Citrus Sinensis ID: 038218

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280
SRRVLTIAGALVTVIDDIYDIYGTLDELDLFTYAVERWDINFAIKQLPDYMKICFFALYNFVSEVADYILKQQDSDQLLRIKNSWLGLLQAFLVEAKWYHNKYAPTLEEYLKNAALSISGPLITITAYISATNPIIEKELEYLESNPDLIQWSSRILRLLNDLGTSSDEIQRGDVSKSIQCYMHETGASEEAAREHIKDLIRQMWKKVMMDVCRASNDKDPPLFQTKNEIILNPLRVAHFIYLHGDGHGAQKQETMDEVFALLFQPIPVENNTHVALASA
ccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHccccHHHHHHHHHHHccccccHHHHHHHcccHHHHHHHHHHHHHHcccccccHHHHccccccHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHccccEEcccccccccccc
cHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHccHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHcHHcccHHHHHHHHHHcccccccHHHHHHHHcccHHHHHHHHHHHHHHHccccHHHHHcccccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHEEccccccccccEEEEcc
SRRVLTIAGALVTVIDDIYDIYGTLDELDLFTYAVERWDINFAIKQLPDYMKICFFALYNFVSEVADYILKQQDSDQLLRIKNSWLGLLQAFLVEAKWYHNKYAPTLEEYLKNAalsisgplITITAYISATNPIIEKELEylesnpdliQWSSRILRLLNdlgtssdeiqrgdvskSIQCYMHETGASEEAAREHIKDLIRQMWKKVMMDVCrasndkdpplfqtkneiilnpLRVAHFIYLhgdghgaqkqETMDEVFALLfqpipvennthvalasa
SRRVLTIAGALVTVIDDIYDIYGTLDELDLFTYAVERWDINFAIKQLPDYMKICFFALYNFVSEVADYILKQQDSDQLLRIKNSWLGLLQAFLVEAKWYHNKYAPTLEEYLKNAALSISGPLITITAYISATNPIIEKELEYLESNPDLIQWSSRILRLLNDLgtssdeiqrgdvSKSIQCYMHETGASEEAAREHIKDLIRQMWKKVMMDVCRASNDKDPPLFQTKNEIILNPLRVAHFIYLHGDGHGAQKQETMDEVFALLFQPIPVENNTHVALASA
SRRVLTIAGALVTVIDDIYDIYGTLDELDLFTYAVERWDINFAIKQLPDYMKICFFALYNFVSEVADYILKQQDSDQLLRIKNSWLGLLQAFLVEAKWYHNKYAPTLEEYLKNAALSISGPLITITAYISATNPIIEKELEYLESNPDLIQWSSRILRLLNDLGTSSDEIQRGDVSKSIQCYMHETGASEEAAREHIKDLIRQMWKKVMMDVCRASNDKDPPLFQTKNEIILNPLRVAHFIYLHGDGHGAQKQETMDEVFALLFQPIPVENNTHVALASA
***VLTIAGALVTVIDDIYDIYGTLDELDLFTYAVERWDINFAIKQLPDYMKICFFALYNFVSEVADYILKQQDSDQLLRIKNSWLGLLQAFLVEAKWYHNKYAPTLEEYLKNAALSISGPLITITAYISATNPIIEKELEYLESNPDLIQWSSRILRLLNDLGT************SIQCYMH*********REHIKDLIRQMWKKVMMDVCRASNDKDPPLFQTKNEIILNPLRVAHFIYLHGDGHGAQKQETMDEVFALLFQPIPVEN*********
SRRVLTIAGALVTVIDDIYDIYGTLDELDLFTYAVERWDINFAIKQLPDYMKICFFALYNFVSEVADYILKQQDSDQLLRIKNSWLGLLQAFLVEAKWYHNKYAPTLEEYLKNAALSISGPLITITAYISATNPIIEKELEYLESNPDLIQWSSRILRLLNDLGTSSDEIQRGDVSKSIQCYMHETGASEEAAREHIKDLIRQMWKKVMMDVCRASNDKDPPLFQTKNEIILNPLRVAHFIYLHGDGHGAQKQETMDEVFALLFQPIPVENN********
SRRVLTIAGALVTVIDDIYDIYGTLDELDLFTYAVERWDINFAIKQLPDYMKICFFALYNFVSEVADYILKQQDSDQLLRIKNSWLGLLQAFLVEAKWYHNKYAPTLEEYLKNAALSISGPLITITAYISATNPIIEKELEYLESNPDLIQWSSRILRLLNDLGTSSDEIQRGDVSKSIQCYMHETGASEEAAREHIKDLIRQMWKKVMMDVCRASNDKDPPLFQTKNEIILNPLRVAHFIYLHGDGHGAQKQETMDEVFALLFQPIPVENNTHVALASA
SRRVLTIAGALVTVIDDIYDIYGTLDELDLFTYAVERWDINFAIKQLPDYMKICFFALYNFVSEVADYILKQQDSDQLLRIKNSWLGLLQAFLVEAKWYHNKYAPTLEEYLKNAALSISGPLITITAYISATNPIIEKELEYLESNPDLIQWSSRILRLLNDLGTSSDEIQRGDVSKSIQCYMHETGASEEAAREHIKDLIRQMWKKVMMDVCRASNDKDPPLFQTKNEIILNPLRVAHFIYLHGDGHGAQKQETMDEVFALLFQPIPVENNTHVALASA
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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SRRVLTIAGALVTVIDDIYDIYGTLDELDLFTYAVERWDINFAIKQLPDYMKICFFALYNFVSEVADYILKQQDSDQLLRIKNSWLGLLQAFLVEAKWYHNKYAPTLEEYLKNAALSISGPLITITAYISATNPIIEKELEYLESNPDLIQWSSRILRLLNDLGTSSDEIQRGDVSKSIQCYMHETGASEEAAREHIKDLIRQMWKKVMMDVCRASNDKDPPLFQTKNEIILNPLRVAHFIYLHGDGHGAQKQETMDEVFALLFQPIPVENNTHVALASA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query280 2.2.26 [Sep-21-2011]
Q8L5K3606 (R)-limonene synthase 1 O N/A no 0.978 0.452 0.688 1e-113
Q93X23597 Myrcene synthase, chlorop N/A no 0.946 0.443 0.535 1e-77
Q6PWU2590 (-)-alpha-terpineol synth no no 0.932 0.442 0.501 2e-71
Q8L5K4600 Gamma-terpinene synthase, N/A no 0.932 0.435 0.5 4e-70
B3TPQ7592 Alpha-terpineol synthase, N/A no 0.925 0.437 0.498 4e-69
P0DI77600 1,8-cineole synthase 2, c yes no 0.957 0.446 0.468 1e-64
P0DI76600 1,8-cineole synthase 1, c yes no 0.957 0.446 0.468 1e-64
G1JUH1607 (-)-camphene/tricyclene s N/A no 0.932 0.429 0.453 1e-64
A7IZZ2615 (+)-alpha-pinene synthase N/A no 0.925 0.421 0.466 3e-62
Q2XSC4538 Exo-alpha-bergamotene syn N/A no 0.928 0.483 0.445 4e-62
>sp|Q8L5K3|RLC1_CITLI (R)-limonene synthase 1 OS=Citrus limon PE=2 SV=1 Back     alignment and function desciption
 Score =  409 bits (1051), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 192/279 (68%), Positives = 232/279 (83%), Gaps = 5/279 (1%)

Query: 2   RRVLTIAGALVTVIDDIYDIYGTLDELDLFTYAVERWDINFAIKQLPDYMKICFFALYNF 61
           RRVLTI+ AL+TVIDDIYD+YGTLDEL++FT AVERWDIN+A+K LP YMK+CF ALYNF
Sbjct: 328 RRVLTISIALITVIDDIYDVYGTLDELEIFTDAVERWDINYALKHLPGYMKMCFLALYNF 387

Query: 62  VSEVADYILKQQDSDQLLRIKNSWLGLLQAFLVEAKWYHNKYAPTLEEYLKNAALSISGP 121
           V+E A Y+LKQQD D LL IKN+WLGL+QA+LVEAKWYH+KY P LEEYL+N  +SI+GP
Sbjct: 388 VNEFAYYVLKQQDFDLLLSIKNAWLGLIQAYLVEAKWYHSKYTPKLEEYLENGLVSITGP 447

Query: 122 LITITAYISATNPIIEKELEYLESNPDLIQWSSRILRLLNDLGTSSDEIQRGDVSKSIQC 181
           LI   +Y+S TNPII+KELE+LESNPD++ WSS+I RL +DLGTSSDEIQRGDV KSIQC
Sbjct: 448 LIITISYLSGTNPIIKKELEFLESNPDIVHWSSKIFRLQDDLGTSSDEIQRGDVPKSIQC 507

Query: 182 YMHETGASEEAAREHIKDLIRQMWKKVMMDVCRASNDKDPPLFQTKNEIILNPLRVAHFI 241
           YMHETGASEE AR+HIKD++RQMWKKV       + DKD PL  T  E +LN +R++HF+
Sbjct: 508 YMHETGASEEVARQHIKDMMRQMWKKVNA----YTADKDSPLTGTTTEFLLNLVRMSHFM 563

Query: 242 YLHGDGHGAQKQETMDEVFALLFQPIPVENNTHVALASA 280
           YLHGDGHG Q QET+D  F LLFQPIP+E+  H+A  ++
Sbjct: 564 YLHGDGHGVQNQETIDVGFTLLFQPIPLEDK-HMAFTAS 601

Citrus limon (taxid: 2708)
EC: 4EC: .EC: 2EC: .EC: 3EC: .EC: 2EC: 0
>sp|Q93X23|MYRS_QUEIL Myrcene synthase, chloroplastic OS=Quercus ilex PE=1 SV=1 Back     alignment and function description
>sp|Q6PWU2|ATESY_VITVI (-)-alpha-terpineol synthase OS=Vitis vinifera PE=1 SV=1 Back     alignment and function description
>sp|Q8L5K4|GTPS_CITLI Gamma-terpinene synthase, chloroplastic OS=Citrus limon PE=1 SV=1 Back     alignment and function description
>sp|B3TPQ7|ATESY_MAGGA Alpha-terpineol synthase, chloroplastic OS=Magnolia grandiflora PE=1 SV=1 Back     alignment and function description
>sp|P0DI77|CIN2_ARATH 1,8-cineole synthase 2, chloroplastic OS=Arabidopsis thaliana GN=TPS23 PE=1 SV=1 Back     alignment and function description
>sp|P0DI76|CIN1_ARATH 1,8-cineole synthase 1, chloroplastic OS=Arabidopsis thaliana GN=TPS27 PE=1 SV=1 Back     alignment and function description
>sp|G1JUH1|TPS3_SOLLC (-)-camphene/tricyclene synthase, chloroplastic OS=Solanum lycopersicum GN=TPS3 PE=1 SV=1 Back     alignment and function description
>sp|A7IZZ2|TPS2_CANSA (+)-alpha-pinene synthase, chloroplastic OS=Cannabis sativa PE=1 SV=1 Back     alignment and function description
>sp|Q2XSC4|LABER_LAVAN Exo-alpha-bergamotene synthase OS=Lavandula angustifolia PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query280
322424201 607 limonene synthase [Murraya paniculata] 1.0 0.461 0.871 1e-143
41017756 606 RecName: Full=(R)-limonene synthase 1; A 0.978 0.452 0.688 1e-112
21435708 606 (+)-limonene synthase 2 [Citrus limon] 0.978 0.452 0.690 1e-112
209446863 607 limonene synthase [Poncirus trifoliata] 0.978 0.451 0.705 1e-111
49659437 608 d-limonene synthase [Citrus unshiu] 0.978 0.450 0.687 1e-111
49659435 606 d-limonene synthase [Citrus unshiu] 0.978 0.452 0.697 1e-110
394556815 612 geraniol synthase [Citrus jambhiri] 0.975 0.446 0.683 1e-108
225465905 590 PREDICTED: myrcene synthase, chloroplast 0.939 0.445 0.561 5e-79
359495020 849 PREDICTED: myrcene synthase, chloroplast 0.935 0.308 0.555 1e-78
296090352347 unnamed protein product [Vitis vinifera] 0.939 0.757 0.553 1e-78
>gi|322424201|gb|ADX01382.1| limonene synthase [Murraya paniculata] Back     alignment and taxonomy information
 Score =  513 bits (1322), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 244/280 (87%), Positives = 258/280 (92%)

Query: 1   SRRVLTIAGALVTVIDDIYDIYGTLDELDLFTYAVERWDINFAIKQLPDYMKICFFALYN 60
           SRRV+TI  AL+TVIDDIYD+YGTLDEL+LFTYAVERWDINFAIKQLPDYMKICFFALYN
Sbjct: 328 SRRVVTITAALITVIDDIYDVYGTLDELELFTYAVERWDINFAIKQLPDYMKICFFALYN 387

Query: 61  FVSEVADYILKQQDSDQLLRIKNSWLGLLQAFLVEAKWYHNKYAPTLEEYLKNAALSISG 120
           FVSEVADYILKQQDSDQ L IKNSWLGLLQAFLVEAKWYHNKYAPTLEEYLKNA LSI+G
Sbjct: 388 FVSEVADYILKQQDSDQFLAIKNSWLGLLQAFLVEAKWYHNKYAPTLEEYLKNAELSIAG 447

Query: 121 PLITITAYISATNPIIEKELEYLESNPDLIQWSSRILRLLNDLGTSSDEIQRGDVSKSIQ 180
           PLITITAY+SA NPIIEKELEYLESNP+LIQWSSRI RLL+DLGTSSDEIQRGDVSKSI 
Sbjct: 448 PLITITAYLSAANPIIEKELEYLESNPELIQWSSRIFRLLDDLGTSSDEIQRGDVSKSIH 507

Query: 181 CYMHETGASEEAAREHIKDLIRQMWKKVMMDVCRASNDKDPPLFQTKNEIILNPLRVAHF 240
           CYMHETGASEE AREHIK+LIRQ WKKVMMDV RASN+KD PL QT NE ILN LRV+HF
Sbjct: 508 CYMHETGASEETAREHIKNLIRQTWKKVMMDVSRASNNKDSPLSQTANEFILNMLRVSHF 567

Query: 241 IYLHGDGHGAQKQETMDEVFALLFQPIPVENNTHVALASA 280
           +YLHGDGHGAQ QETMDE FALLFQPIP+E+N H AL  A
Sbjct: 568 VYLHGDGHGAQNQETMDEAFALLFQPIPLEDNKHRALTLA 607

Source: Murraya paniculata

Species: Murraya paniculata

Genus: Murraya

Family: Rutaceae

Order: Sapindales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|41017756|sp|Q8L5K3.1|RLC1_CITLI RecName: Full=(R)-limonene synthase 1; AltName: Full=(+)-limonene synthase 1 gi|21435703|gb|AAM53944.1|AF514287_1 (+)-limonene synthase 1 [Citrus limon] gi|152962684|dbj|BAF73932.1| limonene synthase [Citrus jambhiri] Back     alignment and taxonomy information
>gi|21435708|gb|AAM53946.1|AF514289_1 (+)-limonene synthase 2 [Citrus limon] Back     alignment and taxonomy information
>gi|209446863|dbj|BAG74774.1| limonene synthase [Poncirus trifoliata] Back     alignment and taxonomy information
>gi|49659437|dbj|BAD27257.1| d-limonene synthase [Citrus unshiu] Back     alignment and taxonomy information
>gi|49659435|dbj|BAD27256.1| d-limonene synthase [Citrus unshiu] Back     alignment and taxonomy information
>gi|394556815|dbj|BAM29049.1| geraniol synthase [Citrus jambhiri] Back     alignment and taxonomy information
>gi|225465905|ref|XP_002266808.1| PREDICTED: myrcene synthase, chloroplastic [Vitis vinifera] Back     alignment and taxonomy information
>gi|359495020|ref|XP_002267019.2| PREDICTED: myrcene synthase, chloroplastic-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|296090352|emb|CBI40171.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query280
UNIPROTKB|Q8L5K4600 Q8L5K4 "Gamma-terpinene syntha 0.932 0.435 0.5 6.5e-67
UNIPROTKB|B3TPQ7592 B3TPQ7 "Alpha-terpineol syntha 0.921 0.435 0.5 3.2e-65
UNIPROTKB|J7LQ09542 J7LQ09 "Trans-alpha-bergamoten 0.928 0.479 0.460 4.8e-62
TAIR|locus:2829283600 TPS-CIN ""terpene synthase-lik 0.957 0.446 0.468 4.8e-62
TAIR|locus:2086014600 TPS-CIN ""terpene synthase-lik 0.957 0.446 0.468 4.8e-62
TAIR|locus:2086004598 AT3G25810 [Arabidopsis thalian 0.953 0.446 0.450 3.5e-59
TAIR|locus:2047510591 TPS10 "terpene synthase 10" [A 0.946 0.448 0.439 6.6e-58
UNIPROTKB|J7LH11546 J7LH11 "(+)-epi-alpha-bisabolo 0.932 0.478 0.429 7.5e-57
UNIPROTKB|Q5UB07580 TPS4 "Tricyclene synthase TPS4 0.928 0.448 0.466 9.6e-57
UNIPROTKB|E2E2P0594 TPS2 "Gamma-terpinene synthase 0.928 0.437 0.433 6.8e-56
UNIPROTKB|Q8L5K4 Q8L5K4 "Gamma-terpinene synthase, chloroplastic" [Citrus limon (taxid:2708)] Back     alignment and assigned GO terms
 Score = 680 (244.4 bits), Expect = 6.5e-67, P = 6.5e-67
 Identities = 134/268 (50%), Positives = 187/268 (69%)

Query:     2 RRVLTIAGALVTVIDDIYDIYGTLDELDLFTYAVERWDINFAIKQLPDYMKICFFALYNF 61
             RR+  +   L+T IDD+YD+YGTLDEL+LFT AVERWD     +QLP YMK+CF ALYN 
Sbjct:   339 RRMSAMVNCLLTSIDDVYDVYGTLDELELFTDAVERWDAT-TTEQLPYYMKLCFHALYNS 397

Query:    62 VSEVADYILKQQDSDQLLR-IKNSWLGLLQAFLVEAKWYHNKYAPTLEEYLKNAALSISG 120
             V+E+    L+ Q+   ++  +K +W    +++LVEAKWY++ Y PTL+EY++NA +S++ 
Sbjct:   398 VNEMGFIALRDQEVGMIIPYLKKAWADQCKSYLVEAKWYNSGYIPTLQEYMENAWISVTA 457

Query:   121 PLITITAYISATNPIIEKELEYLESNPDLIQWSSRILRLLNDLGTSSDEIQRGDVSKSIQ 180
             P++ + AY    NPI ++ LE+L+ +PD+I+ SS I+RL +DLGTSSDE++RGDV KSIQ
Sbjct:   458 PVMLLHAYAFTANPITKEALEFLQDSPDIIRISSMIVRLEDDLGTSSDELKRGDVPKSIQ 517

Query:   181 CYMHETGASEEAAREHIKDLIRQMWKKVMMDVCRASNDKDPPLFQTKNEIILNPLRVAHF 240
             CYMHETG SE+ AREHI+DLI + W K  M+  R  N   P L      I +N +R++  
Sbjct:   518 CYMHETGVSEDEAREHIRDLIAETWMK--MNSARFGNP--PYLPDVFIGIAMNLVRMSQC 573

Query:   241 IYLHGDGHGAQKQETMDEVFALLFQPIP 268
             +YL+GDGHG Q + T D V +L   PIP
Sbjct:   574 MYLYGDGHGVQ-ENTKDRVLSLFIDPIP 600
GO:0000287 "magnesium ion binding" evidence=IDA
GO:0010333 "terpene synthase activity" evidence=IDA
GO:0033383 "geranyl diphosphate metabolic process" evidence=IDA
UNIPROTKB|B3TPQ7 B3TPQ7 "Alpha-terpineol synthase, chloroplastic" [Magnolia grandiflora (taxid:3406)] Back     alignment and assigned GO terms
UNIPROTKB|J7LQ09 J7LQ09 "Trans-alpha-bergamotene synthase" [Phyla dulcis (taxid:542674)] Back     alignment and assigned GO terms
TAIR|locus:2829283 TPS-CIN ""terpene synthase-like sequence-1,8-cineole"" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2086014 TPS-CIN ""terpene synthase-like sequence-1,8-cineole"" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2086004 AT3G25810 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2047510 TPS10 "terpene synthase 10" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|J7LH11 J7LH11 "(+)-epi-alpha-bisabolol synthase" [Phyla dulcis (taxid:542674)] Back     alignment and assigned GO terms
UNIPROTKB|Q5UB07 TPS4 "Tricyclene synthase TPS4, chloroplastic" [Medicago truncatula (taxid:3880)] Back     alignment and assigned GO terms
UNIPROTKB|E2E2P0 TPS2 "Gamma-terpinene synthase, chloroplastic" [Origanum vulgare (taxid:39352)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer4.2.30.766
3rd Layer4.2.3.n14LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00030956001
SubName- Full=Chromosome undetermined scaffold_53, whole genome shotgun sequence; (590 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query280
cd00684542 cd00684, Terpene_cyclase_plant_C1, Plant Terpene C 2e-99
cd00868284 cd00868, Terpene_cyclase_C1, Terpene cyclases, Cla 9e-79
pfam03936270 pfam03936, Terpene_synth_C, Terpene synthase famil 6e-73
PLN02279784 PLN02279, PLN02279, ent-kaur-16-ene synthase 3e-28
cd00385243 cd00385, Isoprenoid_Biosyn_C1, Isoprenoid Biosynth 7e-28
PLN0215096 PLN02150, PLN02150, terpene synthase/cyclase famil 3e-09
>gnl|CDD|173832 cd00684, Terpene_cyclase_plant_C1, Plant Terpene Cyclases, Class 1 Back     alignment and domain information 
 Score =  301 bits (772), Expect = 2e-99
 Identities = 124/266 (46%), Positives = 173/266 (65%), Gaps = 5/266 (1%)

Query: 1   SRRVLTIAGALVTVIDDIYDIYGTLDELDLFTYAVERWDINFAIKQLPDYMKICFFALYN 60
           +R  L    AL+TVIDD YD+YGTL+EL+LFT AVERWDI+ AI QLP+YMKI F AL N
Sbjct: 282 ARIALAKTIALITVIDDTYDVYGTLEELELFTEAVERWDIS-AIDQLPEYMKIVFKALLN 340

Query: 61  FVSEVADYILKQQDSDQLLRIKNSWLGLLQAFLVEAKWYHNKYAPTLEEYLKNAALSISG 120
            V+E+ + +LK+  S  +  +K +W  L++A+LVEAKW H  Y PT EEY++NA +SI  
Sbjct: 341 TVNEIEEELLKEGGSYVVPYLKEAWKDLVKAYLVEAKWAHEGYVPTFEEYMENALVSIGL 400

Query: 121 PLITITAYISATNPIIEKELEYLESNPDLIQWSSRILRLLNDLGTSSDEIQRGDVSKSIQ 180
             + +T+++   + + E+  E+LES P L++ SS I RL+ND+ T  DE++RGDV+ SI+
Sbjct: 401 GPLLLTSFLGMGDILTEEAFEWLESRPKLVRASSTIGRLMNDIATYEDEMKRGDVASSIE 460

Query: 181 CYMHETGASEEAAREHIKDLIRQMWKKVMMDVCRASNDKDPPLFQTKNEIILNPLRVAHF 240
           CYM E G SEE ARE IK +I   WK++  +  + S+D   P+ Q      LN  RV   
Sbjct: 461 CYMKEYGVSEEEAREEIKKMIEDAWKELNEEFLKPSSDVPRPIKQR----FLNLARVIDV 516

Query: 241 IYLHGDGHGAQKQETMDEVFALLFQP 266
            Y  GDG    + E  D + +LLF+P
Sbjct: 517 FYKEGDGFTHPEGEIKDHITSLLFEP 542

This CD includes a diverse group of monomeric plant terpene cyclases (Tspa-Tspf) that convert the acyclic isoprenoid diphosphates, geranyl diphosphate (GPP), farnesyl diphosphate (FPP), or geranylgeranyl diphosphate (GGPP) into cyclic monoterpenes, diterpenes, or sesquiterpenes, respectively; a few form acyclic species. Terpnoid cyclases are soluble enzymes localized to the cytosol (sesquiterpene synthases) or plastids (mono- and diterpene synthases). All monoterpene and diterpene synthases have restrict substrate specificity, however, some sesquiterpene synthases can accept both FPP and GPP. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl diphosphates, via bridging Mg2+ ions (K+ preferred by gymnosperm cyclases), inducing conformational changes such that an N-terminal region forms a cap over the catalytic core. Loss of diphosphate from the enzyme-bound substrate (GPP, FPP, or GGPP) results in an allylic carbocation that electrophilically attacks a double bond further down the terpene chain to effect the first ring closure. Unlike monoterpene, sesquiterene, and macrocyclic diterpenes synthases, which undergo substrate ionization by diphosphate ester scission, Tpsc-like diterpene synthases catalyze cyclization reactions by an initial protonation step producing a copalyl diphosphate intermediate. These enzymes lack the aspartate-rich sequences mentioned above. Most diterpene synthases have an N-terminal, internal element (approx 210 aa) whose function is unknown. Length = 542
>gnl|CDD|173837 cd00868, Terpene_cyclase_C1, Terpene cyclases, Class 1 Back     alignment and domain information
>gnl|CDD|202816 pfam03936, Terpene_synth_C, Terpene synthase family, metal binding domain Back     alignment and domain information
>gnl|CDD|177918 PLN02279, PLN02279, ent-kaur-16-ene synthase Back     alignment and domain information
>gnl|CDD|173830 cd00385, Isoprenoid_Biosyn_C1, Isoprenoid Biosynthesis enzymes, Class 1 Back     alignment and domain information
>gnl|CDD|177811 PLN02150, PLN02150, terpene synthase/cyclase family protein Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 280
PLN02279784 ent-kaur-16-ene synthase 100.0
cd00684542 Terpene_cyclase_plant_C1 Plant Terpene Cyclases, C 100.0
cd00868284 Terpene_cyclase_C1 Terpene cyclases, Class 1. Terp 100.0
PLN02592800 ent-copalyl diphosphate synthase 100.0
PF03936270 Terpene_synth_C: Terpene synthase family, metal bi 100.0
cd00687303 Terpene_cyclase_nonplant_C1 Non-plant Terpene Cycl 100.0
PLN0215096 terpene synthase/cyclase family protein 100.0
cd00385243 Isoprenoid_Biosyn_C1 Isoprenoid Biosynthesis enzym 99.87
cd00686357 Terpene_cyclase_cis_trans_C1 Cis, Trans, Terpene C 98.15
PF06330376 TRI5: Trichodiene synthase (TRI5); InterPro: IPR02 98.09
cd00867236 Trans_IPPS Trans-Isoprenyl Diphosphate Synthases. 96.7
cd00685259 Trans_IPPS_HT Trans-Isoprenyl Diphosphate Synthase 94.26
PF00494267 SQS_PSY: Squalene/phytoene synthase; InterPro: IPR 93.69
COG0142322 IspA Geranylgeranyl pyrophosphate synthase [Coenzy 92.5
TIGR02749322 prenyl_cyano solanesyl diphosphate synthase. Membe 91.93
PLN02890422 geranyl diphosphate synthase 91.45
TIGR03465266 HpnD squalene synthase HpnD. The genes of this fam 91.03
PLN02857416 octaprenyl-diphosphate synthase 90.43
cd00683265 Trans_IPPS_HH Trans-Isoprenyl Diphosphate Synthase 86.83
TIGR02748319 GerC3_HepT heptaprenyl diphosphate synthase compon 86.5
TIGR03464266 HpnC squalene synthase HpnC. This family of genes 82.16
PLN02632334 phytoene synthase 80.78
CHL00151323 preA prenyl transferase; Reviewed 80.51
>PLN02279 ent-kaur-16-ene synthase Back     alignment and domain information 
Probab=100.00  E-value=5.2e-69  Score=539.85  Aligned_cols=265  Identities=27%  Similarity=0.409  Sum_probs=250.9

Q ss_pred             CchhhhhhhhhHhhhhhcccCCCCHHHHHHHHHHHHhcchhhhhhcCchHHHHHHHHHHhhHHHHHHHHHhcCCcchHHH
Q 038218            1 SRRVLTIAGALVTVIDDIYDIYGTLDELDLFTYAVERWDINFAIKQLPDYMKICFFALYNFVSEVADYILKQQDSDQLLR   80 (280)
Q Consensus         1 ~R~~~aK~~~l~~~iDD~yD~~gt~eEl~~~~~ai~rWd~~~~~~~lp~~mk~~~~~l~~~~~e~~~~~~~~~~~~~~~~   80 (280)
                      +|+++||.++|++++||+||+|||+|||+.||+||+|||.+..+++||+|||+||.+++++++|++.++.+.||+++++|
T Consensus       515 aRi~~aK~~~L~tviDD~fD~yGt~eEL~~ft~aVeRWD~~~~~~~lpeymki~f~aL~~t~nei~~~~~~~qGr~v~~~  594 (784)
T PLN02279        515 ARLSWAKNGVLTTVVDDFFDVGGSEEELENLIQLVEKWDVNGSPDFCSEQVEIIFSALRSTISEIGDKAFTWQGRNVTSH  594 (784)
T ss_pred             HHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhccccchhhCcHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHH
Confidence            69999999999999999999999999999999999999987346899999999999999999999999888899999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHhhcchhcchHHHHHHHHHhcCCCCCHHHHhhcccChHHHHHHHHHHHHh
Q 038218           81 IKNSWLGLLQAFLVEAKWYHNKYAPTLEEYLKNAALSISGPLITITAYISATNPIIEKELEYLESNPDLIQWSSRILRLL  160 (280)
Q Consensus        81 ~~~~~~~~~~a~l~Ea~w~~~g~~Ps~eEYl~~~~~s~g~~~~~~~~~~~~g~~l~~e~~~~~~~~~~l~~~~~~i~rL~  160 (280)
                      ++++|++++++|++||+|+++||+||+||||+|+.+|+|.+++...+++++|..+|+++++|. ++|+|+++++.++||+
T Consensus       595 l~~aW~~ll~ayl~EAeW~~~g~vPT~eEYL~na~vS~~l~~i~l~~~~~~G~~l~eev~e~~-~~~~L~~l~s~I~RLl  673 (784)
T PLN02279        595 IIKIWLDLLKSMLTEAQWSSNKSTPTLDEYMTNAYVSFALGPIVLPALYLVGPKLSEEVVDSP-ELHKLYKLMSTCGRLL  673 (784)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHhhchhhhhhHHHHHHHHHHhCCCCCHHHHhCc-chhHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999988777788889999999999995 8999999999999999


Q ss_pred             cCCCCChhhhhcCCCchhHHHHHhhC--CCCHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCchhHHHHHHhHHhhh
Q 038218          161 NDLGTSSDEIQRGDVSKSIQCYMHET--GASEEAAREHIKDLIRQMWKKVMMDVCRASNDKDPPLFQTKNEIILNPLRVA  238 (280)
Q Consensus       161 NDi~S~~~E~~~G~~~n~V~~yM~e~--g~s~eeA~~~i~~~i~~~~k~l~~n~~~l~~~~~~~~p~~~~~~~~n~~R~~  238 (280)
                      |||+||++|+++|++ |+|+|||+|+  |+|+|||+++++++|+++||+|  |+++++++.+ .+|++|+++++|++|++
T Consensus       674 NDI~S~e~E~~rG~~-nsV~cYMke~~~gvSeEEAi~~i~~~Ie~~wKeL--n~~~l~~~~~-~vp~~~~~~~ln~aR~~  749 (784)
T PLN02279        674 NDIRGFKRESKEGKL-NAVSLHMIHGNGNSTEEEAIESMKGLIESQRREL--LRLVLQEKGS-NVPRECKDLFWKMSKVL  749 (784)
T ss_pred             HhccccHhHHhCCCc-ceehhhhccCCCCCCHHHHHHHHHHHHHHHHHHH--HHHHhccCCC-CCCHHHHHHHHHHHHhh
Confidence            999999999999998 9999999987  8999999999999999999999  9999975322 79999999999999999


Q ss_pred             hhhcccCCCCCCCChhHHHHHHhhcccccccCCC
Q 038218          239 HFIYLHGDGHGAQKQETMDEVFALLFQPIPVENN  272 (280)
Q Consensus       239 ~~~Y~~~Dg~t~~~~~~k~~i~~l~~~pi~~~~~  272 (280)
                      ++||+++||||.+  +||++|++||++|||++.+
T Consensus       750 ~~~Y~~~Dgyt~~--~~k~~i~~ll~ePi~l~~~  781 (784)
T PLN02279        750 HLFYRKDDGFTSN--DMMSLVKSVIYEPVSLQEE  781 (784)
T ss_pred             hhheeCCCCCChH--HHHHHHHHHhccCCcCCcc
Confidence            9999999999953  7999999999999998654

>cd00684 Terpene_cyclase_plant_C1 Plant Terpene Cyclases, Class 1 Back     alignment and domain information
>cd00868 Terpene_cyclase_C1 Terpene cyclases, Class 1 Back     alignment and domain information
>PLN02592 ent-copalyl diphosphate synthase Back     alignment and domain information
>PF03936 Terpene_synth_C: Terpene synthase family, metal binding domain; InterPro: IPR005630 Sequences containing this domain belong to the terpene synthase family Back     alignment and domain information
>cd00687 Terpene_cyclase_nonplant_C1 Non-plant Terpene Cyclases, Class 1 Back     alignment and domain information
>PLN02150 terpene synthase/cyclase family protein Back     alignment and domain information
>cd00385 Isoprenoid_Biosyn_C1 Isoprenoid Biosynthesis enzymes, Class 1 Back     alignment and domain information
>cd00686 Terpene_cyclase_cis_trans_C1 Cis, Trans, Terpene Cyclases, Class 1 Back     alignment and domain information
>PF06330 TRI5: Trichodiene synthase (TRI5); InterPro: IPR024652 This family consists of several fungal trichodiene synthase proteins (EC:4 Back     alignment and domain information
>cd00867 Trans_IPPS Trans-Isoprenyl Diphosphate Synthases Back     alignment and domain information
>cd00685 Trans_IPPS_HT Trans-Isoprenyl Diphosphate Synthases, head-to-tail Back     alignment and domain information
>PF00494 SQS_PSY: Squalene/phytoene synthase; InterPro: IPR002060 Squalene synthase 2 Back     alignment and domain information
>COG0142 IspA Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism] Back     alignment and domain information
>TIGR02749 prenyl_cyano solanesyl diphosphate synthase Back     alignment and domain information
>PLN02890 geranyl diphosphate synthase Back     alignment and domain information
>TIGR03465 HpnD squalene synthase HpnD Back     alignment and domain information
>PLN02857 octaprenyl-diphosphate synthase Back     alignment and domain information
>cd00683 Trans_IPPS_HH Trans-Isoprenyl Diphosphate Synthases, head-to-head Back     alignment and domain information
>TIGR02748 GerC3_HepT heptaprenyl diphosphate synthase component II Back     alignment and domain information
>TIGR03464 HpnC squalene synthase HpnC Back     alignment and domain information
>PLN02632 phytoene synthase Back     alignment and domain information
>CHL00151 preA prenyl transferase; Reviewed Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query280
2ong_A543 Crystal Structure Of Of Limonene Synthase With 2- F 1e-59
2j5c_A569 Rational Conversion Of Substrate And Product Specif 4e-59
3n0f_A555 Crystal Structure Of Isoprene Synthase From Grey Po 2e-56
1n1b_A549 Crystal Structure Of (+)-bornyl Diphosphate Synthas 5e-54
3sae_A817 Structure Of A Three-Domain Sesquiterpene Synthase: 4e-37
3s9v_A785 Abietadiene Synthase From Abies Grandis Length = 78 2e-35
3g4d_A554 Crystal Structure Of (+)-Delta-Cadinene Synthase Fr 1e-32
3p5p_A764 Crystal Structure Of Taxadiene Synthase From Pacifi 2e-29
1hx9_A548 Crystal Structure Of Teas W273s Form 1 Length = 548 2e-26
5eat_A548 5-Epi-Aristolochene Synthase From Nicotiana Tabacum 2e-26
5eas_A548 5-Epi-Aristolochene Synthase From Nicotiana Tabacum 2e-26
3m01_A550 The Crystal Structure Of 5-Epi-Aristolochene Syntha 2e-26
5eau_A548 5-Epi-Aristolochene Synthase From Nicotiana Tabacum 3e-26
4di5_A535 Co-Crystal Structure Of Wt 5-Epi-Aristolochene Synt 3e-26
3lz9_A550 The Crystal Structure Of 5-Epi-Aristolochene Syntha 3e-26
1hxg_A548 Crystal Structure Of Teas W273sC440W Length = 548 3e-26
1hxc_A548 Crystal Structure Of Teas C440w Length = 548 3e-26
>pdb|2ONG|A Chain A, Crystal Structure Of Of Limonene Synthase With 2- Fluorogeranyl Diphosphate (Fgpp). Length = 543 Back     alignment and structure 
Iteration: 1

 Score =  226 bits (576), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 114/267 (42%), Positives = 174/267 (65%), Gaps = 5/267 (1%)
Query: 1   SRRVLTIAGALVTVIDDIYDIYGTLDELDLFTYAVERWDINFAIKQLPDYMKICFFALYN 60
           +R ++    AL+TVIDDIYD+YGTL+EL+ FT  + RWDIN +I QLPDYM++CF AL N
Sbjct: 281 ARIMMGKVNALITVIDDIYDVYGTLEELEQFTDLIRRWDIN-SIDQLPDYMQLCFLALNN 339
Query: 61  FVSEVADYILKQQDSDQLLRIKNSWLGLLQAFLVEAKWYHNKYAPTLEEYLKNAALSISG 120
           FV + +  ++K++  + +  ++ SW+ L   ++VEA+W++  + P+LEEYL+N+  SISG
Sbjct: 340 FVDDTSYDVMKEKGVNVIPYLRQSWVDLADKYMVEARWFYGGHKPSLEEYLENSWQSISG 399
Query: 121 PLITITAYISATNPIIEKELEYLESNPDLIQWSSRILRLLNDLGTSSDEIQRGDVSKSIQ 180
           P +    +   T+   ++ ++ L    DL++WSS +LRL +DLGTS +E+ RGDV KS+Q
Sbjct: 400 PCMLTHIFFRVTDSFTKETVDSLYKYHDLVRWSSFVLRLADDLGTSVEEVSRGDVPKSLQ 459
Query: 181 CYMHETGASEEAAREHIKDLIRQMWKKVMMDVCRASNDKDPPLFQTKNEIILNPLRVAHF 240
           CYM +  ASE  AR+H+K LI ++WKK  M+  R S  KD P  +      ++  R+A  
Sbjct: 460 CYMSDYNASEAEARKHVKWLIAEVWKK--MNAERVS--KDSPFGKDFIGCAVDLGRMAQL 515
Query: 241 IYLHGDGHGAQKQETMDEVFALLFQPI 267
           +Y +GDGHG Q      ++   LF+P 
Sbjct: 516 MYHNGDGHGTQHPIIHQQMTRTLFEPF 542
>pdb|2J5C|A Chain A, Rational Conversion Of Substrate And Product Specificity In A Monoterpene Synthase. Structural Insights Into The Molecular Basis Of Rapid Evolution. Length = 569 Back     alignment and structure
>pdb|3N0F|A Chain A, Crystal Structure Of Isoprene Synthase From Grey Poplar Leaves (Populus X Canescens) Length = 555 Back     alignment and structure
>pdb|1N1B|A Chain A, Crystal Structure Of (+)-bornyl Diphosphate Synthase From Sage Length = 549 Back     alignment and structure
>pdb|3SAE|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A Prospective Target For Advanced Biofuels Production Length = 817 Back     alignment and structure
>pdb|3S9V|A Chain A, Abietadiene Synthase From Abies Grandis Length = 785 Back     alignment and structure
>pdb|3G4D|A Chain A, Crystal Structure Of (+)-Delta-Cadinene Synthase From Gossypium Arboreum And Evolutionary Divergence Of Metal Binding Motifs For Catalysis Length = 554 Back     alignment and structure
>pdb|3P5P|A Chain A, Crystal Structure Of Taxadiene Synthase From Pacific Yew (Taxus Brevifolia) In Complex With Mg2+ And 13-Aza-13,14-Dihydrocopalyl Diphosphate Length = 764 Back     alignment and structure
>pdb|1HX9|A Chain A, Crystal Structure Of Teas W273s Form 1 Length = 548 Back     alignment and structure
>pdb|5EAT|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum With Substrate Analog Farnesyl Hydroxyphosphonate Length = 548 Back     alignment and structure
>pdb|5EAS|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum Length = 548 Back     alignment and structure
>pdb|3M01|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl Diphosphate Length = 550 Back     alignment and structure
>pdb|5EAU|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum Length = 548 Back     alignment and structure
>pdb|4DI5|A Chain A, Co-Crystal Structure Of Wt 5-Epi-Aristolochene Synthase From Nicotiana Tobaccum With Geraniline Length = 535 Back     alignment and structure
>pdb|3LZ9|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase M4 Mut Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl Diphospha Length = 550 Back     alignment and structure
>pdb|1HXG|A Chain A, Crystal Structure Of Teas W273sC440W Length = 548 Back     alignment and structure
>pdb|1HXC|A Chain A, Crystal Structure Of Teas C440w Length = 548 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query280
3g4d_A554 (+)-delta-cadinene synthase isozyme XC1; cyclase, 1e-77
3p5p_A764 Taxadiene synthase; class I and II terpene cyclase 4e-76
2ong_A543 4S-limonene synthase; monoterpene synthase, monote 3e-72
1n1b_A549 (+)-bornyl diphosphate synthase; terpene synthase 3e-72
3n0f_A555 Isoprene synthase; terpene cyclase fold, hemiterpe 4e-72
3m00_A550 Aristolochene synthase; plant terpenoid cyclase, l 1e-71
2j5c_A569 1,8-cineole synthase; terpene synthases, 1, monote 1e-70
3sdr_A817 Alpha-bisabolene synthase; lyase, terpene synthase 3e-70
3s9v_A785 Abietadiene synthase, chloroplastic; alpha bundle/ 2e-68
1ps1_A337 Pentalenene synthase; antibiotic biosynthesis, ses 6e-29
3pya_A727 ENT-copalyl diphosphate synthase, chloroplastic; c 2e-27
3kb9_A382 EPI-isozizaene synthase; terpenoid cyclase, alpha- 2e-25
3v1v_A433 2-MIB synthase, 2-methylisoborneol synthase; class 2e-08
1di1_A300 Aristolochene synthase; sesquiterpene cyclase, iso 3e-08
3bny_A320 Aristolochene synthase; sesquiterpene cyclase, iso 4e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-06
>3g4d_A (+)-delta-cadinene synthase isozyme XC1; cyclase, lyase, magnesium, metal-binding; 2.40A {Gossypium arboreum} PDB: 3g4f_A* Length = 554 Back     alignment and structure
 Score =  244 bits (624), Expect = 1e-77
 Identities = 75/269 (27%), Positives = 137/269 (50%), Gaps = 6/269 (2%)

Query: 1   SRRVLTIAGALVTVIDDIYDIYGTLDELDLFTYAVERWDINFAIKQLPDYMKICFFALYN 60
            R++LT   A+ +++DD YD Y T +EL  +T A+ERWD    I ++P+YMK  + AL +
Sbjct: 292 GRKMLTKVIAMASIVDDTYDSYATYEELIPYTNAIERWD-IKCIDEIPEYMKPSYKALLD 350

Query: 61  FVSEVADYILKQQDSDQLLRIKNSWLGLLQAFLVEAKWYHNKYAPTLEEYLKNAALSISG 120
              E+   + +     ++   KN+ + L Q++LVEAKW    Y P+ EE+  NA  +   
Sbjct: 351 VYEEMVQLVAEHGRQYRVEYAKNAMIRLAQSYLVEAKWTLQNYKPSFEEFKANALPTCGY 410

Query: 121 PLITITAYISATNPIIEKELEYLESNPDLIQWSSRILRLLNDLGTSSDEIQRGDVSKSIQ 180
            ++ IT+++   + +  +  ++  S+P +IQ S+ I R ++D+     + +R D   +I+
Sbjct: 411 AMLAITSFVGMGDIVTPETFKWAASDPKIIQASTIICRFMDDVAEHKFKHRREDDCSAIE 470

Query: 181 CYMHETGASEEAAREHIKDLIRQMWKKVMMDVCRASNDKDPPLFQTKNEIILNPLRVAHF 240
           CYM E G + + A +     +   WK +  +  + +      +        LN  RV   
Sbjct: 471 CYMEEYGVTAQEAYDVFNKHVESAWKDLNQEFLKPT-----EMPTEVLNRSLNLARVMDV 525

Query: 241 IYLHGDGHGAQKQETMDEVFALLFQPIPV 269
           +Y  GDG+    +     + +LL +PI +
Sbjct: 526 LYREGDGYTYVGKAAKGGITSLLIEPIAL 554
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A* Length = 764 Back     alignment and structure
>2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase, geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB: 2onh_A* Length = 543 Back     alignment and structure
>1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase; 2.00A {Salvia officinalis} SCOP: a.102.4.1 a.128.1.3 PDB: 1n1z_A* 1n20_A* 1n21_A* 1n22_A* 1n23_A* 1n24_A* Length = 549 Back     alignment and structure
>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A* Length = 555 Back     alignment and structure
>3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A* 1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A* Length = 550 Back     alignment and structure
>2j5c_A 1,8-cineole synthase; terpene synthases, 1, monoterpene, lyase; 1.95A {Salvia fruticosa} Length = 569 Back     alignment and structure
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A* Length = 817 Back     alignment and structure
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis} Length = 785 Back     alignment and structure
>1ps1_A Pentalenene synthase; antibiotic biosynthesis, sesquiterpene cyclase, lyase; 2.60A {Streptomyces SP} SCOP: a.128.1.4 PDB: 1hm7_A 1hm4_A Length = 337 Back     alignment and structure
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A* Length = 727 Back     alignment and structure
>3kb9_A EPI-isozizaene synthase; terpenoid cyclase, alpha-helical fold, farnesyl diphosphate, metal-binding, lyase, magnesium; HET: BTM; 1.60A {Streptomyces coelicolor} PDB: 3kbk_A 3lgk_A 3lg5_A* Length = 382 Back     alignment and structure
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433 Back     alignment and structure
>1di1_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid biosynthesis, lyase; 2.50A {Penicillium roqueforti} SCOP: a.128.1.4 PDB: 1dgp_A Length = 300 Back     alignment and structure
>3bny_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid, farnesyl diphosphate, magnesium, cyclization, lyase; HET: FPF; 1.89A {Aspergillus terreus} PDB: 2e4o_A 2oa6_A* 3bnx_A* 3cke_A* Length = 320 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query280
3g4d_A554 (+)-delta-cadinene synthase isozyme XC1; cyclase, 100.0
3m00_A550 Aristolochene synthase; plant terpenoid cyclase, l 100.0
3n0f_A555 Isoprene synthase; terpene cyclase fold, hemiterpe 100.0
1n1b_A549 (+)-bornyl diphosphate synthase; terpene synthase 100.0
2ong_A543 4S-limonene synthase; monoterpene synthase, monote 100.0
3p5p_A764 Taxadiene synthase; class I and II terpene cyclase 100.0
3sdr_A817 Alpha-bisabolene synthase; lyase, terpene synthase 100.0
2j5c_A569 1,8-cineole synthase; terpene synthases, 1, monote 100.0
3s9v_A785 Abietadiene synthase, chloroplastic; alpha bundle/ 100.0
1ps1_A337 Pentalenene synthase; antibiotic biosynthesis, ses 100.0
1di1_A300 Aristolochene synthase; sesquiterpene cyclase, iso 100.0
3kb9_A382 EPI-isozizaene synthase; terpenoid cyclase, alpha- 100.0
3bny_A320 Aristolochene synthase; sesquiterpene cyclase, iso 100.0
3pya_A727 ENT-copalyl diphosphate synthase, chloroplastic; c 100.0
3v1v_A433 2-MIB synthase, 2-methylisoborneol synthase; class 100.0
1yyq_A374 Trichodiene synthase; terpenoid cyclase fold, site 99.73
3acx_A293 Dehydrosqualene synthase; CRTM, carotenoid biosynt 93.1
3ipi_A295 Geranyltranstransferase; isoprene biosynthesis, he 92.89
3lmd_A360 Geranylgeranyl pyrophosphate synthase; isoprenyl d 92.44
3oyr_A345 Trans-isoprenyl diphosphate synthase; isoprenyl sy 92.11
3rmg_A334 Octaprenyl-diphosphate synthase; structural genomi 90.86
3mzv_A341 Decaprenyl diphosphate synthase; transferase, stru 89.83
4hd1_A294 Squalene synthase HPNC; MCSG, structural genomics, 88.72
3m0g_A297 Farnesyl diphosphate synthase; structural genomics 88.24
3ts7_A324 Geranyltranstransferase; isoprenoid synthesis, far 87.47
1wy0_A342 Geranylgeranyl pyrophosphate synthetase; pyrococcu 85.67
3p8l_A302 Geranyltranstransferase; isoprenyl synthase, struc 85.47
1rtr_A301 Geranyltranstransferase; 2.50A {Staphylococcus aur 85.25
3lsn_A304 Geranyltranstransferase; structural genomics, prot 85.05
3apz_A348 Geranyl diphosphate synthase; prenyltransferase, a 84.02
3p8r_A302 Geranyltranstransferase; isoprenyl synthase, struc 83.81
3lom_A313 Geranyltranstransferase; geranyltransferase, struc 83.53
2ftz_A284 Geranyltranstransferase; TM0161, structural GE joi 83.35
3pko_A334 Geranylgeranyl pyrophosphate synthase; isoprenyl d 83.0
4f62_A317 Geranyltranstransferase; enzyme function initiativ 82.82
2h8o_A335 Geranyltranstransferase; geranyltransferase,agroba 82.56
>3g4d_A (+)-delta-cadinene synthase isozyme XC1; cyclase, lyase, magnesium, metal-binding; 2.40A {Gossypium arboreum} PDB: 3g4f_A* Back     alignment and structure
Probab=100.00  E-value=7.2e-80  Score=599.71  Aligned_cols=263  Identities=29%  Similarity=0.512  Sum_probs=246.6

Q ss_pred             CchhhhhhhhhHhhhhhcccCCCCHHHHHHHHHHHHhcchhhhhhcCchHHHHHHHHHHhhHHHHHHHHHhcCCcchHHH
Q 038218            1 SRRVLTIAGALVTVIDDIYDIYGTLDELDLFTYAVERWDINFAIKQLPDYMKICFFALYNFVSEVADYILKQQDSDQLLR   80 (280)
Q Consensus         1 ~R~~~aK~~~l~~~iDD~yD~~gt~eEl~~~~~ai~rWd~~~~~~~lp~~mk~~~~~l~~~~~e~~~~~~~~~~~~~~~~   80 (280)
                      +|+++||+++|+|++||+||+|||+|||++||+||+|||++ ++++||+|||+||.+|+++++|++.++.+++|+++++|
T Consensus       292 ~R~~~aK~~~l~tviDD~yD~ygTleEl~~ft~ai~RWD~~-~~~~LPeymK~~f~al~~~~~e~~~~~~~~~~~~~~~y  370 (554)
T 3g4d_A          292 GRKMLTKVIAMASIVDDTYDSYATYEELIPYTNAIERWDIK-CIDEIPEYMKPSYKALLDVYEEMVQLVAEHGRQYRVEY  370 (554)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHCCGG-GGGGSCGGGHHHHHHHHHHHHHHHHHHGGGTCTHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHhcCcc-ccccCcHHHHHHHHHHHHHHHHHHHHHHHcCCcchHHH
Confidence            59999999999999999999999999999999999999999 99999999999999999999999999988888889999


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHhhcchhcchHHHHHHHHHhcCCCCCHHHHhhcccChHHHHHHHHHHHHh
Q 038218           81 IKNSWLGLLQAFLVEAKWYHNKYAPTLEEYLKNAALSISGPLITITAYISATNPIIEKELEYLESNPDLIQWSSRILRLL  160 (280)
Q Consensus        81 ~~~~~~~~~~a~l~Ea~w~~~g~~Ps~eEYl~~~~~s~g~~~~~~~~~~~~g~~l~~e~~~~~~~~~~l~~~~~~i~rL~  160 (280)
                      ++++|++++++|++||+|+++||+||+||||+||.+|+|++++++++++++|+.+|+++++|+.++|+|+++++.++||+
T Consensus       371 lk~~w~~l~~ayl~EAkW~~~gyvPT~EEYl~na~vSsg~~~l~~~~~~~mg~~lt~e~~e~~~~~p~i~~~~~~I~RL~  450 (554)
T 3g4d_A          371 AKNAMIRLAQSYLVEAKWTLQNYKPSFEEFKANALPTCGYAMLAITSFVGMGDIVTPETFKWAASDPKIIQASTIICRFM  450 (554)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHGGGSCHHHHHHHHHHTSCTTSCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHhccceeehHHHHHHHHHHhcCCCCCHHHHHhccccHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999888999999999999999


Q ss_pred             cCCCCChhhhhcCCCchhHHHHHhhCCCCHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCchhHHHHHHhHHhhhhh
Q 038218          161 NDLGTSSDEIQRGDVSKSIQCYMHETGASEEAAREHIKDLIRQMWKKVMMDVCRASNDKDPPLFQTKNEIILNPLRVAHF  240 (280)
Q Consensus       161 NDi~S~~~E~~~G~~~n~V~~yM~e~g~s~eeA~~~i~~~i~~~~k~l~~n~~~l~~~~~~~~p~~~~~~~~n~~R~~~~  240 (280)
                      |||+||++|+++|+++|+|+|||+|||+|+|+|+++++++++++||+|  |+++++++   ++|++|+++++|++|++++
T Consensus       451 NDI~S~k~E~~rG~van~V~cYMke~GvSeEeA~~~i~~~Ie~~wK~l--N~e~l~~~---~~p~~~~~~~~NlaR~~~~  525 (554)
T 3g4d_A          451 DDVAEHKFKHRREDDCSAIECYMEEYGVTAQEAYDVFNKHVESAWKDL--NQEFLKPT---EMPTEVLNRSLNLARVMDV  525 (554)
T ss_dssp             HHHHHHCC------CCCHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH--HHHHSSSC---SSCHHHHHHHHHHHHHHHH
T ss_pred             cccchhhhhhccCCccHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH--HHHHhcCC---CCCHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999  99999887   8999999999999999999


Q ss_pred             hcccCCCCCCCChhHHHHHHhhccccccc
Q 038218          241 IYLHGDGHGAQKQETMDEVFALLFQPIPV  269 (280)
Q Consensus       241 ~Y~~~Dg~t~~~~~~k~~i~~l~~~pi~~  269 (280)
                      +|+++||||.|+.++|++|++||++|||+
T Consensus       526 ~Y~~~Dg~t~~~~~~k~~i~~ll~~Pi~l  554 (554)
T 3g4d_A          526 LYREGDGYTYVGKAAKGGITSLLIEPIAL  554 (554)
T ss_dssp             HSCC-----CCCHHHHHHHHHHHTCCCCC
T ss_pred             HhcCCCCCCCccHHHHHHHHHHhcCCCCC
Confidence            99999999998888999999999999985
>3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A* 1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A* Back     alignment and structure
>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A* Back     alignment and structure
>1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase; 2.00A {Salvia officinalis} SCOP: a.102.4.1 a.128.1.3 PDB: 1n1z_A* 1n20_A* 1n21_A* 1n22_A* 1n23_A* 1n24_A* Back     alignment and structure
>2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase, geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB: 2onh_A* Back     alignment and structure
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A* Back     alignment and structure
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A* Back     alignment and structure
>2j5c_A 1,8-cineole synthase; terpene synthases, 1, monoterpene, lyase; 1.95A {Salvia fruticosa} Back     alignment and structure
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis} Back     alignment and structure
>1ps1_A Pentalenene synthase; antibiotic biosynthesis, sesquiterpene cyclase, lyase; 2.60A {Streptomyces SP} SCOP: a.128.1.4 PDB: 1hm7_A 1hm4_A Back     alignment and structure
>1di1_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid biosynthesis, lyase; 2.50A {Penicillium roqueforti} SCOP: a.128.1.4 PDB: 1dgp_A Back     alignment and structure
>3kb9_A EPI-isozizaene synthase; terpenoid cyclase, alpha-helical fold, farnesyl diphosphate, metal-binding, lyase, magnesium; HET: BTM; 1.60A {Streptomyces coelicolor} PDB: 3kbk_A 3lgk_A 3lg5_A* Back     alignment and structure
>3bny_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid, farnesyl diphosphate, magnesium, cyclization, lyase; HET: FPF; 1.89A {Aspergillus terreus} PDB: 2e4o_A 2oa6_A* 3bnx_A* 3cke_A* Back     alignment and structure
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A* Back     alignment and structure
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Back     alignment and structure
>1yyq_A Trichodiene synthase; terpenoid cyclase fold, site-directed mutant, pyrophosphate, lyase; 2.10A {Fusarium sporotrichioides} PDB: 1yj4_A 1yyr_A* 1yys_A* 1jfa_A 1jfg_A 2q9y_A* 2q9z_A 2ael_A* 2aek_A* 2aet_A 2ps7_A 2ps8_A 1kiy_A 1kiz_A 1yyt_A* 1yyu_A* 2ps5_A 2ps4_A 2ps6_A Back     alignment and structure
>3acx_A Dehydrosqualene synthase; CRTM, carotenoid biosynthesis, staphyloxanthin biosynthesis, transferase, head-TO-head condensation, inhibitor; HET: 673; 1.31A {Staphylococcus aureus} PDB: 2zcp_A* 2zcq_A* 2zcr_A* 2zcs_A* 2zy1_A* 3acw_A* 2zco_A* 3acy_A* 3npr_A* 3nri_A* 3tfn_A* 3tfp_A* 3tfv_A* 3adz_A* 3lgz_B* 3vjd_A* 3vje_A* 3ae0_A* 4ea2_A* 4e9u_A* ... Back     alignment and structure
>3ipi_A Geranyltranstransferase; isoprene biosynthesis, helical bundle, protein structure initiative II (PSI II), structural genomics, nysgxrc; 1.90A {Methanosarcina mazei} Back     alignment and structure
>3lmd_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, protein structure initiative, nysgrc; 1.90A {Corynebacterium glutamicum} PDB: 3q2q_A* Back     alignment and structure
>3oyr_A Trans-isoprenyl diphosphate synthase; isoprenyl synthase, PSI, protein structure initiative; HET: IPE; 2.00A {Caulobacter crescentus} Back     alignment and structure
>3rmg_A Octaprenyl-diphosphate synthase; structural genomics, protein structure initiative, isoprene biosynthesis, transferase; 2.30A {Bacteroides thetaiotaomicron} Back     alignment and structure
>3mzv_A Decaprenyl diphosphate synthase; transferase, structural genomics, PSI-2, protein structure initiative; 1.90A {Rhodobacter capsulatus} Back     alignment and structure
>4hd1_A Squalene synthase HPNC; MCSG, structural genomics, PSI-biology, midwest center for S genomics, transferase; 2.40A {Alicyclobacillus acidocaldarius subsp} Back     alignment and structure
>3m0g_A Farnesyl diphosphate synthase; structural genomics, protein structure initiative, NYSGXRC, biosynthesis, transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB: 3lvs_A Back     alignment and structure
>3ts7_A Geranyltranstransferase; isoprenoid synthesis, farnesyl diphosphate synthase; 1.94A {Methylococcus capsulatus} Back     alignment and structure
>1wy0_A Geranylgeranyl pyrophosphate synthetase; pyrococcus horikosh structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.20A {Pyrococcus horikoshii} Back     alignment and structure
>3p8l_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.00A {Enterococcus faecalis} Back     alignment and structure
>1rtr_A Geranyltranstransferase; 2.50A {Staphylococcus aureus} SCOP: a.128.1.1 Back     alignment and structure
>3lsn_A Geranyltranstransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; HET: MSE; 1.35A {Pseudomonas fluorescens} PDB: 3lji_A* 3p41_A* Back     alignment and structure
>3apz_A Geranyl diphosphate synthase; prenyltransferase, all alpha-helices fold, chroloplast, TRAN isoprenoid biosynthetic process; 2.60A {Arabidopsis thaliana} PDB: 3aq0_A* Back     alignment and structure
>3p8r_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.50A {Vibrio cholerae} SCOP: a.128.1.1 Back     alignment and structure
>3lom_A Geranyltranstransferase; geranyltransferase, structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Legionella pneumophila subsp} Back     alignment and structure
>2ftz_A Geranyltranstransferase; TM0161, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MLY; 1.90A {Thermotoga maritima} Back     alignment and structure
>3pko_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; HET: CIT; 1.98A {Lactobacillus brevis} PDB: 3n3d_A Back     alignment and structure
>4f62_A Geranyltranstransferase; enzyme function initiative, structural genomics; 2.10A {Marinomonas SP} Back     alignment and structure
>2h8o_A Geranyltranstransferase; geranyltransferase,agrobacterium tumefaciens, structural GEN PSI-2, protein structure initiative; 1.60A {Agrobacterium tumefaciens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 280
d1n1ba2328 a.128.1.3 (A:271-598) (+)-bornyl diphosphate synth 1e-83
d5easa2328 a.128.1.3 (A:221-548) 5-Epi-aristolochene synthase 5e-78
d1ps1a_311 a.128.1.4 (A:) Pentalenene synthase {Streptomyces 1e-36
d1di1a_300 a.128.1.4 (A:) Aristolochene synthase {Fungus (Pen 2e-27
>d1n1ba2 a.128.1.3 (A:271-598) (+)-bornyl diphosphate synthase {Garden sage (Salvia officinalis) [TaxId: 38868]} Length = 328 Back     information, alignment and structure

class: All alpha proteins
fold: Terpenoid synthases
superfamily: Terpenoid synthases
family: Terpenoid cyclase C-terminal domain
domain: (+)-bornyl diphosphate synthase
species: Garden sage (Salvia officinalis) [TaxId: 38868]

 Score =  252 bits (644), Expect = 1e-83
 Identities = 115/268 (42%), Positives = 161/268 (60%), Gaps = 7/268 (2%)

Query: 1   SRRVLTIAGALVTVIDDIYDIYGTLDELDLFTYAVERWDINFAIKQLPDYMKICFFALYN 60
            R++      L TVIDDIYD+YGTLDEL+LFT   +RWD   +I +LP YM++C++ ++N
Sbjct: 66  QRKMAATIIVLATVIDDIYDVYGTLDELELFTDTFKRWDTE-SITRLPYYMQLCYWGVHN 124

Query: 61  FVSEVADYILKQQDSDQLLRIKNSWLGLLQAFLVEAKWYHNKYAPTLEEYLKNAALSISG 120
           ++S+ A  ILK+     L  ++ S + L++A+  EAKWYH+ Y P+L+EYL  A +S++ 
Sbjct: 125 YISDAAYDILKEHGFFCLQYLRKSVVDLVEAYFHEAKWYHSGYTPSLDEYLNIAKISVAS 184

Query: 121 PLITITAYISATNPIIEKE-LEYLESNPDLIQWSSRILRLLNDLGTSSDEIQRGDVSKSI 179
           P I    Y +  N   +   ++ L    D++  +  ILRL +DLGTS  E+ RGDV K+I
Sbjct: 185 PAIISPTYFTFANASHDTAVIDSLYQYHDILCLAGIILRLPDDLGTSYFELARGDVPKTI 244

Query: 180 QCYMHETGASEEAAREHIKDLIRQMWKKVMMDVCRASNDKDPPLFQTKNEIILNPLRVAH 239
           QCYM ET ASEE A EH+K LIR+ WK  M     A       +         N  RVA 
Sbjct: 245 QCYMKETNASEEEAVEHVKFLIREAWKD-MNTAIAAGYPFPDGMVAG----AANIGRVAQ 299

Query: 240 FIYLHGDGHGAQKQETMDEVFALLFQPI 267
           FIYLHGDG G Q  +T + +  LLF+P 
Sbjct: 300 FIYLHGDGFGVQHSKTYEHIAGLLFEPY 327
>d5easa2 a.128.1.3 (A:221-548) 5-Epi-aristolochene synthase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 328 Back     information, alignment and structure
>d1ps1a_ a.128.1.4 (A:) Pentalenene synthase {Streptomyces sp., UC5319 [TaxId: 1931]} Length = 311 Back     information, alignment and structure
>d1di1a_ a.128.1.4 (A:) Aristolochene synthase {Fungus (Penicillium roqueforti) [TaxId: 5082]} Length = 300 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query280
d1n1ba2328 (+)-bornyl diphosphate synthase {Garden sage (Salv 100.0
d5easa2328 5-Epi-aristolochene synthase {Tobacco (Nicotiana t 100.0
d1ps1a_311 Pentalenene synthase {Streptomyces sp., UC5319 [Ta 100.0
d1di1a_300 Aristolochene synthase {Fungus (Penicillium roquef 99.96
d1kiya_354 Trichodiene synthase {Fusarium sporotrichioides [T 99.56
d1fpsa_348 Farnesyl diphosphate synthase (geranyltranstransfe 80.22
>d1n1ba2 a.128.1.3 (A:271-598) (+)-bornyl diphosphate synthase {Garden sage (Salvia officinalis) [TaxId: 38868]} Back     information, alignment and structure
class: All alpha proteins
fold: Terpenoid synthases
superfamily: Terpenoid synthases
family: Terpenoid cyclase C-terminal domain
domain: (+)-bornyl diphosphate synthase
species: Garden sage (Salvia officinalis) [TaxId: 38868]

Probab=100.00  E-value=6.2e-78  Score=553.32  Aligned_cols=262  Identities=44%  Similarity=0.727  Sum_probs=242.2

Q ss_pred             CchhhhhhhhhHhhhhhcccCCCCHHHHHHHHHHHHhcchhhhhhcCchHHHHHHHHHHhhHHHHHHHHHhcCCcchHHH
Q 038218            1 SRRVLTIAGALVTVIDDIYDIYGTLDELDLFTYAVERWDINFAIKQLPDYMKICFFALYNFVSEVADYILKQQDSDQLLR   80 (280)
Q Consensus         1 ~R~~~aK~~~l~~~iDD~yD~~gt~eEl~~~~~ai~rWd~~~~~~~lp~~mk~~~~~l~~~~~e~~~~~~~~~~~~~~~~   80 (280)
                      +|+++||.+++++++||+||+|||+|||+.||+||+|||.+ ++++||+|||+||.+++++++|++.++.+.+|++.++|
T Consensus        66 ~Ri~~aK~~~l~~iiDD~yD~ygt~eEl~~ft~ai~rWd~~-~~~~lp~ymk~~~~~l~~~~~e~~~~~~~~~g~~~~~~  144 (328)
T d1n1ba2          66 QRKMAATIIVLATVIDDIYDVYGTLDELELFTDTFKRWDTE-SITRLPYYMQLCYWGVHNYISDAAYDILKEHGFFCLQY  144 (328)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTCSS-GGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred             HHHHHHHHHHHHHhhhHHhcccCCHHHHHHHHHHHHhcCCc-ccccCcchHHHHHHHHHHHHHHHHHHHHHhcCchHHHH
Confidence            59999999999999999999999999999999999999999 99999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHhhcchhcchHHHHHHHHHhcCCCCC-HHHHhhcccChHHHHHHHHHHHH
Q 038218           81 IKNSWLGLLQAFLVEAKWYHNKYAPTLEEYLKNAALSISGPLITITAYISATNPII-EKELEYLESNPDLIQWSSRILRL  159 (280)
Q Consensus        81 ~~~~~~~~~~a~l~Ea~w~~~g~~Ps~eEYl~~~~~s~g~~~~~~~~~~~~g~~l~-~e~~~~~~~~~~l~~~~~~i~rL  159 (280)
                      ++++|++++++|++||+|+++||+||+||||+++.+|+|++++++++++++|+.++ +++++|+.++|+++++++.|+||
T Consensus       145 lk~~w~~l~~ayl~EakW~~~g~vPt~eEYl~~~~vS~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~i~RL  224 (328)
T d1n1ba2         145 LRKSVVDLVEAYFHEAKWYHSGYTPSLDEYLNIAKISVASPAIISPTYFTFANASHDTAVIDSLYQYHDILCLAGIILRL  224 (328)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTCHHHHHHHHHTTSTTCCCCHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHhhceehhhHHHHHHHHHHhCCCccchHHHHHHHhccHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999998665 55799999999999999999999


Q ss_pred             hcCCCCChhhhhcCCCchhHHHHHhhCCCCHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCchhHHHHHHhHHhhhh
Q 038218          160 LNDLGTSSDEIQRGDVSKSIQCYMHETGASEEAAREHIKDLIRQMWKKVMMDVCRASNDKDPPLFQTKNEIILNPLRVAH  239 (280)
Q Consensus       160 ~NDi~S~~~E~~~G~~~n~V~~yM~e~g~s~eeA~~~i~~~i~~~~k~l~~n~~~l~~~~~~~~p~~~~~~~~n~~R~~~  239 (280)
                      +|||+||++|++||+++|+|+|||+|+|+|+|+|+++++++|++.||++  |+++++++   ++|++|+++++|++|+++
T Consensus       225 ~nDi~~~~~E~~rg~~~s~v~cymke~~~s~eeA~~~i~~~ie~~wk~l--n~e~l~~~---~vp~~~~~~~ln~aR~~~  299 (328)
T d1n1ba2         225 PDDLGTSYFELARGDVPKTIQCYMKETNASEEEAVEHVKFLIREAWKDM--NTAIAAGY---PFPDGMVAGAANIGRVAQ  299 (328)
T ss_dssp             HHHHC---------CCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH--HHHHHTCC---SSCHHHHHHHHHHHHHHH
T ss_pred             HhhhhhHHHHHhcCCcchHHHHHhccCCCCHHHHHHHHHHHHHHHHHHH--HHHHcCCC---CCCHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999  99999987   899999999999999999


Q ss_pred             hhcccCCCCCCCChhHHHHHHhhcccccc
Q 038218          240 FIYLHGDGHGAQKQETMDEVFALLFQPIP  268 (280)
Q Consensus       240 ~~Y~~~Dg~t~~~~~~k~~i~~l~~~pi~  268 (280)
                      ++|++|||||+|++.+|++|++||++||.
T Consensus       300 ~~Y~~~Dgyt~~~~~~k~~I~~ll~ePvs  328 (328)
T d1n1ba2         300 FIYLHGDGFGVQHSKTYEHIAGLLFEPYA  328 (328)
T ss_dssp             HHTTTSCCC----CHHHHHHHHHHTSCCC
T ss_pred             HHhcCCCCCCCCcHHHHHHHHHHhccCCC
Confidence            99999999999877899999999999984
>d5easa2 a.128.1.3 (A:221-548) 5-Epi-aristolochene synthase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Back     information, alignment and structure
>d1ps1a_ a.128.1.4 (A:) Pentalenene synthase {Streptomyces sp., UC5319 [TaxId: 1931]} Back     information, alignment and structure
>d1di1a_ a.128.1.4 (A:) Aristolochene synthase {Fungus (Penicillium roqueforti) [TaxId: 5082]} Back     information, alignment and structure
>d1kiya_ a.128.1.5 (A:) Trichodiene synthase {Fusarium sporotrichioides [TaxId: 5514]} Back     information, alignment and structure
>d1fpsa_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure