ls~N~l~--~~~-~~-~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l  550 (606)
T 3vq2_A          503 NMSHNNLL--FLD-SS-HYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFF  550 (606)
T ss_dssp             ECCSSCCS--CEE-GG-GTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEE
T ss_pred             ECCCCcCC--CcC-HH-HccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEE
Confidence            77777776  444 54 6777777777777777776 4565566665 36554

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.81  E-value=3.7e-19  Score=141.83  Aligned_cols=188  Identities=13%  Similarity=0.164  Sum_probs=128.0

Q ss_pred             CCCCccCceecCccccCCCCCcEEecCCCcccC-------------------CCcchhhhcCCCCCCEEEcCCCcCCc--
Q 038163            1 MSFNEINNLVVPQGYNGLRKLKSLDLSGVGVRD-------------------GSKLLQSIGSFSSLNSLYLSSNNFTE--   59 (207)
Q Consensus         1 l~~n~~~~~~p~~~~~~l~~L~~L~ls~n~i~~-------------------~~~~~~~~~~l~~L~~L~l~~n~~~~--   59 (207)
                      |++|.+.+ +++..|.++++|++|++++|.+..                   ....+..+..+++|++|++++|.++.  
T Consensus        85 L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~  163 (332)
T 2ft3_A           85 LVNNKISK-IHEKAFSPLRKLQKLYISKNHLVEIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSG  163 (332)
T ss_dssp             CCSSCCCE-ECGGGSTTCTTCCEEECCSSCCCSCCSSCCTTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGG
T ss_pred             CCCCccCc-cCHhHhhCcCCCCEEECCCCcCCccCccccccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCC
Confidence            35666664 333556777777777777776521                   11122346778888888888888753  


Q ss_pred             ccccchhcccCC--------------------CCccEEEcCCCCCChHHHHhhcccccc-----cCCcccceeccccccc
Q 038163           60 TVTITTQELHNF--------------------TNMEYLKLDDSPLHISLLQSIASIFPL-----LKNLSMIGCEVNGVIR  114 (207)
Q Consensus        60 ~~~~~~~~l~~l--------------------~~L~~L~l~~~~~~~~~~~~l~~l~~L-----~~n~~~~~~~~~~~~~  114 (207)
                      ..+   ..+..+                    ++|++|++++|.+....+..+..+++|     ++|.+.+..+.     
T Consensus       164 ~~~---~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~-----  235 (332)
T 2ft3_A          164 FEP---GAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENG-----  235 (332)
T ss_dssp             SCT---TSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTT-----
T ss_pred             CCc---ccccCCccCEEECcCCCCCccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChh-----
Confidence            333   233333                    356666666666554433444444444     66777665554     


Q ss_pred             cCCCCCCCccceecccccccccCchhHHHHHhcCCCccEEEccCCccCcccccchhhhhcC------CCCCceEEecCCc
Q 038163          115 GQDFPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSLSYYTLGINSSETLNQGLCS------LVHLQELYIASND  188 (207)
Q Consensus       115 ~~~~~~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L~l~~n~~~~~~~i~~~~~~~~------~~~L~~L~l~~n~  188 (207)
                        .+..+++|+.|+++  +|.++ .+|..+. .+++|+.|++++|.++   .+ +...+..      ..+++.+++++|+
T Consensus       236 --~~~~l~~L~~L~L~--~N~l~-~lp~~l~-~l~~L~~L~l~~N~l~---~~-~~~~~~~~~~~~~~~~l~~L~l~~N~  305 (332)
T 2ft3_A          236 --SLSFLPTLRELHLD--NNKLS-RVPAGLP-DLKLLQVVYLHTNNIT---KV-GVNDFCPVGFGVKRAYYNGISLFNNP  305 (332)
T ss_dssp             --GGGGCTTCCEEECC--SSCCC-BCCTTGG-GCTTCCEEECCSSCCC---BC-CTTSSSCSSCCSSSCCBSEEECCSSS
T ss_pred             --HhhCCCCCCEEECC--CCcCe-ecChhhh-cCccCCEEECCCCCCC---cc-ChhHccccccccccccccceEeecCc
Confidence              67889999999999  99998 6777788 8999999999999998   55 4324543      4678999999999


Q ss_pred             CC--CCccccccCCCCCccCC
Q 038163          189 LR--GSLPWCMANMTSLRILD  207 (207)
Q Consensus       189 l~--~~~p~~~~~l~~L~~l~  207 (207)
                      +.  +..|..|..+++|+.++
T Consensus       306 ~~~~~~~~~~~~~l~~L~~l~  326 (332)
T 2ft3_A          306 VPYWEVQPATFRCVTDRLAIQ  326 (332)
T ss_dssp             SCGGGSCGGGGTTBCCSTTEE
T ss_pred             ccccccCcccccccchhhhhh
Confidence            87  55678888899888763

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.81  E-value=1.1e-19  Score=155.72  Aligned_cols=189  Identities=15%  Similarity=0.131  Sum_probs=99.0

Q ss_pred             CCCccCceecCccccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcCC
Q 038163            2 SFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDD   81 (207)
Q Consensus         2 ~~n~~~~~~p~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~~   81 (207)
                      ++|.+.+ +|+..|..+++|++|++++|.+  ....|..|+.+++|++|++++|.++...+   ..+..+++|++|++++
T Consensus        83 ~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l--~~~~~~~~~~l~~L~~L~L~~n~l~~l~~---~~~~~l~~L~~L~Ls~  156 (597)
T 3oja_B           83 NDLQIEE-IDTYAFAYAHTIQKLYMGFNAI--RYLPPHVFQNVPLLTVLVLERNDLSSLPR---GIFHNTPKLTTLSMSN  156 (597)
T ss_dssp             TTSCCCE-ECTTTTTTCTTCCEEECCSSCC--CCCCTTTTTTCTTCCEEECCSSCCCCCCT---TTTTTCTTCCEEECCS
T ss_pred             CCCCCCC-CChHHhcCCCCCCEEECCCCcC--CCCCHHHHcCCCCCCEEEeeCCCCCCCCH---HHhccCCCCCEEEeeC
Confidence            4455553 3334455666666666666665  33344445556666666666666554433   3345566666666666


Q ss_pred             CCCChHHHHhhcccccc-----cCCcccceecc----cccccc-----CCCC---------------------CCCccce
Q 038163           82 SPLHISLLQSIASIFPL-----LKNLSMIGCEV----NGVIRG-----QDFP---------------------HSKSLEH  126 (207)
Q Consensus        82 ~~~~~~~~~~l~~l~~L-----~~n~~~~~~~~----~~~~~~-----~~~~---------------------~~~~L~~  126 (207)
                      |.+.+..+..+..+++|     ++|.+.+.-..    ...+++     ..+.                     ...+|+.
T Consensus       157 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~  236 (597)
T 3oja_B          157 NNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTI  236 (597)
T ss_dssp             SCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCE
T ss_pred             CcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccCCCCCE
Confidence            66554444444444443     44444432100    000000     0000                     0123444


Q ss_pred             ecccccccccCchhHHHHHhcCCCccEEEccCCccCcccccchhhhhcCCCCCceEEecCCcCCCCccccccCCCCCccC
Q 038163          127 LDMEFMRIALNTSFLQIISESMSSLKYLSLSYYTLGINSSETLNQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRIL  206 (207)
Q Consensus       127 L~l~~~~n~~~~~~~~~l~~~~~~L~~L~l~~n~~~~~~~i~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l  206 (207)
                      |+++  +|.+++  +..+. .+++|+.|++++|.+.  +.. |. .+..+++|+.|++++|.+.+ +|..+..+++|+.|
T Consensus       237 L~L~--~n~l~~--~~~l~-~l~~L~~L~Ls~N~l~--~~~-~~-~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L  306 (597)
T 3oja_B          237 LKLQ--HNNLTD--TAWLL-NYPGLVEVDLSYNELE--KIM-YH-PFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVL  306 (597)
T ss_dssp             EECC--SSCCCC--CGGGG-GCTTCSEEECCSSCCC--EEE-SG-GGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEE
T ss_pred             EECC--CCCCCC--Chhhc-cCCCCCEEECCCCccC--CCC-HH-HhcCccCCCEEECCCCCCCC-CCcccccCCCCcEE
Confidence            4455  444443  23445 6677777777777776  444 54 67777777777777777764 45555666676655

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.80  E-value=6.3e-20  Score=162.50  Aligned_cols=162  Identities=13%  Similarity=0.145  Sum_probs=136.7

Q ss_pred             eecCcccc--CCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCc-CCc-ccccchhccc-------CCCCccEE
Q 038163            9 LVVPQGYN--GLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNN-FTE-TVTITTQELH-------NFTNMEYL   77 (207)
Q Consensus         9 ~~p~~~~~--~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~-~~~-~~~~~~~~l~-------~l~~L~~L   77 (207)
                      .+|+. ++  ++++|++|++++|.+  .+.+|..+..+++|++|++++|. +++ .+|   ..+.       .+++|++|
T Consensus       480 ~iP~~-l~f~~L~~L~~L~Ls~N~l--~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP---~~i~~L~~~~~~l~~L~~L  553 (876)
T 4ecn_A          480 YENEE-LSWSNLKDLTDVELYNCPN--MTQLPDFLYDLPELQSLNIACNRGISAAQLK---ADWTRLADDEDTGPKIQIF  553 (876)
T ss_dssp             HTTSC-CCGGGCTTCCEEEEESCTT--CCSCCGGGGGCSSCCEEECTTCTTSCHHHHH---HHHHHHHHCTTTTTTCCEE
T ss_pred             cCChh-hhhccCCCCCEEECcCCCC--CccChHHHhCCCCCCEEECcCCCCcccccch---HHHHhhhhcccccCCccEE
Confidence            48866 46  999999999999998  68899999999999999999998 887 777   4443       45599999


Q ss_pred             EcCCCCCChHHHH--hhcccccc-----cCCcccceeccccccccCCCCCCCccceecccccccccCchhHHHHHhcCCC
Q 038163           78 KLDDSPLHISLLQ--SIASIFPL-----LKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFLQIISESMSS  150 (207)
Q Consensus        78 ~l~~~~~~~~~~~--~l~~l~~L-----~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~~  150 (207)
                      ++++|.+. .++.  .+..+++|     ++|.+. .+|        .+..+++|+.|+++  +|.++ .+|..+. .+++
T Consensus       554 ~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp--------~~~~L~~L~~L~Ls--~N~l~-~lp~~l~-~l~~  619 (876)
T 4ecn_A          554 YMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE--------AFGTNVKLTDLKLD--YNQIE-EIPEDFC-AFTD  619 (876)
T ss_dssp             ECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC--------CCCTTSEESEEECC--SSCCS-CCCTTSC-EECT
T ss_pred             EeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch--------hhcCCCcceEEECc--CCccc-cchHHHh-hccc
Confidence            99999998 6666  67776666     778877 455        67889999999999  99998 7787787 8888


Q ss_pred             -ccEEEccCCccCcccccchhhhhcCCC--CCceEEecCCcCCCCccc
Q 038163          151 -LKYLSLSYYTLGINSSETLNQGLCSLV--HLQELYIASNDLRGSLPW  195 (207)
Q Consensus       151 -L~~L~l~~n~~~~~~~i~~~~~~~~~~--~L~~L~l~~n~l~~~~p~  195 (207)
                       |+.|++++|.+.   .+ |. .+....  +|+.|++++|++.+.+|.
T Consensus       620 ~L~~L~Ls~N~L~---~l-p~-~~~~~~~~~L~~L~Ls~N~l~g~ip~  662 (876)
T 4ecn_A          620 QVEGLGFSHNKLK---YI-PN-IFNAKSVYVMGSVDFSYNKIGSEGRN  662 (876)
T ss_dssp             TCCEEECCSSCCC---SC-CS-CCCTTCSSCEEEEECCSSCTTTTSSS
T ss_pred             cCCEEECcCCCCC---cC-ch-hhhccccCCCCEEECcCCcCCCcccc
Confidence             999999999998   88 76 776664  499999999999987664

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.80  E-value=8.3e-19  Score=134.66  Aligned_cols=146  Identities=15%  Similarity=0.143  Sum_probs=122.3

Q ss_pred             CCCCccCceecCccccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcC
Q 038163            1 MSFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLD   80 (207)
Q Consensus         1 l~~n~~~~~~p~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~   80 (207)
                      |++|.+.+ +++..|.++++|++|++++|.+  ....+..+..+++|++|++++|.++...+   ..+..+++|++|+++
T Consensus        42 L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l--~~~~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~L~  115 (251)
T 3m19_A           42 LQSTGLAT-LSDATFRGLTKLTWLNLDYNQL--QTLSAGVFDDLTELGTLGLANNQLASLPL---GVFDHLTQLDKLYLG  115 (251)
T ss_dssp             CTTSCCCC-CCTTTTTTCTTCCEEECTTSCC--CCCCTTTTTTCTTCCEEECTTSCCCCCCT---TTTTTCTTCCEEECC
T ss_pred             ccCCCcCc-cCHhHhcCcccCCEEECCCCcC--CccCHhHhccCCcCCEEECCCCcccccCh---hHhcccCCCCEEEcC
Confidence            57888886 5556789999999999999999  56666778999999999999999998777   678899999999999


Q ss_pred             CCCCChHHHHhhcccccc-----cCCcccceeccccccccCCCCCCCccceecccccccccCchhHHHHHhcCCCccEEE
Q 038163           81 DSPLHISLLQSIASIFPL-----LKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLS  155 (207)
Q Consensus        81 ~~~~~~~~~~~l~~l~~L-----~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L~  155 (207)
                      +|.+....+..+..+++|     ++|.+.+..+.       .+..+++|++|+++  +|.+++..+..+. .+++|+.|+
T Consensus       116 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-------~~~~l~~L~~L~L~--~N~l~~~~~~~~~-~l~~L~~L~  185 (251)
T 3m19_A          116 GNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAG-------AFDKLTNLQTLSLS--TNQLQSVPHGAFD-RLGKLQTIT  185 (251)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT-------TTTTCTTCCEEECC--SSCCSCCCTTTTT-TCTTCCEEE
T ss_pred             CCcCCCcChhHhccCCcccEEECcCCcCCccCHH-------HcCcCcCCCEEECC--CCcCCccCHHHHh-CCCCCCEEE
Confidence            999885444444445544     88888875555       78899999999999  9999866666777 899999999


Q ss_pred             ccCCccC
Q 038163          156 LSYYTLG  162 (207)
Q Consensus       156 l~~n~~~  162 (207)
                      +++|.+.
T Consensus       186 l~~N~~~  192 (251)
T 3m19_A          186 LFGNQFD  192 (251)
T ss_dssp             CCSCCBC
T ss_pred             eeCCcee
Confidence            9999997

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.80  E-value=5.7e-20  Score=153.94  Aligned_cols=184  Identities=18%  Similarity=0.093  Sum_probs=125.6

Q ss_pred             CCCCccCceecCccccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccc-h------------hc
Q 038163            1 MSFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTIT-T------------QE   67 (207)
Q Consensus         1 l~~n~~~~~~p~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~-~------------~~   67 (207)
                      |++|.+.+ +++..|..+++|++|++++|.+  ....|  +..+++|++|++++|.+++..+.. +            ..
T Consensus        41 Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~N~l--~~~~~--l~~l~~L~~L~Ls~N~l~~l~~~~~L~~L~L~~N~l~~~~  115 (487)
T 3oja_A           41 LSGNPLSQ-ISAADLAPFTKLELLNLSSNVL--YETLD--LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVS  115 (487)
T ss_dssp             CCSSCCCC-CCGGGGTTCTTCCEEECTTSCC--EEEEE--CTTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCCCEE
T ss_pred             eeCCcCCC-CCHHHHhCCCCCCEEEeeCCCC--CCCcc--cccCCCCCEEEecCCcCCCCCCCCCcCEEECcCCcCCCCC
Confidence            57788886 5556689999999999999998  33333  788888888888888776543200 0            00


Q ss_pred             ccCCCCccEEEcCCCCCChHHHHhhcccccc-----cCCcccceeccccccccCCCC-CCCccceecccccccccCchhH
Q 038163           68 LHNFTNMEYLKLDDSPLHISLLQSIASIFPL-----LKNLSMIGCEVNGVIRGQDFP-HSKSLEHLDMEFMRIALNTSFL  141 (207)
Q Consensus        68 l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L-----~~n~~~~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~n~~~~~~~  141 (207)
                      ...+++|++|++++|.+.+..+..+..+++|     ++|.+++..|.       .+. .+++|+.|+++  +|.+++. +
T Consensus       116 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-------~l~~~l~~L~~L~Ls--~N~l~~~-~  185 (487)
T 3oja_A          116 CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFA-------ELAASSDTLEHLNLQ--YNFIYDV-K  185 (487)
T ss_dssp             ECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGG-------GGGGGTTTCCEEECT--TSCCCEE-E
T ss_pred             ccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChH-------HHhhhCCcccEEecC--CCccccc-c
Confidence            1234566777777777665545444444444     66777665555       554 56778888888  7777643 2


Q ss_pred             HHHHhcCCCccEEEccCCccCcccccchhhhhcCCCCCceEEecCCcCCCCccccccCCCCCccCC
Q 038163          142 QIISESMSSLKYLSLSYYTLGINSSETLNQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILD  207 (207)
Q Consensus       142 ~~l~~~~~~L~~L~l~~n~~~~~~~i~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~  207 (207)
                       ... .+++|+.|++++|.++   .+ |. .+..+++|+.|++++|.+.+ +|..+..+++|+.++
T Consensus       186 -~~~-~l~~L~~L~Ls~N~l~---~~-~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~  243 (487)
T 3oja_A          186 -GQV-VFAKLKTLDLSSNKLA---FM-GP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFD  243 (487)
T ss_dssp             -CCC-CCTTCCEEECCSSCCC---EE-CG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEE
T ss_pred             -ccc-cCCCCCEEECCCCCCC---CC-CH-hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEE
Confidence             122 4677888888888887   56 55 67788888888888888884 677777777777653

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.80  E-value=3e-19  Score=142.26  Aligned_cols=186  Identities=16%  Similarity=0.167  Sum_probs=143.9

Q ss_pred             CCCCccCceecCccccCCCCCcEEecCCCcccCCCc-chhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEc
Q 038163            1 MSFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSK-LLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKL   79 (207)
Q Consensus         1 l~~n~~~~~~p~~~~~~l~~L~~L~ls~n~i~~~~~-~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l   79 (207)
                      +++|.+.+..+ . +..+++|++|++++|.+  ... ++..+..+++|++|++++|.+++..+   ..+..+++|++|++
T Consensus        77 l~~n~l~~~~~-~-~~~~~~L~~L~L~~~~l--~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~---~~l~~~~~L~~L~L  149 (336)
T 2ast_B           77 CPRSFMDQPLA-E-HFSPFRVQHMDLSNSVI--EVSTLHGILSQCSKLQNLSLEGLRLSDPIV---NTLAKNSNLVRLNL  149 (336)
T ss_dssp             CTTCEECSCCC-S-CCCCBCCCEEECTTCEE--CHHHHHHHHTTBCCCSEEECTTCBCCHHHH---HHHTTCTTCSEEEC
T ss_pred             cCCccccccch-h-hccCCCCCEEEccCCCc--CHHHHHHHHhhCCCCCEEeCcCcccCHHHH---HHHhcCCCCCEEEC
Confidence            45677776554 4 46799999999999999  444 88889999999999999999998777   78888999999999


Q ss_pred             CCC-CCChH-HHHhhcccccc-----cCC-cccce-eccccccccCCCCCCC-ccceeccccccc--ccC-chhHHHHHh
Q 038163           80 DDS-PLHIS-LLQSIASIFPL-----LKN-LSMIG-CEVNGVIRGQDFPHSK-SLEHLDMEFMRI--ALN-TSFLQIISE  146 (207)
Q Consensus        80 ~~~-~~~~~-~~~~l~~l~~L-----~~n-~~~~~-~~~~~~~~~~~~~~~~-~L~~L~l~~~~n--~~~-~~~~~~l~~  146 (207)
                      ++| .+++. .+..+..+++|     ++| .+++. ++.       .+..++ +|++|+++  +|  .++ ..++..+. 
T Consensus       150 ~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~-------~~~~l~~~L~~L~l~--~~~~~~~~~~l~~~~~-  219 (336)
T 2ast_B          150 SGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQV-------AVAHVSETITQLNLS--GYRKNLQKSDLSTLVR-  219 (336)
T ss_dssp             TTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHH-------HHHHSCTTCCEEECC--SCGGGSCHHHHHHHHH-
T ss_pred             CCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHH-------HHHhcccCCCEEEeC--CCcccCCHHHHHHHHh-
Confidence            999 68764 44445555554     667 66653 344       567788 99999999  88  565 45567777 


Q ss_pred             cCCCccEEEccCCc-cCcccccchhhhhcCCCCCceEEecCCc-CCCCccccccCCCCCccCC
Q 038163          147 SMSSLKYLSLSYYT-LGINSSETLNQGLCSLVHLQELYIASND-LRGSLPWCMANMTSLRILD  207 (207)
Q Consensus       147 ~~~~L~~L~l~~n~-~~~~~~i~~~~~~~~~~~L~~L~l~~n~-l~~~~p~~~~~l~~L~~l~  207 (207)
                      .+++|+.|++++|. ++  +.. +. .+..+++|+.|++++|. +.......+..+++|+.|+
T Consensus       220 ~~~~L~~L~l~~~~~l~--~~~-~~-~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~  278 (336)
T 2ast_B          220 RCPNLVHLDLSDSVMLK--NDC-FQ-EFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQ  278 (336)
T ss_dssp             HCTTCSEEECTTCTTCC--GGG-GG-GGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEE
T ss_pred             hCCCCCEEeCCCCCcCC--HHH-HH-HHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEe
Confidence            89999999999999 65  455 55 78889999999999996 3322223577888888764

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.80  E-value=3.7e-19  Score=154.15  Aligned_cols=184  Identities=20%  Similarity=0.212  Sum_probs=96.9

Q ss_pred             CCCccCceecCccccCCCCCcEEecCCCcccCCCcch-hhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcC
Q 038163            2 SFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLL-QSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLD   80 (207)
Q Consensus         2 ~~n~~~~~~p~~~~~~l~~L~~L~ls~n~i~~~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~   80 (207)
                      ++|.+.+. ++.+|..+++|++|++++|.+  ...++ ..+..+++|++|++++|.+....+   ..+..++.|++|+++
T Consensus       389 ~~n~l~~~-~~~~~~~l~~L~~L~L~~N~l--~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~---~~~~~~~~L~~L~l~  462 (680)
T 1ziw_A          389 TKNKISKI-ESDAFSWLGHLEVLDLGLNEI--GQELTGQEWRGLENIFEIYLSYNKYLQLTR---NSFALVPSLQRLMLR  462 (680)
T ss_dssp             TTSCCCEE-CTTTTTTCTTCCEEECCSSCC--EEECCSGGGTTCTTCCEEECCSCSEEECCT---TTTTTCTTCCEEECT
T ss_pred             CCCCCCeE-ChhhhhCCCCCCEEeCCCCcC--ccccCcccccCcccccEEecCCCCcceeCh---hhhhcCcccccchhc
Confidence            55666643 345577788888888888877  34444 466777777777777777665544   455555556666665


Q ss_pred             CCCCC--hHHHHhhcccccc-----cCCcccceeccccccccCCCCCCCccceecccccccccCchhHH--------HHH
Q 038163           81 DSPLH--ISLLQSIASIFPL-----LKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFLQ--------IIS  145 (207)
Q Consensus        81 ~~~~~--~~~~~~l~~l~~L-----~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~~~~--------~l~  145 (207)
                      +|.+.  +..+..+..+++|     ++|.+++..+.       .+..+++|+.|+++  +|.+++....        .+.
T Consensus       463 ~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~-------~~~~l~~L~~L~Ls--~N~l~~~~~~~~~~~~~~~~~  533 (680)
T 1ziw_A          463 RVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDD-------MLEGLEKLEILDLQ--HNNLARLWKHANPGGPIYFLK  533 (680)
T ss_dssp             TSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTT-------TTTTCTTCCEEECC--SSCCGGGGSTTSTTSCCCTTT
T ss_pred             cccccccccCCcccccCCCCCEEECCCCCCCcCChh-------hhccccccCEEeCC--CCCccccchhhccCCcchhhc
Confidence            55543  1223333333333     44555443333       44555555555555  5554422110        123


Q ss_pred             hcCCCccEEEccCCccCcccccchhhhhcCCCCCceEEecCCcCCCCccccccCCCCCcc
Q 038163          146 ESMSSLKYLSLSYYTLGINSSETLNQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRI  205 (207)
Q Consensus       146 ~~~~~L~~L~l~~n~~~~~~~i~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~  205 (207)
                       .+++|+.|++++|.++   .+ |...+..+++|+.|++++|++.+..+..|..+++|+.
T Consensus       534 -~l~~L~~L~L~~N~l~---~i-~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~  588 (680)
T 1ziw_A          534 -GLSHLHILNLESNGFD---EI-PVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKS  588 (680)
T ss_dssp             -TCTTCCEEECCSSCCC---CC-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             -CCCCCCEEECCCCCCC---CC-CHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCE
Confidence             4445555555555554   44 3323445555555555555555433344444444443

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.80  E-value=1.7e-19  Score=156.34  Aligned_cols=194  Identities=16%  Similarity=0.122  Sum_probs=126.3

Q ss_pred             CCCCccCceecCccccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCC--cccccchhcccCCCCccEEE
Q 038163            1 MSFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFT--ETVTITTQELHNFTNMEYLK   78 (207)
Q Consensus         1 l~~n~~~~~~p~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~--~~~~~~~~~l~~l~~L~~L~   78 (207)
                      |++|.+.+.+|+..+.++++|++|++++|.+  ....+..+..++.|+.|++++|.+.  +..|   ..+..+++|++|+
T Consensus       412 L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l--~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p---~~~~~l~~L~~L~  486 (680)
T 1ziw_A          412 LGLNEIGQELTGQEWRGLENIFEIYLSYNKY--LQLTRNSFALVPSLQRLMLRRVALKNVDSSP---SPFQPLRNLTILD  486 (680)
T ss_dssp             CCSSCCEEECCSGGGTTCTTCCEEECCSCSE--EECCTTTTTTCTTCCEEECTTSCCBCTTCSS---CTTTTCTTCCEEE
T ss_pred             CCCCcCccccCcccccCcccccEEecCCCCc--ceeChhhhhcCcccccchhccccccccccCC---cccccCCCCCEEE
Confidence            5788888888888889999999999999998  4555667777778888888777765  3455   5667777788888


Q ss_pred             cCCCCCChHHHHhhcccccc-----cCCcccceeccc-cccccCCCCCCCccceecccccccccCchhHHHHHhcCCCcc
Q 038163           79 LDDSPLHISLLQSIASIFPL-----LKNLSMIGCEVN-GVIRGQDFPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLK  152 (207)
Q Consensus        79 l~~~~~~~~~~~~l~~l~~L-----~~n~~~~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~  152 (207)
                      +++|.++...+..+..+++|     ++|.+++..+.. .......+..+++|+.|+++  +|.++...+..+. .+++|+
T Consensus       487 Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~--~N~l~~i~~~~~~-~l~~L~  563 (680)
T 1ziw_A          487 LSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLE--SNGFDEIPVEVFK-DLFELK  563 (680)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECC--SSCCCCCCTTTTT-TCTTCC
T ss_pred             CCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECC--CCCCCCCCHHHcc-cccCcc
Confidence            87777764434444444444     666665431110 00000035667777777777  7777633333455 677777


Q ss_pred             EEEccCCccCcccccchhhhhcCCCCCceEEecCCcCCCCcccccc-CCCCCccC
Q 038163          153 YLSLSYYTLGINSSETLNQGLCSLVHLQELYIASNDLRGSLPWCMA-NMTSLRIL  206 (207)
Q Consensus       153 ~L~l~~n~~~~~~~i~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~-~l~~L~~l  206 (207)
                      .|++++|.++   .+ +...+..+++|+.|++++|++.+..+..+. .+++|+.+
T Consensus       564 ~L~Ls~N~l~---~l-~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l  614 (680)
T 1ziw_A          564 IIDLGLNNLN---TL-PASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTEL  614 (680)
T ss_dssp             EEECCSSCCC---CC-CTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEE
T ss_pred             eeECCCCCCC---cC-CHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEE
Confidence            7777777776   55 443566777777777777777765555554 45555543

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.80  E-value=7.7e-20  Score=139.37  Aligned_cols=182  Identities=11%  Similarity=0.059  Sum_probs=138.1

Q ss_pred             CCCCccCceecCccccCCCCCcEEecCCCc-ccCCCcchhhhcCCCCCCEEEcCC-CcCCcccccchhcccCCCCccEEE
Q 038163            1 MSFNEINNLVVPQGYNGLRKLKSLDLSGVG-VRDGSKLLQSIGSFSSLNSLYLSS-NNFTETVTITTQELHNFTNMEYLK   78 (207)
Q Consensus         1 l~~n~~~~~~p~~~~~~l~~L~~L~ls~n~-i~~~~~~~~~~~~l~~L~~L~l~~-n~~~~~~~~~~~~l~~l~~L~~L~   78 (207)
                      |++|.+. .+|+..|..+++|++|++++|. +  ....+..|..+++|++|++++ |.++...+   ..+..+++|++|+
T Consensus        38 l~~n~l~-~i~~~~~~~l~~L~~L~l~~n~~l--~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~---~~f~~l~~L~~L~  111 (239)
T 2xwt_C           38 LIETHLR-TIPSHAFSNLPNISRIYVSIDVTL--QQLESHSFYNLSKVTHIEIRNTRNLTYIDP---DALKELPLLKFLG  111 (239)
T ss_dssp             EESCCCS-EECTTTTTTCTTCCEEEEECCSSC--CEECTTTEESCTTCCEEEEEEETTCCEECT---TSEECCTTCCEEE
T ss_pred             EeCCcce-EECHHHccCCCCCcEEeCCCCCCc--ceeCHhHcCCCcCCcEEECCCCCCeeEcCH---HHhCCCCCCCEEe
Confidence            3577887 5777778999999999999997 7  333344788999999999998 89987766   6788899999999


Q ss_pred             cCCCCCChHHHH--hhcccc---cc--cCC-cccceeccccccccCCCCCCCccc-eecccccccccCchhHHHHHhcCC
Q 038163           79 LDDSPLHISLLQ--SIASIF---PL--LKN-LSMIGCEVNGVIRGQDFPHSKSLE-HLDMEFMRIALNTSFLQIISESMS  149 (207)
Q Consensus        79 l~~~~~~~~~~~--~l~~l~---~L--~~n-~~~~~~~~~~~~~~~~~~~~~~L~-~L~l~~~~n~~~~~~~~~l~~~~~  149 (207)
                      +++|.+.+ .+.  .+..++   .|  ++| .+.+..+.       .+..+++|+ .|+++  +|.++ .++.... ..+
T Consensus       112 l~~n~l~~-lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~-------~~~~l~~L~~~L~l~--~n~l~-~i~~~~~-~~~  179 (239)
T 2xwt_C          112 IFNTGLKM-FPDLTKVYSTDIFFILEITDNPYMTSIPVN-------AFQGLCNETLTLKLY--NNGFT-SVQGYAF-NGT  179 (239)
T ss_dssp             EEEECCCS-CCCCTTCCBCCSEEEEEEESCTTCCEECTT-------TTTTTBSSEEEEECC--SCCCC-EECTTTT-TTC
T ss_pred             CCCCCCcc-ccccccccccccccEEECCCCcchhhcCcc-------cccchhcceeEEEcC--CCCCc-ccCHhhc-CCC
Confidence            99998874 332  223333   33  666 66654444       688999999 99999  99998 4554433 347


Q ss_pred             CccEEEccCCc-cCcccccchhhhhcCC-CCCceEEecCCcCCCCccccccCCCCCc
Q 038163          150 SLKYLSLSYYT-LGINSSETLNQGLCSL-VHLQELYIASNDLRGSLPWCMANMTSLR  204 (207)
Q Consensus       150 ~L~~L~l~~n~-~~~~~~i~~~~~~~~~-~~L~~L~l~~n~l~~~~p~~~~~l~~L~  204 (207)
                      +|+.|++++|. ++   .+ +...+..+ ++|+.|++++|++.+..+..+..++.|.
T Consensus       180 ~L~~L~L~~n~~l~---~i-~~~~~~~l~~~L~~L~l~~N~l~~l~~~~~~~L~~L~  232 (239)
T 2xwt_C          180 KLDAVYLNKNKYLT---VI-DKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELI  232 (239)
T ss_dssp             EEEEEECTTCTTCC---EE-CTTTTTTCSBCCSEEECTTCCCCCCCCTTCTTCSEEE
T ss_pred             CCCEEEcCCCCCcc---cC-CHHHhhccccCCcEEECCCCccccCChhHhccCceee
Confidence            89999999995 87   66 54478888 9999999999999865445555555543

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.79  E-value=7.7e-20  Score=156.42  Aligned_cols=175  Identities=22%  Similarity=0.161  Sum_probs=139.5

Q ss_pred             ccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcCCCCCChHHH-Hhhc
Q 038163           15 YNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDDSPLHISLL-QSIA   93 (207)
Q Consensus        15 ~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~l~   93 (207)
                      +..+++|++|++++|.++.....+..+..+++|++|++++|.++. .|   ..+..+++|++|++++|.+.+..+ ..+.
T Consensus       346 ~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~---~~~~~l~~L~~L~l~~n~l~~~~~~~~~~  421 (606)
T 3vq2_A          346 KVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MS---ANFMGLEELQHLDFQHSTLKRVTEFSAFL  421 (606)
T ss_dssp             CCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-EC---CCCTTCTTCCEEECTTSEEESTTTTTTTT
T ss_pred             hccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-ch---hhccCCCCCCeeECCCCccCCccChhhhh
Confidence            467778888888888873222236778888888888888888775 44   477888899999999988775544 3455


Q ss_pred             ccccc-----cCCcccceeccccccccCCCCCCCccceecccccccccCch-hHHHHHhcCCCccEEEccCCccCccccc
Q 038163           94 SIFPL-----LKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTS-FLQIISESMSSLKYLSLSYYTLGINSSE  167 (207)
Q Consensus        94 ~l~~L-----~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~-~~~~l~~~~~~L~~L~l~~n~~~~~~~i  167 (207)
                      .+++|     ++|.+.+..|.       .+..+++|+.|+++  +|.+++. .+..+. .+++|+.|++++|.++  +..
T Consensus       422 ~l~~L~~L~l~~n~l~~~~~~-------~~~~l~~L~~L~l~--~n~l~~~~~~~~~~-~l~~L~~L~Ls~n~l~--~~~  489 (606)
T 3vq2_A          422 SLEKLLYLDISYTNTKIDFDG-------IFLGLTSLNTLKMA--GNSFKDNTLSNVFA-NTTNLTFLDLSKCQLE--QIS  489 (606)
T ss_dssp             TCTTCCEEECTTSCCEECCTT-------TTTTCTTCCEEECT--TCEEGGGEECSCCT-TCTTCCEEECTTSCCC--EEC
T ss_pred             ccccCCEEECcCCCCCccchh-------hhcCCCCCCEEECC--CCcCCCcchHHhhc-cCCCCCEEECCCCcCC--ccC
Confidence            55554     77888777776       88899999999999  9999864 566777 8899999999999998  444


Q ss_pred             chhhhhcCCCCCceEEecCCcCCCCccccccCCCCCccCC
Q 038163          168 TLNQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILD  207 (207)
Q Consensus       168 ~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~  207 (207)
                       |. .+..+++|+.|++++|++.+..|..+..+++|+.||
T Consensus       490 -~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  527 (606)
T 3vq2_A          490 -WG-VFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLD  527 (606)
T ss_dssp             -TT-TTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEE
T ss_pred             -hh-hhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEE
Confidence             55 889999999999999999988899999999998764

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.79  E-value=2.9e-19  Score=151.12  Aligned_cols=172  Identities=19%  Similarity=0.209  Sum_probs=116.8

Q ss_pred             CCCCccCceecCccccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcC
Q 038163            1 MSFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLD   80 (207)
Q Consensus         1 l~~n~~~~~~p~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~   80 (207)
                      |++|.+.+ +++..|.++++|++|++++|.+  ....|..|..+++|++|++++|.+++..|   ..+..+++|++|+++
T Consensus        33 Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~n~i--~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~---~~~~~l~~L~~L~Ls  106 (549)
T 2z81_A           33 LSFNKITY-IGHGDLRACANLQVLILKSSRI--NTIEGDAFYSLGSLEHLDLSDNHLSSLSS---SWFGPLSSLKYLNLM  106 (549)
T ss_dssp             CCSSCCCE-ECSSTTSSCTTCCEEECTTSCC--CEECTTTTTTCTTCCEEECTTSCCCSCCH---HHHTTCTTCCEEECT
T ss_pred             CcCCccCc-cChhhhhcCCcccEEECCCCCc--CccChhhccccccCCEEECCCCccCccCH---HHhccCCCCcEEECC
Confidence            46677764 4445567788888888888877  44455677777888888888887777666   557777778888888


Q ss_pred             CCCCCh-HHHHhhcccccc-----cCCcccceeccccccccCCCCCCCccceecccccccccCchhHHHHHhcCCCccEE
Q 038163           81 DSPLHI-SLLQSIASIFPL-----LKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYL  154 (207)
Q Consensus        81 ~~~~~~-~~~~~l~~l~~L-----~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L  154 (207)
                      +|.+.. ..+..+..+++|     ++|...+.++..      .+.++++|++|+++  +|.+++..+..+. .+++|+.|
T Consensus       107 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~------~~~~l~~L~~L~L~--~n~l~~~~~~~l~-~l~~L~~L  177 (549)
T 2z81_A          107 GNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRI------DFAGLTSLNELEIK--ALSLRNYQSQSLK-SIRDIHHL  177 (549)
T ss_dssp             TCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTT------TTTTCCEEEEEEEE--ETTCCEECTTTTT-TCSEEEEE
T ss_pred             CCcccccchhhhhhccCCccEEECCCCccccccCHh------hhhcccccCeeecc--CCcccccChhhhh-ccccCceE
Confidence            877764 223344444444     555533334321      67777788888888  8877766676666 77777777


Q ss_pred             EccCCccCcccccchhhhhcCCCCCceEEecCCcCCC
Q 038163          155 SLSYYTLGINSSETLNQGLCSLVHLQELYIASNDLRG  191 (207)
Q Consensus       155 ~l~~n~~~~~~~i~~~~~~~~~~~L~~L~l~~n~l~~  191 (207)
                      +++.|.+.   .+ +...+..+++|+.|++++|.+.+
T Consensus       178 ~l~~n~~~---~~-~~~~~~~l~~L~~L~L~~n~l~~  210 (549)
T 2z81_A          178 TLHLSESA---FL-LEIFADILSSVRYLELRDTNLAR  210 (549)
T ss_dssp             EEECSBST---TH-HHHHHHSTTTBSEEEEESCBCTT
T ss_pred             ecccCccc---cc-chhhHhhcccccEEEccCCcccc
Confidence            77777776   55 54234567888888888888775

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.79  E-value=6.5e-20  Score=145.04  Aligned_cols=184  Identities=19%  Similarity=0.150  Sum_probs=136.4

Q ss_pred             CCCCccCceecCccc-cCCCCCcEEecCCCcccCCCcch----hhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCcc
Q 038163            1 MSFNEINNLVVPQGY-NGLRKLKSLDLSGVGVRDGSKLL----QSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNME   75 (207)
Q Consensus         1 l~~n~~~~~~p~~~~-~~l~~L~~L~ls~n~i~~~~~~~----~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~   75 (207)
                      |++|.+.+.+|...+ ..+++|++|++++|.+  ....+    ..+..+++|++|++++|.++...+   ..+..+++|+
T Consensus        98 l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i--~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~---~~~~~l~~L~  172 (310)
T 4glp_A           98 LEDLKITGTMPPLPLEATGLALSSLRLRNVSW--ATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSC---EQVRAFPALT  172 (310)
T ss_dssp             EESCCCBSCCCCCSSSCCCBCCSSCEEESCCC--SSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCT---TSCCCCTTCC
T ss_pred             eeCCEeccchhhhhhhccCCCCCEEEeecccc--cchhhhhHHHHhhhccCCCEEEeeCCCcchhhH---HHhccCCCCC
Confidence            367888888876644 8899999999999999  34322    345679999999999999998877   7888999999


Q ss_pred             EEEcCCCCCChH--HH-----Hhhcccccc--cCCcccce--eccccccccCCCCCCCccceecccccccccCchhHHHH
Q 038163           76 YLKLDDSPLHIS--LL-----QSIASIFPL--LKNLSMIG--CEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFLQII  144 (207)
Q Consensus        76 ~L~l~~~~~~~~--~~-----~~l~~l~~L--~~n~~~~~--~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~~~~~l  144 (207)
                      +|++++|.+.+.  .+     ..+..++.|  ++|.++..  .+..      .+..+++|++|+++  +|.+++..|..+
T Consensus       173 ~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~------l~~~l~~L~~L~Ls--~N~l~~~~p~~~  244 (310)
T 4glp_A          173 SLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAA------LAAAGVQPHSLDLS--HNSLRATVNPSA  244 (310)
T ss_dssp             EEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHH------HHHHTCCCSSEECT--TSCCCCCCCSCC
T ss_pred             EEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHH------HHhcCCCCCEEECC--CCCCCccchhhH
Confidence            999999997653  21     122334444  77777531  1110      13567889999999  999987656555


Q ss_pred             HhcC---CCccEEEccCCccCcccccchhhhhcCCCCCceEEecCCcCCCCccccccCCCCCccCC
Q 038163          145 SESM---SSLKYLSLSYYTLGINSSETLNQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILD  207 (207)
Q Consensus       145 ~~~~---~~L~~L~l~~n~~~~~~~i~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~  207 (207)
                      . .+   ++|++|++++|.++   .+ |. .+.  ++|+.|++++|++.+. |. +..+++|+.|+
T Consensus       245 ~-~~~~~~~L~~L~Ls~N~l~---~l-p~-~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~  300 (310)
T 4glp_A          245 P-RCMWSSALNSLNLSFAGLE---QV-PK-GLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLT  300 (310)
T ss_dssp             S-SCCCCTTCCCEECCSSCCC---SC-CS-CCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEE
T ss_pred             H-hccCcCcCCEEECCCCCCC---ch-hh-hhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEE
Confidence            5 55   68999999999998   77 76 453  7999999999999863 33 56677777653

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.79  E-value=9e-19  Score=139.46  Aligned_cols=173  Identities=17%  Similarity=0.189  Sum_probs=107.7

Q ss_pred             CCCCccCceecCccccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcC
Q 038163            1 MSFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLD   80 (207)
Q Consensus         1 l~~n~~~~~~p~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~   80 (207)
                      |++|.+.+ +++..|..+++|++|++++|.+   ..+|..+.  ++|++|++++|.++...+   ..+..+++|++|+++
T Consensus        83 L~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l---~~l~~~~~--~~L~~L~l~~n~l~~~~~---~~~~~l~~L~~L~l~  153 (330)
T 1xku_A           83 LINNKISK-ISPGAFAPLVKLERLYLSKNQL---KELPEKMP--KTLQELRVHENEITKVRK---SVFNGLNQMIVVELG  153 (330)
T ss_dssp             CCSSCCCC-BCTTTTTTCTTCCEEECCSSCC---SBCCSSCC--TTCCEEECCSSCCCBBCH---HHHTTCTTCCEEECC
T ss_pred             CCCCcCCe-eCHHHhcCCCCCCEEECCCCcC---CccChhhc--ccccEEECCCCcccccCH---hHhcCCccccEEECC
Confidence            56788885 4446689999999999999998   45555443  678888888887776655   556777777777777


Q ss_pred             CCCCCh--HHHHhhcccccc-----cCCccc---------------------ceeccccccccCCCCCCCccceeccccc
Q 038163           81 DSPLHI--SLLQSIASIFPL-----LKNLSM---------------------IGCEVNGVIRGQDFPHSKSLEHLDMEFM  132 (207)
Q Consensus        81 ~~~~~~--~~~~~l~~l~~L-----~~n~~~---------------------~~~~~~~~~~~~~~~~~~~L~~L~l~~~  132 (207)
                      +|.+..  ..+..+..+++|     .+|.+.                     +..+.       .+..+++|+.|+++  
T Consensus       154 ~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~-------~~~~l~~L~~L~Ls--  224 (330)
T 1xku_A          154 TNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAA-------SLKGLNNLAKLGLS--  224 (330)
T ss_dssp             SSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCCTTCSEEECTTSCCCEECTG-------GGTTCTTCCEEECC--
T ss_pred             CCcCCccCcChhhccCCCCcCEEECCCCccccCCccccccCCEEECCCCcCCccCHH-------HhcCCCCCCEEECC--
Confidence            777653  222333333333     334333                     32222       45556666666666  


Q ss_pred             ccccCchhHHHHHhcCCCccEEEccCCccCcccccchhhhhcCCCCCceEEecCCcCCCCccccc
Q 038163          133 RIALNTSFLQIISESMSSLKYLSLSYYTLGINSSETLNQGLCSLVHLQELYIASNDLRGSLPWCM  197 (207)
Q Consensus       133 ~n~~~~~~~~~l~~~~~~L~~L~l~~n~~~~~~~i~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~  197 (207)
                      +|.+++..+..+. .+++|+.|++++|.++   .+ |. .+..+++|+.|++++|++.+..+..|
T Consensus       225 ~n~l~~~~~~~~~-~l~~L~~L~L~~N~l~---~l-p~-~l~~l~~L~~L~l~~N~i~~~~~~~f  283 (330)
T 1xku_A          225 FNSISAVDNGSLA-NTPHLRELHLNNNKLV---KV-PG-GLADHKYIQVVYLHNNNISAIGSNDF  283 (330)
T ss_dssp             SSCCCEECTTTGG-GSTTCCEEECCSSCCS---SC-CT-TTTTCSSCCEEECCSSCCCCCCTTSS
T ss_pred             CCcCceeChhhcc-CCCCCCEEECCCCcCc---cC-Ch-hhccCCCcCEEECCCCcCCccChhhc
Confidence            6666654444555 5666666666666665   55 55 56666666666666666664433333

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.79  E-value=6e-19  Score=146.28  Aligned_cols=186  Identities=13%  Similarity=0.099  Sum_probs=128.9

Q ss_pred             CccCceecCccccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcCCCC
Q 038163            4 NEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDDSP   83 (207)
Q Consensus         4 n~~~~~~p~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~~~~   83 (207)
                      +.+. .+|...   -+++++|++++|.+  ....+..|..+++|++|++++|.++...+   ..+..+++|++|++++|.
T Consensus        64 ~~l~-~iP~~~---~~~l~~L~L~~n~i--~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~---~~~~~l~~L~~L~L~~n~  134 (452)
T 3zyi_A           64 RGLS-EVPQGI---PSNTRYLNLMENNI--QMIQADTFRHLHHLEVLQLGRNSIRQIEV---GAFNGLASLNTLELFDNW  134 (452)
T ss_dssp             SCCS-SCCSCC---CTTCSEEECCSSCC--CEECTTTTTTCTTCCEEECCSSCCCEECT---TTTTTCTTCCEEECCSSC
T ss_pred             CCcC-ccCCCC---CCCccEEECcCCcC--ceECHHHcCCCCCCCEEECCCCccCCcCh---hhccCcccCCEEECCCCc
Confidence            3444 467543   36899999999999  56667889999999999999999998887   788999999999999999


Q ss_pred             CChHHHHhhcccccc-----cCCcccceecc-------ccccc-----------cCCCCCCCccceecccccccccCchh
Q 038163           84 LHISLLQSIASIFPL-----LKNLSMIGCEV-------NGVIR-----------GQDFPHSKSLEHLDMEFMRIALNTSF  140 (207)
Q Consensus        84 ~~~~~~~~l~~l~~L-----~~n~~~~~~~~-------~~~~~-----------~~~~~~~~~L~~L~l~~~~n~~~~~~  140 (207)
                      +....+..+..+++|     ++|.+....+.       ...++           .+.+..+++|++|+++  +|.+++ +
T Consensus       135 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~--~n~l~~-~  211 (452)
T 3zyi_A          135 LTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLG--MCNIKD-M  211 (452)
T ss_dssp             CSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECT--TSCCSS-C
T ss_pred             CCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECC--CCcccc-c
Confidence            885444445555555     77777653332       00001           1134455666666666  666653 2


Q ss_pred             HHHHHhcCCCccEEEccCCccCcccccchhhhhcCCCCCceEEecCCcCCCCccccccCCCCCccCC
Q 038163          141 LQIISESMSSLKYLSLSYYTLGINSSETLNQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILD  207 (207)
Q Consensus       141 ~~~l~~~~~~L~~L~l~~n~~~~~~~i~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~  207 (207)
                      + .+. .+++|+.|++++|.+.  +.. +. .+..+++|+.|++++|++.+..+..|..+++|+.||
T Consensus       212 ~-~~~-~l~~L~~L~Ls~N~l~--~~~-~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  272 (452)
T 3zyi_A          212 P-NLT-PLVGLEELEMSGNHFP--EIR-PG-SFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELN  272 (452)
T ss_dssp             C-CCT-TCTTCCEEECTTSCCS--EEC-GG-GGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred             c-ccc-ccccccEEECcCCcCc--ccC-cc-cccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEE
Confidence            2 234 5667777777777776  333 44 677777788888888877766667777777777653

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.79  E-value=1e-19  Score=144.35  Aligned_cols=184  Identities=18%  Similarity=0.106  Sum_probs=110.5

Q ss_pred             CCCCccCceecCccccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccc-h------------hc
Q 038163            1 MSFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTIT-T------------QE   67 (207)
Q Consensus         1 l~~n~~~~~~p~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~-~------------~~   67 (207)
                      |++|.+.+ +++..|..+++|++|++++|.+  ... +. +..+++|++|++++|.+++..+.. .            ..
T Consensus        41 L~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l--~~~-~~-~~~l~~L~~L~Ls~n~l~~l~~~~~L~~L~l~~n~l~~~~  115 (317)
T 3o53_A           41 LSGNPLSQ-ISAADLAPFTKLELLNLSSNVL--YET-LD-LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVS  115 (317)
T ss_dssp             CTTSCCCC-CCHHHHTTCTTCCEEECTTSCC--EEE-EE-ETTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCSEEE
T ss_pred             CcCCccCc-CCHHHhhCCCcCCEEECCCCcC--Ccc-hh-hhhcCCCCEEECcCCccccccCCCCcCEEECCCCccCCcC
Confidence            45677775 4445567777788888887777  222 22 667777777777777665432200 0            00


Q ss_pred             ccCCCCccEEEcCCCCCChHHHHhhcccccc-----cCCcccceeccccccccCCC-CCCCccceecccccccccCchhH
Q 038163           68 LHNFTNMEYLKLDDSPLHISLLQSIASIFPL-----LKNLSMIGCEVNGVIRGQDF-PHSKSLEHLDMEFMRIALNTSFL  141 (207)
Q Consensus        68 l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L-----~~n~~~~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~n~~~~~~~  141 (207)
                      ...+++|++|++++|.+....+..+..+++|     ++|.+.+..+.       .+ ..+++|++|+++  +|.++.. +
T Consensus       116 ~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-------~~~~~l~~L~~L~L~--~N~l~~~-~  185 (317)
T 3o53_A          116 CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFA-------ELAASSDTLEHLNLQ--YNFIYDV-K  185 (317)
T ss_dssp             ECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGG-------GGGGGTTTCCEEECT--TSCCCEE-E
T ss_pred             ccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHH-------HHhhccCcCCEEECC--CCcCccc-c
Confidence            1123455556666665554333333333333     55555554443       33 345677777777  7766533 2


Q ss_pred             HHHHhcCCCccEEEccCCccCcccccchhhhhcCCCCCceEEecCCcCCCCccccccCCCCCccCC
Q 038163          142 QIISESMSSLKYLSLSYYTLGINSSETLNQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILD  207 (207)
Q Consensus       142 ~~l~~~~~~L~~L~l~~n~~~~~~~i~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~  207 (207)
                       ... .+++|+.|++++|.++   .+ +. .+..+++|+.|++++|++. .+|..+..+++|+.|+
T Consensus       186 -~~~-~l~~L~~L~Ls~N~l~---~l-~~-~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~  243 (317)
T 3o53_A          186 -GQV-VFAKLKTLDLSSNKLA---FM-GP-EFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFD  243 (317)
T ss_dssp             -CCC-CCTTCCEEECCSSCCC---EE-CG-GGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEE
T ss_pred             -ccc-ccccCCEEECCCCcCC---cc-hh-hhcccCcccEEECcCCccc-chhhHhhcCCCCCEEE
Confidence             112 3667777777777777   56 55 5777888888888888887 4677777777777653

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.79  E-value=2.1e-19  Score=151.25  Aligned_cols=80  Identities=20%  Similarity=0.150  Sum_probs=41.7

Q ss_pred             CCCccceecccccccccCchhHHHHHhcCCCccEEEccCCccCccc--ccchhhhhcCCCCCceEEecCCcCCCCccc-c
Q 038163          120 HSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSLSYYTLGINS--SETLNQGLCSLVHLQELYIASNDLRGSLPW-C  196 (207)
Q Consensus       120 ~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L~l~~n~~~~~~--~i~~~~~~~~~~~L~~L~l~~n~l~~~~p~-~  196 (207)
                      .+++|++|+++  +|.+++..+..+. .+++|+.|++++|.++  +  .+ |. .+..+++|+.|++++|.+.+.+|. .
T Consensus       322 ~l~~L~~L~Ls--~n~l~~~~~~~~~-~l~~L~~L~L~~N~l~--~l~~~-~~-~~~~l~~L~~L~Ls~N~l~~~l~~~~  394 (520)
T 2z7x_B          322 KISPFLHLDFS--NNLLTDTVFENCG-HLTELETLILQMNQLK--ELSKI-AE-MTTQMKSLQQLDISQNSVSYDEKKGD  394 (520)
T ss_dssp             SCCCCCEEECC--SSCCCTTTTTTCC-CCSSCCEEECCSSCCC--BHHHH-HH-HHTTCTTCCEEECCSSCCBCCGGGCS
T ss_pred             hCCcccEEEeE--CCccChhhhhhhc-cCCCCCEEEccCCccC--ccccc-hH-HHhhCCCCCEEECCCCcCCcccccch
Confidence            34455555555  5555544444444 5555555555555555  2  22 23 455566666666666666553443 2


Q ss_pred             ccCCCCCccC
Q 038163          197 MANMTSLRIL  206 (207)
Q Consensus       197 ~~~l~~L~~l  206 (207)
                      +..+++|+.|
T Consensus       395 ~~~l~~L~~L  404 (520)
T 2z7x_B          395 CSWTKSLLSL  404 (520)
T ss_dssp             CCCCTTCCEE
T ss_pred             hccCccCCEE
Confidence            4555555544

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.79  E-value=6.3e-20  Score=145.26  Aligned_cols=170  Identities=16%  Similarity=0.151  Sum_probs=128.0

Q ss_pred             CCCCCcEEecCCCcccCCCcchhhh--cCCCCCCEEEcCCCcCCcccccchhcccCC-----CCccEEEcCCCCCChHHH
Q 038163           17 GLRKLKSLDLSGVGVRDGSKLLQSI--GSFSSLNSLYLSSNNFTETVTITTQELHNF-----TNMEYLKLDDSPLHISLL   89 (207)
Q Consensus        17 ~l~~L~~L~ls~n~i~~~~~~~~~~--~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l-----~~L~~L~l~~~~~~~~~~   89 (207)
                      .+++|++|++++|.+  .+.+|..+  ..+++|++|++++|.+++. |   ..+..+     ++|++|++++|.+.+..+
T Consensus        93 ~l~~L~~L~L~~n~l--~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~---~~~~~l~~~~~~~L~~L~L~~N~l~~~~~  166 (312)
T 1wwl_A           93 GISGLQELTLENLEV--TGTAPPPLLEATGPDLNILNLRNVSWATR-D---AWLAELQQWLKPGLKVLSIAQAHSLNFSC  166 (312)
T ss_dssp             TTSCCCEEEEEEEBC--BSCCCCCSSSCCSCCCSEEEEESCBCSSS-S---SHHHHHHTTCCTTCCEEEEESCSCCCCCT
T ss_pred             CcCCccEEEccCCcc--cchhHHHHHHhcCCCccEEEccCCCCcch-h---HHHHHHHHhhcCCCcEEEeeCCCCccchH
Confidence            689999999999999  56777765  8899999999999999987 6   444444     889999999999886665


Q ss_pred             Hhhcccccc-----cCCcccce--eccccccccCCCCCCCccceecccccccccCc--hhHH-HHHhcCCCccEEEccCC
Q 038163           90 QSIASIFPL-----LKNLSMIG--CEVNGVIRGQDFPHSKSLEHLDMEFMRIALNT--SFLQ-IISESMSSLKYLSLSYY  159 (207)
Q Consensus        90 ~~l~~l~~L-----~~n~~~~~--~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~--~~~~-~l~~~~~~L~~L~l~~n  159 (207)
                      ..+..+++|     ++|.+.+.  .+..     ..+..+++|++|+++  +|.++.  ..+. .+. .+++|+.|++++|
T Consensus       167 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-----~~~~~l~~L~~L~L~--~N~l~~~~~~~~~~~~-~l~~L~~L~Ls~N  238 (312)
T 1wwl_A          167 EQVRVFPALSTLDLSDNPELGERGLISA-----LCPLKFPTLQVLALR--NAGMETPSGVCSALAA-ARVQLQGLDLSHN  238 (312)
T ss_dssp             TTCCCCSSCCEEECCSCTTCHHHHHHHH-----SCTTSCTTCCEEECT--TSCCCCHHHHHHHHHH-TTCCCSEEECTTS
T ss_pred             HHhccCCCCCEEECCCCCcCcchHHHHH-----HHhccCCCCCEEECC--CCcCcchHHHHHHHHh-cCCCCCEEECCCC
Confidence            677666666     77776653  2220     023788999999999  999873  2333 334 7789999999999


Q ss_pred             ccCcccccchhhhhcCCCCCceEEecCCcCCCCccccccCCCCCccC
Q 038163          160 TLGINSSETLNQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRIL  206 (207)
Q Consensus       160 ~~~~~~~i~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l  206 (207)
                      .++  +.+ +...+..+++|+.|++++|.+. .+|..+.  ++|+.|
T Consensus       239 ~l~--~~~-~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L  279 (312)
T 1wwl_A          239 SLR--DAA-GAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVL  279 (312)
T ss_dssp             CCC--SSC-CCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEE
T ss_pred             cCC--ccc-chhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEE
Confidence            998  444 3325666889999999999998 6676665  666654

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.78  E-value=7.4e-19  Score=136.60  Aligned_cols=173  Identities=21%  Similarity=0.201  Sum_probs=138.8

Q ss_pred             CCCCccCceecCccccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcC
Q 038163            1 MSFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLD   80 (207)
Q Consensus         1 l~~n~~~~~~p~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~   80 (207)
                      |++|.+. .+++..|..+++|++|++++|.+  ....+..+..+++|++|++++|.+....+   ..+..+++|++|+++
T Consensus        59 l~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l--~~~~~~~~~~l~~L~~L~l~~n~l~~~~~---~~~~~l~~L~~L~l~  132 (276)
T 2z62_A           59 LSRCEIQ-TIEDGAYQSLSHLSTLILTGNPI--QSLALGAFSGLSSLQKLVAVETNLASLEN---FPIGHLKTLKELNVA  132 (276)
T ss_dssp             CTTCCCC-EECTTTTTTCTTCCEEECTTCCC--CEECTTTTTTCTTCCEEECTTSCCCCSTT---CCCTTCTTCCEEECC
T ss_pred             CCCCcCC-ccCHHHccCCcCCCEEECCCCcc--CccChhhhcCCccccEEECCCCCccccCc---hhcccCCCCCEEECc
Confidence            5678888 46767789999999999999999  55566789999999999999999998766   578899999999999


Q ss_pred             CCCCChH-HHHhhcccccc-----cCCcccceeccccccccCCCCCCCccc----eecccccccccCchhHHHHHhcCCC
Q 038163           81 DSPLHIS-LLQSIASIFPL-----LKNLSMIGCEVNGVIRGQDFPHSKSLE----HLDMEFMRIALNTSFLQIISESMSS  150 (207)
Q Consensus        81 ~~~~~~~-~~~~l~~l~~L-----~~n~~~~~~~~~~~~~~~~~~~~~~L~----~L~l~~~~n~~~~~~~~~l~~~~~~  150 (207)
                      +|.+... .+..+..+++|     ++|.+++..+.       .+..+..|+    .++++  +|.+++..+..+  ...+
T Consensus       133 ~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~-------~~~~l~~L~~l~l~L~ls--~n~l~~~~~~~~--~~~~  201 (276)
T 2z62_A          133 HNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT-------DLRVLHQMPLLNLSLDLS--LNPMNFIQPGAF--KEIR  201 (276)
T ss_dssp             SSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGG-------GGHHHHTCTTCCEEEECC--SSCCCEECTTSS--CSCC
T ss_pred             CCccceecCchhhccCCCCCEEECCCCCCCcCCHH-------HhhhhhhccccceeeecC--CCcccccCcccc--CCCc
Confidence            9998752 45666665555     88888775554       566566666    89999  999985444333  4568


Q ss_pred             ccEEEccCCccCcccccchhhhhcCCCCCceEEecCCcCCCCcc
Q 038163          151 LKYLSLSYYTLGINSSETLNQGLCSLVHLQELYIASNDLRGSLP  194 (207)
Q Consensus       151 L~~L~l~~n~~~~~~~i~~~~~~~~~~~L~~L~l~~n~l~~~~p  194 (207)
                      |+.|++++|.++   .+ +...+..+++|+.|++++|++....+
T Consensus       202 L~~L~L~~n~l~---~~-~~~~~~~l~~L~~L~l~~N~~~c~c~  241 (276)
T 2z62_A          202 LKELALDTNQLK---SV-PDGIFDRLTSLQKIWLHTNPWDCSCP  241 (276)
T ss_dssp             EEEEECCSSCCS---CC-CTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred             ccEEECCCCcee---ec-CHhHhcccccccEEEccCCcccccCC
Confidence            999999999998   66 55367889999999999999986544

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.78  E-value=1.6e-18  Score=135.89  Aligned_cols=167  Identities=17%  Similarity=0.131  Sum_probs=137.0

Q ss_pred             CCCCccCceecCccccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcC
Q 038163            1 MSFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLD   80 (207)
Q Consensus         1 l~~n~~~~~~p~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~   80 (207)
                      |++|.+.+ +++..|..+++|++|++++|.+   ..++.. ..+++|++|++++|.++. +|   ..+..+++|++|+++
T Consensus        38 L~~N~l~~-~~~~~~~~l~~L~~L~L~~n~l---~~~~~~-~~l~~L~~L~Ls~N~l~~-l~---~~~~~l~~L~~L~l~  108 (290)
T 1p9a_G           38 LSENLLYT-FSLATLMPYTRLTQLNLDRAEL---TKLQVD-GTLPVLGTLDLSHNQLQS-LP---LLGQTLPALTVLDVS  108 (290)
T ss_dssp             CTTSCCSE-EEGGGGTTCTTCCEEECTTSCC---CEEECC-SCCTTCCEEECCSSCCSS-CC---CCTTTCTTCCEEECC
T ss_pred             cCCCcCCc-cCHHHhhcCCCCCEEECCCCcc---CcccCC-CCCCcCCEEECCCCcCCc-Cc---hhhccCCCCCEEECC
Confidence            57888885 4556789999999999999999   344443 789999999999999985 56   577889999999999


Q ss_pred             CCCCChHHHHhhcccccc-----cCCcccceeccccccccCCCCCCCccceecccccccccCchhHHHHHhcCCCccEEE
Q 038163           81 DSPLHISLLQSIASIFPL-----LKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLS  155 (207)
Q Consensus        81 ~~~~~~~~~~~l~~l~~L-----~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L~  155 (207)
                      +|.++...+..+..+++|     ++|.+.+..+.       .+..+++|+.|+++  +|.++...+..+. .+++|+.|+
T Consensus       109 ~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~-------~~~~l~~L~~L~L~--~N~l~~l~~~~~~-~l~~L~~L~  178 (290)
T 1p9a_G          109 FNRLTSLPLGALRGLGELQELYLKGNELKTLPPG-------LLTPTPKLEKLSLA--NNNLTELPAGLLN-GLENLDTLL  178 (290)
T ss_dssp             SSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTT-------TTTTCTTCCEEECT--TSCCSCCCTTTTT-TCTTCCEEE
T ss_pred             CCcCcccCHHHHcCCCCCCEEECCCCCCCccChh-------hcccccCCCEEECC--CCcCCccCHHHhc-CcCCCCEEE
Confidence            999985444455555554     88888875554       67899999999999  9999854445556 789999999


Q ss_pred             ccCCccCcccccchhhhhcCCCCCceEEecCCcCCC
Q 038163          156 LSYYTLGINSSETLNQGLCSLVHLQELYIASNDLRG  191 (207)
Q Consensus       156 l~~n~~~~~~~i~~~~~~~~~~~L~~L~l~~n~l~~  191 (207)
                      +++|.++   .+ |. .+....+|+.+++++|++..
T Consensus       179 L~~N~l~---~i-p~-~~~~~~~L~~l~L~~Np~~C  209 (290)
T 1p9a_G          179 LQENSLY---TI-PK-GFFGSHLLPFAFLHGNPWLC  209 (290)
T ss_dssp             CCSSCCC---CC-CT-TTTTTCCCSEEECCSCCBCC
T ss_pred             CCCCcCC---cc-Ch-hhcccccCCeEEeCCCCccC
Confidence            9999998   88 87 77788899999999998864

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.78  E-value=2.1e-19  Score=152.45  Aligned_cols=173  Identities=26%  Similarity=0.224  Sum_probs=97.8

Q ss_pred             cCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcCCCCCChHHH-Hhhcc
Q 038163           16 NGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDDSPLHISLL-QSIAS   94 (207)
Q Consensus        16 ~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~l~~   94 (207)
                      ..+++|++|++++|.++.....+..+..+++|++|++++|.+.+..+    .+..+++|++|++++|.+....+ ..+..
T Consensus       344 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~----~~~~l~~L~~L~l~~n~l~~~~~~~~~~~  419 (570)
T 2z63_A          344 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSS----NFLGLEQLEHLDFQHSNLKQMSEFSVFLS  419 (570)
T ss_dssp             CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEE----EEETCTTCCEEECTTSEEESCTTSCTTTT
T ss_pred             ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccc----cccccCCCCEEEccCCccccccchhhhhc
Confidence            45666667777777662111225566666677777777666665433    35566666666666665543222 12233


Q ss_pred             cccc-----cCCcccceeccccccccCCCCCCCccceecccccccccC-chhHHHHHhcCCCccEEEccCCccCcccccc
Q 038163           95 IFPL-----LKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALN-TSFLQIISESMSSLKYLSLSYYTLGINSSET  168 (207)
Q Consensus        95 l~~L-----~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~-~~~~~~l~~~~~~L~~L~l~~n~~~~~~~i~  168 (207)
                      +++|     ++|.+.+..+.       .+..+++|+.|+++  +|.++ +..|..+. .+++|+.|++++|.++  +.. 
T Consensus       420 l~~L~~L~l~~n~l~~~~~~-------~~~~l~~L~~L~l~--~n~l~~~~~p~~~~-~l~~L~~L~l~~n~l~--~~~-  486 (570)
T 2z63_A          420 LRNLIYLDISHTHTRVAFNG-------IFNGLSSLEVLKMA--GNSFQENFLPDIFT-ELRNLTFLDLSQCQLE--QLS-  486 (570)
T ss_dssp             CTTCCEEECTTSCCEECCTT-------TTTTCTTCCEEECT--TCEEGGGEECSCCT-TCTTCCEEECTTSCCC--EEC-
T ss_pred             CCCCCEEeCcCCcccccchh-------hhhcCCcCcEEECc--CCcCccccchhhhh-cccCCCEEECCCCccc--cCC-
Confidence            3332     55555554444       55566666666666  66654 23444455 5666666666666665  333 


Q ss_pred             hhhhhcCCCCCceEEecCCcCCCCccccccCCCCCccC
Q 038163          169 LNQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRIL  206 (207)
Q Consensus       169 ~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l  206 (207)
                      |. .+..+++|+.|++++|++.+..|..+..+++|+.+
T Consensus       487 ~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  523 (570)
T 2z63_A          487 PT-AFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKI  523 (570)
T ss_dssp             TT-TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred             hh-hhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEE
Confidence            43 55666666666666666665555556666666554

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.78  E-value=3.2e-19  Score=158.27  Aligned_cols=78  Identities=15%  Similarity=0.197  Sum_probs=38.1

Q ss_pred             CCccCceecCccccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhc--ccCCCCccEEEcC
Q 038163            3 FNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQE--LHNFTNMEYLKLD   80 (207)
Q Consensus         3 ~n~~~~~~p~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~--l~~l~~L~~L~l~   80 (207)
                      +|.+.+.+++..|.++++|++|++++|.+  ....|..|..+++|++|++++|.+++..|   ..  +.++++|++|+++
T Consensus        57 ~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l--~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~---~~~~~~~L~~L~~L~Ls  131 (844)
T 3j0a_A           57 SQYTPLTIDKEAFRNLPNLRILDLGSSKI--YFLHPDAFQGLFHLFELRLYFCGLSDAVL---KDGYFRNLKALTRLDLS  131 (844)
T ss_dssp             TTCCCCEECTTTTSSCTTCCEEECTTCCC--CEECTTSSCSCSSCCCEECTTCCCSSCCS---TTCCCSSCSSCCEEEEE
T ss_pred             CCCCccccCHHHhcCCCCCCEEECCCCcC--cccCHhHccCCcccCEeeCcCCCCCcccc---cCccccccCCCCEEECC
Confidence            34344445445555555555555555555  33345555555555555555555544333   11  4444444444444


Q ss_pred             CCCCC
Q 038163           81 DSPLH   85 (207)
Q Consensus        81 ~~~~~   85 (207)
                      +|.+.
T Consensus       132 ~N~l~  136 (844)
T 3j0a_A          132 KNQIR  136 (844)
T ss_dssp             SCCCC
T ss_pred             CCccc
Confidence            44443

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.77  E-value=5.5e-19  Score=149.45  Aligned_cols=181  Identities=18%  Similarity=0.146  Sum_probs=146.2

Q ss_pred             CCCccCceecCccccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcCC
Q 038163            2 SFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDD   81 (207)
Q Consensus         2 ~~n~~~~~~p~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~~   81 (207)
                      ++|.++ .+|+.+   .+++++|++++|.+  ....|..+..+++|++|++++|.+++..|   ..+..+++|++|++++
T Consensus        13 ~~~~l~-~ip~~~---~~~L~~L~Ls~n~l--~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~---~~~~~l~~L~~L~Ls~   83 (549)
T 2z81_A           13 RSRSFT-SIPSGL---TAAMKSLDLSFNKI--TYIGHGDLRACANLQVLILKSSRINTIEG---DAFYSLGSLEHLDLSD   83 (549)
T ss_dssp             TTSCCS-SCCSCC---CTTCCEEECCSSCC--CEECSSTTSSCTTCCEEECTTSCCCEECT---TTTTTCTTCCEEECTT
T ss_pred             CCCccc-cccccC---CCCccEEECcCCcc--CccChhhhhcCCcccEEECCCCCcCccCh---hhccccccCCEEECCC
Confidence            456676 688654   27899999999999  55567789999999999999999998887   7889999999999999


Q ss_pred             CCCChHHHHhhcccccc-----cCCcccce-eccccccccCCCCCCCccceecccccccccCchhH-HHHHhcCCCccEE
Q 038163           82 SPLHISLLQSIASIFPL-----LKNLSMIG-CEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFL-QIISESMSSLKYL  154 (207)
Q Consensus        82 ~~~~~~~~~~l~~l~~L-----~~n~~~~~-~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~~~-~~l~~~~~~L~~L  154 (207)
                      |.+.+..+..++.+++|     ++|.+.+. .+.       .+..+++|++|+++  +|.+.+.++ ..+. .+++|++|
T Consensus        84 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-------~~~~l~~L~~L~L~--~n~~~~~~~~~~~~-~l~~L~~L  153 (549)
T 2z81_A           84 NHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTS-------LFPNLTNLQTLRIG--NVETFSEIRRIDFA-GLTSLNEL  153 (549)
T ss_dssp             SCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSC-------SCTTCTTCCEEEEE--ESSSCCEECTTTTT-TCCEEEEE
T ss_pred             CccCccCHHHhccCCCCcEEECCCCcccccchhh-------hhhccCCccEEECC--CCccccccCHhhhh-cccccCee
Confidence            99986666656666665     77887752 455       78899999999999  998433444 5677 89999999


Q ss_pred             EccCCccCcccccchhhhhcCCCCCceEEecCCcCCCCcccc-ccCCCCCccC
Q 038163          155 SLSYYTLGINSSETLNQGLCSLVHLQELYIASNDLRGSLPWC-MANMTSLRIL  206 (207)
Q Consensus       155 ~l~~n~~~~~~~i~~~~~~~~~~~L~~L~l~~n~l~~~~p~~-~~~l~~L~~l  206 (207)
                      ++++|.+.  +.+ |. .+..+++|+.|+++.|.+.. +|.. +..+++|+.|
T Consensus       154 ~L~~n~l~--~~~-~~-~l~~l~~L~~L~l~~n~~~~-~~~~~~~~l~~L~~L  201 (549)
T 2z81_A          154 EIKALSLR--NYQ-SQ-SLKSIRDIHHLTLHLSESAF-LLEIFADILSSVRYL  201 (549)
T ss_dssp             EEEETTCC--EEC-TT-TTTTCSEEEEEEEECSBSTT-HHHHHHHSTTTBSEE
T ss_pred             eccCCccc--ccC-hh-hhhccccCceEecccCcccc-cchhhHhhcccccEE
Confidence            99999998  556 76 89999999999999999864 4433 3567777765

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.77  E-value=2.2e-18  Score=145.03  Aligned_cols=146  Identities=26%  Similarity=0.284  Sum_probs=106.9

Q ss_pred             cCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcCCCCCCh--HHHHhhcccccc-----cCCcccceeccccccc
Q 038163           42 GSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDDSPLHI--SLLQSIASIFPL-----LKNLSMIGCEVNGVIR  114 (207)
Q Consensus        42 ~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~--~~~~~l~~l~~L-----~~n~~~~~~~~~~~~~  114 (207)
                      ..+++|++|++++|.+++..|   ..+..+++|++|++++|.+.+  ..+..+..+++|     ++|.+.+.+|..    
T Consensus       321 ~~l~~L~~L~Ls~n~l~~~~~---~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~----  393 (520)
T 2z7x_B          321 SKISPFLHLDFSNNLLTDTVF---ENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKG----  393 (520)
T ss_dssp             SSCCCCCEEECCSSCCCTTTT---TTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGC----
T ss_pred             hhCCcccEEEeECCccChhhh---hhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccc----
Confidence            567888888888888888777   677888888888888888875  445556555555     777777655541    


Q ss_pred             cCCCCCCCccceecccccccccCchhHHHHHhcCCCccEEEccCCccCcccccchhhhhcCCCCCceEEecCCcCCCCcc
Q 038163          115 GQDFPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSLSYYTLGINSSETLNQGLCSLVHLQELYIASNDLRGSLP  194 (207)
Q Consensus       115 ~~~~~~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L~l~~n~~~~~~~i~~~~~~~~~~~L~~L~l~~n~l~~~~p  194 (207)
                        .+..+++|+.|+++  +|.+++..+..+   .++|+.|++++|.++   .+ |. .+..+++|+.|++++|++.+ +|
T Consensus       394 --~~~~l~~L~~L~Ls--~N~l~~~~~~~l---~~~L~~L~Ls~N~l~---~i-p~-~~~~l~~L~~L~L~~N~l~~-l~  460 (520)
T 2z7x_B          394 --DCSWTKSLLSLNMS--SNILTDTIFRCL---PPRIKVLDLHSNKIK---SI-PK-QVVKLEALQELNVASNQLKS-VP  460 (520)
T ss_dssp             --SCCCCTTCCEEECC--SSCCCGGGGGSC---CTTCCEEECCSSCCC---CC-CG-GGGGCTTCCEEECCSSCCCC-CC
T ss_pred             --hhccCccCCEEECc--CCCCCcchhhhh---cccCCEEECCCCccc---cc-ch-hhhcCCCCCEEECCCCcCCc-cC
Confidence              46677888888888  888876555332   157888888888887   77 76 66678888888888888874 55


Q ss_pred             cc-ccCCCCCccCC
Q 038163          195 WC-MANMTSLRILD  207 (207)
Q Consensus       195 ~~-~~~l~~L~~l~  207 (207)
                      .. +..+++|+.+|
T Consensus       461 ~~~~~~l~~L~~L~  474 (520)
T 2z7x_B          461 DGIFDRLTSLQKIW  474 (520)
T ss_dssp             TTTTTTCTTCCEEE
T ss_pred             HHHhccCCcccEEE
Confidence            43 77777777653

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.77  E-value=9.9e-18  Score=132.48  Aligned_cols=170  Identities=17%  Similarity=0.197  Sum_probs=119.2

Q ss_pred             CCCCccCceecCccccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcC
Q 038163            1 MSFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLD   80 (207)
Q Consensus         1 l~~n~~~~~~p~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~   80 (207)
                      +++|.+.. +| . +..+++|++|++++|.+   ..++. +..+++|++|++++|.+++. +    .+..+++|++|+++
T Consensus        48 l~~~~i~~-l~-~-~~~l~~L~~L~L~~n~i---~~~~~-~~~l~~L~~L~L~~n~l~~~-~----~~~~l~~L~~L~l~  115 (308)
T 1h6u_A           48 AFGTGVTT-IE-G-VQYLNNLIGLELKDNQI---TDLAP-LKNLTKITELELSGNPLKNV-S----AIAGLQSIKTLDLT  115 (308)
T ss_dssp             CTTSCCCC-CT-T-GGGCTTCCEEECCSSCC---CCCGG-GTTCCSCCEEECCSCCCSCC-G----GGTTCTTCCEEECT
T ss_pred             eeCCCccC-ch-h-hhccCCCCEEEccCCcC---CCChh-HccCCCCCEEEccCCcCCCc-h----hhcCCCCCCEEECC
Confidence            35566663 54 3 67888888888888888   33444 78888888888888888763 3    57788888888888


Q ss_pred             CCCCChHHHHhhcccccc-----cCCcccceeccccccccCCCCCCCccceecccccccccCchhHHHHHhcCCCccEEE
Q 038163           81 DSPLHISLLQSIASIFPL-----LKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLS  155 (207)
Q Consensus        81 ~~~~~~~~~~~l~~l~~L-----~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L~  155 (207)
                      +|.+...  ..+..+++|     ++|.+++. +        .+..+++|++|+++  +|.+++..+  +. .+++|+.|+
T Consensus       116 ~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~-~--------~l~~l~~L~~L~l~--~n~l~~~~~--l~-~l~~L~~L~  179 (308)
T 1h6u_A          116 STQITDV--TPLAGLSNLQVLYLDLNQITNI-S--------PLAGLTNLQYLSIG--NAQVSDLTP--LA-NLSKLTTLK  179 (308)
T ss_dssp             TSCCCCC--GGGTTCTTCCEEECCSSCCCCC-G--------GGGGCTTCCEEECC--SSCCCCCGG--GT-TCTTCCEEE
T ss_pred             CCCCCCc--hhhcCCCCCCEEECCCCccCcC-c--------cccCCCCccEEEcc--CCcCCCChh--hc-CCCCCCEEE
Confidence            8887642  224444444     66666542 2        35567788888888  887775333  55 778888888


Q ss_pred             ccCCccCcccccchhhhhcCCCCCceEEecCCcCCCCccccccCCCCCccC
Q 038163          156 LSYYTLGINSSETLNQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRIL  206 (207)
Q Consensus       156 l~~n~~~~~~~i~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l  206 (207)
                      +++|.++   .+ +  .+..+++|+.|++++|++.+..  .+..+++|+.|
T Consensus       180 l~~n~l~---~~-~--~l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L  222 (308)
T 1h6u_A          180 ADDNKIS---DI-S--PLASLPNLIEVHLKNNQISDVS--PLANTSNLFIV  222 (308)
T ss_dssp             CCSSCCC---CC-G--GGGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEE
T ss_pred             CCCCccC---cC-h--hhcCCCCCCEEEccCCccCccc--cccCCCCCCEE
Confidence            8888887   55 4  3677788888888888887543  26777777765

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.76  E-value=1.1e-18  Score=146.12  Aligned_cols=179  Identities=19%  Similarity=0.166  Sum_probs=139.6

Q ss_pred             CCCCccCceecCccccCCCCCcEEecCCCcccCCCcchhh-----------------hcCCCCCCEEEcCCCcCCccccc
Q 038163            1 MSFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQS-----------------IGSFSSLNSLYLSSNNFTETVTI   63 (207)
Q Consensus         1 l~~n~~~~~~p~~~~~~l~~L~~L~ls~n~i~~~~~~~~~-----------------~~~l~~L~~L~l~~n~~~~~~~~   63 (207)
                      |++|.+.+..|   +..+++|++|++++|.+.   .++..                 ...+++|+.|++++|.+++..| 
T Consensus        65 Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~l~---~l~~~~~L~~L~L~~N~l~~~~~~~l~~L~~L~L~~N~l~~~~~-  137 (487)
T 3oja_A           65 LSSNVLYETLD---LESLSTLRTLDLNNNYVQ---ELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRD-  137 (487)
T ss_dssp             CTTSCCEEEEE---CTTCTTCCEEECCSSEEE---EEEECTTCCEEECCSSCCCCEEECCCSSCEEEECCSSCCCSGGG-
T ss_pred             eeCCCCCCCcc---cccCCCCCEEEecCCcCC---CCCCCCCcCEEECcCCcCCCCCccccCCCCEEECCCCCCCCCCc-
Confidence            57788886554   688888888888888872   22211                 1235778888888888888777 


Q ss_pred             chhcccCCCCccEEEcCCCCCChHHHHhhc-ccccc-----cCCcccceeccccccccCCCCCCCccceecccccccccC
Q 038163           64 TTQELHNFTNMEYLKLDDSPLHISLLQSIA-SIFPL-----LKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALN  137 (207)
Q Consensus        64 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~-~l~~L-----~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~  137 (207)
                        ..+..+++|++|++++|.+.+..+..+. .+++|     ++|.+++. +        ....+++|+.|+++  +|.++
T Consensus       138 --~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~--------~~~~l~~L~~L~Ls--~N~l~  204 (487)
T 3oja_A          138 --LDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K--------GQVVFAKLKTLDLS--SNKLA  204 (487)
T ss_dssp             --BCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E--------CCCCCTTCCEEECC--SSCCC
T ss_pred             --hhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-c--------ccccCCCCCEEECC--CCCCC
Confidence              6778899999999999999876665553 44444     88888775 3        34468999999999  99998


Q ss_pred             chhHHHHHhcCCCccEEEccCCccCcccccchhhhhcCCCCCceEEecCCcCC-CCccccccCCCCCccC
Q 038163          138 TSFLQIISESMSSLKYLSLSYYTLGINSSETLNQGLCSLVHLQELYIASNDLR-GSLPWCMANMTSLRIL  206 (207)
Q Consensus       138 ~~~~~~l~~~~~~L~~L~l~~n~~~~~~~i~~~~~~~~~~~L~~L~l~~n~l~-~~~p~~~~~l~~L~~l  206 (207)
                      +..+ .+. .+++|+.|++++|.++   .+ |. .+..+++|+.|++++|.+. +.+|..+..++.++.+
T Consensus       205 ~~~~-~~~-~l~~L~~L~Ls~N~l~---~l-p~-~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l  267 (487)
T 3oja_A          205 FMGP-EFQ-SAAGVTWISLRNNKLV---LI-EK-ALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTV  267 (487)
T ss_dssp             EECG-GGG-GGTTCSEEECTTSCCC---EE-CT-TCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHH
T ss_pred             CCCH-hHc-CCCCccEEEecCCcCc---cc-ch-hhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEE
Confidence            6444 477 8999999999999998   78 87 7889999999999999998 5677777777766543

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.76  E-value=6.3e-19  Score=149.81  Aligned_cols=83  Identities=20%  Similarity=0.146  Sum_probs=46.7

Q ss_pred             CCCCccceecccccccccCchhHHHHHhcCCCccEEEccCCccCcccccchhhhhcCCCCCceEEecCCcCCCCcc-ccc
Q 038163          119 PHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSLSYYTLGINSSETLNQGLCSLVHLQELYIASNDLRGSLP-WCM  197 (207)
Q Consensus       119 ~~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L~l~~n~~~~~~~i~~~~~~~~~~~L~~L~l~~n~l~~~~p-~~~  197 (207)
                      ..+++|++|+++  +|.+++..+..+. .+++|+.|++++|.++.-..+ |. .+..+++|+.|++++|++.+.+| ..+
T Consensus       350 ~~l~~L~~L~l~--~n~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~-~~-~~~~l~~L~~L~l~~N~l~~~~~~~~~  424 (562)
T 3a79_B          350 PSPSSFTFLNFT--QNVFTDSVFQGCS-TLKRLQTLILQRNGLKNFFKV-AL-MTKNMSSLETLDVSLNSLNSHAYDRTC  424 (562)
T ss_dssp             SSCCCCCEEECC--SSCCCTTTTTTCC-SCSSCCEEECCSSCCCBTTHH-HH-TTTTCTTCCEEECTTSCCBSCCSSCCC
T ss_pred             cCCCCceEEECC--CCccccchhhhhc-ccCCCCEEECCCCCcCCcccc-hh-hhcCCCCCCEEECCCCcCCCccChhhh
Confidence            344556666666  6666554555555 566666666666666500022 22 45666666666666666665344 335


Q ss_pred             cCCCCCccC
Q 038163          198 ANMTSLRIL  206 (207)
Q Consensus       198 ~~l~~L~~l  206 (207)
                      ..+++|+.|
T Consensus       425 ~~l~~L~~L  433 (562)
T 3a79_B          425 AWAESILVL  433 (562)
T ss_dssp             CCCTTCCEE
T ss_pred             cCcccCCEE
Confidence            556666554

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.76  E-value=2.6e-18  Score=128.23  Aligned_cols=169  Identities=17%  Similarity=0.127  Sum_probs=103.8

Q ss_pred             CCccCceecCccccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcCCC
Q 038163            3 FNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDDS   82 (207)
Q Consensus         3 ~n~~~~~~p~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~~~   82 (207)
                      ++.+. .+|...   .+++++|++++|.+  ....+..+..+++|++|++++|.++...+   ..+..+++|++|++++|
T Consensus        16 ~~~l~-~~p~~~---~~~l~~L~l~~n~l--~~~~~~~~~~l~~L~~L~l~~n~l~~~~~---~~~~~l~~L~~L~Ls~n   86 (208)
T 2o6s_A           16 SQGRT-SVPTGI---PAQTTYLDLETNSL--KSLPNGVFDELTSLTQLYLGGNKLQSLPN---GVFNKLTSLTYLNLSTN   86 (208)
T ss_dssp             SSCCS-SCCSCC---CTTCSEEECCSSCC--CCCCTTTTTTCTTCSEEECCSSCCCCCCT---TTTTTCTTCCEEECCSS
T ss_pred             CCCcc-CCCCCC---CCCCcEEEcCCCcc--CcCChhhhcccccCcEEECCCCccCccCh---hhcCCCCCcCEEECCCC
Confidence            44555 466443   46889999999999  44445567889999999999999987655   56778899999999999


Q ss_pred             CCChHHHHhhcccccc-----cCCcccceeccccccccCCCCCCCccceecccccccccCchhHHHHHhcCCCccEEEcc
Q 038163           83 PLHISLLQSIASIFPL-----LKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSLS  157 (207)
Q Consensus        83 ~~~~~~~~~l~~l~~L-----~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L~l~  157 (207)
                      .+....+..+..+++|     ++|.+++..+.       .+..+++|++|+++  +|.+++..+..+. .+++|+.|+++
T Consensus        87 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-------~~~~l~~L~~L~l~--~N~l~~~~~~~~~-~l~~L~~L~l~  156 (208)
T 2o6s_A           87 QLQSLPNGVFDKLTQLKELALNTNQLQSLPDG-------VFDKLTQLKDLRLY--QNQLKSVPDGVFD-RLTSLQYIWLH  156 (208)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT-------TTTTCTTCCEEECC--SSCCSCCCTTTTT-TCTTCCEEECC
T ss_pred             cCCccCHhHhcCccCCCEEEcCCCcCcccCHh-------HhccCCcCCEEECC--CCccceeCHHHhc-cCCCccEEEec
Confidence            8873322222333322     44555443332       35555666666666  6655543333344 55566666665


Q ss_pred             CCccCcccccchhhhhcCCCCCceEEecCCcCCCCccccccCCC
Q 038163          158 YYTLGINSSETLNQGLCSLVHLQELYIASNDLRGSLPWCMANMT  201 (207)
Q Consensus       158 ~n~~~~~~~i~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~  201 (207)
                      +|.+.  +.         +++|+.|+++.|.+.+.+|..++.++
T Consensus       157 ~N~~~--~~---------~~~l~~L~~~~n~~~g~ip~~~~~l~  189 (208)
T 2o6s_A          157 DNPWD--CT---------CPGIRYLSEWINKHSGVVRNSAGSVA  189 (208)
T ss_dssp             SCCBC--CC---------TTTTHHHHHHHHHCTTTBBCTTSSBC
T ss_pred             CCCee--cC---------CCCHHHHHHHHHhCCceeeccCcccc
Confidence            55544  11         23455555666666666666555543

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.75  E-value=2.1e-18  Score=146.27  Aligned_cols=166  Identities=19%  Similarity=0.237  Sum_probs=98.9

Q ss_pred             CCCCccCceecCccccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcC
Q 038163            1 MSFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLD   80 (207)
Q Consensus         1 l~~n~~~~~~p~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~   80 (207)
                      |++|.+.+ +++..|.++++|++|++++|.+  ....+..|..+++|++|++++|.++...|   ..+..+++|++|+++
T Consensus        35 Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~n~i--~~i~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~L~  108 (570)
T 2z63_A           35 LSFNPLRH-LGSYSFFSFPELQVLDLSRCEI--QTIEDGAYQSLSHLSTLILTGNPIQSLAL---GAFSGLSSLQKLVAV  108 (570)
T ss_dssp             CCSCCCCE-ECTTTTTTCSSCCEEECTTCCC--CEECTTTTTTCTTCCEEECTTCCCCEECT---TTTTTCTTCCEEECT
T ss_pred             ccCCccCc-cChhHhhCCCCceEEECCCCcC--CccCcccccCchhCCEEeCcCCcCCccCH---hhhcCcccccccccc
Confidence            45666663 4445567777777777777777  34444566777777777777777776655   566677777777777


Q ss_pred             CCCCChHHHHhhcccccc-----cCCcccc-eeccccccccCCCCCCCccceecccccccccCchhHHHHHhcCCCc---
Q 038163           81 DSPLHISLLQSIASIFPL-----LKNLSMI-GCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFLQIISESMSSL---  151 (207)
Q Consensus        81 ~~~~~~~~~~~l~~l~~L-----~~n~~~~-~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L---  151 (207)
                      +|.+.......++.+++|     ++|.+.+ .+|.       .+.++++|++|+++  +|.+++..+..+. .+++|   
T Consensus       109 ~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~-------~~~~l~~L~~L~l~--~n~l~~~~~~~~~-~l~~L~~~  178 (570)
T 2z63_A          109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPE-------YFSNLTNLEHLDLS--SNKIQSIYCTDLR-VLHQMPLL  178 (570)
T ss_dssp             TSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCG-------GGGGCTTCCEEECT--TSCCCEECGGGGH-HHHTCTTC
T ss_pred             ccccccCCCccccccccccEEecCCCccceecChh-------hhcccCCCCEEeCc--CCccceecHHHcc-chhccchh
Confidence            776653222223344333     5555554 2455       66667777777777  7766654444444 44444   


Q ss_pred             -cEEEccCCccCcccccchhhhhcCCCCCceEEecCC
Q 038163          152 -KYLSLSYYTLGINSSETLNQGLCSLVHLQELYIASN  187 (207)
Q Consensus       152 -~~L~l~~n~~~~~~~i~~~~~~~~~~~L~~L~l~~n  187 (207)
                       +.+++++|.+.   .+ +...+... +|+.|++++|
T Consensus       179 ~~~L~l~~n~l~---~~-~~~~~~~~-~L~~L~l~~n  210 (570)
T 2z63_A          179 NLSLDLSLNPMN---FI-QPGAFKEI-RLHKLTLRNN  210 (570)
T ss_dssp             CCEEECTTCCCC---EE-CTTTTTTC-EEEEEEEESC
T ss_pred             hhhcccCCCCce---ec-CHHHhccC-cceeEecccc
Confidence             66777777666   33 22133333 5666666655

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.75  E-value=1e-17  Score=126.34  Aligned_cols=148  Identities=15%  Similarity=0.146  Sum_probs=116.7

Q ss_pred             CCCccCceecCccccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcCC
Q 038163            2 SFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDD   81 (207)
Q Consensus         2 ~~n~~~~~~p~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~~   81 (207)
                      +++.+. .+|...   .+++++|++++|.+  ....+..|..+++|++|++++|.++...|   ..+..+++|++|++++
T Consensus        19 ~~~~l~-~iP~~l---~~~l~~L~l~~n~i--~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~---~~~~~l~~L~~L~Ls~   89 (220)
T 2v9t_B           19 RGKGLT-EIPTNL---PETITEIRLEQNTI--KVIPPGAFSPYKKLRRIDLSNNQISELAP---DAFQGLRSLNSLVLYG   89 (220)
T ss_dssp             TTSCCS-SCCSSC---CTTCCEEECCSSCC--CEECTTSSTTCTTCCEEECCSSCCCEECT---TTTTTCSSCCEEECCS
T ss_pred             CCCCcC-cCCCcc---CcCCCEEECCCCcC--CCcCHhHhhCCCCCCEEECCCCcCCCcCH---HHhhCCcCCCEEECCC
Confidence            456666 577543   26788999999999  44444578889999999999999988777   7888889999999999


Q ss_pred             CCCChHHHHhhcccccccCCcccceeccccccccCCCCCCCccceecccccccccCchhHHHHHhcCCCccEEEccCCcc
Q 038163           82 SPLHISLLQSIASIFPLLKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSLSYYTL  161 (207)
Q Consensus        82 ~~~~~~~~~~l~~l~~L~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L~l~~n~~  161 (207)
                      |.+.                    .++..      .+..+++|+.|+++  +|.+++..+..+. .+++|+.|++++|.+
T Consensus        90 N~l~--------------------~l~~~------~f~~l~~L~~L~L~--~N~l~~~~~~~~~-~l~~L~~L~L~~N~l  140 (220)
T 2v9t_B           90 NKIT--------------------ELPKS------LFEGLFSLQLLLLN--ANKINCLRVDAFQ-DLHNLNLLSLYDNKL  140 (220)
T ss_dssp             SCCC--------------------CCCTT------TTTTCTTCCEEECC--SSCCCCCCTTTTT-TCTTCCEEECCSSCC
T ss_pred             CcCC--------------------ccCHh------HccCCCCCCEEECC--CCCCCEeCHHHcC-CCCCCCEEECCCCcC
Confidence            9886                    23331      56778899999999  9998876677777 888999999999999


Q ss_pred             CcccccchhhhhcCCCCCceEEecCCcCCC
Q 038163          162 GINSSETLNQGLCSLVHLQELYIASNDLRG  191 (207)
Q Consensus       162 ~~~~~i~~~~~~~~~~~L~~L~l~~n~l~~  191 (207)
                      +   .+ +...+..+++|+.|++++|++..
T Consensus       141 ~---~~-~~~~~~~l~~L~~L~L~~N~~~c  166 (220)
T 2v9t_B          141 Q---TI-AKGTFSPLRAIQTMHLAQNPFIC  166 (220)
T ss_dssp             S---CC-CTTTTTTCTTCCEEECCSSCEEC
T ss_pred             C---EE-CHHHHhCCCCCCEEEeCCCCcCC
Confidence            8   55 44368888999999999998753

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.75  E-value=1.7e-18  Score=147.13  Aligned_cols=89  Identities=18%  Similarity=0.184  Sum_probs=58.4

Q ss_pred             CCCCccCceecCccccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcC
Q 038163            1 MSFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLD   80 (207)
Q Consensus         1 l~~n~~~~~~p~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~   80 (207)
                      |++|.+.+ +|+..|.++++|++|++++|.+  ....|..|..+++|++|++++|.++. +|   ..  .+++|++|+++
T Consensus        59 Ls~N~i~~-~~~~~~~~l~~L~~L~Ls~N~l--~~~~~~~~~~l~~L~~L~Ls~N~l~~-lp---~~--~l~~L~~L~Ls  129 (562)
T 3a79_B           59 LSQNSISE-LRMPDISFLSELRVLRLSHNRI--RSLDFHVFLFNQDLEYLDVSHNRLQN-IS---CC--PMASLRHLDLS  129 (562)
T ss_dssp             CCSSCCCC-CCGGGTTTCTTCCEEECCSCCC--CEECTTTTTTCTTCCEEECTTSCCCE-EC---SC--CCTTCSEEECC
T ss_pred             CCCCCccc-cChhhhccCCCccEEECCCCCC--CcCCHHHhCCCCCCCEEECCCCcCCc-cC---cc--ccccCCEEECC
Confidence            46677764 4555677788888888888877  44456677777778888887777774 44   23  67777777777


Q ss_pred             CCCCCh-HHHHhhcccccc
Q 038163           81 DSPLHI-SLLQSIASIFPL   98 (207)
Q Consensus        81 ~~~~~~-~~~~~l~~l~~L   98 (207)
                      +|.+.. ..+..++.+++|
T Consensus       130 ~N~l~~l~~p~~~~~l~~L  148 (562)
T 3a79_B          130 FNDFDVLPVCKEFGNLTKL  148 (562)
T ss_dssp             SSCCSBCCCCGGGGGCTTC
T ss_pred             CCCccccCchHhhcccCcc
Confidence            777664 223444444444

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.75  E-value=2.7e-18  Score=136.12  Aligned_cols=179  Identities=18%  Similarity=0.176  Sum_probs=137.9

Q ss_pred             CCCCccCceecCccccCCCCCcEEecCCCcccCCCcchh-----------------hhcCCCCCCEEEcCCCcCCccccc
Q 038163            1 MSFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQ-----------------SIGSFSSLNSLYLSSNNFTETVTI   63 (207)
Q Consensus         1 l~~n~~~~~~p~~~~~~l~~L~~L~ls~n~i~~~~~~~~-----------------~~~~l~~L~~L~l~~n~~~~~~~~   63 (207)
                      |++|.+.+..|   +..+++|++|++++|.++   .++.                 ....+++|++|++++|.+++..+ 
T Consensus        65 Ls~n~l~~~~~---~~~l~~L~~L~Ls~n~l~---~l~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~N~l~~~~~-  137 (317)
T 3o53_A           65 LSSNVLYETLD---LESLSTLRTLDLNNNYVQ---ELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRD-  137 (317)
T ss_dssp             CTTSCCEEEEE---ETTCTTCCEEECCSSEEE---EEEECTTCCEEECCSSCCSEEEECCCSSCEEEECCSSCCCSGGG-
T ss_pred             CCCCcCCcchh---hhhcCCCCEEECcCCccc---cccCCCCcCEEECCCCccCCcCccccCCCCEEECCCCCCCCccc-
Confidence            56788876543   688888888888888872   2211                 01235678888888888887766 


Q ss_pred             chhcccCCCCccEEEcCCCCCChHHHHhh----cccccc--cCCcccceeccccccccCCCCCCCccceecccccccccC
Q 038163           64 TTQELHNFTNMEYLKLDDSPLHISLLQSI----ASIFPL--LKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALN  137 (207)
Q Consensus        64 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~l----~~l~~L--~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~  137 (207)
                        ..+..+++|++|++++|.+....+..+    ..++.|  ++|.+++. +        ....+++|+.|+++  +|.++
T Consensus       138 --~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~--------~~~~l~~L~~L~Ls--~N~l~  204 (317)
T 3o53_A          138 --LDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K--------GQVVFAKLKTLDLS--SNKLA  204 (317)
T ss_dssp             --BCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E--------CCCCCTTCCEEECC--SSCCC
T ss_pred             --hhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-c--------cccccccCCEEECC--CCcCC
Confidence              577788999999999999986544443    344444  88888764 3        34458999999999  99998


Q ss_pred             chhHHHHHhcCCCccEEEccCCccCcccccchhhhhcCCCCCceEEecCCcCC-CCccccccCCCCCccC
Q 038163          138 TSFLQIISESMSSLKYLSLSYYTLGINSSETLNQGLCSLVHLQELYIASNDLR-GSLPWCMANMTSLRIL  206 (207)
Q Consensus       138 ~~~~~~l~~~~~~L~~L~l~~n~~~~~~~i~~~~~~~~~~~L~~L~l~~n~l~-~~~p~~~~~l~~L~~l  206 (207)
                      +. +..+. .+++|+.|++++|.++   .+ |. .+..+++|+.|++++|++. +.+|..+..+++|+.+
T Consensus       205 ~l-~~~~~-~l~~L~~L~L~~N~l~---~l-~~-~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l  267 (317)
T 3o53_A          205 FM-GPEFQ-SAAGVTWISLRNNKLV---LI-EK-ALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTV  267 (317)
T ss_dssp             EE-CGGGG-GGTTCSEEECTTSCCC---EE-CT-TCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHH
T ss_pred             cc-hhhhc-ccCcccEEECcCCccc---ch-hh-HhhcCCCCCEEEccCCCccCcCHHHHHhccccceEE
Confidence            54 44477 8999999999999998   78 87 7889999999999999998 6777888888877654

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.74  E-value=3.4e-17  Score=130.96  Aligned_cols=167  Identities=19%  Similarity=0.286  Sum_probs=106.3

Q ss_pred             ccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccc-----------------hhcccCCCCccEE
Q 038163           15 YNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTIT-----------------TQELHNFTNMEYL   77 (207)
Q Consensus        15 ~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~-----------------~~~l~~l~~L~~L   77 (207)
                      +..+++|++|++++|.+   ..++. +..+++|++|++++|.+.+..+..                 ...+..+++|++|
T Consensus       151 ~~~l~~L~~L~l~~~~~---~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L  226 (347)
T 4fmz_A          151 LSNMTGLNYLTVTESKV---KDVTP-IANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITPVANMTRLNSL  226 (347)
T ss_dssp             GTTCTTCCEEECCSSCC---CCCGG-GGGCTTCSEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCCEE
T ss_pred             hhhCCCCcEEEecCCCc---CCchh-hccCCCCCEEEccCCcccccccccCCCccceeecccCCCCCCchhhcCCcCCEE
Confidence            45666666666666665   22222 555566666666666555431100                 0114455566666


Q ss_pred             EcCCCCCChHHHHhhcccccc-----cCCcccceeccccccccCCCCCCCccceecccccccccCchhHHHHHhcCCCcc
Q 038163           78 KLDDSPLHISLLQSIASIFPL-----LKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLK  152 (207)
Q Consensus        78 ~l~~~~~~~~~~~~l~~l~~L-----~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~  152 (207)
                      ++++|.+....+  +..+++|     ++|.+++.  .       .+..+++|++|+++  +|.+++.  ..+. .+++|+
T Consensus       227 ~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~-------~~~~l~~L~~L~l~--~n~l~~~--~~~~-~l~~L~  290 (347)
T 4fmz_A          227 KIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--N-------AVKDLTKLKMLNVG--SNQISDI--SVLN-NLSQLN  290 (347)
T ss_dssp             ECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--G-------GGTTCTTCCEEECC--SSCCCCC--GGGG-GCTTCS
T ss_pred             EccCCccCCCcc--hhcCCCCCEEECCCCccCCC--h-------hHhcCCCcCEEEcc--CCccCCC--hhhc-CCCCCC
Confidence            666666553221  3333333     55555442  2       57778899999999  8888753  3456 788999


Q ss_pred             EEEccCCccCcccccchhhhhcCCCCCceEEecCCcCCCCccccccCCCCCccCC
Q 038163          153 YLSLSYYTLGINSSETLNQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILD  207 (207)
Q Consensus       153 ~L~l~~n~~~~~~~i~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~  207 (207)
                      .|++++|.+.  +.. +. .+..+++|+.|++++|++.+..|  +..+++|+.+|
T Consensus       291 ~L~L~~n~l~--~~~-~~-~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~  339 (347)
T 4fmz_A          291 SLFLNNNQLG--NED-ME-VIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSAD  339 (347)
T ss_dssp             EEECCSSCCC--GGG-HH-HHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEES
T ss_pred             EEECcCCcCC--CcC-hh-HhhccccCCEEEccCCccccccC--hhhhhccceee
Confidence            9999999998  444 55 78889999999999999987655  77788888764

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.74  E-value=1.1e-18  Score=141.89  Aligned_cols=84  Identities=19%  Similarity=0.297  Sum_probs=58.6

Q ss_pred             CCCCCCccceecccccccccC----chhHHHHHhcCCCccEEEccCCccCcccc----cchhhhh--cCCCCCceEEecC
Q 038163          117 DFPHSKSLEHLDMEFMRIALN----TSFLQIISESMSSLKYLSLSYYTLGINSS----ETLNQGL--CSLVHLQELYIAS  186 (207)
Q Consensus       117 ~~~~~~~L~~L~l~~~~n~~~----~~~~~~l~~~~~~L~~L~l~~n~~~~~~~----i~~~~~~--~~~~~L~~L~l~~  186 (207)
                      .+..+++|+.|+++  +|.++    ..++..+. .+++|+.|++++|.++  +.    + +. .+  ..+++|+.|++++
T Consensus       211 ~l~~~~~L~~L~Ls--~n~l~~~g~~~l~~~l~-~~~~L~~L~L~~n~i~--~~~~~~l-~~-~l~~~~~~~L~~L~L~~  283 (386)
T 2ca6_A          211 GLAYCQELKVLDLQ--DNTFTHLGSSALAIALK-SWPNLRELGLNDCLLS--ARGAAAV-VD-AFSKLENIGLQTLRLQY  283 (386)
T ss_dssp             TGGGCTTCCEEECC--SSCCHHHHHHHHHHHGG-GCTTCCEEECTTCCCC--HHHHHHH-HH-HHHTCSSCCCCEEECCS
T ss_pred             HhhcCCCccEEECc--CCCCCcHHHHHHHHHHc-cCCCcCEEECCCCCCc--hhhHHHH-HH-HHhhccCCCeEEEECcC
Confidence            55677788888888  88875    34566666 7788888888888877  33    3 33 44  3378888888888


Q ss_pred             CcCCC----Cccccc-cCCCCCccCC
Q 038163          187 NDLRG----SLPWCM-ANMTSLRILD  207 (207)
Q Consensus       187 n~l~~----~~p~~~-~~l~~L~~l~  207 (207)
                      |.+.+    .+|..+ .++++|+.|+
T Consensus       284 n~i~~~g~~~l~~~l~~~l~~L~~L~  309 (386)
T 2ca6_A          284 NEIELDAVRTLKTVIDEKMPDLLFLE  309 (386)
T ss_dssp             SCCBHHHHHHHHHHHHHHCTTCCEEE
T ss_pred             CcCCHHHHHHHHHHHHhcCCCceEEE
Confidence            88876    366655 5577777653

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.74  E-value=4.5e-17  Score=123.47  Aligned_cols=148  Identities=20%  Similarity=0.131  Sum_probs=116.5

Q ss_pred             CCccCceecCccccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcCCC
Q 038163            3 FNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDDS   82 (207)
Q Consensus         3 ~n~~~~~~p~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~~~   82 (207)
                      ++.+. .+|...   .+++++|++++|.+  ....+..+..+++|++|++++|.++...+   ..+..+++|++|++++|
T Consensus        28 ~~~l~-~ip~~~---~~~L~~L~Ls~n~i--~~~~~~~~~~l~~L~~L~L~~N~l~~i~~---~~~~~l~~L~~L~Ls~N   98 (229)
T 3e6j_A           28 SKRHA-SVPAGI---PTNAQILYLHDNQI--TKLEPGVFDSLINLKELYLGSNQLGALPV---GVFDSLTQLTVLDLGTN   98 (229)
T ss_dssp             TSCCS-SCCSCC---CTTCSEEECCSSCC--CCCCTTTTTTCTTCCEEECCSSCCCCCCT---TTTTTCTTCCEEECCSS
T ss_pred             CCCcC-ccCCCC---CCCCCEEEcCCCcc--CccCHHHhhCccCCcEEECCCCCCCCcCh---hhcccCCCcCEEECCCC
Confidence            44454 577543   37788899999988  45567778888899999999998877655   55678888999999888


Q ss_pred             CCChHHHHhhcccccccCCcccceeccccccccCCCCCCCccceecccccccccCchhHHHHHhcCCCccEEEccCCccC
Q 038163           83 PLHISLLQSIASIFPLLKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSLSYYTLG  162 (207)
Q Consensus        83 ~~~~~~~~~l~~l~~L~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L~l~~n~~~  162 (207)
                      .++                    .++..      .+..+++|+.|+++  +|.++ .+|..+. .+++|+.|++++|.++
T Consensus        99 ~l~--------------------~l~~~------~~~~l~~L~~L~Ls--~N~l~-~lp~~~~-~l~~L~~L~L~~N~l~  148 (229)
T 3e6j_A           99 QLT--------------------VLPSA------VFDRLVHLKELFMC--CNKLT-ELPRGIE-RLTHLTHLALDQNQLK  148 (229)
T ss_dssp             CCC--------------------CCCTT------TTTTCTTCCEEECC--SSCCC-SCCTTGG-GCTTCSEEECCSSCCC
T ss_pred             cCC--------------------ccChh------HhCcchhhCeEecc--CCccc-ccCcccc-cCCCCCEEECCCCcCC
Confidence            876                    22221      56788999999999  99998 6677777 8999999999999998


Q ss_pred             cccccchhhhhcCCCCCceEEecCCcCCCCc
Q 038163          163 INSSETLNQGLCSLVHLQELYIASNDLRGSL  193 (207)
Q Consensus       163 ~~~~i~~~~~~~~~~~L~~L~l~~n~l~~~~  193 (207)
                         .+ +...+..+++|+.|++++|.+....
T Consensus       149 ---~~-~~~~~~~l~~L~~L~l~~N~~~c~c  175 (229)
T 3e6j_A          149 ---SI-PHGAFDRLSSLTHAYLFGNPWDCEC  175 (229)
T ss_dssp             ---CC-CTTTTTTCTTCCEEECTTSCBCTTB
T ss_pred             ---cc-CHHHHhCCCCCCEEEeeCCCccCCc
Confidence               66 5437888999999999999987653

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.73  E-value=2.3e-17  Score=124.30  Aligned_cols=150  Identities=15%  Similarity=0.116  Sum_probs=108.8

Q ss_pred             CCCCccCceecCccccCCCCCcEEecCCCcccCCCcch-hhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEc
Q 038163            1 MSFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLL-QSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKL   79 (207)
Q Consensus         1 l~~n~~~~~~p~~~~~~l~~L~~L~ls~n~i~~~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l   79 (207)
                      +++|.+. .+|..+   ...+++|++++|.+  ....+ ..|..+++|++|++++|.+++..+   ..+..+++|++|++
T Consensus        18 ~s~n~l~-~iP~~~---~~~~~~L~L~~N~l--~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~---~~~~~l~~L~~L~L   88 (220)
T 2v70_A           18 CSNQKLN-KIPEHI---PQYTAELRLNNNEF--TVLEATGIFKKLPQLRKINFSNNKITDIEE---GAFEGASGVNEILL   88 (220)
T ss_dssp             CCSSCCS-SCCSCC---CTTCSEEECCSSCC--CEECCCCCGGGCTTCCEEECCSSCCCEECT---TTTTTCTTCCEEEC
T ss_pred             eCCCCcc-cCccCC---CCCCCEEEcCCCcC--CccCchhhhccCCCCCEEECCCCcCCEECH---HHhCCCCCCCEEEC
Confidence            3566776 477543   34567888888888  33323 347788888888888888887766   67888888888888


Q ss_pred             CCCCCChHHHHhhcccccccCCcccceeccccccccCCCCCCCccceecccccccccCchhHHHHHhcCCCccEEEccCC
Q 038163           80 DDSPLHISLLQSIASIFPLLKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSLSYY  159 (207)
Q Consensus        80 ~~~~~~~~~~~~l~~l~~L~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L~l~~n  159 (207)
                      ++|.+...                   .+.       .+..+++|++|+++  +|.+++..+..+. .+++|+.|++++|
T Consensus        89 s~N~l~~~-------------------~~~-------~~~~l~~L~~L~Ls--~N~l~~~~~~~~~-~l~~L~~L~L~~N  139 (220)
T 2v70_A           89 TSNRLENV-------------------QHK-------MFKGLESLKTLMLR--SNRITCVGNDSFI-GLSSVRLLSLYDN  139 (220)
T ss_dssp             CSSCCCCC-------------------CGG-------GGTTCSSCCEEECT--TSCCCCBCTTSST-TCTTCSEEECTTS
T ss_pred             CCCccCcc-------------------CHh-------HhcCCcCCCEEECC--CCcCCeECHhHcC-CCccCCEEECCCC
Confidence            88887622                   222       56677788888888  8888766666666 7788888888888


Q ss_pred             ccCcccccchhhhhcCCCCCceEEecCCcCCCC
Q 038163          160 TLGINSSETLNQGLCSLVHLQELYIASNDLRGS  192 (207)
Q Consensus       160 ~~~~~~~i~~~~~~~~~~~L~~L~l~~n~l~~~  192 (207)
                      .++  +.. |. .+..+++|+.|++++|.+..+
T Consensus       140 ~l~--~~~-~~-~~~~l~~L~~L~L~~N~l~c~  168 (220)
T 2v70_A          140 QIT--TVA-PG-AFDTLHSLSTLNLLANPFNCN  168 (220)
T ss_dssp             CCC--CBC-TT-TTTTCTTCCEEECCSCCEECS
T ss_pred             cCC--EEC-HH-HhcCCCCCCEEEecCcCCcCC
Confidence            887  333 44 777788888888888877644

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.73  E-value=5.3e-18  Score=150.46  Aligned_cols=188  Identities=22%  Similarity=0.265  Sum_probs=131.5

Q ss_pred             CCCCccCceecC-ccccCCCCCcEEecCCCcccCCCc-chhhhcCCCCCCEEEcCCCcCCcccccchhcccCC--C----
Q 038163            1 MSFNEINNLVVP-QGYNGLRKLKSLDLSGVGVRDGSK-LLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNF--T----   72 (207)
Q Consensus         1 l~~n~~~~~~p~-~~~~~l~~L~~L~ls~n~i~~~~~-~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l--~----   72 (207)
                      |++|.+.+.+|. .+|..+++|++|++++|.+  ... .+..+.++++|++|++++|.+++..+   ..+..+  +    
T Consensus       104 Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l--~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~---~~l~~l~~~~L~~  178 (844)
T 3j0a_A          104 LYFCGLSDAVLKDGYFRNLKALTRLDLSKNQI--RSLYLHPSFGKLNSLKSIDFSSNQIFLVCE---HELEPLQGKTLSF  178 (844)
T ss_dssp             CTTCCCSSCCSTTCCCSSCSSCCEEEEESCCC--CCCCCCGGGGTCSSCCEEEEESSCCCCCCS---GGGHHHHHCSSCC
T ss_pred             CcCCCCCcccccCccccccCCCCEEECCCCcc--cccccchhHhhCCCCCEEECCCCcCCeeCH---HHcccccCCccce
Confidence            578888876654 3578999999999999999  343 34678999999999999998877655   222211  2    


Q ss_pred             --------------------------CccEEEcCCCCCChHHHHhhc---------------------------------
Q 038163           73 --------------------------NMEYLKLDDSPLHISLLQSIA---------------------------------   93 (207)
Q Consensus        73 --------------------------~L~~L~l~~~~~~~~~~~~l~---------------------------------   93 (207)
                                                .|++|++++|.+.+..+..+.                                 
T Consensus       179 L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~  258 (844)
T 3j0a_A          179 FSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQN  258 (844)
T ss_dssp             CEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGT
T ss_pred             EECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChh
Confidence                                      267777777755433322221                                 


Q ss_pred             --------ccccc--cCCcccceeccccccccCCCCCCCccceecccccccccCchhHHHHHhcCCCccEEEccCCccCc
Q 038163           94 --------SIFPL--LKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSLSYYTLGI  163 (207)
Q Consensus        94 --------~l~~L--~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L~l~~n~~~~  163 (207)
                              .++.|  ++|.+.+..+.       .+..+++|+.|+++  +|.+++..+..+. .+++|+.|++++|.+. 
T Consensus       259 ~f~~l~~~~L~~L~Ls~n~l~~~~~~-------~~~~l~~L~~L~L~--~n~i~~~~~~~~~-~l~~L~~L~Ls~N~l~-  327 (844)
T 3j0a_A          259 TFAGLARSSVRHLDLSHGFVFSLNSR-------VFETLKDLKVLNLA--YNKINKIADEAFY-GLDNLQVLNLSYNLLG-  327 (844)
T ss_dssp             TTTTTTTSCCCEEECTTCCCCEECSC-------CSSSCCCCCEEEEE--SCCCCEECTTTTT-TCSSCCEEEEESCCCS-
T ss_pred             hhhccccCCccEEECCCCcccccChh-------hhhcCCCCCEEECC--CCcCCCCChHHhc-CCCCCCEEECCCCCCC-
Confidence                    11111  44444443343       67778888888888  8888766666777 7888888888888887 


Q ss_pred             ccccchhhhhcCCCCCceEEecCCcCCCCccccccCCCCCccCC
Q 038163          164 NSSETLNQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILD  207 (207)
Q Consensus       164 ~~~i~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~  207 (207)
                       +.. +. .+..+++|+.|++++|.+.+..+..+..+++|+.|+
T Consensus       328 -~~~-~~-~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~  368 (844)
T 3j0a_A          328 -ELY-SS-NFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLD  368 (844)
T ss_dssp             -CCC-SC-SCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEE
T ss_pred             -ccC-HH-HhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEE
Confidence             343 44 788888888888888888776667788888887663

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.73  E-value=3.1e-17  Score=121.49  Aligned_cols=146  Identities=19%  Similarity=0.283  Sum_probs=112.8

Q ss_pred             cCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcCCCCCChHHHHhhccc
Q 038163           16 NGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDDSPLHISLLQSIASI   95 (207)
Q Consensus        16 ~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l   95 (207)
                      ..++++++|++++|.+   ..+| .+..+++|++|++++|.++..     ..+..+++|++|++++|.+.+..       
T Consensus        41 ~~l~~L~~L~l~~n~i---~~l~-~l~~l~~L~~L~l~~n~~~~~-----~~l~~l~~L~~L~l~~n~l~~~~-------  104 (197)
T 4ezg_A           41 AQMNSLTYITLANINV---TDLT-GIEYAHNIKDLTINNIHATNY-----NPISGLSNLERLRIMGKDVTSDK-------  104 (197)
T ss_dssp             HHHHTCCEEEEESSCC---SCCT-TGGGCTTCSEEEEESCCCSCC-----GGGTTCTTCCEEEEECTTCBGGG-------
T ss_pred             hhcCCccEEeccCCCc---cChH-HHhcCCCCCEEEccCCCCCcc-----hhhhcCCCCCEEEeECCccCccc-------
Confidence            5678899999999999   4556 688899999999999976643     46788999999999999987432       


Q ss_pred             ccccCCcccceeccccccccCCCCCCCccceecccccccccCchhHHHHHhcCCCccEEEccCCc-cCcccccchhhhhc
Q 038163           96 FPLLKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSLSYYT-LGINSSETLNQGLC  174 (207)
Q Consensus        96 ~~L~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L~l~~n~-~~~~~~i~~~~~~~  174 (207)
                                  +.       .+..+++|++|+++  +|.+++..+..+. .+++|+.|++++|. ++   .+ +  .+.
T Consensus       105 ------------~~-------~l~~l~~L~~L~Ls--~n~i~~~~~~~l~-~l~~L~~L~L~~n~~i~---~~-~--~l~  156 (197)
T 4ezg_A          105 ------------IP-------NLSGLTSLTLLDIS--HSAHDDSILTKIN-TLPKVNSIDLSYNGAIT---DI-M--PLK  156 (197)
T ss_dssp             ------------SC-------CCTTCTTCCEEECC--SSBCBGGGHHHHT-TCSSCCEEECCSCTBCC---CC-G--GGG
T ss_pred             ------------Ch-------hhcCCCCCCEEEec--CCccCcHhHHHHh-hCCCCCEEEccCCCCcc---cc-H--hhc
Confidence                        33       66677788888888  8888776777777 78888888888887 55   66 4  477


Q ss_pred             CCCCCceEEecCCcCCCCccccccCCCCCccCC
Q 038163          175 SLVHLQELYIASNDLRGSLPWCMANMTSLRILD  207 (207)
Q Consensus       175 ~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~  207 (207)
                      .+++|+.|++++|++.+ ++ .+..+++|+.|+
T Consensus       157 ~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~  187 (197)
T 4ezg_A          157 TLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLY  187 (197)
T ss_dssp             GCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEE
T ss_pred             CCCCCCEEECCCCCCcC-hH-HhccCCCCCEEE
Confidence            78888888888888875 33 567777777653

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.73  E-value=2e-17  Score=133.51  Aligned_cols=166  Identities=21%  Similarity=0.198  Sum_probs=101.3

Q ss_pred             CCCccCceecCccccCCCCCcEEecCCCcccCCCcchhhhc-CCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcC
Q 038163            2 SFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIG-SFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLD   80 (207)
Q Consensus         2 ~~n~~~~~~p~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~-~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~   80 (207)
                      +++.+. .+|...   ...++.|++++|.+  ....+..+. .+++|++|++++|.++...+   ..+..+++|++|+|+
T Consensus        26 ~~~~l~-~iP~~~---~~~l~~L~Ls~N~l--~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~---~~~~~l~~L~~L~Ls   96 (361)
T 2xot_A           26 SKQQLP-NVPQSL---PSYTALLDLSHNNL--SRLRAEWTPTRLTNLHSLLLSHNHLNFISS---EAFVPVPNLRYLDLS   96 (361)
T ss_dssp             CSSCCS-SCCSSC---CTTCSEEECCSSCC--CEECTTSSSSCCTTCCEEECCSSCCCEECT---TTTTTCTTCCEEECC
T ss_pred             CCCCcC-ccCccC---CCCCCEEECCCCCC--CccChhhhhhcccccCEEECCCCcCCccCh---hhccCCCCCCEEECC
Confidence            456666 467543   24578899999988  344444565 78899999999998888776   678888889999999


Q ss_pred             CCCCChHHHHhhcccccc-----cCCcccceeccccccccCCCCCCCccceecccccccccCchhHHHH---HhcCCCcc
Q 038163           81 DSPLHISLLQSIASIFPL-----LKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFLQII---SESMSSLK  152 (207)
Q Consensus        81 ~~~~~~~~~~~l~~l~~L-----~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~~~~~l---~~~~~~L~  152 (207)
                      +|.+....+..+..+++|     ++|.+....+.       .+..+++|+.|+++  +|.++...+..+   . .+++|+
T Consensus        97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~-------~~~~l~~L~~L~L~--~N~l~~l~~~~~~~~~-~l~~L~  166 (361)
T 2xot_A           97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRN-------AFEDMAQLQKLYLS--QNQISRFPVELIKDGN-KLPKLM  166 (361)
T ss_dssp             SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTT-------TTTTCTTCCEEECC--SSCCCSCCGGGTC-----CTTCC
T ss_pred             CCcCCcCCHHHhCCCcCCCEEECCCCcccEECHH-------HhCCcccCCEEECC--CCcCCeeCHHHhcCcc-cCCcCC
Confidence            988874322233333333     55555544444       55566666666666  666553222222   3 455666


Q ss_pred             EEEccCCccCcccccchhhhhcCCCC--CceEEecCCcCC
Q 038163          153 YLSLSYYTLGINSSETLNQGLCSLVH--LQELYIASNDLR  190 (207)
Q Consensus       153 ~L~l~~n~~~~~~~i~~~~~~~~~~~--L~~L~l~~n~l~  190 (207)
                      .|++++|.+.   .+ +...+..++.  ++.|++++|.+.
T Consensus       167 ~L~L~~N~l~---~l-~~~~~~~l~~~~l~~l~l~~N~~~  202 (361)
T 2xot_A          167 LLDLSSNKLK---KL-PLTDLQKLPAWVKNGLYLHNNPLE  202 (361)
T ss_dssp             EEECCSSCCC---CC-CHHHHHHSCHHHHTTEECCSSCEE
T ss_pred             EEECCCCCCC---cc-CHHHhhhccHhhcceEEecCCCcc
Confidence            6666666665   44 3324555554  255666666654

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.73  E-value=1.6e-17  Score=142.15  Aligned_cols=161  Identities=19%  Similarity=0.151  Sum_probs=101.3

Q ss_pred             eecCccccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcCCCCCChHH
Q 038163            9 LVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDDSPLHISL   88 (207)
Q Consensus         9 ~~p~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~   88 (207)
                      .||+.. .  .++++|||++|.|  ....+..|..+++|++|++++|.++...+   ..+..+++|++|+|++|.++...
T Consensus        45 ~vP~~l-p--~~~~~LdLs~N~i--~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~---~~f~~L~~L~~L~Ls~N~l~~l~  116 (635)
T 4g8a_A           45 KIPDNL-P--FSTKNLDLSFNPL--RHLGSYSFFSFPELQVLDLSRCEIQTIED---GAYQSLSHLSTLILTGNPIQSLA  116 (635)
T ss_dssp             SCCSSS-C--TTCCEEECTTSCC--CEECTTTTTTCTTCCEEECTTCCCCEECT---TTTTTCTTCCEEECTTCCCCEEC
T ss_pred             ccCCCC-C--cCCCEEEeeCCCC--CCCCHHHHhCCCCCCEEECCCCcCCCcCh---hHhcCCCCCCEEEccCCcCCCCC
Confidence            466442 1  4688999999999  34445678899999999999999988777   67888999999999999887433


Q ss_pred             HHhhcccccc-----cCCcccceeccccccccCCCCCCCccceecccccccccCc-hhHHHHHhcCCCccEEEccCCccC
Q 038163           89 LQSIASIFPL-----LKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNT-SFLQIISESMSSLKYLSLSYYTLG  162 (207)
Q Consensus        89 ~~~l~~l~~L-----~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~-~~~~~l~~~~~~L~~L~l~~n~~~  162 (207)
                      +..+..+++|     .+|.+++..+.       .++++++|++|+++  +|.++. ..+..+. .++.|+.|++++|.++
T Consensus       117 ~~~f~~L~~L~~L~Ls~N~l~~l~~~-------~~~~L~~L~~L~Ls--~N~l~~~~~~~~~~-~l~~L~~L~L~~N~l~  186 (635)
T 4g8a_A          117 LGAFSGLSSLQKLVAVETNLASLENF-------PIGHLKTLKELNVA--HNLIQSFKLPEYFS-NLTNLEHLDLSSNKIQ  186 (635)
T ss_dssp             GGGGTTCTTCCEEECTTSCCCCSTTC-------CCTTCTTCCEEECC--SSCCCCCCCCGGGG-GCTTCCEEECCSSCCC
T ss_pred             HHHhcCCCCCCEEECCCCcCCCCChh-------hhhcCcccCeeccc--cCccccCCCchhhc-cchhhhhhcccCcccc
Confidence            3333333333     55555543333       46666666666666  666543 2344445 5666666666666665


Q ss_pred             cccccchhhhhcCCCC----CceEEecCCcCCC
Q 038163          163 INSSETLNQGLCSLVH----LQELYIASNDLRG  191 (207)
Q Consensus       163 ~~~~i~~~~~~~~~~~----L~~L~l~~n~l~~  191 (207)
                         .+.+. .+..+.+    ...++++.|.+..
T Consensus       187 ---~~~~~-~l~~L~~l~~~~~~~~ls~n~l~~  215 (635)
T 4g8a_A          187 ---SIYCT-DLRVLHQMPLLNLSLDLSLNPMNF  215 (635)
T ss_dssp             ---EECGG-GGHHHHTCTTCCCEEECTTCCCCE
T ss_pred             ---ccccc-cccchhhhhhhhhhhhcccCcccc
Confidence               33022 3333322    2355666666553

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.73  E-value=2.8e-18  Score=136.68  Aligned_cols=175  Identities=14%  Similarity=0.078  Sum_probs=140.1

Q ss_pred             cccCC--CCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcc-cccchhcccCCCCccEEEcCCCCCChHHHH
Q 038163           14 GYNGL--RKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTET-VTITTQELHNFTNMEYLKLDDSPLHISLLQ   90 (207)
Q Consensus        14 ~~~~l--~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~-~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~   90 (207)
                      .+..+  ++++.|++++|.+  ....+ .+..+++|++|++++|.+++. .+   ..+..+++|++|++++|.+.+..+.
T Consensus        63 ~~~~~~~~~l~~L~l~~n~l--~~~~~-~~~~~~~L~~L~L~~~~l~~~~~~---~~~~~~~~L~~L~L~~~~l~~~~~~  136 (336)
T 2ast_B           63 VTGRLLSQGVIAFRCPRSFM--DQPLA-EHFSPFRVQHMDLSNSVIEVSTLH---GILSQCSKLQNLSLEGLRLSDPIVN  136 (336)
T ss_dssp             HHHHHHHTTCSEEECTTCEE--CSCCC-SCCCCBCCCEEECTTCEECHHHHH---HHHTTBCCCSEEECTTCBCCHHHHH
T ss_pred             HHHhhhhccceEEEcCCccc--cccch-hhccCCCCCEEEccCCCcCHHHHH---HHHhhCCCCCEEeCcCcccCHHHHH
Confidence            34555  8899999999999  34444 466799999999999998865 66   6788899999999999999988888


Q ss_pred             hhcccccc-----cCC-cccce-eccccccccCCCCCCCccceeccccccc-ccCch-hHHHHHhcCC-CccEEEccCCc
Q 038163           91 SIASIFPL-----LKN-LSMIG-CEVNGVIRGQDFPHSKSLEHLDMEFMRI-ALNTS-FLQIISESMS-SLKYLSLSYYT  160 (207)
Q Consensus        91 ~l~~l~~L-----~~n-~~~~~-~~~~~~~~~~~~~~~~~L~~L~l~~~~n-~~~~~-~~~~l~~~~~-~L~~L~l~~n~  160 (207)
                      .+..+++|     .+| .+++. ++.       .+..+++|++|+++  +| .+++. ++..+. .++ +|++|++++|.
T Consensus       137 ~l~~~~~L~~L~L~~~~~l~~~~l~~-------~~~~~~~L~~L~l~--~~~~l~~~~~~~~~~-~l~~~L~~L~l~~~~  206 (336)
T 2ast_B          137 TLAKNSNLVRLNLSGCSGFSEFALQT-------LLSSCSRLDELNLS--WCFDFTEKHVQVAVA-HVSETITQLNLSGYR  206 (336)
T ss_dssp             HHTTCTTCSEEECTTCBSCCHHHHHH-------HHHHCTTCCEEECC--CCTTCCHHHHHHHHH-HSCTTCCEEECCSCG
T ss_pred             HHhcCCCCCEEECCCCCCCCHHHHHH-------HHhcCCCCCEEcCC--CCCCcChHHHHHHHH-hcccCCCEEEeCCCc
Confidence            87777766     666 55542 444       56778999999999  99 88865 466677 899 99999999995


Q ss_pred             --cCcccccchhhhhcCCCCCceEEecCCc-CCCCccccccCCCCCccCC
Q 038163          161 --LGINSSETLNQGLCSLVHLQELYIASND-LRGSLPWCMANMTSLRILD  207 (207)
Q Consensus       161 --~~~~~~i~~~~~~~~~~~L~~L~l~~n~-l~~~~p~~~~~l~~L~~l~  207 (207)
                        ++ ++.+ +. .+..+++|+.|++++|. +.+..+..+..+++|++|+
T Consensus       207 ~~~~-~~~l-~~-~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~  253 (336)
T 2ast_B          207 KNLQ-KSDL-ST-LVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLS  253 (336)
T ss_dssp             GGSC-HHHH-HH-HHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEE
T ss_pred             ccCC-HHHH-HH-HHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEee
Confidence              43 1245 55 77889999999999999 6767778888999998764

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.72  E-value=5.8e-17  Score=127.09  Aligned_cols=156  Identities=17%  Similarity=0.241  Sum_probs=106.9

Q ss_pred             CCCccCceecCccccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcCC
Q 038163            2 SFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDD   81 (207)
Q Consensus         2 ~~n~~~~~~p~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~~   81 (207)
                      ++|.+.. ++ . +..+++|++|++++|.+   ..++. +..+++|++|++++|.+++ .+    .+..+++|++|++++
T Consensus        54 ~~~~i~~-~~-~-~~~l~~L~~L~L~~n~l---~~~~~-l~~l~~L~~L~l~~n~l~~-~~----~l~~l~~L~~L~L~~  121 (291)
T 1h6t_A           54 NNSDIKS-VQ-G-IQYLPNVTKLFLNGNKL---TDIKP-LANLKNLGWLFLDENKVKD-LS----SLKDLKKLKSLSLEH  121 (291)
T ss_dssp             TTSCCCC-CT-T-GGGCTTCCEEECCSSCC---CCCGG-GTTCTTCCEEECCSSCCCC-GG----GGTTCTTCCEEECTT
T ss_pred             cCCCccc-Ch-h-HhcCCCCCEEEccCCcc---CCCcc-cccCCCCCEEECCCCcCCC-Ch----hhccCCCCCEEECCC
Confidence            4566653 43 2 57778888888888887   23333 7777888888888887775 33    577778888888888


Q ss_pred             CCCChHHHHhhcccccc-----cCCcccceeccccccccCCCCCCCccceecccccccccCchhHHHHHhcCCCccEEEc
Q 038163           82 SPLHISLLQSIASIFPL-----LKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSL  156 (207)
Q Consensus        82 ~~~~~~~~~~l~~l~~L-----~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L~l  156 (207)
                      |.+...  ..+..+++|     ++|.+++.  .       .+..+++|+.|+++  +|.+++..+  +. .+++|+.|++
T Consensus       122 n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~-------~l~~l~~L~~L~L~--~N~l~~~~~--l~-~l~~L~~L~L  185 (291)
T 1h6t_A          122 NGISDI--NGLVHLPQLESLYLGNNKITDI--T-------VLSRLTKLDTLSLE--DNQISDIVP--LA-GLTKLQNLYL  185 (291)
T ss_dssp             SCCCCC--GGGGGCTTCCEEECCSSCCCCC--G-------GGGGCTTCSEEECC--SSCCCCCGG--GT-TCTTCCEEEC
T ss_pred             CcCCCC--hhhcCCCCCCEEEccCCcCCcc--h-------hhccCCCCCEEEcc--CCccccchh--hc-CCCccCEEEC
Confidence            877642  334444444     66666553  2       56677788888888  887775444  55 7778888888


Q ss_pred             cCCccCcccccchhhhhcCCCCCceEEecCCcCCC
Q 038163          157 SYYTLGINSSETLNQGLCSLVHLQELYIASNDLRG  191 (207)
Q Consensus       157 ~~n~~~~~~~i~~~~~~~~~~~L~~L~l~~n~l~~  191 (207)
                      ++|.++   .+ +  .+..+++|+.|++++|++..
T Consensus       186 ~~N~i~---~l-~--~l~~l~~L~~L~l~~n~i~~  214 (291)
T 1h6t_A          186 SKNHIS---DL-R--ALAGLKNLDVLELFSQECLN  214 (291)
T ss_dssp             CSSCCC---BC-G--GGTTCTTCSEEEEEEEEEEC
T ss_pred             CCCcCC---CC-h--hhccCCCCCEEECcCCcccC
Confidence            888887   55 4  46777888888888887764

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.72  E-value=3.8e-18  Score=129.94  Aligned_cols=173  Identities=11%  Similarity=0.153  Sum_probs=134.4

Q ss_pred             eecCccccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCc-CCcccccchhcccCCCCccEEEcCC-CCCCh
Q 038163            9 LVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNN-FTETVTITTQELHNFTNMEYLKLDD-SPLHI   86 (207)
Q Consensus         9 ~~p~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~l~~l~~L~~L~l~~-~~~~~   86 (207)
                      .+|.  +.  .++++|++++|.+  ....+..+..+++|++|++++|. ++...+   ..+..+++|++|++++ |.++.
T Consensus        25 ~ip~--~~--~~l~~L~l~~n~l--~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~---~~f~~l~~L~~L~l~~~n~l~~   95 (239)
T 2xwt_C           25 RIPS--LP--PSTQTLKLIETHL--RTIPSHAFSNLPNISRIYVSIDVTLQQLES---HSFYNLSKVTHIEIRNTRNLTY   95 (239)
T ss_dssp             SCCC--CC--TTCCEEEEESCCC--SEECTTTTTTCTTCCEEEEECCSSCCEECT---TTEESCTTCCEEEEEEETTCCE
T ss_pred             ccCC--CC--CcccEEEEeCCcc--eEECHHHccCCCCCcEEeCCCCCCcceeCH---hHcCCCcCCcEEECCCCCCeeE
Confidence            4664  22  4899999999999  44444488899999999999997 887666   6788999999999998 88875


Q ss_pred             HHHHhhcccccc-----cCCcccceeccccccccCCCCCCCccc---eeccccccc-ccCchhHHHHHhcCCCcc-EEEc
Q 038163           87 SLLQSIASIFPL-----LKNLSMIGCEVNGVIRGQDFPHSKSLE---HLDMEFMRI-ALNTSFLQIISESMSSLK-YLSL  156 (207)
Q Consensus        87 ~~~~~l~~l~~L-----~~n~~~~~~~~~~~~~~~~~~~~~~L~---~L~l~~~~n-~~~~~~~~~l~~~~~~L~-~L~l  156 (207)
                      ..+..+..+++|     .+|.+++ +|        .+..+.+|+   .|+++  +| .++...+..+. .+++|+ .|++
T Consensus        96 i~~~~f~~l~~L~~L~l~~n~l~~-lp--------~~~~l~~L~~L~~L~l~--~N~~l~~i~~~~~~-~l~~L~~~L~l  163 (239)
T 2xwt_C           96 IDPDALKELPLLKFLGIFNTGLKM-FP--------DLTKVYSTDIFFILEIT--DNPYMTSIPVNAFQ-GLCNETLTLKL  163 (239)
T ss_dssp             ECTTSEECCTTCCEEEEEEECCCS-CC--------CCTTCCBCCSEEEEEEE--SCTTCCEECTTTTT-TTBSSEEEEEC
T ss_pred             cCHHHhCCCCCCCEEeCCCCCCcc-cc--------ccccccccccccEEECC--CCcchhhcCccccc-chhcceeEEEc
Confidence            444555555555     6677765 44        456667777   99999  99 88765555677 889999 9999


Q ss_pred             cCCccCcccccchhhhhcCCCCCceEEecCCc-CCCCccccccCC-CCCccCC
Q 038163          157 SYYTLGINSSETLNQGLCSLVHLQELYIASND-LRGSLPWCMANM-TSLRILD  207 (207)
Q Consensus       157 ~~n~~~~~~~i~~~~~~~~~~~L~~L~l~~n~-l~~~~p~~~~~l-~~L~~l~  207 (207)
                      ++|.++   .+ +...+.. ++|+.|++++|+ +.+..+..|..+ ++|+.||
T Consensus       164 ~~n~l~---~i-~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~  211 (239)
T 2xwt_C          164 YNNGFT---SV-QGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLD  211 (239)
T ss_dssp             CSCCCC---EE-CTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEE
T ss_pred             CCCCCc---cc-CHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEE
Confidence            999998   77 6634554 899999999995 875556778888 8888764

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.72  E-value=6.3e-18  Score=135.83  Aligned_cols=185  Identities=13%  Similarity=0.108  Sum_probs=122.4

Q ss_pred             CCCCccCceecCccccCCCCCcEEecCCCcccCCCcchh-hhcCCCCCCE-EEcCCCcCCcccccchhcccCCCCccEEE
Q 038163            1 MSFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQ-SIGSFSSLNS-LYLSSNNFTETVTITTQELHNFTNMEYLK   78 (207)
Q Consensus         1 l~~n~~~~~~p~~~~~~l~~L~~L~ls~n~i~~~~~~~~-~~~~l~~L~~-L~l~~n~~~~~~~~~~~~l~~l~~L~~L~   78 (207)
                      |++|++. .+|+.+|.++++|++|++++|.+  ...++. .|.++++++. +.+..|.++...|   ..+..+++|++|+
T Consensus        37 Ls~N~i~-~i~~~~f~~l~~L~~L~Ls~N~i--~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~---~~f~~l~~L~~L~  110 (350)
T 4ay9_X           37 FVLTKLR-VIQKGAFSGFGDLEKIEISQNDV--LEVIEADVFSNLPKLHEIRIEKANNLLYINP---EAFQNLPNLQYLL  110 (350)
T ss_dssp             EESCCCS-EECTTSSTTCTTCCEEEEECCTT--CCEECTTSBCSCTTCCEEEEEEETTCCEECT---TSBCCCTTCCEEE
T ss_pred             ccCCcCC-CcCHHHHcCCCCCCEEECcCCCC--CCccChhHhhcchhhhhhhcccCCcccccCc---hhhhhcccccccc
Confidence            3566666 57767777777777777777776  344443 4566766654 5556677776666   5677788888888


Q ss_pred             cCCCCCChHHHHhhcccccc------cCCcccceeccccccccCCCCCCC-ccceecccccccccCchhHHHHHhcCCCc
Q 038163           79 LDDSPLHISLLQSIASIFPL------LKNLSMIGCEVNGVIRGQDFPHSK-SLEHLDMEFMRIALNTSFLQIISESMSSL  151 (207)
Q Consensus        79 l~~~~~~~~~~~~l~~l~~L------~~n~~~~~~~~~~~~~~~~~~~~~-~L~~L~l~~~~n~~~~~~~~~l~~~~~~L  151 (207)
                      +++|.+.............+      ..+.+...-+.       .+..+. .++.|+++  +|.++. ++.... ...++
T Consensus       111 l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~-------~f~~~~~~l~~L~L~--~N~i~~-i~~~~f-~~~~L  179 (350)
T 4ay9_X          111 ISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERN-------SFVGLSFESVILWLN--KNGIQE-IHNSAF-NGTQL  179 (350)
T ss_dssp             EEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTT-------SSTTSBSSCEEEECC--SSCCCE-ECTTSS-TTEEE
T ss_pred             ccccccccCCchhhcccchhhhhhhcccccccccccc-------chhhcchhhhhhccc--cccccC-CChhhc-cccch
Confidence            88887763222222222221      22334332222       555554 68889999  999984 444444 56789


Q ss_pred             cEEEccC-CccCcccccchhhhhcCCCCCceEEecCCcCCCCccccccCCCCCccC
Q 038163          152 KYLSLSY-YTLGINSSETLNQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRIL  206 (207)
Q Consensus       152 ~~L~l~~-n~~~~~~~i~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l  206 (207)
                      +.+.+++ |.++   .+ |...|..+++|+.|++++|+++...+..+..+++|+.+
T Consensus       180 ~~l~l~~~n~l~---~i-~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~~L~~L~~l  231 (350)
T 4ay9_X          180 DELNLSDNNNLE---EL-PNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRAR  231 (350)
T ss_dssp             EEEECTTCTTCC---CC-CTTTTTTEECCSEEECTTSCCCCCCSSSCTTCCEEECT
T ss_pred             hHHhhccCCccc---CC-CHHHhccCcccchhhcCCCCcCccChhhhccchHhhhc
Confidence            9999986 5565   88 76578999999999999999986545667777777654

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.72  E-value=7.1e-17  Score=126.59  Aligned_cols=169  Identities=22%  Similarity=0.342  Sum_probs=134.5

Q ss_pred             CCccCceecCccccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcCCC
Q 038163            3 FNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDDS   82 (207)
Q Consensus         3 ~n~~~~~~p~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~~~   82 (207)
                      .+.+.+.++   +..++++++|++++|.+   ..++ .+..+++|++|++++|.+++. +    .+..+++|++|++++|
T Consensus        33 ~~~~~~~~~---~~~l~~L~~L~l~~~~i---~~~~-~~~~l~~L~~L~L~~n~l~~~-~----~l~~l~~L~~L~l~~n  100 (291)
T 1h6t_A           33 KKSVTDAVT---QNELNSIDQIIANNSDI---KSVQ-GIQYLPNVTKLFLNGNKLTDI-K----PLANLKNLGWLFLDEN  100 (291)
T ss_dssp             CSCTTSEEC---HHHHHTCCEEECTTSCC---CCCT-TGGGCTTCCEEECCSSCCCCC-G----GGTTCTTCCEEECCSS
T ss_pred             CCCcccccc---hhhcCcccEEEccCCCc---ccCh-hHhcCCCCCEEEccCCccCCC-c----ccccCCCCCEEECCCC
Confidence            444554333   36789999999999999   3444 478899999999999999874 4    3789999999999999


Q ss_pred             CCChHHHHhhcccccc-----cCCcccceeccccccccCCCCCCCccceecccccccccCchhHHHHHhcCCCccEEEcc
Q 038163           83 PLHISLLQSIASIFPL-----LKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSLS  157 (207)
Q Consensus        83 ~~~~~~~~~l~~l~~L-----~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L~l~  157 (207)
                      .+..  +..+..+++|     ++|.+.+.  .       .+..+++|+.|+++  +|.+++.  ..+. .+++|+.|+++
T Consensus       101 ~l~~--~~~l~~l~~L~~L~L~~n~i~~~--~-------~l~~l~~L~~L~l~--~n~l~~~--~~l~-~l~~L~~L~L~  164 (291)
T 1h6t_A          101 KVKD--LSSLKDLKKLKSLSLEHNGISDI--N-------GLVHLPQLESLYLG--NNKITDI--TVLS-RLTKLDTLSLE  164 (291)
T ss_dssp             CCCC--GGGGTTCTTCCEEECTTSCCCCC--G-------GGGGCTTCCEEECC--SSCCCCC--GGGG-GCTTCSEEECC
T ss_pred             cCCC--ChhhccCCCCCEEECCCCcCCCC--h-------hhcCCCCCCEEEcc--CCcCCcc--hhhc-cCCCCCEEEcc
Confidence            9874  2345555555     77777663  3       67789999999999  9999864  5566 89999999999


Q ss_pred             CCccCcccccchhhhhcCCCCCceEEecCCcCCCCccccccCCCCCccCC
Q 038163          158 YYTLGINSSETLNQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILD  207 (207)
Q Consensus       158 ~n~~~~~~~i~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~  207 (207)
                      +|.+.   .+ +.  +..+++|+.|++++|.+.+ ++. +..+++|+.|+
T Consensus       165 ~N~l~---~~-~~--l~~l~~L~~L~L~~N~i~~-l~~-l~~l~~L~~L~  206 (291)
T 1h6t_A          165 DNQIS---DI-VP--LAGLTKLQNLYLSKNHISD-LRA-LAGLKNLDVLE  206 (291)
T ss_dssp             SSCCC---CC-GG--GTTCTTCCEEECCSSCCCB-CGG-GTTCTTCSEEE
T ss_pred             CCccc---cc-hh--hcCCCccCEEECCCCcCCC-Chh-hccCCCCCEEE
Confidence            99998   55 43  7889999999999999985 444 88888888764

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.72  E-value=4.6e-17  Score=123.38  Aligned_cols=146  Identities=21%  Similarity=0.218  Sum_probs=124.3

Q ss_pred             CCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcCCCCCChHHHHhhccccccc
Q 038163           20 KLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDDSPLHISLLQSIASIFPLL   99 (207)
Q Consensus        20 ~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~   99 (207)
                      .-+.++.+++.+   ..+|..+.  ++|++|++++|.+++..|   ..+..+++|++|++++|.+.              
T Consensus        20 s~~~v~c~~~~l---~~ip~~~~--~~L~~L~Ls~n~i~~~~~---~~~~~l~~L~~L~L~~N~l~--------------   77 (229)
T 3e6j_A           20 SGTTVDCRSKRH---ASVPAGIP--TNAQILYLHDNQITKLEP---GVFDSLINLKELYLGSNQLG--------------   77 (229)
T ss_dssp             ETTEEECTTSCC---SSCCSCCC--TTCSEEECCSSCCCCCCT---TTTTTCTTCCEEECCSSCCC--------------
T ss_pred             eCCEeEccCCCc---CccCCCCC--CCCCEEEcCCCccCccCH---HHhhCccCCcEEECCCCCCC--------------
Confidence            356799999998   66776554  899999999999999888   78889999999999999986              


Q ss_pred             CCcccceeccccccccCCCCCCCccceecccccccccCchhHHHHHhcCCCccEEEccCCccCcccccchhhhhcCCCCC
Q 038163          100 KNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSLSYYTLGINSSETLNQGLCSLVHL  179 (207)
Q Consensus       100 ~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L~l~~n~~~~~~~i~~~~~~~~~~~L  179 (207)
                            .++..      .+..+++|++|+++  +|.++...+..+. .+++|+.|++++|.++   .+ |. .+..+++|
T Consensus        78 ------~i~~~------~~~~l~~L~~L~Ls--~N~l~~l~~~~~~-~l~~L~~L~Ls~N~l~---~l-p~-~~~~l~~L  137 (229)
T 3e6j_A           78 ------ALPVG------VFDSLTQLTVLDLG--TNQLTVLPSAVFD-RLVHLKELFMCCNKLT---EL-PR-GIERLTHL  137 (229)
T ss_dssp             ------CCCTT------TTTTCTTCCEEECC--SSCCCCCCTTTTT-TCTTCCEEECCSSCCC---SC-CT-TGGGCTTC
T ss_pred             ------CcChh------hcccCCCcCEEECC--CCcCCccChhHhC-cchhhCeEeccCCccc---cc-Cc-ccccCCCC
Confidence                  23321      57889999999999  9999865556667 8999999999999998   88 87 88999999


Q ss_pred             ceEEecCCcCCCCccccccCCCCCccCC
Q 038163          180 QELYIASNDLRGSLPWCMANMTSLRILD  207 (207)
Q Consensus       180 ~~L~l~~n~l~~~~p~~~~~l~~L~~l~  207 (207)
                      +.|++++|++.+..+..+..+++|+.|+
T Consensus       138 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~  165 (229)
T 3e6j_A          138 THLALDQNQLKSIPHGAFDRLSSLTHAY  165 (229)
T ss_dssp             SEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CEEECCCCcCCccCHHHHhCCCCCCEEE
Confidence            9999999999976667788899988763

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.71  E-value=6.8e-17  Score=121.75  Aligned_cols=146  Identities=13%  Similarity=0.204  Sum_probs=122.8

Q ss_pred             CcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcCCCCCChHHHHhhcccccccC
Q 038163           21 LKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDDSPLHISLLQSIASIFPLLK  100 (207)
Q Consensus        21 L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~  100 (207)
                      -+.++.+++.+   ..+|..+.  +.++.|++++|.++...+   ..+..+++|++|++++|.+..              
T Consensus        13 ~~~v~c~~~~l---~~iP~~l~--~~l~~L~l~~n~i~~i~~---~~~~~l~~L~~L~Ls~N~i~~--------------   70 (220)
T 2v9t_B           13 NNIVDCRGKGL---TEIPTNLP--ETITEIRLEQNTIKVIPP---GAFSPYKKLRRIDLSNNQISE--------------   70 (220)
T ss_dssp             TTEEECTTSCC---SSCCSSCC--TTCCEEECCSSCCCEECT---TSSTTCTTCCEEECCSSCCCE--------------
T ss_pred             CCEEEcCCCCc---CcCCCccC--cCCCEEECCCCcCCCcCH---hHhhCCCCCCEEECCCCcCCC--------------
Confidence            36789999999   56776554  789999999999998776   688899999999999999871              


Q ss_pred             CcccceeccccccccCCCCCCCccceecccccccccCchhHHHHHhcCCCccEEEccCCccCcccccchhhhhcCCCCCc
Q 038163          101 NLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSLSYYTLGINSSETLNQGLCSLVHLQ  180 (207)
Q Consensus       101 n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L~l~~n~~~~~~~i~~~~~~~~~~~L~  180 (207)
                           ..+.       .+..+++|++|+++  +|.++...+..+. .+++|+.|++++|.++   .+.+. .+..+++|+
T Consensus        71 -----~~~~-------~~~~l~~L~~L~Ls--~N~l~~l~~~~f~-~l~~L~~L~L~~N~l~---~~~~~-~~~~l~~L~  131 (220)
T 2v9t_B           71 -----LAPD-------AFQGLRSLNSLVLY--GNKITELPKSLFE-GLFSLQLLLLNANKIN---CLRVD-AFQDLHNLN  131 (220)
T ss_dssp             -----ECTT-------TTTTCSSCCEEECC--SSCCCCCCTTTTT-TCTTCCEEECCSSCCC---CCCTT-TTTTCTTCC
T ss_pred             -----cCHH-------HhhCCcCCCEEECC--CCcCCccCHhHcc-CCCCCCEEECCCCCCC---EeCHH-HcCCCCCCC
Confidence                 2344       78899999999999  9999854445566 8999999999999998   54154 899999999


Q ss_pred             eEEecCCcCCCCccccccCCCCCccCC
Q 038163          181 ELYIASNDLRGSLPWCMANMTSLRILD  207 (207)
Q Consensus       181 ~L~l~~n~l~~~~p~~~~~l~~L~~l~  207 (207)
                      .|++++|++.+..+..+..+++|+.++
T Consensus       132 ~L~L~~N~l~~~~~~~~~~l~~L~~L~  158 (220)
T 2v9t_B          132 LLSLYDNKLQTIAKGTFSPLRAIQTMH  158 (220)
T ss_dssp             EEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred             EEECCCCcCCEECHHHHhCCCCCCEEE
Confidence            999999999987778899999988764

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.71  E-value=1.7e-16  Score=125.41  Aligned_cols=169  Identities=20%  Similarity=0.298  Sum_probs=134.1

Q ss_pred             CCccCceecCccccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcCCC
Q 038163            3 FNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDDS   82 (207)
Q Consensus         3 ~n~~~~~~p~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~~~   82 (207)
                      .+.+...++   +..+++|++|++++|.+   ..++ .+..+++|++|++++|.+++. +    .+..+++|++|++++|
T Consensus        28 ~~~~~~~~~---~~~l~~L~~L~l~~~~i---~~l~-~~~~l~~L~~L~L~~n~i~~~-~----~~~~l~~L~~L~L~~n   95 (308)
T 1h6u_A           28 KSNVTDTVT---QADLDGITTLSAFGTGV---TTIE-GVQYLNNLIGLELKDNQITDL-A----PLKNLTKITELELSGN   95 (308)
T ss_dssp             CSSTTSEEC---HHHHHTCCEEECTTSCC---CCCT-TGGGCTTCCEEECCSSCCCCC-G----GGTTCCSCCEEECCSC
T ss_pred             CCCcCceec---HHHcCCcCEEEeeCCCc---cCch-hhhccCCCCEEEccCCcCCCC-h----hHccCCCCCEEEccCC
Confidence            344554333   35688999999999999   3455 588899999999999999864 4    3789999999999999


Q ss_pred             CCChHHHHhhcccccc-----cCCcccceeccccccccCCCCCCCccceecccccccccCchhHHHHHhcCCCccEEEcc
Q 038163           83 PLHISLLQSIASIFPL-----LKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSLS  157 (207)
Q Consensus        83 ~~~~~~~~~l~~l~~L-----~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L~l~  157 (207)
                      .+...  ..+..+++|     ++|.+.+ ++        .+..+++|+.|+++  +|.+++..+  +. .+++|+.|+++
T Consensus        96 ~l~~~--~~~~~l~~L~~L~l~~n~l~~-~~--------~l~~l~~L~~L~l~--~n~l~~~~~--l~-~l~~L~~L~l~  159 (308)
T 1h6u_A           96 PLKNV--SAIAGLQSIKTLDLTSTQITD-VT--------PLAGLSNLQVLYLD--LNQITNISP--LA-GLTNLQYLSIG  159 (308)
T ss_dssp             CCSCC--GGGTTCTTCCEEECTTSCCCC-CG--------GGTTCTTCCEEECC--SSCCCCCGG--GG-GCTTCCEEECC
T ss_pred             cCCCc--hhhcCCCCCCEEECCCCCCCC-ch--------hhcCCCCCCEEECC--CCccCcCcc--cc-CCCCccEEEcc
Confidence            98742  345555555     7777766 23        57789999999999  999986444  66 89999999999


Q ss_pred             CCccCcccccchhhhhcCCCCCceEEecCCcCCCCccccccCCCCCccCC
Q 038163          158 YYTLGINSSETLNQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILD  207 (207)
Q Consensus       158 ~n~~~~~~~i~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~  207 (207)
                      +|.++   .+ +.  +..+++|+.|++++|.+.+..+  +..+++|+.|+
T Consensus       160 ~n~l~---~~-~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~  201 (308)
T 1h6u_A          160 NAQVS---DL-TP--LANLSKLTTLKADDNKISDISP--LASLPNLIEVH  201 (308)
T ss_dssp             SSCCC---CC-GG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEE
T ss_pred             CCcCC---CC-hh--hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEE
Confidence            99998   66 43  7889999999999999986433  77888888764

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.70  E-value=1.7e-16  Score=136.00  Aligned_cols=158  Identities=17%  Similarity=0.220  Sum_probs=124.1

Q ss_pred             CCCCccCceecCccccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcC
Q 038163            1 MSFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLD   80 (207)
Q Consensus         1 l~~n~~~~~~p~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~   80 (207)
                      +++|.+. .+| . +..+++|+.|+|++|.+   ..++. +..+++|+.|++++|.++..     ..+..+++|++|+|+
T Consensus        50 l~~n~i~-~l~-~-l~~l~~L~~L~Ls~N~l---~~~~~-l~~l~~L~~L~Ls~N~l~~l-----~~l~~l~~L~~L~Ls  117 (605)
T 1m9s_A           50 ANNSDIK-SVQ-G-IQYLPNVTKLFLNGNKL---TDIKP-LTNLKNLGWLFLDENKIKDL-----SSLKDLKKLKSLSLE  117 (605)
T ss_dssp             CTTCCCC-CCT-T-GGGCTTCCEEECTTSCC---CCCGG-GGGCTTCCEEECCSSCCCCC-----TTSTTCTTCCEEECT
T ss_pred             CcCCCCC-CCh-H-HccCCCCCEEEeeCCCC---CCChh-hccCCCCCEEECcCCCCCCC-----hhhccCCCCCEEEec
Confidence            3566666 354 3 68899999999999999   33443 88899999999999988863     367889999999999


Q ss_pred             CCCCChHHHHhhcccccc-----cCCcccceeccccccccCCCCCCCccceecccccccccCchhHHHHHhcCCCccEEE
Q 038163           81 DSPLHISLLQSIASIFPL-----LKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLS  155 (207)
Q Consensus        81 ~~~~~~~~~~~l~~l~~L-----~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L~  155 (207)
                      +|.+...  ..+..+++|     ++|.+.+.  .       .+..+++|+.|+++  +|.+++..+  +. .+++|+.|+
T Consensus       118 ~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~-------~l~~l~~L~~L~Ls--~N~l~~~~~--l~-~l~~L~~L~  181 (605)
T 1m9s_A          118 HNGISDI--NGLVHLPQLESLYLGNNKITDI--T-------VLSRLTKLDTLSLE--DNQISDIVP--LA-GLTKLQNLY  181 (605)
T ss_dssp             TSCCCCC--GGGGGCTTCSEEECCSSCCCCC--G-------GGGSCTTCSEEECC--SSCCCCCGG--GT-TCTTCCEEE
T ss_pred             CCCCCCC--ccccCCCccCEEECCCCccCCc--h-------hhcccCCCCEEECc--CCcCCCchh--hc-cCCCCCEEE
Confidence            9998742  345555554     77777664  3       67788999999999  999886655  66 889999999


Q ss_pred             ccCCccCcccccchhhhhcCCCCCceEEecCCcCCCC
Q 038163          156 LSYYTLGINSSETLNQGLCSLVHLQELYIASNDLRGS  192 (207)
Q Consensus       156 l~~n~~~~~~~i~~~~~~~~~~~L~~L~l~~n~l~~~  192 (207)
                      +++|.+.   .+ +  .+..+++|+.|++++|.+.+.
T Consensus       182 Ls~N~i~---~l-~--~l~~l~~L~~L~L~~N~l~~~  212 (605)
T 1m9s_A          182 LSKNHIS---DL-R--ALAGLKNLDVLELFSQECLNK  212 (605)
T ss_dssp             CCSSCCC---BC-G--GGTTCTTCSEEECCSEEEECC
T ss_pred             CcCCCCC---CC-h--HHccCCCCCEEEccCCcCcCC
Confidence            9999998   66 4  578899999999999988764

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.70  E-value=7e-18  Score=136.10  Aligned_cols=195  Identities=21%  Similarity=0.135  Sum_probs=101.3

Q ss_pred             CCCCccCceecCccccCCCCCcEEecCCCcccCCCcch----hhhcCCC-CCCEEEcCCCcCCcccccchhcccCC----
Q 038163            1 MSFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLL----QSIGSFS-SLNSLYLSSNNFTETVTITTQELHNF----   71 (207)
Q Consensus         1 l~~n~~~~~~p~~~~~~l~~L~~L~ls~n~i~~~~~~~----~~~~~l~-~L~~L~l~~n~~~~~~~~~~~~l~~l----   71 (207)
                      |+.|.++|.+| +++...++|++|++++|.+  ....+    ..+..++ +|++|++++|.+++..+   ..+..+    
T Consensus         5 ls~n~~~~~~~-~~~~~~~~L~~L~Ls~n~l--~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~---~~l~~~l~~~   78 (362)
T 3goz_A            5 LTLHPGSNPVE-EFTSIPHGVTSLDLSLNNL--YSISTVELIQAFANTPASVTSLNLSGNSLGFKNS---DELVQILAAI   78 (362)
T ss_dssp             CCCCTTCCHHH-HHHTSCTTCCEEECTTSCG--GGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCH---HHHHHHHHTS
T ss_pred             cccccchHHHH-HHHhCCCCceEEEccCCCC--ChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHH---HHHHHHHhcc
Confidence            45677776655 4445555577777777777  33333    5566676 77777777777776544   333332    


Q ss_pred             -CCccEEEcCCCCCChHHHHh----h----cccccc--cCCcccceecc------------ccccccC------------
Q 038163           72 -TNMEYLKLDDSPLHISLLQS----I----ASIFPL--LKNLSMIGCEV------------NGVIRGQ------------  116 (207)
Q Consensus        72 -~~L~~L~l~~~~~~~~~~~~----l----~~l~~L--~~n~~~~~~~~------------~~~~~~~------------  116 (207)
                       ++|++|++++|.+.+..+..    +    ..++.|  ++|.+++..+.            ...+++.            
T Consensus        79 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l  158 (362)
T 3goz_A           79 PANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDEL  158 (362)
T ss_dssp             CTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHH
T ss_pred             CCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHH
Confidence             66777777777765433221    1    233333  55555442211            0000000            


Q ss_pred             --CCCCCC-ccceecccccccccCchhHHH----HHhcC-CCccEEEccCCccCccc--ccchhhhhcC-CCCCceEEec
Q 038163          117 --DFPHSK-SLEHLDMEFMRIALNTSFLQI----ISESM-SSLKYLSLSYYTLGINS--SETLNQGLCS-LVHLQELYIA  185 (207)
Q Consensus       117 --~~~~~~-~L~~L~l~~~~n~~~~~~~~~----l~~~~-~~L~~L~l~~n~~~~~~--~i~~~~~~~~-~~~L~~L~l~  185 (207)
                        .+..++ +|++|+++  +|.+++..+..    +. .+ ++|+.|++++|.++..+  .+ +. .+.. .++|+.|+++
T Consensus       159 ~~~l~~~~~~L~~L~Ls--~n~l~~~~~~~l~~~l~-~~~~~L~~L~Ls~N~i~~~~~~~l-~~-~l~~~~~~L~~L~Ls  233 (362)
T 3goz_A          159 IQILAAIPANVNSLNLR--GNNLASKNCAELAKFLA-SIPASVTSLDLSANLLGLKSYAEL-AY-IFSSIPNHVVSLNLC  233 (362)
T ss_dssp             HHHHHTSCTTCCEEECT--TSCGGGSCHHHHHHHHH-TSCTTCCEEECTTSCGGGSCHHHH-HH-HHHHSCTTCCEEECC
T ss_pred             HHHHhcCCccccEeeec--CCCCchhhHHHHHHHHH-hCCCCCCEEECCCCCCChhHHHHH-HH-HHhcCCCCceEEECc
Confidence              112232 56666666  66665444332    22 33 36666666666665100  13 33 3333 3467777777


Q ss_pred             CCcCCCCcc----ccccCCCCCccC
Q 038163          186 SNDLRGSLP----WCMANMTSLRIL  206 (207)
Q Consensus       186 ~n~l~~~~p----~~~~~l~~L~~l  206 (207)
                      +|.+.+..+    ..+..+++|++|
T Consensus       234 ~N~l~~~~~~~l~~~~~~l~~L~~L  258 (362)
T 3goz_A          234 LNCLHGPSLENLKLLKDSLKHLQTV  258 (362)
T ss_dssp             SSCCCCCCHHHHHHTTTTTTTCSEE
T ss_pred             CCCCCcHHHHHHHHHHhcCCCccEE
Confidence            777665433    223445555544

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.70  E-value=5.1e-16  Score=124.13  Aligned_cols=178  Identities=19%  Similarity=0.288  Sum_probs=100.3

Q ss_pred             CCCccCceecCccccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcCC
Q 038163            2 SFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDD   81 (207)
Q Consensus         2 ~~n~~~~~~p~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~~   81 (207)
                      ++|.+. .+| . +..+++|++|++++|.+   ..++. +..+++|++|++++|.++.. +    .+..+++|++|++++
T Consensus        52 ~~~~i~-~~~-~-~~~~~~L~~L~l~~n~i---~~~~~-~~~l~~L~~L~L~~n~i~~~-~----~~~~l~~L~~L~l~~  119 (347)
T 4fmz_A           52 AGEKVA-SIQ-G-IEYLTNLEYLNLNGNQI---TDISP-LSNLVKLTNLYIGTNKITDI-S----ALQNLTNLRELYLNE  119 (347)
T ss_dssp             CSSCCC-CCT-T-GGGCTTCCEEECCSSCC---CCCGG-GTTCTTCCEEECCSSCCCCC-G----GGTTCTTCSEEECTT
T ss_pred             eCCccc-cch-h-hhhcCCccEEEccCCcc---ccchh-hhcCCcCCEEEccCCcccCc-h----HHcCCCcCCEEECcC
Confidence            455555 344 2 57778888888888877   33444 77778888888888877753 3    567777788888877


Q ss_pred             CCCChHHHHhhcccccc-----cCCcccceecccc--------------ccccCCCCCCCccceecccccccccCchhHH
Q 038163           82 SPLHISLLQSIASIFPL-----LKNLSMIGCEVNG--------------VIRGQDFPHSKSLEHLDMEFMRIALNTSFLQ  142 (207)
Q Consensus        82 ~~~~~~~~~~l~~l~~L-----~~n~~~~~~~~~~--------------~~~~~~~~~~~~L~~L~l~~~~n~~~~~~~~  142 (207)
                      |.+.....  +..+++|     ++|......+...              ......+..+++|+.|+++  +|.+.+..+ 
T Consensus       120 n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~--~n~l~~~~~-  194 (347)
T 4fmz_A          120 DNISDISP--LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLN--YNQIEDISP-  194 (347)
T ss_dssp             SCCCCCGG--GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECT--TSCCCCCGG-
T ss_pred             CcccCchh--hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchhhccCCCCCEEEcc--CCccccccc-
Confidence            77663211  3333333     4443222222100              0000023344555555555  555543222 


Q ss_pred             HHHhcCCCccEEEccCCccCcccccchhhhhcCCCCCceEEecCCcCCCCccccccCCCCCccC
Q 038163          143 IISESMSSLKYLSLSYYTLGINSSETLNQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRIL  206 (207)
Q Consensus       143 ~l~~~~~~L~~L~l~~n~~~~~~~i~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l  206 (207)
                       +. .+++|+.+++++|.+.   .+ +  .+..+++|+.|++++|.+.+..+  +..+++|+.|
T Consensus       195 -~~-~l~~L~~L~l~~n~l~---~~-~--~~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L  248 (347)
T 4fmz_A          195 -LA-SLTSLHYFTAYVNQIT---DI-T--PVANMTRLNSLKIGNNKITDLSP--LANLSQLTWL  248 (347)
T ss_dssp             -GG-GCTTCCEEECCSSCCC---CC-G--GGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEE
T ss_pred             -cc-CCCccceeecccCCCC---CC-c--hhhcCCcCCEEEccCCccCCCcc--hhcCCCCCEE
Confidence             33 4555555555555555   33 2  25667777788888887775432  6667777655

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.70  E-value=9.3e-17  Score=118.88  Aligned_cols=143  Identities=16%  Similarity=0.295  Sum_probs=116.2

Q ss_pred             CCCccCceecCccccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcCC
Q 038163            2 SFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDD   81 (207)
Q Consensus         2 ~~n~~~~~~p~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~~   81 (207)
                      ++|.+. .+| . +..+++|++|++++|.+   ..+ ..+..+++|++|++++|.+++..+   ..+..+++|++|++++
T Consensus        52 ~~n~i~-~l~-~-l~~l~~L~~L~l~~n~~---~~~-~~l~~l~~L~~L~l~~n~l~~~~~---~~l~~l~~L~~L~Ls~  121 (197)
T 4ezg_A           52 ANINVT-DLT-G-IEYAHNIKDLTINNIHA---TNY-NPISGLSNLERLRIMGKDVTSDKI---PNLSGLTSLTLLDISH  121 (197)
T ss_dssp             ESSCCS-CCT-T-GGGCTTCSEEEEESCCC---SCC-GGGTTCTTCCEEEEECTTCBGGGS---CCCTTCTTCCEEECCS
T ss_pred             cCCCcc-ChH-H-HhcCCCCCEEEccCCCC---Ccc-hhhhcCCCCCEEEeECCccCcccC---hhhcCCCCCCEEEecC
Confidence            567777 566 3 68999999999999988   333 478899999999999999998777   7889999999999999


Q ss_pred             CCCChHHHHhhcccccccCCcccceeccccccccCCCCCCCccceecccccccc-cCchhHHHHHhcCCCccEEEccCCc
Q 038163           82 SPLHISLLQSIASIFPLLKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIA-LNTSFLQIISESMSSLKYLSLSYYT  160 (207)
Q Consensus        82 ~~~~~~~~~~l~~l~~L~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~-~~~~~~~~l~~~~~~L~~L~l~~n~  160 (207)
                      |.+.+..+                   .       .+..+++|++|+++  +|. ++ .++ .+. .+++|+.|++++|.
T Consensus       122 n~i~~~~~-------------------~-------~l~~l~~L~~L~L~--~n~~i~-~~~-~l~-~l~~L~~L~l~~n~  170 (197)
T 4ezg_A          122 SAHDDSIL-------------------T-------KINTLPKVNSIDLS--YNGAIT-DIM-PLK-TLPELKSLNIQFDG  170 (197)
T ss_dssp             SBCBGGGH-------------------H-------HHTTCSSCCEEECC--SCTBCC-CCG-GGG-GCSSCCEEECTTBC
T ss_pred             CccCcHhH-------------------H-------HHhhCCCCCEEEcc--CCCCcc-ccH-hhc-CCCCCCEEECCCCC
Confidence            99985433                   2       55677889999999  997 65 444 567 89999999999999


Q ss_pred             cCcccccchhhhhcCCCCCceEEecCCcCCC
Q 038163          161 LGINSSETLNQGLCSLVHLQELYIASNDLRG  191 (207)
Q Consensus       161 ~~~~~~i~~~~~~~~~~~L~~L~l~~n~l~~  191 (207)
                      ++   .+ +  .+..+++|+.|++++|++.+
T Consensus       171 i~---~~-~--~l~~l~~L~~L~l~~N~i~~  195 (197)
T 4ezg_A          171 VH---DY-R--GIEDFPKLNQLYAFSQTIGG  195 (197)
T ss_dssp             CC---CC-T--TGGGCSSCCEEEECBC----
T ss_pred             Cc---Ch-H--HhccCCCCCEEEeeCcccCC
Confidence            98   66 4  57889999999999999864

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.70  E-value=5.8e-17  Score=120.83  Aligned_cols=151  Identities=18%  Similarity=0.149  Sum_probs=122.0

Q ss_pred             CCCCccCceecCccccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcC
Q 038163            1 MSFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLD   80 (207)
Q Consensus         1 l~~n~~~~~~p~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~   80 (207)
                      |++|.+. .+|+.+|..+++|++|++++|.+  ....+..+..+++|++|++++|.++...+   ..+..+++|++|+++
T Consensus        35 l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l--~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~---~~~~~l~~L~~L~L~  108 (208)
T 2o6s_A           35 LETNSLK-SLPNGVFDELTSLTQLYLGGNKL--QSLPNGVFNKLTSLTYLNLSTNQLQSLPN---GVFDKLTQLKELALN  108 (208)
T ss_dssp             CCSSCCC-CCCTTTTTTCTTCSEEECCSSCC--CCCCTTTTTTCTTCCEEECCSSCCCCCCT---TTTTTCTTCCEEECC
T ss_pred             cCCCccC-cCChhhhcccccCcEEECCCCcc--CccChhhcCCCCCcCEEECCCCcCCccCH---hHhcCccCCCEEEcC
Confidence            5788888 47777789999999999999999  44444567899999999999999997766   567899999999999


Q ss_pred             CCCCChHHHHhhcccccc-----cCCcccceeccccccccCCCCCCCccceecccccccccCchhHHHHHhcCCCccEEE
Q 038163           81 DSPLHISLLQSIASIFPL-----LKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLS  155 (207)
Q Consensus        81 ~~~~~~~~~~~l~~l~~L-----~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L~  155 (207)
                      +|.+....+..+..+++|     ++|.+++..+.       .+..+++|++|+++  +|.+..        .++.|+.|.
T Consensus       109 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~-------~~~~l~~L~~L~l~--~N~~~~--------~~~~l~~L~  171 (208)
T 2o6s_A          109 TNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDG-------VFDRLTSLQYIWLH--DNPWDC--------TCPGIRYLS  171 (208)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT-------TTTTCTTCCEEECC--SCCBCC--------CTTTTHHHH
T ss_pred             CCcCcccCHhHhccCCcCCEEECCCCccceeCHH-------HhccCCCccEEEec--CCCeec--------CCCCHHHHH
Confidence            999885444445555554     78888765444       68889999999999  998874        577889999


Q ss_pred             ccCCccCcccccchhhhhcCCCC
Q 038163          156 LSYYTLGINSSETLNQGLCSLVH  178 (207)
Q Consensus       156 l~~n~~~~~~~i~~~~~~~~~~~  178 (207)
                      ++.|.++  +.+ |. .++.++.
T Consensus       172 ~~~n~~~--g~i-p~-~~~~l~~  190 (208)
T 2o6s_A          172 EWINKHS--GVV-RN-SAGSVAP  190 (208)
T ss_dssp             HHHHHCT--TTB-BC-TTSSBCT
T ss_pred             HHHHhCC--cee-ec-cCccccC
Confidence            9999999  888 87 7766553

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.70  E-value=1.2e-16  Score=120.39  Aligned_cols=147  Identities=16%  Similarity=0.201  Sum_probs=122.8

Q ss_pred             CcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcCCCCCChHHHHhhcccccccC
Q 038163           21 LKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDDSPLHISLLQSIASIFPLLK  100 (207)
Q Consensus        21 L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~  100 (207)
                      -+++++++|.+   ..+|..+.  ..+++|++++|.++...+.  ..+..+++|++|++++|.++.              
T Consensus        13 ~~~l~~s~n~l---~~iP~~~~--~~~~~L~L~~N~l~~~~~~--~~~~~l~~L~~L~L~~N~i~~--------------   71 (220)
T 2v70_A           13 GTTVDCSNQKL---NKIPEHIP--QYTAELRLNNNEFTVLEAT--GIFKKLPQLRKINFSNNKITD--------------   71 (220)
T ss_dssp             TTEEECCSSCC---SSCCSCCC--TTCSEEECCSSCCCEECCC--CCGGGCTTCCEEECCSSCCCE--------------
T ss_pred             CCEeEeCCCCc---ccCccCCC--CCCCEEEcCCCcCCccCch--hhhccCCCCCEEECCCCcCCE--------------
Confidence            46899999999   55776553  4678999999999987541  347889999999999999871              


Q ss_pred             CcccceeccccccccCCCCCCCccceecccccccccCchhHHHHHhcCCCccEEEccCCccCcccccchhhhhcCCCCCc
Q 038163          101 NLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSLSYYTLGINSSETLNQGLCSLVHLQ  180 (207)
Q Consensus       101 n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L~l~~n~~~~~~~i~~~~~~~~~~~L~  180 (207)
                           ..+.       .+..+++|++|+++  +|.+++..+..+. .+++|+.|++++|.++  +.. +. .+..+++|+
T Consensus        72 -----i~~~-------~~~~l~~L~~L~Ls--~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~--~~~-~~-~~~~l~~L~  132 (220)
T 2v70_A           72 -----IEEG-------AFEGASGVNEILLT--SNRLENVQHKMFK-GLESLKTLMLRSNRIT--CVG-ND-SFIGLSSVR  132 (220)
T ss_dssp             -----ECTT-------TTTTCTTCCEEECC--SSCCCCCCGGGGT-TCSSCCEEECTTSCCC--CBC-TT-SSTTCTTCS
T ss_pred             -----ECHH-------HhCCCCCCCEEECC--CCccCccCHhHhc-CCcCCCEEECCCCcCC--eEC-Hh-HcCCCccCC
Confidence                 1233       68889999999999  9999877777787 8999999999999998  444 55 899999999


Q ss_pred             eEEecCCcCCCCccccccCCCCCccCC
Q 038163          181 ELYIASNDLRGSLPWCMANMTSLRILD  207 (207)
Q Consensus       181 ~L~l~~n~l~~~~p~~~~~l~~L~~l~  207 (207)
                      .|++++|++.+..|..|..+++|+.|+
T Consensus       133 ~L~L~~N~l~~~~~~~~~~l~~L~~L~  159 (220)
T 2v70_A          133 LLSLYDNQITTVAPGAFDTLHSLSTLN  159 (220)
T ss_dssp             EEECTTSCCCCBCTTTTTTCTTCCEEE
T ss_pred             EEECCCCcCCEECHHHhcCCCCCCEEE
Confidence            999999999988889999999998764

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.69  E-value=8.1e-18  Score=135.74  Aligned_cols=82  Identities=24%  Similarity=0.275  Sum_probs=59.2

Q ss_pred             CC-CccceecccccccccCch----hHHHHHhc-CCCccEEEccCCccCcccccch---hhhhcCCCCCceEEecCCcCC
Q 038163          120 HS-KSLEHLDMEFMRIALNTS----FLQIISES-MSSLKYLSLSYYTLGINSSETL---NQGLCSLVHLQELYIASNDLR  190 (207)
Q Consensus       120 ~~-~~L~~L~l~~~~n~~~~~----~~~~l~~~-~~~L~~L~l~~n~~~~~~~i~~---~~~~~~~~~L~~L~l~~n~l~  190 (207)
                      .+ .+|+.|+++  +|.+++.    ++..+. . .++|+.|++++|.++  +.. +   ...+..+++|+.|++++|.+.
T Consensus       193 ~~~~~L~~L~Ls--~N~i~~~~~~~l~~~l~-~~~~~L~~L~Ls~N~l~--~~~-~~~l~~~~~~l~~L~~L~L~~n~l~  266 (362)
T 3goz_A          193 SIPASVTSLDLS--ANLLGLKSYAELAYIFS-SIPNHVVSLNLCLNCLH--GPS-LENLKLLKDSLKHLQTVYLDYDIVK  266 (362)
T ss_dssp             TSCTTCCEEECT--TSCGGGSCHHHHHHHHH-HSCTTCCEEECCSSCCC--CCC-HHHHHHTTTTTTTCSEEEEEHHHHT
T ss_pred             hCCCCCCEEECC--CCCCChhHHHHHHHHHh-cCCCCceEEECcCCCCC--cHH-HHHHHHHHhcCCCccEEEeccCCcc
Confidence            44 599999999  9999863    455666 5 459999999999998  322 2   114567899999999999955


Q ss_pred             CC-------ccccccCCCCCccCC
Q 038163          191 GS-------LPWCMANMTSLRILD  207 (207)
Q Consensus       191 ~~-------~p~~~~~l~~L~~l~  207 (207)
                      +.       ++..+..+++|+.+|
T Consensus       267 ~i~~~~~~~l~~~~~~l~~L~~Ld  290 (362)
T 3goz_A          267 NMSKEQCKALGAAFPNIQKIILVD  290 (362)
T ss_dssp             TCCHHHHHHHHTTSTTCCEEEEEC
T ss_pred             ccCHHHHHHHHHHhccCCceEEEe
Confidence            33       233556677777654

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.69  E-value=3.4e-17  Score=140.10  Aligned_cols=170  Identities=20%  Similarity=0.199  Sum_probs=129.4

Q ss_pred             CCCCccCceecCccccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcC
Q 038163            1 MSFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLD   80 (207)
Q Consensus         1 l~~n~~~~~~p~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~   80 (207)
                      |++|.|. .+|+..|.++++|++|++++|.|  ....+..|.++++|++|+|++|.++...+   ..+..+++|++|+++
T Consensus        59 Ls~N~i~-~l~~~~f~~l~~L~~L~Ls~N~i--~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~---~~f~~L~~L~~L~Ls  132 (635)
T 4g8a_A           59 LSFNPLR-HLGSYSFFSFPELQVLDLSRCEI--QTIEDGAYQSLSHLSTLILTGNPIQSLAL---GAFSGLSSLQKLVAV  132 (635)
T ss_dssp             CTTSCCC-EECTTTTTTCTTCCEEECTTCCC--CEECTTTTTTCTTCCEEECTTCCCCEECG---GGGTTCTTCCEEECT
T ss_pred             eeCCCCC-CCCHHHHhCCCCCCEEECCCCcC--CCcChhHhcCCCCCCEEEccCCcCCCCCH---HHhcCCCCCCEEECC
Confidence            6889998 58888899999999999999999  44445679999999999999999998776   678999999999999


Q ss_pred             CCCCChHHHHhhcccccc-----cCCcccce-eccccccccCCCCCCCccceecccccccccCchhHHHHH--hcCC-Cc
Q 038163           81 DSPLHISLLQSIASIFPL-----LKNLSMIG-CEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFLQIIS--ESMS-SL  151 (207)
Q Consensus        81 ~~~~~~~~~~~l~~l~~L-----~~n~~~~~-~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~~~~~l~--~~~~-~L  151 (207)
                      +|.++...+..++.+++|     ++|.+.+. .|.       .+..++.|++|+++  +|.+++..+..+.  .... ..
T Consensus       133 ~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~-------~~~~l~~L~~L~L~--~N~l~~~~~~~l~~L~~l~~~~  203 (635)
T 4g8a_A          133 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPE-------YFSNLTNLEHLDLS--SNKIQSIYCTDLRVLHQMPLLN  203 (635)
T ss_dssp             TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCG-------GGGGCTTCCEEECC--SSCCCEECGGGGHHHHTCTTCC
T ss_pred             CCcCCCCChhhhhcCcccCeeccccCccccCCCch-------hhccchhhhhhccc--Cccccccccccccchhhhhhhh
Confidence            999885444445555555     77887653 455       67889999999999  9998865554333  0333 35


Q ss_pred             cEEEccCCccCcccccchhhhhcCCCCCceEEecCCcCC
Q 038163          152 KYLSLSYYTLGINSSETLNQGLCSLVHLQELYIASNDLR  190 (207)
Q Consensus       152 ~~L~l~~n~~~~~~~i~~~~~~~~~~~L~~L~l~~n~l~  190 (207)
                      ..++++.|.+.   .+ +. .......+..+++.+|...
T Consensus       204 ~~~~ls~n~l~---~i-~~-~~~~~~~~~~l~l~~n~~~  237 (635)
T 4g8a_A          204 LSLDLSLNPMN---FI-QP-GAFKEIRLHKLTLRNNFDS  237 (635)
T ss_dssp             CEEECTTCCCC---EE-CT-TTTTTCEEEEEEEESCCSS
T ss_pred             hhhhcccCccc---cc-Cc-ccccchhhhhhhhhccccc
Confidence            57888888887   55 44 3334445667777777544

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.69  E-value=1.2e-17  Score=135.63  Aligned_cols=192  Identities=18%  Similarity=0.143  Sum_probs=119.7

Q ss_pred             CCCCccCceecC---ccccCCCCCcEEecCCCcccC-CCcchhhh-------cCCCCCCEEEcCCCcCCc----ccccch
Q 038163            1 MSFNEINNLVVP---QGYNGLRKLKSLDLSGVGVRD-GSKLLQSI-------GSFSSLNSLYLSSNNFTE----TVTITT   65 (207)
Q Consensus         1 l~~n~~~~~~p~---~~~~~l~~L~~L~ls~n~i~~-~~~~~~~~-------~~l~~L~~L~l~~n~~~~----~~~~~~   65 (207)
                      |++|.+.+..+.   .++..+++|++|++++|.+.. ...+|..+       ..+++|++|++++|.++.    .+|   
T Consensus        39 L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~---  115 (386)
T 2ca6_A           39 LSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLI---  115 (386)
T ss_dssp             CTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHH---
T ss_pred             CCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHH---
Confidence            345555544221   225577788888887765411 12334333       577888888888887776    344   


Q ss_pred             hcccCCCCccEEEcCCCCCChHHHHh----h------------cccccc--cCCccc-ceec---cccccccCCCCCCCc
Q 038163           66 QELHNFTNMEYLKLDDSPLHISLLQS----I------------ASIFPL--LKNLSM-IGCE---VNGVIRGQDFPHSKS  123 (207)
Q Consensus        66 ~~l~~l~~L~~L~l~~~~~~~~~~~~----l------------~~l~~L--~~n~~~-~~~~---~~~~~~~~~~~~~~~  123 (207)
                      ..+..+++|++|++++|.+....+..    +            ..++.|  ++|.++ ..++   .       .+..+++
T Consensus       116 ~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~-------~l~~~~~  188 (386)
T 2ca6_A          116 DFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAK-------TFQSHRL  188 (386)
T ss_dssp             HHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHH-------HHHHCTT
T ss_pred             HHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHH-------HHHhCCC
Confidence            46667778888888888876433222    2            234433  666665 2222   2       4456778


Q ss_pred             cceecccccccccCchh----HH-HHHhcCCCccEEEccCCccCcc--cccchhhhhcCCCCCceEEecCCcCCCC----
Q 038163          124 LEHLDMEFMRIALNTSF----LQ-IISESMSSLKYLSLSYYTLGIN--SSETLNQGLCSLVHLQELYIASNDLRGS----  192 (207)
Q Consensus       124 L~~L~l~~~~n~~~~~~----~~-~l~~~~~~L~~L~l~~n~~~~~--~~i~~~~~~~~~~~L~~L~l~~n~l~~~----  192 (207)
                      |+.|+++  +|.++...    .. .+. .+++|+.|++++|.++..  ..+ +. .+..+++|+.|++++|.+.+.    
T Consensus       189 L~~L~L~--~n~l~~~g~~~l~~~~l~-~~~~L~~L~Ls~n~l~~~g~~~l-~~-~l~~~~~L~~L~L~~n~i~~~~~~~  263 (386)
T 2ca6_A          189 LHTVKMV--QNGIRPEGIEHLLLEGLA-YCQELKVLDLQDNTFTHLGSSAL-AI-ALKSWPNLRELGLNDCLLSARGAAA  263 (386)
T ss_dssp             CCEEECC--SSCCCHHHHHHHHHTTGG-GCTTCCEEECCSSCCHHHHHHHH-HH-HGGGCTTCCEEECTTCCCCHHHHHH
T ss_pred             cCEEECc--CCCCCHhHHHHHHHHHhh-cCCCccEEECcCCCCCcHHHHHH-HH-HHccCCCcCEEECCCCCCchhhHHH
Confidence            8888888  88887432    22 455 678888888888888411  145 55 677888888888888888754    


Q ss_pred             ccccccC--CCCCccCC
Q 038163          193 LPWCMAN--MTSLRILD  207 (207)
Q Consensus       193 ~p~~~~~--l~~L~~l~  207 (207)
                      ++..+..  +++|+.|+
T Consensus       264 l~~~l~~~~~~~L~~L~  280 (386)
T 2ca6_A          264 VVDAFSKLENIGLQTLR  280 (386)
T ss_dssp             HHHHHHTCSSCCCCEEE
T ss_pred             HHHHHhhccCCCeEEEE
Confidence            4455533  67777653

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.69  E-value=4.7e-16  Score=129.34  Aligned_cols=76  Identities=21%  Similarity=0.247  Sum_probs=51.9

Q ss_pred             CCCCCccceecccccccccCchhHHHHHhcCCCccEEEccCCccCcccccchhhhhcCCCCCceEEecCCcCCCCccccc
Q 038163          118 FPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSLSYYTLGINSSETLNQGLCSLVHLQELYIASNDLRGSLPWCM  197 (207)
Q Consensus       118 ~~~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L~l~~n~~~~~~~i~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~  197 (207)
                      +..+++|+.|+++  +|.+++..+  +. .+++|+.|++++|.++   .+ +  .+..+++|+.|++++|++.+..|  +
T Consensus       305 ~~~l~~L~~L~L~--~n~l~~~~~--~~-~l~~L~~L~l~~n~l~---~~-~--~l~~l~~L~~L~l~~n~l~~~~~--~  371 (466)
T 1o6v_A          305 ISNLKNLTYLTLY--FNNISDISP--VS-SLTKLQRLFFYNNKVS---DV-S--SLANLTNINWLSAGHNQISDLTP--L  371 (466)
T ss_dssp             GGGCTTCSEEECC--SSCCSCCGG--GG-GCTTCCEEECCSSCCC---CC-G--GGTTCTTCCEEECCSSCCCBCGG--G
T ss_pred             hcCCCCCCEEECc--CCcCCCchh--hc-cCccCCEeECCCCccC---Cc-h--hhccCCCCCEEeCCCCccCccch--h
Confidence            4556677777777  777765444  45 6777777777777776   44 3  46677778888888887776555  6


Q ss_pred             cCCCCCccC
Q 038163          198 ANMTSLRIL  206 (207)
Q Consensus       198 ~~l~~L~~l  206 (207)
                      ..+++|+.|
T Consensus       372 ~~l~~L~~L  380 (466)
T 1o6v_A          372 ANLTRITQL  380 (466)
T ss_dssp             TTCTTCCEE
T ss_pred             hcCCCCCEE
Confidence            666766654

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.69  E-value=1.5e-16  Score=128.33  Aligned_cols=146  Identities=19%  Similarity=0.125  Sum_probs=118.0

Q ss_pred             CCCCccCceecCcccc-CCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEc
Q 038163            1 MSFNEINNLVVPQGYN-GLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKL   79 (207)
Q Consensus         1 l~~n~~~~~~p~~~~~-~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l   79 (207)
                      |++|.+.+ +++.++. .+++|++|++++|.+  ....+..|..+++|++|++++|.++...+   ..+..+++|++|+|
T Consensus        46 Ls~N~l~~-l~~~~~~~~l~~L~~L~L~~N~i--~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~---~~~~~l~~L~~L~L  119 (361)
T 2xot_A           46 LSHNNLSR-LRAEWTPTRLTNLHSLLLSHNHL--NFISSEAFVPVPNLRYLDLSSNHLHTLDE---FLFSDLQALEVLLL  119 (361)
T ss_dssp             CCSSCCCE-ECTTSSSSCCTTCCEEECCSSCC--CEECTTTTTTCTTCCEEECCSSCCCEECT---TTTTTCTTCCEEEC
T ss_pred             CCCCCCCc-cChhhhhhcccccCEEECCCCcC--CccChhhccCCCCCCEEECCCCcCCcCCH---HHhCCCcCCCEEEC
Confidence            57899985 6667777 999999999999999  45555679999999999999999998766   67889999999999


Q ss_pred             CCCCCChHHHHhhcccccc-----cCCcccceeccccccccCCC---CCCCccceecccccccccCchhHHHHHhcCCC-
Q 038163           80 DDSPLHISLLQSIASIFPL-----LKNLSMIGCEVNGVIRGQDF---PHSKSLEHLDMEFMRIALNTSFLQIISESMSS-  150 (207)
Q Consensus        80 ~~~~~~~~~~~~l~~l~~L-----~~n~~~~~~~~~~~~~~~~~---~~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~~-  150 (207)
                      ++|.+....+..+..+++|     ++|.+++ +|..      .+   ..+++|+.|+++  +|.++...+..+. .++. 
T Consensus       120 ~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~-l~~~------~~~~~~~l~~L~~L~L~--~N~l~~l~~~~~~-~l~~~  189 (361)
T 2xot_A          120 YNNHIVVVDRNAFEDMAQLQKLYLSQNQISR-FPVE------LIKDGNKLPKLMLLDLS--SNKLKKLPLTDLQ-KLPAW  189 (361)
T ss_dssp             CSSCCCEECTTTTTTCTTCCEEECCSSCCCS-CCGG------GTC----CTTCCEEECC--SSCCCCCCHHHHH-HSCHH
T ss_pred             CCCcccEECHHHhCCcccCCEEECCCCcCCe-eCHH------HhcCcccCCcCCEEECC--CCCCCccCHHHhh-hccHh
Confidence            9999986555666666555     7888876 3331      34   568999999999  9999866667777 7876 


Q ss_pred             -ccEEEccCCccC
Q 038163          151 -LKYLSLSYYTLG  162 (207)
Q Consensus       151 -L~~L~l~~n~~~  162 (207)
                       ++.|++++|.+.
T Consensus       190 ~l~~l~l~~N~~~  202 (361)
T 2xot_A          190 VKNGLYLHNNPLE  202 (361)
T ss_dssp             HHTTEECCSSCEE
T ss_pred             hcceEEecCCCcc
Confidence             488999999886

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.67  E-value=5.1e-16  Score=120.02  Aligned_cols=159  Identities=19%  Similarity=0.224  Sum_probs=122.9

Q ss_pred             CCCccCceecCccccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcCC
Q 038163            2 SFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDD   81 (207)
Q Consensus         2 ~~n~~~~~~p~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~~   81 (207)
                      ++|.+.. ++  .+..+++|++|++++|.+   ..++ .+..+++|++|++++|.+++. +    .+..+++|++|++++
T Consensus        27 ~~~~i~~-~~--~~~~l~~L~~L~l~~n~i---~~l~-~l~~l~~L~~L~L~~N~i~~~-~----~l~~l~~L~~L~L~~   94 (263)
T 1xeu_A           27 GKQSVTD-LV--SQKELSGVQNFNGDNSNI---QSLA-GMQFFTNLKELHLSHNQISDL-S----PLKDLTKLEELSVNR   94 (263)
T ss_dssp             TCSCTTS-EE--CHHHHTTCSEEECTTSCC---CCCT-TGGGCTTCCEEECCSSCCCCC-G----GGTTCSSCCEEECCS
T ss_pred             cCCCccc-cc--chhhcCcCcEEECcCCCc---ccch-HHhhCCCCCEEECCCCccCCC-h----hhccCCCCCEEECCC
Confidence            4566664 44  267899999999999999   4455 688899999999999999874 4    378899999999999


Q ss_pred             CCCChHHHHhhcccccc--cCCcccceeccccccccCCCCCCCccceecccccccccCchhHHHHHhcCCCccEEEccCC
Q 038163           82 SPLHISLLQSIASIFPL--LKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSLSYY  159 (207)
Q Consensus        82 ~~~~~~~~~~l~~l~~L--~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L~l~~n  159 (207)
                      |.+...-......++.|  ++|.+++.  .       .+..+++|+.|+++  +|.+++. + .+. .+++|+.|++++|
T Consensus        95 N~l~~l~~~~~~~L~~L~L~~N~l~~~--~-------~l~~l~~L~~L~Ls--~N~i~~~-~-~l~-~l~~L~~L~L~~N  160 (263)
T 1xeu_A           95 NRLKNLNGIPSACLSRLFLDNNELRDT--D-------SLIHLKNLEILSIR--NNKLKSI-V-MLG-FLSKLEVLDLHGN  160 (263)
T ss_dssp             SCCSCCTTCCCSSCCEEECCSSCCSBS--G-------GGTTCTTCCEEECT--TSCCCBC-G-GGG-GCTTCCEEECTTS
T ss_pred             CccCCcCccccCcccEEEccCCccCCC--h-------hhcCcccccEEECC--CCcCCCC-h-HHc-cCCCCCEEECCCC
Confidence            99874211111344444  77777662  2       67788999999999  9998854 3 566 8899999999999


Q ss_pred             ccCcccccchhhhhcCCCCCceEEecCCcCCCC
Q 038163          160 TLGINSSETLNQGLCSLVHLQELYIASNDLRGS  192 (207)
Q Consensus       160 ~~~~~~~i~~~~~~~~~~~L~~L~l~~n~l~~~  192 (207)
                      .++   .+ .  .+..+++|+.|++++|++...
T Consensus       161 ~i~---~~-~--~l~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          161 EIT---NT-G--GLTRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             CCC---BC-T--TSTTCCCCCEEEEEEEEEECC
T ss_pred             cCc---ch-H--HhccCCCCCEEeCCCCcccCC
Confidence            998   54 2  578899999999999998865

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.66  E-value=6.7e-16  Score=128.27  Aligned_cols=72  Identities=21%  Similarity=0.270  Sum_probs=46.9

Q ss_pred             CCCCccCceecCccccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcC
Q 038163            1 MSFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLD   80 (207)
Q Consensus         1 l~~n~~~~~~p~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~   80 (207)
                      +++|.+.+ +| . +..+++|++|++++|.++   .++  ++.+++|++|++++|.+++.      .+..+++|++|+++
T Consensus        49 Ls~n~l~~-~~-~-l~~l~~L~~L~Ls~n~l~---~~~--~~~l~~L~~L~Ls~N~l~~~------~~~~l~~L~~L~L~  114 (457)
T 3bz5_A           49 CHNSSITD-MT-G-IEKLTGLTKLICTSNNIT---TLD--LSQNTNLTYLACDSNKLTNL------DVTPLTKLTYLNCD  114 (457)
T ss_dssp             CCSSCCCC-CT-T-GGGCTTCSEEECCSSCCS---CCC--CTTCTTCSEEECCSSCCSCC------CCTTCTTCCEEECC
T ss_pred             ccCCCccc-Ch-h-hcccCCCCEEEccCCcCC---eEc--cccCCCCCEEECcCCCCcee------ecCCCCcCCEEECC
Confidence            45677775 44 3 577777777777777772   233  66777777777777777653      24556666666666


Q ss_pred             CCCCCh
Q 038163           81 DSPLHI   86 (207)
Q Consensus        81 ~~~~~~   86 (207)
                      +|.+.+
T Consensus       115 ~N~l~~  120 (457)
T 3bz5_A          115 TNKLTK  120 (457)
T ss_dssp             SSCCSC
T ss_pred             CCcCCe
Confidence            666653

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.66  E-value=3.8e-16  Score=133.74  Aligned_cols=170  Identities=22%  Similarity=0.345  Sum_probs=135.3

Q ss_pred             CCCccCceecCccccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcCC
Q 038163            2 SFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDD   81 (207)
Q Consensus         2 ~~n~~~~~~p~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~~   81 (207)
                      .++.+...++   +..+++|+.|++++|.+   ..++ .+..+++|+.|++++|.+++. +    .+..+++|++|+|++
T Consensus        29 ~~~~i~~~~~---~~~L~~L~~L~l~~n~i---~~l~-~l~~l~~L~~L~Ls~N~l~~~-~----~l~~l~~L~~L~Ls~   96 (605)
T 1m9s_A           29 KKKSVTDAVT---QNELNSIDQIIANNSDI---KSVQ-GIQYLPNVTKLFLNGNKLTDI-K----PLTNLKNLGWLFLDE   96 (605)
T ss_dssp             TCSCTTSEEC---HHHHTTCCCCBCTTCCC---CCCT-TGGGCTTCCEEECTTSCCCCC-G----GGGGCTTCCEEECCS
T ss_pred             cCCCcccccc---hhcCCCCCEEECcCCCC---CCCh-HHccCCCCCEEEeeCCCCCCC-h----hhccCCCCCEEECcC
Confidence            3455565443   46789999999999999   3444 588999999999999999875 3    378899999999999


Q ss_pred             CCCChHHHHhhcccccc-----cCCcccceeccccccccCCCCCCCccceecccccccccCchhHHHHHhcCCCccEEEc
Q 038163           82 SPLHISLLQSIASIFPL-----LKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSL  156 (207)
Q Consensus        82 ~~~~~~~~~~l~~l~~L-----~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L~l  156 (207)
                      |.+..  +..+..+++|     ++|.+.+ + .       .+..+++|+.|+++  +|.+++.  ..+. .+++|+.|++
T Consensus        97 N~l~~--l~~l~~l~~L~~L~Ls~N~l~~-l-~-------~l~~l~~L~~L~Ls--~N~l~~l--~~l~-~l~~L~~L~L  160 (605)
T 1m9s_A           97 NKIKD--LSSLKDLKKLKSLSLEHNGISD-I-N-------GLVHLPQLESLYLG--NNKITDI--TVLS-RLTKLDTLSL  160 (605)
T ss_dssp             SCCCC--CTTSTTCTTCCEEECTTSCCCC-C-G-------GGGGCTTCSEEECC--SSCCCCC--GGGG-SCTTCSEEEC
T ss_pred             CCCCC--ChhhccCCCCCEEEecCCCCCC-C-c-------cccCCCccCEEECC--CCccCCc--hhhc-ccCCCCEEEC
Confidence            99874  2355555555     7777765 2 3       67889999999999  9999864  5566 8999999999


Q ss_pred             cCCccCcccccchhhhhcCCCCCceEEecCCcCCCCccccccCCCCCccCC
Q 038163          157 SYYTLGINSSETLNQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILD  207 (207)
Q Consensus       157 ~~n~~~~~~~i~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~  207 (207)
                      ++|.+.   .+ +.  +..+++|+.|+|++|.+.+.  ..+..+++|+.|+
T Consensus       161 s~N~l~---~~-~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~  203 (605)
T 1m9s_A          161 EDNQIS---DI-VP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLE  203 (605)
T ss_dssp             CSSCCC---CC-GG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEE
T ss_pred             cCCcCC---Cc-hh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEE
Confidence            999998   54 32  78899999999999999863  4588888888764

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.65  E-value=1.8e-16  Score=125.17  Aligned_cols=173  Identities=14%  Similarity=0.116  Sum_probs=123.9

Q ss_pred             CCCCcEEecCCCcccCCCcchhhh--cCCCCCCEEEcCCCcCCcccccc-hhcccCCCCccEEEcCCCCCChHHHHhhcc
Q 038163           18 LRKLKSLDLSGVGVRDGSKLLQSI--GSFSSLNSLYLSSNNFTETVTIT-TQELHNFTNMEYLKLDDSPLHISLLQSIAS   94 (207)
Q Consensus        18 l~~L~~L~ls~n~i~~~~~~~~~~--~~l~~L~~L~l~~n~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~   94 (207)
                      +++|++|++++|.+  ....|..+  ..+++|++|++++|.+++..+.. ...+..+++|++|++++|.+....+..+..
T Consensus        90 ~~~L~~L~l~~n~l--~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~  167 (310)
T 4glp_A           90 YSRLKELTLEDLKI--TGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRA  167 (310)
T ss_dssp             HSCCCEEEEESCCC--BSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCC
T ss_pred             cCceeEEEeeCCEe--ccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhcc
Confidence            45689999999998  56777776  78899999999999988643310 023346889999999999987655556655


Q ss_pred             cccc-----cCCcccce--eccccccccCCCCCCCccceecccccccccCch--hHHH-HHhcCCCccEEEccCCccCcc
Q 038163           95 IFPL-----LKNLSMIG--CEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTS--FLQI-ISESMSSLKYLSLSYYTLGIN  164 (207)
Q Consensus        95 l~~L-----~~n~~~~~--~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~--~~~~-l~~~~~~L~~L~l~~n~~~~~  164 (207)
                      +++|     ++|.+.+.  ++..     ..+..+++|++|+++  +|.++..  .+.. +. .+++|++|++++|.+.  
T Consensus       168 l~~L~~L~Ls~N~l~~~~~~~~~-----~~~~~l~~L~~L~Ls--~N~l~~l~~~~~~l~~-~l~~L~~L~Ls~N~l~--  237 (310)
T 4glp_A          168 FPALTSLDLSDNPGLGERGLMAA-----LCPHKFPAIQNLALR--NTGMETPTGVCAALAA-AGVQPHSLDLSHNSLR--  237 (310)
T ss_dssp             CTTCCEEECCSCTTCHHHHHHTT-----SCTTSSCCCCSCBCC--SSCCCCHHHHHHHHHH-HTCCCSSEECTTSCCC--
T ss_pred             CCCCCEEECCCCCCccchhhhHH-----HhhhcCCCCCEEECC--CCCCCchHHHHHHHHh-cCCCCCEEECCCCCCC--
Confidence            5555     77776542  2210     034678899999999  9998732  2222 45 7899999999999998  


Q ss_pred             cccchhhhhcCC---CCCceEEecCCcCCCCccccccCCCCCccCC
Q 038163          165 SSETLNQGLCSL---VHLQELYIASNDLRGSLPWCMANMTSLRILD  207 (207)
Q Consensus       165 ~~i~~~~~~~~~---~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~  207 (207)
                      +.+ |. .+..+   ++|+.|++++|++. .+|..+.  ++|++||
T Consensus       238 ~~~-p~-~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~  278 (310)
T 4glp_A          238 ATV-NP-SAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLD  278 (310)
T ss_dssp             CCC-CS-CCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEE
T ss_pred             ccc-hh-hHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEE
Confidence            555 54 55555   69999999999998 5676553  5666553

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.65  E-value=8.1e-16  Score=127.80  Aligned_cols=164  Identities=18%  Similarity=0.176  Sum_probs=104.1

Q ss_pred             CCCCccCceecCccccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcC
Q 038163            1 MSFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLD   80 (207)
Q Consensus         1 l~~n~~~~~~p~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~   80 (207)
                      |++|.+.+ +|   +..+++|++|++++|.+.  . ++  ++.+++|++|++++|.+++.      .+..+++|++|+++
T Consensus        71 Ls~n~l~~-~~---~~~l~~L~~L~Ls~N~l~--~-~~--~~~l~~L~~L~L~~N~l~~l------~~~~l~~L~~L~l~  135 (457)
T 3bz5_A           71 CTSNNITT-LD---LSQNTNLTYLACDSNKLT--N-LD--VTPLTKLTYLNCDTNKLTKL------DVSQNPLLTYLNCA  135 (457)
T ss_dssp             CCSSCCSC-CC---CTTCTTCSEEECCSSCCS--C-CC--CTTCTTCCEEECCSSCCSCC------CCTTCTTCCEEECT
T ss_pred             ccCCcCCe-Ec---cccCCCCCEEECcCCCCc--e-ee--cCCCCcCCEEECCCCcCCee------cCCCCCcCCEEECC
Confidence            35566664 33   566777777777777762  2 22  56667777777777766652      24566667777777


Q ss_pred             CCCCChHHHHhhcccccc-----cCCcccceeccccccccCCCCCCCccceecccccccccCchhHHHHHhcCCCccEEE
Q 038163           81 DSPLHISLLQSIASIFPL-----LKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLS  155 (207)
Q Consensus        81 ~~~~~~~~~~~l~~l~~L-----~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L~  155 (207)
                      +|.+++..   +..+++|     ++|...+.+         .+..+++|+.|+++  +|.+++ ++  +. .+++|+.|+
T Consensus       136 ~N~l~~l~---l~~l~~L~~L~l~~n~~~~~~---------~~~~l~~L~~L~ls--~n~l~~-l~--l~-~l~~L~~L~  197 (457)
T 3bz5_A          136 RNTLTEID---VSHNTQLTELDCHLNKKITKL---------DVTPQTQLTTLDCS--FNKITE-LD--VS-QNKLLNRLN  197 (457)
T ss_dssp             TSCCSCCC---CTTCTTCCEEECTTCSCCCCC---------CCTTCTTCCEEECC--SSCCCC-CC--CT-TCTTCCEEE
T ss_pred             CCccceec---cccCCcCCEEECCCCCccccc---------ccccCCcCCEEECC--CCccce-ec--cc-cCCCCCEEE
Confidence            77666421   3333333     444332222         34566778888888  777775 33  55 677888888


Q ss_pred             ccCCccCcccccchhhhhcCCCCCceEEecCCcCCCCccccccCCCCCccCC
Q 038163          156 LSYYTLGINSSETLNQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILD  207 (207)
Q Consensus       156 l~~n~~~~~~~i~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~  207 (207)
                      +++|.++   .+    .+..+++|+.|++++|++.+ +|  +..+++|+.|+
T Consensus       198 l~~N~l~---~~----~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~  239 (457)
T 3bz5_A          198 CDTNNIT---KL----DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFD  239 (457)
T ss_dssp             CCSSCCS---CC----CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEE
T ss_pred             CcCCcCC---ee----ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEE
Confidence            8888887   44    35677888888888888886 45  66777777653

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.65  E-value=3e-15  Score=124.45  Aligned_cols=76  Identities=25%  Similarity=0.395  Sum_probs=53.0

Q ss_pred             CCCCCccceecccccccccCchhHHHHHhcCCCccEEEccCCccCcccccchhhhhcCCCCCceEEecCCcCCCCccccc
Q 038163          118 FPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSLSYYTLGINSSETLNQGLCSLVHLQELYIASNDLRGSLPWCM  197 (207)
Q Consensus       118 ~~~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L~l~~n~~~~~~~i~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~  197 (207)
                      +..+++|+.|+++  +|.+++..+  +. .+++|+.|++++|.+.   .+ +  .+..+++|+.|++++|++.+.  ..+
T Consensus       283 ~~~l~~L~~L~L~--~n~l~~~~~--~~-~l~~L~~L~L~~n~l~---~~-~--~~~~l~~L~~L~l~~n~l~~~--~~l  349 (466)
T 1o6v_A          283 LAGLTALTNLELN--ENQLEDISP--IS-NLKNLTYLTLYFNNIS---DI-S--PVSSLTKLQRLFFYNNKVSDV--SSL  349 (466)
T ss_dssp             GTTCTTCSEEECC--SSCCSCCGG--GG-GCTTCSEEECCSSCCS---CC-G--GGGGCTTCCEEECCSSCCCCC--GGG
T ss_pred             ccCCCccCeEEcC--CCcccCchh--hc-CCCCCCEEECcCCcCC---Cc-h--hhccCccCCEeECCCCccCCc--hhh
Confidence            4566777777777  777765433  55 6778888888888777   33 2  256778888888888887754  456


Q ss_pred             cCCCCCccC
Q 038163          198 ANMTSLRIL  206 (207)
Q Consensus       198 ~~l~~L~~l  206 (207)
                      ..+++|+.|
T Consensus       350 ~~l~~L~~L  358 (466)
T 1o6v_A          350 ANLTNINWL  358 (466)
T ss_dssp             TTCTTCCEE
T ss_pred             ccCCCCCEE
Confidence            777777765

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.65  E-value=8.5e-16  Score=108.55  Aligned_cols=124  Identities=17%  Similarity=0.211  Sum_probs=72.4

Q ss_pred             CCCCEEEcCCCcCC-cccccchhcccCCCCccEEEcCCCCCChHHHHhhcccccccCCcccceeccccccccCCCCCCCc
Q 038163           45 SSLNSLYLSSNNFT-ETVTITTQELHNFTNMEYLKLDDSPLHISLLQSIASIFPLLKNLSMIGCEVNGVIRGQDFPHSKS  123 (207)
Q Consensus        45 ~~L~~L~l~~n~~~-~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~n~~~~~~~~~~~~~~~~~~~~~~  123 (207)
                      ++++.|++++|.++ +.+|   ..+..+++|++|++++|.+..                    + .       .+..+++
T Consensus        17 ~~l~~L~l~~n~l~~~~~~---~~~~~l~~L~~L~l~~n~l~~--------------------~-~-------~~~~l~~   65 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLE---GLTDEFEELEFLSTINVGLTS--------------------I-A-------NLPKLNK   65 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCC---SCCTTCTTCCEEECTTSCCCC--------------------C-T-------TCCCCTT
T ss_pred             ccCeEEEccCCcCChhHHH---HHHhhcCCCcEEECcCCCCCC--------------------c-h-------hhhcCCC
Confidence            45666666666655 3444   445556666666666666541                    1 1       4555566


Q ss_pred             cceecccccccccCchhHHHHHhcCCCccEEEccCCccCcccccch--hhhhcCCCCCceEEecCCcCCCCcc---cccc
Q 038163          124 LEHLDMEFMRIALNTSFLQIISESMSSLKYLSLSYYTLGINSSETL--NQGLCSLVHLQELYIASNDLRGSLP---WCMA  198 (207)
Q Consensus       124 L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L~l~~n~~~~~~~i~~--~~~~~~~~~L~~L~l~~n~l~~~~p---~~~~  198 (207)
                      |++|+++  +|.+++..|..+. .+++|+.|++++|.++   .+ +  . .+..+++|+.|++++|.+.+..+   ..+.
T Consensus        66 L~~L~Ls--~n~i~~~~~~~~~-~l~~L~~L~ls~N~i~---~~-~~~~-~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~  137 (149)
T 2je0_A           66 LKKLELS--DNRVSGGLEVLAE-KCPNLTHLNLSGNKIK---DL-STIE-PLKKLENLKSLDLFNCEVTNLNDYRENVFK  137 (149)
T ss_dssp             CCEEECC--SSCCCSCTHHHHH-HCTTCCEEECTTSCCC---SH-HHHG-GGGGCTTCCEEECTTCGGGGSTTHHHHHHH
T ss_pred             CCEEECC--CCcccchHHHHhh-hCCCCCEEECCCCcCC---Ch-HHHH-HHhhCCCCCEEeCcCCcccchHHHHHHHHH
Confidence            6666666  6666654555555 5666666666666665   33 2  3 56666666666666666665433   3556


Q ss_pred             CCCCCccCC
Q 038163          199 NMTSLRILD  207 (207)
Q Consensus       199 ~l~~L~~l~  207 (207)
                      .+++|+.||
T Consensus       138 ~l~~L~~L~  146 (149)
T 2je0_A          138 LLPQLTYLD  146 (149)
T ss_dssp             HCTTCCEET
T ss_pred             HCCCccccc
Confidence            666666554

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.63  E-value=1.3e-16  Score=132.07  Aligned_cols=68  Identities=21%  Similarity=0.194  Sum_probs=37.8

Q ss_pred             CCCCCccceecccccccccCchhHHHHHhc----CCCccEEEccCCccCccc----ccchhhhhcCCCCCceEEecCCcC
Q 038163          118 FPHSKSLEHLDMEFMRIALNTSFLQIISES----MSSLKYLSLSYYTLGINS----SETLNQGLCSLVHLQELYIASNDL  189 (207)
Q Consensus       118 ~~~~~~L~~L~l~~~~n~~~~~~~~~l~~~----~~~L~~L~l~~n~~~~~~----~i~~~~~~~~~~~L~~L~l~~n~l  189 (207)
                      +..+++|+.|+++  +|.+++..+..+.+.    .++|+.|++++|.++  +    .+ +. .+..+++|+.|++++|++
T Consensus       337 l~~~~~L~~L~Ls--~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~--~~~~~~l-~~-~l~~~~~L~~L~l~~N~i  410 (461)
T 1z7x_W          337 LAQNRFLLELQIS--NNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVS--DSSCSSL-AA-TLLANHSLRELDLSNNCL  410 (461)
T ss_dssp             HHHCSSCCEEECC--SSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCC--HHHHHHH-HH-HHHHCCCCCEEECCSSSC
T ss_pred             HhhCCCccEEEcc--CCccccccHHHHHHHHcCCCCceEEEECCCCCCC--hhhHHHH-HH-HHHhCCCccEEECCCCCC
Confidence            3345566666666  666654444433311    446666666666665  3    34 43 555566666666666666


Q ss_pred             CC
Q 038163          190 RG  191 (207)
Q Consensus       190 ~~  191 (207)
                      .+
T Consensus       411 ~~  412 (461)
T 1z7x_W          411 GD  412 (461)
T ss_dssp             CH
T ss_pred             CH
Confidence            53

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.61  E-value=2.8e-15  Score=108.00  Aligned_cols=139  Identities=17%  Similarity=0.161  Sum_probs=104.4

Q ss_pred             CCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcCCCCCChHHHHhhcccc
Q 038163           17 GLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDDSPLHISLLQSIASIF   96 (207)
Q Consensus        17 ~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~   96 (207)
                      ..+++++|++++|.+.+ ..+|..+..+++|++|++++|.++.. +    .+..+++|++|++++|.+.+.         
T Consensus        22 ~~~~L~~L~l~~n~l~~-~~i~~~~~~l~~L~~L~l~~n~l~~~-~----~~~~l~~L~~L~Ls~N~l~~~---------   86 (168)
T 2ell_A           22 TPAAVRELVLDNCKSND-GKIEGLTAEFVNLEFLSLINVGLISV-S----NLPKLPKLKKLELSENRIFGG---------   86 (168)
T ss_dssp             CTTSCSEEECCSCBCBT-TBCSSCCGGGGGCCEEEEESSCCCCC-S----SCCCCSSCCEEEEESCCCCSC---------
T ss_pred             CcccCCEEECCCCCCCh-hhHHHHHHhCCCCCEEeCcCCCCCCh-h----hhccCCCCCEEECcCCcCchH---------
Confidence            35778889999998821 46777778888999999999888865 4    677888899999988888721         


Q ss_pred             cccCCcccceeccccccccCCCCCCCccceecccccccccCchh-HHHHHhcCCCccEEEccCCccCcccccchh---hh
Q 038163           97 PLLKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSF-LQIISESMSSLKYLSLSYYTLGINSSETLN---QG  172 (207)
Q Consensus        97 ~L~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~~-~~~l~~~~~~L~~L~l~~n~~~~~~~i~~~---~~  172 (207)
                                +|.       .+..+++|++|+++  +|.+++.. +..+. .+++|+.|++++|.++   .+ +.   ..
T Consensus        87 ----------~~~-------~~~~l~~L~~L~Ls--~N~l~~~~~~~~l~-~l~~L~~L~l~~N~l~---~~-~~~~~~~  142 (168)
T 2ell_A           87 ----------LDM-------LAEKLPNLTHLNLS--GNKLKDISTLEPLK-KLECLKSLDLFNCEVT---NL-NDYRESV  142 (168)
T ss_dssp             ----------CCH-------HHHHCTTCCEEECB--SSSCCSSGGGGGGS-SCSCCCEEECCSSGGG---TS-TTHHHHH
T ss_pred             ----------HHH-------HHhhCCCCCEEecc--CCccCcchhHHHHh-cCCCCCEEEeeCCcCc---ch-HHHHHHH
Confidence                      232       34457788999999  88887532 25666 7888999999999887   44 32   26


Q ss_pred             hcCCCCCceEEecCCcCCCCccc
Q 038163          173 LCSLVHLQELYIASNDLRGSLPW  195 (207)
Q Consensus       173 ~~~~~~L~~L~l~~n~l~~~~p~  195 (207)
                      +..+++|+.|++++|.+.. +|.
T Consensus       143 ~~~l~~L~~L~l~~n~~~~-~~~  164 (168)
T 2ell_A          143 FKLLPQLTYLDGYDREDQE-APD  164 (168)
T ss_dssp             HTTCSSCCEETTEETTSCB-CCS
T ss_pred             HHhCccCcEecCCCCChhh-ccc
Confidence            7888899999999988763 443

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.61  E-value=2.2e-15  Score=111.07  Aligned_cols=123  Identities=15%  Similarity=0.144  Sum_probs=82.7

Q ss_pred             CCCccCceecCccccCCCCCcEEecCCCcccCCCcchh-hhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcC
Q 038163            2 SFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQ-SIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLD   80 (207)
Q Consensus         2 ~~n~~~~~~p~~~~~~l~~L~~L~ls~n~i~~~~~~~~-~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~   80 (207)
                      ++|.+. .+|..+ .  .++++|++++|.+  ....+. .+..+++|++|++++|.+++..|   ..+..+++|++|+++
T Consensus        16 s~~~l~-~ip~~~-~--~~l~~L~l~~n~i--~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~---~~~~~l~~L~~L~Ls   86 (192)
T 1w8a_A           16 TGRGLK-EIPRDI-P--LHTTELLLNDNEL--GRISSDGLFGRLPHLVKLELKRNQLTGIEP---NAFEGASHIQELQLG   86 (192)
T ss_dssp             TTSCCS-SCCSCC-C--TTCSEEECCSCCC--CSBCCSCSGGGCTTCCEEECCSSCCCCBCT---TTTTTCTTCCEEECC
T ss_pred             CCCCcC-cCccCC-C--CCCCEEECCCCcC--CccCCccccccCCCCCEEECCCCCCCCcCH---hHcCCcccCCEEECC
Confidence            456664 566543 2  2677777777777  232222 36677777777777777777666   566777777777777


Q ss_pred             CCCCChHHHHhhcccccccCCcccceeccccccccCCCCCCCccceecccccccccCchhHHHHHhcCCCccEEEccCCc
Q 038163           81 DSPLHISLLQSIASIFPLLKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSLSYYT  160 (207)
Q Consensus        81 ~~~~~~~~~~~l~~l~~L~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L~l~~n~  160 (207)
                      +|.+.                   +..+.       .+..+++|++|+++  +|.+++..+..+. .+++|+.|++++|.
T Consensus        87 ~N~l~-------------------~~~~~-------~~~~l~~L~~L~L~--~N~l~~~~~~~~~-~l~~L~~L~L~~N~  137 (192)
T 1w8a_A           87 ENKIK-------------------EISNK-------MFLGLHQLKTLNLY--DNQISCVMPGSFE-HLNSLTSLNLASNP  137 (192)
T ss_dssp             SCCCC-------------------EECSS-------SSTTCTTCCEEECC--SSCCCEECTTSST-TCTTCCEEECTTCC
T ss_pred             CCcCC-------------------ccCHH-------HhcCCCCCCEEECC--CCcCCeeCHHHhh-cCCCCCEEEeCCCC
Confidence            77765                   11222       56677788888888  8887766666666 77788888888887


Q ss_pred             cC
Q 038163          161 LG  162 (207)
Q Consensus       161 ~~  162 (207)
                      +.
T Consensus       138 l~  139 (192)
T 1w8a_A          138 FN  139 (192)
T ss_dssp             BC
T ss_pred             cc
Confidence            77

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.61  E-value=2.4e-15  Score=127.82  Aligned_cols=166  Identities=16%  Similarity=0.168  Sum_probs=88.4

Q ss_pred             CCCCccCceecCccccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcC
Q 038163            1 MSFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLD   80 (207)
Q Consensus         1 l~~n~~~~~~p~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~   80 (207)
                      |++|.+.+ +|+.+   .++|++|++++|.+   ..+|   ..+++|++|++++|.+++ +|   . +..  +|++|+++
T Consensus        66 Ls~n~L~~-lp~~l---~~~L~~L~Ls~N~l---~~ip---~~l~~L~~L~Ls~N~l~~-ip---~-l~~--~L~~L~Ls  128 (571)
T 3cvr_A           66 LNRLNLSS-LPDNL---PPQITVLEITQNAL---ISLP---ELPASLEYLDACDNRLST-LP---E-LPA--SLKHLDVD  128 (571)
T ss_dssp             CCSSCCSC-CCSCC---CTTCSEEECCSSCC---SCCC---CCCTTCCEEECCSSCCSC-CC---C-CCT--TCCEEECC
T ss_pred             eCCCCCCc-cCHhH---cCCCCEEECcCCCC---cccc---cccCCCCEEEccCCCCCC-cc---h-hhc--CCCEEECC
Confidence            45677775 66554   26677777777777   3455   446777777777777776 45   3 332  66666666


Q ss_pred             CCCCChHHHHhhcccccc--cCCcccceeccc----ccccc--------CCCCCCCccceecccccccccCchhHHHHHh
Q 038163           81 DSPLHISLLQSIASIFPL--LKNLSMIGCEVN----GVIRG--------QDFPHSKSLEHLDMEFMRIALNTSFLQIISE  146 (207)
Q Consensus        81 ~~~~~~~~~~~l~~l~~L--~~n~~~~~~~~~----~~~~~--------~~~~~~~~L~~L~l~~~~n~~~~~~~~~l~~  146 (207)
                      +|.+++ ++..+..+..|  ++|.+++ +|..    ..+++        ..+.  ++|+.|+++  +|.++ .+|. +. 
T Consensus       129 ~N~l~~-lp~~l~~L~~L~Ls~N~l~~-lp~~l~~L~~L~Ls~N~L~~lp~l~--~~L~~L~Ls--~N~L~-~lp~-~~-  199 (571)
T 3cvr_A          129 NNQLTM-LPELPALLEYINADNNQLTM-LPELPTSLEVLSVRNNQLTFLPELP--ESLEALDVS--TNLLE-SLPA-VP-  199 (571)
T ss_dssp             SSCCSC-CCCCCTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCSCCCCCC--TTCCEEECC--SSCCS-SCCC-CC-
T ss_pred             CCcCCC-CCCcCccccEEeCCCCccCc-CCCcCCCcCEEECCCCCCCCcchhh--CCCCEEECc--CCCCC-chhh-HH-
Confidence            666553 22222233333  4555443 2210    00000        0111  456666666  66555 3333 22 


Q ss_pred             cCCCc-------cEEEccCCccCcccccchhhhhcCCCCCceEEecCCcCCCCccccccC
Q 038163          147 SMSSL-------KYLSLSYYTLGINSSETLNQGLCSLVHLQELYIASNDLRGSLPWCMAN  199 (207)
Q Consensus       147 ~~~~L-------~~L~l~~n~~~~~~~i~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~  199 (207)
                      .  +|       +.|++++|.++   .+ |. .+..+++|+.|++++|++.+.+|..+..
T Consensus       200 ~--~L~~~~~~L~~L~Ls~N~l~---~l-p~-~l~~l~~L~~L~L~~N~l~~~~p~~l~~  252 (571)
T 3cvr_A          200 V--RNHHSEETEIFFRCRENRIT---HI-PE-NILSLDPTCTIILEDNPLSSRIRESLSQ  252 (571)
T ss_dssp             ----------CCEEEECCSSCCC---CC-CG-GGGGSCTTEEEECCSSSCCHHHHHHHHH
T ss_pred             H--hhhcccccceEEecCCCcce---ec-CH-HHhcCCCCCEEEeeCCcCCCcCHHHHHH
Confidence            1  34       66666666665   55 55 4555666666666666666655555544

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.61  E-value=7.2e-15  Score=113.56  Aligned_cols=133  Identities=18%  Similarity=0.204  Sum_probs=107.2

Q ss_pred             CCCCccCceecCccccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcC
Q 038163            1 MSFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLD   80 (207)
Q Consensus         1 l~~n~~~~~~p~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~   80 (207)
                      +++|.+. .+|  .+..+++|++|++++|.+   ..++. +..+++|++|++++|.+++. |    .+.. ++|++|+++
T Consensus        48 l~~n~i~-~l~--~l~~l~~L~~L~L~~N~i---~~~~~-l~~l~~L~~L~L~~N~l~~l-~----~~~~-~~L~~L~L~  114 (263)
T 1xeu_A           48 GDNSNIQ-SLA--GMQFFTNLKELHLSHNQI---SDLSP-LKDLTKLEELSVNRNRLKNL-N----GIPS-ACLSRLFLD  114 (263)
T ss_dssp             CTTSCCC-CCT--TGGGCTTCCEEECCSSCC---CCCGG-GTTCSSCCEEECCSSCCSCC-T----TCCC-SSCCEEECC
T ss_pred             CcCCCcc-cch--HHhhCCCCCEEECCCCcc---CCChh-hccCCCCCEEECCCCccCCc-C----cccc-CcccEEEcc
Confidence            4677777 466  378999999999999999   34554 89999999999999999974 3    2333 899999999


Q ss_pred             CCCCChHHHHhhcccccc-----cCCcccceeccccccccCCCCCCCccceecccccccccCchhHHHHHhcCCCccEEE
Q 038163           81 DSPLHISLLQSIASIFPL-----LKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLS  155 (207)
Q Consensus        81 ~~~~~~~~~~~l~~l~~L-----~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L~  155 (207)
                      +|.+++.  ..+..+++|     ++|.+++. +        .+..+++|+.|+++  +|.+++.  ..+. .+++|+.|+
T Consensus       115 ~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~--------~l~~l~~L~~L~L~--~N~i~~~--~~l~-~l~~L~~L~  178 (263)
T 1xeu_A          115 NNELRDT--DSLIHLKNLEILSIRNNKLKSI-V--------MLGFLSKLEVLDLH--GNEITNT--GGLT-RLKKVNWID  178 (263)
T ss_dssp             SSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G--------GGGGCTTCCEEECT--TSCCCBC--TTST-TCCCCCEEE
T ss_pred             CCccCCC--hhhcCcccccEEECCCCcCCCC-h--------HHccCCCCCEEECC--CCcCcch--HHhc-cCCCCCEEe
Confidence            9998853  345555555     78888763 2        67788999999999  9999865  5566 889999999


Q ss_pred             ccCCccC
Q 038163          156 LSYYTLG  162 (207)
Q Consensus       156 l~~n~~~  162 (207)
                      +++|.+.
T Consensus       179 l~~N~~~  185 (263)
T 1xeu_A          179 LTGQKCV  185 (263)
T ss_dssp             EEEEEEE
T ss_pred             CCCCccc
Confidence            9999997

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.61  E-value=8.5e-16  Score=110.72  Aligned_cols=127  Identities=18%  Similarity=0.214  Sum_probs=102.3

Q ss_pred             CCCCCCEEEcCCCcCC-cccccchhcccCCCCccEEEcCCCCCChHHHHhhcccccccCCcccceeccccccccCCCCCC
Q 038163           43 SFSSLNSLYLSSNNFT-ETVTITTQELHNFTNMEYLKLDDSPLHISLLQSIASIFPLLKNLSMIGCEVNGVIRGQDFPHS  121 (207)
Q Consensus        43 ~l~~L~~L~l~~n~~~-~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~n~~~~~~~~~~~~~~~~~~~~  121 (207)
                      ..++|+.|++++|.++ +.+|   ..+..+++|++|++++|.+.                    .+ .       .+..+
T Consensus        22 ~~~~L~~L~l~~n~l~~~~i~---~~~~~l~~L~~L~l~~n~l~--------------------~~-~-------~~~~l   70 (168)
T 2ell_A           22 TPAAVRELVLDNCKSNDGKIE---GLTAEFVNLEFLSLINVGLI--------------------SV-S-------NLPKL   70 (168)
T ss_dssp             CTTSCSEEECCSCBCBTTBCS---SCCGGGGGCCEEEEESSCCC--------------------CC-S-------SCCCC
T ss_pred             CcccCCEEECCCCCCChhhHH---HHHHhCCCCCEEeCcCCCCC--------------------Ch-h-------hhccC
Confidence            4578999999999988 5566   56778899999999999876                    12 2       67788


Q ss_pred             CccceecccccccccCchhHHHHHhcCCCccEEEccCCccCcccccchh-hhhcCCCCCceEEecCCcCCCCcc---ccc
Q 038163          122 KSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSLSYYTLGINSSETLN-QGLCSLVHLQELYIASNDLRGSLP---WCM  197 (207)
Q Consensus       122 ~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L~l~~n~~~~~~~i~~~-~~~~~~~~L~~L~l~~n~l~~~~p---~~~  197 (207)
                      ++|++|+++  +|.+++..+..+. .+++|+.|++++|.++   .+ +. ..+..+++|+.|++++|.+.+..+   ..+
T Consensus        71 ~~L~~L~Ls--~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~---~~-~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~  143 (168)
T 2ell_A           71 PKLKKLELS--ENRIFGGLDMLAE-KLPNLTHLNLSGNKLK---DI-STLEPLKKLECLKSLDLFNCEVTNLNDYRESVF  143 (168)
T ss_dssp             SSCCEEEEE--SCCCCSCCCHHHH-HCTTCCEEECBSSSCC---SS-GGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHH
T ss_pred             CCCCEEECc--CCcCchHHHHHHh-hCCCCCEEeccCCccC---cc-hhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHH
Confidence            899999999  9999866777776 7999999999999998   54 41 278889999999999999986544   478


Q ss_pred             cCCCCCccCC
Q 038163          198 ANMTSLRILD  207 (207)
Q Consensus       198 ~~l~~L~~l~  207 (207)
                      ..+++|+.||
T Consensus       144 ~~l~~L~~L~  153 (168)
T 2ell_A          144 KLLPQLTYLD  153 (168)
T ss_dssp             TTCSSCCEET
T ss_pred             HhCccCcEec
Confidence            8888888765

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.60  E-value=1.8e-15  Score=106.92  Aligned_cols=130  Identities=19%  Similarity=0.168  Sum_probs=104.8

Q ss_pred             CCCCCcEEecCCCcccCC-CcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcCCCCCChHHHHhhccc
Q 038163           17 GLRKLKSLDLSGVGVRDG-SKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDDSPLHISLLQSIASI   95 (207)
Q Consensus        17 ~l~~L~~L~ls~n~i~~~-~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l   95 (207)
                      ..+++++|++++|.+  . ..+|..+..+++|++|++++|.+++. +    .+..+++|++|++++|.+.+.        
T Consensus        15 ~~~~l~~L~l~~n~l--~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~----~~~~l~~L~~L~Ls~n~i~~~--------   79 (149)
T 2je0_A           15 TPSDVKELVLDNSRS--NEGKLEGLTDEFEELEFLSTINVGLTSI-A----NLPKLNKLKKLELSDNRVSGG--------   79 (149)
T ss_dssp             CGGGCSEEECTTCBC--BTTBCCSCCTTCTTCCEEECTTSCCCCC-T----TCCCCTTCCEEECCSSCCCSC--------
T ss_pred             CCccCeEEEccCCcC--ChhHHHHHHhhcCCCcEEECcCCCCCCc-h----hhhcCCCCCEEECCCCcccch--------
Confidence            457799999999999  4 47888889999999999999999876 4    788899999999999998732        


Q ss_pred             ccccCCcccceeccccccccCCCCCCCccceecccccccccCch-hHHHHHhcCCCccEEEccCCccCcccccchh---h
Q 038163           96 FPLLKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTS-FLQIISESMSSLKYLSLSYYTLGINSSETLN---Q  171 (207)
Q Consensus        96 ~~L~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~-~~~~l~~~~~~L~~L~l~~n~~~~~~~i~~~---~  171 (207)
                                 +|.       .+..+++|++|+++  +|.+++. .+..+. .+++|+.|++++|.++   .+ +.   .
T Consensus        80 -----------~~~-------~~~~l~~L~~L~ls--~N~i~~~~~~~~~~-~l~~L~~L~l~~N~l~---~~-~~~~~~  134 (149)
T 2je0_A           80 -----------LEV-------LAEKCPNLTHLNLS--GNKIKDLSTIEPLK-KLENLKSLDLFNCEVT---NL-NDYREN  134 (149)
T ss_dssp             -----------THH-------HHHHCTTCCEEECT--TSCCCSHHHHGGGG-GCTTCCEEECTTCGGG---GS-TTHHHH
T ss_pred             -----------HHH-------HhhhCCCCCEEECC--CCcCCChHHHHHHh-hCCCCCEEeCcCCccc---ch-HHHHHH
Confidence                       222       34457789999999  9999863 346677 8999999999999998   44 32   3


Q ss_pred             hhcCCCCCceEEecC
Q 038163          172 GLCSLVHLQELYIAS  186 (207)
Q Consensus       172 ~~~~~~~L~~L~l~~  186 (207)
                      .+..+++|+.|++++
T Consensus       135 ~~~~l~~L~~L~l~d  149 (149)
T 2je0_A          135 VFKLLPQLTYLDGYD  149 (149)
T ss_dssp             HHHHCTTCCEETTBC
T ss_pred             HHHHCCCcccccCCC
Confidence            688899999998763

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.59  E-value=1.3e-16  Score=132.04  Aligned_cols=160  Identities=21%  Similarity=0.188  Sum_probs=87.7

Q ss_pred             hhhhcCCCCCCEEEcCCCcCCcccccch--hcccCCCCccEEEcCCCCCChH----HHHhhcccccc-----cCCcccce
Q 038163           38 LQSIGSFSSLNSLYLSSNNFTETVTITT--QELHNFTNMEYLKLDDSPLHIS----LLQSIASIFPL-----LKNLSMIG  106 (207)
Q Consensus        38 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~--~~l~~l~~L~~L~l~~~~~~~~----~~~~l~~l~~L-----~~n~~~~~  106 (207)
                      +..+..+++|++|++++|.+++.....+  .....+++|++|++++|.++..    .+..+..+++|     ++|.+...
T Consensus       220 ~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~  299 (461)
T 1z7x_W          220 CGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDE  299 (461)
T ss_dssp             HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHH
T ss_pred             HHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchH
Confidence            3444445555555555555443211000  1112355666666666665543    23333323333     44544332


Q ss_pred             eccccccccCCC-CCCCccceecccccccccCch----hHHHHHhcCCCccEEEccCCccCcccccchhhhhc----C-C
Q 038163          107 CEVNGVIRGQDF-PHSKSLEHLDMEFMRIALNTS----FLQIISESMSSLKYLSLSYYTLGINSSETLNQGLC----S-L  176 (207)
Q Consensus       107 ~~~~~~~~~~~~-~~~~~L~~L~l~~~~n~~~~~----~~~~l~~~~~~L~~L~l~~n~~~~~~~i~~~~~~~----~-~  176 (207)
                      .+..  +. +.+ ...++|+.|+++  +|.+++.    ++..+. .+++|+.|++++|.++  +.. +. .+.    . .
T Consensus       300 ~~~~--l~-~~l~~~~~~L~~L~L~--~n~l~~~~~~~l~~~l~-~~~~L~~L~Ls~n~i~--~~~-~~-~l~~~l~~~~  369 (461)
T 1z7x_W          300 GARL--LC-ETLLEPGCQLESLWVK--SCSFTAACCSHFSSVLA-QNRFLLELQISNNRLE--DAG-VR-ELCQGLGQPG  369 (461)
T ss_dssp             HHHH--HH-HHHTSTTCCCCEEECT--TSCCBGGGHHHHHHHHH-HCSSCCEEECCSSBCH--HHH-HH-HHHHHHTSTT
T ss_pred             HHHH--HH-HHhccCCccceeeEcC--CCCCchHHHHHHHHHHh-hCCCccEEEccCCccc--ccc-HH-HHHHHHcCCC
Confidence            1110  00 011 123578888888  8877754    345566 6788888888888887  332 22 232    2 6


Q ss_pred             CCCceEEecCCcCCC----CccccccCCCCCccCC
Q 038163          177 VHLQELYIASNDLRG----SLPWCMANMTSLRILD  207 (207)
Q Consensus       177 ~~L~~L~l~~n~l~~----~~p~~~~~l~~L~~l~  207 (207)
                      ++|+.|++++|.+.+    .+|..+..+++|++||
T Consensus       370 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~  404 (461)
T 1z7x_W          370 SVLRVLWLADCDVSDSSCSSLAATLLANHSLRELD  404 (461)
T ss_dssp             CCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEE
T ss_pred             CceEEEECCCCCCChhhHHHHHHHHHhCCCccEEE
Confidence            789999999998875    5677777788887764

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.59  E-value=1.4e-15  Score=129.23  Aligned_cols=44  Identities=14%  Similarity=0.036  Sum_probs=37.5

Q ss_pred             ceecccccccccCchhHHHHHhcCCCccEEEccCCccCcccccchhhhhcCC
Q 038163          125 EHLDMEFMRIALNTSFLQIISESMSSLKYLSLSYYTLGINSSETLNQGLCSL  176 (207)
Q Consensus       125 ~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L~l~~n~~~~~~~i~~~~~~~~~  176 (207)
                      +.|+++  +|.++ .+|..+. .+++|+.|++++|.++  +.+ |. .+..+
T Consensus       210 ~~L~Ls--~N~l~-~lp~~l~-~l~~L~~L~L~~N~l~--~~~-p~-~l~~l  253 (571)
T 3cvr_A          210 IFFRCR--ENRIT-HIPENIL-SLDPTCTIILEDNPLS--SRI-RE-SLSQQ  253 (571)
T ss_dssp             EEEECC--SSCCC-CCCGGGG-GSCTTEEEECCSSSCC--HHH-HH-HHHHH
T ss_pred             eEEecC--CCcce-ecCHHHh-cCCCCCEEEeeCCcCC--CcC-HH-HHHHh
Confidence            999999  99998 5777788 7999999999999998  666 66 66554

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.59  E-value=2e-16  Score=138.31  Aligned_cols=149  Identities=23%  Similarity=0.298  Sum_probs=98.5

Q ss_pred             ecCccccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcCCCCCChHHH
Q 038163           10 VVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDDSPLHISLL   89 (207)
Q Consensus        10 ~p~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~   89 (207)
                      +|+..+..++.|++|+|++|.+   ..+|..+..+++|++|+|++|.++ .+|   ..+..+++|++|+|++|.++ .++
T Consensus       215 ~~~~~~~~l~~L~~L~Ls~n~l---~~l~~~~~~l~~L~~L~Ls~N~l~-~lp---~~~~~l~~L~~L~Ls~N~l~-~lp  286 (727)
T 4b8c_D          215 MPKDSKYDDQLWHALDLSNLQI---FNISANIFKYDFLTRLYLNGNSLT-ELP---AEIKNLSNLRVLDLSHNRLT-SLP  286 (727)
T ss_dssp             -------CCCCCCEEECTTSCC---SCCCGGGGGCCSCSCCBCTTSCCS-CCC---GGGGGGTTCCEEECTTSCCS-SCC
T ss_pred             cChhhhccCCCCcEEECCCCCC---CCCChhhcCCCCCCEEEeeCCcCc-ccC---hhhhCCCCCCEEeCcCCcCC-ccC
Confidence            4567788899999999999999   467877788999999999999998 567   67888999999999999988 556


Q ss_pred             Hhhcccccc-----cCCcccceeccccccccCCCCCCCccceecccccccccCchhHHHHHhcCC-CccEEEccCCccCc
Q 038163           90 QSIASIFPL-----LKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFLQIISESMS-SLKYLSLSYYTLGI  163 (207)
Q Consensus        90 ~~l~~l~~L-----~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~-~L~~L~l~~n~~~~  163 (207)
                      ..++.+.+|     ++|.+. .+|.       .+..+++|+.|+++  +|.+++..|..+. ... ....+++++|.+. 
T Consensus       287 ~~~~~l~~L~~L~L~~N~l~-~lp~-------~~~~l~~L~~L~L~--~N~l~~~~p~~~~-~~~~~~~~l~l~~N~l~-  354 (727)
T 4b8c_D          287 AELGSCFQLKYFYFFDNMVT-TLPW-------EFGNLCNLQFLGVE--GNPLEKQFLKILT-EKSVTGLIFYLRDNRPE-  354 (727)
T ss_dssp             SSGGGGTTCSEEECCSSCCC-CCCS-------STTSCTTCCCEECT--TSCCCSHHHHHHH-HHHHHHHHHHHHHCCCC-
T ss_pred             hhhcCCCCCCEEECCCCCCC-ccCh-------hhhcCCCccEEeCC--CCccCCCChHHHh-hcchhhhHHhhccCccc-
Confidence            666655555     666665 4566       67777788888888  7777776666654 221 2233567777776 


Q ss_pred             ccccchhhhhcCCCCCceEEecCC
Q 038163          164 NSSETLNQGLCSLVHLQELYIASN  187 (207)
Q Consensus       164 ~~~i~~~~~~~~~~~L~~L~l~~n  187 (207)
                       +.+ |.       .++.|+++.|
T Consensus       355 -~~~-p~-------~l~~l~l~~n  369 (727)
T 4b8c_D          355 -IPL-PH-------ERRFIEINTD  369 (727)
T ss_dssp             -CCC-CC-------C---------
T ss_pred             -CcC-cc-------ccceeEeecc
Confidence             555 43       2344555555

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.57  E-value=1.4e-14  Score=106.82  Aligned_cols=133  Identities=17%  Similarity=0.191  Sum_probs=110.0

Q ss_pred             CcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchh-cccCCCCccEEEcCCCCCChHHHHhhccccccc
Q 038163           21 LKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQ-ELHNFTNMEYLKLDDSPLHISLLQSIASIFPLL   99 (207)
Q Consensus        21 L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~   99 (207)
                      -++++++++.+   ..+|..+.  ..+++|++++|.++...+   . .+..+++|++|++++|.+++             
T Consensus        10 ~~~l~~s~~~l---~~ip~~~~--~~l~~L~l~~n~i~~~~~---~~~~~~l~~L~~L~Ls~N~l~~-------------   68 (192)
T 1w8a_A           10 GTTVDCTGRGL---KEIPRDIP--LHTTELLLNDNELGRISS---DGLFGRLPHLVKLELKRNQLTG-------------   68 (192)
T ss_dssp             TTEEECTTSCC---SSCCSCCC--TTCSEEECCSCCCCSBCC---SCSGGGCTTCCEEECCSSCCCC-------------
T ss_pred             CCEEEcCCCCc---CcCccCCC--CCCCEEECCCCcCCccCC---ccccccCCCCCEEECCCCCCCC-------------
Confidence            37899999999   66777554  389999999999987765   3 37889999999999999872             


Q ss_pred             CCcccceeccccccccCCCCCCCccceecccccccccCchhHHHHHhcCCCccEEEccCCccCcccccchhhhhcCCCCC
Q 038163          100 KNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSLSYYTLGINSSETLNQGLCSLVHL  179 (207)
Q Consensus       100 ~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L~l~~n~~~~~~~i~~~~~~~~~~~L  179 (207)
                            ..|.       .+..+++|++|+++  +|.+++..+..+. .+++|+.|++++|.++  +.. |. .+..+++|
T Consensus        69 ------~~~~-------~~~~l~~L~~L~Ls--~N~l~~~~~~~~~-~l~~L~~L~L~~N~l~--~~~-~~-~~~~l~~L  128 (192)
T 1w8a_A           69 ------IEPN-------AFEGASHIQELQLG--ENKIKEISNKMFL-GLHQLKTLNLYDNQIS--CVM-PG-SFEHLNSL  128 (192)
T ss_dssp             ------BCTT-------TTTTCTTCCEEECC--SCCCCEECSSSST-TCTTCCEEECCSSCCC--EEC-TT-SSTTCTTC
T ss_pred             ------cCHh-------HcCCcccCCEEECC--CCcCCccCHHHhc-CCCCCCEEECCCCcCC--eeC-HH-HhhcCCCC
Confidence                  2344       78889999999999  9999877676677 8899999999999998  555 65 88899999


Q ss_pred             ceEEecCCcCCCCcc
Q 038163          180 QELYIASNDLRGSLP  194 (207)
Q Consensus       180 ~~L~l~~n~l~~~~p  194 (207)
                      +.|++++|.+.++.+
T Consensus       129 ~~L~L~~N~l~c~c~  143 (192)
T 1w8a_A          129 TSLNLASNPFNCNCH  143 (192)
T ss_dssp             CEEECTTCCBCCSGG
T ss_pred             CEEEeCCCCccCcCc
Confidence            999999999886544

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.56  E-value=2.9e-14  Score=103.50  Aligned_cols=132  Identities=20%  Similarity=0.199  Sum_probs=72.4

Q ss_pred             CcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcCCCCCChHHHHhhcccccccC
Q 038163           21 LKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDDSPLHISLLQSIASIFPLLK  100 (207)
Q Consensus        21 L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~  100 (207)
                      .+.++++++.+   ..+|..+  .++|+.|++++|.+++..+   ..+..+++|++|++++|.++               
T Consensus         9 ~~~l~~~~~~l---~~~p~~~--~~~l~~L~l~~n~l~~~~~---~~~~~l~~L~~L~l~~n~l~---------------   65 (177)
T 2o6r_A            9 GTEIRCNSKGL---TSVPTGI--PSSATRLELESNKLQSLPH---GVFDKLTQLTKLSLSQNQIQ---------------   65 (177)
T ss_dssp             TTEEECCSSCC---SSCCTTC--CTTCSEEECCSSCCCCCCT---TTTTTCTTCSEEECCSSCCC---------------
T ss_pred             CCEEEecCCCC---ccCCCCC--CCCCcEEEeCCCcccEeCH---HHhcCcccccEEECCCCcce---------------
Confidence            34566666666   3344332  2566666666666665444   34556666666666666654               


Q ss_pred             CcccceeccccccccCCCCCCCccceecccccccccCchhHHHHHhcCCCccEEEccCCccCcccccchhhhhcCCCCCc
Q 038163          101 NLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSLSYYTLGINSSETLNQGLCSLVHLQ  180 (207)
Q Consensus       101 n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L~l~~n~~~~~~~i~~~~~~~~~~~L~  180 (207)
                           .++..      .+..+++|+.|+++  +|.+++..+..+. .+++|+.|++++|.++   .+ +...+..+++|+
T Consensus        66 -----~~~~~------~~~~l~~L~~L~l~--~N~l~~~~~~~~~-~l~~L~~L~l~~N~l~---~~-~~~~~~~l~~L~  127 (177)
T 2o6r_A           66 -----SLPDG------VFDKLTKLTILYLH--ENKLQSLPNGVFD-KLTQLKELALDTNQLK---SV-PDGIFDRLTSLQ  127 (177)
T ss_dssp             -----CCCTT------TTTTCTTCCEEECC--SSCCCCCCTTTTT-TCTTCCEEECCSSCCS---CC-CTTTTTTCTTCC
T ss_pred             -----EeChh------HccCCCccCEEECC--CCCccccCHHHhh-CCcccCEEECcCCcce---Ee-CHHHhcCCcccC
Confidence                 11210      34555666666666  6666543333444 5566666666666665   44 332445566666


Q ss_pred             eEEecCCcCCCCc
Q 038163          181 ELYIASNDLRGSL  193 (207)
Q Consensus       181 ~L~l~~n~l~~~~  193 (207)
                      .|++++|.+.+..
T Consensus       128 ~L~l~~N~~~~~~  140 (177)
T 2o6r_A          128 KIWLHTNPWDCSC  140 (177)
T ss_dssp             EEECCSSCBCCCH
T ss_pred             EEEecCCCeeccC
Confidence            6666666665443

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.55  E-value=1.1e-14  Score=105.78  Aligned_cols=134  Identities=13%  Similarity=0.182  Sum_probs=105.1

Q ss_pred             ccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcCCCCCChHHHHhhcc
Q 038163           15 YNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDDSPLHISLLQSIAS   94 (207)
Q Consensus        15 ~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~   94 (207)
                      +..+.++++|++++|.+   ..++......++|++|++++|.+++. +    .+..+++|++|++++|.+.         
T Consensus        15 ~~~~~~L~~L~l~~n~l---~~i~~~~~~~~~L~~L~Ls~N~l~~~-~----~l~~l~~L~~L~Ls~N~l~---------   77 (176)
T 1a9n_A           15 YTNAVRDRELDLRGYKI---PVIENLGATLDQFDAIDFSDNEIRKL-D----GFPLLRRLKTLLVNNNRIC---------   77 (176)
T ss_dssp             EECTTSCEEEECTTSCC---CSCCCGGGGTTCCSEEECCSSCCCEE-C----CCCCCSSCCEEECCSSCCC---------
T ss_pred             cCCcCCceEEEeeCCCC---chhHHhhhcCCCCCEEECCCCCCCcc-c----ccccCCCCCEEECCCCccc---------
Confidence            57788999999999999   34554333345999999999999875 4    7888999999999999987         


Q ss_pred             cccccCCcccceeccccccccCCCCCCCccceecccccccccCchhHH--HHHhcCCCccEEEccCCccCcccccchhh-
Q 038163           95 IFPLLKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFLQ--IISESMSSLKYLSLSYYTLGINSSETLNQ-  171 (207)
Q Consensus        95 l~~L~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~~~~--~l~~~~~~L~~L~l~~n~~~~~~~i~~~~-  171 (207)
                                 .++..      .+..+++|++|+++  +|.++ .++.  .+. .+++|+.|++++|.+.   .+ +.. 
T Consensus        78 -----------~~~~~------~~~~l~~L~~L~L~--~N~i~-~~~~~~~l~-~l~~L~~L~l~~N~i~---~~-~~~~  132 (176)
T 1a9n_A           78 -----------RIGEG------LDQALPDLTELILT--NNSLV-ELGDLDPLA-SLKSLTYLCILRNPVT---NK-KHYR  132 (176)
T ss_dssp             -----------EECSC------HHHHCTTCCEEECC--SCCCC-CGGGGGGGG-GCTTCCEEECCSSGGG---GS-TTHH
T ss_pred             -----------ccCcc------hhhcCCCCCEEECC--CCcCC-cchhhHhhh-cCCCCCEEEecCCCCC---Cc-HhHH
Confidence                       23330      23677889999999  99886 4444  667 8899999999999997   66 551 


Q ss_pred             --hhcCCCCCceEEecCCcCC
Q 038163          172 --GLCSLVHLQELYIASNDLR  190 (207)
Q Consensus       172 --~~~~~~~L~~L~l~~n~l~  190 (207)
                        .+..+++|+.|++++|...
T Consensus       133 ~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A          133 LYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             HHHHHHCTTCSEETTEECCHH
T ss_pred             HHHHHHCCccceeCCCcCCHH
Confidence              3778899999999988765

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.55  E-value=2.1e-14  Score=123.32  Aligned_cols=70  Identities=24%  Similarity=0.164  Sum_probs=48.9

Q ss_pred             CccceecccccccccCchhHHHHHhcCCCccEEEccCCccCcccccchhhhhcCCCCCceEEecCCcCCCCccccccCCC
Q 038163          122 KSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSLSYYTLGINSSETLNQGLCSLVHLQELYIASNDLRGSLPWCMANMT  201 (207)
Q Consensus       122 ~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L~l~~n~~~~~~~i~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~  201 (207)
                      ++|+.|+++  +|.+++ +|   . .+++|+.|++++|.++   .+ |.    .+++|+.|++++|++. .+|..+..++
T Consensus       221 ~~L~~L~Ls--~N~L~~-lp---~-~l~~L~~L~Ls~N~L~---~l-p~----~~~~L~~L~Ls~N~L~-~lp~~l~~l~  284 (622)
T 3g06_A          221 SGLKELIVS--GNRLTS-LP---V-LPSELKELMVSGNRLT---SL-PM----LPSGLLSLSVYRNQLT-RLPESLIHLS  284 (622)
T ss_dssp             TTCCEEECC--SSCCSC-CC---C-CCTTCCEEECCSSCCS---CC-CC----CCTTCCEEECCSSCCC-SCCGGGGGSC
T ss_pred             CCCCEEEcc--CCccCc-CC---C-CCCcCcEEECCCCCCC---cC-Cc----ccccCcEEeCCCCCCC-cCCHHHhhcc
Confidence            567777777  777764 33   3 5667777777777776   66 43    4567778888888777 5677777777


Q ss_pred             CCccCC
Q 038163          202 SLRILD  207 (207)
Q Consensus       202 ~L~~l~  207 (207)
                      +|+.|+
T Consensus       285 ~L~~L~  290 (622)
T 3g06_A          285 SETTVN  290 (622)
T ss_dssp             TTCEEE
T ss_pred             ccCEEE
Confidence            777653

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.54  E-value=3.1e-14  Score=118.20  Aligned_cols=110  Identities=19%  Similarity=0.200  Sum_probs=50.8

Q ss_pred             CCCccCceecCccccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcCC
Q 038163            2 SFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDD   81 (207)
Q Consensus         2 ~~n~~~~~~p~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~~   81 (207)
                      ++|.+.+ +| . +..+++|++|++++|.+   ..+|..   ..+|++|++++|.+++ +|    .+..+++|++|++++
T Consensus       139 ~~n~l~~-lp-~-~~~l~~L~~L~l~~N~l---~~lp~~---~~~L~~L~L~~n~l~~-l~----~~~~l~~L~~L~l~~  204 (454)
T 1jl5_A          139 SNNQLEK-LP-E-LQNSSFLKIIDVDNNSL---KKLPDL---PPSLEFIAAGNNQLEE-LP----ELQNLPFLTAIYADN  204 (454)
T ss_dssp             CSSCCSS-CC-C-CTTCTTCCEEECCSSCC---SCCCCC---CTTCCEEECCSSCCSS-CC----CCTTCTTCCEEECCS
T ss_pred             cCCCCCC-Cc-c-cCCCCCCCEEECCCCcC---cccCCC---cccccEEECcCCcCCc-Cc----cccCCCCCCEEECCC
Confidence            3444443 44 2 45555555555555555   123322   1345555555555444 23    345555566666655


Q ss_pred             CCCChHHHHhhcccccc--cCCcccceeccccccccCCCCCCCccceecccccccccC
Q 038163           82 SPLHISLLQSIASIFPL--LKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALN  137 (207)
Q Consensus        82 ~~~~~~~~~~l~~l~~L--~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~  137 (207)
                      |.+.+ .+.....++.|  ++|.+. .+|        .+..+++|++|+++  +|.++
T Consensus       205 N~l~~-l~~~~~~L~~L~l~~n~l~-~lp--------~~~~l~~L~~L~l~--~N~l~  250 (454)
T 1jl5_A          205 NSLKK-LPDLPLSLESIVAGNNILE-ELP--------ELQNLPFLTTIYAD--NNLLK  250 (454)
T ss_dssp             SCCSS-CCCCCTTCCEEECCSSCCS-SCC--------CCTTCTTCCEEECC--SSCCS
T ss_pred             CcCCc-CCCCcCcccEEECcCCcCC-ccc--------ccCCCCCCCEEECC--CCcCC
Confidence            55542 22222233333  444443 222        34455556666666  55554

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.54  E-value=4.3e-14  Score=104.29  Aligned_cols=122  Identities=20%  Similarity=0.197  Sum_probs=66.7

Q ss_pred             CCCccCceecCccccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcCC
Q 038163            2 SFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDD   81 (207)
Q Consensus         2 ~~n~~~~~~p~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~~   81 (207)
                      ++|.+. .+|..+   .+++++|++++|.+   ..+|..+..+++|++|++++|.++...+   ..+..+++|++|++++
T Consensus        18 ~~~~l~-~ip~~~---~~~l~~L~L~~n~i---~~ip~~~~~l~~L~~L~Ls~N~i~~i~~---~~f~~l~~L~~L~Ls~   87 (193)
T 2wfh_A           18 SNKGLK-VLPKGI---PRDVTELYLDGNQF---TLVPKELSNYKHLTLIDLSNNRISTLSN---QSFSNMTQLLTLILSY   87 (193)
T ss_dssp             TTSCCS-SCCSCC---CTTCCEEECCSSCC---CSCCGGGGGCTTCCEEECCSSCCCCCCT---TTTTTCTTCCEEECCS
T ss_pred             CCCCCC-cCCCCC---CCCCCEEECCCCcC---chhHHHhhcccCCCEEECCCCcCCEeCH---hHccCCCCCCEEECCC
Confidence            344444 455432   24566666666666   3455566666666666666666665555   4556666666666666


Q ss_pred             CCCChHHHHhhcccccccCCcccceeccccccccCCCCCCCccceecccccccccCchhHHHHHhcCCCccEEEccCCcc
Q 038163           82 SPLHISLLQSIASIFPLLKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSLSYYTL  161 (207)
Q Consensus        82 ~~~~~~~~~~l~~l~~L~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L~l~~n~~  161 (207)
                      |.++..                   .+.       .+..+++|++|+++  +|.++...+..+. .+++|+.|++++|.+
T Consensus        88 N~l~~i-------------------~~~-------~f~~l~~L~~L~L~--~N~l~~~~~~~~~-~l~~L~~L~L~~N~~  138 (193)
T 2wfh_A           88 NRLRCI-------------------PPR-------TFDGLKSLRLLSLH--GNDISVVPEGAFN-DLSALSHLAIGANPL  138 (193)
T ss_dssp             SCCCBC-------------------CTT-------TTTTCTTCCEEECC--SSCCCBCCTTTTT-TCTTCCEEECCSSCE
T ss_pred             CccCEe-------------------CHH-------HhCCCCCCCEEECC--CCCCCeeChhhhh-cCccccEEEeCCCCe
Confidence            665511                   122       45555556666666  5555533333344 455566666655555


Q ss_pred             C
Q 038163          162 G  162 (207)
Q Consensus       162 ~  162 (207)
                      .
T Consensus       139 ~  139 (193)
T 2wfh_A          139 Y  139 (193)
T ss_dssp             E
T ss_pred             e
Confidence            3

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.54  E-value=3.8e-14  Score=104.57  Aligned_cols=129  Identities=23%  Similarity=0.287  Sum_probs=108.9

Q ss_pred             CcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcCCCCCChHHHHhhcccccccC
Q 038163           21 LKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDDSPLHISLLQSIASIFPLLK  100 (207)
Q Consensus        21 L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~  100 (207)
                      -++++++++.+   ..+|..+.  ++|++|++++|.++. +|   ..+..+++|++|++++|.++.              
T Consensus        12 ~~~l~~~~~~l---~~ip~~~~--~~l~~L~L~~n~i~~-ip---~~~~~l~~L~~L~Ls~N~i~~--------------   68 (193)
T 2wfh_A           12 DTVVRCSNKGL---KVLPKGIP--RDVTELYLDGNQFTL-VP---KELSNYKHLTLIDLSNNRIST--------------   68 (193)
T ss_dssp             TTEEECTTSCC---SSCCSCCC--TTCCEEECCSSCCCS-CC---GGGGGCTTCCEEECCSSCCCC--------------
T ss_pred             CCEEEcCCCCC---CcCCCCCC--CCCCEEECCCCcCch-hH---HHhhcccCCCEEECCCCcCCE--------------
Confidence            36899999999   56776543  689999999999984 56   688899999999999999871              


Q ss_pred             CcccceeccccccccCCCCCCCccceecccccccccCchhHHHHHhcCCCccEEEccCCccCcccccchhhhhcCCCCCc
Q 038163          101 NLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSLSYYTLGINSSETLNQGLCSLVHLQ  180 (207)
Q Consensus       101 n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L~l~~n~~~~~~~i~~~~~~~~~~~L~  180 (207)
                           ..+.       .+..+++|+.|+++  +|.++...+..+. .+++|+.|++++|.++   .+ +...+..+++|+
T Consensus        69 -----i~~~-------~f~~l~~L~~L~Ls--~N~l~~i~~~~f~-~l~~L~~L~L~~N~l~---~~-~~~~~~~l~~L~  129 (193)
T 2wfh_A           69 -----LSNQ-------SFSNMTQLLTLILS--YNRLRCIPPRTFD-GLKSLRLLSLHGNDIS---VV-PEGAFNDLSALS  129 (193)
T ss_dssp             -----CCTT-------TTTTCTTCCEEECC--SSCCCBCCTTTTT-TCTTCCEEECCSSCCC---BC-CTTTTTTCTTCC
T ss_pred             -----eCHh-------HccCCCCCCEEECC--CCccCEeCHHHhC-CCCCCCEEECCCCCCC---ee-ChhhhhcCcccc
Confidence                 1223       68889999999999  9999977777787 8999999999999998   66 554788999999


Q ss_pred             eEEecCCcCCC
Q 038163          181 ELYIASNDLRG  191 (207)
Q Consensus       181 ~L~l~~n~l~~  191 (207)
                      .|++++|.+..
T Consensus       130 ~L~L~~N~~~C  140 (193)
T 2wfh_A          130 HLAIGANPLYC  140 (193)
T ss_dssp             EEECCSSCEEC
T ss_pred             EEEeCCCCeec
Confidence            99999998864

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.53  E-value=9.3e-14  Score=115.29  Aligned_cols=96  Identities=20%  Similarity=0.176  Sum_probs=51.1

Q ss_pred             CCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcCCCCCChHHHHhhcccccc
Q 038163           19 RKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDDSPLHISLLQSIASIFPL   98 (207)
Q Consensus        19 ~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L   98 (207)
                      ++|++|++++|.+   ..++..   .++|++|++++|.+++ +|    .+..+++|++|++++|.+.+ .+..+..++.|
T Consensus       111 ~~L~~L~l~~n~l---~~l~~~---~~~L~~L~L~~n~l~~-lp----~~~~l~~L~~L~l~~N~l~~-lp~~~~~L~~L  178 (454)
T 1jl5_A          111 QSLKSLLVDNNNL---KALSDL---PPLLEYLGVSNNQLEK-LP----ELQNSSFLKIIDVDNNSLKK-LPDLPPSLEFI  178 (454)
T ss_dssp             TTCCEEECCSSCC---SCCCSC---CTTCCEEECCSSCCSS-CC----CCTTCTTCCEEECCSSCCSC-CCCCCTTCCEE
T ss_pred             CCCcEEECCCCcc---CcccCC---CCCCCEEECcCCCCCC-Cc----ccCCCCCCCEEECCCCcCcc-cCCCcccccEE
Confidence            4455555555555   112211   1466666666666665 44    46666777777777776653 33334445544


Q ss_pred             --cCCcccceeccccccccCCCCCCCccceecccccccccC
Q 038163           99 --LKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALN  137 (207)
Q Consensus        99 --~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~  137 (207)
                        ++|.+.+ +|        .+..+++|++|+++  +|.++
T Consensus       179 ~L~~n~l~~-l~--------~~~~l~~L~~L~l~--~N~l~  208 (454)
T 1jl5_A          179 AAGNNQLEE-LP--------ELQNLPFLTAIYAD--NNSLK  208 (454)
T ss_dssp             ECCSSCCSS-CC--------CCTTCTTCCEEECC--SSCCS
T ss_pred             ECcCCcCCc-Cc--------cccCCCCCCEEECC--CCcCC
Confidence              5555554 23        34455555555555  55544

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.51  E-value=6.9e-17  Score=119.69  Aligned_cols=112  Identities=21%  Similarity=0.284  Sum_probs=55.9

Q ss_pred             hhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcCCCCCChHHHHhhcccccccCCcccceeccccccccCCCC
Q 038163           40 SIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDDSPLHISLLQSIASIFPLLKNLSMIGCEVNGVIRGQDFP  119 (207)
Q Consensus        40 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~n~~~~~~~~~~~~~~~~~~  119 (207)
                      .+..+++|++|++++|.+++ +|    .+..+++|++|++++|.+. .                   +|.       .+.
T Consensus        43 ~~~~l~~L~~L~ls~n~l~~-l~----~~~~l~~L~~L~l~~n~l~-~-------------------l~~-------~~~   90 (198)
T 1ds9_A           43 TLSTLKACKHLALSTNNIEK-IS----SLSGMENLRILSLGRNLIK-K-------------------IEN-------LDA   90 (198)
T ss_dssp             HHHHTTTCSEEECSEEEESC-CC----CHHHHTTCCEEEEEEEEEC-S-------------------CSS-------HHH
T ss_pred             HHhcCCCCCEEECCCCCCcc-cc----ccccCCCCCEEECCCCCcc-c-------------------ccc-------hhh
Confidence            56666666666666666655 33    4455566666666666554 1                   121       222


Q ss_pred             CCCccceecccccccccCchhHHHHHhcCCCccEEEccCCccCcccccchh-hhhcCCCCCceEEecCCcCCCC
Q 038163          120 HSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSLSYYTLGINSSETLN-QGLCSLVHLQELYIASNDLRGS  192 (207)
Q Consensus       120 ~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L~l~~n~~~~~~~i~~~-~~~~~~~~L~~L~l~~n~l~~~  192 (207)
                      .+++|+.|+++  +|.+++ ++ .+. .+++|+.|++++|.+.   .+ +. ..+..+++|+.|++++|.+.+.
T Consensus        91 ~~~~L~~L~L~--~N~l~~-l~-~~~-~l~~L~~L~l~~N~i~---~~-~~~~~l~~l~~L~~L~l~~N~l~~~  155 (198)
T 1ds9_A           91 VADTLEELWIS--YNQIAS-LS-GIE-KLVNLRVLYMSNNKIT---NW-GEIDKLAALDKLEDLLLAGNPLYND  155 (198)
T ss_dssp             HHHHCSEEEEE--EEECCC-HH-HHH-HHHHSSEEEESEEECC---CH-HHHHHHTTTTTCSEEEECSCHHHHH
T ss_pred             cCCcCCEEECc--CCcCCc-CC-ccc-cCCCCCEEECCCCcCC---ch-hHHHHHhcCCCCCEEEecCCccccc
Confidence            23445555555  555543 22 333 4455555555555554   32 21 1344555555555555555433

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.49  E-value=8.5e-14  Score=101.03  Aligned_cols=127  Identities=17%  Similarity=0.161  Sum_probs=103.4

Q ss_pred             hhcCCCCCCEEEcCCCcCCcccccchhcccCCC-CccEEEcCCCCCChHHHHhhcccccccCCcccceeccccccccCCC
Q 038163           40 SIGSFSSLNSLYLSSNNFTETVTITTQELHNFT-NMEYLKLDDSPLHISLLQSIASIFPLLKNLSMIGCEVNGVIRGQDF  118 (207)
Q Consensus        40 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~~~~~~~~l~~l~~L~~n~~~~~~~~~~~~~~~~~  118 (207)
                      .+..+.+|+.|++++|.++.. +    .+..+. +|++|++++|.+.                    .+ .       .+
T Consensus        14 ~~~~~~~L~~L~l~~n~l~~i-~----~~~~~~~~L~~L~Ls~N~l~--------------------~~-~-------~l   60 (176)
T 1a9n_A           14 QYTNAVRDRELDLRGYKIPVI-E----NLGATLDQFDAIDFSDNEIR--------------------KL-D-------GF   60 (176)
T ss_dssp             EEECTTSCEEEECTTSCCCSC-C----CGGGGTTCCSEEECCSSCCC--------------------EE-C-------CC
T ss_pred             hcCCcCCceEEEeeCCCCchh-H----HhhhcCCCCCEEECCCCCCC--------------------cc-c-------cc
Confidence            356788999999999999864 5    345444 9999999999987                    22 3       77


Q ss_pred             CCCCccceecccccccccCchhHHHHHhcCCCccEEEccCCccCcccccchh-hhhcCCCCCceEEecCCcCCCCccc--
Q 038163          119 PHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSLSYYTLGINSSETLN-QGLCSLVHLQELYIASNDLRGSLPW--  195 (207)
Q Consensus       119 ~~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L~l~~n~~~~~~~i~~~-~~~~~~~~L~~L~l~~n~l~~~~p~--  195 (207)
                      ..+++|++|+++  +|.++...+..+. .+++|+.|++++|.++   .+ +. ..+..+++|+.|++++|.+.. +|.  
T Consensus        61 ~~l~~L~~L~Ls--~N~l~~~~~~~~~-~l~~L~~L~L~~N~i~---~~-~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~  132 (176)
T 1a9n_A           61 PLLRRLKTLLVN--NNRICRIGEGLDQ-ALPDLTELILTNNSLV---EL-GDLDPLASLKSLTYLCILRNPVTN-KKHYR  132 (176)
T ss_dssp             CCCSSCCEEECC--SSCCCEECSCHHH-HCTTCCEEECCSCCCC---CG-GGGGGGGGCTTCCEEECCSSGGGG-STTHH
T ss_pred             ccCCCCCEEECC--CCcccccCcchhh-cCCCCCEEECCCCcCC---cc-hhhHhhhcCCCCCEEEecCCCCCC-cHhHH
Confidence            888999999999  9999855445557 8999999999999998   66 53 267889999999999999984 465  


Q ss_pred             --cccCCCCCccCC
Q 038163          196 --CMANMTSLRILD  207 (207)
Q Consensus       196 --~~~~l~~L~~l~  207 (207)
                        .+..+++|+.||
T Consensus       133 ~~~~~~l~~L~~Ld  146 (176)
T 1a9n_A          133 LYVIYKVPQVRVLD  146 (176)
T ss_dssp             HHHHHHCTTCSEET
T ss_pred             HHHHHHCCccceeC
Confidence              488899998875

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.48  E-value=1.6e-14  Score=126.21  Aligned_cols=120  Identities=19%  Similarity=0.166  Sum_probs=62.6

Q ss_pred             chhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcCCCCCChHHHHhhcccccccCCcccceeccccccccC
Q 038163           37 LLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDDSPLHISLLQSIASIFPLLKNLSMIGCEVNGVIRGQ  116 (207)
Q Consensus        37 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~n~~~~~~~~~~~~~~~  116 (207)
                      .+..+..++.|+.|+|++|.+.. +|   ..+..+++|++|+|++|.++ .+                   |.       
T Consensus       216 ~~~~~~~l~~L~~L~Ls~n~l~~-l~---~~~~~l~~L~~L~Ls~N~l~-~l-------------------p~-------  264 (727)
T 4b8c_D          216 PKDSKYDDQLWHALDLSNLQIFN-IS---ANIFKYDFLTRLYLNGNSLT-EL-------------------PA-------  264 (727)
T ss_dssp             ------CCCCCCEEECTTSCCSC-CC---GGGGGCCSCSCCBCTTSCCS-CC-------------------CG-------
T ss_pred             ChhhhccCCCCcEEECCCCCCCC-CC---hhhcCCCCCCEEEeeCCcCc-cc-------------------Ch-------
Confidence            34556666777777777776663 34   34556667777777777665 33                   33       


Q ss_pred             CCCCCCccceecccccccccCchhHHHHHhcCCCccEEEccCCccCcccccchhhhhcCCCCCceEEecCCcCCCCcccc
Q 038163          117 DFPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSLSYYTLGINSSETLNQGLCSLVHLQELYIASNDLRGSLPWC  196 (207)
Q Consensus       117 ~~~~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L~l~~n~~~~~~~i~~~~~~~~~~~L~~L~l~~n~l~~~~p~~  196 (207)
                      .+..+++|++|+|+  +|.++ .+|..+. .+++|+.|++++|.++   .+ |. .+..+++|+.|+|++|.+.+.+|..
T Consensus       265 ~~~~l~~L~~L~Ls--~N~l~-~lp~~~~-~l~~L~~L~L~~N~l~---~l-p~-~~~~l~~L~~L~L~~N~l~~~~p~~  335 (727)
T 4b8c_D          265 EIKNLSNLRVLDLS--HNRLT-SLPAELG-SCFQLKYFYFFDNMVT---TL-PW-EFGNLCNLQFLGVEGNPLEKQFLKI  335 (727)
T ss_dssp             GGGGGTTCCEEECT--TSCCS-SCCSSGG-GGTTCSEEECCSSCCC---CC-CS-STTSCTTCCCEECTTSCCCSHHHHH
T ss_pred             hhhCCCCCCEEeCc--CCcCC-ccChhhc-CCCCCCEEECCCCCCC---cc-Ch-hhhcCCCccEEeCCCCccCCCChHH
Confidence            44445555555555  55554 3444444 4555555555555554   44 44 4555555555555555555444433

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.48  E-value=3.3e-13  Score=97.91  Aligned_cols=126  Identities=17%  Similarity=0.156  Sum_probs=98.2

Q ss_pred             CCCccCceecCccccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcCC
Q 038163            2 SFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDD   81 (207)
Q Consensus         2 ~~n~~~~~~p~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~~   81 (207)
                      ++|.+. .+|...   .+++++|++++|.+  ....+..+..+++|++|++++|.++...+   ..+..+++|++|++++
T Consensus        15 ~~~~l~-~~p~~~---~~~l~~L~l~~n~l--~~~~~~~~~~l~~L~~L~l~~n~l~~~~~---~~~~~l~~L~~L~l~~   85 (177)
T 2o6r_A           15 NSKGLT-SVPTGI---PSSATRLELESNKL--QSLPHGVFDKLTQLTKLSLSQNQIQSLPD---GVFDKLTKLTILYLHE   85 (177)
T ss_dssp             CSSCCS-SCCTTC---CTTCSEEECCSSCC--CCCCTTTTTTCTTCSEEECCSSCCCCCCT---TTTTTCTTCCEEECCS
T ss_pred             cCCCCc-cCCCCC---CCCCcEEEeCCCcc--cEeCHHHhcCcccccEEECCCCcceEeCh---hHccCCCccCEEECCC
Confidence            456666 467543   47899999999999  44445567899999999999999997766   5678999999999999


Q ss_pred             CCCChHHHHhhcccccccCCcccceeccccccccCCCCCCCccceecccccccccCchhHHHHHhcCCCccEEEccCCcc
Q 038163           82 SPLHISLLQSIASIFPLLKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSLSYYTL  161 (207)
Q Consensus        82 ~~~~~~~~~~l~~l~~L~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L~l~~n~~  161 (207)
                      |.++                    .++..      .+..+++|++|+++  +|.++...+..+. .+++|+.|++++|.+
T Consensus        86 N~l~--------------------~~~~~------~~~~l~~L~~L~l~--~N~l~~~~~~~~~-~l~~L~~L~l~~N~~  136 (177)
T 2o6r_A           86 NKLQ--------------------SLPNG------VFDKLTQLKELALD--TNQLKSVPDGIFD-RLTSLQKIWLHTNPW  136 (177)
T ss_dssp             SCCC--------------------CCCTT------TTTTCTTCCEEECC--SSCCSCCCTTTTT-TCTTCCEEECCSSCB
T ss_pred             CCcc--------------------ccCHH------HhhCCcccCEEECc--CCcceEeCHHHhc-CCcccCEEEecCCCe
Confidence            9987                    12221      56778889999999  9988854444455 788999999999988


Q ss_pred             Cccccc
Q 038163          162 GINSSE  167 (207)
Q Consensus       162 ~~~~~i  167 (207)
                      .  +..
T Consensus       137 ~--~~~  140 (177)
T 2o6r_A          137 D--CSC  140 (177)
T ss_dssp             C--CCH
T ss_pred             e--ccC
Confidence            7  544

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.48  E-value=2.4e-14  Score=114.93  Aligned_cols=180  Identities=16%  Similarity=0.114  Sum_probs=125.7

Q ss_pred             CCccCceecCccccCCCCCcEEecCCCcccCCCcchh-hhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccE-EEcC
Q 038163            3 FNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQ-SIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEY-LKLD   80 (207)
Q Consensus         3 ~n~~~~~~p~~~~~~l~~L~~L~ls~n~i~~~~~~~~-~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~-L~l~   80 (207)
                      +++++ .||..+   .+++++|++++|.|   ..+|. .|.++++|++|++++|.+.+.+|.  ..+..++++++ +.+.
T Consensus        18 ~~~Lt-~iP~~l---~~~l~~L~Ls~N~i---~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~--~~f~~L~~l~~~l~~~   88 (350)
T 4ay9_X           18 ESKVT-EIPSDL---PRNAIELRFVLTKL---RVIQKGAFSGFGDLEKIEISQNDVLEVIEA--DVFSNLPKLHEIRIEK   88 (350)
T ss_dssp             STTCC-SCCTTC---CTTCSEEEEESCCC---SEECTTSSTTCTTCCEEEEECCTTCCEECT--TSBCSCTTCCEEEEEE
T ss_pred             CCCCC-ccCcCc---CCCCCEEEccCCcC---CCcCHHHHcCCCCCCEEECcCCCCCCccCh--hHhhcchhhhhhhccc
Confidence            45666 677654   36789999999999   45664 688999999999999998766652  45677888765 5666


Q ss_pred             CCCCChHHHHhhcccccc-----cCCcccceeccccccccCCCCCCCccceeccccccc-ccCchhHHHHHhcC-CCccE
Q 038163           81 DSPLHISLLQSIASIFPL-----LKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRI-ALNTSFLQIISESM-SSLKY  153 (207)
Q Consensus        81 ~~~~~~~~~~~l~~l~~L-----~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n-~~~~~~~~~l~~~~-~~L~~  153 (207)
                      +|.+....+..+..+++|     .+|.+....+.       .+.....+..+++.  .+ .+....+..+. .+ ..++.
T Consensus        89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~-------~~~~~~~l~~l~l~--~~~~i~~l~~~~f~-~~~~~l~~  158 (350)
T 4ay9_X           89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDV-------HKIHSLQKVLLDIQ--DNINIHTIERNSFV-GLSFESVI  158 (350)
T ss_dssp             ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCC-------TTCCBSSCEEEEEE--SCTTCCEECTTSST-TSBSSCEE
T ss_pred             CCcccccCchhhhhccccccccccccccccCCch-------hhcccchhhhhhhc--cccccccccccchh-hcchhhhh
Confidence            788775445555555555     66666654333       45556677778876  53 45433333344 34 36889


Q ss_pred             EEccCCccCcccccchhhhhcCCCCCceEEecC-CcCCCCcc-ccccCCCCCccCC
Q 038163          154 LSLSYYTLGINSSETLNQGLCSLVHLQELYIAS-NDLRGSLP-WCMANMTSLRILD  207 (207)
Q Consensus       154 L~l~~n~~~~~~~i~~~~~~~~~~~L~~L~l~~-n~l~~~~p-~~~~~l~~L~~l~  207 (207)
                      |++++|.++   .+ +. ......+++.+++.+ |.+. .+| ..|..+++|++||
T Consensus       159 L~L~~N~i~---~i-~~-~~f~~~~L~~l~l~~~n~l~-~i~~~~f~~l~~L~~Ld  208 (350)
T 4ay9_X          159 LWLNKNGIQ---EI-HN-SAFNGTQLDELNLSDNNNLE-ELPNDVFHGASGPVILD  208 (350)
T ss_dssp             EECCSSCCC---EE-CT-TSSTTEEEEEEECTTCTTCC-CCCTTTTTTEECCSEEE
T ss_pred             hcccccccc---CC-Ch-hhccccchhHHhhccCCccc-CCCHHHhccCcccchhh
Confidence            999999998   78 76 555567899999986 5555 555 6788899988765

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.47  E-value=6.6e-16  Score=131.44  Aligned_cols=170  Identities=18%  Similarity=0.112  Sum_probs=121.7

Q ss_pred             cCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCc-------------CCcccccchhc---------------
Q 038163           16 NGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNN-------------FTETVTITTQE---------------   67 (207)
Q Consensus        16 ~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~-------------~~~~~~~~~~~---------------   67 (207)
                      ...++|+.|++++|.+   ..+|..++.+++|+.|++.+|.             ..+..|..+..               
T Consensus       346 ~~~~~L~~L~Ls~n~L---~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~  422 (567)
T 1dce_A          346 ATDEQLFRCELSVEKS---TVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYL  422 (567)
T ss_dssp             STTTTSSSCCCCHHHH---HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHH
T ss_pred             ccCccceeccCChhhH---HhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhccc
Confidence            5677888888888888   5788888888888888886653             23222211000               


Q ss_pred             ------------cc--CCCCccEEEcCCCCCChHHHHhhcccccc-----cCCcccceeccccccccCCCCCCCccceec
Q 038163           68 ------------LH--NFTNMEYLKLDDSPLHISLLQSIASIFPL-----LKNLSMIGCEVNGVIRGQDFPHSKSLEHLD  128 (207)
Q Consensus        68 ------------l~--~l~~L~~L~l~~~~~~~~~~~~l~~l~~L-----~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~  128 (207)
                                  +.  ....|++|++++|.+++ ++. ++.+++|     ++|.++ .+|.       .+..+++|+.|+
T Consensus       423 ~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~-------~~~~l~~L~~L~  492 (567)
T 1dce_A          423 DDLRSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPP-------ALAALRCLEVLQ  492 (567)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCG-------GGGGCTTCCEEE
T ss_pred             chhhhhhhhcccccccCccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccch-------hhhcCCCCCEEE
Confidence                        00  01257788888888874 333 5555555     778777 5777       888899999999


Q ss_pred             ccccccccCchhHHHHHhcCCCccEEEccCCccCcccccc-hhhhhcCCCCCceEEecCCcCCCCccc---cccCCCCCc
Q 038163          129 MEFMRIALNTSFLQIISESMSSLKYLSLSYYTLGINSSET-LNQGLCSLVHLQELYIASNDLRGSLPW---CMANMTSLR  204 (207)
Q Consensus       129 l~~~~n~~~~~~~~~l~~~~~~L~~L~l~~n~~~~~~~i~-~~~~~~~~~~L~~L~l~~n~l~~~~p~---~~~~l~~L~  204 (207)
                      ++  +|.+++ +| .+. .+++|+.|++++|.++   .+. |. .+..+++|+.|++++|.+.+..|.   .+..+++|+
T Consensus       493 Ls--~N~l~~-lp-~l~-~l~~L~~L~Ls~N~l~---~~~~p~-~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~  563 (567)
T 1dce_A          493 AS--DNALEN-VD-GVA-NLPRLQELLLCNNRLQ---QSAAIQ-PLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVS  563 (567)
T ss_dssp             CC--SSCCCC-CG-GGT-TCSSCCEEECCSSCCC---SSSTTG-GGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCS
T ss_pred             CC--CCCCCC-Cc-ccC-CCCCCcEEECCCCCCC---CCCCcH-HHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccC
Confidence            99  999885 55 677 8899999999999998   441 34 788899999999999999875442   234578887


Q ss_pred             cCC
Q 038163          205 ILD  207 (207)
Q Consensus       205 ~l~  207 (207)
                      .||
T Consensus       564 ~L~  566 (567)
T 1dce_A          564 SIL  566 (567)
T ss_dssp             EEE
T ss_pred             ccC
Confidence            764

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.46  E-value=1.2e-13  Score=118.54  Aligned_cols=69  Identities=19%  Similarity=0.099  Sum_probs=57.9

Q ss_pred             CCCccceecccccccccCchhHHHHHhcCCCccEEEccCCccCcccccchhhhhcCCCCCceEEecCCcCCCCccccccC
Q 038163          120 HSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSLSYYTLGINSSETLNQGLCSLVHLQELYIASNDLRGSLPWCMAN  199 (207)
Q Consensus       120 ~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L~l~~n~~~~~~~i~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~  199 (207)
                      .+++|+.|+++  +|.++ .+|.    .+++|+.|++++|.++   .+ |. .+..+++|+.|++++|++.+..|..+..
T Consensus       239 ~l~~L~~L~Ls--~N~L~-~lp~----~~~~L~~L~Ls~N~L~---~l-p~-~l~~l~~L~~L~L~~N~l~~~~~~~l~~  306 (622)
T 3g06_A          239 LPSELKELMVS--GNRLT-SLPM----LPSGLLSLSVYRNQLT---RL-PE-SLIHLSSETTVNLEGNPLSERTLQALRE  306 (622)
T ss_dssp             CCTTCCEEECC--SSCCS-CCCC----CCTTCCEEECCSSCCC---SC-CG-GGGGSCTTCEEECCSCCCCHHHHHHHHH
T ss_pred             CCCcCcEEECC--CCCCC-cCCc----ccccCcEEeCCCCCCC---cC-CH-HHhhccccCEEEecCCCCCCcCHHHHHh
Confidence            45789999999  99998 3443    4678999999999998   88 87 8999999999999999998877765554


Q ss_pred             C
Q 038163          200 M  200 (207)
Q Consensus       200 l  200 (207)
                      +
T Consensus       307 L  307 (622)
T 3g06_A          307 I  307 (622)
T ss_dssp             H
T ss_pred             c
Confidence            3

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.43  E-value=9.5e-16  Score=113.50  Aligned_cols=147  Identities=18%  Similarity=0.145  Sum_probs=112.1

Q ss_pred             CCCCccCceecC-----ccccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCcc
Q 038163            1 MSFNEINNLVVP-----QGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNME   75 (207)
Q Consensus         1 l~~n~~~~~~p~-----~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~   75 (207)
                      ++.+.+.|.+|+     ..+..+++|++|++++|.+   ..+| .+..+++|++|++++|.++. +|   ..+..+++|+
T Consensus        25 l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l---~~l~-~~~~l~~L~~L~l~~n~l~~-l~---~~~~~~~~L~   96 (198)
T 1ds9_A           25 AEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNI---EKIS-SLSGMENLRILSLGRNLIKK-IE---NLDAVADTLE   96 (198)
T ss_dssp             CSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEE---SCCC-CHHHHTTCCEEEEEEEEECS-CS---SHHHHHHHCS
T ss_pred             hheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCC---cccc-ccccCCCCCEEECCCCCccc-cc---chhhcCCcCC
Confidence            345667777664     2578999999999999999   3367 88899999999999999985 56   4566678999


Q ss_pred             EEEcCCCCCChHHHHhhcccccccCCcccceeccccccccCCCCCCCccceecccccccccCchhH-HHHHhcCCCccEE
Q 038163           76 YLKLDDSPLHISLLQSIASIFPLLKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFL-QIISESMSSLKYL  154 (207)
Q Consensus        76 ~L~l~~~~~~~~~~~~l~~l~~L~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~~~-~~l~~~~~~L~~L  154 (207)
                      +|++++|.+.+ .+                           .+..+++|++|+++  +|.++.... ..+. .+++|+.|
T Consensus        97 ~L~L~~N~l~~-l~---------------------------~~~~l~~L~~L~l~--~N~i~~~~~~~~l~-~l~~L~~L  145 (198)
T 1ds9_A           97 ELWISYNQIAS-LS---------------------------GIEKLVNLRVLYMS--NNKITNWGEIDKLA-ALDKLEDL  145 (198)
T ss_dssp             EEEEEEEECCC-HH---------------------------HHHHHHHSSEEEES--EEECCCHHHHHHHT-TTTTCSEE
T ss_pred             EEECcCCcCCc-CC---------------------------ccccCCCCCEEECC--CCcCCchhHHHHHh-cCCCCCEE
Confidence            99999999873 11                           33455679999999  999885333 4677 88999999


Q ss_pred             EccCCccCcccccchh---------hhhcCCCCCceEEecCCcCCC
Q 038163          155 SLSYYTLGINSSETLN---------QGLCSLVHLQELYIASNDLRG  191 (207)
Q Consensus       155 ~l~~n~~~~~~~i~~~---------~~~~~~~~L~~L~l~~n~l~~  191 (207)
                      ++++|.+.  +.+ |.         ..+..+++|+.||  ++.+..
T Consensus       146 ~l~~N~l~--~~~-~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~  186 (198)
T 1ds9_A          146 LLAGNPLY--NDY-KENNATSEYRIEVVKRLPNLKKLD--GMPVDV  186 (198)
T ss_dssp             EECSCHHH--HHH-HTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred             EecCCccc--ccc-ccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence            99999887  333 32         1377789999887  666653

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.40  E-value=3.8e-14  Score=120.73  Aligned_cols=39  Identities=15%  Similarity=0.052  Sum_probs=20.8

Q ss_pred             ccccCCCCCcEEecCCCcccCCCc-chhhhcCCCCCCEEEcC
Q 038163           13 QGYNGLRKLKSLDLSGVGVRDGSK-LLQSIGSFSSLNSLYLS   53 (207)
Q Consensus        13 ~~~~~l~~L~~L~ls~n~i~~~~~-~~~~~~~l~~L~~L~l~   53 (207)
                      .++..+++|++|++++|.+  ... ++..+..+++|++|+++
T Consensus       287 ~~~~~~~~L~~L~Ls~~~l--~~~~~~~~~~~~~~L~~L~L~  326 (592)
T 3ogk_B          287 ILFPFAAQIRKLDLLYALL--ETEDHCTLIQKCPNLEVLETR  326 (592)
T ss_dssp             GGGGGGGGCCEEEETTCCC--CHHHHHHHHTTCTTCCEEEEE
T ss_pred             HHHhhcCCCcEEecCCCcC--CHHHHHHHHHhCcCCCEEecc
Confidence            3455666777777777765  222 22334445555555544

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.37  E-value=1.3e-12  Score=111.27  Aligned_cols=122  Identities=20%  Similarity=0.200  Sum_probs=88.3

Q ss_pred             CcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcCCCCCChHHHHhhcccccccC
Q 038163           21 LKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDDSPLHISLLQSIASIFPLLK  100 (207)
Q Consensus        21 L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~  100 (207)
                      |+.|++++|.+   ..+|. +..+++|+.|++++|.++ .+|   ..+..+++|++|++++|.++               
T Consensus       443 L~~L~Ls~n~l---~~lp~-~~~l~~L~~L~Ls~N~l~-~lp---~~~~~l~~L~~L~Ls~N~l~---------------  499 (567)
T 1dce_A          443 VRVLHLAHKDL---TVLCH-LEQLLLVTHLDLSHNRLR-ALP---PALAALRCLEVLQASDNALE---------------  499 (567)
T ss_dssp             CSEEECTTSCC---SSCCC-GGGGTTCCEEECCSSCCC-CCC---GGGGGCTTCCEEECCSSCCC---------------
T ss_pred             ceEEEecCCCC---CCCcC-ccccccCcEeecCccccc-ccc---hhhhcCCCCCEEECCCCCCC---------------
Confidence            66677777777   33554 677777777777777777 456   56667777777777777765               


Q ss_pred             CcccceeccccccccCCCCCCCccceecccccccccCchh-HHHHHhcCCCccEEEccCCccCcccccchh--hhhcCCC
Q 038163          101 NLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSF-LQIISESMSSLKYLSLSYYTLGINSSETLN--QGLCSLV  177 (207)
Q Consensus       101 n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~~-~~~l~~~~~~L~~L~l~~n~~~~~~~i~~~--~~~~~~~  177 (207)
                          + +|        .+..+++|+.|+++  +|.+++.. |..+. .+++|+.|++++|.++  +.. +.  ..+..++
T Consensus       500 ----~-lp--------~l~~l~~L~~L~Ls--~N~l~~~~~p~~l~-~l~~L~~L~L~~N~l~--~~~-~~~~~l~~~lp  560 (567)
T 1dce_A          500 ----N-VD--------GVANLPRLQELLLC--NNRLQQSAAIQPLV-SCPRLVLLNLQGNSLC--QEE-GIQERLAEMLP  560 (567)
T ss_dssp             ----C-CG--------GGTTCSSCCEEECC--SSCCCSSSTTGGGG-GCTTCCEEECTTSGGG--GSS-SCTTHHHHHCT
T ss_pred             ----C-Cc--------ccCCCCCCcEEECC--CCCCCCCCCcHHHh-cCCCCCEEEecCCcCC--CCc-cHHHHHHHHCc
Confidence                2 33        56778899999999  99998765 88888 8999999999999998  332 21  1244478


Q ss_pred             CCceEEe
Q 038163          178 HLQELYI  184 (207)
Q Consensus       178 ~L~~L~l  184 (207)
                      +|+.|++
T Consensus       561 ~L~~L~l  567 (567)
T 1dce_A          561 SVSSILT  567 (567)
T ss_dssp             TCSEEEC
T ss_pred             ccCccCC
Confidence            8888864

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.36  E-value=1.6e-12  Score=103.34  Aligned_cols=177  Identities=12%  Similarity=0.099  Sum_probs=127.1

Q ss_pred             eecCccccC--------CCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcC
Q 038163            9 LVVPQGYNG--------LRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLD   80 (207)
Q Consensus         9 ~~p~~~~~~--------l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~   80 (207)
                      .+|+.+|.+        +++|++|+++. .+  ..-....|.++++|+.+++..|.+....+   ..+..+..+.+++..
T Consensus        83 ~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i--~~I~~~aF~~~~~L~~l~l~~n~i~~i~~---~aF~~~~~l~~l~~~  156 (329)
T 3sb4_A           83 FVPAYAFSNVVNGVTKGKQTLEKVILSE-KI--KNIEDAAFKGCDNLKICQIRKKTAPNLLP---EALADSVTAIFIPLG  156 (329)
T ss_dssp             EECTTTTEEEETTEEEECTTCCC-CBCT-TC--CEECTTTTTTCTTCCEEEBCCSSCCEECT---TSSCTTTCEEEECTT
T ss_pred             ccCHHHhcccccccccccCCCcEEECCc-cc--cchhHHHhhcCcccceEEcCCCCccccch---hhhcCCCceEEecCc
Confidence            578888888        99999999998 77  33344578899999999999998876655   566666666666654


Q ss_pred             CCCC-------C----------------------------------------------hHHHH----hhcccccc--cCC
Q 038163           81 DSPL-------H----------------------------------------------ISLLQ----SIASIFPL--LKN  101 (207)
Q Consensus        81 ~~~~-------~----------------------------------------------~~~~~----~l~~l~~L--~~n  101 (207)
                      ....       .                                              .....    ....++.+  ..|
T Consensus       157 ~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n  236 (329)
T 3sb4_A          157 SSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKT  236 (329)
T ss_dssp             CTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTB
T ss_pred             chhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCC
Confidence            4110       0                                              00000    12233333  555


Q ss_pred             cccceeccccccccCCCCCCCccceecccccccccCchhHHHHHhcCCCcc-EEEccCCccCcccccchhhhhcCCCCCc
Q 038163          102 LSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLK-YLSLSYYTLGINSSETLNQGLCSLVHLQ  180 (207)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~-~L~l~~n~~~~~~~i~~~~~~~~~~~L~  180 (207)
                      .++. ++..      .|..|.+|+.+++.  .| +.......+. .+.+|+ .+.+.. .+.   .| +...|.+|++|+
T Consensus       237 ~i~~-I~~~------aF~~~~~L~~l~l~--~n-i~~I~~~aF~-~~~~L~~~l~l~~-~l~---~I-~~~aF~~c~~L~  300 (329)
T 3sb4_A          237 NATT-IPDF------TFAQKKYLLKIKLP--HN-LKTIGQRVFS-NCGRLAGTLELPA-SVT---AI-EFGAFMGCDNLR  300 (329)
T ss_dssp             CCCE-ECTT------TTTTCTTCCEEECC--TT-CCEECTTTTT-TCTTCCEEEEECT-TCC---EE-CTTTTTTCTTEE
T ss_pred             Ccce-ecHh------hhhCCCCCCEEECC--cc-cceehHHHhh-CChhccEEEEEcc-cce---EE-chhhhhCCccCC
Confidence            5554 3332      88999999999998  77 5544456667 889999 999988 676   77 545899999999


Q ss_pred             eEEecCCcCCCCccccccCCCCCccCC
Q 038163          181 ELYIASNDLRGSLPWCMANMTSLRILD  207 (207)
Q Consensus       181 ~L~l~~n~l~~~~p~~~~~l~~L~~l~  207 (207)
                      .++++.|.+....+..|..+++|+.++
T Consensus       301 ~l~l~~n~i~~I~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          301 YVLATGDKITTLGDELFGNGVPSKLIY  327 (329)
T ss_dssp             EEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred             EEEeCCCccCccchhhhcCCcchhhhc
Confidence            999999999876668999999998764

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.32  E-value=1.3e-11  Score=89.05  Aligned_cols=62  Identities=19%  Similarity=0.212  Sum_probs=29.2

Q ss_pred             CCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcCCCCCC
Q 038163           19 RKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDDSPLH   85 (207)
Q Consensus        19 ~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~   85 (207)
                      +++++|++++|.+  ....|..|..+++|++|++++|.++...+   ..+..+++|++|++++|.+.
T Consensus        30 ~~l~~L~L~~N~i--~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~---~~f~~l~~L~~L~L~~N~l~   91 (170)
T 3g39_A           30 TTTQVLYLYDNQI--TKLEPGVFDRLTQLTRLDLDNNQLTVLPA---GVFDKLTQLTQLSLNDNQLK   91 (170)
T ss_dssp             TTCSEEECCSSCC--CCCCTTTTTTCTTCSEEECCSSCCCCCCT---TTTTTCTTCCEEECCSSCCC
T ss_pred             CCCcEEEcCCCcC--CccChhhhcCcccCCEEECCCCCcCccCh---hhccCCCCCCEEECCCCccC
Confidence            4444555555555  23334444445555555555555544333   33344455555555555443

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.32  E-value=5.6e-12  Score=91.00  Aligned_cols=106  Identities=20%  Similarity=0.228  Sum_probs=84.6

Q ss_pred             CCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcCCCCCChHHHHhhccccccc
Q 038163           20 KLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDDSPLHISLLQSIASIFPLL   99 (207)
Q Consensus        20 ~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~   99 (207)
                      ..+++++++|.+   ..+|..+  .+.|++|++++|.+++..|   ..+..+++|++|++++|.++              
T Consensus        10 ~~~~l~~s~n~l---~~ip~~~--~~~l~~L~L~~N~i~~~~~---~~~~~l~~L~~L~Ls~N~l~--------------   67 (170)
T 3g39_A           10 SGTTVDCSGKSL---ASVPTGI--PTTTQVLYLYDNQITKLEP---GVFDRLTQLTRLDLDNNQLT--------------   67 (170)
T ss_dssp             ETTEEECTTSCC---SSCCSCC--CTTCSEEECCSSCCCCCCT---TTTTTCTTCSEEECCSSCCC--------------
T ss_pred             CCCEEEeCCCCc---CccCccC--CCCCcEEEcCCCcCCccCh---hhhcCcccCCEEECCCCCcC--------------
Confidence            457899999999   5677655  3889999999999999878   78889999999999999987              


Q ss_pred             CCcccceeccccccccCCCCCCCccceecccccccccCchhHHHHHhcCCCccEEEccCCccC
Q 038163          100 KNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSLSYYTLG  162 (207)
Q Consensus       100 ~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L~l~~n~~~  162 (207)
                            .++..      .+..+++|++|+++  +|.++...+..+. .+++|+.|++++|.+.
T Consensus        68 ------~l~~~------~f~~l~~L~~L~L~--~N~l~~~~~~~~~-~l~~L~~L~L~~N~~~  115 (170)
T 3g39_A           68 ------VLPAG------VFDKLTQLTQLSLN--DNQLKSIPRGAFD-NLKSLTHIWLLNNPWD  115 (170)
T ss_dssp             ------CCCTT------TTTTCTTCCEEECC--SSCCCCCCTTTTT-TCTTCCEEECCSSCBC
T ss_pred             ------ccChh------hccCCCCCCEEECC--CCccCEeCHHHhc-CCCCCCEEEeCCCCCC
Confidence                  22321      56778888888888  8888755555566 7888888888888776

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.32  E-value=1.4e-11  Score=89.23  Aligned_cols=62  Identities=23%  Similarity=0.289  Sum_probs=27.7

Q ss_pred             CCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcCCCCCC
Q 038163           19 RKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDDSPLH   85 (207)
Q Consensus        19 ~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~   85 (207)
                      +++++|++++|.+  ....|..|..+++|++|++++|.+++..+   ..+..+++|++|++++|.+.
T Consensus        33 ~~L~~L~Ls~N~l--~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~---~~~~~l~~L~~L~L~~N~l~   94 (174)
T 2r9u_A           33 TDKQRLWLNNNQI--TKLEPGVFDHLVNLQQLYFNSNKLTAIPT---GVFDKLTQLTQLDLNDNHLK   94 (174)
T ss_dssp             TTCSEEECCSSCC--CCCCTTTTTTCTTCCEEECCSSCCCCCCT---TTTTTCTTCCEEECCSSCCC
T ss_pred             CCCcEEEeCCCCc--cccCHHHhcCCcCCCEEECCCCCCCccCh---hHhCCcchhhEEECCCCccc
Confidence            4444444444444  23333444444444444444444444332   22344444444444444443

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.31  E-value=3.3e-13  Score=109.21  Aligned_cols=163  Identities=19%  Similarity=0.183  Sum_probs=107.4

Q ss_pred             CCCCcEEecCCCcccCCCcchhhh----cC-CCCCCEEEcCCCcCCcccccchhccc-CCCCccEEEcCCCCCChHHHHh
Q 038163           18 LRKLKSLDLSGVGVRDGSKLLQSI----GS-FSSLNSLYLSSNNFTETVTITTQELH-NFTNMEYLKLDDSPLHISLLQS   91 (207)
Q Consensus        18 l~~L~~L~ls~n~i~~~~~~~~~~----~~-l~~L~~L~l~~n~~~~~~~~~~~~l~-~l~~L~~L~l~~~~~~~~~~~~   91 (207)
                      ++.+++|++++|.+  .......+    .. .++|+.|++++|.++....   ..+. .+++|++|++++|.++......
T Consensus        71 ~~~L~~L~Ls~n~l--~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~---~~l~~~L~~L~~L~Ls~n~l~~~~~~~  145 (372)
T 3un9_A           71 LSSLRQLNLAGVRM--TPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGL---RTLLPVFLRARKLGLQLNSLGPEACKD  145 (372)
T ss_dssp             HTTCCEEECTTSCC--CHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHH---HHTHHHHHTEEEEECCSSCCCHHHHHH
T ss_pred             HhhCCEEEecCCCC--CHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHH---HHHHHHHHhccHhhcCCCCCCHHHHHH
Confidence            35678888888888  33333332    22 2688888888888875433   2322 3457888888888887655444


Q ss_pred             h--------cccccc--cCCcccce----eccccccccCCCCCCCccceecccccccccCchh----HHHHHhcCCCccE
Q 038163           92 I--------ASIFPL--LKNLSMIG----CEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSF----LQIISESMSSLKY  153 (207)
Q Consensus        92 l--------~~l~~L--~~n~~~~~----~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~~----~~~l~~~~~~L~~  153 (207)
                      +        ..++.|  ++|.++..    ++.       .+..+++|++|+++  +|.+++..    ...+. ..++|+.
T Consensus       146 L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~-------~L~~~~~L~~L~Ls--~N~l~~~g~~~L~~~L~-~~~~L~~  215 (372)
T 3un9_A          146 LRDLLLHDQCQITTLRLSNNPLTAAGVAVLME-------GLAGNTSVTHLSLL--HTGLGDEGLELLAAQLD-RNRQLQE  215 (372)
T ss_dssp             HHHHHHSTTCCCCEEECCSSCCHHHHHHHHHH-------HHHTCSSCCEEECT--TSSCHHHHHHHHHHHGG-GCSCCCE
T ss_pred             HHHHHHhcCCccceeeCCCCCCChHHHHHHHH-------HHhcCCCcCEEeCC--CCCCCcHHHHHHHHHHh-cCCCcCe
Confidence            3        234444  66666542    222       44567889999999  99987654    34445 6778999


Q ss_pred             EEccCCccCccc--ccchhhhhcCCCCCceEEecCCcCCCCccccc
Q 038163          154 LSLSYYTLGINS--SETLNQGLCSLVHLQELYIASNDLRGSLPWCM  197 (207)
Q Consensus       154 L~l~~n~~~~~~--~i~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~  197 (207)
                      |++++|.++..+  .+ .. .+...++|+.|++++|.+.+.....+
T Consensus       216 L~Ls~N~i~~~g~~~l-~~-~L~~~~~L~~L~Ls~N~i~~~g~~~L  259 (372)
T 3un9_A          216 LNVAYNGAGDTAALAL-AR-AAREHPSLELLHLYFNELSSEGRQVL  259 (372)
T ss_dssp             EECCSSCCCHHHHHHH-HH-HHHHCSSCCEEECTTSSCCHHHHHHH
T ss_pred             EECCCCCCCHHHHHHH-HH-HHHhCCCCCEEeccCCCCCHHHHHHH
Confidence            999999997211  12 22 45567889999999999875544444

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.29  E-value=9.2e-12  Score=90.21  Aligned_cols=105  Identities=15%  Similarity=0.217  Sum_probs=84.5

Q ss_pred             CcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcCCCCCChHHHHhhcccccccC
Q 038163           21 LKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDDSPLHISLLQSIASIFPLLK  100 (207)
Q Consensus        21 L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~  100 (207)
                      -+.++++++.+   ..+|..+.  ++|++|++++|.+++..|   ..+..+++|++|+|++|.++               
T Consensus        14 ~~~l~~~~n~l---~~iP~~~~--~~L~~L~Ls~N~l~~~~~---~~~~~l~~L~~L~Ls~N~l~---------------   70 (174)
T 2r9u_A           14 QTLVNCQNIRL---ASVPAGIP--TDKQRLWLNNNQITKLEP---GVFDHLVNLQQLYFNSNKLT---------------   70 (174)
T ss_dssp             SSEEECCSSCC---SSCCSCCC--TTCSEEECCSSCCCCCCT---TTTTTCTTCCEEECCSSCCC---------------
T ss_pred             CcEEEeCCCCC---CccCCCcC--CCCcEEEeCCCCccccCH---HHhcCCcCCCEEECCCCCCC---------------
Confidence            46899999999   66777654  899999999999998878   78889999999999999987               


Q ss_pred             CcccceeccccccccCCCCCCCccceecccccccccCchhHHHHHhcCCCccEEEccCCccC
Q 038163          101 NLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSLSYYTLG  162 (207)
Q Consensus       101 n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L~l~~n~~~  162 (207)
                           .+|..      .+..+++|++|+++  +|.++...+..+. .+++|+.|++++|.+.
T Consensus        71 -----~i~~~------~~~~l~~L~~L~L~--~N~l~~l~~~~~~-~l~~L~~L~L~~N~~~  118 (174)
T 2r9u_A           71 -----AIPTG------VFDKLTQLTQLDLN--DNHLKSIPRGAFD-NLKSLTHIYLYNNPWD  118 (174)
T ss_dssp             -----CCCTT------TTTTCTTCCEEECC--SSCCCCCCTTTTT-TCTTCSEEECCSSCBC
T ss_pred             -----ccChh------HhCCcchhhEEECC--CCccceeCHHHhc-cccCCCEEEeCCCCcc
Confidence                 23331      45778888888888  8888754444466 7888888888888876

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.23  E-value=1e-12  Score=111.90  Aligned_cols=81  Identities=17%  Similarity=0.236  Sum_probs=39.1

Q ss_pred             CCCccceecccccccccCchhHHHHHhcCCCccEEEccCCccCcccccchhhhhcCCCCCceEEecCCcCCCCcc-cccc
Q 038163          120 HSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSLSYYTLGINSSETLNQGLCSLVHLQELYIASNDLRGSLP-WCMA  198 (207)
Q Consensus       120 ~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L~l~~n~~~~~~~i~~~~~~~~~~~L~~L~l~~n~l~~~~p-~~~~  198 (207)
                      .+++|+.|+++  + .+++..+..+...+++|+.|++++|.++  +.. .......+++|+.|++++|.+.+..+ ..+.
T Consensus       430 ~~~~L~~L~L~--~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~--~~~-~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~  503 (594)
T 2p1m_B          430 HCKDLRRLSLS--G-LLTDKVFEYIGTYAKKMEMLSVAFAGDS--DLG-MHHVLSGCDSLRKLEIRDCPFGDKALLANAS  503 (594)
T ss_dssp             HCTTCCEEECC--S-SCCHHHHHHHHHHCTTCCEEEEESCCSS--HHH-HHHHHHHCTTCCEEEEESCSCCHHHHHHTGG
T ss_pred             hCCCccEEeec--C-cccHHHHHHHHHhchhccEeeccCCCCc--HHH-HHHHHhcCCCcCEEECcCCCCcHHHHHHHHH
Confidence            34556666665  4 4444444444412556666666666654  222 22012445666666666666543222 2233


Q ss_pred             CCCCCccC
Q 038163          199 NMTSLRIL  206 (207)
Q Consensus       199 ~l~~L~~l  206 (207)
                      .+++|+.|
T Consensus       504 ~l~~L~~L  511 (594)
T 2p1m_B          504 KLETMRSL  511 (594)
T ss_dssp             GGGGSSEE
T ss_pred             hCCCCCEE
Confidence            34555443

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.23  E-value=3.5e-12  Score=108.57  Aligned_cols=174  Identities=17%  Similarity=0.126  Sum_probs=102.2

Q ss_pred             cCCCCCcEEecCCCcccCCCc--chhhhcCCCCCCEEEcCCCcCCc----ccccchhcccCCCCccEEEcCCCCCChHHH
Q 038163           16 NGLRKLKSLDLSGVGVRDGSK--LLQSIGSFSSLNSLYLSSNNFTE----TVTITTQELHNFTNMEYLKLDDSPLHISLL   89 (207)
Q Consensus        16 ~~l~~L~~L~ls~n~i~~~~~--~~~~~~~l~~L~~L~l~~n~~~~----~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~   89 (207)
                      ..+++|++|++++|.+.+.+.  ++..+..+++|++|++++|.+++    .++   ..+..+++|++|++++|.+.+ .+
T Consensus       161 ~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~---~~~~~~~~L~~L~L~~~~~~~-l~  236 (592)
T 3ogk_B          161 THCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLE---TIARNCRSLVSVKVGDFEILE-LV  236 (592)
T ss_dssp             HHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHH---HHHHHCTTCCEEECSSCBGGG-GH
T ss_pred             hhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHH---HHHhhCCCCcEEeccCccHHH-HH
Confidence            356777777777777632111  44455667777777777777662    222   234466778888887776653 33


Q ss_pred             Hhhcccccc-----cCC-cc-------------------------cceeccccccccCCCCCCCccceecccccccccCc
Q 038163           90 QSIASIFPL-----LKN-LS-------------------------MIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNT  138 (207)
Q Consensus        90 ~~l~~l~~L-----~~n-~~-------------------------~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~  138 (207)
                      ..+..+++|     ... ..                         ...++.       .+..+++|++|+++  +|.+++
T Consensus       237 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~-------~~~~~~~L~~L~Ls--~~~l~~  307 (592)
T 3ogk_B          237 GFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPI-------LFPFAAQIRKLDLL--YALLET  307 (592)
T ss_dssp             HHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGG-------GGGGGGGCCEEEET--TCCCCH
T ss_pred             HHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHH-------HHhhcCCCcEEecC--CCcCCH
Confidence            334333333     110 00                         001111       34457788888888  888765


Q ss_pred             hhH-HHHHhcCCCccEEEccCCccCcccccchhhhhcCCCCCceEEecC-----------CcCCCC-ccccccCCCCCcc
Q 038163          139 SFL-QIISESMSSLKYLSLSYYTLGINSSETLNQGLCSLVHLQELYIAS-----------NDLRGS-LPWCMANMTSLRI  205 (207)
Q Consensus       139 ~~~-~~l~~~~~~L~~L~l~~n~~~~~~~i~~~~~~~~~~~L~~L~l~~-----------n~l~~~-~p~~~~~l~~L~~  205 (207)
                      ... ..+. .+++|+.|+++ +.+. ++.+ +. ....+++|+.|++++           +.+++. ++.....+++|+.
T Consensus       308 ~~~~~~~~-~~~~L~~L~L~-~~~~-~~~l-~~-~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~  382 (592)
T 3ogk_B          308 EDHCTLIQ-KCPNLEVLETR-NVIG-DRGL-EV-LAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEY  382 (592)
T ss_dssp             HHHHHHHT-TCTTCCEEEEE-GGGH-HHHH-HH-HHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSE
T ss_pred             HHHHHHHH-hCcCCCEEecc-CccC-HHHH-HH-HHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeE
Confidence            554 3355 78889999888 4443 0233 33 456788899999983           555543 2333456788876


Q ss_pred             CC
Q 038163          206 LD  207 (207)
Q Consensus       206 l~  207 (207)
                      |+
T Consensus       383 L~  384 (592)
T 3ogk_B          383 MA  384 (592)
T ss_dssp             EE
T ss_pred             EE
Confidence            53

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.21  E-value=1.1e-11  Score=98.58  Aligned_cols=176  Identities=15%  Similarity=0.127  Sum_probs=104.2

Q ss_pred             CCCCcEEecCCCccc--CCC---------------cch-hhhcC--------CCCCCEEEcCCCcCCcccccchhcccCC
Q 038163           18 LRKLKSLDLSGVGVR--DGS---------------KLL-QSIGS--------FSSLNSLYLSSNNFTETVTITTQELHNF   71 (207)
Q Consensus        18 l~~L~~L~ls~n~i~--~~~---------------~~~-~~~~~--------l~~L~~L~l~~n~~~~~~~~~~~~l~~l   71 (207)
                      +++|++|||++|.+.  ...               .+| ..|.+        +++|+.+++.. .++....   ..+..+
T Consensus        48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~---~aF~~~  123 (329)
T 3sb4_A           48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIED---AAFKGC  123 (329)
T ss_dssp             CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECT---TTTTTC
T ss_pred             hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-cccchhH---HHhhcC
Confidence            678999999999983  000               223 35667        99999999998 7877666   678899


Q ss_pred             CCccEEEcCCCCCChHHHHhhcccccc---cCCc--c---cceeccccccccCCC-------------------------
Q 038163           72 TNMEYLKLDDSPLHISLLQSIASIFPL---LKNL--S---MIGCEVNGVIRGQDF-------------------------  118 (207)
Q Consensus        72 ~~L~~L~l~~~~~~~~~~~~l~~l~~L---~~n~--~---~~~~~~~~~~~~~~~-------------------------  118 (207)
                      ++|+.+++++|.+.......+..+..+   ..+.  .   ...+....+.+...+                         
T Consensus       124 ~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~  203 (329)
T 3sb4_A          124 DNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRD  203 (329)
T ss_dssp             TTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGG
T ss_pred             cccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCccc
Confidence            999999999998753333333333222   0000  0   000000000000000                         


Q ss_pred             -------------------CCCCccceecccccccccCchhHHHHHhcCCCccEEEccCCccCcccccchhhhhcCCCCC
Q 038163          119 -------------------PHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSLSYYTLGINSSETLNQGLCSLVHL  179 (207)
Q Consensus       119 -------------------~~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L~l~~n~~~~~~~i~~~~~~~~~~~L  179 (207)
                                         ..+++|+.+++.  .|.++......+. .|.+|+.+.+..| +.   .| +..+|.++.+|
T Consensus       204 ~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~--~n~i~~I~~~aF~-~~~~L~~l~l~~n-i~---~I-~~~aF~~~~~L  275 (329)
T 3sb4_A          204 INFLTIEGKLDNADFKLIRDYMPNLVSLDIS--KTNATTIPDFTFA-QKKYLLKIKLPHN-LK---TI-GQRVFSNCGRL  275 (329)
T ss_dssp             CSEEEEEECCCHHHHHHHHHHCTTCCEEECT--TBCCCEECTTTTT-TCTTCCEEECCTT-CC---EE-CTTTTTTCTTC
T ss_pred             cceEEEeeeecHHHHHHHHHhcCCCeEEECC--CCCcceecHhhhh-CCCCCCEEECCcc-cc---ee-hHHHhhCChhc
Confidence                               025667777777  6666643344555 6677777777766 54   55 44467777777


Q ss_pred             c-eEEecCCcCCCCccccccCCCCCccC
Q 038163          180 Q-ELYIASNDLRGSLPWCMANMTSLRIL  206 (207)
Q Consensus       180 ~-~L~l~~n~l~~~~p~~~~~l~~L~~l  206 (207)
                      + .+++.. .+....+..|..|++|+.+
T Consensus       276 ~~~l~l~~-~l~~I~~~aF~~c~~L~~l  302 (329)
T 3sb4_A          276 AGTLELPA-SVTAIEFGAFMGCDNLRYV  302 (329)
T ss_dssp             CEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred             cEEEEEcc-cceEEchhhhhCCccCCEE
Confidence            7 777776 4443344667777777654

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.18  E-value=5.1e-12  Score=107.50  Aligned_cols=66  Identities=17%  Similarity=0.232  Sum_probs=29.5

Q ss_pred             CCCCCcEEecCCC-cccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcc-cCCCCccEEEcCCCC
Q 038163           17 GLRKLKSLDLSGV-GVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQEL-HNFTNMEYLKLDDSP   83 (207)
Q Consensus        17 ~l~~L~~L~ls~n-~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l-~~l~~L~~L~l~~~~   83 (207)
                      .+++|++|++++| .+. ...++..+..+++|++|++++|.+++..+.++..+ ..+++|++|++++|.
T Consensus       128 ~~~~L~~L~L~~~~~~~-~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~  195 (594)
T 2p1m_B          128 SFKNFKVLVLSSCEGFS-TDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA  195 (594)
T ss_dssp             HCTTCCEEEEESCEEEE-HHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC
T ss_pred             hCCCCcEEeCCCcCCCC-HHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC
Confidence            3455555555555 231 01133333455555556555555444322111111 144556666665554

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.12  E-value=2.1e-11  Score=98.67  Aligned_cols=129  Identities=19%  Similarity=0.249  Sum_probs=93.7

Q ss_pred             CCCcEEecCCCcccCCCcchh-hhcCCCCCCEEEcCCCcCCcccccchhcc-----cCCCCccEEEcCCCCCChHHHHh-
Q 038163           19 RKLKSLDLSGVGVRDGSKLLQ-SIGSFSSLNSLYLSSNNFTETVTITTQEL-----HNFTNMEYLKLDDSPLHISLLQS-   91 (207)
Q Consensus        19 ~~L~~L~ls~n~i~~~~~~~~-~~~~l~~L~~L~l~~n~~~~~~~~~~~~l-----~~l~~L~~L~l~~~~~~~~~~~~-   91 (207)
                      ++|++|++++|.+  ...... ....+++|+.|++++|.+++...   ..+     ...+.|++|+|++|.++...... 
T Consensus       101 ~~L~~L~Ls~n~l--~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~---~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l  175 (372)
T 3un9_A          101 HALDEVNLASCQL--DPAGLRTLLPVFLRARKLGLQLNSLGPEAC---KDLRDLLLHDQCQITTLRLSNNPLTAAGVAVL  175 (372)
T ss_dssp             SCEEEEECTTCCC--CHHHHHHTHHHHHTEEEEECCSSCCCHHHH---HHHHHHHHSTTCCCCEEECCSSCCHHHHHHHH
T ss_pred             CCceEEEecCCCC--CHHHHHHHHHHHHhccHhhcCCCCCCHHHH---HHHHHHHHhcCCccceeeCCCCCCChHHHHHH
Confidence            7899999999999  333333 33446789999999999986544   333     35678999999999997644332 


Q ss_pred             ---hc---ccccc--cCCcccce----eccccccccCCCCCCCccceecccccccccCchhH----HHHHhcCCCccEEE
Q 038163           92 ---IA---SIFPL--LKNLSMIG----CEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFL----QIISESMSSLKYLS  155 (207)
Q Consensus        92 ---l~---~l~~L--~~n~~~~~----~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~~~----~~l~~~~~~L~~L~  155 (207)
                         +.   .++.|  ++|.+...    ++.       .+..+++|+.|+++  +|.+++...    ..+. ..+.|+.|+
T Consensus       176 ~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~-------~L~~~~~L~~L~Ls--~N~i~~~g~~~l~~~L~-~~~~L~~L~  245 (372)
T 3un9_A          176 MEGLAGNTSVTHLSLLHTGLGDEGLELLAA-------QLDRNRQLQELNVA--YNGAGDTAALALARAAR-EHPSLELLH  245 (372)
T ss_dssp             HHHHHTCSSCCEEECTTSSCHHHHHHHHHH-------HGGGCSCCCEEECC--SSCCCHHHHHHHHHHHH-HCSSCCEEE
T ss_pred             HHHHhcCCCcCEEeCCCCCCCcHHHHHHHH-------HHhcCCCcCeEECC--CCCCCHHHHHHHHHHHH-hCCCCCEEe
Confidence               23   34444  77777642    233       56677899999999  999986543    4455 678999999


Q ss_pred             ccCCccC
Q 038163          156 LSYYTLG  162 (207)
Q Consensus       156 l~~n~~~  162 (207)
                      +++|.++
T Consensus       246 Ls~N~i~  252 (372)
T 3un9_A          246 LYFNELS  252 (372)
T ss_dssp             CTTSSCC
T ss_pred             ccCCCCC
Confidence            9999998

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.11  E-value=3.9e-10  Score=90.01  Aligned_cols=96  Identities=14%  Similarity=0.175  Sum_probs=72.4

Q ss_pred             ccCceecCccccCCCCCcEEecCC-CcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcCCCC
Q 038163            5 EINNLVVPQGYNGLRKLKSLDLSG-VGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDDSP   83 (207)
Q Consensus         5 ~~~~~~p~~~~~~l~~L~~L~ls~-n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~~~~   83 (207)
                      .+. .+|.  +..+.+|++|+|++ |.+  ....+..|..+++|+.|+|++|.+++..|   ..+..+++|++|+|++|.
T Consensus        20 ~l~-~ip~--l~~~~~L~~L~l~~~n~l--~~~~~~~~~~l~~L~~L~l~~N~l~~~~~---~~~~~l~~L~~L~l~~N~   91 (347)
T 2ifg_A           20 ALD-SLHH--LPGAENLTELYIENQQHL--QHLELRDLRGLGELRNLTIVKSGLRFVAP---DAFHFTPRLSRLNLSFNA   91 (347)
T ss_dssp             CCT-TTTT--SCSCSCCSEEECCSCSSC--CEECGGGSCSCCCCSEEECCSSCCCEECT---TGGGSCSCCCEEECCSSC
T ss_pred             CCC-ccCC--CCCCCCeeEEEccCCCCC--CCcChhHhccccCCCEEECCCCccceeCH---HHhcCCcCCCEEeCCCCc
Confidence            666 4775  78888899999985 888  44445678888999999999998888777   677888889999999888


Q ss_pred             CChHHHHhhcccccccCCcccceeccccccccCCCCCCCccceecccccccccC
Q 038163           84 LHISLLQSIASIFPLLKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALN  137 (207)
Q Consensus        84 ~~~~~~~~l~~l~~L~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~  137 (207)
                      +.                    .+|..      .+..+. |+.|++.  +|.+.
T Consensus        92 l~--------------------~~~~~------~~~~~~-L~~l~l~--~N~~~  116 (347)
T 2ifg_A           92 LE--------------------SLSWK------TVQGLS-LQELVLS--GNPLH  116 (347)
T ss_dssp             CS--------------------CCCST------TTCSCC-CCEEECC--SSCCC
T ss_pred             cc--------------------eeCHH------HcccCC-ceEEEee--CCCcc
Confidence            86                    23331      333333 8888888  88776

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.06  E-value=2.5e-10  Score=91.07  Aligned_cols=104  Identities=19%  Similarity=0.260  Sum_probs=85.6

Q ss_pred             cEEecCCC-cccCCCcchhhhcCCCCCCEEEcCC-CcCCcccccchhcccCCCCccEEEcCCCCCChHHHHhhccccccc
Q 038163           22 KSLDLSGV-GVRDGSKLLQSIGSFSSLNSLYLSS-NNFTETVTITTQELHNFTNMEYLKLDDSPLHISLLQSIASIFPLL   99 (207)
Q Consensus        22 ~~L~ls~n-~i~~~~~~~~~~~~l~~L~~L~l~~-n~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~   99 (207)
                      ..++.+++ .+   ..+|. +..+++|+.|+|++ |.++...+   ..+..+++|++|+|++|.+++             
T Consensus        11 ~~v~~~~~n~l---~~ip~-l~~~~~L~~L~l~~~n~l~~~~~---~~~~~l~~L~~L~l~~N~l~~-------------   70 (347)
T 2ifg_A           11 SGLRCTRDGAL---DSLHH-LPGAENLTELYIENQQHLQHLEL---RDLRGLGELRNLTIVKSGLRF-------------   70 (347)
T ss_dssp             SCEECCSSCCC---TTTTT-SCSCSCCSEEECCSCSSCCEECG---GGSCSCCCCSEEECCSSCCCE-------------
T ss_pred             CEEEcCCCCCC---CccCC-CCCCCCeeEEEccCCCCCCCcCh---hHhccccCCCEEECCCCccce-------------
Confidence            46789988 88   56888 99999999999996 99998877   788999999999999999872             


Q ss_pred             CCcccceeccccccccCCCCCCCccceecccccccccCchhHHHHHhcCCCccEEEccCCccC
Q 038163          100 KNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSLSYYTLG  162 (207)
Q Consensus       100 ~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L~l~~n~~~  162 (207)
                            ..+.       .|..+++|+.|+|+  +|.++...+..+. .+ .|+.|++.+|.+.
T Consensus        71 ------~~~~-------~~~~l~~L~~L~l~--~N~l~~~~~~~~~-~~-~L~~l~l~~N~~~  116 (347)
T 2ifg_A           71 ------VAPD-------AFHFTPRLSRLNLS--FNALESLSWKTVQ-GL-SLQELVLSGNPLH  116 (347)
T ss_dssp             ------ECTT-------GGGSCSCCCEEECC--SSCCSCCCSTTTC-SC-CCCEEECCSSCCC
T ss_pred             ------eCHH-------HhcCCcCCCEEeCC--CCccceeCHHHcc-cC-CceEEEeeCCCcc
Confidence                  2333       67889999999999  9999854444444 44 4999999999887

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.96  E-value=2.6e-09  Score=87.15  Aligned_cols=67  Identities=16%  Similarity=0.231  Sum_probs=35.5

Q ss_pred             eecCccccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcCCC
Q 038163            9 LVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDDS   82 (207)
Q Consensus         9 ~~p~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~~~   82 (207)
                      .++..+|.++.+|+.++++.|.+   ..++.....+..|+.+.+..+ +.....   ..+..+.+|+.+++..+
T Consensus       170 ~I~~~aF~~c~~L~~l~l~~n~l---~~I~~~aF~~~~L~~l~lp~~-l~~I~~---~aF~~~~~L~~l~l~~~  236 (401)
T 4fdw_A          170 QLKEDIFYYCYNLKKADLSKTKI---TKLPASTFVYAGIEEVLLPVT-LKEIGS---QAFLKTSQLKTIEIPEN  236 (401)
T ss_dssp             EECSSTTTTCTTCCEEECTTSCC---SEECTTTTTTCCCSEEECCTT-CCEECT---TTTTTCTTCCCEECCTT
T ss_pred             EehHHHhhCcccCCeeecCCCcc---eEechhhEeecccCEEEeCCc-hheehh---hHhhCCCCCCEEecCCC
Confidence            34555566666666666666655   333333223455666665532 343333   45556666666666543

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.89  E-value=4.1e-09  Score=76.93  Aligned_cols=127  Identities=17%  Similarity=0.092  Sum_probs=71.5

Q ss_pred             chhhhcCCCCCCEEEcCCC-cCCcccccc-hhcccCCCCccEEEcCCCCCChHHHHhhcccccccCCcccceeccccccc
Q 038163           37 LLQSIGSFSSLNSLYLSSN-NFTETVTIT-TQELHNFTNMEYLKLDDSPLHISLLQSIASIFPLLKNLSMIGCEVNGVIR  114 (207)
Q Consensus        37 ~~~~~~~l~~L~~L~l~~n-~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~n~~~~~~~~~~~~~  114 (207)
                      +...+...+.|++|++++| .+....... ...+...+.|++|+|++|.+.......+.               .     
T Consensus        28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~---------------~-----   87 (185)
T 1io0_A           28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALA---------------E-----   87 (185)
T ss_dssp             HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHH---------------H-----
T ss_pred             HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHH---------------H-----
Confidence            3445556677777777777 666432100 03445566777777777777655443322               1     


Q ss_pred             cCCCCCCCccceecccccccccCchhHH----HHHhcCCCccEEEc--cCCccCcccc--cchhhhhcCCCCCceEEecC
Q 038163          115 GQDFPHSKSLEHLDMEFMRIALNTSFLQ----IISESMSSLKYLSL--SYYTLGINSS--ETLNQGLCSLVHLQELYIAS  186 (207)
Q Consensus       115 ~~~~~~~~~L~~L~l~~~~n~~~~~~~~----~l~~~~~~L~~L~l--~~n~~~~~~~--i~~~~~~~~~~~L~~L~l~~  186 (207)
                        .+...+.|++|+++  +|.+++....    .+. ..+.|++|++  ++|.+...+.  + .. .+...++|+.|++++
T Consensus        88 --~L~~n~~L~~L~L~--~N~i~~~g~~~l~~~L~-~n~~L~~L~L~~~~N~i~~~g~~~l-~~-~L~~n~~L~~L~L~~  160 (185)
T 1io0_A           88 --MLKVNNTLKSLNVE--SNFISGSGILALVEALQ-SNTSLIELRIDNQSQPLGNNVEMEI-AN-MLEKNTTLLKFGYHF  160 (185)
T ss_dssp             --HHHHCSSCCEEECC--SSCCCHHHHHHHHHGGG-GCSSCCEEECCCCSSCCCHHHHHHH-HH-HHHHCSSCCEEECCC
T ss_pred             --HHHhCCCcCEEECc--CCcCCHHHHHHHHHHHH-hCCCceEEEecCCCCCCCHHHHHHH-HH-HHHhCCCcCEEeccC
Confidence              23334557777777  7777654432    233 4456777777  6677762111  2 22 444556777777777


Q ss_pred             CcCC
Q 038163          187 NDLR  190 (207)
Q Consensus       187 n~l~  190 (207)
                      |.+.
T Consensus       161 n~i~  164 (185)
T 1io0_A          161 TQQG  164 (185)
T ss_dssp             SSHH
T ss_pred             CCCC
Confidence            7664

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.80  E-value=5.7e-09  Score=76.15  Aligned_cols=124  Identities=10%  Similarity=0.170  Sum_probs=93.0

Q ss_pred             cccCCCCCcEEecCCC-cccCC--CcchhhhcCCCCCCEEEcCCCcCCcccccc-hhcccCCCCccEEEcCCCCCChHHH
Q 038163           14 GYNGLRKLKSLDLSGV-GVRDG--SKLLQSIGSFSSLNSLYLSSNNFTETVTIT-TQELHNFTNMEYLKLDDSPLHISLL   89 (207)
Q Consensus        14 ~~~~l~~L~~L~ls~n-~i~~~--~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~   89 (207)
                      ++...+.|++|++++| .+.+.  ..+...+...++|++|++++|.+.+..... ...+...+.|++|+|++|.+.....
T Consensus        31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~  110 (185)
T 1io0_A           31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI  110 (185)
T ss_dssp             HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred             HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence            4577899999999999 88221  124556677899999999999998643210 0345566889999999999997765


Q ss_pred             HhhcccccccCCcccceeccccccccCCCCCCCccceecc--cccccccCchhH----HHHHhcCCCccEEEccCCccC
Q 038163           90 QSIASIFPLLKNLSMIGCEVNGVIRGQDFPHSKSLEHLDM--EFMRIALNTSFL----QIISESMSSLKYLSLSYYTLG  162 (207)
Q Consensus        90 ~~l~~l~~L~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l--~~~~n~~~~~~~----~~l~~~~~~L~~L~l~~n~~~  162 (207)
                      ..+.               .       .+...+.|++|++  +  +|.++....    ..+. ..+.|++|++++|.+.
T Consensus       111 ~~l~---------------~-------~L~~n~~L~~L~L~~~--~N~i~~~g~~~l~~~L~-~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          111 LALV---------------E-------ALQSNTSLIELRIDNQ--SQPLGNNVEMEIANMLE-KNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHHH---------------H-------GGGGCSSCCEEECCCC--SSCCCHHHHHHHHHHHH-HCSSCCEEECCCSSHH
T ss_pred             HHHH---------------H-------HHHhCCCceEEEecCC--CCCCCHHHHHHHHHHHH-hCCCcCEEeccCCCCC
Confidence            4332               2       5566778999999  8  899986543    4455 6689999999999987

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.76  E-value=3.5e-08  Score=79.41  Aligned_cols=168  Identities=14%  Similarity=0.115  Sum_probs=105.8

Q ss_pred             ccCCCCCcEEecCCCcc-------cCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcCCCCCChH
Q 038163           15 YNGLRKLKSLDLSGVGV-------RDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDDSPLHIS   87 (207)
Q Consensus        15 ~~~l~~L~~L~ls~n~i-------~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~   87 (207)
                      ...+++|+.|.+.....       .+...+...+..+|+|+.|+++++.-. ..+    .+ .+++|++|++..+.+...
T Consensus       135 ~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~----~~-~~~~L~~L~L~~~~l~~~  208 (362)
T 2ra8_A          135 KEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIG----KK-PRPNLKSLEIISGGLPDS  208 (362)
T ss_dssp             HHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCC----SC-BCTTCSEEEEECSBCCHH
T ss_pred             hhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eec----cc-cCCCCcEEEEecCCCChH
Confidence            35678899998865432       111235566778899999999887311 233    23 378999999999998876


Q ss_pred             HHHhhc--ccccc-----c--CCcccceeccccccccCCCCCCCccceecccccccccCchhHHHHHh--cCCCccEEEc
Q 038163           88 LLQSIA--SIFPL-----L--KNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFLQIISE--SMSSLKYLSL  156 (207)
Q Consensus        88 ~~~~l~--~l~~L-----~--~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~~~~~l~~--~~~~L~~L~l  156 (207)
                      ....+.  .+++|     .  .+...+.....+....-....+++|++|++.  +|.+.+..+..+.+  .++.|+.|++
T Consensus       209 ~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~--~~~i~~~~~~~la~a~~~~~L~~LdL  286 (362)
T 2ra8_A          209 VVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIV--DAEEQNVVVEMFLESDILPQLETMDI  286 (362)
T ss_dssp             HHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEE--SCTTHHHHHHHHHHCSSGGGCSEEEC
T ss_pred             HHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCC--CCCCchHHHHHHHhCccCCCCCEEEC
Confidence            655554  45555     1  1111111000000000011357899999999  99887665555541  3668999999


Q ss_pred             cCCccCccc--ccchhhhhcCCCCCceEEecCCcCCCC
Q 038163          157 SYYTLGINS--SETLNQGLCSLVHLQELYIASNDLRGS  192 (207)
Q Consensus       157 ~~n~~~~~~--~i~~~~~~~~~~~L~~L~l~~n~l~~~  192 (207)
                      +.|.+...+  .+ +. .+..+++|+.|+++.|.+++.
T Consensus       287 s~n~L~d~G~~~L-~~-~L~~l~~L~~L~L~~n~i~d~  322 (362)
T 2ra8_A          287 SAGVLTDEGARLL-LD-HVDKIKHLKFINMKYNYLSDE  322 (362)
T ss_dssp             CSSCCBHHHHHHH-HT-THHHHTTCSEEECCSBBCCHH
T ss_pred             CCCCCChHHHHHH-Hh-hcccCCcceEEECCCCcCCHH
Confidence            999998211  12 22 345679999999999988754

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.71  E-value=1.2e-07  Score=77.43  Aligned_cols=68  Identities=9%  Similarity=0.088  Sum_probs=36.3

Q ss_pred             eecCccccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcCCCCCC
Q 038163            9 LVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDDSPLH   85 (207)
Q Consensus         9 ~~p~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~   85 (207)
                      .|+..+|.+. +|+.+++..+ +  ..-....|.+ .+|+.+.+.. .+.....   ..+..+.+|+.++++.|.+.
T Consensus       126 ~I~~~aF~~~-~L~~i~l~~~-i--~~I~~~aF~~-~~L~~i~lp~-~l~~I~~---~aF~~c~~L~~l~l~~n~l~  193 (401)
T 4fdw_A          126 SIPKDAFRNS-QIAKVVLNEG-L--KSIGDMAFFN-STVQEIVFPS-TLEQLKE---DIFYYCYNLKKADLSKTKIT  193 (401)
T ss_dssp             EECTTTTTTC-CCSEEECCTT-C--CEECTTTTTT-CCCCEEECCT-TCCEECS---STTTTCTTCCEEECTTSCCS
T ss_pred             EehHhhcccC-CccEEEeCCC-c--cEECHHhcCC-CCceEEEeCC-CccEehH---HHhhCcccCCeeecCCCcce
Confidence            4555666654 5777776654 4  1222224444 3566666654 3444333   45556666666666665544

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.53  E-value=1.6e-07  Score=67.69  Aligned_cols=88  Identities=13%  Similarity=0.180  Sum_probs=54.2

Q ss_pred             CCCCEEEcCCCcCCcccccchhcccCCCCccEEEcCCCC-CChHHHHhhcccccccCCcccceeccccccccCCCCCCCc
Q 038163           45 SSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDDSP-LHISLLQSIASIFPLLKNLSMIGCEVNGVIRGQDFPHSKS  123 (207)
Q Consensus        45 ~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~l~~l~~L~~n~~~~~~~~~~~~~~~~~~~~~~  123 (207)
                      ..|+.||++++.+++..-   ..+..+++|++|+|++|. +++.....+..+.                      ..+++
T Consensus        61 ~~L~~LDLs~~~Itd~GL---~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~----------------------~~~~~  115 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGF---DHMEGLQYVEKIRLCKCHYIEDGCLERLSQLE----------------------NLQKS  115 (176)
T ss_dssp             CCEEEEEEESCCCCGGGG---GGGTTCSCCCEEEEESCTTCCHHHHHHHHTCH----------------------HHHHH
T ss_pred             ceEeEEeCcCCCccHHHH---HHhcCCCCCCEEEeCCCCccCHHHHHHHHhcc----------------------cccCC
Confidence            357777777777665443   556677777777777774 6655444332100                      01235


Q ss_pred             cceeccccccc-ccCchhHHHHHhcCCCccEEEccCCc
Q 038163          124 LEHLDMEFMRI-ALNTSFLQIISESMSSLKYLSLSYYT  160 (207)
Q Consensus       124 L~~L~l~~~~n-~~~~~~~~~l~~~~~~L~~L~l~~n~  160 (207)
                      |++|+++  +| .+++.....+. .+++|++|++++|.
T Consensus       116 L~~L~Ls--~C~~ITD~Gl~~L~-~~~~L~~L~L~~c~  150 (176)
T 3e4g_A          116 MLEMEII--SCGNVTDKGIIALH-HFRNLKYLFLSDLP  150 (176)
T ss_dssp             CCEEEEE--SCTTCCHHHHHHGG-GCTTCCEEEEESCT
T ss_pred             CCEEEcC--CCCcCCHHHHHHHh-cCCCCCEEECCCCC
Confidence            7777777  66 47766666666 67777777777765

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.45  E-value=1.8e-07  Score=67.42  Aligned_cols=63  Identities=11%  Similarity=0.192  Sum_probs=31.1

Q ss_pred             CCCCccceeccccccc-ccCchhHHHHHhcC----CCccEEEccCCc-cCcccccchhhhhcCCCCCceEEecCCc
Q 038163          119 PHSKSLEHLDMEFMRI-ALNTSFLQIISESM----SSLKYLSLSYYT-LGINSSETLNQGLCSLVHLQELYIASND  188 (207)
Q Consensus       119 ~~~~~L~~L~l~~~~n-~~~~~~~~~l~~~~----~~L~~L~l~~n~-~~~~~~i~~~~~~~~~~~L~~L~l~~n~  188 (207)
                      .++++|++|+++  +| .+++.....+. .+    ++|++|++++|. ++  +.- -. .+..+++|+.|++++|.
T Consensus        82 ~~~~~L~~L~L~--~C~~ItD~gL~~L~-~~~~~~~~L~~L~Ls~C~~IT--D~G-l~-~L~~~~~L~~L~L~~c~  150 (176)
T 3e4g_A           82 EGLQYVEKIRLC--KCHYIEDGCLERLS-QLENLQKSMLEMEIISCGNVT--DKG-II-ALHHFRNLKYLFLSDLP  150 (176)
T ss_dssp             TTCSCCCEEEEE--SCTTCCHHHHHHHH-TCHHHHHHCCEEEEESCTTCC--HHH-HH-HGGGCTTCCEEEEESCT
T ss_pred             cCCCCCCEEEeC--CCCccCHHHHHHHH-hcccccCCCCEEEcCCCCcCC--HHH-HH-HHhcCCCCCEEECCCCC
Confidence            345555555565  55 25554444444 32    245566665553 44  111 11 34455556666665554

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.29  E-value=6.9e-07  Score=68.73  Aligned_cols=80  Identities=26%  Similarity=0.309  Sum_probs=62.8

Q ss_pred             CCCccceecccccccccCc--hhHHHHHhcCCCccEEEccCCccCcccccchh-hhhcCCCCCceEEecCCcCCCCcc--
Q 038163          120 HSKSLEHLDMEFMRIALNT--SFLQIISESMSSLKYLSLSYYTLGINSSETLN-QGLCSLVHLQELYIASNDLRGSLP--  194 (207)
Q Consensus       120 ~~~~L~~L~l~~~~n~~~~--~~~~~l~~~~~~L~~L~l~~n~~~~~~~i~~~-~~~~~~~~L~~L~l~~n~l~~~~p--  194 (207)
                      .++.|+.|+|+  +|.+++  .++..+. .+++|+.|+|++|.++   .+ .. ..+..+ +|++|++++|.+.+.+|  
T Consensus       168 ~l~~L~~L~Ls--~N~l~~l~~l~~~~~-~l~~L~~L~Ls~N~i~---~~-~~l~~l~~l-~L~~L~L~~Npl~~~~~~~  239 (267)
T 3rw6_A          168 NIPELLSLNLS--NNRLYRLDDMSSIVQ-KAPNLKILNLSGNELK---SE-RELDKIKGL-KLEELWLDGNSLCDTFRDQ  239 (267)
T ss_dssp             HCTTCCEEECT--TSCCCCCGGGTTHHH-HSTTCCEEECTTSCCC---SG-GGGGGGTTS-CCSEEECTTSTTGGGCSSH
T ss_pred             hCCCCCEEECC--CCCCCCCccchhHHh-hCCCCCEEECCCCccC---Cc-hhhhhcccC-CcceEEccCCcCccccCcc
Confidence            46789999999  999986  4456677 8999999999999998   33 11 134444 89999999999987555  


Q ss_pred             -----ccccCCCCCccCC
Q 038163          195 -----WCMANMTSLRILD  207 (207)
Q Consensus       195 -----~~~~~l~~L~~l~  207 (207)
                           ..+..+++|+.||
T Consensus       240 ~~y~~~il~~~P~L~~LD  257 (267)
T 3rw6_A          240 STYISAIRERFPKLLRLD  257 (267)
T ss_dssp             HHHHHHHHHHCTTCCEES
T ss_pred             hhHHHHHHHHCcccCeEC
Confidence                 3467889998876

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.27  E-value=3.7e-06  Score=67.58  Aligned_cols=156  Identities=15%  Similarity=0.151  Sum_probs=92.1

Q ss_pred             ccccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhccc--CCCCccEEEcCCC--C-CCh-
Q 038163           13 QGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELH--NFTNMEYLKLDDS--P-LHI-   86 (207)
Q Consensus        13 ~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~--~l~~L~~L~l~~~--~-~~~-   86 (207)
                      .++..+++|++|+++++.-   ..++. + .+++|+.|++..+.++....   ..+.  .+++|++|+|+.+  . ... 
T Consensus       166 ~ll~~~P~L~~L~L~g~~~---l~l~~-~-~~~~L~~L~L~~~~l~~~~l---~~l~~~~lp~L~~L~L~~~~~~~~~~~  237 (362)
T 2ra8_A          166 PVLDAMPLLNNLKIKGTNN---LSIGK-K-PRPNLKSLEIISGGLPDSVV---EDILGSDLPNLEKLVLYVGVEDYGFDG  237 (362)
T ss_dssp             HHHHTCTTCCEEEEECCBT---CBCCS-C-BCTTCSEEEEECSBCCHHHH---HHHHHSBCTTCCEEEEECBCGGGTCCS
T ss_pred             HHHhcCCCCcEEEEeCCCC---ceecc-c-cCCCCcEEEEecCCCChHHH---HHHHHccCCCCcEEEEeccccccccch
Confidence            3456778899999987732   22333 3 37888888888887765433   3333  6788888887531  1 110 


Q ss_pred             ---HHHHh-----hcccccc--cCCcccceeccccccccCCCCCCCccceecccccccccCchhHHHHH---hcCCCccE
Q 038163           87 ---SLLQS-----IASIFPL--LKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFLQIIS---ESMSSLKY  153 (207)
Q Consensus        87 ---~~~~~-----l~~l~~L--~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~~~~~l~---~~~~~L~~  153 (207)
                         .+...     +.+|+.|  ..|.+....+..    +.....+++|++|+++  .|.+++..+..+.   ..+++|+.
T Consensus       238 ~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~----la~a~~~~~L~~LdLs--~n~L~d~G~~~L~~~L~~l~~L~~  311 (362)
T 2ra8_A          238 DMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEM----FLESDILPQLETMDIS--AGVLTDEGARLLLDHVDKIKHLKF  311 (362)
T ss_dssp             CGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHH----HHHCSSGGGCSEEECC--SSCCBHHHHHHHHTTHHHHTTCSE
T ss_pred             hHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHH----HHhCccCCCCCEEECC--CCCCChHHHHHHHhhcccCCcceE
Confidence               01111     1233333  445544321110    0012357899999999  9999876554443   15689999


Q ss_pred             EEccCCccCcccccchhhhhcC-CCCCceEEecCCc
Q 038163          154 LSLSYYTLGINSSETLNQGLCS-LVHLQELYIASND  188 (207)
Q Consensus       154 L~l~~n~~~~~~~i~~~~~~~~-~~~L~~L~l~~n~  188 (207)
                      |++++|.++  +.. .. .+.. +  -..++++.++
T Consensus       312 L~L~~n~i~--d~~-~~-~l~~al--g~~~~~~~~~  341 (362)
T 2ra8_A          312 INMKYNYLS--DEM-KK-ELQKSL--PMKIDVSDSQ  341 (362)
T ss_dssp             EECCSBBCC--HHH-HH-HHHHHC--CSEEECCSBC
T ss_pred             EECCCCcCC--HHH-HH-HHHHHc--CCEEEecCCc
Confidence            999999987  332 22 3332 2  3568888887

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.24  E-value=2.2e-06  Score=65.88  Aligned_cols=68  Identities=22%  Similarity=0.258  Sum_probs=49.3

Q ss_pred             cCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcCCCCCCh
Q 038163           16 NGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDDSPLHI   86 (207)
Q Consensus        16 ~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~   86 (207)
                      ..+++|++|+|++|.+++...++..+..+++|+.|+|++|.+++...  +..+..+ +|++|++++|.+.+
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~--l~~l~~l-~L~~L~L~~Npl~~  234 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERE--LDKIKGL-KLEELWLDGNSLCD  234 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGG--GGGGTTS-CCSEEECTTSTTGG
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchh--hhhcccC-CcceEEccCCcCcc
Confidence            45778888888888884333566777788888888888888886521  1334444 88888888888864

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.84  E-value=2.7e-05  Score=57.02  Aligned_cols=128  Identities=14%  Similarity=0.104  Sum_probs=79.4

Q ss_pred             chhhhcCCCCCCEEEcCCC-cCCccccc-chhcccCCCCccEEEcCCCCCChHHHHhhcccccccCCcccceeccccccc
Q 038163           37 LLQSIGSFSSLNSLYLSSN-NFTETVTI-TTQELHNFTNMEYLKLDDSPLHISLLQSIASIFPLLKNLSMIGCEVNGVIR  114 (207)
Q Consensus        37 ~~~~~~~l~~L~~L~l~~n-~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~n~~~~~~~~~~~~~  114 (207)
                      +...+..-+.|+.|+|+++ .+...... -...+..-..|++|+|++|.+.+.....+.               .     
T Consensus        33 l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA---------------~-----   92 (197)
T 1pgv_A           33 INRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLI---------------E-----   92 (197)
T ss_dssp             HHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHH---------------H-----
T ss_pred             HHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHH---------------H-----
Confidence            3344455678888888875 66643210 014555667888888888888866554332               1     


Q ss_pred             cCCCCCCCccceecccccccccCchhHHHHHhcC---CCccEEEccCC---ccCccc--ccchhhhhcCCCCCceEEecC
Q 038163          115 GQDFPHSKSLEHLDMEFMRIALNTSFLQIISESM---SSLKYLSLSYY---TLGINS--SETLNQGLCSLVHLQELYIAS  186 (207)
Q Consensus       115 ~~~~~~~~~L~~L~l~~~~n~~~~~~~~~l~~~~---~~L~~L~l~~n---~~~~~~--~i~~~~~~~~~~~L~~L~l~~  186 (207)
                        .+..-..|+.|+|+  +|.+++.....+.+.+   +.|++|++++|   .+...+  .+ .. .+..-+.|+.|+++.
T Consensus        93 --aL~~N~tL~~L~L~--~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~i-a~-aL~~N~tL~~L~l~~  166 (197)
T 1pgv_A           93 --LIETSPSLRVLNVE--SNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDM-MM-AIEENESLLRVGISF  166 (197)
T ss_dssp             --HHHHCSSCCEEECC--SSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHH-HH-HHHHCSSCCEEECCC
T ss_pred             --HHhcCCccCeEecC--CCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHH-HH-HHHhCCCcCeEeccC
Confidence              33344678888888  8888866655444233   46888888765   344111  13 33 566677888888877


Q ss_pred             CcCC
Q 038163          187 NDLR  190 (207)
Q Consensus       187 n~l~  190 (207)
                      |.+.
T Consensus       167 ~~~g  170 (197)
T 1pgv_A          167 ASME  170 (197)
T ss_dssp             CCHH
T ss_pred             CCcc
Confidence            6543

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=97.84  E-value=8.7e-05  Score=60.01  Aligned_cols=166  Identities=10%  Similarity=0.066  Sum_probs=97.3

Q ss_pred             cCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcCCCCCChHHHHhhccc
Q 038163           16 NGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDDSPLHISLLQSIASI   95 (207)
Q Consensus        16 ~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l   95 (207)
                      .....++.+.+.....   ......+..+..++.+.+..+... ...   ..+..+..++.+......+....-.....+
T Consensus       227 ~~~~~l~~i~ip~~~~---~i~~~~f~~~~~l~~~~~~~~~~~-i~~---~~F~~~~~l~~~~~~~~~i~~~~F~~~~~L  299 (394)
T 4fs7_A          227 LSKTGVKNIIIPDSFT---ELGKSVFYGCTDLESISIQNNKLR-IGG---SLFYNCSGLKKVIYGSVIVPEKTFYGCSSL  299 (394)
T ss_dssp             TTTCCCCEEEECTTCC---EECSSTTTTCSSCCEEEECCTTCE-ECS---CTTTTCTTCCEEEECSSEECTTTTTTCTTC
T ss_pred             cccCCCceEEECCCce---ecccccccccccceeEEcCCCcce-eec---cccccccccceeccCceeeccccccccccc
Confidence            3345666666654322   222335566777777777655322 222   345556666666555443322111111222


Q ss_pred             ccc-cCCcccceeccccccccCCCCCCCccceecccccccccCchhHHHHHhcCCCccEEEccCCccCcccccchhhhhc
Q 038163           96 FPL-LKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSLSYYTLGINSSETLNQGLC  174 (207)
Q Consensus        96 ~~L-~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L~l~~n~~~~~~~i~~~~~~~  174 (207)
                      ..+ -.+.+. .++..      .|..|.+|+.+++.  .+ ++.....++. .|.+|+.+.+..+ +.   .| ...+|.
T Consensus       300 ~~i~l~~~i~-~I~~~------aF~~c~~L~~i~lp--~~-v~~I~~~aF~-~c~~L~~i~lp~~-l~---~I-~~~aF~  363 (394)
T 4fs7_A          300 TEVKLLDSVK-FIGEE------AFESCTSLVSIDLP--YL-VEEIGKRSFR-GCTSLSNINFPLS-LR---KI-GANAFQ  363 (394)
T ss_dssp             CEEEECTTCC-EECTT------TTTTCTTCCEECCC--TT-CCEECTTTTT-TCTTCCEECCCTT-CC---EE-CTTTBT
T ss_pred             cccccccccc-eechh------hhcCCCCCCEEEeC--Cc-ccEEhHHhcc-CCCCCCEEEECcc-cc---Ee-hHHHhh
Confidence            222 111121 12222      78889999999986  54 4433345666 8899999999766 65   66 555899


Q ss_pred             CCCCCceEEecCCcCCCCccccccCCCCCccC
Q 038163          175 SLVHLQELYIASNDLRGSLPWCMANMTSLRIL  206 (207)
Q Consensus       175 ~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l  206 (207)
                      +|.+|+.+++..+--  .+...|.++++|+.+
T Consensus       364 ~C~~L~~i~lp~~~~--~~~~~F~~c~~L~~I  393 (394)
T 4fs7_A          364 GCINLKKVELPKRLE--QYRYDFEDTTKFKWI  393 (394)
T ss_dssp             TCTTCCEEEEEGGGG--GGGGGBCTTCEEEEE
T ss_pred             CCCCCCEEEECCCCE--EhhheecCCCCCcEE
Confidence            999999999986642  345778899988754

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.74  E-value=9.5e-05  Score=54.09  Aligned_cols=123  Identities=12%  Similarity=0.214  Sum_probs=87.3

Q ss_pred             ccCCCCCcEEecCCC-cccCC--CcchhhhcCCCCCCEEEcCCCcCCcccccc-hhcccCCCCccEEEcCCCCCChHHHH
Q 038163           15 YNGLRKLKSLDLSGV-GVRDG--SKLLQSIGSFSSLNSLYLSSNNFTETVTIT-TQELHNFTNMEYLKLDDSPLHISLLQ   90 (207)
Q Consensus        15 ~~~l~~L~~L~ls~n-~i~~~--~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~   90 (207)
                      +..-+.|++|+++++ .|.+.  ..+-+.+..-+.|+.|+|++|.+.+..... ...+..-+.|++|+|++|.+......
T Consensus        37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~  116 (197)
T 1pgv_A           37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA  116 (197)
T ss_dssp             HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred             HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence            355678999999986 88211  125566677889999999999998654311 03444668899999999999977665


Q ss_pred             hhcccccccCCcccceeccccccccCCCCCCCccceeccccccc---ccCch----hHHHHHhcCCCccEEEccCCccC
Q 038163           91 SIASIFPLLKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRI---ALNTS----FLQIISESMSSLKYLSLSYYTLG  162 (207)
Q Consensus        91 ~l~~l~~L~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n---~~~~~----~~~~l~~~~~~L~~L~l~~n~~~  162 (207)
                      .+.               .       .+..-..|+.|+++  ++   .+...    +.+.+. .-+.|+.|+++.+.+.
T Consensus       117 ala---------------~-------aL~~N~tL~~L~L~--n~~~~~ig~~g~~~ia~aL~-~N~tL~~L~l~~~~~g  170 (197)
T 1pgv_A          117 RLL---------------R-------STLVTQSIVEFKAD--NQRQSVLGNQVEMDMMMAIE-ENESLLRVGISFASME  170 (197)
T ss_dssp             HHH---------------H-------HTTTTCCCSEEECC--CCSSCCCCHHHHHHHHHHHH-HCSSCCEEECCCCCHH
T ss_pred             HHH---------------H-------HHhhCCceeEEECC--CCcCcCcCHHHHHHHHHHHH-hCCCcCeEeccCCCcc
Confidence            443               2       55566779999997  65   44543    345555 6678999999877664

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=97.66  E-value=0.00012  Score=59.23  Aligned_cols=178  Identities=13%  Similarity=0.089  Sum_probs=99.0

Q ss_pred             eecCccccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcc-------------cccc-----hhcccC
Q 038163            9 LVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTET-------------VTIT-----TQELHN   70 (207)
Q Consensus         9 ~~p~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~-------------~~~~-----~~~l~~   70 (207)
                      .++..+|.++.+|+.+++..+ +  .......+.++..|+.+.+..+...-.             +|..     ...+..
T Consensus       175 ~I~~~~F~~c~~L~~i~l~~~-~--~~I~~~~F~~~~~L~~i~~~~~~~~i~~~~~~~~~l~~i~ip~~~~~i~~~~f~~  251 (394)
T 4fs7_A          175 TLHNGLFSGCGKLKSIKLPRN-L--KIIRDYCFAECILLENMEFPNSLYYLGDFALSKTGVKNIIIPDSFTELGKSVFYG  251 (394)
T ss_dssp             EECTTTTTTCTTCCBCCCCTT-C--CEECTTTTTTCTTCCBCCCCTTCCEECTTTTTTCCCCEEEECTTCCEECSSTTTT
T ss_pred             eeccccccCCCCceEEEcCCC-c--eEeCchhhccccccceeecCCCceEeehhhcccCCCceEEECCCceecccccccc
Confidence            467777888888988888765 3  122233556666666665544321100             0000     022334


Q ss_pred             CCCccEEEcCCCCCChHHHHhhcccccccCCcc-cceeccccccccCCCCCCCccceecccccccccCchhHHHHHhcCC
Q 038163           71 FTNMEYLKLDDSPLHISLLQSIASIFPLLKNLS-MIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFLQIISESMS  149 (207)
Q Consensus        71 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~n~~-~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~  149 (207)
                      +..++.+.+..+... .....+..+..+..-.. ...++.      ..+..+.+|+.+.+.  .+ ++.....++. .|.
T Consensus       252 ~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~~------~~F~~~~~L~~i~l~--~~-i~~I~~~aF~-~c~  320 (394)
T 4fs7_A          252 CTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVPE------KTFYGCSSLTEVKLL--DS-VKFIGEEAFE-SCT  320 (394)
T ss_dssp             CSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEECT------TTTTTCTTCCEEEEC--TT-CCEECTTTTT-TCT
T ss_pred             cccceeEEcCCCcce-eeccccccccccceeccCceeecc------ccccccccccccccc--cc-cceechhhhc-CCC
Confidence            445555555443321 11111111111100000 001222      167778888888876  44 3323345566 789


Q ss_pred             CccEEEccCCccCcccccchhhhhcCCCCCceEEecCCcCCCCccccccCCCCCccC
Q 038163          150 SLKYLSLSYYTLGINSSETLNQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRIL  206 (207)
Q Consensus       150 ~L~~L~l~~n~~~~~~~i~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l  206 (207)
                      +|+.+.+..+ +.   .| ...+|.+|.+|+.+.+..+ +.......|..|++|+.+
T Consensus       321 ~L~~i~lp~~-v~---~I-~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i  371 (394)
T 4fs7_A          321 SLVSIDLPYL-VE---EI-GKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKV  371 (394)
T ss_dssp             TCCEECCCTT-CC---EE-CTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEE
T ss_pred             CCCEEEeCCc-cc---EE-hHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEE
Confidence            9999999644 65   66 5558999999999999877 554445789999999865

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=97.65  E-value=0.00035  Score=55.99  Aligned_cols=77  Identities=10%  Similarity=0.013  Sum_probs=48.6

Q ss_pred             CCCCCCccceecccccccccCchhHHHHHhcCCCccEEEccCCccCcccccchhhhhcCCCCCceEEecCCcCCCCcccc
Q 038163          117 DFPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSLSYYTLGINSSETLNQGLCSLVHLQELYIASNDLRGSLPWC  196 (207)
Q Consensus       117 ~~~~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L~l~~n~~~~~~~i~~~~~~~~~~~L~~L~l~~n~l~~~~p~~  196 (207)
                      .|..|.+|+.+.+.  .+.++......+. .|.+|+.+.+..+ ++   .| ...+|.+|.+|+.+.+..+ +.......
T Consensus       281 aF~~c~~L~~i~l~--~~~i~~I~~~aF~-~c~~L~~i~lp~~-l~---~I-~~~aF~~C~~L~~i~ip~~-v~~I~~~a  351 (379)
T 4h09_A          281 LCSGCSNLTKVVMD--NSAIETLEPRVFM-DCVKLSSVTLPTA-LK---TI-QVYAFKNCKALSTISYPKS-ITLIESGA  351 (379)
T ss_dssp             TTTTCTTCCEEEEC--CTTCCEECTTTTT-TCTTCCEEECCTT-CC---EE-CTTTTTTCTTCCCCCCCTT-CCEECTTT
T ss_pred             cccccccccccccc--ccccceehhhhhc-CCCCCCEEEcCcc-cc---EE-HHHHhhCCCCCCEEEECCc-cCEEchhH
Confidence            67778888888877  6666533345556 7788888888543 54   55 4447778888888777554 32222345


Q ss_pred             ccCCCC
Q 038163          197 MANMTS  202 (207)
Q Consensus       197 ~~~l~~  202 (207)
                      |..++.
T Consensus       352 F~~c~~  357 (379)
T 4h09_A          352 FEGSSI  357 (379)
T ss_dssp             TTTSSC
T ss_pred             hhCCCC
Confidence            555543

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=97.47  E-value=0.00067  Score=54.74  Aligned_cols=125  Identities=10%  Similarity=0.118  Sum_probs=71.0

Q ss_pred             hhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcCCCCCChHHHHhhcccccccCCcccceeccccccccCC
Q 038163           38 LQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDDSPLHISLLQSIASIFPLLKNLSMIGCEVNGVIRGQD  117 (207)
Q Consensus        38 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~n~~~~~~~~~~~~~~~~  117 (207)
                      ...|.++..|+.+.+..+.. ....   ..+..+..|+.+.+... +.                    .++..      .
T Consensus       258 ~~aF~~c~~L~~i~lp~~~~-~I~~---~aF~~c~~L~~i~l~~~-i~--------------------~I~~~------a  306 (394)
T 4gt6_A          258 THAFDSCAYLASVKMPDSVV-SIGT---GAFMNCPALQDIEFSSR-IT--------------------ELPES------V  306 (394)
T ss_dssp             TTTTTTCSSCCEEECCTTCC-EECT---TTTTTCTTCCEEECCTT-CC--------------------EECTT------T
T ss_pred             cceeeecccccEEecccccc-eecC---cccccccccccccCCCc-cc--------------------ccCce------e
Confidence            34566777787777755432 2222   45667777777777532 22                    12222      6


Q ss_pred             CCCCCccceecccccccccCchhHHHHHhcCCCccEEEccCCccCcccccchhhhhcCCCCCceEEecCCcCCCCccccc
Q 038163          118 FPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSLSYYTLGINSSETLNQGLCSLVHLQELYIASNDLRGSLPWCM  197 (207)
Q Consensus       118 ~~~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L~l~~n~~~~~~~i~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~  197 (207)
                      |..|.+|+.+.+.  .+ ++.....++. .|.+|+.+.+..+ ++   .| ...+|.+|.+|+.+++.++...   ...+
T Consensus       307 F~~c~~L~~i~lp--~~-v~~I~~~aF~-~C~~L~~i~ip~s-v~---~I-~~~aF~~C~~L~~i~~~~~~~~---~~~~  374 (394)
T 4gt6_A          307 FAGCISLKSIDIP--EG-ITQILDDAFA-GCEQLERIAIPSS-VT---KI-PESAFSNCTALNNIEYSGSRSQ---WNAI  374 (394)
T ss_dssp             TTTCTTCCEEECC--TT-CCEECTTTTT-TCTTCCEEEECTT-CC---BC-CGGGGTTCTTCCEEEESSCHHH---HHTC
T ss_pred             ecCCCCcCEEEeC--Cc-ccEehHhHhh-CCCCCCEEEECcc-cC---EE-hHhHhhCCCCCCEEEECCceee---hhhh
Confidence            6777777777775  43 3322234455 6777777777543 54   55 4447777778887777776543   1334


Q ss_pred             cCCCCCcc
Q 038163          198 ANMTSLRI  205 (207)
Q Consensus       198 ~~l~~L~~  205 (207)
                      ..+.+|+.
T Consensus       375 ~~~~~L~~  382 (394)
T 4gt6_A          375 STDSGLQN  382 (394)
T ss_dssp             BCCCCC--
T ss_pred             hccCCCCE
Confidence            44445443

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=97.32  E-value=0.0024  Score=51.09  Aligned_cols=81  Identities=14%  Similarity=0.168  Sum_probs=60.9

Q ss_pred             CCCCCCccceecccccccccCchhHHHHHhcCCCccEEEccCCccCcccccchhhhhcCCCCCceEEecCCcCCCCcccc
Q 038163          117 DFPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSLSYYTLGINSSETLNQGLCSLVHLQELYIASNDLRGSLPWC  196 (207)
Q Consensus       117 ~~~~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L~l~~n~~~~~~~i~~~~~~~~~~~L~~L~l~~n~l~~~~p~~  196 (207)
                      .+..+..|+.+.+.  .+ +.......+. .|.+|+.+.+..+.+.   .| ....|.+|.+|+.+.+..+ +.......
T Consensus       258 aF~~~~~l~~i~l~--~~-i~~i~~~aF~-~c~~L~~i~l~~~~i~---~I-~~~aF~~c~~L~~i~lp~~-l~~I~~~a  328 (379)
T 4h09_A          258 LLQNCTALKTLNFY--AK-VKTVPYLLCS-GCSNLTKVVMDNSAIE---TL-EPRVFMDCVKLSSVTLPTA-LKTIQVYA  328 (379)
T ss_dssp             TTTTCTTCCEEEEC--CC-CSEECTTTTT-TCTTCCEEEECCTTCC---EE-CTTTTTTCTTCCEEECCTT-CCEECTTT
T ss_pred             ccceeehhcccccc--cc-ceeccccccc-cccccccccccccccc---ee-hhhhhcCCCCCCEEEcCcc-ccEEHHHH
Confidence            67788888888876  43 3322334556 8899999999988887   77 5558999999999999765 44333478


Q ss_pred             ccCCCCCccC
Q 038163          197 MANMTSLRIL  206 (207)
Q Consensus       197 ~~~l~~L~~l  206 (207)
                      |..|++|+.+
T Consensus       329 F~~C~~L~~i  338 (379)
T 4h09_A          329 FKNCKALSTI  338 (379)
T ss_dssp             TTTCTTCCCC
T ss_pred             hhCCCCCCEE
Confidence            9999998875

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=97.09  E-value=0.0033  Score=50.69  Aligned_cols=79  Identities=15%  Similarity=0.201  Sum_probs=37.5

Q ss_pred             CCCCCCccceecccccccccCchhHHHHHhcCCCccEEEccCCccCcccccchhhhhcCCCCCceEEecCCcCCCCcccc
Q 038163          117 DFPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSLSYYTLGINSSETLNQGLCSLVHLQELYIASNDLRGSLPWC  196 (207)
Q Consensus       117 ~~~~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L~l~~n~~~~~~~i~~~~~~~~~~~L~~L~l~~n~l~~~~p~~  196 (207)
                      .+..+..|+.+.+.  .. ++......+. .|.+|+.+.+..+ ++   .| ...+|.+|.+|+.+.+-.+ +.......
T Consensus       283 aF~~c~~L~~i~l~--~~-i~~I~~~aF~-~c~~L~~i~lp~~-v~---~I-~~~aF~~C~~L~~i~ip~s-v~~I~~~a  352 (394)
T 4gt6_A          283 AFMNCPALQDIEFS--SR-ITELPESVFA-GCISLKSIDIPEG-IT---QI-LDDAFAGCEQLERIAIPSS-VTKIPESA  352 (394)
T ss_dssp             TTTTCTTCCEEECC--TT-CCEECTTTTT-TCTTCCEEECCTT-CC---EE-CTTTTTTCTTCCEEEECTT-CCBCCGGG
T ss_pred             ccccccccccccCC--Cc-ccccCceeec-CCCCcCEEEeCCc-cc---Ee-hHhHhhCCCCCCEEEECcc-cCEEhHhH
Confidence            45555555555553  21 2211123333 5556666665432 33   44 3335556666666666433 33222355


Q ss_pred             ccCCCCCcc
Q 038163          197 MANMTSLRI  205 (207)
Q Consensus       197 ~~~l~~L~~  205 (207)
                      |..|++|+.
T Consensus       353 F~~C~~L~~  361 (394)
T 4gt6_A          353 FSNCTALNN  361 (394)
T ss_dssp             GTTCTTCCE
T ss_pred             hhCCCCCCE
Confidence            566665554

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.90  E-value=0.0018  Score=43.96  Aligned_cols=57  Identities=19%  Similarity=0.253  Sum_probs=44.3

Q ss_pred             cEEecCCCcccCC-CcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcCCCCCC
Q 038163           22 KSLDLSGVGVRDG-SKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDDSPLH   85 (207)
Q Consensus        22 ~~L~ls~n~i~~~-~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~   85 (207)
                      .+++.+++.+  + ..+|..+.  ++|++|+|++|.++...+   ..+..+++|++|+|.+|.+.
T Consensus        11 ~~v~Cs~~~L--~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~---~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           11 TLVDCGRRGL--TWASLPTAFP--VDTTELVLTGNNLTALPP---GLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             TEEECCSSCC--CTTTSCSCCC--TTCSEEECTTSCCSSCCT---TTGGGCTTCCEEECCSSCCB
T ss_pred             CEEEeCCCCC--ccccCCCCCC--cCCCEEECCCCcCCccCh---hhhhhccccCEEEecCCCee
Confidence            4788888888  2 16665332  469999999999998766   67778889999999999875

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.17  E-value=0.01  Score=40.17  Aligned_cols=52  Identities=12%  Similarity=0.083  Sum_probs=37.4

Q ss_pred             CCCccC-ceecCccccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCC
Q 038163            2 SFNEIN-NLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFT   58 (207)
Q Consensus         2 ~~n~~~-~~~p~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~   58 (207)
                      +++.++ ..+|...   -.++++|+|++|.|  ...-+..|..+++|+.|+|.+|.+.
T Consensus        16 s~~~L~~~~vP~~l---p~~l~~L~Ls~N~l--~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           16 GRRGLTWASLPTAF---PVDTTELVLTGNNL--TALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             CSSCCCTTTSCSCC---CTTCSEEECTTSCC--SSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             CCCCCccccCCCCC---CcCCCEEECCCCcC--CccChhhhhhccccCEEEecCCCee
Confidence            344554 2466432   24689999999999  4444557788999999999999765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	207
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-06
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	0.002
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	3e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.001
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.003
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.004

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 45.4 bits (106), Expect = 2e-06
 Identities = 40/201 (19%), Positives = 76/201 (37%), Gaps = 28/201 (13%)

Query: 7   NNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQ 66
           N +        L  L  L L+G  ++D    + ++ S ++L  L L++N  +        
Sbjct: 207 NQISDITPLGILTNLDELSLNGNQLKD----IGTLASLTNLTDLDLANNQISNLA----- 257

Query: 67  ELHNFTNMEYLKLDDSPLHISLLQSIASIFPLLKNLSMIGCEVNGVIRGQDFPHSKSLEH 126
            L   T +  LKL  + +         S    L  L+ +    N +       + K+L +
Sbjct: 258 PLSGLTKLTELKLGANQISNI------SPLAGLTALTNLELNENQLEDISPISNLKNLTY 311

Query: 127 LDMEFMRIALNTSFLQIISESMSSLKYLSLSYYTLGINSSETLNQGLCSLVHLQELYIAS 186
           L + F  I+  +        S++ L+ L  +   +   SS      L +L ++  L    
Sbjct: 312 LTLYFNNISDISPV-----SSLTKLQRLFFANNKVSDVSS------LANLTNINWLSAGH 360

Query: 187 NDLRGSLPWCMANMTSLRILD 207
           N +    P  +AN+T +  L 
Sbjct: 361 NQISDLTP--LANLTRITQLG 379

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 36.1 bits (82), Expect = 0.002
 Identities = 18/75 (24%), Positives = 32/75 (42%), Gaps = 9/75 (12%)

Query: 7   NNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQ 66
           NN+      + L KL+ L  +   V D    + S+ + +++N L    N  ++       
Sbjct: 317 NNISDISPVSSLTKLQRLFFANNKVSD----VSSLANLTNINWLSAGHNQISDLT----- 367

Query: 67  ELHNFTNMEYLKLDD 81
            L N T +  L L+D
Sbjct: 368 PLANLTRITQLGLND 382

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.1 bits (87), Expect = 3e-04
 Identities = 27/190 (14%), Positives = 61/190 (32%), Gaps = 6/190 (3%)

Query: 18  LRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYL 77
           L  + +L   G GV      ++ +   ++L  L L  N  T+   +          +   
Sbjct: 40  LDGITTLSAFGTGVTT----IEGVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGN 95

Query: 78  KLDDSPLHISLLQSIASIFPLLKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALN 137
            L +      L           +   +        ++      ++      +  +     
Sbjct: 96  PLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQY 155

Query: 138 TSFLQIISESMSSLKYLSLSYYTLGINSSETLNQGLCSLVHLQELYIASNDLRGSLPWCM 197
            S        ++ L  LS        ++  +    L SL +L E+++ +N +    P  +
Sbjct: 156 LSIGNAQVSDLTPLANLSKLTTLKADDNKISDISPLASLPNLIEVHLKNNQISDVSP--L 213

Query: 198 ANMTSLRILD 207
           AN ++L I+ 
Sbjct: 214 ANTSNLFIVT 223

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.9 bits (83), Expect = 0.001
 Identities = 11/83 (13%), Positives = 30/83 (36%), Gaps = 4/83 (4%)

Query: 1  MSFNEINNLVVPQGYNGLRKLKSLDLSGVGVRD--GSKLLQSIGSFSSLNSLYLSSNNFT 58
          +   E+++    +    L++ + + L   G+ +     +  ++    +L  L L SN   
Sbjct: 9  IQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELG 68

Query: 59 ET--VTITTQELHNFTNMEYLKL 79
          +     +          ++ L L
Sbjct: 69 DVGVHCVLQGLQTPSCKIQKLSL 91

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.7 bits (80), Expect = 0.003
 Identities = 14/92 (15%), Positives = 33/92 (35%), Gaps = 7/92 (7%)

Query: 121 SKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSLSYYTLGINSSETLNQGLCSLVHLQ 180
           S  ++ LD++   +  + +    +   +   + + L    L     + ++  L     L 
Sbjct: 1   SLDIQSLDIQCEEL--SDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALA 58

Query: 181 ELYIASNDLRGSLPWCMA-----NMTSLRILD 207
           EL + SN+L      C+          ++ L 
Sbjct: 59  ELNLRSNELGDVGVHCVLQGLQTPSCKIQKLS 90

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.0 bits (78), Expect = 0.004
 Identities = 19/109 (17%), Positives = 37/109 (33%), Gaps = 4/109 (3%)

Query: 1   MSFNEINNLVVPQGYNGLRKLKSLDLSGVGVRD--GSKLLQSIGSFSSLNSLYLSSNNFT 58
              +     +          L+ L L+   V D   S L  ++ +  SL  L LS+N   
Sbjct: 351 RLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG 410

Query: 59  ET--VTITTQELHNFTNMEYLKLDDSPLHISLLQSIASIFPLLKNLSMI 105
           +   + +          +E L L D      +   + ++     +L +I
Sbjct: 411 DAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVI 459

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	207
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.85
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.83
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.82
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.81
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.8
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.72
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.71
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.69
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.69
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.67
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.67
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.63
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.63
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.61
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.61
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.57
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.56
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.54
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.5
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.48
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.47
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.47
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.46
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.45
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.42
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.4
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.33
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.23
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.19
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.05
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.04
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.89
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.8
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.79
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.61
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.59
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.44
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.18
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.09
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.03
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.86
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.83

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.85  E-value=2.9e-22  Score=156.74  Aligned_cols=193  Identities=17%  Similarity=0.202  Sum_probs=125.7

Q ss_pred             CCCccCc--eecCccccCCCCCcEEecCC-CcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccc--------------
Q 038163            2 SFNEINN--LVVPQGYNGLRKLKSLDLSG-VGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTIT--------------   64 (207)
Q Consensus         2 ~~n~~~~--~~p~~~~~~l~~L~~L~ls~-n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~--------------   64 (207)
                      ++|.+.|  .+|+ .++++++|++|++++ |.+  .+.+|..|+++++|++|++++|.+.+..+..              
T Consensus        58 ~~~~l~g~~~lp~-~l~~L~~L~~L~Ls~~N~l--~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~  134 (313)
T d1ogqa_          58 SGLNLPKPYPIPS-SLANLPYLNFLYIGGINNL--VGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSY  134 (313)
T ss_dssp             ECCCCSSCEECCG-GGGGCTTCSEEEEEEETTE--ESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCS
T ss_pred             CCCCCCCCCCCCh-HHhcCcccccccccccccc--ccccccccccccccchhhhccccccccccccccchhhhccccccc
Confidence            4566666  3554 467788888888875 667  4567777888888888888877776654410              


Q ss_pred             -------hhcccCCCCccEEEcCCCCCChHHHHhhcccccc------cCCcccceeccc-c-----cccc----------
Q 038163           65 -------TQELHNFTNMEYLKLDDSPLHISLLQSIASIFPL------LKNLSMIGCEVN-G-----VIRG----------  115 (207)
Q Consensus        65 -------~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L------~~n~~~~~~~~~-~-----~~~~----------  115 (207)
                             ...+..++.++++++++|.+.+..+..+..+..+      .+|.+++..+.. .     ..++          
T Consensus       135 N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~~l~l~~~~~~~~~~  214 (313)
T d1ogqa_         135 NALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDAS  214 (313)
T ss_dssp             SEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCG
T ss_pred             ccccccCchhhccCcccceeeccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence                   0234444555555555555544444444333332      334443322211 0     0000          


Q ss_pred             CCCCCCCccceecccccccccCchhHHHHHhcCCCccEEEccCCccCcccccchhhhhcCCCCCceEEecCCcCCCCccc
Q 038163          116 QDFPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSLSYYTLGINSSETLNQGLCSLVHLQELYIASNDLRGSLPW  195 (207)
Q Consensus       116 ~~~~~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L~l~~n~~~~~~~i~~~~~~~~~~~L~~L~l~~n~l~~~~p~  195 (207)
                      ..+..++.++.+++.  +|.+.+..+ .+. .+++++.|++++|.++  +.+ |. .++.+++|+.|++++|++.|.+|.
T Consensus       215 ~~~~~~~~l~~l~~~--~~~l~~~~~-~~~-~~~~L~~L~Ls~N~l~--g~i-P~-~l~~L~~L~~L~Ls~N~l~g~iP~  286 (313)
T d1ogqa_         215 VLFGSDKNTQKIHLA--KNSLAFDLG-KVG-LSKNLNGLDLRNNRIY--GTL-PQ-GLTQLKFLHSLNVSFNNLCGEIPQ  286 (313)
T ss_dssp             GGCCTTSCCSEEECC--SSEECCBGG-GCC-CCTTCCEEECCSSCCE--ECC-CG-GGGGCTTCCEEECCSSEEEEECCC
T ss_pred             ccccccccccccccc--ccccccccc-ccc-cccccccccCccCeec--ccC-Ch-HHhCCCCCCEEECcCCcccccCCC
Confidence            144567788889998  888876554 455 6889999999999998  888 88 899999999999999999988885


Q ss_pred             cccCCCCCccC
Q 038163          196 CMANMTSLRIL  206 (207)
Q Consensus       196 ~~~~l~~L~~l  206 (207)
                       +.++++|+.+
T Consensus       287 -~~~L~~L~~l  296 (313)
T d1ogqa_         287 -GGNLQRFDVS  296 (313)
T ss_dssp             -STTGGGSCGG
T ss_pred             -cccCCCCCHH
Confidence             4666666654

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.83  E-value=1.8e-21  Score=152.21  Aligned_cols=171  Identities=18%  Similarity=0.256  Sum_probs=121.3

Q ss_pred             CCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCC-CcCCcccccchhcccCCCCccEEEcCCCCCChHHHHhhccccc
Q 038163           19 RKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSS-NNFTETVTITTQELHNFTNMEYLKLDDSPLHISLLQSIASIFP   97 (207)
Q Consensus        19 ~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~-n~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~   97 (207)
                      .++++|+++++.++....+|..++++++|++|++++ |.+++.+|   ..+.++++|++|++++|.+.+..+..+..+..
T Consensus        50 ~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP---~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~  126 (313)
T d1ogqa_          50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIP---PAIAKLTQLHYLYITHTNVSGAIPDFLSQIKT  126 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCC---GGGGGCTTCSEEEEEEECCEEECCGGGGGCTT
T ss_pred             EEEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccc---cccccccccchhhhccccccccccccccchhh
Confidence            468899999999943336899999999999999986 78888889   88999999999999999887644444444443


Q ss_pred             c-----cCCcccceeccccccccCCCCCCCccceecccccccccCchhHH------------------------------
Q 038163           98 L-----LKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFLQ------------------------------  142 (207)
Q Consensus        98 L-----~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~~~~------------------------------  142 (207)
                      |     ..|...+.+|.       .+..++.++.++++  +|.+.+.+|.                              
T Consensus       127 L~~l~l~~N~~~~~~p~-------~l~~l~~L~~l~l~--~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l  197 (313)
T d1ogqa_         127 LVTLDFSYNALSGTLPP-------SISSLPNLVGITFD--GNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL  197 (313)
T ss_dssp             CCEEECCSSEEESCCCG-------GGGGCTTCCEEECC--SSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGC
T ss_pred             hcccccccccccccCch-------hhccCcccceeecc--cccccccccccccccccccccccccccccccccccccccc
Confidence            3     44555544444       44444444444444  4444333222                              


Q ss_pred             ------------------HHHhcCCCccEEEccCCccCcccccchhhhhcCCCCCceEEecCCcCCCCccccccCCCCCc
Q 038163          143 ------------------IISESMSSLKYLSLSYYTLGINSSETLNQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLR  204 (207)
Q Consensus       143 ------------------~l~~~~~~L~~L~l~~n~~~~~~~i~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~  204 (207)
                                        ... .++.++.+++++|.+.  +.+  . .+..+++++.|++++|++.+.+|..+.++++|+
T Consensus       198 ~~~~l~l~~~~~~~~~~~~~~-~~~~l~~l~~~~~~l~--~~~--~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~  271 (313)
T d1ogqa_         198 NLAFVDLSRNMLEGDASVLFG-SDKNTQKIHLAKNSLA--FDL--G-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLH  271 (313)
T ss_dssp             CCSEEECCSSEEEECCGGGCC-TTSCCSEEECCSSEEC--CBG--G-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCC
T ss_pred             ccccccccccccccccccccc-cccccccccccccccc--ccc--c-ccccccccccccCccCeecccCChHHhCCCCCC
Confidence                              223 3445556666666665  333  2 577789999999999999999999999999999


Q ss_pred             cCC
Q 038163          205 ILD  207 (207)
Q Consensus       205 ~l~  207 (207)
                      +||
T Consensus       272 ~L~  274 (313)
T d1ogqa_         272 SLN  274 (313)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            875

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=7.3e-20  Score=141.15  Aligned_cols=187  Identities=19%  Similarity=0.169  Sum_probs=129.8

Q ss_pred             CCCCccCceecCccccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcC-CCcCCcccccchhcccCCCCccEEEc
Q 038163            1 MSFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLS-SNNFTETVTITTQELHNFTNMEYLKL   79 (207)
Q Consensus         1 l~~n~~~~~~p~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~-~n~~~~~~~~~~~~l~~l~~L~~L~l   79 (207)
                      |++|+|. .+|+.+|.++++|++|++++|.+  ....+..+..+..++.++.. .+.++...+   ..+..+++|++|++
T Consensus        39 Ls~N~i~-~i~~~~f~~l~~L~~L~ls~n~l--~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~---~~~~~l~~L~~L~l  112 (284)
T d1ozna_          39 LHGNRIS-HVPAASFRACRNLTILWLHSNVL--ARIDAAAFTGLALLEQLDLSDNAQLRSVDP---ATFHGLGRLHTLHL  112 (284)
T ss_dssp             CTTSCCC-EECTTTTTTCTTCCEEECCSSCC--CEECTTTTTTCTTCCEEECCSCTTCCCCCT---TTTTTCTTCCEEEC
T ss_pred             CcCCcCC-CCCHHHhhccccccccccccccc--cccccccccccccccccccccccccccccc---hhhcccccCCEEec
Confidence            4566665 46666666677777777776666  33334444555566665543 334444444   56777888999999


Q ss_pred             CCCCCChHHHHhhcccccc-----cCCcccceeccccccccCCCCCCCccceecccccccccCchhHHHHHhcCCCccEE
Q 038163           80 DDSPLHISLLQSIASIFPL-----LKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYL  154 (207)
Q Consensus        80 ~~~~~~~~~~~~l~~l~~L-----~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L  154 (207)
                      ++|.+.......+....+|     .+|.+++..+.       .+..++.|+.|+++  +|.++...+..+. .+++|+.+
T Consensus       113 ~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~-------~f~~~~~L~~L~l~--~N~l~~l~~~~f~-~l~~L~~l  182 (284)
T d1ozna_         113 DRCGLQELGPGLFRGLAALQYLYLQDNALQALPDD-------TFRDLGNLTHLFLH--GNRISSVPERAFR-GLHSLDRL  182 (284)
T ss_dssp             TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT-------TTTTCTTCCEEECC--SSCCCEECTTTTT-TCTTCCEE
T ss_pred             CCcccccccccccchhcccchhhhccccccccChh-------Hhccccchhhcccc--cCcccccchhhhc-cccccchh
Confidence            8888754333333333333     77777764444       67788889999999  8888765566666 78889999


Q ss_pred             EccCCccCcccccchhhhhcCCCCCceEEecCCcCCCCccccccCCCCCccCC
Q 038163          155 SLSYYTLGINSSETLNQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILD  207 (207)
Q Consensus       155 ~l~~n~~~~~~~i~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~  207 (207)
                      .+++|.++  +.. |. .|..+++|++|++++|++.+..+..|+.+++|+.++
T Consensus       183 ~l~~N~l~--~i~-~~-~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~  231 (284)
T d1ozna_         183 LLHQNRVA--HVH-PH-AFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLR  231 (284)
T ss_dssp             ECCSSCCC--EEC-TT-TTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEE
T ss_pred             hhhhcccc--ccC-hh-HhhhhhhcccccccccccccccccccccccccCEEE
Confidence            99999888  444 55 888889999999999999887778888888888653

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=1.6e-19  Score=138.04  Aligned_cols=178  Identities=18%  Similarity=0.105  Sum_probs=113.1

Q ss_pred             CCCccCceecCccccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcCC
Q 038163            2 SFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDD   81 (207)
Q Consensus         2 ~~n~~~~~~p~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~~   81 (207)
                      ++++++ .+|+.+ .  +++++|+|++|.|  ....+..|.++++|++|++++|.++.. +    .+..+++|++|++++
T Consensus        18 ~~~~L~-~iP~~l-p--~~l~~L~Ls~N~i--~~l~~~~f~~l~~L~~L~L~~N~l~~l-~----~~~~l~~L~~L~Ls~   86 (266)
T d1p9ag_          18 DKRNLT-ALPPDL-P--KDTTILHLSENLL--YTFSLATLMPYTRLTQLNLDRAELTKL-Q----VDGTLPVLGTLDLSH   86 (266)
T ss_dssp             TTSCCS-SCCSCC-C--TTCCEEECTTSCC--SEEEGGGGTTCTTCCEEECTTSCCCEE-E----CCSCCTTCCEEECCS
T ss_pred             cCCCCC-eeCcCc-C--cCCCEEECcCCcC--CCcCHHHhhcccccccccccccccccc-c----ccccccccccccccc
Confidence            345566 466543 2  4678888888888  333345677888888888888887753 3    446677888888888


Q ss_pred             CCCChHHHHhhcccccc-----cCCcccceeccccccccCCCCCCCccceecccccccccCchhHHHHHhcCCCccEEEc
Q 038163           82 SPLHISLLQSIASIFPL-----LKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSL  156 (207)
Q Consensus        82 ~~~~~~~~~~l~~l~~L-----~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L~l  156 (207)
                      |.+.. .+..+..+++|     .++.+....+.       .+..+.+++.+++.  +|.++...+..+. .++.++.+++
T Consensus        87 N~l~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~-------~~~~l~~l~~L~l~--~n~l~~l~~~~~~-~l~~l~~l~l  155 (266)
T d1p9ag_          87 NQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLG-------ALRGLGELQELYLK--GNELKTLPPGLLT-PTPKLEKLSL  155 (266)
T ss_dssp             SCCSS-CCCCTTTCTTCCEEECCSSCCCCCCSS-------TTTTCTTCCEEECT--TSCCCCCCTTTTT-TCTTCCEEEC
T ss_pred             ccccc-cccccccccccccccccccccceeecc-------cccccccccccccc--ccccceecccccc-ccccchhccc
Confidence            87763 23333334433     55555443333       55666777777777  7766644444444 5667777777


Q ss_pred             cCCccCcccccchhhhhcCCCCCceEEecCCcCCCCccccccCCCCCccC
Q 038163          157 SYYTLGINSSETLNQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRIL  206 (207)
Q Consensus       157 ~~n~~~~~~~i~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l  206 (207)
                      ++|.++   .+ +...+..+++|+.|++++|++. .+|..+..+++|+.|
T Consensus       156 ~~N~l~---~~-~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L  200 (266)
T d1p9ag_         156 ANNNLT---EL-PAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFA  200 (266)
T ss_dssp             TTSCCS---CC-CTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEE
T ss_pred             cccccc---cc-CccccccccccceeecccCCCc-ccChhHCCCCCCCEE
Confidence            777776   44 3325666777777777777776 466656666666654

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=2.4e-19  Score=137.05  Aligned_cols=166  Identities=17%  Similarity=0.119  Sum_probs=137.1

Q ss_pred             CCCCccCceecCccccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcC
Q 038163            1 MSFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLD   80 (207)
Q Consensus         1 l~~n~~~~~~p~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~   80 (207)
                      |++|.+. .+|+.+|.++++|++|++++|.+   ..++ .+..+++|++|++++|.++.. +   ..+..+++|++|+++
T Consensus        38 Ls~N~i~-~l~~~~f~~l~~L~~L~L~~N~l---~~l~-~~~~l~~L~~L~Ls~N~l~~~-~---~~~~~l~~L~~L~l~  108 (266)
T d1p9ag_          38 LSENLLY-TFSLATLMPYTRLTQLNLDRAEL---TKLQ-VDGTLPVLGTLDLSHNQLQSL-P---LLGQTLPALTVLDVS  108 (266)
T ss_dssp             CTTSCCS-EEEGGGGTTCTTCCEEECTTSCC---CEEE-CCSCCTTCCEEECCSSCCSSC-C---CCTTTCTTCCEEECC
T ss_pred             CcCCcCC-CcCHHHhhccccccccccccccc---cccc-ccccccccccccccccccccc-c---ccccccccccccccc
Confidence            5789998 57778899999999999999999   4455 457899999999999999875 4   477889999999999


Q ss_pred             CCCCChHHHHhhcccccc-----cCCcccceeccccccccCCCCCCCccceecccccccccCchhHHHHHhcCCCccEEE
Q 038163           81 DSPLHISLLQSIASIFPL-----LKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLS  155 (207)
Q Consensus        81 ~~~~~~~~~~~l~~l~~L-----~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L~  155 (207)
                      ++.+..........+.++     .+|.+....+.       .+..++.++.++++  +|.++...+..+. .+++|++|+
T Consensus       109 ~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~-------~~~~l~~l~~l~l~--~N~l~~~~~~~~~-~l~~L~~L~  178 (266)
T d1p9ag_         109 FNRLTSLPLGALRGLGELQELYLKGNELKTLPPG-------LLTPTPKLEKLSLA--NNNLTELPAGLLN-GLENLDTLL  178 (266)
T ss_dssp             SSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTT-------TTTTCTTCCEEECT--TSCCSCCCTTTTT-TCTTCCEEE
T ss_pred             ccccceeeccccccccccccccccccccceeccc-------cccccccchhcccc--cccccccCccccc-cccccceee
Confidence            998775444444444443     77777764444       67788999999999  9999876667777 899999999


Q ss_pred             ccCCccCcccccchhhhhcCCCCCceEEecCCcCC
Q 038163          156 LSYYTLGINSSETLNQGLCSLVHLQELYIASNDLR  190 (207)
Q Consensus       156 l~~n~~~~~~~i~~~~~~~~~~~L~~L~l~~n~l~  190 (207)
                      +++|.++   .+ |. .+..+++|+.|++++|++.
T Consensus       179 Ls~N~L~---~l-p~-~~~~~~~L~~L~L~~Np~~  208 (266)
T d1p9ag_         179 LQENSLY---TI-PK-GFFGSHLLPFAFLHGNPWL  208 (266)
T ss_dssp             CCSSCCC---CC-CT-TTTTTCCCSEEECCSCCBC
T ss_pred             cccCCCc---cc-Ch-hHCCCCCCCEEEecCCCCC
Confidence            9999998   88 87 7778999999999999876

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.72  E-value=3.9e-17  Score=126.69  Aligned_cols=67  Identities=16%  Similarity=0.212  Sum_probs=43.7

Q ss_pred             CCCCCCccceecccccccccCchhHHHHHhcCCCccEEEccCCccCcccccchhhhhcCCCCCceEEecCCcCCC
Q 038163          117 DFPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSLSYYTLGINSSETLNQGLCSLVHLQELYIASNDLRG  191 (207)
Q Consensus       117 ~~~~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L~l~~n~~~~~~~i~~~~~~~~~~~L~~L~l~~n~l~~  191 (207)
                      .+.+++.++.|+++  +|.++...+..+. .+++|+.|++++|.++   .+ |. .+..+++|+.|++++|+++.
T Consensus       190 ~~~~~~~l~~L~~s--~n~l~~~~~~~~~-~l~~L~~L~L~~N~L~---~l-p~-~l~~l~~L~~L~Ls~N~i~~  256 (305)
T d1xkua_         190 SLKGLNNLAKLGLS--FNSISAVDNGSLA-NTPHLRELHLNNNKLV---KV-PG-GLADHKYIQVVYLHNNNISA  256 (305)
T ss_dssp             GGTTCTTCCEEECC--SSCCCEECTTTGG-GSTTCCEEECCSSCCS---SC-CT-TTTTCSSCCEEECCSSCCCC
T ss_pred             Hhhccccccccccc--ccccccccccccc-ccccceeeeccccccc---cc-cc-ccccccCCCEEECCCCccCc
Confidence            45556666666666  6666654455555 6667777777777776   66 65 66667777777777776664

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=2.8e-17  Score=126.47  Aligned_cols=182  Identities=17%  Similarity=0.100  Sum_probs=141.7

Q ss_pred             CCccCceecCccccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcCC-
Q 038163            3 FNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDD-   81 (207)
Q Consensus         3 ~n~~~~~~p~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~~-   81 (207)
                      ++++. .+|...   -..+++|+|++|.|  ....+..|.+++.|++|++++|.+....+   ..+..+..++.++... 
T Consensus        20 ~~~L~-~iP~~i---p~~~~~L~Ls~N~i--~~i~~~~f~~l~~L~~L~ls~n~l~~i~~---~~~~~~~~~~~l~~~~~   90 (284)
T d1ozna_          20 QQGLQ-AVPVGI---PAASQRIFLHGNRI--SHVPAASFRACRNLTILWLHSNVLARIDA---AAFTGLALLEQLDLSDN   90 (284)
T ss_dssp             SSCCS-SCCTTC---CTTCSEEECTTSCC--CEECTTTTTTCTTCCEEECCSSCCCEECT---TTTTTCTTCCEEECCSC
T ss_pred             CCCCC-ccCCCC---CCCCCEEECcCCcC--CCCCHHHhhcccccccccccccccccccc---ccccccccccccccccc
Confidence            44455 577543   25678999999999  33334579999999999999999998777   6777788899987654 


Q ss_pred             CCCChHHHHhhcccccc-----cCCcccceeccccccccCCCCCCCccceecccccccccCchhHHHHHhcCCCccEEEc
Q 038163           82 SPLHISLLQSIASIFPL-----LKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSL  156 (207)
Q Consensus        82 ~~~~~~~~~~l~~l~~L-----~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L~l  156 (207)
                      +.+....+..+..+++|     ..|.+....+.       .+..+..|+.+++.  +|.++...+..+. .+++|+.|++
T Consensus        91 ~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~-------~~~~~~~L~~l~l~--~N~l~~i~~~~f~-~~~~L~~L~l  160 (284)
T d1ozna_          91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPG-------LFRGLAALQYLYLQ--DNALQALPDDTFR-DLGNLTHLFL  160 (284)
T ss_dssp             TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTT-------TTTTCTTCCEEECC--SSCCCCCCTTTTT-TCTTCCEEEC
T ss_pred             cccccccchhhcccccCCEEecCCccccccccc-------ccchhcccchhhhc--cccccccChhHhc-cccchhhccc
Confidence            44543334445555555     66666554444       67788899999999  9999865566677 8899999999


Q ss_pred             cCCccCcccccchhhhhcCCCCCceEEecCCcCCCCccccccCCCCCccCC
Q 038163          157 SYYTLGINSSETLNQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILD  207 (207)
Q Consensus       157 ~~n~~~~~~~i~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~  207 (207)
                      ++|.++   .+ +...+.++++|+.+++++|++.+..|..|..+++|+.||
T Consensus       161 ~~N~l~---~l-~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~  207 (284)
T d1ozna_         161 HGNRIS---SV-PERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLY  207 (284)
T ss_dssp             CSSCCC---EE-CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred             ccCccc---cc-chhhhccccccchhhhhhccccccChhHhhhhhhccccc
Confidence            999998   66 544889999999999999999988889999999998764

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.69  E-value=1.7e-16  Score=116.04  Aligned_cols=169  Identities=20%  Similarity=0.331  Sum_probs=128.8

Q ss_pred             CCCccCceecCccccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcCC
Q 038163            2 SFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDD   81 (207)
Q Consensus         2 ~~n~~~~~~p~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~~   81 (207)
                      +++.+++.++   ...+.++++|+++++.+.   .+ +.+..+++|++|++++|.+++. +    .+..+++|++|++++
T Consensus        26 ~~~~~~~~~~---~~~l~~l~~L~l~~~~i~---~l-~~l~~l~nL~~L~Ls~N~l~~~-~----~l~~l~~L~~L~l~~   93 (199)
T d2omxa2          26 GKTNVTDTVS---QTDLDQVTTLQADRLGIK---SI-DGVEYLNNLTQINFSNNQLTDI-T----PLKNLTKLVDILMNN   93 (199)
T ss_dssp             TCSSTTSEEC---HHHHTTCCEEECTTSCCC---CC-TTGGGCTTCCEEECCSSCCCCC-G----GGTTCTTCCEEECCS
T ss_pred             CCCCCCCccC---HHHhcCCCEEECCCCCCC---Cc-cccccCCCcCcCccccccccCc-c----cccCCcccccccccc
Confidence            4566666543   246789999999999993   33 3477899999999999999874 3    478899999999999


Q ss_pred             CCCChHHHHhhcccccc-----cCCcccceeccccccccCCCCCCCccceecccccccccCchhHHHHHhcCCCccEEEc
Q 038163           82 SPLHISLLQSIASIFPL-----LKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSL  156 (207)
Q Consensus        82 ~~~~~~~~~~l~~l~~L-----~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L~l  156 (207)
                      |.+...  ..+..++.|     .++.....  .       .+..+++|+.++++  +|.+.. + ..+. .+++++.|++
T Consensus        94 n~~~~~--~~l~~l~~L~~L~l~~~~~~~~--~-------~~~~l~~L~~L~l~--~n~l~~-~-~~l~-~~~~L~~L~l  157 (199)
T d2omxa2          94 NQIADI--TPLANLTNLTGLTLFNNQITDI--D-------PLKNLTNLNRLELS--SNTISD-I-SALS-GLTSLQQLNF  157 (199)
T ss_dssp             SCCCCC--GGGTTCTTCSEEECCSSCCCCC--G-------GGTTCTTCSEEECC--SSCCCC-C-GGGT-TCTTCSEEEC
T ss_pred             cccccc--cccccccccccccccccccccc--c-------ccchhhhhHHhhhh--hhhhcc-c-cccc-cccccccccc
Confidence            987632  234444444     44444331  2       56788999999999  998874 3 3466 7899999999


Q ss_pred             cCCccCcccccchhhhhcCCCCCceEEecCCcCCCCccccccCCCCCccC
Q 038163          157 SYYTLGINSSETLNQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRIL  206 (207)
Q Consensus       157 ~~n~~~~~~~i~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l  206 (207)
                      .+|.++   .+ +  .++++++|+.|++++|++++ ++ .++.+++|+.|
T Consensus       158 ~~n~l~---~l-~--~l~~l~~L~~L~ls~N~i~~-i~-~l~~L~~L~~L  199 (199)
T d2omxa2         158 SSNQVT---DL-K--PLANLTTLERLDISSNKVSD-IS-VLAKLTNLESL  199 (199)
T ss_dssp             CSSCCC---CC-G--GGTTCTTCCEEECCSSCCCC-CG-GGGGCTTCSEE
T ss_pred             cccccc---CC-c--cccCCCCCCEEECCCCCCCC-Cc-cccCCCCCCcC
Confidence            999998   66 4  47899999999999999885 44 57888888864

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.69  E-value=1.3e-16  Score=117.55  Aligned_cols=170  Identities=22%  Similarity=0.362  Sum_probs=128.8

Q ss_pred             CCCccCceecCccccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcCC
Q 038163            2 SFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDD   81 (207)
Q Consensus         2 ~~n~~~~~~p~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~~   81 (207)
                      .++.+.+.++.   ..+..+++|+++++.+   ..++ .+..+++|++|++++|.+++..     .+..+++|++|++++
T Consensus        32 ~~~~~~~~~~~---~~L~~L~~L~l~~~~i---~~l~-~l~~l~~L~~L~L~~n~i~~l~-----~~~~l~~L~~L~l~~   99 (210)
T d1h6ta2          32 KKKSVTDAVTQ---NELNSIDQIIANNSDI---KSVQ-GIQYLPNVTKLFLNGNKLTDIK-----PLANLKNLGWLFLDE   99 (210)
T ss_dssp             TCSCTTSEECH---HHHHTCCEEECTTSCC---CCCT-TGGGCTTCCEEECCSSCCCCCG-----GGTTCTTCCEEECCS
T ss_pred             CcCccCCccCH---HHhcCccEEECcCCCC---CCch-hHhhCCCCCEEeCCCccccCcc-----ccccCcccccccccc
Confidence            34556655542   3577899999999999   3333 4778999999999999998753     457889999999999


Q ss_pred             CCCChHHHHhhcccccc-----cCCcccceeccccccccCCCCCCCccceecccccccccCchhHHHHHhcCCCccEEEc
Q 038163           82 SPLHISLLQSIASIFPL-----LKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSL  156 (207)
Q Consensus        82 ~~~~~~~~~~l~~l~~L-----~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L~l  156 (207)
                      |.++. . ..+..+++|     .+|.+.. + .       .+.+++.++.++++  +|.+++  +.... .+++|+.+++
T Consensus       100 n~i~~-l-~~l~~l~~L~~L~l~~~~~~~-~-~-------~l~~l~~l~~l~~~--~n~l~~--~~~~~-~l~~L~~l~l  163 (210)
T d1h6ta2         100 NKVKD-L-SSLKDLKKLKSLSLEHNGISD-I-N-------GLVHLPQLESLYLG--NNKITD--ITVLS-RLTKLDTLSL  163 (210)
T ss_dssp             SCCCC-G-GGGTTCTTCCEEECTTSCCCC-C-G-------GGGGCTTCCEEECC--SSCCCC--CGGGG-GCTTCSEEEC
T ss_pred             ccccc-c-ccccccccccccccccccccc-c-c-------cccccccccccccc--cccccc--ccccc-cccccccccc
Confidence            99874 2 245555555     4444432 2 2       56778899999999  998875  23455 7899999999


Q ss_pred             cCCccCcccccchhhhhcCCCCCceEEecCCcCCCCccccccCCCCCccCC
Q 038163          157 SYYTLGINSSETLNQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILD  207 (207)
Q Consensus       157 ~~n~~~~~~~i~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~  207 (207)
                      ++|.+.   .+ +  .+..+++|+.|++++|++.+ ++ .+..+++|++||
T Consensus       164 ~~n~l~---~i-~--~l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~  206 (210)
T d1h6ta2         164 EDNQIS---DI-V--PLAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLE  206 (210)
T ss_dssp             CSSCCC---CC-G--GGTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEE
T ss_pred             cccccc---cc-c--cccCCCCCCEEECCCCCCCC-Ch-hhcCCCCCCEEE
Confidence            999998   66 4  47889999999999999974 55 588899999875

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.67  E-value=3.1e-16  Score=116.71  Aligned_cols=168  Identities=20%  Similarity=0.278  Sum_probs=103.9

Q ss_pred             cCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcCCCCCChHHHHhhccc
Q 038163           16 NGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDDSPLHISLLQSIASI   95 (207)
Q Consensus        16 ~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l   95 (207)
                      ..+.+|++|++.+|.|   ..+ +.+..+++|++|++++|.+++..     .+.++++++++++++|.++.  ...+..+
T Consensus        38 ~~l~~L~~L~l~~~~i---~~l-~~l~~l~~L~~L~ls~n~i~~~~-----~l~~l~~l~~l~~~~n~~~~--i~~l~~l  106 (227)
T d1h6ua2          38 ADLDGITTLSAFGTGV---TTI-EGVQYLNNLIGLELKDNQITDLA-----PLKNLTKITELELSGNPLKN--VSAIAGL  106 (227)
T ss_dssp             HHHHTCCEEECTTSCC---CCC-TTGGGCTTCCEEECCSSCCCCCG-----GGTTCCSCCEEECCSCCCSC--CGGGTTC
T ss_pred             HHcCCcCEEECCCCCC---Ccc-hhHhcCCCCcEeecCCceeeccc-----cccccccccccccccccccc--ccccccc
Confidence            4456666666666666   223 23556666666666666665432     34555666666666665542  1122222


Q ss_pred             ccc-----cCCcccceeccc-------------cccccCCCCCCCccceecccccccccCchhHHHHHhcCCCccEEEcc
Q 038163           96 FPL-----LKNLSMIGCEVN-------------GVIRGQDFPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSLS  157 (207)
Q Consensus        96 ~~L-----~~n~~~~~~~~~-------------~~~~~~~~~~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L~l~  157 (207)
                      +.|     .++...+..+..             .......+..+++|+.|++.  +|.+.+..  .+. .+++|+.|+++
T Consensus       107 ~~L~~l~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~--~n~~~~~~--~l~-~l~~L~~L~Ls  181 (227)
T d1h6ua2         107 QSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIG--NAQVSDLT--PLA-NLSKLTTLKAD  181 (227)
T ss_dssp             TTCCEEECTTSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECC--SSCCCCCG--GGT-TCTTCCEEECC
T ss_pred             ccccccccccccccccchhccccchhhhhchhhhhchhhhhcccccccccccc--ccccccch--hhc-ccccceecccC
Confidence            222     222221110000             01111145677889999999  99886433  256 89999999999


Q ss_pred             CCccCcccccchhhhhcCCCCCceEEecCCcCCCCccccccCCCCCccCC
Q 038163          158 YYTLGINSSETLNQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILD  207 (207)
Q Consensus       158 ~n~~~~~~~i~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~  207 (207)
                      +|.+.   .+ +  .++++++|++|++++|++++ ++ .++.+++|+.|+
T Consensus       182 ~n~l~---~l-~--~l~~l~~L~~L~Ls~N~lt~-i~-~l~~l~~L~~L~  223 (227)
T d1h6ua2         182 DNKIS---DI-S--PLASLPNLIEVHLKNNQISD-VS-PLANTSNLFIVT  223 (227)
T ss_dssp             SSCCC---CC-G--GGGGCTTCCEEECTTSCCCB-CG-GGTTCTTCCEEE
T ss_pred             CCccC---CC-h--hhcCCCCCCEEECcCCcCCC-Cc-ccccCCCCCEEE
Confidence            99998   67 5  47889999999999999885 44 378889988764

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.67  E-value=3.2e-16  Score=121.45  Aligned_cols=185  Identities=18%  Similarity=0.187  Sum_probs=114.4

Q ss_pred             ccCceecCccccCCCCCcEEecCCCcccCCCcchh-hhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcCCCC
Q 038163            5 EINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQ-SIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDDSP   83 (207)
Q Consensus         5 ~~~~~~p~~~~~~l~~L~~L~ls~n~i~~~~~~~~-~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~~~~   83 (207)
                      +++ .+|+..   -+++++|++++|.|   ..+|+ .|.++++|++|++++|.+....|   ..+.+++.|++|++++|.
T Consensus        21 ~L~-~lP~~l---~~~l~~L~Ls~N~i---~~l~~~~f~~l~~L~~L~l~~n~~~~i~~---~~f~~l~~L~~L~l~~n~   90 (305)
T d1xkua_          21 GLE-KVPKDL---PPDTALLDLQNNKI---TEIKDGDFKNLKNLHTLILINNKISKISP---GAFAPLVKLERLYLSKNQ   90 (305)
T ss_dssp             CCC-SCCCSC---CTTCCEEECCSSCC---CCBCTTTTTTCTTCCEEECCSSCCCCBCT---TTTTTCTTCCEEECCSSC
T ss_pred             CCC-ccCCCC---CCCCCEEECcCCcC---CCcChhHhhccccccccccccccccccch---hhhhCCCccCEecccCCc
Confidence            344 456543   25677777777777   34443 56677777777777777776656   566677777777777776


Q ss_pred             CChHHHHhhcccccc--cCCcccce--------------------------ecc-------cccccc-----CC--CCCC
Q 038163           84 LHISLLQSIASIFPL--LKNLSMIG--------------------------CEV-------NGVIRG-----QD--FPHS  121 (207)
Q Consensus        84 ~~~~~~~~l~~l~~L--~~n~~~~~--------------------------~~~-------~~~~~~-----~~--~~~~  121 (207)
                      ++.........+..|  ..|.+.+.                          .+.       ....++     ..  ...+
T Consensus        91 l~~l~~~~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~~~~  170 (305)
T d1xkua_          91 LKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP  170 (305)
T ss_dssp             CSBCCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCC
T ss_pred             cCcCccchhhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCccccCcccC
Confidence            542110001111111  11111100                          000       000000     01  1234


Q ss_pred             CccceecccccccccCchhHHHHHhcCCCccEEEccCCccCcccccchhhhhcCCCCCceEEecCCcCCCCccccccCCC
Q 038163          122 KSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSLSYYTLGINSSETLNQGLCSLVHLQELYIASNDLRGSLPWCMANMT  201 (207)
Q Consensus       122 ~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L~l~~n~~~~~~~i~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~  201 (207)
                      ++|+.|++.  +|......+..+. .++.++.|++++|.+.   .+ +...+.++++|++|++++|++. .+|..+..++
T Consensus       171 ~~L~~L~l~--~n~~~~~~~~~~~-~~~~l~~L~~s~n~l~---~~-~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~  242 (305)
T d1xkua_         171 PSLTELHLD--GNKITKVDAASLK-GLNNLAKLGLSFNSIS---AV-DNGSLANTPHLRELHLNNNKLV-KVPGGLADHK  242 (305)
T ss_dssp             TTCSEEECT--TSCCCEECTGGGT-TCTTCCEEECCSSCCC---EE-CTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCS
T ss_pred             CccCEEECC--CCcCCCCChhHhh-cccccccccccccccc---cc-ccccccccccceeeeccccccc-cccccccccc
Confidence            677888888  7777766666677 8889999999999998   55 3338889999999999999998 4688899999


Q ss_pred             CCccCC
Q 038163          202 SLRILD  207 (207)
Q Consensus       202 ~L~~l~  207 (207)
                      +|++|+
T Consensus       243 ~L~~L~  248 (305)
T d1xkua_         243 YIQVVY  248 (305)
T ss_dssp             SCCEEE
T ss_pred             CCCEEE
Confidence            998764

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=3.7e-16  Score=117.13  Aligned_cols=185  Identities=13%  Similarity=0.147  Sum_probs=109.0

Q ss_pred             CCCccCceecCccccCCCCCcEEecCCCcccCCCcch-hhhcCCCCCCEEEcC-CCcCCcccccchhcccCCCCccEEEc
Q 038163            2 SFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLL-QSIGSFSSLNSLYLS-SNNFTETVTITTQELHNFTNMEYLKL   79 (207)
Q Consensus         2 ~~n~~~~~~p~~~~~~l~~L~~L~ls~n~i~~~~~~~-~~~~~l~~L~~L~l~-~n~~~~~~~~~~~~l~~l~~L~~L~l   79 (207)
                      ++|.+. .+|+.+|.++++|++|++++|.+  ...++ ..|..++.++++++. .+.+....+   ..+..+++|+++++
T Consensus        37 s~n~i~-~l~~~~f~~l~~L~~L~ls~n~~--~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~---~~~~~l~~L~~l~l  110 (242)
T d1xwdc1          37 VLTKLR-VIQKGAFSGFGDLEKIEISQNDV--LEVIEADVFSNLPKLHEIRIEKANNLLYINP---EAFQNLPNLQYLLI  110 (242)
T ss_dssp             ESCCCC-EECTTTTTTCTTCCEEEEESCTT--CCEECSSSEESCTTCCEEEEECCTTCCEECT---TSEECCTTCCEEEE
T ss_pred             cCCcCC-ccChhHhhccchhhhhhhccccc--cceeecccccccccccccccccccccccccc---cccccccccccccc
Confidence            344544 45555555566666666666555  23222 244555555555543 234444444   44556667777777


Q ss_pred             CCCCCChHH-HHhhcccccc-----cCCcccceeccccccccCCCCCCC-ccceecccccccccCchhHHHHHhcCCCcc
Q 038163           80 DDSPLHISL-LQSIASIFPL-----LKNLSMIGCEVNGVIRGQDFPHSK-SLEHLDMEFMRIALNTSFLQIISESMSSLK  152 (207)
Q Consensus        80 ~~~~~~~~~-~~~l~~l~~L-----~~n~~~~~~~~~~~~~~~~~~~~~-~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~  152 (207)
                      +++.+.... ...+..+..+     ..+.+....+.       .+..++ .++.+++.  +|.++. ++.... ..++++
T Consensus       111 ~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~-------~~~~~~~~l~~L~l~--~n~l~~-i~~~~~-~~~~l~  179 (242)
T d1xwdc1         111 SNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERN-------SFVGLSFESVILWLN--KNGIQE-IHNCAF-NGTQLD  179 (242)
T ss_dssp             ESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTT-------SSTTSBSSCEEEECC--SSCCCE-ECTTTT-TTCCEE
T ss_pred             chhhhccccccccccccccccccccccccccccccc-------ccccccccceeeecc--cccccc-cccccc-cchhhh
Confidence            766654211 1111222222     22233322222       555554 78889999  888874 333333 456666


Q ss_pred             EE-EccCCccCcccccchhhhhcCCCCCceEEecCCcCCCCccccccCCCCCccCC
Q 038163          153 YL-SLSYYTLGINSSETLNQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILD  207 (207)
Q Consensus       153 ~L-~l~~n~~~~~~~i~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~  207 (207)
                      .+ .+++|.++   ++ +...|.++++|+.|++++|++....+..|.++++|+.++
T Consensus       180 ~~~~l~~n~l~---~l-~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~  231 (242)
T d1xwdc1         180 ELNLSDNNNLE---EL-PNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARS  231 (242)
T ss_dssp             EEECTTCTTCC---CC-CTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSS
T ss_pred             ccccccccccc---cc-cHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCc
Confidence            66 46777887   78 664789999999999999999865557789999888764

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.63  E-value=3.4e-15  Score=118.49  Aligned_cols=170  Identities=21%  Similarity=0.267  Sum_probs=123.0

Q ss_pred             CCCccCceecCccccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcCC
Q 038163            2 SFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDD   81 (207)
Q Consensus         2 ~~n~~~~~~p~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~~   81 (207)
                      ++|.+.+..|   +...+++++|++++|.+   ..++ .+..+++|+.|++++|.+++..     .+..+++|++|++++
T Consensus       205 ~~n~i~~~~~---~~~~~~L~~L~l~~n~l---~~~~-~l~~l~~L~~L~l~~n~l~~~~-----~~~~~~~L~~L~l~~  272 (384)
T d2omza2         205 TNNQISDITP---LGILTNLDELSLNGNQL---KDIG-TLASLTNLTDLDLANNQISNLA-----PLSGLTKLTELKLGA  272 (384)
T ss_dssp             CSSCCCCCGG---GGGCTTCCEEECCSSCC---CCCG-GGGGCTTCSEEECCSSCCCCCG-----GGTTCTTCSEEECCS
T ss_pred             cCCccCCCCc---ccccCCCCEEECCCCCC---CCcc-hhhcccccchhccccCccCCCC-----cccccccCCEeeccC
Confidence            4566665333   35567788888888888   2233 5677888888888888877642     466778888888888


Q ss_pred             CCCChHHHHhhcccccc-----cCCcccceeccccccccCCCCCCCccceecccccccccCchhHHHHHhcCCCccEEEc
Q 038163           82 SPLHISLLQSIASIFPL-----LKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSL  156 (207)
Q Consensus        82 ~~~~~~~~~~l~~l~~L-----~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L~l  156 (207)
                      +.+....  .+..+..+     ..|.+.+  ..       .+..++.++.++++  +|.+++..  .+. .+++|+.|++
T Consensus       273 ~~l~~~~--~~~~~~~l~~l~~~~n~l~~--~~-------~~~~~~~l~~L~ls--~n~l~~l~--~l~-~l~~L~~L~L  336 (384)
T d2omza2         273 NQISNIS--PLAGLTALTNLELNENQLED--IS-------PISNLKNLTYLTLY--FNNISDIS--PVS-SLTKLQRLFF  336 (384)
T ss_dssp             SCCCCCG--GGTTCTTCSEEECCSSCCSC--CG-------GGGGCTTCSEEECC--SSCCSCCG--GGG-GCTTCCEEEC
T ss_pred             cccCCCC--cccccccccccccccccccc--cc-------ccchhcccCeEECC--CCCCCCCc--ccc-cCCCCCEEEC
Confidence            8776321  23333332     4444443  12       56778899999999  99998643  366 8999999999


Q ss_pred             cCCccCcccccchhhhhcCCCCCceEEecCCcCCCCccccccCCCCCccCC
Q 038163          157 SYYTLGINSSETLNQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILD  207 (207)
Q Consensus       157 ~~n~~~~~~~i~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~  207 (207)
                      ++|.++   .+ +  .+..+++|++|++++|++++..|  +..+++|+.|+
T Consensus       337 ~~n~l~---~l-~--~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~  379 (384)
T d2omza2         337 ANNKVS---DV-S--SLANLTNINWLSAGHNQISDLTP--LANLTRITQLG  379 (384)
T ss_dssp             CSSCCC---CC-G--GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEE
T ss_pred             CCCCCC---CC-h--hHcCCCCCCEEECCCCcCCCChh--hccCCCCCEee
Confidence            999998   66 4  58889999999999999986533  78888888764

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.61  E-value=6.2e-16  Score=112.32  Aligned_cols=123  Identities=15%  Similarity=0.143  Sum_probs=89.7

Q ss_pred             CCCccCceecCccccCCCCCcEEecCCCcccCCCcc-hhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcC
Q 038163            2 SFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKL-LQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLD   80 (207)
Q Consensus         2 ~~n~~~~~~p~~~~~~l~~L~~L~ls~n~i~~~~~~-~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~   80 (207)
                      ++++++ .||+.+   -+++++|+|++|.|  ...+ +..|..+++|+.|++++|.+....+   ..+..+++|++|+++
T Consensus        16 s~~~L~-~iP~~l---p~~l~~L~Ls~N~i--~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~---~~~~~~~~L~~L~Ls   86 (192)
T d1w8aa_          16 TGRGLK-EIPRDI---PLHTTELLLNDNEL--GRISSDGLFGRLPHLVKLELKRNQLTGIEP---NAFEGASHIQELQLG   86 (192)
T ss_dssp             TTSCCS-SCCSCC---CTTCSEEECCSCCC--CSBCCSCSGGGCTTCCEEECCSSCCCCBCT---TTTTTCTTCCEEECC
T ss_pred             eCCCcC-ccCCCC---CCCCCEEEeCCCCC--cccccccccCCCceEeeeeccccccccccc---cccccccccceeeec
Confidence            566777 677654   26788899999988  3333 4567788899999999998888777   677888889999999


Q ss_pred             CCCCChHHHHhhcccccccCCcccceeccccccccCCCCCCCccceecccccccccCchhHHHHHhcCCCccEEEccCCc
Q 038163           81 DSPLHISLLQSIASIFPLLKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSLSYYT  160 (207)
Q Consensus        81 ~~~~~~~~~~~l~~l~~L~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L~l~~n~  160 (207)
                      +|.+.                    .++..      .|.++++|++|+|+  +|.++...+..+. .+++|+++++++|.
T Consensus        87 ~N~l~--------------------~l~~~------~F~~l~~L~~L~L~--~N~l~~i~~~~f~-~l~~L~~l~L~~N~  137 (192)
T d1w8aa_          87 ENKIK--------------------EISNK------MFLGLHQLKTLNLY--DNQISCVMPGSFE-HLNSLTSLNLASNP  137 (192)
T ss_dssp             SCCCC--------------------EECSS------SSTTCTTCCEEECC--SSCCCEECTTSST-TCTTCCEEECTTCC
T ss_pred             ccccc--------------------ccCHH------HHhCCCcccccccC--CccccccCHHHhc-CCcccccccccccc
Confidence            98887                    22221      56677777777777  7777755555565 67777777777777


Q ss_pred             cC
Q 038163          161 LG  162 (207)
Q Consensus       161 ~~  162 (207)
                      +.
T Consensus       138 ~~  139 (192)
T d1w8aa_         138 FN  139 (192)
T ss_dssp             BC
T ss_pred             cc
Confidence            65

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.61  E-value=8e-15  Score=107.81  Aligned_cols=152  Identities=18%  Similarity=0.257  Sum_probs=117.9

Q ss_pred             CCCCccCceecCccccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcC
Q 038163            1 MSFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLD   80 (207)
Q Consensus         1 l~~n~~~~~~p~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~   80 (207)
                      +++|.+.. ++ . +..+++|++|++++|.+   ..++ .+..+++|++|++++|.++. ++    .+..+++|++|+++
T Consensus        53 l~~~~i~~-l~-~-l~~l~~L~~L~L~~n~i---~~l~-~~~~l~~L~~L~l~~n~i~~-l~----~l~~l~~L~~L~l~  120 (210)
T d1h6ta2          53 ANNSDIKS-VQ-G-IQYLPNVTKLFLNGNKL---TDIK-PLANLKNLGWLFLDENKVKD-LS----SLKDLKKLKSLSLE  120 (210)
T ss_dssp             CTTSCCCC-CT-T-GGGCTTCCEEECCSSCC---CCCG-GGTTCTTCCEEECCSSCCCC-GG----GGTTCTTCCEEECT
T ss_pred             CcCCCCCC-ch-h-HhhCCCCCEEeCCCccc---cCcc-ccccCccccccccccccccc-cc----cccccccccccccc
Confidence            35666664 44 2 67899999999999999   3344 46889999999999999986 34    67889999999999


Q ss_pred             CCCCChHHHHhhcccccc-----cCCcccceeccccccccCCCCCCCccceecccccccccCchhHHHHHhcCCCccEEE
Q 038163           81 DSPLHISLLQSIASIFPL-----LKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLS  155 (207)
Q Consensus        81 ~~~~~~~~~~~l~~l~~L-----~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L~  155 (207)
                      +|.+..  ...+..++.+     .+|.+++.  .       .+..+++|+.++++  +|.+++..  .+. .+++|+.|+
T Consensus       121 ~~~~~~--~~~l~~l~~l~~l~~~~n~l~~~--~-------~~~~l~~L~~l~l~--~n~l~~i~--~l~-~l~~L~~L~  184 (210)
T d1h6ta2         121 HNGISD--INGLVHLPQLESLYLGNNKITDI--T-------VLSRLTKLDTLSLE--DNQISDIV--PLA-GLTKLQNLY  184 (210)
T ss_dssp             TSCCCC--CGGGGGCTTCCEEECCSSCCCCC--G-------GGGGCTTCSEEECC--SSCCCCCG--GGT-TCTTCCEEE
T ss_pred             cccccc--ccccccccccccccccccccccc--c-------cccccccccccccc--cccccccc--ccc-CCCCCCEEE
Confidence            998763  2334444444     55665542  2       45678899999999  99998532  366 899999999


Q ss_pred             ccCCccCcccccchhhhhcCCCCCceEEecC
Q 038163          156 LSYYTLGINSSETLNQGLCSLVHLQELYIAS  186 (207)
Q Consensus       156 l~~n~~~~~~~i~~~~~~~~~~~L~~L~l~~  186 (207)
                      +++|.++   .+ +  .+.++++|+.|++++
T Consensus       185 Ls~N~i~---~l-~--~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         185 LSKNHIS---DL-R--ALAGLKNLDVLELFS  209 (210)
T ss_dssp             CCSSCCC---BC-G--GGTTCTTCSEEEEEE
T ss_pred             CCCCCCC---CC-h--hhcCCCCCCEEEccC
Confidence            9999998   77 5  588999999999874

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=4.1e-15  Score=105.08  Aligned_cols=128  Identities=14%  Similarity=0.172  Sum_probs=82.8

Q ss_pred             ccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcCCCCCChHHHHhhcc
Q 038163           15 YNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDDSPLHISLLQSIAS   94 (207)
Q Consensus        15 ~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~   94 (207)
                      |....++++|++++|.|   ..++..+..+++|+.|++++|.++.. +    .+..+++|++|++++|.+.         
T Consensus        14 ~~n~~~lr~L~L~~n~I---~~i~~~~~~l~~L~~L~Ls~N~i~~l-~----~~~~l~~L~~L~ls~N~i~---------   76 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKI---PVIENLGATLDQFDAIDFSDNEIRKL-D----GFPLLRRLKTLLVNNNRIC---------   76 (162)
T ss_dssp             EECTTSCEEEECTTSCC---CSCCCGGGGTTCCSEEECCSSCCCEE-C----CCCCCSSCCEEECCSSCCC---------
T ss_pred             ccCcCcCcEEECCCCCC---CccCccccccccCCEEECCCCCCCcc-C----CcccCcchhhhhccccccc---------
Confidence            45666777888888888   44555556677788888888877753 3    4667777888888887776         


Q ss_pred             cccccCCcccceeccccccccCCCCCCCccceecccccccccCchh-HHHHHhcCCCccEEEccCCccCcccccchh---
Q 038163           95 IFPLLKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSF-LQIISESMSSLKYLSLSYYTLGINSSETLN---  170 (207)
Q Consensus        95 l~~L~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~~-~~~l~~~~~~L~~L~l~~n~~~~~~~i~~~---  170 (207)
                                 .++..      .+..+++|++|+++  +|.++... ...+. .+++|+++++++|.++   .. +.   
T Consensus        77 -----------~l~~~------~~~~l~~L~~L~L~--~N~i~~~~~l~~l~-~l~~L~~L~l~~N~i~---~~-~~~r~  132 (162)
T d1a9na_          77 -----------RIGEG------LDQALPDLTELILT--NNSLVELGDLDPLA-SLKSLTYLCILRNPVT---NK-KHYRL  132 (162)
T ss_dssp             -----------EECSC------HHHHCTTCCEEECC--SCCCCCGGGGGGGG-GCTTCCEEECCSSGGG---GS-TTHHH
T ss_pred             -----------CCCcc------ccccccccccceec--cccccccccccccc-cccccchhhcCCCccc---cc-cchHH
Confidence                       22220      23456677777777  77775321 23455 6777777777777776   33 21   


Q ss_pred             hhhcCCCCCceEE
Q 038163          171 QGLCSLVHLQELY  183 (207)
Q Consensus       171 ~~~~~~~~L~~L~  183 (207)
                      ..+..+++|+.||
T Consensus       133 ~~i~~lp~L~~LD  145 (162)
T d1a9na_         133 YVIYKVPQVRVLD  145 (162)
T ss_dssp             HHHHHCTTCSEET
T ss_pred             HHHHHCCCcCeeC
Confidence            1355677777665

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.56  E-value=4.2e-15  Score=107.84  Aligned_cols=147  Identities=17%  Similarity=0.201  Sum_probs=113.7

Q ss_pred             CCCCccCceecCccccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcC
Q 038163            1 MSFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLD   80 (207)
Q Consensus         1 l~~n~~~~~~p~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~   80 (207)
                      |++|.|++.+++..|..+++|++|++++|.+  ....+..+..++.|++|++++|.++...+   ..+..+++|++|+|+
T Consensus        36 Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i--~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~---~~F~~l~~L~~L~L~  110 (192)
T d1w8aa_          36 LNDNELGRISSDGLFGRLPHLVKLELKRNQL--TGIEPNAFEGASHIQELQLGENKIKEISN---KMFLGLHQLKTLNLY  110 (192)
T ss_dssp             CCSCCCCSBCCSCSGGGCTTCCEEECCSSCC--CCBCTTTTTTCTTCCEEECCSCCCCEECS---SSSTTCTTCCEEECC
T ss_pred             eCCCCCcccccccccCCCceEeeeecccccc--ccccccccccccccceeeeccccccccCH---HHHhCCCcccccccC
Confidence            6889998888888899999999999999999  56677889999999999999999998877   788999999999999


Q ss_pred             CCCCChHHHHhhcccccccCCcccceeccccccccCCCCCCCccceecccccccccCchh-HHHHHhcCCCccEEEccCC
Q 038163           81 DSPLHISLLQSIASIFPLLKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSF-LQIISESMSSLKYLSLSYY  159 (207)
Q Consensus        81 ~~~~~~~~~~~l~~l~~L~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~~-~~~l~~~~~~L~~L~l~~n  159 (207)
                      +|.++                    .++..      .|..+++|++++++  +|.+.... ..++. .  .++.+.+..+
T Consensus       111 ~N~l~--------------------~i~~~------~f~~l~~L~~l~L~--~N~~~~~~~~~~~~-~--~l~~~~l~~~  159 (192)
T d1w8aa_         111 DNQIS--------------------CVMPG------SFEHLNSLTSLNLA--SNPFNCNCHLAWFA-E--WLRKKSLNGG  159 (192)
T ss_dssp             SSCCC--------------------EECTT------SSTTCTTCCEEECT--TCCBCCSGGGHHHH-H--HHHHHCCSGG
T ss_pred             Ccccc--------------------ccCHH------HhcCCccccccccc--ccccccccchHHHh-h--hhhhhcccCC
Confidence            99997                    33331      78889999999999  99886432 23333 2  2344455555


Q ss_pred             ccCcccccchhhhhcCCCCCceEEecCCcCC
Q 038163          160 TLGINSSETLNQGLCSLVHLQELYIASNDLR  190 (207)
Q Consensus       160 ~~~~~~~i~~~~~~~~~~~L~~L~l~~n~l~  190 (207)
                      .++  ... |.    .+..++.++++.+.+.
T Consensus       160 ~~~--c~~-p~----~l~~~~l~~L~~n~l~  183 (192)
T d1w8aa_         160 AAR--CGA-PS----KVRDVQIKDLPHSEFK  183 (192)
T ss_dssp             GCB--BCS-ST----TTTTSBGGGSCTTTCC
T ss_pred             CeE--eCC-Ch----hhcCCEeeecCHhhCc
Confidence            554  333 43    3455666778877775

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.54  E-value=1e-13  Score=100.95  Aligned_cols=148  Identities=18%  Similarity=0.237  Sum_probs=113.9

Q ss_pred             CCCCccCceecCccccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcC
Q 038163            1 MSFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLD   80 (207)
Q Consensus         1 l~~n~~~~~~p~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~   80 (207)
                      +++|.+. .+.  .+..+++|++|++++|.+   ..++ .+.++++|++|++++|.+... +    .+..++.|++|+++
T Consensus        47 l~~~~i~-~l~--~l~~l~nL~~L~Ls~N~l---~~~~-~l~~l~~L~~L~l~~n~~~~~-~----~l~~l~~L~~L~l~  114 (199)
T d2omxa2          47 ADRLGIK-SID--GVEYLNNLTQINFSNNQL---TDIT-PLKNLTKLVDILMNNNQIADI-T----PLANLTNLTGLTLF  114 (199)
T ss_dssp             CTTSCCC-CCT--TGGGCTTCCEEECCSSCC---CCCG-GGTTCTTCCEEECCSSCCCCC-G----GGTTCTTCSEEECC
T ss_pred             CCCCCCC-Ccc--ccccCCCcCcCccccccc---cCcc-cccCCcccccccccccccccc-c----cccccccccccccc
Confidence            3567776 343  268899999999999999   3344 388999999999999988764 3    57889999999999


Q ss_pred             CCCCChHHHHhhcccccc-----cCCcccceeccccccccCCCCCCCccceecccccccccCchhHHHHHhcCCCccEEE
Q 038163           81 DSPLHISLLQSIASIFPL-----LKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLS  155 (207)
Q Consensus        81 ~~~~~~~~~~~l~~l~~L-----~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L~  155 (207)
                      ++.....  ..+..+++|     ++|.+.. + .       .+..+++++.|++.  +|.+++..  .+. .+++|+.|+
T Consensus       115 ~~~~~~~--~~~~~l~~L~~L~l~~n~l~~-~-~-------~l~~~~~L~~L~l~--~n~l~~l~--~l~-~l~~L~~L~  178 (199)
T d2omxa2         115 NNQITDI--DPLKNLTNLNRLELSSNTISD-I-S-------ALSGLTSLQQLNFS--SNQVTDLK--PLA-NLTTLERLD  178 (199)
T ss_dssp             SSCCCCC--GGGTTCTTCSEEECCSSCCCC-C-G-------GGTTCTTCSEEECC--SSCCCCCG--GGT-TCTTCCEEE
T ss_pred             ccccccc--cccchhhhhHHhhhhhhhhcc-c-c-------cccccccccccccc--cccccCCc--ccc-CCCCCCEEE
Confidence            9987642  234444444     6676654 2 2       67788999999999  99987532  366 899999999


Q ss_pred             ccCCccCcccccchhhhhcCCCCCceE
Q 038163          156 LSYYTLGINSSETLNQGLCSLVHLQEL  182 (207)
Q Consensus       156 l~~n~~~~~~~i~~~~~~~~~~~L~~L  182 (207)
                      +++|.++   ++ +  .+..+++|+.|
T Consensus       179 ls~N~i~---~i-~--~l~~L~~L~~L  199 (199)
T d2omxa2         179 ISSNKVS---DI-S--VLAKLTNLESL  199 (199)
T ss_dssp             CCSSCCC---CC-G--GGGGCTTCSEE
T ss_pred             CCCCCCC---CC-c--cccCCCCCCcC
Confidence            9999998   77 4  47788888875

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=2.9e-14  Score=100.61  Aligned_cols=128  Identities=16%  Similarity=0.170  Sum_probs=102.8

Q ss_pred             hcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcCCCCCChHHHHhhcccccccCCcccceeccccccccCCCCC
Q 038163           41 IGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDDSPLHISLLQSIASIFPLLKNLSMIGCEVNGVIRGQDFPH  120 (207)
Q Consensus        41 ~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~n~~~~~~~~~~~~~~~~~~~  120 (207)
                      +.+...+++|++++|.++.. +   .....+++|++|++++|.+.                    .++        .+..
T Consensus        14 ~~n~~~lr~L~L~~n~I~~i-~---~~~~~l~~L~~L~Ls~N~i~--------------------~l~--------~~~~   61 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIPVI-E---NLGATLDQFDAIDFSDNEIR--------------------KLD--------GFPL   61 (162)
T ss_dssp             EECTTSCEEEECTTSCCCSC-C---CGGGGTTCCSEEECCSSCCC--------------------EEC--------CCCC
T ss_pred             ccCcCcCcEEECCCCCCCcc-C---ccccccccCCEEECCCCCCC--------------------ccC--------Cccc
Confidence            45777899999999999975 4   34567889999999999987                    232        6778


Q ss_pred             CCccceecccccccccCchhHHHHHhcCCCccEEEccCCccCcccccchh-hhhcCCCCCceEEecCCcCCCCc---ccc
Q 038163          121 SKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSLSYYTLGINSSETLN-QGLCSLVHLQELYIASNDLRGSL---PWC  196 (207)
Q Consensus       121 ~~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L~l~~n~~~~~~~i~~~-~~~~~~~~L~~L~l~~n~l~~~~---p~~  196 (207)
                      +++|++|+++  +|.++...+..+. .+++|+.|++++|.+.   .+ +. ..+..+++|+.|++++|++....   +..
T Consensus        62 l~~L~~L~ls--~N~i~~l~~~~~~-~l~~L~~L~L~~N~i~---~~-~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~  134 (162)
T d1a9na_          62 LRRLKTLLVN--NNRICRIGEGLDQ-ALPDLTELILTNNSLV---EL-GDLDPLASLKSLTYLCILRNPVTNKKHYRLYV  134 (162)
T ss_dssp             CSSCCEEECC--SSCCCEECSCHHH-HCTTCCEEECCSCCCC---CG-GGGGGGGGCTTCCEEECCSSGGGGSTTHHHHH
T ss_pred             Ccchhhhhcc--cccccCCCccccc-cccccccceecccccc---cc-ccccccccccccchhhcCCCccccccchHHHH
Confidence            8999999999  9999855455556 7999999999999998   44 32 26788999999999999987432   235


Q ss_pred             ccCCCCCccCC
Q 038163          197 MANMTSLRILD  207 (207)
Q Consensus       197 ~~~l~~L~~l~  207 (207)
                      +..+|+|+.||
T Consensus       135 i~~lp~L~~LD  145 (162)
T d1a9na_         135 IYKVPQVRVLD  145 (162)
T ss_dssp             HHHCTTCSEET
T ss_pred             HHHCCCcCeeC
Confidence            78899999876

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.48  E-value=5.4e-13  Score=98.82  Aligned_cols=154  Identities=13%  Similarity=0.134  Sum_probs=112.0

Q ss_pred             CCCCccCceecCccccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcC
Q 038163            1 MSFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLD   80 (207)
Q Consensus         1 l~~n~~~~~~p~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~   80 (207)
                      +++|.+. .++ . +.++++|++|++++|.+  .. ++ .+..+++++++++++|.++..     ..+..++.|++++++
T Consensus        48 l~~~~i~-~l~-~-l~~l~~L~~L~ls~n~i--~~-~~-~l~~l~~l~~l~~~~n~~~~i-----~~l~~l~~L~~l~l~  115 (227)
T d1h6ua2          48 AFGTGVT-TIE-G-VQYLNNLIGLELKDNQI--TD-LA-PLKNLTKITELELSGNPLKNV-----SAIAGLQSIKTLDLT  115 (227)
T ss_dssp             CTTSCCC-CCT-T-GGGCTTCCEEECCSSCC--CC-CG-GGTTCCSCCEEECCSCCCSCC-----GGGTTCTTCCEEECT
T ss_pred             CCCCCCC-cch-h-HhcCCCCcEeecCCcee--ec-cc-ccccccccccccccccccccc-----ccccccccccccccc
Confidence            4567777 454 3 68999999999999999  33 33 378999999999999988753     367788899999998


Q ss_pred             CCCCChHHH-Hhh-------------------cc---cccc--cCCcccceeccccccccCCCCCCCccceecccccccc
Q 038163           81 DSPLHISLL-QSI-------------------AS---IFPL--LKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIA  135 (207)
Q Consensus        81 ~~~~~~~~~-~~l-------------------~~---l~~L--~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~  135 (207)
                      ++...+... ...                   ..   +..|  .+|.+..         ...+.++++|+.|+++  +|.
T Consensus       116 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~---------~~~l~~l~~L~~L~Ls--~n~  184 (227)
T d1h6ua2         116 STQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSD---------LTPLANLSKLTTLKAD--DNK  184 (227)
T ss_dssp             TSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCC---------CGGGTTCTTCCEEECC--SSC
T ss_pred             cccccccchhccccchhhhhchhhhhchhhhhcccccccccccccccccc---------chhhcccccceecccC--CCc
Confidence            887653211 011                   11   1111  2232222         1156788999999999  999


Q ss_pred             cCchhHHHHHhcCCCccEEEccCCccCcccccchhhhhcCCCCCceEEecC
Q 038163          136 LNTSFLQIISESMSSLKYLSLSYYTLGINSSETLNQGLCSLVHLQELYIAS  186 (207)
Q Consensus       136 ~~~~~~~~l~~~~~~L~~L~l~~n~~~~~~~i~~~~~~~~~~~L~~L~l~~  186 (207)
                      +++ ++ .+. .+++|++|++++|.++   .+ +  .++.+++|+.|++++
T Consensus       185 l~~-l~-~l~-~l~~L~~L~Ls~N~lt---~i-~--~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         185 ISD-IS-PLA-SLPNLIEVHLKNNQIS---DV-S--PLANTSNLFIVTLTN  226 (227)
T ss_dssp             CCC-CG-GGG-GCTTCCEEECTTSCCC---BC-G--GGTTCTTCCEEEEEE
T ss_pred             cCC-Ch-hhc-CCCCCCEEECcCCcCC---CC-c--ccccCCCCCEEEeeC
Confidence            875 32 366 8999999999999998   77 5  478999999999874

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=9.4e-14  Score=106.58  Aligned_cols=174  Identities=20%  Similarity=0.188  Sum_probs=104.8

Q ss_pred             cCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcCCC-CCChHHHHh---
Q 038163           16 NGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDDS-PLHISLLQS---   91 (207)
Q Consensus        16 ~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~~~-~~~~~~~~~---   91 (207)
                      ....+|++||++++.+. ...+...+..+++|++|++.++.+++..+   ..+.++++|++|++++| .+++.....   
T Consensus        43 ~~~~~L~~LdLs~~~i~-~~~l~~l~~~c~~L~~L~L~~~~l~~~~~---~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~  118 (284)
T d2astb2          43 FSPFRVQHMDLSNSVIE-VSTLHGILSQCSKLQNLSLEGLRLSDPIV---NTLAKNSNLVRLNLSGCSGFSEFALQTLLS  118 (284)
T ss_dssp             CCCBCCCEEECTTCEEC-HHHHHHHHTTBCCCSEEECTTCBCCHHHH---HHHTTCTTCSEEECTTCBSCCHHHHHHHHH
T ss_pred             ccCCCCCEEECCCCccC-HHHHHHHHHhCCCcccccccccCCCcHHH---HHHhcCCCCcCccccccccccccccchhhH
Confidence            45567888899888872 12355567788889999998888877666   67778888899998885 566543332   


Q ss_pred             -hcccccc--cCC-cccce-eccccccccCCCC-CCCccceeccccccc--ccCchhHHHHHhcCCCccEEEccCCc-cC
Q 038163           92 -IASIFPL--LKN-LSMIG-CEVNGVIRGQDFP-HSKSLEHLDMEFMRI--ALNTSFLQIISESMSSLKYLSLSYYT-LG  162 (207)
Q Consensus        92 -l~~l~~L--~~n-~~~~~-~~~~~~~~~~~~~-~~~~L~~L~l~~~~n--~~~~~~~~~l~~~~~~L~~L~l~~n~-~~  162 (207)
                       ...++.|  +++ .++.. +..       .+. .++.|+.|+++  ++  .+++.....+...+++|++|++++|. ++
T Consensus       119 ~~~~L~~L~ls~c~~~~~~~~~~-------~~~~~~~~L~~L~l~--~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~it  189 (284)
T d2astb2         119 SCSRLDELNLSWCFDFTEKHVQV-------AVAHVSETITQLNLS--GYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLK  189 (284)
T ss_dssp             HCTTCCEEECCCCTTCCHHHHHH-------HHHHSCTTCCEEECC--SCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCC
T ss_pred             HHHhccccccccccccccccchh-------hhcccccccchhhhc--ccccccccccccccccccccccccccccccCCC
Confidence             2334444  332 22221 111       111 23567777777  54  34433333332267777777777654 44


Q ss_pred             cccccchhhhhcCCCCCceEEecCC-cCCCCccccccCCCCCccC
Q 038163          163 INSSETLNQGLCSLVHLQELYIASN-DLRGSLPWCMANMTSLRIL  206 (207)
Q Consensus       163 ~~~~i~~~~~~~~~~~L~~L~l~~n-~l~~~~p~~~~~l~~L~~l  206 (207)
                        +.. .. .+..+++|++|++++| .+++.....++++++|+.|
T Consensus       190 --d~~-~~-~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L  230 (284)
T d2astb2         190 --NDC-FQ-EFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTL  230 (284)
T ss_dssp             --GGG-GG-GGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEE
T ss_pred             --chh-hh-hhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEE
Confidence              333 33 5666777777777775 4554444556666766655

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.47  E-value=1.2e-13  Score=93.14  Aligned_cols=40  Identities=25%  Similarity=0.291  Sum_probs=16.6

Q ss_pred             cCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCC
Q 038163           16 NGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFT   58 (207)
Q Consensus        16 ~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~   58 (207)
                      .++++|++|++++|.+   ..+|..+..+++|+.|++++|.++
T Consensus        17 ~~l~~L~~L~ls~N~l---~~lp~~~~~l~~L~~L~l~~N~i~   56 (124)
T d1dcea3          17 EQLLLVTHLDLSHNRL---RALPPALAALRCLEVLQASDNALE   56 (124)
T ss_dssp             GGGTTCCEEECCSSCC---CCCCGGGGGCTTCCEEECCSSCCC
T ss_pred             ccCCCCCEEECCCCcc---Ccchhhhhhhhccccccccccccc
Confidence            3444444444444444   223333444444444444444443

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=2.5e-14  Score=109.87  Aligned_cols=186  Identities=20%  Similarity=0.186  Sum_probs=127.4

Q ss_pred             CCCCccCceecCccccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCC-cCCcccccchhcccCCCCccEEEc
Q 038163            1 MSFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSN-NFTETVTITTQELHNFTNMEYLKL   79 (207)
Q Consensus         1 l~~n~~~~~~p~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n-~~~~~~~~~~~~l~~l~~L~~L~l   79 (207)
                      |+++.+........+..+++|++|+++++.+  ....+..+..+++|++|++++| .+++..-.  .....+++|++|++
T Consensus        53 Ls~~~i~~~~l~~l~~~c~~L~~L~L~~~~l--~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~--~l~~~~~~L~~L~l  128 (284)
T d2astb2          53 LSNSVIEVSTLHGILSQCSKLQNLSLEGLRL--SDPIVNTLAKNSNLVRLNLSGCSGFSEFALQ--TLLSSCSRLDELNL  128 (284)
T ss_dssp             CTTCEECHHHHHHHHTTBCCCSEEECTTCBC--CHHHHHHHTTCTTCSEEECTTCBSCCHHHHH--HHHHHCTTCCEEEC
T ss_pred             CCCCccCHHHHHHHHHhCCCcccccccccCC--CcHHHHHHhcCCCCcCccccccccccccccc--hhhHHHHhcccccc
Confidence            3455565544445678899999999999999  5678888999999999999996 55543210  12346899999999


Q ss_pred             CCCC-CChHHH-Hhh----cccccc--cCC--cccce-eccccccccCCCCCCCccceeccccccc-ccCchhHHHHHhc
Q 038163           80 DDSP-LHISLL-QSI----ASIFPL--LKN--LSMIG-CEVNGVIRGQDFPHSKSLEHLDMEFMRI-ALNTSFLQIISES  147 (207)
Q Consensus        80 ~~~~-~~~~~~-~~l----~~l~~L--~~n--~~~~~-~~~~~~~~~~~~~~~~~L~~L~l~~~~n-~~~~~~~~~l~~~  147 (207)
                      ++|. ++.... ..+    ..++.|  .++  .++.. +..       ...++++|++|+++  +| .+++..+..+. .
T Consensus       129 s~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~-------l~~~~~~L~~L~L~--~~~~itd~~~~~l~-~  198 (284)
T d2astb2         129 SWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLST-------LVRRCPNLVHLDLS--DSVMLKNDCFQEFF-Q  198 (284)
T ss_dssp             CCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHH-------HHHHCTTCSEEECT--TCTTCCGGGGGGGG-G
T ss_pred             ccccccccccchhhhcccccccchhhhcccccccccccccc-------cccccccccccccc--cccCCCchhhhhhc-c
Confidence            9974 554332 222    234444  221  22221 121       23468899999999  76 57877778888 8


Q ss_pred             CCCccEEEccCC-ccCcccccchhhhhcCCCCCceEEecCCcCCCCccccccCCCCCc
Q 038163          148 MSSLKYLSLSYY-TLGINSSETLNQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLR  204 (207)
Q Consensus       148 ~~~L~~L~l~~n-~~~~~~~i~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~  204 (207)
                      +++|++|++++| .++  +.. .. .+..+++|+.|+++++.-.+.+......+|+|+
T Consensus       199 ~~~L~~L~L~~C~~i~--~~~-l~-~L~~~~~L~~L~l~~~~~d~~l~~l~~~lp~L~  252 (284)
T d2astb2         199 LNYLQHLSLSRCYDII--PET-LL-ELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQ  252 (284)
T ss_dssp             CTTCCEEECTTCTTCC--GGG-GG-GGGGCTTCCEEECTTSSCTTCHHHHHHHSTTSE
T ss_pred             cCcCCEEECCCCCCCC--hHH-HH-HHhcCCCCCEEeeeCCCCHHHHHHHHHhCcccc
Confidence            999999999996 465  343 44 678899999999999833333334345566665

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.45  E-value=3.7e-13  Score=90.64  Aligned_cols=121  Identities=19%  Similarity=0.200  Sum_probs=93.7

Q ss_pred             cEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcCCCCCChHHHHhhcccccccCC
Q 038163           22 KSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDDSPLHISLLQSIASIFPLLKN  101 (207)
Q Consensus        22 ~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~n  101 (207)
                      ++|++++|.+   ..++ .+..+++|++|++++|.++. +|   ..+..+++|++|++++|.++                
T Consensus         1 R~L~Ls~n~l---~~l~-~l~~l~~L~~L~ls~N~l~~-lp---~~~~~l~~L~~L~l~~N~i~----------------   56 (124)
T d1dcea3           1 RVLHLAHKDL---TVLC-HLEQLLLVTHLDLSHNRLRA-LP---PALAALRCLEVLQASDNALE----------------   56 (124)
T ss_dssp             SEEECTTSCC---SSCC-CGGGGTTCCEEECCSSCCCC-CC---GGGGGCTTCCEEECCSSCCC----------------
T ss_pred             CEEEcCCCCC---CCCc-ccccCCCCCEEECCCCccCc-ch---hhhhhhhccccccccccccc----------------
Confidence            5799999999   3444 47899999999999999986 56   57889999999999999987                


Q ss_pred             cccceeccccccccCCCCCCCccceecccccccccCchh-HHHHHhcCCCccEEEccCCccCcccccchhhhhcCCCCCc
Q 038163          102 LSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSF-LQIISESMSSLKYLSLSYYTLGINSSETLNQGLCSLVHLQ  180 (207)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~~-~~~l~~~~~~L~~L~l~~n~~~~~~~i~~~~~~~~~~~L~  180 (207)
                          .++        .+..+++|++++++  +|.++... ...+. .+++|+.+++++|.+.....+ +......+++++
T Consensus        57 ----~l~--------~~~~l~~L~~L~l~--~N~i~~~~~~~~l~-~~~~L~~L~l~~N~i~~~~~~-~~~l~~~lp~L~  120 (124)
T d1dcea3          57 ----NVD--------GVANLPRLQELLLC--NNRLQQSAAIQPLV-SCPRLVLLNLQGNSLCQEEGI-QERLAEMLPSVS  120 (124)
T ss_dssp             ----CCG--------GGTTCSSCCEEECC--SSCCCSSSTTGGGG-GCTTCCEEECTTSGGGGSSSC-TTHHHHHCTTCS
T ss_pred             ----ccC--------ccccccccCeEECC--CCccCCCCCchhhc-CCCCCCEEECCCCcCCcCccH-HHHHHHHCcCcc
Confidence                222        56778899999999  99987432 34566 889999999999998722233 332445567776


Q ss_pred             eE
Q 038163          181 EL  182 (207)
Q Consensus       181 ~L  182 (207)
                      .+
T Consensus       121 ~L  122 (124)
T d1dcea3         121 SI  122 (124)
T ss_dssp             EE
T ss_pred             eE
Confidence            65

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.42  E-value=2.8e-15  Score=109.37  Aligned_cols=145  Identities=21%  Similarity=0.259  Sum_probs=88.0

Q ss_pred             CcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcCCCCCChHHHHhhcccccccC
Q 038163           21 LKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDDSPLHISLLQSIASIFPLLK  100 (207)
Q Consensus        21 L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~  100 (207)
                      .+.+++++..-. ...++..+..+++|++|++++|.++.. +    .+..+++|++|++++|.+..              
T Consensus        25 ~~~~~l~~~~~~-i~~l~~sl~~L~~L~~L~Ls~n~I~~i-~----~l~~l~~L~~L~Ls~N~i~~--------------   84 (198)
T d1m9la_          25 AEKVELHGMIPP-IEKMDATLSTLKACKHLALSTNNIEKI-S----SLSGMENLRILSLGRNLIKK--------------   84 (198)
T ss_dssp             CSCEECCBCCTT-CCCCHHHHHHTTTCCEEECSEEEESCC-C----CHHHHTTCCEEECCEEEECS--------------
T ss_pred             cceeeeecccCc-hhhhhhHHhcccccceeECcccCCCCc-c----cccCCccccChhhccccccc--------------
Confidence            445566544210 155677788888888888888888753 3    46677888888888887651              


Q ss_pred             CcccceeccccccccCCCCCCCccceecccccccccCchhHHHHHhcCCCccEEEccCCccCcccccchh-hhhcCCCCC
Q 038163          101 NLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSLSYYTLGINSSETLN-QGLCSLVHL  179 (207)
Q Consensus       101 n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L~l~~n~~~~~~~i~~~-~~~~~~~~L  179 (207)
                            ++.       ....++.|+.|+++  +|.++. + ..+. .+++|+.|++++|.++   .+ +. ..+..+++|
T Consensus        85 ------i~~-------~~~~~~~L~~L~l~--~N~i~~-l-~~~~-~l~~L~~L~L~~N~i~---~~-~~~~~l~~l~~L  142 (198)
T d1m9la_          85 ------IEN-------LDAVADTLEELWIS--YNQIAS-L-SGIE-KLVNLRVLYMSNNKIT---NW-GEIDKLAALDKL  142 (198)
T ss_dssp             ------CSS-------HHHHHHHCCEEECS--EEECCC-H-HHHH-HHHHSSEEEESEEECC---CH-HHHHHHTTTTTC
T ss_pred             ------ccc-------cccccccccccccc--cccccc-c-cccc-ccccccccccccchhc---cc-cccccccCCCcc
Confidence                  111       11123456777777  776663 2 2344 5666777777777776   43 31 246667777


Q ss_pred             ceEEecCCcCCCCccc----------cccCCCCCccCC
Q 038163          180 QELYIASNDLRGSLPW----------CMANMTSLRILD  207 (207)
Q Consensus       180 ~~L~l~~n~l~~~~p~----------~~~~l~~L~~l~  207 (207)
                      +.|++++|++....+.          .+..+|+|+.||
T Consensus       143 ~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         143 EDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             SEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred             ceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence            7777777766533221          145566666654

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.40  E-value=2.1e-12  Score=102.05  Aligned_cols=155  Identities=16%  Similarity=0.252  Sum_probs=120.1

Q ss_pred             CCCCccCceecCccccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcC
Q 038163            1 MSFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLD   80 (207)
Q Consensus         1 l~~n~~~~~~p~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~   80 (207)
                      +++|.+.. ++  .+..+++++.+++++|.+  . .++ .+..+++|++|+++++.+++. +    .+..+..++.++++
T Consensus       226 l~~n~l~~-~~--~l~~l~~L~~L~l~~n~l--~-~~~-~~~~~~~L~~L~l~~~~l~~~-~----~~~~~~~l~~l~~~  293 (384)
T d2omza2         226 LNGNQLKD-IG--TLASLTNLTDLDLANNQI--S-NLA-PLSGLTKLTELKLGANQISNI-S----PLAGLTALTNLELN  293 (384)
T ss_dssp             CCSSCCCC-CG--GGGGCTTCSEEECCSSCC--C-CCG-GGTTCTTCSEEECCSSCCCCC-G----GGTTCTTCSEEECC
T ss_pred             CCCCCCCC-cc--hhhcccccchhccccCcc--C-CCC-cccccccCCEeeccCcccCCC-C----cccccccccccccc
Confidence            45677764 43  368899999999999999  3 333 478899999999999998864 2    56788899999999


Q ss_pred             CCCCChHH-HHhhcccccc--cCCcccceeccccccccCCCCCCCccceecccccccccCchhHHHHHhcCCCccEEEcc
Q 038163           81 DSPLHISL-LQSIASIFPL--LKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSLS  157 (207)
Q Consensus        81 ~~~~~~~~-~~~l~~l~~L--~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L~l~  157 (207)
                      .|.+.+.. ...+..+..|  ++|.+++. +        .+..+++|++|+++  +|.+++ ++ .+. .+++|++|+++
T Consensus       294 ~n~l~~~~~~~~~~~l~~L~ls~n~l~~l-~--------~l~~l~~L~~L~L~--~n~l~~-l~-~l~-~l~~L~~L~l~  359 (384)
T d2omza2         294 ENQLEDISPISNLKNLTYLTLYFNNISDI-S--------PVSSLTKLQRLFFA--NNKVSD-VS-SLA-NLTNINWLSAG  359 (384)
T ss_dssp             SSCCSCCGGGGGCTTCSEEECCSSCCSCC-G--------GGGGCTTCCEEECC--SSCCCC-CG-GGG-GCTTCCEEECC
T ss_pred             ccccccccccchhcccCeEECCCCCCCCC-c--------ccccCCCCCEEECC--CCCCCC-Ch-hHc-CCCCCCEEECC
Confidence            99887421 2233344443  77777663 2        46778999999999  999975 33 577 89999999999


Q ss_pred             CCccCcccccchhhhhcCCCCCceEEecCC
Q 038163          158 YYTLGINSSETLNQGLCSLVHLQELYIASN  187 (207)
Q Consensus       158 ~n~~~~~~~i~~~~~~~~~~~L~~L~l~~n  187 (207)
                      +|.++   .+ +  .+.++++|+.|++++|
T Consensus       360 ~N~l~---~l-~--~l~~l~~L~~L~L~~N  383 (384)
T d2omza2         360 HNQIS---DL-T--PLANLTRITQLGLNDQ  383 (384)
T ss_dssp             SSCCC---BC-G--GGTTCTTCSEEECCCE
T ss_pred             CCcCC---CC-h--hhccCCCCCEeeCCCC
Confidence            99998   66 4  3788999999999987

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=8.9e-13  Score=98.32  Aligned_cols=181  Identities=14%  Similarity=0.101  Sum_probs=118.5

Q ss_pred             CccCceecCccccCCCCCcEEecCCCcccCCCcchh-hhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcCC-
Q 038163            4 NEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQ-SIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDD-   81 (207)
Q Consensus         4 n~~~~~~p~~~~~~l~~L~~L~ls~n~i~~~~~~~~-~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~~-   81 (207)
                      +++. .+|+..+   +++++|++++|.|   ..+|. .|.++++|++|++++|.+...++.  ..+..++.++++.+.. 
T Consensus        18 ~~l~-~iP~~l~---~~l~~L~Ls~n~i---~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~--~~f~~l~~l~~l~~~~~   88 (242)
T d1xwdc1          18 SKVT-EIPSDLP---RNAIELRFVLTKL---RVIQKGAFSGFGDLEKIEISQNDVLEVIEA--DVFSNLPKLHEIRIEKA   88 (242)
T ss_dssp             CSCS-SCCSCSC---SCCSEEEEESCCC---CEECTTTTTTCTTCCEEEEESCTTCCEECS--SSEESCTTCCEEEEECC
T ss_pred             CCCC-CcCCCCC---CCCCEEECcCCcC---CccChhHhhccchhhhhhhccccccceeec--ccccccccccccccccc
Confidence            4455 6776542   5789999999999   45554 688999999999999988765541  4677889999998754 


Q ss_pred             CCCChHHHHhhcccccc-----cCCcccceeccccccccCCCCCCCccceecccccccccCchhHHHHHhcCC-CccEEE
Q 038163           82 SPLHISLLQSIASIFPL-----LKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFLQIISESMS-SLKYLS  155 (207)
Q Consensus        82 ~~~~~~~~~~l~~l~~L-----~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~-~L~~L~  155 (207)
                      +.+....+..+..+++|     .++.+....+..      .+..+..+..+...  .+.+....+..+. .++ .++.++
T Consensus        89 n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~------~~~~l~~l~~~~~~--n~~l~~i~~~~~~-~~~~~l~~L~  159 (242)
T d1xwdc1          89 NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVH------KIHSLQKVLLDIQD--NINIHTIERNSFV-GLSFESVILW  159 (242)
T ss_dssp             TTCCEECTTSEECCTTCCEEEEESCCCCSCCCCT------TTCBSSCEEEEEES--CTTCCEECTTSST-TSBSSCEEEE
T ss_pred             ccccccccccccccccccccccchhhhccccccc------cccccccccccccc--ccccccccccccc-cccccceeee
Confidence            55654445555555555     555554422110      22334445444445  5455533333433 443 688899


Q ss_pred             ccCCccCcccccchhhhhcCCCCCceE-EecCCcCCCCccccccCCCCCccCC
Q 038163          156 LSYYTLGINSSETLNQGLCSLVHLQEL-YIASNDLRGSLPWCMANMTSLRILD  207 (207)
Q Consensus       156 l~~n~~~~~~~i~~~~~~~~~~~L~~L-~l~~n~l~~~~p~~~~~l~~L~~l~  207 (207)
                      +++|.++   .+ +. ......++..+ +++.|++....+..|..+++|++||
T Consensus       160 l~~n~l~---~i-~~-~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~  207 (242)
T d1xwdc1         160 LNKNGIQ---EI-HN-CAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILD  207 (242)
T ss_dssp             CCSSCCC---EE-CT-TTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEE
T ss_pred             ccccccc---cc-cc-ccccchhhhccccccccccccccHHHhcCCCCCCEEE
Confidence            9999998   77 65 44445565555 5677888754446789999998874

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.23  E-value=5.7e-14  Score=102.31  Aligned_cols=133  Identities=17%  Similarity=0.130  Sum_probs=98.5

Q ss_pred             cccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcCCCCCChHHHHhhc
Q 038163           14 GYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDDSPLHISLLQSIA   93 (207)
Q Consensus        14 ~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~   93 (207)
                      .+..+++|++|++++|.|   ..++ .+..+++|++|++++|.++.. +   .....++.|++|++++|.++..      
T Consensus        43 sl~~L~~L~~L~Ls~n~I---~~i~-~l~~l~~L~~L~Ls~N~i~~i-~---~~~~~~~~L~~L~l~~N~i~~l------  108 (198)
T d1m9la_          43 TLSTLKACKHLALSTNNI---EKIS-SLSGMENLRILSLGRNLIKKI-E---NLDAVADTLEELWISYNQIASL------  108 (198)
T ss_dssp             HHHHTTTCCEEECSEEEE---SCCC-CHHHHTTCCEEECCEEEECSC-S---SHHHHHHHCCEEECSEEECCCH------
T ss_pred             HHhcccccceeECcccCC---CCcc-cccCCccccChhhcccccccc-c---cccccccccccccccccccccc------
Confidence            467899999999999999   3444 578899999999999998864 4   2334456799999999998721      


Q ss_pred             ccccccCCcccceeccccccccCCCCCCCccceecccccccccCchh-HHHHHhcCCCccEEEccCCccCcccccchh--
Q 038163           94 SIFPLLKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSF-LQIISESMSSLKYLSLSYYTLGINSSETLN--  170 (207)
Q Consensus        94 ~l~~L~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~~-~~~l~~~~~~L~~L~l~~n~~~~~~~i~~~--  170 (207)
                                    +        .+..+++|++|+++  +|.++... ...+. .+++|+.|++++|.+.  ... +.  
T Consensus       109 --------------~--------~~~~l~~L~~L~L~--~N~i~~~~~~~~l~-~l~~L~~L~L~~N~l~--~~~-~~~~  160 (198)
T d1m9la_         109 --------------S--------GIEKLVNLRVLYMS--NNKITNWGEIDKLA-ALDKLEDLLLAGNPLY--NDY-KENN  160 (198)
T ss_dssp             --------------H--------HHHHHHHSSEEEES--EEECCCHHHHHHHT-TTTTCSEEEECSSHHH--HHH-CTTT
T ss_pred             --------------c--------cccccccccccccc--cchhcccccccccc-CCCccceeecCCCccc--cCc-cccc
Confidence                          1        34456789999999  99987532 25677 8999999999999875  211 11  


Q ss_pred             -------hhhcCCCCCceEEecCCcCC
Q 038163          171 -------QGLCSLVHLQELYIASNDLR  190 (207)
Q Consensus       171 -------~~~~~~~~L~~L~l~~n~l~  190 (207)
                             ..+..+++|+.||  +..+.
T Consensus       161 ~~~~~r~~vi~~lp~L~~LD--~~~I~  185 (198)
T d1m9la_         161 ATSEYRIEVVKRLPNLKKLD--GMPVD  185 (198)
T ss_dssp             THHHHHHHHHHHCSSCCEES--SGGGT
T ss_pred             chhhHHHHHHHHCCCcCEeC--CccCC
Confidence                   0256788999876  44444

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=4.1e-11  Score=83.59  Aligned_cols=111  Identities=20%  Similarity=0.186  Sum_probs=73.8

Q ss_pred             cCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCC-cCCcccccchhcccCCCCccEEEcCCCCCChHHHHhhcc
Q 038163           16 NGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSN-NFTETVTITTQELHNFTNMEYLKLDDSPLHISLLQSIAS   94 (207)
Q Consensus        16 ~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n-~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~   94 (207)
                      +.....+.++.+++.+   ...|..+..+++|++|++.++ .++...+   ..+..+++|++|++++|.++         
T Consensus         5 C~c~~~~~l~c~~~~~---~~~p~~l~~l~~l~~L~l~~n~~l~~i~~---~~f~~l~~L~~L~Ls~N~l~---------   69 (156)
T d2ifga3           5 CCPHGSSGLRCTRDGA---LDSLHHLPGAENLTELYIENQQHLQHLEL---RDLRGLGELRNLTIVKSGLR---------   69 (156)
T ss_dssp             SCCSSSSCEECCSSCC---CTTTTTSCSCSCCSEEECCSCSSCCEECG---GGSCSCCCCSEEECCSSCCC---------
T ss_pred             CCcCCCCeEEecCCCC---ccCcccccCccccCeeecCCCccccccCc---hhhccccccCcceeeccccC---------
Confidence            4455566677777777   456777777778888888655 4666555   56777788888888888776         


Q ss_pred             cccccCCcccceeccccccccCCCCCCCccceecccccccccCchhHHHHHhcCCCccEEEccCCccC
Q 038163           95 IFPLLKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSLSYYTLG  162 (207)
Q Consensus        95 l~~L~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L~l~~n~~~  162 (207)
                                 .++..      .|..+++|++|+++  +|.++ .++.... ....|+.|++++|.+.
T Consensus        70 -----------~i~~~------~f~~l~~L~~L~Ls--~N~l~-~l~~~~~-~~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          70 -----------FVAPD------AFHFTPRLSRLNLS--FNALE-SLSWKTV-QGLSLQELVLSGNPLH  116 (156)
T ss_dssp             -----------EECTT------GGGSCSCCCEEECC--SSCCS-CCCSTTT-CSCCCCEEECCSSCCC
T ss_pred             -----------Ccccc------cccccccccceecc--CCCCc-ccChhhh-ccccccccccCCCccc
Confidence                       22221      56677777788887  77776 3333333 3446777888777764

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.05  E-value=7.1e-10  Score=77.10  Aligned_cols=99  Identities=14%  Similarity=0.138  Sum_probs=77.3

Q ss_pred             CCccCceecCccccCCCCCcEEecCCC-cccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcCC
Q 038163            3 FNEINNLVVPQGYNGLRKLKSLDLSGV-GVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDD   81 (207)
Q Consensus         3 ~n~~~~~~p~~~~~~l~~L~~L~ls~n-~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~~   81 (207)
                      ++++. .+|.. +..++++++|+++++ .+  ...-+..|.++++|+.|++++|.++...+   ..+..+++|++|+|++
T Consensus        17 ~~~~~-~~p~~-l~~l~~l~~L~l~~n~~l--~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~---~~f~~l~~L~~L~Ls~   89 (156)
T d2ifga3          17 RDGAL-DSLHH-LPGAENLTELYIENQQHL--QHLELRDLRGLGELRNLTIVKSGLRFVAP---DAFHFTPRLSRLNLSF   89 (156)
T ss_dssp             SSCCC-TTTTT-SCSCSCCSEEECCSCSSC--CEECGGGSCSCCCCSEEECCSSCCCEECT---TGGGSCSCCCEEECCS
T ss_pred             CCCCc-cCccc-ccCccccCeeecCCCccc--cccCchhhccccccCcceeeccccCCccc---ccccccccccceeccC
Confidence            44555 35544 688999999999766 47  33344578999999999999999998877   7888999999999999


Q ss_pred             CCCChHHHHhhcccccccCCcccceeccccccccCCCCCCCccceecccccccccC
Q 038163           82 SPLHISLLQSIASIFPLLKNLSMIGCEVNGVIRGQDFPHSKSLEHLDMEFMRIALN  137 (207)
Q Consensus        82 ~~~~~~~~~~l~~l~~L~~n~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~  137 (207)
                      |.++                    .++.       .......|++|+++  +|++.
T Consensus        90 N~l~--------------------~l~~-------~~~~~~~l~~L~L~--~Np~~  116 (156)
T d2ifga3          90 NALE--------------------SLSW-------KTVQGLSLQELVLS--GNPLH  116 (156)
T ss_dssp             SCCS--------------------CCCS-------TTTCSCCCCEEECC--SSCCC
T ss_pred             CCCc--------------------ccCh-------hhhccccccccccC--CCccc
Confidence            9987                    3443       33334469999999  99885

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.04  E-value=1.5e-10  Score=90.42  Aligned_cols=70  Identities=17%  Similarity=0.215  Sum_probs=43.1

Q ss_pred             CCCCCCccceecccccccccCchh----HHHHHhcCCCccEEEccCCccCcccc--cchhhhhcC--CCCCceEEecCCc
Q 038163          117 DFPHSKSLEHLDMEFMRIALNTSF----LQIISESMSSLKYLSLSYYTLGINSS--ETLNQGLCS--LVHLQELYIASND  188 (207)
Q Consensus       117 ~~~~~~~L~~L~l~~~~n~~~~~~----~~~l~~~~~~L~~L~l~~n~~~~~~~--i~~~~~~~~--~~~L~~L~l~~n~  188 (207)
                      .+..+++|+.|+++  +|.++...    ...+. .+++|++|++++|.++..+.  + .. .+..  .+.|+.|++++|.
T Consensus       210 ~l~~~~~L~~L~Ls--~N~i~~~g~~~L~~~l~-~~~~L~~L~Ls~n~i~~~g~~~l-~~-~l~~~~~~~L~~L~ls~N~  284 (344)
T d2ca6a1         210 GLAYCQELKVLDLQ--DNTFTHLGSSALAIALK-SWPNLRELGLNDCLLSARGAAAV-VD-AFSKLENIGLQTLRLQYNE  284 (344)
T ss_dssp             TGGGCTTCCEEECC--SSCCHHHHHHHHHHHGG-GCTTCCEEECTTCCCCHHHHHHH-HH-HHHTCSSCCCCEEECCSSC
T ss_pred             hhcchhhhcccccc--ccccccccccccccccc-ccccchhhhhhcCccCchhhHHH-HH-HhhhccCCCCCEEECCCCc
Confidence            45567778888888  77776432    23445 67778888888887761111  1 11 2222  3567788888887


Q ss_pred             CCC
Q 038163          189 LRG  191 (207)
Q Consensus       189 l~~  191 (207)
                      +..
T Consensus       285 i~~  287 (344)
T d2ca6a1         285 IEL  287 (344)
T ss_dssp             CBH
T ss_pred             CCh
Confidence            764

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.89  E-value=6.6e-09  Score=80.36  Aligned_cols=68  Identities=25%  Similarity=0.268  Sum_probs=53.4

Q ss_pred             CCccceecccccccccCchhHHHHHhcCCCccEEEccCCccCcccccchhhhhcCCCCCceEEecCCcCCCCccccccCC
Q 038163          121 SKSLEHLDMEFMRIALNTSFLQIISESMSSLKYLSLSYYTLGINSSETLNQGLCSLVHLQELYIASNDLRGSLPWCMANM  200 (207)
Q Consensus       121 ~~~L~~L~l~~~~n~~~~~~~~~l~~~~~~L~~L~l~~n~~~~~~~i~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l  200 (207)
                      +++|++|+++  +|.++ .+|   . .+++|+.|++++|.++   .+ |.    .+++|+.|++++|++. .+|.....+
T Consensus       283 ~~~L~~L~Ls--~N~l~-~lp---~-~~~~L~~L~L~~N~L~---~l-~~----~~~~L~~L~L~~N~L~-~lp~~~~~L  346 (353)
T d1jl5a_         283 PPSLEELNVS--NNKLI-ELP---A-LPPRLERLIASFNHLA---EV-PE----LPQNLKQLHVEYNPLR-EFPDIPESV  346 (353)
T ss_dssp             CTTCCEEECC--SSCCS-CCC---C-CCTTCCEEECCSSCCS---CC-CC----CCTTCCEEECCSSCCS-SCCCCCTTC
T ss_pred             CCCCCEEECC--CCccC-ccc---c-ccCCCCEEECCCCcCC---cc-cc----ccCCCCEEECcCCcCC-CCCcccccc
Confidence            5789999999  99887 444   2 5678999999999998   77 64    2568999999999987 567666666


Q ss_pred             CCCc
Q 038163          201 TSLR  204 (207)
Q Consensus       201 ~~L~  204 (207)
                      +.|+
T Consensus       347 ~~L~  350 (353)
T d1jl5a_         347 EDLR  350 (353)
T ss_dssp             CEEE
T ss_pred             CeeE
Confidence            6554

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.80  E-value=5.5e-09  Score=81.33  Aligned_cols=167  Identities=13%  Similarity=0.137  Sum_probs=106.8

Q ss_pred             ccCCCCCcEEecCCCcccCCC--cch---------hhhcCCCCCCEEEcCCCcCCcccccc-hhcccCCCCccEEEcCCC
Q 038163           15 YNGLRKLKSLDLSGVGVRDGS--KLL---------QSIGSFSSLNSLYLSSNNFTETVTIT-TQELHNFTNMEYLKLDDS   82 (207)
Q Consensus        15 ~~~l~~L~~L~ls~n~i~~~~--~~~---------~~~~~l~~L~~L~l~~n~~~~~~~~~-~~~l~~l~~L~~L~l~~~   82 (207)
                      +...++|++|++++|.+.+..  .+.         ......+.|+.+++++|.++...... ...+..++.|++|++++|
T Consensus       117 l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n  196 (344)
T d2ca6a1         117 LSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQN  196 (344)
T ss_dssp             HHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSS
T ss_pred             hcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccchhhhhhhhcccccccc
Confidence            456788899999988753221  111         11235678888888888776432210 023456778888888888


Q ss_pred             CCChHHH-----Hhhcccccc-----cCCcccce----eccccccccCCCCCCCccceecccccccccCchhHHHHHh--
Q 038163           83 PLHISLL-----QSIASIFPL-----LKNLSMIG----CEVNGVIRGQDFPHSKSLEHLDMEFMRIALNTSFLQIISE--  146 (207)
Q Consensus        83 ~~~~~~~-----~~l~~l~~L-----~~n~~~~~----~~~~~~~~~~~~~~~~~L~~L~l~~~~n~~~~~~~~~l~~--  146 (207)
                      .+.....     ..+...+.|     ++|.++..    +..       .+..+++|+.|+++  +|.+++.....+.+  
T Consensus       197 ~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~-------~l~~~~~L~~L~Ls--~n~i~~~g~~~l~~~l  267 (344)
T d2ca6a1         197 GIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI-------ALKSWPNLRELGLN--DCLLSARGAAAVVDAF  267 (344)
T ss_dssp             CCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH-------HGGGCTTCCEEECT--TCCCCHHHHHHHHHHH
T ss_pred             cccccccccchhhhhcchhhhcccccccccccccccccccc-------cccccccchhhhhh--cCccCchhhHHHHHHh
Confidence            8875422     223333333     56665432    223       56778999999999  99998664443321  


Q ss_pred             -c--CCCccEEEccCCccCccc--ccchhhhh-cCCCCCceEEecCCcCCCC
Q 038163          147 -S--MSSLKYLSLSYYTLGINS--SETLNQGL-CSLVHLQELYIASNDLRGS  192 (207)
Q Consensus       147 -~--~~~L~~L~l~~n~~~~~~--~i~~~~~~-~~~~~L~~L~l~~n~l~~~  192 (207)
                       .  .+.|++|++++|.+...+  .+ .. .+ .+.++|+.|++++|++..+
T Consensus       268 ~~~~~~~L~~L~ls~N~i~~~~~~~l-~~-~l~~~~~~L~~L~l~~N~~~~~  317 (344)
T d2ca6a1         268 SKLENIGLQTLRLQYNEIELDAVRTL-KT-VIDEKMPDLLFLELNGNRFSEE  317 (344)
T ss_dssp             HTCSSCCCCEEECCSSCCBHHHHHHH-HH-HHHHHCTTCCEEECTTSBSCTT
T ss_pred             hhccCCCCCEEECCCCcCChHHHHHH-HH-HHHccCCCCCEEECCCCcCCCc
Confidence             3  357999999999987211  12 22 33 2578999999999998754

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.79  E-value=4.2e-08  Score=75.65  Aligned_cols=67  Identities=24%  Similarity=0.273  Sum_probs=43.9

Q ss_pred             CCCCccCceecCccccCCCCCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcC
Q 038163            1 MSFNEINNLVVPQGYNGLRKLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLD   80 (207)
Q Consensus         1 l~~n~~~~~~p~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~   80 (207)
                      |++|.++ .+|. .   .++|++|++++|.|   ..+|..   ..+|+.|++.+|.++.. +    .+.  +.|++|+++
T Consensus        45 Ls~~~L~-~lp~-~---~~~L~~L~Ls~N~l---~~lp~~---~~~L~~L~l~~n~l~~l-~----~lp--~~L~~L~L~  106 (353)
T d1jl5a_          45 LNNLGLS-SLPE-L---PPHLESLVASCNSL---TELPEL---PQSLKSLLVDNNNLKAL-S----DLP--PLLEYLGVS  106 (353)
T ss_dssp             CTTSCCS-CCCS-C---CTTCSEEECCSSCC---SSCCCC---CTTCCEEECCSSCCSCC-C----SCC--TTCCEEECC
T ss_pred             eCCCCCC-CCCC-C---CCCCCEEECCCCCC---cccccc---hhhhhhhhhhhcccchh-h----hhc--ccccccccc
Confidence            4677776 5773 2   56788889998888   456644   35677777777776642 2    111  347777777


Q ss_pred             CCCCC
Q 038163           81 DSPLH   85 (207)
Q Consensus        81 ~~~~~   85 (207)
                      +|.+.
T Consensus       107 ~n~l~  111 (353)
T d1jl5a_         107 NNQLE  111 (353)
T ss_dssp             SSCCS
T ss_pred             ccccc
Confidence            77765

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.61  E-value=3.1e-08  Score=78.92  Aligned_cols=165  Identities=16%  Similarity=0.126  Sum_probs=76.0

Q ss_pred             CCCCCcEEecCCCcccCCC--cchhhhcCCCCCCEEEcCCCcCCcccccch-hcc-cCCCCccEEEcCCCCCChHHHHhh
Q 038163           17 GLRKLKSLDLSGVGVRDGS--KLLQSIGSFSSLNSLYLSSNNFTETVTITT-QEL-HNFTNMEYLKLDDSPLHISLLQSI   92 (207)
Q Consensus        17 ~l~~L~~L~ls~n~i~~~~--~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~-~~l-~~l~~L~~L~l~~~~~~~~~~~~l   92 (207)
                      ....++.+++++|.+.+..  .....+...+.++.+++++|.++......+ ..+ .....|+.++++++.+.......+
T Consensus       253 ~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~~l~~~~~~~l  332 (460)
T d1z7xw1         253 PSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHF  332 (460)
T ss_dssp             TTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccchhhccccccccccccccccccchhhhhhhhc
Confidence            3455666666666551100  122223345566666666665543211000 011 123456666666666554332222


Q ss_pred             c-------ccccc--cCCcccce----eccccccccCCCC-CCCccceecccccccccCchh----HHHHHhcCCCccEE
Q 038163           93 A-------SIFPL--LKNLSMIG----CEVNGVIRGQDFP-HSKSLEHLDMEFMRIALNTSF----LQIISESMSSLKYL  154 (207)
Q Consensus        93 ~-------~l~~L--~~n~~~~~----~~~~~~~~~~~~~-~~~~L~~L~l~~~~n~~~~~~----~~~l~~~~~~L~~L  154 (207)
                      .       .+..|  ++|.+...    ++.       .+. ....|++|+++  +|.+++..    .+.+. .+++|++|
T Consensus       333 ~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~-------~l~~~~~~L~~L~Ls--~n~i~~~~~~~l~~~l~-~~~~L~~L  402 (460)
T d1z7xw1         333 SSVLAQNRFLLELQISNNRLEDAGVRELCQ-------GLGQPGSVLRVLWLA--DCDVSDSSCSSLAATLL-ANHSLREL  402 (460)
T ss_dssp             HHHHHHCSSCCEEECCSSBCHHHHHHHHHH-------HHTSTTCCCCEEECT--TSCCCHHHHHHHHHHHH-HCCCCCEE
T ss_pred             ccccccccchhhhheeeecccCcccchhhh-------hhhcccCCCCEEECC--CCCCChHHHHHHHHHHh-cCCCCCEE
Confidence            1       23333  44444321    111       222 23456677777  66666432    23344 55667777


Q ss_pred             EccCCccCcccccchh---hhhc-CCCCCceEEecCCcCCCCcc
Q 038163          155 SLSYYTLGINSSETLN---QGLC-SLVHLQELYIASNDLRGSLP  194 (207)
Q Consensus       155 ~l~~n~~~~~~~i~~~---~~~~-~~~~L~~L~l~~n~l~~~~p  194 (207)
                      ++++|.++  ++. ..   ..+. ....|+.|++.++.+..+..
T Consensus       403 ~Ls~N~i~--~~g-~~~l~~~l~~~~~~L~~l~l~~~~~~~~~~  443 (460)
T d1z7xw1         403 DLSNNCLG--DAG-ILQLVESVRQPGCLLEQLVLYDIYWSEEME  443 (460)
T ss_dssp             ECCSSSCC--HHH-HHHHHHHHTSTTCCCCEEECTTCCCCHHHH
T ss_pred             ECCCCcCC--HHH-HHHHHHHHHhCCCccCEEECCCCCCCHHHH
Confidence            77777665  221 11   0222 22356677777666654333

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.59  E-value=1.2e-08  Score=81.31  Aligned_cols=69  Identities=16%  Similarity=0.170  Sum_probs=45.8

Q ss_pred             CCcEEecCCCcccCCCcchhhhcCCCCCCEEEcCCCcCCcccccc-hhcccCCCCccEEEcCCCCCChHHH
Q 038163           20 KLKSLDLSGVGVRDGSKLLQSIGSFSSLNSLYLSSNNFTETVTIT-TQELHNFTNMEYLKLDDSPLHISLL   89 (207)
Q Consensus        20 ~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~   89 (207)
                      +|++||++++.+++ ..+.+.+..+++++.|+|.+|.++...... ...+..+++|++|+|++|.++....
T Consensus         3 ~l~~ld~~~~~i~~-~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~   72 (460)
T d1z7xw1           3 DIQSLDIQCEELSD-ARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGV   72 (460)
T ss_dssp             EEEEEEEESCCCCH-HHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHH
T ss_pred             CCCEEEeeCCcCCh-HHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHH
Confidence            47788888888842 334555666788888888888777432100 0345677888888888888765443

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.44  E-value=1e-08  Score=71.48  Aligned_cols=82  Identities=24%  Similarity=0.251  Sum_probs=60.6

Q ss_pred             CCCCccceecccccccccCch--hHHHHHhcCCCccEEEccCCccCcccccchhhhhcCCCCCceEEecCCcCCCCcc--
Q 038163          119 PHSKSLEHLDMEFMRIALNTS--FLQIISESMSSLKYLSLSYYTLGINSSETLNQGLCSLVHLQELYIASNDLRGSLP--  194 (207)
Q Consensus       119 ~~~~~L~~L~l~~~~n~~~~~--~~~~l~~~~~~L~~L~l~~n~~~~~~~i~~~~~~~~~~~L~~L~l~~n~l~~~~p--  194 (207)
                      ..++.|+.|+++  +|.++..  ++..+. .+++|+.|++++|.++   .+ +.....+...|+.+++++|++.....  
T Consensus        62 ~~~~~L~~L~Ls--~N~i~~l~~~~~~~~-~l~~L~~L~Ls~N~i~---~l-~~l~~l~~~~L~~L~L~~Npl~~~~~~~  134 (162)
T d1koha1          62 ENIPELLSLNLS--NNRLYRLDDMSSIVQ-KAPNLKILNLSGNELK---SE-RELDKIKGLKLEELWLDGNSLSDTFRDQ  134 (162)
T ss_dssp             HHCTTCCCCCCC--SSCCCCCSGGGTHHH-HSTTCCCCCCTTSCCC---CG-GGHHHHTTCCCSSCCCTTSTTSSSSSSH
T ss_pred             HhCCCCCEeeCC--CccccCCchhHHHHh-hCCcccccccccCccc---cc-hhhhhhhccccceeecCCCCcCcCcccc
Confidence            356789999999  9988753  345566 7899999999999998   55 33233445678999999999876433  


Q ss_pred             -----ccccCCCCCccCC
Q 038163          195 -----WCMANMTSLRILD  207 (207)
Q Consensus       195 -----~~~~~l~~L~~l~  207 (207)
                           ..+..+|+|+.||
T Consensus       135 ~~y~~~i~~~~P~L~~LD  152 (162)
T d1koha1         135 STYISAIRERFPKLLRLD  152 (162)
T ss_dssp             HHHHHHHHTTSTTCCEET
T ss_pred             hhHHHHHHHHCCCCCEEC
Confidence                 2356788888876

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.18  E-value=3.2e-06  Score=58.67  Aligned_cols=70  Identities=10%  Similarity=0.204  Sum_probs=30.0

Q ss_pred             CCCCcEEecCCC-cccCC--CcchhhhcCCCCCCEEEcCCCcCCcccccc-hhcccCCCCccEEEcCCCCCChH
Q 038163           18 LRKLKSLDLSGV-GVRDG--SKLLQSIGSFSSLNSLYLSSNNFTETVTIT-TQELHNFTNMEYLKLDDSPLHIS   87 (207)
Q Consensus        18 l~~L~~L~ls~n-~i~~~--~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~   87 (207)
                      .++|++|+|+++ .+.+.  ..+-..+...+.|+.|++++|.+....... ...+...+.|++|++++|.+...
T Consensus        14 ~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~   87 (167)
T d1pgva_          14 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPE   87 (167)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHH
T ss_pred             CCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchH
Confidence            455556666543 34100  012223444455555555555554321100 01223344555555555555543

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.09  E-value=4.9e-06  Score=57.71  Aligned_cols=124  Identities=12%  Similarity=0.071  Sum_probs=83.6

Q ss_pred             hhcCCCCCCEEEcCCC-cCCccccc-chhcccCCCCccEEEcCCCCCChHHHHhhcccccccCCcccceeccccccccCC
Q 038163           40 SIGSFSSLNSLYLSSN-NFTETVTI-TTQELHNFTNMEYLKLDDSPLHISLLQSIASIFPLLKNLSMIGCEVNGVIRGQD  117 (207)
Q Consensus        40 ~~~~l~~L~~L~l~~n-~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~n~~~~~~~~~~~~~~~~  117 (207)
                      ...+.+.|+.|+++++ .++...-. -+..+...+.|++|++++|.+.......+.               .       .
T Consensus        10 l~~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la---------------~-------~   67 (167)
T d1pgva_          10 LREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLI---------------E-------L   67 (167)
T ss_dssp             HHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHH---------------H-------H
T ss_pred             HHhCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHh---------------h-------h
Confidence            3455789999999874 56543110 014566788999999999999866544332               1       3


Q ss_pred             CCCCCccceecccccccccCchhHHHHHh---cCCCccEEEccCCccCccc-----ccchhhhhcCCCCCceEEecCCcC
Q 038163          118 FPHSKSLEHLDMEFMRIALNTSFLQIISE---SMSSLKYLSLSYYTLGINS-----SETLNQGLCSLVHLQELYIASNDL  189 (207)
Q Consensus       118 ~~~~~~L~~L~l~~~~n~~~~~~~~~l~~---~~~~L~~L~l~~n~~~~~~-----~i~~~~~~~~~~~L~~L~l~~n~l  189 (207)
                      +...+.|+.|+++  +|.++......+.+   ..++|++|++++|.+..-+     .+ .. .+...++|+.|+++.+..
T Consensus        68 L~~n~~L~~L~L~--~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l-~~-~L~~n~sL~~l~l~~~~~  143 (167)
T d1pgva_          68 IETSPSLRVLNVE--SNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDM-MM-AIEENESLLRVGISFASM  143 (167)
T ss_dssp             HHHCSSCCEEECC--SSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHH-HH-HHHHCSSCCEEECCCCCH
T ss_pred             hhhcccccceeee--hhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHHHHHH-HH-HHHhCCCccEeeCcCCCc
Confidence            3455789999999  99998665543331   4567999999988654101     13 33 566688999999987654

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.03  E-value=6.5e-07  Score=62.03  Aligned_cols=42  Identities=24%  Similarity=0.322  Sum_probs=18.5

Q ss_pred             CCCCCCEEEcCCCcCCcccccchhcccCCCCccEEEcCCCCCC
Q 038163           43 SFSSLNSLYLSSNNFTETVTITTQELHNFTNMEYLKLDDSPLH   85 (207)
Q Consensus        43 ~l~~L~~L~l~~n~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~   85 (207)
                      .+++|++|++++|.++...+.. ..+..+++|++|++++|.+.
T Consensus        63 ~~~~L~~L~Ls~N~i~~l~~~~-~~~~~l~~L~~L~Ls~N~i~  104 (162)
T d1koha1          63 NIPELLSLNLSNNRLYRLDDMS-SIVQKAPNLKILNLSGNELK  104 (162)
T ss_dssp             HCTTCCCCCCCSSCCCCCSGGG-THHHHSTTCCCCCCTTSCCC
T ss_pred             hCCCCCEeeCCCccccCCchhH-HHHhhCCcccccccccCccc
Confidence            4455555555555554331100 22334445555555555544

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.86  E-value=2.1e-05  Score=54.24  Aligned_cols=71  Identities=8%  Similarity=0.157  Sum_probs=29.9

Q ss_pred             CCCCCcEEecCC-CcccCCC--cchhhhcCCCCCCEEEcCCCcCCcccccc-hhcccCCCCccEEEcCCCCCChH
Q 038163           17 GLRKLKSLDLSG-VGVRDGS--KLLQSIGSFSSLNSLYLSSNNFTETVTIT-TQELHNFTNMEYLKLDDSPLHIS   87 (207)
Q Consensus        17 ~l~~L~~L~ls~-n~i~~~~--~~~~~~~~l~~L~~L~l~~n~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~   87 (207)
                      ..++|++|++++ +.+++..  .+-..+...++|+.|++++|.++...... ...+...+.++.+++++|.+...
T Consensus        15 ~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~   89 (166)
T d1io0a_          15 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGS   89 (166)
T ss_dssp             TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH
T ss_pred             cCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccch
Confidence            345555555554 2341100  12233334455555555555544321100 01223344555555555555433

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.83  E-value=1.3e-05  Score=55.39  Aligned_cols=125  Identities=16%  Similarity=0.085  Sum_probs=82.8

Q ss_pred             hhhhcCCCCCCEEEcCC-CcCCccccc-chhcccCCCCccEEEcCCCCCChHHHHhhcccccccCCcccceecccccccc
Q 038163           38 LQSIGSFSSLNSLYLSS-NNFTETVTI-TTQELHNFTNMEYLKLDDSPLHISLLQSIASIFPLLKNLSMIGCEVNGVIRG  115 (207)
Q Consensus        38 ~~~~~~l~~L~~L~l~~-n~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~n~~~~~~~~~~~~~~  115 (207)
                      .....+.+.|++|++++ +.++...-. -...+...++|++|++++|.+.......+.               .      
T Consensus        10 ~~~~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~---------------~------   68 (166)
T d1io0a_          10 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALA---------------E------   68 (166)
T ss_dssp             HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHH---------------H------
T ss_pred             HHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHH---------------H------
Confidence            33445679999999997 456543210 013556789999999999999876555442               1      


Q ss_pred             CCCCCCCccceecccccccccCchhHH----HHHhcCCCccEEEcc--CCccCccc--ccchhhhhcCCCCCceEEecCC
Q 038163          116 QDFPHSKSLEHLDMEFMRIALNTSFLQ----IISESMSSLKYLSLS--YYTLGINS--SETLNQGLCSLVHLQELYIASN  187 (207)
Q Consensus       116 ~~~~~~~~L~~L~l~~~~n~~~~~~~~----~l~~~~~~L~~L~l~--~n~~~~~~--~i~~~~~~~~~~~L~~L~l~~n  187 (207)
                       .+...+.++.+++.  +|.++.....    .+. ..++|+.+++.  +|.+..++  .+ .. .+...++|+.|+++.+
T Consensus        69 -~l~~~~~l~~l~l~--~~~~~~~g~~~l~~~l~-~~~~L~~l~L~l~~n~i~~~~~~~L-a~-~L~~n~~L~~L~l~~~  142 (166)
T d1io0a_          69 -MLKVNNTLKSLNVE--SNFISGSGILALVEALQ-SNTSLIELRIDNQSQPLGNNVEMEI-AN-MLEKNTTLLKFGYHFT  142 (166)
T ss_dssp             -HHHHCSSCCEEECC--SSCCCHHHHHHHHHGGG-GCSSCCEEECCCCSSCCCHHHHHHH-HH-HHHHCSSCCEEECCCS
T ss_pred             -HHhhcccchhhhhc--cccccchhHHHHHHHHH-hCccccEEeeccCCCcCcHHHHHHH-HH-HHHhCCCcCEEeCcCC
Confidence             33445678889999  8888765443    334 56778876664  56665222  23 33 5667899999999877


Q ss_pred             cC
Q 038163          188 DL  189 (207)
Q Consensus       188 ~l  189 (207)
                      ..
T Consensus       143 ~~  144 (166)
T d1io0a_         143 QQ  144 (166)
T ss_dssp             SH
T ss_pred             CC
Confidence            54