Citrus Sinensis ID: 038195

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170--
Protein Sequence
METEVEIKSPADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSAGDFPATRTEEQTQSSHLRGLHYQWSQHFVEKMKEKVELDPENKTVAMVVIEGDLMKHFKSYKVIIKVIPKSEGSLVKWIWEYEKLQEDGPTPSKYVDFVTDLTKNIDAHLLKEEQN
Secondary Structure (PSIPRED)
cEEEEEEcccHHHHHHHHHcccccccccccccEEEEEEEcccccccccEEEEEEEccccccEEEEccccccccccccccccccEEEEEEEEEEEEccccEEEEEEEccEEcccEEEEEEEEEEEEcccccEEEEEEEEEEccccccccHHHHHHHHHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
cEEEEEEEccHHHHHHHHHcccccccccccccEEEEEEEEcccccccEEEEEEEEccccEEEEEEEEEEEcccccccccccccccEEEEEEEEEcccccEEEEEEEcccHHHHccEEEEEEEEEEcccccEEEEEEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
meteveikspadkfyntfsskahtvpnmspgnlhgvevhegdweshgsvkswtfsagdfpatrteeqtqsshlrglhYQWSQHFVEKMKEKVELDPENKTVAMVVIEGDLMKHFKSYKVIIKVIPKSEGSLVKWIWEYEKlqedgptpskyVDFVTDLTKNIDAHLLKEEQN
Flexible Loop (DISEMBL)
meteveikspadkFYNTFSSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSAGDFPATRTEEQTQSSHLRGLHYQWSQHFVEKMKEKVELDPENKTVAMVVIEGDLMKHFKSYKVIIKvipksegslVKWIWEYEKlqedgptpSKYVDFVTDLTKNIDAHLLKEEQN
Low Complexity Region (SEG)
METEVEIKSPADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSAGDFPATRTEEQTQSSHLRGLHYQWSQHFVEKMKEKVELDPENKTVAMVVIEGDLMKHFKSYKVIIKVIPKSEGSLVKWIWEYEKLQEDGPTPSKYVDFVTDLTKNIDAHLLKEEQN
Disordered region (IsUnstruct)
************************************************VKSWTF******************LRGLHYQWSQHFVEKMKEKVELDPENKTVAMVVIEGDLMKHFKSYKVIIKVIPKSEGSLVKWIWEYEKLQEDGPTPSKYVDFVTDLTKNIDAH*******
Disordered Region (DISOPRED)
METEVEIKSPADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSAGDFPATRTEEQT***HLRGLHYQWSQHFVEKMKEKVELDPENKTVAMVVIEGDLMKHFKSYKVIIKVIPKSEGSLVKWIWEYEKLQEDGPTPSKYVDFVTDLTKNIDA*LL*****
Disordered Region (DISEMBL)
********SPADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSAGDFPA************RGLHYQWSQHFVEKMKEKVELDPENKTVAMVVIEGDLMKHFKSYKVIIKVIPKSEGSLVKWIWEYEKLQEDGPTPSKYVDFVTDLTKNIDAHLLKEEQN
Disordered Region (DISPRO)
METEVEIKSPADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSAGDFPATRTEEQTQSSHLRGLHYQWSQHFVEKMKEKVELDPENKTVAMVVIEGDLMKHFKSYKVIIKVIPKSEGSLVKWIWEYEKLQEDGPTPSKYVDFVTDLTKNIDAHLLKE***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
METEVEIKSPADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSAGDFPATRTEEQTQSSHLRGLHYQWSQHFVEKMKEKVELDPENKTVAMVVIEGDLMKHFKSYKVIIKVIPKSEGSLVKWIWEYEKLQEDGPTPSKYVDFVTDLTKNIDAHLLKEEQN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	172	2.2.26 [Sep-21-2011]
Q9SSK9	335	MLP-like protein 28 OS=Ar	no	no	0.854	0.438	0.369	2e-25
Q941R6	171	MLP-like protein 31 OS=Ar	no	no	0.848	0.853	0.348	6e-24
Q9SSK7	316	MLP-like protein 34 OS=Ar	no	no	0.831	0.452	0.349	1e-22
Q9SSK5	158	MLP-like protein 43 OS=Ar	no	no	0.848	0.924	0.343	2e-22
Q9ZVF3	151	MLP-like protein 328 OS=A	no	no	0.819	0.933	0.323	2e-18
P85524	150	Kirola OS=Actinidia delic	N/A	no	0.837	0.96	0.315	3e-17
Q9ZVF2	151	MLP-like protein 329 OS=A	no	no	0.819	0.933	0.299	1e-15
Q93VR4	155	MLP-like protein 423 OS=A	no	no	0.843	0.935	0.3	2e-15
P19825	159	Major latex protein 15 OS	N/A	no	0.819	0.886	0.292	3e-12
Q06394	159	Major latex protein 146 O	N/A	no	0.813	0.880	0.282	3e-12

>sp|Q9SSK9|MLP28_ARATH MLP-like protein 28 OS=Arabidopsis thaliana GN=MLP28 PE=1 SV=1

 Score =  115 bits (287), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 64/173 (36%), Positives = 96/173 (55%), Gaps = 26/173 (15%)

Query: 1   METEVEIKSPADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSAGDFP 60
           +ET+VEIK+ ADKF++ F+ K H V   SPGN+ G ++HEGDW + GS+  W +   D  
Sbjct: 26  LETDVEIKASADKFHHMFAGKPHHVSKASPGNIQGCDLHEGDWGTVGSIVFWNY-VHDGE 84

Query: 61  ATRTEEQTQSSHLRGLHYQWSQHFVEKMKEKVELDPENKTVAMVVIEGDLMKHFKSYKVI 120
           A   +E+ ++                       ++P+   +   VIEGDLMK +KS+ + 
Sbjct: 85  AKVAKERIEA-----------------------VEPDKNLITFRVIEGDLMKEYKSFLLT 121

Query: 121 IKVIPK--SEGSLVKWIWEYEKLQEDGPTPSKYVDFVTDLTKNIDAHLLKEEQ 171
           I+V PK    GS+V W  EYEK+ E+   P   + F  +++K ID HLL EE+
Sbjct: 122 IQVTPKPGGPGSIVHWHLEYEKISEEVAHPETLLQFCVEVSKEIDEHLLAEEE 174

Can bind steroids (in vitro), and may also bind other types of hydrophobic ligands.
Arabidopsis thaliana (taxid: 3702)

>sp|Q941R6|MLP31_ARATH MLP-like protein 31 OS=Arabidopsis thaliana GN=MLP31 PE=1 SV=2

 Score =  110 bits (274), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 60/172 (34%), Positives = 93/172 (54%), Gaps = 26/172 (15%)

Query: 1   METEVEIKSPADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSAGDFP 60
           +ET++EIK+ A KF++ F+ + H V   +PG + G E+HEGDW   GS+  W +   D  
Sbjct: 24  LETDIEIKASAGKFHHMFAGRPHHVSKATPGKIQGCELHEGDWGKVGSIVFWNY-VHDGE 82

Query: 61  ATRTEEQTQSSHLRGLHYQWSQHFVEKMKEKVELDPENKTVAMVVIEGDLMKHFKSYKVI 120
           A   +E+ ++                       ++PE   +   VIEGDL+K +KS+ + 
Sbjct: 83  AKVAKERIEA-----------------------VEPEKNLITFRVIEGDLLKEYKSFVIT 119

Query: 121 IKVIPK--SEGSLVKWIWEYEKLQEDGPTPSKYVDFVTDLTKNIDAHLLKEE 170
           I+V PK    GS+V W  EYEK+ +    P  ++DF  +++K ID HLL EE
Sbjct: 120 IQVTPKRGGPGSVVHWHVEYEKIDDKVAHPETFLDFCVEVSKEIDEHLLNEE 171

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SSK7|MLP34_ARATH MLP-like protein 34 OS=Arabidopsis thaliana GN=MLP34 PE=2 SV=1

 Score =  105 bits (263), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 59/169 (34%), Positives = 91/169 (53%), Gaps = 26/169 (15%)

Query: 1   METEVEIKSPADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSAGDFP 60
           +ETEVEIK+ A +F++ F+ K H V   SPGN+   ++HEGDW + GS+  W +   D  
Sbjct: 13  LETEVEIKASAGQFHHMFAGKPHHVSKASPGNIQSCDLHEGDWGTVGSIVFWNY-VHDGE 71

Query: 61  ATRTEEQTQSSHLRGLHYQWSQHFVEKMKEKVELDPENKTVAMVVIEGDLMKHFKSYKVI 120
           A   +E+ ++                       ++PE   +   VIEGDLMK +KS+ + 
Sbjct: 72  AKVAKERIEA-----------------------VEPEKNLITFRVIEGDLMKEYKSFLIT 108

Query: 121 IKVIPK--SEGSLVKWIWEYEKLQEDGPTPSKYVDFVTDLTKNIDAHLL 167
           I+V PK    GS+V W  EYEK+ ++   P   + F  ++++ ID HLL
Sbjct: 109 IQVTPKHGGPGSIVHWHLEYEKISDEVAHPETLLQFCVEVSQEIDEHLL 157

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SSK5|MLP43_ARATH MLP-like protein 43 OS=Arabidopsis thaliana GN=MLP43 PE=2 SV=1

 Score =  104 bits (260), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 59/172 (34%), Positives = 88/172 (51%), Gaps = 26/172 (15%)

Query: 1   METEVEIKSPADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSAGDFP 60
           +ETEVEIK+ A KF++ F+ + H V   +P  +HG E+HEGDW   GS+  W +   D  
Sbjct: 11  LETEVEIKASAKKFHHMFTERPHHVSKATPDKIHGCELHEGDWGKVGSIVIWKY-VHDGK 69

Query: 61  ATRTEEQTQSSHLRGLHYQWSQHFVEKMKEKVELDPENKTVAMVVIEGDLMKHFKSYKVI 120
            T  + + ++                       +DPE   +   V+EGDLM  +KS+   
Sbjct: 70  LTVGKNKIEA-----------------------VDPEKNLITFKVLEGDLMNEYKSFAFT 106

Query: 121 IKVIPKS--EGSLVKWIWEYEKLQEDGPTPSKYVDFVTDLTKNIDAHLLKEE 170
           ++V PK    GS+  W  EYEK+ E+   P   + F  +++K ID HLL EE
Sbjct: 107 LQVTPKQGESGSIAHWHLEYEKISEEVAHPETLLQFCVEISKEIDEHLLAEE 158

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZVF3|ML328_ARATH MLP-like protein 328 OS=Arabidopsis thaliana GN=MLP328 PE=1 SV=1

 Score = 91.7 bits (226), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 54/167 (32%), Positives = 83/167 (49%), Gaps = 26/167 (15%)

Query: 3   TEVEIKSPADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSAGDFPAT 62
           TEV +K  A+K Y  + S+ H  P+    ++ GV +H+G+W+SHG++K W ++    P  
Sbjct: 9   TEVPLKGSAEKHYKRWRSENHLFPDAIGHHIQGVTIHDGEWDSHGAIKIWNYTCDGKP-- 66

Query: 63  RTEEQTQSSHLRGLHYQWSQHFVEKMKEKVELDPENKTVAMVVIEGDLMKHFKSYKVIIK 122
                                  E  KE+ E+D EN  V    +EG +M+  K Y VI +
Sbjct: 67  -----------------------EVFKERREIDDENMAVTFRGLEGHVMEQLKVYDVIFQ 103

Query: 123 VIPKSEGSLV-KWIWEYEKLQEDGPTPSKYVDFVTDLTKNIDAHLLK 168
            I KS   ++ K    +EK  +D P PS Y+ FV  L  ++D H+LK
Sbjct: 104 FIQKSPDDIICKITMIWEKQNDDMPEPSNYMKFVKSLAADMDDHVLK 150

Arabidopsis thaliana (taxid: 3702)

>sp|P85524|KIRO_ACTDE Kirola OS=Actinidia deliciosa PE=1 SV=1

 Score = 87.8 bits (216), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 53/168 (31%), Positives = 91/168 (54%), Gaps = 24/168 (14%)

Query: 1   METEVEIKSPADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSAGDFP 60
           M  +VEI S    FY  F  + + +  MSP N+ GV++ EG+W + GSV  + ++     
Sbjct: 7   MVKQVEILSDGIVFYEIFRYRLYLISEMSPVNIQGVDLLEGNWGTVGSVIFFKYTIDG-- 64

Query: 61  ATRTEEQTQSSHLRGLHYQWSQHFVEKMKEKVELDPENKTVAMVVIEGDLMKHFKSYKVI 120
               +E+T            ++  VE       +D E K+V   ++EGDLM+ +K++ +I
Sbjct: 65  ----KEKT------------AKDIVEA------IDEETKSVTFKIVEGDLMELYKTFIII 102

Query: 121 IKVIPKSEGSLVKWIWEYEKLQEDGPTPSKYVDFVTDLTKNIDAHLLK 168
           ++V  K E + V W + YEKL+ED   P+  ++F  ++TK+I+ + LK
Sbjct: 103 VQVDTKGEHNSVTWTFHYEKLKEDVEEPNTLMNFCIEITKDIETYHLK 150

Actinidia deliciosa (taxid: 3627)

>sp|Q9ZVF2|ML329_ARATH MLP-like protein 329 OS=Arabidopsis thaliana GN=MLP329 PE=2 SV=1

 Score = 82.4 bits (202), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 50/167 (29%), Positives = 80/167 (47%), Gaps = 26/167 (15%)

Query: 3   TEVEIKSPADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSAGDFPAT 62
           TEV +K  ADK Y  +  + H  P+    ++ GV VH+G+W+SH ++K W ++    P  
Sbjct: 9   TEVPLKGSADKHYKRWRDENHLFPDAIGHHIQGVTVHDGEWDSHEAIKIWNYTCDGKP-- 66

Query: 63  RTEEQTQSSHLRGLHYQWSQHFVEKMKEKVELDPENKTVAMVVIEGDLMKHFKSYKVIIK 122
                                  E  KE+ E+D EN  +    +EG +M+  K Y +I +
Sbjct: 67  -----------------------EVFKERKEIDDENMVITFRGLEGHVMEQLKVYDLIYQ 103

Query: 123 VIPKSEGSLV-KWIWEYEKLQEDGPTPSKYVDFVTDLTKNIDAHLLK 168
              KS   +V K    +EK  +D P PS Y+ F+  +  ++D H+LK
Sbjct: 104 FSQKSPDDIVCKITMIWEKRTDDSPEPSNYMKFLKSVVADMDEHVLK 150

Arabidopsis thaliana (taxid: 3702)

>sp|Q93VR4|ML423_ARATH MLP-like protein 423 OS=Arabidopsis thaliana GN=MLP423 PE=1 SV=1

 Score = 81.6 bits (200), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 51/170 (30%), Positives = 84/170 (49%), Gaps = 25/170 (14%)

Query: 1   METEVEIKSPADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSAGDFP 60
           +  EVE+KSPA+KF+       +  P   P +   ++V  GD  + GS++  T+  G   
Sbjct: 7   LHVEVEVKSPAEKFWVALGDGINLFPKAFPNDYKTIQVLAGDGNAPGSIRLITYGEG--- 63

Query: 61  ATRTEEQTQSSHLRGLHYQWSQHFVEKMKEKVE-LDPENKTVAMVVIEGDLMKHFKSYKV 119
                                   V+   E++E +D ENK+++  +I G++++++K++K 
Sbjct: 64  ---------------------SPLVKISAERIEAVDLENKSMSYSIIGGEMLEYYKTFKG 102

Query: 120 IIKVIPKSEGSLVKWIWEYEKLQEDGPTPSKYVDFVTDLTKNIDAHLLKE 169
            I VIPK  GSL+KW  E+EK   +   P    DF     K ID +LLK+
Sbjct: 103 TITVIPKDGGSLLKWSGEFEKTAHEIDDPHVIKDFAVKNFKEIDEYLLKQ 152

Arabidopsis thaliana (taxid: 3702)

>sp|P19825|MLP15_PAPSO Major latex protein 15 OS=Papaver somniferum GN=MLP15 PE=2 SV=2

 Score = 71.6 bits (174), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 50/171 (29%), Positives = 77/171 (45%), Gaps = 30/171 (17%)

Query: 3   TEVEIKSPADKFYNTFSSKAH-TVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSAGDFPA 61
           TE E+   ADK+Y  F  K H  +P+  P     V+  EG   + G VK W +     P 
Sbjct: 16  TESEVNCNADKYYQIF--KHHEDLPSAIPHIYTSVKAVEGHGTTSGCVKEWCYILEGKPL 73

Query: 62  TRTEEQTQSSHLRGLHYQWSQHFVEKMKEKVELDPENKTVAMVVIEGDLMKHFKSYKVII 121
           T                         +KEK   + E +T+    IEG +M  +K +   +
Sbjct: 74  T-------------------------VKEKTTYNDETRTINHNGIEGGMMNDYKKFVATL 108

Query: 122 KVIPKS--EGSLVKWIWEYEKLQEDGPTPSKYVDFVTDLTKNIDAHLLKEE 170
            V PK+  +GS+V WI +YEK+ ED P P  Y+ F     +++++HL   +
Sbjct: 109 VVKPKANGQGSIVTWIVDYEKINEDSPVPFDYLAFFQQNIEDLNSHLCASD 159

Not known; MLPs constitute up to 50% of the soluble latex protein.

Papaver somniferum (taxid: 3469)

>sp|Q06394|ML146_PAPSO Major latex protein 146 OS=Papaver somniferum GN=MLP146 PE=2 SV=1

 Score = 71.2 bits (173), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 48/170 (28%), Positives = 76/170 (44%), Gaps = 30/170 (17%)

Query: 4   EVEIKSPADKFYNTFSSKAH-TVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSAGDFPAT 62
           E E+   ADK+Y  +  K H  +P++ P     V+  EG   + G VK W +     P +
Sbjct: 17  ESEVNCNADKYYKLY--KHHEDLPSVIPHIYTSVKAVEGHGTTSGCVKEWGYILEGKPLS 74

Query: 63  RTEEQTQSSHLRGLHYQWSQHFVEKMKEKVELDPENKTVAMVVIEGDLMKHFKSYKVIIK 122
                                     KEK   + E +T+  +V+ GDLM  +K +   + 
Sbjct: 75  -------------------------CKEKTTYNDETRTIHHMVVAGDLMNDYKKFDATLV 109

Query: 123 VIPKSE--GSLVKWIWEYEKLQEDGPTPSKYVDFVTDLTKNIDAHLLKEE 170
           V PKS   G +VKW  +YEK+ ED P P  Y+     +T+++ +HL   +
Sbjct: 110 VNPKSNGHGCIVKWTIDYEKMNEDSPVPFGYLACYQQITEDLSSHLCASD 159

Not known; MLPs constitute up to 50% of the soluble latex protein.

Papaver somniferum (taxid: 3469)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	172
225424270	151	PREDICTED: MLP-like protein 28 [Vitis vi	0.825	0.940	0.434	1e-32
225424268	157	PREDICTED: MLP-like protein 28-like isof	0.831	0.910	0.414	1e-31
147789188	151	hypothetical protein VITISV_033953 [Viti	0.831	0.947	0.414	1e-31
225424266	151	PREDICTED: MLP-like protein 28 [Vitis vi	0.825	0.940	0.416	2e-31
359472859	151	PREDICTED: MLP-like protein 28-like isof	0.831	0.947	0.414	2e-31
225424264	151	PREDICTED: ripening-related protein-like	0.825	0.940	0.410	4e-31
224101857	150	predicted protein [Populus trichocarpa]	0.831	0.953	0.398	6e-31
7406710	151	putative ripening-related protein [Vitis	0.825	0.940	0.404	1e-30
118489635	150	unknown [Populus trichocarpa x Populus d	0.831	0.953	0.398	2e-30
359472616	161	PREDICTED: LOW QUALITY PROTEIN: MLP-like	0.825	0.881	0.398	2e-30

>gi|225424270|ref|XP_002284516.1| PREDICTED: MLP-like protein 28 [Vitis vinifera]

 Score =  144 bits (363), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 73/168 (43%), Positives = 105/168 (62%), Gaps = 26/168 (15%)

Query: 1   METEVEIKSPADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSAGDFP 60
           +ETE EIK+PADKF+  F S+AH +PN+    +H +EVHEGDWE+ GSVK W+++ G   
Sbjct: 7   VETETEIKAPADKFFKLFRSQAHHLPNICSDKIHKIEVHEGDWETQGSVKHWSYTIGG-- 64

Query: 61  ATRTEEQTQSSHLRGLHYQWSQHFVEKMKEKVE-LDPENKTVAMVVIEGDLMKHFKSYKV 119
                  +QS                 +KE VE +D EN+++   V++G+++K +KSYK 
Sbjct: 65  ------NSQS-----------------IKETVESIDEENRSITFKVLDGEVLKEYKSYKF 101

Query: 120 IIKVIPKSEGSLVKWIWEYEKLQEDGPTPSKYVDFVTDLTKNIDAHLL 167
             + IPK EGSLV W  EYEK  E GP P  Y++F  ++TK+I++HLL
Sbjct: 102 TAQAIPKGEGSLVIWTIEYEKASEGGPDPHNYLEFAVNITKDIESHLL 149

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225424268|ref|XP_002284538.1| PREDICTED: MLP-like protein 28-like isoform 1 [Vitis vinifera]

 Score =  140 bits (354), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 70/169 (41%), Positives = 103/169 (60%), Gaps = 26/169 (15%)

Query: 1   METEVEIKSPADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSAGDFP 60
           +E E+EI SPADKFYN F  +AH +PN+    +H ++VHEGDWE+ GSVK+W ++ G   
Sbjct: 13  LEVEMEINSPADKFYNIFRRQAHHIPNICSDKVHQIDVHEGDWETPGSVKNWGYTLGGTS 72

Query: 61  ATRTEEQTQSSHLRGLHYQWSQHFVEKMKEKVE-LDPENKTVAMVVIEGDLMKHFKSYKV 119
            +                         +KE VE +D ENK++   V++G++M HFK +K 
Sbjct: 73  MS-------------------------LKETVESVDDENKSITFKVVDGEIMNHFKCFKS 107

Query: 120 IIKVIPKSEGSLVKWIWEYEKLQEDGPTPSKYVDFVTDLTKNIDAHLLK 168
            ++V  K EGSLVKW  EYEK+ +D P P  Y++F  ++TK+I++H LK
Sbjct: 108 NLQVKAKDEGSLVKWSLEYEKVNKDVPNPDAYLEFAVNVTKDIESHYLK 156

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147789188|emb|CAN75774.1| hypothetical protein VITISV_033953 [Vitis vinifera]

 Score =  140 bits (354), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 70/169 (41%), Positives = 103/169 (60%), Gaps = 26/169 (15%)

Query: 1   METEVEIKSPADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSAGDFP 60
           +E E+EI SPADKFYN F  +AH +PN+    +H ++VHEGDWE+ GSVK+W ++ G   
Sbjct: 7   LEVEMEINSPADKFYNIFRRQAHHIPNICSDKVHQIDVHEGDWETPGSVKNWGYTLGGTS 66

Query: 61  ATRTEEQTQSSHLRGLHYQWSQHFVEKMKEKVE-LDPENKTVAMVVIEGDLMKHFKSYKV 119
            +                         +KE VE +D ENK++   V++G++M HFK +K 
Sbjct: 67  MS-------------------------LKETVESVDDENKSITFKVVDGEIMNHFKCFKS 101

Query: 120 IIKVIPKSEGSLVKWIWEYEKLQEDGPTPSKYVDFVTDLTKNIDAHLLK 168
            ++V  K EGSLVKW  EYEK+ +D P P  Y++F  ++TK+I++H LK
Sbjct: 102 NLQVKAKDEGSLVKWXLEYEKVNKDVPNPDAYLEFAVNVTKDIESHYLK 150

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225424266|ref|XP_002284527.1| PREDICTED: MLP-like protein 28 [Vitis vinifera] gi|147789187|emb|CAN75773.1| hypothetical protein VITISV_033952 [Vitis vinifera] gi|297737684|emb|CBI26885.3| unnamed protein product [Vitis vinifera]

 Score =  140 bits (353), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 70/168 (41%), Positives = 100/168 (59%), Gaps = 26/168 (15%)

Query: 1   METEVEIKSPADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSAGDFP 60
           +E E EIK+PADKF+  F S+AH +PN+    +H +EVHEGDWE+ GSVK W+++ G   
Sbjct: 7   LEIETEIKAPADKFFKIFRSQAHHLPNICSDKIHKIEVHEGDWETQGSVKHWSYTIGGNS 66

Query: 61  ATRTEEQTQSSHLRGLHYQWSQHFVEKMKEKVE-LDPENKTVAMVVIEGDLMKHFKSYKV 119
            +                         +KE VE +D EN+++   V +G+++  +KSYK 
Sbjct: 67  KS-------------------------IKESVESIDEENRSITFKVSDGEVLNDYKSYKF 101

Query: 120 IIKVIPKSEGSLVKWIWEYEKLQEDGPTPSKYVDFVTDLTKNIDAHLL 167
             + IPK EG LVKW  EYEK  EDGP P  Y++F   +TK+I++HLL
Sbjct: 102 TTQAIPKGEGCLVKWTIEYEKASEDGPDPHDYLEFAVTVTKDIESHLL 149

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359472859|ref|XP_003631205.1| PREDICTED: MLP-like protein 28-like isoform 2 [Vitis vinifera] gi|297737683|emb|CBI26884.3| unnamed protein product [Vitis vinifera]

 Score =  140 bits (353), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 70/169 (41%), Positives = 103/169 (60%), Gaps = 26/169 (15%)

Query: 1   METEVEIKSPADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSAGDFP 60
           +E E+EI SPADKFYN F  +AH +PN+    +H ++VHEGDWE+ GSVK+W ++ G   
Sbjct: 7   LEVEMEINSPADKFYNIFRRQAHHIPNICSDKVHQIDVHEGDWETPGSVKNWGYTLGGTS 66

Query: 61  ATRTEEQTQSSHLRGLHYQWSQHFVEKMKEKVE-LDPENKTVAMVVIEGDLMKHFKSYKV 119
            +                         +KE VE +D ENK++   V++G++M HFK +K 
Sbjct: 67  MS-------------------------LKETVESVDDENKSITFKVVDGEIMNHFKCFKS 101

Query: 120 IIKVIPKSEGSLVKWIWEYEKLQEDGPTPSKYVDFVTDLTKNIDAHLLK 168
            ++V  K EGSLVKW  EYEK+ +D P P  Y++F  ++TK+I++H LK
Sbjct: 102 NLQVKAKDEGSLVKWSLEYEKVNKDVPNPDAYLEFAVNVTKDIESHYLK 150

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225424264|ref|XP_002284513.1| PREDICTED: ripening-related protein-like [Vitis vinifera] gi|147865627|emb|CAN83049.1| hypothetical protein VITISV_030287 [Vitis vinifera] gi|297737685|emb|CBI26886.3| unnamed protein product [Vitis vinifera]

 Score =  139 bits (350), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 69/168 (41%), Positives = 101/168 (60%), Gaps = 26/168 (15%)

Query: 1   METEVEIKSPADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSAGDFP 60
           +ETE EIK+PADKF+  F S+AH +PN+    +H +EVHEGDWE+ GSVK W+ + G+  
Sbjct: 7   LETETEIKAPADKFFKIFRSQAHHLPNICSDKIHKIEVHEGDWETQGSVKHWSLTVGENS 66

Query: 61  ATRTEEQTQSSHLRGLHYQWSQHFVEKMKEKV-ELDPENKTVAMVVIEGDLMKHFKSYKV 119
                                    E +KE V ++D EN+++   V++G+++K +KSYK 
Sbjct: 67  -------------------------ESIKETVDQIDEENRSITFKVLDGEVLKDYKSYKF 101

Query: 120 IIKVIPKSEGSLVKWIWEYEKLQEDGPTPSKYVDFVTDLTKNIDAHLL 167
             + IPK EG LV W  EYEK  E GP P   ++F  ++TK+I++HLL
Sbjct: 102 TTQAIPKGEGCLVIWTIEYEKASEGGPDPHNCLEFSVNITKDIESHLL 149

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224101857|ref|XP_002312447.1| predicted protein [Populus trichocarpa] gi|222852267|gb|EEE89814.1| predicted protein [Populus trichocarpa]

 Score =  138 bits (348), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 67/168 (39%), Positives = 101/168 (60%), Gaps = 25/168 (14%)

Query: 1   METEVEIKSPADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSAGDFP 60
           +E   E+K  ADKF+   S +AH +PN S G +H +EVHEGDW + GSVK WT++    P
Sbjct: 7   LEINFELKCSADKFFEILSCQAHQIPNASSGEIHAIEVHEGDWVATGSVKLWTYTIDGKP 66

Query: 61  ATRTEEQTQSSHLRGLHYQWSQHFVEKMKEKVELDPENKTVAMVVIEGDLMKHFKSYKVI 120
                                    E  KEKVE+D  NK+V+++ + G +++ +KSYK+ 
Sbjct: 67  -------------------------EVFKEKVEVDEVNKSVSLIAVGGHVLEQYKSYKIT 101

Query: 121 IKVIPKSEGSLVKWIWEYEKLQEDGPTPSKYVDFVTDLTKNIDAHLLK 168
           +K +  +EG +VK + +YEKL+ D P P+KY+DFV ++ K+ID HL+K
Sbjct: 102 LKTVSMAEGGVVKILLDYEKLKPDDPPPNKYLDFVINVVKDIDEHLVK 149

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|7406710|emb|CAB85634.1| putative ripening-related protein [Vitis vinifera]

 Score =  137 bits (346), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 68/168 (40%), Positives = 101/168 (60%), Gaps = 26/168 (15%)

Query: 1   METEVEIKSPADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSAGDFP 60
           +ETE EIK+PADKF+  F S+AH +PN+    +H +EVHEGDWE+ GSVK W+ + G+  
Sbjct: 7   LETETEIKAPADKFFKIFRSQAHHLPNICSDKIHKIEVHEGDWETQGSVKHWSLTVGENS 66

Query: 61  ATRTEEQTQSSHLRGLHYQWSQHFVEKMKEKV-ELDPENKTVAMVVIEGDLMKHFKSYKV 119
                                    E +KE V ++D EN+++   V++G+++K +KSYK 
Sbjct: 67  -------------------------ESIKETVDQIDEENRSITFKVLDGEVLKDYKSYKF 101

Query: 120 IIKVIPKSEGSLVKWIWEYEKLQEDGPTPSKYVDFVTDLTKNIDAHLL 167
             + IPK EG LV W  EYEK  E GP P   ++F  ++TK+I++HL+
Sbjct: 102 TTQAIPKGEGCLVIWTIEYEKASEGGPDPHNCLEFSVNITKDIESHLV 149

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118489635|gb|ABK96619.1| unknown [Populus trichocarpa x Populus deltoides]

 Score =  137 bits (345), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 67/168 (39%), Positives = 100/168 (59%), Gaps = 25/168 (14%)

Query: 1   METEVEIKSPADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSAGDFP 60
           +E   E+K  ADKF+   S +AH +PN S G +H +EVHEGDW + GSVK WT++    P
Sbjct: 7   LEINFELKCSADKFFEVLSRQAHQIPNASSGEIHAIEVHEGDWVATGSVKLWTYTIDGKP 66

Query: 61  ATRTEEQTQSSHLRGLHYQWSQHFVEKMKEKVELDPENKTVAMVVIEGDLMKHFKSYKVI 120
                                    E  KEKVE+D  NK+V+++ + G +++ +KSYK+ 
Sbjct: 67  -------------------------EVFKEKVEVDEVNKSVSLIAVGGHVLEQYKSYKIT 101

Query: 121 IKVIPKSEGSLVKWIWEYEKLQEDGPTPSKYVDFVTDLTKNIDAHLLK 168
           +K +  +EG +VK + +YEKL+ D P P+KY+DFV  + K+ID HL+K
Sbjct: 102 LKTVSMAEGGVVKILLDYEKLKPDDPPPNKYLDFVIKVVKDIDEHLVK 149

Source: Populus trichocarpa x Populus deltoides

Species: Populus trichocarpa x Populus deltoides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359472616|ref|XP_003631176.1| PREDICTED: LOW QUALITY PROTEIN: MLP-like protein 28-like [Vitis vinifera]

 Score =  136 bits (343), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 67/168 (39%), Positives = 99/168 (58%), Gaps = 26/168 (15%)

Query: 1   METEVEIKSPADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSAGDFP 60
           +ETE EIK+P D+F+    S+AH +PN+     H VEVHEGDWE+ GSVK W+++ G   
Sbjct: 17  LETETEIKAPVDEFFKIVRSQAHQLPNICSDKXHKVEVHEGDWETQGSVKHWSYTIGGNS 76

Query: 61  ATRTEEQTQSSHLRGLHYQWSQHFVEKMKEKVE-LDPENKTVAMVVIEGDLMKHFKSYKV 119
            +                         +KE +E +D EN+++   V++G+++K +KSYK 
Sbjct: 77  VS-------------------------IKETMESMDEENRSITFXVLDGEVLKDYKSYKF 111

Query: 120 IIKVIPKSEGSLVKWIWEYEKLQEDGPTPSKYVDFVTDLTKNIDAHLL 167
             + IPK EG LVKW  EYEK  EDGP P  Y++   ++ K+I++HLL
Sbjct: 112 TTQAIPKGEGCLVKWTAEYEKASEDGPDPRDYLELTVNVIKDIESHLL 159

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	172
TAIR|locus:2013930	316	MLP34 "AT1G70850" [Arabidopsis	0.476	0.259	0.458	1.2e-29
TAIR|locus:2014000	335	MLP28 "AT1G70830" [Arabidopsis	0.482	0.247	0.430	4.3e-29
TAIR|locus:2013970	171	MLP31 "AT1G70840" [Arabidopsis	0.476	0.479	0.435	2.5e-28
TAIR|locus:2143809	166	AT5G28010 "AT5G28010" [Arabido	0.476	0.493	0.482	5.2e-28
TAIR|locus:2013950	158	MLP43 "AT1G70890" [Arabidopsis	0.476	0.518	0.411	1.4e-27
TAIR|locus:2201200	148	AT1G23120 "AT1G23120" [Arabido	0.494	0.574	0.453	4e-26
TAIR|locus:2079226	152	AT3G26460 "AT3G26460" [Arabido	0.482	0.546	0.357	2.1e-23
TAIR|locus:2013920	159	AT1G70880 "AT1G70880" [Arabido	0.476	0.515	0.388	1.8e-22
TAIR|locus:2006832	153	AT1G14960 "AT1G14960" [Arabido	0.5	0.562	0.321	1.8e-22
TAIR|locus:2015701	152	AT1G30990 "AT1G30990" [Arabido	0.383	0.434	0.373	2.5e-21

TAIR|locus:2013930 MLP34 "AT1G70850" [Arabidopsis thaliana (taxid:3702)]

 Score = 195 (73.7 bits), Expect = 1.2e-29, Sum P(2) = 1.2e-29
 Identities = 39/85 (45%), Positives = 55/85 (64%)

Query:    89 KEKVE-LDPENKTVAMVVIEGDLMKHFKSYKVIIKVIPK--SEGSLVKWIWEYEKLQEDG 145
             KE++E +DPE   +   VIEGDLMK +KS+ + I+V PK    GS+V W +EYEK+ E+ 
Sbjct:   232 KERIEAVDPEKNLITFRVIEGDLMKEYKSFVITIQVTPKHGGSGSVVHWHFEYEKINEEV 291

Query:   146 PTPSKYVDFVTDLTKNIDAHLLKEE 170
               P   + F  +++K ID HLL EE
Sbjct:   292 AHPETLLQFAVEVSKEIDEHLLAEE 316

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA

TAIR|locus:2014000 MLP28 "AT1G70830" [Arabidopsis thaliana (taxid:3702)]

 Score = 184 (69.8 bits), Expect = 4.3e-29, Sum P(2) = 4.3e-29
 Identities = 37/86 (43%), Positives = 55/86 (63%)

Query:    89 KEKVE-LDPENKTVAMVVIEGDLMKHFKSYKVIIKVIPK--SEGSLVKWIWEYEKLQEDG 145
             KE++E ++P+   +   VIEGDLMK +KS+ + I+V PK    GS+V W  EYEK+ E+ 
Sbjct:    89 KERIEAVEPDKNLITFRVIEGDLMKEYKSFLLTIQVTPKPGGPGSIVHWHLEYEKISEEV 148

Query:   146 PTPSKYVDFVTDLTKNIDAHLLKEEQ 171
               P   + F  +++K ID HLL EE+
Sbjct:   149 AHPETLLQFCVEVSKEIDEHLLAEEE 174

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2013970 MLP31 "AT1G70840" [Arabidopsis thaliana (taxid:3702)]

 Score = 187 (70.9 bits), Expect = 2.5e-28, Sum P(2) = 2.5e-28
 Identities = 37/85 (43%), Positives = 55/85 (64%)

Query:    89 KEKVE-LDPENKTVAMVVIEGDLMKHFKSYKVIIKVIPK--SEGSLVKWIWEYEKLQEDG 145
             KE++E ++PE   +   VIEGDL+K +KS+ + I+V PK    GS+V W  EYEK+ +  
Sbjct:    87 KERIEAVEPEKNLITFRVIEGDLLKEYKSFVITIQVTPKRGGPGSVVHWHVEYEKIDDKV 146

Query:   146 PTPSKYVDFVTDLTKNIDAHLLKEE 170
               P  ++DF  +++K ID HLL EE
Sbjct:   147 AHPETFLDFCVEVSKEIDEHLLNEE 171

GO:0003674 "molecular_function" evidence=ND

GO:0006952 "defense response" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2143809 AT5G28010 "AT5G28010" [Arabidopsis thaliana (taxid:3702)]

 Score = 202 (76.2 bits), Expect = 5.2e-28, Sum P(2) = 5.2e-28
 Identities = 41/85 (48%), Positives = 56/85 (65%)

Query:    89 KEKVEL-DPENKTVAMVVIEGDLMKHFKSYKVIIKVIPKS--EGSLVKWIWEYEKLQEDG 145
             KE++EL +PE K +   VIEGD+M  +KS+ + I+V PK    GS+VKW  EYEK+ E+ 
Sbjct:    82 KERIELVEPEKKLIKFRVIEGDVMAEYKSFLITIQVTPKEGGTGSVVKWHIEYEKIDENV 141

Query:   146 PTPSKYVDFVTDLTKNIDAHLLKEE 170
             P P   + F  ++TK ID HLL EE
Sbjct:   142 PHPENLLPFFAEMTKEIDEHLLSEE 166

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA

TAIR|locus:2013950 MLP43 "AT1G70890" [Arabidopsis thaliana (taxid:3702)]

 Score = 176 (67.0 bits), Expect = 1.4e-27, Sum P(2) = 1.4e-27
 Identities = 35/85 (41%), Positives = 50/85 (58%)

Query:    89 KEKVE-LDPENKTVAMVVIEGDLMKHFKSYKVIIKVIPKS--EGSLVKWIWEYEKLQEDG 145
             K K+E +DPE   +   V+EGDLM  +KS+   ++V PK    GS+  W  EYEK+ E+ 
Sbjct:    74 KNKIEAVDPEKNLITFKVLEGDLMNEYKSFAFTLQVTPKQGESGSIAHWHLEYEKISEEV 133

Query:   146 PTPSKYVDFVTDLTKNIDAHLLKEE 170
               P   + F  +++K ID HLL EE
Sbjct:   134 AHPETLLQFCVEISKEIDEHLLAEE 158

GO:0003674 "molecular_function" evidence=ND

GO:0006952 "defense response" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0030003 "cellular cation homeostasis" evidence=RCA

GO:0070838 "divalent metal ion transport" evidence=RCA

TAIR|locus:2201200 AT1G23120 "AT1G23120" [Arabidopsis thaliana (taxid:3702)]

 Score = 237 (88.5 bits), Expect = 4.0e-26, Sum P(2) = 4.0e-26
 Identities = 39/86 (45%), Positives = 63/86 (73%)

Query:    85 VEKMKEKVELDPENKTVAMVVIEGDLMKHFKSYKVIIKVIPKSEG-SLVKWIWEYEKLQE 143
             +E++KEK+++D ENK+V+ + +EGD++K +KSYK+ + V+PK     + KW WEYEKL +
Sbjct:    62 MEQIKEKIDVDEENKSVSFLALEGDVLKQYKSYKITLDVVPKDHKVCIAKWTWEYEKLND 121

Query:   144 DGPTPSKYVDFVTDLTKNIDAHLLKE 169
             D P P++Y  FV D T++++  LL E
Sbjct:   122 DVPPPTRYTAFVEDYTRDLETRLLSE 147

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0006952 "defense response" evidence=IEA

TAIR|locus:2079226 AT3G26460 "AT3G26460" [Arabidopsis thaliana (taxid:3702)]

 Score = 147 (56.8 bits), Expect = 2.1e-23, Sum P(2) = 2.1e-23
 Identities = 30/84 (35%), Positives = 51/84 (60%)

Query:    86 EKMKEKVELDPENKTVAMVVIEGDLMKHFKSYKVIIKVIPKSEGSLV-KWIWEYEKLQED 144
             E+ KE+ E+D EN T+ +V +EG +M+  K Y++  + IPKSE   + K    +EK  +D
Sbjct:    68 EEFKERREMDDENNTMKVVGLEGHVMEQLKVYEIDFQFIPKSEEDCICKITMIWEKRNDD 127

Query:   145 GPTPSKYVDFVTDLTKNIDAHLLK 168
              P PS Y+  +  +  +++ H+LK
Sbjct:   128 FPEPSSYMQLLKSMVIDMEDHVLK 151

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA

TAIR|locus:2013920 AT1G70880 "AT1G70880" [Arabidopsis thaliana (taxid:3702)]

 Score = 170 (64.9 bits), Expect = 1.8e-22, Sum P(2) = 1.8e-22
 Identities = 33/85 (38%), Positives = 52/85 (61%)

Query:    89 KEKVE-LDPENKTVAMVVIEGDLMKHFKSYKVIIKVIPKS--EGSLVKWIWEYEKLQEDG 145
             K+++E LDPE   +   V+EGDL+K + S+    +V PK    GS+  W +EYEK+ E+ 
Sbjct:    75 KQRIESLDPEKNRITYRVVEGDLLKEYTSFVTTFQVTPKEGEPGSVAHWHFEYEKINEEV 134

Query:   146 PTPSKYVDFVTDLTKNIDAHLLKEE 170
               P   +   T+++K++D HLL EE
Sbjct:   135 AHPETLLQLATEVSKDMDEHLLSEE 159

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA

TAIR|locus:2006832 AT1G14960 "AT1G14960" [Arabidopsis thaliana (taxid:3702)]

 Score = 142 (55.0 bits), Expect = 1.8e-22, Sum P(2) = 1.8e-22
 Identities = 28/87 (32%), Positives = 52/87 (59%)

Query:    86 EKMKEKVELDPENKTVAMVVIEGDLMKHFKSYKVIIKVIPKS-EGSLVKWIWEYEKLQED 144
             E +KE++E+D EN  V +  ++G +M+  K Y   +  IP+S +G + K    +EK  ED
Sbjct:    67 EVLKERIEMDDENMAVTINGLDGHVMEVLKVYVTTLHFIPESKDGCVCKITMVWEKRTED 126

Query:   145 GPTPSKYVDFVTDLTKNIDAHLLKEEQ 171
              P P +++ FV  +  ++D H+L+ ++
Sbjct:   127 SPEPIEFMKFVEQMIAHMDDHILQNQE 153

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA

GO:0016126 "sterol biosynthetic process" evidence=RCA

TAIR|locus:2015701 AT1G30990 "AT1G30990" [Arabidopsis thaliana (taxid:3702)]

 Score = 140 (54.3 bits), Expect = 2.5e-21, Sum P(2) = 2.5e-21
 Identities = 25/67 (37%), Positives = 42/67 (62%)

Query:     3 TEVEIKSPADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSAGDFPAT 62
             T+V +   A+K Y  +SS+ H +P+     + GV +HEGDW+SHGS+K+W ++  D    
Sbjct:     9 TDVPLNGSAEKHYKLWSSETHRIPDTIGHLIQGVILHEGDWDSHGSIKTWKYNL-DGKEE 67

Query:    63 RTEEQTQ 69
               +E+T+
Sbjct:    68 EFKERTE 74

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00030522001 SubName- Full=Chromosome chr1 scaffold_5, whole genome shotgun sequence; (151 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	172
pfam00407	150	pfam00407, Bet_v_1, Pathogenesis-related protein B	8e-51
smart01037	151	smart01037, Bet_v_1, Pathogenesis-related protein	3e-48
cd07816	148	cd07816, Bet_v1-like, Ligand-binding bet_v_1 domai	8e-34

>gnl|CDD|215904 pfam00407, Bet_v_1, Pathogenesis-related protein Bet v I family

 Score =  159 bits (405), Expect = 8e-51
 Identities = 72/170 (42%), Positives = 101/170 (59%), Gaps = 27/170 (15%)

Query: 2   ETEVEIKSPADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSAGDFPA 61
           ETEVEIK  ADKFY  F  + H +P   P ++ GVEVHEG+W + GS+K WT++    P 
Sbjct: 6   ETEVEIKVSADKFYKAFKLEDHLIPKAIPHHIQGVEVHEGEWGTGGSIKKWTYTEDGKP- 64

Query: 62  TRTEEQTQSSHLRGLHYQWSQHFVEKMKEKVEL-DPENKTVAMVVIEGDLMKHFKSYKVI 120
                                   + +KE++E  D +NKT+   V+EGD+++ +KS+   
Sbjct: 65  ------------------------KVVKERIEADDEKNKTITYSVLEGDVLEDYKSFITT 100

Query: 121 IKVIPKSEG-SLVKWIWEYEKLQEDGPTPSKYVDFVTDLTKNIDAHLLKE 169
           ++VIPKS G S+VKW  EYEK+ +D P P KY+ FV  LTK+I+AHLL  
Sbjct: 101 LQVIPKSNGGSIVKWTIEYEKIGDDVPEPEKYLKFVVKLTKDIEAHLLAN 150

This family is named after Bet v 1, the major birch pollen allergen. This protein belongs to family 10 of plant pathogenesis-related proteins (PR-10), cytoplasmic proteins of 15-17 kd that are wide-spread among dicotyledonous plants. In recent years, a number of diverse plant proteins with low sequence similarity to Bet v 1 was identified. A classification by sequence similarity yielded several subfamilies related to PR-10: - Pathogenesis-related proteins PR-10: These proteins were identified as major tree pollen allergens in birch and related species (hazel, alder), as plant food allergens expressed in high levels in fruits, vegetables and seeds (apple, celery, hazelnut), and as pathogenesis-related proteins whose expression is induced by pathogen infection, wounding, or abiotic stress. Hyp-1, an enzyme involved in the synthesis of the bioactive naphthodianthrone hypericin in St. John's wort (Hypericum perforatum) also belongs to this family. Most of these proteins were found in dicotyledonous plants. In addition, related sequences were identified in monocots and conifers. - Cytokinin-specific binding proteins: These legume proteins bind cytokinin plant hormones. - (S)-Norcoclaurine synthases are enzymes catalyzing the condensation of dopamine and 4-hydroxyphenylacetaldehyde to (S)-norcoclaurine, the first committed step in the biosynthesis of benzylisoquinoline alkaloids such as morphine. -Major latex proteins and ripening-related proteins are proteins of unknown biological function that were first discovered in the latex of opium poppy (Papaver somniferum) and later found to be upregulated during ripening of fruits such as strawberry and cucumber. The occurrence of Bet v 1-related proteins is confined to seed plants with the exception of a cytokinin-binding protein from the moss Physcomitrella patens. Length = 150

>gnl|CDD|198105 smart01037, Bet_v_1, Pathogenesis-related protein Bet v I family

 Score =  153 bits (388), Expect = 3e-48
 Identities = 76/170 (44%), Positives = 103/170 (60%), Gaps = 27/170 (15%)

Query: 2   ETEVEIKSPADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSAGDFPA 61
           ETEV IK  A+KF+  F S+ H  P  +  ++ GV++HEGDW SHGS+K W ++      
Sbjct: 7   ETEVPIKGSAEKFFKRFVSRNHHFPKATGHHIQGVDLHEGDWGSHGSIKIWNYT------ 60

Query: 62  TRTEEQTQSSHLRGLHYQWSQHFVEKMKEKVE-LDPENKTVAMVVIEGDLMKHFKSYKVI 120
                      + G          E  KE++E +D E KT+   V+EGD+M+ +KS+K  
Sbjct: 61  -----------VDG--------KEEVFKERIEAVDDEKKTITFRVLEGDVMEEYKSFKGT 101

Query: 121 IKVIPKSE-GSLVKWIWEYEKLQEDGPTPSKYVDFVTDLTKNIDAHLLKE 169
           I+V PKS  GS+VKW  EYEK+ ED P P KY+DFV +LTK+ID HLLKE
Sbjct: 102 IQVTPKSGGGSVVKWTLEYEKINEDVPEPEKYMDFVVELTKDIDEHLLKE 151

This family is named after Bet v 1, the major birch pollen allergen. This protein belongs to family 10 of plant pathogenesis-related proteins (PR-10), cytoplasmic proteins of 15-17 kd that are wide-spread among dicotyledonous plants. In recent years, a number of diverse plant proteins with low sequence similarity to Bet v 1 was identified. A classification by sequence similarity yielded several subfamilies related to PR-10.- Pathogenesis-related proteins PR-10: These proteins were identified as major tree pollen allergens in birch and related species (hazel, alder), as plant food allergens expressed in high levels in fruits, vegetables and seeds (apple, celery, hazelnut), and as pathogenesis-related proteins whose expression is induced by pathogen infection, wounding, or abiotic stress. Hyp-1, an enzyme involved in the synthesis of the bioactive naphthodianthrone hypericin in St. John's wort (Hypericum perforatum) also belongs to this family. Most of these proteins were found in dicotyledonous plants. In addition, related sequences were identified in monocots and conifers. - Cytokinin-specific binding proteins: These legume proteins bind cytokinin plant hormones. - (S)-Norcoclaurine synthases are enzymes catalysing the condensation of dopamine and 4-hydroxyphenylacetaldehyde to (S)-norcoclaurine, the first committed step in the biosynthesis of benzylisoquinoline alkaloids such as morphine. -Major latex proteins and ripening-related proteins are proteins of unknown biological function that were first discovered in the latex of opium poppy (Papaver somniferum) and later found to be upregulated during ripening of fruits such as strawberry and cucumber. The occurrence of Bet v 1-related proteins is confined to seed plants with the exception of a cytokinin-binding protein from the moss Physcomitrella patens. Length = 151

>gnl|CDD|176858 cd07816, Bet_v1-like, Ligand-binding bet_v_1 domain of major pollen allergen of white birch (Betula verrucosa), Bet v 1, and related proteins

 Score =  116 bits (292), Expect = 8e-34
 Identities = 57/170 (33%), Positives = 80/170 (47%), Gaps = 29/170 (17%)

Query: 1   METEVEIKSPADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSAGDFP 60
           +E EVE+K PA+K +  F   +H +P   P  +  VE+ EGD    GS+K  TF  G   
Sbjct: 3   LEHEVELKVPAEKLWKAFVLDSHLLPPKLPPVIKSVELLEGD-GGPGSIKLITFGPG--- 58

Query: 61  ATRTEEQTQSSHLRGLHYQWSQHFVEKMKEKVE-LDPENKTVAMVVIEGDLMKH-FKSYK 118
                                   V+ +KE+++ +D ENKT    VIEGD++K  +KSYK
Sbjct: 59  ----------------------GKVKYVKERIDAVDEENKTYKYTVIEGDVLKDGYKSYK 96

Query: 119 VIIKVIPKSE-GSLVKWIWEYEKLQEDGPTPSKYVDFVTDLTKNIDAHLL 167
           V IK +PK + G +VKW  EYEK  +  P   +         K   A   
Sbjct: 97  VEIKFVPKGDGGCVVKWTIEYEKKGDAEPPEEEIKAGKEKALKMFKAVEA 146

This family includes the ligand binding domain of Bet v 1 (the major pollen allergen of white birch, Betula verrucosa) and related proteins. In addition to birch Bet v 1, this family includes other plant intracellular pathogenesis-related class 10 (PR-10) proteins, norcoclaurine synthases (NCSs), cytokinin binding proteins (CSBPs), major latex proteins (MLPs), and ripening-related proteins. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Members of this family binds a diverse range of ligands. Bet v 1 can bind brassinosteroids, cytokinins, flavonoids and fatty acids. Hyp-1, a PR-10 from Hypericum perforatum/St. John's wort, catalyzes the condensation of two molecules of emodin to the bioactive naphthodianthrone hypericin. NCSs catalyze the condensation of dopamine and 4-hydroxyphenylacetaldehyde to (S)-norcoclaurine, the first committed step in the biosynthesis of benzylisoquinoline alkaloids such as morphine. The role of MLPs is unclear; however, they are associated with fruit and flower development and in pathogen defense responses. A number of PR-10 proteins in this subgroup, including Bet v 1, have in vitro RNase activity, the biological significance of which is unclear. Bet v 1 family proteins have a conserved glycine-rich P (phosphate-binding)-loop proximal to the entrance of the ligand-binding pocket. However, its conformation differs from that of the canonical P-loop structure found in nucleotide-binding proteins. Several PR-10 members including Bet v1 are allergenic. Cross-reactivity of Bet v 1 with homologs from plant foods results in birch-fruit syndrome. Length = 148

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	172
PF00407	151	Bet_v_1: Pathogenesis-related protein Bet v I fami	100.0
cd07816	148	Bet_v1-like Ligand-binding bet_v_1 domain of major	100.0
cd07821	140	PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1),	99.66
cd08866	144	SRPBCC_11 Ligand-binding SRPBCC domain of an uncha	99.47
PF10604	139	Polyketide_cyc2: Polyketide cyclase / dehydrase an	99.46
cd07819	140	SRPBCC_2 Ligand-binding SRPBCC domain of an unchar	99.44
cd08865	140	SRPBCC_10 Ligand-binding SRPBCC domain of an uncha	99.41
cd07813	138	COQ10p_like Coenzyme Q-binding protein COQ10p and	99.32
cd08861	142	OtcD1_ARO-CYC_like N-terminal and C-terminal aroma	99.3
cd07812	141	SRPBCC START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SR	99.24
cd07820	137	SRPBCC_3 Ligand-binding SRPBCC domain of an unchar	99.13
cd07824	146	SRPBCC_6 Ligand-binding SRPBCC domain of an unchar	99.11
cd08860	146	TcmN_ARO-CYC_like N-terminal aromatase/cyclase dom	99.11
cd07825	144	SRPBCC_7 Ligand-binding SRPBCC domain of an unchar	99.06
cd08862	138	SRPBCC_Smu440-like Ligand-binding SRPBCC domain of	99.06
PF03364	130	Polyketide_cyc: Polyketide cyclase / dehydrase and	99.04
cd07822	141	SRPBCC_4 Ligand-binding SRPBCC domain of an unchar	98.99
cd05018	144	CoxG Carbon monoxide dehydrogenase subunit G (CoxG	98.99
cd07814	139	SRPBCC_CalC_Aha1-like Putative hydrophobic ligand-	98.96
cd07818	150	SRPBCC_1 Ligand-binding SRPBCC domain of an unchar	98.93
cd07817	139	SRPBCC_8 Ligand-binding SRPBCC domain of an unchar	98.92
PRK10724	158	hypothetical protein; Provisional	98.91
cd07823	146	SRPBCC_5 Ligand-binding SRPBCC domain of an unchar	98.8
COG3427	146	Carbon monoxide dehydrogenase subunit G, CoxG [Ene	98.42
cd08893	136	SRPBCC_CalC_Aha1-like_GntR-HTH Putative hydrophobi	98.27
cd08899	157	SRPBCC_CalC_Aha1-like_6 Putative hydrophobic ligan	98.23
PF06240	140	COXG: Carbon monoxide dehydrogenase subunit G (Cox	98.21
cd08900	143	SRPBCC_CalC_Aha1-like_7 Putative hydrophobic ligan	98.17
cd08894	139	SRPBCC_CalC_Aha1-like_1 Putative hydrophobic ligan	98.11
cd08896	146	SRPBCC_CalC_Aha1-like_3 Putative hydrophobic ligan	98.1
cd08895	146	SRPBCC_CalC_Aha1-like_2 Putative hydrophobic ligan	98.09
cd08898	145	SRPBCC_CalC_Aha1-like_5 Putative hydrophobic ligan	98.08
cd08897	133	SRPBCC_CalC_Aha1-like_4 Putative hydrophobic ligan	98.0
cd07826	142	SRPBCC_CalC_Aha1-like_9 Putative hydrophobic ligan	97.99
COG2867	146	Oligoketide cyclase/lipid transport protein [Lipid	97.96
COG5637	217	Predicted integral membrane protein [Function unkn	97.88
cd08891	149	SRPBCC_CalC Ligand-binding SRPBCC domain of Microm	97.8
cd08876	195	START_1 Uncharacterized subgroup of the steroidoge	97.71
cd08892	126	SRPBCC_Aha1 Putative hydrophobic ligand-binding SR	97.43
PF08327	124	AHSA1: Activator of Hsp90 ATPase homolog 1-like pr	97.2
cd08901	136	SRPBCC_CalC_Aha1-like_8 Putative hydrophobic ligan	97.16
COG3832	149	Uncharacterized conserved protein [Function unknow	96.43
PTZ00220	132	Activator of HSP-90 ATPase; Provisional	96.15
cd08874	205	START_STARD9-like C-terminal START domain of mamma	96.12
cd08873	235	START_STARD14_15-like Lipid-binding START domain o	96.07
cd08863	141	SRPBCC_DUF1857 DUF1857, an uncharacterized ligand-	95.03
PF08982	149	DUF1857: Domain of unknown function (DUF1857); Int	94.98
cd08868	208	START_STARD1_3_like Cholesterol-binding START doma	94.57
PF10698	159	DUF2505: Protein of unknown function (DUF2505); In	93.63
cd08903	208	START_STARD5-like Lipid-binding START domain of ma	93.54
cd08913	240	START_STARD14-like Lipid-binding START domain of m	93.5
cd08869	197	START_RhoGAP C-terminal lipid-binding START domain	93.4
cd08877	215	START_2 Uncharacterized subgroup of the steroidoge	93.39
cd00177	193	START Lipid-binding START domain of mammalian STAR	92.78
cd08914	236	START_STARD15-like Lipid-binding START domain of m	92.77
cd08905	209	START_STARD1-like Cholesterol-binding START domain	92.75
cd08906	209	START_STARD3-like Cholesterol-binding START domain	90.67
cd08870	209	START_STARD2_7-like Lipid-binding START domain of	85.54
cd08911	207	START_STARD7-like Lipid-binding START domain of ma	85.05
cd08908	204	START_STARD12-like C-terminal lipid-binding START	84.11

>PF00407 Bet_v_1: Pathogenesis-related protein Bet v I family; InterPro: IPR000916 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms

Probab=100.00  E-value=2.8e-42  Score=270.37  Aligned_cols=144  Identities=48%  Similarity=0.801  Sum_probs=133.9

Q ss_pred             CceEEEEcCCHHHHHHHhhcCCcccCCcCCCCeeeEEEEecccCCCCcEEEEEeecCCCCCcccchhccccccccccccc
Q 038195            1 METEVEIKSPADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSAGDFPATRTEEQTQSSHLRGLHYQW   80 (172)
Q Consensus         1 ~~~e~~i~apa~kvw~~~~d~~~~lpk~~P~~v~sve~~eGd~g~~Gsvr~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~   80 (172)
                      ++.|+++++||+|+|+++++..+++||++|++|+||+++|||||..||||.|+|.++++                     
T Consensus         6 ~~~E~~~~~~a~k~~ka~~~~~~llpki~P~~i~sve~~eGdgg~gGSIk~~~f~~~~~---------------------   64 (151)
T PF00407_consen    6 LEVEVEVKVSADKLWKAFKSSPHLLPKILPHVIKSVEVVEGDGGPGGSIKKWTFGPGGP---------------------   64 (151)
T ss_dssp             EEEEEEESS-HHHHHHHHTTHHHHHHHHSTTTEEEEEEEESSSSTTT-EEEEEEETTSS---------------------
T ss_pred             EEEEEEecCCHHHHHHHHhcCccchhhhChhhceeEEEEccCCCCCCeEEEEEecCCCC---------------------
Confidence            46899999999999999998777999999999999999999964445999999999998                     


Q ss_pred             ccceeeeeEEEEE-ecCCCceEEEEEEeCccccceeEEEEEEEEEecCCC-cEEEEEEEEEecCCCCCChhhhhHHHHHH
Q 038195           81 SQHFVEKMKEKVE-LDPENKTVAMVVIEGDLMKHFKSYKVIIKVIPKSEG-SLVKWIWEYEKLQEDGPTPSKYVDFVTDL  158 (172)
Q Consensus        81 ~~~~~~~~kEri~-~D~~~~~i~Y~vieGdl~~~~~s~~~t~~v~p~~dG-s~v~w~~~ye~~~~~~~~p~~~~~~~~~~  158 (172)
                          .+++|||++ +|++|++|+|++||||++..|++|..++++.|+++| |+++|+++|+++++..++|+++++++..|
T Consensus        65 ----~~~~Kekve~~D~~~~~~~y~viEGd~l~~~~~~~~~~~~~~~~~g~~v~k~t~~Ye~~~~~~~~p~~~~~~~~~~  140 (151)
T PF00407_consen   65 ----FKYVKEKVEAIDEENKTITYTVIEGDVLGDYKSFKSTIQKIPKGDGGCVVKWTIEYEKKGEDVPPPEKYLDFAVGM  140 (151)
T ss_dssp             ----EEEEEEEEEEEETTTTEEEEEEEEETTGTTTEEEEEEEEEEEETTSCEEEEEEEEEEESSTSCHHHHHHHHHHHHH
T ss_pred             ----cceeEEEEEeecCCCcEEEEEEEeccccccEEEEEEEEEecCCCCCceEEEEEEEEEecCCCCCCcHHHHHHHHHH
Confidence                889999999 999999999999999988889999999999999988 99999999999999998999999999999


Q ss_pred             HHHHHHHHhhc
Q 038195          159 TKNIDAHLLKE  169 (172)
Q Consensus       159 ~k~ie~ylla~  169 (172)
                      +|+||+||++|
T Consensus       141 ~K~ieayLlan  151 (151)
T PF00407_consen  141 FKAIEAYLLAN  151 (151)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHhcC
Confidence            99999999997

A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Aln g 1, Api g 1, Bet v 1, Car b 1, Cor a 1, Dau c 1, Mal d 1 and Pru a 1. Trees within the order Fagales possess particularly potent allergens, e.g. Bet v1, the major White Birch (Betula verrucosa) pollen antigen. Bet v1 is the main cause of type I allergies observed in early spring. Type I, or immunoglobulin E-mediated (IgE-mediated) allergies affect 1 in 5 people in Europe and North America. Commonly-observed symptoms are hay fever, dermatitis, asthma and, in severe cases, anaphylactic shock. First contact with these allergens results in sensitisation; subsequent contact produces a cross-linking reaction of IgE on mast cells and concomitant release of histamine. The inevitable symptoms of an allergic reaction ensue. Recent NMR analysis [] has confirmed earlier predictions of the protein structure and site of the major T-cell epitope []. The Bet v1 protein comprises 6 anti-parallel beta-strands and 3 alpha-helices. Four of the strands dominate the global fold, and 2 of the helices form a C-terminal amphipathic helical motif. This motif is believed to be the T-cell epitope. Other proteins belonging to this family include the major pollen allergens: Aln g I from Alnus glutinosa (Alder); Api G I from Apium graveolens (Celery); Car b I from Carpinus betulus (European hornbeam); Cor a I from Corylus avellana (European hazel); Mal d I from Malus domestica (Apple). The motif is also found in: the wound-induced protein AoPR1 from Asparagus officinalis (Garden asparagus); pathogenesis-related proteins from Phaseolus vulgaris (Kidney bean) and Petroselinum crispum (Parsley) (PR1-1 and PR1-3); the disease resistance response proteins, STH-2 and STH-21, from Solanum tuberosum (Potato) and pI49, pI176 and DRRG49-C from Pisum sativum (Garden pea); the P. sativum abscisic acid-responsive proteins ABR17 and ABR18; and the stress-induced protein SAM22 from Glycine max (Soybean). ; GO: 0006952 defense response, 0009607 response to biotic stimulus; PDB: 1IFV_A 4A8V_A 4A8U_A 2K7H_A 2QIM_A 3E85_A 1H2O_A 1E09_A 1QMR_A 1FSK_D ....

>cd07816 Bet_v1-like Ligand-binding bet_v_1 domain of major pollen allergen of white birch (Betula verrucosa), Bet v 1, and related proteins

Probab=100.00  E-value=2.5e-34  Score=223.20  Aligned_cols=141  Identities=40%  Similarity=0.640  Sum_probs=129.2

Q ss_pred             CceEEEEcCCHHHHHHHhhcCCcccCC-cCCCCeeeEEEEecccCCCCcEEEEEeecCCCCCcccchhcccccccccccc
Q 038195            1 METEVEIKSPADKFYNTFSSKAHTVPN-MSPGNLHGVEVHEGDWESHGSVKSWTFSAGDFPATRTEEQTQSSHLRGLHYQ   79 (172)
Q Consensus         1 ~~~e~~i~apa~kvw~~~~d~~~~lpk-~~P~~v~sve~~eGd~g~~Gsvr~~~~~~gg~~~~~~~~~~~~~~~~~~~~~   79 (172)
                      ++.+++|+|||+++|++++++.+.+|+ |+| .|++|++++|+ |++||||.|+|..|++                    
T Consensus         3 ~~~e~~i~a~ad~vW~~~~~~~~~~~~~~~p-~v~~~~~~eG~-~~~GsvR~~~~~~~~~--------------------   60 (148)
T cd07816           3 LEHEVELKVPAEKLWKAFVLDSHLLPPKLPP-VIKSVELLEGD-GGPGSIKLITFGPGGK--------------------   60 (148)
T ss_pred             EEEEEEecCCHHHHHHHHhcChhhccccccc-cccEEEEEecC-CCCceEEEEEEcCCCc--------------------
Confidence            468999999999999999999754555 555 79999999999 7999999999998875                    


Q ss_pred             cccceeeeeEEEEE-ecCCCceEEEEEEeCcccc-ceeEEEEEEEEEecCCC-cEEEEEEEEEecCCCCCChhhhhHHHH
Q 038195           80 WSQHFVEKMKEKVE-LDPENKTVAMVVIEGDLMK-HFKSYKVIIKVIPKSEG-SLVKWIWEYEKLQEDGPTPSKYVDFVT  156 (172)
Q Consensus        80 ~~~~~~~~~kEri~-~D~~~~~i~Y~vieGdl~~-~~~s~~~t~~v~p~~dG-s~v~w~~~ye~~~~~~~~p~~~~~~~~  156 (172)
                           +++++|||+ +|+++|+++|+++||+++. .|++|+++++|.|.++| |+++|+++|++.++++++|+.+++++.
T Consensus        61 -----~~~~kE~l~~~D~~~~~~~y~vveg~~~~~~~~~y~~t~~v~~~~~~~t~v~Wt~~ye~~~~~~~~p~~~~~~~~  135 (148)
T cd07816          61 -----VKYVKERIDAVDEENKTYKYTVIEGDVLKDGYKSYKVEIKFVPKGDGGCVVKWTIEYEKKGDAEPPEEEIKAGKE  135 (148)
T ss_pred             -----ceEEEEEEEEEcccccEEEEEEEecccccCceEEEEEEEEEEECCCCCEEEEEEEEEEECCCCCCCHHHHHhHHH
Confidence                 677999999 9999999999999999876 79999999999999766 999999999999999999999999999


Q ss_pred             HHHHHHHHHHhh
Q 038195          157 DLTKNIDAHLLK  168 (172)
Q Consensus       157 ~~~k~ie~ylla  168 (172)
                      .++++++.|++.
T Consensus       136 ~~~~~~~~~~~~  147 (148)
T cd07816         136 KALKMFKAVEAY  147 (148)
T ss_pred             HHHHHHHHHHhc
Confidence            999999999875

This family includes the ligand binding domain of Bet v 1 (the major pollen allergen of white birch, Betula verrucosa) and related proteins. In addition to birch Bet v 1, this family includes other plant intracellular pathogenesis-related class 10 (PR-10) proteins, norcoclaurine synthases (NCSs), cytokinin binding proteins (CSBPs), major latex proteins (MLPs), and ripening-related proteins. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Members of this family binds a diverse range of ligands. Bet v 1 can bind brassinosteroids, cytokinins, flavonoids and fatty acids. Hyp-1, a PR-10 from Hypericum perforatum/St. John's wort, catalyzes the condensation of two molecules of emodin to the bioactive naphthodianth

>cd07821 PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins

Probab=99.66  E-value=6.5e-15  Score=108.68  Aligned_cols=132  Identities=23%  Similarity=0.397  Sum_probs=104.8

Q ss_pred             CceEEEEcCCHHHHHHHhhcCCcccCCcCCCCeeeEEEEecccCCCCcEEEEEeecCCCCCcccchhccccccccccccc
Q 038195            1 METEVEIKSPADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSAGDFPATRTEEQTQSSHLRGLHYQW   80 (172)
Q Consensus         1 ~~~e~~i~apa~kvw~~~~d~~~~lpk~~P~~v~sve~~eGd~g~~Gsvr~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~   80 (172)
                      ++.+++|+||++++|+++.|.. .+++|+|. +++++++++++ ++|+++.+.+..|..                     
T Consensus         3 i~~~~~i~a~~~~V~~~l~d~~-~~~~w~~~-~~~~~~~~~~~-~~g~~~~~~~~~g~~---------------------   58 (140)
T cd07821           3 VTVSVTIDAPADKVWALLSDFG-GLHKWHPA-VASCELEGGGP-GVGAVRTVTLKDGGT---------------------   58 (140)
T ss_pred             EEEEEEECCCHHHHHHHHhCcC-chhhhccC-cceEEeecCCC-CCCeEEEEEeCCCCE---------------------
Confidence            3678999999999999999985 78999996 88999988763 789999998865432                     


Q ss_pred             ccceeeeeEEEEE-ecCCCceEEEEEEeCccccceeEEEEEEEEEecCC-CcEEEEEEEEEecCCCCCChh---hhhHHH
Q 038195           81 SQHFVEKMKEKVE-LDPENKTVAMVVIEGDLMKHFKSYKVIIKVIPKSE-GSLVKWIWEYEKLQEDGPTPS---KYVDFV  155 (172)
Q Consensus        81 ~~~~~~~~kEri~-~D~~~~~i~Y~vieGdl~~~~~s~~~t~~v~p~~d-Gs~v~w~~~ye~~~~~~~~p~---~~~~~~  155 (172)
                             +++++. +|+.+..+.|++++|+.  .+.++..+++++|.++ ||.|+|+.+|++.+. .+.+.   .+.+..
T Consensus        59 -------~~~~i~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~t~v~~~~~~~~~~~-~~~~~~~~~~~~~~  128 (140)
T cd07821          59 -------VRERLLALDDAERRYSYRIVEGPL--PVKNYVATIRVTPEGDGGTRVTWTAEFDPPEG-LTDELARAFLTGVY  128 (140)
T ss_pred             -------EEEEehhcCccCCEEEEEecCCCC--CcccceEEEEEEECCCCccEEEEEEEEecCCC-cchHHHHHHHHHHH
Confidence                   678899 99888899999998853  3567889999999988 499999999999876 22221   123456


Q ss_pred             HHHHHHHHHHH
Q 038195          156 TDLTKNIDAHL  166 (172)
Q Consensus       156 ~~~~k~ie~yl  166 (172)
                      ...++.|.++|
T Consensus       129 ~~~l~~L~~~~  139 (140)
T cd07821         129 RAGLAALKAAL  139 (140)
T ss_pred             HHHHHHHHHhh
Confidence            66667777665

The PYR/PYL/RCAR-like family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. PYR/PYL/RCAR plant proteins are receptors involved in signal transduction. They bind abscisic acid (ABA) and mediate its signaling. ABA is a vital plant hormone, which regulates plant growth, development, and response to environmental stresses. Upon binding ABA, these plant proteins interact with a type 2C protein phosphatase (PP2C), such as ABI1 and ABI2, and inhibit their activity. When ABA is bound, a loop (designated the gate/CL2 loop) closes over the ligand binding pocket, resulting in the weakening of the inactive PYL dimer and facilitating type 2C protein phosphatase binding. In the ABA:PYL1:ABI1 complex, the gate

>cd08866 SRPBCC_11 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

Probab=99.47  E-value=3e-12  Score=96.31  Aligned_cols=113  Identities=15%  Similarity=0.279  Sum_probs=81.9

Q ss_pred             CceEEEEcCCHHHHHHHhhcCCcccCCcCCCCeeeEEEEecccCCCCcEEEEEeecCCCCCcccchhccccccccccccc
Q 038195            1 METEVEIKSPADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSAGDFPATRTEEQTQSSHLRGLHYQW   80 (172)
Q Consensus         1 ~~~e~~i~apa~kvw~~~~d~~~~lpk~~P~~v~sve~~eGd~g~~Gsvr~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~   80 (172)
                      ++.++.|+||++++|+++.|+. ..|+|+|. +++++++++++  .+....+....+..                 +  +
T Consensus         1 ~~~~~~i~a~~~~Vw~~l~D~~-~~~~w~p~-v~~~~~l~~~~--~~~~~~~~~~~~~~-----------------~--~   57 (144)
T cd08866           1 VVARVRVPAPPETVWAVLTDYD-NLAEFIPN-LAESRLLERNG--NRVVLEQTGKQGIL-----------------F--F   57 (144)
T ss_pred             CeEEEEECCCHHHHHHHHhChh-hHHhhCcC-ceEEEEEEcCC--CEEEEEEeeeEEEE-----------------e--e
Confidence            4688999999999999999996 78999996 99999998752  22211111000000                 0  0


Q ss_pred             ccceeeeeEEEEE-ecCCCceEEEEEEeCccccceeEEEEEEEEEecCC-C-cEEEEEEEEEecC
Q 038195           81 SQHFVEKMKEKVE-LDPENKTVAMVVIEGDLMKHFKSYKVIIKVIPKSE-G-SLVKWIWEYEKLQ  142 (172)
Q Consensus        81 ~~~~~~~~kEri~-~D~~~~~i~Y~vieGdl~~~~~s~~~t~~v~p~~d-G-s~v~w~~~ye~~~  142 (172)
                        .....+..++. .++.++.+.|++++|++    ..|.++++++|.++ | |.++|.+.+++..
T Consensus        58 --~~~~~v~~~~~~~~~~~~~i~~~~~~g~~----~~~~g~w~~~~~~~~~~t~v~~~~~~~~~~  116 (144)
T cd08866          58 --KFEARVVLELREREEFPRELDFEMVEGDF----KRFEGSWRLEPLADGGGTLLTYEVEVKPDF  116 (144)
T ss_pred             --eeeEEEEEEEEEecCCCceEEEEEcCCch----hceEEEEEEEECCCCCeEEEEEEEEEEeCC
Confidence              00122445566 66668999999998864    78899999999987 4 9999999999876

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>PF10604 Polyketide_cyc2: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR019587 This family contains polyketide cylcases/dehydrases which are enzymes involved in polyketide synthesis

Probab=99.46  E-value=1.4e-11  Score=90.86  Aligned_cols=103  Identities=21%  Similarity=0.445  Sum_probs=82.6

Q ss_pred             ceEEEEcCCHHHHHHHhhcCCcccCCcCCCCeeeEEEEecccCCCCcEEEEEeecCCCCCcccchhcccccccccccccc
Q 038195            2 ETEVEIKSPADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSAGDFPATRTEEQTQSSHLRGLHYQWS   81 (172)
Q Consensus         2 ~~e~~i~apa~kvw~~~~d~~~~lpk~~P~~v~sve~~eGd~g~~Gsvr~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~   81 (172)
                      +.++.|+||++++|+++.|.. .+|+|+|. +.++++.+++  ++|..+.++.  .|.                      
T Consensus         5 ~~~~~v~a~~e~V~~~l~d~~-~~~~w~~~-~~~~~~~~~~--~~~~~~~~~~--~g~----------------------   56 (139)
T PF10604_consen    5 EVSIEVPAPPEAVWDLLSDPE-NWPRWWPG-VKSVELLSGG--GPGTERTVRV--AGR----------------------   56 (139)
T ss_dssp             EEEEEESS-HHHHHHHHTTTT-GGGGTSTT-EEEEEEEEEC--STEEEEEEEE--CSC----------------------
T ss_pred             EEEEEECCCHHHHHHHHhChh-hhhhhhhc-eEEEEEcccc--ccceeEEEEe--ccc----------------------
Confidence            678999999999999999985 78999996 9999988744  3455555553  331                      


Q ss_pred             cceeeeeEEEEE-ecCCCceEEEEEEeCccccceeEEEEEEEEEecCCCcEEEEEEEEEe
Q 038195           82 QHFVEKMKEKVE-LDPENKTVAMVVIEGDLMKHFKSYKVIIKVIPKSEGSLVKWIWEYEK  140 (172)
Q Consensus        82 ~~~~~~~kEri~-~D~~~~~i~Y~vieGdl~~~~~s~~~t~~v~p~~dGs~v~w~~~ye~  140 (172)
                          ..+.+++. +|++++.+.|++.    ...+..+..++++.|.++||.++|+.+|++
T Consensus        57 ----~~~~~~i~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~gt~v~~~~~~~~  108 (139)
T PF10604_consen   57 ----GTVREEITEYDPEPRRITWRFV----PSGFTNGTGRWRFEPVGDGTRVTWTVEFEP  108 (139)
T ss_dssp             ----SEEEEEEEEEETTTTEEEEEEE----SSSSCEEEEEEEEEEETTTEEEEEEEEEEE
T ss_pred             ----cceeEEEEEecCCCcEEEEEEE----ecceeEEEEEEEEEEcCCCEEEEEEEEEEE
Confidence                12778888 9988999999996    223567889999999999999999999998

It also includes other proteins of the START superfamily []. ; PDB: 3QRZ_C 3CNW_A 3P9V_A 3OQU_B 3NEF_B 3JRQ_B 3KAY_A 3JRS_A 3KDJ_A 3NMN_C ....

