Citrus Sinensis ID: 038194

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------35
Protein Sequence
MDDSSPHPIQENATVTTTNNTKSTDSSTITTSDNTCNNSSNNNNNNNNNKKCKGKGGPDNSKFRYRGVRQRSWGKWVAEIREPRKRTRKWLGTFATAEDAARAYDRAAIILYGSRAQLNLQPSTSSSSSHSSNSTRGGGGGGSSSSNSSQQTLRPLLPRPTGFGFTFSASSANPAAGAGLSSSSGLVPYGVYPNIMSVSSALLCPNIVQVQNQRDMMMQQQCEIQNYHHHHLQIQQVPDGLNSVSCINDTLAAATSTSSHGNPNHQQQYEQNCLYHDINPIVGTIGSTLSLSTQVAHAPPAEAAAAPDPNMSVGPGSPSIWPLTNEEDYPPTCLWDYTDPFLFDPFFST
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccccEEEEEEcccccccEEEcccccHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccHHHcccccccHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEcccccEEEEEEccccccEEEEcccccHHHHHHHHHHHHHHHHcccEEEcccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccEcEcccccccccccccccccccccccccccEHHHHHHHccccccccEcccccccccccEccccccccEEEcccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
mddssphpiqenatvtttnntkstdsstittsdntcnnssnnnnnnnnnkkckgkggpdnskfryrgvrqrswGKWVAEIREPRKRTRKWLGTFATAEDAARAYDRAAIILYGSraqlnlqpstssssshssnstrggggggssssnssqqtlrpllprptgfgftfsassanpaagaglssssglvpygvypniMSVSsallcpnivQVQNQRDMMMQQQCEIQNyhhhhlqiqqvpdglnsvSCINDTLAaatstsshgnpnhqqqyeqnclyhdinpivgtigstlslstqvahappaeaaaapdpnmsvgpgspsiwpltneedypptclwdytdpflfdpffst
Flexible Loop (DISEMBL)
mddssphpiqenatvtttnntkstdsstittsdntcnnssnnnnnnnnnkkckgkggpdnskfryrgvrqrswgkwvaeireprkrtrkwlgtfataedaaRAYDRAAIILYGSRAQLNLQpstssssshssnSTRGGGGGGSSSSNSSQQTLRPLLPRPTGFGFTFSASSANPAAGAGLSSSSGLVPYGVYPNIMSVSSALLCPNIVQVQNQRDMMMQQQCEIQNYHHHHLQIQQVPDGLNSVSCINDTLAAATSTSSHGNPNHQQQYEQNCLYHDINPIVGTIGSTLSLSTQVAHAPPAEAAAAPDPNMSVGPGSPSIWPLTNEEDYPPTCLWDYTDPFLFDPFFST
Low Complexity Region (SEG)
MDDSSPHPIQEnatvtttnntkstdsstittsdntcnnssnnnnnnnnnKKCKGKGGPDNSKFRYRGVRQRSWGKWVAEIREPRKRTRKWLGTFataedaaraydraaIILYGSRAQLNLQPstssssshssnstrggggggssssnssQQTLRPLLPRPTGFGFTFsassanpaagaglssssgLVPYGVYPNIMSVSSALLCPNIVQVQNQRDMMMQQQCEIQNYHHHHLQIQQVPDGLNSVSCINDTLAAATSTSSHGNPNHQQQYEQNCLYHDINPIVGTIGSTLSLSTQVahappaeaaaapdpNMSVGPGSPSIWPLTNEEDYPPTCLWDYTDPFLFDPFFST
Disordered region (IsUnstruct)
***************************************************************RYRGVRQRSWGKWVAEIREPRKRTRKWLGTFATAEDAARAYDRAAIILYGSR*********************************************************************GLVPYGVYPNIMSVSSALLCPNIVQVQ**********************************************************EQNCLYHDINPIVGTIGSTLSL****************************IWPLTNEEDYPPTCLWDYTDPFLFDPFF**
Disordered Region (DISOPRED)
******************************************************************GVRQRSWGKWVAEIREPRKRTRKWLGTFATAEDAARAYDRAAIILYGSRAQLNLQ**************************************************************************************************************************************************QYE*NCLYHD********************AP*AEA**AP************IWPLTNEEDYPPTCLWDYTDPFLFDPFFS*
Disordered Region (DISEMBL)
*********QENATVT****************DNTCNNSSNNNNNNNNNKKCKGKGGPDNSKFRYRGVRQRSWGKWVAEIREPRKRTRKWLGTFATAEDAARAYDRAAIILYGSRAQLN*********************************LRPLLPRPTGFGFTFSASSAN********SSSGLVPYGVYPNIMSVSSALLCPNIVQVQNQRDMMMQQQCEIQNYHHHHLQIQQVPDGLNSVSCINDTLAA*************QQYEQNCLYHDINPIVGTIGSTLSLSTQVAHAPPAEAAAAPDPNMSVGPGSPSIWPLTNEEDYPPTCLWDYTDPFLFDPFFST
Disordered Region (DISPRO)
************************************************************SKFRYRGVRQRSWGKWVAEIREPRKRTRKWLGTFATAEDAARAYDRAAIILYGSRAQLNLQPS****************************************************************PYGVY**IMSVSSALLCPNIVQVQNQRDMMMQQQCEIQNYHHHHLQIQQVPDGLNSVSCINDTLAAATSTSSHGNPNHQQQYEQNCLYHDINPIVGTIGSTLSLSTQVAHAPPAEAAAAPDPNMSVGPGSPSIWPLTNEEDYPPTCLWDYTDPFLFDPFFST
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDDSSPHPIQENATVTTTNNTKSTDSSTITTSDNTCNNSSNNNNNNNNNKKCKGKGGPDNSKFRYRGVRQRSWGKWVAEIREPRKRTRKWLGTFATAEDAARAYDRAAIILYGSRAQLNLQPSTSSSSSHSSNSTRGGGGGGSSSSNSSQQTLRPLLPRPTGFGFTFSASSANPAAGAGLSSSSGLVPYGVYPNIMSVSSALLCPNIVQVQNQRDMMMQQQCEIQNYHHHHLQIQQVPDGLNSVSCINDTLAAATSTSSHGNPNHQQQYEQNCLYHDINPIVGTIGSTLSLSTQVAHAPPAEAAAAPDPNMSVGPGSPSIWPLTNEEDYPPTCLWDYTDPFLFDPFFST
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	349	2.2.26 [Sep-21-2011]
A0MES8	328	Ethylene-responsive trans	yes	no	0.776	0.826	0.452	1e-42
C7J2Z1	269	Ethylene-responsive trans	yes	no	0.209	0.271	0.835	3e-24
Q9SVX5	277	Dehydration-responsive el	no	no	0.243	0.306	0.623	1e-23
Q10R18	318	Dehydration-responsive el	yes	no	0.194	0.213	0.735	3e-22
P61827	307	Dehydration-responsive el	no	no	0.335	0.381	0.478	8e-22
Q8LFR2	341	Dehydration-responsive el	no	no	0.323	0.331	0.5	4e-21
Q84ZA1	230	Dehydration-responsive el	no	no	0.191	0.291	0.701	6e-21
Q9LQZ2	206	Dehydration-responsive el	no	no	0.220	0.373	0.628	2e-20
O82133	330	Dehydration-responsive el	no	no	0.226	0.239	0.594	2e-19
A2WL19	274	Dehydration-responsive el	N/A	no	0.266	0.339	0.521	2e-19

>sp|A0MES8|ABI4_ARATH Ethylene-responsive transcription factor ABI4 OS=Arabidopsis thaliana GN=ABI4 PE=1 SV=2

 Score =  173 bits (439), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 139/307 (45%), Positives = 172/307 (56%), Gaps = 36/307 (11%)

Query: 50  KKCKGKGGPDNSKFRYRGVRQRSWGKWVAEIREPRKRTRKWLGTFATAEDAARAYDRAAI 109
           +K KGKGGPDNSKFRYRGVRQRSWGKWVAEIREPRKRTRKWLGTFATAEDAARAYDRAA+
Sbjct: 40  RKRKGKGGPDNSKFRYRGVRQRSWGKWVAEIREPRKRTRKWLGTFATAEDAARAYDRAAV 99

Query: 110 ILYGSRAQLNLQPSTSSSSSHSSNSTRGGGGGGSSSSNSSQQTLRPLLPRPTGFGFTFSA 169
            LYGSRAQLNL PS+ SS S SS+S         S+S+SS QTLRPLLPRP         
Sbjct: 100 YLYGSRAQLNLTPSSPSSVSSSSSSVS--AASSPSTSSSSTQTLRPLLPRP--------- 148

Query: 170 SSANPAAGAGLSSSSGLVPYGVYPN---IMSVSSALLCPNIVQVQNQRDMMMQQQCEIQN 226
                 A A +   +   PYG+  N    ++  +++LCP+      Q+    Q       
Sbjct: 149 ------AAATVGGGANFGPYGIPFNNNIFLNGGTSMLCPSYGFFPQQQQQQNQMVQM-GQ 201

Query: 227 YHHHHLQIQQVPDGLNSVSCINDTLAAATSTSS--HGNPNHQQQYEQNC----LYHDINP 280
           + H   Q        N +S I  T    T+++S  H     Q+Q    C       D+N 
Sbjct: 202 FQHQQYQNLHSNTNNNKISDIELTDVPVTNSTSFHHEVALGQEQGGSGCNNNSSMEDLNS 261

Query: 281 IVGTIGSTLSLSTQVAHAPPA---EAAAAPDPNMSVGPGSPSIWPLTNEEDYPPT--CLW 335
           + G++GS+LS    + H PP      +   DP   VG GS +IWP   EE+Y      +W
Sbjct: 262 LAGSVGSSLS----ITHPPPLVDPVCSMGLDPGYMVGDGSSTIWPFGGEEEYSHNWGSIW 317

Query: 336 DYTDPFL 342
           D+ DP L
Sbjct: 318 DFIDPIL 324

Transcription regulator that probably binds to the GCC-box pathogenesis-related promoter element. Binds also to the S-box (5'-CACTTCCA-3') photosynthesis-associated nuclear genes-related (PhANGs-related) promoter element, and thus acts as a transcription inhibitor. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. May have a function in the deetiolation process. Confers sensitivity to abscisic acid (ABA), and regulates the ABA signaling pathway during seed germination, upon nitrate-mediated lateral root inhibition, in hexokinase-dependent sugar responses (including feed-back regulation of photosynthesis and mobilization of storage lipid during germination), and in response to osmotic stress mediated by NaCl, KCl or mannitol. Plays a role in sucrose sensing or signaling, especially at low fluence far red light. Also involved in plant response to glucose treatment, especially at low concentration and in young seedlings. Required for the trehalose-mediated root inhibition and starch accumulation in cotyledons, probably by inhibiting starch breakdown. However, seems to not be involved in sugar-mediated senescence. Required for the ABA-dependent beta-amino-butyric acid (BABA) signaling pathway. BABA primes ABA synthesis and promotes resistance to drought and salt, and leads to a prime callose accumulation that confers resistance against necrotrophic pathogens such as A.brassicicola and P.cucumerina. Seems to be involved in resistance to S.sclerotiorum probably by regulating the ABA-mediated stomatal closure apparently by antagonistic interaction with oxalate. Negative regulator of low water potential-induced Pro accumulation whose effect is decreased by high levels of sugar.
Arabidopsis thaliana (taxid: 3702)

>sp|C7J2Z1|ABI4_ORYSJ Ethylene-responsive transcription factor ABI4 OS=Oryza sativa subsp. japonica GN=ABI4 PE=3 SV=1

 Score =  112 bits (281), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 61/73 (83%), Positives = 65/73 (89%)

Query: 47  NNNKKCKGKGGPDNSKFRYRGVRQRSWGKWVAEIREPRKRTRKWLGTFATAEDAARAYDR 106
              KK  GKGGP+N KFRYRGVRQRSWGKWVAEIREPRKR+RKWLGTFATAEDAARAYDR
Sbjct: 32  RTKKKAAGKGGPENGKFRYRGVRQRSWGKWVAEIREPRKRSRKWLGTFATAEDAARAYDR 91

Query: 107 AAIILYGSRAQLN 119
           AA++LYG RA LN
Sbjct: 92  AALLLYGPRAHLN 104

Probable transcription regulator that binds to cis-responsive elements of genes involved in stress response.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9SVX5|DRE2F_ARATH Dehydration-responsive element-binding protein 2F OS=Arabidopsis thaliana GN=DREB2F PE=2 SV=1

 Score =  111 bits (277), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 53/85 (62%), Positives = 63/85 (74%)

Query: 52  CKGKGGPDNSKFRYRGVRQRSWGKWVAEIREPRKRTRKWLGTFATAEDAARAYDRAAIIL 111
            +GKGGP N+  +YRGVRQR+WGKWVAEIREP+KR R WLG+FATAE+AA AYD AA+ L
Sbjct: 15  ARGKGGPQNALCQYRGVRQRTWGKWVAEIREPKKRARLWLGSFATAEEAAMAYDEAALKL 74

Query: 112 YGSRAQLNLQPSTSSSSSHSSNSTR 136
           YG  A LNL     ++    SNS R
Sbjct: 75  YGHDAYLNLPHLQRNTRPSLSNSQR 99

Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity-inducible transcription.

Arabidopsis thaliana (taxid: 3702)

>sp|Q10R18|DRE2E_ORYSJ Dehydration-responsive element-binding protein 2E OS=Oryza sativa subsp. japonica GN=DREB2E PE=2 SV=1

 Score =  106 bits (264), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 50/68 (73%), Positives = 55/68 (80%)

Query: 53  KGKGGPDNSKFRYRGVRQRSWGKWVAEIREPRKRTRKWLGTFATAEDAARAYDRAAIILY 112
           +GKGGP N+   YRGVRQR+WGKWVAEIREP KRTR WLG+FATAE+AA AYD AA  LY
Sbjct: 16  RGKGGPQNAACEYRGVRQRTWGKWVAEIREPNKRTRLWLGSFATAEEAALAYDEAARRLY 75

Query: 113 GSRAQLNL 120
           G  A LNL
Sbjct: 76  GPDAFLNL 83

Probable transcriptional activator that binds to the DNA sequence 5'-[AG]CCGAC-3' of the cis-acting dehydration-responsive element (DRE).

Oryza sativa subsp. japonica (taxid: 39947)

>sp|P61827|DRE2G_ARATH Dehydration-responsive element-binding protein 2G OS=Arabidopsis thaliana GN=DREB2G PE=2 SV=1

 Score =  104 bits (260), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 57/119 (47%), Positives = 71/119 (59%), Gaps = 2/119 (1%)

Query: 40  SNNNNNNNNNKKC-KGKGGPDNSKFRYRGVRQRSWGKWVAEIREPRKRTRKWLGTFATAE 98
           +   N   + K C KGKGGP+N+   +RGVRQR+WGKWVAEIREP + TR WLGTF T+ 
Sbjct: 8   AKKRNMGRSRKGCMKGKGGPENATCTFRGVRQRTWGKWVAEIREPNRGTRLWLGTFNTSV 67

Query: 99  DAARAYDRAAIILYGSRAQLNL-QPSTSSSSSHSSNSTRGGGGGGSSSSNSSQQTLRPL 156
           +AA AYD AA  LYG  A+LNL  P        + N +  G G GS + N     +  L
Sbjct: 68  EAAMAYDEAAKKLYGHEAKLNLVHPQQQQQVVVNRNLSFSGHGSGSWAYNKKLDMVHGL 126

Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LFR2|DRE2C_ARATH Dehydration-responsive element-binding protein 2C OS=Arabidopsis thaliana GN=DREB2C PE=2 SV=2

 Score =  102 bits (254), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 58/116 (50%), Positives = 74/116 (63%), Gaps = 3/116 (2%)

Query: 50  KKC-KGKGGPDNSKFRYRGVRQRSWGKWVAEIREPRKRTRKWLGTFATAEDAARAYDRAA 108
           K C KGKGGP+N    YRGVRQR WGKWVAEIREP    R WLGTF+++ +AA AYD AA
Sbjct: 56  KGCMKGKGGPENGICDYRGVRQRRWGKWVAEIREPDGGARLWLGTFSSSYEAALAYDEAA 115

Query: 109 IILYGSRAQLNLQPSTSSSSSHSSNSTRGGGGGGSSSSNSSQQTLRPLLPRPTGFG 164
             +YG  A+LNL   T+ SSS ++ +T    G  ++ S+ S+   R      +GFG
Sbjct: 116 KAIYGQSARLNLPEITNRSSSTAATATV--SGSVTAFSDESEVCAREDTNASSGFG 169

Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and abscisic acid-inducible transcription.

Arabidopsis thaliana (taxid: 3702)

>sp|Q84ZA1|DRE2C_ORYSJ Dehydration-responsive element-binding protein 2C OS=Oryza sativa subsp. japonica GN=DREB2C PE=2 SV=1

 Score =  102 bits (253), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 47/67 (70%), Positives = 53/67 (79%)

Query: 53  KGKGGPDNSKFRYRGVRQRSWGKWVAEIREPRKRTRKWLGTFATAEDAARAYDRAAIILY 112
           KGKGGP+N +  +RGVRQR+WGKWVAEIREP +  R WLGTF TA DAARAYD AA  LY
Sbjct: 43  KGKGGPENQRCPFRGVRQRTWGKWVAEIREPNRGARLWLGTFNTALDAARAYDSAARALY 102

Query: 113 GSRAQLN 119
           G  A+LN
Sbjct: 103 GDCARLN 109

Probable transcriptional activator that binds to the DNA sequence 5'-[AG]CCGAC-3' of the cis-acting dehydration-responsive element (DRE).

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9LQZ2|DRE2D_ARATH Dehydration-responsive element-binding protein 2D OS=Arabidopsis thaliana GN=DREB2D PE=2 SV=1

 Score = 99.8 bits (247), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 49/78 (62%), Positives = 56/78 (71%), Gaps = 1/78 (1%)

Query: 50  KKC-KGKGGPDNSKFRYRGVRQRSWGKWVAEIREPRKRTRKWLGTFATAEDAARAYDRAA 108
           K C +GKGGPDN+   Y+GVRQR+WGKWVAEIREP +  R WLGTF T+ +AA AYD AA
Sbjct: 26  KGCMRGKGGPDNASCTYKGVRQRTWGKWVAEIREPNRGARLWLGTFDTSREAALAYDSAA 85

Query: 109 IILYGSRAQLNLQPSTSS 126
             LYG  A LNL  S  S
Sbjct: 86  RKLYGPEAHLNLPESLRS 103

Putative transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity-inducible transcription.

Arabidopsis thaliana (taxid: 3702)

>sp|O82133|DRE2B_ARATH Dehydration-responsive element-binding protein 2B OS=Arabidopsis thaliana GN=DREB2B PE=2 SV=1

 Score = 97.1 bits (240), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 47/79 (59%), Positives = 55/79 (69%)

Query: 58  PDNSKFRYRGVRQRSWGKWVAEIREPRKRTRKWLGTFATAEDAARAYDRAAIILYGSRAQ 117
           PDNS   +RGVRQR WGKWVAEIREP+  TR WLGTF TAE AA AYD AA  +YGS A+
Sbjct: 71  PDNSHCSFRGVRQRIWGKWVAEIREPKIGTRLWLGTFPTAEKAASAYDEAATAMYGSLAR 130

Query: 118 LNLQPSTSSSSSHSSNSTR 136
           LN   S  S  + +S+ + 
Sbjct: 131 LNFPQSVGSEFTSTSSQSE 149

Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription.

Arabidopsis thaliana (taxid: 3702)

>sp|A2WL19|DRE2A_ORYSI Dehydration-responsive element-binding protein 2A OS=Oryza sativa subsp. indica GN=DREB2A PE=3 SV=2

 Score = 96.7 bits (239), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 49/94 (52%), Positives = 63/94 (67%), Gaps = 1/94 (1%)

Query: 37  NNSSNNNNNNNNNKKC-KGKGGPDNSKFRYRGVRQRSWGKWVAEIREPRKRTRKWLGTFA 95
            NSS       + K C  GKGGP+NS   YRGVRQR+WGKWVAEIREP +  R WLG+F 
Sbjct: 47  ENSSRKAPAKGSKKGCMAGKGGPENSNCAYRGVRQRTWGKWVAEIREPNRGRRLWLGSFP 106

Query: 96  TAEDAARAYDRAAIILYGSRAQLNLQPSTSSSSS 129
           TA +AA AYD AA  +YG  A++N   +++ ++S
Sbjct: 107 TALEAAHAYDEAARAMYGPTARVNFADNSTDANS 140

Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription.

Oryza sativa subsp. indica (taxid: 39946)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	349
224109294	412	AP2/ERF domain-containing transcription	0.776	0.657	0.524	2e-52
134038582	334	abscisic acid insensitive 4-1 [Populus t	0.776	0.811	0.524	2e-52
224101169	326	AP2/ERF domain-containing transcription	0.750	0.803	0.524	1e-49
147856476	290	hypothetical protein VITISV_026906 [Viti	0.621	0.748	0.542	8e-47
357492755	333	Ethylene-responsive transcription factor	0.756	0.792	0.476	5e-46
255574822	366	hypothetical protein RCOM_0839150 [Ricin	0.467	0.445	0.660	5e-43
297736582	659	unnamed protein product [Vitis vinifera]	0.424	0.224	0.662	7e-43
48479372	327	putative AP2/EREBP transcription factor	0.773	0.825	0.456	6e-41
116831149	329	unknown [Arabidopsis thaliana]	0.776	0.823	0.452	8e-41
15225661	328	ethylene-responsive transcription factor	0.776	0.826	0.452	8e-41

>gi|224109294|ref|XP_002315150.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa] gi|222864190|gb|EEF01321.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa]

 Score =  213 bits (541), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 159/303 (52%), Positives = 198/303 (65%), Gaps = 32/303 (10%)

Query: 50  KKCKGKGGPDNSKFRYRGVRQRSWGKWVAEIREPRKRTRKWLGTFATAEDAARAYDRAAI 109
           +KCKGKGGPDN KFRYRGVRQRSWGKWVAEIREPRKRTRKWLGTFATAEDAARAYDRAA 
Sbjct: 133 RKCKGKGGPDNGKFRYRGVRQRSWGKWVAEIREPRKRTRKWLGTFATAEDAARAYDRAAF 192

Query: 110 ILYGSRAQLNLQPSTSSSSSHSSNSTRGGGGGGSSSSNSSQQTLRPLLPRP--TGFGFTF 167
           ILYGSRA LNLQPS SSSS+ S +++        +S++SS QTLRPLLPRP   G GF F
Sbjct: 193 ILYGSRAHLNLQPSGSSSSAQSGSTS-------RNSTSSSSQTLRPLLPRPPGFGCGFGF 245

Query: 168 SASSANPAAGAGL-SSSSGLVPYGV--YPNIMSVSSALLCPNIVQVQNQRDMMMQQQCEI 224
           + S +NP A   + ++SSG  PYGV  Y N + V SAL C +  ++  Q      QQ  +
Sbjct: 246 TFSLSNPMASPSVTAASSGFTPYGVNCYSNNV-VGSALQCSSTNEMPGQN----HQQVML 300

Query: 225 QNYHHHHLQIQQVPDGLNSVSCINDTLAAATSTSSHGNPNHQQQYEQNCLYHDINPIVGT 284
           Q Y   H      P+ +     ++ ++  +T+TS     NH  +  Q+  Y D+N + G+
Sbjct: 301 QGYLIQHGANTTNPNNI----FVSSSVDPSTTTSYQ---NHCHRLPQHHAYDDVNALGGS 353

Query: 285 IGSTLSLSTQVAHAPPAEAAAA---PDPNMSVGPGSPSIWPLTNEEDYPPTCLWDYTDPF 341
           +GS+ SLS   ++ PP  A A     DP M +GPGSPS W   N+E+YPP  +WD  DPF
Sbjct: 354 VGSSFSLSG--SNTPPVVAPAGHLLQDPVMHIGPGSPSAW---NDEEYPPPSIWDDEDPF 408

Query: 342 LFD 344
           LFD
Sbjct: 409 LFD 411

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|134038582|gb|ABO48359.1| abscisic acid insensitive 4-1 [Populus trichocarpa]

 Score =  212 bits (540), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 159/303 (52%), Positives = 198/303 (65%), Gaps = 32/303 (10%)

Query: 50  KKCKGKGGPDNSKFRYRGVRQRSWGKWVAEIREPRKRTRKWLGTFATAEDAARAYDRAAI 109
           +KCKGKGGPDN KFRYRGVRQRSWGKWVAEIREPRKRTRKWLGTFATAEDAARAYDRAA 
Sbjct: 55  RKCKGKGGPDNGKFRYRGVRQRSWGKWVAEIREPRKRTRKWLGTFATAEDAARAYDRAAF 114

Query: 110 ILYGSRAQLNLQPSTSSSSSHSSNSTRGGGGGGSSSSNSSQQTLRPLLPRP--TGFGFTF 167
           ILYGSRA LNLQPS SSSS+ S +++        +S++SS QTLRPLLPRP   G GF F
Sbjct: 115 ILYGSRAHLNLQPSGSSSSAQSGSTS-------RNSTSSSSQTLRPLLPRPPGFGCGFGF 167

Query: 168 SASSANPAAGAGL-SSSSGLVPYGV--YPNIMSVSSALLCPNIVQVQNQRDMMMQQQCEI 224
           + S +NP A   + ++SSG  PYGV  Y N + V SAL C +  ++  Q      QQ  +
Sbjct: 168 TFSLSNPMASPSVTAASSGFTPYGVNCYSNNV-VGSALQCSSTNEMPGQN----HQQVML 222

Query: 225 QNYHHHHLQIQQVPDGLNSVSCINDTLAAATSTSSHGNPNHQQQYEQNCLYHDINPIVGT 284
           Q Y   H      P+ +     ++ ++  +T+TS     NH  +  Q+  Y D+N + G+
Sbjct: 223 QGYLIQHGANTTNPNNI----FVSSSVDPSTTTSYQ---NHCHRLPQHHAYDDVNALGGS 275

Query: 285 IGSTLSLSTQVAHAPPAEAAAA---PDPNMSVGPGSPSIWPLTNEEDYPPTCLWDYTDPF 341
           +GS+ SLS   ++ PP  A A     DP M +GPGSPS W   N+E+YPP  +WD  DPF
Sbjct: 276 VGSSFSLSG--SNTPPVVAPAGHLLQDPVMHIGPGSPSAW---NDEEYPPPSIWDDEDPF 330

Query: 342 LFD 344
           LFD
Sbjct: 331 LFD 333

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224101169|ref|XP_002312168.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa] gi|134038584|gb|ABO48360.1| abscisic acid insensitive 4-2 [Populus trichocarpa] gi|222851988|gb|EEE89535.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa]

 Score =  203 bits (516), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 160/305 (52%), Positives = 196/305 (64%), Gaps = 43/305 (14%)

Query: 50  KKCKGKGGPDNSKFRYRGVRQRSWGKWVAEIREPRKRTRKWLGTFATAEDAARAYDRAAI 109
           +KCKGKGGPDN KFRYRGVRQRSWGKWVAEIREPRKRTRKWLGTFATAEDAARAYDRAAI
Sbjct: 54  RKCKGKGGPDNGKFRYRGVRQRSWGKWVAEIREPRKRTRKWLGTFATAEDAARAYDRAAI 113

Query: 110 ILYGSRAQLNLQPSTSSSSSHSSNSTRGGGGGGSSSSNSSQQTLRPLLPRPTGFGFTFSA 169
           ILYGSRAQLNLQPS SSSS+ S  ++        +S++SS QTLRPLLPRP GF FTFS 
Sbjct: 114 ILYGSRAQLNLQPSGSSSSAQSGPTS-------LNSASSSSQTLRPLLPRPPGFVFTFSL 166

Query: 170 --SSANPAAGAGLSSSSGLVPYGV-YPNIMSVSSALLCPNIVQVQNQRDMMMQ--QQCEI 224
             S A+P+  A   +SSG  P GV Y +     SAL C       +  DM++Q  QQ  +
Sbjct: 167 TNSMASPSVTA---ASSGFTPPGVNYHSNNVAGSALPC------LSNNDMLIQNHQQVML 217

Query: 225 QNYHHHHLQIQQVPDGLNSVSCINDTLAAATSTSSHGNPNHQQQYEQNCL--YH---DIN 279
           Q Y      + Q     ++ + I D+ + ATST+          Y  +CL  +H   D++
Sbjct: 218 QRY------LNQYGANTSNPNNIFDSSSVATSTTP--------SYHSHCLPQHHACDDVS 263

Query: 280 PIVGTIGSTLSLSTQVAHAPPAEAAAAPDPNMSVGPGSPSIWPLTNEEDYPPTCLWDYTD 339
            +VG++GS+ SLS +      A      DP M VG GSPS+W   N+++YPP  +WD  D
Sbjct: 264 SLVGSVGSSFSLSGRNTQPIVAPVGHLQDPAMHVGAGSPSVW---NDDEYPPPTIWDDED 320

Query: 340 PFLFD 344
           PFLFD
Sbjct: 321 PFLFD 325

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147856476|emb|CAN82498.1| hypothetical protein VITISV_026906 [Vitis vinifera]

 Score =  194 bits (492), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 140/258 (54%), Positives = 166/258 (64%), Gaps = 41/258 (15%)

Query: 42  NNNNNNNNKKCKGKGGPDNSKFRYRGVRQRSWGKWVAEIREPRKRTRKWLGTFATAEDAA 101
           +N +N N++KCKGKGGPDNSKF+YRGVRQRSWGKWVAEIREPRKRTRKWLGTFATAEDAA
Sbjct: 39  DNGSNGNSRKCKGKGGPDNSKFKYRGVRQRSWGKWVAEIREPRKRTRKWLGTFATAEDAA 98

Query: 102 RAYDRAAIILYGSRAQLNLQPSTSSSSSHSSNSTRGGGGGGSSSSNSSQQTLRPLLPRPT 161
           RAYDRAAIILYGSRAQLNLQPS SS+SS S  S+    G          QTLRPLLPRP+
Sbjct: 99  RAYDRAAIILYGSRAQLNLQPSVSSASSSSRGSSSSSSG---------TQTLRPLLPRPS 149

Query: 162 GFGFTFSASSANPAAGAGLSSSSGLVPYGVYPNIMSVSSALLCPNIVQVQNQRDMMMQQQ 221
           GFG TFS+ SA P       ++ G VPYG         S++LC N+VQ Q Q      Q 
Sbjct: 150 GFGLTFSSPSATP------HTAGGYVPYGFS---HGXDSSVLCGNVVQSQQQLVQQQHQL 200

Query: 222 CEIQNYHHHHLQIQQVPDGLNSVSCINDTLAAATSTSSHGNPNHQQQ------YEQNCLY 275
                           P  +N  +   D +  AT T ++ NPNH         Y+QNCLY
Sbjct: 201 -------------LYPPSDMNVAA---DPITTATIT-TYPNPNHHHHHHHHHPYQQNCLY 243

Query: 276 HDINPIVGTIGSTLSLST 293
            +IN +VG++G +LSLS+
Sbjct: 244 DEINSLVGSVGPSLSLSS 261

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357492755|ref|XP_003616666.1| Ethylene-responsive transcription factor [Medicago truncatula] gi|355518001|gb|AES99624.1| Ethylene-responsive transcription factor [Medicago truncatula]

 Score =  191 bits (484), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 149/313 (47%), Positives = 183/313 (58%), Gaps = 49/313 (15%)

Query: 50  KKCKGKGGPDNSKFRYRGVRQRSWGKWVAEIREPRKRTRKWLGTFATAEDAARAYDRAAI 109
           +KCKGKGGPDN+KFRYRGVRQRSWGKWVAEIREPRKRTRKWLGTF+TAEDAA+AYDRAAI
Sbjct: 51  RKCKGKGGPDNNKFRYRGVRQRSWGKWVAEIREPRKRTRKWLGTFSTAEDAAKAYDRAAI 110

Query: 110 ILYGSRAQLNLQPSTSSSSSHSSNSTRGGGGGGSSSSNSSQQTLRPLLPRPTGFGFTFSA 169
           ILYGSRAQLNLQPS SSSSS +S+S+       +SSS++S  TLRPLLPRP+GF      
Sbjct: 111 ILYGSRAQLNLQPSASSSSSQNSSSSS-----RNSSSSNSNTTLRPLLPRPSGF------ 159

Query: 170 SSANPAAGAGLSSSSGLVPYGVYPNIMSVSSALLCPN---IVQVQNQRDMMMQQQCEIQN 226
                      S  +  VP+GVY N       +   N   +V   +     M Q    Q+
Sbjct: 160 -----------SVYNNFVPFGVYNNFHHHHQPVFYNNNNGLVHFHHNPHQEMVQVQVQQH 208

Query: 227 YHHHHLQIQQVPDGLNSVSCINDTLAAATSTSSHGNPNHQQQYEQNCL-----YHDINPI 281
             +HH Q+ Q  +  +  S  + T       SSH +   Q+Q+ QN L      H +N  
Sbjct: 209 QQYHHQQLNQDFEHASGDSVKSITSYGQNIHSSHHHD--QEQHAQNVLNQQHAQHVLNQQ 266

Query: 282 VGT------IGSTLSLSTQVAHAPPAEAAAAPDPNMSVGP--GSP-SIWP-LTNEEDYPP 331
                    +GS+ +  +Q  +    +     DP   VG   GSP S+WP LT+EEDY  
Sbjct: 267 QQQMNIQNCVGSS-NFGSQ--NNNDIDGTVDLDP---VGDCVGSPNSMWPALTSEEDY-T 319

Query: 332 TCLWDYTDPFLFD 344
           T LWDY DPF FD
Sbjct: 320 TSLWDYNDPFFFD 332

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255574822|ref|XP_002528318.1| hypothetical protein RCOM_0839150 [Ricinus communis] gi|223532273|gb|EEF34076.1| hypothetical protein RCOM_0839150 [Ricinus communis]

 Score =  181 bits (459), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 115/174 (66%), Positives = 134/174 (77%), Gaps = 11/174 (6%)

Query: 50  KKCKGKGGPDNSKFRYRGVRQRSWGKWVAEIREPRKRTRKWLGTFATAEDAARAYDRAAI 109
           +KCKG+GGPDN+KFRYRGVRQRSWGKWVAEIREPRKRTRKWLGTFATAEDAARAYDRAAI
Sbjct: 62  RKCKGRGGPDNNKFRYRGVRQRSWGKWVAEIREPRKRTRKWLGTFATAEDAARAYDRAAI 121

Query: 110 ILYGSRAQLNLQPSTSSSSSHSSNSTRGGGGGGSSSSNSSQQTLRPLLPRPTGFGFTFSA 169
           ILYGSRAQLNLQPS SSS+  SS+S+        +SS+SS QTLRPLLPRP+ FGFTFS 
Sbjct: 122 ILYGSRAQLNLQPSNSSSTQSSSSSSSSSSSSTRASSSSSSQTLRPLLPRPSAFGFTFSL 181

Query: 170 SSANPAAGAGLSSSSGLVPYGVY----PNIMSVSSALLCPNIVQVQNQRDMMMQ 219
           SS  PA  +   +      YGV+     N+   SS +LCP  + VQNQ++ ++Q
Sbjct: 182 SSTPPAVSSEFGT------YGVFQHQNQNVNVGSSPVLCPANI-VQNQQEQLLQ 228

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297736582|emb|CBI25453.3| unnamed protein product [Vitis vinifera]

 Score =  181 bits (458), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 110/166 (66%), Positives = 124/166 (74%), Gaps = 18/166 (10%)

Query: 41  NNNNNNNNNKKCKGKGGPDNSKFRYRGVRQRSWGKWVAEIREPRKRTRKWLGTFATAEDA 100
            +N +N N++KCKGKGGPDNSKF+YRGVRQRSWGKWVAEIREPRKRTRKWLGTFATAEDA
Sbjct: 37  GDNGSNGNSRKCKGKGGPDNSKFKYRGVRQRSWGKWVAEIREPRKRTRKWLGTFATAEDA 96

Query: 101 ARAYDRAAIILYGSRAQLNLQPSTSSSSSHSSNSTRGGGGGGSSSSNSSQQTLRPLLPRP 160
           ARAYDRAAIILYGSRAQLNLQPS SS+SS S  S+    G          QTLRPLLPRP
Sbjct: 97  ARAYDRAAIILYGSRAQLNLQPSVSSASSSSRGSSSSSSG---------TQTLRPLLPRP 147

Query: 161 TGFGFTFSASSANPAAGAGLSSSSGLVPYGVYPNIMSVSSALLCPN 206
           +GFG TFS+ SA P       ++ G VPYG    +    S++LC N
Sbjct: 148 SGFGLTFSSPSATP------HTAGGYVPYGFSHGM---DSSVLCGN 184

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|48479372|gb|AAT44957.1| putative AP2/EREBP transcription factor [Arabidopsis thaliana]

 Score =  174 bits (441), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 140/307 (45%), Positives = 171/307 (55%), Gaps = 37/307 (12%)

Query: 50  KKCKGKGGPDNSKFRYRGVRQRSWGKWVAEIREPRKRTRKWLGTFATAEDAARAYDRAAI 109
           +K KGKGGPDNSKFRYRGVRQRSWGKWVAEIREPRKRTRKWLGTFATAEDAARAYDRAA+
Sbjct: 40  RKRKGKGGPDNSKFRYRGVRQRSWGKWVAEIREPRKRTRKWLGTFATAEDAARAYDRAAV 99

Query: 110 ILYGSRAQLNLQPSTSSSSSHSSNSTRGGGGGGSSSSNSSQQTLRPLLPRPTGFGFTFSA 169
            LYGSRAQLNL PS+ SS S SS+S         S+S+SS QTLRPLLPRP         
Sbjct: 100 YLYGSRAQLNLTPSSPSSVSSSSSSVS--AASSPSTSSSSTQTLRPLLPRP--------- 148

Query: 170 SSANPAAGAGLSSSSGLVPYGVYPN---IMSVSSALLCPNIVQVQNQRDMMMQQQCEIQN 226
                 A A +   +   PYG+  N    ++  +++LCP+      Q+      Q     
Sbjct: 149 ------AAATVGGGANFGPYGIPFNNNIFLNGGTSMLCPSYGFFPQQQQQNQMVQM--GQ 200

Query: 227 YHHHHLQIQQVPDGLNSVSCINDT-LAAATSTSSHGNPNHQQQY-----EQNCLYHDINP 280
           + H   Q        N +S I  T +  A STS H      Q+        N    D+N 
Sbjct: 201 FQHQQYQNLHSNTNNNKISDIELTDVPVANSTSFHHEVALGQEQGGSGCNNNSSMEDLNS 260

Query: 281 IVGTIGSTLSLSTQVAHAPPA---EAAAAPDPNMSVGPGSPSIWPLTNEEDYPPT--CLW 335
           + G++GS+LS    + H PP      +   DP   VG GS +IWP   EE+Y      +W
Sbjct: 261 LAGSVGSSLS----ITHPPPLVDPVCSMGLDPGYMVGDGSSTIWPFGGEEEYSHNWGSIW 316

Query: 336 DYTDPFL 342
           D+ DP L
Sbjct: 317 DFIDPIL 323

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|116831149|gb|ABK28529.1| unknown [Arabidopsis thaliana]

 Score =  174 bits (440), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 139/307 (45%), Positives = 172/307 (56%), Gaps = 36/307 (11%)

Query: 50  KKCKGKGGPDNSKFRYRGVRQRSWGKWVAEIREPRKRTRKWLGTFATAEDAARAYDRAAI 109
           +K KGKGGPDNSKFRYRGVRQRSWGKWVAEIREPRKRTRKWLGTFATAEDAARAYDRAA+
Sbjct: 40  RKRKGKGGPDNSKFRYRGVRQRSWGKWVAEIREPRKRTRKWLGTFATAEDAARAYDRAAV 99

Query: 110 ILYGSRAQLNLQPSTSSSSSHSSNSTRGGGGGGSSSSNSSQQTLRPLLPRPTGFGFTFSA 169
            LYGSRAQLNL PS+ SS S SS+S         S+S+SS QTLRPLLPRP         
Sbjct: 100 YLYGSRAQLNLTPSSPSSVSSSSSSVS--AASSPSTSSSSTQTLRPLLPRP--------- 148

Query: 170 SSANPAAGAGLSSSSGLVPYGVYPN---IMSVSSALLCPNIVQVQNQRDMMMQQQCEIQN 226
                 A A +   +   PYG+  N    ++  +++LCP+      Q+    Q       
Sbjct: 149 ------AAATVGGGANFGPYGIPFNNNIFLNGGTSMLCPSYGFFPQQQQQQNQMVQM-GQ 201

Query: 227 YHHHHLQIQQVPDGLNSVSCINDTLAAATSTSS--HGNPNHQQQYEQNC----LYHDINP 280
           + H   Q        N +S I  T    T+++S  H     Q+Q    C       D+N 
Sbjct: 202 FQHQQYQNLHSNTNNNKISDIELTDVPVTNSTSFHHEVALGQEQGGSGCNNNSSMEDLNS 261

Query: 281 IVGTIGSTLSLSTQVAHAPPA---EAAAAPDPNMSVGPGSPSIWPLTNEEDYPPT--CLW 335
           + G++GS+LS    + H PP      +   DP   VG GS +IWP   EE+Y      +W
Sbjct: 262 LAGSVGSSLS----ITHPPPLVDPVCSMGLDPGYMVGDGSSTIWPFGGEEEYSHNWGSIW 317

Query: 336 DYTDPFL 342
           D+ DP L
Sbjct: 318 DFIDPIL 324

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15225661|ref|NP_181551.1| ethylene-responsive transcription factor ABI4 [Arabidopsis thaliana] gi|156630458|sp|A0MES8.2|ABI4_ARATH RecName: Full=Ethylene-responsive transcription factor ABI4; Short=ERF ABI4; AltName: Full=Protein ABSCISIC ACID INSENSITIVE 4; AltName: Full=Protein GLUCOSE INSENSITIVE 6; AltName: Full=Protein IMPAIRED SUCROSE INDUCTION 3; AltName: Full=Protein SALOBRENO 5; AltName: Full=Protein SUCROSE UNCOUPLED 6; AltName: Full=Protein SUGAR INSENSITIVE 5 gi|4587996|gb|AAD25937.1|AF085279_10 ABI4 [Arabidopsis thaliana] gi|3282693|gb|AAC39489.1| AP2 domain family transcription factor homolog [Arabidopsis thaliana] gi|91806337|gb|ABE65896.1| abscisic acid-insensitive 4 [Arabidopsis thaliana] gi|330254704|gb|AEC09798.1| ethylene-responsive transcription factor ABI4 [Arabidopsis thaliana]

 Score =  173 bits (439), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 139/307 (45%), Positives = 172/307 (56%), Gaps = 36/307 (11%)

Query: 50  KKCKGKGGPDNSKFRYRGVRQRSWGKWVAEIREPRKRTRKWLGTFATAEDAARAYDRAAI 109
           +K KGKGGPDNSKFRYRGVRQRSWGKWVAEIREPRKRTRKWLGTFATAEDAARAYDRAA+
Sbjct: 40  RKRKGKGGPDNSKFRYRGVRQRSWGKWVAEIREPRKRTRKWLGTFATAEDAARAYDRAAV 99

Query: 110 ILYGSRAQLNLQPSTSSSSSHSSNSTRGGGGGGSSSSNSSQQTLRPLLPRPTGFGFTFSA 169
            LYGSRAQLNL PS+ SS S SS+S         S+S+SS QTLRPLLPRP         
Sbjct: 100 YLYGSRAQLNLTPSSPSSVSSSSSSVS--AASSPSTSSSSTQTLRPLLPRP--------- 148

Query: 170 SSANPAAGAGLSSSSGLVPYGVYPN---IMSVSSALLCPNIVQVQNQRDMMMQQQCEIQN 226
                 A A +   +   PYG+  N    ++  +++LCP+      Q+    Q       
Sbjct: 149 ------AAATVGGGANFGPYGIPFNNNIFLNGGTSMLCPSYGFFPQQQQQQNQMVQM-GQ 201

Query: 227 YHHHHLQIQQVPDGLNSVSCINDTLAAATSTSS--HGNPNHQQQYEQNC----LYHDINP 280
           + H   Q        N +S I  T    T+++S  H     Q+Q    C       D+N 
Sbjct: 202 FQHQQYQNLHSNTNNNKISDIELTDVPVTNSTSFHHEVALGQEQGGSGCNNNSSMEDLNS 261

Query: 281 IVGTIGSTLSLSTQVAHAPPA---EAAAAPDPNMSVGPGSPSIWPLTNEEDYPPT--CLW 335
           + G++GS+LS    + H PP      +   DP   VG GS +IWP   EE+Y      +W
Sbjct: 262 LAGSVGSSLS----ITHPPPLVDPVCSMGLDPGYMVGDGSSTIWPFGGEEEYSHNWGSIW 317

Query: 336 DYTDPFL 342
           D+ DP L
Sbjct: 318 DFIDPIL 324

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	349
TAIR|locus:2005490	328	ABI4 "ABA INSENSITIVE 4" [Arab	0.779	0.829	0.369	1.8e-39
UNIPROTKB|C7J2Z1	269	ABI4 "Ethylene-responsive tran	0.318	0.412	0.504	1.8e-29
TAIR|locus:2085527	330	DREB2B "DRE/CRT-binding protei	0.200	0.212	0.577	5.7e-20
UNIPROTKB|Q5W6R4	373	DREB2B "Dehydration-responsive	0.200	0.187	0.507	3.4e-17
TAIR|locus:2063073	341	DREB2C [Arabidopsis thaliana (	0.203	0.208	0.541	3.7e-17
TAIR|locus:2076621	277	AT3G57600 [Arabidopsis thalian	0.194	0.245	0.558	6.7e-17
TAIR|locus:2146248	307	AT5G18450 [Arabidopsis thalian	0.203	0.231	0.555	1.1e-16
TAIR|locus:2005704	206	AT1G75490 [Arabidopsis thalian	0.203	0.344	0.541	1.8e-16
UNIPROTKB|Q84ZA1	230	DREB2C "Dehydration-responsive	0.203	0.308	0.541	2.3e-16
TAIR|locus:2153504	335	DREB2A "AT5G05410" [Arabidopsi	0.200	0.208	0.535	1.2e-15

TAIR|locus:2005490 ABI4 "ABA INSENSITIVE 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 421 (153.3 bits), Expect = 1.8e-39, P = 1.8e-39
 Identities = 113/306 (36%), Positives = 139/306 (45%)

Query:    50 KKCKGKGGPDNSKFRYRGVRQRSWGKWVAEIREPRKRTRKWLGTFXXXXXXXXXXXXXXI 109
             +K KGKGGPDNSKFRYRGVRQRSWGKWVAEIREPRKRTRKWLGTF              +
Sbjct:    40 RKRKGKGGPDNSKFRYRGVRQRSWGKWVAEIREPRKRTRKWLGTFATAEDAARAYDRAAV 99

Query:   110 ILYGSRAQLNLQPXXXXXXXXXXXXXXXXXXXXXXXXXXXQQTLRPLLPRPTGFGFTFXX 169
              LYGSRAQLNL P                            QTLRPLLPRP         
Sbjct:   100 YLYGSRAQLNLTPSSPSSVSSSSSSVSAASSPSTSSSST--QTLRPLLPRPAA------- 150

Query:   170 XXXXXXXXXXXXXXXXLVPYGVYPNI-MSVSSALLCPN---IVQVQNQRDMMMQQ-QCEI 224
                              +P+    NI ++  +++LCP+     Q Q Q++ M+Q  Q + 
Sbjct:   151 ----ATVGGGANFGPYGIPFN--NNIFLNGGTSMLCPSYGFFPQQQQQQNQMVQMGQFQH 204

Query:   225 QNYHHHHLQIQQVPDGLNSVSCINDTLAAAT-STSSH-----GNPNHQQQYEQNCLYHDI 278
             Q Y + H          N +S I  T    T STS H     G          N    D+
Sbjct:   205 QQYQNLHSNTNN-----NKISDIELTDVPVTNSTSFHHEVALGQEQGGSGCNNNSSMEDL 259

Query:   279 NPIVGTIGSTLSLSTQVXXXXXXXXXXXXXXNMSVGPGSPSIWPLTNEEDYPPT--CLWD 336
             N + G++GS+LS+ T                   VG GS +IWP   EE+Y      +WD
Sbjct:   260 NSLAGSVGSSLSI-THPPPLVDPVCSMGLDPGYMVGDGSSTIWPFGGEEEYSHNWGSIWD 318

Query:   337 YTDPFL 342
             + DP L
Sbjct:   319 FIDPIL 324

GO:0003677 "DNA binding" evidence=IEA;ISS;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS;TAS

GO:0009747 "hexokinase-dependent signaling" evidence=NAS

GO:0006970 "response to osmotic stress" evidence=IMP

GO:0009738 "abscisic acid mediated signaling pathway" evidence=IMP

GO:0009749 "response to glucose stimulus" evidence=IMP

GO:0010896 "regulation of triglyceride catabolic process" evidence=IMP

GO:0010182 "sugar mediated signaling pathway" evidence=RCA;TAS

GO:0009414 "response to water deprivation" evidence=IMP

GO:0005983 "starch catabolic process" evidence=NAS

GO:0010353 "response to trehalose stimulus" evidence=IMP

GO:0031930 "mitochondria-nucleus signaling pathway" evidence=IDA;IMP

GO:0043565 "sequence-specific DNA binding" evidence=IPI

GO:0044212 "transcription regulatory region DNA binding" evidence=IDA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0032880 "regulation of protein localization" evidence=IDA

GO:0048527 "lateral root development" evidence=IMP

GO:0010449 "root meristem growth" evidence=IMP

GO:0009640 "photomorphogenesis" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0009793 "embryo development ending in seed dormancy" evidence=RCA

GO:0009845 "seed germination" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0009933 "meristem structural organization" evidence=RCA

GO:0010162 "seed dormancy process" evidence=RCA

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA

GO:0016567 "protein ubiquitination" evidence=RCA

GO:0019915 "lipid storage" evidence=RCA

GO:0050826 "response to freezing" evidence=RCA

GO:0009744 "response to sucrose stimulus" evidence=IEP

GO:0048316 "seed development" evidence=IMP

UNIPROTKB|C7J2Z1 ABI4 "Ethylene-responsive transcription factor ABI4" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 287 (106.1 bits), Expect = 1.8e-29, Sum P(2) = 1.8e-29
 Identities = 56/111 (50%), Positives = 60/111 (54%)

Query:    50 KKCKGKGGPDNSKFRYRGVRQRSWGKWVAEIREPRKRTRKWLGTFXXXXXXXXXXXXXXI 109
             KK  GKGGP+N KFRYRGVRQRSWGKWVAEIREPRKR+RKWLGTF              +
Sbjct:    35 KKAAGKGGPENGKFRYRGVRQRSWGKWVAEIREPRKRSRKWLGTFATAEDAARAYDRAAL 94

Query:   110 ILYGSRAQLNLQPXXXXXXXXXXXXXXXXXXXXXXXXXXXQQTLRPLLPRP 160
             +LYG RA LNL                                LRPLLPRP
Sbjct:    95 LLYGPRAHLNLTAPPPLPPPPPSSAAAAAASSSSAASSTSAPPLRPLLPRP 145

GO:0005634 "nucleus" evidence=IDA

TAIR|locus:2085527 DREB2B "DRE/CRT-binding protein 2B" [Arabidopsis thaliana (taxid:3702)]

 Score = 208 (78.3 bits), Expect = 5.7e-20, Sum P(2) = 5.7e-20
 Identities = 41/71 (57%), Positives = 45/71 (63%)

Query:    50 KKC-KGKGGPDNSKFRYRGVRQRSWGKWVAEIREPRKRTRKWLGTFXXXXXXXXXXXXXX 108
             K C KGKGGPDNS   +RGVRQR WGKWVAEIREP+  TR WLGTF              
Sbjct:    62 KGCMKGKGGPDNSHCSFRGVRQRIWGKWVAEIREPKIGTRLWLGTFPTAEKAASAYDEAA 121

Query:   109 IILYGSRAQLN 119
               +YGS A+LN
Sbjct:   122 TAMYGSLARLN 132

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0009414 "response to water deprivation" evidence=TAS

GO:0010286 "heat acclimation" evidence=IEP

GO:0009555 "pollen development" evidence=IMP

UNIPROTKB|Q5W6R4 DREB2B "Dehydration-responsive element-binding protein 2B" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 195 (73.7 bits), Expect = 3.4e-17, Sum P(2) = 3.4e-17
 Identities = 36/71 (50%), Positives = 46/71 (64%)

Query:    50 KKC-KGKGGPDNSKFRYRGVRQRSWGKWVAEIREPRKRTRKWLGTFXXXXXXXXXXXXXX 108
             K C KGKGGP+N++  +RGVRQR+WGKWVAEIREP +++R WLGTF              
Sbjct:    73 KGCMKGKGGPENTRCDFRGVRQRTWGKWVAEIREPNQQSRLWLGTFPTAEAAACAYDEAA 132

Query:   109 IILYGSRAQLN 119
               +YG  A+ N
Sbjct:   133 RAMYGPMARTN 143

GO:0003677 "DNA binding" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0009408 "response to heat" evidence=IMP

GO:0009414 "response to water deprivation" evidence=IMP

GO:0009651 "response to salt stress" evidence=IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

TAIR|locus:2063073 DREB2C [Arabidopsis thaliana (taxid:3702)]

 Score = 194 (73.4 bits), Expect = 3.7e-17, Sum P(2) = 3.7e-17
 Identities = 39/72 (54%), Positives = 42/72 (58%)

Query:    50 KKC-KGKGGPDNSKFRYRGVRQRSWGKWVAEIREPRKRTRKWLGTFXXXXXXXXXXXXXX 108
             K C KGKGGP+N    YRGVRQR WGKWVAEIREP    R WLGTF              
Sbjct:    56 KGCMKGKGGPENGICDYRGVRQRRWGKWVAEIREPDGGARLWLGTFSSSYEAALAYDEAA 115

Query:   109 IILYGSRAQLNL 120
               +YG  A+LNL
Sbjct:   116 KAIYGQSARLNL 127

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;IDA

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0010286 "heat acclimation" evidence=IEP

GO:0005515 "protein binding" evidence=IPI

GO:0009737 "response to abscisic acid stimulus" evidence=IMP

TAIR|locus:2076621 AT3G57600 [Arabidopsis thaliana (taxid:3702)]

 Score = 208 (78.3 bits), Expect = 6.7e-17, P = 6.7e-17
 Identities = 38/68 (55%), Positives = 45/68 (66%)

Query:    53 KGKGGPDNSKFRYRGVRQRSWGKWVAEIREPRKRTRKWLGTFXXXXXXXXXXXXXXIILY 112
             +GKGGP N+  +YRGVRQR+WGKWVAEIREP+KR R WLG+F              + LY
Sbjct:    16 RGKGGPQNALCQYRGVRQRTWGKWVAEIREPKKRARLWLGSFATAEEAAMAYDEAALKLY 75

Query:   113 GSRAQLNL 120
             G  A LNL
Sbjct:    76 GHDAYLNL 83

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0010093 "specification of floral organ identity" evidence=RCA

GO:0048440 "carpel development" evidence=RCA

GO:0048507 "meristem development" evidence=RCA

TAIR|locus:2146248 AT5G18450 [Arabidopsis thaliana (taxid:3702)]

 Score = 206 (77.6 bits), Expect = 1.1e-16, P = 1.1e-16
 Identities = 40/72 (55%), Positives = 46/72 (63%)

Query:    50 KKC-KGKGGPDNSKFRYRGVRQRSWGKWVAEIREPRKRTRKWLGTFXXXXXXXXXXXXXX 108
             K C KGKGGP+N+   +RGVRQR+WGKWVAEIREP + TR WLGTF              
Sbjct:    18 KGCMKGKGGPENATCTFRGVRQRTWGKWVAEIREPNRGTRLWLGTFNTSVEAAMAYDEAA 77

Query:   109 IILYGSRAQLNL 120
               LYG  A+LNL
Sbjct:    78 KKLYGHEAKLNL 89

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

TAIR|locus:2005704 AT1G75490 [Arabidopsis thaliana (taxid:3702)]

 Score = 204 (76.9 bits), Expect = 1.8e-16, P = 1.8e-16
 Identities = 39/72 (54%), Positives = 44/72 (61%)

Query:    50 KKC-KGKGGPDNSKFRYRGVRQRSWGKWVAEIREPRKRTRKWLGTFXXXXXXXXXXXXXX 108
             K C +GKGGPDN+   Y+GVRQR+WGKWVAEIREP +  R WLGTF              
Sbjct:    26 KGCMRGKGGPDNASCTYKGVRQRTWGKWVAEIREPNRGARLWLGTFDTSREAALAYDSAA 85

Query:   109 IILYGSRAQLNL 120
               LYG  A LNL
Sbjct:    86 RKLYGPEAHLNL 97

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0010200 "response to chitin" evidence=IEP

UNIPROTKB|Q84ZA1 DREB2C "Dehydration-responsive element-binding protein 2C" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 203 (76.5 bits), Expect = 2.3e-16, P = 2.3e-16
 Identities = 39/72 (54%), Positives = 45/72 (62%)

Query:    50 KKC-KGKGGPDNSKFRYRGVRQRSWGKWVAEIREPRKRTRKWLGTFXXXXXXXXXXXXXX 108
             K C KGKGGP+N +  +RGVRQR+WGKWVAEIREP +  R WLGTF              
Sbjct:    39 KGCMKGKGGPENQRCPFRGVRQRTWGKWVAEIREPNRGARLWLGTFNTALDAARAYDSAA 98

Query:   109 IILYGSRAQLNL 120
               LYG  A+LNL
Sbjct:    99 RALYGDCARLNL 110

GO:0005634 "nucleus" evidence=IDA

TAIR|locus:2153504 DREB2A "AT5G05410" [Arabidopsis thaliana (taxid:3702)]

 Score = 199 (75.1 bits), Expect = 1.2e-15, P = 1.2e-15
 Identities = 38/71 (53%), Positives = 45/71 (63%)

Query:    50 KKC-KGKGGPDNSKFRYRGVRQRSWGKWVAEIREPRKRTRKWLGTFXXXXXXXXXXXXXX 108
             K C KGKGGP+NS+  +RGVRQR WGKWVAEIREP + +R WLGTF              
Sbjct:    63 KGCMKGKGGPENSRCSFRGVRQRIWGKWVAEIREPNRGSRLWLGTFPTAQEAASAYDEAA 122

Query:   109 IILYGSRAQLN 119
               +YG  A+LN
Sbjct:   123 KAMYGPLARLN 133

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA

GO:0005634 "nucleus" evidence=ISM;ISS;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0009414 "response to water deprivation" evidence=IMP;TAS

GO:0010224 "response to UV-B" evidence=IEP;IGI

GO:0010286 "heat acclimation" evidence=IEP;RCA

GO:0009408 "response to heat" evidence=IMP

GO:0042542 "response to hydrogen peroxide" evidence=IEP;RCA

GO:0005515 "protein binding" evidence=IPI

GO:0006457 "protein folding" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	ABI4-1	SubName- Full=Abscisic acid insensitive 4-1; (412 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	NAC089	NAC domain protein, IPR003441 (156 aa)							•		0.700

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	349
smart00380	64	smart00380, AP2, DNA-binding domain in plant prote	6e-36
cd00018	61	cd00018, AP2, DNA-binding domain found in transcri	3e-32
pfam00847	53	pfam00847, AP2, AP2 domain	2e-17

>gnl|CDD|197689 smart00380, AP2, DNA-binding domain in plant proteins such as APETALA2 and EREBPs

 Score =  124 bits (313), Expect = 6e-36
 Identities = 42/64 (65%), Positives = 46/64 (71%)

Query: 64  RYRGVRQRSWGKWVAEIREPRKRTRKWLGTFATAEDAARAYDRAAIILYGSRAQLNLQPS 123
           +YRGVRQR WGKWVAEIR+P K  R WLGTF TAE+AARAYDRAA    G  A+LN   S
Sbjct: 1   KYRGVRQRPWGKWVAEIRDPSKGKRVWLGTFDTAEEAARAYDRAAFKFRGRSARLNFPNS 60

Query: 124 TSSS 127
              S
Sbjct: 61  LYDS 64

Length = 64

>gnl|CDD|237985 cd00018, AP2, DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein)

 Score =  114 bits (288), Expect = 3e-32
 Identities = 42/60 (70%), Positives = 46/60 (76%)

Query: 64  RYRGVRQRSWGKWVAEIREPRKRTRKWLGTFATAEDAARAYDRAAIILYGSRAQLNLQPS 123
           +YRGVRQR WGKWVAEIR+P    R WLGTF TAE+AARAYDRAA+ L GS A LN   S
Sbjct: 2   KYRGVRQRPWGKWVAEIRDPSGGRRIWLGTFDTAEEAARAYDRAALKLRGSSAVLNFPDS 61

In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies. Length = 61

>gnl|CDD|216148 pfam00847, AP2, AP2 domain

 Score = 74.6 bits (184), Expect = 2e-17
 Identities = 28/53 (52%), Positives = 35/53 (66%), Gaps = 4/53 (7%)

Query: 64  RYRGVRQR-SWGKWVAEIREP--RKRTRKWLGTFATAEDAARAYDRAAIILYG 113
            Y+GVR    WG+WVAEIR+P  +K+ R  LGTF T E+AARA   A + L G
Sbjct: 2   GYKGVRYDKRWGRWVAEIRDPGEKKKKRFSLGTFGT-EEAARAAIAARLKLRG 53

This 60 amino acid residue domain can bind to DNA and is found in transcription factor proteins. Length = 53

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	349
cd00018	61	AP2 DNA-binding domain found in transcription regu	99.8
smart00380	64	AP2 DNA-binding domain in plant proteins such as A	99.8
PHA00280	121	putative NHN endonuclease	99.78
PF00847	56	AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-	99.14
PF14657	46	Integrase_AP2: AP2-like DNA-binding integrase doma	86.32

>cd00018 AP2 DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein)

Probab=99.80  E-value=1.1e-19  Score=135.98  Aligned_cols=61  Identities=69%  Similarity=1.115  Sum_probs=56.7

Q ss_pred             CceeeEEECCCCcEEEEEecCCCCceEeccCCCCHHHHHHHHHHHHHHHhCCCCCCCCCCC
Q 038194           63 FRYRGVRQRSWGKWVAEIREPRKRTRKWLGTFATAEDAARAYDRAAIILYGSRAQLNLQPS  123 (349)
Q Consensus        63 SgYRGVr~r~~GKW~ArI~~~gkkKri~LGTFdTeEEAArAYDrAAikl~G~~A~lNFp~s  123 (349)
                      |+||||+++++|||+|+|+++..++++|||+|+|+||||+|||+|+++++|.++++||+++
T Consensus         1 s~~~GV~~~~~gkw~A~I~~~~~gk~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~   61 (61)
T cd00018           1 SKYRGVRQRPWGKWVAEIRDPSGGRRIWLGTFDTAEEAARAYDRAALKLRGSSAVLNFPDS   61 (61)
T ss_pred             CCccCEEECCCCcEEEEEEeCCCCceEccCCCCCHHHHHHHHHHHHHHhcCCccccCCCCC
Confidence            6899998777799999999976688899999999999999999999999999999999974

In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies.

>smart00380 AP2 DNA-binding domain in plant proteins such as APETALA2 and EREBPs

Probab=99.80  E-value=1.9e-19  Score=136.55  Aligned_cols=64  Identities=66%  Similarity=1.083  Sum_probs=60.0

Q ss_pred             ceeeEEECCCCcEEEEEecCCCCceEeccCCCCHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCC
Q 038194           64 RYRGVRQRSWGKWVAEIREPRKRTRKWLGTFATAEDAARAYDRAAIILYGSRAQLNLQPSTSSS  127 (349)
Q Consensus        64 gYRGVr~r~~GKW~ArI~~~gkkKri~LGTFdTeEEAArAYDrAAikl~G~~A~lNFp~s~y~a  127 (349)
                      +||||+++++|||+|+|+++.+++++|||+|+|+||||+|||+|+++++|.++++||+.+.|++
T Consensus         1 ~~kGV~~~~~gkw~A~I~~~~~~k~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~~y~~   64 (64)
T smart00380        1 KYRGVRQRPWGKWVAEIRDPSKGKRVWLGTFDTAEEAARAYDRAAFKFRGRSARLNFPNSLYDS   64 (64)
T ss_pred             CEeeEEeCCCCeEEEEEEecCCCcEEecCCCCCHHHHHHHHHHHHHHhcCCccccCCCCccCCC
Confidence            5999977888999999999888889999999999999999999999999999999999998853

>PHA00280 putative NHN endonuclease

Probab=99.78  E-value=1.6e-19  Score=154.71  Aligned_cols=81  Identities=12%  Similarity=0.114  Sum_probs=73.2

Q ss_pred             CccCCCCCCCcCCcCcccCCCCCCCCCCCCceeeE-EECCCCcEEEEEecCCCCceEeccCCCCHHHHHHHHHHHHHHHh
Q 038194           34 NTCNNSSNNNNNNNNNKKCKGKGGPDNSKFRYRGV-RQRSWGKWVAEIREPRKRTRKWLGTFATAEDAARAYDRAAIILY  112 (349)
Q Consensus        34 sscN~psNLR~aTrsqN~rN~r~~~~nnkSgYRGV-r~r~~GKW~ArI~~~gkkKri~LGTFdTeEEAArAYDrAAikl~  112 (349)
                      ..+|+++|||++|+.+|.+|+ +..++++|||||| |++..|||+|+|++  .+|+++||.|+++|||+.||+ ++++||
T Consensus        39 ~~dnri~NLr~~T~~eN~~N~-~~~~~N~SG~kGV~~~k~~~kw~A~I~~--~gK~~~lG~f~~~e~A~~a~~-~~~~lh  114 (121)
T PHA00280         39 PLNDALDNLRLALPKENSWNM-KTPKSNTSGLKGLSWSKEREMWRGTVTA--EGKQHNFRSRDLLEVVAWIYR-TRRELH  114 (121)
T ss_pred             CCCCcHHHhhhcCHHHHhccc-CCCCCCCCCCCeeEEecCCCeEEEEEEE--CCEEEEcCCCCCHHHHHHHHH-HHHHHh
Confidence            567899999999999999995 4677899999999 68889999999998  777799999999999999997 788999


Q ss_pred             CCCCCC
Q 038194          113 GSRAQL  118 (349)
Q Consensus       113 G~~A~l  118 (349)
                      |+||+.
T Consensus       115 GeFa~~  120 (121)
T PHA00280        115 GQFARF  120 (121)
T ss_pred             hccccC
Confidence            999853

>PF00847 AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-related genes transcriptional activator binds to the GCC-box pathogenesis-related promoter element and activates the plant's defence genes

Probab=99.14  E-value=9.2e-11  Score=85.69  Aligned_cols=52  Identities=38%  Similarity=0.507  Sum_probs=45.3

Q ss_pred             CceeeE-EECCCCcEEEEEecCC---CCceEeccCCCCHHHHHHHHHHHHHHHhCC
Q 038194           63 FRYRGV-RQRSWGKWVAEIREPR---KRTRKWLGTFATAEDAARAYDRAAIILYGS  114 (349)
Q Consensus        63 SgYRGV-r~r~~GKW~ArI~~~g---kkKri~LGTFdTeEEAArAYDrAAikl~G~  114 (349)
                      |+|+|| +.+..++|+|+|++..   ++++++||.|+++|||++||++++++++|+
T Consensus         1 s~~~GV~~~~~~~~W~a~i~~~~~~g~~k~f~~g~fg~~~eA~~~a~~~r~~~~~e   56 (56)
T PF00847_consen    1 SGYKGVSWDKRRGRWRAQIRVWSENGKRKRFSVGKFGFEEEAKRAAIEARKELEGE   56 (56)
T ss_dssp             SSSTTEEEETTTTEEEEEEEECCCTTEEEEEEECCCCCHHHHHHHHHHHHHHCTS-
T ss_pred             CCcEEEEEcCCCCEEEEEEEEcccCcccEEEeCccCCCHHHHHHHHHHHHHHhcCC
Confidence            689999 5778899999999831   148899999999999999999999999875

Ethylene, chemically the simplest plant hormone, participates in a number of stress responses and developmental processes: e.g., fruit ripening, inhibition of stem and root elongation, promotion of seed germination and flowering, senescence of leaves and flowers, and sex determination []. DNA sequence elements that confer ethylene responsiveness have been shown to contain two 11bp GCC boxes, which are necessary and sufficient for transcriptional control by ethylene. Ethylene responsive element binding proteins (EREBPs) have now been identified in a variety of plants. The proteins share a similar domain of around 59 amino acids, which interacts directly with the GCC box in the ERE.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 3IGM_A 3GCC_A 1GCC_A 2GCC_A.

>PF14657 Integrase_AP2: AP2-like DNA-binding integrase domain

Probab=86.32  E-value=2.2  Score=30.55  Aligned_cols=38  Identities=24%  Similarity=0.344  Sum_probs=30.8

Q ss_pred             cEEEEEe--c--CCCCceEeccCCCCHHHHHHHHHHHHHHHh
Q 038194           75 KWVAEIR--E--PRKRTRKWLGTFATAEDAARAYDRAAIILY  112 (349)
Q Consensus        75 KW~ArI~--~--~gkkKri~LGTFdTeEEAArAYDrAAikl~  112 (349)
                      +|..+|.  .  .++.++++-+-|.|..||..+..++..++.
T Consensus         1 ~w~~~v~g~~~~~Gkrk~~~k~GF~TkkeA~~~~~~~~~~~~   42 (46)
T PF14657_consen    1 TWYYRVYGYDDETGKRKQKTKRGFKTKKEAEKALAKIEAELE   42 (46)
T ss_pred             CEEEEEEEEECCCCCEEEEEcCCCCcHHHHHHHHHHHHHHHH
Confidence            6888883  3  466688999999999999999988777664

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	349
1gcc_A	63	Solution Nmr Structure Of The Complex Of Gcc-Box Bi		3e-08
2gcc_A	70	Solution Structure Of The Gcc-Box Binding Domain, N		3e-08

>pdb|1GCC|A Chain A, Solution Nmr Structure Of The Complex Of Gcc-Box Binding Domain Of Aterf1 And Gcc-Box Dna, Minimized Average Structure Length = 63

Iteration: 1
 Score = 55.8 bits (133), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 28/57 (49%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 65  YRGVRQRSWGKWVAEIREPRKR-TRKWLGTFXXXXXXXXXXXXXXIILYGSRAQLNL 120
           YRGVRQR WGK+ AEIR+P K   R WLGTF                + GSRA LN 
Sbjct: 3   YRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNF 59

>pdb|2GCC|A Chain A, Solution Structure Of The Gcc-Box Binding Domain, Nmr, Minimized Mean Structure Length = 70

Iteration: 1
 Score = 55.8 bits (133), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 28/57 (49%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 65  YRGVRQRSWGKWVAEIREPRKR-TRKWLGTFXXXXXXXXXXXXXXIILYGSRAQLNL 120
           YRGVRQR WGK+ AEIR+P K   R WLGTF                + GSRA LN 
Sbjct: 6   YRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNF 62

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	349
1gcc_A	63	Ethylene responsive element binding factor 1; tran	2e-33

>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A Length = 63

 Score =  117 bits (295), Expect = 2e-33
 Identities = 39/57 (68%), Positives = 43/57 (75%), Gaps = 1/57 (1%)

Query: 64  RYRGVRQRSWGKWVAEIREP-RKRTRKWLGTFATAEDAARAYDRAAIILYGSRAQLN 119
            YRGVRQR WGK+ AEIR+P +   R WLGTF TAEDAA AYDRAA  + GSRA LN
Sbjct: 2   HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLN 58

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	349
1gcc_A	63	Ethylene responsive element binding factor 1; tran	99.86
1u3e_M	174	HNH homing endonuclease; HNH catalytic motif, heli	97.53
3igm_B	77	PF14_0633 protein; AP2 domain, specific transcript	90.64

>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A

Probab=99.86  E-value=1.4e-22  Score=154.10  Aligned_cols=60  Identities=67%  Similarity=1.049  Sum_probs=56.4

Q ss_pred             ceeeEEECCCCcEEEEEecCCC-CceEeccCCCCHHHHHHHHHHHHHHHhCCCCCCCCCCC
Q 038194           64 RYRGVRQRSWGKWVAEIREPRK-RTRKWLGTFATAEDAARAYDRAAIILYGSRAQLNLQPS  123 (349)
Q Consensus        64 gYRGVr~r~~GKW~ArI~~~gk-kKri~LGTFdTeEEAArAYDrAAikl~G~~A~lNFp~s  123 (349)
                      +||||+++++|||+|+|+++.+ ++++|||+|+|+||||+|||+|+++++|.++++|||.+
T Consensus         2 ~yrGV~~r~~gkw~A~I~~~~~~g~r~~LGtf~T~eeAA~AyD~Aa~~~~G~~a~~NFp~~   62 (63)
T 1gcc_A            2 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR   62 (63)
T ss_dssp             CCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTT
T ss_pred             CcccEeeCCCCcEEEEEccccCCCeEEEeeeCCCHHHHHHHHHHHHHHhcCcccccCCCCc
Confidence            6999987789999999999875 68999999999999999999999999999999999975

>1u3e_M HNH homing endonuclease; HNH catalytic motif, helix-turn-helix DNA binding domain, PR complex, DNA binding protein-DNA complex; 2.92A {Bacillus phage SPO1} SCOP: d.4.1.3 d.285.1.1

Probab=97.53  E-value=6.2e-07  Score=78.01  Aligned_cols=67  Identities=7%  Similarity=-0.108  Sum_probs=49.9

Q ss_pred             CccCCCCCCCcCCcCcccCCCCCCCCCCCCceeeEEECCCCcEEEEEecCCCCceEeccCCCCHHHHHHHHH
Q 038194           34 NTCNNSSNNNNNNNNNKKCKGKGGPDNSKFRYRGVRQRSWGKWVAEIREPRKRTRKWLGTFATAEDAARAYD  105 (349)
Q Consensus        34 sscN~psNLR~aTrsqN~rN~r~~~~nnkSgYRGVr~r~~GKW~ArI~~~gkkKri~LGTFdTeEEAArAYD  105 (349)
                      ..+|+++|||++|+.+|.+++...... . .++||..+..++|.+.|...   +.++||.|++.+|||++|.
T Consensus        80 k~nn~~~NL~~~t~~eN~~~~~~~~~~-~-~~~g~~~~~~~k~~~vi~~~---~~~~~~~f~s~~eAa~~~G  146 (174)
T 1u3e_M           80 KDNNLSTNLRWVTQKINVENQMSRGTL-N-VSKAQQIAKIKNQKPIIVIS---PDGIEKEYPSTKCACEELG  146 (174)
T ss_dssp             TTCCCGGGEEEECHHHHHHHHHHHTCC-C-CHHHHHHHHHHTCCCEEEEC---TTSCEEEESCHHHHHHHHT
T ss_pred             CCCCCHHHcEECCHHHHhhcccccCcc-c-ceeeeeeccCCCCceEEEEc---CCceEEeeCCHHHHHHHHC
Confidence            578899999999999999884332212 1 24677324456799999884   3477999999999999963

>3igm_B PF14_0633 protein; AP2 domain, specific transcription FA protein-DNA complex, transcription-DNA complex; 2.20A {Plasmodium falciparum}

Probab=90.64  E-value=0.18  Score=39.99  Aligned_cols=24  Identities=21%  Similarity=0.363  Sum_probs=20.8

Q ss_pred             CCCCceeeE-EECCCCcEEEEEecC
Q 038194           60 NSKFRYRGV-RQRSWGKWVAEIREP   83 (349)
Q Consensus        60 nnkSgYRGV-r~r~~GKW~ArI~~~   83 (349)
                      ..+|+|+|| |+++.+.|.|.-.+.
T Consensus         3 ~~~Sg~pGVsw~kR~~~WlA~W~e~   27 (77)
T 3igm_B            3 HMSSGYPGVSWNKRMCAWLAFFYDG   27 (77)
T ss_dssp             -CCSSSTTEEEETTTTEEEEEEEET
T ss_pred             CCCCCCCcEEeecCCceEEEEEecC
Confidence            467999999 899999999999985

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	349
d1gcca_	63	d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cr	2e-30

>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 63

class: Alpha and beta proteins (a+b)
fold: DNA-binding domain
superfamily: DNA-binding domain
family: GCC-box binding domain
domain: GCC-box binding domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  108 bits (271), Expect = 2e-30
 Identities = 39/57 (68%), Positives = 43/57 (75%), Gaps = 1/57 (1%)

Query: 64  RYRGVRQRSWGKWVAEIREP-RKRTRKWLGTFATAEDAARAYDRAAIILYGSRAQLN 119
            YRGVRQR WGK+ AEIR+P +   R WLGTF TAEDAA AYDRAA  + GSRA LN
Sbjct: 2   HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLN 58

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	349
d1gcca_	63	GCC-box binding domain {Mouse-ear cress (Arabidops	99.86

>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: DNA-binding domain
superfamily: DNA-binding domain
family: GCC-box binding domain
domain: GCC-box binding domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.86  E-value=1e-22  Score=153.89  Aligned_cols=60  Identities=65%  Similarity=1.036  Sum_probs=55.2

Q ss_pred             ceeeEEECCCCcEEEEEecCC-CCceEeccCCCCHHHHHHHHHHHHHHHhCCCCCCCCCCC
Q 038194           64 RYRGVRQRSWGKWVAEIREPR-KRTRKWLGTFATAEDAARAYDRAAIILYGSRAQLNLQPS  123 (349)
Q Consensus        64 gYRGVr~r~~GKW~ArI~~~g-kkKri~LGTFdTeEEAArAYDrAAikl~G~~A~lNFp~s  123 (349)
                      .||||+++++|||+|+|+++. +++++|||+|+|+||||+|||+|+++++|.++.+|||..
T Consensus         2 ~yrGVr~r~~gkw~A~Ir~~~~~~~r~~LGtf~t~eeAArAYD~aa~~~~G~~a~~NFP~~   62 (63)
T d1gcca_           2 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR   62 (63)
T ss_dssp             CCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTT
T ss_pred             CcceEeECCCCCEEEEEecCCCCCcEeccccccCHHHHHHHHHHHHHHhcCCCcccCCCcc
Confidence            599998778899999999864 557899999999999999999999999999999999974