Citrus Sinensis ID: 038197

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360------
Protein Sequence
MEEKESTVSGSPGGDSYTDSPPPVSSDVLLPQHMQPQAMNIDLGVGGAASGAATMASPPGNSGSSVDIFGKKKRGRPRKYDSDGNLRVPSVLSSSTSSPPPGFSLTLSPEFSSSSSSKRGRGRPPGSGNWQLLASLGELFANTAGGDFTPHVVTVNTGEDVAGKILSFSQKGPRGICVLSANGAVSNVTIRQPGSSGGILTYEGRFEILSLSGSFTVTETGGARSRTGGLSVSLAGPDGRVIGGGVAGLLMAASPIQIVVGSFMPNGFKVHKRKHHREQTMPFMSPGGAPETLAAARPISQVNPEKETSLTPITPVPRQSQAEVGNAENSKQVPNPTTSQSAGWNGSETTTSQRPSPDINVSLPNE
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEccccccHHHHHHHHHHHcccEEEEEEccccEEEEEEcccccccccEEEEccEEEEEEEEEEEEcccccccccccccEEEEccccccEEEEEcccEEEEEccEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccccEEEEEcccHHHHHHHHHHHHccccEEEEEEcccEEEEEEEEcccccccEEEEEcEEEEEEEccccccccccccccccccEEEEEEcccccEEEccHHHHHHccccEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
meekestvsgspggdsytdspppvssdvllpqhmqpqamnidlgvggaasgaatmasppgnsgssvdifgkkkrgrprkydsdgnlrvpsvlssstsspppgfsltlspefsssssskrgrgrppgsgnWQLLASLGELfantaggdftphvvtvntgedvagkilsfsqkgprgicvlsangavsnvtirqpgssggiltyEGRFEILSlsgsftvtetggarsrtgglsvslagpdgrvigGGVAGLLMAaspiqivvgsfmpngfkvhkrkhhreqtmpfmspggapetlaaarpisqvnpeketsltpitpvprqsqaevgnaenskqvpnpttsqsagwngsetttsqrpspdinvslpne
Flexible Loop (DISEMBL)
meekestvsgspggdsytdsPPPVSSDVLLPQHMQPQAMNIDLGVGGAASGAATmasppgnsgssvdifgkkkrgrprkydsdgnlrvpsvlssstsspppgFSLTLSPEFSSSSSSKRGRGRPPGSGNWQLLASLGELFANTAGGDFTPHVVTVNTGEDVAGKILSFSQKGPRGICVLSangavsnvtirqpgssggILTYEGRFEILSLSGSFTVTETGGARSRTGGLSVSLAGPDGRVIGGGVAGLLMAASPIQIVVGSFMPNGFKVHKRKHHREQTMPFMSPGGAPETLAAARPISqvnpeketsltpitpvprQSQAEvgnaenskqvpnpttsqsagwngsetttsqrpspdinvslpne
Low Complexity Region (SEG)
MEEKESTVSGSPGGDSYTdspppvssdvllpQHMQPQAMNIDLgvggaasgaatmasppgNSGSSVDIFGKKKRGRPRKYDSDGNLRvpsvlssstsspppgfsltlspefsssssskrgrgrppgsgNWQLLASLGELFANTAGGDFTPHVVTVNTGEDVAGKILSFSQKGPRGICVLSANGAVSNVTIRQPGSSGGILTYEGRFEILSLSGSFTVTETGGARSRTGGLSVSLAGPDGRVIGGGVAGLLMAASPIQIVVGSFMPNGFKVHKRKHHREQTMPFMSPGGAPETLAAARPISQVNPEKETSLTPITPVPRQSQAEVGNAENSKQVPNPTTSQSAGWNGSETTTSQRPSPDINVSLPNE
Disordered region (IsUnstruct)
********************************************************************************************************************************NWQLLASLGELFANTAGGDFTPHVVTVNTGEDVAGKILSFSQKGPRGICVLSANGAVSNVTIRQPGSSGGILTYEGRFEILSLSGSFTVTETGGA***TGGLSVSLAGPDGRVIGGGVAGLLMAASPIQIVVGSFMPNGFKV************************************************************************************************
Disordered Region (DISOPRED)
********************************************************************************D************************************************************NTAGGDFTPHVVTVNTGEDVAGKILSFSQKGPRGICVLSANGAVSNVTIRQPGSSGGILTYEGRFEILSLSGSFTVT*********GGLSVSLAGPDGRVIGGGVAGLLMAASPIQIVVGSFMP***********************************************************************************************VSLP**
Disordered Region (DISEMBL)
***********************VSSDVLLPQHMQPQAMNIDLGVGGA***************SSVDIFGKK*********SDGNLRV**************************************SGNWQLLASLGELFANTAGGDFTPHVVTVNTGEDVAGKILSFSQKGPRGICVLSANGAVSNVTIRQPGSSGGILTYEGRFEILSLSGSFTV***********GLSVSLAGPDGRVIGGGVAGLLMAASPIQIVVGSFMPNGFKVHKRKHHREQTMPFMSPGGAPETLAAARPISQVNPEKETSLTPITPVPR************************************************
Disordered Region (DISPRO)
************************************************************************************N**********************************************LLASLGELFANTAGGDFTPHVVTVNTGEDVAGKILSFSQKGPRGICVLSANGAVSNVTIRQPGSSGGILTYEGRFEILSLSGSFTVTETGGARSRTGGLSVSLAGPDGRVIGGGVAGLLMAASPIQIVVGSFMPNGF**************************************************************************************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEEKESTVSGSPGGDSYTDSPPPVSSDVLLPQHMQPQAMNIDLGVGGAASGAATMASPPGNSGSSVDIFGKKKRGRPRKYDSDGNLRVPSVLSSSTSSPPPGFSLTLSPEFSSSSSSKRGRGRPPGSGNWQLLASLGELFANTAGGDFTPHVVTVNTGEDVAGKILSFSQKGPRGICVLSANGAVSNVTIRQPGSSGGILTYEGRFEILSLSGSFTVTETGGARSRTGGLSVSLAGPDGRVIGGGVAGLLMAASPIQIVVGSFMPNGFKVHKRKHHREQTMPFMSPGGAPETLAAARPISQVNPEKETSLTPITPVPRQSQAEVGNAENSKQVPNPTTSQSAGWNGSETTTSQRPSPDINVSLPNE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	366	2.2.26 [Sep-21-2011]
Q9S7C9	311	Putative DNA-binding prot	no	no	0.407	0.479	0.390	5e-11

>sp|Q9S7C9|ESCA_ARATH Putative DNA-binding protein ESCAROLA OS=Arabidopsis thaliana GN=ESC PE=2 SV=1

 Score = 69.3 bits (168), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 64/164 (39%), Positives = 91/164 (55%), Gaps = 15/164 (9%)

Query: 109 PEFSSSSSSKRGRGRPPGSGNWQLLASLGELFANTAGGDFTPHVVTVNTGEDVAGKILSF 168
           P  SSS+  KR RGRPPGS N    A    +    +      HV+ V+ G D+   + ++
Sbjct: 77  PNTSSSAPGKRPRGRPPGSKNK---AKPPIIVTRDSPNALRSHVLEVSPGADIVESVSTY 133

Query: 169 SQKGPRGICVLSANGAVSNVTIRQP---------GSSGGILTYEGRFEILSLSGSFTVTE 219
           +++  RG+ VL  NG VSNVT+RQP            GG++T  GRFEILSL+G+     
Sbjct: 134 ARRRGRGVSVLGGNGTVSNVTLRQPVTPGNGGGVSGGGGVVTLHGRFEILSLTGTVLPPP 193

Query: 220 TGGARSRTGGLSVSLAGPDGRVIGGGVAGLLMAASPIQIVVGSF 263
              A    GGLS+ LAG  G+V+GG V   L+A++P+ ++  SF
Sbjct: 194 ---APPGAGGLSIFLAGGQGQVVGGSVVAPLIASAPVILMAASF 234

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	366
255575345	408	DNA binding protein, putative [Ricinus c	0.986	0.884	0.645	1e-125
225441014	361	PREDICTED: uncharacterized protein LOC10	0.950	0.963	0.654	1e-120
297740052	324	unnamed protein product [Vitis vinifera]	0.795	0.898	0.736	1e-116
356533463	396	PREDICTED: uncharacterized protein LOC10	0.808	0.747	0.619	5e-94
388500614	357	unknown [Lotus japonicus]	0.822	0.843	0.608	2e-91
357440217	362	hypothetical protein MTR_1g061530 [Medic	0.904	0.914	0.528	1e-85
148905791	383	unknown [Picea sitchensis]	0.748	0.715	0.526	1e-70
294461667	302	unknown [Picea sitchensis]	0.756	0.917	0.533	4e-63
255557601	376	DNA binding protein, putative [Ricinus c	0.546	0.531	0.564	3e-59
356535315	324	PREDICTED: uncharacterized protein LOC10	0.576	0.651	0.587	1e-57

>gi|255575345|ref|XP_002528575.1| DNA binding protein, putative [Ricinus communis] gi|223531971|gb|EEF33783.1| DNA binding protein, putative [Ricinus communis]

 Score =  455 bits (1171), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 258/400 (64%), Positives = 294/400 (73%), Gaps = 39/400 (9%)

Query: 1   MEEKESTVSGSPGGDSYTDSPPPVSSDVLLPQHMQPQAMNIDLGVGG------------- 47
           MEEKESTVSGSP G S TDSP PVSS V +    Q   MNI++ +G              
Sbjct: 1   MEEKESTVSGSPMG-SETDSPQPVSSMVAVEPPPQQVMMNINMNMGAPGENVMILERSSN 59

Query: 48  -AASGAATMASPPGNSGSS--------VDIFGKKKRGRPRKYDSDGNLRVP--------S 90
            +A+ AA++AS  G+ G          +D+FGKKKRGRPRKYDS+GNLRV         S
Sbjct: 60  VSATTAASIASSGGSGGGGGGNNNNNSLDLFGKKKRGRPRKYDSEGNLRVQPFNHYQAVS 119

Query: 91  VLSSSTSSPPP---GFSLTLSP-EFSSSSSSKRGRGRPPGSGNWQLLASLGELFANTAGG 146
             + + +SPPP    FS + SP +   +SSSKRGRGRPPGSGNWQLLASLGELFANTAGG
Sbjct: 120 AATGALTSPPPTTPAFSFSPSPPDHGFNSSSKRGRGRPPGSGNWQLLASLGELFANTAGG 179

Query: 147 DFTPHVVTVNTGEDVAGKILSFSQKGPRGICVLSANGAVSNVTIRQPGSSGGILTYEGRF 206
           DFTPHVVTVNTGEDVAGKI SF+QKGPRGIC+LSANGAVSNVTIRQPGSSGGILTYEGRF
Sbjct: 180 DFTPHVVTVNTGEDVAGKIHSFAQKGPRGICILSANGAVSNVTIRQPGSSGGILTYEGRF 239

Query: 207 EILSLSGSFTVTETGGARSRTGGLSVSLAGPDGRVIGGGVAGLLMAASPIQIVVGSFMPN 266
           EILSLSGSFTV+E GG RSRTGGLSVSLA PDGRVIGGG+AGLL+AASPIQIV+GSFMPN
Sbjct: 240 EILSLSGSFTVSENGGVRSRTGGLSVSLASPDGRVIGGGIAGLLLAASPIQIVMGSFMPN 299

Query: 267 GFKVHKRKHHREQTMPFMSPGGAPETLAAARPISQVNPEKETSLTPITPVPRQSQAEVGN 326
           G+KVHK+KHHRE T+   + G     ++ A PISQ  P  ET L   +PVP QS     N
Sbjct: 300 GYKVHKKKHHRENTVIRGTQG----VVSEASPISQAKPNGETCLISASPVPEQSHGGTEN 355

Query: 327 AENSKQVPNPTTSQSAGWNGSETTTSQRPSPDINVSLPNE 366
           + N +Q+PN T S S  WNGSE T+ QRPSPDINVS+ NE
Sbjct: 356 SANDQQIPNATNSLSVCWNGSEPTSDQRPSPDINVSVLNE 395

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225441014|ref|XP_002277536.1| PREDICTED: uncharacterized protein LOC100254577 [Vitis vinifera]

 Score =  437 bits (1125), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 248/379 (65%), Positives = 281/379 (74%), Gaps = 31/379 (8%)

Query: 1   MEEKESTVSGSPGGDSYTDSPPPVSSDVLLPQHMQPQAMNIDLGVGGAAS---------- 50
           MEEKESTVSGSPG +S  +SPP VS  V       PQ MN+ + +    S          
Sbjct: 1   MEEKESTVSGSPG-NSEAESPP-VSGVV-------PQVMNMAINMSMERSLGGGDDGGGV 51

Query: 51  ---GAATMASPPGNSGSSVDIFGKKKRGRPRKYDSDGNLRVPSVLSSSTSSPPPGFSLTL 107
                  ++   G    S D+ G+KKRGRPRKYD+DGNLR+     S   SPPPGF+L+ 
Sbjct: 52  GGNVGGRISGGGGGGSGSFDLLGRKKRGRPRKYDADGNLRL-----SYAVSPPPGFTLSS 106