>cd07819 SRPBCC_2 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

Probab=99.44  E-value=1e-11  Score=92.03  Aligned_cols=112  Identities=20%  Similarity=0.258  Sum_probs=81.7

Q ss_pred             CceEEEEcCCHHHHHHHhhcCCcccCCcCCCCeeeEEEEecccCCCCcEEEEEeecCCCCCcccchhccccccccccccc
Q 038195            1 METEVEIKSPADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSAGDFPATRTEEQTQSSHLRGLHYQW   80 (172)
Q Consensus         1 ~~~e~~i~apa~kvw~~~~d~~~~lpk~~P~~v~sve~~eGd~g~~Gsvr~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~   80 (172)
                      ++.++.|+||++++|+++.|.. .+|+|+|. +.++++++++.++.+....+++..++.                     
T Consensus         4 v~~s~~i~ap~e~V~~~l~D~~-~~~~w~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------   60 (140)
T cd07819           4 VSREFEIEAPPAAVMDVLADVE-AYPEWSPK-VKSVEVLLRDNDGRPEMVRIGVGAYGI---------------------   60 (140)
T ss_pred             EEEEEEEeCCHHHHHHHHhChh-hhhhhCcc-eEEEEEeccCCCCCEEEEEEEEeeeeE---------------------
Confidence            3678999999999999999995 79999996 999999776423333333444432221                     


Q ss_pred             ccceeeeeEEEEEecCCCceEEEEEEeCccccceeEEEEEEEEEecCCCcEEEEEEEEEecCC
Q 038195           81 SQHFVEKMKEKVELDPENKTVAMVVIEGDLMKHFKSYKVIIKVIPKSEGSLVKWIWEYEKLQE  143 (172)
Q Consensus        81 ~~~~~~~~kEri~~D~~~~~i~Y~vieGdl~~~~~s~~~t~~v~p~~dGs~v~w~~~ye~~~~  143 (172)
                          .....-+++.++ .+.++|+..+|.   ...++..+++++|.++||.|+|..++++...
T Consensus        61 ----~~~~~~~~~~~~-~~~i~~~~~~~~---~~~~~~~~~~~~~~~~~t~vt~~~~~~~~~~  115 (140)
T cd07819          61 ----KDTYALEYTWDG-AGSVSWTLVEGE---GNRSQEGSYTLTPKGDGTRVTFDLTVELTVP  115 (140)
T ss_pred             ----EEEEEEEEEEcC-CCcEEEEEeccc---ceeEEEEEEEEEECCCCEEEEEEEEEEecCC
Confidence                111122333444 678999999876   2567888999999999999999999998664

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>cd08865 SRPBCC_10 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

Probab=99.41  E-value=3e-11  Score=88.77  Aligned_cols=107  Identities=16%  Similarity=0.220  Sum_probs=84.9

Q ss_pred             CceEEEEcCCHHHHHHHhhcCCcccCCcCCCCeeeEEEEecccCCCCcEEEEEeecCCCCCcccchhccccccccccccc
Q 038195            1 METEVEIKSPADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSAGDFPATRTEEQTQSSHLRGLHYQW   80 (172)
Q Consensus         1 ~~~e~~i~apa~kvw~~~~d~~~~lpk~~P~~v~sve~~eGd~g~~Gsvr~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~   80 (172)
                      ++.++.|+||++++|+++.|+. .+|+|+|. +.+++.+.++..++|+...+....++.                     
T Consensus         1 ~~~~~~i~ap~~~Vw~~l~d~~-~~~~w~~~-~~~~~~~~~~~~~~g~~~~~~~~~~g~---------------------   57 (140)
T cd08865           1 VEESIVIERPVEEVFAYLADFE-NAPEWDPG-VVEVEKITDGPVGVGTRYHQVRKFLGR---------------------   57 (140)
T ss_pred             CceEEEEcCCHHHHHHHHHCcc-chhhhccC-ceEEEEcCCCCCcCccEEEEEEEecCc---------------------
Confidence            4678999999999999999985 78999996 788888765434789988887654443                     


Q ss_pred             ccceeeeeEEEEE-ecCCCceEEEEEEeCccccceeEEEEEEEEEecCCCcEEEEEEEEEe
Q 038195           81 SQHFVEKMKEKVE-LDPENKTVAMVVIEGDLMKHFKSYKVIIKVIPKSEGSLVKWIWEYEK  140 (172)
Q Consensus        81 ~~~~~~~~kEri~-~D~~~~~i~Y~vieGdl~~~~~s~~~t~~v~p~~dGs~v~w~~~ye~  140 (172)
                          ...+++++. +| +++.+.|...+|.+     .+..++.+.|.++||.++|+.+|+.
T Consensus        58 ----~~~~~~~v~~~~-p~~~~~~~~~~~~~-----~~~~~~~~~~~~~~t~v~~~~~~~~  108 (140)
T cd08865          58 ----RIELTYEITEYE-PGRRVVFRGSSGPF-----PYEDTYTFEPVGGGTRVRYTAELEP  108 (140)
T ss_pred             ----eEEEEEEEEEec-CCcEEEEEecCCCc-----ceEEEEEEEEcCCceEEEEEEEEcc
Confidence                223578888 77 55789999876643     2678899999988899999999987

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>cd07813 COQ10p_like Coenzyme Q-binding protein COQ10p and similar proteins

Probab=99.32  E-value=3.8e-11  Score=90.31  Aligned_cols=109  Identities=18%  Similarity=0.259  Sum_probs=84.7

Q ss_pred             CceEEEEcCCHHHHHHHhhcCCcccCCcCCCCeeeEEEEecccCCCCcEEEEEeecCCCCCcccchhccccccccccccc
Q 038195            1 METEVEIKSPADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSAGDFPATRTEEQTQSSHLRGLHYQW   80 (172)
Q Consensus         1 ~~~e~~i~apa~kvw~~~~d~~~~lpk~~P~~v~sve~~eGd~g~~Gsvr~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~   80 (172)
                      ++.++.|+||++.+|+++.|.. .+|+|+|. +++++++++++  .+....++...++.                     
T Consensus         1 ~~~s~~i~ap~~~v~~~i~D~~-~~~~~~p~-~~~~~vl~~~~--~~~~~~~~~~~~~~---------------------   55 (138)
T cd07813           1 YSKSRLVPYSAEQMFDLVADVE-RYPEFLPW-CTASRVLERDE--DELEAELTVGFGGI---------------------   55 (138)
T ss_pred             CeEEEEcCCCHHHHHHHHHHHH-hhhhhcCC-ccccEEEEcCC--CEEEEEEEEeeccc---------------------
Confidence            4678999999999999999995 79999996 99999999762  34444455444332                     


Q ss_pred             ccceeeeeEEEEEecCCCceEEEEEEeCccccceeEEEEEEEEEecCCC-cEEEEEEEEEecCC
Q 038195           81 SQHFVEKMKEKVELDPENKTVAMVVIEGDLMKHFKSYKVIIKVIPKSEG-SLVKWIWEYEKLQE  143 (172)
Q Consensus        81 ~~~~~~~~kEri~~D~~~~~i~Y~vieGdl~~~~~s~~~t~~v~p~~dG-s~v~w~~~ye~~~~  143 (172)
                          ...+..++.+++ .++|++..++|.    ++.+.++|++.|.++| |.|++.+.|++.++
T Consensus        56 ----~~~~~~~~~~~~-~~~i~~~~~~g~----~~~~~g~w~~~p~~~~~T~v~~~~~~~~~~~  110 (138)
T cd07813          56 ----RESFTSRVTLVP-PESIEAELVDGP----FKHLEGEWRFKPLGENACKVEFDLEFEFKSR  110 (138)
T ss_pred             ----cEEEEEEEEecC-CCEEEEEecCCC----hhhceeEEEEEECCCCCEEEEEEEEEEECCH
Confidence                222345666766 668899999884    4778899999999866 99999999999863

Coenzyme Q-binding protein COQ10p and similar proteins. COQ10p is a hydrophobic protein located in the inner membrane of mitochondria that binds coenzyme Q (CoQ), also called ubiquinone, which is an essential electron carrier of the respiratory chain. Deletion of the gene encoding COQ10p (COQ10 or YOL008W) in Saccharomyces cerevisiae results in respiratory defect because of the inability to oxidize NADH and succinate. COQ10p may function in the delivery of CoQ (Q6 in budding yeast) to its proper location for electron transport. The human homolog, called Q-binding protein COQ10 homolog A (COQ10A), is able to fully complement for the absence of COQ10p in fission yeast. Human COQ10A also has a splice variant COQ10B. COQ10p belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and the

>cd08861 OtcD1_ARO-CYC_like N-terminal and C-terminal aromatase/cyclase domains of Streptomyces rimosus OtcD1 and related domains

Probab=99.30  E-value=2.5e-10  Score=85.63  Aligned_cols=111  Identities=19%  Similarity=0.236  Sum_probs=80.2

Q ss_pred             CceEEEEcCCHHHHHHHhhcCCcccCCcCCCCeeeEEEEecccCCCCcEEEEEeecCCCCCcccchhccccccccccccc
Q 038195            1 METEVEIKSPADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSAGDFPATRTEEQTQSSHLRGLHYQW   80 (172)
Q Consensus         1 ~~~e~~i~apa~kvw~~~~d~~~~lpk~~P~~v~sve~~eGd~g~~Gsvr~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~   80 (172)
                      ++.++.|+||++++|+++.|+. ..|+|+|.  .++++++++ ++...++.+....+|.                 .   
T Consensus         1 ~~~s~~i~ap~~~V~~~l~D~~-~~p~~~p~--~~~~~~~~~-~~~~~~~~~~~~~~g~-----------------~---   56 (142)
T cd08861           1 VEHSVTVAAPAEDVYDLLADAE-RWPEFLPT--VHVERLELD-GGVERLRMWATAFDGS-----------------V---   56 (142)
T ss_pred             CeEEEEEcCCHHHHHHHHHhHH-hhhccCCC--ceEEEEEEc-CCEEEEEEEEEcCCCc-----------------E---
Confidence            4688999999999999999996 78999996  566666653 1112355454432222                 0   


Q ss_pred             ccceeeeeEEEEE-ecCCCceEEEEEEeCccccceeEEEEEEEEEecCCC-cEEEEEEEEEecCC
Q 038195           81 SQHFVEKMKEKVE-LDPENKTVAMVVIEGDLMKHFKSYKVIIKVIPKSEG-SLVKWIWEYEKLQE  143 (172)
Q Consensus        81 ~~~~~~~~kEri~-~D~~~~~i~Y~vieGdl~~~~~s~~~t~~v~p~~dG-s~v~w~~~ye~~~~  143 (172)
                          ..+  +... +|++.+.|.|..+++.-  .+..+.++++|+|.++| |.|+|..+|+....
T Consensus        57 ----~~~--~~~~~~~~~~~~i~~~~~~~~~--~~~~~~g~w~~~~~~~~~t~Vt~~~~~~~~~~  113 (142)
T cd08861          57 ----HTW--TSRRVLDPEGRRIVFRQEEPPP--PVASMSGEWRFEPLGGGGTRVTLRHDFTLGID  113 (142)
T ss_pred             ----EEE--EEEEEEcCCCCEEEEEEeeCCC--ChhhheeEEEEEECCCCcEEEEEEEEEEECCC
Confidence                222  3344 88888899999988431  24778889999999855 99999999998864

This family includes the N- and C- terminal aromatase/cyclase (ARO/CYC) domains of Streptomyces rimosus OtcD1 and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, didomain and monodomain. Didomain aromatase/cyclases (ARO/CYCs), contain two ARO/CYC domains, and are associated with C7-C12 first ring cyclized polyketides. Streptomyces rimosus OtcD1 is a didomain ARO/CYC. The polyketide Oxytetracycline (OTC) is a broad spectrum antibiotic made by Streptomyces rimosus. The gene encoding OtcD1 is part of oxytetracycline (OTC) gene cluster. Disruption of this

>cd07812 SRPBCC START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily

Probab=99.24  E-value=6.6e-10  Score=79.07  Aligned_cols=112  Identities=23%  Similarity=0.292  Sum_probs=88.1

Q ss_pred             CceEEEEcCCHHHHHHHhhcCCcccCCcCCCCeeeEEEEecccCCCCcEEEEEeecCCCCCcccchhccccccccccccc
Q 038195            1 METEVEIKSPADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSAGDFPATRTEEQTQSSHLRGLHYQW   80 (172)
Q Consensus         1 ~~~e~~i~apa~kvw~~~~d~~~~lpk~~P~~v~sve~~eGd~g~~Gsvr~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~   80 (172)
                      ++.++.|+||++++|+++.|.. .+++|+|. +.++++.++.....|....+.+. ++.                     
T Consensus         1 ~~~~~~i~a~~~~v~~~l~d~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~---------------------   56 (141)
T cd07812           1 VEASIEIPAPPEAVWDLLSDPE-RWPEWSPG-LERVEVLGGGEGGVGARFVGGRK-GGR---------------------   56 (141)
T ss_pred             CcEEEEeCCCHHHHHHHHhChh-hhhhhCcc-cceEEEcCCCCccceeEEEEEec-CCc---------------------
Confidence            4678999999999999999985 78999997 88888887653466776666654 222                     


Q ss_pred             ccceeeeeEEEEE-ecCCCceEEEEEEeCccccceeEEEEEEEEEecCC-CcEEEEEEEEEecCCC
Q 038195           81 SQHFVEKMKEKVE-LDPENKTVAMVVIEGDLMKHFKSYKVIIKVIPKSE-GSLVKWIWEYEKLQED  144 (172)
Q Consensus        81 ~~~~~~~~kEri~-~D~~~~~i~Y~vieGdl~~~~~s~~~t~~v~p~~d-Gs~v~w~~~ye~~~~~  144 (172)
                          ......++. +++ +..++|+...++..   ..+..++.+.+.++ ||.++|+..+......
T Consensus        57 ----~~~~~~~v~~~~~-~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~t~v~~~~~~~~~~~~  114 (141)
T cd07812          57 ----RLTLTSEVTEVDP-PRPGRFRVTGGGGG---VDGTGEWRLEPEGDGGTRVTYTVEYDPPGPL  114 (141)
T ss_pred             ----cccceEEEEEecC-CCceEEEEecCCCC---cceeEEEEEEECCCCcEEEEEEEEEecCCcc
Confidence                123567888 766 77899999987764   57888999999988 7999999999988754

SRPBCC domains have a deep hydrophobic ligand-binding pocket; they bind diverse ligands. Included in this superfamily are the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), as well as the SRPBCC domains of phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of this superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>cd07820 SRPBCC_3 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

Probab=99.13  E-value=2.1e-09  Score=81.23  Aligned_cols=109  Identities=13%  Similarity=0.191  Sum_probs=84.4

Q ss_pred             CceEEEEcCCHHHHHHHhhcCCcccCCcCCCCeeeEEEEecccC--CCCcEEEEEeecCCCCCcccchhccccccccccc
Q 038195            1 METEVEIKSPADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDWE--SHGSVKSWTFSAGDFPATRTEEQTQSSHLRGLHY   78 (172)
Q Consensus         1 ~~~e~~i~apa~kvw~~~~d~~~~lpk~~P~~v~sve~~eGd~g--~~Gsvr~~~~~~gg~~~~~~~~~~~~~~~~~~~~   78 (172)
                      ++.++.|+||+++||+.+.|.. ++|+|+|+ +.++++++.+++  .+|+.-.+.+...+.                 . 
T Consensus         1 ~~~s~~I~ap~e~V~~~~~d~~-~~~~~~p~-~~~v~~~~~~~~~~~~G~~~~~~~~~~~~-----------------~-   60 (137)
T cd07820           1 LERSTVIPAPIEEVFDFHSRPD-NLERLTPP-WLEFAVLGRTPGLIYGGARVTYRLRHFGI-----------------P-   60 (137)
T ss_pred             CeEEEEcCCCHHHHHHHHcCcc-hHHhcCCC-CCCeEEEecCCCcccCCcEEEEEEEecCC-----------------c-
Confidence            5789999999999999999986 79999997 889999853322  468888888776654                 1 


Q ss_pred             ccccceeeeeEEEEE-ecCCCceEEEEEEeCccccceeEEEEEEEEEecCCCcEEEEEEEEEec
Q 038195           79 QWSQHFVEKMKEKVE-LDPENKTVAMVVIEGDLMKHFKSYKVIIKVIPKSEGSLVKWIWEYEKL  141 (172)
Q Consensus        79 ~~~~~~~~~~kEri~-~D~~~~~i~Y~vieGdl~~~~~s~~~t~~v~p~~dGs~v~w~~~ye~~  141 (172)
                            .++ +-++. ++ .++.+++..+.|.    +.++..+..++|.++||.+++.++|+..
T Consensus        61 ------~~w-~~~it~~~-p~~~f~~~~~~G~----~~~w~h~~~f~~~~~gT~vt~~v~~~~p  112 (137)
T cd07820          61 ------QRW-TTEITEVE-PPRRFVDEQVSGP----FRSWRHTHRFEAIGGGTLMTDRVEYRLP  112 (137)
T ss_pred             ------eEE-EEEEEEEc-CCCeEEEEeccCC----chhCEEEEEEEECCCceEEEEEEEEeCC
Confidence                  222 44455 55 4556888888765    3667788899998889999999999983

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>cd07824 SRPBCC_6 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

Probab=99.11  E-value=6.6e-09  Score=79.26  Aligned_cols=108  Identities=19%  Similarity=0.323  Sum_probs=77.1

Q ss_pred             ceEEEEcCCHHHHHHHhhcCCcccCCcCCCCeeeEEEEe-cccCCCCcEEEEEeecC-CCCCcccchhcccccccccccc
Q 038195            2 ETEVEIKSPADKFYNTFSSKAHTVPNMSPGNLHGVEVHE-GDWESHGSVKSWTFSAG-DFPATRTEEQTQSSHLRGLHYQ   79 (172)
Q Consensus         2 ~~e~~i~apa~kvw~~~~d~~~~lpk~~P~~v~sve~~e-Gd~g~~Gsvr~~~~~~g-g~~~~~~~~~~~~~~~~~~~~~   79 (172)
                      +.+..|+||+++||+++.|.. .+|+|+|. ++++++++ |++.+.|+..+...... +.                    
T Consensus         4 ~~~~~i~ap~e~Vw~~~tD~~-~~~~w~~~-v~~~~~~~~~~~~~~g~~~~~~~~~~~~~--------------------   61 (146)
T cd07824           4 HTVWRIPAPPEAVWDVLVDAE-SWPDWWPG-VERVVELEPGDEAGIGARRRYTWRGLLPY--------------------   61 (146)
T ss_pred             eEEEEecCCHHHHHHHHhChh-hcchhhhc-eEEEEEccCCCCCCcceEEEEEEEecCCc--------------------
Confidence            567899999999999999985 89999996 99999987 34346777765443221 11                    


Q ss_pred             cccceeeeeEEEEEecCCCceEEEEEEeCccccceeEEEEEEEEEecCCCcEEEEEEEEEecC
Q 038195           80 WSQHFVEKMKEKVELDPENKTVAMVVIEGDLMKHFKSYKVIIKVIPKSEGSLVKWIWEYEKLQ  142 (172)
Q Consensus        80 ~~~~~~~~~kEri~~D~~~~~i~Y~vieGdl~~~~~s~~~t~~v~p~~dGs~v~w~~~ye~~~  142 (172)
                           .-...-++.-.+..+.+.|+. +|++.     ...+++|+|.++||.|+++.+++..+
T Consensus        62 -----~~~~~~~v~~~~p~~~~~~~~-~g~~~-----~~~~~~~~~~~~gt~vt~~~~~~~~~  113 (146)
T cd07824          62 -----RLRFELRVTRIEPLSLLEVRA-SGDLE-----GVGRWTLAPDGSGTVVRYDWEVRTTK  113 (146)
T ss_pred             -----EEEEEEEEEeecCCcEEEEEE-EEeee-----EEEEEEEEEcCCCEEEEEEEEEEcCH
Confidence                 011223344224566788874 66642     25788999988889999999999865

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>cd08860 TcmN_ARO-CYC_like N-terminal aromatase/cyclase domain of the multifunctional protein tetracenomycin (TcmN) and related domains

Probab=99.11  E-value=6.6e-09  Score=80.65  Aligned_cols=111  Identities=22%  Similarity=0.300  Sum_probs=81.0

Q ss_pred             ceEEEEcCCHHHHHHHhhcCCcccCCcCCCCeeeEEEEecccCCCCcEEEEEeecCCCCCcccchhcccccccccccccc
Q 038195            2 ETEVEIKSPADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSAGDFPATRTEEQTQSSHLRGLHYQWS   81 (172)
Q Consensus         2 ~~e~~i~apa~kvw~~~~d~~~~lpk~~P~~v~sve~~eGd~g~~Gsvr~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~   81 (172)
                      +.+++|+|||+.+|+++.|.. ..|.|+|. ++++++++.++.+.|+--++.+..+|.                 .+   
T Consensus         4 ~~si~i~a~~~~v~~lvaDv~-~~P~~~~~-~~~~~~l~~~~~~~~~r~~i~~~~~g~-----------------~~---   61 (146)
T cd08860           4 DNSIVIDAPLDLVWDMTNDIA-TWPDLFSE-YAEAEVLEEDGDTVRFRLTMHPDANGT-----------------VW---   61 (146)
T ss_pred             eeEEEEcCCHHHHHHHHHhhh-hhhhhccc-eEEEEEEEecCCeEEEEEEEEeccCCE-----------------EE---
Confidence            578999999999999999986 78999996 999999886533455322223322332                 12   


Q ss_pred             cceeeeeEEEEEecCCCceEEEE-EEeCccccceeEEEEEEEEEecCCCcEEEEEEEEEecCC
Q 038195           82 QHFVEKMKEKVELDPENKTVAMV-VIEGDLMKHFKSYKVIIKVIPKSEGSLVKWIWEYEKLQE  143 (172)
Q Consensus        82 ~~~~~~~kEri~~D~~~~~i~Y~-vieGdl~~~~~s~~~t~~v~p~~dGs~v~w~~~ye~~~~  143 (172)
                          .+. -+...|+..+++.+. ...|    ++.+...+++|+|.++||.|++..+|+..++
T Consensus        62 ----~w~-s~~~~~~~~~~i~~~~~~~~----p~~~m~~~W~f~~~~~gT~V~~~~~~~~~~~  115 (146)
T cd08860          62 ----SWV-SERTLDPVNRTVRARRVETG----PFAYMNIRWEYTEVPEGTRMRWVQDFEMKPG  115 (146)
T ss_pred             ----EEE-EEEEecCCCcEEEEEEecCC----CcceeeeeEEEEECCCCEEEEEEEEEEECCC
Confidence                222 233478888888874 2222    3788999999999988899999999997754

This family includes the N-terminal aromatase/cyclase (ARO/CYC) domain of Streptomyces glaucescens TcmN, and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, monodomain and didomain. Monodomain aromatase/cyclases have a single ARO/CYC domain. For some, such as TcmN, this single domain is linked to a second domain of unrelated function. TcmN is a multifunctional cyclase-dehydratase-O-methyl transferase. Its N-terminal ARO/CYC domain participates in polyketide binding and catalysis; it promotes C9-C14 first-ring (and C7-C16 second-ring) cyclizations.

>cd07825 SRPBCC_7 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

Probab=99.06  E-value=1.1e-08  Score=76.80  Aligned_cols=135  Identities=11%  Similarity=0.139  Sum_probs=88.8

Q ss_pred             CceEEEEcCCHHHHHHHhhcCCcccCCcCCCCeeeEEEEeccc-CCCCcEEEEEeecCCCCCcccchhcccccccccccc
Q 038195            1 METEVEIKSPADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDW-ESHGSVKSWTFSAGDFPATRTEEQTQSSHLRGLHYQ   79 (172)
Q Consensus         1 ~~~e~~i~apa~kvw~~~~d~~~~lpk~~P~~v~sve~~eGd~-g~~Gsvr~~~~~~gg~~~~~~~~~~~~~~~~~~~~~   79 (172)
                      ++.++.|+||+++||+++.|+. .+|+|.|... ......++. -++|+..++.....+.+                   
T Consensus         2 i~~~~~i~ap~e~Vw~~l~d~~-~~~~W~~~~~-~~~~~~~~~~~~~G~~~~~~~~~~g~~-------------------   60 (144)
T cd07825           2 VSVSRTVDAPAEAVFAVLADPR-RHPEIDGSGT-VREAIDGPRILAVGDVFRMAMRLDGGP-------------------   60 (144)
T ss_pred             eEEEEEEeCCHHHHHHHHhCcc-ccceeCCCCc-cccccCCCccCCCCCEEEEEEEcCCCc-------------------
Confidence            4678999999999999999995 7999998522 222334432 37898888776543320                   


Q ss_pred             cccceeeeeEEEEE-ecCCCceEEEEEE-eCccccceeEEEEEEEEEecCCC-cEEEEEEEEEecCCCCC---ChhhhhH
Q 038195           80 WSQHFVEKMKEKVE-LDPENKTVAMVVI-EGDLMKHFKSYKVIIKVIPKSEG-SLVKWIWEYEKLQEDGP---TPSKYVD  153 (172)
Q Consensus        80 ~~~~~~~~~kEri~-~D~~~~~i~Y~vi-eGdl~~~~~s~~~t~~v~p~~dG-s~v~w~~~ye~~~~~~~---~p~~~~~  153 (172)
                           . .+..++. +++. +.++|+.. .+..   ......++.++|.++| |.++++..|...+....   .......
T Consensus        61 -----~-~~~~~v~~~~p~-~~l~~~~~~~~~~---~~~~~~~~~l~~~~~g~T~vt~~~~~~g~~~~~~~~~~~~~~~~  130 (144)
T cd07825          61 -----Y-RITNHVVAFEEN-RLIAWRPGPAGQE---PGGHRWRWELEPIGPGRTRVTETYDWSAVTDLKELLGFPAFPEV  130 (144)
T ss_pred             -----e-EEEEEEEEECCC-CEEEEEccCCCCC---CCceeEEEEEEECCCCcEEEEEEEeccCChhhhhccccCCCCHH
Confidence                 2 2345566 6665 45888853 2222   1234567889998865 99999998886644211   1223455


Q ss_pred             HHHHHHHHHHHHH
Q 038195          154 FVTDLTKNIDAHL  166 (172)
Q Consensus       154 ~~~~~~k~ie~yl  166 (172)
                      .....+..|++||
T Consensus       131 g~~~~l~~L~~~~  143 (144)
T cd07825         131 QLEASLDRLATLA  143 (144)
T ss_pred             HHHHHHHHHHHHh
Confidence            6778888888886

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>cd08862 SRPBCC_Smu440-like Ligand-binding SRPBCC domain of Streptococcus mutans Smu

Probab=99.06  E-value=1.3e-08  Score=75.26  Aligned_cols=104  Identities=14%  Similarity=0.099  Sum_probs=74.1

Q ss_pred             CceEEEEcCCHHHHHHHhhcCCcccCCcCCCCeeeEEEEecccCCCCcEEEEEeecCCCCCcccchhccccccccccccc
Q 038195            1 METEVEIKSPADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSAGDFPATRTEEQTQSSHLRGLHYQW   80 (172)
Q Consensus         1 ~~~e~~i~apa~kvw~~~~d~~~~lpk~~P~~v~sve~~eGd~g~~Gsvr~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~   80 (172)
                      ++.++.|+||+++||+++.|.. .+|+|+|+ ++++++..+.+ ++|+...++... +.                     
T Consensus         3 ~~~~~~i~Ap~~~Vw~~~~d~~-~~~~w~~~-~~~~~~~~~~~-~~G~~~~~~~~~-~~---------------------   57 (138)
T cd08862           3 FEATIVIDAPPERVWAVLTDVE-NWPAWTPS-VETVRLEGPPP-AVGSSFKMKPPG-LV---------------------   57 (138)
T ss_pred             EEEEEEEcCCHHHHHHHHHhhh-hcccccCc-ceEEEEecCCC-CCCcEEEEecCC-CC---------------------
Confidence            3678999999999999999985 78999996 89999876542 677766554321 11                     


Q ss_pred             ccceeeeeEEEEE-ecCCCceEEEEEEeCccccceeEEEEEEEEEecCC-CcEEEEEEEEEec
Q 038195           81 SQHFVEKMKEKVE-LDPENKTVAMVVIEGDLMKHFKSYKVIIKVIPKSE-GSLVKWIWEYEKL  141 (172)
Q Consensus        81 ~~~~~~~~kEri~-~D~~~~~i~Y~vieGdl~~~~~s~~~t~~v~p~~d-Gs~v~w~~~ye~~  141 (172)
                            .+..++. +++. +.++++....     ...+..++.|++.++ ||.++|+.+|...
T Consensus        58 ------~~~~~i~~~~p~-~~~~~~~~~~-----~~~~~~~~~~~~~~~~~t~l~~~~~~~~~  108 (138)
T cd08862          58 ------RSTFTVTELRPG-HSFTWTGPAP-----GISAVHRHEFEAKPDGGVRVTTSESLSGP  108 (138)
T ss_pred             ------ceEEEEEEecCC-CEEEEEecCC-----CEEEEEEEEEEEcCCCcEEEEEEEEeecc
Confidence                  1345666 7755 4588875432     134457889999874 5999998887643

440 and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Streptococcus mutans Smu.440 and related proteins. This domain belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Streptococcus mutans is a dental pathogen, and the leading cause of dental caries. In this pathogen, the gene encoding Smu.440 is in the same operon as the gene encoding SMU.441, a member of the MarR protein family of transcriptional regulators involved in multiple antibiotic resistance. It has been suggested that SMU.440 is involved in polyketide-like antibiotic resistance.

>PF03364 Polyketide_cyc: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR005031 Members of this family of enzymes from Streptomyces spp

Probab=99.04  E-value=9e-09  Score=76.15  Aligned_cols=110  Identities=22%  Similarity=0.432  Sum_probs=78.1

Q ss_pred             EcCCHHHHHHHhhcCCcccCCcCCCCeeeEEEEecccCCCCcEEEEEeecCCCCCcccchhcccccccccccccccceee
Q 038195            7 IKSPADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSAGDFPATRTEEQTQSSHLRGLHYQWSQHFVE   86 (172)
Q Consensus         7 i~apa~kvw~~~~d~~~~lpk~~P~~v~sve~~eGd~g~~Gsvr~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (172)
                      |+||++++|+++.|.. .+|.|+|. ++++++++.++ . +..-.+....++.                 .       ..
T Consensus         1 V~ap~~~V~~~i~D~e-~~~~~~p~-~~~v~vl~~~~-~-~~~~~~~~~~~~~-----------------~-------~~   52 (130)
T PF03364_consen    1 VNAPPEEVWSVITDYE-NYPRFFPP-VKEVRVLERDG-D-GMRARWEVKFGGI-----------------K-------RS   52 (130)
T ss_dssp             ESS-HHHHHHHHTTGG-GHHHHCTT-EEEEEEEEEEC-C-EEEEEEEECTTTT-----------------C-------EE
T ss_pred             CCCCHHHHHHHHHHHH-HHHHhCCC-CceEEEEEeCC-C-eEEEEEEEecCCE-----------------E-------EE
Confidence            6899999999999985 79999996 99999999773 2 3333455544443                 0       22


Q ss_pred             eeEEEEEecCCCceEEEEEEeCccccceeEEEEEEEEEecCC---CcEEEEEEEEEecCCCCCChhhh
Q 038195           87 KMKEKVELDPENKTVAMVVIEGDLMKHFKSYKVIIKVIPKSE---GSLVKWIWEYEKLQEDGPTPSKY  151 (172)
Q Consensus        87 ~~kEri~~D~~~~~i~Y~vieGdl~~~~~s~~~t~~v~p~~d---Gs~v~w~~~ye~~~~~~~~p~~~  151 (172)
                       ...++..++... +.+..++|++    +++..++++.|.++   |+.++++.+|+.... .+.|..+
T Consensus        53 -~~~~~~~~~~~~-~~~~~~~g~~----~~~~g~W~~~~~~~~~~g~~~~v~~~~~~~~~-~~~~~~~  113 (130)
T PF03364_consen   53 -WTSRVTEDPPER-IRFEQISGPF----KSFEGSWRFEPLGGNEGGTRTRVTYDYEVDPP-GPLPGFL  113 (130)
T ss_dssp             -EEEEEEEECTTT-EEEESSETTE----EEEEEEEEEEEETTECCEEEEEEEEEEEEETS-SSSHHHH
T ss_pred             -EEEEEEEEEeee-eeeeecCCCc----hhcEEEEEEEECCCCcCCCEEEEEEEEEEecC-cHhHHHH
Confidence             355666444444 8888888765    89999999999998   788888888877443 2335444

are involved in polyketide (linear poly-beta-ketones) synthesis.; PDB: 1T17_A 3GGN_B 2KCZ_A 2D4R_B 2REZ_A 2RES_A 3TVQ_A 2RER_A 2KF2_A 3TL1_A ....

>cd07822 SRPBCC_4 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

Probab=98.99  E-value=7e-08  Score=70.99  Aligned_cols=108  Identities=15%  Similarity=0.168  Sum_probs=77.3

Q ss_pred             CceEEEEcCCHHHHHHHhhcCCcccCCcCCCCeeeEEEEecccCCCCcEEEEEeecCC-CCCcccchhcccccccccccc
Q 038195            1 METEVEIKSPADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSAGD-FPATRTEEQTQSSHLRGLHYQ   79 (172)
Q Consensus         1 ~~~e~~i~apa~kvw~~~~d~~~~lpk~~P~~v~sve~~eGd~g~~Gsvr~~~~~~gg-~~~~~~~~~~~~~~~~~~~~~   79 (172)
                      ++.++.|+||+++||+++.|.. .+|+|+|. +..++...   .++|+...+.+..++ .                    
T Consensus         2 v~~~~~i~ap~~~Vw~~~~d~~-~~~~w~~~-~~~~~~~~---~~~G~~~~~~~~~~~~~--------------------   56 (141)
T cd07822           2 ISTEIEINAPPEKVWEVLTDFP-SYPEWNPF-VRSATGLS---LALGARLRFVVKLPGGP--------------------   56 (141)
T ss_pred             eEEEEEecCCHHHHHHHHhccc-cccccChh-heeEeccc---cCCCCEEEEEEeCCCCC--------------------
Confidence            4678999999999999999985 78999996 65654431   257888777765432 2                    


Q ss_pred             cccceeeeeEEEEE-ecCCCceEEEEEEeCccccceeEEEEEEEEEecC-CCcEEEEEEEEEec
Q 038195           80 WSQHFVEKMKEKVE-LDPENKTVAMVVIEGDLMKHFKSYKVIIKVIPKS-EGSLVKWIWEYEKL  141 (172)
Q Consensus        80 ~~~~~~~~~kEri~-~D~~~~~i~Y~vieGdl~~~~~s~~~t~~v~p~~-dGs~v~w~~~ye~~  141 (172)
                           .-...+++. +|+ .+.+.|+...|+..  .-....++.|+|.+ +||.++|...|...
T Consensus        57 -----~~~~~~~v~~~~p-~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~T~~~~~~~~~g~  112 (141)
T cd07822          57 -----PRSFKPRVTEVEP-PRRLAWRGGLPFPG--LLDGEHSFELEPLGDGGTRFVHRETFSGL  112 (141)
T ss_pred             -----cEEEEEEEEEEcC-CCEeEEEecCCCCc--EeeEEEEEEEEEcCCCcEEEEEeeEEEEE
Confidence                 123566777 876 46889998776532  12455788999984 55999999877643

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>cd05018 CoxG Carbon monoxide dehydrogenase subunit G (CoxG)

Probab=98.99  E-value=3.7e-08  Score=73.16  Aligned_cols=112  Identities=13%  Similarity=0.198  Sum_probs=73.4

Q ss_pred             CceEEEEcCCHHHHHHHhhcCCcccCCcCCCCeeeEEEEecccCCCCcEEEEEeecCCCCCcccchhccccccccccccc
Q 038195            1 METEVEIKSPADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSAGDFPATRTEEQTQSSHLRGLHYQW   80 (172)
Q Consensus         1 ~~~e~~i~apa~kvw~~~~d~~~~lpk~~P~~v~sve~~eGd~g~~Gsvr~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~   80 (172)
                      ++.++.+++|++++|+++.|.. .+|+|+|. ++++++++++  ...  -.+++..+..  .               .. 
T Consensus         3 ~~~~~~i~a~~e~v~~~l~D~~-~~~~w~p~-~~~~~~~~~~--~~~--~~~~~~~~~~--~---------------~~-   58 (144)
T cd05018           3 ISGEFRIPAPPEEVWAALNDPE-VLARCIPG-CESLEKIGPN--EYE--ATVKLKVGPV--K---------------GT-   58 (144)
T ss_pred             eeeEEEecCCHHHHHHHhcCHH-HHHhhccc-hhhccccCCC--eEE--EEEEEEEccE--E---------------EE-
Confidence            3678899999999999999985 79999996 8888877643  111  1122222211  0               00 


Q ss_pred             ccceeeeeEEEEE-ecCCCceEEEEEEeCccccceeEEEEEEEEEecCCCcEEEEEEEEEecCC
Q 038195           81 SQHFVEKMKEKVE-LDPENKTVAMVVIEGDLMKHFKSYKVIIKVIPKSEGSLVKWIWEYEKLQE  143 (172)
Q Consensus        81 ~~~~~~~~kEri~-~D~~~~~i~Y~vieGdl~~~~~s~~~t~~v~p~~dGs~v~w~~~ye~~~~  143 (172)
                          .. ..-++. +|+. +.+.++....+. .....+..++.++|.++||.++|+.+|+..+.
T Consensus        59 ----~~-~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~gT~v~~~~~~~~~g~  115 (144)
T cd05018          59 ----FK-GKVELSDLDPP-ESYTITGEGKGG-AGFVKGTARVTLEPDGGGTRLTYTADAQVGGK  115 (144)
T ss_pred             ----EE-EEEEEEecCCC-cEEEEEEEEcCC-CceEEEEEEEEEEecCCcEEEEEEEEEEEccC
Confidence                11 123444 4443 567777654222 12467899999999966799999999998764

CoxG has been shown, in Oligotropha carboxidovorans, to anchor the carbon monoxide (CO) dehydrogenase to the cytoplasmic membrane. The gene encoding CoxG is part of the Cox cluster (coxBCMSLDEFGHIK) located on a low-copy-number, circular, megaplasmid pHCG3. This cluster includes genes encoding subunits of CO dehydrogenase and several accessory components involved in the utilization of CO. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.

>cd07814 SRPBCC_CalC_Aha1-like Putative hydrophobic ligand-binding SRPBCC domain of Micromonospora echinospora CalC, human Aha1, and related proteins

Probab=98.96  E-value=1.4e-08  Score=74.99  Aligned_cols=110  Identities=10%  Similarity=0.055  Sum_probs=76.3

Q ss_pred             CceEEEEcCCHHHHHHHhhcCCcccCCcCCCCeeeEEEEecccCCCCcEEEEEeecCCCCCcccchhccccccccccccc
Q 038195            1 METEVEIKSPADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSAGDFPATRTEEQTQSSHLRGLHYQW   80 (172)
Q Consensus         1 ~~~e~~i~apa~kvw~~~~d~~~~lpk~~P~~v~sve~~eGd~g~~Gsvr~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~   80 (172)
                      ++.++.|+||++.||+++.|.. .+|+|+|. +..++   ++...-|+.+.+....+|.                     
T Consensus         2 i~~s~~I~a~~~~Vw~~l~d~~-~~~~w~~~-~~~~~---~~~~~Gg~~~~~~~~~~g~---------------------   55 (139)
T cd07814           2 ITIEREFDAPPELVWRALTDPE-LLAQWFGP-TTTAE---MDLRVGGRWFFFMTGPDGE---------------------   55 (139)
T ss_pred             eEEEEEecCCHHHHHHHcCCHH-HHHhhhCc-CCceE---EcccCCceEEEEEECCCCC---------------------
Confidence            4678999999999999999985 78999995 22222   2211116666554333322                     


Q ss_pred             ccceeeeeEEEEE-ecCCCceEEEEEEeCccccceeEEEEEEEEEecCCCcEEEEEEEEEecC
Q 038195           81 SQHFVEKMKEKVE-LDPENKTVAMVVIEGDLMKHFKSYKVIIKVIPKSEGSLVKWIWEYEKLQ  142 (172)
Q Consensus        81 ~~~~~~~~kEri~-~D~~~~~i~Y~vieGdl~~~~~s~~~t~~v~p~~dGs~v~w~~~ye~~~  142 (172)
                          .-.+..++. +|+. +.+.|+...++. ...-....++.|.|.++||.++|+.+|....
T Consensus        56 ----~~~~~~~i~~~~~~-~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~T~v~~~~~~~~~~  112 (139)
T cd07814          56 ----EGWVSGEVLEVEPP-RRLVFTWAFSDE-TPGPETTVTVTLEETGGGTRLTLTHSGFPEE  112 (139)
T ss_pred             ----EEeccEEEEEEcCC-CeEEEEecccCC-CCCCceEEEEEEEECCCCEEEEEEEEccChH
Confidence                223567777 7755 679999887753 1123467788999999889999999998764

This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Micromonospora echinospora CalC, human Aha1, and related proteins. Proteins in this group belong to the SRPBCC domain superfamily of proteins, which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM), by a self sacrificing mechanism which results in inactivation of both CalC and the highly reactive diradical enediyne species. MeCalC can also inactivate two other enediynes, shishijimicin and namenamicin. A crucial Gly of the MeCalC CLM resistance mechanism is not conserved in this subgroup. This family also includes the C-terminal, Bet v1-like domain of Aha1, one of several co-chaperones, which regulate the dimeric chaperone Hsp90. Aha1 promotes dimer

>cd07818 SRPBCC_1 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

Probab=98.93  E-value=5e-08  Score=73.83  Aligned_cols=110  Identities=16%  Similarity=0.172  Sum_probs=76.9

Q ss_pred             CceEEEEcCCHHHHHHHhhcCCcccCCcCCCCeee---EEEEe-cccCCCCcEEEEEeecC-CCCCcccchhcccccccc
Q 038195            1 METEVEIKSPADKFYNTFSSKAHTVPNMSPGNLHG---VEVHE-GDWESHGSVKSWTFSAG-DFPATRTEEQTQSSHLRG   75 (172)
Q Consensus         1 ~~~e~~i~apa~kvw~~~~d~~~~lpk~~P~~v~s---ve~~e-Gd~g~~Gsvr~~~~~~g-g~~~~~~~~~~~~~~~~~   75 (172)
                      ++.++.|+||+++||+++.|.. .+|+|+|. +..   ++... +...++|+...++...+ +.                
T Consensus         4 ~~~s~~I~ap~e~V~~~i~D~~-~~~~W~p~-~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~----------------   65 (150)
T cd07818           4 VERSIVINAPPEEVFPYVNDLK-NWPEWSPW-EKLDPDMKRTYSGPDSGVGASYSWEGNDKVGE----------------   65 (150)
T ss_pred             EEEEEEEeCCHHHHHHHHhCcc-cCcccCch-hhcCcceEEEecCCCCCCCeEEEEecCCcccc----------------
Confidence            3678899999999999999996 79999995 433   22222 22136888877754331 11                


Q ss_pred             cccccccceeeeeEEEEE-ecCCCceEEEEEEeCccccceeEEEEEEEEEecCCCcEEEEEEEEEecCC
Q 038195           76 LHYQWSQHFVEKMKEKVE-LDPENKTVAMVVIEGDLMKHFKSYKVIIKVIPKSEGSLVKWIWEYEKLQE  143 (172)
Q Consensus        76 ~~~~~~~~~~~~~kEri~-~D~~~~~i~Y~vieGdl~~~~~s~~~t~~v~p~~dGs~v~w~~~ye~~~~  143 (172)
                                  ...++. +++ ++.+.|++..++...  ..+..++.++|.++||.++|+.+|+....
T Consensus        66 ------------~~~~v~~~~p-~~~i~~~~~~~~~~~--~~~~~~~~~~~~~~gT~v~~~~~~~~~~~  119 (150)
T cd07818          66 ------------GEMEITESVP-NERIEYELRFIKPFE--ATNDVEFTLEPVGGGTKVTWGMSGELPFP  119 (150)
T ss_pred             ------------eEEEEEecCC-CcEEEEEEEecCCcc--ccceEEEEEEEcCCceEEEEEEEecCCch
Confidence                        124455 654 567999998644321  36678999999988899999999987653

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>cd07817 SRPBCC_8 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

Probab=98.92  E-value=4.4e-08  Score=72.53  Aligned_cols=104  Identities=18%  Similarity=0.337  Sum_probs=73.7

Q ss_pred             CceEEEEcCCHHHHHHHhhcCCcccCCcCCCCeeeEEEEecccCCCCcEEEEEeecC-CCCCcccchhcccccccccccc
Q 038195            1 METEVEIKSPADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSAG-DFPATRTEEQTQSSHLRGLHYQ   79 (172)
Q Consensus         1 ~~~e~~i~apa~kvw~~~~d~~~~lpk~~P~~v~sve~~eGd~g~~Gsvr~~~~~~g-g~~~~~~~~~~~~~~~~~~~~~   79 (172)
                      ++.++.|+||++.||+++.|.. .+|+|.|. +++++++.|.    +.  .++.... |.                    
T Consensus         2 v~~~i~I~ap~e~V~~~~~D~~-~~~~w~~~-~~~~~~~~~~----~~--~~~~~~~~g~--------------------   53 (139)
T cd07817           2 VEKSITVNVPVEEVYDFWRDFE-NLPRFMSH-VESVEQLDDT----RS--HWKAKGPAGL--------------------   53 (139)
T ss_pred             eeEEEEeCCCHHHHHHHHhChh-hhHHHhhh-hcEEEEcCCC----ce--EEEEecCCCC--------------------
Confidence            4678999999999999999985 79999996 8899887542    22  2332221 22                    


Q ss_pred             cccceeeeeEEEEE-ecCCCceEEEEEEeCccccceeEEEEEEEEEecCC-CcEEEEEEEEEecCC
Q 038195           80 WSQHFVEKMKEKVE-LDPENKTVAMVVIEGDLMKHFKSYKVIIKVIPKSE-GSLVKWIWEYEKLQE  143 (172)
Q Consensus        80 ~~~~~~~~~kEri~-~D~~~~~i~Y~vieGdl~~~~~s~~~t~~v~p~~d-Gs~v~w~~~ye~~~~  143 (172)
                           ......++. .++ ++.|.|....|..     .+..++.|+|.++ +|.+++++.|++...
T Consensus        54 -----~~~~~~~v~~~~~-~~~i~~~~~~~~~-----~~~~~~~f~~~~~~~T~vt~~~~~~~~~~  108 (139)
T cd07817          54 -----SVEWDAEITEQVP-NERIAWRSVEGAD-----PNAGSVRFRPAPGRGTRVTLTIEYEPPGG  108 (139)
T ss_pred             -----cEEEEEEEeccCC-CCEEEEEECCCCC-----CcceEEEEEECCCCCeEEEEEEEEECCcc
Confidence                 112344555 545 4459998766542     4567888999777 499999999998753

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>PRK10724 hypothetical protein; Provisional

Probab=98.91  E-value=2.5e-08  Score=78.72  Aligned_cols=108  Identities=17%  Similarity=0.279  Sum_probs=81.9

Q ss_pred             ceEEEEcCCHHHHHHHhhcCCcccCCcCCCCeeeEEEEecccCCCCcEEEEEeecCCCCCcccchhcccccccccccccc
Q 038195            2 ETEVEIKSPADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSAGDFPATRTEEQTQSSHLRGLHYQWS   81 (172)
Q Consensus         2 ~~e~~i~apa~kvw~~~~d~~~~lpk~~P~~v~sve~~eGd~g~~Gsvr~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~   81 (172)
                      ..++.|.+|++++|+++.|.. ..|+|+|. .+++++++-+++  +.+..++.+-+|-                      
T Consensus        18 ~~~~~v~~s~~~v~~lv~Dve-~yp~flp~-~~~s~vl~~~~~--~~~a~l~v~~~g~----------------------   71 (158)
T PRK10724         18 SRTALVPYSAEQMYQLVNDVQ-SYPQFLPG-CTGSRVLESTPG--QMTAAVDVSKAGI----------------------   71 (158)
T ss_pred             EEEEEecCCHHHHHHHHHHHH-HHHHhCcc-cCeEEEEEecCC--EEEEEEEEeeCCc----------------------
Confidence            467889999999999999985 79999996 888888875422  3344444444443                      


Q ss_pred             cceeeeeEEEEEecCCCceEEEEEEeCccccceeEEEEEEEEEecCCC-cEEEEEEEEEecCC
Q 038195           82 QHFVEKMKEKVELDPENKTVAMVVIEGDLMKHFKSYKVIIKVIPKSEG-SLVKWIWEYEKLQE  143 (172)
Q Consensus        82 ~~~~~~~kEri~~D~~~~~i~Y~vieGdl~~~~~s~~~t~~v~p~~dG-s~v~w~~~ye~~~~  143 (172)
                         ......++.+++.+ +|.+.+++|+    ++++.+.|+|.|.++| |.|++..+|+....
T Consensus        72 ---~~~f~srv~~~~~~-~I~~~~~~Gp----F~~l~g~W~f~p~~~~~t~V~~~l~fef~s~  126 (158)
T PRK10724         72 ---SKTFTTRNQLTSNQ-SILMQLVDGP----FKKLIGGWKFTPLSQEACRIEFHLDFEFTNK  126 (158)
T ss_pred             ---cEEEEEEEEecCCC-EEEEEecCCC----hhhccceEEEEECCCCCEEEEEEEEEEEchH
Confidence               33345667765544 7999999985    4889999999998765 99999999997653

>cd07823 SRPBCC_5 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

Probab=98.80  E-value=3.1e-07  Score=69.97  Aligned_cols=114  Identities=15%  Similarity=0.161  Sum_probs=72.9

Q ss_pred             CceEEEEcCCHHHHHHHhhcCCcccCCcCCCCeeeEEEEecccCCCCcEEEEEeecCCCCCcccchhccccccccccccc
Q 038195            1 METEVEIKSPADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSAGDFPATRTEEQTQSSHLRGLHYQW   80 (172)
Q Consensus         1 ~~~e~~i~apa~kvw~~~~d~~~~lpk~~P~~v~sve~~eGd~g~~Gsvr~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~   80 (172)
                      ++.+++|+||++++|+++.|.. .++.|+|+ +++++.+.++    ...-.++...++-  .                  
T Consensus         1 ~~~~~~v~a~pe~vw~~l~D~~-~~~~~~pg-~~~~~~~~~~----~~~~~~~~~~g~~--~------------------   54 (146)
T cd07823           1 LENEFTVPAPPDRVWALLLDIE-RVAPCLPG-ASLTEVEGDD----EYKGTVKVKLGPI--S------------------   54 (146)
T ss_pred             CCceEEecCCHHHHHHHhcCHH-HHHhcCCC-ceeccccCCC----eEEEEEEEEEccE--E------------------
Confidence            4678999999999999999985 78999997 8887764322    1222333333322  0                  


Q ss_pred             ccceeee-eEEEEE-ecCCCceEEEEEEeCccc-cceeEEEEEEEEEecCCCcEEEEEEEEEecCCC
Q 038195           81 SQHFVEK-MKEKVE-LDPENKTVAMVVIEGDLM-KHFKSYKVIIKVIPKSEGSLVKWIWEYEKLQED  144 (172)
Q Consensus        81 ~~~~~~~-~kEri~-~D~~~~~i~Y~vieGdl~-~~~~s~~~t~~v~p~~dGs~v~w~~~ye~~~~~  144 (172)
                          ..+ ..=++. ++++.+.+.++.-.-+.. ..--....++++.|.++||.++|..+++..+..
T Consensus        55 ----~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~l~~~~~gT~v~~~~~~~~~g~l  117 (146)
T cd07823          55 ----ASFKGTARLLEDDEAARRAVLEATGKDARGQGTAEATVTLRLSPAGGGTRVTVDTDLALTGKL  117 (146)
T ss_pred             ----EEEEEEEEEEeccCCCcEEEEEEEEecCCCcceEEEEEEEEEEecCCcEEEEEEEEEEEeeEh
Confidence                011 112344 555788888775431111 011146678888886667999999999877653

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>COG3427 Carbon monoxide dehydrogenase subunit G, CoxG [Energy production and conversion]

Probab=98.42  E-value=8.6e-06  Score=63.98  Aligned_cols=137  Identities=15%  Similarity=0.250  Sum_probs=90.5

Q ss_pred             CceEEEEcCCHHHHHHHhhcCCcccCCcCCCCeeeEEEEecccCCCCcEEEEEeecCCCCCcccchhccccccccccccc
Q 038195            1 METEVEIKSPADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSAGDFPATRTEEQTQSSHLRGLHYQW   80 (172)
Q Consensus         1 ~~~e~~i~apa~kvw~~~~d~~~~lpk~~P~~v~sve~~eGd~g~~Gsvr~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~   80 (172)
                      ++-+..|++|++.+|+++.|.. .+...+|+ ++|++. +||    ...-++....|.-  ..                 
T Consensus         3 ~~G~f~V~~p~e~Vw~~L~dpe-~~a~ciPG-~qs~e~-~g~----e~~~~v~l~ig~l--~~-----------------   56 (146)
T COG3427           3 YEGTFRVAAPPEAVWEFLNDPE-QVAACIPG-VQSVET-NGD----EYTAKVKLKIGPL--KG-----------------   56 (146)
T ss_pred             ccceEEecCCHHHHHHHhcCHH-HHHhhcCC-cceeee-cCC----eEEEEEEEeecce--eE-----------------
Confidence            3568899999999999999985 67789997 999984 565    2222333333322  10                 


Q ss_pred             ccceeeeeEEEEE-ecCCCceEEEEEEeCccccceeEEEEEEEEEecCCCcEEEEEEEEEecCCCC-CChhhhh----HH
Q 038195           81 SQHFVEKMKEKVE-LDPENKTVAMVVIEGDLMKHFKSYKVIIKVIPKSEGSLVKWIWEYEKLQEDG-PTPSKYV----DF  154 (172)
Q Consensus        81 ~~~~~~~~kEri~-~D~~~~~i~Y~vieGdl~~~~~s~~~t~~v~p~~dGs~v~w~~~ye~~~~~~-~~p~~~~----~~  154 (172)
                          .-.-+=++. +|+..++|+...-+|.. ...-..+..+.++|.++|+++.|.+.-+-.+... .-+..+.    ..
T Consensus        57 ----~~~g~~~~~~v~~~~~~~~i~g~G~~~-~g~~~~~~~v~l~~~g~gt~v~w~~~~~~gg~laqlGsr~i~~~~~kl  131 (146)
T COG3427          57 ----TFSGRVRFVNVDEPPRSITINGSGGGA-AGFADGTVDVQLEPSGEGTRVNWFADANVGGKLAQLGSRLIDSVARKL  131 (146)
T ss_pred             ----EEEEEEEEccccCCCcEEEEEeecccc-cceeeeeeEEEEEEcCCCcEEEEEEEccccHHHHHHhHHHHHHHHHHH
Confidence                011233444 78999999888776444 3456788899999999999999999877665321 1122222    25


Q ss_pred             HHHHHHHHHHHHhh
Q 038195          155 VTDLTKNIDAHLLK  168 (172)
Q Consensus       155 ~~~~~k~ie~ylla  168 (172)
                      ...++.+|.++|.+
T Consensus       132 i~~~~~~l~~~l~~  145 (146)
T COG3427         132 INRFFDCLSSELAA  145 (146)
T ss_pred             HHHHHHHHHHHHhc
Confidence            56666777766643

>cd08893 SRPBCC_CalC_Aha1-like_GntR-HTH Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins; some contain an N-terminal GntR family winged HTH DNA-binding domain

Probab=98.27  E-value=2.1e-05  Score=57.93  Aligned_cols=130  Identities=12%  Similarity=0.074  Sum_probs=75.8

Q ss_pred             CceEEEEcCCHHHHHHHhhcCCcccCCcCCCCeeeEEEEecccCCCCcEEEEEeecCCCCCcccchhccccccccccccc
Q 038195            1 METEVEIKSPADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSAGDFPATRTEEQTQSSHLRGLHYQW   80 (172)
Q Consensus         1 ~~~e~~i~apa~kvw~~~~d~~~~lpk~~P~~v~sve~~eGd~g~~Gsvr~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~   80 (172)
                      ++.++.|+||+++||+++.|.. .+++|.+...     ..++. .+|.--++.....+.                     
T Consensus         2 ~~~~~~i~ap~e~Vw~~~td~~-~~~~W~~~~~-----~~~~~-~~G~~~~~~~~~~~~---------------------   53 (136)
T cd08893           2 FVYVTYIRATPEKVWQALTDPE-FTRQYWGGTT-----VESDW-KVGSAFEYRRGDDGT---------------------   53 (136)
T ss_pred             eEEEEEecCCHHHHHHHHcCch-hhhheecccc-----cccCC-cCCCeEEEEeCCCcc---------------------
Confidence            4678999999999999999985 7899998621     24442 455543433322101                     


Q ss_pred             ccceeeeeEEEEE-ecCCCceEEEEEEeCccc--cceeEEEEEEEEEecCCCcEEEEEEEEEecCCCCCChhhhhHHHHH
Q 038195           81 SQHFVEKMKEKVE-LDPENKTVAMVVIEGDLM--KHFKSYKVIIKVIPKSEGSLVKWIWEYEKLQEDGPTPSKYVDFVTD  157 (172)
Q Consensus        81 ~~~~~~~~kEri~-~D~~~~~i~Y~vieGdl~--~~~~s~~~t~~v~p~~dGs~v~w~~~ye~~~~~~~~p~~~~~~~~~  157 (172)
                          . .+.-++. ++ +++.+.|+...++..  ..-.....++.++|.++|+.+..+..-...+.  ..-.........
T Consensus        54 ----~-~~~~~v~~~~-~~~~l~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~t~l~~~~~~~~~~~--~~~~~~~~gw~~  125 (136)
T cd08893          54 ----V-DVEGEVLESD-PPRRLVHTWRAVWDPEMAAEPPSRVTFEIEPVGDVVKLTVTHDGFPPGS--PTLEGVSGGWPA  125 (136)
T ss_pred             ----c-ccceEEEEec-CCCeEEEEEecCCCcccCCCCCEEEEEEEEecCCcEEEEEEecCCCCch--hHHHhhhcCHHH
Confidence                0 1234455 65 455566666533321  11224566788889877776666655432221  112223345666


Q ss_pred             HHHHHHHHH
Q 038195          158 LTKNIDAHL  166 (172)
Q Consensus       158 ~~k~ie~yl  166 (172)
                      +++.|.+||
T Consensus       126 ~l~~Lk~~~  134 (136)
T cd08893         126 ILSSLKTLL  134 (136)
T ss_pred             HHHHHHHHh
Confidence            778888776

SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. Some proteins in this subgroup contain an N-terminal winged helix-turn-helix DNA-binding domain found in the GntR family of proteins which include bacterial transcriptional regulators and their putative homologs from eukaryota and archaea.

>cd08899 SRPBCC_CalC_Aha1-like_6 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins

Probab=98.23  E-value=2.5e-05  Score=60.55  Aligned_cols=125  Identities=11%  Similarity=0.099  Sum_probs=80.3

Q ss_pred             ceEEEEcCCHHHHHHHhhcCCcccCCcCCCCeeeEEEEecccCCCCcEEEEEeecCCCCCcccchhcccccccccccccc
Q 038195            2 ETEVEIKSPADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSAGDFPATRTEEQTQSSHLRGLHYQWS   81 (172)
Q Consensus         2 ~~e~~i~apa~kvw~~~~d~~~~lpk~~P~~v~sve~~eGd~g~~Gsvr~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~   81 (172)
                      +.+..|+||+++||+++.|.. .+++|.|. .      .++ -.+|....+.+...+.                      
T Consensus        14 ~~~~~i~Ap~e~Vw~altdp~-~~~~W~~~-~------~~~-~~~G~~~~~~~~~~~~----------------------   62 (157)
T cd08899          14 RFERLLPAPIEDVWAALTDPE-RLARWFAP-G------TGD-LRVGGRVEFVMDDEEG----------------------   62 (157)
T ss_pred             EEEEecCCCHHHHHHHHcCHH-HHHhhcCC-C------CCC-cccCceEEEEecCCCC----------------------
Confidence            567889999999999999985 78999994 2      233 2456555555433111                      


Q ss_pred             cceeeeeEEEEE-ecCCCceEEEEEEeCccccceeEEEEEEEEEecCCCcEEEEEEEEEecCCCCCChhhhhHHHHHHHH
Q 038195           82 QHFVEKMKEKVE-LDPENKTVAMVVIEGDLMKHFKSYKVIIKVIPKSEGSLVKWIWEYEKLQEDGPTPSKYVDFVTDLTK  160 (172)
Q Consensus        82 ~~~~~~~kEri~-~D~~~~~i~Y~vieGdl~~~~~s~~~t~~v~p~~dGs~v~w~~~ye~~~~~~~~p~~~~~~~~~~~k  160 (172)
                         . ...-++. +|+. +.+.|+...++     .....+++|++.++||.++.+..+.+..   .......+.-..++.
T Consensus        63 ---~-~~~~~v~e~~p~-~~l~~~~~~~~-----~~~~~~~~l~~~~~gT~v~~~~~~~~~~---~~~~~~~~GW~~~L~  129 (157)
T cd08899          63 ---P-NATGTILACEPP-RLLAFTWGEGG-----GESEVRFELAPEGDGTRLTLTHRLLDER---FGAGAVGAGWHLCLD  129 (157)
T ss_pred             ---C-ccceEEEEEcCC-cEEEEEecCCC-----CCceEEEEEEEcCCCEEEEEEEeccCch---hhhhhhcccHHHHHH
Confidence               0 1345666 6554 67788776554     1234577888887779888887776443   112233445666778


Q ss_pred             HHHHHHhhcc
Q 038195          161 NIDAHLLKEE  170 (172)
Q Consensus       161 ~ie~ylla~~  170 (172)
                      .|.+||-+.+
T Consensus       130 ~Lk~~~e~~~  139 (157)
T cd08899         130 VLEAALEGGP  139 (157)
T ss_pred             HHHHHHcCCC
Confidence            8888876543

SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.

>PF06240 COXG: Carbon monoxide dehydrogenase subunit G (CoxG); InterPro: IPR010419 The CO dehydrogenase structural genes coxMSL are flanked by nine accessory genes arranged as the cox gene cluster

Probab=98.21  E-value=8.3e-05  Score=56.82  Aligned_cols=131  Identities=16%  Similarity=0.228  Sum_probs=73.1

Q ss_pred             EEEEcCCHHHHHHHhhcCCcccCCcCCCCeeeEEEEecccCCCCcEEEEEeecCCCCCcccchhcccccccccccccccc
Q 038195            4 EVEIKSPADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSAGDFPATRTEEQTQSSHLRGLHYQWSQH   83 (172)
Q Consensus         4 e~~i~apa~kvw~~~~d~~~~lpk~~P~~v~sve~~eGd~g~~Gsvr~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~   83 (172)
                      +.+|++|++++|+++.|.. .+-..+|+ +++++.+. +. -.+.   ++...|.-  ..+                   
T Consensus         2 s~~v~a~~~~vw~~l~D~~-~l~~ciPG-~~~~e~~~-~~-~~~~---~~v~vG~i--~~~-------------------   53 (140)
T PF06240_consen    2 SFEVPAPPEKVWAFLSDPE-NLARCIPG-VESIEKVG-DE-YKGK---VKVKVGPI--KGT-------------------   53 (140)
T ss_dssp             EEEECS-HHHHHHHHT-HH-HHHHHSTT-EEEEEEEC-TE-EEEE---EEEESCCC--EEE-------------------
T ss_pred             cEEecCCHHHHHHHhcCHH-HHHhhCCC-cEEeeecC-cE-EEEE---EEEEeccE--EEE-------------------
Confidence            6789999999999999985 67789997 99998876 41 1122   22222322  110                   


Q ss_pred             eeeeeEEEEE-ecCCCceEEEEEEeCccccceeEEEEEEEEEecCCC-cEEEEEEEEEecCCCCC-Chhhh----hHHHH
Q 038195           84 FVEKMKEKVE-LDPENKTVAMVVIEGDLMKHFKSYKVIIKVIPKSEG-SLVKWIWEYEKLQEDGP-TPSKY----VDFVT  156 (172)
Q Consensus        84 ~~~~~kEri~-~D~~~~~i~Y~vieGdl~~~~~s~~~t~~v~p~~dG-s~v~w~~~ye~~~~~~~-~p~~~----~~~~~  156 (172)
                       + ..+=++. +|+.++.. ..+-..+... -.+..+.+++...+++ +.+.|..+++-.+-..- -..-+    ...+.
T Consensus        54 -~-~g~~~~~~~~~~~~~~-~~~~g~g~~~-~~~~~~~~~~~~~~~~~T~v~~~~~~~~~G~la~~g~~~i~~~~~~l~~  129 (140)
T PF06240_consen   54 -F-DGEVRITEIDPPESYT-LEFEGRGRGG-GSSASANITLSLEDDGGTRVTWSADVEVGGPLASLGQRLIESVARRLIE  129 (140)
T ss_dssp             -E-EEEEEEEEEETTTEEE-EEEEEEECTC-CEEEEEEEEEEECCCTCEEEEEEEEEEEECHHHHC-HHHHHHHHHHHHH
T ss_pred             -E-EEEEEEEEcCCCcceE-eeeeccCCcc-ceEEEEEEEEEcCCCCCcEEEEEEEEEEccCHHHhhHHHHHHHHHHHHH
Confidence             1 1233444 66666642 3333333322 2344555666665554 99999999998764211 11122    23455


Q ss_pred             HHHHHHHHHH
Q 038195          157 DLTKNIDAHL  166 (172)
Q Consensus       157 ~~~k~ie~yl  166 (172)
                      +++++|+..|
T Consensus       130 ~f~~~l~~~l  139 (140)
T PF06240_consen  130 QFFENLERKL  139 (140)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHhc
Confidence            5556665543

The cox genes are specifically and coordinately transcribed under chemolithoautotrophic conditions in the presence of CO as carbon and energy source [].; PDB: 2NS9_A 2PCS_A.

>cd08900 SRPBCC_CalC_Aha1-like_7 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins

Probab=98.17  E-value=0.00025  Score=53.66  Aligned_cols=135  Identities=15%  Similarity=0.132  Sum_probs=78.5

Q ss_pred             ceEEEEcCCHHHHHHHhhcCCcccCCcCCC-CeeeEEEEecccCCCCcEEEEEee-cCCCCCcccchhcccccccccccc
Q 038195            2 ETEVEIKSPADKFYNTFSSKAHTVPNMSPG-NLHGVEVHEGDWESHGSVKSWTFS-AGDFPATRTEEQTQSSHLRGLHYQ   79 (172)
Q Consensus         2 ~~e~~i~apa~kvw~~~~d~~~~lpk~~P~-~v~sve~~eGd~g~~Gsvr~~~~~-~gg~~~~~~~~~~~~~~~~~~~~~   79 (172)
                      +.+..++||+++||+++.+.. .+.+|+.. .--.+...+.| -.+|..-...+. .+|.                    
T Consensus         3 ~i~r~~~ap~e~Vw~a~tdp~-~l~~W~~~~~~~~~~~~~~d-~~~Gg~~~~~~~~~~g~--------------------   60 (143)
T cd08900           3 TLERTYPAPPERVFAAWSDPA-ARARWFVPSPDWTVLEDEFD-FRVGGREVSRGGPKGGP--------------------   60 (143)
T ss_pred             EEEEEeCCCHHHHHHHhcCHH-HHHhcCCCCCCCceeeeEEe-cCCCCEEEEEEECCCCC--------------------
Confidence            467789999999999999974 78899864 11223444445 244544444443 2333                    


Q ss_pred             cccceeeeeEEEEE-ecCCCceEEEEE--EeCccccceeEEEEEEEEEecCCCcEEEEEEEEEecCCCCCChhhhhHHHH
Q 038195           80 WSQHFVEKMKEKVE-LDPENKTVAMVV--IEGDLMKHFKSYKVIIKVIPKSEGSLVKWIWEYEKLQEDGPTPSKYVDFVT  156 (172)
Q Consensus        80 ~~~~~~~~~kEri~-~D~~~~~i~Y~v--ieGdl~~~~~s~~~t~~v~p~~dGs~v~w~~~ye~~~~~~~~p~~~~~~~~  156 (172)
                           .-...=++. +|+.+ ++.|+-  -.++-.  ......++.+.+.++||.++.+-.+-...+. .........-.
T Consensus        61 -----~~~~~g~~~~~~p~~-~l~~t~~~~~~~~~--~~~s~v~~~l~~~~~gT~l~~~~~~~~~~~~-~~~~~~~~GW~  131 (143)
T cd08900          61 -----EITVEARYHDIVPDE-RIVYTYTMHIGGTL--LSASLATVEFAPEGGGTRLTLTEQGAFLDGD-DDPAGREQGTA  131 (143)
T ss_pred             -----EEeeeEEEEEecCCc-eEEEEEeeccCCcc--ccceEEEEEEEECCCCEEEEEEEEEeccccc-chhhhHHHHHH
Confidence                 112234555 76544 455553  223321  1223478899998878988887765332221 11233445667


Q ss_pred             HHHHHHHHHHh
Q 038195          157 DLTKNIDAHLL  167 (172)
Q Consensus       157 ~~~k~ie~yll  167 (172)
                      .++..|++||-
T Consensus       132 ~~l~~L~~~l~  142 (143)
T cd08900         132 ALLDNLAAELE  142 (143)
T ss_pred             HHHHHHHHHHh
Confidence            77888888874

SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.

>cd08894 SRPBCC_CalC_Aha1-like_1 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins

Probab=98.11  E-value=7.5e-05  Score=56.42  Aligned_cols=133  Identities=11%  Similarity=0.117  Sum_probs=74.6

Q ss_pred             CceEEEEcCCHHHHHHHhhcCCcccCCcCC-CCeeeEEEEecccCCCCcEEEEEe-ecCCCCCcccchhccccccccccc
Q 038195            1 METEVEIKSPADKFYNTFSSKAHTVPNMSP-GNLHGVEVHEGDWESHGSVKSWTF-SAGDFPATRTEEQTQSSHLRGLHY   78 (172)
Q Consensus         1 ~~~e~~i~apa~kvw~~~~d~~~~lpk~~P-~~v~sve~~eGd~g~~Gsvr~~~~-~~gg~~~~~~~~~~~~~~~~~~~~   78 (172)
                      ++.+..|+||+++||+++.+.. .+.+|++ +.+. +...+.| -.+|..-.+.+ ..+|.                   
T Consensus         2 l~~~r~i~ap~e~Vw~a~t~p~-~l~~W~~p~~~~-~~~~~~d-~~~GG~~~~~~~~~~g~-------------------   59 (139)
T cd08894           2 IVTTRVIDAPRDLVFAAWTDPE-HLAQWWGPEGFT-NTTHEFD-LRPGGRWRFVMHGPDGT-------------------   59 (139)
T ss_pred             EEEEEEeCCCHHHHHHHhCCHH-HHhhccCcCCCc-ceEEEEE-ecCCCEEEEEEECCCCC-------------------
Confidence            4567899999999999999974 7888874 2222 2222334 23444433333 22332                   


Q ss_pred             ccccceeeeeEEEEE-ecCCCceEEEEEEeCccccceeEEEEEEEEEecCCCcEEEEEEEEEecCCCC-CChhhhhHHHH
Q 038195           79 QWSQHFVEKMKEKVE-LDPENKTVAMVVIEGDLMKHFKSYKVIIKVIPKSEGSLVKWIWEYEKLQEDG-PTPSKYVDFVT  156 (172)
Q Consensus        79 ~~~~~~~~~~kEri~-~D~~~~~i~Y~vieGdl~~~~~s~~~t~~v~p~~dGs~v~w~~~ye~~~~~~-~~p~~~~~~~~  156 (172)
                            .-...-++. +++. +.|.|+...++.     ....+++|+|.++||.++.+-.|....... .......+...
T Consensus        60 ------~~~~~g~v~e~~p~-~~l~~t~~~~~~-----~~~v~~~~~~~~~gT~ltl~~~~~~~~~~~~~~~~~~~~Gw~  127 (139)
T cd08894          60 ------DYPNRIVFLEIEPP-ERIVYDHGSGPP-----RFRLTVTFEEQGGKTRLTWRQVFPTAAERCEKIKFGAVEGNE  127 (139)
T ss_pred             ------EecceEEEEEEcCC-CEEEEEeccCCC-----cEEEEEEEEECCCCEEEEEEEEcCCHHHHHHHHHhCHHHHHH
Confidence                  111233555 7554 457777643321     245788999988779888886542110000 00011223566


Q ss_pred             HHHHHHHHHHh
Q 038195          157 DLTKNIDAHLL  167 (172)
Q Consensus       157 ~~~k~ie~yll  167 (172)
                      .++..|++||.
T Consensus       128 ~~l~~L~~~l~  138 (139)
T cd08894         128 QTLDRLAAYLA  138 (139)
T ss_pred             HHHHHHHHHHh
Confidence            77888888874

SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.

>cd08896 SRPBCC_CalC_Aha1-like_3 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins

Probab=98.10  E-value=8.7e-05  Score=56.50  Aligned_cols=135  Identities=10%  Similarity=-0.017  Sum_probs=74.7

Q ss_pred             CceEEEEcCCHHHHHHHhhcCCcccCCcCCCCeeeEEEEecccCCCCcEEEEEee-cCCCCCcccchhcccccccccccc
Q 038195            1 METEVEIKSPADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFS-AGDFPATRTEEQTQSSHLRGLHYQ   79 (172)
Q Consensus         1 ~~~e~~i~apa~kvw~~~~d~~~~lpk~~P~~v~sve~~eGd~g~~Gsvr~~~~~-~gg~~~~~~~~~~~~~~~~~~~~~   79 (172)
                      +..+..|+||+++||+++.+.. .+.+|++..=-++...+.|. .+|..-++.+. .+|.                    
T Consensus         2 l~i~r~i~a~~e~Vw~a~t~pe-~~~~W~~p~~~~~~~~~~d~-~~GG~~~~~~~~~~g~--------------------   59 (146)
T cd08896           2 LVLSRTIDAPRELVWRAWTEPE-LLKQWFCPKPWTTEVAELDL-RPGGAFRTVMRGPDGE--------------------   59 (146)
T ss_pred             eEEEEEeCCCHHHHHHHcCCHH-HHhccCCCCCccceEEEEEe-ecCcEEEEEEECCCCC--------------------
Confidence            3567889999999999999874 77889864201122233442 34443344442 2232                    


Q ss_pred             cccceeeeeEEEEE-ecCCCceEEEE--EEeCccccceeEEEEEEEEEecCCCcEEEEEEEEEecCCCCCChhh-----h
Q 038195           80 WSQHFVEKMKEKVE-LDPENKTVAMV--VIEGDLMKHFKSYKVIIKVIPKSEGSLVKWIWEYEKLQEDGPTPSK-----Y  151 (172)
Q Consensus        80 ~~~~~~~~~kEri~-~D~~~~~i~Y~--vieGdl~~~~~s~~~t~~v~p~~dGs~v~w~~~ye~~~~~~~~p~~-----~  151 (172)
                           .-...-++. +|+.+ ++.|+  +.++.....-.....+++++|.++||.++.+..+....    ..+.     .
T Consensus        60 -----~~~~~g~v~~i~p~~-~l~~t~~~~~~~~~~~~~~~~v~~~~~~~~~gT~Ltl~~~~~~~~----~~~~~~~~~~  129 (146)
T cd08896          60 -----EFPNPGCFLEVVPGE-RLVFTDALTPGWRPAEKPFMTAIITFEDEGGGTRYTARARHWTEA----DRKQHEEMGF  129 (146)
T ss_pred             -----EecceEEEEEEeCCC-EEEEEEeecCCcCCCCCCcEEEEEEEEecCCcEEEEEEEEeCCHH----HHHHHHHcCH
Confidence                 111234466 76654 34444  33321111111145688999988889888765432110    0111     1


Q ss_pred             hHHHHHHHHHHHHHHh
Q 038195          152 VDFVTDLTKNIDAHLL  167 (172)
Q Consensus       152 ~~~~~~~~k~ie~yll  167 (172)
                      .+.-..++..|++||.
T Consensus       130 ~~GW~~~l~~L~~~l~  145 (146)
T cd08896         130 HDGWGTAADQLAALAE  145 (146)
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            3456778888998875

SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.

>cd08895 SRPBCC_CalC_Aha1-like_2 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins

Probab=98.09  E-value=0.00035  Score=53.15  Aligned_cols=140  Identities=16%  Similarity=0.121  Sum_probs=78.5

Q ss_pred             ceEEEEcCCHHHHHHHhhcCCcccCCcCCCCeeeEEEEecccCCCCcEEEEEeecCCCCCcccchhcccccccccccccc
Q 038195            2 ETEVEIKSPADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSAGDFPATRTEEQTQSSHLRGLHYQWS   81 (172)
Q Consensus         2 ~~e~~i~apa~kvw~~~~d~~~~lpk~~P~~v~sve~~eGd~g~~Gsvr~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~   81 (172)
                      +.+..|+||+++||+++.|.. .+.+|.+..=-.+.+...| -.+|-.-.+.+.....+. .   +.++.          
T Consensus         3 ~~~r~i~ap~e~Vw~a~td~~-~~~~W~~p~~~~~~~~~~d-~~~GG~~~~~~~~~~~~~-g---~~~g~----------   66 (146)
T cd08895           3 RLHRVIAAPPERVYRAFLDPD-ALAKWLPPDGMTGTVHEFD-AREGGGFRMSLTYFDPSV-G---KTTGN----------   66 (146)
T ss_pred             EEEEEECCCHHHHHHHHcCHH-HHhhcCCCCCeEeEEEEEe-cccCCeEEEEEEcCCccc-c---ccCCc----------
Confidence            567889999999999999985 7889886321122333344 234444344332221100 0   00000          


Q ss_pred             cceeeeeEEEEE-ecCCCceEEEEEEeC--ccccceeEEEEEEEEEecCCCcEEEEEEEEEecCCCCCChhhhhHHHHHH
Q 038195           82 QHFVEKMKEKVE-LDPENKTVAMVVIEG--DLMKHFKSYKVIIKVIPKSEGSLVKWIWEYEKLQEDGPTPSKYVDFVTDL  158 (172)
Q Consensus        82 ~~~~~~~kEri~-~D~~~~~i~Y~vieG--dl~~~~~s~~~t~~v~p~~dGs~v~w~~~ye~~~~~~~~p~~~~~~~~~~  158 (172)
                         .....-++. +++.+ .|.|+..-.  +..   .....++.+++.++||.++++...-+..   .......+.-..+
T Consensus        67 ---~~~~~g~v~~v~p~~-~i~~~~~~~~~~~~---~~~~v~~~~~~~~~~T~lt~~~~~~~~~---~~~~~~~~GW~~~  136 (146)
T cd08895          67 ---TDVFGGRFLELVPNE-RIVYTDVFDDPSLS---GEMTMTWTLSPVSGGTDVTIVQSGIPDG---IPPEDCELGWQES  136 (146)
T ss_pred             ---EeeeEEEEEEEcCCC-EEEEEEEecCCCCC---ceEEEEEEEEecCCCEEEEEEEeCCCch---hhhhHHHHHHHHH
Confidence               111233555 76654 466654322  221   2346889999988779888877642211   1233445677788


Q ss_pred             HHHHHHHHh
Q 038195          159 TKNIDAHLL  167 (172)
Q Consensus       159 ~k~ie~yll  167 (172)
                      +..|++||-
T Consensus       137 l~~L~~~le  145 (146)
T cd08895         137 LANLAALVE  145 (146)
T ss_pred             HHHHHHHhc
Confidence            889998874

SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.

>cd08898 SRPBCC_CalC_Aha1-like_5 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins

Probab=98.08  E-value=8.1e-05  Score=55.47  Aligned_cols=133  Identities=14%  Similarity=0.099  Sum_probs=74.7

Q ss_pred             CceEEEEcCCHHHHHHHhhcCCcccCCcCCCCeeeEEEEecccCCCCcEEEEEeecCCCCCcccchhccccccccccccc
Q 038195            1 METEVEIKSPADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSAGDFPATRTEEQTQSSHLRGLHYQW   80 (172)
Q Consensus         1 ~~~e~~i~apa~kvw~~~~d~~~~lpk~~P~~v~sve~~eGd~g~~Gsvr~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~   80 (172)
                      ++.++.|+||+++||+++.+.. .+++|+|...  ....-|.    |..-.+++. +..                     
T Consensus         3 i~~~i~i~a~~e~Vw~~~td~~-~~~~W~~~~~--~~~~~~~----~~~g~~~~~-~~~---------------------   53 (145)
T cd08898           3 IERTILIDAPRERVWRALTDPE-HFGQWFGVKL--GPFVVGE----GATGEITYP-GYE---------------------   53 (145)
T ss_pred             eEEEEEecCCHHHHHHHhcChh-hhhhcccccC--CCcccCC----cceeEEecC-CCC---------------------
Confidence            4678999999999999999985 7899999632  1111121    111223332 111                     


Q ss_pred             ccceeeeeEEEEE-ecCCCceEEEEEEeCc----ccc-ceeEEEEEEEEEecCCCcEEEEEEE-EEecCCCCC--Chhhh
Q 038195           81 SQHFVEKMKEKVE-LDPENKTVAMVVIEGD----LMK-HFKSYKVIIKVIPKSEGSLVKWIWE-YEKLQEDGP--TPSKY  151 (172)
Q Consensus        81 ~~~~~~~~kEri~-~D~~~~~i~Y~vieGd----l~~-~~~s~~~t~~v~p~~dGs~v~w~~~-ye~~~~~~~--~p~~~  151 (172)
                          .-...-++. ++ .++.+.|+...+.    ... .-.....+++|++.++||.++++-. |...++...  .....
T Consensus        54 ----~~~~~~~i~~~~-p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gT~vt~~~~~~~~~~~~~~~~~~~~~  128 (145)
T cd08898          54 ----HGVFPVTVVEVD-PPRRFSFRWHPPAIDPGEDYSAEPSTLVEFTLEPIAGGTLLTVTESGFDALPAERRAEAYRMN  128 (145)
T ss_pred             ----ccceEEEEEEeC-CCcEEEEEecCCCcccccccCCCCceEEEEEEEecCCcEEEEEEEcCCCCCChHHHHHHHHhh
Confidence                001234555 54 4455677754332    100 1123447889999988899999876 332211100  11122


Q ss_pred             hHHHHHHHHHHHHHHh
Q 038195          152 VDFVTDLTKNIDAHLL  167 (172)
Q Consensus       152 ~~~~~~~~k~ie~yll  167 (172)
                      .+.-..++..|++||-
T Consensus       129 ~~gw~~~l~~L~~~le  144 (145)
T cd08898         129 EGGWDEQLENLVAYVE  144 (145)
T ss_pred             hhhHHHHHHHHHHHhc
Confidence            3456677788888874

SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.

>cd08897 SRPBCC_CalC_Aha1-like_4 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins

Probab=98.00  E-value=0.00033  Score=52.47  Aligned_cols=127  Identities=12%  Similarity=0.187  Sum_probs=75.4

Q ss_pred             CceEEEEcCCHHHHHHHhhcCCcccCCcCCCCeee--EEEEecccCCCCcEEEEEee-cCCCCCcccchhcccccccccc
Q 038195            1 METEVEIKSPADKFYNTFSSKAHTVPNMSPGNLHG--VEVHEGDWESHGSVKSWTFS-AGDFPATRTEEQTQSSHLRGLH   77 (172)
Q Consensus         1 ~~~e~~i~apa~kvw~~~~d~~~~lpk~~P~~v~s--ve~~eGd~g~~Gsvr~~~~~-~gg~~~~~~~~~~~~~~~~~~~   77 (172)
                      ++.++.++||+++||+++.+.. .+.+|++. ...  +...+.|. .+|..-.+.+. .++..                 
T Consensus         2 ~~~~~~~~ap~e~Vw~a~td~e-~~~~W~~~-~~~~~~~~~~~d~-~~GG~~~~~~~~~~g~~-----------------   61 (133)
T cd08897           2 ITVETTVDAPIEKVWEAWTTPE-HITKWNFA-SDDWHCPSAENDL-RVGGKFSYRMEAKDGSM-----------------   61 (133)
T ss_pred             EEEEEEeCCCHHHHHHHhCCHH-HHhhCCCC-CCCcccceeeecC-CcCCEEEEEEEcCCCCc-----------------
Confidence            3568899999999999999974 78999653 111  22233453 45655444442 22220                 


Q ss_pred             cccccceeeeeEEEEE-ecCCCceEEEEEEeCccccceeEEEEEEEEEecCCCcEEEEEEEEEecCCCCCChhhhhHHHH
Q 038195           78 YQWSQHFVEKMKEKVE-LDPENKTVAMVVIEGDLMKHFKSYKVIIKVIPKSEGSLVKWIWEYEKLQEDGPTPSKYVDFVT  156 (172)
Q Consensus        78 ~~~~~~~~~~~kEri~-~D~~~~~i~Y~vieGdl~~~~~s~~~t~~v~p~~dGs~v~w~~~ye~~~~~~~~p~~~~~~~~  156 (172)
                             .-.+.-++. +++ ++++.|+...|        ...+++++|.++||.++.+  +.....  ...+.....-.
T Consensus        62 -------~~~~~g~~~ei~p-~~~l~~~~~~~--------~~v~~~l~~~~~gT~l~l~--~~~~~~--~~~~~~~~GW~  121 (133)
T cd08897          62 -------GFDFEGTYTEVEP-HKLIEYTMEDG--------REVEVEFTEEGDGTKVVET--FDAENE--NPVEMQRQGWQ  121 (133)
T ss_pred             -------ccccceEEEEECC-CCEEEEEcCCC--------CEEEEEEEECCCCEEEEEE--ECCCCC--CcHHHHHHHHH
Confidence                   001123344 544 45677775322        2468899998877887765  333221  12333445667


Q ss_pred             HHHHHHHHHHh
Q 038195          157 DLTKNIDAHLL  167 (172)
Q Consensus       157 ~~~k~ie~yll  167 (172)
                      .++..|++||-
T Consensus       122 ~~l~~L~~~le  132 (133)
T cd08897         122 AILDNFKKYVE  132 (133)
T ss_pred             HHHHHHHHHhh
Confidence            78888998884

SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.

>cd07826 SRPBCC_CalC_Aha1-like_9 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins

Probab=97.99  E-value=0.00021  Score=54.37  Aligned_cols=138  Identities=9%  Similarity=0.024  Sum_probs=78.6

Q ss_pred             CceEEEEcCCHHHHHHHhhcCCcccCCcCCCCeeeEEEEecccCCCCcEEEEEee-cCCCCCcccchhcccccccccccc
Q 038195            1 METEVEIKSPADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFS-AGDFPATRTEEQTQSSHLRGLHYQ   79 (172)
Q Consensus         1 ~~~e~~i~apa~kvw~~~~d~~~~lpk~~P~~v~sve~~eGd~g~~Gsvr~~~~~-~gg~~~~~~~~~~~~~~~~~~~~~   79 (172)
                      ++.+..++||+++||+++.+.. .+.+|+...--.+...+.|. .+|..-.+.+. .+|.                    
T Consensus         2 l~i~r~~~ap~e~Vw~a~Tdpe-~l~~W~~p~~~~~~~~~~d~-r~GG~~~~~~~~~~g~--------------------   59 (142)
T cd07826           2 IVITREFDAPRELVFRAHTDPE-LVKRWWGPRGLTMTVCECDI-RVGGSYRYVHRAPDGE--------------------   59 (142)
T ss_pred             EEEEEEECCCHHHHHHHhCCHH-HHhhccCCCCCcceEEEEec-cCCCEEEEEEECCCCC--------------------
Confidence            3567889999999999999974 78889876423344455663 45555444443 2232                    


Q ss_pred             cccceeeeeEEEEE-ecCCCceEEEEEEeCccccceeEEEEEEEEEecCCCcEEEEEEEEEecCCCC-CChhhhhHHHHH
Q 038195           80 WSQHFVEKMKEKVE-LDPENKTVAMVVIEGDLMKHFKSYKVIIKVIPKSEGSLVKWIWEYEKLQEDG-PTPSKYVDFVTD  157 (172)
Q Consensus        80 ~~~~~~~~~kEri~-~D~~~~~i~Y~vieGdl~~~~~s~~~t~~v~p~~dGs~v~w~~~ye~~~~~~-~~p~~~~~~~~~  157 (172)
                           .-.+.-.+. +++.. .+.|+---.+...  .....++.+.+.++||.++.+..+....... .......+.-..
T Consensus        60 -----~~~~~g~~~ei~p~~-~l~~t~~~~~~~~--~~s~v~~~l~~~~~gT~l~l~~~~~~~~~~~~~~~~~~~~Gw~~  131 (142)
T cd07826          60 -----EMGFHGVYHEVTPPE-RIVQTEEFEGLPD--GVALETVTFTELGGRTRLTATSRYPSKEARDGVLASGMEEGMEE  131 (142)
T ss_pred             -----EecceEEEEEEcCCC-EEEEEeEecCCCC--CceEEEEEEEECCCCEEEEEEEEeCCHHHHHHHHHhhHHHHHHH
Confidence                 111233455 66543 3444432122211  2245688999988779888875553211000 011122346677


Q ss_pred             HHHHHHHHHhh
Q 038195          158 LTKNIDAHLLK  168 (172)
Q Consensus       158 ~~k~ie~ylla  168 (172)
                      .+..|++||.+
T Consensus       132 ~l~~L~~~l~~  142 (142)
T cd07826         132 SYDRLDELLAS  142 (142)
T ss_pred             HHHHHHHHHhC
Confidence            88899998853

SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.

>COG2867 Oligoketide cyclase/lipid transport protein [Lipid metabolism]

Probab=97.96  E-value=3.5e-05  Score=60.44  Aligned_cols=108  Identities=17%  Similarity=0.274  Sum_probs=80.3

Q ss_pred             ceEEEEcCCHHHHHHHhhcCCcccCCcCCCCeeeEEEEecccCCCCcEEEEEeecCCCCCcccchhcccccccccccccc
Q 038195            2 ETEVEIKSPADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSAGDFPATRTEEQTQSSHLRGLHYQWS   81 (172)
Q Consensus         2 ~~e~~i~apa~kvw~~~~d~~~~lpk~~P~~v~sve~~eGd~g~~Gsvr~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~   81 (172)
                      +...-+..+|+++|+++.|-. ..|+++|- -...++.+.+.  ..-+-.++.+-.|-                      
T Consensus         5 ~~s~lv~y~a~~mF~LV~dV~-~YP~FlP~-C~~s~v~~~~~--~~l~A~l~V~~k~i----------------------   58 (146)
T COG2867           5 ERTALVPYSASQMFDLVNDVE-SYPEFLPW-CSASRVLERNE--RELIAELDVGFKGI----------------------   58 (146)
T ss_pred             EeeeeccCCHHHHHHHHHHHH-hCchhccc-cccceEeccCc--ceeEEEEEEEhhhe----------------------
Confidence            345667899999999999984 89999996 66667788763  33444454433332                      


Q ss_pred             cceeeeeEEEEEecCCCceEEEEEEeCccccceeEEEEEEEEEec-CCCcEEEEEEEEEecC
Q 038195           82 QHFVEKMKEKVELDPENKTVAMVVIEGDLMKHFKSYKVIIKVIPK-SEGSLVKWIWEYEKLQ  142 (172)
Q Consensus        82 ~~~~~~~kEri~~D~~~~~i~Y~vieGdl~~~~~s~~~t~~v~p~-~dGs~v~w~~~ye~~~  142 (172)
                         -++..-++..++..++|..++++|..    +...++|+|+|- +++|.|+..++||...
T Consensus        59 ---~e~F~Trv~~~~~~~~I~~~l~~GPF----k~L~~~W~F~pl~~~~ckV~f~ldfeF~s  113 (146)
T COG2867          59 ---RETFTTRVTLKPTARSIDMKLIDGPF----KYLKGGWQFTPLSEDACKVEFFLDFEFKS  113 (146)
T ss_pred             ---eeeeeeeeeecCchhhhhhhhhcCCh----hhhcCceEEEECCCCceEEEEEEEeeehh
Confidence               34456666766666688888888765    667889999995 4559999999999886

>COG5637 Predicted integral membrane protein [Function unknown]

Probab=97.88  E-value=4.5e-05  Score=62.07  Aligned_cols=105  Identities=18%  Similarity=0.329  Sum_probs=80.4

Q ss_pred             CceEEEEcCCHHHHHHHhhcCCcccCCcCCCCeeeEEEEecccCCCCcEEEEEeec-CCCCCcccchhcccccccccccc
Q 038195            1 METEVEIKSPADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSA-GDFPATRTEEQTQSSHLRGLHYQ   79 (172)
Q Consensus         1 ~~~e~~i~apa~kvw~~~~d~~~~lpk~~P~~v~sve~~eGd~g~~Gsvr~~~~~~-gg~~~~~~~~~~~~~~~~~~~~~   79 (172)
                      ++.+++|++|++.+|..++|.. .+|.||-+ +.||++.+-+   +   .+|+.+. +|                 +.+-
T Consensus        72 v~~~V~I~kPae~vy~~W~dLe-~lP~~Mkh-l~SVkVlddk---r---SrW~~~ap~g-----------------~~v~  126 (217)
T COG5637          72 VEVQVTIDKPAEQVYAYWRDLE-NLPLWMKH-LDSVKVLDDK---R---SRWKANAPLG-----------------LEVE  126 (217)
T ss_pred             EEEEEEeCChHHHHHHHHHhhh-hhhHHHHh-hceeeccCCC---c---cceeEcCCCC-----------------ceEE
Confidence            3578999999999999999985 79999996 9999998644   1   4666654 22                 2344


Q ss_pred             cccceeeeeEEEEEecCCCceEEEEEEeCc-cccceeEEEEEEEEEecCCC-cEEEEEEEEEecCC
Q 038195           80 WSQHFVEKMKEKVELDPENKTVAMVVIEGD-LMKHFKSYKVIIKVIPKSEG-SLVKWIWEYEKLQE  143 (172)
Q Consensus        80 ~~~~~~~~~kEri~~D~~~~~i~Y~vieGd-l~~~~~s~~~t~~v~p~~dG-s~v~w~~~ye~~~~  143 (172)
                      |        .-+|.-|..+..|.+.=++|. +..     +..+.|.+.++. +.|+.++.|.+-+.
T Consensus       127 W--------ea~it~d~~~e~I~W~Sl~Ga~v~N-----sG~VrF~~~pg~~t~V~v~lsY~~Pgg  179 (217)
T COG5637         127 W--------EAEITKDIPGERIQWESLPGARVEN-----SGAVRFYDAPGDSTEVKVTLSYRPPGG  179 (217)
T ss_pred             E--------eehhhccCCCcEEeeecCCCCcCCC-----CccEEeeeCCCCceEEEEEEEecCCcc
Confidence            4        344557899999999999996 532     245678887776 79999999987664

>cd08891 SRPBCC_CalC Ligand-binding SRPBCC domain of Micromonospora echinospora CalC and related proteins

Probab=97.80  E-value=0.001  Score=50.80  Aligned_cols=131  Identities=14%  Similarity=0.073  Sum_probs=69.7

Q ss_pred             CceEEEEcCCHHHHHHHhhcCCcccCCcCCCCe-------eeEEEEecccCCCCcEEEEEeecCCCCCcccchhcccccc
Q 038195            1 METEVEIKSPADKFYNTFSSKAHTVPNMSPGNL-------HGVEVHEGDWESHGSVKSWTFSAGDFPATRTEEQTQSSHL   73 (172)
Q Consensus         1 ~~~e~~i~apa~kvw~~~~d~~~~lpk~~P~~v-------~sve~~eGd~g~~Gsvr~~~~~~gg~~~~~~~~~~~~~~~   73 (172)
                      ++.++.|+||+++||+++.+   .+.+|++..-       ..|++--    .+|..... ...+|.              
T Consensus         2 ~~~~~~i~Ap~e~Vw~a~t~---~l~~W~~p~~~~~~~~~~~~~~d~----~~GG~~~~-~~~~g~--------------   59 (149)
T cd08891           2 VRKSVTVPAPPERAFEVFTE---GFGAWWPPEYHFVFSPGAEVVFEP----RAGGRWYE-IGEDGT--------------   59 (149)
T ss_pred             eEEEEEecCCHHHHHHHHHh---chhhccCCCcccccCCCccEEEcc----cCCcEEEE-ecCCCc--------------
Confidence            46789999999999999997   3667765311       2222211    12221111 111222              


Q ss_pred             cccccccccceeeeeEEEEE-ecCCCceEEEEEE-eCcc--ccceeEEEEEEEEEecC-CCcEEEEEEEEEecCCC-CCC
Q 038195           74 RGLHYQWSQHFVEKMKEKVE-LDPENKTVAMVVI-EGDL--MKHFKSYKVIIKVIPKS-EGSLVKWIWEYEKLQED-GPT  147 (172)
Q Consensus        74 ~~~~~~~~~~~~~~~kEri~-~D~~~~~i~Y~vi-eGdl--~~~~~s~~~t~~v~p~~-dGs~v~w~~~ye~~~~~-~~~  147 (172)
                                  .+..=++. +++.+ .+.|+-. ..+.  .... .-..+++++|.+ +||.++.+-.+...... ...
T Consensus        60 ------------~~~~g~v~~v~p~~-~l~~tw~~~~~~~~~~~~-~t~vt~~l~~~~~~gT~ltl~~~~~~~~~~~~~~  125 (149)
T cd08891          60 ------------ECEWGTVLAWEPPS-RLVFTWQINADWRPDPDK-ASEVEVRFEAVGAEGTRVELEHRGFERHGDGWEA  125 (149)
T ss_pred             ------------EeceEEEEEEcCCC-EEEEEeccCCCcCcCCCC-ceEEEEEEEECCCCCeEEEEEEecccccCcchhh
Confidence                        11223455 76554 3555543 1111  1111 235789999988 77988887776543211 011


Q ss_pred             ---hhhhhHHHHHHHHHHHHHHh
Q 038195          148 ---PSKYVDFVTDLTKNIDAHLL  167 (172)
Q Consensus       148 ---p~~~~~~~~~~~k~ie~yll  167 (172)
                         .....+.-..++..|++||-
T Consensus       126 ~~~~~~~~~GW~~~L~~L~~~l~  148 (149)
T cd08891         126 AAMRMGYDGGWPLLLERYAAAAE  148 (149)
T ss_pred             HHHHhcccCcHHHHHHHHHHHhc
Confidence               11223355667788888873

This subfamily includes Micromonospora echinospora CalC (MeCalC) and related proteins. These proteins belong to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM). Enediyne antibiotics are antitumor agents. Enediynes have an in vitro and in vivo role as DNA damaging agents; they consist of a DNA recognition unit (e.g., aryltetrasaccharide of CLM), an activating component (e.g., methyl trisulfide of CLM), which promotes cycloaromatization, and the enediyne warhead which cycloaromatizes to a reactive diradical species, resulting in oxidative strand cleavage of the targeted DNA sequence. MeCalC confers resistance to CLM by a self sacrificing mechanism: the transient enediyne diradical speci

>cd08876 START_1 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family

Probab=97.71  E-value=0.0042  Score=49.25  Aligned_cols=117  Identities=11%  Similarity=0.076  Sum_probs=72.0

Q ss_pred             ceEEEEcCCHHHHHHHhhcCCcccCCcCCCCeeeEEEEecccCCCCcEEEEEeecCCCCCcccchhcccccccccccccc
Q 038195            2 ETEVEIKSPADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSAGDFPATRTEEQTQSSHLRGLHYQWS   81 (172)
Q Consensus         2 ~~e~~i~apa~kvw~~~~d~~~~lpk~~P~~v~sve~~eGd~g~~Gsvr~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~   81 (172)
                      .++..|++||+.+|+++.|.. ..|+|.|. +.++++++-.+ .--.+-...+....+ .                  -.
T Consensus        44 k~~~~i~~s~e~v~~vi~d~e-~~~~w~~~-~~~~~vie~~~-~~~~i~~~~~~~p~p-v------------------s~  101 (195)
T cd08876          44 KAVAEVDASIEAFLALLRDTE-SYPQWMPN-CKESRVLKRTD-DNERSVYTVIDLPWP-V------------------KD  101 (195)
T ss_pred             EEEEEEeCCHHHHHHHHhhhH-hHHHHHhh-cceEEEeecCC-CCcEEEEEEEecccc-c------------------CC
Confidence            457789999999999999984 78999995 99999998652 112333333332211 0                  01


Q ss_pred             cceeeeeEE-EEEecCCCceEEEEEEeCcc--c--cc---eeEEEEEEEEEecCCC-cEEEEEEEEEecCC
Q 038195           82 QHFVEKMKE-KVELDPENKTVAMVVIEGDL--M--KH---FKSYKVIIKVIPKSEG-SLVKWIWEYEKLQE  143 (172)
Q Consensus        82 ~~~~~~~kE-ri~~D~~~~~i~Y~vieGdl--~--~~---~~s~~~t~~v~p~~dG-s~v~w~~~ye~~~~  143 (172)
                      |+   ++.. +...+.++..+...+..++-  +  ..   ...+.+.+.++|.++| |.+++...+++.+.
T Consensus       102 Rd---fv~~~~~~~~~~~~~~~i~~~s~~~~~P~~~~~vR~~~~~~~~~i~~~~~~~t~vt~~~~~dp~g~  169 (195)
T cd08876         102 RD---MVLRSTTEQDADDGSVTITLEAAPEALPEQKGYVRIKTVEGQWTFTPLGNGKTRVTYQAYADPGGS  169 (195)
T ss_pred             ce---EEEEEEEEEcCCCCEEEEEeecCCccCCCCCCeEEceeceeeEEEEECCCCeEEEEEEEEeCCCCC
Confidence            12   1221 12232223444444443321  1  11   4567778899998877 99999999988763

Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a

>cd08892 SRPBCC_Aha1 Putative hydrophobic ligand-binding SRPBCC domain of the Hsp90 co-chaperone Aha1 and related proteins

Probab=97.43  E-value=0.0036  Score=46.66  Aligned_cols=121  Identities=12%  Similarity=0.121  Sum_probs=67.6

Q ss_pred             CceEEEEcCCHHHHHHHhhcCCcccCCcCCCCeeeEEEEecccCCCCcEEEEEeecCCCCCcccchhccccccccccccc
Q 038195            1 METEVEIKSPADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSAGDFPATRTEEQTQSSHLRGLHYQW   80 (172)
Q Consensus         1 ~~~e~~i~apa~kvw~~~~d~~~~lpk~~P~~v~sve~~eGd~g~~Gsvr~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~   80 (172)
                      ++.+..++||+++||+++.+.. .+.+|+.. ..+.+...|     |..   .+.. |.                     
T Consensus         2 i~~~r~i~ap~e~Vw~A~T~~e-~l~~W~~~-~~~~d~~~G-----G~~---~~~~-g~---------------------   49 (126)
T cd08892           2 ISLTETFQVPAEELYEALTDEE-RVQAFTRS-PAKVDAKVG-----GKF---SLFG-GN---------------------   49 (126)
T ss_pred             eEEEEEECCCHHHHHHHHCCHH-HHHhhcCC-CceecCCCC-----CEE---EEeC-Cc---------------------
Confidence            3567889999999999999974 77889864 334443333     222   2222 22                     


Q ss_pred             ccceeeeeEEEEE-ecCCCceEEEEEEeCccccceeEEEEEEEEEecCCCcEEEEEEEEEecCCCCCChhhhhHHHH-HH
Q 038195           81 SQHFVEKMKEKVE-LDPENKTVAMVVIEGDLMKHFKSYKVIIKVIPKSEGSLVKWIWEYEKLQEDGPTPSKYVDFVT-DL  158 (172)
Q Consensus        81 ~~~~~~~~kEri~-~D~~~~~i~Y~vieGdl~~~~~s~~~t~~v~p~~dGs~v~w~~~ye~~~~~~~~p~~~~~~~~-~~  158 (172)
                             +.-++. +++. +.+.|+---.+.... ..-..++.+++.++||.++.+-...+..    ..+...+.-. .+
T Consensus        50 -------~~g~~~~i~p~-~~l~~~w~~~~~~~~-~~s~v~~~l~~~~~gT~ltl~~~g~~~~----~~~~~~~GW~~~~  116 (126)
T cd08892          50 -------ITGEFVELVPG-KKIVQKWRFKSWPEG-HYSTVTLTFTEKDDETELKLTQTGVPAG----EEERTREGWERYY  116 (126)
T ss_pred             -------eEEEEEEEcCC-CEEEEEEEcCCCCCC-CcEEEEEEEEECCCCEEEEEEEECCCCc----hHHHHHhhHHHHH
Confidence                   223444 6543 344444332222111 2245788999987778777666644322    2233333333 36


Q ss_pred             HHHHHHHH
Q 038195          159 TKNIDAHL  166 (172)
Q Consensus       159 ~k~ie~yl  166 (172)
                      +..|.++|
T Consensus       117 ~~~l~~~~  124 (126)
T cd08892         117 FESIKQTF  124 (126)
T ss_pred             HHHHHHHh
Confidence            67777665

This subfamily includes the C-terminal SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Aha1, and related domains. Proteins in this group belong to the SRPBCC domain superfamily of proteins which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Aha1 is one of several co-chaperones, which regulate the dimeric chaperone Hsp90. Hsp90, Aha1, and other accessory proteins interact in a chaperone cycle driven by ATP binding and hydrolysis. Aha1 promotes dimerization of the N-terminal domains of Hsp90, and stimulates its low intrinsic ATPase activity. One Aha1 molecule binds per Hsp90 dimer. The N- and C- terminal domains of Aha1 cooperatively bind across the dimer interface of Hsp90. The C-terminal domain of Aha1 binds the N-terminal Hsp90 ATPase domain. Aha1 may regulate the dwell time of Hsp90 with client proteins. Aha1 m

>PF08327 AHSA1: Activator of Hsp90 ATPase homolog 1-like protein; InterPro: IPR013538 This family includes eukaryotic, prokaryotic and archaeal proteins that bear similarity to a C-terminal region of human activator of 90 kDa heat shock protein ATPase homologue 1 (AHSA1/p38, O95433 from SWISSPROT)

Probab=97.20  E-value=0.015  Score=41.99  Aligned_cols=121  Identities=9%  Similarity=0.072  Sum_probs=66.4

Q ss_pred             cCCHHHHHHHhhcCCcccCCcCCCCeeeEEEEecccCCCCcEEEEEeecCCCCCcccchhcccccccccccccccceeee
Q 038195            8 KSPADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSAGDFPATRTEEQTQSSHLRGLHYQWSQHFVEK   87 (172)
Q Consensus         8 ~apa~kvw~~~~d~~~~lpk~~P~~v~sve~~eGd~g~~Gsvr~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (172)
                      +||+++||+++.+.. .+.+|.+     +...+.+ -.+|..-++ ...++.                         .-.
T Consensus         1 ~ap~e~Vw~a~t~~~-~~~~W~~-----~~~~~~~-~~~Gg~~~~-~~~~g~-------------------------~~~   47 (124)
T PF08327_consen    1 DAPPERVWEALTDPE-GLAQWFT-----TSEAEMD-FRPGGSFRF-MDPDGG-------------------------EFG   47 (124)
T ss_dssp             SSSHHHHHHHHHSHH-HHHHHSE-----EEEEEEE-CSTTEEEEE-EETTSE-------------------------EEE
T ss_pred             CcCHHHHHHHHCCHh-HHhhccC-----CCcceee-eecCCEEEE-EecCCC-------------------------Cce
Confidence            689999999999974 7788932     2223333 234553333 223333                         111


Q ss_pred             eEEEEE-ecCCCceEEEEEEeCccccceeEEEEEEEEEecCCCcEEEEEEEEEecCCCCCChhh-hhHHHHHHHHHHHHH
Q 038195           88 MKEKVE-LDPENKTVAMVVIEGDLMKHFKSYKVIIKVIPKSEGSLVKWIWEYEKLQEDGPTPSK-YVDFVTDLTKNIDAH  165 (172)
Q Consensus        88 ~kEri~-~D~~~~~i~Y~vieGdl~~~~~s~~~t~~v~p~~dGs~v~w~~~ye~~~~~~~~p~~-~~~~~~~~~k~ie~y  165 (172)
                      ..=++. +++..+ |.|+.--++... -.....++.|++.++||.++.+..=.+...   .... .......++..|.+|
T Consensus        48 ~~~~v~~~~p~~~-i~~~~~~~~~~~-~~~~~v~~~~~~~~~~T~l~~~~~~~~~~~---~~~~~~~~gw~~~l~~L~~~  122 (124)
T PF08327_consen   48 FDGTVLEVEPPER-IVFTWRMPDDPD-GPESRVTFEFEEEGGGTRLTLTHSGFPDDD---EEEEGMEQGWEQMLDRLKAY  122 (124)
T ss_dssp             EEEEEEEEETTTE-EEEEEEEETSSS-CEEEEEEEEEEEETTEEEEEEEEEEEHSHH---HHHHCHHHHHHHHHHHHHHH
T ss_pred             eeEEEEEEeCCEE-EEEEEEccCCCC-CCceEEEEEEEEcCCcEEEEEEEEcCCccH---HHHHHHHHHHHHHHHHHHHH
Confidence            223366 655544 667744333221 234567889999666687776662221110   0111 344667777888887


Q ss_pred             H
Q 038195          166 L  166 (172)
Q Consensus       166 l  166 (172)
                      |
T Consensus       123 l  123 (124)
T PF08327_consen  123 L  123 (124)
T ss_dssp             H
T ss_pred             h
Confidence            6

This protein is known to interact with the middle domain of Hsp90, and stimulate its ATPase activity []. It is probably a general up regulator of Hsp90 function, particularly contributing to its efficiency in conditions of increased stress []. p38 is also known to interact with the cytoplasmic domain of the VSV G protein, and may thus be involved in protein transport []. It has also been reported as being under expressed in Down's syndrome. This region is found repeated in two members of this family (Q8XY04 from SWISSPROT and Q6MH87 from SWISSPROT). ; GO: 0006950 response to stress; PDB: 2KEW_A 2KTE_A 2IL5_A 1ZXF_A 2L65_A 2GKD_A 1XN6_A 3OTL_B 2LCG_A 3Q63_D ....

>cd08901 SRPBCC_CalC_Aha1-like_8 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins

Probab=97.16  E-value=0.01  Score=44.63  Aligned_cols=122  Identities=12%  Similarity=0.073  Sum_probs=71.8

Q ss_pred             ceEEEEcCCHHHHHHHhhcCCcccCCcCCCCeeeEEEEecccCCCCcEEEEEeecCCCCCcccchhcccccccccccccc
Q 038195            2 ETEVEIKSPADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSAGDFPATRTEEQTQSSHLRGLHYQWS   81 (172)
Q Consensus         2 ~~e~~i~apa~kvw~~~~d~~~~lpk~~P~~v~sve~~eGd~g~~Gsvr~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~   81 (172)
                      +.++.|+||+++||+++.+.. .+.+|.+. -.+.++.      +|..-.+.|...+.                      
T Consensus         3 ~~~~~i~ap~e~Vw~a~t~p~-~l~~W~~~-~~~~~~~------~Gg~~~~~~~~~~~----------------------   52 (136)
T cd08901           3 KTAMLIRRPVAEVFEAFVDPE-ITTKFWFT-GSSGRLE------EGKTVTWDWEMYGA----------------------   52 (136)
T ss_pred             eEEEEecCCHHHHHHHhcCHH-Hhcccccc-CCCcccc------CCCEEEEEEEccCC----------------------
Confidence            578999999999999999974 78887553 2233332      34334566644332                      


Q ss_pred             cceeeeeEEEEE-ecCCCceEEEEEEeCccccceeEEEEEEEEEecC-CCcEEEEEEEEEecCCCCCChhh------hhH
Q 038195           82 QHFVEKMKEKVE-LDPENKTVAMVVIEGDLMKHFKSYKVIIKVIPKS-EGSLVKWIWEYEKLQEDGPTPSK------YVD  153 (172)
Q Consensus        82 ~~~~~~~kEri~-~D~~~~~i~Y~vieGdl~~~~~s~~~t~~v~p~~-dGs~v~w~~~ye~~~~~~~~p~~------~~~  153 (172)
                           .+.=++. +++ .+.+.|+--.++   ..  -..++++++.+ +||.++.+-...+..    .++.      ...
T Consensus        53 -----~~~g~~~~~~p-~~~l~~~w~~~~---~~--s~v~~~l~~~~~ggT~ltl~~~~~~~~----~~~~~~~~~~~~~  117 (136)
T cd08901          53 -----SVPVNVLEIEP-NKRIVIEWGDPG---EP--TTVEWTFEELDDGRTFVTITESGFPGT----DDEGLKQALGSTE  117 (136)
T ss_pred             -----ceEEEEEEEcC-CCEEEEEecCCC---CC--EEEEEEEEECCCCcEEEEEEECCCCCC----cHHHHHHHhcCCC
Confidence                 0223444 644 456667654322   12  23688899987 558877775433221    1111      123


Q ss_pred             HHHHHHHHHHHHHhh
Q 038195          154 FVTDLTKNIDAHLLK  168 (172)
Q Consensus       154 ~~~~~~k~ie~ylla  168 (172)
                      .-..++..|++||..
T Consensus       118 GW~~~L~~L~~~le~  132 (136)
T cd08901         118 GWTLVLAGLKAYLEH  132 (136)
T ss_pred             CHHHHHHHHHHHHhc
Confidence            456677888888864

SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.

>COG3832 Uncharacterized conserved protein [Function unknown]

Probab=96.43  E-value=0.068  Score=41.36  Aligned_cols=29  Identities=17%  Similarity=0.335  Sum_probs=25.5

Q ss_pred             CceEEEEcCCHHHHHHHhhcCCcccCCcCC
Q 038195            1 METEVEIKSPADKFYNTFSSKAHTVPNMSP   30 (172)
Q Consensus         1 ~~~e~~i~apa~kvw~~~~d~~~~lpk~~P   30 (172)
                      ++.+..|++|+++||+++.+.. ++.+|+.
T Consensus        10 ~~~er~i~aP~e~Vf~A~Tdpe-~l~~W~~   38 (149)
T COG3832          10 LEIERLIDAPPEKVFEALTDPE-LLARWFM   38 (149)
T ss_pred             EEEEEeecCCHHHHHHHhcCHH-HHHhhcC
Confidence            3568889999999999999984 8999987

>PTZ00220 Activator of HSP-90 ATPase; Provisional

Probab=96.15  E-value=0.061  Score=40.68  Aligned_cols=119  Identities=15%  Similarity=0.113  Sum_probs=62.5

Q ss_pred             EcCCHHHHHHHhhcCCcccCCc-CCCCeeeEEEEecccCCCCcEEEEEeecCCCCCcccchhccccccccccccccccee
Q 038195            7 IKSPADKFYNTFSSKAHTVPNM-SPGNLHGVEVHEGDWESHGSVKSWTFSAGDFPATRTEEQTQSSHLRGLHYQWSQHFV   85 (172)
Q Consensus         7 i~apa~kvw~~~~d~~~~lpk~-~P~~v~sve~~eGd~g~~Gsvr~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (172)
                      ++||+++||+++.+.. .+.+| .+. ...++..      +|..-.  +..+ .                          
T Consensus         1 f~ap~e~Vw~A~Tdp~-~l~~w~~~~-~~~~d~~------~GG~f~--~~~~-~--------------------------   43 (132)
T PTZ00220          1 FYVPPEVLYNAFLDAY-TLTRLSLGS-PAEMDAK------VGGKFS--LFNG-S--------------------------   43 (132)
T ss_pred             CCCCHHHHHHHHcCHH-HHHHHhcCC-CccccCC------cCCEEE--EecC-c--------------------------
Confidence            4799999999999974 77788 432 2223322      333222  2112 1                          


Q ss_pred             eeeEEEEE-ecCCCc-eEEEEEEeCccccceeEEEEEEEEEecCC-CcEEEEEEEEEecCCC---CCChhhhhHHHHH-H
Q 038195           86 EKMKEKVE-LDPENK-TVAMVVIEGDLMKHFKSYKVIIKVIPKSE-GSLVKWIWEYEKLQED---GPTPSKYVDFVTD-L  158 (172)
Q Consensus        86 ~~~kEri~-~D~~~~-~i~Y~vieGdl~~~~~s~~~t~~v~p~~d-Gs~v~w~~~ye~~~~~---~~~p~~~~~~~~~-~  158 (172)
                        +.-++. +|+..+ .++++.-+. -...+  -..++.++|.++ ||.++.+..-.+..+.   ....+...+.-.. +
T Consensus        44 --~~G~~~ev~pp~rlv~tw~~~~~-~~~~~--s~vt~~~~~~~~g~T~lt~~~~g~~~~~~~~~~~~~~~~~~GW~~~~  118 (132)
T PTZ00220         44 --VEGEFTELEKPKKIVQKWRFRDW-EEDVY--SKVTIEFRAVEEDHTELKLTQTGIPSLDKFGNGGCLERCRNGWTQNF  118 (132)
T ss_pred             --eEEEEEEEcCCCEEEEEEecCCC-CCCCc--eEEEEEEEeCCCCcEEEEEEEecCccccccCCCchhhHHHhChHHHH
Confidence              223444 655543 334444221 11112  247899999755 4888877763322211   0123334444455 6


Q ss_pred             HHHHHHHHh
Q 038195          159 TKNIDAHLL  167 (172)
Q Consensus       159 ~k~ie~yll  167 (172)
                      +..|++||-
T Consensus       119 ld~L~~~l~  127 (132)
T PTZ00220        119 LDRFEKILG  127 (132)
T ss_pred             HHHHHHHhC
Confidence            888888873

>cd08874 START_STARD9-like C-terminal START domain of mammalian STARD9, and related domains; lipid binding

Probab=96.12  E-value=0.57  Score=38.50  Aligned_cols=121  Identities=13%  Similarity=0.017  Sum_probs=74.9

Q ss_pred             eEEEEcCCHHHHHHHhhcCCcccCCcCCCCeeeEEEEecccCCCCcEEEEEeecCCCCCcccchhccccccccccccccc
Q 038195            3 TEVEIKSPADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSAGDFPATRTEEQTQSSHLRGLHYQWSQ   82 (172)
Q Consensus         3 ~e~~i~apa~kvw~~~~d~~~~lpk~~P~~v~sve~~eGd~g~~Gsvr~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~   82 (172)
                      .+.++++|++++|+++.|.. ..++|.+ .++++++++--+... .|-++.+.  .+ -+.              ..   
T Consensus        49 ge~~v~as~~~v~~ll~D~~-~r~~Wd~-~~~~~~vl~~~~~d~-~i~y~~~~--~P-wp~--------------~~---  105 (205)
T cd08874          49 GAGVIKAPLATVWKAVKDPR-TRFLYDT-MIKTARIHKTFTEDI-CLVYLVHE--TP-LCL--------------LK---  105 (205)
T ss_pred             EEEEEcCCHHHHHHHHhCcc-hhhhhHH-hhhheeeeeecCCCe-EEEEEEec--CC-CCC--------------CC---
Confidence            46788999999999999985 7899999 599999998531111 33333332  11 000              00   


Q ss_pred             ceeeeeEEEEE-ecCCCceEEEEEEeC-ccc--c----ceeEEEEEEEEEec---CCC-cEEEEEEEEEecCCCCC
Q 038195           83 HFVEKMKEKVE-LDPENKTVAMVVIEG-DLM--K----HFKSYKVIIKVIPK---SEG-SLVKWIWEYEKLQEDGP  146 (172)
Q Consensus        83 ~~~~~~kEri~-~D~~~~~i~Y~vieG-dl~--~----~~~s~~~t~~v~p~---~dG-s~v~w~~~ye~~~~~~~  146 (172)
                      ....++..+.. .+.....+..+-++- .++  .    ....+.+-+.++|.   ++| |.++..+.-++.+++.|
T Consensus       106 ~~RDfV~l~~~~~~~~~~vi~~~SV~~~~~P~~~~~~VR~~~~~~gw~i~P~~~~g~~~t~vty~~q~DPggg~iP  181 (205)
T cd08874         106 QPRDFCCLQVEAKEGELSVVACQSVYDKSMPEPGRSLVRGEILPSAWILEPVTVEGNQYTRVIYIAQVALCGPDVP  181 (205)
T ss_pred             CCCeEEEEEEEEECCCcEEEEEEecccccCCCCCCCeEEeeeEeeeEEEEECccCCCCcEEEEEEEEECCCCCCCC
Confidence            01223333333 344444444444444 222  1    24577888999998   777 99999999999965554

This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD9 (also known as KIAA1300), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C /PITP /Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Some members of this subfamily have N-terminal kinesin motor domains. STARD9 interacts with supervillin, a protein important for efficient cytokinesis, perhaps playing a role in coordinating microtubule motors with actin and myosin II functions at membranes. The human gene encoding STARD9 lies within a target region for LGMD2A, an autosomal recessive form of limb-girdle muscular dystrophy.

>cd08873 START_STARD14_15-like Lipid-binding START domain of mammalian STARDT14, -15, and related proteins

Probab=96.07  E-value=0.71  Score=38.92  Aligned_cols=142  Identities=9%  Similarity=0.008  Sum_probs=85.5

Q ss_pred             eEEEEcCCHHHHHHHhhcCCcccCCcCCCCeeeEEEEecccCCCCcEEEEEeecCCCCCcccchhccccccccccccccc
Q 038195            3 TEVEIKSPADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSAGDFPATRTEEQTQSSHLRGLHYQWSQ   82 (172)
Q Consensus         3 ~e~~i~apa~kvw~~~~d~~~~lpk~~P~~v~sve~~eGd~g~~Gsvr~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~   82 (172)
                      .+..+++|++++|+++.|.. ..++|.++ ..++++++--+... .+-++.+..  + .+.                ..|
T Consensus        81 ~e~~vd~s~~~v~dlL~D~~-~R~~WD~~-~~e~evI~~id~d~-~iyy~~~p~--P-wPv----------------k~R  138 (235)
T cd08873          81 VELKVQTCASDAFDLLSDPF-KRPEWDPH-GRSCEEVKRVGEDD-GIYHTTMPS--L-TSE----------------KPN  138 (235)
T ss_pred             EEEEecCCHHHHHHHHhCcc-hhhhhhhc-ccEEEEEEEeCCCc-EEEEEEcCC--C-CCC----------------CCc
Confidence            56789999999999999985 78999995 99999998421112 223333221  1 000                012


Q ss_pred             ceeeeeEEEEE---ecCCC-ceEEEEEEeCc-cc--c---ceeEEEEEEEEEecCCC-cEEEEEEEEEecCCC--CCChh
Q 038195           83 HFVEKMKEKVE---LDPEN-KTVAMVVIEGD-LM--K---HFKSYKVIIKVIPKSEG-SLVKWIWEYEKLQED--GPTPS  149 (172)
Q Consensus        83 ~~~~~~kEri~---~D~~~-~~i~Y~vieGd-l~--~---~~~s~~~t~~v~p~~dG-s~v~w~~~ye~~~~~--~~~p~  149 (172)
                      +   ++..+-.   .+... ..|...-+.=+ ++  +   ....+.+-+.+.|.++| |.|+.....+|.--.  +-+..
T Consensus       139 D---fV~~~s~~~~~~~~~~~~I~~~SV~h~~~Pp~kgyVR~~~~~ggW~I~p~~~~~t~VtY~~~~dPg~~~~~~~~~~  215 (235)
T cd08873         139 D---FVLLVSRRKPATDGDPYKVAFRSVTLPRVPQTPGYSRTEVACAGFVIRQDCGTCTEVSYYNETNPKLLSYVTCNLA  215 (235)
T ss_pred             e---EEEEEEEEeccCCCCeEEEEEeeeecccCCCCCCeEEEEEEeeeEEEEECCCCcEEEEEEEEcCCCccceeeecch
Confidence            2   2222222   22222 44555555522 21  1   25688899999999877 988888877765321  11233


Q ss_pred             hhhHHHHHHHHHHHHHHhhc
Q 038195          150 KYVDFVTDLTKNIDAHLLKE  169 (172)
Q Consensus       150 ~~~~~~~~~~k~ie~ylla~  169 (172)
                      .+-...-..|+..+.||..|
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~  235 (235)
T cd08873         216 GLSALYCRTFHCCEQFLVTN  235 (235)
T ss_pred             hhhHHHHHHHHHHHHHhccC
Confidence            34456677788888888754

This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974), STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 and STARD15/ACOT12 are type II acetyl-CoA thioesterases; they catalyze the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. Rat CACH hydrolyzes acetyl-CoA to acetate an

>cd08863 SRPBCC_DUF1857 DUF1857, an uncharacterized ligand-binding domain of the SRPBCC domain superfamily

Probab=95.03  E-value=1.2  Score=34.92  Aligned_cols=110  Identities=18%  Similarity=0.287  Sum_probs=69.0

Q ss_pred             CHHHHHHHhhcCCcccCCcCCCCeeeEEEEecccCCCCcEEEEEeecCCCCCcccchhcccccccccccccccceeeeeE
Q 038195           10 PADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSAGDFPATRTEEQTQSSHLRGLHYQWSQHFVEKMK   89 (172)
Q Consensus        10 pa~kvw~~~~d~~~~lpk~~P~~v~sve~~eGd~g~~Gsvr~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k   89 (172)
                      ..+.+|+-+...+..-..++|. +.+|++++.++  .-..|.++|+.. .                            ++
T Consensus        18 Tr~QlW~GL~~kar~p~~Fvp~-i~~c~Vl~e~~--~~l~Rel~f~~~-~----------------------------v~   65 (141)
T cd08863          18 TRAQLWRGLVLRAREPQLFVPG-LDRCEVLSESG--TVLERELTFGPA-K----------------------------IR   65 (141)
T ss_pred             CHHHHHhHHHhhhCCchhcccc-cceEEEEecCC--CEEEEEEEECCc-e----------------------------EE
Confidence            3578999888765444457775 99999998762  245699999652 3                            78


Q ss_pred             EEEEecCCCceEEEEEEe-CccccceeEEEEEEEEEecCCCcEEEEEEEEEecCCCCCChh--hhhHHHHHHHHH
Q 038195           90 EKVELDPENKTVAMVVIE-GDLMKHFKSYKVIIKVIPKSEGSLVKWIWEYEKLQEDGPTPS--KYVDFVTDLTKN  161 (172)
Q Consensus        90 Eri~~D~~~~~i~Y~vie-Gdl~~~~~s~~~t~~v~p~~dGs~v~w~~~ye~~~~~~~~p~--~~~~~~~~~~k~  161 (172)
                      |++.+++.. .+.|.+-. |+.        .++.++...+|. .-.++.|+...++..+++  .+.+...++++.
T Consensus        66 e~vt~~~~~-~v~f~~~~~g~~--------l~~~iee~~~g~-L~lrf~ye~~~p~~~~~e~~~~~~~~~~a~~~  130 (141)
T cd08863          66 ETVTLEPPS-RVHFLQADAGGT--------LTNTIEEPEDGA-LYLRFVYETTLPEVAEEEAKAYQEIVKQAYKE  130 (141)
T ss_pred             EEEEecCCc-EEEEEecCCCCe--------EEEEeccCCCCc-EEEEEEEEecCCCcCchHHHHHHHHHHHHHHH
Confidence            999975554 46677655 331        234444444554 567888888765433332  234455555543

Uncharacterized family of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins

>PF08982 DUF1857: Domain of unknown function (DUF1857); InterPro: IPR015075 This protein has no known function

Probab=94.98  E-value=0.74  Score=36.18  Aligned_cols=108  Identities=19%  Similarity=0.242  Sum_probs=57.6

Q ss_pred             CHHHHHHHhhcCCcccCCcCCCCeeeEEEEecccCCCCcEEEEEeecCCCCCcccchhcccccccccccccccceeeeeE
Q 038195           10 PADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSAGDFPATRTEEQTQSSHLRGLHYQWSQHFVEKMK   89 (172)
Q Consensus        10 pa~kvw~~~~d~~~~lpk~~P~~v~sve~~eGd~g~~Gsvr~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k   89 (172)
                      +.+.+|+-+...+..-..++| .|.+|++++-.  +..-.|.++|  |+.                           .++
T Consensus        19 Tr~QlW~GL~~kar~p~~Fvp-~i~~c~Vl~e~--~~~~~R~v~f--g~~---------------------------~v~   66 (149)
T PF08982_consen   19 TREQLWRGLVLKARNPQLFVP-GIDSCEVLSES--DTVLTREVTF--GGA---------------------------TVR   66 (149)
T ss_dssp             -HHHHHHHHHHHHH-GGGT-T-T--EEEEEEE---SSEEEEEEEE--TTE---------------------------EEE
T ss_pred             CHHHHHHHHHHHHhChhhCcc-ccCeEEEEecC--CCeEEEEEEE--CCc---------------------------EEE
Confidence            356899998876544456888 49999999864  4567899999  322                           388


Q ss_pred             EEEEecCCCceEEEEEEeCccccceeEEEEEEEEEecCCCcEEEEEEEEEecCC----CCCChhhhhHHHHHHH
Q 038195           90 EKVELDPENKTVAMVVIEGDLMKHFKSYKVIIKVIPKSEGSLVKWIWEYEKLQE----DGPTPSKYVDFVTDLT  159 (172)
Q Consensus        90 Eri~~D~~~~~i~Y~vieGdl~~~~~s~~~t~~v~p~~dGs~v~w~~~ye~~~~----~~~~p~~~~~~~~~~~  159 (172)
                      |++.+.+.. .+.|...   -+   .+...  .++..++| -.-.++.|+...+    .++....+.+....++
T Consensus        67 E~v~~~~~~-~V~f~~~---~G---s~lt~--~I~e~~~g-~L~ltf~ye~~~p~~~~gs~e~~~~~~~~~~ay  130 (149)
T PF08982_consen   67 ERVTLYPPE-RVDFAQH---DG---SSLTN--IISEPEPG-DLFLTFTYEWRLPGVEPGSPEAKAYQEFYKSAY  130 (149)
T ss_dssp             EEEEEETTT-EEEESSS---BE---EEEEE--EEEEEETT-EEEEEEEEEEE----S---------BHHHHHHH
T ss_pred             EEEEEeCCc-EEEEEcC---CC---CEEEE--EEecCCCC-cEEEEEEEEecccccCCCCHHHHHHHHHHHHHH
Confidence            999965554 5666211   21   23333  33333344 5567777776643    2223334555555555

It is found in various hypothetical bacterial and fungal proteins. ; PDB: 2FFS_B.

>cd08868 START_STARD1_3_like Cholesterol-binding START domain of mammalian STARD1, -3 and related proteins

Probab=94.57  E-value=2  Score=34.62  Aligned_cols=141  Identities=10%  Similarity=0.075  Sum_probs=76.8

Q ss_pred             eEEEEcCCHHHHHHHhhcCCcccCCcCCCCeeeEEEEecccCCCCcEEEEEeecC-CCCCcccchhcccccccccccccc
Q 038195            3 TEVEIKSPADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSAG-DFPATRTEEQTQSSHLRGLHYQWS   81 (172)
Q Consensus         3 ~e~~i~apa~kvw~~~~d~~~~lpk~~P~~v~sve~~eGd~g~~Gsvr~~~~~~g-g~~~~~~~~~~~~~~~~~~~~~~~   81 (172)
                      .+..+++|++.++..+-+..+..++|.+. +..+++++.-.+. -.|-...+... +.|.                  -.
T Consensus        52 ~~~~i~~~~~~v~~~l~~d~~~~~~Wd~~-~~~~~~i~~~d~~-~~i~y~~~~~~~~~~v------------------s~  111 (208)
T cd08868          52 LTGVLDCPAEFLYNELVLNVESLPSWNPT-VLECKIIQVIDDN-TDISYQVAAEAGGGLV------------------SP  111 (208)
T ss_pred             EEEEEcCCHHHHHHHHHcCccccceecCc-ccceEEEEEecCC-cEEEEEEecCcCCCcc------------------cc
Confidence            56788999999997554333578999996 8888888753111 12222122111 1111                  11


Q ss_pred             cceeeeeEEEEE-ecCCCceEEEEEEeCc-cc--cc---eeEEEEEEEEEecCC--C-cEEEEEEEEEecCCCCCCh-h-
Q 038195           82 QHFVEKMKEKVE-LDPENKTVAMVVIEGD-LM--KH---FKSYKVIIKVIPKSE--G-SLVKWIWEYEKLQEDGPTP-S-  149 (172)
Q Consensus        82 ~~~~~~~kEri~-~D~~~~~i~Y~vieGd-l~--~~---~~s~~~t~~v~p~~d--G-s~v~w~~~ye~~~~~~~~p-~-  149 (172)
                      |+   ++--+.- .++....+...-++-+ .+  +.   ...+.+-+.++|.++  + |.+.|.+..++++.- |.- . 
T Consensus       112 RD---fV~~r~~~~~~~~~~i~~~sv~h~~~P~~~g~VR~~~~~~~~~i~p~~~~~~~t~v~~~~~~Dp~G~i-P~~lvN  187 (208)
T cd08868         112 RD---FVSLRHWGIRENCYLSSGVSVEHPAMPPTKNYVRGENGPGCWILRPLPNNPNKCNFTWLLNTDLKGWL-PQYLVD  187 (208)
T ss_pred             cc---eEEEEEEEecCCeEEEEEEeccCCCCCCCCCeEEEeccccEEEEEECCCCCCceEEEEEEEECCCCCC-cceeee
Confidence            23   2222333 3343344444434422 21  11   345667788888754  4 999999999998752 211 0 


Q ss_pred             -hhhHHHHHHHHHHHHHHh
Q 038195          150 -KYVDFVTDLTKNIDAHLL  167 (172)
Q Consensus       150 -~~~~~~~~~~k~ie~yll  167 (172)
                       -.......+++.|..++.
T Consensus       188 ~~~~~~~~~~~~~Lr~~~~  206 (208)
T cd08868         188 QALASVLLDFMKHLRKRIA  206 (208)
T ss_pred             hhhHHHHHHHHHHHHHHHh
Confidence             112344566677777664

This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and STARD3 (also known as metastatic lymph node 64/MLN64). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. This STARD1-like subfamily has a high affinity for cholesterol. STARD1/StAR can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synth

>PF10698 DUF2505: Protein of unknown function (DUF2505); InterPro: IPR019639 This entry represents proteins found Actinobacteria and Proteobacteria

Probab=93.63  E-value=2.7  Score=32.70  Aligned_cols=125  Identities=18%  Similarity=0.124  Sum_probs=66.9

Q ss_pred             ceEEEEcCCHHHHHHHhhcCCc---ccCCcCCCCeeeEEEEecccCCCCcEEEEEeecCCCCCcccchhccccccccccc
Q 038195            2 ETEVEIKSPADKFYNTFSSKAH---TVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSAGDFPATRTEEQTQSSHLRGLHY   78 (172)
Q Consensus         2 ~~e~~i~apa~kvw~~~~d~~~---~lpk~~P~~v~sve~~eGd~g~~Gsvr~~~~~~gg~~~~~~~~~~~~~~~~~~~~   78 (172)
                      +.++++.+|++++|+++.|...   .+ +-+..-...++..+.+++  | ++.. .....+ ...-+..+..-..+.|.+
T Consensus         2 ~~~~~~~~~~~~v~~~~~d~~y~~~r~-~~~g~~~~~~~~~~~~~~--g-~~v~-~~~~v~-~~~lP~~~~k~v~~~l~v   75 (159)
T PF10698_consen    2 EHSVEYPAPVERVWAAFTDEDYWEARC-AALGADNAEVESFEVDGD--G-VRVT-VRQTVP-ADKLPSAARKFVGGDLRV   75 (159)
T ss_pred             eEEEEcCCCHHHHHHHHcCHHHHHHHH-HHcCCCCceEEEEEEcCC--e-EEEE-EEEecC-hhhCCHHHHHhcCCCeEE
Confidence            5678899999999999998532   22 223221222232332211  2 2221 111211 101111121111111111


Q ss_pred             ccccceeeeeEEEEE-ecCCCceEEEEEEeCccccceeEEEEEEEEEecCCCcEEEEEEEEEecCC
Q 038195           79 QWSQHFVEKMKEKVE-LDPENKTVAMVVIEGDLMKHFKSYKVIIKVIPKSEGSLVKWIWEYEKLQE  143 (172)
Q Consensus        79 ~~~~~~~~~~kEri~-~D~~~~~i~Y~vieGdl~~~~~s~~~t~~v~p~~dGs~v~w~~~ye~~~~  143 (172)
                      .        -.|... .++..++.+|++--.+.   --++++++.+.|.++||.+.+..+.+-.-+
T Consensus        76 ~--------~~e~w~~~~~g~~~g~~~~~~~G~---P~~~~G~~~L~~~~~gt~~~~~g~v~v~VP  130 (159)
T PF10698_consen   76 T--------RTETWTPLDDGRRTGTFTVSIPGA---PVSISGTMRLRPDGGGTRLTVEGEVKVKVP  130 (159)
T ss_pred             E--------EEEEEecCCCCeEEEEEEEEecCc---eEEEEEEEEEecCCCCEEEEEEEEEEEEEc
Confidence            1        123333 47788888888654333   257899999999888899999999877654

The function is not known.

>cd08903 START_STARD5-like Lipid-binding START domain of mammalian STARD5 and related proteins

Probab=93.54  E-value=3.4  Score=33.59  Aligned_cols=141  Identities=11%  Similarity=0.092  Sum_probs=77.0

Q ss_pred             eEEEEcCCHHHHHHHhhcCCc-ccCCcCCCCeeeEEEEecccCCCCcEEEEEeecCCCCCcccchhcccccccccccccc
Q 038195            3 TEVEIKSPADKFYNTFSSKAH-TVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSAGDFPATRTEEQTQSSHLRGLHYQWS   81 (172)
Q Consensus         3 ~e~~i~apa~kvw~~~~d~~~-~lpk~~P~~v~sve~~eGd~g~~Gsvr~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~   81 (172)
                      .+..+.++++++|+.+.|..+ .-++|.+. +.+++++|--+   +....+.+....+               .+.+...
T Consensus        50 ~e~~i~~s~~~~~~~l~d~~~~~r~~W~~~-~~~~~vle~id---~~~~i~~~~~p~~---------------~~~~vs~  110 (208)
T cd08903          50 GEGIVYATLEQVWDCLKPAAGGLRVKWDQN-VKDFEVVEAIS---DDVSVCRTVTPSA---------------AMKIISP  110 (208)
T ss_pred             EEEEecCCHHHHHHHHHhccchhhhhhhhc-cccEEEEEEec---CCEEEEEEecchh---------------cCCCcCC
Confidence            577889999999999987643 22799995 89999988531   1222233211111               0112233


Q ss_pred             cceeeeeEEEEE-ecCCCceEEEEEEeCc-cc--ccee---E--EEEEEEEEecCCC-cEEEEEEEEEecCCCCCChhhh
Q 038195           82 QHFVEKMKEKVE-LDPENKTVAMVVIEGD-LM--KHFK---S--YKVIIKVIPKSEG-SLVKWIWEYEKLQEDGPTPSKY  151 (172)
Q Consensus        82 ~~~~~~~kEri~-~D~~~~~i~Y~vieGd-l~--~~~~---s--~~~t~~v~p~~dG-s~v~w~~~ye~~~~~~~~p~~~  151 (172)
                      |+++..  .... .++....+.+..++-+ ++  ..|-   .  +...++..|.+++ |.++|.+..++++.-   |.-+
T Consensus       111 RDfV~~--~~~~~~~d~~i~i~~~sv~h~~~P~~~~~VR~~~~~~g~~~~~~~~~~~~t~v~~~~~~DpkG~i---P~~l  185 (208)
T cd08903         111 RDFVDV--VLVKRYEDGTISSNATNVEHPLCPPQAGFVRGFNHPCGCFCEPVPGEPDKTQLVSFFQTDLSGYL---PQTV  185 (208)
T ss_pred             CceEEE--EEEEecCCceEEEeEEeccCCCCCCCCCeEEEeeeccEEEEEECCCCCCceEEEEEEEeccCCCc---CHHH
Confidence            443322  2223 4444445555455543 22  1111   1  2345555554555 999999999998752   3333


Q ss_pred             h-----HHHHHHHHHHHHHHh
Q 038195          152 V-----DFVTDLTKNIDAHLL  167 (172)
Q Consensus       152 ~-----~~~~~~~k~ie~yll  167 (172)
                      .     +.....++.|..+|.
T Consensus       186 vn~~~~~~~~~~~~~Lr~~~~  206 (208)
T cd08903         186 VDSFFPASMAEFYNNLTKAVK  206 (208)
T ss_pred             HHHHhhHHHHHHHHHHHHHHh
Confidence            2     334455566666653

This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD5, and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD5 is ubiquitously expressed, with highest levels in liver and kidney. STARD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression of the gene encoding STARD5 is increased by ER stress, and its mRNA and protein levels are elevated in a type I diabetic mouse model of human diabetic nephropathy.

>cd08913 START_STARD14-like Lipid-binding START domain of mammalian STARDT14 and related proteins

Probab=93.50  E-value=4.1  Score=34.36  Aligned_cols=114  Identities=11%  Similarity=-0.015  Sum_probs=65.6

Q ss_pred             eEEEEcCCHHHHHHHhhcCCcccCCcCCCCeeeEEEEecccCCCCcEEEEEeecCCCCCcccchhccccccccccccccc
Q 038195            3 TEVEIKSPADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSAGDFPATRTEEQTQSSHLRGLHYQWSQ   82 (172)
Q Consensus         3 ~e~~i~apa~kvw~~~~d~~~~lpk~~P~~v~sve~~eGd~g~~Gsvr~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~   82 (172)
                      .+..+++|++.+|+++.|.. ..++|.++ +.++++++--+..-. +.+++-.+-..|+.                  .|
T Consensus        85 ~e~~vd~s~e~v~~lL~D~~-~r~~Wd~~-~~e~~vIe~id~~~~-vY~v~~~p~~~pvs------------------~R  143 (240)
T cd08913          85 VEMVVHVDAAQAFLLLSDLR-RRPEWDKH-YRSCELVQQVDEDDA-IYHVTSPSLSGHGK------------------PQ  143 (240)
T ss_pred             EEEEEcCCHHHHHHHHhChh-hhhhhHhh-ccEEEEEEecCCCcE-EEEEecCCCCCCCC------------------CC
Confidence            56788999999999999875 78999995 999999885312222 44443222100110                  12


Q ss_pred             ceeeeeEEEEE-ecCCCc---eEEEEEEeCc-cc--c---ceeEEEEEEEEEecCCC-cEEEEEEEEEe
Q 038195           83 HFVEKMKEKVE-LDPENK---TVAMVVIEGD-LM--K---HFKSYKVIIKVIPKSEG-SLVKWIWEYEK  140 (172)
Q Consensus        83 ~~~~~~kEri~-~D~~~~---~i~Y~vieGd-l~--~---~~~s~~~t~~v~p~~dG-s~v~w~~~ye~  140 (172)
                      +   ++...-. -+.++.   .+..+.+.=+ ++  +   ....+.+-+.+.|.++| |.+.+...-.|
T Consensus       144 D---fV~~~s~~~~~~~g~~yii~~~sv~~P~~Pp~kgyVR~~~~~ggw~i~p~~~~~t~vtY~~~~dP  209 (240)
T cd08913         144 D---FVILASRRKPCDNGDPYVIALRSVTLPTHPPTPEYTRGETLCSGFCIWEESDQLTKVSYYNQATP  209 (240)
T ss_pred             e---EEEEEEEEeccCCCccEEEEEEEeecCCCCCCCCcEEeeecccEEEEEECCCCcEEEEEEEEeCC
Confidence            2   2222222 222222   2333333322 22  1   14577888999998887 88877554443

This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. There are two splice variants of

>cd08869 START_RhoGAP C-terminal lipid-binding START domain of mammalian STARD8, -12, -13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain

Probab=93.40  E-value=3.5  Score=33.22  Aligned_cols=114  Identities=12%  Similarity=0.069  Sum_probs=68.3

Q ss_pred             eEEEEcCCHHHHHHHhhcCCcccCCcCCCCeeeEEEEecccCCCCcEEEEEeecCCCCCcccchhccccccccccccccc
Q 038195            3 TEVEIKSPADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSAGDFPATRTEEQTQSSHLRGLHYQWSQ   82 (172)
Q Consensus         3 ~e~~i~apa~kvw~~~~d~~~~lpk~~P~~v~sve~~eGd~g~~Gsvr~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~   82 (172)
                      .+..++++++++++.+.+..   ++|.+. +.++++++--+.  .+ ..+.+.-..+ .+.                -. 
T Consensus        48 ~~~~v~a~~~~v~~~l~d~r---~~Wd~~-~~~~~vie~id~--~~-~i~y~~~~~p-~pv----------------~~-  102 (197)
T cd08869          48 ASTEVEAPPEEVLQRILRER---HLWDDD-LLQWKVVETLDE--DT-EVYQYVTNSM-APH----------------PT-  102 (197)
T ss_pred             EEEEeCCCHHHHHHHHHHHH---hccchh-hheEEEEEEecC--Cc-EEEEEEeeCC-CCC----------------CC-
Confidence            57789999999999887653   899996 888888875311  12 2222322222 111                01 


Q ss_pred             ceeeeeEEEEE-ecCCC--ceEEEEEEeC--ccccc---eeEEEEEEEEEecCCC-cEEEEEEEEEecCC
Q 038195           83 HFVEKMKEKVE-LDPEN--KTVAMVVIEG--DLMKH---FKSYKVIIKVIPKSEG-SLVKWIWEYEKLQE  143 (172)
Q Consensus        83 ~~~~~~kEri~-~D~~~--~~i~Y~vieG--dl~~~---~~s~~~t~~v~p~~dG-s~v~w~~~ye~~~~  143 (172)
                        ..++-.+.- .+.++  ..+.+.-++-  .+...   ...+.+-+.++|.++| |.+++.+..++.|.
T Consensus       103 --RDfV~~r~~~~~~~~g~~~i~~~Sv~~~~~~p~g~VR~~~~~~g~~i~p~~~~~t~vty~~~~Dp~G~  170 (197)
T cd08869         103 --RDYVVLRTWRTDLPKGACVLVETSVEHTEPVPLGGVRAVVLASRYLIEPCGSGKSRVTHICRVDLRGR  170 (197)
T ss_pred             --ceEEEEEEEEecCCCCcEEEEEECCcCCCCCCCCCEEEEEEeeeEEEEECCCCCeEEEEEEEECCCCC
Confidence              233444433 33333  3333333431  11111   3566788899998776 99999999999875

This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38), STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP), and STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. Some, including STARD12, -and -13, also have an N-terminal SAM (sterile alpha motif) domain; these have a SAM-RhoGAP-START domain organization. This subfamily is involved in cancer development. A large spectrum of cancers have dysregul

>cd08877 START_2 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family

Probab=93.39  E-value=2.6  Score=34.11  Aligned_cols=138  Identities=14%  Similarity=0.042  Sum_probs=75.8

Q ss_pred             eEEEEcCCHHHHHHHhhcCCcccCCcCCCCeeeEEEEecccCCCCcEEEEEeecCCCCCcccchhccccccccccccccc
Q 038195            3 TEVEIKSPADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSAGDFPATRTEEQTQSSHLRGLHYQWSQ   82 (172)
Q Consensus         3 ~e~~i~apa~kvw~~~~d~~~~lpk~~P~~v~sve~~eGd~g~~Gsvr~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~   82 (172)
                      .+..|++|++.+.+++.|. .+.|+|+|. ..+.+.++..+ ..-.|-.+.+  ..+ .+.+                .|
T Consensus        50 ~e~~i~~~~~~~~~vl~d~-~~~~~W~p~-~~~~~~l~~~~-~~~~v~y~~~--~~P-wPv~----------------~R  107 (215)
T cd08877          50 MEGEIDGPLFNLLALLNEV-ELYKTWVPF-CIRSKKVKQLG-RADKVCYLRV--DLP-WPLS----------------NR  107 (215)
T ss_pred             EEEEecCChhHeEEEEehh-hhHhhhccc-ceeeEEEeecC-CceEEEEEEE--eCc-eEec----------------ce
Confidence            5678899999999999998 589999996 55556665431 1112222222  222 2110                11


Q ss_pred             ceeeeeEEEEE-ecCCCceEEE--EEEeC----------cccc------ceeEEEEEEEEEecCCC-cEEEEEEEEEecC
Q 038195           83 HFVEKMKEKVE-LDPENKTVAM--VVIEG----------DLMK------HFKSYKVIIKVIPKSEG-SLVKWIWEYEKLQ  142 (172)
Q Consensus        83 ~~~~~~kEri~-~D~~~~~i~Y--~vieG----------dl~~------~~~s~~~t~~v~p~~dG-s~v~w~~~ye~~~  142 (172)
                      +..-+ ...++ ++ ++..+..  .-+..          +++.      ....+.+-+.++|-++| |.+++.+...|++
T Consensus       108 D~v~~-~~~~~~~~-~~~~i~i~~~si~~~~~~~~~~~~~iP~~~~~~vR~~~~~~~~~i~p~~~~~t~v~~~~~~DP~g  185 (215)
T cd08877         108 EAVFR-GFGVDRLE-ENGQIVILLKSIDDDPEFLKLTDLDIPSTSAKGVRRIIKYYGFVITPISPTKCYLRFVANVDPKM  185 (215)
T ss_pred             EEEEE-EEEEeeec-cCCCEEEEEecCCCCcccccccCCcCCCCCCCceEEEEecceEEEEEcCCCCeEEEEEEEcCCCc
Confidence            11111 12223 32 2333322  22211          0221      13677788899998887 9999988888777


Q ss_pred             CCCCChhhh-----hHHHHHHHHHHHHHH
Q 038195          143 EDGPTPSKY-----VDFVTDLTKNIDAHL  166 (172)
Q Consensus       143 ~~~~~p~~~-----~~~~~~~~k~ie~yl  166 (172)
                      ...|  .-+     +.....++++|.+.+
T Consensus       186 ~~IP--~~liN~~~k~~~~~~~~~l~k~~  212 (215)
T cd08877         186 SLVP--KSLLNFVARKFAGLLFEKIQKAA  212 (215)
T ss_pred             ccCC--HHHHHHHHHHHHHHHHHHHHHHH
Confidence            5333  332     335555666665543

Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a

>cd00177 START Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins

Probab=92.78  E-value=3.5  Score=31.51  Aligned_cols=116  Identities=9%  Similarity=0.005  Sum_probs=68.8

Q ss_pred             eEEEEcCCHHHHHHHhhcCCcccCCcCCCCeeeEEEEecccCCCCcEEEEEeecCCCCCcccchhccccccccccccccc
Q 038195            3 TEVEIKSPADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSAGDFPATRTEEQTQSSHLRGLHYQWSQ   82 (172)
Q Consensus         3 ~e~~i~apa~kvw~~~~d~~~~lpk~~P~~v~sve~~eGd~g~~Gsvr~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~   82 (172)
                      .+.++++|++.+++++.+. ...++|-|. +.++++++-.. ..-.|....+....+ .                  ..|
T Consensus        43 ~~~~i~~~~~~v~~~l~d~-~~~~~w~~~-~~~~~vl~~~~-~~~~i~~~~~~~p~p-~------------------~~R  100 (193)
T cd00177          43 AEGVIPASPEQVFELLMDI-DLRKKWDKN-FEEFEVIEEID-EHTDIIYYKTKPPWP-V------------------SPR  100 (193)
T ss_pred             EEEEECCCHHHHHHHHhCC-chhhchhhc-ceEEEEEEEeC-CCeEEEEEEeeCCCc-c------------------CCc
Confidence            5678899999999999986 467899985 99999998652 223444544443321 0                  111


Q ss_pred             ceeeeeEEEEE-ecC-CCceEEEEEEeCc-ccc--c---eeEEEEEEEEEecCCC-cEEEEEEEEEecCC
Q 038195           83 HFVEKMKEKVE-LDP-ENKTVAMVVIEGD-LMK--H---FKSYKVIIKVIPKSEG-SLVKWIWEYEKLQE  143 (172)
Q Consensus        83 ~~~~~~kEri~-~D~-~~~~i~Y~vieGd-l~~--~---~~s~~~t~~v~p~~dG-s~v~w~~~ye~~~~  143 (172)
                      +   ++--+.. .++ ....+...=++.+ ...  .   ...+.+-+.++|.++| |.+++.+..++.+.
T Consensus       101 d---fv~~~~~~~~~~~~~~~~~~Si~~~~~p~~~~~vR~~~~~~~~~i~~~~~~~~~vt~~~~~D~~g~  167 (193)
T cd00177         101 D---FVYLRRRRKLDDGTYVIVSKSVDHDSHPKEKGYVRAEIKLSGWIIEPLDPGKTKVTYVLQVDPKGS  167 (193)
T ss_pred             c---EEEEEEEEEcCCCeEEEEEeecCCCCCCCCCCcEEEEEEccEEEEEECCCCCEEEEEEEeeCCCCC
Confidence            2   2222222 333 2222333223322 111  1   2233456788888776 99999999998874

This family includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and related domains, such as the START domain of the Arabidopsis homeobox protein GLABRA 2. The mammalian STARDs are grouped into 8 subfamilies. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some members of this family, specific lipids that bind in this pocket are known; these include cholesterol (STARD1/STARD3/ STARD4/STARD5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2/ STARD7/STARD10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). The START domain is found either alone or in association with other domains. Mammalian STARDs participate in the control of various cellular pro

>cd08914 START_STARD15-like Lipid-binding START domain of mammalian STARD15 and related proteins

Probab=92.77  E-value=5.4  Score=33.72  Aligned_cols=48  Identities=25%  Similarity=0.241  Sum_probs=36.8

Q ss_pred             eEEEEcCCHHHHHHHhhcCCcccCCcCCCCeeeEEEEecccCCCCcEEEEE
Q 038195            3 TEVEIKSPADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWT   53 (172)
Q Consensus         3 ~e~~i~apa~kvw~~~~d~~~~lpk~~P~~v~sve~~eGd~g~~Gsvr~~~   53 (172)
                      .+..+++|++++++++.|.. ..|+|.++ +.++++++--+...- |..++
T Consensus        82 ~e~~vdvs~~~l~~LL~D~~-~r~~Wd~~-~~e~~vI~qld~~~~-vY~~~  129 (236)
T cd08914          82 VEKHVKRPAHLAYRLLSDFT-KRPLWDPH-FLSCEVIDWVSEDDQ-IYHIT  129 (236)
T ss_pred             EEEEEcCCHHHHHHHHhChh-hhchhHHh-hceEEEEEEeCCCcC-EEEEe
Confidence            57788999999999999985 78999996 888999885312222 55543

This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114) and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD15/ACOT12 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Rat CACH hydrolyzes acetyl-CoA to acetate and CoA. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. Human STARD15/ACOT12 may have roles in cholesterol metabolism and in beta-oxidation.

>cd08905 START_STARD1-like Cholesterol-binding START domain of mammalian STARD1 and related proteins

Probab=92.75  E-value=4.6  Score=32.86  Aligned_cols=140  Identities=11%  Similarity=0.139  Sum_probs=76.6

Q ss_pred             eEEEEcCCHHHHHHHhhcCCcccCCcCCCCeeeEEEEecccCCCCcEEEEEeecCCCCCcccchhccccccccccccccc
Q 038195            3 TEVEIKSPADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSAGDFPATRTEEQTQSSHLRGLHYQWSQ   82 (172)
Q Consensus         3 ~e~~i~apa~kvw~~~~d~~~~lpk~~P~~v~sve~~eGd~g~~Gsvr~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~   82 (172)
                      .+..+++|++++++.+-+.....++|.+. +.++++++--+  ..+ ..+.+.....|.               .+.-.|
T Consensus        53 ~e~~i~~~~~~l~~~l~~d~e~~~~W~~~-~~~~~vl~~id--~~~-~i~y~~~~p~p~---------------~~vs~R  113 (209)
T cd08905          53 LEVVVDQPLDNLYSELVDRMEQMGEWNPN-VKEVKILQRIG--KDT-LITHEVAAETAG---------------NVVGPR  113 (209)
T ss_pred             EEEEecCCHHHHHHHHHhchhhhceeccc-chHHHHHhhcC--CCc-eEEEEEeccCCC---------------CccCcc
Confidence            57789999999995554333478999995 88988887431  122 112221111110               001122


Q ss_pred             ceeeeeEEEEE-ecCCCceEEEEEEeCc-cc--c---ceeEEEEEEEEEecCC--C-cEEEEEEEEEecCCCCCChhhhh
Q 038195           83 HFVEKMKEKVE-LDPENKTVAMVVIEGD-LM--K---HFKSYKVIIKVIPKSE--G-SLVKWIWEYEKLQEDGPTPSKYV  152 (172)
Q Consensus        83 ~~~~~~kEri~-~D~~~~~i~Y~vieGd-l~--~---~~~s~~~t~~v~p~~d--G-s~v~w~~~ye~~~~~~~~p~~~~  152 (172)
                      +   ++..+.- -+..+..+.....+-+ ++  +   ......+-+.+.|.++  | |.++|.+..++++..   |.-+.
T Consensus       114 D---~V~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~VR~~~~~~~w~l~p~~~~~~~t~v~~~~~~DpkG~i---P~~lv  187 (209)
T cd08905         114 D---FVSVRCAKRRGSTCVLAGMATHFGLMPEQKGFIRAENGPTCIVLRPLAGDPSKTKLTWLLSIDLKGWL---PKSII  187 (209)
T ss_pred             c---eEEEEEEEEcCCcEEEEEEeecCCCCCCCCCeEEEEeeccEEEEEECCCCCCceEEEEEEeecCCCCC---CHHHH
Confidence            3   2333333 3344433222222333 21  1   1456667888999865  6 999999999999862   33222


Q ss_pred             -----HHHHHHHHHHHHHHh
Q 038195          153 -----DFVTDLTKNIDAHLL  167 (172)
Q Consensus       153 -----~~~~~~~k~ie~yll  167 (172)
                           +.....++.|.++|.
T Consensus       188 N~~~~~~~~~~~~~Lr~~~~  207 (209)
T cd08905         188 NQVLSQTQVDFANHLRQRMA  207 (209)
T ss_pred             HHHhHHhHHHHHHHHHHHHh
Confidence                 344455566666554

This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD1 has a high affinity for cholesterol. It can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synthesis deficiency and an accumulation of cholesterol in

>cd08906 START_STARD3-like Cholesterol-binding START domain of mammalian STARD3 and related proteins

Probab=90.67  E-value=8.1  Score=31.52  Aligned_cols=38  Identities=11%  Similarity=0.145  Sum_probs=31.5

Q ss_pred             eEEEEcCCHHHHH-HHhhcCCcccCCcCCCCeeeEEEEecc
Q 038195            3 TEVEIKSPADKFY-NTFSSKAHTVPNMSPGNLHGVEVHEGD   42 (172)
Q Consensus         3 ~e~~i~apa~kvw-~~~~d~~~~lpk~~P~~v~sve~~eGd   42 (172)
                      .+..+++|++.+| +++.|.. ..++|.+. +.++++++--
T Consensus        53 ~~~~v~~~~~~l~~~ll~D~~-~~~~W~~~-~~~~~vi~~~   91 (209)
T cd08906          53 LKAFMQCPAELVYQEVILQPE-KMVLWNKT-VSACQVLQRV   91 (209)
T ss_pred             EEEEEcCCHHHHHHHHHhChh-hccccCcc-chhhhheeec
Confidence            5778899999998 5778774 78999995 9999998753

This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD3 (also known as metastatic lymph node 64/MLN64) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD3 has a high affinity for cholesterol. It may function in trafficking endosomal cholesterol to a cytosolic acceptor or membrane. In addition to having a cytoplasmic START cholesterol-binding domain, STARD3 also contains an N-terminal MENTAL cholesterol-binding and protein-protein interaction domain. The MENTAL domain contains transmembrane helices and anchors MLN64 to endosome membranes. The gene encoding STARD3 is overexpressed in about 25% of breast cancers.

>cd08870 START_STARD2_7-like Lipid-binding START domain of mammalian STARD2, -7, and related proteins

Probab=85.54  E-value=18  Score=29.24  Aligned_cols=138  Identities=7%  Similarity=-0.019  Sum_probs=78.5

Q ss_pred             eEEEE-cCCHHHHHHHhhcCCcccCCcCCCCeeeEEEEecccCCCCcEEEEEeecCCCCCcccchhcccccccccccccc
Q 038195            3 TEVEI-KSPADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSAGDFPATRTEEQTQSSHLRGLHYQWS   81 (172)
Q Consensus         3 ~e~~i-~apa~kvw~~~~d~~~~lpk~~P~~v~sve~~eGd~g~~Gsvr~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~   81 (172)
                      ++.++ ++|++.+++++.|.. ..++|.+. +.+.++++-+. ..|+ ..+.+.-..+ .+.+                .
T Consensus        54 ~~~~~~~~s~~~~~~~l~D~~-~r~~Wd~~-~~~~~~le~~~-~~~~-~i~y~~~~~P-~P~s----------------~  112 (209)
T cd08870          54 VRGVFEDCTPELLRDFYWDDE-YRKKWDET-VIEHETLEEDE-KSGT-EIVRWVKKFP-FPLS----------------D  112 (209)
T ss_pred             EEEEEcCCCHHHHHHHHcChh-hHhhhhhh-eeeEEEEEecC-CCCc-EEEEEEEECC-CcCC----------------C
Confidence            45567 679999999999974 78999995 77888887652 2132 2222222222 2211                1


Q ss_pred             cceeeeeEEEEE-ec-CCCceEEEEEEeCc-ccc----ceeEEEEEEEEEec--CCC-cEEEEEEEEEecCCCCCChhhh
Q 038195           82 QHFVEKMKEKVE-LD-PENKTVAMVVIEGD-LMK----HFKSYKVIIKVIPK--SEG-SLVKWIWEYEKLQEDGPTPSKY  151 (172)
Q Consensus        82 ~~~~~~~kEri~-~D-~~~~~i~Y~vieGd-l~~----~~~s~~~t~~v~p~--~dG-s~v~w~~~ye~~~~~~~~p~~~  151 (172)
                         ..++-.+.. .| +....+....+.-. .+.    .+..|.+.+.+.|.  ++| |.+.++..-.+.+.  . |.-+
T Consensus       113 ---RD~V~~r~~~~~~~~~~~i~~~sv~~~~~P~~~~vRv~~~~~~~~i~p~~~~~~~t~~~~~~~~dp~G~--I-P~wl  186 (209)
T cd08870         113 ---REYVIARRLWESDDRSYVCVTKGVPYPSVPRSGRKRVDDYESSLVIRAVKGDGQGSACEVTYFHNPDGG--I-PREL  186 (209)
T ss_pred             ---ceEEEEEEEEEcCCCEEEEEEeCCcCCCCCCCCcEEEEEEEeEEEEEEecCCCCceEEEEEEEECCCCC--C-CHHH
Confidence               234444443 44 44444444444432 222    26788889999997  555 87777777766443  2 3332


Q ss_pred             h-----HHHHHHHHHHHHHHh
Q 038195          152 V-----DFVTDLTKNIDAHLL  167 (172)
Q Consensus       152 ~-----~~~~~~~k~ie~yll  167 (172)
                      .     ..+-.+++.|...+.
T Consensus       187 vN~~~~~~~~~~l~~l~~a~~  207 (209)
T cd08870         187 AKLAVKRGMPGFLKKLENALR  207 (209)
T ss_pred             HHHHHHhhhHHHHHHHHHHHh
Confidence            2     244455666665553

This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP), and STARD7 (also known as gestational trophoblastic tumor 1/GTT1). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may also have a mitochondrial function. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be invo

>cd08911 START_STARD7-like Lipid-binding START domain of mammalian STARD7 and related proteins

Probab=85.05  E-value=19  Score=29.16  Aligned_cols=138  Identities=14%  Similarity=0.075  Sum_probs=75.8

Q ss_pred             eEEEE-cCCHHHHHHHhhcCCcccCCcCCCCeeeEEEEecccCCCCcEEEEEeecCCCCCcccchhcccccccccccccc
Q 038195            3 TEVEI-KSPADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSAGDFPATRTEEQTQSSHLRGLHYQWS   81 (172)
Q Consensus         3 ~e~~i-~apa~kvw~~~~d~~~~lpk~~P~~v~sve~~eGd~g~~Gsvr~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~   81 (172)
                      ++..+ .+|++.|++++.|.. ..++|.+. +.++++++-+ ...++ ..+.+....+ .+.+                .
T Consensus        49 ~~~~~~d~s~~~~~~~~~D~~-~r~~Wd~~-~~~~~~le~~-~~~~~-~i~y~~~~~P-~P~s----------------~  107 (207)
T cd08911          49 VYGSFDDVTARDFLNVQLDLE-YRKKWDAT-AVELEVVDED-PETGS-EIIYWEMQWP-KPFA----------------N  107 (207)
T ss_pred             EEEEEcCCCHHHHHHHHhCHH-HHHHHHhh-heeEEEEEcc-CCCCC-EEEEEEEECC-CCCC----------------C
Confidence            34445 899999999999984 78999995 8888999864 22233 2222222222 1110                0


Q ss_pred             cceeeeeEEEEE-ecCCCce--EEEEEEeC-ccc--c---ceeEEEEEEEEEecC----CCcEEEEEEEEEecCCCCCCh
Q 038195           82 QHFVEKMKEKVE-LDPENKT--VAMVVIEG-DLM--K---HFKSYKVIIKVIPKS----EGSLVKWIWEYEKLQEDGPTP  148 (172)
Q Consensus        82 ~~~~~~~kEri~-~D~~~~~--i~Y~vieG-dl~--~---~~~s~~~t~~v~p~~----dGs~v~w~~~ye~~~~~~~~p  148 (172)
                         ..++-.+-. .|+++..  +...-++- ...  +   ...+|.+.+.+.|..    +||.+.++..-++.+  .. |
T Consensus       108 ---RD~V~~r~~~~~~~~~~~~i~~~sv~hp~~P~~~g~VRv~~~~~~~~i~p~~~~~~~~~~~~~~~~~dPgG--~I-P  181 (207)
T cd08911         108 ---RDYVYVRRYIIDEENKLIVIVSKAVQHPSYPESPKKVRVEDYWSYMVIRPHKSFDEPGFEFVLTYFDNPGV--NI-P  181 (207)
T ss_pred             ---ccEEEEEEEEEcCCCCEEEEEEecCCCCCCCCCCCCEEEEEeEEEEEEEeCCCCCCCCeEEEEEEEeCCCC--cc-C
Confidence               234445554 6766543  22222332 111  1   267888999999873    357766544433332  22 3


Q ss_pred             hhhh-----HHHHHHHHHHHHHHh
Q 038195          149 SKYV-----DFVTDLTKNIDAHLL  167 (172)
Q Consensus       149 ~~~~-----~~~~~~~k~ie~yll  167 (172)
                      .-+.     ....++++.|...++
T Consensus       182 ~~lvN~~~~~~~~~~l~~l~~a~~  205 (207)
T cd08911         182 SYITSWVAMSGMPDFLERLRNAAL  205 (207)
T ss_pred             HHHHHHHHHhhccHHHHHHHHHHh
Confidence            3222     244555566655543

This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD7 (also known as gestational trophoblastic tumor 1/GTT1). It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be involved in the intracellular trafficking of phosphatidycholine (PtdCho) to mitochondria. STARD7 was shown to be surface active and to interact differentially with phospholipid monolayers, it showed a preference for phosphatidylserine, cholesterol, and phosphatidylglycerol.

>cd08908 START_STARD12-like C-terminal lipid-binding START domain of mammalian STARD12 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain

Probab=84.11  E-value=22  Score=29.22  Aligned_cols=114  Identities=10%  Similarity=0.067  Sum_probs=69.9

Q ss_pred             eEEEEcCCHHHHHHHhhcCCcccCCcCCCCeeeEEEEecccCCCCcEEEEEeecCCCCCcccchhccccccccccccccc
Q 038195            3 TEVEIKSPADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSAGDFPATRTEEQTQSSHLRGLHYQWSQ   82 (172)
Q Consensus         3 ~e~~i~apa~kvw~~~~d~~~~lpk~~P~~v~sve~~eGd~g~~Gsvr~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~   82 (172)
                      .+++++++++.+.+.+-|.   .++|.+. +.+.++++--.   ..-..+.+.-..+ .+.+                  
T Consensus        56 ~~~~i~a~~~~vl~~lld~---~~~Wd~~-~~e~~vIe~ld---~~~~I~Yy~~~~P-wP~~------------------  109 (204)
T cd08908          56 TTIEVPAAPEEILKRLLKE---QHLWDVD-LLDSKVIEILD---SQTEIYQYVQNSM-APHP------------------  109 (204)
T ss_pred             EEEEeCCCHHHHHHHHHhh---HHHHHHH-hhheEeeEecC---CCceEEEEEccCC-CCCC------------------
Confidence            5789999999999999876   4899986 66777777431   1123333332222 2211                  


Q ss_pred             ceeeeeEEEEE-ecCCCceEEEEEEeC--c-ccc---ceeEEEEEEEEEecCCC-cEEEEEEEEEecCC
Q 038195           83 HFVEKMKEKVE-LDPENKTVAMVVIEG--D-LMK---HFKSYKVIIKVIPKSEG-SLVKWIWEYEKLQE  143 (172)
Q Consensus        83 ~~~~~~kEri~-~D~~~~~i~Y~vieG--d-l~~---~~~s~~~t~~v~p~~dG-s~v~w~~~ye~~~~  143 (172)
                       ...++..|.- .|..+..+.......  + ++.   ....+.+-+.++|.++| |.++..+..++.+.
T Consensus       110 -~RD~V~~Rs~~~~~~~g~~~I~~~Sv~h~~~P~~~VR~~~~~~~w~i~P~g~g~t~vtyi~~~DPgG~  177 (204)
T cd08908         110 -ARDYVVLRTWRTNLPKGACALLATSVDHDRAPVAGVRVNVLLSRYLIEPCGSGKSKLTYMCRIDLRGH  177 (204)
T ss_pred             -CcEEEEEEEEEEeCCCCeEEEEEeecCcccCCcCceEEEEEeeEEEEEECCCCcEEEEEEEEeCCCCC
Confidence             1334555444 444444443333211  1 221   24567888999999877 99999998888875

This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subgroup also have an N-terminal SAM (sterile alpha motif) domain and a RhoGAP domain, and have a SAM-RhoGAP-START domain organization. The precise function of the START domain in this subgroup is unclear.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	172
2i9y_A	166	Solution Structure Of Arabidopsis Thaliana Protein		3e-26

>pdb|2I9Y|A Chain A, Solution Structure Of Arabidopsis Thaliana Protein At1g70830, A Member Of The Major Latex Protein Family Length = 166

Iteration: 1
 Score =  114 bits (285), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 64/172 (37%), Positives = 95/172 (55%), Gaps = 26/172 (15%)
Query: 1   METEVEIKSPADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSAGDFP 60
           +ET+VEIK+ ADKF++ F+ K H V   SPGN+ G ++HEGDW + GS+  W +   D  
Sbjct: 19  LETDVEIKASADKFHHMFAGKPHHVSKASPGNIQGCDLHEGDWGTVGSIVFWNY-VHDGE 77
Query: 61  ATRTEEQTQSSHLRGLHYQWSQHFVEKMKEKVELDPENKTVAMVVIEGDLMKHFKSYKVI 120
           A   +E+ ++                       ++P+   +   VIEGDLMK +KS+ + 
Sbjct: 78  AKVAKERIEA-----------------------VEPDKNLITFRVIEGDLMKEYKSFLLT 114
Query: 121 IKVIPK--SEGSLVKWIWEYEKLQEDGPTPSKYVDFVTDLTKNIDAHLLKEE 170
           I+V PK    GS+V W  EYEK+ E+   P   + F  +++K ID HLL EE
Sbjct: 115 IQVTPKPGGPGSIVHWHLEYEKISEEVAHPETLLQFCVEVSKEIDEHLLAEE 166

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	172
2i9y_A	166	Major latex protein-like protein 28 or MLP-like pr	2e-42
1vjh_A	122	BET V I allergen family; structural genomics, cent	6e-31
2flh_A	155	Cytokinin-specific binding protein; zeatin, pathog	4e-27
4a8u_A	159	Major pollen allergen BET V 1-J; PR-10 protein; 1.	5e-24
1e09_A	159	PRU AV 1; allergen, major cherry allergen, pathoge	1e-23
2vq5_A	201	S-norcoclaurine synthase; lyase, S- norcoclaurine	2e-22
3rws_A	168	MTN13 protein; zeatin, cytokinin, hormone, lucerne	2e-22
1tw0_A	157	Pathogenesis-related class 10 protein SPE-16; seve	4e-22
1icx_A	155	Protein LLR18A, LLPR10.1A; 7-stranded beta sheet,	9e-21
3ie5_A	165	Phenolic oxidative coupling protein HYP-1; hyperic	2e-20
2vjg_A	154	Major allergen DAU C 1; major carrot allergen, pat	2e-19
2qim_A	158	PR10.2B; trans-zeatin, cytokinin, plant hormones,	3e-19
3qrz_A	223	Abscisic acid receptor PYL5; crystal, hormone rece	2e-08

>2i9y_A Major latex protein-like protein 28 or MLP-like protein 28; AT1G70830, BET V1-like, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} Length = 166

 Score =  138 bits (348), Expect = 2e-42
 Identities = 64/173 (36%), Positives = 93/173 (53%), Gaps = 28/173 (16%)

Query: 1   METEVEIKSPADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSAGDFP 60
           +ET+VEIK+ ADKF++ F+ K H V   SPGN+ G ++HEGDW + GS+  W +      
Sbjct: 19  LETDVEIKASADKFHHMFAGKPHHVSKASPGNIQGCDLHEGDWGTVGSIVFWNYVHDGEA 78

Query: 61  ATRTEEQTQSSHLRGLHYQWSQHFVEKMKEKVE-LDPENKTVAMVVIEGDLMKHFKSYKV 119
                                       KE++E ++P+   +   VIEGDLMK +KS+ +
Sbjct: 79  KV-------------------------AKERIEAVEPDKNLITFRVIEGDLMKEYKSFLL 113

Query: 120 IIKVIPKS--EGSLVKWIWEYEKLQEDGPTPSKYVDFVTDLTKNIDAHLLKEE 170
            I+V PK    GS+V W  EYEK+ E+   P   + F  +++K ID HLL EE
Sbjct: 114 TIQVTPKPGGPGSIVHWHLEYEKISEEVAHPETLLQFCVEVSKEIDEHLLAEE 166

>1vjh_A BET V I allergen family; structural genomics, center for eukaryotic structural genomics, protein structure initiative, CESG, plant protein; 2.10A {Arabidopsis thaliana} SCOP: d.129.3.1 PDB: 2q3q_A Length = 122

 Score =  107 bits (269), Expect = 6e-31
 Identities = 35/174 (20%), Positives = 63/174 (36%), Gaps = 61/174 (35%)

Query: 1   METEVEIKSPADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSAGDFP 60
           +  + ++K PADKF++ F                 VE     +E +G             
Sbjct: 7   LSVKFDVKCPADKFFSAF-----------------VEDTNRPFEKNG------------- 36

Query: 61  ATRTEEQTQSSHLRGLHYQWSQHFVEKMKEKVE-LDPENKTVAMVVIEGDLMKHFKSYKV 119
                                       K ++E +D   KT+ + +   ++ K+FK+ K 
Sbjct: 37  ----------------------------KTEIEAVDLVKKTMTIQMSGSEIQKYFKTLKG 68

Query: 120 IIKVIPKS--EGSLVKWIWEYEKLQEDGPTPSKYVDFVTDLTKNIDAHLLKEEQ 171
            I V P    +GS V W + +EK+ +D   P   +D      K +D  +L  ++
Sbjct: 69  SIAVTPIGVGDGSHVVWTFHFEKVHKDIDDPHSIIDESVKYFKKLDEAILNFKE 122

>2flh_A Cytokinin-specific binding protein; zeatin, pathogenesis-related proteins, multiple- ligand binding, plant protein; HET: ZEA; 1.20A {Vigna radiata} PDB: 3c0v_A* Length = 155

 Score = 98.8 bits (246), Expect = 4e-27
 Identities = 32/173 (18%), Positives = 60/173 (34%), Gaps = 32/173 (18%)

Query: 1   METEVEIKSPADKFYNTFSSKAHT-VPNMSPGNLHGVEVHEGDWESHGSVKSWTFSAGDF 59
             T+ E+    +  +   S    T VP + P  +  V++ EGD    G++  + F     
Sbjct: 5   FNTQTELSVRLEALWAVLSKDFITVVPKVLPHIVKDVQLIEGDG-GVGTILIFNFL---- 59

Query: 60  PATRTEEQTQSSHLRGLHYQWSQHFVEKMKEKVE-LDPENKTVAMVVIEGD-LMKHFKSY 117
                                 +      +E++   D  +  + + VIEG  L +    Y
Sbjct: 60  ---------------------PEVSPSYQREEITEFDESSHEIGLQVIEGGYLSQGLSYY 98

Query: 118 KVIIKVIPKSEG-SLVKWIWEYEKLQ--EDGPTPSKYVDFVTDLTKNIDAHLL 167
           K   K+    E  +LV     Y+     E+  TP+K         + ++ +L 
Sbjct: 99  KTTFKLSEIEEDKTLVNVKISYDHDSDIEEKVTPTKTSQSTLMYLRRLERYLS 151

>4a8u_A Major pollen allergen BET V 1-J; PR-10 protein; 1.16A {Betula pendula} PDB: 4a8v_A* 4a87_A* 4a81_A* 4a80_A* 4a83_A* 4a86_A* 4a85_A* 4a88_A 4a8g_A* 1b6f_A 1btv_A 1bv1_A 1fsk_A 4a84_A* 1llt_A 1fm4_A* 3k78_A 1qmr_A Length = 159

 Score = 91.2 bits (226), Expect = 5e-24
 Identities = 32/173 (18%), Positives = 64/173 (36%), Gaps = 33/173 (19%)

Query: 2   ETEVEIKSPADKFYNTFSSKAHTV-PNMSPGNLHGVEVHEGDWESHGSVKSWTFSAGDFP 60
           ETE     PA + +  F      + P ++P  +  VE  EG+    G++K  +F      
Sbjct: 6   ETEATSVIPAARLFKAFILDGDNLFPKVAPQAISSVENIEGNG-GPGTIKKISFP----- 59

Query: 61  ATRTEEQTQSSHLRGLHYQWSQHFVEKMKEKVE-LDPENKTVAMVVIEGD-LMKHFKSYK 118
                                    + +K++V+ +D  N   +  VIEG  +    +   
Sbjct: 60  --------------------EGFPFKYVKDRVDEVDHTNFKYSYSVIEGGPVGDTLEKIS 99

Query: 119 VIIKVIPKSEG-SLVKWIWEYEKLQEDGPTPSK---YVDFVTDLTKNIDAHLL 167
             IK++    G S++K   +Y    +      +     +    L + ++++LL
Sbjct: 100 NEIKIVATPNGGSILKINNKYHTKGDHEVKAEQIKASKEMGETLLRAVESYLL 152

>1e09_A PRU AV 1; allergen, major cherry allergen, pathogenesis-related protein, heteronuclear structure; NMR {Prunus avium} SCOP: d.129.3.1 PDB: 1h2o_A 2lpx_A Length = 159

 Score = 90.1 bits (223), Expect = 1e-23
 Identities = 35/173 (20%), Positives = 63/173 (36%), Gaps = 33/173 (19%)

Query: 2   ETEVEIKSPADKFYNTFSSKAHTV-PNMSPGNLHGVEVHEGDWESHGSVKSWTFSAGDFP 60
           E+E   + P  + +  F   A  + P ++P  +   E+ EGD    G++K  TF  G   
Sbjct: 6   ESEFTSEIPPPRLFKAFVLDADNLVPKIAPQAIKHSEILEGDG-GPGTIKKITFGEGSQY 64

Query: 61  ATRTEEQTQSSHLRGLHYQWSQHFVEKMKEKVE-LDPENKTVAMVVIEGD-LMKHFKSYK 118
                                      +K K++ +D EN + +  +IEGD L    +   
Sbjct: 65  GY-------------------------VKHKIDSIDKENYSYSYTLIEGDALGDTLEKIS 99

Query: 119 VIIKVIPKSEG-SLVKWIWEYEKLQEDGPTPSK---YVDFVTDLTKNIDAHLL 167
              K++    G S++K    Y                 +  ++L K I+ +L 
Sbjct: 100 YETKLVASPSGGSIIKSTSHYHTKGNVEIKEEHVKAGKEKASNLFKLIETYLK 152

>2vq5_A S-norcoclaurine synthase; lyase, S- norcoclaurine biosynthesis, dopamine, hydroxybenzaldehyde; HET: MSE LDP HBA; 2.09A {Thalictrum flavum} PDB: 2vne_A* Length = 201

 Score = 87.8 bits (217), Expect = 2e-22
 Identities = 36/175 (20%), Positives = 63/175 (36%), Gaps = 34/175 (19%)

Query: 1   METEVEIKSPADKFYNTFSSK--AHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSAGD 58
           +  E+E+ + AD  +  +S    A  +P++ PG    +E+  GD    G++   TF    
Sbjct: 31  IHHELEVAASADDIWTVYSWPGLAKHLPDLLPGAFEKLEI-IGD-GGVGTILDMTFV--- 85

Query: 59  FPATRTEEQTQSSHLRGLHYQWSQHFVEKMKEKVE-LDPENKTVAMVVIEGD-LMKHFKS 116
                                    F  + KEK   +D E++   + +IEG  L      
Sbjct: 86  ----------------------PGEFPHEYKEKFILVDNEHRLKKVQMIEGGYLDLGVTY 123

Query: 117 YKVIIKVIPKSEG-SLVKWIWEYEKLQE--DGPTPSKYVDFVTDLTKNIDAHLLK 168
           Y   I V+P  +   ++K   EY    E      P      +  +   I   +L+
Sbjct: 124 YMDTIHVVPTGKDSCVIKSSTEYHVKPEFVKIVEPLITTGPLAAMADAISKLVLE 178

>1tw0_A Pathogenesis-related class 10 protein SPE-16; seven antiparallel beta-sheet, plant protein; 2.20A {Pachyrhizus erosus} SCOP: d.129.3.1 PDB: 1txc_A* Length = 157

 Score = 86.2 bits (213), Expect = 4e-22
 Identities = 26/172 (15%), Positives = 55/172 (31%), Gaps = 32/172 (18%)

Query: 2   ETEVEIKSPADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSAGDFPA 61
             E        K Y   +  + T+     G +  +E+ EG+    G++K  T +      
Sbjct: 6   RDETSSSVAPAKLYKALTKDSDTIAQKIDGPIQSIELVEGNG-GVGTIKKITAN------ 58

Query: 62  TRTEEQTQSSHLRGLHYQWSQHFVEKMKEKVE-LDPENKTVAMVVIEGD-LMKHFKSYKV 119
                                     + +KV+ +D  N      ++ G  L +  +    
Sbjct: 59  -------------------EGDKTSFVLQKVDAIDEANLGYDYSIVGGTGLPESLEKLSF 99

Query: 120 IIKVIPKSE-GSLVKWIWEYEKLQEDGPTPSK---YVDFVTDLTKNIDAHLL 167
             KV+  S  GS+ K   ++    +   + +     +       K I+ ++L
Sbjct: 100 ETKVVAGSGGGSISKVTLKFHTKGDAPLSDAVRDDALAKGAGFFKAIEGYVL 151

>1icx_A Protein LLR18A, LLPR10.1A; 7-stranded beta sheet, C-terminal helix, allergen; 1.95A {Lupinus luteus} SCOP: d.129.3.1 PDB: 1ifv_A Length = 155

 Score = 82.4 bits (203), Expect = 9e-21
 Identities = 26/171 (15%), Positives = 53/171 (30%), Gaps = 31/171 (18%)

Query: 2   ETEVEIKSPADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSAGDFPA 61
           E E        K Y   +  +  +       +  VE+ EG+    G++K          +
Sbjct: 6   ENEQSSTVAPAKLYKALTKDSDEIVPKVIEPIQSVEIVEGN-GGPGTIKKIIAIHDGHTS 64

Query: 62  TRTEEQTQSSHLRGLHYQWSQHFVEKMKEKV-ELDPENKTVAMVVIEGD-LMKHFKSYKV 119
                                     +  K+  +D  N T    +I G+ L +  +    
Sbjct: 65  F-------------------------VLHKLDAIDEANLTYNYSIIGGEGLDESLEKISY 99

Query: 120 IIKVIPKSE-GSLVKWIWEYEKLQEDGPTPS--KYVDFVTDLTKNIDAHLL 167
             K++P  + GS+ K   ++    +        +       L K I+ ++L
Sbjct: 100 ESKILPGPDGGSIGKINVKFHTKGDVLSETVRDQAKFKGLGLFKAIEGYVL 150

>3ie5_A Phenolic oxidative coupling protein HYP-1; hypericin, ST JOHN'S WORT, depression, allergy, PR-10 protein, cytokinin, plant hormones; HET: PGE PG4 PE8 1PE; 1.69A {Hypericum perforatum} Length = 165

 Score = 82.0 bits (202), Expect = 2e-20
 Identities = 30/172 (17%), Positives = 47/172 (27%), Gaps = 32/172 (18%)

Query: 2   ETEVEIKSPADKFYNTFSSKAHTV-PNMSPGNLHGVEVHEGDWESHGSVKSWTFSAGDFP 60
             E E      + +     + H V     P      E+ EGD    G+V   TF      
Sbjct: 13  VKEEESPIAPHRLFKALVLERHQVLVKAQPHVFKSGEIIEGDG-GVGTVTKITFV----- 66

Query: 61  ATRTEEQTQSSHLRGLHYQWSQHFVEKMKEKV-ELDPENKTVAMVVIEGD-LMKHFKSYK 118
                                 H +  M  K  E+D  N      + EGD L  + +   
Sbjct: 67  --------------------DGHPLTYMLHKFDEIDAANFYCKYTLFEGDVLRDNIEKVV 106

Query: 119 VIIKVIPKSEGSLVKWIWEYEKLQEDGPTPSK---YVDFVTDLTKNIDAHLL 167
             +K+     GS  K    Y           +         +  K ++ +L 
Sbjct: 107 YEVKLEAVGGGSKGKITVTYHPKPGCTVNEEEVKIGEKKAYEFYKQVEEYLA 158

>2qim_A PR10.2B; trans-zeatin, cytokinin, plant hormones, plant protein, PR-1 protein, pathogenesis-related protein, allergen; HET: ZEA; 1.35A {Lupinus luteus} PDB: 3e85_A* 1xdf_A* 2k7h_A Length = 158

 Score = 78.6 bits (193), Expect = 3e-19
 Identities = 28/172 (16%), Positives = 53/172 (30%), Gaps = 32/172 (18%)

Query: 2   ETEVEIKSPADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSAGDFPA 61
           + E        K Y    + A  +   +   +  VE+ EG+    G++K  TF  G    
Sbjct: 7   QDEYTSTIAPAKLYKALVTDADIIIPKAVETIQSVEIVEGN-GGPGTIKKLTFIEGGESK 65

Query: 62  TRTEEQTQSSHLRGLHYQWSQHFVEKMKEKVE-LDPENKTVAMVVIEGD-LMKHFKSYKV 119
                                     +  K+E +D  N      ++ G  L    +    
Sbjct: 66  Y-------------------------VLHKIEAIDEANLGYNYSIVGGVGLPDTIEKISF 100

Query: 120 IIKVIPKSEG-SLVKWIWEYEKLQEDGPTPSK---YVDFVTDLTKNIDAHLL 167
             K++  + G S+ K   + E   +  P   +            K I+++L 
Sbjct: 101 ETKLVEGANGGSIGKVTIKIETKGDAQPNEEEGKAAKARGDAFFKAIESYLS 152

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	172
4a8u_A	159	Major pollen allergen BET V 1-J; PR-10 protein; 1.	100.0
2wql_A	154	Major allergen DAU C 1; pathogenesis-related prote	100.0
2vjg_A	154	Major allergen DAU C 1; major carrot allergen, pat	100.0
3ie5_A	165	Phenolic oxidative coupling protein HYP-1; hyperic	100.0
3rws_A	168	MTN13 protein; zeatin, cytokinin, hormone, lucerne	100.0
2i9y_A	166	Major latex protein-like protein 28 or MLP-like pr	100.0
1tw0_A	157	Pathogenesis-related class 10 protein SPE-16; seve	100.0
1e09_A	159	PRU AV 1; allergen, major cherry allergen, pathoge	100.0
2flh_A	155	Cytokinin-specific binding protein; zeatin, pathog	100.0
1icx_A	155	Protein LLR18A, LLPR10.1A; 7-stranded beta sheet,	100.0
2qim_A	158	PR10.2B; trans-zeatin, cytokinin, plant hormones,	100.0
2vq5_A	201	S-norcoclaurine synthase; lyase, S- norcoclaurine	100.0
1vjh_A	122	BET V I allergen family; structural genomics, cent	99.96
3jrs_A	208	PYL1, putative uncharacterized protein AT5G46790;	99.95
3kl1_A	190	PYL2, putative uncharacterized protein AT2G26040;	99.94
3rt2_A	183	Abscisic acid receptor PYL10; ABA-independent PP2C	99.94
3k3k_A	211	Abscisic acid receptor PYR1; ABA receptor, plant h	99.94
3oqu_A	205	Abscisic acid receptor PYL9; RCAR1, hormone recept	99.93
3p51_A	160	Uncharacterized protein; structural genomics, PSI-	99.93
3f08_A	146	Uncharacterized protein Q6HG14; NESG Q6HG14_bachk	99.92
3oji_A	189	Abscisic acid receptor PYL3; crystal, PP2C, pyraba	99.9
3qrz_A	223	Abscisic acid receptor PYL5; crystal, hormone rece	99.9
2le1_A	151	Uncharacterized protein; structural genomics, nort	99.88
2d4r_A	147	Hypothetical protein TTHA0849; start domain, struc	99.56
3tl1_A	159	WHIE ORF VI, polyketide cyclase; helix-GRIP fold,	99.51
3tvq_A	169	Multifunctional cyclase-dehydratase-3-O-methyl TR	99.48
3tfz_A	172	Cyclase; helix-GRIP, BET V1-like superfamily, bios	99.41
1t17_A	148	Conserved hypothetical protein; beta-alpha-beta-BE	99.33
3ijt_A	155	SMU.440, putative uncharacterized protein; hypothe	99.24
2pcs_A	162	Conserved protein; structural genomics, unknown fu	99.16
2ns9_A	157	Hypothetical protein APE2225; uncharacterized cons	99.14
3ggn_A	155	Uncharacterized protein DR_A0006; structural genom	98.99
3p9v_A	161	Uncharacterized protein; structural genomics, PSI-	98.97
1z94_A	147	Conserved hypothetical protein; NESG, CV1439, stru	98.77
2lcg_A	142	Uncharacterized protein; start domain, structural	98.64
2leq_A	146	Uncharacterized protein; start domains, structural	98.6
1xn6_A	143	Hypothetical protein BC4709; structural genomics,	98.51
1xuv_A	178	Hypothetical protein MM0500; alpha-beta protein, n	98.46
2il5_A	171	Hypothetical protein; structural genomics, APC2365	98.45
2l8o_A	144	Uncharacterized protein; mixed alpha-beta protein,	98.38
3rd6_A	161	MLL3558 protein; structural genomics, PSI-biology,	98.38
3put_A	166	Hypothetical conserved protein; structural genomic	98.38
2ldk_A	172	Uncharacterized protein; structural genomics, nort	98.36
2lgh_A	144	Uncharacterized protein; AHSA1, start domain, COG3	98.34
3pu2_A	164	Uncharacterized protein; SRPBCC superfamily, PSI-b	98.31
1xfs_A	178	NC_840354, conserved hypothetical protein; structu	98.3
3q64_A	162	MLL3774 protein; structural genomics, PSI-biology,	98.28
3q6a_A	135	Uncharacterized protein; structural genomics, PSI-	98.25
2lak_A	160	AHSA1-like protein RHE_CH02687; NESG, structural g	98.23
1xn5_A	146	BH1534 unknown conserved protein; structural genom	98.22
2lf2_A	175	Uncharacterized protein; NESG, structural genomics	98.08
3uid_A	168	Putative uncharacterized protein; SRPBCC superfami	98.07
2l9p_A	164	Uncharacterized protein; structural genomics, nort	98.04
2qpv_A	156	Uncharacterized protein ATU1531; structural genomi	98.04
3eli_A	152	AHSA1, AHA1 domain protein; alpha-beta protein, st	97.97
2kew_A	152	Uncharacterized protein YNDB; start domain, resona	97.95
3q63_A	151	MLL2253 protein; structural genomics, PSI-biology,	97.93
2nn5_A	184	Hypothetical protein EF_2215; structural genomics,	97.89
2k5g_A	191	Uncharacterized protein; structural genomiccs, pro	97.72
3qsz_A	189	STAR-related lipid transfer protein; structural ge	97.58
3ni8_A	158	PFC0360W protein; heat shock, malaria, ATPase, str	97.54
1x53_A	145	Activator of 90 kDa heat shock protein ATPase homo	97.5
4fpw_A	181	CALU16; structural genomics, PSI-biology, northeas	97.25
3oh8_A	516	Nucleoside-diphosphate sugar epimerase (SULA FAMI;	97.23
2luz_A	192	CALU16; structural genomics, northeast structural	96.91
1ln1_A	214	PC-TP, phosphatidylcholine transfer protein; start	96.88
1zxf_A	155	CALC; SELF-sacrificing resistance protein, structu	96.29
2lio_A	136	Uncharacterized protein; structural genomics, nort	95.69
2ffs_A	157	Hypothetical protein PA1206; 7-stranded beta sheet	95.52
2e3n_A	255	Lipid-transfer protein CERT; ceramide transfer, li	91.4
3fo5_A	258	Thioesterase, adipose associated, isoform BFIT2; o	90.8
3p0l_A	221	Steroidogenic acute regulatory protein, mitochond;	89.44
1em2_A	229	MLN64 protein; beta barrel, lipid binding protein;	88.6
2pso_A	237	STAR-related lipid transfer protein 13; alpha and	85.36
1jss_A	224	Stard4, cholesterol-regulated start protein 4; sta	82.78

>4a8u_A Major pollen allergen BET V 1-J; PR-10 protein; 1.16A {Betula pendula} PDB: 4a8v_A* 4a87_A* 4a81_A* 4a80_A* 4a83_A* 4a86_A* 4a85_A* 4a88_A 4a8g_A* 1b6f_A 1btv_A 1bv1_A 1fsk_A 4a84_A* 1llt_A 1fm4_A* 3k78_A 1qmr_A

Probab=100.00  E-value=1.7e-42  Score=271.94  Aligned_cols=144  Identities=23%  Similarity=0.391  Sum_probs=133.2

Q ss_pred             ceEEEEcCCHHHHHHHh-hcCCcccCCcCCCCeeeEEEEecccCCCCcEEEEEeecCCCCCcccchhccccccccccccc
Q 038195            2 ETEVEIKSPADKFYNTF-SSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSAGDFPATRTEEQTQSSHLRGLHYQW   80 (172)
Q Consensus         2 ~~e~~i~apa~kvw~~~-~d~~~~lpk~~P~~v~sve~~eGd~g~~Gsvr~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~   80 (172)
                      +.|++|+|||+++|+++ +|+.+++|+|+|++|++|+++||| |++||||+|+|.+|++                     
T Consensus         6 ~~ei~i~a~a~kvw~~~~~d~~~l~pk~~P~~i~s~e~~eGd-gg~Gsir~~~~~~g~~---------------------   63 (159)
T 4a8u_A            6 ETEATSVIPAARLFKAFILDGDNLFPKVAPQAISSVENIEGN-GGPGTIKKISFPEGFP---------------------   63 (159)
T ss_dssp             EEEEEESSCHHHHHHHHTTTHHHHHHHHCTTTCCEEEEEECS-SSTTCEEEEECCTTSS---------------------
T ss_pred             EEEEEecCCHHHHHHHHhcCccccchhhCchhccEEEEEcCC-CCCceEEEEEEecCCC---------------------
Confidence            68999999999999999 898767899999999999999999 5899999999999887                     


Q ss_pred             ccceeeeeEEEEE-ecCCCceEEEEEEeCccc-cceeEEEEEEEEEecCCC-cEEEEEEEEEecCCCCCChhhh---hHH
Q 038195           81 SQHFVEKMKEKVE-LDPENKTVAMVVIEGDLM-KHFKSYKVIIKVIPKSEG-SLVKWIWEYEKLQEDGPTPSKY---VDF  154 (172)
Q Consensus        81 ~~~~~~~~kEri~-~D~~~~~i~Y~vieGdl~-~~~~s~~~t~~v~p~~dG-s~v~w~~~ye~~~~~~~~p~~~---~~~  154 (172)
                          .+++||||+ +|+++|+|+|+++|||++ ..|++|+++++|.|.++| |+|+|+++|++.++..++|+.+   +++
T Consensus        64 ----~~~~kErl~~iD~~~~~~~y~iiegd~l~~~~~~y~~ti~v~p~~~ggs~v~wt~~y~~~~~~~~~~~~~k~~~~~  139 (159)
T 4a8u_A           64 ----FKYVKDRVDEVDHTNFKYSYSVIEGGPVGDTLEKISNEIKIVATPNGGSILKINNKYHTKGDHEVKAEQIKASKEM  139 (159)
T ss_dssp             ----CSEEEEEEEEEETTTTEEEEEEEEETTCBTTEEEEEEEEEEEECTTSCEEEEEEEEEEESSSCCC-CHHHHHHHHH
T ss_pred             ----ccEEEEEEEEEccccCEEEEEEeeCCCCccceEEEEEEEEEEECCCCceEEEEEEEEEECCCCcCCHHHHHHHHHH
Confidence                678999999 999999999999999954 679999999999998876 9999999999999998888865   789


Q ss_pred             HHHHHHHHHHHHhhccC
Q 038195          155 VTDLTKNIDAHLLKEEQ  171 (172)
Q Consensus       155 ~~~~~k~ie~ylla~~~  171 (172)
                      +.+|+|+||+||++||.
T Consensus       140 ~~~~~k~ie~yll~np~  156 (159)
T 4a8u_A          140 GETLLRAVESYLLAHSD  156 (159)
T ss_dssp             HHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHhhChh
Confidence            99999999999999996

>2wql_A Major allergen DAU C 1; pathogenesis-related protein, plant defense; HET: P4C; 2.70A {Daucus carota} PDB: 2bk0_A

Probab=100.00  E-value=1.1e-41  Score=266.74  Aligned_cols=142  Identities=23%  Similarity=0.341  Sum_probs=130.2

Q ss_pred             CceEEEEcCCHHHHHHHh-hcCCcccCCcCCCCeeeEEEEecccCCCCcEEEEEeecCCCCCcccchhcccccccccccc
Q 038195            1 METEVEIKSPADKFYNTF-SSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSAGDFPATRTEEQTQSSHLRGLHYQ   79 (172)
Q Consensus         1 ~~~e~~i~apa~kvw~~~-~d~~~~lpk~~P~~v~sve~~eGd~g~~Gsvr~~~~~~gg~~~~~~~~~~~~~~~~~~~~~   79 (172)
                      ++.|+++++||+|+|+++ .|+.+++|||+|++++|++ ++|| |++||||+|+|.+|++                    
T Consensus         6 ~~~E~~~~v~a~kl~ka~v~d~~~l~Pk~~P~~iks~~-veGd-g~~Gsir~~t~~~g~~--------------------   63 (154)
T 2wql_A            6 HSLEITSSVSAEKIFSGIVLDVDTVIPKAATGAYKSVE-VKGD-GGAGTVRIITLPEGSP--------------------   63 (154)
T ss_dssp             EEEEEEESSCHHHHHHHHTTTHHHHHHHHSTTTCSEEE-EESS-SSTTCEEEEECCTTCS--------------------
T ss_pred             EEEEEEecCCHHHHHHHHhhcccccchhhcccceeEEE-EECC-CCCCeEEEEEEcCCCC--------------------
Confidence            368999999999999876 5665578999999999999 6999 6899999999999988                    


Q ss_pred             cccceeeeeEEEEE-ecCCCceEEEEEEeCc-cccceeEEEEEEEEEecCCC-cEEEEEEEEEecCCCCCChhhhhH---
Q 038195           80 WSQHFVEKMKEKVE-LDPENKTVAMVVIEGD-LMKHFKSYKVIIKVIPKSEG-SLVKWIWEYEKLQEDGPTPSKYVD---  153 (172)
Q Consensus        80 ~~~~~~~~~kEri~-~D~~~~~i~Y~vieGd-l~~~~~s~~~t~~v~p~~dG-s~v~w~~~ye~~~~~~~~p~~~~~---  153 (172)
                           .+++||||+ +|+++|+|+|++|||| ++..|++|+++++|+|+++| |+++|+++|+++++..++|+.+++   
T Consensus        64 -----~~~~kErle~iD~~~~~~~y~iieGd~l~~~~~~~~~~ikv~p~~~ggsvvk~t~~Y~~~~~~~~~ee~~~~~~~  138 (154)
T 2wql_A           64 -----ITTMTVRTDAVNKEALSYDSTVIDGDILLGFIESIETHMVVVPTADGGSITKTTAIFHTKGDAVVPEENIKFADA  138 (154)
T ss_dssp             -----CCEEEEEEEEEETTTTEEEEEEEESGGGTTTEEEEEEEEEEEECTTSCEEEEEEEEEEESTTCCCCHHHHHHHHH
T ss_pred             -----ceEEEEEEEEEehhhCEEEEEEEeccccccceEEEEEEEEEeeCCCCcEEEEEEEEEEECCCCCCCHHHHHHHHH
Confidence                 788999999 9999999999999999 66789999999999999987 999999999999999999988765   


Q ss_pred             HHHHHHHHHHHHHhhc
Q 038195          154 FVTDLTKNIDAHLLKE  169 (172)
Q Consensus       154 ~~~~~~k~ie~ylla~  169 (172)
                      .+.++||+||+|||||
T Consensus       139 ~~~~~~KaiEayLlan  154 (154)
T 2wql_A          139 QNTALFKAIEAYLIAN  154 (154)
T ss_dssp             HHHHHHHHHHHHHHHC
T ss_pred             HHHhHHHHHHHHHhcC
Confidence            4789999999999997

>3ie5_A Phenolic oxidative coupling protein HYP-1; hypericin, ST JOHN'S WORT, depression, allergy, PR-10 protein, cytokinin, plant hormones; HET: PGE PG4 PE8 1PE; 1.69A {Hypericum perforatum} SCOP: d.129.3.0

Probab=100.00  E-value=1.4e-41  Score=268.87  Aligned_cols=145  Identities=18%  Similarity=0.244  Sum_probs=132.7

Q ss_pred             CceEEEEcCCHHHHHHHh-hcCCcccCCcCCCCeeeEEEEecccCCCCcEEEEEeecCCCCCcccchhcccccccccccc
Q 038195            1 METEVEIKSPADKFYNTF-SSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSAGDFPATRTEEQTQSSHLRGLHYQ   79 (172)
Q Consensus         1 ~~~e~~i~apa~kvw~~~-~d~~~~lpk~~P~~v~sve~~eGd~g~~Gsvr~~~~~~gg~~~~~~~~~~~~~~~~~~~~~   79 (172)
                      ++.|++|+|||+++|+++ +|+.+++|+|+|++|++|+++||| |++||||+|+|.+|++                    
T Consensus        12 ~~~ev~i~a~a~kvw~~~v~d~~~l~pk~~P~~v~s~e~~eGd-g~~Gsir~~~~~~g~~--------------------   70 (165)
T 3ie5_A           12 IVKEEESPIAPHRLFKALVLERHQVLVKAQPHVFKSGEIIEGD-GGVGTVTKITFVDGHP--------------------   70 (165)
T ss_dssp             EEEEEEESSCHHHHHHHHTTTHHHHHHHHCTTTEEEEEEEESS-SSTTCEEEEEECTTSS--------------------
T ss_pred             EEEEEEecCCHHHHHHHhcCCccccchhhCCcccceEEEecCC-CCCCeEEEEEecCCCC--------------------
Confidence            368999999999999995 888666799999999999999999 7999999999998887                    


Q ss_pred             cccceeeeeEEEEE-ecCCCceEEEEEEeCccc-cceeEEEEEEEEEecCCCcEEEEEEEEEecCCCCCChhhh---hHH
Q 038195           80 WSQHFVEKMKEKVE-LDPENKTVAMVVIEGDLM-KHFKSYKVIIKVIPKSEGSLVKWIWEYEKLQEDGPTPSKY---VDF  154 (172)
Q Consensus        80 ~~~~~~~~~kEri~-~D~~~~~i~Y~vieGdl~-~~~~s~~~t~~v~p~~dGs~v~w~~~ye~~~~~~~~p~~~---~~~  154 (172)
                           ++++||||+ +|+++|+|+|+++|||++ ..|++|+++++|.+.++||+|+|+++|+++++..++|+.+   +++
T Consensus        71 -----~~~~kErl~~iD~~~~~~~Y~iieG~~l~~~~~~y~~~i~v~~~~ggs~vkwt~~y~~~~~~~~~~e~~k~~~~~  145 (165)
T 3ie5_A           71 -----LTYMLHKFDEIDAANFYCKYTLFEGDVLRDNIEKVVYEVKLEAVGGGSKGKITVTYHPKPGCTVNEEEVKIGEKK  145 (165)
T ss_dssp             -----CCEEEEEEEEEEGGGTEEEEEEEEEGGGTTTEEEEEEEEEEEEETTEEEEEEEEEEEECTTCCCCHHHHHHHHHH
T ss_pred             -----CceEEEEEEEEchhcCEEEEEEecCCCCccceEEEEEEEEEEeCCCceEEEEEEEEEECCCCCCCHHHHHHHHHH
Confidence                 778999999 999999999999999955 6899999999999544459999999999999999999876   689


Q ss_pred             HHHHHHHHHHHHhhccC
Q 038195          155 VTDLTKNIDAHLLKEEQ  171 (172)
Q Consensus       155 ~~~~~k~ie~ylla~~~  171 (172)
                      +.+|+|+||+||++||.
T Consensus       146 ~~~~~K~ie~yllanp~  162 (165)
T 3ie5_A          146 AYEFYKQVEEYLAANPE  162 (165)
T ss_dssp             HHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHHhChh
Confidence            99999999999999996

>2i9y_A Major latex protein-like protein 28 or MLP-like protein 28; AT1G70830, BET V1-like, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}

Probab=100.00  E-value=1.2e-40  Score=262.45  Aligned_cols=145  Identities=44%  Similarity=0.839  Sum_probs=134.9

Q ss_pred             CceEEEEcCCHHHHHHHhhcCCcccCCcCCCCeeeEEEEecccCCCCcEEEEEeecCCCCCcccchhccccccccccccc
Q 038195            1 METEVEIKSPADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSAGDFPATRTEEQTQSSHLRGLHYQW   80 (172)
Q Consensus         1 ~~~e~~i~apa~kvw~~~~d~~~~lpk~~P~~v~sve~~eGd~g~~Gsvr~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~   80 (172)
                      ++++++|+|||++||+++.+..+.+|+|+|+.|++|+++|||||++||||.|+|..|++                     
T Consensus        19 ~~~ev~i~apa~kvw~~~~~d~~~lpk~~P~~i~s~~~~eGd~gg~Gsir~~~~~~gg~---------------------   77 (166)
T 2i9y_A           19 LETDVEIKASADKFHHMFAGKPHHVSKASPGNIQGCDLHEGDWGTVGSIVFWNYVHDGE---------------------   77 (166)
T ss_dssp             EEEEEEESSCHHHHHGGGSSCSSCCCCSCSSCCSSCCCCSCCSCSTTCCCEEEEEETTE---------------------
T ss_pred             EEEEEEecCCHHHHHHHHhcccccccccccccceEEEEEcCCCCCCCeEEEEEEecCCC---------------------
Confidence            36899999999999999764446899999988999999999988999999999999887                     


Q ss_pred             ccceeeeeEEEEE-ecCCCceEEEEEEeCccccceeEEEEEEEEEec--CCCcEEEEEEEEEecCCCCCChhhhhHHHHH
Q 038195           81 SQHFVEKMKEKVE-LDPENKTVAMVVIEGDLMKHFKSYKVIIKVIPK--SEGSLVKWIWEYEKLQEDGPTPSKYVDFVTD  157 (172)
Q Consensus        81 ~~~~~~~~kEri~-~D~~~~~i~Y~vieGdl~~~~~s~~~t~~v~p~--~dGs~v~w~~~ye~~~~~~~~p~~~~~~~~~  157 (172)
                          ++++|||++ +|+++++|+|+++|||+++.|++|+++++|.|.  ++||+|+|+++|++.++..++|+.+++++..
T Consensus        78 ----~~~~kErl~~iD~~~~~~~y~iieGd~~~~~~~~~~ti~v~p~~~g~gs~v~wt~~ye~~~~~~~~p~~~~~~~~~  153 (166)
T 2i9y_A           78 ----AKVAKERIEAVEPDKNLITFRVIEGDLMKEYKSFLLTIQVTPKPGGPGSIVHWHLEYEKISEEVAHPETLLQFCVE  153 (166)
T ss_dssp             ----EEEEEEEEEEEETTTTEEEEEECCTTGGGTEEEEEEEEEEEEEEETTEEEEEEEEEEEESSTTTCCTHHHHHHHHH
T ss_pred             ----ceEEEEEEEEEeccCcEEEEEEEeCCCCCCeeEEEEEEEEEECCCCCCcEEEEEEEEEECCCCCCCHHHHHHHHHH
Confidence                788999999 999999999999999987789999999999998  4469999999999999999999999999999


Q ss_pred             HHHHHHHHHhhcc
Q 038195          158 LTKNIDAHLLKEE  170 (172)
Q Consensus       158 ~~k~ie~ylla~~  170 (172)
                      |+|+||+||+++|
T Consensus       154 ~~k~ie~~l~~~~  166 (166)
T 2i9y_A          154 VSKEIDEHLLAEE  166 (166)
T ss_dssp             HHHHHHHHHHSCC
T ss_pred             HHHHHHHHHhhCC
Confidence            9999999999986

>1tw0_A Pathogenesis-related class 10 protein SPE-16; seven antiparallel beta-sheet, plant protein; 2.20A {Pachyrhizus erosus} SCOP: d.129.3.1 PDB: 1txc_A*

Probab=100.00  E-value=1.6e-39  Score=253.57  Aligned_cols=144  Identities=17%  Similarity=0.275  Sum_probs=132.6

Q ss_pred             CceEEEEcCCHHHHHHHhh-cCCcccCCcCCCCeeeEEEEecccCCCCcEEEEEeecCCCCCcccchhcccccccccccc
Q 038195            1 METEVEIKSPADKFYNTFS-SKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSAGDFPATRTEEQTQSSHLRGLHYQ   79 (172)
Q Consensus         1 ~~~e~~i~apa~kvw~~~~-d~~~~lpk~~P~~v~sve~~eGd~g~~Gsvr~~~~~~gg~~~~~~~~~~~~~~~~~~~~~   79 (172)
                      ++.+++|+|||+++|++++ |+.+++|+|+| .|++|+++||| |++||||.|+|.+|++                    
T Consensus         5 ~~~e~~i~a~a~kvw~~~~~d~~~~~pk~~~-~i~s~~i~eG~-g~~Gsir~~~~~~G~~--------------------   62 (157)
T 1tw0_A            5 FRDETSSSVAPAKLYKALTKDSDTIAQKIDG-PIQSIELVEGN-GGVGTIKKITANEGDK--------------------   62 (157)
T ss_dssp             EEEEEEESSCHHHHHHHHHHTGGGGGGGSCS-SEEEEEEEESS-SSTTCEEEEEEEETTE--------------------
T ss_pred             EEEEEEecCCHHHHHHHHhcCcchhhhhHHh-hccEEEEEeCC-CCCCeEEEEEeeCCCc--------------------
Confidence            3689999999999999999 99778999995 79999999999 5899999999997655                    


Q ss_pred             cccceeeeeEEEEE-ecCCCceEEEEEEeCccc-cceeEEEEEEEEEecCC-CcEEEEEEEEEecCCCCCChhhh---hH
Q 038195           80 WSQHFVEKMKEKVE-LDPENKTVAMVVIEGDLM-KHFKSYKVIIKVIPKSE-GSLVKWIWEYEKLQEDGPTPSKY---VD  153 (172)
Q Consensus        80 ~~~~~~~~~kEri~-~D~~~~~i~Y~vieGdl~-~~~~s~~~t~~v~p~~d-Gs~v~w~~~ye~~~~~~~~p~~~---~~  153 (172)
                           ++++|||++ +|+++|+|+|+++|||++ +.|++|+++++|.|.++ ||+|+|+++|++.++..++|+.+   ++
T Consensus        63 -----~~~~kErl~~~D~~~~~~~y~iieGd~~~~~~~~~~~~~~v~~~~~~gs~v~w~~~y~~~~~~~~~~~~~~~~~~  137 (157)
T 1tw0_A           63 -----TSFVLQKVDAIDEANLGYDYSIVGGTGLPESLEKLSFETKVVAGSGGGSISKVTLKFHTKGDAPLSDAVRDDALA  137 (157)
T ss_dssp             -----EEEEEEEEEEEETTTTEEEEEEEECTTSCTTEEEEEEEEEEEECSSSSEEEEEEEEEEESTTCCCCHHHHHHHHH
T ss_pred             -----cceEEEEEEEEeccCCEEEEEEEecCCCccceEEEEEEEEEEecCCCCEEEEEEEEEEECCCCCCCHHHHHHHHH
Confidence                 678999999 999999999999999954 47999999999999976 59999999999999998899888   78


Q ss_pred             HHHHHHHHHHHHHhhccC
Q 038195          154 FVTDLTKNIDAHLLKEEQ  171 (172)
Q Consensus       154 ~~~~~~k~ie~ylla~~~  171 (172)
                      .+.+|+|+||+||++||.
T Consensus       138 ~~~~~~k~ie~yll~~p~  155 (157)
T 1tw0_A          138 KGAGFFKAIEGYVLANPA  155 (157)
T ss_dssp             HHHHHHHHHHHHHHHCGG
T ss_pred             HHHHHHHHHHHHHHhCcc
Confidence            999999999999999995

>1e09_A PRU AV 1; allergen, major cherry allergen, pathogenesis-related protein, heteronuclear structure; NMR {Prunus avium} SCOP: d.129.3.1 PDB: 1h2o_A 2lpx_A

Probab=100.00  E-value=6.7e-40  Score=256.03  Aligned_cols=145  Identities=23%  Similarity=0.393  Sum_probs=133.1

Q ss_pred             CceEEEEcCCHHHHHHHhh-cCCcccCCcCCCCeeeEEEEecccCCCCcEEEEEeecCCCCCcccchhcccccccccccc
Q 038195            1 METEVEIKSPADKFYNTFS-SKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSAGDFPATRTEEQTQSSHLRGLHYQ   79 (172)
Q Consensus         1 ~~~e~~i~apa~kvw~~~~-d~~~~lpk~~P~~v~sve~~eGd~g~~Gsvr~~~~~~gg~~~~~~~~~~~~~~~~~~~~~   79 (172)
                      ++.+++|+|||+++|++++ |+.+++|+|+|+.|++|+++||| |++||||.|+|.+|.+                    
T Consensus         5 ~~~e~~i~ap~~~vw~~~~~d~~~~~pk~~P~~i~s~~~~eGd-gg~Gsvr~~~~~~G~~--------------------   63 (159)
T 1e09_A            5 YESEFTSEIPPPRLFKAFVLDADNLVPKIAPQAIKHSEILEGD-GGPGTIKKITFGEGSQ--------------------   63 (159)
T ss_dssp             EEEEEEESSCHHHHHHHHTTTHHHHHHHHCTTTEEEEEEEESS-SSTTCEEEEEECCSSS--------------------
T ss_pred             EEEEEEecCCHHHHHHHHhcCccccchhhChhhccEEEEEeCC-CCCceEEEEEecCCCC--------------------
Confidence            3689999999999999999 88668899999889999999999 5899999999986543                    


Q ss_pred             cccceeeeeEEEEE-ecCCCceEEEEEEeCcccc-ceeEEEEEEEEEecCCC-cEEEEEEEEEecCCCCCChhhh---hH
Q 038195           80 WSQHFVEKMKEKVE-LDPENKTVAMVVIEGDLMK-HFKSYKVIIKVIPKSEG-SLVKWIWEYEKLQEDGPTPSKY---VD  153 (172)
Q Consensus        80 ~~~~~~~~~kEri~-~D~~~~~i~Y~vieGdl~~-~~~s~~~t~~v~p~~dG-s~v~w~~~ye~~~~~~~~p~~~---~~  153 (172)
                           +.++|||++ +|+++++|+|+++|||++. .|++|+++++|.|.++| |+|+|+++|++.++..++|+.+   ++
T Consensus        64 -----~~~~kErl~~~D~~~~~~~y~iieG~~~~~~~~~~~~~~~v~~~~~~gs~v~wt~~y~~~~~~~~~~~~~~~~~~  138 (159)
T 1e09_A           64 -----YGYVKHKIDSIDKENYSYSYTLIEGDALGDTLEKISYETKLVASPSGGSIIKSTSHYHTKGNVEIKEEHVKAGKE  138 (159)
T ss_dssp             -----CEEEEEEEEEEETTTTEEEEEECCCTTTGGGEEEEEEEEEECCCTTSSEEEEEEEEEEECSSCCCCHHHHHHHHH
T ss_pred             -----ceEEEEEEEEEcCCCCEEEEEEEecccCcccceEEEEEEEEEecCCCCEEEEEEEEEEECCCCCCCHHHHHHHHH
Confidence                 578999999 9999999999999999554 79999999999999874 9999999999999999999887   78


Q ss_pred             HHHHHHHHHHHHHhhccC
Q 038195          154 FVTDLTKNIDAHLLKEEQ  171 (172)
Q Consensus       154 ~~~~~~k~ie~ylla~~~  171 (172)
                      .+.+|+|+||+||++||.
T Consensus       139 ~~~~~~k~ie~yll~~~~  156 (159)
T 1e09_A          139 KASNLFKLIETYLKGHPD  156 (159)
T ss_dssp             HHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHHHhChh
Confidence            999999999999999985

>2flh_A Cytokinin-specific binding protein; zeatin, pathogenesis-related proteins, multiple- ligand binding, plant protein; HET: ZEA; 1.20A {Vigna radiata} PDB: 3c0v_A*

Probab=100.00  E-value=7.3e-40  Score=255.49  Aligned_cols=145  Identities=17%  Similarity=0.257  Sum_probs=122.5

Q ss_pred             CceEEEEcCCHHHHHHH-hhcCCcccCCcCCCCeeeEEEEecccCCCCcEEEEEeecCCCCCcccchhcccccccccccc
Q 038195            1 METEVEIKSPADKFYNT-FSSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSAGDFPATRTEEQTQSSHLRGLHYQ   79 (172)
Q Consensus         1 ~~~e~~i~apa~kvw~~-~~d~~~~lpk~~P~~v~sve~~eGd~g~~Gsvr~~~~~~gg~~~~~~~~~~~~~~~~~~~~~   79 (172)
                      ++.+++|+|||++||++ ++|+.+++|+|+|+++++|+++||| |++||||+|+|.+|..                    
T Consensus         5 ~~~e~~i~a~a~kvw~~~v~d~~~l~pk~~P~~i~s~~~~eGd-gg~Gsvr~~~~~~g~~--------------------   63 (155)
T 2flh_A            5 FNTQTELSVRLEALWAVLSKDFITVVPKVLPHIVKDVQLIEGD-GGVGTILIFNFLPEVS--------------------   63 (155)
T ss_dssp             EEEEEEESSCHHHHHHHHHTSCTTHHHHHCTTTEEEEEEEECS-SSTTCEEEEEECTTSS--------------------
T ss_pred             EEEEEEecCCHHHHHHHHhcccccccchhccccceEEEEEcCC-CCCCeEEEEEeeCCCC--------------------
Confidence            36899999999999999 6999767799999999999999999 6899999999986623                    


Q ss_pred             cccceeeeeEEEEE-ecCCCceEEEEEEeCcc-ccceeEEEEEEEEEecCCC-cEEEEEEEEEecCCCCCChhhhh--HH
Q 038195           80 WSQHFVEKMKEKVE-LDPENKTVAMVVIEGDL-MKHFKSYKVIIKVIPKSEG-SLVKWIWEYEKLQEDGPTPSKYV--DF  154 (172)
Q Consensus        80 ~~~~~~~~~kEri~-~D~~~~~i~Y~vieGdl-~~~~~s~~~t~~v~p~~dG-s~v~w~~~ye~~~~~~~~p~~~~--~~  154 (172)
                           .+++|||++ +|+++|+|+|+++|||+ ..+|++|+++++|.|.++| |+|+|+++|++.++..+.+..++  ++
T Consensus        64 -----~~~~kErl~~iD~~~~~~~y~iieg~~l~~~~~~~~~~i~v~p~~~ggs~v~wt~~y~~~~~~~~~~~~~~~~~~  138 (155)
T 2flh_A           64 -----PSYQREEITEFDESSHEIGLQVIEGGYLSQGLSYYKTTFKLSEIEEDKTLVNVKISYDHDSDIEEKVTPTKTSQS  138 (155)
T ss_dssp             -----SCEEEEEEEEEETTTTEEEEEEEEEGGGGTTCSEEEEEEEEEEEETTEEEEEEEEEEEC-------CCHHHHHHH
T ss_pred             -----CcEEEEEEEEEeCCCCEEEEEEEeccccccCceEEEEEEEEEECCCCCEEEEEEEEEEECCCCccChhHhhhHHH
Confidence                 246999999 99999999999999995 4679999999999999876 99999999999998887788889  99


Q ss_pred             HHHHHHHHHHHHhhccC
Q 038195          155 VTDLTKNIDAHLLKEEQ  171 (172)
Q Consensus       155 ~~~~~k~ie~ylla~~~  171 (172)
                      +.+|+|+||+||+++|.
T Consensus       139 ~~~~~k~ie~yll~~~~  155 (155)
T 2flh_A          139 TLMYLRRLERYLSNGSA  155 (155)
T ss_dssp             HHHHHHHHHHHHC----
T ss_pred             HHHHHHHHHHHHhhCCC
Confidence            99999999999999974

>1icx_A Protein LLR18A, LLPR10.1A; 7-stranded beta sheet, C-terminal helix, allergen; 1.95A {Lupinus luteus} SCOP: d.129.3.1 PDB: 1ifv_A

Probab=100.00  E-value=2.1e-39  Score=252.27  Aligned_cols=143  Identities=19%  Similarity=0.269  Sum_probs=131.1

Q ss_pred             CceEEEEcCCHHHHHHHhh-cCCcccCCcCCCCeeeEEEEecccCCCCcEEEEEeecCCCCCcccchhcccccccccccc
Q 038195            1 METEVEIKSPADKFYNTFS-SKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSAGDFPATRTEEQTQSSHLRGLHYQ   79 (172)
Q Consensus         1 ~~~e~~i~apa~kvw~~~~-d~~~~lpk~~P~~v~sve~~eGd~g~~Gsvr~~~~~~gg~~~~~~~~~~~~~~~~~~~~~   79 (172)
                      ++.+++|+|||+++|++++ |+.+++|+|+| .|++|+++||| |++||||+|+|.+|++                    
T Consensus         5 ~~~e~~i~a~a~kvw~~~~~d~~~~~pk~~~-~i~s~~i~eG~-g~~Gsir~~~~~~G~~--------------------   62 (155)
T 1icx_A            5 FENEQSSTVAPAKLYKALTKDSDEIVPKVIE-PIQSVEIVEGN-GGPGTIKKIIAIHDGH--------------------   62 (155)
T ss_dssp             EEEEEEESSCHHHHHHHHTTTHHHHHHHHST-TEEEEEEEESS-SSTTCEEEEEEESSSS--------------------
T ss_pred             EEEEEEecCCHHHHHHHHhcCcchhcchhhh-hccEEEEEecC-CCCCeEEEEEEecCCc--------------------
Confidence            3689999999999999999 88768899995 79999999999 5899999999997655                    


Q ss_pred             cccceeeeeEEEEE-ecCCCceEEEEEEeCccc-cceeEEEEEEEEEecCC-CcEEEEEEEEEecCCCCCChhhh---hH
Q 038195           80 WSQHFVEKMKEKVE-LDPENKTVAMVVIEGDLM-KHFKSYKVIIKVIPKSE-GSLVKWIWEYEKLQEDGPTPSKY---VD  153 (172)
Q Consensus        80 ~~~~~~~~~kEri~-~D~~~~~i~Y~vieGdl~-~~~~s~~~t~~v~p~~d-Gs~v~w~~~ye~~~~~~~~p~~~---~~  153 (172)
                           ++++|||++ +|+++|+|+|+++|||++ +.|++|+++++|.|.++ ||+|+|+++|++.++. ++|+.+   ++
T Consensus        63 -----~~~~kErl~~~D~~~~~~~y~iieGd~~~~~~~~~~~~~~v~~~~~~gs~v~w~~~y~~~~~~-~~~~~~~~~~~  136 (155)
T 1icx_A           63 -----TSFVLHKLDAIDEANLTYNYSIIGGEGLDESLEKISYESKILPGPDGGSIGKINVKFHTKGDV-LSETVRDQAKF  136 (155)
T ss_dssp             -----EEEEEEEEEEEEGGGTEEEEEEEEETTSCTTEEEEEEEEEEEECGGGCEEEEEEEEEEESSSS-CCHHHHTTHHH
T ss_pred             -----ceeEEEEEEEEeccCCEEEEEEEecCCCccceEEEEEEEEEEecCCCCEEEEEEEEEEECCCC-CCHHHHHHHHH
Confidence                 678999999 999999999999999954 47999999999999976 5999999999999998 888877   88


Q ss_pred             HHHHHHHHHHHHHhhccC
Q 038195          154 FVTDLTKNIDAHLLKEEQ  171 (172)
Q Consensus       154 ~~~~~~k~ie~ylla~~~  171 (172)
                      ++.+|+|+||+||++||.
T Consensus       137 ~~~~~~k~ie~yll~~p~  154 (155)
T 1icx_A          137 KGLGLFKAIEGYVLAHPD  154 (155)
T ss_dssp             HHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHHHhCCC
Confidence            999999999999999996

>2qim_A PR10.2B; trans-zeatin, cytokinin, plant hormones, plant protein, PR-1 protein, pathogenesis-related protein, allergen; HET: ZEA; 1.35A {Lupinus luteus} PDB: 3e85_A* 1xdf_A* 2k7h_A

Probab=100.00  E-value=3e-39  Score=252.09  Aligned_cols=144  Identities=19%  Similarity=0.270  Sum_probs=132.2

Q ss_pred             CceEEEEcCCHHHHHHHhh-cCCcccCCcCCCCeeeEEEEecccCCCCcEEEEEeecCCCCCcccchhcccccccccccc
Q 038195            1 METEVEIKSPADKFYNTFS-SKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSAGDFPATRTEEQTQSSHLRGLHYQ   79 (172)
Q Consensus         1 ~~~e~~i~apa~kvw~~~~-d~~~~lpk~~P~~v~sve~~eGd~g~~Gsvr~~~~~~gg~~~~~~~~~~~~~~~~~~~~~   79 (172)
                      ++.+++|+|||+++|++++ |+.+++|+|+| .|++|+++||| |++||||.|+|.+|++                    
T Consensus         6 ~~~e~~i~a~a~kvw~~~~~d~~~~~pk~~~-~i~s~~i~eGd-gg~Gsir~~~~~~g~~--------------------   63 (158)
T 2qim_A            6 FQDEYTSTIAPAKLYKALVTDADIIIPKAVE-TIQSVEIVEGN-GGPGTIKKLTFIEGGE--------------------   63 (158)
T ss_dssp             EEEEEEESSCHHHHHHHHTTTHHHHHHHHCT-TEEEEEEEESS-SSTTCEEEEEEEETTE--------------------
T ss_pred             EEEEEEecCCHHHHHHHHhcCccchhhhHHh-hCcEEEEEecC-CCCCeEEEEEEcCCCc--------------------
Confidence            3689999999999999999 88768899995 79999999999 5899999999997655                    


Q ss_pred             cccceeeeeEEEEE-ecCCCceEEEEEEeCccc-cceeEEEEEEEEEecCC-CcEEEEEEEEEecCCCCCChhhh---hH
Q 038195           80 WSQHFVEKMKEKVE-LDPENKTVAMVVIEGDLM-KHFKSYKVIIKVIPKSE-GSLVKWIWEYEKLQEDGPTPSKY---VD  153 (172)
Q Consensus        80 ~~~~~~~~~kEri~-~D~~~~~i~Y~vieGdl~-~~~~s~~~t~~v~p~~d-Gs~v~w~~~ye~~~~~~~~p~~~---~~  153 (172)
                           ++++|||++ +|+++++|+|+++|||++ +.|++|+++++|+|.++ ||+|+|+++|++.++..++|+.+   ++
T Consensus        64 -----~~~~kErl~~~D~~~~~~~y~iieG~~~~~~~~~~~~~~~v~~~~~~gs~v~wt~~y~~~~~~~~~~~~~~~~~~  138 (158)
T 2qim_A           64 -----SKYVLHKIEAIDEANLGYNYSIVGGVGLPDTIEKISFETKLVEGANGGSIGKVTIKIETKGDAQPNEEEGKAAKA  138 (158)
T ss_dssp             -----EEEEEEEEEEEEGGGTEEEEEEEEESSCCCSEEEEEEEEEEEECSTTCEEEEEEEEEEESTTCCCCHHHHHHHHH
T ss_pred             -----ceeEEEEEEEEecCCCEEEEEEEeccCCccceEEEEEEEEEEecCCCCEEEEEEEEEEECCCCCCCHHHHHHHHH
Confidence                 678999999 999999999999999954 47999999999999976 59999999999999998899888   78


Q ss_pred             HHHHHHHHHHHHHhhccC
Q 038195          154 FVTDLTKNIDAHLLKEEQ  171 (172)
Q Consensus       154 ~~~~~~k~ie~ylla~~~  171 (172)
                      .+.+|+|+||+||++||.
T Consensus       139 ~~~~~~k~ie~yll~~p~  156 (158)
T 2qim_A          139 RGDAFFKAIESYLSAHPD  156 (158)
T ss_dssp             HHHHHHHHHHHHHHHCSS
T ss_pred             HHHHHHHHHHHHHHhCcC
Confidence            999999999999999985

>2vq5_A S-norcoclaurine synthase; lyase, S- norcoclaurine biosynthesis, dopamine, hydroxybenzaldehyde; HET: MSE LDP HBA; 2.09A {Thalictrum flavum} PDB: 2vne_A*

Probab=100.00  E-value=1.5e-38  Score=258.79  Aligned_cols=143  Identities=24%  Similarity=0.396  Sum_probs=129.3

Q ss_pred             ceEEEEcCCHHHHHHHh-h-cCCcccCCcCCCCeeeEEEEecccCCCCcEEEEEeecCCCCCcccchhcccccccccccc
Q 038195            2 ETEVEIKSPADKFYNTF-S-SKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSAGDFPATRTEEQTQSSHLRGLHYQ   79 (172)
Q Consensus         2 ~~e~~i~apa~kvw~~~-~-d~~~~lpk~~P~~v~sve~~eGd~g~~Gsvr~~~~~~gg~~~~~~~~~~~~~~~~~~~~~   79 (172)
                      +.+++|+|||++||+++ + |+.+++|+|+|++++||+++ || |++||||.|+|.+|++                    
T Consensus        32 ~~eveI~apa~kvW~~~v~~df~~l~pk~~P~~i~s~e~~-Gd-Gg~GsIR~lt~~~G~~--------------------   89 (201)
T 2vq5_A           32 HHELEVAASADDIWTVYSWPGLAKHLPDLLPGAFEKLEII-GD-GGVGTILDMTFVPGEF--------------------   89 (201)
T ss_dssp             EEEEEESSCHHHHHHHHTCGGGGGGHHHHSTTSCSEEEEE-SS-SSTTCEEEEECCTTCS--------------------
T ss_pred             EEEEEecCCHHHHHhhhhcCCcccchhhhCcccceEEEEe-cC-CCCCeEEEEEecCCCc--------------------
Confidence            57899999999999996 5 78777799999999999999 99 6899999999998866                    


Q ss_pred             cccceeeeeEEEEE-ecCCCceEEEEEEeCcc-ccceeEEEEEEEEEecCCC-cEEEEEEEEEecCCCC--CChhhhhHH
Q 038195           80 WSQHFVEKMKEKVE-LDPENKTVAMVVIEGDL-MKHFKSYKVIIKVIPKSEG-SLVKWIWEYEKLQEDG--PTPSKYVDF  154 (172)
Q Consensus        80 ~~~~~~~~~kEri~-~D~~~~~i~Y~vieGdl-~~~~~s~~~t~~v~p~~dG-s~v~w~~~ye~~~~~~--~~p~~~~~~  154 (172)
                           ++++|||++ +|+++|+|+|+++|||+ ...|++|+++++|+|.++| |+|+|+++|++.++..  +++..++++
T Consensus        90 -----~~~vkErle~iDde~~~~sYsiieGd~l~~~~~~y~~tikv~p~~dggs~vkWt~~ye~~~~~~~~~e~~~~~~~  164 (201)
T 2vq5_A           90 -----PHEYKEKFILVDNEHRLKKVQMIEGGYLDLGVTYYMDTIHVVPTGKDSCVIKSSTEYHVKPEFVKIVEPLITTGP  164 (201)
T ss_dssp             -----SCEEEEEEEEEETTTTEEEEEEEEEGGGGTTEEEEEEEEEEEEEETTEEEEEEEEEEEECGGGHHHHTTTCCSHH
T ss_pred             -----ccEEEEEEEEEchhhCEEEEEEEecCccccceeEEEEEEEEEECCCCCeEEEEEEEEEECCCCCCCChhHHHHHH
Confidence                 678999999 99999999999999995 4689999999999999876 9999999999998873  245567899


Q ss_pred             HHHHHHHHHHHHhhccC
Q 038195          155 VTDLTKNIDAHLLKEEQ  171 (172)
Q Consensus       155 ~~~~~k~ie~ylla~~~  171 (172)
                      +.+++|+||+||++||.
T Consensus       165 ~~~~~KaiE~yLlanp~  181 (201)
T 2vq5_A          165 LAAMADAISKLVLEHKS  181 (201)
T ss_dssp             HHHHHHHHHHHHHSCCC
T ss_pred             HHHHHHHHHHHHHhCcc
Confidence            99999999999999985

>1vjh_A BET V I allergen family; structural genomics, center for eukaryotic structural genomics, protein structure initiative, CESG, plant protein; 2.10A {Arabidopsis thaliana} SCOP: d.129.3.1 PDB: 2q3q_A

Probab=99.96  E-value=9.3e-29  Score=185.98  Aligned_cols=113  Identities=27%  Similarity=0.507  Sum_probs=100.6

Q ss_pred             CceEEEEcCCHHHHHHHhhcCCcccCCcCCCCeeeEEEEecccCCCCcEEEEEeecCCCCCcccchhccccccccccccc
Q 038195            1 METEVEIKSPADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSAGDFPATRTEEQTQSSHLRGLHYQW   80 (172)
Q Consensus         1 ~~~e~~i~apa~kvw~~~~d~~~~lpk~~P~~v~sve~~eGd~g~~Gsvr~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~   80 (172)
                      ++++++|++||++||++++++ +++|                |   |++        |.                     
T Consensus         7 ~~~e~~i~~~a~k~w~~~~~~-~~~p----------------~---g~~--------G~---------------------   37 (122)
T 1vjh_A            7 LSVKFDVKCPADKFFSAFVED-TNRP----------------F---EKN--------GK---------------------   37 (122)
T ss_dssp             EEEEEEESSCHHHHHHHHHHH-TTSC----------------S---STT--------CE---------------------
T ss_pred             EEEEEEecCCHHHHHHHHhhc-ccCC----------------c---cCC--------Cc---------------------
Confidence            368999999999999999998 6777                2   222        33                     


Q ss_pred             ccceeeeeEEEEE-ecCCCceEEEEEEeCccccceeEEEEEEEEEec--CCCcEEEEEEEEEecCCCCCChhhhhHHHHH
Q 038195           81 SQHFVEKMKEKVE-LDPENKTVAMVVIEGDLMKHFKSYKVIIKVIPK--SEGSLVKWIWEYEKLQEDGPTPSKYVDFVTD  157 (172)
Q Consensus        81 ~~~~~~~~kEri~-~D~~~~~i~Y~vieGdl~~~~~s~~~t~~v~p~--~dGs~v~w~~~ye~~~~~~~~p~~~~~~~~~  157 (172)
                               .|++ +|++|++|+|+++|||+++.|++|+++++|+|+  ++||+|+|+++|+++++..++|+.+++++.+
T Consensus        38 ---------~~ie~iD~~~~~~~y~iieGd~~~~~~~~~~~~~v~~~~~~~gs~vkwt~~ye~~~~~~~~p~~~~~~~~~  108 (122)
T 1vjh_A           38 ---------TEIEAVDLVKKTMTIQMSGSEIQKYFKTLKGSIAVTPIGVGDGSHVVWTFHFEKVHKDIDDPHSIIDESVK  108 (122)
T ss_dssp             ---------EEEEEEETTTTEEEEEEECTTGGGTEEEEEEEEEEEECSSSSCEEEEEEEEEEESSTTSCCSHHHHHHHHH
T ss_pred             ---------cEEEEEecccCEEEEEEEEccccccEEEEEEEEEEEEecCCCCeEEEEEEEEEECCCCCCCHHHHHHHHHH
Confidence                     2999 999999999999999988899999999999999  5569999999999999999999999999999


Q ss_pred             HHHHHHHHHhhccC
Q 038195          158 LTKNIDAHLLKEEQ  171 (172)
Q Consensus       158 ~~k~ie~ylla~~~  171 (172)
                      ++|+||+||++||.
T Consensus       109 ~~k~ie~yll~~p~  122 (122)
T 1vjh_A          109 YFKKLDEAILNFKE  122 (122)
T ss_dssp             HHHHHHHHHHHC--
T ss_pred             HHHHHHHHHhhCCC
Confidence            99999999999983

>3jrs_A PYL1, putative uncharacterized protein AT5G46790; plant hormone receptor, abscisic acid, hormone recepto; HET: A8S; 2.05A {Arabidopsis thaliana}

Probab=99.95  E-value=5.6e-27  Score=191.55  Aligned_cols=112  Identities=14%  Similarity=0.201  Sum_probs=96.1

Q ss_pred             eEEEEcCCHHHHHHHhhcCCcccCCcCCCCeeeEEEEecccCCCCcEEEEEeecCCCCCcccchhccccccccccccccc
Q 038195            3 TEVEIKSPADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSAGDFPATRTEEQTQSSHLRGLHYQWSQ   82 (172)
Q Consensus         3 ~e~~i~apa~kvw~~~~d~~~~lpk~~P~~v~sve~~eGd~g~~Gsvr~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~   82 (172)
                      ...+|+|||++||++++|+. .+|+|+| .|++|++++|+++++|+||.|+|..|++                       
T Consensus        58 v~~~I~ApadkVW~lv~Df~-~l~~w~p-~V~s~e~~eGd~g~vGsVR~lt~~~G~p-----------------------  112 (208)
T 3jrs_A           58 LAQRIHAPPETVWSVVRRFD-RPQIYKH-FIKSCNVSEDFEMRVGCTRDVNVISGLP-----------------------  112 (208)
T ss_dssp             EEEEESSCHHHHHHHHTCTT-CGGGTCT-TEEEEECCTTCCCSTTCEEEEEECTTSS-----------------------
T ss_pred             EEEEEeCCHHHHHHHHhCcC-ChhHccc-cceEEEEecCCCCCCCeEEEEEecCCCc-----------------------
Confidence            34589999999999999995 6799999 6999999999877999999999988876                       


Q ss_pred             ceeeeeEEEEE-ecCCCceEEEEEEeCccccceeEEEEEEEEEecC--CCcEEEEEEEEEecCC
Q 038195           83 HFVEKMKEKVE-LDPENKTVAMVVIEGDLMKHFKSYKVIIKVIPKS--EGSLVKWIWEYEKLQE  143 (172)
Q Consensus        83 ~~~~~~kEri~-~D~~~~~i~Y~vieGdl~~~~~s~~~t~~v~p~~--dGs~v~w~~~ye~~~~  143 (172)
                        ..+++|||+ +|+++|+|+|+|++|+++  +++|+++++|.|.+  +||.|+|+++|+....
T Consensus       113 --~~~vkErL~~lDde~~~~sYsIieG~lp--v~~Y~sti~V~p~~~g~~t~V~Wt~~fes~~~  172 (208)
T 3jrs_A          113 --ANTSRERLDLLDDDRRVTGFSITGGEHR--LRNYKSVTTVHRFEKEEEEERIWTVVLESYVV  172 (208)
T ss_dssp             --CCEEEEEEEEEETTTTEEEEEEEESSSS--CTTCEEEEEEEEEEC-----CEEEEEEEEEEE
T ss_pred             --cceEEEEEEEEeccCCEEEEEEeeCCcc--eeeEEEEEEEEEccCCCccEEEEEEEEEEccC
Confidence              667999999 999999999999999974  78889999999963  3599999999985443

>3kl1_A PYL2, putative uncharacterized protein AT2G26040; abscisic acid receptor, crystal, high resolution, PP2C, HORM receptor; 1.55A {Arabidopsis thaliana} PDB: 3kdi_A* 3kdh_A 3nr4_A* 3ns2_A* 3nj0_A* 3nj1_A* 3nmh_A* 3kaz_A 3kb0_A* 3kb3_A* 3ujl_A* 3nmp_A* 3nmt_A* 3nmv_A*

Probab=99.94  E-value=8.4e-26  Score=182.09  Aligned_cols=112  Identities=18%  Similarity=0.282  Sum_probs=96.5

Q ss_pred             EEEEcCCHHHHHHHhhcCCcccCCcCCCCeeeEEEEecccCCCCcEEEEEeecCCCCCcccchhcccccccccccccccc
Q 038195            4 EVEIKSPADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSAGDFPATRTEEQTQSSHLRGLHYQWSQH   83 (172)
Q Consensus         4 e~~i~apa~kvw~~~~d~~~~lpk~~P~~v~sve~~eGd~g~~Gsvr~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~   83 (172)
                      ..+|+|||++||++++|+.+  |++.|+.|++|++++|| |++||||.|+|..|++                        
T Consensus        40 ~~~I~Apa~~vW~lv~df~~--~~~w~p~I~s~e~~eGd-g~vGsVR~~t~~~G~p------------------------   92 (190)
T 3kl1_A           40 TQRIHAPASVVWPLIRRFDN--PERYKHFVKRCRLISGD-GDVGSVREVTVISGLP------------------------   92 (190)
T ss_dssp             EEEESSCHHHHHHHHHCTTC--GGGTCSSEEEEEEEESS-SSTTCEEEEEECSSSS------------------------
T ss_pred             EEEecCCHHHHHHHHhCCCC--hhHcccccCEEEEEcCC-CCCCeEEEEEecCCCc------------------------
Confidence            45899999999999999964  66666689999999999 6899999999988866                        


Q ss_pred             eeeeeEEEEE-ecCCCceEEEEEEeCcc-ccceeEEEEEEEEEe--cCCC-cEEEEEEEEEecCC
Q 038195           84 FVEKMKEKVE-LDPENKTVAMVVIEGDL-MKHFKSYKVIIKVIP--KSEG-SLVKWIWEYEKLQE  143 (172)
Q Consensus        84 ~~~~~kEri~-~D~~~~~i~Y~vieGdl-~~~~~s~~~t~~v~p--~~dG-s~v~w~~~ye~~~~  143 (172)
                       +.++||||+ +|+++|+|+|+++||++ ++.|+++...++++|  .++| |+|+|+++|++..+
T Consensus        93 -~~~vkErL~~iD~~~~~~sY~iieG~~~~~~Y~s~~~v~~~~~~~~~~~gt~V~Ws~~f~~p~g  156 (190)
T 3kl1_A           93 -ASTSTERLEFVDDDHRVLSFRVVGGEHRLKNYKSVTSVNEFLNQDSGKVYTVVLESYTVDIPEG  156 (190)
T ss_dssp             -CEEEEEEEEEEETTTTEEEEEEEEESSSCCSCEEEEEEEEEEC-CCCCEEEEEEEEEEEECCTT
T ss_pred             -cceEEEEEEEEeccCCEEEEEEEecCCccccEEEEEEEEecccccCCCCcEEEEEEEEEEcCCC
Confidence             678999999 99999999999999996 667888888888877  3444 99999999985443

>3rt2_A Abscisic acid receptor PYL10; ABA-independent PP2C inhibitor, PP2CS, hydrolase inhibitor; 1.50A {Arabidopsis thaliana} PDB: 3r6p_A* 3qtj_A* 3uqh_A 3rt0_C

Probab=99.94  E-value=2.3e-26  Score=184.44  Aligned_cols=111  Identities=20%  Similarity=0.276  Sum_probs=97.8

Q ss_pred             eEEEEcCCHHHHHHHhhcCCcccCCcCCCCeeeEEEEecccCCCCcEEEEEeecCCCCCcccchhccccccccccccccc
Q 038195            3 TEVEIKSPADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSAGDFPATRTEEQTQSSHLRGLHYQWSQ   82 (172)
Q Consensus         3 ~e~~i~apa~kvw~~~~d~~~~lpk~~P~~v~sve~~eGd~g~~Gsvr~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~   82 (172)
                      ...+|+|||++||++++|+. .+|+|+| .|++| .++|+++++|+||.|+|.+|.+                       
T Consensus        31 v~~~I~Apa~~VW~~v~df~-~l~~w~P-~V~s~-~~eG~~ggvGsvR~lt~~~G~p-----------------------   84 (183)
T 3rt2_A           31 LVKHIKAPLHLVWSIVRRFD-EPQKYKP-FISRC-VVQGKKLEVGSVREVDLKSGLP-----------------------   84 (183)
T ss_dssp             EEEEESSCHHHHHHHHTCTT-CGGGTCT-TEEEE-EESSSCCCTTCEEEEEECCSST-----------------------
T ss_pred             EEEEEeCCHHHHHHHHhCcC-chhhcCc-cceEE-EeeCCCCCCCcEEEEEeCCCCc-----------------------
Confidence            45689999999999999995 6799999 59999 7899547999999999987654                       


Q ss_pred             ceeeeeEEEEE-ecCCCceEEEEEEeCccccceeEEEEEEEEEecC-C---CcEEEEEEEEEecCC
Q 038195           83 HFVEKMKEKVE-LDPENKTVAMVVIEGDLMKHFKSYKVIIKVIPKS-E---GSLVKWIWEYEKLQE  143 (172)
Q Consensus        83 ~~~~~~kEri~-~D~~~~~i~Y~vieGdl~~~~~s~~~t~~v~p~~-d---Gs~v~w~~~ye~~~~  143 (172)
                        ..+++|||+ +|+++|+|+|++++|+++  |++|+++++|.|.+ +   ||.|+|+.+|++..+
T Consensus        85 --~~~vkErL~~~D~~~~~~sY~Iieg~lp--~~~y~ati~v~p~~~dG~~gt~V~Ws~~fd~~~g  146 (183)
T 3rt2_A           85 --ATKSTEVLEILDDNEHILGIRIVGGDHR--LKNYSSTISLHSETIDGKTGTLAIESFVVDVPEG  146 (183)
T ss_dssp             --TCEEEEEEEEEETTTTEEEEEEEEESCS--CTTCEEEEEEEEEEETTEEEEEEEEEEEEECCTT
T ss_pred             --cceEEEEEEEEECCCCEEEEEEecCCcc--eeEEEEEEEEEEecCCCCCCEEEEEEEEEEcCCC
Confidence              567999999 999999999999999874  89999999999976 4   499999999997654

>3k3k_A Abscisic acid receptor PYR1; ABA receptor, plant hormone receptor, A sensor, drought tolerance, plant development; HET: A8S; 1.70A {Arabidopsis thaliana} PDB: 3njo_A* 3qn1_A* 3k90_A* 3zvu_A* 3jrq_B* 3kdj_A* 3nef_A* 3neg_A* 3nmn_A* 3kay_A*

Probab=99.94  E-value=2.9e-26  Score=187.66  Aligned_cols=109  Identities=15%  Similarity=0.218  Sum_probs=98.8

Q ss_pred             eEEEEcCCHHHHHHHhhcCCcccCCcCCCCeeeEEEEecccCCCCcEEEEEeecCCCCCcccchhccccccccccccccc
Q 038195            3 TEVEIKSPADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSAGDFPATRTEEQTQSSHLRGLHYQWSQ   82 (172)
Q Consensus         3 ~e~~i~apa~kvw~~~~d~~~~lpk~~P~~v~sve~~eGd~g~~Gsvr~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~   82 (172)
                      ...+|+|||++||++++||. .+++|.| .|++|++++|+++++|+||.|+|..|.+                       
T Consensus        54 v~~~I~ApadkVW~lv~dF~-~l~~w~p-~V~s~e~~eGd~g~vGsVR~lt~~~G~p-----------------------  108 (211)
T 3k3k_A           54 HAQRIHAPPELVWSIVRRFD-KPQTYKH-FIKSCSVEQNFEMRVGCTRDVIVISGLP-----------------------  108 (211)
T ss_dssp             EEEEESSCHHHHHHHHTCTT-CGGGTCS-SEEEEECCTTCCCCTTCEEEEEESSSSS-----------------------
T ss_pred             EEEEEcCCHHHHHHHHhCcC-ChhHcCc-cceEEEEecCCCCCCCcEEEEEecCCCc-----------------------
Confidence            34589999999999999995 6899999 6999999999867999999999987766                       


Q ss_pred             ceeeeeEEEEE-ecCCCceEEEEEEeCccccceeEEEEEEEEEecCCCcEEEEEEEEEec
Q 038195           83 HFVEKMKEKVE-LDPENKTVAMVVIEGDLMKHFKSYKVIIKVIPKSEGSLVKWIWEYEKL  141 (172)
Q Consensus        83 ~~~~~~kEri~-~D~~~~~i~Y~vieGdl~~~~~s~~~t~~v~p~~dGs~v~w~~~ye~~  141 (172)
                        +.+++|||+ +|+++|+|+|+|++|+++  |++|+++++|.|.++|+ |+|+++|+..
T Consensus       109 --~~~vkErL~~lDd~~~~~sYsIieg~lp--v~~Y~sti~V~p~~~gg-V~Wt~~fes~  163 (211)
T 3k3k_A          109 --ANTSTERLDILDDERRVTGFSIIGGEHR--LTNYKSVTTVHRFEKEN-RIWTVVLESY  163 (211)
T ss_dssp             --CEEEEEEEEEEETTTTEEEEEEEEETTG--GGTCEEEEEEEEEEETT-EEEEEEEEEE
T ss_pred             --cceEEEEEEEEeccCCEEEEEEeecCcc--eeEEEEEEEEEECCCCC-EEEEEEEEEe
Confidence              677999999 999999999999999974  89999999999998888 9999999854

>3oqu_A Abscisic acid receptor PYL9; RCAR1, hormone receptor; HET: A8S; 2.68A {Arabidopsis thaliana}

Probab=99.93  E-value=5.4e-25  Score=179.43  Aligned_cols=125  Identities=25%  Similarity=0.361  Sum_probs=102.4

Q ss_pred             ceEE--EEcCCHHHHHHHhhcCCcccCCcCCCCeeeEEEEecccCCCCcEEEEEeecCCCCCcccchhcccccccccccc
Q 038195            2 ETEV--EIKSPADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSAGDFPATRTEEQTQSSHLRGLHYQ   79 (172)
Q Consensus         2 ~~e~--~i~apa~kvw~~~~d~~~~lpk~~P~~v~sve~~eGd~g~~Gsvr~~~~~~gg~~~~~~~~~~~~~~~~~~~~~   79 (172)
                      +.++  +|+|||++||++++|+. .+++|+| .|++|++ +|+ +++|+||.|+|..|.+                    
T Consensus        53 ~~~V~~~I~ApadkVW~lV~Df~-~l~kW~P-~V~s~ev-eGd-g~vGsVR~vt~~~G~p--------------------  108 (205)
T 3oqu_A           53 TSALVKHIKAPLHLVWSLVRRFD-QPQKYKP-FVSRCTV-IGD-PEIGSLREVNVKSGLP--------------------  108 (205)
T ss_dssp             EEEEEEEESSCHHHHHHHHTCTT-CGGGTCT-TEEEEEC-CSS-CCTTCEEEEEECTTSS--------------------
T ss_pred             EEEEeeEEcCCHHHHHHHHhCcC-ChhHcCc-cceEEEe-eCC-CCCCcEEEEEEcCCCc--------------------
Confidence            4677  89999999999999996 6789999 6999984 898 7999999999987755                    


Q ss_pred             cccceeeeeEEEEE-ecCCCceEEEEEEeCccccceeEEEEEEEEEecC-CC---cEEEEEEEEEecCCCCCChhhhhHH
Q 038195           80 WSQHFVEKMKEKVE-LDPENKTVAMVVIEGDLMKHFKSYKVIIKVIPKS-EG---SLVKWIWEYEKLQEDGPTPSKYVDF  154 (172)
Q Consensus        80 ~~~~~~~~~kEri~-~D~~~~~i~Y~vieGdl~~~~~s~~~t~~v~p~~-dG---s~v~w~~~ye~~~~~~~~p~~~~~~  154 (172)
                           ..+++|||+ +|+++|+|+|+++||+++  |++|+++++|.|.+ +|   |++.|++.+.+..+.  ..++...+
T Consensus       109 -----~~~vkErL~~lDde~~~~sYsIieG~lp--v~~Y~ati~V~p~~~dG~~~T~v~ws~~~D~p~g~--t~e~~~~~  179 (205)
T 3oqu_A          109 -----ATTSTERLELLDDEEHILGIKIIGGDHR--LKNYSSILTVHPEIIEGRAGTMVIESFVVDVPQGN--TKDETCYF  179 (205)
T ss_dssp             -----CSEEEEEEEEEETTTTEEEEEEEEESSS--CTTCEEEEEEEEECCCC-CEEEEEEEEEEECCTTC--CHHHHHHH
T ss_pred             -----cceEEEEEEEEECCCCEEEEEEEecCcc--eeEEEEEEEEEEccCCCCceEEEEEEEeccCCCCC--CHHHHHHH
Confidence                 567999999 999999999999999875  89999999999988 44   788888887655443  23444433


Q ss_pred             HHHHH
Q 038195          155 VTDLT  159 (172)
Q Consensus       155 ~~~~~  159 (172)
                      +..++
T Consensus       180 v~~v~  184 (205)
T 3oqu_A          180 VEALI  184 (205)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            33333

>3p51_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 2.06A {Nitrosospira multiformis}

Probab=99.93  E-value=1.7e-24  Score=169.33  Aligned_cols=131  Identities=11%  Similarity=0.206  Sum_probs=104.4

Q ss_pred             CceEEEEcCCHHHHHHHhhcCCcccCCcCCCCeeeEEEEeccc-CCCCcEEEEEeecCCCCCcccchhcccccccccccc
Q 038195            1 METEVEIKSPADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDW-ESHGSVKSWTFSAGDFPATRTEEQTQSSHLRGLHYQ   79 (172)
Q Consensus         1 ~~~e~~i~apa~kvw~~~~d~~~~lpk~~P~~v~sve~~eGd~-g~~Gsvr~~~~~~gg~~~~~~~~~~~~~~~~~~~~~   79 (172)
                      ++++++|+|||++||++++|+. .+ +|+|.++++|++++|++ +++|+||.+    |+.                    
T Consensus         4 v~~si~I~Ap~~~VW~~v~Df~-~~-~w~P~v~~s~e~~eg~~~~~vGsvR~~----gg~--------------------   57 (160)
T 3p51_A            4 VYNSIVVDAPVERVWSRIRNFH-DF-SWAPSLIKSCKKVGGGGGYSVGARRLL----NGE--------------------   57 (160)
T ss_dssp             EEEEEEESSCHHHHHHHHCCTT-CC-TTCTTTCCCEEEESSCCTTCTTCEEEE----TTT--------------------
T ss_pred             EEEEEEECCCHHHHHHHHhCcC-CC-eEccCceEEEEEEecCCCCCCCCEEEE----CCE--------------------
Confidence            3678999999999999999996 56 99998777789999985 489999998    344                    


Q ss_pred             cccceeeeeEEEEE-ecCCCceEEEEEEeCcccc---ceeEEEEEEEEEecC-CC-cEEEEEEEEEecCCCCCChhhhhH
Q 038195           80 WSQHFVEKMKEKVE-LDPENKTVAMVVIEGDLMK---HFKSYKVIIKVIPKS-EG-SLVKWIWEYEKLQEDGPTPSKYVD  153 (172)
Q Consensus        80 ~~~~~~~~~kEri~-~D~~~~~i~Y~vieGdl~~---~~~s~~~t~~v~p~~-dG-s~v~w~~~ye~~~~~~~~p~~~~~  153 (172)
                              ++|||+ +|+++++|+|++++|+++.   .+++|.++++|.|.+ +| |.|+|+++|++.++  ........
T Consensus        58 --------v~Erl~~~D~~~~~~sY~ii~g~l~~~~~~~~~y~~~~~v~p~~~~ggt~V~w~~~~~~~~~--~~~~~~~~  127 (160)
T 3p51_A           58 --------FLDTLIAYSEIERRIMYSMDEGPSPVSSGEIYNYVGNLHLLPVTIDDTTFVEWSGSWESAST--EAVEYMNT  127 (160)
T ss_dssp             --------EEEEEEEEETTTTEEEEEEEECSTTSSTTTEEEEEEEEEEEEETTTTEEEEEEEEEEEESCS--HHHHHHHH
T ss_pred             --------EEEEEEEEcCCCcEEEEEEecCCCcccccceeEEEEEEEEEEecCCCCEEEEEEEEEEeCHH--HHHHHHHH
Confidence                    799999 9999999999999999864   399999999999986 44 99999999999742  00111123


Q ss_pred             HHHHHHHHHHHHHh
Q 038195          154 FVTDLTKNIDAHLL  167 (172)
Q Consensus       154 ~~~~~~k~ie~yll  167 (172)
                      .+...++.|.+.+-
T Consensus       128 ~~~~~L~~Lk~~~e  141 (160)
T 3p51_A          128 VYRSLLADLAAEFT  141 (160)
T ss_dssp             HHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHHh
Confidence            44555555555544

>3f08_A Uncharacterized protein Q6HG14; NESG Q6HG14_bachk Q6HG14 BUR153, structural genomics, PSI-2; 2.20A {Bacillus thuringiensis serovar konkukiorganism_taxid} SCOP: d.129.3.8 PDB: 3cnw_A

Probab=99.92  E-value=1.6e-24  Score=166.42  Aligned_cols=127  Identities=17%  Similarity=0.351  Sum_probs=101.3

Q ss_pred             CceEEEEcCCHHHHHHHhhcCCcccCCcCCCCeeeEEEEecccCCCCcEEEEEeecCCCCCcccchhccccccccccccc
Q 038195            1 METEVEIKSPADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSAGDFPATRTEEQTQSSHLRGLHYQW   80 (172)
Q Consensus         1 ~~~e~~i~apa~kvw~~~~d~~~~lpk~~P~~v~sve~~eGd~g~~Gsvr~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~   80 (172)
                      ++.+++|+|||++||++++|+. .+|+|+|. +++|++++|     |+||.++|..|+.                     
T Consensus         4 v~~si~I~Ap~~~VW~~l~d~~-~~~~w~p~-v~~~~~~~G-----G~vR~~~~~~G~~---------------------   55 (146)
T 3f08_A            4 TTTSMEIFGSTEQVWQLIGGFN-SLPDWLPY-IPSSKLTEG-----GRVRHLANPDGET---------------------   55 (146)
T ss_dssp             EEEEEEESSCHHHHHHHHCSTT-CHHHHCTT-CCEEEEEGG-----GTEEEEECTTSCE---------------------
T ss_pred             EEEEEEEeCCHHHHHHHHhccc-cHHHhCCC-eEEEEEeCC-----CeEEEEEeCCCCE---------------------
Confidence            3678999999999999999995 67999995 999999864     8999999965543                     


Q ss_pred             ccceeeeeEEEEE-ecCCCceEEEEEEeCccccceeEEEEEEEEEe-cC-CCcEEEEEEEEEecCCCCCChhhhhH----
Q 038195           81 SQHFVEKMKEKVE-LDPENKTVAMVVIEGDLMKHFKSYKVIIKVIP-KS-EGSLVKWIWEYEKLQEDGPTPSKYVD----  153 (172)
Q Consensus        81 ~~~~~~~~kEri~-~D~~~~~i~Y~vieGdl~~~~~s~~~t~~v~p-~~-dGs~v~w~~~ye~~~~~~~~p~~~~~----  153 (172)
                             ++||++ +|+++++|+|++++|+++  +++|.++++|.| .+ +||+|+|+++|++.+.   ..+....    
T Consensus        56 -------~~Erl~~~D~~~~~~~y~iv~g~~~--~~~~~~~~~v~p~~~~~gt~v~w~~~~~p~g~---~~~~~~~~~~~  123 (146)
T 3f08_A           56 -------IIERLEVFNDKERYYTYSIMNAPFP--VTNYLSTIQVKEGTESNTSLVEWSGTFTPVAV---SDEEAINLVHG  123 (146)
T ss_dssp             -------EEEEEEEEETTTTEEEEEEEECSSS--EEEEEEEEEEEECSSTTCEEEEEEEEEEESSS---CHHHHHHHHHH
T ss_pred             -------EEEEEEEEeCCCCEEEEEEecCCCc--eeEEEEEEEEEEecCCCcEEEEEEEEEEeCCC---CHHHHHHHHHH
Confidence                   899999 999999999999999875  899999999999 44 4599999999998322   2223333    


Q ss_pred             HHHHHHHHHHHHHh
Q 038195          154 FVTDLTKNIDAHLL  167 (172)
Q Consensus       154 ~~~~~~k~ie~yll  167 (172)
                      .+...++.|.+++.
T Consensus       124 ~~~~~L~~Lk~~~e  137 (146)
T 3f08_A          124 IYSDGLKALQHAFL  137 (146)
T ss_dssp             HHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHh
Confidence            44444455555543

>3oji_A Abscisic acid receptor PYL3; crystal, PP2C, pyrabactin, HOR receptor; HET: PYV; 1.84A {Arabidopsis thaliana} PDB: 4ds8_A* 3klx_A* 4dsb_A* 4dsc_A*

Probab=99.90  E-value=3.6e-23  Score=166.76  Aligned_cols=126  Identities=17%  Similarity=0.220  Sum_probs=91.9

Q ss_pred             eEEEEcCCHHHHHHHhhcCCcccCCcCCCCeeeEEEEe-cccCC---CCcEEEEEeecCCCCCcccchhccccccccccc
Q 038195            3 TEVEIKSPADKFYNTFSSKAHTVPNMSPGNLHGVEVHE-GDWES---HGSVKSWTFSAGDFPATRTEEQTQSSHLRGLHY   78 (172)
Q Consensus         3 ~e~~i~apa~kvw~~~~d~~~~lpk~~P~~v~sve~~e-Gd~g~---~Gsvr~~~~~~gg~~~~~~~~~~~~~~~~~~~~   78 (172)
                      ...+|+|||++||++++||. .++.|+| +|++|++.+ ||++.   +|+||.|+|..|.+                   
T Consensus        34 ~~~~I~Ap~d~VWalVrdF~-~p~~w~p-~V~s~~~~e~Gdg~~~~~vGsVR~ltl~~G~P-------------------   92 (189)
T 3oji_A           34 IAHRVDAPAHAIWRFVRDFA-NPNKYKH-FIKSCTIRVNGNGIKEIKVGTIREVSVVSGLP-------------------   92 (189)
T ss_dssp             EEEEESSCHHHHHHHHSCTT-CGGGTCT-TEEEEEECCC----CCCSTTCEEEEEECSSSS-------------------
T ss_pred             EEEEEcCCHHHHHHHHhCCC-ChhhCcc-ccceEEEEecCCCCccCCCCcEEEEEecCCCc-------------------
Confidence            35688999999999999995 6778988 699999998 98432   99999999987755                   


Q ss_pred             ccccceeeeeEEEEE-ecCCCceEEEEEEeCccccceeEEEEEEEEEecC---CC------cEEEEEEEEEecCCCCCCh
Q 038195           79 QWSQHFVEKMKEKVE-LDPENKTVAMVVIEGDLMKHFKSYKVIIKVIPKS---EG------SLVKWIWEYEKLQEDGPTP  148 (172)
Q Consensus        79 ~~~~~~~~~~kEri~-~D~~~~~i~Y~vieGdl~~~~~s~~~t~~v~p~~---dG------s~v~w~~~ye~~~~~~~~p  148 (172)
                            ..+++|||+ +|+++|+|+|+|++|+++  ++.|+++++|.|..   +|      |++.|++.+.+..++  ..
T Consensus        93 ------~~~i~ErL~~lDde~~~~sY~Iieg~~p--v~nY~StitV~~~~~~~~G~~~~~~T~v~es~~~D~P~g~--t~  162 (189)
T 3oji_A           93 ------ASTSVEILEVLDEEKRILSFRVLGGEHR--LNNYRSVTSVNEFVVLEKDKKKRVYSVVLESYIVDIPQGN--TE  162 (189)
T ss_dssp             ------BSEEEEEEEEEETTTTEEEEEEEECSBS--SCSCEEEEEEEEEEEECTTSCEEEEEEEEEEEEEECCTTS--CH
T ss_pred             ------CceEEEEEEEEeccCCEEEEEEEecCCc--cccEEEEEEEEeccccCCCccccCcEEEEEeEecCCCCCC--CH
Confidence                  567999999 999999999999999963  67777788888742   34      555555554332221  34


Q ss_pred             hhhhHHHHHHH
Q 038195          149 SKYVDFVTDLT  159 (172)
Q Consensus       149 ~~~~~~~~~~~  159 (172)
                      ++...++..++
T Consensus       163 e~~~~~v~~v~  173 (189)
T 3oji_A          163 EDTRMFVDTVV  173 (189)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            44444555544

>2le1_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, unknown function; NMR {Thermobifida fusca}

Probab=99.88  E-value=4.1e-22  Score=151.04  Aligned_cols=134  Identities=9%  Similarity=0.199  Sum_probs=106.0

Q ss_pred             CceEEEEcCCHHHHHHHhhcCCcccCCcCCCCeeeEEEEecccCCCCcEEEEEeecCCCCCcccchhccccccccccccc
Q 038195            1 METEVEIKSPADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSAGDFPATRTEEQTQSSHLRGLHYQW   80 (172)
Q Consensus         1 ~~~e~~i~apa~kvw~~~~d~~~~lpk~~P~~v~sve~~eGd~g~~Gsvr~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~   80 (172)
                      ++.+++|+|||++||+++.|+. .+|+|+|. +++|++++|+++++|++|.+++..|+                      
T Consensus         4 v~~si~I~ap~e~Vw~~l~d~~-~~~~w~p~-v~~~~~~~g~~~~~G~~r~~~~~~G~----------------------   59 (151)
T 2le1_A            4 LRRSVEVAAPAADVWTLVGDFS-AIHRWHPQ-VSAPTLRGASPHTPGAERVFGAGTEE----------------------   59 (151)
T ss_dssp             EEEEEEESSCHHHHHHHHTTSG-GGGGTCTT-CCCEEEESSCTTSTTCEEEESSSSSS----------------------
T ss_pred             EEEEEEecCCHHHHHHHHhCcC-cHHHhcCC-ceEEEEECCCCCCCCeEEEEEeCCCC----------------------
Confidence            3678999999999999999985 77999997 89999999876689999999885433                      


Q ss_pred             ccceeeeeEEEEE-ecCCCceEEEEEEeCccccceeEEEEEEEEEecC-CCcEEEEEEEEEec-CCCCCChh---hhhHH
Q 038195           81 SQHFVEKMKEKVE-LDPENKTVAMVVIEGDLMKHFKSYKVIIKVIPKS-EGSLVKWIWEYEKL-QEDGPTPS---KYVDF  154 (172)
Q Consensus        81 ~~~~~~~~kEri~-~D~~~~~i~Y~vieGdl~~~~~s~~~t~~v~p~~-dGs~v~w~~~ye~~-~~~~~~p~---~~~~~  154 (172)
                            +++|+|+ +|+++++++|++++|+++  +++|.++++|+|.+ +||.|+|+.+|++. .+  ....   .+...
T Consensus        60 ------~~~e~i~~~d~~~~~~~~~~~~g~~~--~~~~~~~~~l~~~~~~gt~v~w~~~f~~~p~~--~~~~~~~~~~~~  129 (151)
T 2le1_A           60 ------ELVERLVERDESARRLVYTMPDPPFP--ITNHRAVLEVVPRDDRHCTVVWTAMFDCSPET--ARELESVIGDGV  129 (151)
T ss_dssp             ------CEEEEEEEEETTTTEEEEEEEECSSS--EEEEEEEEEEEESSSSCEEEEEEEEEEECHHH--HHHHHHHTTTTH
T ss_pred             ------EEEEEEEEEeCCCCEEEEEEecCCCC--ceeEEEEEEEEECCCCcEEEEEEEEEEecCCC--CCHHHHHHHHHH
Confidence                  2889999 999999999999999864  89999999999954 46999999999972 11  1111   11235


Q ss_pred             HHHHHHHHHHHHhh
Q 038195          155 VTDLTKNIDAHLLK  168 (172)
Q Consensus       155 ~~~~~k~ie~ylla  168 (172)
                      +...++.|.+++-+
T Consensus       130 ~~~~L~~Lk~~~e~  143 (151)
T 2le1_A          130 FAVGLNALAERYGR  143 (151)
T ss_dssp             HHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHhhc
Confidence            55566666666544

>2d4r_A Hypothetical protein TTHA0849; start domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 2.40A {Thermus thermophilus} SCOP: d.129.3.6

Probab=99.56  E-value=3.5e-13  Score=97.76  Aligned_cols=134  Identities=20%  Similarity=0.207  Sum_probs=95.8

Q ss_pred             ceEEEEcCCHHHHHHHhhcCCcccCCcCCCCeeeEEEEecccCCCCcEEEEEeecCCCCCcccchhcccccccccccccc
Q 038195            2 ETEVEIKSPADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSAGDFPATRTEEQTQSSHLRGLHYQWS   81 (172)
Q Consensus         2 ~~e~~i~apa~kvw~~~~d~~~~lpk~~P~~v~sve~~eGd~g~~Gsvr~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~   81 (172)
                      +.++.|+||+++||+++.|.. .+|+|+|. ++++++++++.  .|....+++..+|.                      
T Consensus         5 ~~~~~i~ap~~~V~~~l~d~~-~~~~w~p~-~~~~~~~~~~~--~g~~~~~~~~~~g~----------------------   58 (147)
T 2d4r_A            5 RAERYIPAPPERVYRLAKDLE-GLKPYLKE-VESLEVVAREG--ARTRSRWVAVAMGK----------------------   58 (147)
T ss_dssp             EEEEEESSCHHHHHHHHHCHH-HHGGGCTT-EEEEEEEEEET--TEEEEEEEEEETTE----------------------
T ss_pred             EEEEEeCCCHHHHHHHHhChh-hhhhhccc-ccEEEEEEeCC--CccEEEEEEEeCCc----------------------
Confidence            578899999999999999985 78999996 88999887652  35666676654443                      


Q ss_pred             cceeeeeEEEEEecCCCceEEEEEEeCccccceeEEEEEEEEEecCCCcEEEEEEEEEecCCCCCC-hh-----hhhHHH
Q 038195           82 QHFVEKMKEKVELDPENKTVAMVVIEGDLMKHFKSYKVIIKVIPKSEGSLVKWIWEYEKLQEDGPT-PS-----KYVDFV  155 (172)
Q Consensus        82 ~~~~~~~kEri~~D~~~~~i~Y~vieGdl~~~~~s~~~t~~v~p~~dGs~v~w~~~ye~~~~~~~~-p~-----~~~~~~  155 (172)
                         ......++..+++++++.|++++|++    +.+..+++|+|.++||.++|+++|+..+..... -.     .+...+
T Consensus        59 ---~~~~~~~~~~~~~~~~i~~~~~~g~~----~~~~~~~~~~~~~~gT~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (147)
T 2d4r_A           59 ---KVRWLEEEEWDDENLRNRFFSPEGDF----DRYEGTWVFLPEGEGTRVVLTLTYELTIPIFGGLLRKLVQKLMQENV  131 (147)
T ss_dssp             ---EEEEEEEEEEETTTTEEEEEEEEESC----SEEEEEEEEEECSSSEEEEEEEEEECCCTTTTTTTHHHHHHHHHHHH
T ss_pred             ---eEEEEEEEEEcCCCcEEEEEeccCCh----hheEEEEEEEECCCCcEEEEEEEEecCCccHHHHHHHHHHHHHHHHH
Confidence               11234555656788899999998865    567889999999889999999999987532111 11     112345


Q ss_pred             HHHHHHHHHHHhh
Q 038195          156 TDLTKNIDAHLLK  168 (172)
Q Consensus       156 ~~~~k~ie~ylla  168 (172)
                      ..++++|.+++-+
T Consensus       132 ~~~l~~lk~~~e~  144 (147)
T 2d4r_A          132 ESLLKGLEERVLA  144 (147)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh
Confidence            5566666655543

>3tl1_A WHIE ORF VI, polyketide cyclase; helix-GRIP fold, polyketide C9-C14 aromatase/cyclase, linear beta-ketone intermediate; HET: JRO; 1.80A {Streptomyces coelicolor} PDB: 3tvr_A 2kf2_A

Probab=99.51  E-value=7.1e-13  Score=102.95  Aligned_cols=110  Identities=19%  Similarity=0.318  Sum_probs=85.2

Q ss_pred             ceEEEEcCCHHHHHHHhhcCCcccCCcCCCCeeeEEEEecccCCCCcEEEEE--eecCCCCCcccchhcccccccccccc
Q 038195            2 ETEVEIKSPADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWT--FSAGDFPATRTEEQTQSSHLRGLHYQ   79 (172)
Q Consensus         2 ~~e~~i~apa~kvw~~~~d~~~~lpk~~P~~v~sve~~eGd~g~~Gsvr~~~--~~~gg~~~~~~~~~~~~~~~~~~~~~   79 (172)
                      +.++.|.+||+++|+++.|.. ..|+|+|. +.++++++++ +..-.+| ++  ...+|.                    
T Consensus         6 ~~si~I~a~~~~V~~lV~Dve-~yP~~~p~-~~~~~vl~~~-~~~~~~r-l~~~~~~~G~--------------------   61 (159)
T 3tl1_A            6 DNEITIAAPMELVWNMTNDIE-KWPGLFSE-YASVEVLGRD-DDKVTFR-LTMHPDADGK--------------------   61 (159)
T ss_dssp             EEEEEESSCHHHHHHHHTCGG-GHHHHCSS-EEEEEEEEEC-SSEEEEE-EEECCCTTSC--------------------
T ss_pred             EEEEEecCCHHHHHHHHHhHH-HhhhhhhC-ceEEEEEecC-CCEEEEE-EEEEeccCce--------------------
Confidence            568899999999999999995 89999996 9999999876 2222233 32  333443                    


Q ss_pred             cccceeeeeEEEEEecCCCceEEEEEEeCccccceeEEEEEEEEEecCCCcEEEEEEEEEecCC
Q 038195           80 WSQHFVEKMKEKVELDPENKTVAMVVIEGDLMKHFKSYKVIIKVIPKSEGSLVKWIWEYEKLQE  143 (172)
Q Consensus        80 ~~~~~~~~~kEri~~D~~~~~i~Y~vieGdl~~~~~s~~~t~~v~p~~dGs~v~w~~~ye~~~~  143 (172)
                           ......+..+|++.++|.|++++.+   +++++.++|+|+|.++||.|+|..+|+..++
T Consensus        62 -----~~~~ts~~~~d~~~~~I~~~~~~~g---Pf~~l~g~W~f~p~~~gt~V~~~~df~~~~~  117 (159)
T 3tl1_A           62 -----VWSWVSERVADPVTRTVRAQRVETG---PFQYMNIVWEYAETAEGTVMRWTQDFAMKPD  117 (159)
T ss_dssp             -----CCEEEEEEEEETTTTEEEEEESSCT---TEEEEEEEEEEEEETTEEEEEEEEEEEECTT
T ss_pred             -----EEEEEEEEEEcCCCCEEEEEEccCC---ChhhccCEEEEEECCCCEEEEEEEEEEecCC
Confidence                 2222345568999999999987433   3799999999999988999999999998765

>3tvq_A Multifunctional cyclase-dehydratase-3-O-methyl TR TCMN; tetracenomycin, aromatase, taxifolin, dihyroquercet helix-GRIP fold; HET: DQH; 1.67A {Streptomyces glaucescens} PDB: 2rer_A 2res_A 2rez_A

Probab=99.48  E-value=1.7e-12  Score=101.78  Aligned_cols=109  Identities=13%  Similarity=0.164  Sum_probs=82.9

Q ss_pred             ceEEEEcCCHHHHHHHhhcCCcccCCcCCCCeeeEEEEecccCCCCcEEE-EE--eecCCCCCcccchhccccccccccc
Q 038195            2 ETEVEIKSPADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKS-WT--FSAGDFPATRTEEQTQSSHLRGLHY   78 (172)
Q Consensus         2 ~~e~~i~apa~kvw~~~~d~~~~lpk~~P~~v~sve~~eGd~g~~Gsvr~-~~--~~~gg~~~~~~~~~~~~~~~~~~~~   78 (172)
                      +.++.|.|||++||+++.|+. ..|+|+|. +.+++++++++   +.++. +.  ...+|.                 . 
T Consensus         6 ~~si~I~a~~~~v~~lv~Dv~-~~p~w~p~-~~~~~~~~~~~---~~~~~~l~~~~~~~G~-----------------~-   62 (169)
T 3tvq_A            6 DNSIVVNAPFELVWDVTNDIE-AWPELFSE-YAEAEILRQDG---DGFDFRLKTRPDANGR-----------------V-   62 (169)
T ss_dssp             EEEEEESSCHHHHHHHHTCGG-GHHHHCTT-EEEEEEEEEET---TEEEEEEEECCCTTSC-----------------C-
T ss_pred             EEEEEecCCHHHHHHHHHhhh-HHHHHHhh-eeEEEEEecCC---CEEEEEEEEEecCCCe-----------------E-
Confidence            578999999999999999985 79999996 99999998762   23321 22  112332                 1 


Q ss_pred             ccccceeeeeEEEEEecCCCceEEEEEEeCccccceeEEEEEEEEEecCCCcEEEEEEEEEecCC
Q 038195           79 QWSQHFVEKMKEKVELDPENKTVAMVVIEGDLMKHFKSYKVIIKVIPKSEGSLVKWIWEYEKLQE  143 (172)
Q Consensus        79 ~~~~~~~~~~kEri~~D~~~~~i~Y~vieGdl~~~~~s~~~t~~v~p~~dGs~v~w~~~ye~~~~  143 (172)
                            ..+ ..+..+|+..++|.|+.++++   +++.|.++|+|+|.++||.|+|..+|+..++
T Consensus        63 ------~~~-ts~~~~d~~~~~I~~~~l~~g---Pf~~~~g~W~f~p~~~gt~V~~~~df~~~~~  117 (169)
T 3tvq_A           63 ------WEW-VSHRVPDKGSRTVRAHRVETG---PFAYMNLHWTYRAVAGGTEMRWVQEFDMKPG  117 (169)
T ss_dssp             ------CEE-EEEEEEEGGGTEEEEEESSCT---TEEEEEEEEEEEEETTEEEEEEEEEEEECTT
T ss_pred             ------EEE-EEEEEEcCCCcEEEEEEcCCC---ChhheeeEEEEEECCCCEEEEEEEEEEecCC
Confidence                  122 333358899999999986543   4789999999999988899999999998765

>3tfz_A Cyclase; helix-GRIP, BET V1-like superfamily, biosynthetic protein; HET: CXS; 2.39A {Streptomyces SP}

Probab=99.41  E-value=5.3e-12  Score=97.91  Aligned_cols=112  Identities=13%  Similarity=0.171  Sum_probs=85.9

Q ss_pred             ceEEEEcCCHHHHHHHhhcCCcccCCcCCCCeeeEEEEecccCCCCcEEEEEeecCCCCCcccchhcccccccccccccc
Q 038195            2 ETEVEIKSPADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSAGDFPATRTEEQTQSSHLRGLHYQWS   81 (172)
Q Consensus         2 ~~e~~i~apa~kvw~~~~d~~~~lpk~~P~~v~sve~~eGd~g~~Gsvr~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~   81 (172)
                      +.++.|++||+.||+++.|+. .+|+|+|. +.++++++++++  +..-.+....+|.                      
T Consensus         8 ~~si~I~ap~~~V~~~v~D~~-~~p~~~P~-~~~~~v~~~~~~--~~~~~~~~~~~G~----------------------   61 (172)
T 3tfz_A            8 EHTVTVAAPADLVWEVLADVL-GYADIFPP-TEKVEILEEGQG--YQVVRLHVDVAGE----------------------   61 (172)
T ss_dssp             EEEEEESSCHHHHHHHHHCGG-GHHHHCSS-EEEEEEEEEETT--EEEEEEEEEETTE----------------------
T ss_pred             EEEEEeCCCHHHHHHHHHhHH-HHHhhCcc-cceEEEEecCCC--EEEEEEEEecCCE----------------------
Confidence            578999999999999999985 89999996 999999987621  2222344444443                      


Q ss_pred             cceeeeeEEEEEecCCCceEEEEEEeCccccceeEEEEEEEEEecCCC-cEEEEEEEEEecCCC
Q 038195           82 QHFVEKMKEKVELDPENKTVAMVVIEGDLMKHFKSYKVIIKVIPKSEG-SLVKWIWEYEKLQED  144 (172)
Q Consensus        82 ~~~~~~~kEri~~D~~~~~i~Y~vieGdl~~~~~s~~~t~~v~p~~dG-s~v~w~~~ye~~~~~  144 (172)
                         ......++..|++.++|.|++++++-  +++.+..+|+|.|.++| |.|+|+.+|+..++.
T Consensus        62 ---~~~~~s~~~~~~~~~~i~~~~~~~~g--pf~~~~g~w~f~~~~~~~t~V~~~~~~~~~~~~  120 (172)
T 3tfz_A           62 ---INTWTSRRDLDPARRVIAYRQLETAP--IVGHMSGEWRAFTLDAERTQLVLTHDFVTRAAG  120 (172)
T ss_dssp             ---EEEEEEEEEEETTTTEEEEEEEECCT--TEEEEEEEEEEEEEETTEEEEEEEEEEEECCCC
T ss_pred             ---EEEEEEEEEEeCCCCEEEEEEeeCCC--ChhhcEEEEEEEECCCCcEEEEEEEEEEEcChh
Confidence               22234556688889999999997642  36889999999998754 999999999987653

>1t17_A Conserved hypothetical protein; beta-alpha-beta-BETA-beta-BETA-beta-BETA-helix, structural G protein structure initiative, PSI, NESG; NMR {Caulobacter crescentus} SCOP: d.129.3.6

Probab=99.33  E-value=7.2e-12  Score=94.05  Aligned_cols=110  Identities=13%  Similarity=0.255  Sum_probs=84.0

Q ss_pred             ceEEEEcCCHHHHHHHhhcCCcccCCcCCCCeeeEEEEecccCC--CCcEEEEEeecCCCCCcccchhcccccccccccc
Q 038195            2 ETEVEIKSPADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDWES--HGSVKSWTFSAGDFPATRTEEQTQSSHLRGLHYQ   79 (172)
Q Consensus         2 ~~e~~i~apa~kvw~~~~d~~~~lpk~~P~~v~sve~~eGd~g~--~Gsvr~~~~~~gg~~~~~~~~~~~~~~~~~~~~~   79 (172)
                      +.++.|++|++++|+++.|.. .+|+|+|. ++++++++.+..+  .+....++...++.                    
T Consensus         5 ~~s~~i~ap~~~v~~~v~D~~-~~p~~~p~-~~~~~v~~~~~~~g~~~~~~~~~~~~~~~--------------------   62 (148)
T 1t17_A            5 VVTKVLPYTPDQLFELVGDVD-AYPKFVPW-ITGMRTWNGRVDGAVSTVDAEAQVGFSFL--------------------   62 (148)
T ss_dssp             EEEEEESSCTHHHHHHHTTTT-CCSSCCSS-CCCCCEEEEEEETTEEEEEEEEECSTTSS--------------------
T ss_pred             EEEEEecCCHHHHHHHHHHHh-hHHhhCCC-cCeeEEEEecCCCCCceEEEEEEEEecce--------------------
Confidence            578899999999999999995 89999997 8888888743111  34555555544333                    


Q ss_pred             cccceeeeeEEEEEecCCCceEEEEEEeCccccceeEEEEEEEEEecCCCcEEEEEEEEEecC
Q 038195           80 WSQHFVEKMKEKVELDPENKTVAMVVIEGDLMKHFKSYKVIIKVIPKSEGSLVKWIWEYEKLQ  142 (172)
Q Consensus        80 ~~~~~~~~~kEri~~D~~~~~i~Y~vieGdl~~~~~s~~~t~~v~p~~dGs~v~w~~~ye~~~  142 (172)
                           .....-++..|+.+++|.+++++|++    +.+.++|+|.|.++||.|++.++|+..+
T Consensus        63 -----~~~~~~~v~~~~~~~~i~~~~~~G~f----~~~~g~w~f~~~~~gt~v~~~~~~~~~~  116 (148)
T 1t17_A           63 -----REKFATRVRRDKDARSIDVSLLYGPF----KRLNNGWRFMPEGDATRVEFVIEFAFKS  116 (148)
T ss_dssp             -----CCEEEEEEEEETTTCEEEEEESSTTS----SCEEEEEEEEEETTEEEEEEEEEECCSC
T ss_pred             -----eEEEEEEEEEcCCCcEEEEEECCCCh----hccEEEEEEEECCCCeEEEEEEEEEECc
Confidence                 12234566677777799999999853    6788999999998889999999999864

>3ijt_A SMU.440, putative uncharacterized protein; hypothetical protein, unknown function; 2.38A {Streptococcus mutans} SCOP: d.129.3.9 PDB: 2b79_A

Probab=99.24  E-value=3.9e-10  Score=87.01  Aligned_cols=101  Identities=8%  Similarity=0.097  Sum_probs=77.4

Q ss_pred             CceEEEEcCCHHHHHHHhhcCCcccCCcCCCCeeeEEEEecccCCCCcEEEEEeecCCCCCcccchhccccccccccccc
Q 038195            1 METEVEIKSPADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSAGDFPATRTEEQTQSSHLRGLHYQW   80 (172)
Q Consensus         1 ~~~e~~i~apa~kvw~~~~d~~~~lpk~~P~~v~sve~~eGd~g~~Gsvr~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~   80 (172)
                      ++.+++|+|||++||+++.|+. ..|.|.|. +.++++ +|. -.+|+.+.++...+..                     
T Consensus        20 i~~si~I~Appe~VW~~ltD~~-~~~~W~p~-v~~~~~-~G~-~~~G~~~~~~~~~~~~---------------------   74 (155)
T 3ijt_A           20 FSFELAVNTKKEDAWTYYSQVN-QWFVWEGD-LEQISL-EGE-FTTGQKGKMKMEDMPE---------------------   74 (155)
T ss_dssp             EEEEEEESSCHHHHHHHHHCGG-GGGGTSTT-EEEEEE-SSS-SSTTCEEEEEETTSCC---------------------
T ss_pred             EEEEEEEcCCHHHHHHHHhCcc-cccccchh-hEeeec-cCC-CCCCCEEEEEeCCCCc---------------------
Confidence            3678999999999999999985 89999996 888874 676 3789988887653333                     


Q ss_pred             ccceeeeeEEEEE-ecCCCceEEEEEEeCccccceeEEEEEEEEEecCCC-cEEEEEEEEE
Q 038195           81 SQHFVEKMKEKVE-LDPENKTVAMVVIEGDLMKHFKSYKVIIKVIPKSEG-SLVKWIWEYE  139 (172)
Q Consensus        81 ~~~~~~~~kEri~-~D~~~~~i~Y~vieGdl~~~~~s~~~t~~v~p~~dG-s~v~w~~~ye  139 (172)
                             +..+|+ +|+..+ ++|..   .++  ...|..+..++|.++| |+|+|+.+|.
T Consensus        75 -------~~~~v~~~~p~~~-~~~~~---~~p--~~~~~~~h~l~p~~~ggTrvt~~~~~~  122 (155)
T 3ijt_A           75 -------LAFTLVEVRENQC-FSDLT---ATP--FGNVLFEHEILENPDGTISLRHSVSLT  122 (155)
T ss_dssp             -------EEEEECCCBTTTE-EEEEE---EET--TEEEEEEEEEEECTTSCEEEEEEEEES
T ss_pred             -------EEEEEEEEeCCcE-EEEEE---ecC--CeEEEEEEEEEEcCCCcEEEEEEEEEE
Confidence                   567899 877765 77754   232  2356677788897554 9999999993

>2pcs_A Conserved protein; structural genomics, unknown function, ligand binding, PSI-2 structure initiative; HET: UNL; 2.40A {Geobacillus kaustophilus} SCOP: d.129.3.10

Probab=99.16  E-value=7.4e-10  Score=83.67  Aligned_cols=137  Identities=12%  Similarity=0.184  Sum_probs=84.9

Q ss_pred             ceEEEEcCCHHHHHHHhhcCCcccCCcCCCCeeeEEEEecccCCCCcEEEEEeecCCCCCcccchhcccccccccccccc
Q 038195            2 ETEVEIKSPADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSAGDFPATRTEEQTQSSHLRGLHYQWS   81 (172)
Q Consensus         2 ~~e~~i~apa~kvw~~~~d~~~~lpk~~P~~v~sve~~eGd~g~~Gsvr~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~   81 (172)
                      +.++.|+||+++||+++.|.. .+|+|+|. +.+++++.|+    +....++...|+.  .                   
T Consensus         6 ~~~~~i~ap~e~Vw~~l~D~e-~~~~w~p~-~~~~~~~~~~----~~~~~~~~~~g~~--~-------------------   58 (162)
T 2pcs_A            6 NGSIELKGTVEEVWSKLMDPS-ILSKCIMG-CKSLELIGED----KYKADLQIGIAAV--K-------------------   58 (162)
T ss_dssp             EEEEEEESCHHHHHHHHTCHH-HHHHHSTT-EEEEEEEETT----EEEEEEEECCGGG--C-------------------
T ss_pred             eeEEEecCCHHHHHHHhcCHH-HHHhhCCC-ceEeEEeCCC----eEEEEEEEEeeeE--E-------------------
Confidence            567899999999999999985 89999997 7888887543    1122233322221  0                   


Q ss_pred             cceeee-eEEEEE-ecCCCceEEEEEEeCccccceeEEEEEEEEEe-cCCCcEEEEEEEEEecCCCCCChhhh-----hH
Q 038195           82 QHFVEK-MKEKVE-LDPENKTVAMVVIEGDLMKHFKSYKVIIKVIP-KSEGSLVKWIWEYEKLQEDGPTPSKY-----VD  153 (172)
Q Consensus        82 ~~~~~~-~kEri~-~D~~~~~i~Y~vieGdl~~~~~s~~~t~~v~p-~~dGs~v~w~~~ye~~~~~~~~p~~~-----~~  153 (172)
                         ..+ ..-++. +|+. +++.++....+- .....+..+++|+| .++||.++|+++++..+........+     ..
T Consensus        59 ---~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~gT~v~~~~~~~~~g~l~~~~~~l~~~~~~~  133 (162)
T 2pcs_A           59 ---GKYDAIIEVTDIKPP-YHYKLLVNGEGG-PGFVNAEGVIDLTPINDECTQLTYTYSAEVGGKVAAIGQRMLGGVAKL  133 (162)
T ss_dssp             ---EEEEEEEEEEEEETT-TEEEEEEEEEET-TEEEEEEEEEEEEESSSSEEEEEEEEEEEEESGGGGGCHHHHHHHHHH
T ss_pred             ---EEEEEEEEEEecCCC-cEEEEEEEecCC-CccEEEEEEEEEEecCCCcEEEEEEEEEEECCCHHHhhHHHHHHHHHH
Confidence               111 123444 5654 456665542111 12345788999999 45569999999999876432222222     23


Q ss_pred             HHHHHHHHHHHHHhhcc
Q 038195          154 FVTDLTKNIDAHLLKEE  170 (172)
Q Consensus       154 ~~~~~~k~ie~ylla~~  170 (172)
                      .+..+++++.++|-+..
T Consensus       134 ~~~~~~~~lk~~~e~~~  150 (162)
T 2pcs_A          134 LISDFFKKIQKEIAKSK  150 (162)
T ss_dssp             HHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHhcccC
Confidence            55666777777776543

>2ns9_A Hypothetical protein APE2225; uncharacterized conserved protein, structural genomics, PSI, structure initiative; 1.80A {Aeropyrum pernix} SCOP: d.129.3.10

Probab=99.14  E-value=2e-09  Score=80.25  Aligned_cols=110  Identities=16%  Similarity=0.268  Sum_probs=70.4

Q ss_pred             ceEEEEcCCHHHHHHHhhcCCcccCCcCCCCeeeEEEEecccCCCCcEEEEEeecCCCCCcccchhcccccccccccccc
Q 038195            2 ETEVEIKSPADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSAGDFPATRTEEQTQSSHLRGLHYQWS   81 (172)
Q Consensus         2 ~~e~~i~apa~kvw~~~~d~~~~lpk~~P~~v~sve~~eGd~g~~Gsvr~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~   81 (172)
                      +.++.|+||+++||+++.|.. .+|+|+|. +++++ +.|+    +....++...++.  ..                  
T Consensus        16 ~~~~~i~ap~e~Vw~~l~D~~-~~~~w~p~-~~~~~-~~~~----~~~~~~~~~~g~~--~~------------------   68 (157)
T 2ns9_A           16 EGSFEVSKTPEEVFEFLTDPK-RFSRAFPG-FKSVE-VEDG----SFTIELRLSLGPL--RG------------------   68 (157)
T ss_dssp             EEEEEESSCHHHHHHHHTCHH-HHGGGSTT-EEEEE-EETT----EEEEEEEEESSSS--EE------------------
T ss_pred             eeEEEEcCCHHHHHHHHcCHH-HHHhhCCC-ceEEE-ECCC----EEEEEEEEEEcce--eE------------------
Confidence            568899999999999999985 78999997 77887 5443    1122223322321  00                  


Q ss_pred             cceeeeeEEEEE-ecCCCceEEEEEEeCccccceeEEEEEEEEEecCCCcEEEEEEEEEecCC
Q 038195           82 QHFVEKMKEKVE-LDPENKTVAMVVIEGDLMKHFKSYKVIIKVIPKSEGSLVKWIWEYEKLQE  143 (172)
Q Consensus        82 ~~~~~~~kEri~-~D~~~~~i~Y~vieGdl~~~~~s~~~t~~v~p~~dGs~v~w~~~ye~~~~  143 (172)
                         .-...-++. +++ .+++.|+....+....++ +..+++++|.++||.++|+.+|+..+.
T Consensus        69 ---~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~-~~~~~~l~~~~~gT~v~~~~~~~~~g~  126 (157)
T 2ns9_A           69 ---DARVRASFEDLEK-PSKATVKGSGRGAGSTLD-FTLRFAVEPSGGGSRVSWVFEGNVGGL  126 (157)
T ss_dssp             ---EEEEEEEEEEEET-TTEEEEEEEEECSSEEEE-EEEEEEEEEETTEEEEEEEEEEEEEEG
T ss_pred             ---EEEEEEEEEecCC-CcEEEEEEEecCCCccEE-EEEEEEEEeCCCcEEEEEEEEEEECcC
Confidence               011223444 555 456777643222111233 678999999886799999999987654

>3ggn_A Uncharacterized protein DR_A0006; structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 2.00A {Deinococcus radiodurans R1} PDB: 2kcz_A

Probab=98.99  E-value=8.9e-09  Score=78.18  Aligned_cols=105  Identities=21%  Similarity=0.276  Sum_probs=73.8

Q ss_pred             CceEEEEcCCHHHHHHHhhcCCcccCCcCCCCeeeEEEEecccCCCCcEEEEEeecC-C-CCCcccchhccccccccccc
Q 038195            1 METEVEIKSPADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSAG-D-FPATRTEEQTQSSHLRGLHY   78 (172)
Q Consensus         1 ~~~e~~i~apa~kvw~~~~d~~~~lpk~~P~~v~sve~~eGd~g~~Gsvr~~~~~~g-g-~~~~~~~~~~~~~~~~~~~~   78 (172)
                      ++.++.|+||+++||+++.|.. .+|+|+|. +.+++++.+.      ...|+.... | .                 . 
T Consensus         6 v~~s~~I~ap~e~V~~~~~D~e-~~p~w~p~-~~~v~~~~~~------~~~~~~~~~~G~~-----------------~-   59 (155)
T 3ggn_A            6 VRDAVTIGKPAEQLYAVWRDLP-GLPLLMTH-LRSVEVLDDK------RSRWTVEAPAPLG-----------------T-   59 (155)
T ss_dssp             EEEEEEESSCHHHHHHHHHCGG-GHHHHSTT-CCEEEECSSS------EEEEEEECCTTTC-----------------E-
T ss_pred             EEEEEEEcCCHHHHHHHHhCHH-HhHHHhhh-ceEEEEecCC------eeEEEEEecCCcc-----------------e-
Confidence            3678999999999999999985 89999996 8899887542      133444332 3 2                 1 


Q ss_pred             ccccceeeeeEEEEEecCCCceEEEEEEeCccccceeEEEEEEEEEec-CC-CcEEEEEEEEEecC
Q 038195           79 QWSQHFVEKMKEKVELDPENKTVAMVVIEGDLMKHFKSYKVIIKVIPK-SE-GSLVKWIWEYEKLQ  142 (172)
Q Consensus        79 ~~~~~~~~~~kEri~~D~~~~~i~Y~vieGdl~~~~~s~~~t~~v~p~-~d-Gs~v~w~~~ye~~~  142 (172)
                            ..+ .-++.-...++.|.++.++|..    ..+..+++|.|. ++ ||.|+++++|++.+
T Consensus        60 ------~~~-~~~v~e~~p~~~i~~~~~~g~~----~~~~g~~~F~~~~~~~gT~V~~~~~~~~~~  114 (155)
T 3ggn_A           60 ------VSW-EAELTADEPGKRIAWRSLPGAR----IENSGEVLFRPAPGARGTEVVVRLTYRPPG  114 (155)
T ss_dssp             ------EEE-EEEEEEEETTTEEEEEECTTCS----SCEEEEEEEEECSSSSCEEEEEEEEEC---
T ss_pred             ------EEE-EEEEEEecCCCEEEEEECCCCC----cceEEEEEEEECCCCCceEEEEEEEEECCC
Confidence                  222 3445533456778999988863    246678889988 34 69999999999865

>3p9v_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.78A {Marinobacter aquaeolei}

Probab=98.97  E-value=1.5e-08  Score=77.75  Aligned_cols=109  Identities=13%  Similarity=0.118  Sum_probs=75.4

Q ss_pred             ceEEEEcCCHHHHHHHhhcCCcccCCcCCCCeeeEEEEecccCCCCcEEEEEe---ecCCCCCcccchhccccccccccc
Q 038195            2 ETEVEIKSPADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTF---SAGDFPATRTEEQTQSSHLRGLHY   78 (172)
Q Consensus         2 ~~e~~i~apa~kvw~~~~d~~~~lpk~~P~~v~sve~~eGd~g~~Gsvr~~~~---~~gg~~~~~~~~~~~~~~~~~~~~   78 (172)
                      +.++.|++||+++|+++.|.. ..|.+.|+++ ..+- .++    | ...|..   ..|+.                 .+
T Consensus        10 ~~s~~I~ap~e~v~~lv~Dve-~w~~~yp~~~-p~~~-~~~----~-~~~~~~a~l~vg~~-----------------~~   64 (161)
T 3p9v_A           10 NRDLEIPASYDEVFDLLADVP-KSASHFPKVD-KLVD-LGN----N-AYRWEMEKVGVDKH-----------------AI   64 (161)
T ss_dssp             EEEEEESSCHHHHHHHHTCHH-HHHTTSTTEE-EEEE-EET----T-EEEEEECCBSSGGG-----------------CB
T ss_pred             EEEEEEcCCHHHHHHHHhChh-hhHhhCCCeE-EEEE-cCC----C-ceEEEEEEEeeeeE-----------------EE
Confidence            567889999999999999985 5566666532 2221 122    2 233443   22222                 00


Q ss_pred             ccccceeeeeEEEEEecCCCceEEEEEEeCccccceeEEEEEEEEEecCCC-cEEEEEEEEEecCCC
Q 038195           79 QWSQHFVEKMKEKVELDPENKTVAMVVIEGDLMKHFKSYKVIIKVIPKSEG-SLVKWIWEYEKLQED  144 (172)
Q Consensus        79 ~~~~~~~~~~kEri~~D~~~~~i~Y~vieGdl~~~~~s~~~t~~v~p~~dG-s~v~w~~~ye~~~~~  144 (172)
                            .....-+++.|+++++|.+++++|++.   ++..++|+|+|.++| |.|+|.++|+...+.
T Consensus        65 ------~~~~~s~~~~~~~~~~I~~~~~~g~~~---~~l~g~w~f~p~~~g~t~V~~~~~~e~~~pl  122 (161)
T 3p9v_A           65 ------QSVYACTYHADKEAGKITWSPIKGEGN---GVVSGSWTLSAKGDNATAVKFQTSAELTVPL  122 (161)
T ss_dssp             ------CCEEEEEEEEETTTTEEEEEECTTSTT---EEEEEEEEEEESSSSCEEEEEEEEEEEEECS
T ss_pred             ------EEEEEEEEEEcCCCCEEEEEEecCccc---eeEEEEEEEEECCCCeEEEEEEEEEEEcCcc
Confidence                  112345566778789999999988763   677889999999998 999999999998553

>1z94_A Conserved hypothetical protein; NESG, CV1439, structural genomics, PSI structure initiative; 2.10A {Chromobacterium violaceum} SCOP: d.129.3.5

Probab=98.77  E-value=4.2e-07  Score=66.63  Aligned_cols=135  Identities=16%  Similarity=0.086  Sum_probs=87.9

Q ss_pred             ceEEEEcCCHHHHHHHhhcCCcccCCcCCCCeeeEEEEecccCCCCcEEEEEee--cCCCCCcccchhcccccccccccc
Q 038195            2 ETEVEIKSPADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFS--AGDFPATRTEEQTQSSHLRGLHYQ   79 (172)
Q Consensus         2 ~~e~~i~apa~kvw~~~~d~~~~lpk~~P~~v~sve~~eGd~g~~Gsvr~~~~~--~gg~~~~~~~~~~~~~~~~~~~~~   79 (172)
                      +.++.|+||+++||+++.|.. .+++|+|..--.+...++| -.+|..-.+.+.  .+|.                    
T Consensus         6 ~~~~~i~ap~e~Vw~altd~~-~~~~W~~~~~~~~~~~~~~-~~~Gg~~~~~~~~~~~g~--------------------   63 (147)
T 1z94_A            6 RLHRVLSAPPERVYRAFLDPL-ALAKWLPPEGFVCKVLEHD-ARVGGAYKMEFLAFASGQ--------------------   63 (147)
T ss_dssp             EEEEEESSCHHHHHHHTTCHH-HHHHHSSCTTEEEEEEEEC-CSTTCEEEEEEEETTTCC--------------------
T ss_pred             EEEEEeCCCHHHHHHHhCCHH-HHhhccCCCCEeeeEEEEc-cCCCcEEEEEEEECCCCC--------------------
Confidence            567899999999999999974 7899997532223445566 367776666654  2332                    


Q ss_pred             cccceeeeeEEEEE-ecCCCceEEEEEEeCccccceeEEEEEEEEEecCCCcEEEEEEEEEecCCCCCChhhhhHHHHHH
Q 038195           80 WSQHFVEKMKEKVE-LDPENKTVAMVVIEGDLMKHFKSYKVIIKVIPKSEGSLVKWIWEYEKLQEDGPTPSKYVDFVTDL  158 (172)
Q Consensus        80 ~~~~~~~~~kEri~-~D~~~~~i~Y~vieGdl~~~~~s~~~t~~v~p~~dGs~v~w~~~ye~~~~~~~~p~~~~~~~~~~  158 (172)
                           .-...-++. +++ ++.+.|+...++-. .-.....++.++|.++||.++++..+.+..   ............+
T Consensus        64 -----~~~~~~~v~~~~p-~~~l~~~~~~~~~~-~~~~~~~~~~l~~~~~gT~l~~~~~~~~~~---~~~~~~~~gw~~~  133 (147)
T 1z94_A           64 -----KHAFGGRYLELVP-GERIRYTDRFDDAG-LPGDMITTITLAPLSCGADLSIVQEGIPDA---IPPENCYLGWQQS  133 (147)
T ss_dssp             -----EEEEEEEEEEEET-TTEEEEEEEESCCC----CEEEEEEEEEETTEEEEEEEEECCCTT---SCHHHHHHHHHHH
T ss_pred             -----EEEEEEEEEEEcC-CCEEEEEEEEeCCC-CCCcEEEEEEEEecCCCEEEEEEEEcCCch---hhHHHHHHHHHHH
Confidence                 112455666 765 56788887655310 011356788999988789999998875321   1233344566777


Q ss_pred             HHHHHHHHhh
Q 038195          159 TKNIDAHLLK  168 (172)
Q Consensus       159 ~k~ie~ylla  168 (172)
                      +..|.+||-+
T Consensus       134 L~~L~~~le~  143 (147)
T 1z94_A          134 LKQLAALVEP  143 (147)
T ss_dssp             HHHHHHHHSC
T ss_pred             HHHHHHHHHh
Confidence            8888888754

>2lcg_A Uncharacterized protein; start domain, structural genomics, northeast structural GENO consortium, NESG, unknown function, AHSA1; NMR {Ralstonia metallidurans}

Probab=98.64  E-value=1.3e-06  Score=64.75  Aligned_cols=128  Identities=11%  Similarity=0.124  Sum_probs=83.8

Q ss_pred             ceEEEEcCCHHHHHHHhhcCCcccCCc-CCCCeeeEEEEecccCCCCcEEEEEeec-CCCCCcccchhcccccccccccc
Q 038195            2 ETEVEIKSPADKFYNTFSSKAHTVPNM-SPGNLHGVEVHEGDWESHGSVKSWTFSA-GDFPATRTEEQTQSSHLRGLHYQ   79 (172)
Q Consensus         2 ~~e~~i~apa~kvw~~~~d~~~~lpk~-~P~~v~sve~~eGd~g~~Gsvr~~~~~~-gg~~~~~~~~~~~~~~~~~~~~~   79 (172)
                      +.++.|+||+++||+++.|.. .+++| .+..--.+...++| -.+|..-.+.+.. +|.                    
T Consensus         4 ~~~~~i~ap~e~Vw~altd~~-~~~~W~~~~~~~~~~~~~~d-~~~Gg~~~~~~~~~~g~--------------------   61 (142)
T 2lcg_A            4 TVETTVAAPVGKVWRAYTTPE-DIKQWNAASDDWHTTAATVD-LREGGAFSSRMEAKDGS--------------------   61 (142)
T ss_dssp             EEEEEESSCHHHHHHHTTCHH-HHHHHCCSSTTEEEEEEEEC-CSTTCEEEEEEEETTSS--------------------
T ss_pred             EEEEEeCCCHHHHHHHhCCHH-HHhcCCCCCCCccceeeEEc-cccCCEEEEEEEcCCCC--------------------
Confidence            568899999999999999974 78899 65322233445566 3677766665543 221                    


Q ss_pred             cccceeeeeEEEEE-ecCCCceEEEEEEeCccccceeEEEEEEEEEecCCCcEEEEEEEEEecCCCCCChhhhhHHHHHH
Q 038195           80 WSQHFVEKMKEKVE-LDPENKTVAMVVIEGDLMKHFKSYKVIIKVIPKSEGSLVKWIWEYEKLQEDGPTPSKYVDFVTDL  158 (172)
Q Consensus        80 ~~~~~~~~~kEri~-~D~~~~~i~Y~vieGdl~~~~~s~~~t~~v~p~~dGs~v~w~~~ye~~~~~~~~p~~~~~~~~~~  158 (172)
                          ..-...-++. +++ .+.|.|+. .|        ...++.++|.++||.++++..+.  .  ....+...+.....
T Consensus        62 ----~~~~~~~~v~~~~p-~~~l~~~~-~g--------~~~~~~l~~~~~gT~l~~~~~~~--~--~~~~~~~~~Gw~~~  123 (142)
T 2lcg_A           62 ----MGFDFAGTYTKVVE-NKRIEYAF-GD--------RTAKVEFLEAPQGVTVRVSFVAE--T--EYPVEQQQQGWQAI  123 (142)
T ss_dssp             ----CEEEEEEEEEEEET-TTEEEEEE-TT--------EEEEEEEEEETTEEEEEEEEECC--S--SSCHHHHHHHHHHH
T ss_pred             ----ceeeeEEEEEEEcC-CCEEEEEc-CC--------CEEEEEEEEcCCCEEEEEEEecC--C--HHHHHHHHHHHHHH
Confidence                0112455666 776 45677875 11        56788999988789999887662  1  12234444566777


Q ss_pred             HHHHHHHHhhc
Q 038195          159 TKNIDAHLLKE  169 (172)
Q Consensus       159 ~k~ie~ylla~  169 (172)
                      +..|++||-..
T Consensus       124 L~~L~~~le~~  134 (142)
T 2lcg_A          124 LNNFKRHVESH  134 (142)
T ss_dssp             HHHHHHHHHHS
T ss_pred             HHHHHHHHHHH
Confidence            88888887653

>2leq_A Uncharacterized protein; start domains, structural genomics, PSI-biology, protein STR initiative; NMR {Cytophaga hutchinsonii}

Probab=98.60  E-value=9.4e-07  Score=64.35  Aligned_cols=132  Identities=11%  Similarity=0.099  Sum_probs=83.4

Q ss_pred             ceEEEEcCCHHHHHHHhhcCCcccCCcCCCCeeeEEEEecccCCCCcEEEEEeecCCCCCcccchhcccccccccccccc
Q 038195            2 ETEVEIKSPADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSAGDFPATRTEEQTQSSHLRGLHYQWS   81 (172)
Q Consensus         2 ~~e~~i~apa~kvw~~~~d~~~~lpk~~P~~v~sve~~eGd~g~~Gsvr~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~   81 (172)
                      +.++.|+||+++||+++.|.. .+++|++...     .+++ -.+|....+++..++.                      
T Consensus         8 ~~~~~i~ap~e~Vw~~ltd~~-~~~~W~~~~~-----~~~~-~~~G~~~~~~~~~~g~----------------------   58 (146)
T 2leq_A            8 QVKTVINAPIEKVWEALVNPE-IIKEYMFGTT-----VVSD-WKEGSQIVWKGEWKGK----------------------   58 (146)
T ss_dssp             EEEEEECSCHHHHHHHHSCTT-HHHHHSSSCE-----EECC-CSTTCEEEEEEEETTE----------------------
T ss_pred             EEEEEECCCHHHHHHHHcCHH-HhceeEcCCc-----ceec-cCCCCEEEEEecCCCc----------------------
Confidence            578899999999999999985 7899963222     2455 2567666666654442                      


Q ss_pred             cceeeeeEEEEE-ecCCCceEEEEEEeC--cccc-ceeEEEEEEEEEecCCCcEEEEEEEEEecCCCCCChhhhhHHHHH
Q 038195           82 QHFVEKMKEKVE-LDPENKTVAMVVIEG--DLMK-HFKSYKVIIKVIPKSEGSLVKWIWEYEKLQEDGPTPSKYVDFVTD  157 (172)
Q Consensus        82 ~~~~~~~kEri~-~D~~~~~i~Y~vieG--dl~~-~~~s~~~t~~v~p~~dGs~v~w~~~ye~~~~~~~~p~~~~~~~~~  157 (172)
                         .-.+..++. +++ ++.+.|+....  ++.. .-.....++.++|.++||.++|+.+..+..   ............
T Consensus        59 ---~~~~~~~v~~~~p-~~~l~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~gT~l~~~~~~~~~~---~~~~~~~~gw~~  131 (146)
T 2leq_A           59 ---AYEDKGTILQFNE-RSILQYSHFSPLTGKPDLPENYHVVTITLTALKKGVEVELTQDNNETE---KEQKHSEDNWNT  131 (146)
T ss_dssp             ---EEEEEEEEEEEET-TTEEEEECBCGGGCCCSCGGGSCEEEEEEEECSSCEEEEEEEEEESSH---HHHHHHHHHHHH
T ss_pred             ---eecccEEEEEEcC-CCEEEEEEccCccCCCCCCCCceEEEEEEEEcCCCeEEEEEEecCCch---hhHhhHHhhHHH
Confidence               112456677 776 55677776532  1110 112456788999988889999887644311   011223345667


Q ss_pred             HHHHHHHHHhhc
Q 038195          158 LTKNIDAHLLKE  169 (172)
Q Consensus       158 ~~k~ie~ylla~  169 (172)
                      ++..|.+||-..
T Consensus       132 ~l~~Lk~~le~~  143 (146)
T 2leq_A          132 MLEGLKKFLENK  143 (146)
T ss_dssp             HHHHHHHHHGGG
T ss_pred             HHHHHHHHHhcc
Confidence            778888887653

>1xn6_A Hypothetical protein BC4709; structural genomics, protein structure initiative, PSI, NESG target protein BCR68, alpha + beta; NMR {Bacillus cereus} SCOP: d.129.3.5

Probab=98.51  E-value=4e-07  Score=67.36  Aligned_cols=93  Identities=10%  Similarity=-0.020  Sum_probs=65.3

Q ss_pred             ceEEEEcCCHHHHHHHhhcCCcccCCcCCCCeeeEEEEecccCCCCcEEEEEeecCCCCCcccchhcccccccccccccc
Q 038195            2 ETEVEIKSPADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSAGDFPATRTEEQTQSSHLRGLHYQWS   81 (172)
Q Consensus         2 ~~e~~i~apa~kvw~~~~d~~~~lpk~~P~~v~sve~~eGd~g~~Gsvr~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~   81 (172)
                      +.++.|+||+++||+++.|.. .+++|+|.       .+++ -.+|....+.+ .+|.                      
T Consensus        11 ~~~~~i~ap~e~Vw~~ltd~~-~~~~W~~~-------~~~~-~~~G~~~~~~~-~~g~----------------------   58 (143)
T 1xn6_A           11 KQTIVFNASIQKVWSVVSTAE-GIASWFMP-------NDFV-LEVGHEFHVQS-PFGP----------------------   58 (143)
T ss_dssp             EEEEEESSCHHHHHHTTSCSH-HHHTTSCC-------BCCC-CCTTCEECBCC-TTCC----------------------
T ss_pred             EEEEEEcCCHHHHHHHHhCHh-HHHHhcCC-------CCcC-cCCCCEEEEEE-cCCC----------------------
Confidence            578899999999999999985 78999996       2344 35666554444 2222                      


Q ss_pred             cceeeeeEEEEE-ecCCCceEEEEEEeCccccceeEEEEEEEEEecCC-CcEEEEEEEEEe
Q 038195           82 QHFVEKMKEKVE-LDPENKTVAMVVIEGDLMKHFKSYKVIIKVIPKSE-GSLVKWIWEYEK  140 (172)
Q Consensus        82 ~~~~~~~kEri~-~D~~~~~i~Y~vieGdl~~~~~s~~~t~~v~p~~d-Gs~v~w~~~ye~  140 (172)
                            +.-++. +++ ++.+.|+...+       ....+++++|.++ ||.++++....+
T Consensus        59 ------~~~~v~e~~p-~~~l~~~~~~~-------~~~~~~~l~~~~~g~T~l~~~~~~~~  105 (143)
T 1xn6_A           59 ------SPCKVLEIDE-PNHLSFSWDTD-------GWVVSFDLKDLGDNKTEFTLIHGGWK  105 (143)
T ss_dssp             ------CCEEEEEEET-TTEEEEEETTT-------TEEEEEEEEEEETTEEEEEEEEECCC
T ss_pred             ------ceEEEEEEeC-CCEEEEEEeCC-------CEEEEEEEEECCCCcEEEEEEEEccC
Confidence                  345666 877 45678876433       2456788999888 598888777444

>1xuv_A Hypothetical protein MM0500; alpha-beta protein, northeast structural genomics consortium, NESG, structural genomics; 2.10A {Methanosarcina mazei GO1} SCOP: d.129.3.5

Probab=98.46  E-value=1.1e-05  Score=62.01  Aligned_cols=135  Identities=7%  Similarity=0.000  Sum_probs=82.7

Q ss_pred             ceEEEEcCCHHHHHHHhhcCCcccCCcCCCCeeeEEEEecccCCCCcEEEEEeec-CCCCCcccchhccccccccccccc
Q 038195            2 ETEVEIKSPADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSA-GDFPATRTEEQTQSSHLRGLHYQW   80 (172)
Q Consensus         2 ~~e~~i~apa~kvw~~~~d~~~~lpk~~P~~v~sve~~eGd~g~~Gsvr~~~~~~-gg~~~~~~~~~~~~~~~~~~~~~~   80 (172)
                      +.++.|+||+++||+++.|.. .+++|++..=-.+...++| -.+|..-.+.+.. +|.                     
T Consensus        25 ~~~r~i~Ap~e~Vw~altdpe-~~~~W~~~~~~~~~~~~~d-~~~Gg~~~~~~~~~~G~---------------------   81 (178)
T 1xuv_A           25 IITREFDAPRELVFKAFTDPD-LYTQWIGPRGFTTALKIFE-PKNGGSWQYIQKDPEGN---------------------   81 (178)
T ss_dssp             EEEEEESSCHHHHHHHHHCHH-HHTTTCSSTTCEEEEEEEC-CSTTCEEEEEEECTTSC---------------------
T ss_pred             EEEEEECCCHHHHHHHhCCHH-HHHhCCCCCCccceEEEEe-cccCCEEEEEEECCCCC---------------------
Confidence            567889999999999999974 7899975421224445566 3567665555432 333                     


Q ss_pred             ccceeeeeEEEEE-ecCCCceEEEEEEeCccccceeEEEEEEEEEecC-CCcEEEEEEEEEecCCCCCChhhh-----hH
Q 038195           81 SQHFVEKMKEKVE-LDPENKTVAMVVIEGDLMKHFKSYKVIIKVIPKS-EGSLVKWIWEYEKLQEDGPTPSKY-----VD  153 (172)
Q Consensus        81 ~~~~~~~~kEri~-~D~~~~~i~Y~vieGdl~~~~~s~~~t~~v~p~~-dGs~v~w~~~ye~~~~~~~~p~~~-----~~  153 (172)
                          .-...-++. +++. ++|.|+..-++....-.....++.|+|.+ +||.++++..|....    ..+..     .+
T Consensus        82 ----~~~~~~~v~e~~p~-~rl~~~~~~~~~~~~~~~~~v~~~l~~~~~ggT~lt~~~~~~~~~----~~~~~~~~~~~~  152 (178)
T 1xuv_A           82 ----EYAFHGVNHDVTEP-ERIISTFEFEGLPEKGHVILDTARFEALPGDRTKLTSHSVFQTIE----DRDGMLQSGMEE  152 (178)
T ss_dssp             ----EEEEEEEEEEEETT-TEEEEEEEETTSSSSCCCEEEEEEEEEETTTEEEEEEEEECSSHH----HHHHHHHTTHHH
T ss_pred             ----EEEEEEEEEEEeCC-CEEEEEEEecCCCCCCCcEEEEEEEEEcCCCCEEEEEEEEeCCHH----HHHHHHHHhHHH
Confidence                112455666 7664 55777765443221012356788999988 469999988852110    01112     23


Q ss_pred             HHHHHHHHHHHHHhh
Q 038195          154 FVTDLTKNIDAHLLK  168 (172)
Q Consensus       154 ~~~~~~k~ie~ylla  168 (172)
                      ....++..|.+||-+
T Consensus       153 Gw~~~L~~Lk~~le~  167 (178)
T 1xuv_A          153 GINDSYERLDELLEK  167 (178)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHh
Confidence            456677788887754

>2il5_A Hypothetical protein; structural genomics, APC23650, PSI-2, structure initiative; 2.30A {Staphylococcus aureus subsp} SCOP: d.129.3.5

Probab=98.45  E-value=6.6e-06  Score=62.45  Aligned_cols=138  Identities=12%  Similarity=0.055  Sum_probs=84.7

Q ss_pred             ceEEEEcCCHHHHHHHhhcCCcccCCcCCCCeeeEEEEecccCCCCcEEEEEee-cCCCCCcccchhccccccccccccc
Q 038195            2 ETEVEIKSPADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFS-AGDFPATRTEEQTQSSHLRGLHYQW   80 (172)
Q Consensus         2 ~~e~~i~apa~kvw~~~~d~~~~lpk~~P~~v~sve~~eGd~g~~Gsvr~~~~~-~gg~~~~~~~~~~~~~~~~~~~~~~   80 (172)
                      +.++.|+||+++||+++.|.. .+++|.+..--.+...++| -.+|..-.+.+. .+|.                     
T Consensus        17 ~~~~~i~ap~e~Vw~altdp~-~~~~W~~p~~~~~~~~~~d-~~~Gg~~~~~~~~~~G~---------------------   73 (171)
T 2il5_A           17 EIEKLYKFSPELVYEAWTKKD-LLKQWFMTSARTNKEIEAD-VKEGGKYRIVDQQRNGK---------------------   73 (171)
T ss_dssp             EEEEEESSCHHHHHHHTTCHH-HHTTTSSSCTTTEEEEEEC-CSTTCEEEEEEECGGGC---------------------
T ss_pred             EEEEEeCCCHHHHHHHHCCHH-HHHhccCCCCccceEEEec-ccCCCEEEEEEECCCCC---------------------
Confidence            567889999999999999974 7889986422234455666 357766555543 2232                     


Q ss_pred             ccceeeeeEEEEE-ecCCCceEEEEEEeCccccceeEEEEEEEEEecCC-CcEEEEEEEEEecCC-CCCC----------
Q 038195           81 SQHFVEKMKEKVE-LDPENKTVAMVVIEGDLMKHFKSYKVIIKVIPKSE-GSLVKWIWEYEKLQE-DGPT----------  147 (172)
Q Consensus        81 ~~~~~~~~kEri~-~D~~~~~i~Y~vieGdl~~~~~s~~~t~~v~p~~d-Gs~v~w~~~ye~~~~-~~~~----------  147 (172)
                          .-...-++. +++ .+.+.|+...++...  .....++.++|.++ ||.++++....+..+ ....          
T Consensus        74 ----~~~~~~~v~e~~p-~~rl~~~~~~~~~~~--~~~~~~~~l~~~~~g~T~l~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (171)
T 2il5_A           74 ----VNVIEGIYESLVM-DEYVKMTIGMPGLSE--TQDVIEVEFFERETGGTQMLFYYRSLVEKERRFTNLEYKQKKKEY  146 (171)
T ss_dssp             ----EEEEEEEEEEEET-TTEEEEEESCC--CC--CCEEEEEEEEECSSSSEEEEEEEEEEECCCTTCCHHHHHHHHHHH
T ss_pred             ----EEEEEEEEEEEcC-CCEEEEEEEecCCCC--CcEEEEEEEEECCCCCEEEEEEEEeccCcccccccchhccchhHH
Confidence                112455666 765 556778775444321  13567889999988 699999886544311 0000          


Q ss_pred             hhhhhHHHHHHHHHHHHHHhhc
Q 038195          148 PSKYVDFVTDLTKNIDAHLLKE  169 (172)
Q Consensus       148 p~~~~~~~~~~~k~ie~ylla~  169 (172)
                      .+...+....++..|.+||-+.
T Consensus       147 ~~~~~~Gw~~~L~~L~~~le~~  168 (171)
T 2il5_A          147 HDAMVHGFELMFDKMYHVIETS  168 (171)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHhhc
Confidence            1112234566778888887654

>2l8o_A Uncharacterized protein; mixed alpha-beta protein, PSI-biology, structural genomics, structure initiative; NMR {Cytophaga hutchinsonii}

Probab=98.38  E-value=1.1e-05  Score=60.16  Aligned_cols=130  Identities=10%  Similarity=0.092  Sum_probs=81.8

Q ss_pred             CceEEEEcCCHHHHHHHhhcCCcccCCc-CCCCeeeEEEEecccCCCCcEEEEEeec-CCCCCcccchhccccccccccc
Q 038195            1 METEVEIKSPADKFYNTFSSKAHTVPNM-SPGNLHGVEVHEGDWESHGSVKSWTFSA-GDFPATRTEEQTQSSHLRGLHY   78 (172)
Q Consensus         1 ~~~e~~i~apa~kvw~~~~d~~~~lpk~-~P~~v~sve~~eGd~g~~Gsvr~~~~~~-gg~~~~~~~~~~~~~~~~~~~~   78 (172)
                      ++.++.|+||+++||+++.|.. .+++| ++..=-.+...++|. .+|..-.+.+.. +|.                   
T Consensus         4 i~~~~~i~Ap~e~Vw~altdpe-~~~~W~~~p~~~~~~~~~~d~-~~Gg~~~~~~~~~~G~-------------------   62 (144)
T 2l8o_A            4 ITVEVTVYAAIEKVWKYWNEPA-HIMKWCQASPEWHVPAAQNDL-KAGGTFTTTMAAKDGS-------------------   62 (144)
T ss_dssp             EEEEEEECSCHHHHHHHHHCHH-HHHHHSTTCTTCEEEEEECCC-STTCEEEEEEECTTSS-------------------
T ss_pred             EEEEEEECCCHHHHHHHHCCHH-HHhhccCCCCCcccceeEEcc-CCCCEEEEEEECCCCC-------------------
Confidence            3568899999999999999974 78999 653212344556773 566555544432 232                   


Q ss_pred             ccccceeeeeEEEEE-ecCCCceEEEEEEeCccccceeEEEEEEEEEecCCCcEEEEEEEEEecCCCCCChhhhhHHHHH
Q 038195           79 QWSQHFVEKMKEKVE-LDPENKTVAMVVIEGDLMKHFKSYKVIIKVIPKSEGSLVKWIWEYEKLQEDGPTPSKYVDFVTD  157 (172)
Q Consensus        79 ~~~~~~~~~~kEri~-~D~~~~~i~Y~vieGdl~~~~~s~~~t~~v~p~~dGs~v~w~~~ye~~~~~~~~p~~~~~~~~~  157 (172)
                           ..-.+.-++. +++. ++|.|+. .|       ....++.++|.++||.++++..+    ......+...+....
T Consensus        63 -----~~~~~~g~v~e~~p~-~~l~~~~-~g-------~~~v~~~l~~~~~gT~l~~~~~~----~~~~~~~~~~~Gw~~  124 (144)
T 2l8o_A           63 -----MSFDFGGVYDQVKTN-DLIEYTI-GD-------GRKVRIVFTHTGDTTNIVESFDP----EETNPRELQQSGWQA  124 (144)
T ss_dssp             -----CEEEEEEEEEEEETT-TEEEEEE-TT-------CCEEEEEEEECSSSEEEEEEECC----CSSSCHHHHHHHHHH
T ss_pred             -----ceeeeeEEEEEEeCC-CEEEEEe-CC-------CeEEEEEEEEcCCCEEEEEEEeC----CCHHHHHHHHHHHHH
Confidence                 0011345666 7764 5577874 22       24568899998878988887654    111223334456677


Q ss_pred             HHHHHHHHHhhc
Q 038195          158 LTKNIDAHLLKE  169 (172)
Q Consensus       158 ~~k~ie~ylla~  169 (172)
                      ++..|++||-..
T Consensus       125 ~L~~L~~~le~~  136 (144)
T 2l8o_A          125 ILNSFKSYTENN  136 (144)
T ss_dssp             HHHHHHHHHGGG
T ss_pred             HHHHHHHHHHhH
Confidence            788888887653

>3rd6_A MLL3558 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, unknown function; 2.80A {Mesorhizobium loti}

Probab=98.38  E-value=1.7e-05  Score=60.17  Aligned_cols=135  Identities=16%  Similarity=0.197  Sum_probs=82.2

Q ss_pred             ceEEEEcCCHHHHHHHhhcCCcccCCcCCCC--eeeEEEEecccCCCCcEEEEEeec-CCCCCcccchhccccccccccc
Q 038195            2 ETEVEIKSPADKFYNTFSSKAHTVPNMSPGN--LHGVEVHEGDWESHGSVKSWTFSA-GDFPATRTEEQTQSSHLRGLHY   78 (172)
Q Consensus         2 ~~e~~i~apa~kvw~~~~d~~~~lpk~~P~~--v~sve~~eGd~g~~Gsvr~~~~~~-gg~~~~~~~~~~~~~~~~~~~~   78 (172)
                      +.+..|+||+++||+++.|.. .+++|++..  + .+...++| -.+|..-.+.+.. +|.                   
T Consensus        11 ~~~r~i~Ap~e~Vw~altdp~-~~~~W~~~~~~~-~~~~~~~d-~~~Gg~~~~~~~~~~G~-------------------   68 (161)
T 3rd6_A           11 TIERTYPQSPDRVFHAFADKA-TVRRWRVDGDGF-TVAEFSFD-FRVGGGEVSRFSYGGGP-------------------   68 (161)
T ss_dssp             EEEEEESSCHHHHHHHHHCHH-HHHHHTCCCCC----CEEEEC-CSTTCEEEEEECSTTSC-------------------
T ss_pred             EEEEEECCCHHHHHHHhcCHH-HHhhccCCCCCc-eeeEEEEc-cCcCCEEEEEEECCCCC-------------------
Confidence            457789999999999999974 788999542  2 22334566 3566655555432 232                   


Q ss_pred             ccccceeeeeEEEEE-ecCCCceEEEEEEe--CccccceeEEEEEEEEEecCCCcEEEEEEEEEecCCCCCChhhhhHHH
Q 038195           79 QWSQHFVEKMKEKVE-LDPENKTVAMVVIE--GDLMKHFKSYKVIIKVIPKSEGSLVKWIWEYEKLQEDGPTPSKYVDFV  155 (172)
Q Consensus        79 ~~~~~~~~~~kEri~-~D~~~~~i~Y~vie--Gdl~~~~~s~~~t~~v~p~~dGs~v~w~~~ye~~~~~~~~p~~~~~~~  155 (172)
                            .-.+.-++. +++.. ++.|+..-  .+.  .......++.++|.++||.++++..+....+. ...+...+.-
T Consensus        69 ------~~~~~g~v~e~~p~~-rl~~~~~~~~~~~--~~~~s~v~~~l~~~~~gT~lt~~~~~~~~~~~-~~~~~~~~GW  138 (161)
T 3rd6_A           69 ------EVRLDAQFQDIVPDQ-RIVFSYRMAIGPQ--PMSASLTTVELTPSGDGTRLTYTEQGAFFDGV-DSAKGREEGT  138 (161)
T ss_dssp             ------CEEEEEEEEEEETTT-EEEEEEEEEETTE--EEEEEEEEEEEEEETTEEEEEEEEEEEEETTC-CCHHHHHHHH
T ss_pred             ------EEEEEEEEEEEcCCC-EEEEEEEecCCCC--CCCceEEEEEEEECCCCEEEEEEEEecCcchh-hhHHHHHHHH
Confidence                  112445666 76643 45666532  221  12345678899999888999999887533311 2234455566


Q ss_pred             HHHHHHHHHHHhh
Q 038195          156 TDLTKNIDAHLLK  168 (172)
Q Consensus       156 ~~~~k~ie~ylla  168 (172)
                      ..++..|++||..
T Consensus       139 ~~~L~~L~~~le~  151 (161)
T 3rd6_A          139 RGLLEALAAELQK  151 (161)
T ss_dssp             HHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHhh
Confidence            7777888887754

>3put_A Hypothetical conserved protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium; 1.83A {Rhizobium etli cfn 42} PDB: 3otl_A*

Probab=98.38  E-value=1.7e-05  Score=60.71  Aligned_cols=137  Identities=9%  Similarity=0.082  Sum_probs=83.5

Q ss_pred             ceEEEEcCCHHHHHHHhhcCCcccCCcCCCC-eeeEEEEecccCCCCcEEEEEee-cCCCCCcccchhcccccccccccc
Q 038195            2 ETEVEIKSPADKFYNTFSSKAHTVPNMSPGN-LHGVEVHEGDWESHGSVKSWTFS-AGDFPATRTEEQTQSSHLRGLHYQ   79 (172)
Q Consensus         2 ~~e~~i~apa~kvw~~~~d~~~~lpk~~P~~-v~sve~~eGd~g~~Gsvr~~~~~-~gg~~~~~~~~~~~~~~~~~~~~~   79 (172)
                      +.+..|+||+++||+++.|.. .+.+|++.. --.+...++|. .+|..-.+.+. .+|.                    
T Consensus        12 ~~~r~i~Ap~e~Vw~a~Tdpe-~l~~W~~~~~~~~~~~~~~d~-~~GG~~~~~~~~~~G~--------------------   69 (166)
T 3put_A           12 VIERRLTAPVARVFRAWSTPE-SKRQWFACHGEWVPLEYALDF-RPGGTERNYTADTDGL--------------------   69 (166)
T ss_dssp             EEEEEESSCHHHHHHHHHCHH-HHHHHHTCC---CCSEEEECC-STTCEEEEEEECTTSC--------------------
T ss_pred             EEEEEECCCHHHHHHHhCCHH-HHHhcCCCCCCceeeEEEeCc-ccCCEEEEEEECCCCC--------------------
Confidence            467889999999999999974 788997431 01122234552 45554444442 3343                    


Q ss_pred             cccceeeeeEEEEE-ecCCCceEEEEEEe--CccccceeEEEEEEEEEecCCCcEEEEEEEEEecCCCCCChhhhhHHHH
Q 038195           80 WSQHFVEKMKEKVE-LDPENKTVAMVVIE--GDLMKHFKSYKVIIKVIPKSEGSLVKWIWEYEKLQEDGPTPSKYVDFVT  156 (172)
Q Consensus        80 ~~~~~~~~~kEri~-~D~~~~~i~Y~vie--Gdl~~~~~s~~~t~~v~p~~dGs~v~w~~~ye~~~~~~~~p~~~~~~~~  156 (172)
                           .-.+.-++. +++. ++|.|+..-  ++-  .......++.|+|.++||+++++-......+. .......+.-.
T Consensus        70 -----~~~~~g~v~ev~p~-~rlv~t~~~~~~~~--~~~~s~vt~~l~~~~~gT~ltl~~~~~~~~~~-~~~~~~~~GW~  140 (166)
T 3put_A           70 -----LHAYDARYIDIVPD-TRIIYAYEMKLGQT--RISASLVTVAFDVEPSGTRMVFTEQVVFLDGY-GDNGARLQGTE  140 (166)
T ss_dssp             -----EEEEEEEEEEEETT-TEEEEEEEEEETTE--EEEEEEEEEEEEECSSSEEEEEEEEEEEETTC-CCTTHHHHHHH
T ss_pred             -----EEEEEEEEEEEcCC-cEEEEEEEecCCCC--CCCceEEEEEEEECCCCEEEEEEEEecCccch-hhHHHHHHHHH
Confidence                 112455666 7664 345555432  221  12345678899999888999998877643321 12334456677


Q ss_pred             HHHHHHHHHHhhc
Q 038195          157 DLTKNIDAHLLKE  169 (172)
Q Consensus       157 ~~~k~ie~ylla~  169 (172)
                      .++..|++||-..
T Consensus       141 ~~L~~L~~~le~~  153 (166)
T 3put_A          141 IGLDNLELFLVRE  153 (166)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcC
Confidence            7888999998654

>2ldk_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Arthrobacter aurescens}

Probab=98.36  E-value=7.1e-06  Score=62.55  Aligned_cols=136  Identities=9%  Similarity=0.067  Sum_probs=83.2

Q ss_pred             ceEEEEcCCHHHHHHHhhcCCcccCCcCCCCeeeEEEEecccCCCCcEEEEEeec-CCCCCcccchhccccccccccccc
Q 038195            2 ETEVEIKSPADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSA-GDFPATRTEEQTQSSHLRGLHYQW   80 (172)
Q Consensus         2 ~~e~~i~apa~kvw~~~~d~~~~lpk~~P~~v~sve~~eGd~g~~Gsvr~~~~~~-gg~~~~~~~~~~~~~~~~~~~~~~   80 (172)
                      +.++.|+||+++||+++.|.. .+++|++..=-.+...++| -.+|..-.+.+.. +|.                     
T Consensus        15 ~~~~~i~Ap~e~Vw~altdp~-~~~~W~~p~~~~~~~~~~d-~~~Gg~~~~~~~~~~g~---------------------   71 (172)
T 2ldk_A           15 SIVAEFDADVKRVWAIWEDPR-QLERWWGPPTWPATFETHE-FTVGGKAAYYMTGPDGT---------------------   71 (172)
T ss_dssp             EEEEEESSCHHHHHHHHHCHH-HHHTTSSCTTSCEEEEEEC-CSTTCEEEEEEECTTSC---------------------
T ss_pred             EEEEEeCCCHHHHHHHhCCHH-HHHhccCCCCcccceEEEe-ecCCCEEEEEEECCCCC---------------------
Confidence            567889999999999999974 7888865321123445566 3567655555432 333                     


Q ss_pred             ccceeeeeEEEEE-ecCCCceEEEEEEeCc---cc-cceeEEEEEEEEEecCCCcEEEEEEEEEecCCCCCChhh-----
Q 038195           81 SQHFVEKMKEKVE-LDPENKTVAMVVIEGD---LM-KHFKSYKVIIKVIPKSEGSLVKWIWEYEKLQEDGPTPSK-----  150 (172)
Q Consensus        81 ~~~~~~~~kEri~-~D~~~~~i~Y~vieGd---l~-~~~~s~~~t~~v~p~~dGs~v~w~~~ye~~~~~~~~p~~-----  150 (172)
                          .-...-++. +++ +++|.|+..-++   .. ........++.++|.++||+++++..+.+..    .-+.     
T Consensus        72 ----~~~~~~~v~e~~p-~~rl~~~~~~~~~~g~p~~~~~~~~v~~~l~~~~~gT~lt~~~~~~~~~----~~~~~~~~~  142 (172)
T 2ldk_A           72 ----KARGWWQFTTIEA-PDHLEFDDGFADEHGAPVDELGVTHATVKLEPLENRTRMTIISTFESEE----QMQKMAEMG  142 (172)
T ss_dssp             ----EEEEEEEEEEECS-SSEEEEEEEEBCSSCCBCTTTCEEEEEEEEEEETTEEEEEEEEEESCHH----HHHHHHHHT
T ss_pred             ----EEeeEEEEEEEcC-CCEEEEEEeecCCCCCccCCCccEEEEEEEEEcCCCEEEEEEEEcCCHH----HHHHHHHhh
Confidence                112455677 765 455777765432   11 1112466788999988789999887752110    0011     


Q ss_pred             hhHHHHHHHHHHHHHHhhc
Q 038195          151 YVDFVTDLTKNIDAHLLKE  169 (172)
Q Consensus       151 ~~~~~~~~~k~ie~ylla~  169 (172)
                      ..+....++..|.+||-+.
T Consensus       143 ~~~Gw~~~L~~L~~~le~~  161 (172)
T 2ldk_A          143 MEEGMREAIEQIDAVLSEP  161 (172)
T ss_dssp             HHHHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHHHHHHHHHh
Confidence            1345566778888888654

>2lgh_A Uncharacterized protein; AHSA1, start domain, COG3832, PF08327, HSP90, heat shock, ST genomics, PSI-biology; NMR {Aeromonas hydrophila subsp}

Probab=98.34  E-value=3.1e-05  Score=57.64  Aligned_cols=128  Identities=9%  Similarity=0.116  Sum_probs=79.6

Q ss_pred             ceEEEEcCCHHHHHHHhhcCCcccCCc-CCC-CeeeEEEEecccCCCCcEEEEEee-cCCCCCcccchhccccccccccc
Q 038195            2 ETEVEIKSPADKFYNTFSSKAHTVPNM-SPG-NLHGVEVHEGDWESHGSVKSWTFS-AGDFPATRTEEQTQSSHLRGLHY   78 (172)
Q Consensus         2 ~~e~~i~apa~kvw~~~~d~~~~lpk~-~P~-~v~sve~~eGd~g~~Gsvr~~~~~-~gg~~~~~~~~~~~~~~~~~~~~   78 (172)
                      +.++.|+||+++||+++.|.. .+++| ++. -+ .+...++| -.+|..-.+.+. .+|.                   
T Consensus         4 ~~~~~i~Ap~e~Vw~altdp~-~~~~W~~~p~~~-~~~~~~~d-~~~Gg~~~~~~~~~~G~-------------------   61 (144)
T 2lgh_A            4 SIEAHIEQEIEAVWWAWNDPD-CIARWNAASSDW-HTTGSRVD-LVVGGRFCHHMAAKDGS-------------------   61 (144)
T ss_dssp             EEEEEESSCHHHHHHHHHCHH-HHTTSSSCSTTE-EEEEEEEC-CSTTCEEEEEEEETTSS-------------------
T ss_pred             EEEEEeCCCHHHHHHHhCCHH-HHhccCCCCCCc-ccceEEEC-CCCCCEEEEEEECCCCC-------------------
Confidence            568889999999999999984 78999 653 22 23344566 345655444443 2332                   


Q ss_pred             ccccceeeeeEEEEE-ecCCCceEEEEEEeCccccceeEEEEEEEEEecCCCcEEEEEEEEEecCCCCCChhhhhHHHHH
Q 038195           79 QWSQHFVEKMKEKVE-LDPENKTVAMVVIEGDLMKHFKSYKVIIKVIPKSEGSLVKWIWEYEKLQEDGPTPSKYVDFVTD  157 (172)
Q Consensus        79 ~~~~~~~~~~kEri~-~D~~~~~i~Y~vieGdl~~~~~s~~~t~~v~p~~dGs~v~w~~~ye~~~~~~~~p~~~~~~~~~  157 (172)
                           ..-.+.-++. +++ .++|.|+. .|       ....++.++|.++||.++.+..+.  ..  ...+...+....
T Consensus        62 -----~~~~~~g~v~e~~p-~~~l~~~~-~~-------~~~~~~~l~~~~~gT~l~~~~~~~--~~--~~~~~~~~Gw~~  123 (144)
T 2lgh_A           62 -----AGFDFTGTFTRVEA-PTRLSFVM-DD-------GREVDVQFASEPGGTWVQETFDAE--TS--HTPAQQQAGWQG  123 (144)
T ss_dssp             -----CEEEEEEEEEEEET-TTEEEEEE-TT-------CCEEEEEEEEETTEEEEEEEEECC--TT--SCHHHHHHHHHH
T ss_pred             -----ceEEeEEEEEEEeC-CCEEEEEe-cC-------CcEEEEEEEEcCCCEEEEEEEECC--CH--HHHHHHHHHHHH
Confidence                 0011345566 775 45677884 23       145678899987778887776652  11  123334456667


Q ss_pred             HHHHHHHHHhhc
Q 038195          158 LTKNIDAHLLKE  169 (172)
Q Consensus       158 ~~k~ie~ylla~  169 (172)
                      ++..|++||-..
T Consensus       124 ~L~~L~~~le~~  135 (144)
T 2lgh_A          124 ILDNFKRYVEAA  135 (144)
T ss_dssp             HHHHHHHHHHHS
T ss_pred             HHHHHHHHHhhC
Confidence            788888887653

>3pu2_A Uncharacterized protein; SRPBCC superfamily, PSI-biology, NESG, RHR263, structural GE protein structure initiative; HET: MSE; 2.61A {Rhodobacter sphaeroides}

Probab=98.31  E-value=5.2e-06  Score=63.44  Aligned_cols=134  Identities=10%  Similarity=0.134  Sum_probs=83.2

Q ss_pred             CceEEEEcCCHHHHHHHhhcCCcccCCcCCCCeeeEEEEecccCCCCcEEEEEee-cCCCCCcccchhcccccccccccc
Q 038195            1 METEVEIKSPADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFS-AGDFPATRTEEQTQSSHLRGLHYQ   79 (172)
Q Consensus         1 ~~~e~~i~apa~kvw~~~~d~~~~lpk~~P~~v~sve~~eGd~g~~Gsvr~~~~~-~gg~~~~~~~~~~~~~~~~~~~~~   79 (172)
                      ++.++.|+||+++||+++.|.. .+++|.+..--.+...++| -.+|..-.+.+. .+|.                    
T Consensus        15 i~~~~~i~Ap~e~Vw~altdp~-~~~~W~~~~~~~~~~~~~d-~~~Gg~~~~~~~~~~G~--------------------   72 (164)
T 3pu2_A           15 LEFRRHFAATPEQLWAALTSPA-LLPAWLFARGWPMTECVFE-PHKGGLIRQVWTGPEGR--------------------   72 (164)
T ss_dssp             EEEEEEESSCHHHHHHHHHCTT-TGGGTSCBTTBCEEEEEEC-CSTTCEEEEEEECGGGC--------------------
T ss_pred             EEEEEEECCCHHHHHHHhcCHH-HHhhEeCCCCeeeEEEEEe-ccCCCEEEEEEECCCCC--------------------
Confidence            3568899999999999999985 7899987422233445666 356665544442 2332                    


Q ss_pred             cccceeeeeEEEEE-ecCCCceEEEEEE-eC-ccccceeEEEEEEEEEecCCCcEEEEEEEEEecCCCCCChh-----hh
Q 038195           80 WSQHFVEKMKEKVE-LDPENKTVAMVVI-EG-DLMKHFKSYKVIIKVIPKSEGSLVKWIWEYEKLQEDGPTPS-----KY  151 (172)
Q Consensus        80 ~~~~~~~~~kEri~-~D~~~~~i~Y~vi-eG-dl~~~~~s~~~t~~v~p~~dGs~v~w~~~ye~~~~~~~~p~-----~~  151 (172)
                           .-.+.-++. +++. ++|.|+.. .+ +..   .....++.++|.++||.++++-.|..  .  ...+     ..
T Consensus        73 -----~~~~~g~v~e~~p~-~rl~~t~~~~~~~~~---~~s~vt~~l~~~~~gT~l~l~~~~~~--~--~~~~~~~~~~~  139 (164)
T 3pu2_A           73 -----TRGLTGRVILAEPP-HRLIHSELYDEDWTG---GETLVTLQLLPVEGGTELAMAVDYAT--P--EARDAVAASAM  139 (164)
T ss_dssp             -----EEEEEEEEEEEETT-TEEEEEEBCC---CC---SCEEEEEEEEEETTEEEEEEEEECSS--T--THHHHHHTSTH
T ss_pred             -----EEEEEEEEEEEcCC-CEEEEEEeccCCCCC---CCEEEEEEEEEcCCCEEEEEEEEeCC--H--HHHHHHHHhhH
Confidence                 112445666 7664 45666653 11 121   12567889999988899998887421  1  1111     12


Q ss_pred             hHHHHHHHHHHHHHHhhc
Q 038195          152 VDFVTDLTKNIDAHLLKE  169 (172)
Q Consensus       152 ~~~~~~~~k~ie~ylla~  169 (172)
                      .+.-..++..|++||.+-
T Consensus       140 ~~GW~~~L~~L~~~l~~~  157 (164)
T 3pu2_A          140 ATEMEEAYRHLDVMLAAL  157 (164)
T ss_dssp             HHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHh
Confidence            356677888999998763

>1xfs_A NC_840354, conserved hypothetical protein; structural genomics, protein structure initiative, NESG, ALP protein, PSI; 1.70A {Nitrosomonas europaea} SCOP: d.129.3.5

Probab=98.30  E-value=2.3e-05  Score=60.08  Aligned_cols=136  Identities=9%  Similarity=-0.050  Sum_probs=81.7

Q ss_pred             ceEEEEcCCHHHHHHHhhcCCcccCCcCCCCeeeEEEEecccCCCCcEEEEEeec-CCCCCcccchhccccccccccccc
Q 038195            2 ETEVEIKSPADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSA-GDFPATRTEEQTQSSHLRGLHYQW   80 (172)
Q Consensus         2 ~~e~~i~apa~kvw~~~~d~~~~lpk~~P~~v~sve~~eGd~g~~Gsvr~~~~~~-gg~~~~~~~~~~~~~~~~~~~~~~   80 (172)
                      +.++.|+||+++||+++.|.. .+++|++..=-.+...++| -.+|..-.+.+.. +|.                     
T Consensus        13 ~~~r~i~Ap~e~Vw~altdp~-~~~~W~~p~~~~~~~~~~d-~~~Gg~~~~~~~~~~G~---------------------   69 (178)
T 1xfs_A           13 MLKRELAVPVNLVWRGLTEPE-LLKKWFVPKPWSISDCRVD-LRPGGEFYTVMQDPEGN---------------------   69 (178)
T ss_dssp             EEEEEESSCHHHHHHHHHCHH-HHTTTSSCTTCEEEEEEEC-CSTTCEEEEEEECTTCC---------------------
T ss_pred             EEEEEecCCHHHHHHHhCCHH-HHhhCCCCCCeeeeEEEEe-eECCcEEEEEEECCCCC---------------------
Confidence            567889999999999999984 7899975421123445666 3677766666543 332                     


Q ss_pred             ccceeeeeEEEEE-ecCCCceEEEEEEeCc--cccc-e-----e----EEEEEEEEEecCCCcEEEEEEEEEecCCCCCC
Q 038195           81 SQHFVEKMKEKVE-LDPENKTVAMVVIEGD--LMKH-F-----K----SYKVIIKVIPKSEGSLVKWIWEYEKLQEDGPT  147 (172)
Q Consensus        81 ~~~~~~~~kEri~-~D~~~~~i~Y~vieGd--l~~~-~-----~----s~~~t~~v~p~~dGs~v~w~~~ye~~~~~~~~  147 (172)
                          .-...-++. +++. +++.|+..-++  .... +     .    ....++.++|.++||+++++..|...    ..
T Consensus        70 ----~~~~~~~v~e~~p~-~rl~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~l~~~~~gT~l~~~~~~~~~----~~  140 (178)
T 1xfs_A           70 ----KFPNSGCFLEVTDE-KRLIWTSALVKNYRPAVPATTSDKECAHIVMTAVIELQPTSSGTRYTACAMHNTP----GQ  140 (178)
T ss_dssp             ----EEEEEEEEEEEETT-TEEEEESSEEGGGEECCC-----------CCEEEEEEEECSSSEEEEEEEECSSH----HH
T ss_pred             ----EEEEEEEEEEEeCC-CEEEEEEEEcCCCCccccccccccccccccEEEEEEEEECCCCEEEEEEEEcCCH----HH
Confidence                112455666 7764 45666653211  1100 0     0    35678899998888999888875210    00


Q ss_pred             hhhh-----hHHHHHHHHHHHHHHhhc
Q 038195          148 PSKY-----VDFVTDLTKNIDAHLLKE  169 (172)
Q Consensus       148 p~~~-----~~~~~~~~k~ie~ylla~  169 (172)
                      .+..     .+....++..|.+||-+.
T Consensus       141 ~~~~~~~~~~~Gw~~~l~~L~~~le~~  167 (178)
T 1xfs_A          141 RKLHEEMGFHEGWGTTITQLEELLKQE  167 (178)
T ss_dssp             HHHHHTTTHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHHhh
Confidence            1111     234566677888877543

>3q64_A MLL3774 protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.50A {Mesorhizobium loti}

Probab=98.28  E-value=1.6e-05  Score=60.44  Aligned_cols=135  Identities=15%  Similarity=0.071  Sum_probs=81.6

Q ss_pred             ceEEEEcCCHHHHHHHhhcCCcccCCcCCCC--eeeEEEEecccCCCCcEEEEEeec-CCCCCcccchhccccccccccc
Q 038195            2 ETEVEIKSPADKFYNTFSSKAHTVPNMSPGN--LHGVEVHEGDWESHGSVKSWTFSA-GDFPATRTEEQTQSSHLRGLHY   78 (172)
Q Consensus         2 ~~e~~i~apa~kvw~~~~d~~~~lpk~~P~~--v~sve~~eGd~g~~Gsvr~~~~~~-gg~~~~~~~~~~~~~~~~~~~~   78 (172)
                      +.+..|+||+++||+++.|.. .+++|.+..  +. +...++| -.+|..-.+.+.. +|.                   
T Consensus        12 ~~~r~i~Ap~e~Vw~altdp~-~~~~W~~~~~g~~-~~~~~~d-~~~Gg~~~~~~~~~~G~-------------------   69 (162)
T 3q64_A           12 IIERLYPAPPSKVFFALGNAD-AKRRWFTDPDNPM-PGRFEMD-FRVGGKEVNAGGPKDGP-------------------   69 (162)
T ss_dssp             EEEEEESSCHHHHHHHHHCHH-HHHHHSSCTTSCC-GGGCEEC-CSTTCEEEEEECCTTSC-------------------
T ss_pred             EEEEEeCCCHHHHHHHHCCHH-HHhhcCCCCCCcc-ceEEEEC-CccCCEEEEEEECCCCC-------------------
Confidence            467889999999999999974 788998542  11 1112345 2456555554432 232                   


Q ss_pred             ccccceeeeeEEEEE-ecCCCceEEEEEEe--CccccceeEEEEEEEEEecCCCcEEEEEEEEEecCCCCCChhhhhHHH
Q 038195           79 QWSQHFVEKMKEKVE-LDPENKTVAMVVIE--GDLMKHFKSYKVIIKVIPKSEGSLVKWIWEYEKLQEDGPTPSKYVDFV  155 (172)
Q Consensus        79 ~~~~~~~~~~kEri~-~D~~~~~i~Y~vie--Gdl~~~~~s~~~t~~v~p~~dGs~v~w~~~ye~~~~~~~~p~~~~~~~  155 (172)
                            .-.+.-++. +++. +++.|+..-  .+.  .......++.++|.++||+++++-..-+... ....+...+.-
T Consensus        70 ------~~~~~g~v~e~~p~-~rl~~~~~~~~~~~--~~~~s~v~~~l~~~~~gT~lt~~~~~~~~~~-~~~~~~~~~GW  139 (162)
T 3q64_A           70 ------IHVYTATYQDIVPD-QRIVYSYDMLFGET--RISVSLATIQLFAEGEGTRLVLTEQGAFLDG-HDTPSTREHGT  139 (162)
T ss_dssp             ------CEEEEEEEEEEETT-TEEEEEEEEEETTE--EEEEEEEEEEEEEETTEEEEEEEEEEEEETT-SSCHHHHHHHH
T ss_pred             ------EEEEEEEEEEEcCC-CEEEEEEEecCCCC--CCCceEEEEEEEEcCCCEEEEEEEEecCccc-hhHHHHHHHHH
Confidence                  112445666 7654 445565542  221  1234557889999988899999888643321 12234445566


Q ss_pred             HHHHHHHHHHHhh
Q 038195          156 TDLTKNIDAHLLK  168 (172)
Q Consensus       156 ~~~~k~ie~ylla  168 (172)
                      ..++..|++||..
T Consensus       140 ~~~L~~L~~~le~  152 (162)
T 3q64_A          140 GVLLDLLDAFLDK  152 (162)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhh
Confidence            7777888887754

>3q6a_A Uncharacterized protein; structural genomics, PSI-biology; 1.80A {Staphylococcus saprophyticus subsp}

Probab=98.25  E-value=1.1e-05  Score=59.03  Aligned_cols=123  Identities=10%  Similarity=0.110  Sum_probs=77.4

Q ss_pred             CceEEEEcCCHHHHHHHhhcCCcccCCcCCCCeeeEEEEecccCCCCcEEEEEeecCCCCCcccchhccccccccccccc
Q 038195            1 METEVEIKSPADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSAGDFPATRTEEQTQSSHLRGLHYQW   80 (172)
Q Consensus         1 ~~~e~~i~apa~kvw~~~~d~~~~lpk~~P~~v~sve~~eGd~g~~Gsvr~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~   80 (172)
                      ++.++.|+||+++||+++.|.. .+++|.+.   .   .+++ -.+|..-.+.+....                      
T Consensus         3 i~~~~~i~ap~e~Vw~altd~~-~~~~W~~~---~---~~~~-~~~Gg~~~~~~~~~~----------------------   52 (135)
T 3q6a_A            3 IITKMQVDVPRETVFEAFVDPE-KIGGFWFS---S---SSER-WEQGKTITLRYEEYD----------------------   52 (135)
T ss_dssp             EEEEEEESSCHHHHHHHHHCTT-TGGGTSSS---E---ESSC-CCTTCEEEEECGGGT----------------------
T ss_pred             EEEEEEeCCCHHHHHHHHcCHH-HhcccCCC---C---Cccc-ccCCCEEEEEEcCcC----------------------
Confidence            3578899999999999999985 78999774   1   2466 367766666543211                      


Q ss_pred             ccceeeeeEEEEE-ecCCCceEEEEEEeCccccceeEEEEEEEEEecCCCcEEEEEEEEEecCCCCCChhhhhHHHHHHH
Q 038195           81 SQHFVEKMKEKVE-LDPENKTVAMVVIEGDLMKHFKSYKVIIKVIPKSEGSLVKWIWEYEKLQEDGPTPSKYVDFVTDLT  159 (172)
Q Consensus        81 ~~~~~~~~kEri~-~D~~~~~i~Y~vieGdl~~~~~s~~~t~~v~p~~dGs~v~w~~~ye~~~~~~~~p~~~~~~~~~~~  159 (172)
                          . ...-++. +++. +.+.|+...|         ..++.++|.++||.++++-...+..+. ..-....+....++
T Consensus        53 ----~-~~~~~v~~~~p~-~~l~~~~~~g---------~~~~~l~~~~~gT~l~~~~~~~~~~~~-~~~~~~~~GW~~~l  116 (135)
T 3q6a_A           53 ----A-ELNINIERVEDN-QLIAFTWGAH---------PITIQFEESEAGTVVTTTEKDFDTQDV-KQLLGQKEGWVYML  116 (135)
T ss_dssp             ----C--CEEEEEEEETT-TEEEEEETTE---------EEEEEEEEETTEEEEEEEECCCCSSCH-HHHHHHHHHHHHHH
T ss_pred             ----c-eEEEEEEEEcCC-CEEEEEEcCC---------eEEEEEEECCCCEEEEEEEcCCCcchH-HHHhhchhCHHHHH
Confidence                0 1233555 7665 5577776421         678899998777988877543221110 00012344566778


Q ss_pred             HHHHHHHhhc
Q 038195          160 KNIDAHLLKE  169 (172)
Q Consensus       160 k~ie~ylla~  169 (172)
                      ..|.+||-..
T Consensus       117 ~~L~~~le~g  126 (135)
T 3q6a_A          117 SCLKVYLEHG  126 (135)
T ss_dssp             HHHHHHHHHS
T ss_pred             HHHHHHHhcC
Confidence            8888888654

>2lak_A AHSA1-like protein RHE_CH02687; NESG, structural genomics, northeast structural genomics CON PSI-biology, structure genomics, unknown function; NMR {Rhizobium etli}

Probab=98.23  E-value=1.3e-06  Score=66.05  Aligned_cols=128  Identities=9%  Similarity=0.001  Sum_probs=77.2

Q ss_pred             ceEEEEcCCHHHHHHHhhcCCcccCCcCCCCeeeEEEEecccCCCCcEEEEEeecCCCCCcccchhcccccccccccccc
Q 038195            2 ETEVEIKSPADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSAGDFPATRTEEQTQSSHLRGLHYQWS   81 (172)
Q Consensus         2 ~~e~~i~apa~kvw~~~~d~~~~lpk~~P~~v~sve~~eGd~g~~Gsvr~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~   81 (172)
                      +.++.|+||+++||+++.|.. .+++|+|. +.+     ++ -.+|....+++.  |.                      
T Consensus        12 ~~~~~i~Ap~e~Vw~altdp~-~~~~W~~~-~~~-----~~-~~~Gg~~~~~~~--g~----------------------   59 (160)
T 2lak_A           12 RREAHLAAPPAAVFALMTDPE-KILRWMGT-EAE-----VE-PEPGGLYLVNVT--GA----------------------   59 (160)
T ss_dssp             EEEEEESSCHHHHHHHHHCHH-HHHHTSCS-SEE-----ES-CSTTCCEEECSS--TT----------------------
T ss_pred             EEEEEeCCCHHHHHHHhcChH-HHhhhCCC-cce-----ee-ccCCCEEEEEEe--CC----------------------
Confidence            578899999999999999974 78999986 322     33 234443344443  22                      


Q ss_pred             cceeeeeEEEEE-ecCCCceEEEEEEeCcc-ccceeEEEEEEEEEecCCCcEEEEEEEEEecCCCCCChhhhhHHHHHHH
Q 038195           82 QHFVEKMKEKVE-LDPENKTVAMVVIEGDL-MKHFKSYKVIIKVIPKSEGSLVKWIWEYEKLQEDGPTPSKYVDFVTDLT  159 (172)
Q Consensus        82 ~~~~~~~kEri~-~D~~~~~i~Y~vieGdl-~~~~~s~~~t~~v~p~~dGs~v~w~~~ye~~~~~~~~p~~~~~~~~~~~  159 (172)
                         . .+..++. +++ ++.+.|+...++. +..-.....++.|+|.++||.++|+..-.+..   ...+...+....++
T Consensus        60 ---~-~~~~~v~e~~p-~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~gT~l~~~~~~~~~~---~~~~~~~~gw~~~L  131 (160)
T 2lak_A           60 ---R-FARGSFREVVP-VHRLAYSFGWDGSEVVPPGSSLVEIDLIEQGGGTLLRLTHSGLPSA---EQCAGHEEGWAHYL  131 (160)
T ss_dssp             ---C-CSSCCEEEEET-TTEEEECCCCCSSSCCCTTSCEEEEEEEECSSSEEEEEEEECCCSH---HHHHHHHHHHHHHH
T ss_pred             ---c-eEEEEEEEEcC-CCEEEEEEEecCCCCCCCCcEEEEEEEEECCCCEEEEEEEeCCCCH---HHHHHHHHHHHHHH
Confidence               0 1234555 765 4567776543321 00112456788999988889998887621110   01122334556777


Q ss_pred             HHHHHHHhhc
Q 038195          160 KNIDAHLLKE  169 (172)
Q Consensus       160 k~ie~ylla~  169 (172)
                      ..|.+||-+.
T Consensus       132 ~~Lk~~le~~  141 (160)
T 2lak_A          132 GRLTEVAAGR  141 (160)
T ss_dssp             HHHHHHHHCS
T ss_pred             HHHHHHHhcC
Confidence            8888888653

>1xn5_A BH1534 unknown conserved protein; structural genomics, protein structure initiative, PSI, BACI halodurans protein BH1534, alpha + beta; NMR {Bacillus halodurans} SCOP: d.129.3.5

Probab=98.22  E-value=3.1e-06  Score=63.11  Aligned_cols=90  Identities=10%  Similarity=0.117  Sum_probs=62.8

Q ss_pred             ceEEEEcCCHHHHHHHhhcCCcccCCcCCCCeeeEEEEecccCCCCcEEEEEeecCCCCCcccchhcccccccccccccc
Q 038195            2 ETEVEIKSPADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSAGDFPATRTEEQTQSSHLRGLHYQWS   81 (172)
Q Consensus         2 ~~e~~i~apa~kvw~~~~d~~~~lpk~~P~~v~sve~~eGd~g~~Gsvr~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~   81 (172)
                      +.++.|+||+++||+++.|.. .+++|+|. .      +++ -.+|..-.+.+ ++|.                      
T Consensus         8 ~~~~~i~Ap~e~Vw~altd~~-~~~~W~~~-~------~~~-~~~Gg~~~~~~-~~g~----------------------   55 (146)
T 1xn5_A            8 KKEVRFNAPIEKVWEAVSTSE-GLAFWFME-N------DLK-AETGHHFHLQS-PFGP----------------------   55 (146)
T ss_dssp             EEEEEESSCHHHHHHHTTSHH-HHHTTSCC-B------CCC-SCTTCEEEEEC-SSCE----------------------
T ss_pred             EEEEEEcCCHHHHHHHHhChh-HHHHhcCC-C------CCC-ccCCCEEEEEe-cCCc----------------------
Confidence            578899999999999999984 78999986 2      344 35676655554 2222                      


Q ss_pred             cceeeeeEEEEE-ecCCCceEEEEEEeCccccceeEEEEEEEEEecCCCcEEEEEEE
Q 038195           82 QHFVEKMKEKVE-LDPENKTVAMVVIEGDLMKHFKSYKVIIKVIPKSEGSLVKWIWE  137 (172)
Q Consensus        82 ~~~~~~~kEri~-~D~~~~~i~Y~vieGdl~~~~~s~~~t~~v~p~~dGs~v~w~~~  137 (172)
                            +.-++. +++. +.+.|+...       .....+++++|.++||.++++..
T Consensus        56 ------~~~~v~e~~p~-~~l~~~~~~-------~~~~~~~~l~~~~~gT~l~~~~~   98 (146)
T 1xn5_A           56 ------SPCQVTDVERP-IKLSFTWDT-------DGWSVTFHLKEEENGTIFTIVHS   98 (146)
T ss_dssp             ------EEEEEEEEETT-TEEEEEETT-------TTEEEEEEEEECSSSEEEEEEEE
T ss_pred             ------eEEEEEEEeCC-cEEEEEEeC-------CCEEEEEEEEEcCCCEEEEEEEE
Confidence                  456677 7764 567777542       11346788999888898887765

>2lf2_A Uncharacterized protein; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics consortium; NMR {Cytophaga hutchinsonii}

Probab=98.08  E-value=0.00015  Score=55.61  Aligned_cols=132  Identities=11%  Similarity=0.089  Sum_probs=79.8

Q ss_pred             ceEEEEcCCHHHHHHHhhcCCcccCCcCCCCeeeEEEEecccCCCCcEEEEEee-cCCCCCcccchhccccccccccccc
Q 038195            2 ETEVEIKSPADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFS-AGDFPATRTEEQTQSSHLRGLHYQW   80 (172)
Q Consensus         2 ~~e~~i~apa~kvw~~~~d~~~~lpk~~P~~v~sve~~eGd~g~~Gsvr~~~~~-~gg~~~~~~~~~~~~~~~~~~~~~~   80 (172)
                      +.++.|+||+++||+++.|.. .+++|++..=-.+...++|. .+|..-.+.+. .+|.                     
T Consensus        19 ~~~~~i~Ap~e~Vw~a~tdpe-~~~~W~~p~~~~~~~~~~d~-~~Gg~~~~~~~~~~G~---------------------   75 (175)
T 2lf2_A           19 TIKREFAAVRAIVWEAFTRAE-ILDQWWAPKPWKAKTKSMDF-KEGGTWLYAMVGPNGE---------------------   75 (175)
T ss_dssp             EEEEEESSCHHHHHHHHTCHH-HHHHSSSSSSSEEEEEEECC-STTCEEEEEEECSSSC---------------------
T ss_pred             EEEEEEcCCHHHHHHHhCCHH-HHhhCcCCCCccceEEEEec-cCCCEEEEEEECCCCC---------------------
Confidence            567889999999999999974 78899753211234456663 56665554443 2333                     


Q ss_pred             ccceeeeeEEEEE-ecCCCceEEEEEEeCc---ccc-ceeEEEEEEEEEecCCCcEEEEEEEEEecCCCCCChhh---h-
Q 038195           81 SQHFVEKMKEKVE-LDPENKTVAMVVIEGD---LMK-HFKSYKVIIKVIPKSEGSLVKWIWEYEKLQEDGPTPSK---Y-  151 (172)
Q Consensus        81 ~~~~~~~~kEri~-~D~~~~~i~Y~vieGd---l~~-~~~s~~~t~~v~p~~dGs~v~w~~~ye~~~~~~~~p~~---~-  151 (172)
                          .-...-++. +++. ++|.|+..-++   ... .......++.|+|.++||.++.+..|.       +++.   + 
T Consensus        76 ----~~~~~g~v~e~~p~-~rl~~t~~~~~~~g~p~~~~~~~~v~~~l~~~~~gT~l~~~~~~~-------~~~~~~~~~  143 (175)
T 2lf2_A           76 ----EHWSICEYAIIKPI-ERFTGKDGFTDASGKLNTEMPRSNWDMRFIDKGEITEVQYHISYD-------DVAQLEATI  143 (175)
T ss_dssp             ----EEEEEEEECCCCSS-SEEEEEEEEESSTTCCCTTSCCEEEEEEEEEETTEEEEEEEEECS-------CHHHHHHHH
T ss_pred             ----EEEeEEEEEEEcCC-CEEEEEEEecCCCCCcCCCCCcEEEEEEEEECCCCEEEEEEEecC-------CHHHHHHHH
Confidence                112455677 7654 45666654221   111 112356788999988779888776641       1221   1 


Q ss_pred             ----hHHHHHHHHHHHHHHhh
Q 038195          152 ----VDFVTDLTKNIDAHLLK  168 (172)
Q Consensus       152 ----~~~~~~~~k~ie~ylla  168 (172)
                          .+.....+..|++||-.
T Consensus       144 ~~~~~~Gw~~~L~~L~~~le~  164 (175)
T 2lf2_A          144 QMGFKEGITMAMENLDELLVS  164 (175)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHHHHHh
Confidence                23456677888888765

>3uid_A Putative uncharacterized protein; SRPBCC superfamily, beta sandwich, function, structural genomics, TB structural genomics conso TBSGC; 1.57A {Mycobacterium smegmatis} SCOP: d.129.3.0

Probab=98.07  E-value=3.7e-05  Score=59.09  Aligned_cols=136  Identities=10%  Similarity=0.114  Sum_probs=80.3

Q ss_pred             ceEEEEcCCHHHHHHHhhcCCcccCCcCCCCeeeEEEEecccCCCCcEEEEEee-cCCCCCcccchhccccccccccccc
Q 038195            2 ETEVEIKSPADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFS-AGDFPATRTEEQTQSSHLRGLHYQW   80 (172)
Q Consensus         2 ~~e~~i~apa~kvw~~~~d~~~~lpk~~P~~v~sve~~eGd~g~~Gsvr~~~~~-~gg~~~~~~~~~~~~~~~~~~~~~~   80 (172)
                      +.+..|+||+++||+++.+.. .+.+|++..=-.+...++|. .+|.--.+.+. .+|.                     
T Consensus        16 ~~~r~i~Ap~e~Vw~a~Tdpe-~l~~W~~p~~~~~~~~~~d~-r~GG~~~~~~~~~~G~---------------------   72 (168)
T 3uid_A           16 TITAEFAAPVTRIWQIYADPR-QLEKVWGPPSHPATVVDHDL-RPGGRVTYFMTGPDGE---------------------   72 (168)
T ss_dssp             EEEEEESSCHHHHHHHHHSHH-HHHHHHCCTTSCCEEEEECC-STTCEEEEEEECTTSC---------------------
T ss_pred             EEEEEEcCCHHHHHHHhCCHH-HHhhEeCCCCeeeeEEEEcc-cCCcEEEEEEECCCCC---------------------
Confidence            467889999999999999874 77888543211234456663 45544444432 2333                     


Q ss_pred             ccceeeeeEEEEE-ecCCCceEEEEEEe----CccccceeEEEEEEEEEecCCCcEEEEEEEEEecCCCCCChhh-----
Q 038195           81 SQHFVEKMKEKVE-LDPENKTVAMVVIE----GDLMKHFKSYKVIIKVIPKSEGSLVKWIWEYEKLQEDGPTPSK-----  150 (172)
Q Consensus        81 ~~~~~~~~kEri~-~D~~~~~i~Y~vie----Gdl~~~~~s~~~t~~v~p~~dGs~v~w~~~ye~~~~~~~~p~~-----  150 (172)
                          .-...-++. +++. ++|.|+-.-    |...........+++++|.++||+++++..|...    ...+.     
T Consensus        73 ----~~~~~g~~~ev~p~-~rlv~t~~~~~~~g~p~~~~~~s~vt~~l~~~~~gT~lt~~~~~~~~----~~~~~~~~~g  143 (168)
T 3uid_A           73 ----KYAGYWEITAVDEP-HSFSFLDGFADEDFNPNTDLPVSTNVYTFTEHDGGTRATYVGTYASA----EALQQVLDMG  143 (168)
T ss_dssp             ----EEEEEEEEEEEETT-TEEEEEEEEECTTSCBCSSCCCEEEEEEEEEETTEEEEEEEEECSCH----HHHHHHHHTT
T ss_pred             ----EEeeEEEEEEEeCC-cEEEEEEeeccCCCCcCCCCCcEEEEEEEEECCCCEEEEEEEecCCH----HHHHHHHHhc
Confidence                112455666 7664 445565532    2221111235678899999877998888543211    01111     


Q ss_pred             hhHHHHHHHHHHHHHHhhc
Q 038195          151 YVDFVTDLTKNIDAHLLKE  169 (172)
Q Consensus       151 ~~~~~~~~~k~ie~ylla~  169 (172)
                      ..+.....+..|++||.+.
T Consensus       144 ~~~GW~~~L~~L~~~l~~~  162 (168)
T 3uid_A          144 VIEGASSAINQIDALLTAT  162 (168)
T ss_dssp             HHHHHHHHHHHHHHHTCSC
T ss_pred             HHHHHHHHHHHHHHHHHhh
Confidence            2346677889999999874

>2l9p_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Staphylococcus epidermidis}

Probab=98.04  E-value=2.3e-05  Score=59.44  Aligned_cols=134  Identities=7%  Similarity=0.045  Sum_probs=80.7

Q ss_pred             ceEEEEcCCHHHHHHHhhcCCcccCCcCCCCeeeEEEEecccCCCCcEEEEEee-cCCCCCcccchhccccccccccccc
Q 038195            2 ETEVEIKSPADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFS-AGDFPATRTEEQTQSSHLRGLHYQW   80 (172)
Q Consensus         2 ~~e~~i~apa~kvw~~~~d~~~~lpk~~P~~v~sve~~eGd~g~~Gsvr~~~~~-~gg~~~~~~~~~~~~~~~~~~~~~~   80 (172)
                      +.++.|+||+++||+++.|.. .+++|++..=-.+...++|. .+|..-.+.+. .+|.                     
T Consensus        11 ~~~~~i~Ap~e~Vw~a~tdpe-~~~~W~~p~~~~~~~~~~d~-~~Gg~~~~~~~~~~G~---------------------   67 (164)
T 2l9p_A           11 IFTRTFSAPINKVFDAYTKRE-LFEQWFHPQDASVTVYDFNA-TKGGSAFYAIQAPQMI---------------------   67 (164)
T ss_dssp             EECCEESSCHHHHHHHHHCHH-HHTTTCCCTTCEEEEEECCC-STTEEEEEEEEETTEE---------------------
T ss_pred             EEEEEeCCCHHHHHHHhCCHH-HHHhccCCCCceeeEEEEec-cCCCEEEEEEECCCCC---------------------
Confidence            456789999999999999974 78899753211344556773 56665444443 2232                     


Q ss_pred             ccceeeeeEEEEE-ecCCCceEEEEEEeCc---ccc-ceeEEEEEEEEEecCCCcEEEEEEEEEecCCCCCChhh-----
Q 038195           81 SQHFVEKMKEKVE-LDPENKTVAMVVIEGD---LMK-HFKSYKVIIKVIPKSEGSLVKWIWEYEKLQEDGPTPSK-----  150 (172)
Q Consensus        81 ~~~~~~~~kEri~-~D~~~~~i~Y~vieGd---l~~-~~~s~~~t~~v~p~~dGs~v~w~~~ye~~~~~~~~p~~-----  150 (172)
                          .- ..-++. +++. ++|.|+...++   ... .......+++|+|.++||.++.+..|..  .  ...+.     
T Consensus        68 ----~~-~~g~v~e~~p~-~rl~~t~~~~~~~g~p~~~~~~~~v~~~l~~~~~gT~l~~~~~~~~--~--~~~~~~~~~~  137 (164)
T 2l9p_A           68 ----SY-TIAEYLQVDAP-YYIEYLDYFATSKGEKDTSMPGMHITLNFEEVKGKTTVTSTSTFPT--E--SAAQQAIDMG  137 (164)
T ss_dssp             ----EE-EEEEESCCBTT-TEEEEEEEEEBTTBSCCSSSCCEEEEEEECCCSSSEEEEEEEECSS--T--THHHHHHHHT
T ss_pred             ----EE-EEEEEEEEcCC-CEEEEEEEecCCCCCccCCCCceEEEEEEEECCCCEEEEEEEEcCC--H--HHHHHHHHhh
Confidence                11 456677 7664 45667654322   111 1123567889999877898888765421  1  11111     


Q ss_pred             hhHHHHHHHHHHHHHHhh
Q 038195          151 YVDFVTDLTKNIDAHLLK  168 (172)
Q Consensus       151 ~~~~~~~~~k~ie~ylla  168 (172)
                      ..+....++..|++||.+
T Consensus       138 ~~~Gw~~~L~~L~~~le~  155 (164)
T 2l9p_A          138 VETGMNSTLNQLEKLLNQ  155 (164)
T ss_dssp             HHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            234556677888888765

>2qpv_A Uncharacterized protein ATU1531; structural genomics, PSI protein structure initiative, midwest center for structural genomics; 2.35A {Agrobacterium tumefaciens str} SCOP: d.129.3.8

Probab=98.04  E-value=3.4e-05  Score=59.51  Aligned_cols=33  Identities=18%  Similarity=0.399  Sum_probs=29.5

Q ss_pred             ceEEEEcCCHHHHHHHhhcCCcccCCcCCCCeeeE
Q 038195            2 ETEVEIKSPADKFYNTFSSKAHTVPNMSPGNLHGV   36 (172)
Q Consensus         2 ~~e~~i~apa~kvw~~~~d~~~~lpk~~P~~v~sv   36 (172)
                      +.+++|++|++.||+.+.|.. .+|.|+|+ ++++
T Consensus        30 ~~si~I~ap~eeVy~~~~D~e-~lP~W~~~-l~~~   62 (156)
T 2qpv_A           30 IIHLSVEKPWAEVYDFAANPG-NMPRWAAG-LAGG   62 (156)
T ss_dssp             EEEEEESSCHHHHHHHHHCGG-GGGGTCGG-GTTC
T ss_pred             EEEEEEcCCHHHHHHHHHChh-hHHHHHHh-hhhh
Confidence            568999999999999999985 89999997 7775

>3eli_A AHSA1, AHA1 domain protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.80A {Silicibacter pomeroyi} SCOP: d.129.3.5

Probab=97.97  E-value=4.9e-05  Score=56.77  Aligned_cols=136  Identities=15%  Similarity=0.054  Sum_probs=76.7

Q ss_pred             CceEEEEcCCHHHHHHHhhcCCcccCCcCCCCeeeEE--EEecccCCCCcEEEEEeec-CCCCCcccchhcccccccccc
Q 038195            1 METEVEIKSPADKFYNTFSSKAHTVPNMSPGNLHGVE--VHEGDWESHGSVKSWTFSA-GDFPATRTEEQTQSSHLRGLH   77 (172)
Q Consensus         1 ~~~e~~i~apa~kvw~~~~d~~~~lpk~~P~~v~sve--~~eGd~g~~Gsvr~~~~~~-gg~~~~~~~~~~~~~~~~~~~   77 (172)
                      ++.++.|+||+++||+++.|.. .+.+|.+..--.+.  ..++| -.+|..-.+.+.. +|.                  
T Consensus         4 i~~~r~i~Ap~e~Vw~altdp~-~~~~W~~~~~~~~~~~~~~~d-~~~Gg~~~~~~~~~~G~------------------   63 (152)
T 3eli_A            4 LRLEREFAVAPEALFAWVSDGA-KLLQWWGPEGLHVPADQHDLD-FTRLGPWFSVMVNGEGQ------------------   63 (152)
T ss_dssp             EEEEEEESSCHHHHHHHTTCHH-HHHHHCSSTTCBCCTTSBCCC-CSSSEEEEEEEECTTCC------------------
T ss_pred             EEEEEEECCCHHHHHHHHcCHH-HHhhccCCCCcccccceeEEc-ccCCcEEEEEEECCCCC------------------
Confidence            3568899999999999999974 78888763211121  23445 2566555555432 332                  


Q ss_pred             cccccceeeeeEEEEE-ecCCCceEEEEEEeCcccc-ceeEEEEEEEEEecCCCcEEEEEEEEEecCCCCCChhhhhHHH
Q 038195           78 YQWSQHFVEKMKEKVE-LDPENKTVAMVVIEGDLMK-HFKSYKVIIKVIPKSEGSLVKWIWEYEKLQEDGPTPSKYVDFV  155 (172)
Q Consensus        78 ~~~~~~~~~~~kEri~-~D~~~~~i~Y~vieGdl~~-~~~s~~~t~~v~p~~dGs~v~w~~~ye~~~~~~~~p~~~~~~~  155 (172)
                             .-...-++. +++. +.+.|+....+... .-.....++.++|.++||.++++-.  ...+. ...+...+.-
T Consensus        64 -------~~~~~g~v~e~~p~-~~l~~~~~~~~~~~~~~~~~~v~~~l~~~~~gT~l~l~~~--~~~~~-~~~~~~~~GW  132 (152)
T 3eli_A           64 -------RYKVSGQVTHVKPP-QSVGFTWGWHDDDDRRGAESHVMFIVEPCAKGARLILDHR--ELGDD-EMSLRHEEGW  132 (152)
T ss_dssp             -------EEEEEEEEEEEETT-TEEEEEEEEECTTSCEEEEEEEEEECCBC--CEEEEEEEE--SCSCH-HHHHHHHHHH
T ss_pred             -------EEEEEEEEEEEcCC-CEEEEEEeecCCCCCCCCcEEEEEEEEECCCCEEEEEEEc--cCCCH-HHHHHHHHHH
Confidence                   112455666 7664 45666654322211 1234567889999888887776533  11110 0112233466


Q ss_pred             HHHHHHHHHHHh
Q 038195          156 TDLTKNIDAHLL  167 (172)
Q Consensus       156 ~~~~k~ie~yll  167 (172)
                      ..++..|++||.
T Consensus       133 ~~~L~~L~~~l~  144 (152)
T 3eli_A          133 TSSLRKLAAELA  144 (152)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            777788888875

>2kew_A Uncharacterized protein YNDB; start domain, resonance assignments, lipid binding, structural genomics, unknown FU PSI-2; NMR {Bacillus subtilis subsp} PDB: 2kte_A

Probab=97.95  E-value=3.5e-06  Score=63.33  Aligned_cols=121  Identities=11%  Similarity=0.051  Sum_probs=72.2

Q ss_pred             ceEEEEcCCHHHHHHHhhcCCcccCCcCCCCeeeEEEEecccCCCCcEEEEEeecCCCCCcccchhcccccccccccccc
Q 038195            2 ETEVEIKSPADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSAGDFPATRTEEQTQSSHLRGLHYQWS   81 (172)
Q Consensus         2 ~~e~~i~apa~kvw~~~~d~~~~lpk~~P~~v~sve~~eGd~g~~Gsvr~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~   81 (172)
                      +.++.|+||+++||+++.|.. .+++|+|.       .+++ -.+|....+.+ .+|.                      
T Consensus        13 ~~~~~i~Ap~e~Vw~altd~~-~~~~W~~~-------~~~~-~~~Gg~~~~~~-~~g~----------------------   60 (152)
T 2kew_A           13 TKSITLEAPIQKVWETVSTSE-GIAKWFMP-------NDFQ-LKEGQEFHLQS-PFGP----------------------   60 (152)
T ss_dssp             EEEEEECSCHHHHHHHSSSSH-HHHHHHCS-------CCCC-SCSSCCBCSSS-SCCS----------------------
T ss_pred             EEEEEECCCHHHHHHHHhCHH-HHHHhcCC-------CCCC-CCCCCEEEEEe-cCCc----------------------
Confidence            568899999999999999985 78999886       2344 24555433333 1222                      


Q ss_pred             cceeeeeEEEEE-ecCCCceEEEEEEeCccccceeEEEEEEEEEecCCCcEEEEEEE-EEecCCCCCC----hh----hh
Q 038195           82 QHFVEKMKEKVE-LDPENKTVAMVVIEGDLMKHFKSYKVIIKVIPKSEGSLVKWIWE-YEKLQEDGPT----PS----KY  151 (172)
Q Consensus        82 ~~~~~~~kEri~-~D~~~~~i~Y~vieGdl~~~~~s~~~t~~v~p~~dGs~v~w~~~-ye~~~~~~~~----p~----~~  151 (172)
                            +.-++. +++. +.+.|+...+       ....++.++|.++||.++++.. |....+..+.    ..    ..
T Consensus        61 ------~~~~v~e~~p~-~~l~~~~~~~-------~~~~~~~l~~~~~gT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (152)
T 2kew_A           61 ------SPCKVLAVQAP-TELSFEWDTE-------GWVVTFQLEDLGEKTGFTLIHSGWKEPNQVIGKANEKSSVVRGKM  126 (152)
T ss_dssp             ------CCBEEEEEETT-TEEEEECTTS-------CCEEEEEEECCSSCEEEEEEECCSSCCSBCSSSSSSBHHHHHHHH
T ss_pred             ------eEEEEEEEeCC-cEEEEEEccC-------CEEEEEEEEECCCCEEEEEEEEeccCcccccccccchhHHHHHHH
Confidence                  234566 7665 5677764332       2346788899888888777644 2211001110    11    12


Q ss_pred             hHHHHHHH-HHHHHHHhh
Q 038195          152 VDFVTDLT-KNIDAHLLK  168 (172)
Q Consensus       152 ~~~~~~~~-k~ie~ylla  168 (172)
                      .+.-..++ ..|.+||-.
T Consensus       127 ~~GW~~~l~~~L~~~le~  144 (152)
T 2kew_A          127 DGGWTGIVNERLRKAVEE  144 (152)
T ss_dssp             HHHHHHHTTTHHHHHHTC
T ss_pred             HHhHHHHHHHHHHHHHhc
Confidence            23455666 777777754

>3q63_A MLL2253 protein; structural genomics, PSI-biology, protein structure initiati alpha-beta protein, unknown, structure genomics; 2.00A {Mesorhizobium loti}

Probab=97.93  E-value=4.7e-05  Score=57.18  Aligned_cols=127  Identities=10%  Similarity=0.045  Sum_probs=75.0

Q ss_pred             ceEEEEcCCHHHHHHHhhcCCcccCCcCCCCeeeEEEEecccCCCCcEEEEEeecCCCCCcccchhcccccccccccccc
Q 038195            2 ETEVEIKSPADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSAGDFPATRTEEQTQSSHLRGLHYQWS   81 (172)
Q Consensus         2 ~~e~~i~apa~kvw~~~~d~~~~lpk~~P~~v~sve~~eGd~g~~Gsvr~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~   81 (172)
                      +.++.|+||+++||+++.|.. .+++|.|.    +   +++ -.+|..-.+. ...+.                      
T Consensus        12 ~~~~~i~Ap~e~Vw~altdp~-~~~~W~~~----~---~~~-~~~Gg~~~~~-~~~g~----------------------   59 (151)
T 3q63_A           12 VVERQISHPPEKLWRALTQPH-LIEEWLMK----N---DFK-PAVGHRFNIS-ADWGG----------------------   59 (151)
T ss_dssp             EEEEEESSCHHHHHHHHHCHH-HHHHHSCE----E---CCC-SSTTCEEEEE-CTTSC----------------------
T ss_pred             EEEEEeCCCHHHHHHHHcCHH-HHHhhcCc----C---CCc-cCCCCEEEEE-CCCCC----------------------
Confidence            568899999999999999974 78999984    2   344 3566654444 11111                      


Q ss_pred             cceeeeeEEEEE-ecCCCceEEEEEEeCc--cccceeEEEEEEEEEecCCCcEEEEEEEEEecCCCCCChhhhhHHHHHH
Q 038195           82 QHFVEKMKEKVE-LDPENKTVAMVVIEGD--LMKHFKSYKVIIKVIPKSEGSLVKWIWEYEKLQEDGPTPSKYVDFVTDL  158 (172)
Q Consensus        82 ~~~~~~~kEri~-~D~~~~~i~Y~vieGd--l~~~~~s~~~t~~v~p~~dGs~v~w~~~ye~~~~~~~~p~~~~~~~~~~  158 (172)
                           .+.-++. +++. +++.|+...++  -... ..-..++.++|.++||.++++-...+..+ ...-....+.-..+
T Consensus        60 -----~~~g~v~e~~p~-~~l~~~~~~~~~~~~~~-~~s~v~~~l~~~~~gT~l~l~~~g~~~~~-~~~~~~~~~GW~~~  131 (151)
T 3q63_A           60 -----VLDCEVLAVEPN-KTLSYTWNLAHQDPAFD-LRSVVTFTLTPTPTGTHLRMEQSGFRPDQ-RRAYGGAKMGWPQF  131 (151)
T ss_dssp             -----EEEEEEEEEETT-TEEEEECBBCCSSTTTC-BCCEEEEEEEECSSSEEEEEEEECCCTTC-HHHHHHHHHHHHHH
T ss_pred             -----EEEEEEEEEeCC-CEEEEEEecCCCCCCCC-CCeEEEEEEEEcCCCEEEEEEEeCCCcch-HHHHHhhhhCHHHH
Confidence                 1445666 7664 45677654332  1111 12346788899988898887755322111 00011223455667


Q ss_pred             HHHHHHHHhh
Q 038195          159 TKNIDAHLLK  168 (172)
Q Consensus       159 ~k~ie~ylla  168 (172)
                      +..|++||-.
T Consensus       132 L~~L~~~le~  141 (151)
T 3q63_A          132 FEKLEQLLDR  141 (151)
T ss_dssp             HHHHHHHHC-
T ss_pred             HHHHHHHHhc
Confidence            7888888754

>2nn5_A Hypothetical protein EF_2215; structural genomics, APC29336, PSI-2, structure initiative; HET: MSE; 1.45A {Enterococcus faecalis} SCOP: d.129.3.5

Probab=97.89  E-value=8.6e-05  Score=58.16  Aligned_cols=118  Identities=8%  Similarity=0.030  Sum_probs=73.8

Q ss_pred             ceEEEEcCCHHHHHHHhhcCCcccCCcCCCCeeeEEEEecccCCCCcEEEEEeecCCCCCcccchhcccccccccccccc
Q 038195            2 ETEVEIKSPADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSAGDFPATRTEEQTQSSHLRGLHYQWS   81 (172)
Q Consensus         2 ~~e~~i~apa~kvw~~~~d~~~~lpk~~P~~v~sve~~eGd~g~~Gsvr~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~   81 (172)
                      +.++.|+||+++||+++.|.. .+++|+|. ....     + -.+|..-.+.+..  .                      
T Consensus        39 ~~~~~i~Ap~e~VW~altdp~-~l~~W~~~-~~~~-----d-~~~Gg~~~~~~~~--~----------------------   86 (184)
T 2nn5_A           39 GTERAISASPQTIWRYLTETD-KLKQWFPE-LEIG-----E-LGVNGFWRFILPD--F----------------------   86 (184)
T ss_dssp             EEEEEESSCHHHHHHHHHCHH-HHHHHCTT-EEEE-----E-CSTTCEEEEEETT--E----------------------
T ss_pred             EEEEEeCCCHHHHHHHHcCHH-HHHHhCCC-cccc-----c-cCCCCEEEEEEeC--C----------------------
Confidence            568899999999999999985 78999995 3222     2 1234333333321  1                      


Q ss_pred             cceeeeeEEEEE-ecCCCceEEEEEEeCccccceeEEEEEEEEEe-cCCCcEEEEEEEEEecCCCCCChhhhhHHHHHHH
Q 038195           82 QHFVEKMKEKVE-LDPENKTVAMVVIEGDLMKHFKSYKVIIKVIP-KSEGSLVKWIWEYEKLQEDGPTPSKYVDFVTDLT  159 (172)
Q Consensus        82 ~~~~~~~kEri~-~D~~~~~i~Y~vieGdl~~~~~s~~~t~~v~p-~~dGs~v~w~~~ye~~~~~~~~p~~~~~~~~~~~  159 (172)
                           ...-++. +++.. .+.|+.- +        ...++.++| .++||.++++-.|...-.  ............++
T Consensus        87 -----~~~~~v~e~~p~~-rl~~~~~-~--------~~v~~~l~~~~~~gT~l~~~~~~~~g~~--~~~~~~~~GW~~~L  149 (184)
T 2nn5_A           87 -----EETMPFTDYAEEK-YLGVTWD-T--------GIIYFDLKEQAPHQTLLVFSESLPENFT--TPRHKDIAGWSIVL  149 (184)
T ss_dssp             -----EEEEEEEEEETTT-EEEEEET-T--------EEEEEEEEEEETTEEEEEEEEEECTTCS--SCHHHHHHHHHHHH
T ss_pred             -----CceEEEEEecCCC-EEEEEEc-C--------eEEEEEEEECCCCCEEEEEEEeccCCcc--chhhHHHHHHHHHH
Confidence                 0234666 76654 5666642 1        456888999 777799998843322111  11223445667778


Q ss_pred             HHHHHHHhh
Q 038195          160 KNIDAHLLK  168 (172)
Q Consensus       160 k~ie~ylla  168 (172)
                      ..|.+||-.
T Consensus       150 ~~Lk~~le~  158 (184)
T 2nn5_A          150 NRLKQVVET  158 (184)
T ss_dssp             HHHHHHHHC
T ss_pred             HHHHHHHhc
Confidence            888888865

>2k5g_A Uncharacterized protein; structural genomiccs, protein structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} SCOP: d.129.3.5

Probab=97.72  E-value=9.3e-05  Score=57.97  Aligned_cols=135  Identities=11%  Similarity=0.090  Sum_probs=77.9

Q ss_pred             ceEEEEcCCHHHHHHHhhcCCcccCCcCCCCeeeEEEEecccCCCCcEEEEEeecCC-----CCCcccchhccccccccc
Q 038195            2 ETEVEIKSPADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSAGD-----FPATRTEEQTQSSHLRGL   76 (172)
Q Consensus         2 ~~e~~i~apa~kvw~~~~d~~~~lpk~~P~~v~sve~~eGd~g~~Gsvr~~~~~~gg-----~~~~~~~~~~~~~~~~~~   76 (172)
                      +.++.|+||+++||+++.|.. .+++|++.    +   +++ -.+|....+.+...+     .|..+             
T Consensus        22 ~~~~~i~Ap~e~Vw~altdpe-~~~~W~~~----~---~~d-~~~Gg~~~~~~~~~~~~~~~~p~~~-------------   79 (191)
T 2k5g_A           22 RFERLLPGPIERVWAWLADAD-KRARWLAG----G---ELP-RQPGQTFELHFNHAALTAETAPARY-------------   79 (191)
T ss_dssp             EEEEEESSSSHHHHHHHHCHH-HHTTTSCC----C---CCC-SSTTCEEEEEECGGGSCCSSCCSSC-------------
T ss_pred             EEEEEeCCCHHHHHHHHcCHH-HHhhcCCC----C---CCC-ccCCCEEEEEEcCCccccccCcccc-------------
Confidence            578899999999999999985 78999986    1   455 357776666664321     00000             


Q ss_pred             ccccccceeeeeEEEEE-ecCCCceEEEEEEeCccccceeEEEEEEEEEecCCCcEEEEEEE-EEecCCCCCChhhhhHH
Q 038195           77 HYQWSQHFVEKMKEKVE-LDPENKTVAMVVIEGDLMKHFKSYKVIIKVIPKSEGSLVKWIWE-YEKLQEDGPTPSKYVDF  154 (172)
Q Consensus        77 ~~~~~~~~~~~~kEri~-~D~~~~~i~Y~vieGdl~~~~~s~~~t~~v~p~~dGs~v~w~~~-ye~~~~~~~~p~~~~~~  154 (172)
                       ..|..  .-.+.-++. +++. +.+.|+...++..   .....++.++|.++||.++++-. |.   +. .........
T Consensus        80 -~~~g~--~~~~~g~v~e~~pp-~rl~~~~~~~~~~---~~~~v~~~l~~~~~gT~l~~~~~~~~---~~-~~~~~~~~G  148 (191)
T 2k5g_A           80 -AQYDR--PIVARHTLLRCEPP-RVLALTWGGGAGE---APSEVLFELSEAGEQVRLVLTHTRLA---DR-AAMLDVAGG  148 (191)
T ss_dssp             -SGGGS--CEEEEEEEEEEETT-TEEEEECCCCSSS---SCCEEEEEEEECSSSEEEEEEEECCC---SH-HHHHHHTTT
T ss_pred             -cccCC--CceeEEEEEEecCC-CEEEEEeecCCCC---CCEEEEEEEEEcCCCEEEEEEEecCC---CH-HHHHHHHHh
Confidence             00000  111345666 7654 4577765443321   12456788899888888777765 32   10 001112223


Q ss_pred             HHHHHHHHHHHHhhc
Q 038195          155 VTDLTKNIDAHLLKE  169 (172)
Q Consensus       155 ~~~~~k~ie~ylla~  169 (172)
                      ...++..|.+||-..
T Consensus       149 W~~~L~~L~~~le~~  163 (191)
T 2k5g_A          149 WHAHLAVLAGKLAGQ  163 (191)
T ss_dssp             TTTHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHHCCC
Confidence            445667777777654

>3qsz_A STAR-related lipid transfer protein; structural genomics, PSI-biology; 2.39A {Xanthomonas axonopodis PV}

Probab=97.58  E-value=0.014  Score=44.73  Aligned_cols=135  Identities=16%  Similarity=0.137  Sum_probs=82.6

Q ss_pred             eEEEEcCCHHHHHHHhhcCCcccCCcCCCCeeeEEEEecccCCCCcEEEEEeecCCCCCcccchhccccccccccccccc
Q 038195            3 TEVEIKSPADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSAGDFPATRTEEQTQSSHLRGLHYQWSQ   82 (172)
Q Consensus         3 ~e~~i~apa~kvw~~~~d~~~~lpk~~P~~v~sve~~eGd~g~~Gsvr~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~   82 (172)
                      .+..|.+||+.+|+++.|.. ..|+|.|. ++++++++-+ ++ -.|-.+.+.... |+.                  . 
T Consensus        31 ~~~~v~~s~~~v~~~l~D~~-~~~~W~~~-~~~~~vle~~-~~-~~i~y~~~~~p~-p~~------------------~-   86 (189)
T 3qsz_A           31 GEVRLKAAADDVVKVLRDAN-AFRQWMPD-VAASELLKAT-DT-EQYHYLDNSAPW-PVS------------------N-   86 (189)
T ss_dssp             EEEEESSCHHHHHHHHHCGG-GGGGTSTT-EEEEEEEEEC-SS-EEEEEEEECCSS-SCC------------------C-
T ss_pred             EEEEEECCHHHHHHHHHhHH-HhhhHHHh-cCEEEEEeec-CC-ceEEEEEeecCC-CcC------------------C-
Confidence            56788999999999999875 78999996 9999999864 22 233334433211 110                  0 


Q ss_pred             ceeeeeEEEEE-ecCCCceEEEEEEeCc--cc--cc---eeEEEEEEEEEecCCC-cEEEEEEEEEecCCCCCChhhh--
Q 038195           83 HFVEKMKEKVE-LDPENKTVAMVVIEGD--LM--KH---FKSYKVIIKVIPKSEG-SLVKWIWEYEKLQEDGPTPSKY--  151 (172)
Q Consensus        83 ~~~~~~kEri~-~D~~~~~i~Y~vieGd--l~--~~---~~s~~~t~~v~p~~dG-s~v~w~~~ye~~~~~~~~p~~~--  151 (172)
                        ..++..+-- .|.++ ++........  .+  ..   .+.+.+.+.+.| ++| |.+++....++.+.   -|.-+  
T Consensus        87 --RD~v~~~~~~~~~~g-~~~i~~~~~~~~~P~~~~~VR~~~~~~~~~i~p-~~~~t~vt~~~~~dp~G~---iP~~lvn  159 (189)
T 3qsz_A           87 --RDGVYHFTYEKAGDG-AITVRVEAVPDYLPLRKGKVRIPRAKGQWTLVP-DADGVDVTYQMHASPGGS---IPSWLAN  159 (189)
T ss_dssp             --EEEEEEEEEEECTTS-CEEEEEEECTTSSCCCTTSEECCCEEEEEEEEE-CSSSEEEEEEEEECSCSS---SCHHHHH
T ss_pred             --cceEEEEEEEECCCC-eEEEEEEcCCCccCCCCCeEEeeEeeEEEEEEE-CCCeEEEEEEEEeCCCCC---CCHHHHH
Confidence              223333333 33332 4433333221  11  11   466778899999 776 99999999998864   23333  


Q ss_pred             ---hHHHHHHHHHHHHHHhh
Q 038195          152 ---VDFVTDLTKNIDAHLLK  168 (172)
Q Consensus       152 ---~~~~~~~~k~ie~ylla  168 (172)
                         ...+..+++.|.+++..
T Consensus       160 ~~~~~~~~~~l~~L~k~~~~  179 (189)
T 3qsz_A          160 QTVVETPFGTLKALRSHLRQ  179 (189)
T ss_dssp             HTTTHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHHHhhh
Confidence               23566677777776653

>3ni8_A PFC0360W protein; heat shock, malaria, ATPase, structural genomics consortium, unknown function; 2.50A {Plasmodium falciparum}

Probab=97.54  E-value=0.001  Score=50.72  Aligned_cols=126  Identities=15%  Similarity=0.163  Sum_probs=70.2

Q ss_pred             ceEEEEcCCHHHHHHHhhcCCcccCCcCCCCeeeEEEEecccCCCCcEEEEEeecCCCCCcccchhcccccccccccccc
Q 038195            2 ETEVEIKSPADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSAGDFPATRTEEQTQSSHLRGLHYQWS   81 (172)
Q Consensus         2 ~~e~~i~apa~kvw~~~~d~~~~lpk~~P~~v~sve~~eGd~g~~Gsvr~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~   81 (172)
                      +.+..++||+++||+++.+.. .+.+|++....+++.      .+|..  +.|.. |.                      
T Consensus        22 ~~~r~~~ap~e~Vw~A~Tdpe-~l~~W~~g~~~~~d~------~~GG~--~~~~~-G~----------------------   69 (158)
T 3ni8_A           22 EITEEYYVPPEVLFNAFTDAY-TLTRLSRGSLAEVDL------KVGGK--FSLFS-GS----------------------   69 (158)
T ss_dssp             EEEEEESSCHHHHHHHHHCHH-HHHHHTTTSCCEECC------STTCE--EEETT-TT----------------------
T ss_pred             EEEEEECCCHHHHHHHhcCHH-HHHhhcCCCccEEEc------cCCCE--EEEec-CC----------------------
Confidence            567889999999999999974 788999731222222      23332  33322 23                      


Q ss_pred             cceeeeeEEEEE-ecCCCceEEEEEEeCccccceeEEEEEEEEEec-CCCcEEEEEEEEEecCCCCCC---hhhhhHHHH
Q 038195           82 QHFVEKMKEKVE-LDPENKTVAMVVIEGDLMKHFKSYKVIIKVIPK-SEGSLVKWIWEYEKLQEDGPT---PSKYVDFVT  156 (172)
Q Consensus        82 ~~~~~~~kEri~-~D~~~~~i~Y~vieGdl~~~~~s~~~t~~v~p~-~dGs~v~w~~~ye~~~~~~~~---p~~~~~~~~  156 (172)
                            +.-++. +++. ++|.|+---.+.... ..-..++.|+|. ++||.++.+-.-.+..+....   .+...+.-.
T Consensus        70 ------~~g~v~ev~p~-~rlv~tw~~~~~~~~-~~s~vt~~l~~~~~~~T~ltl~~~g~~~~~~~~~~~~~~~~~~GW~  141 (158)
T 3ni8_A           70 ------ILGEFTEITKP-HKIVEKWKFRDWNEC-DYSTVTVEFISVKENHTKLKLTHNNIPASNKYNEGGVLERCKNGWT  141 (158)
T ss_dssp             ------EEEEEEEEETT-TEEEEEEEETTSCSS-CCEEEEEEEEEEETTEEEEEEEEECCCSSCTTCCCCHHHHHHHHHH
T ss_pred             ------EEEEEEEEeCC-cEEEEEEEecCCCCC-CcEEEEEEEEecCCCCEEEEEEEEccCchhhhccchhHHHHHhChh
Confidence                  234455 7654 445555432332111 113568899994 555887776553232221111   223344555


Q ss_pred             H-HHHHHHHHHh
Q 038195          157 D-LTKNIDAHLL  167 (172)
Q Consensus       157 ~-~~k~ie~yll  167 (172)
                      . ++..|.+||-
T Consensus       142 ~~~L~~Lk~~Le  153 (158)
T 3ni8_A          142 QNFLHNIEVILG  153 (158)
T ss_dssp             HTHHHHHHHTSC
T ss_pred             HHHHHHHHHHhC
Confidence            5 6888888874

>1x53_A Activator of 90 kDa heat shock protein ATPase homolog 1; AHA1, HSP90,DUF704, C-terminal domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.129.3.5

Probab=97.50  E-value=9e-05  Score=54.88  Aligned_cols=122  Identities=10%  Similarity=0.050  Sum_probs=71.2

Q ss_pred             ceEEEEcCCHHHHHHHhhcCCcccCCcCCCCeeeEEEEecccCCCCcEEEEEeecCCCCCcccchhcccccccccccccc
Q 038195            2 ETEVEIKSPADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSAGDFPATRTEEQTQSSHLRGLHYQWS   81 (172)
Q Consensus         2 ~~e~~i~apa~kvw~~~~d~~~~lpk~~P~~v~sve~~eGd~g~~Gsvr~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~   81 (172)
                      +.++.|+||+++||+++.|.. .+++|.+. ..     +.|. .+|..  ++|. +|.                      
T Consensus        14 ~~~~~i~ap~e~Vw~altdp~-~~~~W~~~-~~-----~~d~-~~Gg~--~~~~-~G~----------------------   60 (145)
T 1x53_A           14 TLKETFLTSPEELYRVFTTQE-LVQAFTHA-PA-----TLEA-DRGGK--FHMV-DGN----------------------   60 (145)
T ss_dssp             EEEEEESSCHHHHHHHTTCHH-HHHHHSCS-CC-----BCCC-STTCC--CBBT-TTT----------------------
T ss_pred             EEEEEECCCHHHHHHHhCCHH-HHHHhcCC-Cc-----eEEC-CCCCE--EEEE-CCe----------------------
Confidence            567889999999999999874 78899864 22     2331 23322  2222 222                      


Q ss_pred             cceeeeeEEEEE-ecCCCceEEEEEEeCccccceeEEEEEEEEEecCCCcEEEEEEEEEecCCCCCChhhhhHHHHH-HH
Q 038195           82 QHFVEKMKEKVE-LDPENKTVAMVVIEGDLMKHFKSYKVIIKVIPKSEGSLVKWIWEYEKLQEDGPTPSKYVDFVTD-LT  159 (172)
Q Consensus        82 ~~~~~~~kEri~-~D~~~~~i~Y~vieGdl~~~~~s~~~t~~v~p~~dGs~v~w~~~ye~~~~~~~~p~~~~~~~~~-~~  159 (172)
                            +.-++. +++ ++++.|+-.-.+.... .....++.++|.++||.++++....+..+    .+...+.... ++
T Consensus        61 ------~~g~v~e~~p-~~~l~~~~~~~~~~~~-~~~~v~~~l~~~~~gT~l~~~~~~~~~~~----~~~~~~Gw~~~~l  128 (145)
T 1x53_A           61 ------VSGEFTDLVP-EKHIVMKWRFKSWPEG-HFATITLTFIDKNGETELCMEGRGIPAPE----EERTRQGWQRYYF  128 (145)
T ss_dssp             ------EECCEEEEET-TTEEEEEEEETTSCTT-CCEEEEEECCBCSSCEEEEEEEEEEEHHH----HHHHHHTTHHHHH
T ss_pred             ------eEEEEEEEeC-CCEEEEEEecCCCCCC-CcEEEEEEEEECCCCEEEEEEEECCCHHH----HHHHHhchhHHHH
Confidence                  122344 654 4556666554443211 12456788889877798888855433221    2233344455 67


Q ss_pred             HHHHHHHhh
Q 038195          160 KNIDAHLLK  168 (172)
Q Consensus       160 k~ie~ylla  168 (172)
                      ..|.+||-.
T Consensus       129 ~~L~~~le~  137 (145)
T 1x53_A          129 EGIKQTFGY  137 (145)
T ss_dssp             HHHHHHTCC
T ss_pred             HHHHHHHhc
Confidence            888888754

>4fpw_A CALU16; structural genomics, PSI-biology, northeast structural genom consortium, NESG, unknown function; 2.50A {Micromonospora echinospora} PDB: 2luz_A

Probab=97.25  E-value=0.00046  Score=54.13  Aligned_cols=117  Identities=9%  Similarity=0.056  Sum_probs=72.5

Q ss_pred             ceEEEEcCCHHHHHHHhhcCCcccCCcCCCCeeeEEEEecccCCCCcEEEEEeecCCCCCcccchhcccccccccccccc
Q 038195            2 ETEVEIKSPADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSAGDFPATRTEEQTQSSHLRGLHYQWS   81 (172)
Q Consensus         2 ~~e~~i~apa~kvw~~~~d~~~~lpk~~P~~v~sve~~eGd~g~~Gsvr~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~   81 (172)
                      +.+..|+||+++||+++.|.. .+++|++. .      ++| -.+|..-.+.+    .                      
T Consensus        24 ~~~r~i~Appe~Vw~alTdpe-~l~~W~~p-~------~~d-~~~Gg~~~~~~----~----------------------   68 (181)
T 4fpw_A           24 IIRQRYDAPVDEVWSACTDPN-RINRWFIE-P------KGD-LREGGNFALQG----N----------------------   68 (181)
T ss_dssp             EEEEEESSCHHHHHHHHHCHH-HHHHHSCC-E------ESC-CSTTCEEEESS----S----------------------
T ss_pred             EEEEEECCCHHHHHHHHcChH-HHhhccCC-C------ccC-CCCCCEEEEEe----c----------------------
Confidence            567889999999999999974 78999875 2      355 25565533321    1                      


Q ss_pred             cceeeeeEEEEE-ecCCCceEEEEEEeCccccceeEEEEEEEEEecCCCcEEEEEEEEEecCCCCCChhhhhHHHHHHHH
Q 038195           82 QHFVEKMKEKVE-LDPENKTVAMVVIEGDLMKHFKSYKVIIKVIPKSEGSLVKWIWEYEKLQEDGPTPSKYVDFVTDLTK  160 (172)
Q Consensus        82 ~~~~~~~kEri~-~D~~~~~i~Y~vieGdl~~~~~s~~~t~~v~p~~dGs~v~w~~~ye~~~~~~~~p~~~~~~~~~~~k  160 (172)
                            ..-++. +++ .+.|.|+...++-    .....++.|+|.++||.++++-....  +  ..-....+.-..++.
T Consensus        69 ------~~g~v~e~~p-p~rl~~tw~~~~~----~~s~vt~~l~~~~~gT~Ltl~~~~~~--~--e~~~~~~~GW~~~L~  133 (181)
T 4fpw_A           69 ------ASGDILRCEP-PRRLTISWVYEGK----PDSEVELRLSEEGDGTLLELEHATTS--E--QMLVEVGVGWEMALD  133 (181)
T ss_dssp             ------CEEECCEEET-TTEEEEEEBCTTS----CCEEEEEEEEEETTEEEEEEEEEESC--H--HHHHHHHHHHHHHHH
T ss_pred             ------CCEEEEEEcC-CcEEEEEEEcCCC----CcEEEEEEEEECCCcEEEEEEEEcCC--H--HHHHHHHHhHHHHHH
Confidence                  112344 554 4567777654432    13457889999877798887765432  1  001123345567778


Q ss_pred             HHHHHHhh
Q 038195          161 NIDAHLLK  168 (172)
Q Consensus       161 ~ie~ylla  168 (172)
                      .|.+||-.
T Consensus       134 ~L~~~L~G  141 (181)
T 4fpw_A          134 FLGMFIRG  141 (181)
T ss_dssp             HHHHHC--
T ss_pred             HHHHHhCC
Confidence            88888853

>3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum}

Probab=97.23  E-value=0.00037  Score=61.88  Aligned_cols=106  Identities=10%  Similarity=0.158  Sum_probs=79.8

Q ss_pred             ceEEEEcCCHHHHHHHhhcCCcccCCcCCCCeeeEEEEecccC-CCCcEEEEEeecCCCCCcccchhccccccccccccc
Q 038195            2 ETEVEIKSPADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDWE-SHGSVKSWTFSAGDFPATRTEEQTQSSHLRGLHYQW   80 (172)
Q Consensus         2 ~~e~~i~apa~kvw~~~~d~~~~lpk~~P~~v~sve~~eGd~g-~~Gsvr~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~   80 (172)
                      +.+..|++|++.||+.+.+.. .+++|+|. ...++++.+.++ .+|+.. +.+..  .                     
T Consensus         4 ~~~~~i~~p~~~v~~~~~~~~-~~~~~~p~-~~~~~~~~~~~~~~~G~~~-~~~~~--~---------------------   57 (516)
T 3oh8_A            4 TTSHFIPFPREMVWDWHTRKG-AVARLTPP-FIPLNPITQAERLADGTTI-FSLPA--G---------------------   57 (516)
T ss_dssp             EEEEEESSCHHHHHHHHHSTT-HHHHHSCT-TSSCEECSCCSCSSSCEEE-EECST--T---------------------
T ss_pred             EEEEEccCCHHHHHHHhcCcc-hHHHhCCC-CCceEEecCCCCCcCCeEE-EecCC--C---------------------
Confidence            568899999999999999985 77899996 778888865423 688887 66532  2                     


Q ss_pred             ccceeeeeEEEE--E-ecCCCceEEEEEEeCccccceeEEEEEEEEEecCCCcEEEEEEEEEe
Q 038195           81 SQHFVEKMKEKV--E-LDPENKTVAMVVIEGDLMKHFKSYKVIIKVIPKSEGSLVKWIWEYEK  140 (172)
Q Consensus        81 ~~~~~~~~kEri--~-~D~~~~~i~Y~vieGdl~~~~~s~~~t~~v~p~~dGs~v~w~~~ye~  140 (172)
                          .+|. -++  . +|+ .+.+...++.|.+. .|.++..+..|++.++||++..+++|..
T Consensus        58 ----~~w~-~~~~~t~~~~-~~~F~d~~~~gp~~-~~~~w~h~h~f~~~~~gt~~~d~~~~~~  113 (516)
T 3oh8_A           58 ----LKWV-ARHDLSGFLN-GSRFTDVCLTAPVK-ALANWRHVHNFVDQDGGTLITDSVSTRL  113 (516)
T ss_dssp             ----CEEE-EEECGGGCBT-TTEEEEECCSCSSG-GGSSCEEEEEEEEETTEEEEEEEEECSS
T ss_pred             ----cEEE-EEEccccccC-CCeEEEEeccCccc-ceeeeEEEEEEEEcCCCcEEEEEEEeeC
Confidence                2223 345  5 554 45788888887743 2788889999999988899999999863

>2luz_A CALU16; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Micromonospora echinospora}

Probab=96.91  E-value=0.025  Score=44.72  Aligned_cols=114  Identities=9%  Similarity=0.093  Sum_probs=70.7

Q ss_pred             ceEEEEcCCHHHHHHHhhcCCcccCCcCCCCeeeEEEEecccCCCCcEEEEEeecCCCCCcccchhcccccccccccccc
Q 038195            2 ETEVEIKSPADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSAGDFPATRTEEQTQSSHLRGLHYQWS   81 (172)
Q Consensus         2 ~~e~~i~apa~kvw~~~~d~~~~lpk~~P~~v~sve~~eGd~g~~Gsvr~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~   81 (172)
                      ..+-.++||+++||+++.+.. .+.+|++.    +   ++|. .+|..-.+    .+.                      
T Consensus        35 ~i~R~f~Ap~e~VW~AlTdpe-~l~~W~~~----~---~~d~-r~GG~~~~----~~~----------------------   79 (192)
T 2luz_A           35 IIRQRYDAPVDEVWSACTDPN-RINRWFIE----P---KGDL-REGGNFAL----QGN----------------------   79 (192)
T ss_dssp             EEEEEESSCHHHHHHHHHCHH-HHTTTSCC----E---EECC-STTSEEEE----TTS----------------------
T ss_pred             EEEEEeCCCHHHHHHHHcCHH-HHheeeCC----C---cccC-ccCcEEEe----ecc----------------------
Confidence            456778999999999999874 78999975    2   3452 44543332    111                      


Q ss_pred             cceeeeeEEEEE-ecCCCceEEEEEEeCccccceeEEEEEEEEEecCCCcEEEEEEEEEecCCCCCChhhhh---HHHHH
Q 038195           82 QHFVEKMKEKVE-LDPENKTVAMVVIEGDLMKHFKSYKVIIKVIPKSEGSLVKWIWEYEKLQEDGPTPSKYV---DFVTD  157 (172)
Q Consensus        82 ~~~~~~~kEri~-~D~~~~~i~Y~vieGdl~~~~~s~~~t~~v~p~~dGs~v~w~~~ye~~~~~~~~p~~~~---~~~~~  157 (172)
                            ..-++. +++. +.+.|+--..+-.    .-..++.++|.++||+++.+=..       ++++...   ..=..
T Consensus        80 ------~~g~v~ev~pp-~rL~~tw~~~~~~----~~~vt~~L~~~g~gT~Ltl~h~~-------~~~~~~~~~~~GW~~  141 (192)
T 2luz_A           80 ------ASGDILRCEPP-RRLTISWVYEGKP----DSEVELRLSEEGDGTLLELEHAT-------TSEQMLVEVGVGWEM  141 (192)
T ss_dssp             ------EEEEEEEEETT-TEEEEEEEESSSC----EEEEEEEEEEETTEEEEEEEEEE-------SCHHHHHHHHHHHHH
T ss_pred             ------ccceEEEEecC-eeEEEEEeecCCC----CceEEEEEEEcCCcEEEEEEEEC-------CCHHHHHHHhccHHH
Confidence                  113445 7654 4567765433321    23468899999988877765432       1233322   34466


Q ss_pred             HHHHHHHHHhh
Q 038195          158 LTKNIDAHLLK  168 (172)
Q Consensus       158 ~~k~ie~ylla  168 (172)
                      .+..|++||-.
T Consensus       142 ~Ld~L~~~L~g  152 (192)
T 2luz_A          142 ALDFLGMFIRG  152 (192)
T ss_dssp             HHHHHHHHHTT
T ss_pred             HHHHHHHHhCC
Confidence            77889999864

>1ln1_A PC-TP, phosphatidylcholine transfer protein; start domain, lipid binding protein; HET: DLP; 2.40A {Homo sapiens} SCOP: d.129.3.2 PDB: 1ln2_A* 1ln3_A*

Probab=96.88  E-value=0.059  Score=41.74  Aligned_cols=138  Identities=12%  Similarity=0.031  Sum_probs=84.5

Q ss_pred             eEEEEc-CCHHHHHHHhhcCCcccCCcCCCCeeeEEEEecccCCCCcEEEEEeecCCCCCcccchhcccccccccccccc
Q 038195            3 TEVEIK-SPADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSAGDFPATRTEEQTQSSHLRGLHYQWS   81 (172)
Q Consensus         3 ~e~~i~-apa~kvw~~~~d~~~~lpk~~P~~v~sve~~eGd~g~~Gsvr~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~   81 (172)
                      .+..|. +|++.+++++.|. ...|+|.|. ++++++++-+ |  ..|.++.+....+ .                  -.
T Consensus        56 ~~~~i~~~~~~~v~~~l~d~-~~r~~Wd~~-~~~~~vle~~-~--~~i~~~~~~~p~p-~------------------~~  111 (214)
T 1ln1_A           56 VFGVLEDCSPTLLADIYMDS-DYRKQWDQY-VKELYEQECN-G--ETVVYWEVKYPFP-M------------------SN  111 (214)
T ss_dssp             EEEEETTSCHHHHHHHHHCH-HHHHHHCTT-EEEEEEEEET-T--EEEEEEEECCCTT-S------------------CC
T ss_pred             EEEEECCCCHHHHHHHHcCH-HHHHHHHHH-HhhEEEeccC-C--CEEEEEEEEcCCC-C------------------CC
Confidence            567885 9999999999987 478999996 8999999865 2  4566666543221 1                  01


Q ss_pred             cceeeeeEEE-EE-ecCCCce---EEEEEEeCc-cc--cc---eeEEEEEEEEEecCCC-cEEEEEEEEEecCCCCCChh
Q 038195           82 QHFVEKMKEK-VE-LDPENKT---VAMVVIEGD-LM--KH---FKSYKVIIKVIPKSEG-SLVKWIWEYEKLQEDGPTPS  149 (172)
Q Consensus        82 ~~~~~~~kEr-i~-~D~~~~~---i~Y~vieGd-l~--~~---~~s~~~t~~v~p~~dG-s~v~w~~~ye~~~~~~~~p~  149 (172)
                      |+   ++-.+ .. +++....   +...-++-+ ..  ..   .+.+.+.+.+.|.++| |.+.+....++.+. .  |.
T Consensus       112 RD---~v~~~~~~~~~~~g~~~~~i~~~Sv~~p~~P~~~~~VR~~~~~~~~~i~p~~~~~t~v~~~~~~Dp~G~-i--P~  185 (214)
T 1ln1_A          112 RD---YVYLRQRRDLDMEGRKIHVILARSTSMPQLGERSGVIRVKQYKQSLAIESDGKKGSKVFMYYFDNPGGQ-I--PS  185 (214)
T ss_dssp             EE---EEEEEEEEEECSTTCCEEEEEEEECCBTTBCCCTTSEEECCEEEEEEEEECSSSSEEEEEEEEECCSSC-C--CH
T ss_pred             ce---EEEEEEEEecccCCCeEEEEEEecccCCCCCCCCCcEEEEEEEEEEEEecCCCCceEEEEEEEECCCCc-c--cH
Confidence            22   22222 22 5544322   222222222 21  12   3457778889997766 99999999998853 2  33


Q ss_pred             hhh-----HHHHHHHHHHHHHHhhcc
Q 038195          150 KYV-----DFVTDLTKNIDAHLLKEE  170 (172)
Q Consensus       150 ~~~-----~~~~~~~k~ie~ylla~~  170 (172)
                      -+.     ..+..+++.|.+++..-+
T Consensus       186 ~l~n~~~~~~~~~~l~~l~k~~~~y~  211 (214)
T 1ln1_A          186 WLINWAAKNGVPNFLKDMARACQNYL  211 (214)
T ss_dssp             HHHHHHHHTHHHHHHHHHHHHHHTC-
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHhcc
Confidence            332     355667788887776544

>1zxf_A CALC; SELF-sacrificing resistance protein, structural genomics, PSI, protein structure initiative; NMR {Micromonospora echinospora} SCOP: d.129.3.5 PDB: 2gkc_A* 2gkd_A 2l65_A*

Probab=96.29  E-value=0.0019  Score=48.56  Aligned_cols=131  Identities=12%  Similarity=0.083  Sum_probs=68.5

Q ss_pred             ceEEEEcCCHHHHHHHhhcCCcccCCcCCCCe------eeEEEEecccCCCCcEEEEEeecCCCCCcccchhcccccccc
Q 038195            2 ETEVEIKSPADKFYNTFSSKAHTVPNMSPGNL------HGVEVHEGDWESHGSVKSWTFSAGDFPATRTEEQTQSSHLRG   75 (172)
Q Consensus         2 ~~e~~i~apa~kvw~~~~d~~~~lpk~~P~~v------~sve~~eGd~g~~Gsvr~~~~~~gg~~~~~~~~~~~~~~~~~   75 (172)
                      +.++.++||+++||+++.+.   +.+|++..+      ..+++- -- |  |.. .+.. ++|..               
T Consensus         7 ~~~r~~~Ap~e~Vw~A~Td~---l~~W~~p~~~~~~~~~~~~~d-r~-G--G~~-~~~~-~~G~~---------------   62 (155)
T 1zxf_A            7 RHSVTVKADRKTAFKTFLEG---FPEWWPNNFRTTKVGAPLGVD-KK-G--GRW-YEID-EQGEE---------------   62 (155)
T ss_dssp             EEEEEESSHHHHHHHHHTTC---SSSSSSGGGSTTTTCSSCEEE-TT-T--TEE-ECCC-TTTSC---------------
T ss_pred             EEEEEEeCCHHHHHHHHHhh---HHhhcCCCccccCCCceEEEE-CC-C--CEE-EEEC-CCCCe---------------
Confidence            56788999999999999982   678875322      123332 11 1  232 2211 22220               


Q ss_pred             cccccccceeeeeEEEEE-ecCCCceEEEEE-EeCccc-cceeEEEEEEEEEecCCC-cEEEEEEEEEecCCCCC-Chhh
Q 038195           76 LHYQWSQHFVEKMKEKVE-LDPENKTVAMVV-IEGDLM-KHFKSYKVIIKVIPKSEG-SLVKWIWEYEKLQEDGP-TPSK  150 (172)
Q Consensus        76 ~~~~~~~~~~~~~kEri~-~D~~~~~i~Y~v-ieGdl~-~~~~s~~~t~~v~p~~dG-s~v~w~~~ye~~~~~~~-~p~~  150 (172)
                               .  ..-++. +++.. ++.|+- .+++.. ..-.....+++|+|.++| |+++.+-....  ...+ ....
T Consensus        63 ---------~--~~g~v~ev~pp~-rl~~tw~~~~~~~~~~~~~s~vt~~l~~~~~g~T~ltl~~~~~~--~~~~~~~~~  128 (155)
T 1zxf_A           63 ---------H--TFGLIRKVDEPD-TLVIGWRLNGFGRIDPDNSSEFTVTFVADGQKKTRVDVEHTHFD--RMGTKHAKR  128 (155)
T ss_dssp             ---------C--CCEEEEEEETTT-EEEEECCCSSSSSCCCSSCCCEEEEEEEETTTEEEEEEEECSST--TSCHHHHHH
T ss_pred             ---------E--eEEEEEEECCCC-EEEEEEecCCCCCCCCCCcEEEEEEEEECCCCcEEEEEEEeccc--ccccchhHH
Confidence                     0  112444 76554 466662 233210 111123468899999888 87766644321  1101 1111


Q ss_pred             hh----HHHHHHHHHHHHHHhhcc
Q 038195          151 YV----DFVTDLTKNIDAHLLKEE  170 (172)
Q Consensus       151 ~~----~~~~~~~k~ie~ylla~~  170 (172)
                      +.    +.-..++..|++||.+..
T Consensus       129 ~~~~~~~GW~~~l~~L~~~l~~~~  152 (155)
T 1zxf_A          129 VRNGMDKGWPTILQSFQDKIDEEG  152 (155)
T ss_dssp             HHHHHTTTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhHHHHHHHHHHHHhhhh
Confidence            22    245677889998886543

>2lio_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Bacteroides fragilis}

Probab=95.69  E-value=0.13  Score=38.50  Aligned_cols=93  Identities=8%  Similarity=0.136  Sum_probs=57.2

Q ss_pred             ceEEEEcCCH-HHHHHHhhcCCcccCCcCCCCeeeEEEEecccCCCCcEEEEEeecCCCCCcccchhccccccccccccc
Q 038195            2 ETEVEIKSPA-DKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSAGDFPATRTEEQTQSSHLRGLHYQW   80 (172)
Q Consensus         2 ~~e~~i~apa-~kvw~~~~d~~~~lpk~~P~~v~sve~~eGd~g~~Gsvr~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~   80 (172)
                      +.|+.|+||+ ++||++++.. ..|-.|+.+.+.    ..|.        ..+|.-++.                     
T Consensus         7 ~~e~~i~A~~~~~VW~~IStP-egL~~Wfad~v~----~~g~--------~~~F~w~~~---------------------   52 (136)
T 2lio_A            7 HLEYLLNATSKNILWSAISTP-TGLEDWFADKVV----SDDK--------TVTFCWGKT---------------------   52 (136)
T ss_dssp             EEEEEECTTSCTHHHHGGGSH-HHHTTTSSSEEE----EETT--------EEEEESSSS---------------------
T ss_pred             EEEEEecCChHHHHHHHhCCh-hhhhcccCCCCc----ccCc--------eEEEEeCCC---------------------
Confidence            5688999999 9999999987 478899987533    2343        223322321                     


Q ss_pred             ccceeeeeEEEEE-ecCCCceEEEEEEeCccccceeEEEEEEEEEecC--CCcEEEEEEEEE
Q 038195           81 SQHFVEKMKEKVE-LDPENKTVAMVVIEGDLMKHFKSYKVIIKVIPKS--EGSLVKWIWEYE  139 (172)
Q Consensus        81 ~~~~~~~~kEri~-~D~~~~~i~Y~vieGdl~~~~~s~~~t~~v~p~~--dGs~v~w~~~ye  139 (172)
                          .. ..-+|. +++. +.++|+=..-+    ..++..++++...+  +|+.++.+ .|-
T Consensus        53 ----~~-~~~~v~~~~~~-~~i~FrW~~~~----~~~~~~e~~l~~~~~t~~~~L~vt-dFa  103 (136)
T 2lio_A           53 ----EQ-RQAGIVAIRAY-SFIRFHWLDDE----NERDYFEIKMSYNELTGDYVLEIT-DFS  103 (136)
T ss_dssp             ----SE-EEEEEEEEETT-TEEEEEESSSS----SSSCEEEEEEEECTTTSCEEEEEE-EEE
T ss_pred             ----Cc-EeEEEEEEcCC-CEEEEEccCCC----CCceEEEEEEEecCCCCcEEEEEe-cCC
Confidence                11 356666 7655 45777764321    23345677777766  55666555 444

>2ffs_A Hypothetical protein PA1206; 7-stranded beta sheet, C-terminal helix, structural genomics protein structure initiative; HET: MSE; 2.50A {Pseudomonas aeruginosa} SCOP: d.129.3.7

Probab=95.52  E-value=0.15  Score=39.39  Aligned_cols=110  Identities=12%  Similarity=0.112  Sum_probs=66.3

Q ss_pred             HHHHHHHhhcCCcccCCcCCCCeeeEEEEecccCCCCcEEEEEeecCCCCCcccchhcccccccccccccccceeeeeEE
Q 038195           11 ADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSAGDFPATRTEEQTQSSHLRGLHYQWSQHFVEKMKE   90 (172)
Q Consensus        11 a~kvw~~~~d~~~~lpk~~P~~v~sve~~eGd~g~~Gsvr~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kE   90 (172)
                      .+.+|+-+...+..-..++|. +.+|++++-.  ...-.|.++|..+ .                            +.|
T Consensus        22 r~QlW~GL~~kar~p~~Fvp~-i~~c~Vlse~--~~~~~R~l~fg~~-~----------------------------i~e   69 (157)
T 2ffs_A           22 RLQLWEGLVCRAREPQYFVVG-LERFEILVDD--GDRLHRRLYLPGL-V----------------------------VED   69 (157)
T ss_dssp             HHHHHHHHHHHHHCGGGTCTT-CCEEEEEEEC--SSEEEEEEEETTE-E----------------------------EEE
T ss_pred             HHHHHHHHHHHhcChhhcccc-cCeEEEEecC--CCeEEEEEEECCC-c----------------------------cce
Confidence            468999998765444567884 9999999854  2367799999654 3                            678


Q ss_pred             EEEecCCCceEEEEEEeC-c-cccceeEEEEEEEEEecCCCcEEEEEEEEEecCCC-CCChhhhhHHHHHHH
Q 038195           91 KVELDPENKTVAMVVIEG-D-LMKHFKSYKVIIKVIPKSEGSLVKWIWEYEKLQED-GPTPSKYVDFVTDLT  159 (172)
Q Consensus        91 ri~~D~~~~~i~Y~vieG-d-l~~~~~s~~~t~~v~p~~dGs~v~w~~~ye~~~~~-~~~p~~~~~~~~~~~  159 (172)
                      ++.+++..+ +.|.+-.- + .+   .+..  +.++-..+| ..-.++.|+...+. ++....+.++...++
T Consensus        70 ~vtl~~~~~-v~f~~~~t~~~~g---s~lt--n~Iee~~~g-~L~lrF~ye~~~p~~s~e~~~~~~~~~~ay  134 (157)
T 2ffs_A           70 EVVLKAPDS-AHYSIKPSAEVAG---GSLD--MTIEEPEPG-SLFVRFAYCTRYLQPLGDELPYDAFVKQAY  134 (157)
T ss_dssp             EEEEETTTE-EEEEECCCSSSBE---EEEE--EEEEEEETT-EEEEEEEEEEECSCC--CCCCCBHHHHHHH
T ss_pred             EEEEcCCcE-EEEEcccccCCCC---ceEE--EEEeeCCCC-cEEEEEEEEccCCCCChHHHHHHHHHHHHH
Confidence            888766554 77777541 1 11   2333  333333344 56677888776554 233333444444443

>2e3n_A Lipid-transfer protein CERT; ceramide transfer, lipid transport; HET: 6CM; 1.40A {Homo sapiens} PDB: 2e3m_A* 2e3o_A* 2e3p_A* 2e3q_A* 2e3r_A* 2e3s_A 2z9y_A* 3h3q_A* 3h3r_A* 3h3s_A* 3h3t_A* 2z9z_A*

Probab=91.40  E-value=1.6  Score=34.73  Aligned_cols=49  Identities=10%  Similarity=0.026  Sum_probs=36.8

Q ss_pred             EEEE-cCCHHHHHHHhhcCCcccCCcCCCCeeeEEEEec-ccCCCCcEEEEEeec
Q 038195            4 EVEI-KSPADKFYNTFSSKAHTVPNMSPGNLHGVEVHEG-DWESHGSVKSWTFSA   56 (172)
Q Consensus         4 e~~i-~apa~kvw~~~~d~~~~lpk~~P~~v~sve~~eG-d~g~~Gsvr~~~~~~   56 (172)
                      ...+ .++++.+++++.|.. ..++|.|. ++++++++- +.  .+.|.++.+..
T Consensus        78 ~~~~~~~~~~~v~~~l~d~~-~r~~Wd~~-~~~~~vle~i~~--~~~i~y~~~~~  128 (255)
T 2e3n_A           78 THAVKGVTGHEVCNYFWNVD-VRNDWETT-IENFHVVETLAD--NAIIIYQTHKR  128 (255)
T ss_dssp             EEEEETCCHHHHHHHHHCGG-GHHHHCCS-EEEEEEEEEEET--TEEEEEEEECC
T ss_pred             EEEEcCCCHHHHHHHHhCcc-hHhhhhhh-cceeEEEEEcCC--CCEEEEEEeec
Confidence            3445 499999999999874 78999995 999999986 41  23566666643

>3fo5_A Thioesterase, adipose associated, isoform BFIT2; orthogonal bundle, consortium, lipid transport; HET: 1PE TCE; 2.00A {Homo sapiens}

Probab=90.80  E-value=2  Score=35.23  Aligned_cols=140  Identities=11%  Similarity=-0.036  Sum_probs=78.1

Q ss_pred             eEEEEcCCHHHHHHHhhcCCcccCCcCCCCeeeEEEEecccCCCCcEEEEEeecCCCCCcccchhccccccccccccccc
Q 038195            3 TEVEIKSPADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSAGDFPATRTEEQTQSSHLRGLHYQWSQ   82 (172)
Q Consensus         3 ~e~~i~apa~kvw~~~~d~~~~lpk~~P~~v~sve~~eGd~g~~Gsvr~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~   82 (172)
                      .+..|++|++.+|+.+.|. ...|+|.+. ++++++++-=.+. -.|-++.....+.+                  ...|
T Consensus        92 ~~~~v~~~~~~v~~~L~D~-~~R~~WD~~-~~~~~vle~id~~-~ivY~~~~p~~~~~------------------v~~R  150 (258)
T 3fo5_A           92 MEMVVHVDAAQAFLLLSDL-RQRPEWDKH-YRSVELVQQVDED-DAIYHVTSPALGGH------------------TKPQ  150 (258)
T ss_dssp             EEEEESSCHHHHHHHHHCG-GGGGGTCTT-CCEEEEEEEEETT-EEEEEEEECCCTTC------------------SSCE
T ss_pred             EEEEEeCCHHHHHHHHhCc-hhHhHhhhh-ccEEEEEEEcCCC-eEEEEEecCCccCC------------------CCCC
Confidence            5677899999999999976 468999996 8899998742111 12223322111010                  1122


Q ss_pred             ceeeeeEEEEE---ecCC-CceEEEEEEeCc-ccc--c---eeEEEEEEEEEecCCC-cEEEEEEEEEecCCCCCChhhh
Q 038195           83 HFVEKMKEKVE---LDPE-NKTVAMVVIEGD-LMK--H---FKSYKVIIKVIPKSEG-SLVKWIWEYEKLQEDGPTPSKY  151 (172)
Q Consensus        83 ~~~~~~kEri~---~D~~-~~~i~Y~vieGd-l~~--~---~~s~~~t~~v~p~~dG-s~v~w~~~ye~~~~~~~~p~~~  151 (172)
                      +   ++.-|..   .++. ...+..+=++-+ ...  .   .+.+.+-+-+.|.++| |.|.+...-++..    -|--.
T Consensus       151 D---FV~lr~~r~~~~~G~~yvi~~~SV~hp~~Pp~~g~VR~~~~~sg~~I~P~~~~~t~VtY~~q~dpG~----lP~~~  223 (258)
T 3fo5_A          151 D---FVILASRRKPCDNGDPYVIALRSVTLPTHRETPEYRRGETLCSGFCLWREGDQLTKVSYYNQATPGV----LNYVT  223 (258)
T ss_dssp             E---EEEEEEEECCSSTTCCEEEEEEEEECTTSCCCTTSEECCCSSEEEEEEEEETTEEEEEEEESCCGGG----HHHHH
T ss_pred             E---EEEEEEEEeccCCCCEEEEEEEeccCCCCCCCCCCEEEEEcCcEEEEEECCCCCEEEEEEEeeCCCC----CCceE
Confidence            3   2222222   2222 245554444443 221  1   2456678889998887 8887765555421    11111


Q ss_pred             ------hHHHHHHHHHHHHHHhhcc
Q 038195          152 ------VDFVTDLTKNIDAHLLKEE  170 (172)
Q Consensus       152 ------~~~~~~~~k~ie~ylla~~  170 (172)
                            -..+...++++.+||..+.
T Consensus       224 ~n~~g~s~~~~~t~~~~~~fl~~~~  248 (258)
T 3fo5_A          224 TNVAGLSSEFYTTFKACEQFLLDNR  248 (258)
T ss_dssp             HHHHTSCCHHHHHHHHHHHHHHHTC
T ss_pred             EeccccchHHHHHHHHHHHHHHhcc
Confidence                  1244566778888887653

>3p0l_A Steroidogenic acute regulatory protein, mitochond; structural genomics consortium, SGC, start domain, cholester transport, cholesterol; 3.40A {Homo sapiens}

Probab=89.44  E-value=6.2  Score=30.55  Aligned_cols=137  Identities=9%  Similarity=0.139  Sum_probs=76.8

Q ss_pred             eEEEEcCCHHHHHHHhh-cCCcccCCcCCCCeeeEEEEecccCCCCc-EEEEEeecC-CCCCcccchhcccccccccccc
Q 038195            3 TEVEIKSPADKFYNTFS-SKAHTVPNMSPGNLHGVEVHEGDWESHGS-VKSWTFSAG-DFPATRTEEQTQSSHLRGLHYQ   79 (172)
Q Consensus         3 ~e~~i~apa~kvw~~~~-d~~~~lpk~~P~~v~sve~~eGd~g~~Gs-vr~~~~~~g-g~~~~~~~~~~~~~~~~~~~~~   79 (172)
                      .+..+++|++.+|+++. |. ...++|.+. ++++++++--.+  .+ |-+..+... ..|+                  
T Consensus        59 ~~~~v~~~~~~v~~~l~~d~-~~r~~Wd~~-~~~~~vle~~~~--~t~I~y~~~~~~~~~~v------------------  116 (221)
T 3p0l_A           59 LEVVVDQPMERLYEELVERM-EAMGEWNPN-VKEIKVLQKIGK--DTFITHELAAEAAGNLV------------------  116 (221)
T ss_dssp             EEEEESSCHHHHHHHHTTTG-GGTTTSCTT-CSEEEEEEECSS--SEEEEEEEECC---CCS------------------
T ss_pred             EEEEEcCCHHHHHHHHHhcc-chhhhcCcc-hheEEEEEecCC--CeEEEEEeeccccCCcc------------------
Confidence            46678999999999985 54 468999996 999999885311  22 222222211 1111                  


Q ss_pred             cccceeeeeEEEEE-ecCCCceEEEEEEeCc-cc--cc---eeEEEEEEEEEecCCC---cEEEEEEEEEecCCCCCChh
Q 038195           80 WSQHFVEKMKEKVE-LDPENKTVAMVVIEGD-LM--KH---FKSYKVIIKVIPKSEG---SLVKWIWEYEKLQEDGPTPS  149 (172)
Q Consensus        80 ~~~~~~~~~kEri~-~D~~~~~i~Y~vieGd-l~--~~---~~s~~~t~~v~p~~dG---s~v~w~~~ye~~~~~~~~p~  149 (172)
                      ..|+   ++--|.. -++....+...-++-+ .+  +.   .+.+.+-+.+.|.++|   |.++|....++++.   -|.
T Consensus       117 ~~RD---fv~~r~~~~~~~~~vi~~~Sv~~~~~P~~~g~VR~~~~~~g~~i~p~~~~~~~t~vt~~~~~Dp~G~---iP~  190 (221)
T 3p0l_A          117 GPRD---FVSVRCAKRRGSTCVLAGMATDFGNMPEQKGVIRAEHGPTCMVLHPLAGSPSKTKLTWLLSIDLKGW---LPK  190 (221)
T ss_dssp             CCEE---EEEEEEEEECSSCEEECCEECCCTTSCCCTTSEECEECSCEEEEEEETTEEEEEEEEEEECEECCSS---CCH
T ss_pred             CCce---EEEEEEEEEcCCeEEEEEEeccCCCCCCCCCeEEEeccceEEEEEECCCCCCcEEEEEEEEecCCCC---CCH
Confidence            1223   2222222 2333332222223322 22  11   2345567788887765   99999998888875   233


Q ss_pred             hhh-----HHHHHHHHHHHHHHh
Q 038195          150 KYV-----DFVTDLTKNIDAHLL  167 (172)
Q Consensus       150 ~~~-----~~~~~~~k~ie~yll  167 (172)
                      -+.     .....+++.|.+++.
T Consensus       191 ~lvn~~~~~~~~~~~~~Lr~~~~  213 (221)
T 3p0l_A          191 SIINQVLSQTQVDFANHLRKRLE  213 (221)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHh
Confidence            332     344566677777776

>1em2_A MLN64 protein; beta barrel, lipid binding protein; HET: TAR; 2.20A {Homo sapiens} SCOP: d.129.3.2

Probab=88.60  E-value=7.2  Score=30.26  Aligned_cols=140  Identities=5%  Similarity=-0.022  Sum_probs=77.3

Q ss_pred             eEEEEcCCHHHHH-HHhhcCCcccCCcCCCCeeeEEEEecccCCCCcEEEEEeecC-CCCCcccchhccccccccccccc
Q 038195            3 TEVEIKSPADKFY-NTFSSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSAG-DFPATRTEEQTQSSHLRGLHYQW   80 (172)
Q Consensus         3 ~e~~i~apa~kvw-~~~~d~~~~lpk~~P~~v~sve~~eGd~g~~Gsvr~~~~~~g-g~~~~~~~~~~~~~~~~~~~~~~   80 (172)
                      .+..+.+|++.+| .++.|. ...++|-+. +.++++++--.+. -.|-+....+. +.|                  ..
T Consensus        70 ~~~~v~~~~~~v~~~~~~d~-~~r~~Wd~~-~~~~~vle~~~~~-t~I~~~~~~p~~~~~------------------~~  128 (229)
T 1em2_A           70 LKTFLPCPAELVYQEVILQP-ERMVLWNKT-VTACQILQRVEDN-TLISYDVSAGAAGGV------------------VS  128 (229)
T ss_dssp             EEEEESSCHHHHHHHTTTCH-HHHTTTCTT-EEEEEEEEEETTT-EEEEEEEECCBTTTT------------------BC
T ss_pred             EEEEecCCHHHHHHHHHhCc-cchhhcccc-cceEEEEEecCCC-eEEEEEEecCcCCCC------------------cC
Confidence            4567799999999 777765 468999996 9999998853111 12322222111 111                  11


Q ss_pred             ccceeeeeEEEEE-ecCCCceEEEEEEeCc-ccc--c---eeEEEEEEEEEecC--CC-cEEEEEEEEEecCCCCCChhh
Q 038195           81 SQHFVEKMKEKVE-LDPENKTVAMVVIEGD-LMK--H---FKSYKVIIKVIPKS--EG-SLVKWIWEYEKLQEDGPTPSK  150 (172)
Q Consensus        81 ~~~~~~~~kEri~-~D~~~~~i~Y~vieGd-l~~--~---~~s~~~t~~v~p~~--dG-s~v~w~~~ye~~~~~~~~p~~  150 (172)
                      .|+   ++.-|-- .++....+...=++-+ ...  .   ...+.+-+.+.|-+  .+ |.++|.....+.+. .|  .-
T Consensus       129 ~RD---fv~~r~~~~~~~~~vi~~~Sv~~~~~P~~~~~VR~~~~~~g~~i~p~~~~~~~t~vt~~~~~Dp~G~-iP--~~  202 (229)
T 1em2_A          129 PRD---FVNVRRIERRRDRYLSSGIATSHSAKPPTHKYVRGENGPGGMIVLKSASNPRVCTFVWILNTDLKGR-LP--RY  202 (229)
T ss_dssp             CEE---EEEEEEEEECSSEEEEEEEECCCTTSCCCTTSEECEECSEEEEEEECSSCTTCEEEEEEECEECCSS-SC--HH
T ss_pred             CCe---eEEEEEEEEcCCEEEEEEecccCCCCCCCCCCEeeeecccEEEEEecCCCCCcEEEEEEEEECCCCC-CC--HH
Confidence            223   2322333 3333333333333333 211  1   33455667888854  34 99999998888874 33  33


Q ss_pred             hh-----HHHHHHHHHHHHHHhhc
Q 038195          151 YV-----DFVTDLTKNIDAHLLKE  169 (172)
Q Consensus       151 ~~-----~~~~~~~k~ie~ylla~  169 (172)
                      +.     ..+..+++.|.+++.+.
T Consensus       203 l~n~~~~~~~~~~~~~Lr~~~~~~  226 (229)
T 1em2_A          203 LIHQSLAATMFEFAFHLRQRISEL  226 (229)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh
Confidence            22     34556667777776654

>2pso_A STAR-related lipid transfer protein 13; alpha and beta protein, lipid binding, helix swapping, struc genomics, structural genomics consortium, SGC; 2.80A {Homo sapiens} SCOP: d.129.3.2

Probab=85.36  E-value=12  Score=29.58  Aligned_cols=137  Identities=13%  Similarity=0.084  Sum_probs=77.6

Q ss_pred             eEEEEcCCHHHHHH-HhhcCCcccCCcCCCCeeeEEEEecccCCCCcEEEEEeecCCCCCcccchhcccccccccccccc
Q 038195            3 TEVEIKSPADKFYN-TFSSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSAGDFPATRTEEQTQSSHLRGLHYQWS   81 (172)
Q Consensus         3 ~e~~i~apa~kvw~-~~~d~~~~lpk~~P~~v~sve~~eGd~g~~Gsvr~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~   81 (172)
                      .+..|+++++.++. ++.|    .++|.|. +.++++++--. .--.|-++.+.  .+ .+.                -.
T Consensus        79 ~~~~v~~~~~~v~~~ll~d----r~~Wd~~-~~~~~vle~id-~~~~I~y~~~~--~p-~p~----------------~~  133 (237)
T 2pso_A           79 ASVEVEAPPSVVLNRVLRE----RHLWDED-FVQWKVVETLD-RQTEIYQYVLN--SM-APH----------------PS  133 (237)
T ss_dssp             EEEEESSCHHHHHHHHHHC----GGGTCTT-BCCCEEEEEEE-TTEEEEEEEEC--CS-SSC----------------CC
T ss_pred             EEEEEcCChHHHHHHHHhh----hhhHHhh-hceEEEEEEcC-CCcEEEEEEec--CC-CCc----------------CC
Confidence            57788899888765 5555    4899996 88888888531 11234444443  22 111                11


Q ss_pred             cceeeeeEEEEE---ecCCCceEEEEEEeCc-ccc----ceeEEEEEEEEEecCCC-cEEEEEEEEEecCCCCCChh-h-
Q 038195           82 QHFVEKMKEKVE---LDPENKTVAMVVIEGD-LMK----HFKSYKVIIKVIPKSEG-SLVKWIWEYEKLQEDGPTPS-K-  150 (172)
Q Consensus        82 ~~~~~~~kEri~---~D~~~~~i~Y~vieGd-l~~----~~~s~~~t~~v~p~~dG-s~v~w~~~ye~~~~~~~~p~-~-  150 (172)
                      |+   ++.-|--   .++....+..+-++.. .+.    ....+.+-+-+.|.+.| |.++|.....+.+- .|.-- . 
T Consensus       134 RD---fv~~r~~r~~~~~g~~vi~~~Sv~h~~~P~~g~VR~~~~~~g~~i~P~~~~~t~vt~~~~~Dp~G~-iP~~ln~~  209 (237)
T 2pso_A          134 RD---FVVLRTWKTDLPKGMCTLVSLSVEHEEAQLLGGVRAVVMDSQYLIEPCGSGKSRLTHICRIDLKGH-SPEWYSKG  209 (237)
T ss_dssp             EE---EEEEEEEESCCGGGCEEEEEEECCCTTCCCCSSEECCEEEEEEEEEECSTTCEEEEEEEEECCSSS-CTTTTTTH
T ss_pred             eE---EEEEEEEEEECCCCEEEEEEEcccCCCCCCCCcEEEEEeccEEEEEECCCCCEEEEEEEEeCCCCC-chHHHHHH
Confidence            22   2222222   3445555555555443 211    23467788889998766 99999999999863 33211 1 


Q ss_pred             hhHHHHHHHHHHHHHHhh
Q 038195          151 YVDFVTDLTKNIDAHLLK  168 (172)
Q Consensus       151 ~~~~~~~~~k~ie~ylla  168 (172)
                      +...+...++.|-+++.+
T Consensus       210 ~~~~~~~~l~~LR~~~~~  227 (237)
T 2pso_A          210 FGHLCAAEVARIRNSFQP  227 (237)
T ss_dssp             HHHHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHHHHHHHHHHh
Confidence            123344455666665544

>1jss_A Stard4, cholesterol-regulated start protein 4; start domain, structural genomics, PSI, protein structure initiative; 2.20A {Mus musculus} SCOP: d.129.3.2

Probab=82.78  E-value=15  Score=28.48  Aligned_cols=139  Identities=11%  Similarity=-0.031  Sum_probs=74.1

Q ss_pred             eEEEEcCCHHHHHHHhhcCCcccCCcCCCCeeeEEEEecccCCCCcEEEEEeecCCCCCcccchhccccccccccccccc
Q 038195            3 TEVEIKSPADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSAGDFPATRTEEQTQSSHLRGLHYQWSQ   82 (172)
Q Consensus         3 ~e~~i~apa~kvw~~~~d~~~~lpk~~P~~v~sve~~eGd~g~~Gsvr~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~   82 (172)
                      .+..|++|++.+|+.+.|.. .-++|-+. ++++++++--.+. -.|-+..+.  ..+.               .+...|
T Consensus        71 ~~~~v~~~~~~v~~~l~d~~-~r~~Wd~~-~~~~~vle~id~~-~~I~y~~~~--~~~~---------------~~v~~R  130 (224)
T 1jss_A           71 AQGVMDDVVNNVIDHIRPGP-WRLDWDRL-MTSLDVLEHFEEN-CCVMRYTTA--GQLL---------------NIISPR  130 (224)
T ss_dssp             EEEEESSCHHHHHHHHSSST-THHHHCSS-EEEEEEEEECSTT-EEEEEEEEC--CBTT---------------TTBCCE
T ss_pred             EEEEEeCCHHHHHHHHhCcc-cccccccc-eeeEEEEEEcCCC-eEEEEEEcc--cccC---------------CCCCCC
Confidence            46788999999999999864 45899995 9999999853111 123333322  2110               011123


Q ss_pred             ceeeeeEEEEE-ecCCCceEEEEEEeCc-cccc---eeEEEEEEEEEecCC---CcEEEEEEEEEecCCCCCChhhhhH-
Q 038195           83 HFVEKMKEKVE-LDPENKTVAMVVIEGD-LMKH---FKSYKVIIKVIPKSE---GSLVKWIWEYEKLQEDGPTPSKYVD-  153 (172)
Q Consensus        83 ~~~~~~kEri~-~D~~~~~i~Y~vieGd-l~~~---~~s~~~t~~v~p~~d---Gs~v~w~~~ye~~~~~~~~p~~~~~-  153 (172)
                      +   ++--+-- -++.+..+...-++-. ....   ...+.+-+.+.|-++   .|.++|.+.-++++. .  |.-+.+ 
T Consensus       131 D---fv~~r~~~~~~~~~vi~~~Sv~hp~~~~g~VR~~~~~~g~~i~p~~~~~~~t~vt~~~~~Dp~G~-i--P~~lvn~  204 (224)
T 1jss_A          131 E---FVDFSYTVGYEEGLLSCGVSVEWSETRPEFVRGYNHPCGWFCVPLKDSPSQSLLTGYIQTDLRGM-I--PQSAVDT  204 (224)
T ss_dssp             E---EEEEEEEEEETTEEEEEEEECCCCCCCTTSEECEECSEEEEEEEETTEEEEEEEEEEECEECCSC-C--CHHHHHH
T ss_pred             e---EEEEEEEEEcCCeEEEEEeeeecCCCCCCCEEEEecccEEEEEEcCCCCCceEEEEEEEeCCCCC-c--cHHHHHH
Confidence            3   2222222 2223322222222211 1111   234556678888654   299999998888874 2  333332 


Q ss_pred             ----HHHHHHHHHHHHHh
Q 038195          154 ----FVTDLTKNIDAHLL  167 (172)
Q Consensus       154 ----~~~~~~k~ie~yll  167 (172)
                          .....++.|.+++.
T Consensus       205 ~~~~~~~~~~~~Lr~~~~  222 (224)
T 1jss_A          205 AMASTLANFYSDLRKGLR  222 (224)
T ss_dssp             HHHHHHHHHHHHHHHHTC
T ss_pred             HHHHhHHHHHHHHHHHHh
Confidence                33445555555543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	172
d1vjha_	120	d.129.3.1 (A:) Hypothetical protein At1G24000 {Tha	9e-31
d1fm4a_	159	d.129.3.1 (A:) Major tree pollen allergen {Europea	4e-25
d1e09a_	159	d.129.3.1 (A:) Major tree pollen allergen {Sweet c	5e-25
d2bk0a1	153	d.129.3.1 (A:2-154) Major allergen api g 1 {Celery	5e-25
d1xdfa1	157	d.129.3.1 (A:1-157) Plant pathogenesis-related pro	5e-24
d1icxa_	155	d.129.3.1 (A:) Plant pathogenesis-related protein	6e-22
d1txca1	147	d.129.3.1 (A:1-147) Plant pathogenesis-related pro	8e-18

>d1vjha_ d.129.3.1 (A:) Hypothetical protein At1G24000 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 120

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Hypothetical protein At1G24000
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  106 bits (265), Expect = 9e-31
 Identities = 35/171 (20%), Positives = 61/171 (35%), Gaps = 61/171 (35%)

Query: 1   METEVEIKSPADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSAGDFP 60
           +  + ++K PADKF++ F                 VE     +E +G             
Sbjct: 7   LSVKFDVKCPADKFFSAF-----------------VEDTNRPFEKNG------------- 36

Query: 61  ATRTEEQTQSSHLRGLHYQWSQHFVEKMKEKVE-LDPENKTVAMVVIEGDLMKHFKSYKV 119
                                       K ++E +D   KT+ + +   ++ K+FK+ K 
Sbjct: 37  ----------------------------KTEIEAVDLVKKTMTIQMSGSEIQKYFKTLKG 68

Query: 120 IIKVIPKS--EGSLVKWIWEYEKLQEDGPTPSKYVDFVTDLTKNIDAHLLK 168
            I V P    +GS V W + +EK+ +D   P   +D      K +D  +L 
Sbjct: 69  SIAVTPIGVGDGSHVVWTFHFEKVHKDIDDPHSIIDESVKYFKKLDEAILN 119

>d1fm4a_ d.129.3.1 (A:) Major tree pollen allergen {European white birch (Betula pendula), Bet v 1-l [TaxId: 3505]} Length = 159

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Major tree pollen allergen
species: European white birch (Betula pendula), Bet v 1-l [TaxId: 3505]

 Score = 92.6 bits (230), Expect = 4e-25
 Identities = 32/173 (18%), Positives = 61/173 (35%), Gaps = 33/173 (19%)

Query: 2   ETEVEIKSPADKFYNTFSSKAHTV-PNMSPGNLHGVEVHEGDWESHGSVKSWTFSAGDFP 60
           ETE     PA + +  F      + P ++P  +  VE  EG+    G++K   F  G   
Sbjct: 6   ETEATSVIPAARMFKAFILDGDKLVPKVAPQAISSVENIEGNG-GPGTIKKINFPEGFPF 64

Query: 61  ATRTEEQTQSSHLRGLHYQWSQHFVEKMKEKVE-LDPENKTVAMVVIEGD-LMKHFKSYK 118
                                      +K++V+ +D  N      VIEG  +    +   
Sbjct: 65  KY-------------------------VKDRVDEVDHTNFKYNYSVIEGGPVGDTLEKIS 99

Query: 119 VIIKVIPKSE-GSLVKWIWEYEKLQEDGPTPSK---YVDFVTDLTKNIDAHLL 167
             IK++   + G ++K   +Y           +     +    L + ++++LL
Sbjct: 100 NEIKIVATPDGGCVLKISNKYHTKGNHEVKAEQVKASKEMGETLLRAVESYLL 152

>d1e09a_ d.129.3.1 (A:) Major tree pollen allergen {Sweet cherry (Prunus avium), pru av 1 [TaxId: 42229]} Length = 159

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Major tree pollen allergen
species: Sweet cherry (Prunus avium), pru av 1 [TaxId: 42229]

 Score = 92.3 bits (229), Expect = 5e-25
 Identities = 35/174 (20%), Positives = 63/174 (36%), Gaps = 33/174 (18%)

Query: 1   METEVEIKSPADKFYNTFSSKAHTV-PNMSPGNLHGVEVHEGDWESHGSVKSWTFSAGDF 59
            E+E   + P  + +  F   A  + P ++P  +   E+ EGD    G++K  TF  G  
Sbjct: 5   YESEFTSEIPPPRLFKAFVLDADNLVPKIAPQAIKHSEILEGDG-GPGTIKKITFGEG-- 61

Query: 60  PATRTEEQTQSSHLRGLHYQWSQHFVEKMKEKVE-LDPENKTVAMVVIEGD-LMKHFKSY 117
                                       +K K++ +D EN + +  +IEGD L    +  
Sbjct: 62  -----------------------SQYGYVKHKIDSIDKENYSYSYTLIEGDALGDTLEKI 98

Query: 118 KVIIKVIPKSE-GSLVKWIWEYEKLQEDGPTPSK---YVDFVTDLTKNIDAHLL 167
               K++     GS++K    Y                 +  ++L K I+ +L 
Sbjct: 99  SYETKLVASPSGGSIIKSTSHYHTKGNVEIKEEHVKAGKEKASNLFKLIETYLK 152

>d2bk0a1 d.129.3.1 (A:2-154) Major allergen api g 1 {Celery (Apium graveolens) [TaxId: 4045]} Length = 153

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Major allergen api g 1
species: Celery (Apium graveolens) [TaxId: 4045]

 Score = 92.2 bits (229), Expect = 5e-25
 Identities = 33/174 (18%), Positives = 63/174 (36%), Gaps = 34/174 (19%)

Query: 1   METEVEIKSPADKFYNTFSSKAHTV-PNMSPGNLHGVEVHEGDWESHGSVKSWTFSAGDF 59
              E+     A+K +  F     TV P  +PG    VE+        G++K  T   G  
Sbjct: 5   HVLELTSSVSAEKIFQGFVIDVDTVLPKAAPGAYKSVEIK--GDGGPGTLKIITLPDG-- 60

Query: 60  PATRTEEQTQSSHLRGLHYQWSQHFVEKMKEKVE-LDPENKTVAMVVIEGD-LMKHFKSY 117
                                    +  M  +++ ++ E  T    VI+GD L+   +S 
Sbjct: 61  -----------------------GPITTMTLRIDGVNKEALTFDYSVIDGDILLGFIESI 97

Query: 118 KVIIKVIPKSE-GSLVKWIWEYEKLQEDGPTPSK---YVDFVTDLTKNIDAHLL 167
           +  + ++P ++ GS+ K    +    +            +  T L K ++A+L+
Sbjct: 98  ENHVVLVPTADGGSICKTTAIFHTKGDAVVPEENIKYANEQNTALFKALEAYLI 151

>d1xdfa1 d.129.3.1 (A:1-157) Plant pathogenesis-related protein PR10 {Yellow lupine (Lupinus luteus) [TaxId: 3873]} Length = 157

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Plant pathogenesis-related protein PR10
species: Yellow lupine (Lupinus luteus) [TaxId: 3873]

 Score = 89.9 bits (223), Expect = 5e-24
 Identities = 26/172 (15%), Positives = 49/172 (28%), Gaps = 32/172 (18%)

Query: 2   ETEVEIKSPADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSAGDFPA 61
           E E        + Y      A  +   +   +  +E  EG+    G++K  T   G    
Sbjct: 6   EDESTSTIAPARLYKALVKDADAIIPKAVEAIQSIETVEGN-GGPGTIKKLTLIEGGETK 64

Query: 62  TRTEEQTQSSHLRGLHYQWSQHFVEKMKEKVE-LDPENKTVAMVVIEGD-LMKHFKSYKV 119
                                     +  K+E +D  N      ++ G  L    +    
Sbjct: 65  Y-------------------------VLHKIEAVDEANLRYNYSIVGGVGLPDTIEKISF 99

Query: 120 IIKVIPKSE-GSLVKWIWEYEKLQEDGPTPSK---YVDFVTDLTKNIDAHLL 167
             K++  +  GS+ K   + E   +  P   +            K I+ +L 
Sbjct: 100 ETKLVEGANGGSIGKVTIKIETKGDAQPNEEEGKAAKARGDAFFKAIENYLS 151

>d1icxa_ d.129.3.1 (A:) Plant pathogenesis-related protein PR10 {Yellow lupine (Lupinus luteus) [TaxId: 3873]} Length = 155

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Plant pathogenesis-related protein PR10
species: Yellow lupine (Lupinus luteus) [TaxId: 3873]

 Score = 84.2 bits (208), Expect = 6e-22
 Identities = 26/171 (15%), Positives = 52/171 (30%), Gaps = 31/171 (18%)

Query: 2   ETEVEIKSPADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSAGDFPA 61
           E E        K Y   +  +  +       +  VE+ EG+    G++K           
Sbjct: 6   ENEQSSTVAPAKLYKALTKDSDEIVPKVIEPIQSVEIVEGN-GGPGTIKKIIAI------ 58

Query: 62  TRTEEQTQSSHLRGLHYQWSQHFVEKMKEKVE-LDPENKTVAMVVIEGD-LMKHFKSYKV 119
                                     +  K++ +D  N T    +I G+ L +  +    
Sbjct: 59  -------------------HDGHTSFVLHKLDAIDEANLTYNYSIIGGEGLDESLEKISY 99

Query: 120 IIKVIPKSE-GSLVKWIWEYEKL--QEDGPTPSKYVDFVTDLTKNIDAHLL 167
             K++P  + GS+ K   ++             +       L K I+ ++L
Sbjct: 100 ESKILPGPDGGSIGKINVKFHTKGDVLSETVRDQAKFKGLGLFKAIEGYVL 150

>d1txca1 d.129.3.1 (A:1-147) Plant pathogenesis-related protein PR10 {Jicama (Pachyrhizus erosus), SPE-16 [TaxId: 109171]} Length = 147

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Plant pathogenesis-related protein PR10
species: Jicama (Pachyrhizus erosus), SPE-16 [TaxId: 109171]

 Score = 73.5 bits (180), Expect = 8e-18
 Identities = 24/152 (15%), Positives = 49/152 (32%), Gaps = 29/152 (19%)

Query: 2   ETEVEIKSPADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSAGDFPA 61
             E        K Y   +  + T+     G +  +E+ EG+    G++K  T + G    
Sbjct: 6   RDETSSSVAPAKLYKALTKDSDTIAQKIDGPIQSIELVEGNGG-VGTIKKITANEG---- 60

Query: 62  TRTEEQTQSSHLRGLHYQWSQHFVEKMKEKVE-LDPENKTVAMVVIEGD-LMKHFKSYKV 119
                                     + +KV+ +D  N      ++ G  L +  +    
Sbjct: 61  ---------------------DKTSFVLQKVDAIDEANLGYDYSIVGGTGLPESLEKLSF 99

Query: 120 IIKVIPKSE-GSLVKWIWEYEKLQEDGPTPSK 150
             KV+  S  GS+ K   ++    +   + + 
Sbjct: 100 ETKVVAGSGGGSISKVTLKFHTKGDAPLSDAV 131

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	172
d1fm4a_	159	Major tree pollen allergen {European white birch (	100.0
d2bk0a1	153	Major allergen api g 1 {Celery (Apium graveolens)	100.0
d1e09a_	159	Major tree pollen allergen {Sweet cherry (Prunus a	100.0
d1icxa_	155	Plant pathogenesis-related protein PR10 {Yellow lu	100.0
d1xdfa1	157	Plant pathogenesis-related protein PR10 {Yellow lu	100.0
d1txca1	147	Plant pathogenesis-related protein PR10 {Jicama (P	100.0
d1vjha_	120	Hypothetical protein At1G24000 {Thale cress (Arabi	99.96
d3cnwa1	138	Uncharacterized protein XoxI {Bacillus cereus [Tax	99.87
d2d4ra1	146	Hypothetical protein TTHA0849 {Thermus thermophilu	99.59
d2rera1	155	Multifunctional enzyme TcmN, cyclase/aromatase dom	99.45
d2b79a1	137	Hypothetical protein SMU440 {Streptococcus mutans	99.29
d2ns9a1	147	Hypothetical protein APE2225 {Aeropyrum pernix [Ta	99.19
d1t17a_	148	Hypothetical protein CC1736 {Caulobacter crescentu	98.89
d2qpva1	133	Uncharacterized protein Atu1531 {Agrobacterium tum	98.86
d2pcsa1	147	Hypothetical protein GKP20 {Geobacillus kaustophil	98.7
d1xuva_	163	Hypothetical protein MM0500 {Methanosarcina mazei	98.66
d1z94a1	143	Hypothetical protein CV1439 {Chromobacterium viola	98.37
d2il5a1	164	Hypothetical protein SA2116 {Staphylococcus aureus	98.24
d1xfsa_	165	Hypothetical protein NE0264 {Nitrosomonas europaea	98.19
d3elia1	143	Uncharacterized protein SPO3351 {Silicibacter pome	97.73
d1xn5a_	138	Hypothetical protein BH1534 {Bacillus halodurans [	97.39
d2nn5a1	160	Hypothetical protein EF2215 {Enterococcus faecalis	97.13
d1xn6a_	143	Hypothetical protein BC4709 {Bacillus cereus [TaxI	96.88
d2k5ga1	183	Uncharacterized protein BPP1335 {Bordetella parape	96.67
d1x53a1	132	Activator of 90 kda heat shock protein ATPase homo	96.58
d1zxfa1	155	Calicheamicin gene cluster protein CalC {Micromono	96.26
d2ffsa1	151	Hypothetical protein PA1206 {Pseudomonas aeruginos	95.96
d1jssa_	199	Cholesterol-regulated Start protein 4 (Stard4). {M	95.83
d1em2a_	214	Lipid transport domain of Mln64 {Human (Homo sapie	95.34
d2psoa1	197	Star-related lipid transfer protein 13 {Human (Hom	88.62
d1ln1a_	203	Phosphatidylcholine transfer protein {Human (Homo	81.55

>d1fm4a_ d.129.3.1 (A:) Major tree pollen allergen {European white birch (Betula pendula), Bet v 1-l [TaxId: 3505]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Major tree pollen allergen
species: European white birch (Betula pendula), Bet v 1-l [TaxId: 3505]

Probab=100.00  E-value=8.3e-42  Score=266.83  Aligned_cols=144  Identities=23%  Similarity=0.383  Sum_probs=132.7

Q ss_pred             ceEEEEcCCHHHHHHHhh-cCCcccCCcCCCCeeeEEEEecccCCCCcEEEEEeecCCCCCcccchhccccccccccccc
Q 038195            2 ETEVEIKSPADKFYNTFS-SKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSAGDFPATRTEEQTQSSHLRGLHYQW   80 (172)
Q Consensus         2 ~~e~~i~apa~kvw~~~~-d~~~~lpk~~P~~v~sve~~eGd~g~~Gsvr~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~   80 (172)
                      +.|+++++||+|+|+++. ++.+++|+++|+++++|+++||| |++||||+|+|..+++                     
T Consensus         6 e~E~~~~v~a~k~~k~~~~d~~~l~pk~~p~~i~~ie~~eGd-g~~GsIr~~~~~~~~~---------------------   63 (159)
T d1fm4a_           6 ETEATSVIPAARMFKAFILDGDKLVPKVAPQAISSVENIEGN-GGPGTIKKINFPEGFP---------------------   63 (159)
T ss_dssp             EEEEEESSCHHHHHHHHTTTHHHHHHHHCTTTCCEEEEEECS-SSTTCEEEEECCTTSS---------------------
T ss_pred             EEEeeccCCHHHHHHHHHhCcccccccccCcceEEEEEECCC-CCCCCEEEEEecCCCC---------------------
Confidence            578889999999999975 55447899999999999999999 6899999999999988                     


Q ss_pred             ccceeeeeEEEEE-ecCCCceEEEEEEeCc-cccceeEEEEEEEEEecCCC-cEEEEEEEEEecCCCCCChhhh---hHH
Q 038195           81 SQHFVEKMKEKVE-LDPENKTVAMVVIEGD-LMKHFKSYKVIIKVIPKSEG-SLVKWIWEYEKLQEDGPTPSKY---VDF  154 (172)
Q Consensus        81 ~~~~~~~~kEri~-~D~~~~~i~Y~vieGd-l~~~~~s~~~t~~v~p~~dG-s~v~w~~~ye~~~~~~~~p~~~---~~~  154 (172)
                          .+++|||++ +|+++|+++|++|||| |++.|++|+++++|+|+++| |+++|+++|+++++..++|+.+   ++.
T Consensus        64 ----~~~~Kerve~iD~~~~~~~y~viEGd~l~~~~~s~~~~~k~~~~~~gg~v~kwt~eYe~~~~~~~~~e~~k~~ke~  139 (159)
T d1fm4a_          64 ----FKYVKDRVDEVDHTNFKYNYSVIEGGPVGDTLEKISNEIKIVATPDGGCVLKISNKYHTKGNHEVKAEQVKASKEM  139 (159)
T ss_dssp             ----SSEEEEEEEEEETTTTEEEEEEEEBTTBTTTEEEEEEEEEEEECTTSCEEEEEEEEEEESTTCCCCTTTTHHHHHH
T ss_pred             ----ceEEEEEEEEEcccccEEEEEEEeccccccceEEEEEEEEEecCCCCceEEEEEEEEEECCCCCCCHHHHHHHHHH
Confidence                778999999 9999999999999999 67789999999999999887 9999999999999998888775   578


Q ss_pred             HHHHHHHHHHHHhhccC
Q 038195          155 VTDLTKNIDAHLLKEEQ  171 (172)
Q Consensus       155 ~~~~~k~ie~ylla~~~  171 (172)
                      +.+|+|+||+||+|||.
T Consensus       140 ~~~~~K~iE~YLlanp~  156 (159)
T d1fm4a_         140 GETLLRAVESYLLAHSD  156 (159)
T ss_dssp             HHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHhhChh
Confidence            99999999999999996

>d2bk0a1 d.129.3.1 (A:2-154) Major allergen api g 1 {Celery (Apium graveolens) [TaxId: 4045]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Major allergen api g 1
species: Celery (Apium graveolens) [TaxId: 4045]

Probab=100.00  E-value=7.1e-42  Score=265.99  Aligned_cols=141  Identities=23%  Similarity=0.381  Sum_probs=130.1

Q ss_pred             ceEEEEcCCHHHHHHHhh-cCCcccCCcCCCCeeeEEEEecccCCCCcEEEEEeecCCCCCcccchhccccccccccccc
Q 038195            2 ETEVEIKSPADKFYNTFS-SKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSAGDFPATRTEEQTQSSHLRGLHYQW   80 (172)
Q Consensus         2 ~~e~~i~apa~kvw~~~~-d~~~~lpk~~P~~v~sve~~eGd~g~~Gsvr~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~   80 (172)
                      +.|+++++||+|+|++|. +..+++||++|++|++|+ +||| |++||||.|+|.++++                     
T Consensus         6 e~E~~~~v~a~k~~ka~~~d~~~l~Pk~~P~~i~sve-veGd-G~~GsIr~~~~~~~~~---------------------   62 (153)
T d2bk0a1           6 VLELTSSVSAEKIFQGFVIDVDTVLPKAAPGAYKSVE-IKGD-GGPGTLKIITLPDGGP---------------------   62 (153)
T ss_dssp             EEEEEESSCHHHHHHHHTTSHHHHHHHHCGGGCSEEE-EESS-SSTTCEEEEECCTTSS---------------------
T ss_pred             EEEEeccCCHHHHHHHHhhcccccccccccceeeEEE-EECC-CCCCeEEEEEEecCcc---------------------
Confidence            679999999999999986 443378999999999999 5999 7999999999999988                     


Q ss_pred             ccceeeeeEEEEE-ecCCCceEEEEEEeCc-cccceeEEEEEEEEEecCCC-cEEEEEEEEEecCCCCCChhhhh---HH
Q 038195           81 SQHFVEKMKEKVE-LDPENKTVAMVVIEGD-LMKHFKSYKVIIKVIPKSEG-SLVKWIWEYEKLQEDGPTPSKYV---DF  154 (172)
Q Consensus        81 ~~~~~~~~kEri~-~D~~~~~i~Y~vieGd-l~~~~~s~~~t~~v~p~~dG-s~v~w~~~ye~~~~~~~~p~~~~---~~  154 (172)
                          ++++|||++ +|++|++|+|++|||| |++.|++|+.+++++|.++| |+|+|+++|+++++..++|+.++   +.
T Consensus        63 ----~~~~Kerve~iD~~~~~~~y~viEGd~l~~~y~s~~~~~~~~~~~~ggsv~k~t~eYe~~~~~~~~~e~~k~~~e~  138 (153)
T d2bk0a1          63 ----ITTMTLRIDGVNKEALTFDYSVIDGDILLGFIESIENHVVLVPTADGGSICKTTAIFHTKGDAVVPEENIKYANEQ  138 (153)
T ss_dssp             ----CCEEEEEEEEEETTTTEEEEEEEESGGGTTTEEEEEEEEEEEECTTSCEEEEEEEEEEESTTCCCCHHHHHHHHHH
T ss_pred             ----ceeeEEEEEEEecCccEEEEEEEecccccccEEEEEEEEEEecCCCCCeEEEEEEEEEECCCCCCCHHHHHHHHHH
Confidence                788999999 9999999999999999 67889999999999999986 99999999999999999998864   57


Q ss_pred             HHHHHHHHHHHHhhc
Q 038195          155 VTDLTKNIDAHLLKE  169 (172)
Q Consensus       155 ~~~~~k~ie~ylla~  169 (172)
                      +.+|+|+||+||+||
T Consensus       139 ~~~~~K~iE~YLlan  153 (153)
T d2bk0a1         139 NTALFKALEAYLIAN  153 (153)
T ss_dssp             HHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHhcC
Confidence            999999999999997

>d1e09a_ d.129.3.1 (A:) Major tree pollen allergen {Sweet cherry (Prunus avium), pru av 1 [TaxId: 42229]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Major tree pollen allergen
species: Sweet cherry (Prunus avium), pru av 1 [TaxId: 42229]

Probab=100.00  E-value=1.1e-41  Score=266.30  Aligned_cols=144  Identities=24%  Similarity=0.398  Sum_probs=132.4

Q ss_pred             ceEEEEcCCHHHHHHHhh-cCCcccCCcCCCCeeeEEEEecccCCCCcEEEEEeecCCCCCcccchhccccccccccccc
Q 038195            2 ETEVEIKSPADKFYNTFS-SKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSAGDFPATRTEEQTQSSHLRGLHYQW   80 (172)
Q Consensus         2 ~~e~~i~apa~kvw~~~~-d~~~~lpk~~P~~v~sve~~eGd~g~~Gsvr~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~   80 (172)
                      +.|+++++||+|+|+++. ++.+++||++|+.+++|++++|| |++||||.|+|.+|++                     
T Consensus         6 ~~E~~~~vpa~k~~k~~~~d~~~l~pk~~p~~i~~ie~~eGd-g~~GsIr~~~~~~~~~---------------------   63 (159)
T d1e09a_           6 ESEFTSEIPPPRLFKAFVLDADNLVPKIAPQAIKHSEILEGD-GGPGTIKKITFGEGSQ---------------------   63 (159)
T ss_dssp             EEEEEESSCHHHHHHHHTTTHHHHHHHHCTTTEEEEEEEESS-SSTTCEEEEEECCSSS---------------------
T ss_pred             EEEEeecCCHHHHHHHHhcChhhcCcccCCcceeEEEEEcCC-CCcCcEEEEEEcCCCC---------------------
Confidence            678899999999999975 55447899999999999999999 5899999999999988                     


Q ss_pred             ccceeeeeEEEEE-ecCCCceEEEEEEeCc-cccceeEEEEEEEEEecCCC-cEEEEEEEEEecCCCCCChhhh---hHH
Q 038195           81 SQHFVEKMKEKVE-LDPENKTVAMVVIEGD-LMKHFKSYKVIIKVIPKSEG-SLVKWIWEYEKLQEDGPTPSKY---VDF  154 (172)
Q Consensus        81 ~~~~~~~~kEri~-~D~~~~~i~Y~vieGd-l~~~~~s~~~t~~v~p~~dG-s~v~w~~~ye~~~~~~~~p~~~---~~~  154 (172)
                          +.++||||+ +|+++|+++|++|||| +++.|++|+.++++.|.++| |+++|+++|+++++..++|+.+   +++
T Consensus        64 ----~~~~KErie~iD~~~~~~~y~viEGd~l~~~~~s~~~~~~~~~~~~~g~vvkwt~eYe~~~~~~~~~e~~~~~~e~  139 (159)
T d1e09a_          64 ----YGYVKHKIDSIDKENYSYSYTLIEGDALGDTLEKISYETKLVASPSGGSIIKSTSHYHTKGNVEIKEEHVKAGKEK  139 (159)
T ss_dssp             ----CEEEEEEEEEEETTTTEEEEEECCCTTTGGGEEEEEEEEEECCCTTSSEEEEEEEEEEECSSCCCCHHHHHHHHHH
T ss_pred             ----cEEEEEEEEEEcccccEEEEEEEecccccccEEEEEEEEEEccCCCCCcEEEEEEEEEECCCCCCCHHHHHHHHHH
Confidence                788999999 9999999999999999 55689999999999998876 9999999999999999988875   468


Q ss_pred             HHHHHHHHHHHHhhccC
Q 038195          155 VTDLTKNIDAHLLKEEQ  171 (172)
Q Consensus       155 ~~~~~k~ie~ylla~~~  171 (172)
                      +..|+|+||+||+|||.
T Consensus       140 ~~~~~K~iEayLlanp~  156 (159)
T d1e09a_         140 ASNLFKLIETYLKGHPD  156 (159)
T ss_dssp             HHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHhhChh
Confidence            99999999999999996

>d1icxa_ d.129.3.1 (A:) Plant pathogenesis-related protein PR10 {Yellow lupine (Lupinus luteus) [TaxId: 3873]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Plant pathogenesis-related protein PR10
species: Yellow lupine (Lupinus luteus) [TaxId: 3873]

Probab=100.00  E-value=5.1e-41  Score=261.76  Aligned_cols=143  Identities=20%  Similarity=0.270  Sum_probs=128.9

Q ss_pred             ceEEEEcCCHHHHHHHhhcCCc-ccCCcCCCCeeeEEEEecccCCCCcEEEEEeecCCCCCcccchhccccccccccccc
Q 038195            2 ETEVEIKSPADKFYNTFSSKAH-TVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSAGDFPATRTEEQTQSSHLRGLHYQW   80 (172)
Q Consensus         2 ~~e~~i~apa~kvw~~~~d~~~-~lpk~~P~~v~sve~~eGd~g~~Gsvr~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~   80 (172)
                      +.|+++++||+|+|+++....+ ++||++|+ |++|+++||| |++||||.|+|.+|++                     
T Consensus         6 ~~E~~~~v~a~klfka~~~d~~~l~pk~~~~-i~s~e~~eGd-Gg~GsIk~~~~~~~~~---------------------   62 (155)
T d1icxa_           6 ENEQSSTVAPAKLYKALTKDSDEIVPKVIEP-IQSVEIVEGN-GGPGTIKKIIAIHDGH---------------------   62 (155)
T ss_dssp             EEEEEESSCHHHHHHHHTTTHHHHHHHHSTT-EEEEEEEESS-SSTTCEEEEEEESSSS---------------------
T ss_pred             EEeEEecCCHHHHhhhheeccchhchhhhhh-eeeeeEecCC-CccceEEEEEeccCCc---------------------
Confidence            6788999999999999764434 77999996 9999999999 7999999999999998                     


Q ss_pred             ccceeeeeEEEEE-ecCCCceEEEEEEeCc-cccceeEEEEEEEEEecCCC-cEEEEEEEEEecCCCCCChhh--hhHHH
Q 038195           81 SQHFVEKMKEKVE-LDPENKTVAMVVIEGD-LMKHFKSYKVIIKVIPKSEG-SLVKWIWEYEKLQEDGPTPSK--YVDFV  155 (172)
Q Consensus        81 ~~~~~~~~kEri~-~D~~~~~i~Y~vieGd-l~~~~~s~~~t~~v~p~~dG-s~v~w~~~ye~~~~~~~~p~~--~~~~~  155 (172)
                          .+++|||++ +|++|++++|++|||| |++.|++|+.++++.|.++| |+++|+++|+++++..++++.  +++.+
T Consensus        63 ----~~~~Kerie~iD~en~~~~y~viEGd~l~~~~~~~~~~~k~~~~~~~g~i~k~t~eYe~~g~~~~e~~~~~~ke~~  138 (155)
T d1icxa_          63 ----TSFVLHKLDAIDEANLTYNYSIIGGEGLDESLEKISYESKILPGPDGGSIGKINVKFHTKGDVLSETVRDQAKFKG  138 (155)
T ss_dssp             ----EEEEEEEEEEEEGGGTEEEEEEEEETTSCTTEEEEEEEEEEEECGGGCEEEEEEEEEEESSSSCCHHHHTTHHHHH
T ss_pred             ----eEEEEEEEEEEcccccEEEEEEEecccccccEEEEEEEEEEecCCCCCeEEEEEEEEEECCCCCChhhHHHHHHHH
Confidence                889999999 9999999999999999 56789999999999999885 999999999999886553332  67899


Q ss_pred             HHHHHHHHHHHhhccC
Q 038195          156 TDLTKNIDAHLLKEEQ  171 (172)
Q Consensus       156 ~~~~k~ie~ylla~~~  171 (172)
                      .+|||+||+||+|||.
T Consensus       139 ~~~fK~iE~YLlanPd  154 (155)
T d1icxa_         139 LGLFKAIEGYVLAHPD  154 (155)
T ss_dssp             HHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHhhCcC
Confidence            9999999999999996

>d1xdfa1 d.129.3.1 (A:1-157) Plant pathogenesis-related protein PR10 {Yellow lupine (Lupinus luteus) [TaxId: 3873]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Plant pathogenesis-related protein PR10
species: Yellow lupine (Lupinus luteus) [TaxId: 3873]

Probab=100.00  E-value=4.1e-41  Score=262.82  Aligned_cols=143  Identities=19%  Similarity=0.269  Sum_probs=130.5

Q ss_pred             ceEEEEcCCHHHHHHHhhcCCc-ccCCcCCCCeeeEEEEecccCCCCcEEEEEeecCCCCCcccchhccccccccccccc
Q 038195            2 ETEVEIKSPADKFYNTFSSKAH-TVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSAGDFPATRTEEQTQSSHLRGLHYQW   80 (172)
Q Consensus         2 ~~e~~i~apa~kvw~~~~d~~~-~lpk~~P~~v~sve~~eGd~g~~Gsvr~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~   80 (172)
                      +.|+++++||+|+|+++....+ ++|++ |+.|+||+++||| |++||||.|+|..|++                     
T Consensus         6 ~~E~~~~v~a~k~fka~~~d~~~l~pk~-p~~i~s~e~~eGd-G~~GsIr~~~~~~g~~---------------------   62 (157)
T d1xdfa1           6 EDESTSTIAPARLYKALVKDADAIIPKA-VEAIQSIETVEGN-GGPGTIKKLTLIEGGE---------------------   62 (157)
T ss_dssp             EEEEEESSCHHHHHHHHHHSHHHHHHHH-CTTEEEEEEEESS-SSTTCEEEEEEEETTE---------------------
T ss_pred             EEEEeccCCHHHHHHHHhhchhhccccc-hhheecceeecCC-CCCCcEEEEEEcCCCc---------------------
Confidence            6789999999999998864445 66887 6689999999999 7999999999999998                     


Q ss_pred             ccceeeeeEEEEE-ecCCCceEEEEEEeCc-cccceeEEEEEEEEEecCCC-cEEEEEEEEEecCCCCCChhhh---hHH
Q 038195           81 SQHFVEKMKEKVE-LDPENKTVAMVVIEGD-LMKHFKSYKVIIKVIPKSEG-SLVKWIWEYEKLQEDGPTPSKY---VDF  154 (172)
Q Consensus        81 ~~~~~~~~kEri~-~D~~~~~i~Y~vieGd-l~~~~~s~~~t~~v~p~~dG-s~v~w~~~ye~~~~~~~~p~~~---~~~  154 (172)
                          .+++|||++ +|++|++++|++|||| |++.|++|+++++++|.++| |+++|+++|+++++..++|+.+   ++.
T Consensus        63 ----~~~~Kerie~vD~e~~~~~y~viEGd~l~~~~~s~~~~~k~~~~~~ggsv~k~t~eYe~~~~~~~~~e~ik~~~e~  138 (157)
T d1xdfa1          63 ----TKYVLHKIEAVDEANLRYNYSIVGGVGLPDTIEKISFETKLVEGANGGSIGKVTIKIETKGDAQPNEEEGKAAKAR  138 (157)
T ss_dssp             ----EEEEEEEEEEEEGGGTEEEEEEESSTTSCTTEEEEEEEEEEEECTTSSEEEEEEEEEEESSSSCCCHHHHHHHHHH
T ss_pred             ----cEEEEEEEEEEechhcEEEEEEEecccccccEEEEEEEEEEEcCCCCceEEEEEEEEEECCCCCCCHHHHHHHHHH
Confidence                788999999 9999999999999999 67889999999999999886 9999999999999999998875   567


Q ss_pred             HHHHHHHHHHHHhhccC
Q 038195          155 VTDLTKNIDAHLLKEEQ  171 (172)
Q Consensus       155 ~~~~~k~ie~ylla~~~  171 (172)
                      +.+|+|+||+||+|||.
T Consensus       139 ~~~~~K~iEaYLlanpd  155 (157)
T d1xdfa1         139 GDAFFKAIENYLSAHPE  155 (157)
T ss_dssp             HHTTTHHHHHHHHTSGG
T ss_pred             HHHHHHHHHHHHhhCCC
Confidence            89999999999999994

>d1txca1 d.129.3.1 (A:1-147) Plant pathogenesis-related protein PR10 {Jicama (Pachyrhizus erosus), SPE-16 [TaxId: 109171]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Plant pathogenesis-related protein PR10
species: Jicama (Pachyrhizus erosus), SPE-16 [TaxId: 109171]

Probab=100.00  E-value=1.4e-36  Score=234.25  Aligned_cols=136  Identities=20%  Similarity=0.310  Sum_probs=123.6

Q ss_pred             ceEEEEcCCHHHHHHHhhcCCcccCCcCCCCeeeEEEEecccCCCCcEEEEEeecCCCCCcccchhcccccccccccccc
Q 038195            2 ETEVEIKSPADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSAGDFPATRTEEQTQSSHLRGLHYQWS   81 (172)
Q Consensus         2 ~~e~~i~apa~kvw~~~~d~~~~lpk~~P~~v~sve~~eGd~g~~Gsvr~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~   81 (172)
                      +.|+++++||+|+|+++..+.++||+++|+.|++|++++|| |++||||.|+|.+|++                      
T Consensus         6 ~~E~~~~v~a~k~~ka~~~d~~~l~~~~p~~i~s~e~~eGd-g~~GsIr~~~~~~g~~----------------------   62 (147)
T d1txca1           6 RDETSSSVAPAKLYKALTKDSDTIAQKIDGPIQSIELVEGN-GGVGTIKKITANEGDK----------------------   62 (147)
T ss_dssp             EEEEEESSCHHHHHHHHHTTHHHHHHHTTSSEEEEEEEESS-SSTTCEEEEEEEETTE----------------------
T ss_pred             EEEEeccCCHHHHHHhhhcccccCccccccccccceeecCC-CCcceEEEEEEcCCCc----------------------
Confidence            67899999999999877755578888999999999999999 6899999999999987                      


Q ss_pred             cceeeeeEEEEE-ecCCCceEEEEEEeCc-cccceeEEEEEEEEEecCCC-cEEEEEEEEEecCCCCCChhhh---hHHH
Q 038195           82 QHFVEKMKEKVE-LDPENKTVAMVVIEGD-LMKHFKSYKVIIKVIPKSEG-SLVKWIWEYEKLQEDGPTPSKY---VDFV  155 (172)
Q Consensus        82 ~~~~~~~kEri~-~D~~~~~i~Y~vieGd-l~~~~~s~~~t~~v~p~~dG-s~v~w~~~ye~~~~~~~~p~~~---~~~~  155 (172)
                         .+++||||+ +|+++|+|+|++|||| |+..|++|++++++.|.++| |+|+|+++|+++++..++++.+   ++.+
T Consensus        63 ---~~~~kErl~~iD~~~~~~~y~iiEGd~l~~~~~s~~~~~~~~~~~~ggs~vkw~~~y~~~~~~~~~ee~~k~~k~~~  139 (147)
T d1txca1          63 ---TSFVLQKVDAIDEANLGYDYSIVGGTGLPESLEKLSFETKVVAGSGGGSISKVTLKFHTKGDAPLSDAVRDDALAKG  139 (147)
T ss_dssp             ---EEEEEEEEEEEEGGGTEEEEEEEESTTSCTTEEEEEEEEEEEECSTTCEEEEEEEEEEETTSCCCCHHHHHHHHHHH
T ss_pred             ---ceEEEEEEEEEccCCcEEEEEEEccCccccceEEEEEEEEEecCCCCCcEEEEEEEEEECCCCCCCHHHHHHHHHHH
Confidence               788999999 9999999999999999 56789999999999999886 9999999999999888877775   5678


Q ss_pred             HHHHHHHH
Q 038195          156 TDLTKNID  163 (172)
Q Consensus       156 ~~~~k~ie  163 (172)
                      .+|||+||
T Consensus       140 ~~~~KavE  147 (147)
T d1txca1         140 AGFFKAIE  147 (147)
T ss_dssp             HHHHHHHH
T ss_pred             hhhheecC
Confidence            99999987

>d1vjha_ d.129.3.1 (A:) Hypothetical protein At1G24000 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Hypothetical protein At1G24000
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.96  E-value=4.9e-30  Score=191.86  Aligned_cols=110  Identities=28%  Similarity=0.507  Sum_probs=98.8

Q ss_pred             CceEEEEcCCHHHHHHHhhcCCcccCCcCCCCeeeEEEEecccCCCCcEEEEEeecCCCCCcccchhccccccccccccc
Q 038195            1 METEVEIKSPADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSAGDFPATRTEEQTQSSHLRGLHYQW   80 (172)
Q Consensus         1 ~~~e~~i~apa~kvw~~~~d~~~~lpk~~P~~v~sve~~eGd~g~~Gsvr~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~   80 (172)
                      |+++++|++||++||.++.+.                 ++|+|                                     
T Consensus         7 l~~eveik~~a~kf~~~~~~~-----------------~~~~~-------------------------------------   32 (120)
T d1vjha_           7 LSVKFDVKCPADKFFSAFVED-----------------TNRPF-------------------------------------   32 (120)
T ss_dssp             EEEEEEESSCHHHHHHHHHHH-----------------TTSCS-------------------------------------
T ss_pred             EEEEEEecCCHHHHHHHhhhc-----------------cCCCC-------------------------------------
Confidence            579999999999999999632                 12332                                     


Q ss_pred             ccceeeeeEEEEE-ecCCCceEEEEEEeCccccceeEEEEEEEEEecCC--CcEEEEEEEEEecCCCCCChhhhhHHHHH
Q 038195           81 SQHFVEKMKEKVE-LDPENKTVAMVVIEGDLMKHFKSYKVIIKVIPKSE--GSLVKWIWEYEKLQEDGPTPSKYVDFVTD  157 (172)
Q Consensus        81 ~~~~~~~~kEri~-~D~~~~~i~Y~vieGdl~~~~~s~~~t~~v~p~~d--Gs~v~w~~~ye~~~~~~~~p~~~~~~~~~  157 (172)
                          .+..||||+ +|++|++|+|++||||+++.|++|+++++|+|+++  ||+|+|+++|++.+++.|+|+.+++++..
T Consensus        33 ----~~~~KerVe~vD~en~sity~vieGdvl~~yksf~~~i~~~p~~~g~gsi~kwt~eYek~~~~~p~p~~~~e~~~~  108 (120)
T d1vjha_          33 ----EKNGKTEIEAVDLVKKTMTIQMSGSEIQKYFKTLKGSIAVTPIGVGDGSHVVWTFHFEKVHKDIDDPHSIIDESVK  108 (120)
T ss_dssp             ----STTCEEEEEEEETTTTEEEEEEECTTGGGTEEEEEEEEEEEECSSSSCEEEEEEEEEEESSTTSCCSHHHHHHHHH
T ss_pred             ----CcccEEEEEEEcCCCCEEEEEEEeeccccceeEEEEEEEEEecCCCCceEEEEEEEEEeCCCCCCCHHHHHHHHHH
Confidence                223689999 99999999999999999899999999999999976  59999999999999999999999999999


Q ss_pred             HHHHHHHHHhh
Q 038195          158 LTKNIDAHLLK  168 (172)
Q Consensus       158 ~~k~ie~ylla  168 (172)
                      ++|+||+|||+
T Consensus       109 ~~K~id~yLL~  119 (120)
T d1vjha_         109 YFKKLDEAILN  119 (120)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHhc
Confidence            99999999996

>d3cnwa1 d.129.3.8 (A:3-140) Uncharacterized protein XoxI {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Atu1531-like
domain: Uncharacterized protein XoxI
species: Bacillus cereus [TaxId: 1396]

Probab=99.87  E-value=2.2e-21  Score=144.31  Aligned_cols=125  Identities=18%  Similarity=0.354  Sum_probs=101.7

Q ss_pred             ceEEEEcCCHHHHHHHhhcCCcccCCcCCCCeeeEEEEecccCCCCcEEEEEeecCCCCCcccchhcccccccccccccc
Q 038195            2 ETEVEIKSPADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSAGDFPATRTEEQTQSSHLRGLHYQWS   81 (172)
Q Consensus         2 ~~e~~i~apa~kvw~~~~d~~~~lpk~~P~~v~sve~~eGd~g~~Gsvr~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~   81 (172)
                      +.+++|+|||++||++++|+. .+|+|+|. +.+|+..+ +    |++|.+++..|+.                      
T Consensus         5 ~~si~I~A~pe~VW~~v~df~-~~~~W~p~-v~~~~~~~-~----G~~R~~~~~~g~~----------------------   55 (138)
T d3cnwa1           5 TTSMEIFGSPEQVWQLIGGFN-SLPDWLPY-IPSSKLTE-G----GRVRHLANPDGDT----------------------   55 (138)
T ss_dssp             EEEEEESSCHHHHHHHHCCTT-CGGGTCTT-CSEEEEEG-G----GTEEEEECTTCCE----------------------
T ss_pred             EEEEEEeCCHHHHHHHHhCcc-chHHHhcc-cceeEeec-C----ceeEEEEecCCce----------------------
Confidence            578999999999999999996 78999996 89998642 2    8999999866544                      


Q ss_pred             cceeeeeEEEEE-ecCCCceEEEEEEeCccccceeEEEEEEEEEecCCC--cEEEEEEEEEecCCCCCChhhhhH----H
Q 038195           82 QHFVEKMKEKVE-LDPENKTVAMVVIEGDLMKHFKSYKVIIKVIPKSEG--SLVKWIWEYEKLQEDGPTPSKYVD----F  154 (172)
Q Consensus        82 ~~~~~~~kEri~-~D~~~~~i~Y~vieGdl~~~~~s~~~t~~v~p~~dG--s~v~w~~~ye~~~~~~~~p~~~~~----~  154 (172)
                            +.|+++ +|+.+++++|++++|+++  +.+|.++++|.|.++|  |.|+|+.+|.+.+   .+++.+.+    .
T Consensus        56 ------~~E~l~~~d~~~~~~~y~~~~~~~p--~~~~~~~~~l~p~~~g~~t~v~w~~~f~p~~---~~~~~~~~~~~~~  124 (138)
T d3cnwa1          56 ------IIERLEVFNDKERYYTYSIMNAPFP--VTNYLSTIQVKEGTESNTSLVEWSGTFTPVE---VSDEEAINLFHGI  124 (138)
T ss_dssp             ------EEEEEEEEETTTTEEEEEEEECSSS--EEEEEEEEEEEECSSTTCEEEEEEEEEEESS---SCHHHHHHHHHHH
T ss_pred             ------eEEEEEEEeCCCcEEEEEEecCCCc--ceeeEEEEEEEECCCCCeEEEEEEEEEecCC---CCHHHHHHHHHHH
Confidence                  789999 999999999999999874  7999999999998764  9999999999865   34555444    3


Q ss_pred             HHHHHHHHHHHH
Q 038195          155 VTDLTKNIDAHL  166 (172)
Q Consensus       155 ~~~~~k~ie~yl  166 (172)
                      +...++.|++.+
T Consensus       125 ~~~~l~~L~~~f  136 (138)
T d3cnwa1         125 YSDGLKALQQAF  136 (138)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhh
Confidence            444556666554

>d2d4ra1 d.129.3.6 (A:2-147) Hypothetical protein TTHA0849 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: oligoketide cyclase/dehydrase-like
domain: Hypothetical protein TTHA0849
species: Thermus thermophilus [TaxId: 274]

Probab=99.59  E-value=5.7e-14  Score=102.51  Aligned_cols=136  Identities=21%  Similarity=0.221  Sum_probs=99.8

Q ss_pred             CceEEEEcCCHHHHHHHhhcCCcccCCcCCCCeeeEEEEecccCCCCcEEEEEeecCCCCCcccchhccccccccccccc
Q 038195            1 METEVEIKSPADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSAGDFPATRTEEQTQSSHLRGLHYQW   80 (172)
Q Consensus         1 ~~~e~~i~apa~kvw~~~~d~~~~lpk~~P~~v~sve~~eGd~g~~Gsvr~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~   80 (172)
                      ++.++.|+||++++|+++.|.. .+|+|+|. +++++++++++  .+....+++...+.                     
T Consensus         3 v~~~~~I~ap~~~V~~~l~D~~-~~~~w~p~-~~~~~il~~~~--~~~~~~~~~~~~~~---------------------   57 (146)
T d2d4ra1           3 VRAERYIPAPPERVYRLAKDLE-GLKPYLKE-VESLEVVAREG--ARTRSRWVAVAMGK---------------------   57 (146)
T ss_dssp             EEEEEEESSCHHHHHHHHHCHH-HHGGGCTT-EEEEEEEEEET--TEEEEEEEEEETTE---------------------
T ss_pred             EEEEEEECCCHHHHHHHHHChh-hHHhhccc-cEEEEEEEecC--CcceEEEEEEeeee---------------------
Confidence            4678999999999999999995 78999996 99999987762  34444555554443                     


Q ss_pred             ccceeeeeEEEEEecCCCceEEEEEEeCccccceeEEEEEEEEEecCCCcEEEEEEEEEecCCCC-CChhh-----hhHH
Q 038195           81 SQHFVEKMKEKVELDPENKTVAMVVIEGDLMKHFKSYKVIIKVIPKSEGSLVKWIWEYEKLQEDG-PTPSK-----YVDF  154 (172)
Q Consensus        81 ~~~~~~~~kEri~~D~~~~~i~Y~vieGdl~~~~~s~~~t~~v~p~~dGs~v~w~~~ye~~~~~~-~~p~~-----~~~~  154 (172)
                          ......++..++.+..+.|++..|++    ..|.++++++|.++||.+.|+++|+...+.. .-...     +.+.
T Consensus        58 ----~~~~~~~~~~~~~~~~i~~~~~~g~~----~~~~g~w~l~~~~~gT~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (146)
T d2d4ra1          58 ----KVRWLEEEEWDDENLRNRFFSPEGDF----DRYEGTWVFLPEGEGTRVVLTLTYELTIPIFGGLLRKLVQKLMQEN  129 (146)
T ss_dssp             ----EEEEEEEEEEETTTTEEEEEEEEESC----SEEEEEEEEEECSSSEEEEEEEEEECCCTTTTTTTHHHHHHHHHHH
T ss_pred             ----eEEEEEEEEEcCCCCEEEEEEccCCc----ceEEEEEEEEecCCceEEEEEEEEEEcCccHHHHHHHHHHHHHHHH
Confidence                22345566678899999999999875    5688999999999999999999998764321 11221     2235


Q ss_pred             HHHHHHHHHHHHhhc
Q 038195          155 VTDLTKNIDAHLLKE  169 (172)
Q Consensus       155 ~~~~~k~ie~ylla~  169 (172)
                      +..+++.|.+.+.+.
T Consensus       130 ~~~~l~~l~~~~~~~  144 (146)
T d2d4ra1         130 VESLLKGLEERVLAA  144 (146)
T ss_dssp             HHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhh
Confidence            566666666666553

>d2rera1 d.129.3.6 (A:1-155) Multifunctional enzyme TcmN, cyclase/aromatase domain {Streptomyces glaucescens [TaxId: 1907]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: oligoketide cyclase/dehydrase-like
domain: Multifunctional enzyme TcmN, cyclase/aromatase domain
species: Streptomyces glaucescens [TaxId: 1907]

Probab=99.45  E-value=1.4e-12  Score=95.46  Aligned_cols=113  Identities=12%  Similarity=0.144  Sum_probs=83.7

Q ss_pred             ceEEEEcCCHHHHHHHhhcCCcccCCcCCCCeeeEEEEecccCCCCcEEEEEeecCCCCCcccchhcccccccccccccc
Q 038195            2 ETEVEIKSPADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSAGDFPATRTEEQTQSSHLRGLHYQWS   81 (172)
Q Consensus         2 ~~e~~i~apa~kvw~~~~d~~~~lpk~~P~~v~sve~~eGd~g~~Gsvr~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~   81 (172)
                      +.++.|+||+++||+++.|.. .+|+|+|. +.+++++++++  .|....+.+..+...                     
T Consensus         6 e~si~I~Ap~~~Vw~~l~D~~-~~~~w~p~-~~~~~~~~~~~--~~~~~~~~~~~~~~~---------------------   60 (155)
T d2rera1           6 DNSIVVNAPFELVWDVTNDIE-AWPELFSE-YAEAEILRQDG--DGFDFRLKTRPDANG---------------------   60 (155)
T ss_dssp             EEEEEESSCHHHHHHHHTCGG-GHHHHCSS-EEEEEEEECCS--SCEEEEEEECCCTTS---------------------
T ss_pred             EEEEEECCCHHHHHHHHHChh-hHhhhhhh-ceEEEEeecCC--CceEEEEEEEEeeee---------------------
Confidence            678999999999999999995 78999996 88999887653  333334433322210                     


Q ss_pred             cceeeeeEEEEEecCCCceEEEEEEeCccccceeEEEEEEEEEecCCCcEEEEEEEEEecCCC
Q 038195           82 QHFVEKMKEKVELDPENKTVAMVVIEGDLMKHFKSYKVIIKVIPKSEGSLVKWIWEYEKLQED  144 (172)
Q Consensus        82 ~~~~~~~kEri~~D~~~~~i~Y~vieGdl~~~~~s~~~t~~v~p~~dGs~v~w~~~ye~~~~~  144 (172)
                        .......+++.++..+.+.|....++.   ...+..++.|+|.++||.|+|+.+|+..+..
T Consensus        61 --~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~w~~~~~~~gT~v~~~~~~~~~~~~  118 (155)
T d2rera1          61 --RVWEWVSHRVPDKGSRTVRAHRVETGP---FAYMNLHWTYRAVAGGTEMRWVQEFDMKPGA  118 (155)
T ss_dssp             --CCCEEEEEEEEEGGGTEEEEEESSCTT---EEEEEEEEEEEEETTEEEEEEEEEEEECTTC
T ss_pred             --eeEEEEEEEEEcCCccEEEEEeecCcc---ceeeEEEEEEeecCCccEEEEEEEEEECCCc
Confidence              022334555578888888888755443   4778899999999999999999999988764

>d2b79a1 d.129.3.9 (A:1-137) Hypothetical protein SMU440 {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Smu440-like
domain: Hypothetical protein SMU440
species: Streptococcus mutans [TaxId: 1309]

Probab=99.29  E-value=9.1e-11  Score=84.14  Aligned_cols=102  Identities=8%  Similarity=0.084  Sum_probs=77.5

Q ss_pred             CceEEEEcCCHHHHHHHhhcCCcccCCcCCCCeeeEEEEecccCCCCcEEEEEeecCCCCCcccchhccccccccccccc
Q 038195            1 METEVEIKSPADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSAGDFPATRTEEQTQSSHLRGLHYQW   80 (172)
Q Consensus         1 ~~~e~~i~apa~kvw~~~~d~~~~lpk~~P~~v~sve~~eGd~g~~Gsvr~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~   80 (172)
                      ++.++.|+||+++||+++.|.. .+|+|+|. +++++. .|+ .++|+...+++..++.                     
T Consensus         3 ~s~si~I~Ap~e~Vw~~~~d~~-~~~~W~~~-~~~~~~-~~~-~~~G~~~~~~~~~~~~---------------------   57 (137)
T d2b79a1           3 FSFELAVNTKKEDAWTYYSQVN-QWFVWEGD-LEQISL-EGE-FTTGQKGKMKMEDMPE---------------------   57 (137)
T ss_dssp             EEEEEEESSCHHHHHHHHHCGG-GGGGTSTT-EEEEEE-SSS-SSTTCEEEEEETTSCC---------------------
T ss_pred             eEEEEEEcCCHHHHHHHHhhhh-hCccccCc-ccceee-ccc-ccceEEEEEEEcCCcc---------------------
Confidence            3578999999999999999984 79999996 899985 555 3789998888754433                     


Q ss_pred             ccceeeeeEEEEE-ecCCCceEEEEEEeCccccceeEEEEEEEEEecCCC-cEEEEEEEEEe
Q 038195           81 SQHFVEKMKEKVE-LDPENKTVAMVVIEGDLMKHFKSYKVIIKVIPKSEG-SLVKWIWEYEK  140 (172)
Q Consensus        81 ~~~~~~~~kEri~-~D~~~~~i~Y~vieGdl~~~~~s~~~t~~v~p~~dG-s~v~w~~~ye~  140 (172)
                             +..++. +++ +++++|....+.     ..+...+.+.+.++| |.++|+.+|..
T Consensus        58 -------~~~~v~~~~p-~~~~~~~~~~~~-----~~~~~~~~~~~~~~g~t~vt~~~~~~g  106 (137)
T d2b79a1          58 -------LAFTLVEVRE-NQCFSDLTATPF-----GNVLFEHEILENPDGTISLRHSVSLTD  106 (137)
T ss_dssp             -------EEEEECCCBT-TTEEEEEEEETT-----EEEEEEEEEEECTTSCEEEEEEEEECS
T ss_pred             -------eeeeeecccC-CcEEEEEecccc-----eeeeeEEEEccCCCCcEEEEEEEeccc
Confidence                   455677 655 457888764332     334556778888887 99999999964

>d2ns9a1 d.129.3.10 (A:10-156) Hypothetical protein APE2225 {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: CoxG-like
domain: Hypothetical protein APE2225
species: Aeropyrum pernix [TaxId: 56636]

Probab=99.19  E-value=6.2e-11  Score=84.37  Aligned_cols=111  Identities=17%  Similarity=0.278  Sum_probs=70.0

Q ss_pred             CceEEEEcCCHHHHHHHhhcCCcccCCcCCCCeeeEEEEecccCCCCcEEEEEeecCCCCCcccchhccccccccccccc
Q 038195            1 METEVEIKSPADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSAGDFPATRTEEQTQSSHLRGLHYQW   80 (172)
Q Consensus         1 ~~~e~~i~apa~kvw~~~~d~~~~lpk~~P~~v~sve~~eGd~g~~Gsvr~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~   80 (172)
                      ++.+++|+||+++||+++.|.. .+|+|+|. ++++++..+.   .+......  .+..  .                 +
T Consensus         5 ~e~si~I~ap~e~Vw~~l~D~~-~~~~w~p~-~~~~~~~~~~---~~~~~~~~--~~~~--~-----------------~   58 (147)
T d2ns9a1           5 YEGSFEVSKTPEEVFEFLTDPK-RFSRAFPG-FKSVEVEDGS---FTIELRLS--LGPL--R-----------------G   58 (147)
T ss_dssp             EEEEEEESSCHHHHHHHHTCHH-HHGGGSTT-EEEEEEETTE---EEEEEEEE--SSSS--E-----------------E
T ss_pred             EEEEEEEcCCHHHHHHHHhCHh-hhhhcccc-hhheeecccc---cceeEEEE--EEEE--e-----------------e
Confidence            3679999999999999999985 79999997 8888764433   12222222  1111  0                 0


Q ss_pred             ccceeeeeEEEEE-ecCCCceEEEEEEeCccccceeEEEEEEEEEecCCCcEEEEEEEEEecCC
Q 038195           81 SQHFVEKMKEKVE-LDPENKTVAMVVIEGDLMKHFKSYKVIIKVIPKSEGSLVKWIWEYEKLQE  143 (172)
Q Consensus        81 ~~~~~~~~kEri~-~D~~~~~i~Y~vieGdl~~~~~s~~~t~~v~p~~dGs~v~w~~~ye~~~~  143 (172)
                          ......... .++.... .+......- .....+..++.+.|.++||.++|+.+++..+.
T Consensus        59 ----~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~l~~~~~gt~v~~~~~~~~~g~  116 (147)
T d2ns9a1          59 ----DARVRASFEDLEKPSKA-TVKGSGRGA-GSTLDFTLRFAVEPSGGGSRVSWVFEGNVGGL  116 (147)
T ss_dssp             ----EEEEEEEEEEEETTTEE-EEEEEEECS-SEEEEEEEEEEEEEETTEEEEEEEEEEEEEEG
T ss_pred             ----EeeeeeeeeeecCCcce-eEEEeeecc-ccceeeEEEEEEEecCCCcEEEEEEEEEeCcc
Confidence                111223333 3333332 222222221 12467888999999999999999999988764

>d1t17a_ d.129.3.6 (A:) Hypothetical protein CC1736 {Caulobacter crescentus [TaxId: 155892]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: oligoketide cyclase/dehydrase-like
domain: Hypothetical protein CC1736
species: Caulobacter crescentus [TaxId: 155892]

Probab=98.89  E-value=1.4e-08  Score=74.62  Aligned_cols=111  Identities=14%  Similarity=0.263  Sum_probs=78.4

Q ss_pred             eEEEEcCCHHHHHHHhhcCCcccCCcCCCCeeeEEEEecccCCCCcEEEEEeecCCCCCcccchhccccccccccccccc
Q 038195            3 TEVEIKSPADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSAGDFPATRTEEQTQSSHLRGLHYQWSQ   82 (172)
Q Consensus         3 ~e~~i~apa~kvw~~~~d~~~~lpk~~P~~v~sve~~eGd~g~~Gsvr~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~   82 (172)
                      ++..|.+||+++|+++.|.. ..|+|+|. .+++++++....+.+......+..+...                      
T Consensus         6 ~~~vi~~~~e~vf~vV~Dve-~Yp~FlP~-c~~~~V~~~~~~~~~~~~~~~~~~~~~~----------------------   61 (148)
T d1t17a_           6 VTKVLPYTPDQLFELVGDVD-AYPKFVPW-ITGMRTWNGRVDGAVSTVDAEAQVGFSF----------------------   61 (148)
T ss_dssp             EEEEESSCTHHHHHHHTTTT-CCSSCCSS-CCCCCEEEEEEETTEEEEEEEEECSTTS----------------------
T ss_pred             EEEEeCCCHHHHHHHHHHHH-hhhhhccc-cCccEEEecccccccceeeEEEEEEeee----------------------
Confidence            45678999999999999995 79999996 8888888754223333333333333220                      


Q ss_pred             ceeeeeEEEEEecCCCceEEEEEEeCccccceeEEEEEEEEEecCCCcEEEEEEEEEecC
Q 038195           83 HFVEKMKEKVELDPENKTVAMVVIEGDLMKHFKSYKVIIKVIPKSEGSLVKWIWEYEKLQ  142 (172)
Q Consensus        83 ~~~~~~kEri~~D~~~~~i~Y~vieGdl~~~~~s~~~t~~v~p~~dGs~v~w~~~ye~~~  142 (172)
                       .......+...+..+..+.....+|.+    +...+.|.+.|.++||.|+|.++|+...
T Consensus        62 -~~~~~~~~~~~~~~~~~~~~~~~~g~f----~~l~~~W~f~~~~~~T~V~~~l~fe~~~  116 (148)
T d1t17a_          62 -LREKFATRVRRDKDARSIDVSLLYGPF----KRLNNGWRFMPEGDATRVEFVIEFAFKS  116 (148)
T ss_dssp             -SCCEEEEEEEEETTTCEEEEEESSTTS----SCEEEEEEEEEETTEEEEEEEEEECCSC
T ss_pred             -eEEEEEEEeeecCCceEEEEeccCchh----hhcccceeeccCCCceEEEEEEEEEECC
Confidence             022234445567777777777665544    6678999999999999999999998664

>d2qpva1 d.129.3.8 (A:1-133) Uncharacterized protein Atu1531 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Atu1531-like
domain: Uncharacterized protein Atu1531
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.86  E-value=7.3e-09  Score=75.80  Aligned_cols=95  Identities=17%  Similarity=0.242  Sum_probs=69.2

Q ss_pred             ceEEEEcCCHHHHHHHhhcCCcccCCcCCCCeeeEEEEecccCCCCcEEEEEeecCCCCCcccchhcccccccccccccc
Q 038195            2 ETEVEIKSPADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSAGDFPATRTEEQTQSSHLRGLHYQWS   81 (172)
Q Consensus         2 ~~e~~i~apa~kvw~~~~d~~~~lpk~~P~~v~sve~~eGd~g~~Gsvr~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~   81 (172)
                      +.+++|++|++.||+++.|+. .+|+|+|+ +.+++..+|+       +.|.+. +..                      
T Consensus         8 ~~~i~I~~p~~~v~~~~~d~~-~~p~w~~~-l~~~~~~~~~-------~~~~~~-~~~----------------------   55 (133)
T d2qpva1           8 IIHLSVEKPWAEVYDFAANPG-NMPRWAAG-LAGGLEADGE-------DWIAKG-GPL----------------------   55 (133)
T ss_dssp             EEEEEESSCHHHHHHHHHCGG-GGGGTCGG-GTTCCEEETT-------EEEEEC-SSS----------------------
T ss_pred             EEEEEECCCHHHHHHHHhChh-hcchhhhc-cceeEEecCC-------cEEEEe-cCC----------------------
Confidence            467899999999999999995 79999996 8888776654       244432 211                      


Q ss_pred             cceeeeeEEEEEecCCCceEEEEEEeCccccceeEEEEEEEEEecCCCcEEEEEE
Q 038195           82 QHFVEKMKEKVELDPENKTVAMVVIEGDLMKHFKSYKVIIKVIPKSEGSLVKWIW  136 (172)
Q Consensus        82 ~~~~~~~kEri~~D~~~~~i~Y~vieGdl~~~~~s~~~t~~v~p~~dGs~v~w~~  136 (172)
                         . -.+-++.-|.++..|.|+...|+-    .....++.+.|.++||.+.|+.
T Consensus        56 ---G-~~~~~i~~~~p~~~i~w~~~~~~~----~~g~v~fr~~~~g~gt~v~~~~  102 (133)
T d2qpva1          56 ---G-EVRVNFAPHNEFGVIDHVVTLPDG----LKVYNALRVTPNGSGTEVSFTL  102 (133)
T ss_dssp             ---C-EEEEEECCCCSSCBCCEEEECTTS----CEEEEEEEEEEETTEEEEEEEE
T ss_pred             ---C-cEEEEEEEcCCCCEEEEEEecCCC----CEEEEEEEEccCCCeEEEEEEE
Confidence               1 133455567889999999988763    2344577888887778887766

>d2pcsa1 d.129.3.10 (A:1-147) Hypothetical protein GKP20 {Geobacillus kaustophilus [TaxId: 1462]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: CoxG-like
domain: Hypothetical protein GKP20
species: Geobacillus kaustophilus [TaxId: 1462]

Probab=98.70  E-value=2e-07  Score=66.72  Aligned_cols=111  Identities=11%  Similarity=0.174  Sum_probs=67.9

Q ss_pred             ceEEEEcCCHHHHHHHhhcCCcccCCcCCCCeeeEEEEecccCCCCcEEEEEeecCCCCCcccchhcccccccccccccc
Q 038195            2 ETEVEIKSPADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSAGDFPATRTEEQTQSSHLRGLHYQWS   81 (172)
Q Consensus         2 ~~e~~i~apa~kvw~~~~d~~~~lpk~~P~~v~sve~~eGd~g~~Gsvr~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~   81 (172)
                      ..+++|++|++++|+++.|.. .+|+++|. ++++++++.+. ..++++   ...|.-  ..                  
T Consensus         4 s~~~~i~~~~e~v~~~l~D~~-~~~~~~Pg-~~~~~~~~~~~-~~~~~~---~~~g~~--~~------------------   57 (147)
T d2pcsa1           4 NGSIELKGTVEEVWSKLMDPS-ILSKCIMG-CKSLELIGEDK-YKADLQ---IGIAAV--KG------------------   57 (147)
T ss_dssp             EEEEEEESCHHHHHHHHTCHH-HHHHHSTT-EEEEEEEETTE-EEEEEE---ECCGGG--CE------------------
T ss_pred             CceEEeCCCHHHHHHHHcCHH-HHHhhCcc-hhhceecCCCE-EEEEEE---Eeecce--ee------------------
Confidence            358999999999999999984 89999997 89999887541 222222   112211  00                  


Q ss_pred             cceeeeeEEEEE-ecCCCceEEEEEEeCccccceeEEEEEEEEEecCCC-cEEEEEEEEEecCC
Q 038195           82 QHFVEKMKEKVE-LDPENKTVAMVVIEGDLMKHFKSYKVIIKVIPKSEG-SLVKWIWEYEKLQE  143 (172)
Q Consensus        82 ~~~~~~~kEri~-~D~~~~~i~Y~vieGdl~~~~~s~~~t~~v~p~~dG-s~v~w~~~ye~~~~  143 (172)
                        ... .+-++. .+..... ....... .......+...+.+.+.++| |.++|.++|+..+.
T Consensus        58 --~~~-~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~T~v~~~~~~~~~g~  116 (147)
T d2pcsa1          58 --KYD-AIIEVTDIKPPYHY-KLLVNGE-GGPGFVNAEGVIDLTPINDECTQLTYTYSAEVGGK  116 (147)
T ss_dssp             --EEE-EEEEEEEEETTTEE-EEEEEEE-ETTEEEEEEEEEEEEESSSSEEEEEEEEEEEEESG
T ss_pred             --eeE-EEEEEeccCcccce-eEeeccc-cccchhcceeEEeeecccCCcEEEEEEEEEEECcH
Confidence              011 233444 5555442 2222211 12234556666666666665 99999999997654

>d1xuva_ d.129.3.5 (A:) Hypothetical protein MM0500 {Methanosarcina mazei [TaxId: 2209]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: AHSA1 domain
domain: Hypothetical protein MM0500
species: Methanosarcina mazei [TaxId: 2209]

Probab=98.66  E-value=1.3e-07  Score=69.98  Aligned_cols=140  Identities=7%  Similarity=0.001  Sum_probs=84.4

Q ss_pred             ceEEEEcCCHHHHHHHhhcCCcccCCcCCCCeeeEEEEecccCCCCcEEEEEeec-CCCCCcccchhccccccccccccc
Q 038195            2 ETEVEIKSPADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSA-GDFPATRTEEQTQSSHLRGLHYQW   80 (172)
Q Consensus         2 ~~e~~i~apa~kvw~~~~d~~~~lpk~~P~~v~sve~~eGd~g~~Gsvr~~~~~~-gg~~~~~~~~~~~~~~~~~~~~~~   80 (172)
                      +.+.+|+||+++||+++.|.. .+++|++..--++...+.| ..+|.-..+.+.. +|.                     
T Consensus        15 ~i~r~i~Ap~e~Vw~a~tdpe-~l~~W~~p~~~~~~~~~~d-~~~gg~~~~~~~~~~g~---------------------   71 (163)
T d1xuva_          15 IITREFDAPRELVFKAFTDPD-LYTQWIGPRGFTTALKIFE-PKNGGSWQYIQKDPEGN---------------------   71 (163)
T ss_dssp             EEEEEESSCHHHHHHHHHCHH-HHTTTCSSTTCEEEEEEEC-CSTTCEEEEEEECTTSC---------------------
T ss_pred             EEEEEeCCCHHHHHHHHcChH-HhhhccCCCCccceeeeee-ceeCceEEEEEEecCCC---------------------
Confidence            567888999999999999974 7899975323345566667 3455544444432 232                     


Q ss_pred             ccceeeeeEEEEE-ecCCCceEEEEEEeCccccceeEEEEEEEEEecCCC-cEEEEEEEEEecCCCCC-ChhhhhHHHHH
Q 038195           81 SQHFVEKMKEKVE-LDPENKTVAMVVIEGDLMKHFKSYKVIIKVIPKSEG-SLVKWIWEYEKLQEDGP-TPSKYVDFVTD  157 (172)
Q Consensus        81 ~~~~~~~~kEri~-~D~~~~~i~Y~vieGdl~~~~~s~~~t~~v~p~~dG-s~v~w~~~ye~~~~~~~-~p~~~~~~~~~  157 (172)
                          .-...-++. +++.++ |.|+.--++....-.....++.+++.++| +++.+...|....+... ......+.-..
T Consensus        72 ----~~~~~g~v~~i~~~~r-l~~tw~~~~~~~~~~~~~v~~~~e~~~~g~t~~~~~~~~~~~~~~~~~~~~g~~~GW~~  146 (163)
T d1xuva_          72 ----EYAFHGVNHDVTEPER-IISTFEFEGLPEKGHVILDTARFEALPGDRTKLTSHSVFQTIEDRDGMLQSGMEEGIND  146 (163)
T ss_dssp             ----EEEEEEEEEEEETTTE-EEEEEEETTSSSSCCCEEEEEEEEEETTTEEEEEEEEECSSHHHHHHHHHTTHHHHHHH
T ss_pred             ----ceEEEEEEEEecCCCE-EEEEEeccCCCCCCCcEEEEEEEEEeCCCcEEEEEEEcCCCHHHHHHHHHHHHHHHHHH
Confidence                223556777 877754 77766444433333345678899999888 77776655422110000 00011234567


Q ss_pred             HHHHHHHHHhhc
Q 038195          158 LTKNIDAHLLKE  169 (172)
Q Consensus       158 ~~k~ie~ylla~  169 (172)
                      ++..|++||-+.
T Consensus       147 ~L~~L~~~le~~  158 (163)
T d1xuva_         147 SYERLDELLEKM  158 (163)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhc
Confidence            788899998653

>d1z94a1 d.129.3.5 (A:2-144) Hypothetical protein CV1439 {Chromobacterium violaceum [TaxId: 536]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: AHSA1 domain
domain: Hypothetical protein CV1439
species: Chromobacterium violaceum [TaxId: 536]

Probab=98.37  E-value=1.3e-05  Score=57.31  Aligned_cols=135  Identities=16%  Similarity=0.135  Sum_probs=84.5

Q ss_pred             ceEEEEcCCHHHHHHHhhcCCcccCCcCCCCeeeEEEEecccCCCCcEEEEEeec--CCCCCcccchhcccccccccccc
Q 038195            2 ETEVEIKSPADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSA--GDFPATRTEEQTQSSHLRGLHYQ   79 (172)
Q Consensus         2 ~~e~~i~apa~kvw~~~~d~~~~lpk~~P~~v~sve~~eGd~g~~Gsvr~~~~~~--gg~~~~~~~~~~~~~~~~~~~~~   79 (172)
                      ..+..|+||+++||+++.+.. .+.+|++..--.+...++| -.+|.--.+.+..  +|.                    
T Consensus         5 ~~~r~i~ap~e~Vw~a~Tdp~-~~~~W~~p~~~~~~~~~~d-~~~Gg~~~~~~~~~~~g~--------------------   62 (143)
T d1z94a1           5 RLHRVLSAPPERVYRAFLDPL-ALAKWLPPEGFVCKVLEHD-ARVGGAYKMEFLAFASGQ--------------------   62 (143)
T ss_dssp             EEEEEESSCHHHHHHHTTCHH-HHHHHSSCTTEEEEEEEEC-CSTTCEEEEEEEETTTCC--------------------
T ss_pred             EEEEEECCCHHHHHHHhcCHH-HHhhhhCCCCccceeEeec-cccceeEEEEEeeCCCCc--------------------
Confidence            467789999999999999974 7889875433445566777 3677665555543  233                    


Q ss_pred             cccceeeeeEEEEE-ecCCCceEEEEEEeCccccceeEEEEEEEEEecCCCcEEEEEEEEEecCCCCCChhhhhHHHHHH
Q 038195           80 WSQHFVEKMKEKVE-LDPENKTVAMVVIEGDLMKHFKSYKVIIKVIPKSEGSLVKWIWEYEKLQEDGPTPSKYVDFVTDL  158 (172)
Q Consensus        80 ~~~~~~~~~kEri~-~D~~~~~i~Y~vieGdl~~~~~s~~~t~~v~p~~dGs~v~w~~~ye~~~~~~~~p~~~~~~~~~~  158 (172)
                           .-.+.-++. +++..+ |.|+-.-.+-... .....++++.+.++||.++.+-  ....+ ..........-..+
T Consensus        63 -----~~~~~g~v~~~~p~~~-i~~t~~~~~~~~~-~~~~v~~~l~~~~~gT~lt~~~--~~~~~-~~~~~~~~~GW~~~  132 (143)
T d1z94a1          63 -----KHAFGGRYLELVPGER-IRYTDRFDDAGLP-GDMITTITLAPLSCGADLSIVQ--EGIPD-AIPPENCYLGWQQS  132 (143)
T ss_dssp             -----EEEEEEEEEEEETTTE-EEEEEEESCCC----CEEEEEEEEEETTEEEEEEEE--ECCCT-TSCHHHHHHHHHHH
T ss_pred             -----EEEEEEEEEEecCCeE-EEEEEeccCCCCC-CcEEEEEEEEEcCCCEEEEEEE--EcCCC-hhHHHHHHHHHHHH
Confidence                 222445666 776655 6676543332111 2345688999999988766543  33322 22334455566777


Q ss_pred             HHHHHHHHhh
Q 038195          159 TKNIDAHLLK  168 (172)
Q Consensus       159 ~k~ie~ylla  168 (172)
                      +..|++||-+
T Consensus       133 l~~L~~~lE~  142 (143)
T d1z94a1         133 LKQLAALVEP  142 (143)
T ss_dssp             HHHHHHHHSC
T ss_pred             HHHHHHHHcC
Confidence            8889988754

>d2il5a1 d.129.3.5 (A:5-168) Hypothetical protein SA2116 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: AHSA1 domain
domain: Hypothetical protein SA2116
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.24  E-value=4.2e-05  Score=56.01  Aligned_cols=139  Identities=14%  Similarity=0.082  Sum_probs=83.1

Q ss_pred             ceEEEEcCCHHHHHHHhhcCCcccCCcCCCCeeeEEEEecccCCCCcEEEEEeecC-CCCCcccchhccccccccccccc
Q 038195            2 ETEVEIKSPADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSAG-DFPATRTEEQTQSSHLRGLHYQW   80 (172)
Q Consensus         2 ~~e~~i~apa~kvw~~~~d~~~~lpk~~P~~v~sve~~eGd~g~~Gsvr~~~~~~g-g~~~~~~~~~~~~~~~~~~~~~~   80 (172)
                      +.+..|+||+++||+++.|.. .+++|.+..--.+...++| -.+|..-.+.+... +.                     
T Consensus        10 ~ier~i~Ap~e~Vw~a~tdpe-~l~~W~~p~~~~~~~~~~d-~~~Gg~~~~~~~~~~g~---------------------   66 (164)
T d2il5a1          10 EIEKLYKFSPELVYEAWTKKD-LLKQWFMTSARTNKEIEAD-VKEGGKYRIVDQQRNGK---------------------   66 (164)
T ss_dssp             EEEEEESSCHHHHHHHTTCHH-HHTTTSSSCTTTEEEEEEC-CSTTCEEEEEEECGGGC---------------------
T ss_pred             EEEEEECCCHHHHHHHHcCHH-HHhCcccCCCccceEEEee-cccCceEEEEEecCCcc---------------------
Confidence            467789999999999999974 7889875322234455666 36666655554332 22                     


Q ss_pred             ccceeeeeEEEEE-ecCCCceEEEEE-EeCccccceeEEEEEEEEEe-cCCCcEEEEEEEEEecCCCCCChhh-------
Q 038195           81 SQHFVEKMKEKVE-LDPENKTVAMVV-IEGDLMKHFKSYKVIIKVIP-KSEGSLVKWIWEYEKLQEDGPTPSK-------  150 (172)
Q Consensus        81 ~~~~~~~~kEri~-~D~~~~~i~Y~v-ieGdl~~~~~s~~~t~~v~p-~~dGs~v~w~~~ye~~~~~~~~p~~-------  150 (172)
                          .-.+.-++. +++.. .|.|+. .+++ .... + ..++.+.+ .++||.++++.+..+..+.......       
T Consensus        67 ----~~~~~g~v~e~~p~~-~i~~t~~~~~~-~~~~-~-~~~~~~~e~~~ggT~vt~~~~~~~~~~~~~~~~~~~~~~~~  138 (164)
T d2il5a1          67 ----VNVIEGIYESLVMDE-YVKMTIGMPGL-SETQ-D-VIEVEFFERETGGTQMLFYYRSLVEKERRFTNLEYKQKKKE  138 (164)
T ss_dssp             ----EEEEEEEEEEEETTT-EEEEEESCC---CCCC-E-EEEEEEEECSSSSEEEEEEEEEEECCCTTCCHHHHHHHHHH
T ss_pred             ----eEEEEEEEEEEcCCC-EEEEEEeccCC-CCCc-e-EEEEEEEEcCCCCEEEEEEEeecChhHhhhhhhhhhhhHHH
Confidence                223455677 76654 455554 1222 1111 2 23444444 4455999999988776554332111       


Q ss_pred             ----hhHHHHHHHHHHHHHHhhccC
Q 038195          151 ----YVDFVTDLTKNIDAHLLKEEQ  171 (172)
Q Consensus       151 ----~~~~~~~~~k~ie~ylla~~~  171 (172)
                          .......++..|.+||-+.+|
T Consensus       139 ~~~~~~~Gw~~~l~~L~~~lE~g~~  163 (164)
T d2il5a1         139 YHDAMVHGFELMFDKMYHVIETSTQ  163 (164)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccCC
Confidence                224567788999999977655

>d1xfsa_ d.129.3.5 (A:) Hypothetical protein NE0264 {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: AHSA1 domain
domain: Hypothetical protein NE0264
species: Nitrosomonas europaea [TaxId: 915]

Probab=98.19  E-value=4.4e-06  Score=61.55  Aligned_cols=138  Identities=9%  Similarity=0.017  Sum_probs=80.2

Q ss_pred             ceEEEEcCCHHHHHHHhhcCCcccCCcCCCCeeeEEEEecccCCCCcEEEEEeec-CCCCCcccchhccccccccccccc
Q 038195            2 ETEVEIKSPADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSA-GDFPATRTEEQTQSSHLRGLHYQW   80 (172)
Q Consensus         2 ~~e~~i~apa~kvw~~~~d~~~~lpk~~P~~v~sve~~eGd~g~~Gsvr~~~~~~-gg~~~~~~~~~~~~~~~~~~~~~~   80 (172)
                      ..+..|+||+++||+++.+. ..+.+|+...--.+...++|. .+|....+.+.. +|.                     
T Consensus         8 ~i~r~i~ap~e~Vw~a~tdp-e~~~~W~~p~~~~~~~~~~d~-~~GG~~~~~~~~~~g~---------------------   64 (165)
T d1xfsa_           8 MLKRELAVPVNLVWRGLTEP-ELLKKWFVPKPWSISDCRVDL-RPGGEFYTVMQDPEGN---------------------   64 (165)
T ss_dssp             EEEEEESSCHHHHHHHHHCH-HHHTTTSSCTTCEEEEEEECC-STTCEEEEEEECTTCC---------------------
T ss_pred             EEEEEEcCCHHHHHHHHcCH-HHHhhcCCCCCccceeecccc-eeCceEEEEEECCCCc---------------------
Confidence            56788999999999999997 478898643222445566773 556555544432 232                     


Q ss_pred             ccceeeeeEEEEE-ecCCCceEEEE--EEeC----------ccccceeEEEEEEEEEecCCCcEEEEEEEEEecCCCCCC
Q 038195           81 SQHFVEKMKEKVE-LDPENKTVAMV--VIEG----------DLMKHFKSYKVIIKVIPKSEGSLVKWIWEYEKLQEDGPT  147 (172)
Q Consensus        81 ~~~~~~~~kEri~-~D~~~~~i~Y~--vieG----------dl~~~~~s~~~t~~v~p~~dGs~v~w~~~ye~~~~~~~~  147 (172)
                          .-...-++. +++.. ++.|+  +..+          +....-.....++.+++.++||.++++..+....+    
T Consensus        65 ----~~~~~g~v~ei~p~~-rl~~t~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~gT~lt~~~~~~~~~~----  135 (165)
T d1xfsa_          65 ----KFPNSGCFLEVTDEK-RLIWTSALVKNYRPAVPATTSDKECAHIVMTAVIELQPTSSGTRYTACAMHNTPGQ----  135 (165)
T ss_dssp             ----EEEEEEEEEEEETTT-EEEEESSEEGGGEECCC-----------CCEEEEEEEECSSSEEEEEEEECSSHHH----
T ss_pred             ----eeeEEEEEEEecCCc-EEEEEEeecccccccccccccccCCCCccEEEEEEEEEcCCcEEEEEEEEcCCHHH----
Confidence                122344566 76653 34443  3221          11111122346888899888998887754332111    


Q ss_pred             hhh-----hhHHHHHHHHHHHHHHhhccC
Q 038195          148 PSK-----YVDFVTDLTKNIDAHLLKEEQ  171 (172)
Q Consensus       148 p~~-----~~~~~~~~~k~ie~ylla~~~  171 (172)
                      .+.     ..+.-..++..|++||-+.+.
T Consensus       136 ~~~~~~~g~~~GW~~~l~~L~~~le~~~a  164 (165)
T d1xfsa_         136 RKLHEEMGFHEGWGTTITQLEELLKQEKA  164 (165)
T ss_dssp             HHHHHTTTHHHHHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            111     123556788999999987653

>d3elia1 d.129.3.5 (A:2-144) Uncharacterized protein SPO3351 {Silicibacter pomeroyi [TaxId: 89184]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: AHSA1 domain
domain: Uncharacterized protein SPO3351
species: Silicibacter pomeroyi [TaxId: 89184]

Probab=97.73  E-value=0.00012  Score=51.96  Aligned_cols=136  Identities=13%  Similarity=0.029  Sum_probs=69.7

Q ss_pred             ceEEEEcCCHHHHHHHhhcCCcccCCcCCCCeeeEEEEeccc-CCCCcEEEEEee-cCCCCCcccchhcccccccccccc
Q 038195            2 ETEVEIKSPADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDW-ESHGSVKSWTFS-AGDFPATRTEEQTQSSHLRGLHYQ   79 (172)
Q Consensus         2 ~~e~~i~apa~kvw~~~~d~~~~lpk~~P~~v~sve~~eGd~-g~~Gsvr~~~~~-~gg~~~~~~~~~~~~~~~~~~~~~   79 (172)
                      ..+..|+||+++||+++.|.. .+.+|++..--.+...+.+. -.+|--..+.+. ..|.                    
T Consensus         4 ~i~r~i~a~~e~Vw~a~tdp~-~l~~W~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~g~--------------------   62 (143)
T d3elia1           4 RLEREFAVAPEALFAWVSDGA-KLLQWWGPEGLHVPADQHDLDFTRLGPWFSVMVNGEGQ--------------------   62 (143)
T ss_dssp             EEEEEESSCHHHHHHHTTCHH-HHHHHCSSTTCBCCTTSBCCCCSSSEEEEEEEECTTCC--------------------
T ss_pred             EEEEEECCCHHHHHHHhcCHH-HHhhhcCCCCceeeeeeEEEeeccCccEEEEEECCCCc--------------------
Confidence            467789999999999999874 67787742111111111110 123322222222 2222                    


Q ss_pred             cccceeeeeEEEEE-ecCCCc-eEEEEEEeCccccceeEEEEEEEEEecCCCcEEEEEEEEEecCCCCCChhhhhHHHHH
Q 038195           80 WSQHFVEKMKEKVE-LDPENK-TVAMVVIEGDLMKHFKSYKVIIKVIPKSEGSLVKWIWEYEKLQEDGPTPSKYVDFVTD  157 (172)
Q Consensus        80 ~~~~~~~~~kEri~-~D~~~~-~i~Y~vieGdl~~~~~s~~~t~~v~p~~dGs~v~w~~~ye~~~~~~~~p~~~~~~~~~  157 (172)
                           .-.+.-++. +++.++ .+++.....+-. .-..-..++.++|.++||.++++-  ....+ ........+.-..
T Consensus        63 -----~~~~~g~v~~~~p~~rl~~t~~~~~~~~~-~~~~~~vt~~l~~~~~gT~l~~~~--~~~~~-~~~~~~~~~GW~~  133 (143)
T d3elia1          63 -----RYKVSGQVTHVKPPQSVGFTWGWHDDDDR-RGAESHVMFIVEPCAKGARLILDH--RELGD-DEMSLRHEEGWTS  133 (143)
T ss_dssp             -----EEEEEEEEEEEETTTEEEEEEEEECTTSC-EEEEEEEEEECCBC--CEEEEEEE--ESCSC-HHHHHHHHHHHHH
T ss_pred             -----EEEEEEEEEEcCCCCEEEEEEeecCCCCC-CCCcEEEEEEEEEcCCCEEEEEEE--EcCCC-HHHHHHHHHHHHH
Confidence                 222445666 877754 234434433321 112334678889988888776543  22211 1111223346677


Q ss_pred             HHHHHHHHHh
Q 038195          158 LTKNIDAHLL  167 (172)
Q Consensus       158 ~~k~ie~yll  167 (172)
                      ++..|++||.
T Consensus       134 ~L~~L~~~lA  143 (143)
T d3elia1         134 SLRKLAAELA  143 (143)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHhC
Confidence            7788888873

>d1xn5a_ d.129.3.5 (A:) Hypothetical protein BH1534 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: AHSA1 domain
domain: Hypothetical protein BH1534
species: Bacillus halodurans [TaxId: 86665]

Probab=97.39  E-value=0.00041  Score=49.03  Aligned_cols=91  Identities=11%  Similarity=0.158  Sum_probs=58.0

Q ss_pred             CceEEEEcCCHHHHHHHhhcCCcccCCcCCCCeeeEEEEecccCCCCcEEEEEeecCCCCCcccchhccccccccccccc
Q 038195            1 METEVEIKSPADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSAGDFPATRTEEQTQSSHLRGLHYQW   80 (172)
Q Consensus         1 ~~~e~~i~apa~kvw~~~~d~~~~lpk~~P~~v~sve~~eGd~g~~Gsvr~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~   80 (172)
                      ++.++.|+||+++||+++.+.. .+.+|++..       ..+ -++|..-.  +..+..                     
T Consensus         7 i~~~~~i~ap~e~Vw~alt~p~-~~~~W~~~~-------~~~-~~~g~~~~--~~~~~~---------------------   54 (138)
T d1xn5a_           7 IKKEVRFNAPIEKVWEAVSTSE-GLAFWFMEN-------DLK-AETGHHFH--LQSPFG---------------------   54 (138)
T ss_dssp             EEEEEEESSCHHHHHHHTTSHH-HHHTTSCCB-------CCC-SCTTCEEE--EECSSC---------------------
T ss_pred             EEEEEEECCCHHHHHHHHcCHH-HhceEccCC-------ccc-ccceeeEE--ecCCcc---------------------
Confidence            3578999999999999999974 789999852       122 13444333  222111                     


Q ss_pred             ccceeeeeEEEEE-ecCCCceEEEEEEeCccccceeEEEEEEEEEecCCCcEEEEEEE
Q 038195           81 SQHFVEKMKEKVE-LDPENKTVAMVVIEGDLMKHFKSYKVIIKVIPKSEGSLVKWIWE  137 (172)
Q Consensus        81 ~~~~~~~~kEri~-~D~~~~~i~Y~vieGdl~~~~~s~~~t~~v~p~~dGs~v~w~~~  137 (172)
                           . +.-++. +++.. +|.|+.-.++       ...++.++|.++||.++++-.
T Consensus        55 -----~-~~g~v~~~~~~~-~l~~~~~~~~-------~~v~~~l~~~~~gT~lt~~~~   98 (138)
T d1xn5a_          55 -----P-SPCQVTDVERPI-KLSFTWDTDG-------WSVTFHLKEEENGTIFTIVHS   98 (138)
T ss_dssp             -----E-EEEEEEEEETTT-EEEEEETTTT-------EEEEEEEEECSSSEEEEEEEE
T ss_pred             -----c-eeEEEEEEeCCc-EEEEEecCCC-------eEEEEEEEEcCCcEEEEEEEe
Confidence                 1 233555 76554 6788752222       346888999988898777643

>d2nn5a1 d.129.3.5 (A:1-160) Hypothetical protein EF2215 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: AHSA1 domain
domain: Hypothetical protein EF2215
species: Enterococcus faecalis [TaxId: 1351]

Probab=97.13  E-value=0.0029  Score=46.83  Aligned_cols=118  Identities=8%  Similarity=0.049  Sum_probs=66.4

Q ss_pred             ceEEEEcCCHHHHHHHhhcCCcccCCcCCCCeeeEEEEecccCCCCcEEEEEeecCCCCCcccchhcccccccccccccc
Q 038195            2 ETEVEIKSPADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSAGDFPATRTEEQTQSSHLRGLHYQWS   81 (172)
Q Consensus         2 ~~e~~i~apa~kvw~~~~d~~~~lpk~~P~~v~sve~~eGd~g~~Gsvr~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~   81 (172)
                      ..|..|+||+++||+++.+.. .+.+|+|. ...     +|. .+|.--.+.+.. +.                      
T Consensus        15 ~~er~i~ap~e~Vw~AlTdpe-~l~~W~~~-~~~-----~d~-~~GG~~~~~~~~-~~----------------------   63 (160)
T d2nn5a1          15 GTERAISASPQTIWRYLTETD-KLKQWFPE-LEI-----GEL-GVNGFWRFILPD-FE----------------------   63 (160)
T ss_dssp             EEEEEESSCHHHHHHHHHCHH-HHHHHCTT-EEE-----EEC-STTCEEEEEETT-EE----------------------
T ss_pred             EEEEEecCCHHHHHHHHcCHH-HHHhhCCC-CCc-----ccc-cCCCeeEEEcCC-CC----------------------
Confidence            468899999999999999975 78999996 322     331 333333444422 11                      


Q ss_pred             cceeeeeEEEEE-ecCCCceEEEEEEeCccccceeEEEEEEEEEecCCC-cEEEEEEEEEecCCCCCChhhhhHHHHHHH
Q 038195           82 QHFVEKMKEKVE-LDPENKTVAMVVIEGDLMKHFKSYKVIIKVIPKSEG-SLVKWIWEYEKLQEDGPTPSKYVDFVTDLT  159 (172)
Q Consensus        82 ~~~~~~~kEri~-~D~~~~~i~Y~vieGdl~~~~~s~~~t~~v~p~~dG-s~v~w~~~ye~~~~~~~~p~~~~~~~~~~~  159 (172)
                            ..-+|. ++ .++++.|+-  |.      + ..++.+.|.++| |++..+=.. +.. ....-......=..++
T Consensus        64 ------~~~~v~~~e-pp~rL~~tW--~~------~-~v~~eL~~~~~~~t~l~l~~~~-~~~-~~~~~~~~~~GW~~~L  125 (160)
T d2nn5a1          64 ------ETMPFTDYA-EEKYLGVTW--DT------G-IIYFDLKEQAPHQTLLVFSESL-PEN-FTTPRHKDIAGWSIVL  125 (160)
T ss_dssp             ------EEEEEEEEE-TTTEEEEEE--TT------E-EEEEEEEEEETTEEEEEEEEEE-CTT-CSSCHHHHHHHHHHHH
T ss_pred             ------cceEEEEEe-cCCEEEEEe--cC------c-eEEEEEecCCCCeEEEEEEEec-Ccc-ccchhhhhHHHHHHHH
Confidence                  224555 76 456677774  21      1 257788887666 655444332 111 1111111122335556


Q ss_pred             HHHHHHHhh
Q 038195          160 KNIDAHLLK  168 (172)
Q Consensus       160 k~ie~ylla  168 (172)
                      ..|.+||-.
T Consensus       126 d~L~~~leg  134 (160)
T d2nn5a1         126 NRLKQVVET  134 (160)
T ss_dssp             HHHHHHHHC
T ss_pred             HHHHHHHcC
Confidence            667777643

>d1xn6a_ d.129.3.5 (A:) Hypothetical protein BC4709 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: AHSA1 domain
domain: Hypothetical protein BC4709
species: Bacillus cereus [TaxId: 1396]

Probab=96.88  E-value=0.00079  Score=48.33  Aligned_cols=29  Identities=7%  Similarity=0.149  Sum_probs=25.6

Q ss_pred             ceEEEEcCCHHHHHHHhhcCCcccCCcCCC
Q 038195            2 ETEVEIKSPADKFYNTFSSKAHTVPNMSPG   31 (172)
Q Consensus         2 ~~e~~i~apa~kvw~~~~d~~~~lpk~~P~   31 (172)
                      +.++.|+||+++||+++.+.. .+.+|++.
T Consensus        11 ~~~~~i~ap~e~Vw~alTdp~-~l~~W~~~   39 (143)
T d1xn6a_          11 KQTIVFNASIQKVWSVVSTAE-GIASWFMP   39 (143)
T ss_dssp             EEEEEESSCHHHHHHTTSCSH-HHHTTSCC
T ss_pred             EEEEEECCCHHHHHHHhcChH-HhceEeec
Confidence            568899999999999999975 78899875

>d2k5ga1 d.129.3.5 (A:1-183) Uncharacterized protein BPP1335 {Bordetella parapertussis [TaxId: 519]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: AHSA1 domain
domain: Uncharacterized protein BPP1335
species: Bordetella parapertussis [TaxId: 519]

Probab=96.67  E-value=0.0012  Score=49.19  Aligned_cols=138  Identities=10%  Similarity=0.088  Sum_probs=73.5

Q ss_pred             ceEEEEcCCHHHHHHHhhcCCcccCCcCCCCeeeEEEEecccCCCCcEEEEEeecCCCCCcccchhcccccccccccccc
Q 038195            2 ETEVEIKSPADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSAGDFPATRTEEQTQSSHLRGLHYQWS   81 (172)
Q Consensus         2 ~~e~~i~apa~kvw~~~~d~~~~lpk~~P~~v~sve~~eGd~g~~Gsvr~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~   81 (172)
                      ..+..++||+++||+++.+.. .+.+|+...       +.+ -.+|..-.+.+..++......  ......         
T Consensus        22 ~~er~~~Ap~e~VW~AlTdpe-~l~~W~~p~-------~~d-~~~Gg~~~~~~~~~~~~~~~~--~~~~~~---------   81 (183)
T d2k5ga1          22 RFERLLPGPIERVWAWLADAD-KRARWLAGG-------ELP-RQPGQTFELHFNHAALTAETA--PARYAQ---------   81 (183)
T ss_dssp             EEEEEESSSSHHHHHHHHCHH-HHTTTSCCC-------CCC-SSTTCEEEEEECGGGSCCSSC--CSSCSG---------
T ss_pred             EEEEEeCCCHHHHHHHHhChH-HHhhhcCCC-------Ccc-ccCCCEEEEEecCCCCccccc--cccccc---------
Confidence            457789999999999999874 788998641       233 245554444443322100000  000000         


Q ss_pred             cceeeeeEEEEE-ecCCCceEEEEEEeCccccceeEEEEEEEEEecCCCcEEEEEEEEEecCCCCCChhhh---hHHHHH
Q 038195           82 QHFVEKMKEKVE-LDPENKTVAMVVIEGDLMKHFKSYKVIIKVIPKSEGSLVKWIWEYEKLQEDGPTPSKY---VDFVTD  157 (172)
Q Consensus        82 ~~~~~~~kEri~-~D~~~~~i~Y~vieGdl~~~~~s~~~t~~v~p~~dGs~v~w~~~ye~~~~~~~~p~~~---~~~~~~  157 (172)
                      .+..-.+.-++. +++. +.+.|+...++-. ...  ..++.+++.++||.++.+-.  ..    ++.+..   ...-..
T Consensus        82 ~~~~~~~~g~v~~~~p~-~rl~~tw~~~~~~-~~s--~v~~~l~~~g~gT~ltl~~~--~~----~~~~~~~~~~~GW~~  151 (183)
T d2k5ga1          82 YDRPIVARHTLLRCEPP-RVLALTWGGGAGE-APS--EVLFELSEAGEQVRLVLTHT--RL----ADRAAMLDVAGGWHA  151 (183)
T ss_dssp             GGSCEEEEEEEEEEETT-TEEEEECCCCSSS-SCC--EEEEEEEECSSSEEEEEEEE--CC----CSHHHHHHHTTTTTT
T ss_pred             CCCceeEEEEEEEEeCC-eEEEEEeccCCCC-CcE--EEEEEEEEcCCcEEEEEEEe--cC----CChhhHHHHhhhHHH
Confidence            000122445676 8764 5577776544321 112  35788889888887755432  11    122222   223345


Q ss_pred             HHHHHHHHHhhc
Q 038195          158 LTKNIDAHLLKE  169 (172)
Q Consensus       158 ~~k~ie~ylla~  169 (172)
                      .+..|.+||-..
T Consensus       152 ~L~~L~~~leg~  163 (183)
T d2k5ga1         152 HLAVLAGKLAGQ  163 (183)
T ss_dssp             HHHHHHHHHHTS
T ss_pred             HHHHHHHHHCCC
Confidence            667777777643

>d1x53a1 d.129.3.5 (A:8-139) Activator of 90 kda heat shock protein ATPase homolog 1, AHSA1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: AHSA1 domain
domain: Activator of 90 kda heat shock protein ATPase homolog 1, AHSA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.58  E-value=0.0009  Score=47.73  Aligned_cols=119  Identities=12%  Similarity=0.119  Sum_probs=65.7

Q ss_pred             ceEEEEcCCHHHHHHHhhcCCcccCCcCCCCeeeEEEEecccCCCCcEEEEEeecCCCCCcccchhcccccccccccccc
Q 038195            2 ETEVEIKSPADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSAGDFPATRTEEQTQSSHLRGLHYQWS   81 (172)
Q Consensus         2 ~~e~~i~apa~kvw~~~~d~~~~lpk~~P~~v~sve~~eGd~g~~Gsvr~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~   81 (172)
                      ..+.+++||+++||+++.+.. .+.+|+... .     +.|. .+|..  +.+. ++.                      
T Consensus         7 ~~~r~~~ap~e~Vw~a~tdpe-~l~~W~~~~-~-----~~d~-~~Gg~--f~~~-~g~----------------------   53 (132)
T d1x53a1           7 TLKETFLTSPEELYRVFTTQE-LVQAFTHAP-A-----TLEA-DRGGK--FHMV-DGN----------------------   53 (132)
T ss_dssp             EEEEEESSCHHHHHHHTTCHH-HHHHHSCSC-C-----BCCC-STTCC--CBBT-TTT----------------------
T ss_pred             EEEEEECCCHHHHHHHHcCHH-HHHhhhCCc-c-----cccc-ccCCE--EEEE-ecc----------------------
Confidence            467788999999999999974 788998531 1     2331 23321  1121 222                      


Q ss_pred             cceeeeeEEEEE-ecCCCceEEEEEEeCcccc-ceeEEEEEEEEEecCCCcEEEEEEEEEecCCCCCChhhhhHH-HHHH
Q 038195           82 QHFVEKMKEKVE-LDPENKTVAMVVIEGDLMK-HFKSYKVIIKVIPKSEGSLVKWIWEYEKLQEDGPTPSKYVDF-VTDL  158 (172)
Q Consensus        82 ~~~~~~~kEri~-~D~~~~~i~Y~vieGdl~~-~~~s~~~t~~v~p~~dGs~v~w~~~ye~~~~~~~~p~~~~~~-~~~~  158 (172)
                            +.-++. +++..+ |.|+---.+... .+  -..++.+++.++||.++.+-..-+..+    .+...+. -..+
T Consensus        54 ------~~G~~~ev~p~~r-lv~tw~~~~~~~~~~--s~vt~~l~~~~~~T~l~l~~~g~p~~~----~e~~~~GW~~~~  120 (132)
T d1x53a1          54 ------VSGEFTDLVPEKH-IVMKWRFKSWPEGHF--ATITLTFIDKNGETELCMEGRGIPAPE----EERTRQGWQRYY  120 (132)
T ss_dssp             ------EECCEEEEETTTE-EEEEEEETTSCTTCC--EEEEEECCBCSSCEEEEEEEEEEEHHH----HHHHHHTTHHHH
T ss_pred             ------eeEEEEEEeCCCE-EEEEEecCCCCCCCc--EEEEEEEEECCCcEEEEEEEECCCcch----HHHHHhhHHHHH
Confidence                  122344 665553 444432223221 22  235788889887898888877654221    2223332 2335


Q ss_pred             HHHHHHHH
Q 038195          159 TKNIDAHL  166 (172)
Q Consensus       159 ~k~ie~yl  166 (172)
                      ++.|.+|+
T Consensus       121 ~~~lk~~f  128 (132)
T d1x53a1         121 FEGIKQTF  128 (132)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHHc
Confidence            67777665

>d1zxfa1 d.129.3.5 (A:1-155) Calicheamicin gene cluster protein CalC {Micromonospora echinospora [TaxId: 1877]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: AHSA1 domain
domain: Calicheamicin gene cluster protein CalC
species: Micromonospora echinospora [TaxId: 1877]

Probab=96.26  E-value=0.00098  Score=47.86  Aligned_cols=131  Identities=11%  Similarity=0.104  Sum_probs=68.2

Q ss_pred             ceEEEEcCCHHHHHHHhhcCCcccCCcCCCC-----eeeEEEEecccCCCCcEEEEEeecCCCCCcccchhccccccccc
Q 038195            2 ETEVEIKSPADKFYNTFSSKAHTVPNMSPGN-----LHGVEVHEGDWESHGSVKSWTFSAGDFPATRTEEQTQSSHLRGL   76 (172)
Q Consensus         2 ~~e~~i~apa~kvw~~~~d~~~~lpk~~P~~-----v~sve~~eGd~g~~Gsvr~~~~~~gg~~~~~~~~~~~~~~~~~~   76 (172)
                      ..++.|+||+++||+++.+   .+++|.|..     +.++.+..+-   -|..+.  ..++|.                 
T Consensus         7 ~~~~~i~Ap~e~Vf~a~te---~~~~Ww~~~~~~~~~~~~~~~~~~---gG~~~~--~~~dG~-----------------   61 (155)
T d1zxfa1           7 RHSVTVKADRKTAFKTFLE---GFPEWWPNNFRTTKVGAPLGVDKK---GGRWYE--IDEQGE-----------------   61 (155)
T ss_dssp             EEEEEESSHHHHHHHHHTT---CSSSSSSGGGSTTTTCSSCEEETT---TTEEEC--CCTTTS-----------------
T ss_pred             EEEEEEeCCHHHHHHHHHh---hhHhhcCCCCCCceEEEEEEeeCC---CceEEE--Eccccc-----------------
Confidence            5689999999999999985   267886542     2222222222   233322  122332                 


Q ss_pred             ccccccceeeeeEEEEE-ecCCCceEEEEEEeCccc--cceeEEEEEEEEEecCCC-cEEEEEEEEEecCCCCCC-hhhh
Q 038195           77 HYQWSQHFVEKMKEKVE-LDPENKTVAMVVIEGDLM--KHFKSYKVIIKVIPKSEG-SLVKWIWEYEKLQEDGPT-PSKY  151 (172)
Q Consensus        77 ~~~~~~~~~~~~kEri~-~D~~~~~i~Y~vieGdl~--~~~~s~~~t~~v~p~~dG-s~v~w~~~ye~~~~~~~~-p~~~  151 (172)
                               .++.-++. +++.. +|.|+---++..  ..-.....++.+++.++| |.++.+  .......... .+..
T Consensus        62 ---------~~~~g~v~ei~p~~-rl~~tw~~~~~~~~~~~~~s~v~~~~~~~~~~~T~ltl~--h~g~~~~~~~~~~~~  129 (155)
T d1zxfa1          62 ---------EHTFGLIRKVDEPD-TLVIGWRLNGFGRIDPDNSSEFTVTFVADGQKKTRVDVE--HTHFDRMGTKHAKRV  129 (155)
T ss_dssp             ---------CCCCEEEEEEETTT-EEEEECCCSSSSSCCCSSCCCEEEEEEEETTTEEEEEEE--ECSSTTSCHHHHHHH
T ss_pred             ---------eeeeEEEEEEecCc-EEEEEEecCCccccccccceEEEEEEEecCCCCEEEEEE--EeccCcccchhHHHH
Confidence                     01223455 76665 566664222211  111223467888888765 755544  3322221111 1111


Q ss_pred             ----hHHHHHHHHHHHHHHhhc
Q 038195          152 ----VDFVTDLTKNIDAHLLKE  169 (172)
Q Consensus       152 ----~~~~~~~~k~ie~ylla~  169 (172)
                          .+.-..++..|.+||-+.
T Consensus       130 ~~~~~~GW~~~L~~L~~~le~~  151 (155)
T d1zxfa1         130 RNGMDKGWPTILQSFQDKIDEE  151 (155)
T ss_dssp             HHHHTTTHHHHHHHHHHHHHHH
T ss_pred             HhhhhhhHHHHHHHHHHHhhhh
Confidence                124567778888888654

>d2ffsa1 d.129.3.7 (A:1-151) Hypothetical protein PA1206 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: PA1206-like
domain: Hypothetical protein PA1206
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.96  E-value=0.045  Score=40.33  Aligned_cols=93  Identities=11%  Similarity=0.118  Sum_probs=58.2

Q ss_pred             HHHHHHHhhcCCcccCCcCCCCeeeEEEEecccCCCCcEEEEEeecCCCCCcccchhcccccccccccccccceeeeeEE
Q 038195           11 ADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSAGDFPATRTEEQTQSSHLRGLHYQWSQHFVEKMKE   90 (172)
Q Consensus        11 a~kvw~~~~d~~~~lpk~~P~~v~sve~~eGd~g~~Gsvr~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kE   90 (172)
                      .+.+|+-+...+..--.++|+ +.+|++++.+  +.+-.|.++|+. +                            .++|
T Consensus        22 r~QlW~GL~lrar~p~~Fv~~-l~~c~v~~~~--~~~~~Rel~fg~-~----------------------------~v~e   69 (151)
T d2ffsa1          22 RLQLWEGLVCRAREPQYFVVG-LERFEILVDD--GDRLHRRLYLPG-L----------------------------VVED   69 (151)
T ss_dssp             HHHHHHHHHHHHHCGGGTCTT-CCEEEEEEEC--SSEEEEEEEETT-E----------------------------EEEE
T ss_pred             HHHHHHHHHHhhcCHhhcccc-cceEEEEEec--CCeEEEEEEECC-c----------------------------eeEE
Confidence            568999888654344467775 9999999865  347889999942 2                            2789


Q ss_pred             EEEecCCCceEEEEEEe-Cc-cccceeEEEEEEEEEecCCCcEEEEEEEEEecC
Q 038195           91 KVELDPENKTVAMVVIE-GD-LMKHFKSYKVIIKVIPKSEGSLVKWIWEYEKLQ  142 (172)
Q Consensus        91 ri~~D~~~~~i~Y~vie-Gd-l~~~~~s~~~t~~v~p~~dGs~v~w~~~ye~~~  142 (172)
                      ++.+.+..+ +.|++-. |+ .+   .+...  .++...+| -.-.++.|+...
T Consensus        70 ~Vtl~~~~~-v~f~~~a~~~~~g---~~l~~--~Ieep~~g-~L~lrf~Ye~~~  116 (151)
T d2ffsa1          70 EVVLKAPDS-AHYSIKPSAEVAG---GSLDM--TIEEPEPG-SLFVRFAYCTRY  116 (151)
T ss_dssp             EEEEETTTE-EEEEECCCSSSBE---EEEEE--EEEEEETT-EEEEEEEEEEEC
T ss_pred             EEEEcCCcE-EEEEcccccCCCC---cEEEE--EEccCCCC-eEEEEEEEEcCC
Confidence            999655555 3665432 22 22   33333  34333445 346677887543

>d1jssa_ d.129.3.2 (A:) Cholesterol-regulated Start protein 4 (Stard4). {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: STAR domain
domain: Cholesterol-regulated Start protein 4 (Stard4).
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.83  E-value=0.2  Score=36.39  Aligned_cols=138  Identities=11%  Similarity=0.007  Sum_probs=77.8

Q ss_pred             eEEEEcCCHHHHHHHhhcCCcccCCcCCCCeeeEEEEecccCCCCcEEEEEeecCCCCCcccchhccccccccccccccc
Q 038195            3 TEVEIKSPADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSAGDFPATRTEEQTQSSHLRGLHYQWSQ   82 (172)
Q Consensus         3 ~e~~i~apa~kvw~~~~d~~~~lpk~~P~~v~sve~~eGd~g~~Gsvr~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~   82 (172)
                      .+..+++|++++++.+.|.. ..++|.|. +.+.++++-. +....+-+..+..-..|                 +...|
T Consensus        48 ~~~~i~~~~~~v~~~l~d~~-~~~~Wd~~-~~~~~~le~~-~~~~~i~~~~~~~~~~~-----------------~v~~R  107 (199)
T d1jssa_          48 AQGVMDDVVNNVIDHIRPGP-WRLDWDRL-MTSLDVLEHF-EENCCVMRYTTAGQLLN-----------------IISPR  107 (199)
T ss_dssp             EEEEESSCHHHHHHHHSSST-THHHHCSS-EEEEEEEEEC-STTEEEEEEEECCBTTT-----------------TBCCE
T ss_pred             EEEEeCCCHHHHHHHHhChh-hhhhcccc-hheEEEEEEc-CCCcEEEEEEEcccCCC-----------------CcCCc
Confidence            57888999999999999874 78999995 9999999864 22334444333221111                 11223


Q ss_pred             ceeeeeEEEEE-ecCCCceEEEEEEeCc-cccc---eeEEEEEEEEEecCCC---cEEEEEEEEEecCCCCCChhhhh--
Q 038195           83 HFVEKMKEKVE-LDPENKTVAMVVIEGD-LMKH---FKSYKVIIKVIPKSEG---SLVKWIWEYEKLQEDGPTPSKYV--  152 (172)
Q Consensus        83 ~~~~~~kEri~-~D~~~~~i~Y~vieGd-l~~~---~~s~~~t~~v~p~~dG---s~v~w~~~ye~~~~~~~~p~~~~--  152 (172)
                      ++   +--+.. -++....+........ ..+.   ...+.+-+.+.|.++|   |.+++.+...+.+. .  |.-+.  
T Consensus       108 D~---v~~~~~~~~~~~~~~~~~~~~~~p~~~~~VR~~~~~~~~~i~p~~~~~~~t~vt~~~~~Dp~G~-i--P~~lvn~  181 (199)
T d1jssa_         108 EF---VDFSYTVGYEEGLLSCGVSVEWSETRPEFVRGYNHPCGWFCVPLKDSPSQSLLTGYIQTDLRGM-I--PQSAVDT  181 (199)
T ss_dssp             EE---EEEEEEEEETTEEEEEEEECCCCCCCTTSEECEECSEEEEEEEETTEEEEEEEEEEECEECCSC-C--CHHHHHH
T ss_pred             EE---EEEEEEEEcCCcEEEEEEecCCCCCCCceEEEEEeeeeEEEEEcCCCCCcEEEEEEEEcCCCCC-C--cHHHHHH
Confidence            32   212222 2333322222222211 1112   3355577888887664   88888888888874 2  33332  


Q ss_pred             ---HHHHHHHHHHHHHH
Q 038195          153 ---DFVTDLTKNIDAHL  166 (172)
Q Consensus       153 ---~~~~~~~k~ie~yl  166 (172)
                         ..+..+++.|...|
T Consensus       182 ~~~~~~~~~~~~Lr~~l  198 (199)
T d1jssa_         182 AMASTLANFYSDLRKGL  198 (199)
T ss_dssp             HHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHhc
Confidence               24445556665554

>d1em2a_ d.129.3.2 (A:) Lipid transport domain of Mln64 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: STAR domain
domain: Lipid transport domain of Mln64
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.34  E-value=0.33  Score=35.53  Aligned_cols=141  Identities=5%  Similarity=-0.013  Sum_probs=80.9

Q ss_pred             eEEEEcCCHHHHHH-HhhcCCcccCCcCCCCeeeEEEEecccCCCCcEEEEEeecCCCCCcccchhcccccccccccccc
Q 038195            3 TEVEIKSPADKFYN-TFSSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSAGDFPATRTEEQTQSSHLRGLHYQWS   81 (172)
Q Consensus         3 ~e~~i~apa~kvw~-~~~d~~~~lpk~~P~~v~sve~~eGd~g~~Gsvr~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~   81 (172)
                      .+..+++|++++++ ++.|. ...++|.|. +.++++++--. .-..|-+..+....+ .+.                -.
T Consensus        56 ~~~~i~~~~~~v~~~~~~d~-e~~~~Wd~~-~~~~~ile~~~-~~~~i~~~~~~~~~~-~~v----------------s~  115 (214)
T d1em2a_          56 LKTFLPCPAELVYQEVILQP-ERMVLWNKT-VTACQILQRVE-DNTLISYDVSAGAAG-GVV----------------SP  115 (214)
T ss_dssp             EEEEESSCHHHHHHHTTTCH-HHHTTTCTT-EEEEEEEEEET-TTEEEEEEEECCBTT-TTB----------------CC
T ss_pred             EEEEEeCCHHHHHHHHHhCh-HHHHHHHHH-HhheEEEEEcC-CCceEEEEEecccCC-CCC----------------CC
Confidence            57788999999997 44454 478999995 99999998531 112233333322111 111                01


Q ss_pred             cceeeeeEEEEE-ecCCCceEEEEEEeCc-c--ccc---eeEEEEEEEEEecCC--C-cEEEEEEEEEecCCCCCChhhh
Q 038195           82 QHFVEKMKEKVE-LDPENKTVAMVVIEGD-L--MKH---FKSYKVIIKVIPKSE--G-SLVKWIWEYEKLQEDGPTPSKY  151 (172)
Q Consensus        82 ~~~~~~~kEri~-~D~~~~~i~Y~vieGd-l--~~~---~~s~~~t~~v~p~~d--G-s~v~w~~~ye~~~~~~~~p~~~  151 (172)
                         ..++-.+-. .++....+....+.-+ .  ...   ...+.+.+-+.|.++  | |.++|.+...+.+.  . |.-+
T Consensus       116 ---RD~v~~~~~~~~~~~~~~~~~s~~~~~~p~~~~~vR~~~~~~~~~i~p~~~~~~~t~vt~~~~~Dp~G~--i-P~~l  189 (214)
T d1em2a_         116 ---RDFVNVRRIERRRDRYLSSGIATSHSAKPPTHKYVRGENGPGGMIVLKSASNPRVCTFVWILNTDLKGR--L-PRYL  189 (214)
T ss_dssp             ---EEEEEEEEEEECSSEEEEEEEECCCTTSCCCTTSEECEECSEEEEEEECSSCTTCEEEEEEECEECCSS--S-CHHH
T ss_pred             ---cEEEEEEEEEEcCCcEEEEEEeeccccccCCCCeEEEEEEeeeEEEEECCCCCCeEEEEEEEEeCCCCC--C-CHHH
Confidence               223333444 5555555555544433 1  112   234456667777543  4 99999999998885  2 3333


Q ss_pred             h-----HHHHHHHHHHHHHHhhc
Q 038195          152 V-----DFVTDLTKNIDAHLLKE  169 (172)
Q Consensus       152 ~-----~~~~~~~k~ie~ylla~  169 (172)
                      .     .....+++.|..++.+.
T Consensus       190 vn~~~~~~~~~~~~~Lrk~~~k~  212 (214)
T d1em2a_         190 IHQSLAATMFEFAFHLRQRISEL  212 (214)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHh
Confidence            2     24555667777777653

>d2psoa1 d.129.3.2 (A:908-1104) Star-related lipid transfer protein 13 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: STAR domain
domain: Star-related lipid transfer protein 13
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.62  E-value=3.1  Score=29.82  Aligned_cols=114  Identities=13%  Similarity=0.070  Sum_probs=65.3

Q ss_pred             eEEEEcCCHHHHHHHhhcCCcccCCcCCCCeeeEEEEecccCCCCcEEEEEeecCCCCCcccchhccccccccccccccc
Q 038195            3 TEVEIKSPADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSAGDFPATRTEEQTQSSHLRGLHYQWSQ   82 (172)
Q Consensus         3 ~e~~i~apa~kvw~~~~d~~~~lpk~~P~~v~sve~~eGd~g~~Gsvr~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~   82 (172)
                      .+.+++|+++.++..+-+.   .++|.|. +.+++++|--+   .....+.+.-..+ .+.+                . 
T Consensus        48 ~~~~i~a~~~~vl~~~l~~---r~~Wd~~-~~~~~~le~~~---~~~~i~y~~~~~p-~pvs----------------~-  102 (197)
T d2psoa1          48 ASVEVEAPPSVVLNRVLRE---RHLWDED-FVQWKVVETLD---RQTEIYQYVLNSM-APHP----------------S-  102 (197)
T ss_dssp             EEEEESSCHHHHHHHHHHC---GGGTCTT-BCCCEEEEEEE---TTEEEEEEEECCS-SSCC----------------C-
T ss_pred             EEEEEcCCHHHHHHHHHHh---HHHHhhh-hheEEEEEEcC---CCCEEEEEEccCC-Cccc----------------c-
Confidence            5678899999988665543   3689995 88888887421   1222333322322 1110                1 


Q ss_pred             ceeeeeEEEEE-ecCCC--ceEEEEEEeCcc-c-c---ceeEEEEEEEEEecCCC-cEEEEEEEEEecCC
Q 038195           83 HFVEKMKEKVE-LDPEN--KTVAMVVIEGDL-M-K---HFKSYKVIIKVIPKSEG-SLVKWIWEYEKLQE  143 (172)
Q Consensus        83 ~~~~~~kEri~-~D~~~--~~i~Y~vieGdl-~-~---~~~s~~~t~~v~p~~dG-s~v~w~~~ye~~~~  143 (172)
                        ..++..+-. .+.++  ..+...-++.+. . +   ....+.+-+.++|.++| |.+++.+...+.|.
T Consensus       103 --RD~v~~~~~~~~~~~~~~~i~~~Sv~~~~~p~~~~VR~~~~~~~~~i~p~~~~~t~vt~~~~~Dp~G~  170 (197)
T d2psoa1         103 --RDFVVLRTWKTDLPKGMCTLVSLSVEHEEAQLLGGVRAVVMDSQYLIEPCGSGKSRLTHICRIDLKGH  170 (197)
T ss_dssp             --EEEEEEEEEESCCGGGCEEEEEEECCCTTCCCCSSEECCEEEEEEEEEECSTTCEEEEEEEEECCSSS
T ss_pred             --eeEEEEEEEEEeCCCCEEEEEEEeccccCCCCCCcEEEEEEeccEEEEECCCCcEEEEEEEEECCCCc
Confidence              122222222 33333  444444444431 1 1   23466777889999988 99999999988764

>d1ln1a_ d.129.3.2 (A:) Phosphatidylcholine transfer protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: STAR domain
domain: Phosphatidylcholine transfer protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.55  E-value=6.9  Score=27.59  Aligned_cols=135  Identities=12%  Similarity=0.069  Sum_probs=73.0

Q ss_pred             eEEEE-cCCHHHHHHHhhcCCcccCCcCCCCeeeEEEEecccCCCCcEEEEEeecCCCCCcccchhcccccccccccccc
Q 038195            3 TEVEI-KSPADKFYNTFSSKAHTVPNMSPGNLHGVEVHEGDWESHGSVKSWTFSAGDFPATRTEEQTQSSHLRGLHYQWS   81 (172)
Q Consensus         3 ~e~~i-~apa~kvw~~~~d~~~~lpk~~P~~v~sve~~eGd~g~~Gsvr~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~   81 (172)
                      ++..+ .+|++.++.++.|.. ..++|.|. +.++.....++   -.|-.+.+..-.+ .                  ..
T Consensus        49 ~~~~i~~~~~~~~~~~l~d~~-~~~~Wd~~-~~~~~~~~~~~---~~i~y~~~~~p~p-~------------------~~  104 (203)
T d1ln1a_          49 VFGVLEDCSPTLLADIYMDSD-YRKQWDQY-VKELYEQECNG---ETVVYWEVKYPFP-M------------------SN  104 (203)
T ss_dssp             EEEEETTSCHHHHHHHHHCHH-HHHHHCTT-EEEEEEEEETT---EEEEEEEECCCTT-S------------------CC
T ss_pred             EEEEEcCCCHHHHHHHHcCHh-Hhhhhccc-ceEEEEEccCC---cEEEEEEcccccc-c------------------CC
Confidence            56778 499999999999874 67999996 66654333221   1333444432211 1                  11


Q ss_pred             cceeeeeEEE--EEecCCCceEEEEEE---e-Cccc--cc---eeEEEEEEEEEecCCC-cEEEEEEEEEecCCCCCChh
Q 038195           82 QHFVEKMKEK--VELDPENKTVAMVVI---E-GDLM--KH---FKSYKVIIKVIPKSEG-SLVKWIWEYEKLQEDGPTPS  149 (172)
Q Consensus        82 ~~~~~~~kEr--i~~D~~~~~i~Y~vi---e-Gdl~--~~---~~s~~~t~~v~p~~dG-s~v~w~~~ye~~~~~~~~p~  149 (172)
                         ..++-.+  ...+++...+...+.   + .++.  +.   ...+.+.+.++|.+++ |.+.+...-.+.+. .  |.
T Consensus       105 ---RD~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~p~~~~~vR~~~~~~~~~l~~~~~~~t~v~~~~~~Dp~G~-i--P~  178 (203)
T d1ln1a_         105 ---RDYVYLRQRRDLDMEGRKIHVILARSTSMPQLGERSGVIRVKQYKQSLAIESDGKKGSKVFMYYFDNPGGQ-I--PS  178 (203)
T ss_dssp             ---EEEEEEEEEEEECSTTCCEEEEEEEECCBTTBCCCTTSEEECCEEEEEEEEECSSSSEEEEEEEEECCSSC-C--CH
T ss_pred             ---ceEEEEEEEEEccCCCCeEEEEEeecccCCcCcccCCccccceeeEEEEEEecCCCcEEEEEEEEcCCCCc-C--HH
Confidence               2222222  223444332222221   1 1121  11   3356678889998776 99999998888763 2  33


Q ss_pred             hhh-----HHHHHHHHHHHHHHh
Q 038195          150 KYV-----DFVTDLTKNIDAHLL  167 (172)
Q Consensus       150 ~~~-----~~~~~~~k~ie~yll  167 (172)
                      -+.     ..+..+++.|....+
T Consensus       179 ~lvn~~~~~~~~~~~~~l~k~~~  201 (203)
T d1ln1a_         179 WLINWAAKNGVPNFLKDMARACQ  201 (203)
T ss_dssp             HHHHHHHHTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHh
Confidence            322     244555566655443