Citrus Sinensis ID: 038188

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380----
MSSALTDIASSMLMPEDVRLEILSRLPVKSLMRLRCVCKSWYALIENPKFISKHLENFNDENAHLMISYQVYDDNGPNSVTSLFKDKTLADLSYENIHRPISRELLGPYDGIFCLCDGGLITLWNPATKECRTLPNYKKNLPALATFLKRNAIFGLCDASGDYKVVFICKLWNEKIQDAYEHAHVAVYTSSTDSWRVSKGNIKWIPYVFESYYNNANLNGVFYWFVSRAGDFHSKLILLFRISDEEFQEIQRPCIPYTPFESLAPLNGSIALLHLDESNQYIEIWVMNEMNWIQQFAIGPFLGVKSPCGFWKNNAVLMESINGKLLLYDLVVQEMRDLGRFSSGELGAAILIYCYKESLIRLKGEEEDSLSDSFDIPWHIMGEY
cccccccccccccccHHHHHHHcccccHHHHHHHHcccHHHHHHcccHHHHHHHHHHccccccEEEEEEEEccccccccccccccccccccccccccccccccEEEEEEccEEEEEEccEEEEEccccccEEEcccccccccccccccEEEEEEEEccccccEEEEEEEEEccccccccccccEEEEEEcccccEEEEccccccccEEEEcccccEEEccEEEEEEEEcccccccEEEEEEccccEEEEEcccccccccccEEEEEccEEEEEEEEccccEEEEEEEccccEEEEEEEcccccccccEEEEEcccEEEEEEccEEEEEEccccEEEEEEEEcccccccEEEEEEEEccEEccccccccccEEcccccEEEEEcc
ccHHHHcccccccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHccccccEEEEEEEEEccccccccccccccccccccccccccccEEEEEEEcccEEEEEEccccEEEEccccccEEEcccccccccccccEEEEEEEEccccccccEEEEEEEEEcccccccccccEEEEEEEcccccEEEEEccccccccccccccccEEEEcEEEEEEEEccccccEEEEEEEcccccccccccccccccccEEEEEEccEEEEEEEcccccEEEEEEEEccccccEEEEcccccEccccEEEcccEEEEEccccEEEEEEccccEEEEEEEEEcccccccEEEEEEcccEEEEcccccccccccccccEEEEEcc
MSSALTDIassmlmpeDVRLEILSRLPVKSLMRLRCVCKSWyalienpkFISKHLENFNDENAHLMISYQvyddngpnsvtslfkdktladlsyenihrpisrellgpydgifclcdgglitlwnpatkecrtlpnykknlPALATFLKRNAIfglcdasgdYKVVFICKLWNEKIQDAYEHAHVAVYTsstdswrvskgnikwiPYVFESYYNNANLNGVFYWFVSRAGDFHSKLILLFRISDeefqeiqrpcipytpfeslaplngsIALLHLDESNQYIEIWVMNEMNWIQQfaigpflgvkspcgfwkNNAVLMESINGKLLLYDLVVQEMRDlgrfssgeLGAAILIYCYKESLirlkgeeedslsdsfdipwhimgey
mssaltdiassmlmpedVRLEILsrlpvkslMRLRCVCKSWYALIENPKFISKHLENFNDENAHLMISYQVYDDNGPNSVTSLFKDKTLADLSYENIHRPISRELLGPYDGIFCLCDGGLITLWNPATKECRTLPNYKKNLPALATFLKRNAIFGLCDASGDYKVVFICKLWNEKIQDAYEHAHVAVYtsstdswrvskGNIKWIPYVFESYYNNANLNGVFYWFVSRAGDFHSKLILLFRISDEEFQEIQRPCIPYTPFESLAPLNGSIALLHLDESNQYIEIWVMNEMNWIQQFAIGPFLGVKSPCGFWKNNAVLMESINGKLLLYDLVVQEMRDLGRFSSGELGAAILIYCYKESLIRLKgeeedslsdsfdipwhimgey
MSSALTDIASSMLMPEDVRLEILSRLPVKSLMRLRCVCKSWYALIENPKFISKHLENFNDENAHLMISYQVYDDNGPNSVTSLFKDKTLADLSYENIHRPISRELLGPYDGIFCLCDGGLITLWNPATKECRTLPNYKKNLPALATFLKRNAIFGLCDASGDYKVVFICKLWNEKIQDAYEHAHVAVYTSSTDSWRVSKGNIKWIPYVFESYYNNANLNGVFYWFVSRAGDFHSKLILLFRISDEEFQEIQRPCIPYTPFESLAPLNGSIALLHLDESNQYIEIWVMNEMNWIQQFAIGPFLGVKSPCGFWKNNAVLMESINGKLLLYDLVVQEMRDLGRFSSGELGAAILIYCYKESLIRLKGEEEDSLSDSFDIPWHIMGEY
****************DVRLEILSRLPVKSLMRLRCVCKSWYALIENPKFISKHLENFNDENAHLMISYQVYDDNGPNSVTSLFKDKTLADLSYENIHRPISRELLGPYDGIFCLCDGGLITLWNPATKECRTLPNYKKNLPALATFLKRNAIFGLCDASGDYKVVFICKLWNEKIQDAYEHAHVAVYTSSTDSWRVSKGNIKWIPYVFESYYNNANLNGVFYWFVSRAGDFHSKLILLFRISDEEFQEIQRPCIPYTPFESLAPLNGSIALLHLDESNQYIEIWVMNEMNWIQQFAIGPFLGVKSPCGFWKNNAVLMESINGKLLLYDLVVQEMRDLGRFSSGELGAAILIYCYKESLIRLK**********FDIPWHI****
****************DVRLEILSRLPVKSLMRLRCVCKSWYALIENPKFISKHLENFNDENAHLMISYQVYDDNGPNSVTSLFKDKTLADLSYENIHRPISRELLGPYDGIFCLCDGGLITLWNPATKECRTLPNYKKNLPALATFLKRNAIFGLCDASGDYKVVFICKLWNEKIQDAYEHAHVAVYTSSTDSWRVSKGNIKWIPYVFESYYNNANLNGVFYWFVSRAGDFHSKLILLFRISDEEFQEIQRPCIPYTPFESLAPLNGSIALLHLDESNQYIEIWVMNEMNWIQQFAIGPFLGVKSPCGFWKNNAVLMESINGKLLLYDLVVQEMRDLGRFSSGELGAAILIYCYKESLIRL***************WHIMGEY
MSSALTDIASSMLMPEDVRLEILSRLPVKSLMRLRCVCKSWYALIENPKFISKHLENFNDENAHLMISYQVYDDNGPNSVTSLFKDKTLADLSYENIHRPISRELLGPYDGIFCLCDGGLITLWNPATKECRTLPNYKKNLPALATFLKRNAIFGLCDASGDYKVVFICKLWNEKIQDAYEHAHVAVYTSSTDSWRVSKGNIKWIPYVFESYYNNANLNGVFYWFVSRAGDFHSKLILLFRISDEEFQEIQRPCIPYTPFESLAPLNGSIALLHLDESNQYIEIWVMNEMNWIQQFAIGPFLGVKSPCGFWKNNAVLMESINGKLLLYDLVVQEMRDLGRFSSGELGAAILIYCYKESLIRLKGEEEDSLSDSFDIPWHIMGEY
**********SMLMPEDVRLEILSRLPVKSLMRLRCVCKSWYALIENPKFISKHLENFNDENAHLMISYQVYDDNGPNSVTSLFKDKTLADLSYENIHRPISRELLGPYDGIFCLCDGGLITLWNPATKECRTLPNYKKNLPALATFLKRNAIFGLCDASGDYKVVFICKLWNEKIQDAYEHAHVAVYTSSTDSWRVSKGNIKWIPYVFESYYNNANLNGVFYWFVSRAGDFHSKLILLFRISDEEFQEIQRPCIPYTPFESLAPLNGSIALLHLDESNQYIEIWVMNEMNWIQQFAIGPFLGVKSPCGFWKNNAVLMESINGKLLLYDLVVQEMRDLGRFSSGELGAAILIYCYKESLIRLKGE*******SFDIPWHIMGEY
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MSSALTDIASSMLMPEDVRLEILSRLPVKSLMRLRCVCKSWYALIENPKFISKHLENFNDENAHLMISYQVYDDNGPNSVTSLFKDKTLADLSYENIHRPISRELLGPYDGIFCLCDGGLITLWNPATKECRTLPNYKKNLPALATFLKRNAIFGLCDASGDYKVVFICKLWNEKIQDAYEHAHVAVYTSSTDSWRVSKGNIKWIPYVFESYYNNANLNGVFYWFVSRAGDFHSKLILLFRISDEEFQEIQRPCIPYTPFESLAPLNGSIALLHLDESNQYIEIWVMNEMNWIQQFAIGPFLGVKSPCGFWKNNAVLMESINGKLLLYDLVVQEMRDLGRFSSGELGAAILIYCYKESLIRLKGEEEDSLSDSFDIPWHIMGEY
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query384 2.2.26 [Sep-21-2011]
Q9SU30413 F-box protein CPR30 OS=Ar yes no 0.898 0.835 0.259 8e-17
Q9C9Y4369 F-box protein At3g08750 O no no 0.653 0.680 0.265 2e-15
Q8GXC7427 F-box/kelch-repeat protei no no 0.869 0.782 0.248 1e-14
Q3ECE2369 Putative F-box protein At no no 0.684 0.712 0.267 4e-13
Q9LU24360 Putative F-box protein At no no 0.526 0.561 0.290 2e-12
Q9C6J3396 Putative F-box protein At no no 0.666 0.646 0.227 3e-12
Q9LUP1381 Putative F-box/kelch-repe no no 0.567 0.572 0.293 4e-12
Q9LVS9416 Probable F-box protein At no no 0.705 0.651 0.254 5e-12
Q9SUY0402 F-box protein At4g22390 O no no 0.851 0.813 0.234 5e-12
Q9T0J4426 Putative F-box protein At no no 0.700 0.631 0.237 6e-12
>sp|Q9SU30|CPR30_ARATH F-box protein CPR30 OS=Arabidopsis thaliana GN=CPR30 PE=1 SV=2 Back     alignment and function desciption
 Score = 88.2 bits (217), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 104/401 (25%), Positives = 176/401 (43%), Gaps = 56/401 (13%)

Query: 14  MPEDVRLEILSRLPVKSLMRLRCVCKSWYALIENPKFISKHLENFNDENAHLMISYQVYD 73
           +P D+  +I  RLP K+L+R R + K  Y LI +P FI  HL        HLMI  +   
Sbjct: 4   IPMDIVNDIFLRLPAKTLVRCRALSKPCYHLINDPDFIESHLHRVLQTGDHLMILLR--- 60

Query: 74  DNGPNSVTSLFKDKTLADLSYENIHRPISR----ELLGPYDGIFCLCDGGL-ITLWNPAT 128
                    L+     +  S  ++  P+ R    E+ G  +G+  L +    + ++NP+T
Sbjct: 61  -----GALRLYSVDLDSLDSVSDVEHPMKRGGPTEVFGSSNGLIGLSNSPTDLAVFNPST 115

Query: 129 KECRTLPNYKKNLPALATFLKRNAIF---GLCDASGDYKVVFICKLWNEKIQDAYEHA-- 183
           ++   LP    +LP  ++   R  +F   G    S DYKVV + +    KI    E    
Sbjct: 116 RQIHRLPPSSIDLPDGSS--TRGYVFYGLGYDSVSDDYKVVRMVQF---KIDSEDELGCS 170

Query: 184 ---HVAVYTSSTDSWRVSKGNIKWIPYVFESYYNNANLNGV-------FYWFV-SRAGDF 232
               V V++   +SW+  +     I  +F  YY+     G         +W +  R G  
Sbjct: 171 FPYEVKVFSLKKNSWKRIESVASSIQLLFYFYYHLLYRRGYGVLAGNSLHWVLPRRPGLI 230

Query: 233 HSKLILLFRISDEEFQEIQRP-CIPYTPFE---SLAPLNGSIALL-HLDESNQYIEIWVM 287
              LI+ F ++ EEF+ ++ P  +     +    +  L+G + L+ + D+S  Y+++W+M
Sbjct: 231 AFNLIVRFDLALEEFEIVRFPEAVANGNVDIQMDIGVLDGCLCLMCNYDQS--YVDVWMM 288

Query: 288 NEMN----WIQQFAIGPFLGVKS-----PCGFWKN-NAVLMESINGKLLLYDLVVQEM-- 335
            E N    W + F +     VKS     P  + K+   VL+E  N KL+ +DL  ++M  
Sbjct: 289 KEYNVRDSWTKVFTVQKPKSVKSFSYMRPLVYSKDKKKVLLELNNTKLVWFDLESKKMST 348