Query: 108 SPEFSSSSSSKRGRGRPPGSGNWQLLASLGELFANTAGGDFTPHVVTVNTGEDVAGKILS 167
               SS  SSKRGRGRPPGSGNWQLLASLGELFANTAGGDFTPHVVTVNTGEDVA KILS
Sbjct: 107 P---SSDFSSKRGRGRPPGSGNWQLLASLGELFANTAGGDFTPHVVTVNTGEDVASKILS 163

Query: 168 FSQKGPRGICVLSANGAVSNVTIRQPGSSGGILTYEGRFEILSLSGSFTVTETGGARSRT 227
           FSQKGPRGICVLSANGAVSNVTIRQPGSSGGILTYEGRFEILSLSGSFTV+++GGARSRT
Sbjct: 164 FSQKGPRGICVLSANGAVSNVTIRQPGSSGGILTYEGRFEILSLSGSFTVSDSGGARSRT 223

Query: 228 GGLSVSLAGPDGRVIGGGVAGLLMAASPIQIVVGSFMPNGFKVHKRKHHREQTMPFMSPG 287
           GGLSVSLAGPDGRVIGGG+AG+L AA PIQIVVGSFMPNG+K HKRKHHRE T   + P 
Sbjct: 224 GGLSVSLAGPDGRVIGGGIAGILTAAGPIQIVVGSFMPNGYKTHKRKHHREPTTTSIIP- 282

Query: 288 GAPETLAAARPISQVNPEKETSLTPITPVPRQSQAEVGNAENSKQVPNPTTSQSAGWNGS 347
            AP+T+ AARPISQ  PE    L   +P   QS  E  ++ N+KQ+ N  + QSA WNGS
Sbjct: 283 PAPDTVTAARPISQAAPEVGPCLNSTSPSHGQSHGEADDSVNNKQISNVISLQSAAWNGS 342

Query: 348 ETTTSQRPSPDINVSLPNE 366
           E  + QRPSPDIN+++P+E
Sbjct: 343 EHKSEQRPSPDINLTVPSE 361

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297740052|emb|CBI30234.3| unnamed protein product [Vitis vinifera]

 Score =  423 bits (1088), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 221/300 (73%), Positives = 247/300 (82%), Gaps = 9/300 (3%)

Query: 67  DIFGKKKRGRPRKYDSDGNLRVPSVLSSSTSSPPPGFSLTLSPEFSSSSSSKRGRGRPPG 126
           D+ G+KKRGRPRKYD+DGNLR+     S   SPPPGF+L+     SS  SSKRGRGRPPG
Sbjct: 34  DLLGRKKRGRPRKYDADGNLRL-----SYAVSPPPGFTLSSP---SSDFSSKRGRGRPPG 85

Query: 127 SGNWQLLASLGELFANTAGGDFTPHVVTVNTGEDVAGKILSFSQKGPRGICVLSANGAVS 186
           SGNWQLLASLGELFANTAGGDFTPHVVTVNTGEDVA KILSFSQKGPRGICVLSANGAVS
Sbjct: 86  SGNWQLLASLGELFANTAGGDFTPHVVTVNTGEDVASKILSFSQKGPRGICVLSANGAVS 145

Query: 187 NVTIRQPGSSGGILTYEGRFEILSLSGSFTVTETGGARSRTGGLSVSLAGPDGRVIGGGV 246
           NVTIRQPGSSGGILTYEGRFEILSLSGSFTV+++GGARSRTGGLSVSLAGPDGRVIGGG+
Sbjct: 146 NVTIRQPGSSGGILTYEGRFEILSLSGSFTVSDSGGARSRTGGLSVSLAGPDGRVIGGGI 205

Query: 247 AGLLMAASPIQIVVGSFMPNGFKVHKRKHHREQTMPFMSPGGAPETLAAARPISQVNPEK 306
           AG+L AA PIQIVVGSFMPNG+K HKRKHHRE T   + P  AP+T+ AARPISQ  PE 
Sbjct: 206 AGILTAAGPIQIVVGSFMPNGYKTHKRKHHREPTTTSIIP-PAPDTVTAARPISQAAPEV 264

Query: 307 ETSLTPITPVPRQSQAEVGNAENSKQVPNPTTSQSAGWNGSETTTSQRPSPDINVSLPNE 366
              L   +P   QS  E  ++ N+KQ+ N  + QSA WNGSE  + QRPSPDIN+++P+E
Sbjct: 265 GPCLNSTSPSHGQSHGEADDSVNNKQISNVISLQSAAWNGSEHKSEQRPSPDINLTVPSE 324

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356533463|ref|XP_003535283.1| PREDICTED: uncharacterized protein LOC100812673 [Glycine max]

 Score =  350 bits (899), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 194/313 (61%), Positives = 226/313 (72%), Gaps = 17/313 (5%)

Query: 65  SVDIFGKKKRGRPRKYDSDGNLRVPSVLSSSTSSPPPGFSLTLSPEFSSSSSSKRGRGR- 123
           S+D+FGKKKRGRPRKYD+DGNLRV +     T +PP GF+L+   E+SSS   KR RG+ 
Sbjct: 90  SLDLFGKKKRGRPRKYDADGNLRVSA---RPTPTPPSGFTLSTPSEYSSS---KRERGKH 143

Query: 124 -----PPGSGNWQLLAS-LGELFANTAGGDFTPHVVTVNTGEDVAGKILSFSQKGPRGIC 177
                   S   QL +S LG++FA TA GDF  HV+   TGEDVAGKILSF+QKGPRGIC
Sbjct: 144 YNTTFANNSYQQQLYSSSLGDVFAITAAGDFVAHVLNAYTGEDVAGKILSFAQKGPRGIC 203

Query: 178 VLSANGAVSNVTIRQPGSSGGILTYEGRFEILSLSGSFTVTETGGARSRTGGLSVSLAGP 237
           +LSANGA+SNVTIRQPGSSGGILTYEGRFEILSLSGSFTV +  G +SRTGGLSVSLAGP
Sbjct: 204 ILSANGAISNVTIRQPGSSGGILTYEGRFEILSLSGSFTVVDNSGMKSRTGGLSVSLAGP 263

Query: 238 DGRVIGGGVAGLLMAASPIQIVVGSFMPNGFKVHKRKHHREQTMPFMSPGGA-PETLAAA 296
           DGRVIGGGVAGLL AA PIQIVVGSFM N  K  KRK+ REQ +   +P  A PE + AA
Sbjct: 264 DGRVIGGGVAGLLTAAGPIQIVVGSFMQNCCKTQKRKYQREQQIVAATPTSAGPEIVTAA 323

Query: 297 RPISQVN-PEKETSL--TPITPVPRQSQAEVGNAENSKQVPNPTTSQSAGWNGSETTTSQ 353
            PISQ N  + E  L   PI  +P Q+Q E  +  + KQ  + T   +A WNGSE  + Q
Sbjct: 324 IPISQANAADGENFLIPIPIYQIPDQNQRESISVSSDKQNLDATPDAAATWNGSEEYSDQ 383

Query: 354 RPSPDINVSLPNE 366
           R SPDIN+SLP+E
Sbjct: 384 RTSPDINISLPDE 396

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388500614|gb|AFK38373.1| unknown [Lotus japonicus]

 Score =  342 bits (877), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 190/312 (60%), Positives = 235/312 (75%), Gaps = 11/312 (3%)

Query: 59  PGNSGSSVDIFGKKKRGRPRKYDSDGNLRVPSVLSSSTSSPPPGFSLTLSPEFSSSSSSK 118
           PG++  S+D+F KKKRGRPRKYD+DGNL  P+   S+T  PP  F+L+ +   ++  S+K
Sbjct: 53  PGSTEGSLDLFAKKKRGRPRKYDADGNLN-PAYKKSAT--PPQRFTLSAT---ANEFSAK 106

Query: 119 RGRGRPP-GSGNWQLLASLGELFANTAGGDFTPHVVTVNTGEDVAGKILSFSQKGPRGIC 177
           RGRG+P  G GN+ L AS GE+FA++A GDFTPHVVTV TGEDVAGKI+SF+QK PRGIC
Sbjct: 107 RGRGKPATGFGNYHLFASFGEVFASSASGDFTPHVVTVYTGEDVAGKIMSFAQKSPRGIC 166

Query: 178 VLSANGAVSNVTIRQPGSSGGILTYEGRFEILSLSGSFTVTETGGARSRTGGLSVSLAGP 237
           +LSANG +SNV +RQPGS GGILTYEGRFEILSLSGSF+V+++ G +SR+ GLSVSLAGP
Sbjct: 167 ILSANGPISNVILRQPGSCGGILTYEGRFEILSLSGSFSVSDSSGMKSRSAGLSVSLAGP 226

Query: 238 DGRVIGGGVAGLLMAASPIQIVVGSFMPNGF-KVHKRKHHREQTMPFMSPGGAPETLAAA 296
           DGRVIGGGVAGLL AA PIQIVVGSFMPNG+ K HKRK+ RE T+   +  G PET+  A
Sbjct: 227 DGRVIGGGVAGLLTAAGPIQIVVGSFMPNGYLKTHKRKYQREHTVASPTSTG-PETVTGA 285

Query: 297 RPISQVNPEKETSLTPIT--PVPRQSQAEVGNAENSKQVPNPTTSQSAGWNGSETTTSQR 354
            PISQ N + E  + P+T   +P Q Q E  +  + KQ  + T   +A WNGSE  + QR
Sbjct: 286 TPISQANSDGENYMIPMTQSQIPLQIQRESVSVPSDKQSLDGTPDAAANWNGSEEYSDQR 345

Query: 355 PSPDINVSLPNE 366
            SPDIN+SL +E
Sbjct: 346 TSPDINISLSDE 357

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357440217|ref|XP_003590386.1| hypothetical protein MTR_1g061530 [Medicago truncatula] gi|355479434|gb|AES60637.1| hypothetical protein MTR_1g061530 [Medicago truncatula]

 Score =  322 bits (826), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 188/356 (52%), Positives = 235/356 (66%), Gaps = 25/356 (7%)

Query: 29  LLPQHMQPQAMNIDLGVGGA---------ASGAATMASPPGNSGSSVDIFGKKKRGRPRK 79
           L+  +  PQ MN+++ VG +          +  A   +P   +  S+D+FGKKKRGRPRK
Sbjct: 14  LVTTNTLPQEMNMNISVGNSIVTTIGTSIVALEAPTVTPTTTTPGSLDLFGKKKRGRPRK 73

Query: 80  YDSDGNLRVPSVLSSSTSSP----PPGFSLTLSPEFSSSSSSKRGRGRPPGSGNWQLLAS 135
           YD+DGNL         T++P    PPGF+L+ + EF+S    K+GRG+  G  N+Q  +S
Sbjct: 74  YDADGNLNPSYKKIVKTTTPILTSPPGFTLSTN-EFAS----KKGRGKSTGFVNYQTFSS 128

Query: 136 LGELFANTAGGDFTPHVVTVNTGEDVAGKILSFSQKGPRGICVLSANGAVSNVTIRQPGS 195
            GE+F +TA  DF PHVVTV  GEDV GKILSF+QK PRGIC+LSANGA+S V + QPGS
Sbjct: 129 FGEVFPSTAAVDFAPHVVTVYAGEDVGGKILSFAQKSPRGICILSANGAISKVALGQPGS 188

Query: 196 SGG-ILTYEGRFEILSLSGSFTVTETGGARSRTGGLSVSLAGPDGRVIGGGVAGLLMAAS 254
           +GG ILTYEGRFEILSLSGS+T ++  G R+R GGLSVSLAGPDGRVIGG VAG+L+AA 
Sbjct: 189 TGGSILTYEGRFEILSLSGSYTASDNSGIRTREGGLSVSLAGPDGRVIGGAVAGVLIAAG 248

Query: 255 PIQIVVGSFMPNG--FKVHKRKHHREQTMPFMSPGGAPETLAAARPISQVNPEKETSLTP 312
           PIQIVVGSFM NG   K  KRK+ REQT+   +  G PE + AARPISQ N   E  + P
Sbjct: 249 PIQIVVGSFMSNGNNSKPLKRKYQREQTVASPTSTG-PEIVTAARPISQANIHGENFMIP 307

Query: 313 IT--PVPRQSQAEVGNAENSKQVPNPTTSQSAGWNGSETTTSQRPSPDINVSLPNE 366
           I    +P Q Q E  N  + K   + T      WN S+  + QR SPDIN+SLP+E
Sbjct: 308 IMSHQLPDQIQRESINVSSDKLNLDATPDDDT-WNSSDEYSDQRTSPDINISLPDE 362

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|148905791|gb|ABR16059.1| unknown [Picea sitchensis]

 Score =  273 bits (697), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 160/304 (52%), Positives = 200/304 (65%), Gaps = 30/304 (9%)

Query: 71  KKKRGRPRKYDSDGNLRVPSVLSSSTSSPPPGFSLTLSP----EFSSSSSSKRGRGRPPG 126
           K+KRGRPRKY  DG++                 +L L+P    + S S + KRGRGRPPG
Sbjct: 98  KRKRGRPRKYGPDGSM-----------------ALALAPLSSVQGSLSPTQKRGRGRPPG 140

Query: 127 SGNWQLLASLGELFANTAGGDFTPHVVTVNTGEDVAGKILSFSQKGPRGICVLSANGAVS 186
           SG  Q LA+LGE  A +AG  FTPHV+T+  GED A KI+SFSQ+GPR +C+LSANGA+S
Sbjct: 141 SGRKQQLAALGEWLAGSAGMGFTPHVITIAAGEDAATKIMSFSQQGPRAVCILSANGAIS 200

Query: 187 NVTIRQPGSSGGILTYEGRFEILSLSGSFTVTETGGARSRTGGLSVSLAGPDGRVIGGGV 246
           +VT+RQP +SGG +TYEGRFEILSLSGSF +TE GG RSRTGGLSVSLAGPDGRVIGGGV
Sbjct: 201 HVTLRQPATSGGTVTYEGRFEILSLSGSFLLTENGGTRSRTGGLSVSLAGPDGRVIGGGV 260

Query: 247 AGLLMAASPIQIVVGSFMPNGFKVHKRKHHREQTMPFMSPG--GAPETLAAARPISQ--V 302
           AG+LMAASP+Q+VVGSF+ NG K   +  + E ++     G  G P   A A PIS+  V
Sbjct: 261 AGMLMAASPVQVVVGSFISNGRKAQAKPVNPEPSIAQSQAGYSGGP---AVAIPISKGAV 317

Query: 303 NPEK--ETSLTPITPVPRQSQAEVGNAENSKQVPNPTTSQSAGWNGSETTTSQRPSPDIN 360
           N     +T       + + + A V N    + + N  T QS GW GS++T   R + DIN
Sbjct: 318 NDSSGGKTGGAGNPSLNQNTGASVSNTSAQQPIQNMATYQSMGWPGSQSTGDLRRNTDIN 377

Query: 361 VSLP 364
           + LP
Sbjct: 378 IPLP 381

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|294461667|gb|ADE76393.1| unknown [Picea sitchensis]

 Score =  248 bits (632), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 159/298 (53%), Positives = 201/298 (67%), Gaps = 21/298 (7%)

Query: 71  KKKRGRPRKYDSDGNLRVPSVLSSSTSSPPPGFSLTLSPEFSSSSSSKRGRGRPPGSGNW 130
           K+KRGRPRKY  DG++ + ++   S S+P   FS             KRGRGRPPGSG  
Sbjct: 20  KRKRGRPRKYGPDGSMAL-ALAPLSASAPGAPFSPL----------QKRGRGRPPGSGKK 68

Query: 131 QLLASLGELFANTAGGDFTPHVVTVNTGEDVAGKILSFSQKGPRGICVLSANGAVSNVTI 190
           Q LA+LGE    +AG  FTPHV+T+  GEDVA KI+SFSQ+GPR +C+LSANGA+SNVT+
Sbjct: 69  QRLAALGEWVVGSAGIGFTPHVITIAAGEDVASKIMSFSQQGPRAVCILSANGAISNVTL 128

Query: 191 RQPGSSGGILTYEGRFEILSLSGSFTVTETGGARSRTGGLSVSLAGPDGRVIGGGVAGLL 250
           RQP +SGG LTYEGRFEILSLSGSF +TE GGARSRTGGLSVSLA PDGRV+GGGVAG+L
Sbjct: 129 RQPATSGGTLTYEGRFEILSLSGSFMLTENGGARSRTGGLSVSLASPDGRVVGGGVAGML 188

Query: 251 MAASPIQIVVGSFMPNGFKVHKRKHHREQTMPF--MSPGGAPETLAAARPISQVNPEKET 308
           MAASP+Q+VVGSF+ NG K   +    E ++     +  G P     A PIS+ +P  +T
Sbjct: 189 MAASPVQVVVGSFISNGQKDPPKPAKPEPSIGLAQAAASGGP----VAIPISR-SPLNDT 243

Query: 309 SLTPITPVPRQSQ--AEVGNAENSKQVPNPTTSQSAGWNGSETTTSQRPSPDINVSLP 364
              P +P   Q+   + + N  N + + N T+ QS  W GS++    R + DIN+SLP
Sbjct: 244 YGGPGSPPLNQNTGGSAISN-TNQQAIHNMTSFQSMAWTGSQSMKEARHNTDINISLP 300

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255557601|ref|XP_002519830.1| DNA binding protein, putative [Ricinus communis] gi|223540876|gb|EEF42434.1| DNA binding protein, putative [Ricinus communis]

 Score =  235 bits (599), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 122/216 (56%), Positives = 154/216 (71%), Gaps = 16/216 (7%)

Query: 71  KKKRGRPRKYDSDGNLRV---PSVLSSSTSSPPPGFS--------LTLSPEFSSSSSSKR 119
           KKKRGRPRKY  DGN+ +   P+ +SSS +S PP  +           +P  +S   SKR
Sbjct: 94  KKKRGRPRKYTPDGNIALGLSPTPISSSATSLPPHVADSGSGVGVGIGTPAIASDPPSKR 153

Query: 120 GRGRPPGSGNWQLLASLGELFANTAGGDFTPHVVTVNTGEDVAGKILSFSQKGPRGICVL 179
            RGRPPGSG  QL     +      G  FTPHV+TV  GED+A KI++FSQ+GPR +C+L
Sbjct: 154 NRGRPPGSGKKQL-----DALGGVGGVGFTPHVITVKAGEDIASKIMAFSQQGPRTVCIL 208

Query: 180 SANGAVSNVTIRQPGSSGGILTYEGRFEILSLSGSFTVTETGGARSRTGGLSVSLAGPDG 239
           SANGA+ NVT+RQP  SGG +TYEGR+EI+SLSGSF ++E  G RSR+GGLSVSLAG DG
Sbjct: 209 SANGAICNVTLRQPAMSGGTVTYEGRYEIISLSGSFLLSENNGNRSRSGGLSVSLAGSDG 268

Query: 240 RVIGGGVAGLLMAASPIQIVVGSFMPNGFKVHKRKH 275
           RV+GGGVAG+LMAASP+Q++VGSF+ +G K +   H
Sbjct: 269 RVLGGGVAGMLMAASPVQVIVGSFIADGKKSNSNIH 304

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356535315|ref|XP_003536192.1| PREDICTED: uncharacterized protein LOC100776862 isoform 1 [Glycine max]

 Score =  230 bits (586), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 128/218 (58%), Positives = 153/218 (70%), Gaps = 7/218 (3%)

Query: 70  GKKKRGRPRKYDSDGNLRVPSVLSSSTSSPPP-GFSLTLSPEFSSSSSSKRGRGRPPGSG 128
           GKKKRGRPRKY  DG    P++ + +  SP P   S+ L+ EFS+    KRGRGRP  S 
Sbjct: 45  GKKKRGRPRKYGPDGK---PALGAVTALSPMPISSSIPLTGEFSAW---KRGRGRPVESI 98

Query: 129 NWQLLASLGELFANTAGGDFTPHVVTVNTGEDVAGKILSFSQKGPRGICVLSANGAVSNV 188
                  LGE  A + G +FTPHV+TVN GEDV  KI+SFSQ+G R IC+LSA G +SNV
Sbjct: 99  KKSSFKFLGEGIAYSVGANFTPHVLTVNAGEDVTMKIMSFSQQGSRAICILSATGTISNV 158

Query: 189 TIRQPGSSGGILTYEGRFEILSLSGSFTVTETGGARSRTGGLSVSLAGPDGRVIGGGVAG 248
           T+RQP S GG LTYEGRFEILSLSGSF  TE G  RSR+GG+SVSLAGPDGRV+GGG+AG
Sbjct: 159 TLRQPSSCGGTLTYEGRFEILSLSGSFMPTENGVTRSRSGGMSVSLAGPDGRVMGGGLAG 218

Query: 249 LLMAASPIQIVVGSFMPNGFKVHKRKHHREQTMPFMSP 286
           LL+AA P+Q+VV SF+P     HK K  R   +  +SP
Sbjct: 219 LLVAAGPVQVVVASFLPGHQLEHKTKKQRVGHVSTISP 256

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	366
TAIR|locus:2118091	356	AHL1 "AT-hook motif nuclear-lo	0.516	0.530	0.566	1.1e-54
TAIR|locus:2126946	318	AT4G00200 [Arabidopsis thalian	0.442	0.509	0.607	7.8e-54
TAIR|locus:2132599	334	AT4G22770 [Arabidopsis thalian	0.489	0.535	0.538	2e-49
TAIR|locus:2051038	351	AT2G33620 [Arabidopsis thalian	0.385	0.401	0.645	1.2e-47
TAIR|locus:2122684	404	AHL3 "AT-HOOK MOTIF NUCLEAR LO	0.426	0.386	0.549	2.6e-47
TAIR|locus:2050766	348	AT2G45850 [Arabidopsis thalian	0.404	0.425	0.567	2.3e-46
TAIR|locus:2153142	419	AHL4 "AT-HOOK MOTIF NUCLEAR LO	0.338	0.295	0.661	2.3e-46
TAIR|locus:2167988	404	AT5G62260 [Arabidopsis thalian	0.549	0.497	0.436	6.7e-45
TAIR|locus:2031321	378	AT1G63470 [Arabidopsis thalian	0.5	0.484	0.487	1.8e-44
TAIR|locus:2098861	354	AT3G61310 [Arabidopsis thalian	0.464	0.480	0.485	4.1e-43

TAIR|locus:2118091 AHL1 "AT-hook motif nuclear-localized protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 516 (186.7 bits), Expect = 1.1e-54, Sum P(2) = 1.1e-54
 Identities = 111/196 (56%), Positives = 138/196 (70%)

Query:   135 SLGELFANTAGGDFTPHVVTVNTGEDVAGKILSFSQKGPRGICVLSANGAVSNVTIRQPG 194
             +LGE    + GG+FTPH++TVNTGEDV  KI+SFSQ+GPR ICVLSANG +S+VT+RQP 
Sbjct:   157 NLGEWAPCSVGGNFTPHIITVNTGEDVTMKIISFSQQGPRSICVLSANGVISSVTLRQPD 216

Query:   195 SSGGILTYEGRFEILSLSGSFTVTETGGARSRTGGLSVSLAGPDGRVIGGGVAGLLMAAS 254
             SSGG LTYEGRFEILSLSGSF   ++GG RSRTGG+SVSLA PDGRV+GGG+AGLL+AAS
Sbjct:   217 SSGGTLTYEGRFEILSLSGSFMPNDSGGTRSRTGGMSVSLASPDGRVVGGGLAGLLVAAS 276

Query:   255 PIQIVVGSFMPN-GFKVHKRKHHREQTMPFMSPGGAPETLAAA--RPISQVN--P-EKET 308
             P+Q+VVGSF+     +  K K ++   M   SP  A    +AA  R I  V+  P    T
Sbjct:   277 PVQVVVGSFLAGTDHQDQKPKKNKHDFM-LSSPTAAIPISSAADHRTIHSVSSLPVNNNT 335

Query:   309 SLTPITPVPRQSQAEV 324
               T +   PR    ++
Sbjct:   336 WQTSLASDPRNKHTDI 351

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0016132 "brassinosteroid biosynthetic process" evidence=RCA

TAIR|locus:2126946 AT4G00200 [Arabidopsis thaliana (taxid:3702)]

 Score = 502 (181.8 bits), Expect = 7.8e-54, Sum P(2) = 7.8e-54
 Identities = 102/168 (60%), Positives = 130/168 (77%)

Query:   145 GGDFTPHVVTVNTGEDVAGKILSFSQKGPRGICVLSANGAVSNVTIRQPGSSGGILTYEG 204
             G +FTPHV+TVNTGED+  +I+SFSQ+GPR IC+LSANG +SNVT+RQP S GG LTYEG
Sbjct:   120 GSNFTPHVITVNTGEDITMRIISFSQQGPRAICILSANGVISNVTLRQPDSCGGTLTYEG 179

Query:   205 RFEILSLSGSFTVTETGGARSRTGGLSVSLAGPDGRVIGGGVAGLLMAASPIQIVVGSFM 264
             RFEILSLSGSF  TE  G++ R+GG+SVSLAGPDGRV+GGGVAGLL+AA+PIQ+VVGSF+
Sbjct:   180 RFEILSLSGSFMETENQGSKGRSGGMSVSLAGPDGRVVGGGVAGLLIAATPIQVVVGSFI 239

Query:   265 PNGFKVHKR-KHHREQTMP--FMS--PGGAPETLAAARPISQVNPEKE 307
              +  + H++ +  R +  P   MS  P  +P   AA+   S  NP++E
Sbjct:   240 TSDQQDHQKPRKQRVEHAPAAVMSVPPPPSPPPPAAS-VFSPTNPDRE 286

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2132599 AT4G22770 [Arabidopsis thaliana (taxid:3702)]

 Score = 470 (170.5 bits), Expect = 2.0e-49, Sum P(2) = 2.0e-49
 Identities = 99/184 (53%), Positives = 128/184 (69%)

Query:   135 SLGELFANTAGGDFTPHVVTVNTGEDVAGKILSFSQKGPRGICVLSANGAVSNVTIRQPG 194
             +LGE   ++A  +FTPH++TVN GEDV  +I+SFSQ+G   ICVL ANG VS+VT+RQP 
Sbjct:   137 NLGEWSPSSAAANFTPHIITVNAGEDVTKRIISFSQQGSLAICVLCANGVVSSVTLRQPD 196

Query:   195 SSGGILTYEGRFEILSLSGSFTVTETGGARSRTGGLSVSLAGPDGRVIGGGVAGLLMAAS 254
             SSGG LTYEGRFEILSLSG+F  +++ G RSRTGG+SVSLA PDGRV+GGGVAGLL+AA+
Sbjct:   197 SSGGTLTYEGRFEILSLSGTFMPSDSDGTRSRTGGMSVSLASPDGRVVGGGVAGLLVAAT 256

Query:   255 PIQIVVGSFM--PNGFKVHKRKH-HREQTMPFMSPGGAPETLAAARPISQVNPEKETSLT 311
             PIQ+VVG+F+   N  +   + H H   + P M            RP++   P   ++ T
Sbjct:   257 PIQVVVGTFLGGTNQQEQTPKPHNHNFMSSPLMPTSSNVADHRTIRPMTSSLPI--STWT 314

Query:   312 PITP 315
             P  P
Sbjct:   315 PSFP 318

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

TAIR|locus:2051038 AT2G33620 [Arabidopsis thaliana (taxid:3702)]

 Score = 459 (166.6 bits), Expect = 1.2e-47, Sum P(2) = 1.2e-47
 Identities = 93/144 (64%), Positives = 112/144 (77%)

Query:   143 TAGGDFTPHVVTVNTGEDVAGKILSFSQKGPRGICVLSANGAVSNVTIRQPGSSGGILTY 202
             + G  FTPHV+TV  GEDV+ KI++ +  GPR +CVLSANGA+SNVT+RQ  +SGG +TY
Sbjct:   158 STGIGFTPHVLTVLAGEDVSSKIMALTHNGPRAVCVLSANGAISNVTLRQSATSGGTVTY 217

Query:   203 EGRFEILSLSGSFTVTETGGARSRTGGLSVSLAGPDGRVIGGGVAGLLMAASPIQIVVGS 262
             EGRFEILSLSGSF + E  G RSRTGGLSVSL+ PDG V+GG VAGLL+AASP+QIVVGS
Sbjct:   218 EGRFEILSLSGSFHLLENNGQRSRTGGLSVSLSSPDGNVLGGSVAGLLIAASPVQIVVGS 277

Query:   263 FMPNGFKVHKRKHHREQTMPFMSP 286
             F+P+G K  + K H  Q M   SP
Sbjct:   278 FLPDGEK--EPKQHVGQ-MGLSSP 298

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005829 "cytosol" evidence=IDA

GO:0007389 "pattern specification process" evidence=RCA

GO:0048438 "floral whorl development" evidence=RCA

GO:0048439 "flower morphogenesis" evidence=RCA

TAIR|locus:2122684 AHL3 "AT-HOOK MOTIF NUCLEAR LOCALIZED PROTEIN 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 441 (160.3 bits), Expect = 2.6e-47, Sum P(2) = 2.6e-47
 Identities = 89/162 (54%), Positives = 120/162 (74%)

Query:   133 LASLGELFANTAGGDFTPHVVTVNTGEDVAGKILSFSQKGPRGICVLSANGAVSNVTIRQ 192
             LA +G   A+  G +FTPHV+ VN GEDV  KI++FSQ+G R IC+LSANG +SNVT+RQ
Sbjct:   153 LAGVGT--ADFVGANFTPHVLIVNAGEDVTMKIMTFSQQGSRAICILSANGPISNVTLRQ 210

Query:   193 PGSSGGILTYEGRFEILSLSGSFTVTETGGARSRTGGLSVSLAGPDGRVIGGGVAGLLMA 252
               +SGG LTYEGRFEILSL+GSF   ++GG RSR GG+SV LAGPDGRV GGG+AGL +A
Sbjct:   211 SMTSGGTLTYEGRFEILSLTGSFMQNDSGGTRSRAGGMSVCLAGPDGRVFGGGLAGLFLA 270

Query:   253 ASPIQIVVGSFMPNGFKVHKRKHHREQTMPFMSPGGAPETLA 294
             A P+Q++VG+F+  G +  + +  +E+ + F   G  P +++
Sbjct:   271 AGPVQVMVGTFIA-GQEQSQLELAKERRLRF---GAQPSSIS 308

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0010089 "xylem development" evidence=IMP

TAIR|locus:2050766 AT2G45850 [Arabidopsis thaliana (taxid:3702)]

 Score = 438 (159.2 bits), Expect = 2.3e-46, Sum P(2) = 2.3e-46
 Identities = 84/148 (56%), Positives = 111/148 (75%)

Query:   131 QLLASLGELFANTAGGDFTPHVVTVNTGEDVAGKILSFSQKGPRGICVLSANGAVSNVTI 190
             Q +AS+GEL  +++G  FTPHV+ V+ GED+A K+++FSQ+GPR ICVLSA+GAVS  T+
Sbjct:   145 QRMASVGELMPSSSGMSFTPHVIAVSIGEDIASKVIAFSQQGPRAICVLSASGAVSTATL 204

Query:   191 RQPGSSGGILTYEGRFEILSLSGSFTVTETGGARSRTGGLSVSLAGPDGRVIGGGVAGLL 250
              QP +S G + YEGRFEIL+LS S+ V   G  R+RTG LSVSLA PDGRVIGG + G L
Sbjct:   205 IQPSASPGAIKYEGRFEILALSTSYIVATDGSFRNRTGNLSVSLASPDGRVIGGAIGGPL 264

Query:   251 MAASPIQIVVGSFMPNGFKVHKRKHHRE 278
             +AASP+Q++VGSF+    K+  +K   E
Sbjct:   265 IAASPVQVIVGSFIWAAPKIKSKKREEE 292

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008150 "biological_process" evidence=ND

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

TAIR|locus:2153142 AHL4 "AT-HOOK MOTIF NUCLEAR LOCALIZED PROTEIN 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 431 (156.8 bits), Expect = 2.3e-46, Sum P(2) = 2.3e-46
 Identities = 82/124 (66%), Positives = 100/124 (80%)

Query:   141 ANTAGGDFTPHVVTVNTGEDVAGKILSFSQKGPRGICVLSANGAVSNVTIRQPGSSGGIL 200
             A      FTPHV+TVN GEDV  KI++FSQ+G R IC+LSANG +SNVT+RQ  +SGG L
Sbjct:   171 AEIVSPSFTPHVLTVNAGEDVTMKIMTFSQQGSRAICILSANGPISNVTLRQSMTSGGTL 230

Query:   201 TYEGRFEILSLSGSFTVTETGGARSRTGGLSVSLAGPDGRVIGGGVAGLLMAASPIQIVV 260
             TYEG FEILSL+GSF  +E+GG RSR GG+SVSLAG DGRV GGG+AGL +AA P+Q++V
Sbjct:   231 TYEGHFEILSLTGSFIPSESGGTRSRAGGMSVSLAGQDGRVFGGGLAGLFIAAGPVQVMV 290

Query:   261 GSFM 264
             GSF+
Sbjct:   291 GSFI 294

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008283 "cell proliferation" evidence=RCA

GO:0005515 "protein binding" evidence=IPI

GO:0010089 "xylem development" evidence=IMP

TAIR|locus:2167988 AT5G62260 [Arabidopsis thaliana (taxid:3702)]

 Score = 420 (152.9 bits), Expect = 6.7e-45, Sum P(2) = 6.7e-45
 Identities = 89/204 (43%), Positives = 124/204 (60%)

Query:   145 GGDFTPHVVTVNTGEDVAGKILSFSQKGPRGICVLSANGAVSNVTIRQPGSSGGILTYEG 204
             G +FT H  TVN GEDV  K++ +SQ+G R IC+LSA G++SNVT+ QP ++GG LTYEG
Sbjct:   157 GANFTTHQFTVNGGEDVTMKVMPYSQQGSRAICILSATGSISNVTLGQPTNAGGTLTYEG 216

Query:   205 RFEILSLSGSFTVTETGGARSRTGGLSVSLAGPDGRVIGGGVAGLLMAASPIQIVVGSF- 263
             RFEILSLSGSF  TE GG + R GG+S+SLAGP+G + GGG+AG+L+AA P+Q+V+GSF 
Sbjct:   217 RFEILSLSGSFMPTENGGTKGRAGGMSISLAGPNGNIFGGGLAGMLIAAGPVQVVMGSFI 276

Query:   264 -MPNGFKVHKRKHHREQTMPFMSPGGAPETLAAARPISQVNPEKETSLTPITPVPRQSQA 322
              M    +  K+K    +      P   P+      P   +     TS +  T   ++ QA
Sbjct:   277 VMHQAEQNQKKKPRVMEAFAPPQPQAPPQLQQQQPPTFTITTVNSTSPSVNTVEEQKPQA 336

Query:   323 EVGN-AENSKQVPNPTTSQSAGWN 345
               G       Q+P+   + ++  N
Sbjct:   337 YGGGIVRPMAQMPSSFQNDNSTMN 360

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

TAIR|locus:2031321 AT1G63470 [Arabidopsis thaliana (taxid:3702)]

 Score = 421 (153.3 bits), Expect = 1.8e-44, Sum P(2) = 1.8e-44
 Identities = 96/197 (48%), Positives = 130/197 (65%)

Query:   131 QLLASLGELFANTAGGDFTPHVVTVNTGEDVAGKILSFSQKGPRGICVLSANGAVSNVTI 190
             Q LA+LGE    +AG  F PHV++V +GED+  K+LSFSQK PR +C++S  G VS+VT+
Sbjct:   160 QRLANLGEWMNTSAGLAFAPHVISVGSGEDIVSKVLSFSQKRPRALCIMSGTGTVSSVTL 219

Query:   191 RQPGSSGGILTYEGRFEILSLSGSFTVTETGGARSRTGGLSVSLAGPDGRVIGGGVAGLL 250
             R+P S+   LT+EGRFEILSL GS+ V E GG++SRTGGLSVSL+GP+G VIGGG+ G+L
Sbjct:   220 REPASTTPSLTFEGRFEILSLGGSYLVNEEGGSKSRTGGLSVSLSGPEGHVIGGGI-GML 278

Query:   251 MAASPIQIVVGSFM--------PNGFKVHKR--KHHREQTMPFM--SPGGAPETLAAARP 298
             +AAS +Q+V  SF+         N  K  K+  K  +E T   M  +PG APE  A+   
Sbjct:   279 IAASLVQVVACSFVYGASAKSNNNNNKTIKQEIKPKQEPTNSEMETTPGSAPEAAASTGQ 338

Query:   299 ISQVN-PEKETSLTPIT 314
              +  N P +  S  P++
Sbjct:   339 HTPQNFPAQGMSGWPVS 355

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0000226 "microtubule cytoskeleton organization" evidence=RCA

GO:0000280 "nuclear division" evidence=RCA

GO:0000911 "cytokinesis by cell plate formation" evidence=RCA

GO:0006260 "DNA replication" evidence=RCA

GO:0006306 "DNA methylation" evidence=RCA

GO:0006342 "chromatin silencing" evidence=RCA

GO:0006346 "methylation-dependent chromatin silencing" evidence=RCA

GO:0007000 "nucleolus organization" evidence=RCA

GO:0007267 "cell-cell signaling" evidence=RCA

GO:0008283 "cell proliferation" evidence=RCA

GO:0009616 "virus induced gene silencing" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0010267 "production of ta-siRNAs involved in RNA interference" evidence=RCA

GO:0016246 "RNA interference" evidence=RCA

GO:0016458 "gene silencing" evidence=RCA

GO:0016570 "histone modification" evidence=RCA

GO:0016571 "histone methylation" evidence=RCA

GO:0016572 "histone phosphorylation" evidence=RCA

GO:0031047 "gene silencing by RNA" evidence=RCA

GO:0031048 "chromatin silencing by small RNA" evidence=RCA

GO:0034968 "histone lysine methylation" evidence=RCA

GO:0035196 "production of miRNAs involved in gene silencing by miRNA" evidence=RCA

GO:0048449 "floral organ formation" evidence=RCA

GO:0051225 "spindle assembly" evidence=RCA

GO:0051567 "histone H3-K9 methylation" evidence=RCA

TAIR|locus:2098861 AT3G61310 [Arabidopsis thaliana (taxid:3702)]

 Score = 408 (148.7 bits), Expect = 4.1e-43, Sum P(2) = 4.1e-43
 Identities = 85/175 (48%), Positives = 115/175 (65%)

Query:   131 QLLASLGELFANTAGGDFTPHVVTVNTGEDVAGKILSFSQKGPRGICVLSANGAVSNVTI 190
             Q L+S+GE+  ++ G  FTPHV+ V+ GED+A K++SFS +GPR ICVLSA+GAVS  T+
Sbjct:   147 QRLSSIGEMMPSSTGMSFTPHVIVVSIGEDIASKVISFSHQGPRAICVLSASGAVSTATL 206

Query:   191 RQPGSSGGILTYEGRFEILSLSGSFTVTETGGARSRTGGLSVSLAGPDGRVIGGGVAGLL 250
              QP  S G + YEG FE++SLS S+  T      +RTG L+VSLA PDGRVIGGG+ G L
Sbjct:   207 LQPAPSHGTIIYEGLFELISLSTSYLNTTDNDYPNRTGSLAVSLASPDGRVIGGGIGGPL 266

Query:   251 MAASPIQIVVGSFM---PNGFKVHKRKHHREQTMPFMS-PGGAPETLAAARPISQ 301
             +AAS +Q++VGSF+   P G K+ KR+   E      +       T A + P+ Q
Sbjct:   267 IAASQVQVIVGSFIWAIPKG-KIKKREETSEDVQDTDALENNNDNTAATSPPVPQ 320

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00021691001 SubName- Full=Chromosome chr8 scaffold_23, whole genome shotgun sequence; (326 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	366
pfam03479	120	pfam03479, DUF296, Domain of unknown function (DUF	9e-39
cd11378	113	cd11378, DUF296, Domain of unknown function found	4e-35
COG1661	141	COG1661, COG1661, Predicted DNA-binding protein wi	6e-05

>gnl|CDD|217587 pfam03479, DUF296, Domain of unknown function (DUF296)

 Score =  134 bits (339), Expect = 9e-39
 Identities = 52/122 (42%), Positives = 72/122 (59%), Gaps = 9/122 (7%)

Query: 148 FTPHVVTVNTGEDVAGKILSFSQKGPRGICVLSANGAVSNVTIRQPG---SSGGILTYEG 204
             PHV+ +  GED+   + +F+++   G  VLS  GAVSNVT+RQP     S G++T EG
Sbjct: 1   GRPHVLRLEPGEDLVESLEAFARQRGIGAAVLSGIGAVSNVTLRQPDEEAKSYGVVTLEG 60

Query: 205 RFEILSLSGSFTVTETGGARSRTGGLSVSLAGPDGRVIGGGVA-GLLMAASPIQIVVGSF 263
           RFEILSLSG+ +          +G L VSLA PDG+V+GG +A G + A   + +   SF
Sbjct: 61  RFEILSLSGTISP-----GGKPSGHLHVSLADPDGQVVGGHLAEGTVFATGEVVVTELSF 115

Query: 264 MP 265
             
Sbjct: 116 EN 117

This putative domain is found in proteins that contain AT-hook motifs pfam02178, which strongly suggests a DNA-binding function for the proteins as a whole. There are three highly conserved histidine residues, eg at 117, 119 and 133 in Reut_B5223, which should be a structurally conserved metal-binding unit, based on structural comparison with known metal-binding structures. The proteins should work as trimers. Length = 120

>gnl|CDD|211390 cd11378, DUF296, Domain of unknown function found in archaea, bacteria, and plants

 Score =  124 bits (313), Expect = 4e-35
 Identities = 46/118 (38%), Positives = 66/118 (55%), Gaps = 8/118 (6%)

Query: 149 TPHVVTVNTGEDVAGKILSFSQKGPRGICVLSANGAVSNVTIRQPGS---SGGILTYEGR 205
            P V+ +  GED+   + +F+++      VLS  GAVSN T+R P         +T+EGR
Sbjct: 1   RPFVLRLEPGEDLVESLEAFAREEGIKAAVLSGIGAVSNATLRYPDPEPKEYETVTFEGR 60

Query: 206 FEILSLSGSFTVTETGGARSRTGGLSVSLAGPDGRVIGGGVAGLLMAASPIQIVVGSF 263
            EILSLSG+ +  +       +G L VSLA  DGRVIGG + G L  A  +++V+G  
Sbjct: 61  LEILSLSGNISPDDGK----PSGHLHVSLADSDGRVIGGHLLGAL-VAGTVEVVIGEL 113

This domain is found in proteins that contain AT-hook motifs, which suggests a role in DNA-binding for the proteins as a whole. Three conserved histidine residues appear to form a zinc-binding site, and the domain has been observed to form homotrimers. It co-occurs with a thioredoxin-like domain in uncharacterized cyanobacterial proteins. Length = 113

>gnl|CDD|224575 COG1661, COG1661, Predicted DNA-binding protein with PD1-like DNA-binding motif [General function prediction only]

 Score = 42.3 bits (100), Expect = 6e-05
 Identities = 19/96 (19%), Positives = 40/96 (41%), Gaps = 9/96 (9%)

Query: 152 VVTVNTGEDVAGKILSFSQKGPRGICVLSANGAVSNVTIR---QPGSSGGILTYEGRFEI 208
            + ++ GED+  ++ +F+++      V++A GA+ +  +R           +      E+
Sbjct: 13  ALRLDPGEDLFSELEAFAEQEDIHAAVVTAIGALRDAKLRYFDPEEKEYETIPVNEPLEV 72

Query: 209 LSLSGSFTVTETGGARSRTGGLSVSLAGPDGRVIGG 244
           LSL G   +            L  +L   +G  +GG
Sbjct: 73  LSLLG--NIALDDPFVH----LHAALGDENGITLGG 102

Length = 141

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	366
PF03479	120	DUF296: Domain of unknown function (DUF296); Inter	99.95
COG1661	141	Predicted DNA-binding protein with PD1-like DNA-bi	99.92
PF02178	13	AT_hook: AT hook motif; InterPro: IPR017956 AT hoo	96.37
smart00384	26	AT_hook DNA binding domain with preference for A/T	96.37
PF14621	219	RFX5_DNA_bdg: RFX5 DNA-binding domain	84.26

>PF03479 DUF296: Domain of unknown function (DUF296); InterPro: IPR005175 This putative conserved domain is found in proteins that contain AT-hook motifs IPR000637 from INTERPRO, suggesting a DNA-binding function for the proteins as a whole, however, the function of this domain is unknown

Probab=99.95  E-value=1.6e-28  Score=208.43  Aligned_cols=118  Identities=29%  Similarity=0.397  Sum_probs=104.1

Q ss_pred             ceeEEEEEcCCCCHHHHHHHHHhhCCccEEEEEeeceeeeEEEecCCC--CCCceeeeeceeEEEeeeceeecCCCCCCC
Q 038197          148 FTPHVVTVNTGEDVAGKILSFSQKGPRGICVLSANGAVSNVTIRQPGS--SGGILTYEGRFEILSLSGSFTVTETGGARS  225 (366)
Q Consensus       148 ~~phVIrV~~GEDIvesI~~Faq~~~ra~cILSAiGAVsnVTLrq~~~--s~~~~t~eG~FEILSLSGnis~~~~gg~~~  225 (366)
                      ||+|++||++||||+++|.+||++..+.+|+|+++|+|++|+|++++.  ....++|+|+|||+||+|||...++    +
T Consensus         1 ~r~~~~rl~~Gedl~~~l~~~~~~~~i~~~~is~iGsl~~~~l~~~~~~~~~~~~~~~g~~Ei~sl~G~i~~~~g----~   76 (120)
T PF03479_consen    1 GRVFVIRLDPGEDLLESLEAFAREHGIRSGVISGIGSLSNVTLGYYDPPSYYEPLEFEGPFEIISLSGTISPEDG----K   76 (120)
T ss_dssp             EEEEEEEEETTSBHHHHHHHHHHHHT-SSEEEEEEEEEEEEEEEEEETTTEEEEEEEESEEEEEEEEEEEEEETT----E
T ss_pred             CcEEEEEECCCCHHHHHHHHHHHHCCCcEEEEEEEeEEeEEEEEEecccCCcceEEecccEEEEEeEEEEECCCC----C
Confidence            689999999999999999999999889889999999999999999954  2347899999999999999998442    6


Q ss_pred             CCCeeEEEEeCCCCcEEeeecCCccEEecceEEEEEEcCCCcccc
Q 038197          226 RTGGLSVSLAGPDGRVIGGGVAGLLMAASPIQIVVGSFMPNGFKV  270 (366)
Q Consensus       226 ~~~HLHVSLA~~dGqViGGHL~g~LIAasTVEVVV~sF~~~~~kr  270 (366)
                      ++.|||++|++.||+++||||..+.+ ..++||+|..+....++|
T Consensus        77 ~~~HlHisl~~~~g~v~gGHl~~g~v-~~t~Ev~i~~~~~~~~~~  120 (120)
T PF03479_consen   77 PFVHLHISLADPDGQVFGGHLLEGTV-FATAEVVITELSGINFTR  120 (120)
T ss_dssp             EEEEEEEEEE-TTSEEEEEEEEEEEE-EEEEEEEEEEETTEEEEE
T ss_pred             CcceEEEEEECCCCeEEeeEeCCCEE-eEEEEEEEEEecCccccC
Confidence            88999999999999999999997766 678999999998876665

Overexpression of a protein containing this domain, Q9S7C9 from SWISSPROT, in Arabidopsis thaliana causes late flowering and modified leaf development []. ; PDB: 2DT4_A 2P6Y_A 3HWU_A 3HTN_A 2NMU_A 2H6L_A 2HX0_A.

>COG1661 Predicted DNA-binding protein with PD1-like DNA-binding motif [General function prediction only]

Probab=99.92  E-value=8.9e-25  Score=192.61  Aligned_cols=122  Identities=16%  Similarity=0.249  Sum_probs=112.1

Q ss_pred             CCceeEEEEEcCCCCHHHHHHHHHhhCCccEEEEEeeceeeeEEEecCCCCC---CceeeeeceeEEEeeeceeecCCCC
Q 038197          146 GDFTPHVVTVNTGEDVAGKILSFSQKGPRGICVLSANGAVSNVTIRQPGSSG---GILTYEGRFEILSLSGSFTVTETGG  222 (366)
Q Consensus       146 ~~~~phVIrV~~GEDIvesI~~Faq~~~ra~cILSAiGAVsnVTLrq~~~s~---~~~t~eG~FEILSLSGnis~~~~gg  222 (366)
                      ..-+.|++||++|||+++.|.+||+++.+.+++++|+|++++++|+|++...   .++++.|+||||||.|||..++   
T Consensus         7 ~~gr~~~~Rld~G~d~~~~l~~~a~~~~i~aa~v~~iGal~~~~l~~~~~~~~~y~~~~~~e~~EvlSL~G~i~~~~---   83 (141)
T COG1661           7 SSGRVIALRLDPGEDLFSELEAFAEQEDIHAAVVTAIGALRDAKLRYFDPEEKEYETIPVNEPLEVLSLLGNIALDD---   83 (141)
T ss_pred             ccceEEEEEeCCCccHHHHHHHHHHhcCceEEEEEEeeeeeeeEEEEecCCCCceEEEecCCcEEEEEecceeecCC---
Confidence            3457899999999999999999999999988999999999999999999665   3789999999999999999986   


Q ss_pred             CCCCCCeeEEEEeCCCCcEEeeecCCccEEecceEEEEEEcCCCcccccccc
Q 038197          223 ARSRTGGLSVSLAGPDGRVIGGGVAGLLMAASPIQIVVGSFMPNGFKVHKRK  274 (366)
Q Consensus       223 ~~~~~~HLHVSLA~~dGqViGGHL~g~LIAasTVEVVV~sF~~~~~kr~~~k  274 (366)
                         |+.|||++|++++|+++||||.++.+.. ++||+|.++....+.|..+.
T Consensus        84 ---p~~HlHa~l~~~~G~~~GGHL~~~~V~~-t~Ev~I~el~~~~~~R~~d~  131 (141)
T COG1661          84 ---PFVHLHAALGDENGITLGGHLLEGEVFP-TAEVFIRELPGELFRREFDP  131 (141)
T ss_pred             ---CcEEEEEEEecCCCcEEeeeecccEEeE-EEEEEEEEccccceeEecCC
Confidence               6899999999999999999999997655 99999999999988887765

>PF02178 AT_hook: AT hook motif; InterPro: IPR017956 AT hooks are DNA-binding motifs with a preference for A/T rich regions

Probab=96.37  E-value=0.0012  Score=37.21  Aligned_cols=12  Identities=67%  Similarity=1.082  Sum_probs=4.6

Q ss_pred             cccCCCCCCCCC
Q 038197           71 KKKRGRPRKYDS   82 (366)
Q Consensus        71 KKKRGRPRKY~p   82 (366)
                      +|+||||+|+..
T Consensus         1 ~r~RGRP~k~~~   12 (13)
T PF02178_consen    1 KRKRGRPRKNAK   12 (13)
T ss_dssp             S--SS--TT---
T ss_pred             CCcCCCCccccC
Confidence            689999999865

These motifs are found in a variety of proteins, including the high mobility group (HMG) proteins [], in DNA-binding proteins from plants [] and in hBRG1 protein, a central ATPase of the human switching/sucrose non-fermenting (SWI/SNF) remodeling complex []. High mobility group (HMG) proteins are a family of relatively low molecular weight non-histone components in chromatin []. HMG-I and HMG-Y (HMGA) are proteins of about 100 amino acid residues which are produced by the alternative splicing of a single gene. HMG-I/Y proteins bind preferentially to the minor groove of AT-rich regions in double-stranded DNA in a non-sequence specific manner [, ]. It is suggested that these proteins could function in nucleosome phasing and in the 3' end processing of mRNA transcripts. They are also involved in the transcription regulation of genes containing, or in close proximity to, AT-rich regions. ; GO: 0003677 DNA binding; PDB: 2EZE_A 2EZD_A 2EZF_A 2EZG_A.

>smart00384 AT_hook DNA binding domain with preference for A/T rich regions

Probab=96.37  E-value=0.0018  Score=42.84  Aligned_cols=15  Identities=60%  Similarity=0.920  Sum_probs=13.2

Q ss_pred             cccCCCCCCCCCCCC
Q 038197           71 KKKRGRPRKYDSDGN   85 (366)
Q Consensus        71 KKKRGRPRKY~pDg~   85 (366)
                      |||||||||+..+..
T Consensus         1 kRkRGRPrK~~~~~~   15 (26)
T smart00384        1 KRKRGRPRKAPKDXX   15 (26)
T ss_pred             CCCCCCCCCCCCccc
Confidence            699999999998754

Small DNA-binding motif first described in the high mobility group non-histone chromosomal protein HMG-I(Y).

>PF14621 RFX5_DNA_bdg: RFX5 DNA-binding domain

Probab=84.26  E-value=0.35  Score=45.49  Aligned_cols=13  Identities=62%  Similarity=0.897  Sum_probs=10.5

Q ss_pred             cCcccCCCCCCCC
Q 038197           69 FGKKKRGRPRKYD   81 (366)
Q Consensus        69 ~~KKKRGRPRKY~   81 (366)
                      ..|||||||||-.
T Consensus        66 dAKRKRGRPRKKs   78 (219)
T PF14621_consen   66 DAKRKRGRPRKKS   78 (219)
T ss_pred             hhhhhcCCCccCC
Confidence            3699999999643

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	366
2hx0_A	154	Putative DNA-binding protein; NESG, PSI-2, SCR59,	1e-26
2p6y_A	142	Hypothetical protein VCA0587; NESG, Q9KM02_vibch,	2e-26
2dt4_A	143	Hypothetical protein PH0802; PPC domain, structura	3e-17
2h6l_A	146	Hypothetical protein; NESG GR103, structural genom	1e-08
3htn_A	149	Putative DNA binding protein; DUF269 family protei	1e-08
3hwu_A	147	Putative DNA-binding protein; YP_299413.1, structu	6e-08

>2hx0_A Putative DNA-binding protein; NESG, PSI-2, SCR59, structural genomics, protein structure initiative; 1.55A {Salmonella choleraesuis} SCOP: d.290.1.3 PDB: 2nmu_A Length = 154

 Score =  102 bits (256), Expect = 1e-26
 Identities = 24/127 (18%), Positives = 57/127 (44%), Gaps = 10/127 (7%)

Query: 144 AGGDFTPHVVTVNTGEDVAGKILSFSQK-GPRGICVLSANGAVSNVTIRQPGSSGGILTY 202
                  + + +  G++V  ++ +F Q+   R   +    G++++V +R  G      + 
Sbjct: 14  NASTARFYALRLLPGQEVFSQLHAFVQQNQLRAAWIAGCTGSLTDVALRYAGQ-EATTSL 72

Query: 203 EGRFEILSLSGSFTVTETGGARSRTGGLSVSLAGPDGRVIGGGVAGLLMAASPIQIVVGS 262
            G FE++SL+G+  +T           L ++++ P G ++GG +       + +++V+G 
Sbjct: 73  TGTFEVISLNGTLELTGEH--------LHLAVSDPYGVMLGGHMMPGCTVRTTLELVIGE 124

Query: 263 FMPNGFK 269
                F 
Sbjct: 125 LPALTFS 131

>2p6y_A Hypothetical protein VCA0587; NESG, Q9KM02_vibch, VCR80, structural genomics, PSI-2, prote structure initiative; 1.63A {Vibrio cholerae} Length = 142

 Score =  101 bits (253), Expect = 2e-26
 Identities = 27/115 (23%), Positives = 47/115 (40%), Gaps = 10/115 (8%)

Query: 150 PHVVTVNTGEDVAGKILSF-SQKGPRGICVLSANGAVSNVTIRQPGSSGGILTYEGRFEI 208
              + +  G D+  +I+    Q       + S  G +S + IR   S    L     FEI
Sbjct: 4   LIALRLTRGMDLKQQIVQLVQQHRIHAGSIASCVGCLSTLHIRLADS-VSTLQVSAPFEI 62

Query: 209 LSLSGSFTVTETGGARSRTGGLSVSLAGPDGRVIGGGVAGLLMAASPIQIVVGSF 263
           LSLSG+ T             L +++A   GRV GG +    +  +  ++++  +
Sbjct: 63  LSLSGTLTYQHCH--------LHIAVADAQGRVWGGHLLEGNLINTTAELMIHHY 109

>2dt4_A Hypothetical protein PH0802; PPC domain, structural genomics, unknown function; 1.60A {Pyrococcus horikoshii} Length = 143

 Score = 76.5 bits (188), Expect = 3e-17
 Identities = 22/114 (19%), Positives = 48/114 (42%), Gaps = 7/114 (6%)

Query: 150 PHVVTVNTGEDVAGKILSFSQKGPRGICVLSANGAVSNVTIR---QPGSSGGILTYEGRF 206
            ++  V  GE++   I +F +K      +++  G + N  I    +      ++  +G +
Sbjct: 11  TYLFRVPEGEELLTYIKNFCKKEGIETAIINGIGTLKNPKIGYFLEEKKEYKVIPLKGSY 70

Query: 207 EILSLSGSFTVTETGGARSRTGGLSVSLAGPDGRVIGGGVAGLLMAASPIQIVV 260
           E++SL G+ ++ +            VSL   +G V GG +    +  + I +  
Sbjct: 71  ELISLIGNVSLKDGE----PFVHAHVSLGNEEGIVFGGHLVEGEVFVAEIFLQE 120

>2h6l_A Hypothetical protein; NESG GR103, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.00A {Archaeoglobus fulgidus} SCOP: d.290.1.3 Length = 146

 Score = 52.3 bits (125), Expect = 1e-08
 Identities = 31/140 (22%), Positives = 51/140 (36%), Gaps = 20/140 (14%)

Query: 151 HVVTVNTGEDVAGKILSFSQKGPRGICVLSANGAVSNVTIR---QPGSSGGILTYEGRFE 207
            ++ ++ G+D+  +I  F ++       +SA GAV +  I    Q              E
Sbjct: 12  FLLRLDYGKDLVRQIEEFLEEKGIHAAHISAIGAVRSAVIGYYDQEKKEYVKKELMEPLE 71

Query: 208 ILSLSGSFTVTETGGARSRTGGLSVSLAGPDGRVIGGGVAGLLMAASPIQIVVGSFMPN- 266
           ILSLSG+ +  +          + V L G DG V GG +    + A   ++ V       
Sbjct: 72  ILSLSGNVS-MKDSKPFCH---IHVLL-GKDGEVYGGHLFSAEVFA--CEVFVLPLSGEA 124

Query: 267 ---------GFKVHKRKHHR 277
                    G  +    HH 
Sbjct: 125 PERAFDEQTGLFLWLEHHHH 144

>3htn_A Putative DNA binding protein; DUF269 family protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE 1PE; 1.50A {Bacteroides thetaiotaomicron vpi-5482} Length = 149

 Score = 52.3 bits (125), Expect = 1e-08
 Identities = 15/97 (15%), Positives = 41/97 (42%), Gaps = 7/97 (7%)

Query: 151 HVVTVNTGEDVAGKILSFSQKGPRGICVLSANGAVSNVTIR---QPGSSGGILTYEGRFE 207
           ++V++N   ++   + +F ++       ++  GA+  +T+R       +    T+  + E
Sbjct: 18  YIVSINNHTEIVKALNAFCKEKGILSGSINGIGAIGELTLRFFNPKTKAYDDKTFREQME 77

Query: 208 ILSLSGSFTVTETGGARSRTGGLSVSLAGPDGRVIGG 244
           I +L+G+ +             L +++   D   + G
Sbjct: 78  ISNLTGNISSMNEQ----VYLHLHITVGRSDYSALAG 110

>3hwu_A Putative DNA-binding protein; YP_299413.1, structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.30A {Ralstonia eutropha} Length = 147

 Score = 50.3 bits (120), Expect = 6e-08
 Identities = 18/117 (15%), Positives = 39/117 (33%), Gaps = 6/117 (5%)

Query: 149 TPHVVTVNTGEDVAGKILSFSQKGPRGICVLSANGAVSNVTIR--QPGSSGGILTYEGRF 206
           T +++ +  G++V   +   ++            G +S  T      G            
Sbjct: 13  TGYLMVLRHGDNVLQNLEQLARDEHIPSASFVGIGFMSEATFGFYDFGRKQFDPKTYRNV 72

Query: 207 EILSLSGSFTVTETGGARSRTGGLSVSLAGPDGRVIGGGVAGLLMAASPIQIVVGSF 263
           E+ +++GS    E G           ++     +  GG + GL +     +I V  +
Sbjct: 73  EMANMTGSIAWKE-GKPSIH---AHGTVTDGTFQGAGGHLLGLTVGTGSCEITVTVY 125

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	366
2hx0_A	154	Putative DNA-binding protein; NESG, PSI-2, SCR59,	99.95
2p6y_A	142	Hypothetical protein VCA0587; NESG, Q9KM02_vibch,	99.95
2dt4_A	143	Hypothetical protein PH0802; PPC domain, structura	99.95
3htn_A	149	Putative DNA binding protein; DUF269 family protei	99.95
2h6l_A	146	Hypothetical protein; NESG GR103, structural genom	99.94
3hwu_A	147	Putative DNA-binding protein; YP_299413.1, structu	99.92
2ezd_A	26	High mobility group protein HMG-I/HMG-Y; DNA bindi	96.64

>2hx0_A Putative DNA-binding protein; NESG, PSI-2, SCR59, structural genomics, protein structure initiative; 1.55A {Salmonella choleraesuis} SCOP: d.290.1.3 PDB: 2nmu_A

Probab=99.95  E-value=2.2e-27  Score=208.61  Aligned_cols=123  Identities=20%  Similarity=0.386  Sum_probs=112.2

Q ss_pred             cCCCCceeEEEEEcCCCCHHHHHHHHHhh-CCccEEEEEeeceeeeEEEecCCCCCCceeeeeceeEEEeeeceeecCCC
Q 038197          143 TAGGDFTPHVVTVNTGEDVAGKILSFSQK-GPRGICVLSANGAVSNVTIRQPGSSGGILTYEGRFEILSLSGSFTVTETG  221 (366)
Q Consensus       143 ~~g~~~~phVIrV~~GEDIvesI~~Faq~-~~ra~cILSAiGAVsnVTLrq~~~s~~~~t~eG~FEILSLSGnis~~~~g  221 (366)
                      +.+..+++|++||++||||+++|.+||++ +.+++||++++|+|++++|||++... +++|+|+|||+||+|+|++.   
T Consensus        13 ~~~~~~r~~vlrL~~Gedl~~~i~~~~~~~gi~~a~v~s~iGsl~~~~l~~~~~~~-~~~~~g~~EIlsl~Gti~~~---   88 (154)
T 2hx0_A           13 HNASTARFYALRLLPGQEVFSQLHAFVQQNQLRAAWIAGCTGSLTDVALRYAGQEA-TTSLTGTFEVISLNGTLELT---   88 (154)
T ss_dssp             CSCCCCEEEEEEECTTCBHHHHHHHHHHHHTCSSEEEEEEEEEEEEEEEECTTCSS-CEEEEEEEEEEEEEEEEETT---
T ss_pred             CCCCCccEEEEEECCCCcHHHHHHHHHHHhCCCEEEEEEeEeeeEEeEEEccCCCc-cEecCCcEEEEEeeeeEeCC---
Confidence            55678999999999999999999999987 66688999999999999999999876 78999999999999999985   


Q ss_pred             CCCCCCCeeEEEEeCCCCcEEeeecCCccEEecceEEEEEEcCCCcccccccc
Q 038197          222 GARSRTGGLSVSLAGPDGRVIGGGVAGLLMAASPIQIVVGSFMPNGFKVHKRK  274 (366)
Q Consensus       222 g~~~~~~HLHVSLA~~dGqViGGHL~g~LIAasTVEVVV~sF~~~~~kr~~~k  274 (366)
                           ..|||++|+|.||+++||||++++++..++||+|..|....++|.++.
T Consensus        89 -----~~HlHisl~~~~G~v~GGHL~~g~~V~~t~Ev~i~~~~~~~~~R~~D~  136 (154)
T 2hx0_A           89 -----GEHLHLAVSDPYGVMLGGHMMPGCTVRTTLELVIGELPALTFSRQPCA  136 (154)
T ss_dssp             -----EEEEEEEEECTTSCEEEEEECTTCEEEEEEEEEEEECTTEEEEEEECT
T ss_pred             -----CCEEEEEEECCCCCEEccccCCCCcEEEEEEEEEEEccCceEEEecCC
Confidence                 289999999999999999999877777899999999998889988764

>2p6y_A Hypothetical protein VCA0587; NESG, Q9KM02_vibch, VCR80, structural genomics, PSI-2, prote structure initiative; 1.63A {Vibrio cholerae}

Probab=99.95  E-value=2.4e-27  Score=205.70  Aligned_cols=119  Identities=24%  Similarity=0.332  Sum_probs=107.7

Q ss_pred             CceeEEEEEcCCCCHHHHHHHHHhhC-CccEEEEEeeceeeeEEEecCCCCCCceeeeeceeEEEeeeceeecCCCCCCC
Q 038197          147 DFTPHVVTVNTGEDVAGKILSFSQKG-PRGICVLSANGAVSNVTIRQPGSSGGILTYEGRFEILSLSGSFTVTETGGARS  225 (366)
Q Consensus       147 ~~~phVIrV~~GEDIvesI~~Faq~~-~ra~cILSAiGAVsnVTLrq~~~s~~~~t~eG~FEILSLSGnis~~~~gg~~~  225 (366)
                      .|++|++||++||||+++|.+||++. .+++||++++|++++++||+++... +++|+|+|||+||+|+|++.       
T Consensus         1 ~~r~~~lrL~~Gedl~~~i~~~~~~~~i~~a~v~~~iGsl~~~~l~~~~~~~-~~~~~g~~EIlsl~Gti~~~-------   72 (142)
T 2p6y_A            1 MIHLIALRLTRGMDLKQQIVQLVQQHRIHAGSIASCVGCLSTLHIRLADSVS-TLQVSAPFEILSLSGTLTYQ-------   72 (142)
T ss_dssp             CCEEEEEEECTTCBHHHHHHHHHHHTTCSSEEEEEEEEEEEEEEEECTTSSC-EEEECSCEEEEEEEEEECSS-------
T ss_pred             CCcEEEEEECCCCcHHHHHHHHHHHhCCCEEEEEEeEEEEEeEEEECCCCCc-cEecCCcEEEEEeEEEEeCC-------
Confidence            37899999999999999999999984 5578998999999999999999865 68899999999999999984       


Q ss_pred             CCCeeEEEEeCCCCcEEeeecCCccEEecceEEEEEEcCCCcccccccc
Q 038197          226 RTGGLSVSLAGPDGRVIGGGVAGLLMAASPIQIVVGSFMPNGFKVHKRK  274 (366)
Q Consensus       226 ~~~HLHVSLA~~dGqViGGHL~g~LIAasTVEVVV~sF~~~~~kr~~~k  274 (366)
                       ..|||++|+|.||+++||||+++++++.++||+|..|.+..|+|.++.
T Consensus        73 -~~HlHisl~~~~G~v~GGHl~~g~~V~~t~Ev~i~~~~~~~~~R~~D~  120 (142)
T 2p6y_A           73 -HCHLHIAVADAQGRVWGGHLLEGNLINTTAELMIHHYPQHHFTREFDP  120 (142)
T ss_dssp             -CEEEEEEEECTTSCEEEEEECTTCEECC-EEEEEEECTTEEEEEEEET
T ss_pred             -CCEEEEEEECCCCCEEccccCCCCeEEEEEEEEEEEccCCeEEEeeCC
Confidence             289999999999999999999876778899999999999889998764

>2dt4_A Hypothetical protein PH0802; PPC domain, structural genomics, unknown function; 1.60A {Pyrococcus horikoshii}

Probab=99.95  E-value=7.9e-28  Score=208.20  Aligned_cols=118  Identities=19%  Similarity=0.261  Sum_probs=107.3

Q ss_pred             eeEEEEEcCCCCHHHHHHHHHhhCCccEEEEEeeceeeeEEEecCCCCC---CceeeeeceeEEEeeeceeecCCCCCCC
Q 038197          149 TPHVVTVNTGEDVAGKILSFSQKGPRGICVLSANGAVSNVTIRQPGSSG---GILTYEGRFEILSLSGSFTVTETGGARS  225 (366)
Q Consensus       149 ~phVIrV~~GEDIvesI~~Faq~~~ra~cILSAiGAVsnVTLrq~~~s~---~~~t~eG~FEILSLSGnis~~~~gg~~~  225 (366)
                      ++|++||++||||+++|.+||+++.+..|+++++|++++|+|||++...   ..++|+|+|||+||+|+|++.++    +
T Consensus        10 r~~~lrl~~Gedl~~~i~~~~~~~~i~~a~vs~iGsl~~~~l~~~~~~~~~~~~~~~~g~~EIlsl~Gti~~~~g----~   85 (143)
T 2dt4_A           10 RTYLFRVPEGEELLTYIKNFCKKEGIETAIINGIGTLKNPKIGYFLEEKKEYKVIPLKGSYELISLIGNVSLKDG----E   85 (143)
T ss_dssp             EEEEEEECTTCBHHHHHHHHHHHHTCCSEEEEEEEEEEEEEEEEEETTTTEEEEEECCSEEEEEEEEEEEEEETT----E
T ss_pred             CEEEEEECCCCcHHHHHHHHHHHcCCCEEEEEEEEEEEEEEEEeecCccCcceeEeecCCEEEEEeEEEEECCCC----C
Confidence            6999999999999999999999977766667999999999999998765   26889999999999999999753    5


Q ss_pred             CCCeeEEEEeCCCCcEEeeecCCccEEecceEEEEEEcCCCcccccc
Q 038197          226 RTGGLSVSLAGPDGRVIGGGVAGLLMAASPIQIVVGSFMPNGFKVHK  272 (366)
Q Consensus       226 ~~~HLHVSLA~~dGqViGGHL~g~LIAasTVEVVV~sF~~~~~kr~~  272 (366)
                      ++.|||++|+|.||+++||||.+++ ++ ++||+|.+|.+..|+|.+
T Consensus        86 p~~HlHi~l~~~~G~v~GGHl~~g~-v~-t~Ev~i~~~~~~~~~R~~  130 (143)
T 2dt4_A           86 PFVHAHVSLGNEEGIVFGGHLVEGE-VF-VAEIFLQELKGEKIERKP  130 (143)
T ss_dssp             EEEEEEEEEECTTSCEEEEEEEEEE-EE-EEEEEEEEEEESCCEEBC
T ss_pred             ceeeEEEEEECCCCCEeCCCCCCCc-eE-EEEEEEEEcCCCeEEEeC
Confidence            7899999999999999999999888 66 999999999998899887

>3htn_A Putative DNA binding protein; DUF269 family protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE 1PE; 1.50A {Bacteroides thetaiotaomicron vpi-5482} SCOP: d.290.1.0

Probab=99.95  E-value=2.1e-27  Score=207.69  Aligned_cols=120  Identities=14%  Similarity=0.203  Sum_probs=108.4

Q ss_pred             eeEEEEEcCCCCHHHHHHHHHhhCCccEEEEEeeceeeeEEEecCCCCCC---ceeeeeceeEEEeeeceeecCCCCCCC
Q 038197          149 TPHVVTVNTGEDVAGKILSFSQKGPRGICVLSANGAVSNVTIRQPGSSGG---ILTYEGRFEILSLSGSFTVTETGGARS  225 (366)
Q Consensus       149 ~phVIrV~~GEDIvesI~~Faq~~~ra~cILSAiGAVsnVTLrq~~~s~~---~~t~eG~FEILSLSGnis~~~~gg~~~  225 (366)
                      +.|++||++||||+++|.+||+++.+..|+++++|++++|+||+++....   .++|+|+|||+||+|||++.++    +
T Consensus        16 r~~~lrl~~Gedl~~~l~~~~~~~~i~~a~vs~iGsl~~~~l~~~~~~~~~y~~~~~~g~~EI~sl~Gti~~~dG----~   91 (149)
T 3htn_A           16 NKYIVSINNHTEIVKALNAFCKEKGILSGSINGIGAIGELTLRFFNPKTKAYDDKTFREQMEISNLTGNISSMNE----Q   91 (149)
T ss_dssp             TEEEEEECTTCBHHHHHHHHHHHHTCCSEEEEEEEEEEEEEEEEECTTTCCEEEEEECSCEEEEEEEEEEEEETT----E
T ss_pred             CEEEEEECCCChHHHHHHHHHHHcCCcEEEEEEEEEeeeEEEEccCCCcccceeEEecCceEEEEeEEEEEccCC----C
Confidence            68999999999999999999999888877779999999999999987642   5799999999999999999753    6


Q ss_pred             CCCeeEEEEeCCCCcEEeeecCCccEEecceEEEEEEcCCCcccccccc
Q 038197          226 RTGGLSVSLAGPDGRVIGGGVAGLLMAASPIQIVVGSFMPNGFKVHKRK  274 (366)
Q Consensus       226 ~~~HLHVSLA~~dGqViGGHL~g~LIAasTVEVVV~sF~~~~~kr~~~k  274 (366)
                      ++.|||++|+|.||+++||||..+ ++..++||+|..+.. .+.|.++.
T Consensus        92 p~~HlH~sl~~~~G~v~gGHl~~g-~V~~t~Ei~i~~~~~-~~~R~~D~  138 (149)
T 3htn_A           92 VYLHLHITVGRSDYSALAGHLLSA-IQNGAGEFVVEDYSE-RISRTYNP  138 (149)
T ss_dssp             EEEEEEEEEECTTSBEEEEEEEEE-EEEEEEEEEEEECCS-CCEEEEET
T ss_pred             ceEEEEEEEECCCCCEEeEEeCCC-EEEEEEEEEEEEcCC-eeEEeeCC
Confidence            889999999999999999999998 677899999999988 68877653

>2h6l_A Hypothetical protein; NESG GR103, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.00A {Archaeoglobus fulgidus} SCOP: d.290.1.3

Probab=99.94  E-value=2.8e-27  Score=205.39  Aligned_cols=120  Identities=21%  Similarity=0.224  Sum_probs=107.5

Q ss_pred             eeEEEEEcCCCCHHHHHHHHHhhCCccEEEEEeeceeeeEEEecCCCCC---CceeeeeceeEEEeeeceeecCCCCCCC
Q 038197          149 TPHVVTVNTGEDVAGKILSFSQKGPRGICVLSANGAVSNVTIRQPGSSG---GILTYEGRFEILSLSGSFTVTETGGARS  225 (366)
Q Consensus       149 ~phVIrV~~GEDIvesI~~Faq~~~ra~cILSAiGAVsnVTLrq~~~s~---~~~t~eG~FEILSLSGnis~~~~gg~~~  225 (366)
                      ++|+|||++||||+++|.+||++..+..|+++++|+|++++||+++...   ..++|+|+|||+||+|+|++.++    +
T Consensus        10 r~~~lrl~~Gedl~~~i~~~~~~~~i~~a~vs~iGsl~~~~l~~~~~~~~~y~~~~~~g~~EIlsl~Gti~~~dg----~   85 (146)
T 2h6l_A           10 KGFLLRLDYGKDLVRQIEEFLEEKGIHAAHISAIGAVRSAVIGYYDQEKKEYVKKELMEPLEILSLSGNVSMKDS----K   85 (146)
T ss_dssp             EEEEEECCTTSBHHHHHHHHHHHHTCCSEEEEEEEEEEEEEEEEEETTTTEEEEEEECSCEEEEEEEEEEEEETT----E
T ss_pred             CEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEEEEEEEEEEECCCCCCcceeEEEecCcEEEEEeEEEEECCCC----C
Confidence            5999999999999999999999966665556999999999999998776   36889999999999999999753    5


Q ss_pred             CCCeeEEEEeCCCCcEEeeecCCccEEecceEEEEEEcCCCccccccccc
Q 038197          226 RTGGLSVSLAGPDGRVIGGGVAGLLMAASPIQIVVGSFMPNGFKVHKRKH  275 (366)
Q Consensus       226 ~~~HLHVSLA~~dGqViGGHL~g~LIAasTVEVVV~sF~~~~~kr~~~k~  275 (366)
                      ++.|||++|+ .||+++||||.+++|  .++||+|.+|.+..|+|.++..
T Consensus        86 p~~HlHi~l~-~~G~v~gGHl~~g~V--~t~Evvi~~~~~~~~~R~~D~e  132 (146)
T 2h6l_A           86 PFCHIHVLLG-KDGEVYGGHLFSAEV--FACEVFVLPLSGEAPERAFDEQ  132 (146)
T ss_dssp             EEEEEEEEEE-EBTEEEEEEEEEEEE--EEEEEEEEECBSCCCBEEECTT
T ss_pred             ceeeEEEEEC-CCCcEEeeecCCCEE--EEEEEEEEEcCCCcEEEeECCC
Confidence            7899999999 999999999999884  6999999999998899987643

>3hwu_A Putative DNA-binding protein; YP_299413.1, structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.30A {Ralstonia eutropha}

Probab=99.92  E-value=1.2e-24  Score=189.60  Aligned_cols=120  Identities=15%  Similarity=0.160  Sum_probs=105.4

Q ss_pred             eeEEEEEcCCCCHHHHHHHHHhhCCccEEEEEeeceeeeEEEecCCCCCC---ceeeeeceeEEEeeeceeecCCCCCCC
Q 038197          149 TPHVVTVNTGEDVAGKILSFSQKGPRGICVLSANGAVSNVTIRQPGSSGG---ILTYEGRFEILSLSGSFTVTETGGARS  225 (366)
Q Consensus       149 ~phVIrV~~GEDIvesI~~Faq~~~ra~cILSAiGAVsnVTLrq~~~s~~---~~t~eG~FEILSLSGnis~~~~gg~~~  225 (366)
                      +.+++||++||||+++|.+||+++.+..++++++|++++++|++++....   ..+++ ++||+||+|||++.++    +
T Consensus        13 ~~~~~rL~~Gedl~~~l~~~~~~~~i~~a~v~~iGsl~~~~l~~~~~~~~~y~~~~~~-~~Ei~sl~Gtis~~dG----~   87 (147)
T 3hwu_A           13 TGYLMVLRHGDNVLQNLEQLARDEHIPSASFVGIGFMSEATFGFYDFGRKQFDPKTYR-NVEMANMTGSIAWKEG----K   87 (147)
T ss_dssp             TEEEEEEETTCBHHHHHHHHHHHTTCSEEEEEEEEEEEEEEEEEEETTTTEEEEEEEE-EEEEEEEEEEEEEETT----E
T ss_pred             CEEEEEECCCChHHHHHHHHHHHcCCCEEEEEEEecccEEEEEeecCCcCccccEEec-CcEEEEEEEEEEcCCC----C
Confidence            46999999999999999999999999888889999999999999987652   45678 8999999999998663    6


Q ss_pred             CCCeeEEEEeCCCCcEEeeecCCccEEecceEEEEEEcCCCcccccccc
Q 038197          226 RTGGLSVSLAGPDGRVIGGGVAGLLMAASPIQIVVGSFMPNGFKVHKRK  274 (366)
Q Consensus       226 ~~~HLHVSLA~~dGqViGGHL~g~LIAasTVEVVV~sF~~~~~kr~~~k  274 (366)
                      ++.|||++|+|.||+++||||..+.+...|+||+|..+.. .+.|.++.
T Consensus        88 p~~HlH~~~~d~~g~v~GGHL~~g~V~~~t~Ei~i~~~~~-~~~R~~D~  135 (147)
T 3hwu_A           88 PSIHAHGTVTDGTFQGAGGHLLGLTVGTGSCEITVTVYPQ-RLDRFVDP  135 (147)
T ss_dssp             EEEEEEEEEECTTCCEEEEEEEEEEEEEEEEEEEEEEESS-CCBEEEET
T ss_pred             ceEEEEEEEECCCCcEEeeEecCcEEEeEeEEEEEEEcCC-eEEEEECC
Confidence            8999999999999999999999985443599999998754 78887754

>2ezd_A High mobility group protein HMG-I/HMG-Y; DNA binding protein, minor groove DNA binding, transcriptional CO-activator, architectural factor; HET: DNA; NMR {Homo sapiens} SCOP: j.10.1.1 PDB: 2eze_A*

Probab=96.64  E-value=0.00092  Score=42.92  Aligned_cols=16  Identities=56%  Similarity=0.796  Sum_probs=14.5

Q ss_pred             CCCCCCCCCCCCCCcc
Q 038197          116 SSKRGRGRPPGSGNWQ  131 (366)
Q Consensus       116 ~~kr~RGRP~GSknK~  131 (366)
                      ..||+||||.|||||.
T Consensus         3 tpKrpRgRpkGSKNk~   18 (26)
T 2ezd_A            3 TPKRPRGRPKGSKNKG   18 (26)
T ss_dssp             SCCCCSSCCTTCCCCS
T ss_pred             CCcCCCCCcCcccccC
Confidence            4699999999999986

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	366
d2hx0a1	136	d.290.1.3 (A:6-141) Hypothetical protein STM3071 {	9e-24
d2h6la1	138	d.290.1.3 (A:1-138) Hypothetical protein AF0104 {A	2e-16

>d2hx0a1 d.290.1.3 (A:6-141) Hypothetical protein STM3071 {Salmonella typhimurium [TaxId: 90371]} Length = 136

class: Alpha and beta proteins (a+b)
fold: AF0104/ALDC/Ptd012-like
superfamily: AF0104/ALDC/Ptd012-like
family: AF0104-like
domain: Hypothetical protein STM3071
species: Salmonella typhimurium [TaxId: 90371]

 Score = 93.4 bits (232), Expect = 9e-24
 Identities = 23/114 (20%), Positives = 55/114 (48%), Gaps = 10/114 (8%)

Query: 151 HVVTVNTGEDVAGKILSFS-QKGPRGICVLSANGAVSNVTIRQPGSSGGILTYEGRFEIL 209
           + + +  G++V  ++ +F  Q   R   +    G++++V +R  G      +  G FE++
Sbjct: 9   YALRLLPGQEVFSQLHAFVQQNQLRAAWIAGCTGSLTDVALRYAGQ-EATTSLTGTFEVI 67

Query: 210 SLSGSFTVTETGGARSRTGGLSVSLAGPDGRVIGGGVAGLLMAASPIQIVVGSF 263
           SL+G+  +T           L ++++ P G ++GG +       + +++V+G  
Sbjct: 68  SLNGTLELTGEH--------LHLAVSDPYGVMLGGHMMPGCTVRTTLELVIGEL 113

>d2h6la1 d.290.1.3 (A:1-138) Hypothetical protein AF0104 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 138

class: Alpha and beta proteins (a+b)
fold: AF0104/ALDC/Ptd012-like
superfamily: AF0104/ALDC/Ptd012-like
family: AF0104-like
domain: Hypothetical protein AF0104
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score = 73.0 bits (179), Expect = 2e-16
 Identities = 27/113 (23%), Positives = 49/113 (43%), Gaps = 8/113 (7%)

Query: 151 HVVTVNTGEDVAGKILSFSQKGPRGICVLSANGAVSNVTIR---QPGSSGGILTYEGRFE 207
            ++ ++ G+D+  +I  F ++       +SA GAV +  I    Q              E
Sbjct: 12  FLLRLDYGKDLVRQIEEFLEEKGIHAAHISAIGAVRSAVIGYYDQEKKEYVKKELMEPLE 71

Query: 208 ILSLSGSFTVTETGGARSRTGGLSVSLAGPDGRVIGGGVAGLLMAASPIQIVV 260
           ILSLSG+ ++ ++         + V L G DG V GG +    + A  + ++ 
Sbjct: 72  ILSLSGNVSMKDSK----PFCHIHVLL-GKDGEVYGGHLFSAEVFACEVFVLP 119

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	366
d2hx0a1	136	Hypothetical protein STM3071 {Salmonella typhimuri	99.95
d2h6la1	138	Hypothetical protein AF0104 {Archaeoglobus fulgidu	99.92

>d2hx0a1 d.290.1.3 (A:6-141) Hypothetical protein STM3071 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a+b)
fold: AF0104/ALDC/Ptd012-like
superfamily: AF0104/ALDC/Ptd012-like
family: AF0104-like
domain: Hypothetical protein STM3071
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.95  E-value=2.9e-28  Score=208.19  Aligned_cols=123  Identities=20%  Similarity=0.382  Sum_probs=112.7

Q ss_pred             CCCCceeEEEEEcCCCCHHHHHHHHHhh-CCccEEEEEeeceeeeEEEecCCCCCCceeeeeceeEEEeeeceeecCCCC
Q 038197          144 AGGDFTPHVVTVNTGEDVAGKILSFSQK-GPRGICVLSANGAVSNVTIRQPGSSGGILTYEGRFEILSLSGSFTVTETGG  222 (366)
Q Consensus       144 ~g~~~~phVIrV~~GEDIvesI~~Faq~-~~ra~cILSAiGAVsnVTLrq~~~s~~~~t~eG~FEILSLSGnis~~~~gg  222 (366)
                      +++..|.|++||++||||+++|.+||++ +.+++||++++|++++|+|++|+... ...++|+|||+||+|||...+   
T Consensus         2 ~~~~~R~~~lrl~~Gedl~~~i~~~~~~~~I~~a~V~~~iGs~~~~~~~~~~~~~-~~~~~g~~Ei~sl~G~I~~~~---   77 (136)
T d2hx0a1           2 NASTARFYALRLLPGQEVFSQLHAFVQQNQLRAAWIAGCTGSLTDVALRYAGQEA-TTSLTGTFEVISLNGTLELTG---   77 (136)
T ss_dssp             SCCCCEEEEEEECTTCBHHHHHHHHHHHHTCSSEEEEEEEEEEEEEEEECTTCSS-CEEEEEEEEEEEEEEEEETTE---
T ss_pred             CCCCCcEEEEEECCCChHHHHHHHHHHHhCCCEEEEEEEeeeeEEEEEEeCCCCC-cEEecCcEEEEEEEEEeccCC---
Confidence            3567899999999999999999999988 56789999999999999999998765 678999999999999998765   


Q ss_pred             CCCCCCeeEEEEeCCCCcEEeeecCCccEEecceEEEEEEcCCCccccccccc
Q 038197          223 ARSRTGGLSVSLAGPDGRVIGGGVAGLLMAASPIQIVVGSFMPNGFKVHKRKH  275 (366)
Q Consensus       223 ~~~~~~HLHVSLA~~dGqViGGHL~g~LIAasTVEVVV~sF~~~~~kr~~~k~  275 (366)
                           .|||++|+|.||+++||||+++++++.++||+|.+|.+..++|..+..
T Consensus        78 -----~HlH~~~a~~~g~v~gGhL~~g~~v~~t~Eivi~~l~~~~~~R~~D~~  125 (136)
T d2hx0a1          78 -----EHLHLAVSDPYGVMLGGHMMPGCTVRTTLELVIGELPALTFSRQPCAI  125 (136)
T ss_dssp             -----EEEEEEEECTTSCEEEEEECTTCEEEEEEEEEEEECTTEEEEEEECTT
T ss_pred             -----CeEEEEEECCCCcEEeEEecCCcEEEEEEEEEEEEccCCceEEccCCC
Confidence                 699999999999999999999989999999999999999999987643

>d2h6la1 d.290.1.3 (A:1-138) Hypothetical protein AF0104 {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: AF0104/ALDC/Ptd012-like
superfamily: AF0104/ALDC/Ptd012-like
family: AF0104-like
domain: Hypothetical protein AF0104
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.92  E-value=1.3e-25  Score=190.76  Aligned_cols=119  Identities=21%  Similarity=0.228  Sum_probs=107.6

Q ss_pred             eeEEEEEcCCCCHHHHHHHHHhhCCccEEEEEeeceeeeEEEecCCCCCC---ceeeeeceeEEEeeeceeecCCCCCCC
Q 038197          149 TPHVVTVNTGEDVAGKILSFSQKGPRGICVLSANGAVSNVTIRQPGSSGG---ILTYEGRFEILSLSGSFTVTETGGARS  225 (366)
Q Consensus       149 ~phVIrV~~GEDIvesI~~Faq~~~ra~cILSAiGAVsnVTLrq~~~s~~---~~t~eG~FEILSLSGnis~~~~gg~~~  225 (366)
                      |.|++||++||||+++|.+||++..+.+|+++++|++++++|++++...+   .+.++|+|||+||+|||...++    +
T Consensus        10 r~~~~rl~~Gedl~~~l~~~~~~~~i~~a~is~iG~~~~~~l~~~~~~~~~~~~~~~~g~~Ei~sl~G~i~~~~g----~   85 (138)
T d2h6la1          10 KGFLLRLDYGKDLVRQIEEFLEEKGIHAAHISAIGAVRSAVIGYYDQEKKEYVKKELMEPLEILSLSGNVSMKDS----K   85 (138)
T ss_dssp             EEEEEECCTTSBHHHHHHHHHHHHTCCSEEEEEEEEEEEEEEEEEETTTTEEEEEEECSCEEEEEEEEEEEEETT----E
T ss_pred             CEEEEEECCCChHHHHHHHHHHHcCCcEEEEEEEeecccceEEEecCCCCccceEecCCCEEEEEeEEEEEcCCC----C
Confidence            78999999999999999999999888889999999999999999887654   6789999999999999998774    5


Q ss_pred             CCCeeEEEEeCCCCcEEeeecCCccEEecceEEEEEEcCCCcccccccc
Q 038197          226 RTGGLSVSLAGPDGRVIGGGVAGLLMAASPIQIVVGSFMPNGFKVHKRK  274 (366)
Q Consensus       226 ~~~HLHVSLA~~dGqViGGHL~g~LIAasTVEVVV~sF~~~~~kr~~~k  274 (366)
                      ++.|+|+++++ +|+++||||..+.+.  ++|+++.++.+..++|.++.
T Consensus        86 p~~HlH~~~~~-~g~~~gGHl~~~~v~--~~e~~i~~~~~~~~~R~~D~  131 (138)
T d2h6la1          86 PFCHIHVLLGK-DGEVYGGHLFSAEVF--ACEVFVLPLSGEAPERAFDE  131 (138)
T ss_dssp             EEEEEEEEEEE-BTEEEEEEEEEEEEE--EEEEEEEECBSCCCBEEECT
T ss_pred             cEEEEEEEECC-CCCEEEEEeCccEEE--EEEEEEEEecCCceEEecCC
Confidence            88999999997 799999999988654  58999999999999998654