Query: 336 ---RDLGRFSSGELGAAILIYCYKESLIRLKGEEEDSLSDS 373
              +D     S EL  + L+   K  L  +K  +E    ++
Sbjct: 349 LRIKDCPSSYSAELVVSSLVLGCKGDLNNIKYRKEQQAKEA 389
Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins (By similarity). Regulates negatively both salicylic acid (SA)-dependent and SA-independent defense signaling.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9C9Y4|FB136_ARATH F-box protein At3g08750 OS=Arabidopsis thaliana GN=At3g08750 PE=2 SV=1 Back     alignment and function description
>sp|Q8GXC7|FBK50_ARATH F-box/kelch-repeat protein At3g06240 OS=Arabidopsis thaliana GN=At3g06240 PE=2 SV=1 Back     alignment and function description
>sp|Q3ECE2|FB85_ARATH Putative F-box protein At1g70960 OS=Arabidopsis thaliana GN=At1g70960 PE=4 SV=1 Back     alignment and function description
>sp|Q9LU24|FB145_ARATH Putative F-box protein At3g16210 OS=Arabidopsis thaliana GN=At3g16210 PE=4 SV=1 Back     alignment and function description
>sp|Q9C6J3|FB52_ARATH Putative F-box protein At1g50870 OS=Arabidopsis thaliana GN=At1g50870 PE=4 SV=1 Back     alignment and function description
>sp|Q9LUP1|FBK61_ARATH Putative F-box/kelch-repeat protein At3g17570 OS=Arabidopsis thaliana GN=At3g17570 PE=4 SV=1 Back     alignment and function description
>sp|Q9LVS9|FB340_ARATH Probable F-box protein At5g47300 OS=Arabidopsis thaliana GN=At5g47300 PE=4 SV=1 Back     alignment and function description
>sp|Q9SUY0|FB244_ARATH F-box protein At4g22390 OS=Arabidopsis thaliana GN=At4g22390 PE=2 SV=3 Back     alignment and function description
>sp|Q9T0J4|FB249_ARATH Putative F-box protein At4g38870 OS=Arabidopsis thaliana GN=At4g38870 PE=4 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query384
224119696367 predicted protein [Populus trichocarpa] 0.869 0.910 0.371 4e-52
224133722443 predicted protein [Populus trichocarpa] 0.932 0.808 0.375 5e-45
224117590441 f-box family protein [Populus trichocarp 0.872 0.759 0.357 2e-40
224119700272 predicted protein [Populus trichocarpa] 0.588 0.830 0.386 9e-34
305644341394 S-locus F-box brothers [Malus x domestic 0.794 0.774 0.335 2e-29
305644335393 S-locus F-box brothers-like protein [Mal 0.794 0.776 0.333 3e-29
305644333394 S-locus F-box brothers [Malus x domestic 0.794 0.774 0.332 5e-29
222159930394 F-box SLFB9 protein [Malus x domestica] 0.794 0.774 0.329 6e-29
90103254393 S1-locus F-box [Malus x domestica] 0.794 0.776 0.330 6e-29
148923046392 class S F-box protein [Nicotiana alata] 0.888 0.869 0.313 7e-29
>gi|224119696|ref|XP_002318137.1| predicted protein [Populus trichocarpa] gi|222858810|gb|EEE96357.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  211 bits (538), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 134/361 (37%), Positives = 201/361 (55%), Gaps = 27/361 (7%)

Query: 13  LMPEDVRLEILSRLPVKSLMRLRCVCKSWYALIENPKFISKHLENF--NDENAHLMISYQ 70
           L+PEDV +EILS LPVK+L++ +CVCKSWY +I +  FIS HL N   N ++ HL+  + 
Sbjct: 8   LLPEDVIIEILSLLPVKTLLQFKCVCKSWYGIITSSNFISLHLNNHYNNIKSGHLLAHFV 67

Query: 71  VYDDNGPNSVTSLFKDKTLADLSYENIHRPISRELLGPYDGIFCLC--DGGLITLWNPAT 128
                    +  LF+D++L DLS++ +  PI   L GP +GIF +   D     LWNPAT
Sbjct: 68  C------PQLLELFQDESLTDLSHQGLDPPIRGRLCGPCNGIFYVDSEDSSGSGLWNPAT 121

Query: 129 KECRTLPNYKKNLPALATFLKRNAIFGLCDASGDYKVVFICKLWN-EKIQDAYEHAHVAV 187
           KE + LP   +N  +L  + + +  FG    + DYKVV I + +  E   + +  + V V
Sbjct: 122 KEFKLLPEKIRNKSSLPLYYEDSYGFGFDPVTNDYKVVVIRESYTREYYLEKFPSSLVIV 181

Query: 188 YTSSTDSWR----VSKGNIKWIPYVFESYYNNANLNGVFYWFVSRAGDFHSKLILLFRIS 243
           YT  TDSWR    + +G      Y     Y   N++GV+YW        H  +IL F ++
Sbjct: 182 YTLRTDSWRCWGSLDQG------YTLLGNYCYTNVDGVYYWQAGHG--VHMNVILSFNMA 233

Query: 244 DEEFQEIQRPCIPYTPFES-LAPLNGSIALLHLDESNQYIEIWVMNEMNWIQQFAIGPFL 302
            + FQEIQ P      + + L   + SIA   +    ++++IWV+NE  WI+QF   P L
Sbjct: 234 TDAFQEIQEPDYDKPAYSTRLILYHDSIAFSTVHNVEKFLDIWVLNEGCWIRQFKSRPLL 293

Query: 303 GVKSPCGFWKNNAVLMESINGKLLLYDLVVQEMRDLGRFSSGELGAAILIYCYKESLIRL 362
            +++P   WKN  V+++S N +L+LYD   QE++DL RF    +   IL+  Y+ESL+ +
Sbjct: 294 ELRNPVAHWKNGNVILDSDNDQLMLYDTNKQELKDL-RFKGTGVCYEILV--YRESLVSI 350

Query: 363 K 363
           K
Sbjct: 351 K 351

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224133722|ref|XP_002327664.1| predicted protein [Populus trichocarpa] gi|222836749|gb|EEE75142.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224117590|ref|XP_002331674.1| f-box family protein [Populus trichocarpa] gi|222874093|gb|EEF11224.1| f-box family protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224119700|ref|XP_002318138.1| predicted protein [Populus trichocarpa] gi|222858811|gb|EEE96358.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|305644341|gb|ADM53772.1| S-locus F-box brothers [Malus x domestica] Back     alignment and taxonomy information
>gi|305644335|gb|ADM53769.1| S-locus F-box brothers-like protein [Malus x domestica] Back     alignment and taxonomy information
>gi|305644333|gb|ADM53768.1| S-locus F-box brothers [Malus x domestica] Back     alignment and taxonomy information
>gi|222159930|gb|ACM47303.1| F-box SLFB9 protein [Malus x domestica] Back     alignment and taxonomy information
>gi|90103254|gb|ABD85472.1| S1-locus F-box [Malus x domestica] Back     alignment and taxonomy information
>gi|148923046|gb|ABR18787.1| class S F-box protein [Nicotiana alata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query384
TAIR|locus:2082410427 AT3G06240 "AT3G06240" [Arabido 0.622 0.559 0.267 1.6e-17
TAIR|locus:2013915369 AT1G70960 "AT1G70960" [Arabido 0.682 0.710 0.277 1.5e-15
TAIR|locus:2135615413 CPR1 "AT4G12560" [Arabidopsis 0.729 0.677 0.267 2e-14
TAIR|locus:2090577396 AT3G17540 "AT3G17540" [Arabido 0.664 0.643 0.270 3e-14
TAIR|locus:2127465402 AT4G22390 "AT4G22390" [Arabido 0.692 0.661 0.240 1.2e-13
TAIR|locus:2089473410 AT3G21410 "AT3G21410" [Arabido 0.901 0.843 0.243 1.3e-13
TAIR|locus:2090507388 AT3G17490 "AT3G17490" [Arabido 0.710 0.703 0.268 1.4e-13
TAIR|locus:2171509416 AT5G47300 "AT5G47300" [Arabido 0.716 0.661 0.261 1.8e-13
TAIR|locus:2090482381 AT3G17570 "AT3G17570" [Arabido 0.567 0.572 0.288 2.3e-13
TAIR|locus:2090567388 AT3G17530 "AT3G17530" [Arabido 0.697 0.690 0.280 2.4e-13
TAIR|locus:2082410 AT3G06240 "AT3G06240" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 179 (68.1 bits), Expect = 1.6e-17, Sum P(2) = 1.6e-17
 Identities = 73/273 (26%), Positives = 130/273 (47%)

Query:   104 ELLGPYDGIFCLCDG-GLITLWNPATKECRTLP-NYKKNLPALATFLKRNAI---FGLCD 158
             E++G  +G+ C+  G G + L+NP T + + LP N++   P    + + N     FG   
Sbjct:   164 EIVGSSNGLVCISPGEGAVFLYNPTTGDSKRLPENFR---PKSVEYERDNFQTYGFGFDG 220

Query:   159 ASGDYKVVFICKLWNEKIQDAYEHAHVAVYTSSTDSWRVSKGNIKWIPYVFESYYNNANL 218
              + DYK+V +    +E I DA      +VY+   DSWR    N+ +  +   SY +  + 
Sbjct:   221 LTDDYKLVKLVAT-SEDILDA------SVYSLKADSWR-RICNLNY-EHNDGSYTSGVHF 271

Query:   219 NGVFYWFVSRAGDFHSKLILLFRISDEEFQEIQRP-----CIP-YTPFESLAPLNGSIAL 272
             NG  +W  + +   + ++++ F I  EEF+E+  P     C   ++ F  +  LNG + +
Sbjct:   272 NGAIHWVFTESRH-NQRVVVAFDIQTEEFREMPVPDEAEDCSHRFSNFV-VGSLNGRLCV 329

Query:   273 LHLDESNQYIEIWVMNEM----NWIQQFAIGP-FLGVKSPCGFWKNNAVLMESINGKLLL 327
             ++    + + +IWVM+E     +W  +  I   +  +K  C    +  VL+E ++G L+L
Sbjct:   330 VN-SCYDVHDDIWVMSEYGEAKSW-SRIRINLLYRSMKPLCSTKNDEEVLLE-LDGDLVL 386

Query:   328 YDLVVQEMRDLGRFSSGELGAAILIYCYKESLI 360
             Y+       +LG     +L        Y ESLI
Sbjct:   387 YNFETNASSNLG-ICGVKLSDGFEANTYVESLI 418
GO:0003674 "molecular_function" evidence=ND
GO:0005634 "nucleus" evidence=ISM
GO:0008150 "biological_process" evidence=ND
TAIR|locus:2013915 AT1G70960 "AT1G70960" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2135615 CPR1 "AT4G12560" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2090577 AT3G17540 "AT3G17540" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2127465 AT4G22390 "AT4G22390" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2089473 AT3G21410 "AT3G21410" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2090507 AT3G17490 "AT3G17490" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2171509 AT5G47300 "AT5G47300" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2090482 AT3G17570 "AT3G17570" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2090567 AT3G17530 "AT3G17530" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
eugene3.00120932
hypothetical protein (367 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query384
TIGR01640230 TIGR01640, F_box_assoc_1, F-box protein interactio 2e-22
smart0025641 smart00256, FBOX, A Receptor for Ubiquitination Ta 2e-09
pfam0064648 pfam00646, F-box, F-box domain 2e-09
pfam1293747 pfam12937, F-box-like, F-box-like 1e-07
>gnl|CDD|233502 TIGR01640, F_box_assoc_1, F-box protein interaction domain Back     alignment and domain information 
 Score = 94.0 bits (234), Expect = 2e-22
 Identities = 57/240 (23%), Positives = 91/240 (37%), Gaps = 33/240 (13%)

Query: 106 LGPYDGIFCLCDGGLITLWNPATKECRTLPNYKKNLPALATFLKRNAIFGL----CDASG 161
           + P DG+ C   G  + +WNP+T + R LP      P      K +  + L     +   
Sbjct: 1   VVPCDGLICFSYGKRLVVWNPSTGQSRWLP-----TPKSRRSNKESDTYFLGYDPIE--K 53

Query: 162 DYKVVFICKLWNEKIQDAYEHAHVAVYTSSTDSWRVSKGNIKWIPYVFESYYNNANLNGV 221
            YKV+        + Q  ++     VYT  ++SWR  + +    P           +NGV
Sbjct: 54  QYKVLCFSDRSGNRNQSEHQ-----VYTLGSNSWRTIECSPPHHPL----KSRGVCINGV 104

Query: 222 FYWFVSRAGDFHSKLILLFRISDEEFQE-IQRPCI--PYTPFESLAPLNGSIALLHLDES 278
            Y+            I+ F +S E F+E I  PC       + SL    G +A+L   + 
Sbjct: 105 LYYLAYTLKTNPDYFIVSFDVSSERFKEFIPLPCGNSDSVDYLSLINYKGKLAVLKQKKD 164

Query: 279 NQYIEIWVMN---EMNWIQQFAIGP-----FLGVKSPCGF-WKNNAVLM-ESINGKLLLY 328
               ++WV+N   +  W + F +        +      GF  K   VL  E  N   + Y
Sbjct: 165 TNNFDLWVLNDAGKQEWSKLFTVPIPPLPDLVDDNFLSGFTDKGEIVLCCEDENPFYIFY 224

This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain. Length = 230
>gnl|CDD|197608 smart00256, FBOX, A Receptor for Ubiquitination Targets Back     alignment and domain information
>gnl|CDD|201368 pfam00646, F-box, F-box domain Back     alignment and domain information
>gnl|CDD|221867 pfam12937, F-box-like, F-box-like Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 384
TIGR01640230 F_box_assoc_1 F-box protein interaction domain. Th 100.0
PF07734164 FBA_1: F-box associated; InterPro: IPR006527 This 99.69
PF08268129 FBA_3: F-box associated domain; InterPro: IPR01318 99.59
PLN03215373 ascorbic acid mannose pathway regulator 1; Provisi 99.57
PHA02713557 hypothetical protein; Provisional 99.09
PHA02713557 hypothetical protein; Provisional 99.01
KOG4441571 consensus Proteins containing BTB/POZ and Kelch do 99.0
PF1293747 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 98.97
PLN02153341 epithiospecifier protein 98.91
KOG4441571 consensus Proteins containing BTB/POZ and Kelch do 98.87
PHA03098534 kelch-like protein; Provisional 98.85
PLN02193470 nitrile-specifier protein 98.85
PHA02790480 Kelch-like protein; Provisional 98.84
PF0064648 F-box: F-box domain; InterPro: IPR001810 The F-box 98.84
smart0025641 FBOX A Receptor for Ubiquitination Targets. 98.76
TIGR03548323 mutarot_permut cyclically-permuted mutatrotase fam 98.7
TIGR03547346 muta_rot_YjhT mutatrotase, YjhT family. Members of 98.65
PRK14131376 N-acetylneuraminic acid mutarotase; Provisional 98.52
PHA03098534 kelch-like protein; Provisional 98.49
PHA02790480 Kelch-like protein; Provisional 98.42
PLN02193470 nitrile-specifier protein 98.4
PLN02153341 epithiospecifier protein 98.39
PRK14131376 N-acetylneuraminic acid mutarotase; Provisional 98.14
TIGR03548323 mutarot_permut cyclically-permuted mutatrotase fam 97.94
KOG1230 521 consensus Protein containing repeated kelch motifs 97.91
KOG4693392 consensus Uncharacterized conserved protein, conta 97.85
KOG0281499 consensus Beta-TrCP (transducin repeats containing 97.76
TIGR03547346 muta_rot_YjhT mutatrotase, YjhT family. Members of 97.59
KOG2120419 consensus SCF ubiquitin ligase, Skp2 component [Po 97.41
KOG0379 482 consensus Kelch repeat-containing proteins [Genera 97.0
KOG0379 482 consensus Kelch repeat-containing proteins [Genera 96.78
KOG4693392 consensus Uncharacterized conserved protein, conta 96.42
KOG2997366 consensus F-box protein FBX9 [General function pre 96.06
KOG1230 521 consensus Protein containing repeated kelch motifs 95.97
PF1396450 Kelch_6: Kelch motif 95.73
PF02191250 OLF: Olfactomedin-like domain; InterPro: IPR003112 94.62
COG4257353 Vgb Streptogramin lyase [Defense mechanisms] 94.37
PF0134447 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is 94.25
KOG0310 487 consensus Conserved WD40 repeat-containing protein 93.41
COG4257353 Vgb Streptogramin lyase [Defense mechanisms] 93.37
PF13360238 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 93.17
PF08450246 SGL: SMP-30/Gluconolaconase/LRE-like region; Inter 92.87
PF0764649 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is 92.75
smart00284255 OLF Olfactomedin-like domains. 92.72
COG3055381 Uncharacterized protein conserved in bacteria [Fun 92.64
TIGR01640230 F_box_assoc_1 F-box protein interaction domain. Th 90.03
PF02897414 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal 90.0
PF1396450 Kelch_6: Kelch motif 89.96
KOG0274537 consensus Cdc4 and related F-box and WD-40 protein 89.61
PF07762131 DUF1618: Protein of unknown function (DUF1618); In 89.58
PF07893342 DUF1668: Protein of unknown function (DUF1668); In 89.22
PF13360238 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 88.06
smart0061247 Kelch Kelch domain. 86.72
PF1341849 Kelch_4: Galactose oxidase, central domain; PDB: 2 86.69
KOG4341483 consensus F-box protein containing LRR [General fu 85.81
PRK11138 394 outer membrane biogenesis protein BamB; Provisiona 85.38
PF10282345 Lactonase: Lactonase, 7-bladed beta-propeller; Int 84.74
KOG4152 830 consensus Host cell transcription factor HCFC1 [Ce 83.18
PF1341849 Kelch_4: Galactose oxidase, central domain; PDB: 2 82.72
PLN02772 398 guanylate kinase 82.64
PF1341549 Kelch_3: Galactose oxidase, central domain 80.82
PRK11138394 outer membrane biogenesis protein BamB; Provisiona 80.12
>TIGR01640 F_box_assoc_1 F-box protein interaction domain Back     alignment and domain information 
Probab=100.00  E-value=9.7e-35  Score=256.09  Aligned_cols=216  Identities=23%  Similarity=0.437  Sum_probs=163.3

Q ss_pred             eccccceEEEeeCCeEEEEccCcccccccCCCCCCCCcccccceeeeEEeeeCCCCCEEEEEEEEEecccccccccccEE
Q 038188          106 LGPYDGIFCLCDGGLITLWNPATKECRTLPNYKKNLPALATFLKRNAIFGLCDASGDYKVVFICKLWNEKIQDAYEHAHV  185 (384)
Q Consensus       106 ~~s~~GLl~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~  185 (384)
                      ++|||||||+.....++||||+||+++.||+++....  . .....++||||+.+++||||++.......     ....+
T Consensus         1 ~~sCnGLlc~~~~~~~~V~NP~T~~~~~LP~~~~~~~--~-~~~~~~~~G~d~~~~~YKVv~~~~~~~~~-----~~~~~   72 (230)
T TIGR01640         1 VVPCDGLICFSYGKRLVVWNPSTGQSRWLPTPKSRRS--N-KESDTYFLGYDPIEKQYKVLCFSDRSGNR-----NQSEH   72 (230)
T ss_pred             CcccceEEEEecCCcEEEECCCCCCEEecCCCCCccc--c-cccceEEEeecccCCcEEEEEEEeecCCC-----CCccE
Confidence            4789999999988899999999999999997654211  1 11236899999999999999997642211     25789


Q ss_pred             EEEEcCCCccccccCCccccceeecCCcceEEECceEEEEEeecCCCCccEEEEEEcCCceee-eecCCCCCC--CCcee
Q 038188          186 AVYTSSTDSWRVSKGNIKWIPYVFESYYNNANLNGVFYWFVSRAGDFHSKLILLFRISDEEFQ-EIQRPCIPY--TPFES  262 (384)
Q Consensus       186 ~vyss~t~~W~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~il~fD~~~~~~~-~i~~P~~~~--~~~~~  262 (384)
                      +||++++++||.++..+   +..... ..+|++||++||++..........|++||+++|+|+ .+++|....  .....
T Consensus        73 ~Vys~~~~~Wr~~~~~~---~~~~~~-~~~v~~~G~lyw~~~~~~~~~~~~IvsFDl~~E~f~~~i~~P~~~~~~~~~~~  148 (230)
T TIGR01640        73 QVYTLGSNSWRTIECSP---PHHPLK-SRGVCINGVLYYLAYTLKTNPDYFIVSFDVSSERFKEFIPLPCGNSDSVDYLS  148 (230)
T ss_pred             EEEEeCCCCccccccCC---CCcccc-CCeEEECCEEEEEEEECCCCCcEEEEEEEcccceEeeeeecCccccccccceE
Confidence            99999999999987432   211122 239999999999997532222238999999999999 599997652  23568


Q ss_pred             EEEECCeEEEEEecCCCCeEEEEEEcC---CceeEEEEeCC--CCcc---ccceEEEeCCEEEEEEeC--Ce-EEEEECC
Q 038188          263 LAPLNGSIALLHLDESNQYIEIWVMNE---MNWIQQFAIGP--FLGV---KSPCGFWKNNAVLMESIN--GK-LLLYDLV  331 (384)
Q Consensus       263 l~~~~G~L~l~~~~~~~~~l~iW~l~~---~~W~~~~~i~~--~~~~---~~~~~~~~~~~il~~~~~--~~-l~~yd~~  331 (384)
                      |++++|+|+++........++||+|++   ..|+|+++|+.  ...+   ..|+++.++++|++....  +. +++||++
T Consensus       149 L~~~~G~L~~v~~~~~~~~~~IWvl~d~~~~~W~k~~~i~~~~~~~~~~~~~~~~~~~~g~I~~~~~~~~~~~~~~y~~~  228 (230)
T TIGR01640       149 LINYKGKLAVLKQKKDTNNFDLWVLNDAGKQEWSKLFTVPIPPLPDLVDDNFLSGFTDKGEIVLCCEDENPFYIFYYNVG  228 (230)
T ss_pred             EEEECCEEEEEEecCCCCcEEEEEECCCCCCceeEEEEEcCcchhhhhhheeEeEEeeCCEEEEEeCCCCceEEEEEecc
Confidence            999999999997754335699999997   57999999973  2222   237888888999887664  34 9999998


Q ss_pred             CC
Q 038188          332 VQ  333 (384)
Q Consensus       332 t~  333 (384)
                      ++
T Consensus       229 ~~  230 (230)
T TIGR01640       229 EN  230 (230)
T ss_pred             CC
Confidence            75

This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants Back     alignment and domain information
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants Back     alignment and domain information
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional Back     alignment and domain information
>PHA02713 hypothetical protein; Provisional Back     alignment and domain information
>PHA02713 hypothetical protein; Provisional Back     alignment and domain information
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B Back     alignment and domain information
>PLN02153 epithiospecifier protein Back     alignment and domain information
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>PHA03098 kelch-like protein; Provisional Back     alignment and domain information
>PLN02193 nitrile-specifier protein Back     alignment and domain information
>PHA02790 Kelch-like protein; Provisional Back     alignment and domain information
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ] Back     alignment and domain information
>smart00256 FBOX A Receptor for Ubiquitination Targets Back     alignment and domain information
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein Back     alignment and domain information
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family Back     alignment and domain information
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional Back     alignment and domain information
>PHA03098 kelch-like protein; Provisional Back     alignment and domain information
>PHA02790 Kelch-like protein; Provisional Back     alignment and domain information
>PLN02193 nitrile-specifier protein Back     alignment and domain information
>PLN02153 epithiospecifier protein Back     alignment and domain information
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional Back     alignment and domain information
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein Back     alignment and domain information
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only] Back     alignment and domain information
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only] Back     alignment and domain information
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] Back     alignment and domain information
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family Back     alignment and domain information
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only] Back     alignment and domain information
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only] Back     alignment and domain information
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only] Back     alignment and domain information
>KOG2997 consensus F-box protein FBX9 [General function prediction only] Back     alignment and domain information
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only] Back     alignment and domain information
>PF13964 Kelch_6: Kelch motif Back     alignment and domain information
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium [] Back     alignment and domain information
>COG4257 Vgb Streptogramin lyase [Defense mechanisms] Back     alignment and domain information
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified [] Back     alignment and domain information
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>COG4257 Vgb Streptogramin lyase [Defense mechanisms] Back     alignment and domain information
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A Back     alignment and domain information
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species Back     alignment and domain information
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified [] Back     alignment and domain information
>smart00284 OLF Olfactomedin-like domains Back     alignment and domain information
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>TIGR01640 F_box_assoc_1 F-box protein interaction domain Back     alignment and domain information
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>PF13964 Kelch_6: Kelch motif Back     alignment and domain information
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] Back     alignment and domain information
>PF07762 DUF1618: Protein of unknown function (DUF1618); InterPro: IPR011676 The proteins of this entry are mainly hypothetical proteins expressed by Oryza sativa Back     alignment and domain information
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function Back     alignment and domain information
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A Back     alignment and domain information
>smart00612 Kelch Kelch domain Back     alignment and domain information
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B Back     alignment and domain information
>KOG4341 consensus F-box protein containing LRR [General function prediction only] Back     alignment and domain information
>PRK11138 outer membrane biogenesis protein BamB; Provisional Back     alignment and domain information
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 Back     alignment and domain information
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription] Back     alignment and domain information
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B Back     alignment and domain information
>PLN02772 guanylate kinase Back     alignment and domain information
>PF13415 Kelch_3: Galactose oxidase, central domain Back     alignment and domain information
>PRK11138 outer membrane biogenesis protein BamB; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query384
1fs1_A53 SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L 2e-07
2e31_A297 FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui 6e-07
2ast_B336 S-phase kinase-associated protein 2; SCF-substrate 1e-06
3l2o_B312 F-box only protein 4; small G protein fold, UBL co 6e-06
2ovr_B445 FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 8e-05
3v7d_B464 Cell division control protein 4; WD 40 domain, pho 8e-05
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E Length = 53 Back     alignment and structure
 Score = 46.1 bits (110), Expect = 2e-07
 Identities = 12/35 (34%), Positives = 21/35 (60%)

Query: 14 MPEDVRLEILSRLPVKSLMRLRCVCKSWYALIENP 48
          +P+++ L I S L +  L+++  VCK WY L  + 
Sbjct: 12 LPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDE 46
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A Length = 297 Back     alignment and structure
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336 Back     alignment and structure
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} Length = 312 Back     alignment and structure
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Length = 445 Back     alignment and structure
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Length = 464 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query384
1zgk_A308 Kelch-like ECH-associated protein 1; beta-propelle 99.29
3ii7_A306 Kelch-like protein 7; protein-binding, kelch-repea 99.25
4asc_A315 Kelch repeat and BTB domain-containing protein 5; 99.25
2vpj_A301 Kelch-like protein 12; adaptor protein, WNT signal 99.23
2xn4_A302 Kelch-like protein 2; structural protein, cytoskel 99.2
2woz_A318 Kelch repeat and BTB domain-containing protein 10; 99.19
2vpj_A301 Kelch-like protein 12; adaptor protein, WNT signal 99.16
1fs1_A53 SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L 99.14
1zgk_A308 Kelch-like ECH-associated protein 1; beta-propelle 99.12
2xn4_A302 Kelch-like protein 2; structural protein, cytoskel 99.12
3ii7_A306 Kelch-like protein 7; protein-binding, kelch-repea 99.11
2e31_A297 FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui 99.09
2uvk_A357 YJHT; unknown function, hypothetical protein, sial 99.05
4asc_A315 Kelch repeat and BTB domain-containing protein 5; 99.03
2woz_A318 Kelch repeat and BTB domain-containing protein 10; 98.95
3v7d_B464 Cell division control protein 4; WD 40 domain, pho 98.78
2ovr_B445 FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 98.78
2uvk_A357 YJHT; unknown function, hypothetical protein, sial 98.74
2zwa_A695 Leucine carboxyl methyltransferase 2; HET: SAH CIT 98.74
1p22_A435 F-BOX/WD-repeat protein 1A; ubiquitination, degrad 98.56
3l2o_B312 F-box only protein 4; small G protein fold, UBL co 98.1
1k3i_A 656 Galactose oxidase precursor; blade beta propeller, 98.04
2zwa_A695 Leucine carboxyl methyltransferase 2; HET: SAH CIT 97.91
1k3i_A 656 Galactose oxidase precursor; blade beta propeller, 97.87
2ast_B336 S-phase kinase-associated protein 2; SCF-substrate 97.65
2p1m_B 594 Transport inhibitor response 1 protein; F-BOX, leu 97.12
3ogk_B 592 Coronatine-insensitive protein 1; leucine rich rep 96.52
2z2n_A299 Virginiamycin B lyase; seven-bladed beta-propeller 95.95
4gga_A420 P55CDC, cell division cycle protein 20 homolog; ce 94.83
1q7f_A286 NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL 94.24
3jrp_A379 Fusion protein of protein transport protein SEC13 92.93
3v65_B386 Low-density lipoprotein receptor-related protein; 92.63
3dsm_A328 Uncharacterized protein bacuni_02894; seven_blated 92.01
4aez_A401 CDC20, WD repeat-containing protein SLP1; cell cyc 91.91
1q7f_A286 NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL 91.87
3m0c_C 791 LDL receptor, low-density lipoprotein receptor; pr 91.05
3jro_A 753 Fusion protein of protein transport protein SEC13 90.38
3v65_B386 Low-density lipoprotein receptor-related protein; 89.34
3v64_C349 Agrin; beta propeller, laminin-G, signaling, prote 89.32
1ri6_A343 Putative isomerase YBHE; 7-bladed propeller, enzym 89.22
3q7m_A 376 Lipoprotein YFGL, BAMB; beta-propeller, BAM comple 89.15
3hfq_A 347 Uncharacterized protein LP_2219; Q88V64_lacpl, NES 88.73
1rwi_B270 Serine/threonine-protein kinase PKND; beta propell 88.25
3g4e_A297 Regucalcin; six bladed beta-propeller, gluconolcat 87.51
3mbr_X243 Glutamine cyclotransferase; beta-propeller; 1.44A 87.47
3hfq_A347 Uncharacterized protein LP_2219; Q88V64_lacpl, NES 87.1
3dsm_A 328 Uncharacterized protein bacuni_02894; seven_blated 86.83
3e5z_A296 Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco 86.62
1k8k_C 372 P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- 86.24
3scy_A361 Hypothetical bacterial 6-phosphogluconolactonase; 86.12
3hrp_A 409 Uncharacterized protein; NP_812590.1, structural g 86.03
1n7d_A699 LDL receptor, low-density lipoprotein receptor; fa 85.96
3nol_A262 Glutamine cyclotransferase; beta-propeller, glutam 85.11
3v64_C349 Agrin; beta propeller, laminin-G, signaling, prote 85.09
1ijq_A316 LDL receptor, low-density lipoprotein receptor; be 85.08
1pjx_A314 Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries 84.63
1npe_A267 Nidogen, entactin; glycoprotein, basement membrane 84.26
2qc5_A 300 Streptogramin B lactonase; beta propeller, lyase; 84.17
3p5b_L400 Low density lipoprotein receptor variant; B-propel 83.92
2ojh_A297 Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 83.77
2z2n_A299 Virginiamycin B lyase; seven-bladed beta-propeller 83.25
4e54_B435 DNA damage-binding protein 2; beta barrel, double 83.17
2iwa_A266 Glutamine cyclotransferase; pyroglutamate, acyltra 82.44
3m0c_C 791 LDL receptor, low-density lipoprotein receptor; pr 81.9
2dg1_A 333 DRP35, lactonase; beta propeller, hydrolase; 1.72A 81.8
4e54_B435 DNA damage-binding protein 2; beta barrel, double 81.55
1ijq_A316 LDL receptor, low-density lipoprotein receptor; be 81.45
3nok_A268 Glutaminyl cyclase; beta-propeller, cyclotransfera 81.23
1rwi_B270 Serine/threonine-protein kinase PKND; beta propell 80.43
1npe_A267 Nidogen, entactin; glycoprotein, basement membrane 80.33
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Back     alignment and structure
Probab=99.29  E-value=2.1e-09  Score=97.58  Aligned_cols=198  Identities=12%  Similarity=0.059  Sum_probs=125.8

Q ss_pred             CeEEEEccCcccccccCCCCCCCCcccccceeeeEEeeeCCCCCEEEEEEEEEecccccccccccEEEEEEcCCCccccc
Q 038188          119 GLITLWNPATKECRTLPNYKKNLPALATFLKRNAIFGLCDASGDYKVVFICKLWNEKIQDAYEHAHVAVYTSSTDSWRVS  198 (384)
Q Consensus       119 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vyss~t~~W~~~  198 (384)
                      +.++++||.|++|..+|+++.....     ....  .++    . +++.+......     .....+++|+..+++|+.+
T Consensus        90 ~~~~~~d~~~~~W~~~~~~p~~r~~-----~~~~--~~~----~-~iyv~GG~~~~-----~~~~~~~~yd~~~~~W~~~  152 (308)
T 1zgk_A           90 SALDCYNPMTNQWSPCAPMSVPRNR-----IGVG--VID----G-HIYAVGGSHGC-----IHHNSVERYEPERDEWHLV  152 (308)
T ss_dssp             CCEEEEETTTTEEEECCCCSSCCBT-----CEEE--EET----T-EEEEECCEETT-----EECCCEEEEETTTTEEEEC
T ss_pred             ceEEEECCCCCeEeECCCCCcCccc-----cEEE--EEC----C-EEEEEcCCCCC-----cccccEEEECCCCCeEeEC
Confidence            3689999999999999877653211     1111  111    1 34444322111     1146799999999999998


Q ss_pred             cCCccccceeecCCcceEEECceEEEEEeecCCCCccEEEEEEcCCceeeeec-CCCCCCCCceeEEEECCeEEEEEec-
Q 038188          199 KGNIKWIPYVFESYYNNANLNGVFYWFVSRAGDFHSKLILLFRISDEEFQEIQ-RPCIPYTPFESLAPLNGSIALLHLD-  276 (384)
Q Consensus       199 ~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~il~fD~~~~~~~~i~-~P~~~~~~~~~l~~~~G~L~l~~~~-  276 (384)
                      ..++..     .....++.++|.+|.+...........+..||+.+++|+.++ +|...  .....+..+|+|+++... 
T Consensus       153 ~~~p~~-----r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r--~~~~~~~~~~~iyv~GG~~  225 (308)
T 1zgk_A          153 APMLTR-----RIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIR--SGAGVCVLHNCIYAAGGYD  225 (308)
T ss_dssp             CCCSSC-----CBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCC--BSCEEEEETTEEEEECCBC
T ss_pred             CCCCcc-----ccceEEEEECCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCcc--ccceEEEECCEEEEEeCCC
Confidence            755322     122356778999999987543333678999999999999874 34332  233556779999998532 


Q ss_pred             CCCCeEEEEEEcC--CceeEEEEeCCCCccccceEEEeCCEEEEEEe------CCeEEEEECCCCeEEEEeecc
Q 038188          277 ESNQYIEIWVMNE--MNWIQQFAIGPFLGVKSPCGFWKNNAVLMESI------NGKLLLYDLVVQEMRDLGRFS  342 (384)
Q Consensus       277 ~~~~~l~iW~l~~--~~W~~~~~i~~~~~~~~~~~~~~~~~il~~~~------~~~l~~yd~~t~~~~~v~~~~  342 (384)
                      .....-++|+++-  ..|.++..++ .+...... +.-+++|++..+      ...+..||+++++|+++....
T Consensus       226 ~~~~~~~v~~yd~~~~~W~~~~~~p-~~r~~~~~-~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p  297 (308)
T 1zgk_A          226 GQDQLNSVERYDVETETWTFVAPMK-HRRSALGI-TVHQGRIYVLGGYDGHTFLDSVECYDPDTDTWSEVTRMT  297 (308)
T ss_dssp             SSSBCCCEEEEETTTTEEEECCCCS-SCCBSCEE-EEETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECS
T ss_pred             CCCccceEEEEeCCCCcEEECCCCC-CCccceEE-EEECCEEEEEcCcCCCcccceEEEEcCCCCEEeecCCCC
Confidence            2222345777765  8899865332 22122222 233777776643      346999999999999986543
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Back     alignment and structure
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} Back     alignment and structure
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Back     alignment and structure
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Back     alignment and structure
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Back     alignment and structure
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Back     alignment and structure
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E Back     alignment and structure
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Back     alignment and structure
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Back     alignment and structure
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Back     alignment and structure
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A Back     alignment and structure
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Back     alignment and structure
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} Back     alignment and structure
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Back     alignment and structure
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Back     alignment and structure
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Back     alignment and structure
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Back     alignment and structure
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Back     alignment and structure
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Back     alignment and structure
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} Back     alignment and structure
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A Back     alignment and structure
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Back     alignment and structure
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A Back     alignment and structure
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Back     alignment and structure
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Back     alignment and structure
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Back     alignment and structure
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* Back     alignment and structure
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A Back     alignment and structure
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 Back     alignment and structure
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} Back     alignment and structure
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} Back     alignment and structure
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} Back     alignment and structure
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} Back     alignment and structure
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 Back     alignment and structure
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} Back     alignment and structure
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} Back     alignment and structure
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} Back     alignment and structure
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} Back     alignment and structure
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 Back     alignment and structure
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A Back     alignment and structure
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} Back     alignment and structure
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A Back     alignment and structure
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B Back     alignment and structure
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} Back     alignment and structure
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} Back     alignment and structure
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} Back     alignment and structure
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} Back     alignment and structure
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C Back     alignment and structure
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A Back     alignment and structure
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} Back     alignment and structure
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A Back     alignment and structure
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A Back     alignment and structure
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} Back     alignment and structure
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 Back     alignment and structure
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... Back     alignment and structure
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 Back     alignment and structure
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} Back     alignment and structure
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L Back     alignment and structure
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} Back     alignment and structure
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* Back     alignment and structure
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* Back     alignment and structure
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* Back     alignment and structure
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} Back     alignment and structure
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A Back     alignment and structure
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* Back     alignment and structure
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 Back     alignment and structure
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} Back     alignment and structure
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A Back     alignment and structure
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 384
d1fs1a141 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [ 2e-09
d2ovrb1102 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing 8e-06
d1p22a1118 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (b 2e-05
d1nexb1100 a.158.1.1 (B:270-369) Cdc4 F-box and linker domain 6e-05
>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 41 Back     information, alignment and structure

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.4 bits (121), Expect = 2e-09
 Identities = 12/37 (32%), Positives = 21/37 (56%)

Query: 14 MPEDVRLEILSRLPVKSLMRLRCVCKSWYALIENPKF 50
          +P+++ L I S L +  L+++  VCK WY L  +   
Sbjct: 4  LPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESL 40
>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 102 Back     information, alignment and structure
>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 118 Back     information, alignment and structure
>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 100 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query384
d1fs1a141 Skp2 {Human (Homo sapiens) [TaxId: 9606]} 99.31
d2ovrb1102 F-box/WD repeat-containing protein 7, FBXW7 {Human 98.66
d1zgka1288 Kelch-like ECH-associated protein 1, KEAP1 {Human 98.64
d1zgka1288 Kelch-like ECH-associated protein 1, KEAP1 {Human 98.63
d1nexb1100 Cdc4 F-box and linker domains {Baker's yeast (Sacc 98.53
d1p22a1118 F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom 98.34
d1k3ia3 387 Galactose oxidase, central domain {Fungi (Fusarium 97.82
d1k3ia3387 Galactose oxidase, central domain {Fungi (Fusarium 97.61
d2ghsa1295 Regucalcin {Agrobacterium tumefaciens [TaxId: 358] 92.41
d1q7fa_279 Brain tumor cg10719-pa {Fruit fly (Drosophila mela 90.74
d2dg1a1319 Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 89.94
d1kv9a2 560 Quinoprotein alcohol dehydrogenase, N-terminal dom 84.47
d2dg1a1 319 Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 83.81
d1k8kc_ 371 Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur 83.49
d1k8kc_ 371 Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur 81.13
>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=6.7e-13  Score=79.79  Aligned_cols=40  Identities=30%  Similarity=0.618  Sum_probs=37.5

Q ss_pred             cCCCCHHHHHHHHccCChhhhhhhhcccHhhHhhcCChHh
Q 038188           11 SMLMPEDVRLEILSRLPVKSLMRLRCVCKSWYALIENPKF   50 (384)
Q Consensus        11 ~~~LP~dll~eIl~rLp~~~l~r~r~VcK~W~~li~~p~F   50 (384)
                      +..||+|++.+||++||++++.|+++|||+|+.+++++.+
T Consensus         1 f~~LP~eil~~If~~L~~~dl~~~~~Vcr~w~~l~~~~~l   40 (41)
T d1fs1a1           1 WDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESL   40 (41)
T ss_dssp             CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCGGG
T ss_pred             CCcCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCccc
Confidence            4689999999999999999999999999999999998864
>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Back     information, alignment and structure
>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Back     information, alignment and structure
>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} Back     information, alignment and structure
>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} Back     information, alignment and structure
>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure