Citrus Sinensis ID: 038269

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790--
Protein Sequence
MSHNSSKNGTSPAQKCKDFVGVTFADGSGKIVGLLLAYVLTNLAHHLLKPMHQPRITSDIVIGLFLGNIQPIRNGFELEMIQTLNYIVEFGMICYMFVLGLEMDPYVIFKPPTRDAIVAYGGMLSTFILGCSLTPFLHYSTHRKIVVAITLSFTLAGSGSHILTRVITNLKIGKSDIGKLGMAAGIHSDMITMLIICIGAVFVLPQGNNTQEQIQSAIKMSASLIFQSVFAAKVSPVFMNWINNENPEGKAMKGTHLVLSLAFMVAVCSCSPFYGYSPILSAFMAGIFFPSEGRMSKWTVGKVNYLLSTLYYPIFFFWMGFHAKLFTFEADTLGTWGRFFFLIVISTAGKVVGTVICGLMLGFHWPESVSLGLLLSAKGHFYIFLAIMGAVHNYITHTTAASLVIMIFFTIVHTPFVVQNIIGRARKHAPTKRMALQWLDPSNQLQILLCLHGSQNITSTLNFLEISRGTANPGVAVYVTDMIELTDQIAATLVQNEGIDTVTVTDKAVMEMREEITTAVQSYVDENGGGITLKRMLALSTFSGMPQDICILAEDLMVSLIILPFHKRQLEDGTLDEGHPGFRYVNRKLLRNATCSVGILVDRGFGSIENISRSQAASLNVAVIFIGGKDDREALAYASRVARHPAVKLTVIRFLLDNSENPQRRAATYKDNTAELEEEMKIDDECFAEFYERQVAEGHVAYAEKHLANSSETFATLRSLEGQYALIIVGRGERANSILTVGMNDWQQCPELGPIGDVLSGSDFLVRTSVLIIKQHDFKGELDGLDEDFSVM
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHcccccEEEHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHcccEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHccHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccEEEEEEEcccccHHHHHHHHHHccccccccEEEEEEEEccccccHHHHHHcccccccccccHHHHHHcHHHHHHHHHHHHHccccEEEEEEEEEcccccHHHHHHHHHHHHcccEEEEccccccccccccccccccHHHHHHHHHHHccccEEEEEccccccccccccccccccEEEEEEcccccHHHHHHHHHHHHHcccEEEEEEEEEccccccccccccccccccHHHHHHHHHcHHHHHHHHHHHHccccEEEEEEEEccHHHHHHHHHHccccccEEEEccccccccHHHcccccccccccccHHHHHHHcccccccccEEEEEEccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccEccccccccccccccccccHcHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHEcHHHHcccccccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHEEEEHHHHHcHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHccHHccccccccccccccEEEEEEEccccccHHHHHHHHHccccccccEEEEEEEEEEccccccHHEEEcccccccccccccccccHHHHHHHHHHHHHHccccEEEEEEEEEcccHHHHHHHHHHHHHccEEEEEEEcccccccccccccccHHHHHHHHHHHHccccEEEEEEEccccccccccccccccEEEEEEEEccccHHHHHHHHHHHHHcccEEEEEEEEEccccccccccccccccccccHHHHHHHcHHHHHHHHHHHcccccEEEEEEEEccHHHHHHHHHHHcccccEEEEEccccccccHHcccHcHHHccccccccHHcccccccccEEEEEEEEEcccccccccccccccc
Coil and Loop (DISEMBL)
mshnsskngtspaqkckdfvgvtfadgsGKIVGLLLAYVLTNLAHhllkpmhqpritsDIVIGLFlgniqpirnGFELEMIQTLNYIVEFGMICYMFVLglemdpyvifkpptrDAIVAYGGMLSTFILgcsltpflhySTHRKIVVAITLSFtlagsgshiLTRVITnlkigksdigklgmaagIHSDMITMLIICIGAvfvlpqgnntQEQIQSAIKMSASLIFQSVFAAKVSPVFMNwinnenpegkamkgTHLVLSLAFMVAVcscspfygyspilsafmagiffpsegrmskwtvGKVNYLLSTLYYPIFFFWMGFHAKLFTfeadtlgtwgRFFFLIVISTAGKVVGTVICGLMLgfhwpesvSLGLLLSAKGHFYIFLAIMGAVHNYITHTTAASLVIMIFFTIVHTPFVVQNIIGrarkhaptkrmalqwldpsnQLQILLCLHGSQNITSTLNFLEIsrgtanpgvaVYVTDMIELTDQIAATLVQnegidtvtVTDKAVMEMREEITTAVQSYVDENGGGITLKRMLALstfsgmpqDICILAEDLMVSLIILPfhkrqledgtldeghpgfryvNRKLLRNATCSVgilvdrgfgsienISRSQAASLNVAVIFIGGKDDREALAYASRVARHPAVKLTVIRFLLdnsenpqrraatyKDNTAELEEEMKIDDECFAEFYERQVAEGHVAYAEKHLANSSETFATLRSLEGQYALIIVGRGERANSILTVgmndwqqcpelgpigdvlsgsdflvRTSVLIIKQHdfkgeldgldedfsvm
Flexible Loop (DISEMBL)
mshnsskngtspaqkcKDFVGVTFADGSGKIVGLLLAYVLTNLAHHLLKPMHQPRITSDIVIGLFLGNIQPIRNGFELEMIQTLNYIVEFGMICYMFVLGLEMDPYVIFKPPTRDAIVAYGGMLSTFILGCSLTPFLHYSTHRKIVVAITLSFTLAGSGSHILTRVITNLKIGKSDIGKLGMAAGIHSDMITMLIICIGAVFVLPQGNNTQEQIQSAIKMSASLIFQSVFAAKVSPVFMNWINNENPEGKAMKGTHLVLSLAFMVAVCSCSPFYGYSPILSAFMAGIFFPSEGRMSKWTVGKVNYLLSTLYYPIFFFWMGFHAKLFTFEADTLGTWGRFFFLIVISTAGKVVGTVICGLMLGFHWPESVSLGLLLSAKGHFYIFLAIMGAVHNYITHTTAASLVIMIFFTIVHTPFVVQNIIGRARKHAPTKRMALQWLDPSNQLQILLCLHGSQNITSTLNFLEISRGTANPGVAVYVTDMIELTDQIAAtlvqnegidtVTVTDKAVMEMREEITTAVQSYVDENGGGITLKRMLALSTFSGMPQDICILAEDLMVSLIILPFHKRQLEDGTLDEGHPGFRYVNRKLLRNATCSVGILVDRGFGSIENISRSQAASLNVAVIFIGGKDDREALAYAsrvarhpavkLTVIRflldnsenpqrraaTYKDNTAELEEEMKIDDECFAEFYERQVAEGHVAYAEKHLANSSETFATLRSLEGQYALIIVGRGERANSILTVGMNDWQQCPELGPIGDVLSGSDFLVRTSVLIIkqhdfkgeldgldedfsvm
Low Complexity Region (SEG)
MSHNSSKNGTSPAQKCKDFVGVTFADGSGKIVGLLLAYVLTNLAHHLLKPMHQPRITSDIVIGLFLGNIQPIRNGFELEMIQTLNYIVEFGMICYMFVLGLEMDPYVIFKPPTRDAIVAYGGMLSTFILGCSLTPFLHYSTHRKIVVAITLSFTLAGSGSHILTRVITNLKIGKSDIGKLGMAAGIHSDMITMLIICIGAVFVLPQGNNTQEQIQSAIKMSASLIFQSVFAAKVSPVFMNWINNENPEGKAMKGTHLVLSLAFMVAVCSCSPFYGYSPILSAFMAGIFFPSEGRMSKWTVGKVNYLLSTLYYPIFFFWMGFHAKLFTFEADTLGTWGRFFFLIVISTAGKVVGTVICGLMLGFHWPESVSLGLLLSAKGHFYIFLAIMGAVHNYITHTTAASLVIMIFFTIVHTPFVVQNIIGRARKHAPTKRMALQWLDPSNQLQILLCLHGSQNITSTLNFLEISRGTANPGVAVYVTDMIELTDQIAATLVQNEGIDTVTVTDKAVMEMREEITTAVQSYVDENGGGITLKRMLALSTFSGMPQDICILAEDLMVSLIILPFHKRQLEDGTLDEGHPGFRYVNRKLLRNATCSVGILVDRGFGSIENISRSQAASLNVAVIFIGGKDDREALAYASRVARHPAVKLTVIRFLLDNSENPQRRAATYKDNTAELEEEMKIDDECFAEFYERQVAEGHVAYAEKHLANSSETFATLRSLEGQYALIIVGRGERANSILTVGMNDWQQCPELGPIGDVLSGSDFLVRTSVLIIKQHDFKGELDGLDEDFSVM
Disordered region (IsUnstruct)
***************CKDFVGVTFADGSGKIVGLLLAYVLTNLAHHLLKPMHQPRITSDIVIGLFLGNIQPIRNGFELEMIQTLNYIVEFGMICYMFVLGLEMDPYVIFKPPTRDAIVAYGGMLSTFILGCSLTPFLHYSTHRKIVVAITLSFTLAGSGSHILTRVITNLKIGKSDIGKLGMAAGIHSDMITMLIICIGAVFVLPQGNNTQEQIQSAIKMSASLIFQSVFAAKVSPVFMNWINNENPEGKAMKGTHLVLSLAFMVAVCSCSPFYGYSPILSAFMAGIFFPSEGRMSKWTVGKVNYLLSTLYYPIFFFWMGFHAKLFTFEADTLGTWGRFFFLIVISTAGKVVGTVICGLMLGFHWPESVSLGLLLSAKGHFYIFLAIMGAVHNYITHTTAASLVIMIFFTIVHTPFVVQNIIGRARKHAPTKRMALQWLDPSNQLQILLCLHGSQNITSTLNFLEISRGTANPGVAVYVTDMIELTDQIAATLVQNEGIDTVTVTDKAVMEMREEITTAVQSYVDENGGGITLKRMLALSTFSGMPQDICILAEDLMVSLIILPFHKRQLEDGTLDEGHPGFRYVNRKLLRNATCSVGILVDRGFGSIENISRSQAASLNVAVIFIGGKDDREALAYASRVARHPAVKLTVIRFLLD***********************KIDDECFAEFYERQVAEGHVAYAEKHLANSSETFATLRSLEGQYALIIVGRGERANSILTVGMNDWQQCPELGPIGDVLSGSDFLVRTSVLIIKQHDFKG************
Disordered Region (DISOPRED)
******************FVGVTFADGSGKIVGLLLAYVLTNLAHHLLKPMHQPRITSDIVIGLFLGNIQPIRNGFELEMIQTLNYIVEFGMICYMFVLGLEMDPYVIFKPPTRDAIVAYGGMLSTFILGCSLTPFLHYSTHRKIVVAITLSFTLAGSGSHILTRVITNLKIGKSDIGKLGMAAGIHSDMITMLIICIGAVFVLPQGNNTQEQIQSAIKMSASLIFQSVFAAKVSPVFMNWINNENPEGKAMKGTHLVLSLAFMVAVCSCSPFYGYSPILSAFMAGIFFPSEGRMSKWTVGKVNYLLSTLYYPIFFFWMGFHAKLFTFEADTLGTWGRFFFLIVISTAGKVVGTVICGLMLGFHWPESVSLGLLLSAKGHFYIFLAIMGAVHNYITHTTAASLVIMIFFTIVHTPFVVQNIIGRA***********************LCLHGSQNITSTLNFL***********AVYVTDMIELTD*****************************TTAVQSYVDENGGGITLKRMLALSTFSGMPQDICILAEDLMVSLIILPFHKRQ***********GFRYVNRKLLRNATCSVGILVDRGFG**********ASLNVAVIFIGGKDDREALAYASRVARHPAVKLTVIRFLLDN*********************MKIDDECFAEFYERQVAEGHVAYAEKHLANSSETFATLRSLEGQYALIIVGRGE*************QQCPELGPIGDVLSGSDFLVRTSVLIIKQHDFKGELDGLDEDFSVM
Disordered Region (DISEMBL)
**************KCKDFVGVTFADGSGKIVGLLLAYVLTNLAHHLLKPMHQPRITSDIVIGLFLGNIQPIRNGFELEMIQTLNYIVEFGMICYMFVLGLEMDPYVIFKPPTRDAIVAYGGMLSTFILGCSLTPFLHYSTHRKIVVAITLSFTLAGSGSHILTRVITNLKIGKSDIGKLGMAAGIHSDMITMLIICIGAVFVLPQGNNTQEQIQSAIKMSASLIFQSVFAAKVSPVFMNWINNENPEGKAMKGTHLVLSLAFMVAVCSCSPFYGYSPILSAFMAGIFFPSEGRMSKWTVGKVNYLLSTLYYPIFFFWMGFHAKLFTFEADTLGTWGRFFFLIVISTAGKVVGTVICGLMLGFHWPESVSLGLLLSAKGHFYIFLAIMGAVHNYITHTTAASLVIMIFFTIVHTPFVVQNIIGRARKHAPTKRMALQWLDPSNQLQILLCLHGSQNITSTLNFLEISRGTANPGVAVYVTDMIELTDQIAATLVQNEGIDTVTVTDKAVMEMREEITTAVQSYVDENGGGITLKRMLALSTFSGMPQDICILAEDLMVSLIILPFHKRQLEDGTLDEGHPGFRYVNRKLLRNATCSVGILVDRGFGSIENISRSQAASLNVAVIFIGGKDDREALAYASRVARHPAVKLTVIRFLLDNSENPQRRAATYKDNTAELEEEMKIDDECFAEFYERQVAEGHVAYAEKHLANSSETFATLRSLEGQYALIIVGRGERANSILTVGMNDWQQCPELGPIGDVLSGSDFLVRTSVLIIKQHDFKGELDGLDEDFSVM
Disordered Region (DISPRO)
**H*SSKNGTSPAQKCKDFVGVTFADGSGKIVGLLLAYVLTNLAHHLLKPMHQPRITSDIVIGLFLGNIQPIRNGFELEMIQTLNYIVEFGMICYMFVLGLEMDPYVIFKPPTRDAIVAYGGMLSTFILGCSLTPFLHYSTHRKIVVAITLSFTLAGSGSHILTRVITNLKIGKSDIGKLGMAAGIHSDMITMLIICIGAVFVLPQGNNTQEQIQSAIKMSASLIFQSVFAAKVSPVFMNWINNENPEGKAMKGTHLVLSLAFMVAVCSCSPFYGYSPILSAFMAGIFFPSEGRMSKWTVGKVNYLLSTLYYPIFFFWMGFHAKLFTFEADTLGTWGRFFFLIVISTAGKVVGTVICGLMLGFHWPESVSLGLLLSAKGHFYIFLAIMGAVHNYITHTTAASLVIMIFFTIVHTPFVVQNIIGRARKHAPTKRMALQWLDPSNQLQILLCLHGSQNITSTLNFLEISRGTANPGVAVYVTDMIELTDQIAATLVQNEG************EMREEITTAVQSYVDENGGGITLKRMLALSTFSGMPQDICILAEDLMVSLIILPFHKRQLEDGTLDEGHPGFRYVNRKLLRNATCSVGILVDRGFGS******SQAASLNVAVIFIGGKDDREALAYASRVARHPAVKLTVIRFLLDN****************ELEEEMKIDDECFAEFYERQVAEGHVAYAEKHLANSSETFATLRSLEGQYALIIVGRGERANSILTVGMNDWQQCPELGPIGDVLSGSDFLVRTSVLIIKQHDFK*************
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSHNSSKNGTSPAQKCKDFVGVTFADGSGKIVGLLLAYVLTNLAHHLLKPMHQPRITSDIVIGLFLGNIQPIRNGFELEMIQTLNYIVEFGMICYMFVLGLEMDPYVIFKPPTRDAIVAYGGMLSTFILGCSLTPFLHYSTHRKIVVAITLSFTLAGSGSHILTRVITNLKIGKSDIGKLGMAAGIHSDMITMLIICIGAVFVLPQGNNTQEQIQSAIKMSASLIFQSVFAAKVSPVFMNWINNENPEGKAMKGTHLVLSLAFMVAVCSCSPFYGYSPILSAFMAGIFFPSEGRMSKWTVGKVNYLLSTLYYPIFFFWMGFHAKLFTFEADTLGTWGRFFFLIVISTAGKVVGTVICGLMLGFHWPESVSLGLLLSAKGHFYIFLAIMGAVHNYITHTTAASLVIMIFFTIVHTPFVVQNIIGRARKHAPTKRMALQWLDPSNQLQILLCLHGSQNITSTLNFLEISRGTANPGVAVYVTDMIELTDQIAATLVQNEGIDTVTVTDKAVMEMREEITTAVQSYVDENGGGITLKRMLALSTFSGMPQDICILAEDLMVSLIILPFHKRQLEDGTLDEGHPGFRYVNRKLLRNATCSVGILVDRGFGSIENISRSQAASLNVAVIFIGGKDDREALAYASRVARHPAVKLTVIRFLLDNSENPQRRAATYKDNTAELEEEMKIDDECFAEFYERQVAEGHVAYAEKHLANSSETFATLRSLEGQYALIIVGRGERANSILTVGMNDWQQCPELGPIGDVLSGSDFLVRTSVLIIKQHDFKGELDGLDEDFSVM
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	792	2.2.26 [Sep-21-2011]
Q8L709	801	Cation/H(+) antiporter 28	yes	no	0.988	0.977	0.543	0.0
Q9SIT5	821	Cation/H(+) antiporter 15	no	no	0.905	0.873	0.317	1e-104
Q8VYD4	867	Cation/H(+) antiporter 23	no	no	0.901	0.823	0.289	2e-81
Q9FFR9	810	Cation/H(+) antiporter 18	no	no	0.957	0.935	0.281	2e-79
Q9LUN4	800	Cation/H(+) antiporter 19	no	no	0.925	0.916	0.280	3e-76
Q9SUQ7	820	Cation/H(+) antiporter 17	no	no	0.902	0.871	0.270	8e-72
Q9SKA9	832	Cation/H(+) antiporter 21	no	no	0.904	0.860	0.269	6e-69
Q9SA37	785	Cation/H(+) antiporter 1	no	no	0.890	0.898	0.257	3e-65
Q1HDT3	811	Cation/H(+) antiporter 16	no	no	0.936	0.914	0.263	5e-64
Q9M353	842	Cation/H(+) antiporter 20	no	no	0.877	0.825	0.268	1e-62

>sp|Q8L709|CHX28_ARATH Cation/H(+) antiporter 28 OS=Arabidopsis thaliana GN=CHX28 PE=2 SV=2

 Score =  859 bits (2220), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 436/802 (54%), Positives = 570/802 (71%), Gaps = 19/802 (2%)

Query: 8   NGTSPAQKCKD--FVGVTFADGSGKIVGLLLAYVLTNLAHHLLKPMHQPRITSDIVIGLF 65
           N T+    C D  ++ +   + + KI+  +  +V+  L H+L+KP+ QP +T+D  IGL 
Sbjct: 2   NSTTTKNVCGDKWYLNLDRPEEALKILVFIAIFVVRTLLHYLMKPLGQPYLTTDFAIGLI 61

Query: 66  LGNIQPIRNGFELEMIQTLNYIVEFGMICYMFVLGLEMDPYVIFKPPTRDAIVAYGGMLS 125
           LGNI   R  F      TLN I+EFGMIC+MFV+GLEM+P V+ +PPT+DA +AY  M++
Sbjct: 62  LGNIPRFRGAFSGPYSITLNNIIEFGMICHMFVMGLEMNPSVLLRPPTKDAFIAYTSMIT 121

Query: 126 TFILGCSLTPFLHYSTHRKIVVAITLSFTLAGSGSHILTRVITNLKIGKSDIGKLGMAAG 185
           TF+L    TPFLHY+     + ++ LS   + +GS ILTRVI NLKI KSD+GKL  AAG
Sbjct: 122 TFVLAFVTTPFLHYTKTSPYIFSLALSLMASSTGSPILTRVIANLKIRKSDLGKLASAAG 181

Query: 186 IHSDMITMLIICIGAVFVLPQGNNTQEQIQS---AIKMSASLIFQSVFAAKVSPVFMNWI 242
           +H+DMI+ L+ C G +F  P        +     A+ M    + Q  F + VSP+F+NW+
Sbjct: 182 VHTDMISTLLYCFGFIF-FPTEKPLARPLHRFFRALLMFCLFLAQVTFTSIVSPIFLNWV 240

Query: 243 NNENPEGKAMKGTHLVLSLAFMVAVCS---CSPFYGYSPILSAFMAGIFFPSEGRMSKWT 299
           NNENPEGK +KG+HLV+SLAF+V +CS     P   Y+PILSAF AG+F P++GRMSKW 
Sbjct: 241 NNENPEGKPLKGSHLVMSLAFVVLICSFPTWPPESMYNPILSAFTAGLFLPNKGRMSKWI 300

Query: 300 VGKVNYLLSTLYYPIFFFWMGFHAKLFTFEADTLGTWGRFFFLIVISTAGKVVGTVICGL 359
           + K+NYLLST++YPIFFFW+GF   +  F+      W RFF L+    AGKV GTV+CGL
Sbjct: 301 INKINYLLSTVFYPIFFFWVGFIIHMRNFDITDKMAWVRFFSLLGTVIAGKVTGTVLCGL 360

Query: 360 MLGFHWPESVSLGLLLSAKGHFYIFLAIMGAVHNYITHTTAASLVIMIFFTIVHTPFVVQ 419
           +LG+H PE+ SLGLLL+ KGHF+++LA +    N +  TT A ++ +I FT+V++PFVV 
Sbjct: 361 LLGYHVPETASLGLLLTTKGHFHVYLAALAIRTNRVKSTTGALIIFIIVFTVVYSPFVVM 420

Query: 420 NIIGRARKHAPTKRMALQWLDPSNQLQILLCLHGSQNITSTLNFLEISRGTANPGVAVYV 479
           +II RARK  P   MALQWLDP+ +L+IL+ LHG  NI STLN +EI  G   PG   Y 
Sbjct: 421 DIIKRARKRVPVHIMALQWLDPTTELRILIGLHGPHNIGSTLNVMEICHGGREPGSIFYA 480

Query: 480 TDMIELTDQIAATLVQNEGI----DTVTVTDKAVMEMREEITTAVQSYVD-ENGGGITLK 534
           TDM+ELTD+IAATL +  G     D+VTVTD++V EMRE IT AV  Y +  NG G+T++
Sbjct: 481 TDMVELTDEIAATLKKGGGAGQSNDSVTVTDRSVTEMRESITAAVNGYGELRNGQGVTVR 540

Query: 535 RMLALSTFSGMPQDICILAEDLMVSLIILPFHKRQLEDGTLDEGHPGFRYVNRKLLRNAT 594
           RMLALSTF  M  D+C LA++LMVS+IILPFHKR   DGTLD GH GFR+VNRK+L+NA 
Sbjct: 541 RMLALSTFVTMAHDVCGLADELMVSIIILPFHKRLNPDGTLDAGHAGFRHVNRKILKNAP 600

Query: 595 CSVGILVDRGFGSIENISRSQAASLNVAVIFIGGKDDREALAYASRVARHPAVKLTVIRF 654
           CSVGILVDR FG  E   R   AS+ +A+IFIGG+DDREALA+A++VARHPAVKL VIRF
Sbjct: 601 CSVGILVDRSFGQTEEAWRP-GASMGIAIIFIGGRDDREALAFAAQVARHPAVKLKVIRF 659

Query: 655 LLD-NSENPQRRAATY-KDNTAELEEEMKIDDECFAEFYERQVA-EGHVAYAEKHLANSS 711
           L D +S+N Q+R++   + +  + EEEMK+DDECFAEFYER +A  G V+Y EKHL NSS
Sbjct: 660 LEDKSSQNAQKRSSILNRASVVDQEEEMKLDDECFAEFYERYIAGGGRVSYMEKHLTNSS 719

Query: 712 ETFATLRSLEGQYALIIV-GRGERANSILTVGMNDWQQCPELGPIGDVLSGSDFLVRTSV 770
           ETF  L+SL+G+Y L+IV   G RA+S LT G+NDWQQCPELGPIGDVLSGSDF   TS+
Sbjct: 720 ETFTALKSLDGEYGLVIVGRGGGRASSGLTTGLNDWQQCPELGPIGDVLSGSDFSHNTSM 779

Query: 771 LIIKQHDFKGELDGLDEDFSVM 792
           LII+Q   +G+L+GL +DF+++
Sbjct: 780 LIIQQQRTRGQLEGLHDDFTIL 801

May operate as a cation/H(+) antiporter.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9SIT5|CHX15_ARATH Cation/H(+) antiporter 15 OS=Arabidopsis thaliana GN=CHX15 PE=2 SV=1

 Score =  381 bits (979), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 237/746 (31%), Positives = 398/746 (53%), Gaps = 29/746 (3%)

Query: 47  LLKPMHQPRITSDIVIGLFLG------NIQPIRNGFELEMIQTLNYIVEFGMICYMFVLG 100
           +LKP  QPR+ S+I+ G+ LG      + +     F    +  L  +   G++ ++F++G
Sbjct: 57  ILKPFRQPRVISEILGGIVLGPSVLGRSTKFAHTIFPQRSVMVLETMANVGLLYFLFLVG 116

Query: 101 LEMDPYVIFKPPTRDAIVAYGGMLSTFILGCSLTPFLHYSTHR--KIVVAITLSFTLAGS 158
           +EMD  V+ K   R   +A GGM+  F++G + +  +H S     +    + L   L+ +
Sbjct: 117 VEMDIMVVRKTGKRALTIAIGGMVLPFLIGAAFSFSMHRSEDHLGQGTYILFLGVALSVT 176

Query: 159 GSHILTRVITNLKIGKSDIGKLGMAAGIHSDMITMLIICIGAVFVLPQGNNTQEQIQSAI 218
              +L R++  LK+  ++IG++ M+A + +DM   +++ +          + +    S  
Sbjct: 177 AFPVLARILAELKLINTEIGRISMSAALVNDMFAWILLALAIALA----ESDKTSFASLW 232

Query: 219 KMSASLIFQSVFAAKVSPVFMNWINNENPEGKAMKGTHLVLSLAFMVAVCSCSPFYGYSP 278
            M +S +F +V    V P  + WI  + PEG+     H+ L L  ++     +   G   
Sbjct: 233 VMISSAVFIAVCVFVVRP-GIAWIIRKTPEGENFSEFHICLILTGVMISGFITDAIGTHS 291

Query: 279 ILSAFMAGIFFPSEGRMSKWTVGKVNYLLSTLYYPIFFFWMGFHAKLFTFEADTLGTWGR 338
           +  AF+ G+  P+ G +    + K+   +S L  P+FF   G    +   +     TW  
Sbjct: 292 VFGAFVFGLVIPN-GPLGLTLIEKLEDFVSGLLLPLFFAISGLKTNIAAIQGP--ATWLT 348

Query: 339 FFFLIVISTAGKVVGTVICGLMLGFHWPESVSLGLLLSAKGHFYIFLAIMGAVHNYITHT 398
            F +I ++ AGKV+GTVI     G    E ++LGLLL+ KG   + +  +G     +   
Sbjct: 349 LFLVIFLACAGKVIGTVIVAFFHGMPVREGITLGLLLNTKGLVEMIVLNVGKDQKVLDDE 408

Query: 399 TAASLVIM-IFFTIVHTPFVVQNIIGRARKHAPTKRMALQWLDPSNQLQILLCLHGSQNI 457
           T A++V++ +  T V TP +V  +    +K    KR  +Q   P ++L++L+C+H  +N+
Sbjct: 409 TFATMVLVALVMTGVITP-IVTILYKPVKKSVSYKRRTIQQTKPDSELRVLVCVHTPRNV 467

Query: 458 TSTLNFLEISRGTANPGVAVYVTDMIELTDQIAATLVQNEGIDTVTVTDKAVMEMREEIT 517
            + +N LE S  T    + +YV  ++ELT + +A L+ +    +            + I 
Sbjct: 468 PTIINLLEASHPTKRSPICIYVLHLVELTGRASAMLIVHNTRKSGRPALNRTQAQSDHII 527

Query: 518 TAVQSYVDENGGGITLKRMLALSTFSGMPQDICILAEDLMVSLIILPFHKRQLEDGTLDE 577
            A ++Y +++   + ++ + A+S +S M +D+C LAED  VS II+PFHK+Q  DG ++ 
Sbjct: 528 NAFENY-EQHAAFVAVQPLTAISPYSTMHEDVCSLAEDKRVSFIIIPFHKQQTVDGGMES 586

Query: 578 GHPGFRYVNRKLLRNATCSVGILVDRGFGSIENISRSQAASLNVAVIFIGGKDDREALAY 637
            +P +R VN+ LL N+ CSVGILVDRG      ++ S   SL VAV+F GG DDREALAY
Sbjct: 587 TNPAYRLVNQNLLENSPCSVGILVDRGLNGATRLN-SNTVSLQVAVLFFGGPDDREALAY 645

Query: 638 ASRVARHPAVKLTVIRFLLDNSENPQRRAATYKDNTAELE-------EEMKIDDECFAEF 690
           A R+A+HP + LTV+RF+ D  E+    A+T   N ++L+       ++ ++DD+    F
Sbjct: 646 AWRMAQHPGITLTVLRFIHD--EDEADTASTRATNDSDLKIPKMDHRKQRQLDDDYINLF 703

Query: 691 YERQVAEGHVAYAEKHLANSSETFATLRSLEGQYALIIVGRGERANSILTVGMNDWQQCP 750
                    + Y EK ++N  ET A +RS++  + L IVGRGE  +S LT G+ DW +CP
Sbjct: 704 RAENAEYESIVYIEKLVSNGEETVAAVRSMDSSHDLFIVGRGEGMSSPLTAGLTDWSECP 763

Query: 751 ELGPIGDVLSGSDFLVRTSVLIIKQH 776
           ELG IGD+L+ SDF    SVL+++Q+
Sbjct: 764 ELGAIGDLLASSDFAATVSVLVVQQY 789

May operate as a cation/H(+) antiporter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8VYD4|CHX23_ARATH Cation/H(+) antiporter 23, chloroplastic OS=Arabidopsis thaliana GN=CHX23 PE=1 SV=1

 Score =  304 bits (779), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 225/777 (28%), Positives = 390/777 (50%), Gaps = 63/777 (8%)

Query: 31  IVGLLLAYVLTNLAHHLLKPMHQPRITSDIVIGLF-----LGNIQ-PIRNGFELEMIQTL 84
           I  L +A +   + ++L +P++ P   + I+ GL      LGN +  I + F       L
Sbjct: 55  ITQLFVANLSYRVLYYLTRPLYLPPFVAQILCGLLFSPSVLGNTRFIIAHVFPYRFTMVL 114

Query: 85  NYIVEFGMICYMFVLGLEMDPYVIFKPPTRDAIVAYGGMLSTFILGCSLTPFLHY---ST 141
                  ++  +F+LGL MD  ++     +  I+A+ G+L    +G     FL+Y   + 
Sbjct: 115 ETFANLALVYNIFLLGLGMDLRMVRITELKPVIIAFTGLLVALPVGA----FLYYLPGNG 170

Query: 142 HRKIVVA--ITLSFTLAGSGSHILTRVITNLKIGKSDIGKLGMAAGIHSDMITMLIICIG 199
           H   +++  +  S  LA +    L R++ +LK+ +SD+G+  M A I +D+ T +++  G
Sbjct: 171 HPDKIISGCVFWSVALACTNFPDLARILADLKLLRSDMGRTAMCAAIVTDLCTWVLLVFG 230

Query: 200 -AVFVLPQGNNTQEQIQSAIKMSASLIFQSVFAAKVSPVFMNWINNENPEGKAMKGTHLV 258
            A F   +     + +   I  +A  +   +F  +     + WI  +  +   +  TH+ 
Sbjct: 231 FASF--SKSGTWNKMMPFVIITTAIFVLLCIFVIRPG---IAWIFAKTVKAGHVGDTHVW 285

Query: 259 LSLAFMVAVCSCSPFYGYSPILSAFMAGIFFPSEGRMSKWTVGKVNYLLSTLYYPIFFFW 318
             L  +V     +   G   I  AF+ G+  P +  +      K++  LS +  P+F+  
Sbjct: 286 FILGGVVLCGLITDACGVHSITGAFLFGLSIPHDHIIRNMIEEKLHDFLSGILMPLFYII 345

Query: 319 MGFHAKLFTFEADTLGTWGRFFFLIVISTA--GKVVGTVICGLMLGFHWPESVSLGLLLS 376
            G  A +       L    +F  ++VI ++   K+V TVI  L +     ++ ++G L++
Sbjct: 346 CGLRADI----GFMLQFTDKFMMVVVICSSFLVKIVTTVITSLFMHIPMRDAFAIGALMN 401

Query: 377 AKGHFYIFLAIMGAVHNYI-----THTTAASLVIMIFFTIVHTPFVVQNIIGRARKHAPT 431
            KG   + +   G     +     TH T A LV+ +         VV+ ++  A K  P 
Sbjct: 402 TKGTLSLVVLNAGRDTKALDSPMYTHMTIALLVMSL---------VVEPLLAFAYK--PK 450

Query: 432 KRMA------LQWLDPSNQLQILLCLHGSQNITSTLNFLEISRGTANPGVAVYVTDMIEL 485
           K++A      +Q +    +L++L C+H   N++   N L++S  T    ++V+   ++EL
Sbjct: 451 KKLAHYKHRTVQKIKGETELRVLACVHVLPNVSGITNLLQVSNATKQSPLSVFAIHLVEL 510

Query: 486 TDQIAATLV--QNEGIDTVTVTDKAVMEMREEITTAVQSYVDENGGGITLKRMLALSTFS 543
           T +  A+L+   +E       +D+   E  ++I    ++ ++ N   +T++ + A+S ++
Sbjct: 511 TGRTTASLLIMNDECKPKANFSDRVRAE-SDQIAETFEA-MEVNNDAMTVQTITAVSPYA 568

Query: 544 GMPQDICILAEDLMVSLIILPFHKRQLEDGTLDEGHPGFRYVNRKLLRNATCSVGILVDR 603
            M +DIC+LAED  V  IILP+HK    DG + EG+     +N+ +L +A CSVGILVDR
Sbjct: 569 TMHEDICVLAEDKRVCFIILPYHKHLTPDGRMGEGNSSHAEINQNVLSHAPCSVGILVDR 628

Query: 604 GFGSIENIS-RSQAASLNVAVIFIGGKDDREALAYASRVARHPAVKLTVIRFLLDNSENP 662
           G   + + S R ++    VA++F+GG DDREAL+YA R+     +KLTV+RF+      P
Sbjct: 629 GMAMVRSESFRGESMKREVAMLFVGGPDDREALSYAWRMVGQHVIKLTVVRFV------P 682

Query: 663 QRRAATYKDN-TAELEEEMKIDDECFAEFYERQVAEGHVAYAEKHLANSSETFATLRSLE 721
            R A        AE E E ++DDEC  EF  + + +  V Y EK + +  +T AT+R +E
Sbjct: 683 GREALISSGKVAAEYEREKQVDDECIYEFNFKTMNDSSVKYIEKVVNDGQDTIATIREME 742

Query: 722 --GQYALIIVGRGERANSILTVGMNDWQQCPELGPIGDVLSGSDFLVRTSVLIIKQH 776
               Y L +VGRG  ++S +T G+NDW   PELG IGD L+ S+F +  SVL+I+Q+
Sbjct: 743 DNNSYDLYVVGRGYNSDSPVTAGLNDWSSSPELGTIGDTLASSNFTMHASVLVIQQY 799

Operates as a K(+)/H(+) antiporter or Na(+)/H(+) antiporter of the chloroplast envelope that functions in pH homeostasis and chloroplast development. Monovalent cation transporter with a preference for Cs(+), K(+) and Rb(+) relative to Na(+) or Li(+). Required for pollen tube guidance, but not for normal pollen development. May also be involved in the development or function of the female gametophyte.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FFR9|CHX18_ARATH Cation/H(+) antiporter 18 OS=Arabidopsis thaliana GN=CHX18 PE=2 SV=1

 Score =  297 bits (761), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 228/811 (28%), Positives = 405/811 (49%), Gaps = 53/811 (6%)

Query: 1   MSHNSSKNGTSPAQKCKDFVGVTFADGSGK------IVGLLLAYVLTNLAHHLLKPMHQP 54
           M+ NS+K   +P +   +  GV   D          I+ +++  VLT +  +LL+P+ QP
Sbjct: 1   MATNSTKACPAPMKATSN--GVFQGDNPIDFALPLAILQIVIVIVLTRVLAYLLRPLRQP 58

Query: 55  RITSDIVIGLFLGNIQPIRNG------FELEMIQTLNYIVEFGMICYMFVLGLEMDPYVI 108
           R+ ++++ G+ LG     R+       F  + +  L  +   G++ ++F+ GLE+D   +
Sbjct: 59  RVIAEVIGGIMLGPSLLGRSKAFLDAVFPKKSLTVLETLANLGLLFFLFLAGLEIDTKAL 118

Query: 109 FKPPTRDAIVAYGGMLSTFILGCSLTPFLHYSTHRKIVVAITLSF---TLAGSGSHILTR 165
            +   +   +A  G+   F LG   +  L  +  + +     L F    L+ +   +L R
Sbjct: 119 RRTGKKALGIALAGITLPFALGIGSSFVLKATISKGVNSTAFLVFMGVALSITAFPVLAR 178

Query: 166 VITNLKIGKSDIGKLGMAAGIHSDMITMLIICIGAVFVLPQGNNTQEQIQSAIKMSASLI 225
           ++  LK+  ++IG+L M+A   +D+   +++ +        G+NT   +   + +S    
Sbjct: 179 ILAELKLLTTEIGRLAMSAAAVNDVAAWILLALAIAL---SGSNTSPLVSLWVFLSGCAF 235

Query: 226 FQSVFAAKVSPVFMNWINNENPEGKAMKGTHLVLSLAFMVAVCSCSPFYGYSPILSAFMA 285
              + A+ + P    WI+    EG+ ++ T++  +LA ++     +   G   +  AF+ 
Sbjct: 236 V--IGASFIIPPIFRWISRRCHEGEPIEETYICATLAVVLVCGFITDAIGIHSMFGAFVV 293

Query: 286 GIFFPSEGRMSKWTVGKVNYLLSTLYYPIFFFWMGFHAKLFTFEADTLGTWGRFFFLIVI 345
           G+  P EG  +   V KV  L+S L+ P++F   G    + T +     +WG    +   
Sbjct: 294 GVLIPKEGPFAGALVEKVEDLVSGLFLPLYFVASGLKTNVATIQGAQ--SWGLLVLVTAT 351

Query: 346 STAGKVVGTVICGLMLGFHWP--ESVSLGLLLSAKGHFYIFLAIMGAVHNYITHTTAASL 403
           +  GK++GT+  G+ L F  P  E+++LG L++ KG   + +  +G     +   T A +
Sbjct: 352 ACFGKILGTL--GVSLAFKIPMREAITLGFLMNTKGLVELIVLNIGKDRKVLNDQTFAIM 409

Query: 404 VIM-IFFTIVHTPFV--VQNIIGRARKHAPTKRMALQWLDPSNQLQILLCLHGSQNITST 460
           V+M +F T + TP V  V     RA+K    K  A++  + + QL+IL C HG+ +I S 
Sbjct: 410 VLMALFTTFITTPVVMAVYKPARRAKKEGEYKHRAVERENTNTQLRILTCFHGAGSIPSM 469

Query: 461 LNFLEISRGTAN-PGVAVYVTDMIELTDQIAATL----VQNEGIDTVTVTDKAVMEMREE 515
           +N LE SRG     G+ VY   + EL+++ +A L    V+  G+       + V    ++
Sbjct: 470 INLLEASRGIEKGEGLCVYALHLRELSERSSAILMVHKVRKNGMPFWN--RRGVNADADQ 527

Query: 516 ITTAVQSYVDENGGGITLKRMLALSTFSGMPQDICILAEDLMVSLIILPFHKRQLEDGTL 575
           +  A Q++  +    + ++ M A+S+ S + +DIC  A     +++ILPFHK Q  DG+L
Sbjct: 528 VVVAFQAF--QQLSRVNVRPMTAISSMSDIHEDICTTAVRKKAAIVILPFHKHQQLDGSL 585

Query: 576 DEGHPGFRYVNRKLLRNATCSVGILVDRGFGSIENISRSQAASLNVAVIFIGGKDDREAL 635
           +     +R+VNR++L  A CSVGI VDRG G    +S +Q  S +V V+F GG DDREAL
Sbjct: 586 ETTRGDYRWVNRRVLLQAPCSVGIFVDRGLGGSSQVS-AQDVSYSVVVLFFGGPDDREAL 644

Query: 636 AYASRVARHPAVKLTVIRFLLDNSENPQR------RAATYKDNTAELEEEMKIDDECFAE 689
           AY  R+A HP + LTV RF++    +P+R         +  +N  +  + +K D+E  +E
Sbjct: 645 AYGLRMAEHPGIVLTVFRFVV----SPERVGEIVNVEVSNNNNENQSVKNLKSDEEIMSE 700

Query: 690 FYERQVAEGHVAYAEKHLANSSETFATLRSLEGQYALIIVGRGERANSILTVGMNDWQQC 749
             +    +  V + EK + N++    +      +  L +VGR       L +  N   +C
Sbjct: 701 IRKISSVDESVKFVEKQIENAAVDVRSAIEEVRRSNLFLVGRMPGGEIALAIRENS--EC 758

Query: 750 PELGPIGDVLSGSDFLVRTSVLIIKQHDFKG 780
           PELGP+G +L   +   + SVL+I+Q++  G
Sbjct: 759 PELGPVGSLLISPESSTKASVLVIQQYNGTG 789

May operate as a cation/H(+) antiporter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LUN4|CHX19_ARATH Cation/H(+) antiporter 19 OS=Arabidopsis thaliana GN=CHX19 PE=2 SV=1

 Score =  287 bits (734), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 217/774 (28%), Positives = 385/774 (49%), Gaps = 41/774 (5%)

Query: 31  IVGLLLAYVLTNLAHHLLKPMHQPRITSDIVIGLFLGNIQPIRNGFELEMI------QTL 84
           I+ ++L  V T L  + LKP+ QPR+ ++I+ G+ LG     R+   L+ I        L
Sbjct: 36  ILQIVLVVVFTRLLAYFLKPLKQPRVIAEIIGGILLGPSALGRSKAYLDTIFPKKSLTVL 95

Query: 85  NYIVEFGMICYMFVLGLEMDPYVIFKPPTRDAIVAYGGMLSTFILGCSLTPFLHYSTHRK 144
           + +   G++ ++F++GLE+D   I K   +  ++A  G+   FI+G   T F+  +T  K
Sbjct: 96  DTLANIGLLFFLFLVGLELDFAAIKKTGKKSLLIAIAGISLPFIVGVG-TSFVLSATISK 154

Query: 145 IV----VAITLSFTLAGSGSHILTRVITNLKIGKSDIGKLGMAAGIHSDMITMLIICIGA 200
            V      + +   L+ +   +L R++  LK+  +DIG++ M+A   +D+   +++ +  
Sbjct: 155 GVDQLPFIVFMGVALSITAFPVLARILAELKLLTTDIGRMAMSAAGVNDVAAWILLALAI 214

Query: 201 VFVLPQGNNTQEQIQSAIKMSASLIFQSVFAAKVSPVFMNWINNENPEGKAMKGTHLVLS 260
                 G+ T   +   + +  +     +FA       + ++    PEG+ +K  ++ ++
Sbjct: 215 AL---SGDGTSPLVSVWVLLCGTGFV--IFAVVAIKPLLAYMARRCPEGEPVKELYVCVT 269

Query: 261 LAFMVAVCSCSPFYGYSPILSAFMAGIFFPSEGRMSKWTVGKVNYLLSTLYYPIFFFWMG 320
           L  ++A    +   G   +  AF+ GI  P EG   +    K+  L+S L  P++F   G
Sbjct: 270 LTVVLAASFVTDTIGIHALFGAFVVGIVAPKEGPFCRILTEKIEDLVSGLLLPLYFAASG 329

Query: 321 FHAKLFTFEADTLGTWGRFFFLIVISTAGKVVGTVICGLMLGFHWPESVSLGLLLSAKGH 380
               + T       +WG    +I+ +  GK+VGTV   ++    + E+V+LG L++ KG 
Sbjct: 330 LKTDVTTIRGAQ--SWGLLVLVILTTCFGKIVGTVGSSMLCKVPFREAVTLGFLMNTKGL 387

Query: 381 FYIFLAIMGAVHNYITHTTAASLVIMIFFTIVHTPFVVQNIIGRARKHAPTKRMALQWLD 440
             + +  +G     +     A LV+M  FT   T  +V  I   ARK AP K   +Q  D
Sbjct: 388 VELIVLNIGKDRKVLNDQAFAILVLMALFTTFITTPIVMLIYKPARKGAPYKHRTIQRKD 447

Query: 441 PSNQLQILLCLHGSQNITSTLNFLEISRGTANPG-VAVYVTDMIELTDQIAATLVQNEGI 499
             ++L+IL C H ++NI + +N +E SRGT   G + VY   ++EL+++ +A  + ++  
Sbjct: 448 HDSELRILACFHSTRNIPTLINLIESSRGTGKKGRLCVYAMHLMELSERSSAIAMVHKAR 507

Query: 500 DTVTVTDKAVMEMREEITTAVQSYVDENGGGITLKRMLALSTFSGMPQDICILAEDLMVS 559
           +        +    +++  A ++Y  ++   + ++ M A+S  S + +DIC  A    V+
Sbjct: 508 NNGLPIWNKIERSTDQMVIAFEAY--QHLRAVAVRPMTAISGLSSIHEDICTSAHQKRVA 565

Query: 560 LIILPFHKRQLEDGTLDEGHPGFRYVNRKLLRNATCSVGILVDRGFGSIENISRSQAASL 619
           +I+LPFHK Q  DG ++     F  VN+++L+ A CSVGILVDRG G    +  S+ A  
Sbjct: 566 MILLPFHKHQRMDGAMESIGHRFHEVNQRVLQRAPCSVGILVDRGLGGTSQVVASEVA-Y 624

Query: 620 NVAVIFIGGKDDREALAYASRVARHPAVKLTVIRFLLDNSENPQRRAATYKDNTAELEEE 679
            V + F GG DDREALAY  ++  HP + LTV +F+            T K       +E
Sbjct: 625 KVVIPFFGGLDDREALAYGMKMVEHPGITLTVYKFVAAR--------GTLKRFEKSEHDE 676

Query: 680 MKIDDECFAEFYERQV-----AEGHVAYAEKHLANSSETFATLRSLEGQYALIIVGRGER 734
            +  ++   E + R++         +AY E+ + +  +  ATL+S+  +  L +VGR   
Sbjct: 677 KEKKEKETDEEFVRELMNDPRGNESLAYEERVVESKDDIIATLKSMS-KCNLFVVGRNAA 735

Query: 735 ANSILTVGMNDWQQCPELGPIGDVLSGSDFLVRTSVLIIKQHDFKGELDGLDED 788
             S++         CPELGP+G +LS S+F    SVL+++ +D   +   L E+
Sbjct: 736 VASLV-----KSTDCPELGPVGRLLSSSEFSTTASVLVVQGYDPAADTRPLVEE 784

May operate as a cation/H(+) antiporter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SUQ7|CHX17_ARATH Cation/H(+) antiporter 17 OS=Arabidopsis thaliana GN=CHX17 PE=1 SV=1

 Score =  272 bits (695), Expect = 8e-72,   Method: Compositional matrix adjust.
 Identities = 205/757 (27%), Positives = 369/757 (48%), Gaps = 42/757 (5%)

Query: 49  KPMHQPRITSDIVIGLFLG------NIQPIRNGFELEMIQTLNYIVEFGMICYMFVLGLE 102
           +P+ QPR+ ++IV G+ LG      + + I   F  + +  L+ +   G+I ++F++GLE
Sbjct: 52  RPLRQPRVIAEIVGGILLGPSALGKSTKFINTVFPPKSLTVLDTLANLGLIFFLFLVGLE 111

Query: 103 MDPYVIFKPPTRDAIVAYGGMLSTFILGCSLTPFLHYSTHRKIVVAITLSF---TLAGSG 159
           +DP  + +   R   +A  G+   F+LG   +  L  S       A  L F    L+ + 
Sbjct: 112 LDPKSLKRTGKRALSIALAGITLPFVLGIGTSFALRSSIADGASKAPFLVFMGVALSITA 171

Query: 160 SHILTRVITNLKIGKSDIGKLGMAAGIHSDMITMLIICIGAVFVLPQGNNTQEQIQSAIK 219
             +L R++  +K+  +DIGK+ ++A   +D+   +++ + AV +  +G++    +   + 
Sbjct: 172 FPVLARILAEIKLLTTDIGKIALSAAAVNDVAAWILLAL-AVALSGEGSSPLTSLWVFLS 230

Query: 220 MSASLIFQSVFAAKVSPVFMNWINNENPEGKAMKGTHLVLSLAFMVAVCSCSPFYGYSPI 279
               ++F  +F  +     +  I    PEG+ +   ++  +L  ++A    + F G   +
Sbjct: 231 GCGFVLF-CIFVVQPG---IKLIAKRCPEGEPVNELYVCCTLGIVLAASFVTDFIGIHAL 286

Query: 280 LSAFMAGIFFPSEGRMSKWTVGKVNYLLSTLYYPIFFFWMGFHAKLFTFEADTLGTWGRF 339
             AF+ G+ FP EG  +   V KV  L+S L+ P++F   G    + T +     +WG  
Sbjct: 287 FGAFVIGVIFPKEGNFANALVEKVEDLVSGLFLPLYFVSSGLKTNVATIQGAQ--SWGLL 344

Query: 340 FFLIVISTAGKVVGTVICGLMLGFHWPESVSLGLLLSAKGHFYIFLAIMGAVHNYITHTT 399
             +I  +  GK++GTV+  L       +S++LG L++ KG   + +  +G     +    
Sbjct: 345 VLVIFNACFGKIIGTVLVSLYCKVPLDQSLALGFLMNTKGLVELIVLNIGKDRGVLNDQI 404

Query: 400 AASLVIM-IFFTIVHTPFVVQNI-IGRARKHAPTKRMALQWLDPSNQ-LQILLCLHGSQN 456
            A +V+M IF T + TP V+     G++   A  K   ++  + SN+ L ++ C     N
Sbjct: 405 FAIMVLMAIFTTFMTTPLVLAVYKPGKSLTKADYKNRTVEETNRSNKPLCLMFCFQSIMN 464

Query: 457 ITSTLNFLEISRG-TANPGVAVYVTDMIELTDQIAATL----VQNEGIDTVTVTDKAVME 511
           I + +N +E SRG      ++VY   ++EL+++ +A L    V+  G+      DK+   
Sbjct: 465 IPTIVNLIEASRGINRKENLSVYAMHLMELSERSSAILMAHKVRRNGLPFWN-KDKSENN 523

Query: 512 MREEITTAVQSYVDENGGGITLKRMLALSTFSGMPQDICILAEDLMVSLIILPFHKRQLE 571
                   V          ++++ M A+S  + + +DIC  AE    +++ILPFHK    
Sbjct: 524 SSSSDMVVVAFEAFRRLSRVSVRPMTAISPMATIHEDICQSAERKKTAMVILPFHKHVRL 583

Query: 572 DGTLDEGHPGFRYVNRKLLRNATCSVGILVDRGFGSIENISRSQAASLNVAVIFIGGKDD 631
           D T +     +R++N+K++  + CSV ILVDRG G    ++ S   SL + V+F GG DD
Sbjct: 584 DRTWETTRNDYRWINKKVMEESPCSVAILVDRGLGGTTRVASSD-FSLTITVLFFGGNDD 642

Query: 632 REALAYASRVARHPAVKLTVIRFLLDNSENPQR-RAATYKDNTAELEEEMKIDDECFAEF 690
           REALA+A R+A HP + LTV+RF+  +   P+  R    +D        + ID E   E 
Sbjct: 643 REALAFAVRMAEHPGISLTVVRFIPSDEFKPENVRIEITEDQLCSGATRL-IDIEAITEL 701

Query: 691 YER----------QVAEGHVAYAEKHLANSSETFATLRSLEGQYALIIVGRGERANSILT 740
             +            +E H+ Y EK +    E    ++    +  L +VG+    +  + 
Sbjct: 702 KAKIKEKESSRSNSDSESHIIYEEKIVKCYEEVIEVIKEY-SKSNLFLVGKSPEGS--VA 758

Query: 741 VGMNDWQQCPELGPIGDVLSGSDFL-VRTSVLIIKQH 776
            G+N     PELGPIG++L+ S+ +    SVL+++Q+
Sbjct: 759 SGINVRSDTPELGPIGNLLTESESVSTVASVLVVQQY 795

Operates as a K(+)/H(+) antiporter that controls K(+) acquisition and homeostasis.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SKA9|CHX21_ARATH Cation/H(+) antiporter 21 OS=Arabidopsis thaliana GN=CHX21 PE=2 SV=2

 Score =  263 bits (671), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 208/771 (26%), Positives = 367/771 (47%), Gaps = 55/771 (7%)

Query: 34  LLLAYVLTNLAHHLLKPMHQPRITSDIVIGLF-----LGNIQPI-RNGFELEMIQTLNYI 87
           L +A +   + ++ LKP+  P   + I+ GL      LGN + + +  F  +    L   
Sbjct: 44  LSVANLTYRILYYFLKPLCLPPFVAQILCGLLFSPTVLGNNEVVLKLIFPYKYTMLLETF 103

Query: 88  VEFGMICYMFVLGLEMDPYVIFKPPTRDAIVAYGGMLSTFILGCSLTPFLHYSTHRKIVV 147
               ++  +F+LGL +D  +I     +  I+A  G+L+  + G  L          KI+ 
Sbjct: 104 ANLALVYNVFLLGLGLDLRMIKIKDIKPVIIAIVGLLAALLAGAGLYYLPSNGEADKILA 163

Query: 148 -AITLSFTLAGSGSHILTRVITNLKIGKSDIGKLGMAAGIHSDMITMLIICIGAVFVLPQ 206
             +  S     +    L R++ +LK+ ++D+G   M A + +D+ T ++   G   +  +
Sbjct: 164 GCMYWSIAFGCTNFPDLARILADLKLLRTDMGHTAMCAAVVTDLCTWILFIFGMA-IFSK 222

Query: 207 GNNTQEQIQSAIKMSASLIFQSVFAAKVSPVFMNWINNENPEGKAMKGTHLVLSLAFMVA 266
                E +  ++  + + +    F  +     + WI N   EG  +  TH+  +LA ++ 
Sbjct: 223 SGVRNEMLPYSLASTIAFVLLCYFVIQPG---VAWIFNNTVEGGQVGDTHVWYTLAGVII 279

Query: 267 VCSCSPFYGYSPILSAFMAGIFFPSEGRMSKWTVGKVNYLLSTLYYPIFFFWMGFHAKLF 326
               +   G   I  AF+ G+  P +  + K    K++  LS +  P+F+   G  A + 
Sbjct: 280 CSLITEVCGVHSITGAFLFGLSIPHDHIIRKMIEEKLHDFLSGMLMPLFYIICGLRADIG 339

Query: 327 TFEADTLGTWGRFFFLIVISTAGKVVGTVICGLMLGFHWPESVSLGLLLSAKGHFYIFLA 386
                   + G    +   S   K++ T+ C + L     + +++G L++ KG   + + 
Sbjct: 340 YMNRTV--SVGMMAVVTSASVMVKILSTMFCSIFLRIPLRDGLAIGALMNTKGTMALVIL 397

Query: 387 IMGAVHNYI-----THTTAASLVIMIFFTIVHTPFVVQNIIGRARKHAPTKRM------A 435
             G     +     TH T A LV+           VVQ ++  A K  P K++       
Sbjct: 398 NAGRDTKALDVIMYTHLTLAFLVM---------SMVVQPLLAIAYK--PKKKLIFYKNRT 446

Query: 436 LQWLDPSNQLQILLCLHGSQNITSTLNFLEISRGTANPGVAVYVTDMIELTDQIAATLV- 494
           +Q     ++L +L C+H   N++   N L++S  T    + V+   ++ELT +  A+L+ 
Sbjct: 447 IQKHKGESELCVLTCVHVLPNVSGITNLLQLSNPTKKSPLNVFAIHLVELTGRTTASLLI 506

Query: 495 -QNEGIDTVTVTDKAVMEMRE--EITTAVQSYVDENGGGITLKRMLALSTFSGMPQDICI 551
             +E        D+   E  +  E+ TA++     N  G+ ++ + A+S ++ M +DIC+
Sbjct: 507 MNDEAKPKANFADRVRAESDQIAEMFTALEV----NNDGVMVQTITAVSPYATMDEDICL 562

Query: 552 LAEDLMVSLIILPFHKRQLEDGTLDEGHPGFRYVNRKLLRNATCSVGILVDRGFGSIENI 611
           LAED     I+LP+HK    DG L+EG+     +N+ ++ +A CSVGILVDRG  ++   
Sbjct: 563 LAEDKQACFILLPYHKNMTSDGRLNEGNAVHAEINQNVMSHAPCSVGILVDRGMTTVRFE 622

Query: 612 S---RSQAASLNVAVIFIGGKDDREALAYASRVARHPAVKLTVIRFLLDNSENPQRRAAT 668
           S   + +     +A++F+GG+DDREALAYA R+     V+LTV+RF+      P + A  
Sbjct: 623 SFMFQGETTKKEIAMLFLGGRDDREALAYAWRMVGQEMVQLTVVRFV------PSQEALV 676

Query: 669 YKDNTA-ELEEEMKIDDECFAEFYERQVAEGHVAYAEKHLANSSETFATLRSLE--GQYA 725
                A E E++  +D+E   EF  + + +  V Y EK + N  ET   +  LE    Y 
Sbjct: 677 SAGEAADEYEKDKHVDEESIYEFNFKTMNDPSVTYVEKVVKNGQETITAILELEDNNSYD 736

Query: 726 LIIVGRGERANSILTVGMNDWQQCPELGPIGDVLSGSDFLVRTSVLIIKQH 776
           L IVGRG +  + +T G+ DW   P+LG IGD L  S+F ++ SVL+++Q+
Sbjct: 737 LYIVGRGYQVETPVTSGLTDWNSTPDLGIIGDTLISSNFTMQASVLVVQQY 787

Operates as a Na(+)/H(+) antiporter that plays a role in regulation of xylem Na(+) concentration and, consequently, Na(+) accumulation in the leaf. Required for pollen tube guidance, but not for normal pollen development. May also be involved in the development or function of the female gametophyte.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SA37|CHX1_ARATH Cation/H(+) antiporter 1 OS=Arabidopsis thaliana GN=CHX1 PE=2 SV=1

 Score =  250 bits (638), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 200/778 (25%), Positives = 366/778 (47%), Gaps = 73/778 (9%)

Query: 39  VLTNLAHHLLKPMHQPRITSDIVIGLFLGNIQPIRNGFELEMIQ-TLNYIVEFGMI---C 94
           V +   +  LKP  Q    + I+ G+ L  +  IR   E  + + + +Y + F  +    
Sbjct: 31  VFSQFFYLFLKPCGQAGPVAQILAGIVLSLLTIIRKVHEFFLQKDSASYYIFFSFLLRTA 90

Query: 95  YMFVLGLEMDPYVIFKPPTRDAIVAYGGMLSTFILGCSLTPFLHYSTHRKIVVAITLSF- 153
           ++F++GLE+D   + +      ++  G ++   I G    PFL +      +    L+F 
Sbjct: 91  FVFLIGLEIDLDFMKRNLKNSIVITLGSLV---ISGIIWLPFLWFLIRFMQIKGDFLTFY 147

Query: 154 -----TLAGSGSHILTRVITNLKIGKSDIGKLGMAAGIHSDMITMLIICIGAVFVLPQGN 208
                TL+ + + ++ R I + K+  S+IG+L ++ G+  ++  + I  I   F+   G 
Sbjct: 148 LAFLITLSNTAAPVVIRSIIDWKLHTSEIGRLAISCGLFIEITNIFIYTIVLSFI--SGT 205

Query: 209 NTQEQIQSAIKMSASLIFQSVFAAKV----SPVFMNWINNENPEGKAMKGTHLVLSLAFM 264
            T +            IF   FA  V    +    +W+   NP+ K +     +  +  +
Sbjct: 206 MTAD------------IFIYSFATGVIILTNRFLASWLPKRNPKEKYLSKAETLAFIILI 253

Query: 265 VAVCSCSPFYGYSPILSAFMAGIFFPSEGRMSKWTVGKVNYLLSTLYYPIFFFWMGFHAK 324
           + +         +  L  F+ G+ FP EG+  +  + +++Y +     P++F ++GF   
Sbjct: 254 LIIALTIESSNLNSTLFVFIIGLMFPREGKTYRTLIQRLSYPIHEFVLPVYFGYIGFR-- 311

Query: 325 LFTFEADTLGTWGRFFFLIVISTAGKVVGTVICGLMLGFHWPESVSLGLLLSAKGHFYIF 384
            F+  + T   +      + +S  GK++G +     L       + L  +LS KGH  + 
Sbjct: 312 -FSVNSLTKRHYLVLGMTVALSLLGKLLGVLFACSFLKIPKQYWLFLSTMLSVKGHIGLV 370

Query: 385 LAIMGAVHNY----ITHTT-AASLVIMIFFTIVHTPFVVQNIIGRARKHAPTKRMALQWL 439
           L     ++      + H    A+LVIM   + V T  ++++      K     + +L+  
Sbjct: 371 LLDSNLMYKKWFTPVVHDMFVAALVIMTLLSGVITSLLLRS----QEKSFAHIKTSLELF 426

Query: 440 DPSNQLQILLCLHGSQNITSTLNFLE----ISRGTANPGVAVYVTDMIELTDQIAATLVQ 495
           D + +L++L C++G ++   +++ +      S GT++     Y+  +I L  +    L+ 
Sbjct: 427 DTTEELRVLTCVYGVRHARGSISLVSALSGFSPGTSSSPFTPYLMHLIPLPKKRKTELLY 486

Query: 496 NE---------GIDTVTVTDKAVMEMREEITTAVQSYVDENGGGITLKRMLALSTFSGMP 546
           +E         G D    T++ +     EI  ++ S+  +    I ++++  ++    M 
Sbjct: 487 HELDEDAGNSNGGDDEFGTNEGL-----EINDSIDSFTRDRK--IMVRQVKLVAPMENMH 539

Query: 547 QDICILAEDLMVSLIILPFHKRQLEDGTLDEGHPGFRYVNRKLLRNATCSVGILVDRGFG 606
           ++IC   EDL VS++ LPFHK Q  DG        FR++NRK+L+ A CS+GI VDR   
Sbjct: 540 EEICNATEDLRVSIVFLPFHKHQRIDGKTTNDGEVFRHMNRKVLKQAQCSIGIFVDRNIT 599

Query: 607 SIENISRSQAASLNVAVIFIGGKDDREALAYASRVARHPAVKLTVIRFLLDNSENPQ--R 664
               +  S +   +VA +F GG DDREAL+    +  +  + LTVI+F+ D+S+  +   
Sbjct: 600 GFHQLHGSDSVQ-HVAALFFGGPDDREALSLCKWLTNNSQIHLTVIQFVADDSKTEKIVG 658

Query: 665 RAATYKDNTAELE------EEMKIDDECFAEFYERQVAEGHVAYAEKHLANSSETFATLR 718
            A T ++N   LE       E + D     EFY R V  G V + EK ++N  +T   LR
Sbjct: 659 DAVTKENNEVFLEIVSEDQTENETDRIFLEEFYHRFVTTGQVGFIEKRVSNGMQTLTILR 718

Query: 719 SLEGQYALIIVGRGERANSILTVGMNDWQQCPELGPIGDVLSGSDFLVRTSVLIIKQH 776
            +   Y+L +VG+  R +  +T GMNDW++CPELG +GD L+ S+  V  SVL++++H
Sbjct: 719 EIGEMYSLFVVGKN-RGDCPMTSGMNDWEECPELGTVGDFLASSNMDVNASVLVVQRH 775

May operate as a cation/H(+) antiporter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q1HDT3|CHX16_ARATH Cation/H(+) antiporter 16 OS=Arabidopsis thaliana GN=CHX16 PE=2 SV=1

 Score =  246 bits (628), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 216/820 (26%), Positives = 388/820 (47%), Gaps = 78/820 (9%)

Query: 8   NGTSPAQKCKDFVGVTFADGSGK--------------IVGLLLAYVLTNLAHHLLKPMHQ 53
           NGT PA KC   V +     +G               I+ + L   +T     LL+PM Q
Sbjct: 6   NGTIPAMKCPKNVAMMKTTSNGVFDGESPLDFAFPLVILQICLVVAVTRSLAFLLRPMRQ 65

Query: 54  PRITSDIVIGLFLG-----NIQPIRNG-FELEMIQTLNYIVEFGMICYMFVLGLEMDPYV 107
           PR+ ++I+ G+ LG      I   +N  F    +  L+ +   G++ ++F++GLE+D   
Sbjct: 66  PRVVAEIIGGILLGPSALGRITSYKNSIFPARSLTVLDTLANLGLLLFLFLVGLEIDLTS 125

Query: 108 IFKPPTRDAIVAYGGMLSTFILGCSLTPFLHYSTHRK----------IVVAITLSFTLAG 157
           + +   +   +A  GML  F +G  +T F                  I + + LS T  G
Sbjct: 126 LRRTGKKAISIAAAGMLLPFGMGI-VTSFAFPEASSSGDNSKVLPFIIFMGVALSITAFG 184

Query: 158 SGSHILTRVITNLKIGKSDIGKLGMAAGIHSDMITMLIICIGAVFVLPQGNNTQEQIQSA 217
               +L R++  LK+  +D+G++ M A   +D+   +++   A+ V   G+     +   
Sbjct: 185 ----VLARILAELKLLTTDLGRISMNAAAINDVAAWVLL---ALAVSLSGDRNSPLVPLW 237

Query: 218 IKMSASLIFQSVFAAKVSPVFMNWINNENPEGKAMKGTHLVLSLAFMVAVCSCSPFYGYS 277
           + +S      + F   + P    +I+   PEG+ +   ++ ++L  ++     +   G  
Sbjct: 238 VLLSGIAFVIACFL--IVPRIFKFISRRCPEGEPIGEMYVCVALCAVLLAGFATDAIGIH 295

Query: 278 PILSAFMAGIFFPSEGRMSKWTVGKVNYLLSTLYYPIFFFWMGFHAKLFTFEADTLGTWG 337
            I  AF+ G+ FP +G  S   V K+  L+  L  P++F   G    + T +   + +WG
Sbjct: 296 AIFGAFVMGVLFP-KGHFSDAIVEKIEDLVMGLLLPLYFVMSGLKTDITTIQG--VKSWG 352

Query: 338 RFFFLIVISTAGKVVGTVICGLMLGFHWPESVSLGLLLSAKGHFYIFLAIMGAVHNYITH 397
           R   +IV +  GK+VGTV   L+      ESV LG+L++ KG   + +  +G     ++ 
Sbjct: 353 RLALVIVTACFGKIVGTVSVALLCKVRLRESVVLGVLMNTKGLVELIVLNIGKDRKVLSD 412

Query: 398 TTAASLVIM-IFFTIVHTPFVV------------QNIIGRARKHAPTKRMALQWLDPSNQ 444
            T A +V+M IF T + TP V+             ++  + RKH   K    +  +   Q
Sbjct: 413 QTFAIMVLMAIFTTFITTPIVLALYKPSETTQTHSSVSYKNRKHR-RKIENDEEGEKMQQ 471

Query: 445 LQILLCLHGSQNITSTLNFLEISRGT--ANPGVAVYVTDMIELTDQIAA-TLVQNEGIDT 501
           L++L+CL  S++I   +  +E +RG+        VYV  + +L+++ ++  +VQ    + 
Sbjct: 472 LKVLVCLQSSKDIDPMMKIMEATRGSNETKERFCVYVMHLTQLSERPSSIRMVQKVRSNG 531

Query: 502 VTVTDKAVMEMREEITTAVQSYVDENGGGITLKRMLALSTFSGMPQDICILAEDLMVSLI 561
           +   +K   E    +T A ++        ++++ + A+S  S + +DIC  A+    + +
Sbjct: 532 LPFWNKK-RENSSAVTVAFEA--SSKLSSVSVRSVTAISPLSTIHEDICSSADSKCTAFV 588

Query: 562 ILPFHK--RQLEDGTLDEGHPGFRYVNRKLLRNATCSVGILVDRGFGSIENISRSQAASL 619
           ILPFHK  R LE    +     ++ +N+++L N+ CSVGILVDRG G   +   S   SL
Sbjct: 589 ILPFHKQWRSLEK-EFETVRSEYQGINKRVLENSPCSVGILVDRGLGDNNSPVASSNFSL 647

Query: 620 NVAVIFIGGKDDREALAYASRVARHPAVKLTVIRFLLDNSENPQRRAATYKDNTAELEEE 679
           +V V+F GG DDREAL Y  R+A HP V LTV+         P+  +A +    A+    
Sbjct: 648 SVNVLFFGGCDDREALVYGLRMAEHPGVNLTVVVI-----SGPE--SARFDRLEAQETSL 700

Query: 680 MKIDDECFAEFYERQVAEGHVAYAEKHLANSSETFATLRSLEGQYALIIVGRGERANSIL 739
             +D++  A   +R     + A  E+   NS+E    +     +  +++VG+  +   + 
Sbjct: 701 CSLDEQFLAAIKKR----ANAARFEERTVNSTEEVVEIIRQFYECDILLVGKSSKGPMVS 756

Query: 740 TVGMNDWQQCPELGPIGDVLSGSDFLVRTSVLIIKQHDFK 779
            + +    +CPELGP+G+++  ++     SVL+++Q+  K
Sbjct: 757 RLPVMKI-ECPELGPVGNLIVSNEISTSVSVLVVQQYTGK 795

May operate as a cation/H(+) antiporter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M353|CHX20_ARATH Cation/H(+) antiporter 20 OS=Arabidopsis thaliana GN=CHX20 PE=2 SV=1

 Score =  241 bits (616), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 217/807 (26%), Positives = 369/807 (45%), Gaps = 112/807 (13%)

Query: 47  LLKPMHQPRITSDIVIGLFLGNIQPIRNGFELEMI------QTLNYIVEFGMICYMFVLG 100
           L KP+ QP++ ++IV G+ LG     RN   ++ I        L  +   G++ ++F++G
Sbjct: 46  LFKPLRQPKVIAEIVGGILLGPSALGRNMAYMDRIFPKWSMPILESVASIGLLFFLFLVG 105

Query: 101 LEMDPYVIFKPPTRDAIVAYGGMLSTFILGCSLTPFLH---YSTHRKIVVAITLSF---T 154
           LE+D   I +   R   +A  G+   FI G  +   +    Y+   K   A  L F    
Sbjct: 106 LELDLSSIRRSGKRAFGIAVAGITLPFIAGVGVAFVIRNTLYTAADKPGYAEFLVFMGVA 165

Query: 155 LAGSGSHILTRVITNLKIGKSDIGKLGMAAGI---------------------------H 187
           L+ +   +L R++  LK+  + IG+  MAA                              
Sbjct: 166 LSITAFPVLARILAELKLLTTQIGETAMAAAAFNDVAAWILLALAVALAGNGGEGGGEKK 225

Query: 188 SDMITMLIICIGAVFVLPQGNNTQEQIQSAIKMSASLIFQSVFAAKVSPVFMNWINNE-N 246
           S ++++ ++  GA FV                         VF   V    M W+    +
Sbjct: 226 SPLVSLWVLLSGAGFV-------------------------VFMLVVIRPGMKWVAKRGS 260

Query: 247 PEGKAMKGTHLVLSLAFMVAVCSCSPFYGYSPILSAFMAGIFFPSEGRMSKWTVGKVNYL 306
           PE   ++ +++ L+LA ++     +   G   I  AF+ G+  P +G   +  + ++   
Sbjct: 261 PENDVVRESYVCLTLAGVMVSGFATDLIGIHSIFGAFVFGLTIPKDGEFGQRLIERIEDF 320

Query: 307 LSTLYYPIFFFWMGFHAKLFTFEADTLGTWGRFFFLIVISTAGKVVGTVICGLMLGFHWP 366
           +S L  P++F   G    +         +WG    ++V + AGK+VGT +  +M+     
Sbjct: 321 VSGLLLPLYFATSGLKTDVAKIRGAE--SWGMLGLVVVTACAGKIVGTFVVAVMVKVPAR 378

Query: 367 ESVSLGLLLSAKGHFYIFLAIMGAVHNYITHTTAASLVIMIFFTIVHTPFVVQNIIGRAR 426
           E+++LG L++ KG   + +  +G     +   T A LV+M  FT   T   V  I   AR
Sbjct: 379 EALTLGFLMNTKGLVELIVLNIGKEKKVLNDETFAILVLMALFTTFITTPTVMAIYKPAR 438

Query: 427 -KHAPTKRMALQWLDPSNQLQILLCLHGSQNITSTLNFLEISRGTANPGVAVYVTDMIEL 485
             H   K ++        +L+IL CLHG  N++S ++ +E  R T    + ++V  ++EL
Sbjct: 439 GTHRKLKDLSASQDSTKEELRILACLHGPANVSSLISLVESIRTTKILRLKLFVMHLMEL 498

Query: 486 TDQIAAT-LVQNEGIDTVTVTDKAVM-EMREEITTAVQSYVDENGGGITLKRMLALSTFS 543
           T++ ++  +VQ    + +    +    E    +    ++Y     G + ++ + A+S   
Sbjct: 499 TERSSSIIMVQRARKNGLPFVHRYRHGERHSNVIGGFEAY--RQLGRVAVRPITAVSPLP 556

Query: 544 GMPQDICILAEDLMVSLIILPFHKR---------QLEDGTLDEGHP-----GFRYVNRKL 589
            M +DIC +A+   V++IILPFHKR           +DG  D   P     G+R VN+++
Sbjct: 557 TMHEDICHMADTKRVTMIILPFHKRWNADHGHSHHHQDGGGDGNVPENVGHGWRLVNQRV 616

Query: 590 LRNATCSVGILVDRGFGSIENISRSQAASLN-------VAVIFIGGKDDREALAYASRVA 642
           L+NA CSV +LVDRG GSIE    +Q  SL+       V VIF GG DDRE++    R+A
Sbjct: 617 LKNAPCSVAVLVDRGLGSIE----AQTLSLDGSNVVERVCVIFFGGPDDRESIELGGRMA 672

Query: 643 RHPAVKLTVIRFLLDNS------------ENPQRRAATYKDNTAELEEEMKIDDECFAEF 690
            HPAVK+TVIRFL+  +               + +   +     + E+E ++D+    +F
Sbjct: 673 EHPAVKVTVIRFLVRETLRSTAVTLRPAPSKGKEKNYAFLTTNVDPEKEKELDEGALEDF 732

Query: 691 YERQVAEGHVAYAEKHLANSSETFATLRSLEGQYALIIVGRGERANSILTVGMNDWQQCP 750
             +   +  V Y EK   N  E   ++      + LI+VGRG   ++ +        + P
Sbjct: 733 KSKW--KEMVEYKEKEPNNIIEEILSI-GQSKDFDLIVVGRGRIPSAEVAALAERQAEHP 789

Query: 751 ELGPIGDVLSGSDFLVRTSVLIIKQHD 777
           ELGPIGDVL+ S   +  S+L+++QH+
Sbjct: 790 ELGPIGDVLASSINHIIPSILVVQQHN 816

Operates as a K(+)/H(+) antiporter that maintains K(+) homeostasis in guard cells and could regulate pH. Plays a critical role in osmoregulation through the control of stomates opening.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	792
255553544	797	monovalent cation:proton antiporter, put	0.997	0.991	0.682	0.0
224106101	791	cation proton exchanger [Populus trichoc	0.984	0.986	0.653	0.0
449436683	790	PREDICTED: cation/H(+) antiporter 28-lik	0.964	0.967	0.645	0.0
449489161	790	PREDICTED: cation/H(+) antiporter 28-lik	0.964	0.967	0.644	0.0
356544289	787	PREDICTED: cation/H(+) antiporter 28-lik	0.977	0.983	0.557	0.0
147816212	795	hypothetical protein VITISV_024100 [Viti	0.979	0.976	0.567	0.0
297816480	801	hypothetical protein ARALYDRAFT_485568 [	0.988	0.977	0.546	0.0
356537296	793	PREDICTED: cation/H(+) antiporter 28-lik	0.974	0.973	0.548	0.0
79441748	801	cation/H(+) antiporter 28 [Arabidopsis t	0.988	0.977	0.543	0.0
22655170	801	putative protein [Arabidopsis thaliana]	0.988	0.977	0.543	0.0

>gi|255553544|ref|XP_002517813.1| monovalent cation:proton antiporter, putative [Ricinus communis] gi|223543085|gb|EEF44620.1| monovalent cation:proton antiporter, putative [Ricinus communis]

 Score = 1137 bits (2942), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 543/796 (68%), Positives = 654/796 (82%), Gaps = 6/796 (0%)

Query: 2   SHNSSKNGTSPAQK--CKDFVGVTFADGSGKIVGLLLAYVLTNLAHHLLKPMHQPRITSD 59
           +  ++ N  SPAQ+  C++F+  T  +G GKIVGL+L ++L++L HHLL+P+ QPRI SD
Sbjct: 3   AQKANMNPKSPAQESTCQNFITYTVRNGPGKIVGLILTFILSHLLHHLLRPLSQPRIASD 62

Query: 60  IVIGLFLGNIQPIRNGFELEMIQTLNYIVEFGMICYMFVLGLEMDPYVIFKPPTRDAIVA 119
           IVIGL +GNI  +R+ F+ + I TLN++ EFGMICYMFVLG+EMDPYVIFKPPT+ AI+A
Sbjct: 63  IVIGLLIGNIPWVRDSFDEKFITTLNFVAEFGMICYMFVLGMEMDPYVIFKPPTQPAIIA 122

Query: 120 YGGMLSTFILGCSLTPFLHYSTHRKIVVAITLSFTLAGSGSHILTRVITNLKIGKSDIGK 179
           Y GM+STFIL CS+TPFL YS    I   ++LS TL+GSGSHILTR+ITNLKIGKSDIGK
Sbjct: 123 YAGMVSTFILACSITPFLQYSKQADIGFTLSLSITLSGSGSHILTRIITNLKIGKSDIGK 182

Query: 180 LGMAAGIHSDMITMLIICIGAVFVLPQGN--NTQEQIQSAIKMSASLIFQSVFAAKVSPV 237
           L +AAG+HSDMI+ML+ICIG VF+ P     +   Q   A+ MS++L+ Q++FAAKVSPV
Sbjct: 183 LVIAAGVHSDMISMLLICIGYVFIPPSSRVADISAQFTKALTMSSALLLQTIFAAKVSPV 242

Query: 238 FMNWINNENPEGKAMKGTHLVLSLAFMVAVCSCSPFYGYSPILSAFMAGIFFPSEGRMSK 297
           F+NW+NNENPEGK MKG+HLVLS+AFMV VC+ SP YGYSPILSAFMAGIF PSEGR+SK
Sbjct: 243 FLNWVNNENPEGKPMKGSHLVLSIAFMVMVCTASPIYGYSPILSAFMAGIFLPSEGRVSK 302

Query: 298 WTVGKVNYLLSTLYYPIFFFWMGFHAKLFTFEADTLGTWGRFFFLIVISTAGKVVGTVIC 357
           W VGK+NYLL+T+++P+FFFWMG+HA L  FE   L TWGRF  L VI+  GK+VGTVIC
Sbjct: 303 WAVGKINYLLTTIFFPLFFFWMGYHANLHKFEPGQLATWGRFAVLTVIALFGKMVGTVIC 362

Query: 358 GLMLGFHWPESVSLGLLLSAKGHFYIFLAIMGAVHNYITHTTAASLVIMIFFTIVHTPFV 417
           G MLG+HW ES  LGLLL+AKGHF++FLAI+ +     + + +  +VI+IFFT+VHTP +
Sbjct: 363 GAMLGYHWRESAELGLLLTAKGHFHVFLAILLSTFGVTSTSVSCMMVIVIFFTVVHTPSI 422

Query: 418 VQNIIGRARKHAPTKRMALQWLDPSNQLQILLCLHGSQNITSTLNFLEISRGTANPGVAV 477
           V  II RARK APT R ALQWLDPS +L+ILLC+HG  N+ ST+NF+EISRGT++PG+ V
Sbjct: 423 VMEIIQRARKRAPTHRRALQWLDPSTELRILLCIHGQHNVPSTINFMEISRGTSDPGILV 482

Query: 478 YVTDMIELTDQIAATLVQNEGIDTVTVTDKAVMEMREEITTAVQSYVDENGGGITLKRML 537
           Y TDM+ELT+QIAATLVQ+ G+DTVTVTDK V +MR++IT ++Q+YVDENG GITL+RML
Sbjct: 483 YATDMVELTEQIAATLVQSNGVDTVTVTDKQVTDMRDQITQSIQAYVDENGDGITLRRML 542

Query: 538 ALSTFSGMPQDICILAEDLMVSLIILPFHKRQLEDGTLDEGHPGFRYVNRKLLRNATCSV 597
           ALSTF+ M QDICILAEDLM+SLIILPFHK Q  DGTLD GHPGFRYVNRK+LRNA CSV
Sbjct: 543 ALSTFNSMAQDICILAEDLMISLIILPFHKSQRSDGTLDGGHPGFRYVNRKILRNAPCSV 602

Query: 598 GILVDRGFGSIENISRSQAASLNVAVIFIGGKDDREALAYASRVARHPAVKLTVIRFLL- 656
           GILVDRG G  E IS +   S +VAVIFIGGKDDREALAYA RVARHP VKLTVIRFLL 
Sbjct: 603 GILVDRGLGLAEKIS-TMPRSFHVAVIFIGGKDDREALAYAGRVARHPGVKLTVIRFLLD 661

Query: 657 DNSENPQRRAATYKDNTAELEEEMKIDDECFAEFYERQVAEGHVAYAEKHLANSSETFAT 716
           DNS+   RRA  ++ N AE E EMK+DDECFA FYER VA GHV+Y EKHLANS+ET+AT
Sbjct: 662 DNSDQISRRAGGFRINQAEQEAEMKLDDECFAHFYERYVAGGHVSYMEKHLANSAETYAT 721

Query: 717 LRSLEGQYALIIVGRGERANSILTVGMNDWQQCPELGPIGDVLSGSDFLVRTSVLIIKQH 776
           L+SLEGQYALIIVGRG R NSILTVGMNDWQQCPELGPIGDVLSGS F  +TSVLI++QH
Sbjct: 722 LKSLEGQYALIIVGRGGRVNSILTVGMNDWQQCPELGPIGDVLSGSSFSQKTSVLIVQQH 781

Query: 777 DFKGELDGLDEDFSVM 792
             +GEL G+D+DFS+M
Sbjct: 782 HLRGELKGVDDDFSIM 797

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224106101|ref|XP_002314043.1| cation proton exchanger [Populus trichocarpa] gi|222850451|gb|EEE87998.1| cation proton exchanger [Populus trichocarpa]

 Score = 1057 bits (2734), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 516/789 (65%), Positives = 637/789 (80%), Gaps = 9/789 (1%)

Query: 8   NGTSPAQKCKDFVGVTFADGSGKIVGLLLAYVLTNLAHHLLKPMHQPRITSDIVIGLFLG 67
           NG++PA  C DF+  T  + +GK++ + LA+V +NL+H LLKP+ QPRI SDI +GL LG
Sbjct: 8   NGSAPA--CPDFISYTVKNAAGKVISIGLAFVFSNLSHQLLKPLSQPRIASDIAVGLVLG 65

Query: 68  NIQPIRNGFELEMIQTLNYIVEFGMICYMFVLGLEMDPYVIFKPPTRDAIVAYGGMLSTF 127
           NI  IR+ F+ + I  LN I EFGMICYMFVLG+EMDPYVIFK P+R+A+VAY GM+ T 
Sbjct: 66  NISLIRHAFDEQFIDILNSIAEFGMICYMFVLGMEMDPYVIFKAPSRNAMVAYAGMVPTI 125

Query: 128 ILGCSLTPFLHYSTHRKIVVAITLSFTLAGSGSHILTRVITNLKIGKSDIGKLGMAAGIH 187
           IL CS+TP LHY  H  I   ++LS TL+GS SHILTR+IT+LKIGKSDIGKL +AAG+H
Sbjct: 126 ILVCSITPLLHYYQHPTIGFTLSLSTTLSGSSSHILTRLITSLKIGKSDIGKLVIAAGMH 185

Query: 188 SDMITMLIICIGAVFVLPQG---NNTQEQIQSAIKMSASLIFQSVFAAKVSPVFMNWINN 244
           SDMI++L++ IG   + P     N+    I+  + M+A+L+ Q +F A VSP+FMNW+NN
Sbjct: 186 SDMISVLLVSIG-YLLFPTAITVNDIAANIRMTLTMAAALLLQIIFTATVSPIFMNWVNN 244

Query: 245 ENPEGKAMKGTHLVLSLAFMVAVCSCSPFYGYSPILSAFMAGIFFPSEGRMSKWTVGKVN 304
           ENPEGK MKG+HLVLS+A+M  VCS +P YGYSPILSAF+AG+F PSEGR+SKW VGK+N
Sbjct: 245 ENPEGKPMKGSHLVLSIAYMAFVCSGAPIYGYSPILSAFVAGVFLPSEGRVSKWAVGKIN 304

Query: 305 YLLSTLYYPIFFFWMGFHAKLFTFEADTLGTWGRFFFLIVISTAGKVVGTVICGLMLGFH 364
           YLL T++YP+FFFWMGFHA    FEA   GTWGRF  L+ I+  GKV+GTVICG MLGFH
Sbjct: 305 YLLPTIFYPVFFFWMGFHADFSKFEASHWGTWGRFLVLVFITIFGKVIGTVICGAMLGFH 364

Query: 365 WPESVSLGLLLSAKGHFYIFLAIMGAVHNYITHTTAASLVIMIFFTIVHTPFVVQNIIGR 424
             ES  LGLLL+AKGHF++FLA++G + N  T TT+ S++I+IF +++ TP VV  II R
Sbjct: 365 QRESAELGLLLTAKGHFHVFLAVIGILLNITTTTTSISIIIVIFLSVLPTPLVVSQIIKR 424

Query: 425 ARKHAPTKRMALQWLDPSNQLQILLCLHGSQNITSTLNFLEISRGTANPGVAVYVTDMIE 484
           ARK APT+R+AL+WLDPSN+L+ILLC+ G  N+ ST+NF+EIS+G ++PG+ VY+TDM+E
Sbjct: 425 ARKRAPTQRVALEWLDPSNELRILLCIQGVHNVLSTINFMEISQGASDPGILVYLTDMVE 484

Query: 485 LTDQIAATLVQNEGIDTVTVTDKAVMEMREEITTAVQSYVDENGGGITLKRMLALSTFSG 544
           LTD IA+TLVQ EG+DTVTV DK V EMR++I+TAVQ+YV+ENG GITL+RMLALSTF G
Sbjct: 485 LTDHIASTLVQ-EGMDTVTVMDKDVTEMRDQISTAVQAYVEENGNGITLRRMLALSTFDG 543

Query: 545 MPQDICILAEDLMVSLIILPFHKRQLEDGTLDEGHPGFRYVNRKLLRNATCSVGILVDRG 604
           M +DIC LAEDLM+SLIILPFHK +  +GTLD G+PGFRYVNRK+LRNA CSVGILVDRG
Sbjct: 544 MAKDICNLAEDLMISLIILPFHKNRHANGTLDGGNPGFRYVNRKVLRNAPCSVGILVDRG 603

Query: 605 FGSIENISRSQAASLNVAVIFIGGKDDREALAYASRVARHPAVKLTVIRFLLD-NSENPQ 663
           +G +E IS+S  +S  VAVIF GGKDDREALAYA RVARHP VKLTVIRFLLD +S    
Sbjct: 604 YGLVEKISKS-VSSFQVAVIFFGGKDDREALAYAGRVARHPGVKLTVIRFLLDSDSVTTS 662

Query: 664 RRAATYKDNTAELEEEMKIDDECFAEFYERQVAEGHVAYAEKHLANSSETFATLRSLEGQ 723
           RRA  Y+ N A+ EEEMK+DDE FA+FYER +A GHV+Y+EKH+ANS+ET+ TLRSLEGQ
Sbjct: 663 RRAGNYRINAAKQEEEMKLDDESFAQFYERHIAGGHVSYSEKHVANSAETYTTLRSLEGQ 722

Query: 724 YALIIVGRGERANSILTVGMNDWQQCPELGPIGDVLSGSDFLVRTSVLIIKQHDFKGELD 783
           Y LIIVGRG R +SILT+GMNDWQQCPELGPIGDVLSGSD    TSVLII+QH  KGELD
Sbjct: 723 YGLIIVGRGGRVDSILTIGMNDWQQCPELGPIGDVLSGSDSSHTTSVLIIQQHSLKGELD 782

Query: 784 GLDEDFSVM 792
           G+D++FS+M
Sbjct: 783 GVDDEFSIM 791

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449436683|ref|XP_004136122.1| PREDICTED: cation/H(+) antiporter 28-like [Cucumis sativus]

 Score = 1032 bits (2669), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 497/770 (64%), Positives = 604/770 (78%), Gaps = 6/770 (0%)

Query: 24  FADGSGKIVGLLLAYVLTNLAHHLLKPMHQPRITSDIVIGLFLGNIQPIRNGFELEMIQT 83
           F   +  I+G  +   L N  H+LL+P  QPRITSD ++GL +GN   IR   ++  I+T
Sbjct: 26  FGKATRSILGFFIMMGLCNGVHYLLRPFSQPRITSDTIVGLVVGNF--IRKQLDISTIKT 83

Query: 84  LNYIVEFGMICYMFVLGLEMDPYVIFKPPTRDAIVAYGGMLSTFILGCSLTPFLHYSTHR 143
           L YIV+FGM+CYMFVLGLE+DPYVIFK PTRDA VAY GM+ST IL CS+ PF+     +
Sbjct: 84  LRYIVDFGMVCYMFVLGLEVDPYVIFKAPTRDAKVAYAGMISTLILACSIIPFIGMIKSK 143

Query: 144 KIVVAITLSFTLAGSGSHILTRVITNLKIGKSDIGKLGMAAGIHSDMITMLIICIGAVFV 203
           +I   ++LS  L+ + S +LTR+IT+LKIGKSDIG+L +AAG+HSD I+ L+IC+G +F 
Sbjct: 144 EISFILSLSTVLSSTASPVLTRLITSLKIGKSDIGRLVIAAGMHSDFISTLMICVGYLFC 203

Query: 204 LPQGNNTQEQIQSAIKMSASLIFQSVFAAKVSPVFMNWINNENPEGKAMKGTHLVLSLAF 263
             Q   T+       ++   L+ Q+V  AKVSPVFMNW+NNENPEGK MKG HLVL++AF
Sbjct: 204 KCQ--ETRISFIKGFQLGILLLIQAVLTAKVSPVFMNWVNNENPEGKPMKGPHLVLAVAF 261

Query: 264 MVAVCSCSPFYGYSPILSAFMAGIFFPSEGRMSKWTVGKVNYLLSTLYYPIFFFWMGFHA 323
           M  +C C   +GY+PILSAF+AG F P EGR+S+W +GK+NYLL+T++YPIFFFWMG  +
Sbjct: 262 MAFLCCCPTVFGYNPILSAFLAGTFLPREGRVSRWAIGKINYLLTTVFYPIFFFWMGVES 321

Query: 324 KLFTFEADTLGTWGRFFFLIVISTAGKVVGTVICGLMLGFHWPESVSLGLLLSAKGHFYI 383
           KL  FE   + TW R   L  I+T GKVVGTVI G +LGFHWPESV+LGLLL+ KGHF+I
Sbjct: 322 KLTDFEPGQIMTWVRLILLFAIATLGKVVGTVIAGAILGFHWPESVALGLLLTMKGHFHI 381

Query: 384 FLAIMGAVHNYITHTTAASLVIMIFFTIVHTPFVVQNIIGRARKHAPTKRMALQWLDPSN 443
           +LAI       IT +T+  +VI+IFFTIVH P VV +II RARK  PT RMALQ LDPS+
Sbjct: 382 YLAIAAKTAGKITTSTSIVMVIVIFFTIVHAPKVVAHIIQRARKRTPTHRMALQLLDPSS 441

Query: 444 QLQILLCLHGSQNITSTLNFLEISRGTANPGVAVYVTDMIELTDQIAATLVQNEGIDTVT 503
           +L+ILLC+HG QN  + +N +EISRGTANPGV VYVTDMIELTD+IA+TLVQ EG+D+VT
Sbjct: 442 ELKILLCIHGPQNTPAAINIMEISRGTANPGVVVYVTDMIELTDEIASTLVQGEGVDSVT 501

Query: 504 VTDKAVMEMREEITTAVQSYVDENGGGITLKRMLALSTFSGMPQDICILAEDLMVSLIIL 563
           VT   V +MRE++T+AVQSYVDENG GITL+RMLALSTF+ M QDICILAE+LM +LIIL
Sbjct: 502 VTHTGVTQMREQVTSAVQSYVDENGEGITLRRMLALSTFNSMAQDICILAEELMGALIIL 561

Query: 564 PFHKRQLEDGTLDEGHPGFRYVNRKLLRNATCSVGILVDRGFGSIENISRSQAASLNVAV 623
           PFHK Q  DG+L EG   FRYVNRK+LR+A CSVGILVDRG GS+E ISRS   S NVAV
Sbjct: 562 PFHKSQRGDGSLSEGQTAFRYVNRKVLRHAPCSVGILVDRGLGSVEKISRSY-VSQNVAV 620

Query: 624 IFIGGKDDREALAYASRVARHPAVKLTVIRFLLD-NSENPQRRAATYKDNTAELEEEMKI 682
           IFIGGKDDREALAYA RVARHP VKL+VIRFL+D ++ N  RRA TY+ + AE EEEM+ 
Sbjct: 621 IFIGGKDDREALAYAGRVARHPGVKLSVIRFLVDADAVNAARRAGTYRISVAEQEEEMRQ 680

Query: 683 DDECFAEFYERQVAEGHVAYAEKHLANSSETFATLRSLEGQYALIIVGRGERANSILTVG 742
           DDECFA FYER VA GHVAY EKHLA+SSET++TL+SLEGQYALIIVGRG + N++LT G
Sbjct: 681 DDECFAYFYERHVAGGHVAYVEKHLASSSETYSTLKSLEGQYALIIVGRGGKVNTVLTFG 740

Query: 743 MNDWQQCPELGPIGDVLSGSDFLVRTSVLIIKQHDFKGELDGLDEDFSVM 792
           MNDWQQCPELGPIGD+LSGS+F VRTSVLII QH+ KGELDGLD+DFS+M
Sbjct: 741 MNDWQQCPELGPIGDILSGSEFSVRTSVLIIHQHNLKGELDGLDDDFSIM 790

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449489161|ref|XP_004158233.1| PREDICTED: cation/H(+) antiporter 28-like [Cucumis sativus]

 Score = 1031 bits (2666), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 496/770 (64%), Positives = 603/770 (78%), Gaps = 6/770 (0%)

Query: 24  FADGSGKIVGLLLAYVLTNLAHHLLKPMHQPRITSDIVIGLFLGNIQPIRNGFELEMIQT 83
           F   +  I+G  +   L N  H+LL+P  QPRITSD ++GL +GN   IR   ++  I+T
Sbjct: 26  FGKATRSILGFFIMMGLCNGVHYLLRPFSQPRITSDTIVGLVVGNF--IRKQLDISTIKT 83

Query: 84  LNYIVEFGMICYMFVLGLEMDPYVIFKPPTRDAIVAYGGMLSTFILGCSLTPFLHYSTHR 143
           L YIV+FGM+CYMFVLGLE+DPYVIFK PTRDA VAY GM+ST IL CS+ PF+     +
Sbjct: 84  LRYIVDFGMVCYMFVLGLEVDPYVIFKAPTRDAKVAYAGMISTLILACSIIPFIGMIKSK 143

Query: 144 KIVVAITLSFTLAGSGSHILTRVITNLKIGKSDIGKLGMAAGIHSDMITMLIICIGAVFV 203
           +I   ++LS  L+ + S +LTR+IT+LKIGKSDIG+L +AAG+HSD I+ L+IC+G +F 
Sbjct: 144 EISFILSLSTVLSSTASPVLTRLITSLKIGKSDIGRLVIAAGMHSDFISTLMICVGYLFC 203

Query: 204 LPQGNNTQEQIQSAIKMSASLIFQSVFAAKVSPVFMNWINNENPEGKAMKGTHLVLSLAF 263
             Q   T+       ++   L+ Q+V  AKVSP FMNW+NNENPEGK MKG HLVL++AF
Sbjct: 204 KCQ--ETRISFIKGFQLGILLLIQAVLTAKVSPAFMNWVNNENPEGKPMKGPHLVLAVAF 261

Query: 264 MVAVCSCSPFYGYSPILSAFMAGIFFPSEGRMSKWTVGKVNYLLSTLYYPIFFFWMGFHA 323
           M  +C C   +GY+PILSAF+AG F P EGR+S+W +GK+NYLL+T++YPIFFFWMG  +
Sbjct: 262 MAFLCCCPTVFGYNPILSAFLAGTFLPREGRVSRWAIGKINYLLTTVFYPIFFFWMGVES 321

Query: 324 KLFTFEADTLGTWGRFFFLIVISTAGKVVGTVICGLMLGFHWPESVSLGLLLSAKGHFYI 383
           KL  FE   + TW R   L  I+T GKVVGTVI G +LGFHWPESV+LGLLL+ KGHF+I
Sbjct: 322 KLTDFEPGQIMTWVRLILLFAIATLGKVVGTVIAGAILGFHWPESVALGLLLTMKGHFHI 381

Query: 384 FLAIMGAVHNYITHTTAASLVIMIFFTIVHTPFVVQNIIGRARKHAPTKRMALQWLDPSN 443
           +LAI       IT +T+  +VI+IFFTIVH P VV +II RARK  PT RMALQ LDPS+
Sbjct: 382 YLAIAAKTAGKITTSTSIVMVIVIFFTIVHAPKVVAHIIQRARKRTPTHRMALQLLDPSS 441

Query: 444 QLQILLCLHGSQNITSTLNFLEISRGTANPGVAVYVTDMIELTDQIAATLVQNEGIDTVT 503
           +L+ILLC+HG QN  + +N +EISRGTANPGV VYVTDMIELTD+IA+TLVQ EG+D+VT
Sbjct: 442 ELKILLCIHGPQNTPAAINIMEISRGTANPGVVVYVTDMIELTDEIASTLVQGEGVDSVT 501

Query: 504 VTDKAVMEMREEITTAVQSYVDENGGGITLKRMLALSTFSGMPQDICILAEDLMVSLIIL 563
           VT   V +MRE++T+AVQSYVDENG GITL+RMLALSTF+ M QDICILAE+LM +LIIL
Sbjct: 502 VTHTGVTQMREQVTSAVQSYVDENGEGITLRRMLALSTFNSMAQDICILAEELMGALIIL 561

Query: 564 PFHKRQLEDGTLDEGHPGFRYVNRKLLRNATCSVGILVDRGFGSIENISRSQAASLNVAV 623
           PFHK Q  DG+L EG   FRYVNRK+LR+A CSVGILVDRG GS+E ISRS   S NVAV
Sbjct: 562 PFHKSQRGDGSLSEGQTAFRYVNRKVLRHAPCSVGILVDRGLGSVEKISRSY-VSQNVAV 620

Query: 624 IFIGGKDDREALAYASRVARHPAVKLTVIRFLLD-NSENPQRRAATYKDNTAELEEEMKI 682
           IFIGGKDDREALAYA RVARHP VKL+VIRFL+D ++ N  RRA TY+ + AE EEEM+ 
Sbjct: 621 IFIGGKDDREALAYAGRVARHPGVKLSVIRFLVDADAVNAARRAGTYRISVAEQEEEMRQ 680

Query: 683 DDECFAEFYERQVAEGHVAYAEKHLANSSETFATLRSLEGQYALIIVGRGERANSILTVG 742
           DDECFA FYER VA GHVAY EKHLA+SSET++TL+SLEGQYALIIVGRG + N++LT G
Sbjct: 681 DDECFAYFYERHVAGGHVAYVEKHLASSSETYSTLKSLEGQYALIIVGRGGKVNTVLTFG 740

Query: 743 MNDWQQCPELGPIGDVLSGSDFLVRTSVLIIKQHDFKGELDGLDEDFSVM 792
           MNDWQQCPELGPIGD+LSGS+F VRTSVLII QH+ KGELDGLD+DFS+M
Sbjct: 741 MNDWQQCPELGPIGDILSGSEFSVRTSVLIIHQHNLKGELDGLDDDFSIM 790

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356544289|ref|XP_003540586.1| PREDICTED: cation/H(+) antiporter 28-like [Glycine max]

 Score =  907 bits (2344), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 438/785 (55%), Positives = 574/785 (73%), Gaps = 11/785 (1%)

Query: 15  KCKDFVGVTFADGSGKIVGLLLAYVLTNLAHHLLKPMHQPRITSDIVIGLFLGNIQPIRN 74
           +C + +G          +  +   V  N AH LLKP  QPR+ SDI++GL +GNI  +R 
Sbjct: 7   QCSEKLGYLILQLGKNFLVFMAMVVACNGAHFLLKPYSQPRVASDIMVGLIMGNIPFLRE 66

Query: 75  GFELEMIQTLNYIVEFGMICYMFVLGLEMDPYVIFKPPTRDAIVAYGGMLSTFILGCSLT 134
            +E E  +T  +I++FGM+CYMF LG+EMDPY++FK PT+DA VAY  +L TFI+ CS+T
Sbjct: 67  LYE-EFNKTFGFIIDFGMMCYMFALGIEMDPYMLFKRPTKDAQVAYAAILCTFIICCSMT 125

Query: 135 PFLHYSTHRK-IVVAITLSFTLAGSGSHILTRVITNLKIGKSDIGKLGMAAGIHSDMITM 193
           P   Y TH+  +   ++LS  ++ + S +LTR+IT+LKIGKSDIG L + AG+HSD +  
Sbjct: 126 PLFRYFTHQHGLAFTLSLSALVSSTASPVLTRLITSLKIGKSDIGSLVIGAGMHSDFLCS 185

Query: 194 LIICIGAVFVLPQ-----GNNTQEQIQSAIKMSASLIFQSVFAAKVSPVFMNWINNENPE 248
           L++ +G +F +P      G    + + + I +S  ++ Q++F A VSPVFM W+NNENPE
Sbjct: 186 LLLSVGYIF-MPSDAYCIGTKKDKTLLTIITVSIVIVAQTMFTAVVSPVFMAWVNNENPE 244

Query: 249 GKAMKGTHLVLSLAFMVAVCSCSPFYGYSPILSAFMAGIFFPSEGRMSKWTVGKVNYLLS 308
           GK MKG+HL+LS+AF+V +C+ S  Y YSP+LSAFM GI  P EGR+SKW V K+N LL+
Sbjct: 245 GKPMKGSHLILSIAFVVMICASSTLYDYSPVLSAFMTGICLPREGRVSKWVVSKINSLLT 304

Query: 309 TLYYPIFFFWMGFHAKLFTFEADTLGTWGRFFFLIVISTAGKVVGTVICGLMLGFHWPES 368
           T+++P+FF WMG+ A +  F+     TW R    I I   GKVVGT++ G +LGFHWPES
Sbjct: 305 TIFFPVFFLWMGYVADITKFDPGDPTTWLRVILPIAIVVVGKVVGTLVAGALLGFHWPES 364

Query: 369 VSLGLLLSAKGHFYIFLAIMGAVHNYITHTTAASL-VIMIFFTIVHTPFVVQNIIGRARK 427
           +++GLLL  KGHF I++AI G      T +++  + VI IF T+VH P VV  II RARK
Sbjct: 365 IAIGLLLITKGHFQIYMAIKGLSCGTATTSSSGIISVITIFLTLVHAPIVVAQIIKRARK 424

Query: 428 HAPTKRMALQWLDPSNQLQILLCLHGSQNITSTLNFLEISRGTANPGVAVYVTDMIELTD 487
            APT   ALQ LDP ++L+I LCLHG  N+ +++NF+EISRG+A+ G+ VYV ++IELTD
Sbjct: 425 RAPTHSNALQLLDPLSELRIFLCLHGLDNVPASINFMEISRGSADSGILVYVAEIIELTD 484

Query: 488 QIAATLVQNEGIDTVTVTDKAVMEMREEITTAVQSYVDENGGGITLKRMLALSTFSGMPQ 547
           QIAAT+   EG+ T T+ DK V E+RE++T++ Q+YVD +G GIT KR LA+ST + M +
Sbjct: 485 QIAATMESGEGVHTTTIKDKEVTEIREQVTSSFQAYVDRDGDGITFKRSLAVSTITNMAK 544

Query: 548 DICILAEDLMVSLIILPFHKRQLEDGTLDEGHPGFRYVNRKLLRNATCSVGILVDRGFGS 607
           +IC+LAEDLM++LIILPFH++Q +DG LD G+PGFRYVNRKLL++A CSVGILV+RGFGS
Sbjct: 545 NICVLAEDLMIALIILPFHRKQRQDGKLDGGNPGFRYVNRKLLKSAPCSVGILVNRGFGS 604

Query: 608 IENISRSQAASLNVAVIFIGGKDDREALAYASRVARHPAVKLTVIRFLLDNSENPQRRAA 667
           IE ISR +A  L VAVIFIGGKDDREALAY  RVA HP VK+ VIRFL+D +E   R AA
Sbjct: 605 IEKISRFEAL-LKVAVIFIGGKDDREALAYVGRVAWHPGVKVIVIRFLVDTNEESSRLAA 663

Query: 668 TYKDNTAELEEEMKIDDECFAEFYERQVAEGHVAYAEKHLANSSETFATLRSLEGQYALI 727
            ++    E EEEM +DDECFA+FYER +  G ++Y EKHLAN+SETF+TLRS EGQY+L+
Sbjct: 664 -HRVTLTEQEEEMGLDDECFAQFYERYIVGGRISYMEKHLANASETFSTLRSFEGQYSLV 722

Query: 728 IVGRGERANSILTVGMNDWQQCPELGPIGDVLSGSDFLVRTSVLIIKQHDFKGELDGLDE 787
           IVGR   ANSILT GMNDWQQCPELGPIGDVLSG DF    SVLII+QH  +GELDGLDE
Sbjct: 723 IVGREGGANSILTKGMNDWQQCPELGPIGDVLSGPDFSTSVSVLIIQQHKLRGELDGLDE 782

Query: 788 DFSVM 792
           +FS+M
Sbjct: 783 EFSIM 787

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147816212|emb|CAN62060.1| hypothetical protein VITISV_024100 [Vitis vinifera]

 Score =  885 bits (2287), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 444/782 (56%), Positives = 574/782 (73%), Gaps = 6/782 (0%)

Query: 14  QKCKDFVGVTFADGSGKIVGLLLAYVLTNLAHHLLKPMHQPRITSDIVIGLFLGNIQPIR 73
           Q CK  V      G+  I+G LL   L+N+AH LL+   QPR+ ++ ++G+  GNI   +
Sbjct: 17  QPCKHLVA-NATGGASYILGFLLVVFLSNIAHALLRTFQQPRMVAETLVGIIAGNIVLTQ 75

Query: 74  NGFELEMIQTLNYIVEFGMICYMFVLGLEMDPYVIFKPPTRDAIVAYGGMLSTFILGCSL 133
                 + QTL+ I +FGMIC+MF LGLEMDP ++F+ PTR+A+VAY GMLSTFIL C L
Sbjct: 76  EELFANIQQTLDNIKDFGMICHMFALGLEMDPCILFQRPTREAMVAYSGMLSTFILACLL 135

Query: 134 TPFLHYSTHRKIVVAITLSFTLAGSGSHILTRVITNLKIGKSDIGKLGMAAGIHSDMITM 193
           TPF HYS         +LS TL G+ S +LTR+IT+LKIGKSDIG+L +AAGIHSD+++ 
Sbjct: 136 TPFFHYSEVPNYKFTFSLSVTLTGTASPLLTRIITDLKIGKSDIGRLVVAAGIHSDLVST 195

Query: 194 LIICIGAVFVLPQGNNTQEQIQSAIKMSASLIFQSVFAAKVSPVFMNWINNENPEGKAMK 253
           L+I IG V +    N +    +S + ++++LI Q++  A +SP+FM W+N+ENPEGK +K
Sbjct: 196 LLISIGFVILSADKNLSVRDCKSILTITSTLIPQALITAMISPIFMGWVNHENPEGKPLK 255

Query: 254 GTHLVLSLAFMVAVCSCSPFYGYSPILSAFMAGIFFPSEGRMSKWTVGKVNYLLSTLYYP 313
           G+H+VLS+AF+V  CSCS   GYSP++SAF++GI  P EGR+SK  + KVNY L+ ++YP
Sbjct: 256 GSHMVLSVAFVVISCSCSALAGYSPVMSAFISGIALPREGRLSKMMISKVNYFLNNIFYP 315

Query: 314 IFFFWMGFHAKLFTFEADTLGTWGRFFFLIVISTAGKVVGTVICGLMLGFHWPESVSLGL 373
           IFF W+G       F   +  TW R  F+ VI+T GKVVGT + GLM GF+ PESV+LGL
Sbjct: 316 IFFVWVGLMVIFPKFHPGSPWTWARMIFIFVIATLGKVVGTFLSGLMFGFNHPESVALGL 375

Query: 374 LLSAKGHFYIFLAIMGAVHNYITHTTAASLVIMIFFTIVHTPFVVQNIIGRA-RKHAPTK 432
           LL+ KGHF+++LA+    +   T++T   L + IF T+V+ P VV  IIGRA RK +P +
Sbjct: 376 LLNVKGHFHMYLALSAVQNEITTNSTGIGLTLAIFCTVVYAPSVVAYIIGRARRKRSPNQ 435

Query: 433 RMALQWLDPSNQLQILLCLHGSQNITSTLNFLEISRGTANPGVAVYVTDMIELTDQIAAT 492
           RMALQWLDP+N+L+ILLC+HG Q + S +NF+EISRG  +P + VYVTDMIELT+QI +T
Sbjct: 436 RMALQWLDPTNELRILLCVHGPQELPSAINFIEISRGRDDPAIMVYVTDMIELTEQIEST 495

Query: 493 LVQNEGIDTVTVTDKAVMEMREEITTAVQSYVDENG-GGITLKRMLALSTFSGMPQDICI 551
           LV+NEG++  TVTDK V+EMR++IT+A+++Y +E+   G+TL+RMLALS+FS M QDI I
Sbjct: 496 LVRNEGMEVATVTDKIVVEMRDQITSAIKTYEEEHSESGVTLRRMLALSSFSVMHQDISI 555

Query: 552 LAEDLMVSLIILPFHKRQLEDGTLDEGHPGFRYVNRKLLRNATCSVGILVDRGFGSIENI 611
           LAE+L+VSL++LPFHK Q  DG + E     RYVNRK+L+ A CSVGILVDRGFG    I
Sbjct: 556 LAENLLVSLVVLPFHKYQASDGNMIEAQSKLRYVNRKVLQYAPCSVGILVDRGFGVTNKI 615

Query: 612 SRSQAASLNVAVIFIGGKDDREALAYASRVARHPAVKLTVIRFLLD-NSENPQRRAATYK 670
           SRS +  LN AVIFIGGKDDREALAYAS VA HP VKLTVIRFLLD N+     R  T K
Sbjct: 616 SRS-SIFLNAAVIFIGGKDDREALAYASHVALHPGVKLTVIRFLLDTNAIAKSTRLGTCK 674

Query: 671 DNTAELEEEMKIDDECFAEFYERQVAEGHVAYAEKHLANSSETFATLRSLEGQYALIIVG 730
            +  E EEEMK+DDE FA+FYER V  GHVAY EK+LANS+ET + L+SLEG+Y LIIVG
Sbjct: 675 ISLPEQEEEMKLDDEFFADFYERHVG-GHVAYVEKYLANSAETMSALQSLEGKYGLIIVG 733

Query: 731 RGERANSILTVGMNDWQQCPELGPIGDVLSGSDFLVRTSVLIIKQHDFKGELDGLDEDFS 790
           RG R NS LT GMNDW+QCPELGPIGD+LSGS  +V  S+LII+QH  KGE+ GL E+FS
Sbjct: 734 RGGRVNSALTAGMNDWEQCPELGPIGDLLSGSSSVVSASILIIQQHRPKGEIAGLTEEFS 793

Query: 791 VM 792
           VM
Sbjct: 794 VM 795

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297816480|ref|XP_002876123.1| hypothetical protein ARALYDRAFT_485568 [Arabidopsis lyrata subsp. lyrata] gi|297321961|gb|EFH52382.1| hypothetical protein ARALYDRAFT_485568 [Arabidopsis lyrata subsp. lyrata]

 Score =  868 bits (2242), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 438/802 (54%), Positives = 572/802 (71%), Gaps = 19/802 (2%)

Query: 8   NGTSPAQKCKD--FVGVTFADGSGKIVGLLLAYVLTNLAHHLLKPMHQPRITSDIVIGLF 65
           N T+    C D  ++ +   + + KI+G +  +V+  L HHL+KP+ QP +T+D  IGL 
Sbjct: 2   NTTTTKNVCGDKWYLNLDKPEEALKILGFIAIFVIRTLLHHLMKPLGQPYLTTDFAIGLI 61

Query: 66  LGNIQPIRNGFELEMIQTLNYIVEFGMICYMFVLGLEMDPYVIFKPPTRDAIVAYGGMLS 125
           LGN+   R  F      TLN I+EFGMIC+MFV+GLEM+P V+ +PPT+DA +AY  M++
Sbjct: 62  LGNLPKFREAFSGPYSITLNNIIEFGMICHMFVMGLEMNPSVLLRPPTKDAFIAYTSMIT 121

Query: 126 TFILGCSLTPFLHYSTHRKIVVAITLSFTLAGSGSHILTRVITNLKIGKSDIGKLGMAAG 185
           TF+L    TPFLHY+     + ++ LS   + +GS ILTRVI NLKI KSD+GKL  AAG
Sbjct: 122 TFVLAFVTTPFLHYTKTAPYIFSLALSLMASSTGSPILTRVIANLKIRKSDLGKLASAAG 181

Query: 186 IHSDMITMLIICIGAVFVLPQGNNTQEQIQS---AIKMSASLIFQSVFAAKVSPVFMNWI 242
           +H+DMI+ L  C G +F  P        +     A+ M    + Q  F + VSP+F+NW+
Sbjct: 182 VHTDMISTLFYCFGFIF-FPTEKPLARPLHRFFRALLMFCLFLAQVTFTSIVSPIFLNWV 240

Query: 243 NNENPEGKAMKGTHLVLSLAFMVAVCS---CSPFYGYSPILSAFMAGIFFPSEGRMSKWT 299
           NNENPEGK +KG+HLV+SLAF+V +CS     P   Y+PILSAF AG+F P++GRMSKW 
Sbjct: 241 NNENPEGKPLKGSHLVMSLAFVVLICSFPTWPPESMYNPILSAFTAGLFLPNKGRMSKWI 300

Query: 300 VGKVNYLLSTLYYPIFFFWMGFHAKLFTFEADTLGTWGRFFFLIVISTAGKVVGTVICGL 359
           + K+NYLLST++YPIFFFW+GF   +  F+      W RFF L+     GKV GTV+CGL
Sbjct: 301 INKINYLLSTVFYPIFFFWVGFIIHMRNFDITDKMAWARFFALLGTVIVGKVTGTVLCGL 360

Query: 360 MLGFHWPESVSLGLLLSAKGHFYIFLAIMGAVHNYITHTTAASLVIMIFFTIVHTPFVVQ 419
           +LG+H PE+ SLGLLL+AKGHF+++LA +    N + +TT A ++ +I  T+V++PFVV 
Sbjct: 361 LLGYHVPETASLGLLLTAKGHFHVYLAALAIRTNRVKNTTGAMIIFVIVLTVVYSPFVVM 420

Query: 420 NIIGRARKHAPTKRMALQWLDPSNQLQILLCLHGSQNITSTLNFLEISRGTANPGVAVYV 479
           +II RARK  P   MALQWLDP+ +L+IL+ LHG  NI STLN +EI  G   PG   Y 
Sbjct: 421 DIIKRARKRVPVHIMALQWLDPTTELRILIGLHGPHNIGSTLNLMEICHGGREPGSIFYA 480

Query: 480 TDMIELTDQIAATLVQNEGI----DTVTVTDKAVMEMREEITTAVQSYVD-ENGGGITLK 534
           TDM+ELTD+IAATL +  G     D+VT+TD++V EMRE IT AV  Y +  NG G+T++
Sbjct: 481 TDMVELTDEIAATLKKGGGADQSNDSVTITDRSVTEMRESITAAVNGYGELRNGQGVTVR 540

Query: 535 RMLALSTFSGMPQDICILAEDLMVSLIILPFHKRQLEDGTLDEGHPGFRYVNRKLLRNAT 594
           RMLALSTF  M QDIC LA++LMVS+IILPFHKR   DGTLD GH GFR+VNRK+L+NA 
Sbjct: 541 RMLALSTFVTMAQDICGLADELMVSIIILPFHKRLNPDGTLDSGHAGFRHVNRKILKNAP 600

Query: 595 CSVGILVDRGFGSIENISRSQAASLNVAVIFIGGKDDREALAYASRVARHPAVKLTVIRF 654
           CSVGILVDR FG  E   R   AS+++A+IFIGG+DDREALA+A++VARHPAVKL VIRF
Sbjct: 601 CSVGILVDRSFGQTEEAWRP-GASMDIAIIFIGGRDDREALAFAAQVARHPAVKLKVIRF 659

Query: 655 LLD-NSENPQRRAATY-KDNTAELEEEMKIDDECFAEFYERQVA-EGHVAYAEKHLANSS 711
           L D +S+N Q+R++   + +  E EEEMK+DDECFAEFYER +A  G V+Y EKHL NSS
Sbjct: 660 LEDKSSQNAQKRSSILNRASVVEQEEEMKLDDECFAEFYERYIAGGGRVSYMEKHLTNSS 719

Query: 712 ETFATLRSLEGQYALIIV-GRGERANSILTVGMNDWQQCPELGPIGDVLSGSDFLVRTSV 770
           ETF  L+SL+G+Y L+IV   G RA+S LT G+NDWQQCPELGPIGDVLSGSDF   TS+
Sbjct: 720 ETFTALKSLDGEYGLVIVGRGGGRASSGLTTGLNDWQQCPELGPIGDVLSGSDFSHNTSM 779

Query: 771 LIIKQHDFKGELDGLDEDFSVM 792
           LII+Q   +G+L+GL +DF+++
Sbjct: 780 LIIQQQRTRGQLEGLHDDFTIL 801

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356537296|ref|XP_003537165.1| PREDICTED: cation/H(+) antiporter 28-like [Glycine max]

 Score =  865 bits (2234), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 433/790 (54%), Positives = 560/790 (70%), Gaps = 18/790 (2%)

Query: 13  AQKCKDFVG---VTFADGSGKIVGLLLAYVLTNLAHHLLKPMHQPRITSDIVIGLFLGNI 69
           A  C D +G   +  A      +G+++A    N  H LLKP  QPRITSDI++GL +G I
Sbjct: 12  ATVCGDKLGNLILELAKNFAIYIGMVIA---CNGLHLLLKPYKQPRITSDIIVGLVVGRI 68

Query: 70  QPIRNGFELEMIQTLNYIVEFGMICYMFVLGLEMDPYVIFKPPTRDAIVAYGGMLSTFIL 129
             +R  F  +   T  +I++FGM CYMF LG+EMDP+ +F  P R   VA+ G+L T ++
Sbjct: 69  GFVRRLFA-KFNLTFGFIIDFGMTCYMFALGIEMDPHALFARPNRYTKVAFTGVLCTLVV 127

Query: 130 GCSLTPFLHY--STHRKIVVAITLSFTLAGSGSHILTRVITNLKIGKSDIGKLGMAAGIH 187
               TP   Y  S HR I   +  +   A + S +LTR+IT LKIGKSDIGKL + AG+H
Sbjct: 128 TGISTPIFRYFPSHHRLIDFTLCFATLAASTDSPVLTRLITQLKIGKSDIGKLVIGAGVH 187

Query: 188 SDMITMLIICIGAVFV-LPQGNNTQEQ---IQSAIKMSASLIFQSVFAAKVSPVFMNWIN 243
           SD +  LI+CIG + + LP+  +  E    I+ +++M  +++ Q VF A VSP+ M W+ 
Sbjct: 188 SDFVCCLILCIGYIVLPLPEFCHHLEDKMDIKKSLQMGCAVVVQVVFTAMVSPILMKWVG 247

Query: 244 NENPEGKAMKGTHLVLSLAFMVAVCSCSPFYGYSPILSAFMAGIFFPSEGRMSKWTVGKV 303
           NENPEG+ MKG HL+LSLAFMV +C+ +  Y Y PILSAF+ G+  P EGR+SKW + K+
Sbjct: 248 NENPEGRPMKGPHLILSLAFMVLMCASTTMYYYHPILSAFLVGLCVPREGRVSKWVITKI 307

Query: 304 NYLLSTLYYPIFFFWMGFHAKLFTFEADTLGTWGRFFFLIVISTAGKVVGTVICGLMLGF 363
           NYL++T+++PIFF WMG+       +A    TW R   L  ++TAGKV GTVI G MLGF
Sbjct: 308 NYLMTTIFFPIFFLWMGYETDFTMIDAPNAFTWIRLVVLFTVATAGKVAGTVISGAMLGF 367

Query: 364 HWPESVSLGLLLSAKGHFYIFLAIMGAVHNYITHTTAASLVIMIFFTIVHTPFVVQNIIG 423
           HWPESV++G+LL  KGH  I+LAI        + +T   +VI  F T +  P +V  II 
Sbjct: 368 HWPESVAIGMLLVTKGHLQIYLAIKVVSCGATSMSTGIVMVIATFLTTLPAPTIVAKIIK 427

Query: 424 RARKHAPTKRMALQWLDPSNQLQILLCLHGSQNITSTLNFLEISRGTANPGVAVYVTDMI 483
           RARK APT R+ALQ LDP ++L+ILLC+ G QN+ +++N +EI++GTA+  + +YVTDMI
Sbjct: 428 RARKRAPTHRLALQLLDPLSELRILLCVQGPQNVPASINLVEITKGTADTSIVLYVTDMI 487

Query: 484 ELTDQIAATLVQNEGIDTVTVTDKAVMEMREEITTAVQSYVDENGGGITLKRMLALSTFS 543
           ELTD+++ TL ++EG+ T TV DK VM+MR+++T   Q+YV EN  GITLKR +ALST +
Sbjct: 488 ELTDELSDTLERDEGVHTTTVKDKEVMDMRDQVTNLFQAYVVENDDGITLKRTMALSTIT 547

Query: 544 GMPQDICILAEDLMVSLIILPFHKRQLEDGTLDEGHPGFRYVNRKLLRNATCSVGILVDR 603
            MPQDICILAEDLMV+LIILPFH+ Q EDG LD G+ GFRYVNRK+LRNA CSVGILVDR
Sbjct: 548 SMPQDICILAEDLMVALIILPFHRSQREDGKLDGGNSGFRYVNRKVLRNAPCSVGILVDR 607

Query: 604 GFGSIENISRSQAASLNVAVIFIGGKDDREALAYASRVARHPAVKLTVIRFLLDNSENPQ 663
           G GS+E+I+R Q A +NV VIFIGGKDDREALAYASRVA+HP VKLTVIRFL D+S    
Sbjct: 608 GLGSVEHITRCQVA-VNVGVIFIGGKDDREALAYASRVAQHPQVKLTVIRFLEDSS---V 663

Query: 664 RRAATYKDNTAELEEEMKIDDECFAEFYERQV-AEGHVAYAEKHLANSSETFATLRSLEG 722
             ++ ++    E E+E ++DDECF +FYER V   G ++Y EKHLAN+SETF+TLRS EG
Sbjct: 664 ESSSLFRIILPEQEQEKQLDDECFTQFYERHVIGGGRISYMEKHLANASETFSTLRSFEG 723

Query: 723 QYALIIVGRGERANSILTVGMNDWQQCPELGPIGDVLSGSDFLVRTSVLIIKQHDFKGEL 782
           QY+L+IVGR    NSILT GMNDWQQCPELGPIGDVLSGSDF    SVLII+QH  KGE+
Sbjct: 724 QYSLVIVGREGGMNSILTRGMNDWQQCPELGPIGDVLSGSDFSTTLSVLIIQQHRLKGEI 783

Query: 783 DGLDEDFSVM 792
           DGLDEDFS++
Sbjct: 784 DGLDEDFSMI 793

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|79441748|ref|NP_190776.2| cation/H(+) antiporter 28 [Arabidopsis thaliana] gi|298351604|sp|Q8L709.2|CHX28_ARATH RecName: Full=Cation/H(+) antiporter 28; AltName: Full=Protein CATION/H+ EXCHANGER 28; Short=AtCHX28 gi|332645367|gb|AEE78888.1| cation/H(+) antiporter 28 [Arabidopsis thaliana]

 Score =  859 bits (2220), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 436/802 (54%), Positives = 570/802 (71%), Gaps = 19/802 (2%)

Query: 8   NGTSPAQKCKD--FVGVTFADGSGKIVGLLLAYVLTNLAHHLLKPMHQPRITSDIVIGLF 65
           N T+    C D  ++ +   + + KI+  +  +V+  L H+L+KP+ QP +T+D  IGL 
Sbjct: 2   NSTTTKNVCGDKWYLNLDRPEEALKILVFIAIFVVRTLLHYLMKPLGQPYLTTDFAIGLI 61

Query: 66  LGNIQPIRNGFELEMIQTLNYIVEFGMICYMFVLGLEMDPYVIFKPPTRDAIVAYGGMLS 125
           LGNI   R  F      TLN I+EFGMIC+MFV+GLEM+P V+ +PPT+DA +AY  M++
Sbjct: 62  LGNIPRFRGAFSGPYSITLNNIIEFGMICHMFVMGLEMNPSVLLRPPTKDAFIAYTSMIT 121

Query: 126 TFILGCSLTPFLHYSTHRKIVVAITLSFTLAGSGSHILTRVITNLKIGKSDIGKLGMAAG 185
           TF+L    TPFLHY+     + ++ LS   + +GS ILTRVI NLKI KSD+GKL  AAG
Sbjct: 122 TFVLAFVTTPFLHYTKTSPYIFSLALSLMASSTGSPILTRVIANLKIRKSDLGKLASAAG 181

Query: 186 IHSDMITMLIICIGAVFVLPQGNNTQEQIQS---AIKMSASLIFQSVFAAKVSPVFMNWI 242
           +H+DMI+ L+ C G +F  P        +     A+ M    + Q  F + VSP+F+NW+
Sbjct: 182 VHTDMISTLLYCFGFIF-FPTEKPLARPLHRFFRALLMFCLFLAQVTFTSIVSPIFLNWV 240

Query: 243 NNENPEGKAMKGTHLVLSLAFMVAVCS---CSPFYGYSPILSAFMAGIFFPSEGRMSKWT 299
           NNENPEGK +KG+HLV+SLAF+V +CS     P   Y+PILSAF AG+F P++GRMSKW 
Sbjct: 241 NNENPEGKPLKGSHLVMSLAFVVLICSFPTWPPESMYNPILSAFTAGLFLPNKGRMSKWI 300

Query: 300 VGKVNYLLSTLYYPIFFFWMGFHAKLFTFEADTLGTWGRFFFLIVISTAGKVVGTVICGL 359
           + K+NYLLST++YPIFFFW+GF   +  F+      W RFF L+    AGKV GTV+CGL
Sbjct: 301 INKINYLLSTVFYPIFFFWVGFIIHMRNFDITDKMAWVRFFSLLGTVIAGKVTGTVLCGL 360

Query: 360 MLGFHWPESVSLGLLLSAKGHFYIFLAIMGAVHNYITHTTAASLVIMIFFTIVHTPFVVQ 419
           +LG+H PE+ SLGLLL+ KGHF+++LA +    N +  TT A ++ +I FT+V++PFVV 
Sbjct: 361 LLGYHVPETASLGLLLTTKGHFHVYLAALAIRTNRVKSTTGALIIFIIVFTVVYSPFVVM 420

Query: 420 NIIGRARKHAPTKRMALQWLDPSNQLQILLCLHGSQNITSTLNFLEISRGTANPGVAVYV 479
           +II RARK  P   MALQWLDP+ +L+IL+ LHG  NI STLN +EI  G   PG   Y 
Sbjct: 421 DIIKRARKRVPVHIMALQWLDPTTELRILIGLHGPHNIGSTLNVMEICHGGREPGSIFYA 480

Query: 480 TDMIELTDQIAATLVQNEGI----DTVTVTDKAVMEMREEITTAVQSYVD-ENGGGITLK 534
           TDM+ELTD+IAATL +  G     D+VTVTD++V EMRE IT AV  Y +  NG G+T++
Sbjct: 481 TDMVELTDEIAATLKKGGGAGQSNDSVTVTDRSVTEMRESITAAVNGYGELRNGQGVTVR 540

Query: 535 RMLALSTFSGMPQDICILAEDLMVSLIILPFHKRQLEDGTLDEGHPGFRYVNRKLLRNAT 594
           RMLALSTF  M  D+C LA++LMVS+IILPFHKR   DGTLD GH GFR+VNRK+L+NA 
Sbjct: 541 RMLALSTFVTMAHDVCGLADELMVSIIILPFHKRLNPDGTLDAGHAGFRHVNRKILKNAP 600

Query: 595 CSVGILVDRGFGSIENISRSQAASLNVAVIFIGGKDDREALAYASRVARHPAVKLTVIRF 654
           CSVGILVDR FG  E   R   AS+ +A+IFIGG+DDREALA+A++VARHPAVKL VIRF
Sbjct: 601 CSVGILVDRSFGQTEEAWRP-GASMGIAIIFIGGRDDREALAFAAQVARHPAVKLKVIRF 659

Query: 655 LLD-NSENPQRRAATY-KDNTAELEEEMKIDDECFAEFYERQVA-EGHVAYAEKHLANSS 711
           L D +S+N Q+R++   + +  + EEEMK+DDECFAEFYER +A  G V+Y EKHL NSS
Sbjct: 660 LEDKSSQNAQKRSSILNRASVVDQEEEMKLDDECFAEFYERYIAGGGRVSYMEKHLTNSS 719

Query: 712 ETFATLRSLEGQYALIIV-GRGERANSILTVGMNDWQQCPELGPIGDVLSGSDFLVRTSV 770
           ETF  L+SL+G+Y L+IV   G RA+S LT G+NDWQQCPELGPIGDVLSGSDF   TS+
Sbjct: 720 ETFTALKSLDGEYGLVIVGRGGGRASSGLTTGLNDWQQCPELGPIGDVLSGSDFSHNTSM 779

Query: 771 LIIKQHDFKGELDGLDEDFSVM 792
           LII+Q   +G+L+GL +DF+++
Sbjct: 780 LIIQQQRTRGQLEGLHDDFTIL 801

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|22655170|gb|AAM98175.1| putative protein [Arabidopsis thaliana]

 Score =  858 bits (2216), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 436/802 (54%), Positives = 569/802 (70%), Gaps = 19/802 (2%)

Query: 8   NGTSPAQKCKD--FVGVTFADGSGKIVGLLLAYVLTNLAHHLLKPMHQPRITSDIVIGLF 65
           N T+    C D  ++ +   + + KI+  +  +V+  L H+L+KP+ QP +T+D  IGL 
Sbjct: 2   NSTTTKNVCGDKWYLNLDRPEEALKILVFIAIFVVRTLLHYLMKPLGQPYLTTDFAIGLI 61

Query: 66  LGNIQPIRNGFELEMIQTLNYIVEFGMICYMFVLGLEMDPYVIFKPPTRDAIVAYGGMLS 125
           LGNI   R  F      TLN I+EFGMIC+MFV+GLEM+P V+ +PPT+DA +AY  M++
Sbjct: 62  LGNIPRFRGAFSGPYSITLNNIIEFGMICHMFVMGLEMNPSVLLRPPTKDAFIAYTSMIT 121

Query: 126 TFILGCSLTPFLHYSTHRKIVVAITLSFTLAGSGSHILTRVITNLKIGKSDIGKLGMAAG 185
           TF+L    TPFLHY+     + ++ LS   + +GS ILTRVI NLKI KSD+GKL  AAG
Sbjct: 122 TFVLAFVTTPFLHYTKTSPYIFSLALSLMASSTGSPILTRVIANLKIRKSDLGKLASAAG 181

Query: 186 IHSDMITMLIICIGAVFVLPQGNNTQEQIQS---AIKMSASLIFQSVFAAKVSPVFMNWI 242
           +H+DMI+ L+ C G +F  P        +     A+ M    + Q  F + VSP+F+NW+
Sbjct: 182 VHTDMISTLLYCFGFIF-FPTEKPLARPLHRFFRALLMFCLFLAQVTFTSIVSPIFLNWV 240

Query: 243 NNENPEGKAMKGTHLVLSLAFMVAVCS---CSPFYGYSPILSAFMAGIFFPSEGRMSKWT 299
           NNENPEGK +KG+HLV+SLAF+V +CS     P   Y+PILSAF AG+F P++GRMSKW 
Sbjct: 241 NNENPEGKPLKGSHLVMSLAFVVLICSFPTWPPELMYNPILSAFTAGLFLPNKGRMSKWI 300

Query: 300 VGKVNYLLSTLYYPIFFFWMGFHAKLFTFEADTLGTWGRFFFLIVISTAGKVVGTVICGL 359
           + K+NYLLST++YPIFFFW+GF   +  F+      W RFF L+    AGKV GTV+CGL
Sbjct: 301 INKINYLLSTVFYPIFFFWVGFIIHMRNFDITDKMAWVRFFSLLGTVIAGKVTGTVLCGL 360

Query: 360 MLGFHWPESVSLGLLLSAKGHFYIFLAIMGAVHNYITHTTAASLVIMIFFTIVHTPFVVQ 419
           +LG+H PE+ SLGLLL+ KGHF+++LA +    N +  TT A ++ +I FT+V++PFVV 
Sbjct: 361 LLGYHVPETASLGLLLTTKGHFHVYLAALAIRTNRVKSTTGALIIFIIVFTVVYSPFVVM 420

Query: 420 NIIGRARKHAPTKRMALQWLDPSNQLQILLCLHGSQNITSTLNFLEISRGTANPGVAVYV 479
           +II RARK  P   MALQWLDP+ +L+IL+ LHG  NI STLN +EI  G   PG   Y 
Sbjct: 421 DIIKRARKRVPVHIMALQWLDPTTELRILIGLHGPHNIGSTLNVMEICHGGREPGSIFYA 480

Query: 480 TDMIELTDQIAATLVQNEGI----DTVTVTDKAVMEMREEITTAVQSYVD-ENGGGITLK 534
           TDM+ELTD+IAATL +  G     D+VTVTD++V EMRE IT AV  Y +  NG G+T++
Sbjct: 481 TDMVELTDEIAATLKKGGGAGQSNDSVTVTDRSVTEMRESITAAVNGYGELRNGQGVTVR 540

Query: 535 RMLALSTFSGMPQDICILAEDLMVSLIILPFHKRQLEDGTLDEGHPGFRYVNRKLLRNAT 594
           RMLALSTF  M  D+C LA++LMVS+IILPFHKR   DGTLD GH GFR+VNRK+L NA 
Sbjct: 541 RMLALSTFVTMAHDVCGLADELMVSIIILPFHKRLNPDGTLDAGHAGFRHVNRKILENAP 600

Query: 595 CSVGILVDRGFGSIENISRSQAASLNVAVIFIGGKDDREALAYASRVARHPAVKLTVIRF 654
           CSVGILVDR FG  E   R   AS+ +A+IFIGG+DDREALA+A++VARHPAVKL VIRF
Sbjct: 601 CSVGILVDRSFGQTEEAWRP-GASMGIAIIFIGGRDDREALAFAAQVARHPAVKLKVIRF 659

Query: 655 LLD-NSENPQRRAATY-KDNTAELEEEMKIDDECFAEFYERQVA-EGHVAYAEKHLANSS 711
           L D +S+N Q+R++   + +  + EEEMK+DDECFAEFYER +A  G V+Y EKHL NSS
Sbjct: 660 LEDKSSQNAQKRSSILNRASVVDQEEEMKLDDECFAEFYERYIAGGGRVSYMEKHLTNSS 719

Query: 712 ETFATLRSLEGQYALIIV-GRGERANSILTVGMNDWQQCPELGPIGDVLSGSDFLVRTSV 770
           ETF  L+SL+G+Y L+IV   G RA+S LT G+NDWQQCPELGPIGDVLSGSDF   TS+
Sbjct: 720 ETFTALKSLDGEYGLVIVGRGGGRASSGLTTGLNDWQQCPELGPIGDVLSGSDFSHNTSM 779

Query: 771 LIIKQHDFKGELDGLDEDFSVM 792
           LII+Q   +G+L+GL +DF+++
Sbjct: 780 LIIQQQRTRGQLEGLHDDFTIL 801

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	792
TAIR|locus:2083830	801	chx28 "cation/hydrogen exchang	0.988	0.977	0.546	6.1e-229
TAIR|locus:2054152	821	CHX15 "cation/hydrogen exchang	0.924	0.891	0.319	7.5e-105
TAIR|locus:2090462	800	CHX19 "cation/H+ exchanger 19"	0.912	0.903	0.300	5.4e-86
TAIR|locus:2160457	810	CHX18 "cation/H+ exchanger 18"	0.959	0.938	0.289	1e-84
TAIR|locus:2031968	867	CHX23 "cation/H+ exchanger 23"	0.914	0.835	0.289	1.1e-80
TAIR|locus:2084370	842	CHX20 "cation/H+ exchanger 20"	0.723	0.680	0.267	7.1e-76
TAIR|locus:2128484	820	CHX17 "cation/H+ exchanger 17"	0.925	0.893	0.273	8.1e-76
TAIR|locus:2024578	811	CHX16 "cation/H+ exchanger 16"	0.915	0.893	0.264	6.7e-75
TAIR|locus:2032805	785	ATCHX1 [Arabidopsis thaliana (	0.904	0.912	0.258	2.8e-66
TAIR|locus:2007392	829	CHX14 "cation/hydrogen exchang	0.910	0.869	0.267	1.4e-64

TAIR|locus:2083830 chx28 "cation/hydrogen exchanger 28" [Arabidopsis thaliana (taxid:3702)]

 Score = 2209 (782.7 bits), Expect = 6.1e-229, P = 6.1e-229
 Identities = 438/802 (54%), Positives = 572/802 (71%)

Query:     8 NGTSPAQKCKD--FVGVTFADGSGKIVGLLLAYVLTNLAHHLLKPMHQPRITSDIVIGLF 65
             N T+    C D  ++ +   + + KI+  +  +V+  L H+L+KP+ QP +T+D  IGL 
Sbjct:     2 NSTTTKNVCGDKWYLNLDRPEEALKILVFIAIFVVRTLLHYLMKPLGQPYLTTDFAIGLI 61

Query:    66 LGNIQPIRNGFELEMIQTLNYIVEFGMICYMFVLGLEMDPYVIFKPPTRDAIVAYGGMLS 125
             LGNI   R  F      TLN I+EFGMIC+MFV+GLEM+P V+ +PPT+DA +AY  M++
Sbjct:    62 LGNIPRFRGAFSGPYSITLNNIIEFGMICHMFVMGLEMNPSVLLRPPTKDAFIAYTSMIT 121

Query:   126 TFILGCSLTPFLHYSTHRKIVVAITLSFTLAGSGSHILTRVITNLKIGKSDIGKLGMAAG 185
             TF+L    TPFLHY+     + ++ LS   + +GS ILTRVI NLKI KSD+GKL  AAG
Sbjct:   122 TFVLAFVTTPFLHYTKTSPYIFSLALSLMASSTGSPILTRVIANLKIRKSDLGKLASAAG 181

Query:   186 IHSDMITMLIICIGAVFVLPQGNNTQEQIQS---AIKMSASLIFQSVFAAKVSPVFMNWI 242
             +H+DMI+ L+ C G +F  P        +     A+ M    + Q  F + VSP+F+NW+
Sbjct:   182 VHTDMISTLLYCFGFIF-FPTEKPLARPLHRFFRALLMFCLFLAQVTFTSIVSPIFLNWV 240

Query:   243 NNENPEGKAMKGTHLVLSLAFMVAVCSCS---PFYGYSPILSAFMAGIFFPSEGRMSKWT 299
             NNENPEGK +KG+HLV+SLAF+V +CS     P   Y+PILSAF AG+F P++GRMSKW 
Sbjct:   241 NNENPEGKPLKGSHLVMSLAFVVLICSFPTWPPESMYNPILSAFTAGLFLPNKGRMSKWI 300

Query:   300 VGKVNYLLSTLYYPIFFFWMGFHAKLFTFEADTLGTWGRFFFLIVISTAGKVVGTVICGL 359
             + K+NYLLST++YPIFFFW+GF   +  F+      W RFF L+    AGKV GTV+CGL
Sbjct:   301 INKINYLLSTVFYPIFFFWVGFIIHMRNFDITDKMAWVRFFSLLGTVIAGKVTGTVLCGL 360

Query:   360 MLGFHWPESVSLGLLLSAKGHFYIFLAIMGAVHNYITHTTAASLVIMIFFTIVHTPFVVQ 419
             +LG+H PE+ SLGLLL+ KGHF+++LA +    N +  TT A ++ +I FT+V++PFVV 
Sbjct:   361 LLGYHVPETASLGLLLTTKGHFHVYLAALAIRTNRVKSTTGALIIFIIVFTVVYSPFVVM 420

Query:   420 NIIGRARKHAPTKRMALQWLDPSNQLQILLCLHGSQNITSTLNFLEISRGTANPGVAVYV 479
             +II RARK  P   MALQWLDP+ +L+IL+ LHG  NI STLN +EI  G   PG   Y 
Sbjct:   421 DIIKRARKRVPVHIMALQWLDPTTELRILIGLHGPHNIGSTLNVMEICHGGREPGSIFYA 480

Query:   480 TDMIELTDQIAATLVQNEGI----DTVTVTDKAVMEMREEITTAVQSYVD-ENGGGITLK 534
             TDM+ELTD+IAATL +  G     D+VTVTD++V EMRE IT AV  Y +  NG G+T++
Sbjct:   481 TDMVELTDEIAATLKKGGGAGQSNDSVTVTDRSVTEMRESITAAVNGYGELRNGQGVTVR 540

Query:   535 RMLALSTFSGMPQDICILAEDLMVSLIILPFHKRQLEDGTLDEGHPGFRYVNRKLLRNAT 594
             RMLALSTF  M  D+C LA++LMVS+IILPFHKR   DGTLD GH GFR+VNRK+L+NA 
Sbjct:   541 RMLALSTFVTMAHDVCGLADELMVSIIILPFHKRLNPDGTLDAGHAGFRHVNRKILKNAP 600

Query:   595 CSVGILVDRGFGSIENISRSQAASLNVAVIFIGGKDDREALAYASRVARHPAVKLTVIRF 654
             CSVGILVDR FG  E   R   AS+ +A+IFIGG+DDREALA+A++VARHPAVKL VIRF
Sbjct:   601 CSVGILVDRSFGQTEEAWRP-GASMGIAIIFIGGRDDREALAFAAQVARHPAVKLKVIRF 659

Query:   655 LLD-NSENPQRRAATY-KDNTAELEEEMKIDDECFAEFYERQVAEG-HVAYAEKHLANSS 711
             L D +S+N Q+R++   + +  + EEEMK+DDECFAEFYER +A G  V+Y EKHL NSS
Sbjct:   660 LEDKSSQNAQKRSSILNRASVVDQEEEMKLDDECFAEFYERYIAGGGRVSYMEKHLTNSS 719

Query:   712 ETFATLRSLEGQYALIIVGRGE-RANSILTVGMNDWQQCPELGPIGDVLSGSDFLVRTSV 770
             ETF  L+SL+G+Y L+IVGRG  RA+S LT G+NDWQQCPELGPIGDVLSGSDF   TS+
Sbjct:   720 ETFTALKSLDGEYGLVIVGRGGGRASSGLTTGLNDWQQCPELGPIGDVLSGSDFSHNTSM 779

Query:   771 LIIKQHDFKGELDGLDEDFSVM 792
             LII+Q   +G+L+GL +DF+++
Sbjct:   780 LIIQQQRTRGQLEGLHDDFTIL 801

GO:0006812 "cation transport" evidence=IEA;IC

GO:0015299 "solute:hydrogen antiporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005451 "monovalent cation:hydrogen antiporter activity" evidence=NAS

GO:0016020 "membrane" evidence=IDA

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

TAIR|locus:2054152 CHX15 "cation/hydrogen exchanger 15" [Arabidopsis thaliana (taxid:3702)]

 Score = 1038 (370.5 bits), Expect = 7.5e-105, P = 7.5e-105
 Identities = 244/763 (31%), Positives = 409/763 (53%)

Query:    31 IVGLLLAYVLTNLAHHLLKPMHQPRITSDIVIGLFLG------NIQPIRNGFELEMIQTL 84
             ++ L L  V+T     +LKP  QPR+ S+I+ G+ LG      + +     F    +  L
Sbjct:    41 VLQLTLVVVVTRFFVFILKPFRQPRVISEILGGIVLGPSVLGRSTKFAHTIFPQRSVMVL 100

Query:    85 NYIVEFGMICYMFVLGLEMDPYVIFKPPTRDAIVAYGGMLSTFILGCSLTPFLHYSTHR- 143
               +   G++ ++F++G+EMD  V+ K   R   +A GGM+  F++G + +  +H S    
Sbjct:   101 ETMANVGLLYFLFLVGVEMDIMVVRKTGKRALTIAIGGMVLPFLIGAAFSFSMHRSEDHL 160

Query:   144 -KIVVAITLSFTLAGSGSHILTRVITNLKIGKSDIGKLGMAAGIHSDMITMLIICIGAVF 202
              +    + L   L+ +   +L R++  LK+  ++IG++ M+A + +DM   +++ +    
Sbjct:   161 GQGTYILFLGVALSVTAFPVLARILAELKLINTEIGRISMSAALVNDMFAWILLALA--I 218

Query:   203 VLPQGNNTQEQIQSAIKMSASLIFQSVFAAKVSPVFMNWINNENPEGKAMKGTHLVLSLA 262
              L + + T     S   M +S +F +V    V P    WI  + PEG+     H+ L L 
Sbjct:   219 ALAESDKTS--FASLWVMISSAVFIAVCVFVVRPGIA-WIIRKTPEGENFSEFHICLILT 275

Query:   263 FMVAVCSCSPFYGYSPILSAFMAGIFFPSEGRMSKWTVGKVNYLLSTLYYPIFFFWMGFH 322
              ++     +   G   +  AF+ G+  P+ G +    + K+   +S L  P+FF   G  
Sbjct:   276 GVMISGFITDAIGTHSVFGAFVFGLVIPN-GPLGLTLIEKLEDFVSGLLLPLFFAISGLK 334

Query:   323 AKLFTFEADTLGTWGRFFFLIVISTAGKVVGTVICGLMLGFHWPESVSLGLLLSAKGHFY 382
               +   +     TW   F +I ++ AGKV+GTVI     G    E ++LGLLL+ KG   
Sbjct:   335 TNIAAIQGPA--TWLTLFLVIFLACAGKVIGTVIVAFFHGMPVREGITLGLLLNTKGLVE 392

Query:   383 IFLAIMGAVHNYITHTTAASLVIM-IFFTIVHTPFVVQNIIGRARKHAPTKRMALQWLDP 441
             + +  +G     +   T A++V++ +  T V TP +V  +    +K    KR  +Q   P
Sbjct:   393 MIVLNVGKDQKVLDDETFATMVLVALVMTGVITP-IVTILYKPVKKSVSYKRRTIQQTKP 451

Query:   442 SNQLQILLCLHGSQNITSTLNFLEISRGTANPGVAVYVTDMIELTDQIAATLVQNEGIDT 501
              ++L++L+C+H  +N+ + +N LE S  T    + +YV  ++ELT + +A L+ +    +
Sbjct:   452 DSELRVLVCVHTPRNVPTIINLLEASHPTKRSPICIYVLHLVELTGRASAMLIVHNTRKS 511

Query:   502 VTVTDKAVMEMREEITTAVQSYVDENGGGITLKRMLALSTFSGMPQDICILAEDLMVSLI 561
                         + I  A ++Y +++   + ++ + A+S +S M +D+C LAED  VS I
Sbjct:   512 GRPALNRTQAQSDHIINAFENY-EQHAAFVAVQPLTAISPYSTMHEDVCSLAEDKRVSFI 570

Query:   562 ILPFHKRQLEDGTLDEGHPGFRYVNRKLLRNATCSVGILVDRGFGSIENISRSQAASLNV 621
             I+PFHK+Q  DG ++  +P +R VN+ LL N+ CSVGILVDRG      ++ S   SL V
Sbjct:   571 IIPFHKQQTVDGGMESTNPAYRLVNQNLLENSPCSVGILVDRGLNGATRLN-SNTVSLQV 629

Query:   622 AVIFIGGKDDREALAYASRVARHPAVKLTVIRFLLDNSENPQRRAATYKDNTAELE---- 677
             AV+F GG DDREALAYA R+A+HP + LTV+RF+ D  E     A+T   N ++L+    
Sbjct:   630 AVLFFGGPDDREALAYAWRMAQHPGITLTVLRFIHDEDEADT--ASTRATNDSDLKIPKM 687

Query:   678 ---EEMKIDDECFAEFYERQVAEGH-VAYAEKHLANSSETFATLRSLEGQYALIIVGRGE 733
                ++ ++DD+ +   +  + AE   + Y EK ++N  ET A +RS++  + L IVGRGE
Sbjct:   688 DHRKQRQLDDD-YINLFRAENAEYESIVYIEKLVSNGEETVAAVRSMDSSHDLFIVGRGE 746

Query:   734 RANSILTVGMNDWQQCPELGPIGDVLSGSDFLVRTSVLIIKQH 776
               +S LT G+ DW +CPELG IGD+L+ SDF    SVL+++Q+
Sbjct:   747 GMSSPLTAGLTDWSECPELGAIGDLLASSDFAATVSVLVVQQY 789

GO:0006812 "cation transport" evidence=IEA;IC

GO:0009507 "chloroplast" evidence=ISM

GO:0015299 "solute:hydrogen antiporter activity" evidence=IEA

GO:0015385 "sodium:hydrogen antiporter activity" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0035725 "sodium ion transmembrane transport" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005451 "monovalent cation:hydrogen antiporter activity" evidence=NAS

GO:0006885 "regulation of pH" evidence=IMP

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

TAIR|locus:2090462 CHX19 "cation/H+ exchanger 19" [Arabidopsis thaliana (taxid:3702)]

 Score = 860 (307.8 bits), Expect = 5.4e-86, P = 5.4e-86
 Identities = 229/762 (30%), Positives = 401/762 (52%)

Query:    31 IVGLLLAYVLTNLAHHLLKPMHQPRITSDIVIGLFLGNIQPIRNGFELEMI------QTL 84
             I+ ++L  V T L  + LKP+ QPR+ ++I+ G+ LG     R+   L+ I        L
Sbjct:    36 ILQIVLVVVFTRLLAYFLKPLKQPRVIAEIIGGILLGPSALGRSKAYLDTIFPKKSLTVL 95

Query:    85 NYIVEFGMICYMFVLGLEMDPYVIFKPPTRDAIVAYGGMLSTFILGCSLTPFLHYSTHRK 144
             + +   G++ ++F++GLE+D   I K   +  ++A  G+   FI+G   T F+  +T  K
Sbjct:    96 DTLANIGLLFFLFLVGLELDFAAIKKTGKKSLLIAIAGISLPFIVGVG-TSFVLSATISK 154

Query:   145 IV----VAITLSFTLAGSGSHILTRVITNLKIGKSDIGKLGM-AAGIHSDMITMLIICIG 199
              V      + +   L+ +   +L R++  LK+  +DIG++ M AAG++ D+   +++ + 
Sbjct:   155 GVDQLPFIVFMGVALSITAFPVLARILAELKLLTTDIGRMAMSAAGVN-DVAAWILLAL- 212

Query:   200 AVFVLPQGNNTQEQIQSAIKMSASLIFQSVFAAKVSPVFMNWINNENPEGKAMKGTHLVL 259
             A+ +   G +    +   +  +  +IF +V A K  P+ + ++    PEG+ +K  ++ +
Sbjct:   213 AIALSGDGTSPLVSVWVLLCGTGFVIF-AVVAIK--PL-LAYMARRCPEGEPVKELYVCV 268

Query:   260 SLAFMVAVCSCSPFYGYSPILSAFMAGIFFPSEGRMSKWTVGKVNYLLSTLYYPIFFFWM 319
             +L  ++A    +   G   +  AF+ GI  P EG   +    K+  L+S L  P++F   
Sbjct:   269 TLTVVLAASFVTDTIGIHALFGAFVVGIVAPKEGPFCRILTEKIEDLVSGLLLPLYFAAS 328

Query:   320 GFHAKLFTFEADTLGTWGRFFFLIVISTAGKVVGTVICGLMLGFHWPESVSLGLLLSAKG 379
             G    + T       +WG    +I+ +  GK+VGTV   ++    + E+V+LG L++ KG
Sbjct:   329 GLKTDVTTIRGAQ--SWGLLVLVILTTCFGKIVGTVGSSMLCKVPFREAVTLGFLMNTKG 386

Query:   380 HFYIFLAIMGAVHNYITHTTAASLVIM-IFFTIVHTPFVVQNIIGRARKHAPTKRMALQW 438
                + +  +G     +     A LV+M +F T + TP +V  I   ARK AP K   +Q 
Sbjct:   387 LVELIVLNIGKDRKVLNDQAFAILVLMALFTTFITTP-IVMLIYKPARKGAPYKHRTIQR 445

Query:   439 LDPSNQLQILLCLHGSQNITSTLNFLEISRGTANPG-VAVYVTDMIELTDQIAA-TLVQN 496
              D  ++L+IL C H ++NI + +N +E SRGT   G + VY   ++EL+++ +A  +V  
Sbjct:   446 KDHDSELRILACFHSTRNIPTLINLIESSRGTGKKGRLCVYAMHLMELSERSSAIAMVHK 505

Query:   497 EGIDTVTVTDKAVMEMREEITTAVQSYVDENGGGITLKRMLALSTFSGMPQDICILAEDL 556
                + + + +K +    +++  A ++Y  ++   + ++ M A+S  S + +DIC  A   
Sbjct:   506 ARNNGLPIWNK-IERSTDQMVIAFEAY--QHLRAVAVRPMTAISGLSSIHEDICTSAHQK 562

Query:   557 MVSLIILPFHKRQLEDGTLDE-GHPGFRYVNRKLLRNATCSVGILVDRGFGSIENISRSQ 615
              V++I+LPFHK Q  DG ++  GH  F  VN+++L+ A CSVGILVDRG G    +  S+
Sbjct:   563 RVAMILLPFHKHQRMDGAMESIGHR-FHEVNQRVLQRAPCSVGILVDRGLGGTSQVVASE 621

Query:   616 AASLNVAVIFIGGKDDREALAYASRVARHPAVKLTVIRFLLDNSENPQRRAATYKDNTAE 675
              A   V + F GG DDREALAY  ++  HP + LTV +F+   +    +R    + +  E
Sbjct:   622 VA-YKVVIPFFGGLDDREALAYGMKMVEHPGITLTVYKFVA--ARGTLKRFEKSEHDEKE 678

Query:   676 LEEEMKIDDECFAEFYERQVAEGHVAYAEKHLANSSETFATLRSLEGQYALIIVGRGERA 735
              ++E + D+E   E          +AY E+ + +  +  ATL+S+  +  L +VGR    
Sbjct:   679 -KKEKETDEEFVRELMNDPRGNESLAYEERVVESKDDIIATLKSMS-KCNLFVVGRNAAV 736

Query:   736 NSILTVGMNDWQQCPELGPIGDVLSGSDFLVRTSVLIIKQHD 777
              S+  V   D   CPELGP+G +LS S+F    SVL+++ +D
Sbjct:   737 ASL--VKSTD---CPELGPVGRLLSSSEFSTTASVLVVQGYD 773

GO:0006812 "cation transport" evidence=IEA;IC

GO:0009507 "chloroplast" evidence=ISM

GO:0015299 "solute:hydrogen antiporter activity" evidence=IEA

GO:0015385 "sodium:hydrogen antiporter activity" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0035725 "sodium ion transmembrane transport" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005451 "monovalent cation:hydrogen antiporter activity" evidence=NAS

GO:0005770 "late endosome" evidence=IDA

GO:0006885 "regulation of pH" evidence=IMP

TAIR|locus:2160457 CHX18 "cation/H+ exchanger 18" [Arabidopsis thaliana (taxid:3702)]

 Score = 848 (303.6 bits), Expect = 1.0e-84, P = 1.0e-84
 Identities = 234/809 (28%), Positives = 414/809 (51%)

Query:     1 MSHNSSKNGTSPAQKCKD--FVG---VTFADGSGKIVGLLLAYVLTNLAHHLLKPMHQPR 55
             M+ NS+K   +P +   +  F G   + FA     I+ +++  VLT +  +LL+P+ QPR
Sbjct:     1 MATNSTKACPAPMKATSNGVFQGDNPIDFALPLA-ILQIVIVIVLTRVLAYLLRPLRQPR 59

Query:    56 ITSDIVIGLFLGNIQPIRNG------FELEMIQTLNYIVEFGMICYMFVLGLEMDPYVIF 109
             + ++++ G+ LG     R+       F  + +  L  +   G++ ++F+ GLE+D   + 
Sbjct:    60 VIAEVIGGIMLGPSLLGRSKAFLDAVFPKKSLTVLETLANLGLLFFLFLAGLEIDTKALR 119

Query:   110 KPPTRDAIVAYGGMLSTFILGCSLTPFLHYSTHRKIVVA----ITLSFTLAGSGSHILTR 165
             +   +   +A  G+   F LG   + F+  +T  K V +    + +   L+ +   +L R
Sbjct:   120 RTGKKALGIALAGITLPFALGIG-SSFVLKATISKGVNSTAFLVFMGVALSITAFPVLAR 178

Query:   166 VITNLKIGKSDIGKLGMAAGIHSDMITMLIICIGAVFVLPQGNNTQEQIQSAIKMSA-SL 224
             ++  LK+  ++IG+L M+A   +D+   +++   A+ +   G+NT   +   + +S  + 
Sbjct:   179 ILAELKLLTTEIGRLAMSAAAVNDVAAWILL---ALAIALSGSNTSPLVSLWVFLSGCAF 235

Query:   225 IFQSVFAAKVSPVFMNWINNENPEGKAMKGTHLVLSLAFMVAVCS-CSPFYGYSPILSAF 283
             +  + F   + P+F  WI+    EG+ ++ T++  +LA +V VC   +   G   +  AF
Sbjct:   236 VIGASFI--IPPIF-RWISRRCHEGEPIEETYICATLA-VVLVCGFITDAIGIHSMFGAF 291

Query:   284 MAGIFFPSEGRMSKWTVGKVNYLLSTLYYPIFFFWMGFHAKLFTFEADTLGTWGRFFFLI 343
             + G+  P EG  +   V KV  L+S L+ P++F   G    + T +     +WG    + 
Sbjct:   292 VVGVLIPKEGPFAGALVEKVEDLVSGLFLPLYFVASGLKTNVATIQGAQ--SWGLLVLVT 349

Query:   344 VISTAGKVVGTVICGLMLGFHWP--ESVSLGLLLSAKGHFYIFLAIMGAVHNYITHTTAA 401
               +  GK++GT+  G+ L F  P  E+++LG L++ KG   + +  +G     +   T A
Sbjct:   350 ATACFGKILGTL--GVSLAFKIPMREAITLGFLMNTKGLVELIVLNIGKDRKVLNDQTFA 407

Query:   402 SLVIM-IFFTIVHTPFV--VQNIIGRARKHAPTKRMALQWLDPSNQLQILLCLHGSQNIT 458
              +V+M +F T + TP V  V     RA+K    K  A++  + + QL+IL C HG+ +I 
Sbjct:   408 IMVLMALFTTFITTPVVMAVYKPARRAKKEGEYKHRAVERENTNTQLRILTCFHGAGSIP 467

Query:   459 STLNFLEISRGTAN-PGVAVYVTDMIELTDQIAATL----VQNEGIDTVTVTDKAVMEMR 513
             S +N LE SRG     G+ VY   + EL+++ +A L    V+  G+       + V    
Sbjct:   468 SMINLLEASRGIEKGEGLCVYALHLRELSERSSAILMVHKVRKNGMPFWN--RRGVNADA 525

Query:   514 EEITTAVQSYVDENGGGITLKRMLALSTFSGMPQDICILAEDLMVSLIILPFHKRQLEDG 573
             +++  A Q++  +    + ++ M A+S+ S + +DIC  A     +++ILPFHK Q  DG
Sbjct:   526 DQVVVAFQAF--QQLSRVNVRPMTAISSMSDIHEDICTTAVRKKAAIVILPFHKHQQLDG 583

Query:   574 TLDEGHPGFRYVNRKLLRNATCSVGILVDRGFGSIENISRSQAASLNVAVIFIGGKDDRE 633
             +L+     +R+VNR++L  A CSVGI VDRG G    +S +Q  S +V V+F GG DDRE
Sbjct:   584 SLETTRGDYRWVNRRVLLQAPCSVGIFVDRGLGGSSQVS-AQDVSYSVVVLFFGGPDDRE 642

Query:   634 ALAYASRVARHPAVKLTVIRFLLDNSENPQRRAATYKDNTAELE--EEMKIDDECFAEFY 691
             ALAY  R+A HP + LTV RF++      +       +N  E +  + +K D+E  +E  
Sbjct:   643 ALAYGLRMAEHPGIVLTVFRFVVSPERVGEIVNVEVSNNNNENQSVKNLKSDEEIMSEIR 702

Query:   692 ERQVAEGHVAYAEKHLANSSETFATLRSLEGQYALIIVGRGERANSILTVGMNDWQQCPE 751
             +    +  V + EK + N++    +      +  L +VGR       L +  N   +CPE
Sbjct:   703 KISSVDESVKFVEKQIENAAVDVRSAIEEVRRSNLFLVGRMPGGEIALAIRENS--ECPE 760

Query:   752 LGPIGDVLSGSDFLVRTSVLIIKQHDFKG 780
             LGP+G +L   +   + SVL+I+Q++  G
Sbjct:   761 LGPVGSLLISPESSTKASVLVIQQYNGTG 789

GO:0006812 "cation transport" evidence=IEA;IC

GO:0009507 "chloroplast" evidence=ISM

GO:0015299 "solute:hydrogen antiporter activity" evidence=IEA

GO:0015385 "sodium:hydrogen antiporter activity" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0035725 "sodium ion transmembrane transport" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005451 "monovalent cation:hydrogen antiporter activity" evidence=NAS

GO:0005770 "late endosome" evidence=IDA

GO:0006885 "regulation of pH" evidence=IMP

TAIR|locus:2031968 CHX23 "cation/H+ exchanger 23" [Arabidopsis thaliana (taxid:3702)]

 Score = 810 (290.2 bits), Expect = 1.1e-80, P = 1.1e-80
 Identities = 222/767 (28%), Positives = 387/767 (50%)

Query:    31 IVGLLLAYVLTNLAHHLLKPMHQPRITSDIVIGLF-----LGNIQ-PIRNGFELEMIQTL 84
             I  L +A +   + ++L +P++ P   + I+ GL      LGN +  I + F       L
Sbjct:    55 ITQLFVANLSYRVLYYLTRPLYLPPFVAQILCGLLFSPSVLGNTRFIIAHVFPYRFTMVL 114

Query:    85 NYIVEFGMICYMFVLGLEMDPYVIFKPPTRDAIVAYGGMLSTFILGCSLTPFLHYSTHRK 144
                    ++  +F+LGL MD  ++     +  I+A+ G+L    +G  L  +L  + H  
Sbjct:   115 ETFANLALVYNIFLLGLGMDLRMVRITELKPVIIAFTGLLVALPVGAFLY-YLPGNGHPD 173

Query:   145 IVVA--ITLSFTLAGSGSHILTRVITNLKIGKSDIGKLGMAAGIHSDMITMLIICIGAVF 202
              +++  +  S  LA +    L R++ +LK+ +SD+G+  M A I +D+ T +++  G   
Sbjct:   174 KIISGCVFWSVALACTNFPDLARILADLKLLRSDMGRTAMCAAIVTDLCTWVLLVFGFAS 233

Query:   203 VLPQGNNTQEQIQSAIKMSASLIFQSVFAAKVSPVFMNWINNENPEGKAMKGTHLVLSLA 262
                 G    + +   I  +A  +   +F  +     + WI  +  +   +  TH+   L 
Sbjct:   234 FSKSGT-WNKMMPFVIITTAIFVLLCIFVIRPG---IAWIFAKTVKAGHVGDTHVWFILG 289

Query:   263 FMVAVCSCSPFYGYSPILSAFMAGIFFPSEGRMSKWTVGKVNYLLSTLYYPIFFFWMGFH 322
              +V     +   G   I  AF+ G+  P +  +      K++  LS +  P+F+   G  
Sbjct:   290 GVVLCGLITDACGVHSITGAFLFGLSIPHDHIIRNMIEEKLHDFLSGILMPLFYIICGLR 349

Query:   323 AKLFTFEADTLGTWGRFFFLIVISTAG--KVVGTVICGLMLGFHWPESVSLGLLLSAKGH 380
             A +       L    +F  ++VI ++   K+V TVI  L +     ++ ++G L++ KG 
Sbjct:   350 ADI----GFMLQFTDKFMMVVVICSSFLVKIVTTVITSLFMHIPMRDAFAIGALMNTKGT 405

Query:   381 FYIFLAIMG----AVHNYI-THTTAASLVIMIFFTIVHTPFVVQNIIGRARKHAPTKRMA 435
               + +   G    A+ + + TH T A LV+    ++V  P +      + +K A  K   
Sbjct:   406 LSLVVLNAGRDTKALDSPMYTHMTIALLVM----SLVVEPLLAFAYKPK-KKLAHYKHRT 460

Query:   436 LQWLDPSNQLQILLCLHGSQNITSTLNFLEISRGTANPGVAVYVTDMIELTDQIAATLV- 494
             +Q +    +L++L C+H   N++   N L++S  T    ++V+   ++ELT +  A+L+ 
Sbjct:   461 VQKIKGETELRVLACVHVLPNVSGITNLLQVSNATKQSPLSVFAIHLVELTGRTTASLLI 520

Query:   495 -QNEGIDTVTVTDKAVMEMREEITTAVQSYVDENGGGITLKRMLALSTFSGMPQDICILA 553
               +E       +D+   E  ++I    ++ ++ N   +T++ + A+S ++ M +DIC+LA
Sbjct:   521 MNDECKPKANFSDRVRAES-DQIAETFEA-MEVNNDAMTVQTITAVSPYATMHEDICVLA 578

Query:   554 EDLMVSLIILPFHKRQLEDGTLDEGHPGFRYVNRKLLRNATCSVGILVDRGFGSIENIS- 612
             ED  V  IILP+HK    DG + EG+     +N+ +L +A CSVGILVDRG   + + S 
Sbjct:   579 EDKRVCFIILPYHKHLTPDGRMGEGNSSHAEINQNVLSHAPCSVGILVDRGMAMVRSESF 638

Query:   613 RSQAASLNVAVIFIGGKDDREALAYASRVARHPAVKLTVIRFLLDNSENPQRRAATYKDN 672
             R ++    VA++F+GG DDREAL+YA R+     +KLTV+RF+      P R A      
Sbjct:   639 RGESMKREVAMLFVGGPDDREALSYAWRMVGQHVIKLTVVRFV------PGREALISSGK 692

Query:   673 TA-ELEEEMKIDDECFAEFYERQVAEGHVAYAEKHLANSSETFATLRSLE--GQYALIIV 729
              A E E E ++DDEC  EF  + + +  V Y EK + +  +T AT+R +E    Y L +V
Sbjct:   693 VAAEYEREKQVDDECIYEFNFKTMNDSSVKYIEKVVNDGQDTIATIREMEDNNSYDLYVV 752

Query:   730 GRGERANSILTVGMNDWQQCPELGPIGDVLSGSDFLVRTSVLIIKQH 776
             GRG  ++S +T G+NDW   PELG IGD L+ S+F +  SVL+I+Q+
Sbjct:   753 GRGYNSDSPVTAGLNDWSSSPELGTIGDTLASSNFTMHASVLVIQQY 799

GO:0005886 "plasma membrane" evidence=ISM

GO:0006812 "cation transport" evidence=IEA;IC

GO:0015299 "solute:hydrogen antiporter activity" evidence=IEA

GO:0015385 "sodium:hydrogen antiporter activity" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0035725 "sodium ion transmembrane transport" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005451 "monovalent cation:hydrogen antiporter activity" evidence=NAS

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0010183 "pollen tube guidance" evidence=IGI

GO:0071805 "potassium ion transmembrane transport" evidence=IDA

TAIR|locus:2084370 CHX20 "cation/H+ exchanger 20" [Arabidopsis thaliana (taxid:3702)]

 Score = 526 (190.2 bits), Expect = 7.1e-76, Sum P(2) = 7.1e-76
 Identities = 164/613 (26%), Positives = 290/613 (47%)

Query:    31 IVGLLLAYVLTNLAHHLLKPMHQPRITSDIVIGLFLGNIQPIRNGFELEMI------QTL 84
             IV   L   ++     L KP+ QP++ ++IV G+ LG     RN   ++ I        L
Sbjct:    30 IVQTALIIAVSRFLAVLFKPLRQPKVIAEIVGGILLGPSALGRNMAYMDRIFPKWSMPIL 89

Query:    85 NYIVEFGMICYMFVLGLEMDPYVIFKPPTRDAIVAYGGMLSTFILGCSLTPFLH---YST 141
               +   G++ ++F++GLE+D   I +   R   +A  G+   FI G  +   +    Y+ 
Sbjct:    90 ESVASIGLLFFLFLVGLELDLSSIRRSGKRAFGIAVAGITLPFIAGVGVAFVIRNTLYTA 149

Query:   142 HRKIVVAITLSF---TLAGSGSHILTRVITNLKIGKSDIGKLGMAAGIHSDMITMLIICI 198
               K   A  L F    L+ +   +L R++  LK+  + IG+  MAA   +D+   +++ +
Sbjct:   150 ADKPGYAEFLVFMGVALSITAFPVLARILAELKLLTTQIGETAMAAAAFNDVAAWILLAL 209

Query:   199 GAVFVLPQGNNTQEQIQSAIKMSASLIFQS--VFAAKVSPVFMNWINNE-NPEGKAMKGT 255
                     G    E+    + +   L      VF   V    M W+    +PE   ++ +
Sbjct:   210 AVALAGNGGEGGGEKKSPLVSLWVLLSGAGFVVFMLVVIRPGMKWVAKRGSPENDVVRES 269

Query:   256 HLVLSLAFMVAVCSCSPFYGYSPILSAFMAGIFFPSEGRMSKWTVGKVNYLLSTLYYPIF 315
             ++ L+LA ++     +   G   I  AF+ G+  P +G   +  + ++   +S L  P++
Sbjct:   270 YVCLTLAGVMVSGFATDLIGIHSIFGAFVFGLTIPKDGEFGQRLIERIEDFVSGLLLPLY 329

Query:   316 FFWMGFHAKLFTFEADTLGTWGRFFFLIVISTAGKVVGTVICGLMLGFHWPESVSLGLLL 375
             F   G    +         +WG    ++V + AGK+VGT +  +M+     E+++LG L+
Sbjct:   330 FATSGLKTDVAKIRGAE--SWGMLGLVVVTACAGKIVGTFVVAVMVKVPAREALTLGFLM 387

Query:   376 SAKGHFYIFLAIMGAVHNYITHTTAASLVIM-IFFTIVHTPFVVQNIIGRAR-KHAPTKR 433
             + KG   + +  +G     +   T A LV+M +F T + TP V+  I   AR  H   K 
Sbjct:   388 NTKGLVELIVLNIGKEKKVLNDETFAILVLMALFTTFITTPTVMA-IYKPARGTHRKLKD 446

Query:   434 MALQWLDPSNQLQILLCLHGSQNITSTLNFLEISRGTANPGVAVYVTDMIELTDQIAATL 493
             ++        +L+IL CLHG  N++S ++ +E  R T    + ++V  ++ELT++ ++ +
Sbjct:   447 LSASQDSTKEELRILACLHGPANVSSLISLVESIRTTKILRLKLFVMHLMELTERSSSII 506

Query:   494 -VQNEGIDTVTVTDKAVM-EMREEITTAVQSYVDENGGGITLKRMLALSTFSGMPQDICI 551
              VQ    + +    +    E    +    ++Y     G + ++ + A+S    M +DIC 
Sbjct:   507 MVQRARKNGLPFVHRYRHGERHSNVIGGFEAY--RQLGRVAVRPITAVSPLPTMHEDICH 564

Query:   552 LAEDLMVSLIILPFHKRQLED-------------GTLDE--GHPGFRYVNRKLLRNATCS 596
             +A+   V++IILPFHKR   D             G + E  GH G+R VN+++L+NA CS
Sbjct:   565 MADTKRVTMIILPFHKRWNADHGHSHHHQDGGGDGNVPENVGH-GWRLVNQRVLKNAPCS 623

Query:   597 VGILVDRGFGSIE 609
             V +LVDRG GSIE
Sbjct:   624 VAVLVDRGLGSIE 636

GO:0006812 "cation transport" evidence=IEA;IC

GO:0009507 "chloroplast" evidence=ISM

GO:0015299 "solute:hydrogen antiporter activity" evidence=IEA

GO:0015385 "sodium:hydrogen antiporter activity" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0035725 "sodium ion transmembrane transport" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005451 "monovalent cation:hydrogen antiporter activity" evidence=NAS

GO:0012505 "endomembrane system" evidence=IDA

GO:0030104 "water homeostasis" evidence=IMP

GO:0030007 "cellular potassium ion homeostasis" evidence=IMP

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0006623 "protein targeting to vacuole" evidence=IMP

GO:0006885 "regulation of pH" evidence=IMP

TAIR|locus:2128484 CHX17 "cation/H+ exchanger 17" [Arabidopsis thaliana (taxid:3702)]

 Score = 764 (274.0 bits), Expect = 8.1e-76, P = 8.1e-76
 Identities = 212/775 (27%), Positives = 382/775 (49%)

Query:    31 IVGLLLAYVLTNLAHHLLKPMHQPRITSDIVIGLFLG------NIQPIRNGFELEMIQTL 84
             I+ + +  +LT L   LL+P+ QPR+ ++IV G+ LG      + + I   F  + +  L
Sbjct:    34 ILQICIVLLLTRLLAFLLRPLRQPRVIAEIVGGILLGPSALGKSTKFINTVFPPKSLTVL 93

Query:    85 NYIVEFGMICYMFVLGLEMDPYVIFKPPTRDAIVAYGGMLSTFILGCSLTPFLHYSTH-- 142
             + +   G+I ++F++GLE+DP  + +   R   +A  G+   F+LG   +  L  S    
Sbjct:    94 DTLANLGLIFFLFLVGLELDPKSLKRTGKRALSIALAGITLPFVLGIGTSFALRSSIADG 153

Query:   143 -RKIVVAITLSFTLAGSGSHILTRVITNLKIGKSDIGKLGMAAGIHSDMITMLIICIGAV 201
               K    + +   L+ +   +L R++  +K+  +DIGK+ ++A   +D+   +++ + AV
Sbjct:   154 ASKAPFLVFMGVALSITAFPVLARILAEIKLLTTDIGKIALSAAAVNDVAAWILLAL-AV 212

Query:   202 FVLPQGNNTQEQIQSAIKMSASLIFQSVFAAKVSPVFMNWINNENPEGKAMKGTHLVLSL 261
              +  +G++    +   +     ++F  +F   V P  +  I    PEG+ +   ++  +L
Sbjct:   213 ALSGEGSSPLTSLWVFLSGCGFVLF-CIFV--VQPG-IKLIAKRCPEGEPVNELYVCCTL 268

Query:   262 AFMVAVCSCSPFYGYSPILSAFMAGIFFPSEGRMSKWTVGKVNYLLSTLYYPIFFFWMGF 321
               ++A    + F G   +  AF+ G+ FP EG  +   V KV  L+S L+ P++F   G 
Sbjct:   269 GIVLAASFVTDFIGIHALFGAFVIGVIFPKEGNFANALVEKVEDLVSGLFLPLYFVSSGL 328

Query:   322 HAKLFTFEADTLGTWGRFFFLIVISTAGKVVGTVICGLMLGFHWPESVSLGLLLSAKGHF 381
                + T +     +WG    +I  +  GK++GTV+  L       +S++LG L++ KG  
Sbjct:   329 KTNVATIQGAQ--SWGLLVLVIFNACFGKIIGTVLVSLYCKVPLDQSLALGFLMNTKGLV 386

Query:   382 YIFLAIMGAVHNYITHTTAASLVIM-IFFTIVHTPFVVQNII-GRARKHAPTKRMALQWL 439
              + +  +G     +     A +V+M IF T + TP V+     G++   A  K   ++  
Sbjct:   387 ELIVLNIGKDRGVLNDQIFAIMVLMAIFTTFMTTPLVLAVYKPGKSLTKADYKNRTVEET 446

Query:   440 DPSNQ-LQILLCLHGSQNITSTLNFLEISRG-TANPGVAVYVTDMIELTDQIAATL---- 493
             + SN+ L ++ C     NI + +N +E SRG      ++VY   ++EL+++ +A L    
Sbjct:   447 NRSNKPLCLMFCFQSIMNIPTIVNLIEASRGINRKENLSVYAMHLMELSERSSAILMAHK 506

Query:   494 VQNEGIDTVTVTDKAVMEMREEITTAVQSYVDENGGGITLKRMLALSTFSGMPQDICILA 553
             V+  G+      DK+           V          ++++ M A+S  + + +DIC  A
Sbjct:   507 VRRNGLPFWN-KDKSENNSSSSDMVVVAFEAFRRLSRVSVRPMTAISPMATIHEDICQSA 565

Query:   554 EDLMVSLIILPFHKRQLEDGTLDEGHPGFRYVNRKLLRNATCSVGILVDRGFGSIENISR 613
             E    +++ILPFHK    D T +     +R++N+K++  + CSV ILVDRG G    ++ 
Sbjct:   566 ERKKTAMVILPFHKHVRLDRTWETTRNDYRWINKKVMEESPCSVAILVDRGLGGTTRVAS 625

Query:   614 SQAASLNVAVIFIGGKDDREALAYASRVARHPAVKLTVIRFLLDNSENPQR-RAATYKDN 672
             S   SL + V+F GG DDREALA+A R+A HP + LTV+RF+  +   P+  R    +D 
Sbjct:   626 SDF-SLTITVLFFGGNDDREALAFAVRMAEHPGISLTVVRFIPSDEFKPENVRIEITEDQ 684

Query:   673 TAELEEEMKIDDECFAEFY----ERQVA------EGHVAYAEKHLANSSETFATLRSLEG 722
                    + ID E   E      E++ +      E H+ Y EK +    E    ++    
Sbjct:   685 LCSGATRL-IDIEAITELKAKIKEKESSRSNSDSESHIIYEEKIVKCYEEVIEVIKEYS- 742

Query:   723 QYALIIVGRGERANSILTVGMNDWQQCPELGPIGDVLSGSDFLVRT-SVLIIKQH 776
             +  L +VG+    +  +  G+N     PELGPIG++L+ S+ +    SVL+++Q+
Sbjct:   743 KSNLFLVGKSPEGS--VASGINVRSDTPELGPIGNLLTESESVSTVASVLVVQQY 795

GO:0005634 "nucleus" evidence=ISM

GO:0006812 "cation transport" evidence=IEA;IC

GO:0015299 "solute:hydrogen antiporter activity" evidence=IEA

GO:0015385 "sodium:hydrogen antiporter activity" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0035725 "sodium ion transmembrane transport" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005451 "monovalent cation:hydrogen antiporter activity" evidence=NAS

GO:0005770 "late endosome" evidence=IDA

GO:0006623 "protein targeting to vacuole" evidence=IMP

GO:0006885 "regulation of pH" evidence=IMP

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0010260 "organ senescence" evidence=RCA

GO:0010583 "response to cyclopentenone" evidence=RCA

TAIR|locus:2024578 CHX16 "cation/H+ exchanger 16" [Arabidopsis thaliana (taxid:3702)]

 Score = 692 (248.7 bits), Expect = 6.7e-75, Sum P(2) = 6.7e-75
 Identities = 206/779 (26%), Positives = 383/779 (49%)

Query:    31 IVGLLLAYVLTNLAHHLLKPMHQPRITSDIVIGLFLG-----NIQPIRNG-FELEMIQTL 84
             I+ + L   +T     LL+PM QPR+ ++I+ G+ LG      I   +N  F    +  L
Sbjct:    43 ILQICLVVAVTRSLAFLLRPMRQPRVVAEIIGGILLGPSALGRITSYKNSIFPARSLTVL 102

Query:    85 NYIVEFGMICYMFVLGLEMDPYVIFKPPTRDAIVAYGGMLSTFILGCSLT-PFLHYST-- 141
             + +   G++ ++F++GLE+D   + +   +   +A  GML  F +G   +  F   S+  
Sbjct:   103 DTLANLGLLLFLFLVGLEIDLTSLRRTGKKAISIAAAGMLLPFGMGIVTSFAFPEASSSG 162

Query:   142 -HRKIV-VAITLSFTLAGSGSHILTRVITNLKIGKSDIGKLGMAAGIHSDMITMLIICIG 199
              + K++   I +   L+ +   +L R++  LK+  +D+G++ M A   +D+   +++ + 
Sbjct:   163 DNSKVLPFIIFMGVALSITAFGVLARILAELKLLTTDLGRISMNAAAINDVAAWVLLAL- 221

Query:   200 AVFVLPQGNNTQEQIQSAIKMSASLIFQSVFAAKVSPVFMNWINNENPEGKAMKGTHLVL 259
             AV +   G+     +   + +S      + F   + P    +I+   PEG+ +   ++ +
Sbjct:   222 AVSL--SGDRNSPLVPLWVLLSGIAFVIACFL--IVPRIFKFISRRCPEGEPIGEMYVCV 277

Query:   260 SLAFMVAVCSCSPFYGYSPILSAFMAGIFFPSEGRMSKWTVGKVNYLLSTLYYPIFFFWM 319
             +L  ++     +   G   I  AF+ G+ FP +G  S   V K+  L+  L  P++F   
Sbjct:   278 ALCAVLLAGFATDAIGIHAIFGAFVMGVLFP-KGHFSDAIVEKIEDLVMGLLLPLYFVMS 336

Query:   320 GFHAKLFTFEADTLGTWGRFFFLIVISTAGKVVGTVICGLMLGFHWPESVSLGLLLSAKG 379
             G    + T +   + +WGR   +IV +  GK+VGTV   L+      ESV LG+L++ KG
Sbjct:   337 GLKTDITTIQG--VKSWGRLALVIVTACFGKIVGTVSVALLCKVRLRESVVLGVLMNTKG 394

Query:   380 HFYIFLAIMGAVHNYITHTTAASLVIM-IFFTIVHTPFVV------------QNIIGRAR 426
                + +  +G     ++  T A +V+M IF T + TP V+             ++  + R
Sbjct:   395 LVELIVLNIGKDRKVLSDQTFAIMVLMAIFTTFITTPIVLALYKPSETTQTHSSVSYKNR 454

Query:   427 KHAPTKRMALQWLDPSNQLQILLCLHGSQNITSTLNFLEISRGT--ANPGVAVYVTDMIE 484
             KH   K    +  +   QL++L+CL  S++I   +  +E +RG+        VYV  + +
Sbjct:   455 KHR-RKIENDEEGEKMQQLKVLVCLQSSKDIDPMMKIMEATRGSNETKERFCVYVMHLTQ 513

Query:   485 LTDQIAAT-LVQNEGIDTVTVTDKAVMEMREEITTAVQSYVDENGGGITLKRMLALSTFS 543
             L+++ ++  +VQ    + +   +K   E    +T A ++        ++++ + A+S  S
Sbjct:   514 LSERPSSIRMVQKVRSNGLPFWNKK-RENSSAVTVAFEA--SSKLSSVSVRSVTAISPLS 570

Query:   544 GMPQDICILAEDLMVSLIILPFHK--RQLEDGTLDEGHPGFRYVNRKLLRNATCSVGILV 601
              + +DIC  A+    + +ILPFHK  R LE    +     ++ +N+++L N+ CSVGILV
Sbjct:   571 TIHEDICSSADSKCTAFVILPFHKQWRSLEK-EFETVRSEYQGINKRVLENSPCSVGILV 629

Query:   602 DRGFGSIENISRSQAASLNVAVIFIGGKDDREALAYASRVARHPAVKLTVIRFLLDNSEN 661
             DRG G   +   S   SL+V V+F GG DDREAL Y  R+A HP V LTV+  ++   E+
Sbjct:   630 DRGLGDNNSPVASSNFSLSVNVLFFGGCDDREALVYGLRMAEHPGVNLTVV--VISGPES 687

Query:   662 PQRRAATYKDNTAELEEEMKIDDECFAEFYERQVAEGHVAYAEKHLANSSETFATLRSLE 721
                  A +    A+      +D++  A   +R     + A  E+   NS+E    +    
Sbjct:   688 -----ARFDRLEAQETSLCSLDEQFLAAIKKR----ANAARFEERTVNSTEEVVEIIRQF 738

Query:   722 GQYALIIVGRGERANSILTVGMNDWQQCPELGPIGDVLSGSDFLVRTSVLIIKQHDFKG 780
              +  +++VG+  +   +  + +   + CPELGP+G+++  ++     SVL+++Q+  KG
Sbjct:   739 YECDILLVGKSSKGPMVSRLPVMKIE-CPELGPVGNLIVSNEISTSVSVLVVQQYTGKG 796

GO:0006812 "cation transport" evidence=IEA;IC

GO:0015299 "solute:hydrogen antiporter activity" evidence=IEA

GO:0015385 "sodium:hydrogen antiporter activity" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0035725 "sodium ion transmembrane transport" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005451 "monovalent cation:hydrogen antiporter activity" evidence=NAS

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0006885 "regulation of pH" evidence=IMP

TAIR|locus:2032805 ATCHX1 [Arabidopsis thaliana (taxid:3702)]

 Score = 674 (242.3 bits), Expect = 2.8e-66, P = 2.8e-66
 Identities = 198/767 (25%), Positives = 374/767 (48%)

Query:    39 VLTNLAHHLLKPMHQPRITSDIVIGLFLGNIQPIRNGFELEMIQ-TLNYIVEFGMI---C 94
             V +   +  LKP  Q    + I+ G+ L  +  IR   E  + + + +Y + F  +    
Sbjct:    31 VFSQFFYLFLKPCGQAGPVAQILAGIVLSLLTIIRKVHEFFLQKDSASYYIFFSFLLRTA 90

Query:    95 YMFVLGLEMDPYVIFKPPTRDAIVAYGGMLSTFILGCSLTPFL-HYSTHRKIVVAITLSF 153
             ++F++GLE+D   + +      ++  G ++ + I+      FL  +   +   +   L+F
Sbjct:    91 FVFLIGLEIDLDFMKRNLKNSIVITLGSLVISGIIWLPFLWFLIRFMQIKGDFLTFYLAF 150

Query:   154 --TLAGSGSHILTRVITNLKIGKSDIGKLGMAAGIHSDMITMLIICIGAVFVLPQGNNTQ 211
               TL+ + + ++ R I + K+  S+IG+L ++ G+  ++  + I  I   F+   G  T 
Sbjct:   151 LITLSNTAAPVVIRSIIDWKLHTSEIGRLAISCGLFIEITNIFIYTIVLSFI--SGTMTA 208

Query:   212 EQIQSAIKMSASLIFQSVFAAKVSPVFMNWINNENPEGKAMKGTHLVLSLAFMVAVCSCS 271
             +    +      +I  + F A       +W+   NP+ K +     +  +  ++ +    
Sbjct:   209 DIFIYSFATGV-IILTNRFLA-------SWLPKRNPKEKYLSKAETLAFIILILIIALTI 260

Query:   272 PFYGYSPILSAFMAGIFFPSEGRMSKWTVGKVNYLLSTLYYPIFFFWMGFHAKLFTFEAD 331
                  +  L  F+ G+ FP EG+  +  + +++Y +     P++F ++GF    F+  + 
Sbjct:   261 ESSNLNSTLFVFIIGLMFPREGKTYRTLIQRLSYPIHEFVLPVYFGYIGFR---FSVNSL 317

Query:   332 TLGTWGRFFFLIVISTAGKVVGTVICGLMLGFHWPESVSLGLLLSAKGHFYIFLAIMGAV 391
             T   +      + +S  GK++G +     L       + L  +LS KGH  + L     +
Sbjct:   318 TKRHYLVLGMTVALSLLGKLLGVLFACSFLKIPKQYWLFLSTMLSVKGHIGLVLLDSNLM 377

Query:   392 HNY----ITHTT-AASLVIMIFFTIVHTPFVVQNIIGRARKHAPTKRMALQWLDPSNQLQ 446
             +      + H    A+LVIM   + V T  ++++   + +  A  K  +L+  D + +L+
Sbjct:   378 YKKWFTPVVHDMFVAALVIMTLLSGVITSLLLRS---QEKSFAHIKT-SLELFDTTEELR 433

Query:   447 ILLCLHGSQNITSTLNFLE----ISRGTANPGVAVYVTDMIELTDQIAATLVQNEGIDTV 502
             +L C++G ++   +++ +      S GT++     Y+  +I L  +    L+ +E  +  
Sbjct:   434 VLTCVYGVRHARGSISLVSALSGFSPGTSSSPFTPYLMHLIPLPKKRKTELLYHELDEDA 493

Query:   503 TVTDKAVMEM--RE--EITTAVQSYVDENGGGITLKRMLALSTFSGMPQDICILAEDLMV 558
               ++    E    E  EI  ++ S+  +    I ++++  ++    M ++IC   EDL V
Sbjct:   494 GNSNGGDDEFGTNEGLEINDSIDSFTRDRK--IMVRQVKLVAPMENMHEEICNATEDLRV 551

Query:   559 SLIILPFHKRQLEDG-TLDEGHPGFRYVNRKLLRNATCSVGILVDRGFGSIENISRSQAA 617
             S++ LPFHK Q  DG T ++G   FR++NRK+L+ A CS+GI VDR       +  S + 
Sbjct:   552 SIVFLPFHKHQRIDGKTTNDGEV-FRHMNRKVLKQAQCSIGIFVDRNITGFHQLHGSDSV 610

Query:   618 SLNVAVIFIGGKDDREALAYASRVARHPAVKLTVIRFLLDNSENPQ--RRAATYKDNTAE 675
               +VA +F GG DDREAL+    +  +  + LTVI+F+ D+S+  +    A T ++N   
Sbjct:   611 Q-HVAALFFGGPDDREALSLCKWLTNNSQIHLTVIQFVADDSKTEKIVGDAVTKENNEVF 669

Query:   676 LE--EEMKIDDEC----FAEFYERQVAEGHVAYAEKHLANSSETFATLRSLEGQYALIIV 729
             LE   E + ++E       EFY R V  G V + EK ++N  +T   LR +   Y+L +V
Sbjct:   670 LEIVSEDQTENETDRIFLEEFYHRFVTTGQVGFIEKRVSNGMQTLTILREIGEMYSLFVV 729

Query:   730 GRGERANSILTVGMNDWQQCPELGPIGDVLSGSDFLVRTSVLIIKQH 776
             G+  R +  +T GMNDW++CPELG +GD L+ S+  V  SVL++++H
Sbjct:   730 GKN-RGDCPMTSGMNDWEECPELGTVGDFLASSNMDVNASVLVVQRH 775

GO:0006812 "cation transport" evidence=IEA;IC

GO:0015299 "solute:hydrogen antiporter activity" evidence=IEA

GO:0015385 "sodium:hydrogen antiporter activity" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0035725 "sodium ion transmembrane transport" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005451 "monovalent cation:hydrogen antiporter activity" evidence=NAS

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

TAIR|locus:2007392 CHX14 "cation/hydrogen exchanger 14" [Arabidopsis thaliana (taxid:3702)]

 Score = 658 (236.7 bits), Expect = 1.4e-64, P = 1.4e-64
 Identities = 206/769 (26%), Positives = 352/769 (45%)

Query:    39 VLTNLAHHLLKPMHQPRITSDIVIGLFLGNIQPIRNGFELEMIQ------TLNYIVEFGM 92
             + + L + LLKP+ Q  I++ ++ G+ LG     ++   ++M        TL  +   G 
Sbjct:    62 ITSRLLYRLLKPLKQGMISAQVLAGIILGPSLFGQSSAYMQMFLPISGKITLQTLSNLGF 121

Query:    93 ICYMFVLGLEMDPYVIFKPPTRDAIVAYGGMLSTFILGCSLTPFLH--YSTHRKIVVAIT 150
               ++F+LGL +D  +I K  ++  ++        F LG     FL   Y+    +V  I+
Sbjct:   122 FIHLFLLGLRIDASIIRKAGSKAILIGTASYALPFSLGNLTVLFLKNTYNLPPDVVHCIS 181

Query:   151 LSFTLAGSGSH-ILTRVITNLKIGKSDIGKLGMAAGIHSDMITMLIICIGAVFVLPQGNN 209
                +L    S  + T V+  L I  SD+G+L     I  +  + ++  +  +F L  G  
Sbjct:   182 TVISLNAMTSFPVTTTVLAELNILNSDLGRLATNCSIVCEAFSWIVALVFRMF-LRDG-- 238

Query:   210 TQEQIQSAIKMSASLIFQSVFAAKVSPVFMNWINNENPEGKAMKGTHLVLSLAFMVAVCS 269
             T   + S + ++A LI    F  +  P  + W+           G      +  ++   S
Sbjct:   239 TLASVWSFVWVTA-LILVIFFVCR--PAII-WLTERRSISIDKAGEIPFFPIIMVLLTIS 294

Query:   270 C-SPFYGYSPILSAFMAGIFFPSEGRMSKWTVGKVNYLLSTLYYPIFFFWMGFHAKLFTF 328
               S   G      AF  G+  P    +      K+    ++L  P F    G     F  
Sbjct:   295 LTSEVLGVHAAFGAFWLGVSLPDGPPLGTGLTTKLEMFATSLMLPCFISISGLQTNFFII 354

Query:   329 EADTLGTWGRFFFLIVISTAG-KVVGTVICGLMLGFHWPESVSLGLLLSAKGHFYIFLAI 387
                 +    +    +++ T G K +GT            ++ SL LL+  +G   I+  +
Sbjct:   355 GESHV----KIIEAVILITYGCKFLGTAAASAYCNIQIGDAFSLALLMCCQGVIEIYTCV 410

Query:   388 MGAVHNYITHTTAASLVIMIFFTIVH-TPFVVQNIIGRARKH-APTKRMALQWLDPSNQL 445
             M      + +T   +L+I+    +   + F+V  +   ++++ + +KR  L     + Q 
Sbjct:   411 MWKDEK-VLNTECFNLLIITLLLVTGISRFLVVCLYDPSKRYRSKSKRTILDTRQRNLQF 469

Query:   446 QILLCLHGSQNITSTLNFLEISRGTANPGVAVYVTDMIELTDQIAATLVQNEGIDTVTVT 505
             ++LLC++  +N+ S +N LE S  +    ++V+   ++EL  +  A LV +  ++ +   
Sbjct:   470 RLLLCVYNVENVPSMVNLLEASYPSRFSPISVFTLHLVELKGRAHAVLVPHHQMNKL--- 526

Query:   506 DKAVMEMREEITTAVQSYVDENGGGITLKRMLALSTFSGMPQDICILAEDLMVSLIILPF 565
             D   ++    I    Q +  +N G +  +   A + FS +  DIC LA D   +LI++PF
Sbjct:   527 DPNTVQSTH-IVNGFQRFEQQNQGTLMAQHFTAAAPFSSINDDICTLALDKKATLIVIPF 585

Query:   566 HKRQLEDGTLDEGHPGFRYVNRKLLRNATCSVGILVDRGFGSIENISRSQAASL---NVA 622
             HK+   DGT+D  +P  R +N  +L  A CSVGI +DRG    E   RS   S    NVA
Sbjct:   586 HKQYAIDGTVDHVNPSIRNINLNVLEKAPCSVGIFIDRG--ETEG-RRSVLMSYTWRNVA 642

Query:   623 VIFIGGKDDREALAYASRVARHPAVKLTVIRFLLDNSENPQRRAATYKDNTAELEEEMKI 682
             VIFI G+DD EALA++ R+A HP V +T+I F    S   Q       D  +EL E   I
Sbjct:   643 VIFIEGRDDAEALAFSMRIAEHPEVSVTMIHFR-HKSSLQQNHVV---DVESELAESYLI 698

Query:   683 DDECFAEFYERQVAEGHVAYAEKHLANSSETFATLRSLEGQYALIIVGRGERANSILTVG 742
             +D  F  F    +++  ++Y E+ + +  ET   + SL   + L++VGR     S +  G
Sbjct:   699 ND--FKNF---AMSKPKISYREEIVRDGVETTQVISSLGDSFDLVVVGRDHDLESSVLYG 753

Query:   743 MNDWQQCPELGPIGDVLSGSDFLVRTSVLIIKQHDFKGELDGLDEDFSV 791
             + DW +CPELG IGD+ + SDF    SVL+I Q +  G+   +D  + +
Sbjct:   754 LTDWSECPELGVIGDMFASSDF--HFSVLVIHQQE--GDSLAMDNSYKL 798

GO:0005886 "plasma membrane" evidence=ISM

GO:0006812 "cation transport" evidence=IEA;IC

GO:0015299 "solute:hydrogen antiporter activity" evidence=IEA

GO:0015385 "sodium:hydrogen antiporter activity" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0035725 "sodium ion transmembrane transport" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005451 "monovalent cation:hydrogen antiporter activity" evidence=NAS

GO:0006814 "sodium ion transport" evidence=RCA

GO:0010351 "lithium ion transport" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8L709	CHX28_ARATH	No assigned EC number	0.5436	0.9886	0.9775	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00091050 cation proton exchanger (791 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	792
PLN03159	832	PLN03159, PLN03159, cation/H(+) antiporter 15; Pro	1e-121
COG0475	397	COG0475, KefB, Kef-type K+ transport systems, memb	1e-20
pfam00999	370	pfam00999, Na_H_Exchanger, Sodium/hydrogen exchang	2e-20
TIGR00932	273	TIGR00932, 2a37, transporter, monovalent cation:pr	6e-08

>gnl|CDD|215608 PLN03159, PLN03159, cation/H(+) antiporter 15; Provisional

 Score =  384 bits (987), Expect = e-121
 Identities = 232/765 (30%), Positives = 399/765 (52%), Gaps = 33/765 (4%)

Query: 31  IVGLLLAYVLTNLAHHLLKPMHQPRITSDIVIGLFLGNIQPIRNG---------FELEMI 81
           I+ L L  V T L   +LKP  QPR+ S+I+ G+ LG   P   G         F L  +
Sbjct: 45  ILQLTLVVVTTRLLVFILKPFRQPRVISEILGGVILG---PSVLGQSEVFANTIFPLRSV 101

Query: 82  QTLNYIVEFGMICYMFVLGLEMDPYVIFKPPTRDAIVAYGGMLSTFILGCSLTPFLHYST 141
             L  +   G++ ++F++G+EMD  VI +   +   +A  GM   F +G + +   H  +
Sbjct: 102 MVLETMANLGLLYFLFLVGVEMDISVIRRTGKKALAIAIAGMALPFCIGLAFSFIFHQVS 161

Query: 142 HR--KIVVAITLSFTLAGSGSHILTRVITNLKIGKSDIGKLGMAAGIHSDMITMLIICIG 199
               +    + L   L+ +   +L R++  +K+  +++G++ M+A + +DM   +++ + 
Sbjct: 162 RNVHQGTFILFLGVALSVTAFPVLARILAEIKLINTELGRIAMSAALVNDMCAWILLALA 221

Query: 200 AVFVLPQGNNTQEQIQSAIKMSASLIFQSVFAAKVSPVFMNWINNENPEGKAMKGTHLVL 259
               L + ++T   + S   + +S+ F       V P  + WI    PEG+     ++ L
Sbjct: 222 --IALAENDSTS--LASLWVLLSSVAFVLFCFYVVRPG-IWWIIRRTPEGETFSEFYICL 276

Query: 260 SLAFMVAVCSCSPFYGYSPILSAFMAGIFFPSEGRMSKWTVGKVNYLLSTLYYPIFFFWM 319
            L  ++     +   G   +  AF+ G+  P+ G +    + K+   +S L  P+FF   
Sbjct: 277 ILTGVMISGFITDAIGTHSVFGAFVFGLVIPN-GPLGVTLIEKLEDFVSGLLLPLFFAIS 335

Query: 320 GFHAKLFTFEADTLGTWGRFFFLIVISTAGKVVGTVICGLMLGFHWPESVSLGLLLSAKG 379
           G    +   +     TWG    +I++++AGK++GT+I        + E ++LG L++ KG
Sbjct: 336 GLKTNVTKIQGPA--TWGLLVLVIIMASAGKIMGTIIIAFFYTMPFREGITLGFLMNTKG 393

Query: 380 HFYIFLAIMGAVHNYITHTTAASLVIM-IFFTIVHTPFVVQNIIGRARKHAPTKRMALQW 438
              + +  +G     +   + A +V++ +  T + TP VV  +   AR+    KR  +Q 
Sbjct: 394 LVEMIVLNVGRDQEVLDDESFAVMVLVAVAMTALITP-VVTVVYRPARRLVGYKRRTIQR 452

Query: 439 LDPSNQLQILLCLHGSQNITSTLNFLEISRGTANPGVAVYVTDMIELTDQIAATLVQNEG 498
                +L++L+C+H  +N+ + +N LE S  T    + +YV  ++ELT + +A L+ +  
Sbjct: 453 SKHDAELRMLVCVHTPRNVPTIINLLEASHPTKRSPICIYVLHLVELTGRASAMLIVHNT 512

Query: 499 IDTVTVTDKAVMEMREEITTAVQSYVDENGGGITLKRMLALSTFSGMPQDICILAEDLMV 558
             +            + I  A ++Y +++ G ++++ + A+S +S M +D+C LAED  V
Sbjct: 513 RKSGRPALNRTQAQSDHIINAFENY-EQHAGCVSVQPLTAISPYSTMHEDVCNLAEDKRV 571

Query: 559 SLIILPFHKRQLEDGTLDEGHPGFRYVNRKLLRNATCSVGILVDRGFGSIENISRSQAAS 618
           SLII+PFHK+Q  DG ++  +P FR VN+ +L NA CSVGILVDRG      ++ +Q  S
Sbjct: 572 SLIIIPFHKQQTVDGGMEATNPAFRGVNQNVLANAPCSVGILVDRGLSGATRLASNQV-S 630

Query: 619 LNVAVIFIGGKDDREALAYASRVARHPAVKLTVIRFLLDNSENPQRRAATYKDN------ 672
            +VAV+F GG DDREALAYA R++ HP + LTV+RF+      P         +      
Sbjct: 631 HHVAVLFFGGPDDREALAYAWRMSEHPGITLTVMRFIPGEDAAPTASQPASSPSDPRIPT 690

Query: 673 -TAELEEEMKIDDECFAEFYERQVAEGHVAYAEKHLANSSETFATLRSLEGQYALIIVGR 731
              + ++E ++D+E   EF  R      + Y EK ++N  ET A +RS++  + L IVGR
Sbjct: 691 VETDGKKERQLDEEYINEFRARNAGNESIVYTEKVVSNGEETVAAIRSMDSAHDLFIVGR 750

Query: 732 GERANSILTVGMNDWQQCPELGPIGDVLSGSDFLVRTSVLIIKQH 776
           G+   S LT G+ DW +CPELG IGD+L+ SDF    SVL+++Q+
Sbjct: 751 GQGMISPLTAGLTDWSECPELGAIGDLLASSDFAATVSVLVVQQY 795

Length = 832

>gnl|CDD|223551 COG0475, KefB, Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]

 Score = 94.6 bits (236), Expect = 1e-20
 Identities = 90/399 (22%), Positives = 161/399 (40%), Gaps = 21/399 (5%)

Query: 34  LLLAYVLTNLAHHLLKPMHQPRITSDIVIGLFLGNIQPIRNGFELEMIQTLNYIVEFGMI 93
           LL+  ++  +   L K +  P +   ++ G+ LG    +      E+I+ L    E G++
Sbjct: 11  LLILLLVAVILGPLFKRLGLPPVLGYLLAGIILGPWGLLLIIESSEIIELLA---ELGVV 67

Query: 94  CYMFVLGLEMDPYVIFKPPTRDA-IVAYGGMLSTFILGCSL-TPFLHYSTHRKIVVAITL 151
             +F++GLE D   + K        VA  G+ + F+LG  L    L  S     + A+ L
Sbjct: 68  FLLFLIGLEFDLERLKKVGRSVGLGVAQVGLTAPFLLGLLLLLGILGLSL----IAALFL 123

Query: 152 SFTLAGSGSHILTRVITNLKIGKSDIGKLGMAAGIHSDMITMLIICIGAVFVLPQGNNTQ 211
              LA S + I+ +++  L + K+  G+L + A +  D+  +L++ I          +  
Sbjct: 124 GAALALSSTAIVLKILMELGLLKTREGQLILGALVFDDIAAILLLAIVPALAGGGSGSVG 183

Query: 212 EQIQSAIKMSASLIFQSVFAAKVSPVFMNWINNENPEGKAMKGTHLVLSLAFMVAVCSCS 271
             +   + + A L    +    + P     +               VL L    A    +
Sbjct: 184 FILGLLLAILAFLALLLLLGRYLLPPLFRRVAKTESSE---LFILFVLLLVLGAAY--LA 238

Query: 272 PFYGYSPILSAFMAGIFFP-SEGRMSKWTVGKVNYLLSTLYYPIFFFWMGFHAKLFTFEA 330
              G S IL AF+AG+    SE R  +    K+      L+ P+FF  +G    L     
Sbjct: 239 ELLGLSMILGAFLAGLLLSESEYRKHE-LEEKIEPFGDGLFIPLFFISVGMSLDLGVL-- 295

Query: 331 DTLGTWGRFFFLIVISTAGKVVGTVICGLMLGFHWPESVSLGLLLSAKGHFYIFLAIMGA 390
             L        L+ ++  GK++G  +   +LGF    ++ +GLLL   G F   LA +  
Sbjct: 296 --LENLLLILLLVALAILGKILGAYLAARLLGFSKRLALGIGLLLRQGGEFAFVLAGIAL 353

Query: 391 VHNYITHTTAASLVIMIFFTIVHTPFVVQNIIGRARKHA 429
               I+     ++VI+   T    P +   ++ R  K +
Sbjct: 354 GSA-ISEALLTAVVILSMITTPILPLLTPILLKRLLKKS 391

Length = 397

>gnl|CDD|216235 pfam00999, Na_H_Exchanger, Sodium/hydrogen exchanger family

 Score = 93.8 bits (234), Expect = 2e-20
 Identities = 80/395 (20%), Positives = 154/395 (38%), Gaps = 34/395 (8%)

Query: 31  IVGLLLAYVLTNLAHHLLKPMHQPRITSDIVIGLFLGNI--QPIRNGFELEMIQTLNYIV 88
           ++ LLLA +   LA  L      P +   I+ G+ LG      +    +LE++       
Sbjct: 2   VLLLLLALLAGLLARRL----GLPPVVGLILAGILLGPSGLGLVEPDLDLEVL------A 51

Query: 89  EFGMICYMFVLGLEMDPYVIFKPPTRDAIVAYG--GMLSTFILGCSL--TPFLHYSTHRK 144
           E G+   +F+ GLE+D   + K     +I+     G+L  F+LG  L     L       
Sbjct: 52  ELGLPLLLFLAGLELDLRELRK--NGKSILLLALLGVLIPFLLGLLLALLGGLGIPLLEA 109

Query: 145 IVVAITLSFTLAGSGSHILTRVITNLKIGKSDIGKLGMAAGIHSDMITMLIICIGAVFVL 204
           ++    LS T       ++  ++       + +G L +   + +D + ++++ +      
Sbjct: 110 LLFGAALSATSPV----VVLAILKERGRLNTRLGTLILGESVLNDAVAVVLLAVLLALAG 165

Query: 205 PQGNNTQEQIQSAIKMSASLIFQSVFAAKVSPVFMNWINNENPEGKAMKGTHLVLSLAFM 264
             G +    +   + +   +    +    V    +  I      G       LVL+LA +
Sbjct: 166 VGGLSD---LGLLLLIFLVVALGGLLLGLVFGWLLRLITR-FTSGDRELEVLLVLALALL 221

Query: 265 VAVCSCSPFYGYSPILSAFMAGIFFPSEGRMSKWTVGKVNYLLSTLYYPIFFFWMGFHAK 324
            A+ +     G S IL AF+AG+   S    +     K+      L+ P+FF  +G    
Sbjct: 222 AALLAEL--LGLSGILGAFLAGLVL-SNYAFANELSEKLEPFGYGLFLPLFFVSVG---- 274

Query: 325 LFTFEADTLGTWGRFFFLIVIS-TAGKVVGTVICGLMLGFHWPESVSLGLLLSAKGHFYI 383
           L    +  L +      L++++   GK++G  +   +LG    E++ +G     +G   +
Sbjct: 275 LSLDLSSLLLSLLLLVLLLLVAILLGKLLGVFLLARLLGLSLREALIVGFGGLQRGAVSL 334

Query: 384 FLAIMGAVHNYITHTTAASLVIMIFFTIVHTPFVV 418
            LA +G     I       LV ++  T +  P + 
Sbjct: 335 ALAAIGLQLGLIDRELYTLLVAVVLLTTLLKPLLK 369

Na/H antiporters are key transporters in maintaining the pH of actively metabolising cells. The molecular mechanisms of antiport are unclear. These antiporters contain 10-12 transmembrane regions (M) at the amino-terminus and a large cytoplasmic region at the carboxyl terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family. Length = 370

>gnl|CDD|233195 TIGR00932, 2a37, transporter, monovalent cation:proton antiporter-2 (CPA2) family

 Score = 54.6 bits (132), Expect = 6e-08
 Identities = 47/257 (18%), Positives = 95/257 (36%), Gaps = 22/257 (8%)

Query: 39  VLTNLAHHLLKPMHQPRITSDIVIGLFLGNIQPIRNGFELEMIQT---LNYIVEFGMICY 95
           +   LA  L + +  P +   ++ G+ +G          L +I     +N++ EFG+I  
Sbjct: 2   LAAVLAVPLSRRLGIPSVLGYLLAGVLIGP-------SGLGLISNVEGVNHLAEFGVILL 54

Query: 96  MFVLGLEMDPYVIFKPPTRDAIVAYGGMLSTFILGCSLTPFLHYSTHRKIVVAITLSFTL 155
           MF++GLE+D   ++K           G+L   + G  L   L +     +  A+ +   L
Sbjct: 55  MFLIGLELDLERLWK---LRKAAFGVGVLQVLVPGVLLGLLLGHLLGLALGAAVVIGIIL 111

Query: 156 AGSGSHILTRVITNLKIGKSDIGKLGMAAGIHSDMITMLIICIGAVFVLPQGNNTQEQIQ 215
           A S + ++ +V+    + K+  G+  +   +  D+  + ++ +  +      +     + 
Sbjct: 112 ALSSTAVVVQVLKERGLLKTPFGQTVLGILLFQDIAVVPLLALLPLL-ATSASTEHVALA 170

Query: 216 SAIKMSASLIFQSVFAAK--VSPVFMNWINNENPEGKAMKGTHLVLSLAFMVAVCSCSPF 273
             +          V   +  + PV          E           SL  M      +  
Sbjct: 171 LLLLKVFLAFLLLVLLGRWLLRPVLRLTAELRPSELFTA------GSLLLMFGSAYFADL 224

Query: 274 YGYSPILSAFMAGIFFP 290
            G S  L AF+AG+   
Sbjct: 225 LGLSMALGAFLAGVVLS 241

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 273

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	792
PLN03159	832	cation/H(+) antiporter 15; Provisional	100.0
KOG1650	769	consensus Predicted K+/H+-antiporter [Inorganic io	100.0
PRK03562	621	glutathione-regulated potassium-efflux system prot	100.0
PRK10669	558	putative cation:proton antiport protein; Provision	100.0
PRK03659	601	glutathione-regulated potassium-efflux system prot	100.0
COG0475	397	KefB Kef-type K+ transport systems, membrane compo	100.0
PRK05326	562	potassium/proton antiporter; Reviewed	100.0
PF00999	380	Na_H_Exchanger: Sodium/hydrogen exchanger family;	100.0
TIGR00932	273	2a37 transporter, monovalent cation:proton antipor	100.0
COG4651	408	RosB Kef-type K+ transport system, predicted NAD-b	100.0
TIGR00831	525	a_cpa1 Na+/H+ antiporter, bacterial form. This mod	99.97
TIGR00844	810	c_cpa1 na(+)/h(+) antiporter. This model is specif	99.96
COG0025	429	NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorg	99.95
TIGR00840	559	b_cpa1 sodium/hydrogen exchanger 3. This model is	99.93
COG3263	574	NhaP-type Na+/H+ and K+/H+ antiporters with a uniq	99.91
KOG1965	575	consensus Sodium/hydrogen exchanger protein [Inorg	99.77
KOG4505	467	consensus Na+/H+ antiporter [Inorganic ion transpo	99.75
PRK14853	423	nhaA pH-dependent sodium/proton antiporter; Provis	99.75
TIGR00773	373	NhaA Na+/H+ antiporter NhaA. These proteins are me	99.52
PRK14856	438	nhaA pH-dependent sodium/proton antiporter; Provis	99.29
PRK11175	305	universal stress protein UspE; Provisional	99.27
KOG1966	670	consensus Sodium/hydrogen exchanger protein [Inorg	99.22
PRK09560	389	nhaA pH-dependent sodium/proton antiporter; Review	99.2
PRK14855	423	nhaA pH-dependent sodium/proton antiporter; Provis	99.18
PRK14854	383	nhaA pH-dependent sodium/proton antiporter; Provis	99.14
PRK09561	388	nhaA pH-dependent sodium/proton antiporter; Review	99.13
cd01988	132	Na_H_Antiporter_C The C-terminal domain of a subfa	99.11
PF06965	378	Na_H_antiport_1: Na+/H+ antiporter 1; InterPro: IP	99.02
COG3004	390	NhaA Na+/H+ antiporter [Inorganic ion transport an	98.84
cd01989	146	STK_N The N-terminal domain of Eukaryotic Serine T	98.28
cd01987	124	USP_OKCHK USP domain is located between the N-term	98.23
PF00582	140	Usp: Universal stress protein family; InterPro: IP	98.13
PRK12460	312	2-keto-3-deoxygluconate permease; Provisional	98.11
PRK15456	142	universal stress protein UspG; Provisional	97.92
cd01988	132	Na_H_Antiporter_C The C-terminal domain of a subfa	97.9
PRK15118	144	universal stress global response regulator UspA; P	97.89
PRK15005	144	universal stress protein F; Provisional	97.88
cd00293	130	USP_Like Usp: Universal stress protein family. The	97.85
PF05684	378	DUF819: Protein of unknown function (DUF819); Inte	97.68
PRK09982	142	universal stress protein UspD; Provisional	97.68
PF00582	140	Usp: Universal stress protein family; InterPro: IP	97.67
PRK11175	305	universal stress protein UspE; Provisional	97.66
cd01989	146	STK_N The N-terminal domain of Eukaryotic Serine T	97.59
PRK10116	142	universal stress protein UspC; Provisional	97.56
PF03812	314	KdgT: 2-keto-3-deoxygluconate permease; InterPro:	97.44
TIGR00698	335	conserved hypothetical integral membrane protein.	97.41
COG0385	319	Predicted Na+-dependent transporter [General funct	97.36
cd00293	130	USP_Like Usp: Universal stress protein family. The	97.22
cd01987	124	USP_OKCHK USP domain is located between the N-term	97.19
PRK15005	144	universal stress protein F; Provisional	97.17
PRK10116	142	universal stress protein UspC; Provisional	97.16
TIGR00793	314	kdgT 2-keto-3-deoxygluconate transporter. This fam	96.98
PRK15118	144	universal stress global response regulator UspA; P	96.97
PF03601	305	Cons_hypoth698: Conserved hypothetical protein 698	96.83
PF13593	313	DUF4137: SBF-like CPA transporter family (DUF4137)	96.82
PRK15456	142	universal stress protein UspG; Provisional	96.69
COG3180	352	AbrB Putative ammonia monooxygenase [General funct	96.69
PRK09982	142	universal stress protein UspD; Provisional	96.67
COG0798	342	ACR3 Arsenite efflux pump ACR3 and related permeas	96.59
COG0786	404	GltS Na+/glutamate symporter [Amino acid transport	96.32
COG2855	334	Predicted membrane protein [Function unknown]	96.29
PRK03562	621	glutathione-regulated potassium-efflux system prot	96.18
PF03390	414	2HCT: 2-hydroxycarboxylate transporter family; Int	96.15
COG3493	438	CitS Na+/citrate symporter [Energy production and	96.11
PF03616	368	Glt_symporter: Sodium/glutamate symporter; InterPr	96.09
COG0589	154	UspA Universal stress protein UspA and related nuc	96.07
TIGR00932	273	2a37 transporter, monovalent cation:proton antipor	95.93
PRK12652	357	putative monovalent cation/H+ antiporter subunit E	95.86
TIGR00930	953	2a30 K-Cl cotransporter.	95.82
PRK05274	326	2-keto-3-deoxygluconate permease; Provisional	95.76
PF05145	318	AmoA: Putative ammonia monooxygenase; InterPro: IP	95.74
PRK03659	601	glutathione-regulated potassium-efflux system prot	95.67
PRK10669	558	putative cation:proton antiport protein; Provision	95.55
TIGR00783	347	ccs citrate carrier protein, CCS family. These pro	95.35
TIGR00841	286	bass bile acid transporter. Functionally character	95.16
PRK05326	562	potassium/proton antiporter; Reviewed	95.08
TIGR00832	328	acr3 arsenical-resistance protein. The first prote	95.01
COG0475	397	KefB Kef-type K+ transport systems, membrane compo	94.98
PF03601	305	Cons_hypoth698: Conserved hypothetical protein 698	94.88
COG2855	334	Predicted membrane protein [Function unknown]	94.81
PF03956	191	DUF340: Membrane protein of unknown function (DUF3	94.67
PF06826	169	Asp-Al_Ex: Predicted Permease Membrane Region; Int	94.38
TIGR00210	398	gltS sodium--glutamate symport carrier (gltS).	94.03
PRK03818	552	putative transporter; Validated	93.75
PRK12652	357	putative monovalent cation/H+ antiporter subunit E	93.71
TIGR00844	810	c_cpa1 na(+)/h(+) antiporter. This model is specif	93.66
PLN03159	832	cation/H(+) antiporter 15; Provisional	93.21
TIGR00698	335	conserved hypothetical integral membrane protein.	92.61
PF01758	187	SBF: Sodium Bile acid symporter family; InterPro:	92.54
PF03616	368	Glt_symporter: Sodium/glutamate symporter; InterPr	92.35
COG0589	154	UspA Universal stress protein UspA and related nuc	92.21
TIGR00831	525	a_cpa1 Na+/H+ antiporter, bacterial form. This mod	91.94
TIGR03802	562	Asp_Ala_antiprt aspartate-alanine antiporter. All	91.24
TIGR03802	562	Asp_Ala_antiprt aspartate-alanine antiporter. All	90.47
TIGR01625	154	YidE_YbjL_dupl AspT/YidE/YbjL antiporter duplicati	90.36
TIGR03082	156	Gneg_AbrB_dup membrane protein AbrB duplication. T	90.08
COG0786	404	GltS Na+/glutamate symporter [Amino acid transport	87.76
COG2985	544	Predicted permease [General function prediction on	87.32
TIGR03082	156	Gneg_AbrB_dup membrane protein AbrB duplication. T	87.13
PRK10490	895	sensor protein KdpD; Provisional	86.32
TIGR00210	398	gltS sodium--glutamate symport carrier (gltS).	86.19
TIGR00808	254	malonate_madM malonate transporter, MadM subunit.	86.01
COG1346	230	LrgB Putative effector of murein hydrolase [Cell e	85.98
PRK04972	558	putative transporter; Provisional	85.92
PRK12460	312	2-keto-3-deoxygluconate permease; Provisional	85.81
TIGR00946	321	2a69 he Auxin Efflux Carrier (AEC) Family.	85.02
PRK04288	232	antiholin-like protein LrgB; Provisional	81.89
PRK04972	558	putative transporter; Provisional	81.69
PRK03818	552	putative transporter; Validated	80.15

>PLN03159 cation/H(+) antiporter 15; Provisional

Probab=100.00  E-value=3.9e-150  Score=1339.95  Aligned_cols=757  Identities=30%  Similarity=0.515  Sum_probs=669.7

Q ss_pred             CCCCCCCCCCccCCCccc-ccccchHHHHHHHHHHHHHHHHHHHhHcccCCChhHHHHHHHhhccCccccc------ccc
Q 038269            4 NSSKNGTSPAQKCKDFVG-VTFADGSGKIVGLLLAYVLTNLAHHLLKPMHQPRITSDIVIGLFLGNIQPIR------NGF   76 (792)
Q Consensus         4 ~~~~~g~~~~~~~~~~~~-~~~~~lp~~l~~i~lil~~~~~~~~l~~rl~~P~iv~~IlaGillGp~~~~~------~lf   76 (792)
                      +.+|+|.|.      |-| ++| ++|++++|+++++++++++++++||+|||++++||++|+++||+.+..      .+|
T Consensus        24 ~~~s~g~~~------g~~pl~~-~l~~~llql~lil~~a~l~~~ll~rl~~P~ivgeIlaGIlLGPs~lg~i~~~~~~~f   96 (832)
T PLN03159         24 MITTNGIWQ------GDNPLDF-SLPLFILQLTLVVVTTRLLVFILKPFRQPRVISEILGGVILGPSVLGQSEVFANTIF   96 (832)
T ss_pred             CccCCcccc------cCCcccc-hHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHhcCHhhhCcChhhhhhcC
Confidence            566777763      445 789 999999999999999999999999999999999999999999976442      346


Q ss_pred             ccccHHHHHHHHHHHHHHHHHHHhhccChhhhhcCCcccchHhHHHHHHHHHHHHHHHHHhhccc--chhHHHHHHHHHH
Q 038269           77 ELEMIQTLNYIVEFGMICYMFVLGLEMDPYVIFKPPTRDAIVAYGGMLSTFILGCSLTPFLHYST--HRKIVVAITLSFT  154 (792)
Q Consensus        77 ~~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~l~p~~~~~~~~~~l~~~~--~~~~~~al~lg~~  154 (792)
                      |.++.+.++.++++|++++||++|+|+|++.+||++|+++.+|+.++++|+++|+++++++++..  .....+++++|++
T Consensus        97 p~~~~~~l~~la~lGlillmFliGLE~Dl~~lr~~~k~a~~ia~~~~ilpf~lg~~~~~~l~~~~~~~~~~~~~l~~g~a  176 (832)
T PLN03159         97 PLRSVMVLETMANLGLLYFLFLVGVEMDISVIRRTGKKALAIAIAGMALPFCIGLAFSFIFHQVSRNVHQGTFILFLGVA  176 (832)
T ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHH
Confidence            66667789999999999999999999999999999999999999999999999988877664321  1223456899999


Q ss_pred             HhhccHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHHHHHHHHHH
Q 038269          155 LAGSGSHILTRVITNLKIGKSDIGKLGMAAGIHSDMITMLIICIGAVFVLPQGNNTQEQIQSAIKMSASLIFQSVFAAKV  234 (792)
Q Consensus       155 ls~Ts~~vv~~iL~el~ll~s~~g~l~l~~a~i~Di~~~~ll~i~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~v  234 (792)
                      +|.||+|+++++|+|+|+++++.||+++++++++|+++|++++++.++...+...     ...++.++..+++++++.++
T Consensus       177 lS~Ts~pVv~riL~Elkll~s~~GrlaLsaavv~Dl~~~ilLav~~~l~~~~~~~-----~~~l~~~l~~~~f~~~~~~v  251 (832)
T PLN03159        177 LSVTAFPVLARILAEIKLINTELGRIAMSAALVNDMCAWILLALAIALAENDSTS-----LASLWVLLSSVAFVLFCFYV  251 (832)
T ss_pred             HHHhhHHHHHHHHHHcCcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc-----hhHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999887665433211     13456666677788888899


Q ss_pred             hHHHHHHHhhhcCCCCcccchhHHHHHHHHHHHHHHhhhhCchhhHHHHHHhhhcCCCCcchHHHHHHHhHHHHhhhhHH
Q 038269          235 SPVFMNWINNENPEGKAMKGTHLVLSLAFMVAVCSCSPFYGYSPILSAFMAGIFFPSEGRMSKWTVGKVNYLLSTLYYPI  314 (792)
Q Consensus       235 ~r~~~~~i~~~~~~~~~~~e~~~~~il~~~l~~~~~ae~~G~~~~lgafvaGl~l~~~~~~~~~l~~kl~~~~~~~~~Pl  314 (792)
                      +||++.|+.++++++++.++.++.+++++++++++++|.+|+|+++|||++|+++|+ +|+++++.+|+++++.++|+|+
T Consensus       252 ~r~~~~~~~r~~~~~~~~~e~~v~~il~~vl~~a~lae~~Gl~~ilGAFlaGl~lp~-~~~~~~l~ekle~~~~~lflPl  330 (832)
T PLN03159        252 VRPGIWWIIRRTPEGETFSEFYICLILTGVMISGFITDAIGTHSVFGAFVFGLVIPN-GPLGVTLIEKLEDFVSGLLLPL  330 (832)
T ss_pred             HHHHHHHHHHhCcCCCCcccchhHHHHHHHHHHHHHHHHhCccHHHHHHHHhhccCC-cchHHHHHHHHHHHHHHHHHHH
Confidence            999999999999998888999999999999999999999999999999999999997 7899999999999999999999


Q ss_pred             HHHhhcccccccccccccchhHHHHHHHHHHHHhhhHHHHHHHHHhhCCChHHHHHHHHHhhhhhHHHHHHHHHhhcccc
Q 038269          315 FFFWMGFHAKLFTFEADTLGTWGRFFFLIVISTAGKVVGTVICGLMLGFHWPESVSLGLLLSAKGHFYIFLAIMGAVHNY  394 (792)
Q Consensus       315 fF~~~Gl~~d~~~l~~~~~~~~~~~~~li~~~~~~K~l~~~l~~~~~~~~~re~~~lg~~l~~kG~v~l~l~~~~~~~~~  394 (792)
                      ||+++|+++|+..+.  ++..|..+++++++++++|+++++++++++|+|++|++.+|++|++||++++++++++++.|+
T Consensus       331 FFv~vGl~idl~~l~--~~~~~~~~~~liv~a~~gK~~g~~l~a~~~g~~~~eal~lG~lm~~kG~~~Lii~~ig~~~gv  408 (832)
T PLN03159        331 FFAISGLKTNVTKIQ--GPATWGLLVLVIIMASAGKIMGTIIIAFFYTMPFREGITLGFLMNTKGLVEMIVLNVGRDQEV  408 (832)
T ss_pred             HHHHhhheeeHHHhc--CchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhcccHHHHHHHHHHHhcCc
Confidence            999999999997652  344566667778888999999999999999999999999999999999999999999999999


Q ss_pred             cChhhHHHHHHHHHHHHhhhhHHHHHhhhhhcccCcccccccccCCCCCcceEEEEecCCCChhhHHHHHHHhcCCCCCC
Q 038269          395 ITHTTAASLVIMIFFTIVHTPFVVQNIIGRARKHAPTKRMALQWLDPSNQLQILLCLHGSQNITSTLNFLEISRGTANPG  474 (792)
Q Consensus       395 i~~~~~~~lv~~~vl~~~~~~~li~~l~~~~~~~~~~~~r~i~~~~~~~elrILvcv~~~~~~~~li~l~~~~~~~~~sp  474 (792)
                      ++++.|++++++++++|.+++|+++++|+|+||+..|++|++|+.++++|+|+|+|+|++++++++++|++++++++++|
T Consensus       409 i~~~~f~~lVl~avl~T~i~~Plv~~ly~p~rk~~~~~~r~i~~~~~~~elriL~cv~~~~~v~~li~Lle~s~~t~~sp  488 (832)
T PLN03159        409 LDDESFAVMVLVAVAMTALITPVVTVVYRPARRLVGYKRRTIQRSKHDAELRMLVCVHTPRNVPTIINLLEASHPTKRSP  488 (832)
T ss_pred             cCchhhhHHHHHHHHHHHHHHHHHHHHhCHHhhhccccccccccCCCCCceeEEEEeccCCcHHHHHHHHHhcCCCCCCC
Confidence            99999999999999888888889999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceEEEEEEeeecccchhhhhcccCccccccchhhhhhhhHHHHHHHHHhhhccCcceEEEEeEeecCCCChhHHHHHHHh
Q 038269          475 VAVYVTDMIELTDQIAATLVQNEGIDTVTVTDKAVMEMREEITTAVQSYVDENGGGITLKRMLALSTFSGMPQDICILAE  554 (792)
Q Consensus       475 ~~v~~lhLvel~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~~~~v~v~~~t~vs~~~~m~~dI~~~a~  554 (792)
                      +++|+||||||++|++|++++|+..+...........++|+++++|++|++++ ++|+|+++|++|||++||||||++|+
T Consensus       489 ~~vy~lhLveL~~r~~~~l~~h~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~-~~v~v~~~t~vs~~~~mh~dIc~~A~  567 (832)
T PLN03159        489 ICIYVLHLVELTGRASAMLIVHNTRKSGRPALNRTQAQSDHIINAFENYEQHA-GCVSVQPLTAISPYSTMHEDVCNLAE  567 (832)
T ss_pred             ceEEEEEEEeecCCCccceeeeecccccccccccccccccHHHHHHHHHHhhc-CceEEEEEEEEeCcccHHHHHHHHHH
Confidence            99999999999999999999887532211000011234799999999999864 47999999999999999999999999


Q ss_pred             hcCCcEEEecCCCCccCCCccccCCcchhHHHHHHhhhCCCceEEEecCCCCCccccccccccceeEEEEeccCcChHHH
Q 038269          555 DLMVSLIILPFHKRQLEDGTLDEGHPGFRYVNRKLLRNATCSVGILVDRGFGSIENISRSQAASLNVAVIFIGGKDDREA  634 (792)
Q Consensus       555 e~~~~liilp~h~~~~~~g~~~~~~~~~~~~n~~vl~~apCsVgIlVdrg~~~~~~~~~~~~~~~~v~v~f~GG~ddreA  634 (792)
                      ||++++||+||||+|+.||++++++..+|.+|++||++||||||||||||.+...+.. .....+||+++|+||||||||
T Consensus       568 d~~~slIilpfhk~~~~dg~~~~~~~~~r~~n~~VL~~ApCsVgIlVDRg~~~~~~~~-~~~~~~~v~~~F~GG~DDREA  646 (832)
T PLN03159        568 DKRVSLIIIPFHKQQTVDGGMEATNPAFRGVNQNVLANAPCSVGILVDRGLSGATRLA-SNQVSHHVAVLFFGGPDDREA  646 (832)
T ss_pred             hcCCCEEEECCCCccCCCCCccccCchHHHHHHHHHccCCCCEEEEEeCCCCcccccc-ccccceeEEEEecCCcchHHH
Confidence            9999999999999999999999999999999999999999999999999976433222 345678999999999999999


Q ss_pred             HHHHHHHhcCCCeEEEEEEeeecCCCCcccc------ccccc-CCcchhhhhhhhhHHHHHHHHHhhcCCCcEEEEEEec
Q 038269          635 LAYASRVARHPAVKLTVIRFLLDNSENPQRR------AATYK-DNTAELEEEMKIDDECFAEFYERQVAEGHVAYAEKHL  707 (792)
Q Consensus       635 L~~a~rma~~~~v~ltv~r~~~~~~~~~~~~------~~~~~-~~~~~~~~~~~~d~~~l~e~~~~~~~~~~v~y~e~~v  707 (792)
                      |+||+||++||++++||+||++.++..+...      .++.. ....+++.|+++||++++|||.++..+++|.|+||+|
T Consensus       647 La~a~rma~~p~v~lTVirf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~D~~~~~ef~~~~~~~~~v~y~E~~V  726 (832)
T PLN03159        647 LAYAWRMSEHPGITLTVMRFIPGEDAAPTASQPASSPSDPRIPTVETDGKKERQLDEEYINEFRARNAGNESIVYTEKVV  726 (832)
T ss_pred             HHHHHHHhcCCCeEEEEEEEEcccccccccccccccccccccccccccchhHHHHHHHHHHHHHHhcCCCCceEEEEEec
Confidence            9999999999999999999997544322110      01111 1123346788999999999999987778999999999


Q ss_pred             CChHHHHHHHHhhhcCccEEEEecCCCCCcccccCCcccCCCCccchhhhhhhcCCCCCceeEEEEeeec
Q 038269          708 ANSSETFATLRSLEGQYALIIVGRGERANSILTVGMNDWQQCPELGPIGDVLSGSDFLVRTSVLIIKQHD  777 (792)
Q Consensus       708 ~~~~e~~~~i~~~~~~~dL~iVGr~~~~~s~~~~gl~~w~e~~eLG~iGd~las~d~~~~~SvLvvqq~~  777 (792)
                      +|++||+++||+|.++|||+||||+|+.+|++|+||+||+||||||||||+|||+||.+++||||||||+
T Consensus       727 ~~~~e~~~~l~~~~~~ydL~iVGr~~~~~~~~~~gL~~w~e~pELG~iGD~LaS~d~~~~~SVLVvQQ~~  796 (832)
T PLN03159        727 SNGEETVAAIRSMDSAHDLFIVGRGQGMISPLTAGLTDWSECPELGAIGDLLASSDFAATVSVLVVQQYV  796 (832)
T ss_pred             CCHHHHHHHHHHhhccCcEEEEecCCCCCcchhccccccccCCccchhhhHHhcCCCCCceeEEEEEeec
Confidence            9999999999999999999999999988899999999999999999999999999999999999999997

>KOG1650 consensus Predicted K+/H+-antiporter [Inorganic ion transport and metabolism]

Probab=100.00  E-value=8.7e-124  Score=1096.07  Aligned_cols=738  Identities=31%  Similarity=0.497  Sum_probs=659.2

Q ss_pred             ccc-ccccchHHHHHHHHHHHHHHHHHHHhHcccCCChhHHHHHHHhhccCcccc------ccccccccHHHHHHHHHHH
Q 038269           19 FVG-VTFADGSGKIVGLLLAYVLTNLAHHLLKPMHQPRITSDIVIGLFLGNIQPI------RNGFELEMIQTLNYIVEFG   91 (792)
Q Consensus        19 ~~~-~~~~~lp~~l~~i~lil~~~~~~~~l~~rl~~P~iv~~IlaGillGp~~~~------~~lf~~~~~~~l~~l~~lg   91 (792)
                      |.| ++| ++|++++|+.+++++++++++++||+|||++++++++||++||+.+.      +.+||.++...+++++.+|
T Consensus        13 ~~~~~~~-~lpl~~lq~~~i~~~~~~~~~~l~pl~qp~~~s~il~Gi~lgps~~g~~~~~~~~~f~~~s~~~l~~~~~lg   91 (769)
T KOG1650|consen   13 GVNPLKY-ALPLLLLQIILIIVLSRLLHILLKPLGQPRVISEILAGIILGPSLLGRIPSYMNTIFPKSSMIVLELLANLG   91 (769)
T ss_pred             CCCcccc-ccHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHhcchHhhccChhhhhcccccchHHHHHHHHHHH
Confidence            444 899 99999999999999999999999999999999999999999987543      2467878899999999999


Q ss_pred             HHHHHHHHhhccChhhhhcCCcccchHhHHHHHHHHHHHHHHHHHhhcc---c--c--hhHHHHHHHHHHHhhccHHHHH
Q 038269           92 MICYMFVLGLEMDPYVIFKPPTRDAIVAYGGMLSTFILGCSLTPFLHYS---T--H--RKIVVAITLSFTLAGSGSHILT  164 (792)
Q Consensus        92 l~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~l~p~~~~~~~~~~l~~~---~--~--~~~~~al~lg~~ls~Ts~~vv~  164 (792)
                      +.+++|+.|+|+|.+.+||.+|++..+|+.++++|+..|..+...+...   .  .  .....-.++..++|.|+||+++
T Consensus        92 ~~~f~Fl~gl~~d~~~i~~~~kka~~I~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~tsfpv~~  171 (769)
T KOG1650|consen   92 FLFFLFLMGLEIDLRVIRRTGKKAIVIAIASVVLPFGLGFGLAFLLSDTKADKEDGALFLPFEILFILSAQSITSFPVLA  171 (769)
T ss_pred             HHHHHHHHHHhhhHHHhhccCceeEEEEEEEeehhhHhhhhhhhhccccccccccccccccHHHHHHHHHhhcchhHHHH
Confidence            9999999999999999999999999999999999999988887665311   1  1  0111357778999999999999


Q ss_pred             HHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhh
Q 038269          165 RVITNLKIGKSDIGKLGMAAGIHSDMITMLIICIGAVFVLPQGNNTQEQIQSAIKMSASLIFQSVFAAKVSPVFMNWINN  244 (792)
Q Consensus       165 ~iL~el~ll~s~~g~l~l~~a~i~Di~~~~ll~i~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~v~r~~~~~i~~  244 (792)
                      ++|.|+|++++++||+++++++++|+.+|.++++..++.......    .....|.++..+++++++.+++||++.|+.+
T Consensus       172 ~iL~eLkll~se~Grla~saa~v~dv~~~~ll~~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~~v~~p~~~wi~k  247 (769)
T KOG1650|consen  172 RILAELKLLNSELGRLALSAAVVNDVAGWILLALALAFSSELKLS----PLRSVWDLVLVIGFVLFLFFVVRPLMKWIIK  247 (769)
T ss_pred             HHHHHhhchhchhhhhhhhhhhhhhHHHHHHHHHHHHHhccCCCc----chHHHHHHHHHHHHHHheeeehhhhHHHHhh
Confidence            999999999999999999999999999999888877766544321    1235777788888999999999999999999


Q ss_pred             hcCCCCcccchhHHHHHHHHHHHHHHhhhhC-chhhHHHHHHhhhcCCCCcchHHHHHHHhHHHHhhhhHHHHHhhcccc
Q 038269          245 ENPEGKAMKGTHLVLSLAFMVAVCSCSPFYG-YSPILSAFMAGIFFPSEGRMSKWTVGKVNYLLSTLYYPIFFFWMGFHA  323 (792)
Q Consensus       245 ~~~~~~~~~e~~~~~il~~~l~~~~~ae~~G-~~~~lgafvaGl~l~~~~~~~~~l~~kl~~~~~~~~~PlfF~~~Gl~~  323 (792)
                      |+||++++++.++...+..++.++.+++.++ .|+++|||+.|+++|+++|+++.+.+|+|++..++|+|+||+.+|+++
T Consensus       248 r~pe~~~~~~~~~~~~l~~vl~~~~~~~~~~~i~~~~Gaf~~Gl~iP~~~p~g~~L~ekle~~~~~~llPl~~~~~G~k~  327 (769)
T KOG1650|consen  248 RTPEGKPVSDAYICVTLLGVLASAFLTDLIGGIHSIFGAFILGLAIPHGPPLGSALIEKLEDLVSGLLLPLYFAISGLKT  327 (769)
T ss_pred             cCCCCCccccceehhhHHHHHHHHHHHHHhccccccchhheEEEecCCCCchhHHHHHHHHHHHHHHHHHHHHHhhccce
Confidence            9999999999999999999999999999988 899999999999999999999999999999999999999999999999


Q ss_pred             cccccccccchhHHHHHHHHHHHHhhhHHHHHHHHHhhCCChHHHHHHHHHhhhhhHHHHHHHHHhhcccccChhhHHHH
Q 038269          324 KLFTFEADTLGTWGRFFFLIVISTAGKVVGTVICGLMLGFHWPESVSLGLLLSAKGHFYIFLAIMGAVHNYITHTTAASL  403 (792)
Q Consensus       324 d~~~l~~~~~~~~~~~~~li~~~~~~K~l~~~l~~~~~~~~~re~~~lg~~l~~kG~v~l~l~~~~~~~~~i~~~~~~~l  403 (792)
                      |+..+.     .|......+...+++|+++++.++.++|+|+||++.+|++|++||.+++.+++.+.+.+.++++.|+++
T Consensus       328 di~~i~-----~~~~~~~~i~~~~~~K~l~t~~~sl~~k~p~~~~l~l~~lm~~kgl~el~~~~~~~~~~~~~~~~f~~~  402 (769)
T KOG1650|consen  328 DISRIN-----KWGALIRTILIFGAVKLLSTLGTSLYCKLPLRDSLALGLLMSTKGLVELIVLNTGLDRKILSDEGFTVM  402 (769)
T ss_pred             eHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHhhhHHHHHHHHHHhhcCCcccchHHHH
Confidence            987653     277777888889999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhhHHHHHhhhhhcccCcccccccccCCCCCcceEEEEecCCCChhhHHHHHHHhcCCCCCCceEEEEEEe
Q 038269          404 VIMIFFTIVHTPFVVQNIIGRARKHAPTKRMALQWLDPSNQLQILLCLHGSQNITSTLNFLEISRGTANPGVAVYVTDMI  483 (792)
Q Consensus       404 v~~~vl~~~~~~~li~~l~~~~~~~~~~~~r~i~~~~~~~elrILvcv~~~~~~~~li~l~~~~~~~~~sp~~v~~lhLv  483 (792)
                      +++++++|.++||+++.+|||.+++..|++|++|+.+++.++|++.|+|+++++++++++++++++++++|+++|++|++
T Consensus       403 vl~alv~t~I~~~~l~~~y~p~~~~~~y~~~~i~~~~~~~~Lril~cl~~~~~is~~i~~le~~~~~~~~p~~v~~lhlv  482 (769)
T KOG1650|consen  403 VLMALVSTFITPPLLMFLYDPTRKYHGYKKRGIQHLKPNSELRILTCLHGPENISGIINLLELSSGSLESPLSVYALHLV  482 (769)
T ss_pred             HHHHHHHHhhHHHHHHHhcchhhhcCceEeehhhhcCCCCceEEEEEecCCCcchHHHHHHHHcCCCCCCCcceeeeeee
Confidence            99999999999999999999999999999999999999999999999999999999999999999988789999999999


Q ss_pred             eecccchhhhhcccCccccccchhhhhhhhHHHHHHHHHhhhccCcceEEEEeEeecCCCChhHHHHHHHhhcCCcEEEe
Q 038269          484 ELTDQIAATLVQNEGIDTVTVTDKAVMEMREEITTAVQSYVDENGGGITLKRMLALSTFSGMPQDICILAEDLMVSLIIL  563 (792)
Q Consensus       484 el~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~~~~v~v~~~t~vs~~~~m~~dI~~~a~e~~~~liil  563 (792)
                      ||++|+.|++++|...+.....  ..+..++++..+|+.|++.+.++|+++++|++||+++||||||++|.++++++|++
T Consensus       483 eL~~~~~~~li~h~~~~~~~~~--~~s~~~~~i~~aF~~f~~~~~~~v~v~~~Ta~s~~~~m~edic~la~~~~~~liil  560 (769)
T KOG1650|consen  483 ELVGRATPLLISHKLRKNGRVE--SRSSSSDQINVAFEAFEKLSQEGVMVRTFTALSPEKLMHEDICTLALDKGVSLIIL  560 (769)
T ss_pred             ecccccchhhhhhhhccccccc--cccccchhhHHHHHHHHHhcCCcEEEEeehhhCChhhchhhhhHHHHhhCCcEEEe
Confidence            9999999999988753331111  12234678999999999855467999999999999999999999999999999999


Q ss_pred             cCCCCccCCCccccCCcchhHHHHHHhhhCCCceEEEecCCCCCccccccccccceeEEEEeccCcChHHHHHHHHHHhc
Q 038269          564 PFHKRQLEDGTLDEGHPGFRYVNRKLLRNATCSVGILVDRGFGSIENISRSQAASLNVAVIFIGGKDDREALAYASRVAR  643 (792)
Q Consensus       564 p~h~~~~~~g~~~~~~~~~~~~n~~vl~~apCsVgIlVdrg~~~~~~~~~~~~~~~~v~v~f~GG~ddreAL~~a~rma~  643 (792)
                      ||||+|+.+|+.++.+..+|.+|++++++|||||||+|||| +......+.....++|+++|+||+||||||+|++||++
T Consensus       561 pfhk~~~~~~~~e~~~~~~r~in~~vl~~aPCSVgIlvdRg-~~~~~~~~~~~~~~~v~~lF~GG~DDrEALa~~~rm~~  639 (769)
T KOG1650|consen  561 PFHKHWSDGGTLESDDPAIRELNRNVLKNAPCSVGILVDRG-LRRSGVTQKRGSSYKVVVLFLGGKDDREALALAKRMAE  639 (769)
T ss_pred             ehhhhccCCCceecCcHHHHHHHHHHHhcCCCeEEEEEecC-cccccceecccceeEEEEEecCChhhHHHHHHHHHHhh
Confidence            99999996668999999999999999999999999999998 32221111233678999999999999999999999999


Q ss_pred             CCCeEEEEEEeeecCCCCcccccccccCCcchhhhhhhhhHHHHHHH-HHhhcCCCcEEEE-EEecCChHHHHHHHHhhh
Q 038269          644 HPAVKLTVIRFLLDNSENPQRRAATYKDNTAELEEEMKIDDECFAEF-YERQVAEGHVAYA-EKHLANSSETFATLRSLE  721 (792)
Q Consensus       644 ~~~v~ltv~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~e~-~~~~~~~~~v~y~-e~~v~~~~e~~~~i~~~~  721 (792)
                      ||.+++||+||+++++..+         ....+++++++|++..+++ +....++.++.|. ||.|+|+.||.+++|+++
T Consensus       640 ~~~v~lTVirf~~~~~~~~---------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~ek~v~~~~et~~~~~~~~  710 (769)
T KOG1650|consen  640 NPRVTLTVIRFFPDESKYN---------RKVLVEVGKMLDQEGLEDFVKSTRESNLDIIYAEEKIVLNGAETTALLRSIT  710 (769)
T ss_pred             CCceEEEEEEeeccchhhc---------ccccchhhhhhhhhHHHHHHHHhhhchhhhhhhhHHHHhcchhHHHHHHHhc
Confidence            9999999999998654221         1112478888999999998 5444345578898 699999999999999999


Q ss_pred             cCccEEEEecCCCCCcccccCCcccCCCCccchhhhhhhcCCCCCceeEEEEeeecc
Q 038269          722 GQYALIIVGRGERANSILTVGMNDWQQCPELGPIGDVLSGSDFLVRTSVLIIKQHDF  778 (792)
Q Consensus       722 ~~~dL~iVGr~~~~~s~~~~gl~~w~e~~eLG~iGd~las~d~~~~~SvLvvqq~~~  778 (792)
                      +||||++|||+++.+++.++|++||+||||||+|||.|+|+||.+++||||+|||..
T Consensus       711 ~~ydL~ivGr~~~~~~~~t~gl~~W~e~pELg~IGd~las~~~~~~~svlvvqq~~~  767 (769)
T KOG1650|consen  711 EDYDLFIVGRSHGMLSEATGGLSEWSECPELGVIGDLLASSDFSSKVSVLVVQQQLY  767 (769)
T ss_pred             cccceEEEecccccccchhcCchhcccCccccccCccccccccCccceEEEEEeeec
Confidence            999999999999999999999999999999999999999999999999999999864

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=100.00  E-value=1.6e-46  Score=438.67  Aligned_cols=416  Identities=16%  Similarity=0.171  Sum_probs=335.7

Q ss_pred             HHHHHHHHHHHHHHHHHHhHcccCCChhHHHHHHHhhccCccccccccccccHHHHHHHHHHHHHHHHHHHhhccChhhh
Q 038269           29 GKIVGLLLAYVLTNLAHHLLKPMHQPRITSDIVIGLFLGNIQPIRNGFELEMIQTLNYIVEFGMICYMFVLGLEMDPYVI  108 (792)
Q Consensus        29 ~~l~~i~lil~~~~~~~~l~~rl~~P~iv~~IlaGillGp~~~~~~lf~~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l  108 (792)
                      .++.++.+++.++.++..++||+|+|+++|||++|+++||.++.  +.  ...+.++.++++|++++||.+|+|+|++.+
T Consensus         5 ~~l~~~~~~l~~a~i~~~l~~rl~lp~vlgyilaGillGP~~lg--~i--~~~~~i~~laelGvv~LlF~iGLEl~~~~l   80 (621)
T PRK03562          5 HTLIQALIYLGAAVLIVPIAVRLGLGSVLGYLIAGCIIGPWGLR--LV--TDVESILHFAEFGVVLMLFVIGLELDPQRL   80 (621)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhCccccc--CC--CCHHHHHHHHHHHHHHHHHHHHhCcCHHHH
Confidence            58899999999999999999999999999999999999998765  34  345678999999999999999999999999


Q ss_pred             hcCCcccchHhHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHhhccHHHHHHHHHhcCCCCCchhHHHHHHHHHH
Q 038269          109 FKPPTRDAIVAYGGMLSTFILGCSLTPFLHYSTHRKIVVAITLSFTLAGSGSHILTRVITNLKIGKSDIGKLGMAAGIHS  188 (792)
Q Consensus       109 ~~~~~~~~~ia~~~~l~p~~~~~~~~~~l~~~~~~~~~~al~lg~~ls~Ts~~vv~~iL~el~ll~s~~g~l~l~~a~i~  188 (792)
                      |+.+|+++.++..++++|+++++.++++++++    +..++++|.+++.||++++.++++|+|+++++.||.+++.++++
T Consensus        81 ~~~~~~~~~~g~~qv~~~~~~~~~~~~~~g~~----~~~al~ig~~la~SStaiv~~~L~e~~~l~t~~G~~~l~~ll~~  156 (621)
T PRK03562         81 WKLRRSIFGGGALQMVACGGLLGLFCMLLGLR----WQVALLIGLGLALSSTAIAMQAMNERNLMVTQMGRSAFAILLFQ  156 (621)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC----HHHHHHHHHHHHHHHHHHHHHHHHHhccccCchHHHHHHHHHHH
Confidence            99999999999999999999888877777643    34578899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhcCCCCCch-hhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhcCCCCcccchhHHHHHHHHHHH
Q 038269          189 DMITMLIICIGAVFVLPQGNNTQ-EQIQSAIKMSASLIFQSVFAAKVSPVFMNWINNENPEGKAMKGTHLVLSLAFMVAV  267 (792)
Q Consensus       189 Di~~~~ll~i~~~~~~~~~~~~~-~~~~~~l~~~~~~i~~~~~~~~v~r~~~~~i~~~~~~~~~~~e~~~~~il~~~l~~  267 (792)
                      |+.++++++++..+...+..... ..+...++.++.++++++++.++.+|+++|+.++.     .+|.++..++++++++
T Consensus       157 Dl~~i~ll~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~-----~~e~~~~~~l~lv~~~  231 (621)
T PRK03562        157 DIAAIPLVAMIPLLAASGASTTLGAFALSALKVAGALALVVLGGRYVTRPALRFVARSG-----LREVFTAVALFLVFGF  231 (621)
T ss_pred             HHHHHHHHHHHHHHccCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----CchHHHHHHHHHHHHH
Confidence            99999999887665433221111 11112222333333344455677788888876543     3577788888889999


Q ss_pred             HHHhhhhCchhhHHHHHHhhhcCCCCcchHHHHHHHhHHHHhhhhHHHHHhhcccccccccccccchhHHHHHHHHHHHH
Q 038269          268 CSCSPFYGYSPILSAFMAGIFFPSEGRMSKWTVGKVNYLLSTLYYPIFFFWMGFHAKLFTFEADTLGTWGRFFFLIVIST  347 (792)
Q Consensus       268 ~~~ae~~G~~~~lgafvaGl~l~~~~~~~~~l~~kl~~~~~~~~~PlfF~~~Gl~~d~~~l~~~~~~~~~~~~~li~~~~  347 (792)
                      +++++.+|+|+++|||++|+++++ ++++++++++++++ .++|+|+||+++||++|+..+.    ..|+.++.++++.+
T Consensus       232 a~la~~~Gls~~lGAFlAGl~l~~-~~~~~~le~~i~pf-~~lll~lFFi~vG~~id~~~l~----~~~~~il~~~~~~~  305 (621)
T PRK03562        232 GLLMEEVGLSMALGAFLAGVLLAS-SEYRHALESDIEPF-KGLLLGLFFIAVGMSIDFGTLL----ENPLRILILLLGFL  305 (621)
T ss_pred             HHHHHHhCccHHHHHHHHHHHhcC-CccHHHHHHHHHHH-HHHHHHHHHHHhhhhccHHHHH----HHHHHHHHHHHHHH
Confidence            999999999999999999999998 78899999999998 7999999999999999987552    23444556666788


Q ss_pred             hhhHHHHHHHHHhhCCChHHHHHHHHHhhhhhHHHHHHHHHhhcccccChhhHHHHHHHHHHHHhhhhHHHHHhhhhhcc
Q 038269          348 AGKVVGTVICGLMLGFHWPESVSLGLLLSAKGHFYIFLAIMGAVHNYITHTTAASLVIMIFFTIVHTPFVVQNIIGRARK  427 (792)
Q Consensus       348 ~~K~l~~~l~~~~~~~~~re~~~lg~~l~~kG~v~l~l~~~~~~~~~i~~~~~~~lv~~~vl~~~~~~~li~~l~~~~~~  427 (792)
                      ++|++++++.++++|+++++++.+|++|+++|+++++++..+.+.|+++++.|+.+++++++|++++|++.+...+...+
T Consensus       306 ~~K~~~~~~~~~~~g~~~~~a~~~gl~L~~~Gef~~vl~~~a~~~~~i~~~~~~~lv~~v~lS~~~tP~l~~~~~~~~~~  385 (621)
T PRK03562        306 AIKIAMLWLLARPLGVPRKQRRWFAVLLGQGGEFAFVVFGAAQMANVLEPEWAKLLTLAVALSMAATPLLLVLLDRLEQS  385 (621)
T ss_pred             HHHHHHHHHHHHHhCCCHhHHHHHHHHHhccccHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999887764333222


Q ss_pred             cCcccccccccCCCCCcceEEEEecCCCChhhHHHHHHH
Q 038269          428 HAPTKRMALQWLDPSNQLQILLCLHGSQNITSTLNFLEI  466 (792)
Q Consensus       428 ~~~~~~r~i~~~~~~~elrILvcv~~~~~~~~li~l~~~  466 (792)
                      +....+ . ....++.+.|+++|-++ +..+.+.+.++.
T Consensus       386 ~~~~~~-~-~~~~~~~~~~vII~G~G-r~G~~va~~L~~  421 (621)
T PRK03562        386 RTEEAR-E-ADEIDEQQPRVIIAGFG-RFGQIVGRLLLS  421 (621)
T ss_pred             Hhhhcc-c-ccccccccCcEEEEecC-hHHHHHHHHHHh
Confidence            111111 1 11111224689999975 555655555443

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=100.00  E-value=3.6e-46  Score=434.40  Aligned_cols=382  Identities=15%  Similarity=0.203  Sum_probs=320.7

Q ss_pred             HHHHHHHHHHHHHHHHHhHcccCCChhHHHHHHHhhccCccccccccccccHHHHHHHHHHHHHHHHHHHhhccChhhhh
Q 038269           30 KIVGLLLAYVLTNLAHHLLKPMHQPRITSDIVIGLFLGNIQPIRNGFELEMIQTLNYIVEFGMICYMFVLGLEMDPYVIF  109 (792)
Q Consensus        30 ~l~~i~lil~~~~~~~~l~~rl~~P~iv~~IlaGillGp~~~~~~lf~~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l~  109 (792)
                      ++..++++++++.+++.++||+|+|++++||++|+++||+.+.  .+  ...+.++.++++|++++||.+|+|+|++.+|
T Consensus         7 ~~~~~~~~l~~a~~~~~l~~rl~~P~ivg~IlaGillGp~~lg--~~--~~~~~~~~la~lGli~llF~~Gle~d~~~l~   82 (558)
T PRK10669          7 LITTIVGGLVLAFILGMLANRLRISPLVGYLLAGVLAGPFTPG--FV--ADTKLAPELAELGVILLMFGVGLHFSLKDLM   82 (558)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhhCccccc--cc--cchHHHHHHHHHHHHHHHHHhHhcCCHHHHH
Confidence            4557788899999999999999999999999999999998765  34  2457789999999999999999999999999


Q ss_pred             cCCcccchHhHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHhhccHHHHHHHHHhcCCCCCchhHHHHHHHHHHH
Q 038269          110 KPPTRDAIVAYGGMLSTFILGCSLTPFLHYSTHRKIVVAITLSFTLAGSGSHILTRVITNLKIGKSDIGKLGMAAGIHSD  189 (792)
Q Consensus       110 ~~~~~~~~ia~~~~l~p~~~~~~~~~~l~~~~~~~~~~al~lg~~ls~Ts~~vv~~iL~el~ll~s~~g~l~l~~a~i~D  189 (792)
                      +.++.....+..++++|+++++++++.+++    .+..++++|+++|.||++++.++++|+|+++++.||+++++++++|
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~al~lg~~ls~tS~~vv~~~L~e~~~l~s~~G~~~l~~~~~~D  158 (558)
T PRK10669         83 AVKSIAIPGAIAQIAVATLLGMALSAVLGW----SLMTGIVFGLCLSTASTVVLLRALEERQLIDSQRGQIAIGWLIVED  158 (558)
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHhCC----CHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCcchHHHHHHHHHHH
Confidence            998777777888888999888888777754    3355788999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcCC--CCCch-hhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhcCCCCcccchhHHHHHHHHHH
Q 038269          190 MITMLIICIGAVFVLPQ--GNNTQ-EQIQSAIKMSASLIFQSVFAAKVSPVFMNWINNENPEGKAMKGTHLVLSLAFMVA  266 (792)
Q Consensus       190 i~~~~ll~i~~~~~~~~--~~~~~-~~~~~~l~~~~~~i~~~~~~~~v~r~~~~~i~~~~~~~~~~~e~~~~~il~~~l~  266 (792)
                      +.++++++++..+....  +.... .......+.++..++++++..++.|++.+|+.++.++.+ .+|.++..+++++++
T Consensus       159 l~~i~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~e~~~l~~l~~~l~  237 (558)
T PRK10669        159 LVMVLTLVLLPAVAGMMEQGDVGFATLAVDLGITIGKVIAFIAIMMLVGRRLVPWILARSAATG-SRELFTLSVLALALG  237 (558)
T ss_pred             HHHHHHHHHHHHHhcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CchHHHHHHHHHHHH
Confidence            99999888776543211  11110 111123445555666777778889999999998876654 467777777777777


Q ss_pred             HHHH-hhhhCchhhHHHHHHhhhcCCCCcchHHHHHHHhHHHHhhhhHHHHHhhcccccccccccccchhHHHHHHHHHH
Q 038269          267 VCSC-SPFYGYSPILSAFMAGIFFPSEGRMSKWTVGKVNYLLSTLYYPIFFFWMGFHAKLFTFEADTLGTWGRFFFLIVI  345 (792)
Q Consensus       267 ~~~~-ae~~G~~~~lgafvaGl~l~~~~~~~~~l~~kl~~~~~~~~~PlfF~~~Gl~~d~~~l~~~~~~~~~~~~~li~~  345 (792)
                      +++. ++.+|+|+++|||++|+++|+ +++++++.+...++ .++|+|+||+++|+++|+..+.    ..+..++.++++
T Consensus       238 ~a~~~~~~lGls~~lGAflaGl~l~~-~~~~~~~~~~~~~~-~~~f~plFFv~~G~~~d~~~l~----~~~~~~~~~~~~  311 (558)
T PRK10669        238 IAFGAVELFDVSFALGAFFAGMVLNE-SELSHRAAHDTLPL-RDAFAVLFFVSVGMLFDPMILI----QQPLAVLATLAI  311 (558)
T ss_pred             HHHHHHHHcCccHHHHHHHHHHHHhC-ChhHHHHHHHHhhH-HHHHHHHHHHHhhhhcCHHHHH----HHHHHHHHHHHH
Confidence            7764 699999999999999999997 67888888877776 7899999999999999987552    233444556777


Q ss_pred             HHhhhHHHHHHHHHhhCCChHHHHHHHHHhhhhhHHHHHHHHHhhcccccChhhHHHHHHHHHHHHhhhhHHHHHhhhhh
Q 038269          346 STAGKVVGTVICGLMLGFHWPESVSLGLLLSAKGHFYIFLAIMGAVHNYITHTTAASLVIMIFFTIVHTPFVVQNIIGRA  425 (792)
Q Consensus       346 ~~~~K~l~~~l~~~~~~~~~re~~~lg~~l~~kG~v~l~l~~~~~~~~~i~~~~~~~lv~~~vl~~~~~~~li~~l~~~~  425 (792)
                      .+++|++++++.++++|+++|+++.+|+.|++||+++++++..+++.|+++++.|+.+++++++|++++|++.++..|..
T Consensus       312 ~~v~K~~~~~~~~~~~g~~~~~a~~~gl~l~~~Gef~lii~~~~~~~gii~~~~~~~~v~~~~~t~~~~P~l~~~~~~~~  391 (558)
T PRK10669        312 IVFGKSLAAFFLVRLFGHSRRTALTIAASLAQIGEFAFILAGLGMALNLLPQAGQNLVLAGAILSIMLNPVLFTLLERYL  391 (558)
T ss_pred             HHHHHHHHHHHHHHHhCCChhhHHHHHHHHhcccchHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence            88999999999999999999999999999999999999999999999999999999999999999999999998876654


Q ss_pred             c
Q 038269          426 R  426 (792)
Q Consensus       426 ~  426 (792)
                      +
T Consensus       392 ~  392 (558)
T PRK10669        392 A  392 (558)
T ss_pred             H
Confidence            3

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=100.00  E-value=5.7e-45  Score=425.02  Aligned_cols=414  Identities=14%  Similarity=0.170  Sum_probs=331.0

Q ss_pred             HHHHHHHHHHHHHHHHHHhHcccCCChhHHHHHHHhhccCccccccccccccHHHHHHHHHHHHHHHHHHHhhccChhhh
Q 038269           29 GKIVGLLLAYVLTNLAHHLLKPMHQPRITSDIVIGLFLGNIQPIRNGFELEMIQTLNYIVEFGMICYMFVLGLEMDPYVI  108 (792)
Q Consensus        29 ~~l~~i~lil~~~~~~~~l~~rl~~P~iv~~IlaGillGp~~~~~~lf~~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l  108 (792)
                      .++.++.+++.++.++.+++||+|+|++++|+++|+++||.++.  +++  ..+.+..++++|++++||.+|+|+|++.+
T Consensus         5 ~~~~~~~~~l~~a~~~~~l~~rl~~p~ilg~ilaGillGP~~lg--~i~--~~~~i~~laelGvv~LLF~iGLel~~~~l   80 (601)
T PRK03659          5 DLLTAGVLFLFAAVVAVPLAQRLGIGAVLGYLLAGIAIGPWGLG--FIS--DVDEILHFSELGVVFLMFIIGLELNPSKL   80 (601)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhcccccc--CCC--cHHHHHHHHHHHHHHHHHHHHhcCCHHHH
Confidence            36778999999999999999999999999999999999998765  443  44668899999999999999999999999


Q ss_pred             hcCCcccchHhHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHhhccHHHHHHHHHhcCCCCCchhHHHHHHHHHH
Q 038269          109 FKPPTRDAIVAYGGMLSTFILGCSLTPFLHYSTHRKIVVAITLSFTLAGSGSHILTRVITNLKIGKSDIGKLGMAAGIHS  188 (792)
Q Consensus       109 ~~~~~~~~~ia~~~~l~p~~~~~~~~~~l~~~~~~~~~~al~lg~~ls~Ts~~vv~~iL~el~ll~s~~g~l~l~~a~i~  188 (792)
                      |+.+|+++.++..++++|+++++.+.++++++    +..++++|++++.||++++.++|+|+|+++++.||++++..+++
T Consensus        81 ~~~~~~~~~~g~~~v~~t~~~~~~~~~~~g~~----~~~a~~~g~~la~SSTaiv~~iL~e~~~~~t~~G~~~l~vll~~  156 (601)
T PRK03659         81 WQLRRSIFGVGAAQVLLSAAVLAGLLMLTDFS----WQAAVVGGIGLAMSSTAMALQLMREKGMNRSESGQLGFSVLLFQ  156 (601)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC----HHHHHHHHHHHHHHHHHHHHHHHHHcccccCchHHHHHHHHHHH
Confidence            99999999999999999998777766665532    34578889999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhcCCCCcccchhHHHHHHHHHHHH
Q 038269          189 DMITMLIICIGAVFVLPQGNNTQEQIQSAIKMSASLIFQSVFAAKVSPVFMNWINNENPEGKAMKGTHLVLSLAFMVAVC  268 (792)
Q Consensus       189 Di~~~~ll~i~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~v~r~~~~~i~~~~~~~~~~~e~~~~~il~~~l~~~  268 (792)
                      |+.++++++++..+...+...  ..+...++.++..+++++++.++.+|+++|+.+.     +.+|.++..+++++++++
T Consensus       157 Di~~i~ll~l~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~e~~~~~~l~~vl~~a  229 (601)
T PRK03659        157 DLAVIPALALVPLLAGSADEH--FDWMKIGMKVLAFAGMLIGGRYLLRPLFRFIAAS-----GVREVFTAAALLLVLGSA  229 (601)
T ss_pred             HHHHHHHHHHHHHHhcCCCcc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----CCchHHHHHHHHHHHHHH
Confidence            999999988876554322211  0111222222333333444556777888777543     236788888888899999


Q ss_pred             HHhhhhCchhhHHHHHHhhhcCCCCcchHHHHHHHhHHHHhhhhHHHHHhhcccccccccccccchhHHHHHHHHHHHHh
Q 038269          269 SCSPFYGYSPILSAFMAGIFFPSEGRMSKWTVGKVNYLLSTLYYPIFFFWMGFHAKLFTFEADTLGTWGRFFFLIVISTA  348 (792)
Q Consensus       269 ~~ae~~G~~~~lgafvaGl~l~~~~~~~~~l~~kl~~~~~~~~~PlfF~~~Gl~~d~~~l~~~~~~~~~~~~~li~~~~~  348 (792)
                      ++++.+|+|+++|||++|+++++ ++++++++++++++ .++|+|+||+++||++|+..+.    ..|..++.++++.++
T Consensus       230 ~l~~~~Gls~~LGAFlaGl~l~~-s~~~~~l~~~i~pf-~~lll~lFFi~vGm~id~~~l~----~~~~~il~~~~~~l~  303 (601)
T PRK03659        230 LFMDALGLSMALGTFIAGVLLAE-SEYRHELEIAIEPF-KGLLLGLFFISVGMALNLGVLY----THLLWVLISVVVLVA  303 (601)
T ss_pred             HHHHHhCccHHHHHHHHHHHhcC-CchHHHHHHHHHHH-HHHHHHHHHHHHhhhccHHHHH----HhHHHHHHHHHHHHH
Confidence            99999999999999999999998 78999999999998 7999999999999999997653    245556666777889


Q ss_pred             hhHHHHHHHHHhhCCChHHHHHHHHHhhhhhHHHHHHHHHhhcccccChhhHHHHHHHHHHHHhhhhHHHHHhhhhh-cc
Q 038269          349 GKVVGTVICGLMLGFHWPESVSLGLLLSAKGHFYIFLAIMGAVHNYITHTTAASLVIMIFFTIVHTPFVVQNIIGRA-RK  427 (792)
Q Consensus       349 ~K~l~~~l~~~~~~~~~re~~~lg~~l~~kG~v~l~l~~~~~~~~~i~~~~~~~lv~~~vl~~~~~~~li~~l~~~~-~~  427 (792)
                      +|++++++.++++|+++++++.+|++|+++|+++++++..+.+.|+++++.|+.++.++++|++++|.+.+...++. ++
T Consensus       304 ~K~~~~~~~~~~~g~~~~~al~~g~~L~~~Gef~~vl~~~a~~~g~i~~~~~~~lv~~v~ls~~~tP~l~~~~~~~~~~~  383 (601)
T PRK03659        304 VKGLVLYLLARLYGLRSSERMQFAGVLSQGGEFAFVLFSAASSQRLLQGDQMALLLVVVTLSMMTTPLLMKLIDKWLARR  383 (601)
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHhccccHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999988887776644432 22


Q ss_pred             cCcc-cccccccCCCCCcceEEEEecCCCChhhHHHHHH
Q 038269          428 HAPT-KRMALQWLDPSNQLQILLCLHGSQNITSTLNFLE  465 (792)
Q Consensus       428 ~~~~-~~r~i~~~~~~~elrILvcv~~~~~~~~li~l~~  465 (792)
                      +... +.+..+ ...+.+.+++.|-++ +-.+.+.+.++
T Consensus       384 ~~~~~~~~~~~-~~~~~~~~vII~G~G-r~G~~va~~L~  420 (601)
T PRK03659        384 LNGPEEEDEKP-WVEDDKPQVIIVGFG-RFGQVIGRLLM  420 (601)
T ss_pred             hcccccccccc-ccccccCCEEEecCc-hHHHHHHHHHH
Confidence            2211 110101 111224689999875 55555544444

>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]

Probab=100.00  E-value=1e-43  Score=393.80  Aligned_cols=382  Identities=21%  Similarity=0.326  Sum_probs=319.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHcccCCChhHHHHHHHhhccCccccccccccccHHHHHHHHHHHHHHHHHHHhhccChhh
Q 038269           28 SGKIVGLLLAYVLTNLAHHLLKPMHQPRITSDIVIGLFLGNIQPIRNGFELEMIQTLNYIVEFGMICYMFVLGLEMDPYV  107 (792)
Q Consensus        28 p~~l~~i~lil~~~~~~~~l~~rl~~P~iv~~IlaGillGp~~~~~~lf~~~~~~~l~~l~~lgl~~llF~~Gle~d~~~  107 (792)
                      ...+.|+.++++++.+.++++||+|+|+++||+++|+++||.+..   +..+..+.++.++++|++++||.+|+|+|+++
T Consensus         5 ~~~l~~~~iiL~~a~i~~~l~~rl~lp~vlg~llaGiilGp~~~~---~~~~~~~~i~~laelGvi~LlF~~GLE~~~~~   81 (397)
T COG0475           5 SLILLQLLILLLVAVILGPLFKRLGLPPVLGYLLAGIILGPWGLL---LIIESSEIIELLAELGVVFLLFLIGLEFDLER   81 (397)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHhcCccccc---ccCCchHHHHHHHHHhHHHHHHHHHHCcCHHH
Confidence            457889999999999999999999999999999999999995443   23367899999999999999999999999999


Q ss_pred             hhcCCcc-cchHhHHHHHHHHHHHHHHHH-HhhcccchhHHHHHHHHHHHhhccHHHHHHHHHhcCCCCCchhHHHHHHH
Q 038269          108 IFKPPTR-DAIVAYGGMLSTFILGCSLTP-FLHYSTHRKIVVAITLSFTLAGSGSHILTRVITNLKIGKSDIGKLGMAAG  185 (792)
Q Consensus       108 l~~~~~~-~~~ia~~~~l~p~~~~~~~~~-~l~~~~~~~~~~al~lg~~ls~Ts~~vv~~iL~el~ll~s~~g~l~l~~a  185 (792)
                      +||++|+ ....+..++..|+.++....+ .++++.    ..++++|.+++.||+++++++++|+|.++++.|+++++++
T Consensus        82 l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~----~~al~lg~~l~~sS~~i~~~iL~e~~~~~~~~g~~~l~~~  157 (397)
T COG0475          82 LKKVGRSVGLGVAQVGLTAPFLLGLLLLLGILGLSL----IAALFLGAALALSSTAIVLKILMELGLLKTREGQLILGAL  157 (397)
T ss_pred             HHHhchhhhhhHHHHHHHHHHHHHHHHHHHHhccCh----HHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHH
Confidence            9999999 888888888889888865544 354332    3489999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhcCCCCcccchhHHHHHHHHH
Q 038269          186 IHSDMITMLIICIGAVFVLPQGNNTQEQIQSAIKMSASLIFQSVFAAKVSPVFMNWINNENPEGKAMKGTHLVLSLAFMV  265 (792)
Q Consensus       186 ~i~Di~~~~ll~i~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~v~r~~~~~i~~~~~~~~~~~e~~~~~il~~~l  265 (792)
                      +++|+.+++++++...+...+.....    .++.......++.++..+..|++.+++.|+.... +.+|..+..++++++
T Consensus       158 i~~Di~~i~lLai~~~l~~~g~~~~~----~~~~~~~~~~~f~~~~l~~g~~l~~~~~r~~~~~-~~~e~~~~~~l~i~l  232 (397)
T COG0475         158 VFDDIAAILLLAIVPALAGGGSGSVG----FILGLLLAILAFLALLLLLGRYLLPPLFRRVAKT-ESSELFILFVLLLVL  232 (397)
T ss_pred             HHHHHHHHHHHHHHHHHccCCCccHh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cchHHHHHHHHHHHH
Confidence            99999999999999887665443211    1333333444444444444455555554443221 235788899999999


Q ss_pred             HHHHHhhhhCchhhHHHHHHhhhcCCCCcch-HHHHHHHhHHHHhhhhHHHHHhhcccccccccccccchhHHHHHHHHH
Q 038269          266 AVCSCSPFYGYSPILSAFMAGIFFPSEGRMS-KWTVGKVNYLLSTLYYPIFFFWMGFHAKLFTFEADTLGTWGRFFFLIV  344 (792)
Q Consensus       266 ~~~~~ae~~G~~~~lgafvaGl~l~~~~~~~-~~l~~kl~~~~~~~~~PlfF~~~Gl~~d~~~l~~~~~~~~~~~~~li~  344 (792)
                      .+++++|.+|+|+++|||++|+++++. +.+ ++++++++++.+++|+|+||+.+|+.+|++.+.    +.+..++.++.
T Consensus       233 ~~a~l~e~~gls~ilGAFlaGl~ls~~-~~~~~~l~~~i~~~~~~~fiplFFi~vG~~~dl~~l~----~~~~~~l~~~~  307 (397)
T COG0475         233 GAAYLAELLGLSMILGAFLAGLLLSES-EYRKHELEEKIEPFGDGLFIPLFFISVGMSLDLGVLL----ENLLLILLLVA  307 (397)
T ss_pred             HHHHHHHHhChhHHHHHHHHHHHhccc-ccchHHHHHHHHhHHhHHHHHHHHHHhhHHcCHHHHh----ccHHHHHHHHH
Confidence            999999999999999999999999984 555 799999999977799999999999999998764    24455777788


Q ss_pred             HHHhhhHHHHHHHHHhhCCChHHHHHHHHHhhhhhHHHHHHHHHhhcccccChhhHHHHHHHHHHHHhhhhHHHHHhhhh
Q 038269          345 ISTAGKVVGTVICGLMLGFHWPESVSLGLLLSAKGHFYIFLAIMGAVHNYITHTTAASLVIMIFFTIVHTPFVVQNIIGR  424 (792)
Q Consensus       345 ~~~~~K~l~~~l~~~~~~~~~re~~~lg~~l~~kG~v~l~l~~~~~~~~~i~~~~~~~lv~~~vl~~~~~~~li~~l~~~  424 (792)
                      +..++|.+++++.++..|+++|+++..|+.+.++|+++++.++.+.+ +.++++.+...+.++++++.+.+.+.+.++++
T Consensus       308 ~~i~~K~~~~~~~~~~~g~~~~~~~~~g~~~~~~ge~~~v~~~~~~~-~~i~~~~~~~~v~~smi~t~i~~~~~~~~~~~  386 (397)
T COG0475         308 LAILGKILGAYLAARLLGFSKRLALGIGLLLRQGGEFAFVLAGIALG-SAISEALLTAVVILSMITTPILPLLTPILLKR  386 (397)
T ss_pred             HHHHHHHHHHHHHHHHHcCcHHHHHHHHhhhhhhhHHHHHHHHhccc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88999999999999999999999999999999999999999998877 68889999999999999999988888888776


Q ss_pred             hcc
Q 038269          425 ARK  427 (792)
Q Consensus       425 ~~~  427 (792)
                      ..+
T Consensus       387 ~~~  389 (397)
T COG0475         387 LLK  389 (397)
T ss_pred             hhc
Confidence            544

>PRK05326 potassium/proton antiporter; Reviewed

Probab=100.00  E-value=1.1e-38  Score=371.45  Aligned_cols=385  Identities=11%  Similarity=0.063  Sum_probs=309.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHcccCCChhHHHHHHHhhccCccccccccccccHHHHHHHHHHHHHHHHHHHhhccChhh
Q 038269           28 SGKIVGLLLAYVLTNLAHHLLKPMHQPRITSDIVIGLFLGNIQPIRNGFELEMIQTLNYIVEFGMICYMFVLGLEMDPYV  107 (792)
Q Consensus        28 p~~l~~i~lil~~~~~~~~l~~rl~~P~iv~~IlaGillGp~~~~~~lf~~~~~~~l~~l~~lgl~~llF~~Gle~d~~~  107 (792)
                      -.++++++++++++.+++.+++|+++|.+++++++|+++||.++..  .+.+..+..+.++++|+++++|..|+|+|++.
T Consensus         5 ~~~ll~~~~ll~l~~~~~~l~~r~~~P~ll~~il~GillGp~~lg~--i~~~~~~~~~~i~~l~L~~iLF~~Gl~~~~~~   82 (562)
T PRK05326          5 NSLLLIGALLLLLSILASRLSSRLGIPSLLLFLAIGMLAGEDGLGG--IQFDNYPLAYLVGNLALAVILFDGGLRTRWSS   82 (562)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhCccccCC--cccCcHHHHHHHHHHHHHHHHHcCccCCCHHH
Confidence            3678899999999999999999999999999999999999987652  22245678899999999999999999999999


Q ss_pred             hhcCCcccchHhHHHHHHHHHHHH-HHHHHhhcccchhHHHHHHHHHHHhhccHHHHHHHHHhcCC-CCCchhHHHHHHH
Q 038269          108 IFKPPTRDAIVAYGGMLSTFILGC-SLTPFLHYSTHRKIVVAITLSFTLAGSGSHILTRVITNLKI-GKSDIGKLGMAAG  185 (792)
Q Consensus       108 l~~~~~~~~~ia~~~~l~p~~~~~-~~~~~l~~~~~~~~~~al~lg~~ls~Ts~~vv~~iL~el~l-l~s~~g~l~l~~a  185 (792)
                      +|+++++++.++..++++|++++. ..++++++    .+..++++|+++++||++++.++++|.|+ +++++++++.++|
T Consensus        83 l~~~~~~~~~la~~gv~~t~~~~g~~~~~l~g~----~~~~alllgai~s~Td~a~v~~iL~~~~l~l~~~v~~~l~~eS  158 (562)
T PRK05326         83 FRPALGPALSLATLGVLITAGLTGLFAHWLLGL----DWLEGLLLGAIVGSTDAAAVFSLLRGKGLNLKERVASTLEIES  158 (562)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----CHHHHHHHhhhhccCchHHHHHHHhccCCCcchhHHhHhhhhh
Confidence            999999999999999999988754 44455543    34568999999999999999999999995 7999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhcCCCCcccchhHHHHHHHHH
Q 038269          186 IHSDMITMLIICIGAVFVLPQGNNTQEQIQSAIKMSASLIFQSVFAAKVSPVFMNWINNENPEGKAMKGTHLVLSLAFMV  265 (792)
Q Consensus       186 ~i~Di~~~~ll~i~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~v~r~~~~~i~~~~~~~~~~~e~~~~~il~~~l  265 (792)
                      .+||.++++++.++..+...+....   .+..+..++..+++.++.++++++++.|+.+|....  .++.+..+++++++
T Consensus       159 ~~nD~~ai~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~~~G~~~g~l~~~l~~~~~~~--~~~~~~i~~l~~~l  233 (562)
T PRK05326        159 GSNDPMAVFLTITLIELITGGETGL---SWGFLLLFLQQFGLGALIGLLGGWLLVQLLNRIALP--AEGLYPILVLAGAL  233 (562)
T ss_pred             hcccHHHHHHHHHHHHHHhCCCCcc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc--hhhHHHHHHHHHHH
Confidence            9999999998887766654433211   111223333344455555667778888888776321  24567788888999


Q ss_pred             HHHHHhhhhCchhhHHHHHHhhhcCCCCcchHHHHHHHhHHHHhhhhHHHHHhhcccccccccccccchhHHHHHHHHHH
Q 038269          266 AVCSCSPFYGYSPILSAFMAGIFFPSEGRMSKWTVGKVNYLLSTLYYPIFFFWMGFHAKLFTFEADTLGTWGRFFFLIVI  345 (792)
Q Consensus       266 ~~~~~ae~~G~~~~lgafvaGl~l~~~~~~~~~l~~kl~~~~~~~~~PlfF~~~Gl~~d~~~l~~~~~~~~~~~~~li~~  345 (792)
                      ++++++|.+|.|+++|+|++|+++++.++..+...+++.+...+++.|+||+++|+.+|++.+.   ...+..+++.+++
T Consensus       234 ~~~~~a~~lg~Sg~la~~iaGl~l~n~~~~~~~~i~~~~~~l~~l~~~~~Fv~lGl~~~~~~l~---~~~~~~l~i~~~l  310 (562)
T PRK05326        234 LIFALTAALGGSGFLAVYLAGLVLGNRPIRHRHSILRFFDGLAWLAQIGMFLVLGLLVTPSRLL---DIALPALLLALFL  310 (562)
T ss_pred             HHHHHHHHHCCcHHHHHHHHHHHHhCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH---HHHHHHHHHHHHH
Confidence            9999999999999999999999999865444444555555558899999999999999987553   1123323333456


Q ss_pred             HHhhhHHHHHHHHHhhCCChHHHHHHHHHhhhhhHHHHHHHHHhhcccccC-hhhHHHHHHHHHHHHhhhhHHHHHhhhh
Q 038269          346 STAGKVVGTVICGLMLGFHWPESVSLGLLLSAKGHFYIFLAIMGAVHNYIT-HTTAASLVIMIFFTIVHTPFVVQNIIGR  424 (792)
Q Consensus       346 ~~~~K~l~~~l~~~~~~~~~re~~~lg~~l~~kG~v~l~l~~~~~~~~~i~-~~~~~~lv~~~vl~~~~~~~li~~l~~~  424 (792)
                      .+++|+++++++.+.++++|||+..+|| .++||.++++++..+...++.+ +..|+++.+++++|+++.++.++.+.|+
T Consensus       311 ~~vaR~l~v~l~~~~~~~~~~e~~~i~~-~g~RG~v~i~lA~~~~~~~~~~~~~~~~~~~~vvl~S~~i~g~tl~~~a~~  389 (562)
T PRK05326        311 ILVARPLAVFLSLLPFRFNLREKLFISW-VGLRGAVPIVLATFPMMAGLPNAQLIFNVVFFVVLVSLLLQGTTLPWAARK  389 (562)
T ss_pred             HHHHHHHHHHHHHccCCCCHhhhheeee-ecchhHHHHHHHHHHHHcCCCchhhhhhhhheeeHHHHHHHHhhHHHHHHH
Confidence            7789999999999999999999999999 5899999999999999988886 4667888888888888888888877766


Q ss_pred             hcc
Q 038269          425 ARK  427 (792)
Q Consensus       425 ~~~  427 (792)
                      .+-
T Consensus       390 l~l  392 (562)
T PRK05326        390 LGV  392 (562)
T ss_pred             cCC
Confidence            543

>PF00999 Na_H_Exchanger: Sodium/hydrogen exchanger family; InterPro: IPR006153 Sodium proton exchangers (NHEs) constitute a large family of integral membrane protein transporters that are responsible for the counter-transport of protons and sodium ions across lipid bilayers [, ]

Probab=100.00  E-value=4.1e-39  Score=359.43  Aligned_cols=376  Identities=19%  Similarity=0.351  Sum_probs=84.2

Q ss_pred             HHHHHHHHHHHhHcccCCChhHHHHHHHhhccCccccccccccccHHHHHHHHHHHHHHHHHHHhhccChhhhhcCCccc
Q 038269           36 LAYVLTNLAHHLLKPMHQPRITSDIVIGLFLGNIQPIRNGFELEMIQTLNYIVEFGMICYMFVLGLEMDPYVIFKPPTRD  115 (792)
Q Consensus        36 lil~~~~~~~~l~~rl~~P~iv~~IlaGillGp~~~~~~lf~~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l~~~~~~~  115 (792)
                      ++++.+.+.+.++||+++|.+++|+++|+++||.++.  +++++ ....+.++++|+.++||.+|+|+|.+.+||++|++
T Consensus         3 lli~~~~~~~~l~~r~~iP~~i~~i~~Gi~lg~~~~~--~~~~~-~~~~~~l~~i~l~~llF~~G~~~d~~~l~~~~~~~   79 (380)
T PF00999_consen    3 LLILLAFVAGILFRRLGIPSIIGYILVGIVLGPSGLG--LLEPD-NPSFELLAEIGLAFLLFEAGLELDIKELRRNWRRA   79 (380)
T ss_dssp             ------------------------------------------------S-SSHHHHS--SSHHHHTTGGGG---------
T ss_pred             EEeehHHHHHHHHHHhCCCHHHHHHHheeehhhhhhh--hccch-hhHHHHHHHHHHHHHHHHHHHhhcccccccccccc
Confidence            3445566667789999999999999999999998765  33212 48889999999999999999999999999999999


Q ss_pred             chHhHHHHHHHHHH-HHHHHHHhhcccchhHHHHHHHHHHHhhccHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHH
Q 038269          116 AIVAYGGMLSTFIL-GCSLTPFLHYSTHRKIVVAITLSFTLAGSGSHILTRVITNLKIGKSDIGKLGMAAGIHSDMITML  194 (792)
Q Consensus       116 ~~ia~~~~l~p~~~-~~~~~~~l~~~~~~~~~~al~lg~~ls~Ts~~vv~~iL~el~ll~s~~g~l~l~~a~i~Di~~~~  194 (792)
                      +.+++.++++|+++ ++.+++++. ..++++..++++|.++++||++++.++++|.+..+++.++++++++++||+.+++
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~al~l~~~~~~ts~~~v~~~l~~~~~~~~~~~~~~~~~~~i~d~~~i~  158 (380)
T PF00999_consen   80 LALGLVGFLLPFILVGFLLSFFLF-ILGLSWAEALLLGAILSATSPAIVSPVLKELGLLPSRLGRLLLSESVINDIIAII  158 (380)
T ss_dssp             -----------------------------------TTHHHHTT--HHHHHHHH-HHHT-SSTTHHHHTTTTTTTTTTTTT
T ss_pred             cccccceeeehhhHHHHHHHHhhc-cchhhhHHHhhhHHhhhcccccchhhhhhhhhcccccccchhhhhchhhccchhh
Confidence            99999999999988 766664211 1122345589999999999999999999888889999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhcCCCCcccchhHHHHHHHHHHHHHHhhhh
Q 038269          195 IICIGAVFVLPQGNNTQEQIQSAIKMSASLIFQSVFAAKVSPVFMNWINNENPEGKAMKGTHLVLSLAFMVAVCSCSPFY  274 (792)
Q Consensus       195 ll~i~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~v~r~~~~~i~~~~~~~~~~~e~~~~~il~~~l~~~~~ae~~  274 (792)
                      ++.+.......+....   .......++..++..++..++.+++.+|+.++.   ++.++.++..+++.++..++++|.+
T Consensus       159 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~a~~~  232 (380)
T PF00999_consen  159 LLSILISLAQASGQSS---LGQLLLSFLWIILIGIVIGLLFGWLLRRLIRRA---SPSSEIFILLVLALILLLYGLAEIL  232 (380)
T ss_dssp             TT------------------------------------------------------------------------------
T ss_pred             hhhhhhhhhccccccc---ccchhcchhhhhhhheeeecccchHHHHhhhhc---cccchhhHHHHHHHHhhhccccccc
Confidence            8888776652111111   011222222233333344444444555554443   1345777888999999999999999


Q ss_pred             CchhhHHHHHHhhhcCCCCcchHHHHHHHhHHHHhhhhHHHHHhhcccccccccccccchhHHHHHHHHHHHHhhhHHHH
Q 038269          275 GYSPILSAFMAGIFFPSEGRMSKWTVGKVNYLLSTLYYPIFFFWMGFHAKLFTFEADTLGTWGRFFFLIVISTAGKVVGT  354 (792)
Q Consensus       275 G~~~~lgafvaGl~l~~~~~~~~~l~~kl~~~~~~~~~PlfF~~~Gl~~d~~~l~~~~~~~~~~~~~li~~~~~~K~l~~  354 (792)
                      |.|+++|+|++|+++++ .+.++++.++++++.++++.|+||+.+|+++|++.+.. +...|...+++.+..+++|++++
T Consensus       233 g~s~~l~af~~Gl~~~~-~~~~~~~~~~l~~~~~~~~~~lfF~~iG~~~~~~~l~~-~~~~~~~~~~~~~~~~~~k~~~~  310 (380)
T PF00999_consen  233 GLSGILGAFIAGLILSN-SPFAERLEEKLESFWYGFFIPLFFVFIGMSLDFSSLFN-SPSVIILVLLLLIAILLGKFIGV  310 (380)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccceeeeeehcccc-ccccchhhhcccchhhHHHhhHHhhhhccccccccccc-chhhhhhHHHHHHHHHHhhhcee
Confidence            99999999999999995 67778899999999779999999999999999876521 23456666777777779999999


Q ss_pred             HHHHHhhCCChHHHHHHHHHhhhhhHHHHHHHHHhhcccccChhhHHHHHHHHHHHHhhhhHHHHHhhh
Q 038269          355 VICGLMLGFHWPESVSLGLLLSAKGHFYIFLAIMGAVHNYITHTTAASLVIMIFFTIVHTPFVVQNIIG  423 (792)
Q Consensus       355 ~l~~~~~~~~~re~~~lg~~l~~kG~v~l~l~~~~~~~~~i~~~~~~~lv~~~vl~~~~~~~li~~l~~  423 (792)
                      ++.+++.|.++||+..+|+.+++||+++++++..+.+.+.++++.+++++.++++|+++.|+.++.+.+
T Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~la~~~~~~~~~~~~~~~~~~~~vl~t~ii~~~~~~~l~~  379 (380)
T PF00999_consen  311 YLASRLFGIPWKEALFIGLGMLPRGEVSLALALIALNLGIISEQMFTIIIAAVLLTIIIAGIILSPLLR  379 (380)
T ss_dssp             ------------HHHHTTTTSS--HHHHHHHHHHHHH--------------------------------
T ss_pred             ehhhhhcccccchhHHHHHhhcCccHHHHHHHHHHHhcCCCCHHHHHHheeeeeeHHHHHHHHHHHHhc
Confidence            999999999999999999999999999999999999999999999999999999999999998887654

These proteins are found in organisms across all domains of life. In archaea, bacteria, yeast and plants, these exchangers provide increased salt tolerance by removing sodium in exchanger for extracellular protons. In mammals they participate in the regulation of cell pH, volume, and intracellular sodium concentration, as well as for the reabsorption of NaCl across renal, intestinal, and other epithelia [, , , ]. Human NHE is also involved in heart disease, cell growth and in cell differentiation []. The removal of intracellular protons in exchange for extracellular sodium effectively eliminates excess acid from actively metabolising cells. In mammalian cells, NHE activity is found in both the plasma membrane and inner mitochondrial membrane. To date, nine mammalian isoforms have been identified (designated NHE1-NHE9) [, ]. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N terminus and a large cytoplasmic region at the C terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family. There is some evidence that the exchangers may exist in the cell membrane as homodimers, but little is currently known about the mechanism of their antiport []. This entry represents a number of cation/proton exchangers, including Na+/H+ exchangers, K+/H+ exchangers and Na+(K+,Li+,Rb+)/H+ exchangers.; GO: 0015299 solute:hydrogen antiporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2L0E_A 2HTG_A 2KBV_A 2E30_B 1Y4E_A.

>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family

Probab=100.00  E-value=6.5e-34  Score=302.73  Aligned_cols=271  Identities=17%  Similarity=0.259  Sum_probs=227.2

Q ss_pred             HHHHHHHHhHcccCCChhHHHHHHHhhccCccccccccccccHHHHHHHHHHHHHHHHHHHhhccChhhhhcCCcccchH
Q 038269           39 VLTNLAHHLLKPMHQPRITSDIVIGLFLGNIQPIRNGFELEMIQTLNYIVEFGMICYMFVLGLEMDPYVIFKPPTRDAIV  118 (792)
Q Consensus        39 ~~~~~~~~l~~rl~~P~iv~~IlaGillGp~~~~~~lf~~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l~~~~~~~~~i  118 (792)
                      +++.+.+.++||+|+|++++++++|+++||..+.  ..  +..+.++.++++|+++++|.+|+|+|++.+||++|++..+
T Consensus         2 ~~a~~~~~l~~~l~lP~~v~~il~GillGp~~lg--~i--~~~~~~~~l~~igl~~llF~~Gl~~d~~~l~~~~~~~~~~   77 (273)
T TIGR00932         2 LAAVLAVPLSRRLGIPSVLGYLLAGVLIGPSGLG--LI--SNVEGVNHLAEFGVILLMFLIGLELDLERLWKLRKAAFGV   77 (273)
T ss_pred             cHHHHHHHHHHHhCCCHHHHHHHHHHHhCccccc--CC--CChHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence            4677889999999999999999999999997654  33  2456899999999999999999999999999999999999


Q ss_pred             hHHHHHHH-HHHHHHHHHHhhcccchhHHHHHHHHHHHhhccHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHH
Q 038269          119 AYGGMLST-FILGCSLTPFLHYSTHRKIVVAITLSFTLAGSGSHILTRVITNLKIGKSDIGKLGMAAGIHSDMITMLIIC  197 (792)
Q Consensus       119 a~~~~l~p-~~~~~~~~~~l~~~~~~~~~~al~lg~~ls~Ts~~vv~~iL~el~ll~s~~g~l~l~~a~i~Di~~~~ll~  197 (792)
                      +..++++| +++++.++++++.    .+..++++|+++++||++++.++++|+|+.+++.|+++++++++||+++++++.
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~lg~~ls~Ts~~v~~~il~~~~~~~~~~g~l~l~~~~~~D~~~i~~l~  153 (273)
T TIGR00932        78 GVLQVLVPGVLLGLLLGHLLGL----ALGAAVVIGIILALSSTAVVVQVLKERGLLKTPFGQTVLGILLFQDIAVVPLLA  153 (273)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCC----CHHHHHHHHHHHHHhHHHHHHHHHHHcCcccChHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999 7777767766653    234589999999999999999999999999999999999999999999999998


Q ss_pred             HHHHHhcCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhcCCCCcccchhHHHHHHHHHHHHHHhhhhCch
Q 038269          198 IGAVFVLPQGNNTQEQIQSAIKMSASLIFQSVFAAKVSPVFMNWINNENPEGKAMKGTHLVLSLAFMVAVCSCSPFYGYS  277 (792)
Q Consensus       198 i~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~v~r~~~~~i~~~~~~~~~~~e~~~~~il~~~l~~~~~ae~~G~~  277 (792)
                      +.......+....    ..+.+.+...+++.++.+++.++..+|+.++.++.++ +|.++..++.+++..++++|.+|.|
T Consensus       154 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~la~~~g~s  228 (273)
T TIGR00932       154 LLPLLATSASTEH----VALALLLLKVFLAFLLLVLLGRWLLRPVLRLTAELRP-SELFTAGSLLLMFGSAYFADLLGLS  228 (273)
T ss_pred             HHHHHhcCCCcch----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-chHHHHHHHHHHHHHHHHHHHhCCc
Confidence            8876654322111    1233333344445555567788888888887765433 4777888888899999999999999


Q ss_pred             hhHHHHHHhhhcCCCCcchHHHHHHHhHHHHhhhhHHHHHhhccccc
Q 038269          278 PILSAFMAGIFFPSEGRMSKWTVGKVNYLLSTLYYPIFFFWMGFHAK  324 (792)
Q Consensus       278 ~~lgafvaGl~l~~~~~~~~~l~~kl~~~~~~~~~PlfF~~~Gl~~d  324 (792)
                      +++|||++|+++++ .+.++++.++++++. ++|.|+||+++|+++|
T Consensus       229 ~~lgaf~aGl~~~~-~~~~~~l~~~l~~~~-~~f~plFF~~~G~~~~  273 (273)
T TIGR00932       229 MALGAFLAGVVLSE-SEYRHKLESDLEPIG-GVLLPLFFISVGMSVD  273 (273)
T ss_pred             HHHHHHHHHHHHcC-CchHHHHHHHHHhHH-HHHHHHHHHHhCccCC
Confidence            99999999999998 455788999999997 9999999999999987

>COG4651 RosB Kef-type K+ transport system, predicted NAD-binding component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=7.2e-33  Score=277.37  Aligned_cols=377  Identities=16%  Similarity=0.207  Sum_probs=302.7

Q ss_pred             HHHHHHHHHHHHHHHhHcccCCChhHHHHHHHhhccCccccccccccccHHHHHHHHHHHHHHHHHHHhhccChhhhhcC
Q 038269           32 VGLLLAYVLTNLAHHLLKPMHQPRITSDIVIGLFLGNIQPIRNGFELEMIQTLNYIVEFGMICYMFVLGLEMDPYVIFKP  111 (792)
Q Consensus        32 ~~i~lil~~~~~~~~l~~rl~~P~iv~~IlaGillGp~~~~~~lf~~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l~~~  111 (792)
                      -.+..-+.++.+++.++.|+++|+.+||+++|++.||....  +.  .+......++++|++++||-+|++++++++...
T Consensus         9 ~tiv~gl~lAFl~G~lA~rlrlsPLVGyL~AGv~~gpftpG--Fv--ad~~La~~LAelGViLLmFgvGLhfslkdLLav   84 (408)
T COG4651           9 TTIVGGLVLAFLLGALANRLRLSPLVGYLLAGVLAGPFTPG--FV--ADQTLAPELAELGVILLMFGVGLHFSLKDLLAV   84 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHhcCCCCCC--cc--cchhHHHHHHHhhHHHHHHhcchheeHHHHhhH
Confidence            34445567788999999999999999999999999997544  22  345555689999999999999999999999877


Q ss_pred             CcccchHhHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHhhccHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHH
Q 038269          112 PTRDAIVAYGGMLSTFILGCSLTPFLHYSTHRKIVVAITLSFTLAGSGSHILTRVITNLKIGKSDIGKLGMAAGIHSDMI  191 (792)
Q Consensus       112 ~~~~~~ia~~~~l~p~~~~~~~~~~l~~~~~~~~~~al~lg~~ls~Ts~~vv~~iL~el~ll~s~~g~l~l~~a~i~Di~  191 (792)
                      ...++.-++.++.+....|..+.+.++++..    ..+.+|.++|..|..|..|.++|.++.+++-||++++--+++|+.
T Consensus        85 k~iAipgAl~qia~at~lg~gL~~~lgws~~----~glvfGlaLS~aSTVvllraLqEr~lidt~rG~iAiGwLiveDl~  160 (408)
T COG4651          85 KAIAIPGALAQIALATLLGMGLSSLLGWSFG----TGIVFGLALSVASTVVLLRALEERQLIDTQRGRIAIGWLIVEDLA  160 (408)
T ss_pred             HHHhcchHHHHHHHHHHHHhHHHHHcCCCcc----cceeeeehhhhHHHHHHHHHHHHhccccccCceEEEeehhHHHHH
Confidence            6666666777777777777777777775433    368889999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCC--CCc-hhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhcCCCCcccchhHHHHHHHHHHHH
Q 038269          192 TMLIICIGAVFVLPQG--NNT-QEQIQSAIKMSASLIFQSVFAAKVSPVFMNWINNENPEGKAMKGTHLVLSLAFMVAVC  268 (792)
Q Consensus       192 ~~~ll~i~~~~~~~~~--~~~-~~~~~~~l~~~~~~i~~~~~~~~v~r~~~~~i~~~~~~~~~~~e~~~~~il~~~l~~~  268 (792)
                      .++.+....+++..-+  +.. +.......+.......|+.++.++.|....|+..+..... .+|.+...+++++++.+
T Consensus       161 mVl~Lvllpa~a~~~g~~~~~~~~~~~~l~~Tl~Kv~af~alml~VgrrviPw~le~~a~tG-srElf~L~vla~ALgVa  239 (408)
T COG4651         161 MVLALVLLPALAGVLGQGDVGFATLLVDLGITLGKVAAFIAIMLVVGRRLIPWILERVAATG-SRELFTLAVLAIALGVA  239 (408)
T ss_pred             HHHHHHHhHHHHhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-cHHHHHHHHHHHHHHHh
Confidence            9888877766543221  111 1111223445557788999999999999999988763221 36888888899998887


Q ss_pred             H-HhhhhCchhhHHHHHHhhhcCCCCcchHHHHHHHhHHHHhhhhHHHHHhhcccccccccccccchhHHHHHHHHHHHH
Q 038269          269 S-CSPFYGYSPILSAFMAGIFFPSEGRMSKWTVGKVNYLLSTLYYPIFFFWMGFHAKLFTFEADTLGTWGRFFFLIVIST  347 (792)
Q Consensus       269 ~-~ae~~G~~~~lgafvaGl~l~~~~~~~~~l~~kl~~~~~~~~~PlfF~~~Gl~~d~~~l~~~~~~~~~~~~~li~~~~  347 (792)
                      + .++.+|+++.+|||++|+++++ +..+++..+..-++ ++.|.-+||+.+||..|+..+. +   ....++...++..
T Consensus       240 ~Ga~~LfgvsfaLGAffaGMvL~e-selshraa~~slpL-rdaFaVlFFvsVGmlf~P~~l~-~---~pl~vlatllii~  313 (408)
T COG4651         240 FGAAELFGVSFALGAFFAGMVLAE-SELSHRAAEDSLPL-RDAFAVLFFVSVGMLFDPMILI-Q---QPLAVLATLLIIL  313 (408)
T ss_pred             hccceeeccchhHHHHHHHHHhcc-hhhhHHHHHhccCH-HHHHHHHHHHHhhhhcCcHHhh-c---chHHHHHHHHHHH
Confidence            7 5678999999999999999997 67777777777776 8999999999999999986552 2   2233455566778


Q ss_pred             hhhHHHHHHHHHhhCCChHHHHHHHHHhhhhhHHHHHHHHHhhcccccChhhHHHHHHHHHHHHhhhhHHHHHhhh
Q 038269          348 AGKVVGTVICGLMLGFHWPESVSLGLLLSAKGHFYIFLAIMGAVHNYITHTTAASLVIMIFFTIVHTPFVVQNIIG  423 (792)
Q Consensus       348 ~~K~l~~~l~~~~~~~~~re~~~lg~~l~~kG~v~l~l~~~~~~~~~i~~~~~~~lv~~~vl~~~~~~~li~~l~~  423 (792)
                      .+|-+..+...+.+|.|.|.++.++..+.+.|+++++++..+.+.+++++.--..++...+++.+..|.+....-+
T Consensus       314 ~gKs~aaf~ivr~Fg~~~~TaLtis~SLaqigEFsfIlaGLgi~l~llp~~gr~LvlagailsIl~nPllf~~~dr  389 (408)
T COG4651         314 FGKSVAAFFIVRAFGHPVRTALTISASLAQIGEFSFILAGLGIKLNLLPEAGRDLVLAGAILSILLNPLLFALLDR  389 (408)
T ss_pred             hhhHHHHHHHHHHhCCcchHHHHHHHHHHhhhhHHHHHHHHhhhhccCcHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence            8999999999999999999999999999999999999999999999999777776666667766666666665443

>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form

Probab=99.97  E-value=5.1e-28  Score=278.12  Aligned_cols=370  Identities=14%  Similarity=0.111  Sum_probs=254.6

Q ss_pred             HHHHHHHHHHHhHcccCCChhHHHHHHHhhccCccccccccccccHHHHHHHHHHHHHHHHHHHhhccChhhhhcCCccc
Q 038269           36 LAYVLTNLAHHLLKPMHQPRITSDIVIGLFLGNIQPIRNGFELEMIQTLNYIVEFGMICYMFVLGLEMDPYVIFKPPTRD  115 (792)
Q Consensus        36 lil~~~~~~~~l~~rl~~P~iv~~IlaGillGp~~~~~~lf~~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l~~~~~~~  115 (792)
                      .+++.+.....+++|+++|.+++++++|+++||.+.... ++.+ .   +.+..+++.+++|..|+++|++.+|++++.+
T Consensus         5 ~l~~~~~~~~~l~~r~~lP~~v~lil~Gi~lg~~~~~~~-~~~~-~---~~~~~~~Lp~lLF~~g~~~~~~~l~~~~~~i   79 (525)
T TIGR00831         5 ELVMLATAVAVTVKFIRLPYPIALILAGLLLGLAGLLPE-VPLD-R---EIVLFLFLPPLLFEAAMNTDLRELRENFRPI   79 (525)
T ss_pred             HHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHhccccCC-CCCC-H---HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            344555667889999999999999999999998654321 1111 1   2344578999999999999999999999999


Q ss_pred             chHhHHHHHHHHHHHHHHHHH-hhcccchhHHHHHHHHHHHhhccHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHH
Q 038269          116 AIVAYGGMLSTFILGCSLTPF-LHYSTHRKIVVAITLSFTLAGSGSHILTRVITNLKIGKSDIGKLGMAAGIHSDMITML  194 (792)
Q Consensus       116 ~~ia~~~~l~p~~~~~~~~~~-l~~~~~~~~~~al~lg~~ls~Ts~~vv~~iL~el~ll~s~~g~l~l~~a~i~Di~~~~  194 (792)
                      ..+++.++++|++++..+.++ .+    .++..++++|+++|+||++++.+++++.+ .++++.+++.++|++||..+++
T Consensus        80 ~~la~~~vlit~~~v~~~~~~~~~----l~~~~alllGails~TDpvav~~il~~~~-~p~rl~~il~gESllND~~alv  154 (525)
T TIGR00831        80 ALIAFLLVVVTTVVVGFSLNWILG----IPLALALILGAVLSPTDAVAVLGTFKSIR-APKKLSILLEGESLLNDGAALV  154 (525)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhc----ccHHHHHHHHHHhCCCCHHHHHHHHhcCC-CCHHHHHHHhhhhhhcchHHHH
Confidence            999999999988876555443 33    24567999999999999999999999987 5889999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhcCCCCcccchhHHHHHHHHHHHHHHhhhh
Q 038269          195 IICIGAVFVLPQGNNTQEQIQSAIKMSASLIFQSVFAAKVSPVFMNWINNENPEGKAMKGTHLVLSLAFMVAVCSCSPFY  274 (792)
Q Consensus       195 ll~i~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~v~r~~~~~i~~~~~~~~~~~e~~~~~il~~~l~~~~~ae~~  274 (792)
                      ++.++..+..+.+....   ......++..++.+++.++++..+..|+.++..+.   +.....+++++++++++++|.+
T Consensus       155 lf~~~~~~~~~~~~~~~---~~~~~~f~~~~~~gi~vG~~~g~~~~~l~~~~~~~---~~~~~~l~l~~~~~~y~lAe~l  228 (525)
T TIGR00831       155 VFAIAVAVALGKGVFDP---LNAALDFAVVCVGGIAAGLAVGYLAYRLLRAKIDD---PLVEIALTILAPFAGFLLAERF  228 (525)
T ss_pred             HHHHHHHHHhcCCCCcH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---cHHHHHHHHHHHHHHHHHHHHh
Confidence            99888776653222211   11122222222222233333334444454433222   2345678888899999999999


Q ss_pred             CchhhHHHHHHhhhcCCCCcc---hHHH---HHHHhHHHHhhhhHHHHHhhccccccccccccc-ch------hHHH---
Q 038269          275 GYSPILSAFMAGIFFPSEGRM---SKWT---VGKVNYLLSTLYYPIFFFWMGFHAKLFTFEADT-LG------TWGR---  338 (792)
Q Consensus       275 G~~~~lgafvaGl~l~~~~~~---~~~l---~~kl~~~~~~~~~PlfF~~~Gl~~d~~~l~~~~-~~------~~~~---  338 (792)
                      |.|+++++|++|+++++..+.   ..+.   .+.+-.....++.+++|+++|++++........ ..      .+..   
T Consensus       229 g~SgilAvv~aGl~l~~~~~~~~~~~~~~~~~~~fw~~l~~ll~~~iFvllGl~l~~~~~~~~~~~~~~~~~~~~~~~~~  308 (525)
T TIGR00831       229 HFSGVIAVVAAGLILTNYGRDFSMSPTTRLIALDFWSVIVFLVNGIIFILIGVQTPGTIFSAWKEILVAPAAVILALFTN  308 (525)
T ss_pred             CCCHHHHHHHHHHHHccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHH
Confidence            999999999999999975432   1121   223333457889999999999998741111000 00      0110   


Q ss_pred             HHHHHHHHHhhhHHHHHHHH--Hh-----hCCChHHHHHHHHHhhhhhHHHHHHHHHhhc----------ccccChhhHH
Q 038269          339 FFFLIVISTAGKVVGTVICG--LM-----LGFHWPESVSLGLLLSAKGHFYIFLAIMGAV----------HNYITHTTAA  401 (792)
Q Consensus       339 ~~~li~~~~~~K~l~~~l~~--~~-----~~~~~re~~~lg~~l~~kG~v~l~l~~~~~~----------~~~i~~~~~~  401 (792)
                      .+++.......|++.++...  +.     .+++|||.+.++| .++||.++++++.....          +..+-.-++.
T Consensus       309 ~~~i~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~r~~~v~~w-~G~RG~vslA~al~~p~~~~~g~~~p~r~~i~~~~~~  387 (525)
T TIGR00831       309 AFVIYPVMTYVRFLWTMKPFSNRFLKKKPMEFGTRWKHVVSW-AGLRGAIPLALALSFPNQLLSGMAFPARYELVFLAAG  387 (525)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCChhhHHHhee-ccchHHHHHHHHHHccccccCCCCCchHHHHHHHHHH
Confidence            11222233445655443321  11     2578999999999 79999999998864321          2234445577


Q ss_pred             HHHHHHHHHHhhhhHHHHHhh
Q 038269          402 SLVIMIFFTIVHTPFVVQNII  422 (792)
Q Consensus       402 ~lv~~~vl~~~~~~~li~~l~  422 (792)
                      ++++++++++.+.|+++|++-
T Consensus       388 vVl~TllvqG~tlp~l~r~l~  408 (525)
T TIGR00831       388 VILFSLLVQGISLPIFVKRKF  408 (525)
T ss_pred             HHHHHHHHHHhhHHHHHHhcC
Confidence            788888888889999988764

This model is specific for the bacterial members of this family.

>TIGR00844 c_cpa1 na(+)/h(+) antiporter

Probab=99.96  E-value=5e-27  Score=270.14  Aligned_cols=355  Identities=12%  Similarity=0.140  Sum_probs=259.0

Q ss_pred             HHHHHHH-HHHHHHHHHhHcccCCChhHHHHHHHhhccCcccccccccccc----HHHHHHHHHHHHHHHHHHHhhccCh
Q 038269           31 IVGLLLA-YVLTNLAHHLLKPMHQPRITSDIVIGLFLGNIQPIRNGFELEM----IQTLNYIVEFGMICYMFVLGLEMDP  105 (792)
Q Consensus        31 l~~i~li-l~~~~~~~~l~~rl~~P~iv~~IlaGillGp~~~~~~lf~~~~----~~~l~~l~~lgl~~llF~~Gle~d~  105 (792)
                      ++-++.. ++++.+..++.+|+.+|.++.++++|+++||.++.  ++++..    ......++++++++.+|.+|++++.
T Consensus        15 ~~~lG~~lll~~l~s~~lkeRl~Ls~~~v~Ll~GiilGP~~l~--~idP~~~g~~d~i~leIteIvL~I~LFa~Gl~L~~   92 (810)
T TIGR00844        15 YSCVGIFSSIFSLVSLFVKEKLYIGESMVASIFGLIVGPHCLN--WFNPLSWGNTDSITLEISRILLCLQVFAVSVELPR   92 (810)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHhhhhhhc--cCChhhcccchHHHHHHHHHHHHHHHHHHHHhCCH
Confidence            3334443 44444455555599999999999999999998765  443221    2333339999999999999999999


Q ss_pred             hhhhcCCcccchHhHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHhhccHHHHHHHHH---hcCCCCCchhHHHH
Q 038269          106 YVIFKPPTRDAIVAYGGMLSTFILGCSLTPFLHYSTHRKIVVAITLSFTLAGSGSHILTRVIT---NLKIGKSDIGKLGM  182 (792)
Q Consensus       106 ~~l~~~~~~~~~ia~~~~l~p~~~~~~~~~~l~~~~~~~~~~al~lg~~ls~Ts~~vv~~iL~---el~ll~s~~g~l~l  182 (792)
                      +.+|+.|+..+.++..++.+++++++++.+++-.  +..+..++++|+++++|++.....+++   ..+ ++.++..++.
T Consensus        93 ~~Lrr~wrsV~rLl~~~M~lT~livAL~a~~Li~--GL~~~~ALLLGAILAPTDPVLAssV~kg~~~~r-vP~rLR~lL~  169 (810)
T TIGR00844        93 KYMLKHWVSVTMLLVPVMTSGWLVIALFVWILVP--GLNFPASLLMGACITATDPVLAQSVVSGTFAQK-VPGHLRNLLS  169 (810)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHc--CCCHHHHHHHHhhhcCCcHHHHHHHHhcccccc-CChHHHhHHh
Confidence            9999999999999999999998888777665421  123566899999999999766666665   223 6789999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCC---CCc-hhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhcCCCCcccchhHH
Q 038269          183 AAGIHSDMITMLIICIGAVFVLPQG---NNT-QEQIQSAIKMSASLIFQSVFAAKVSPVFMNWINNENPEGKAMKGTHLV  258 (792)
Q Consensus       183 ~~a~i~Di~~~~ll~i~~~~~~~~~---~~~-~~~~~~~l~~~~~~i~~~~~~~~v~r~~~~~i~~~~~~~~~~~e~~~~  258 (792)
                      +++.+||.++++++.+++.+...+.   ... ......++|.++..++++++++++.+++..|+.+|....   .+.++.
T Consensus       170 ~ESGlNDGlAfpfv~LaL~ll~~~~~g~~~~~~w~l~~~L~~i~~GiliG~vvG~l~~~Ll~~l~rr~~i~---~esfla  246 (810)
T TIGR00844       170 CESGCNDGLAFPFVFLSMDLLLYPGRGGEIVKDWICVTILWECIFGSILGCIIGYCGRKAIRFAEGKNIID---RESFLA  246 (810)
T ss_pred             hhhhcccHHHHHHHHHHHHHHhccCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc---hhHHHH
Confidence            9999999999987766554443211   111 011234556666666666777777777777776554321   345566


Q ss_pred             HHHHHHHHHHHHhhhhCchhhHHHHHHhhhcCCCCcchHH-HHHHHhHHHHhhhhHHHHHhhcccccccccccc--cchh
Q 038269          259 LSLAFMVAVCSCSPFYGYSPILSAFMAGIFFPSEGRMSKW-TVGKVNYLLSTLYYPIFFFWMGFHAKLFTFEAD--TLGT  335 (792)
Q Consensus       259 ~il~~~l~~~~~ae~~G~~~~lgafvaGl~l~~~~~~~~~-l~~kl~~~~~~~~~PlfF~~~Gl~~d~~~l~~~--~~~~  335 (792)
                      +.++++++++.+++.+|.++++++|++|+++.+...+... -...+......++..++|+++|+.+....+...  ....
T Consensus       247 ~~LaLAli~~gla~lLggSGfLAVFVAGl~~gn~~~~~~~~~~~~f~e~ie~LLn~~lFVlLGa~L~~~~l~~~~l~~~~  326 (810)
T TIGR00844       247 FYLILALTCAGFGSMLGVDDLLVSFFAGTAFAWDGWFAQKTHESNVSNVIDVLLNYAYFVYLGSILPWKDFNNGDIGLDV  326 (810)
T ss_pred             HHHHHHHHHHHHHHHhccccHHHHHHHHHHHhcccchhhhHHHhhHHHHHHHHHHHHHHHHHHHhhCHhhcccchhhHHH
Confidence            7777888888899999999999999999999985443322 123355556788999999999999986544210  1134


Q ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHhh--CCChHHHHHHHHHhhhhhHHHHHHHHHhhcccc
Q 038269          336 WGRFFFLIVISTAGKVVGTVICGLML--GFHWPESVSLGLLLSAKGHFYIFLAIMGAVHNY  394 (792)
Q Consensus       336 ~~~~~~li~~~~~~K~l~~~l~~~~~--~~~~re~~~lg~~l~~kG~v~l~l~~~~~~~~~  394 (792)
                      |..+++.+++.++.|+.++++...+.  ..+|+|++++|| .++||+.++.++..+.+.+.
T Consensus       327 w~~ilLaL~LifVrRPpaVlll~~li~~~~s~rErlFigW-FGpRGIGSIyyl~~A~~~~~  386 (810)
T TIGR00844       327 WRLIILSLVVIFLRRIPAVLILKPLIPDIKSWREAMFIGH-FGPIGVGAVFAAILSKSQLE  386 (810)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhcccCCCHHHHHHhee-eccccHHHHHHHHHHHHhhh
Confidence            66666667778888988888764443  468999999999 89999999999999877654

This model is specific for the fungal members of this family.

>COG0025 NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]

Probab=99.95  E-value=4.5e-25  Score=246.90  Aligned_cols=383  Identities=14%  Similarity=0.122  Sum_probs=294.7

Q ss_pred             HHHHHHHHHHHHHHHHHHhHcccCCChhHHHHHHHhhccCccccccccccccHHHHHHHHHHHHHHHHHHHhhccChhhh
Q 038269           29 GKIVGLLLAYVLTNLAHHLLKPMHQPRITSDIVIGLFLGNIQPIRNGFELEMIQTLNYIVEFGMICYMFVLGLEMDPYVI  108 (792)
Q Consensus        29 ~~l~~i~lil~~~~~~~~l~~rl~~P~iv~~IlaGillGp~~~~~~lf~~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l  108 (792)
                      ..++++.+++.++.+...+.+|+..|.+..+++.|++.||..+.  .+++.....-+.+..+.+..++|..|+++|.+.+
T Consensus         6 ~~~~~~~lil~l~~~~~~~~~~l~~~~i~~~ll~g~i~g~~~l~--~~~~~~~~~~el~~~l~l~ilLf~~g~~l~~~~l   83 (429)
T COG0025           6 MLLFLLLLILLLGLLVSVLAGRLLLPEIPLLLLLGLLGGPPGLN--LISPDLELDPELFLVLFLAILLFAGGLELDLREL   83 (429)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhhhhc--cccccccCChHHHHHHHHHHHHHHhHhcCCHHHH
Confidence            45778888888999999999999999999999999999986554  2322222223333489999999999999999999


Q ss_pred             hcCCcccchHhHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHhhccHHHHHHHHHhcCCCCCchhHHHHHHHHHH
Q 038269          109 FKPPTRDAIVAYGGMLSTFILGCSLTPFLHYSTHRKIVVAITLSFTLAGSGSHILTRVITNLKIGKSDIGKLGMAAGIHS  188 (792)
Q Consensus       109 ~~~~~~~~~ia~~~~l~p~~~~~~~~~~l~~~~~~~~~~al~lg~~ls~Ts~~vv~~iL~el~ll~s~~g~l~l~~a~i~  188 (792)
                      ||+++....++..+++++.+....+.+++ .+ ..++..++.+|+++|+|++.++.++.++.| .++++.++..++|++|
T Consensus        84 ~~~~~~I~~La~~~v~it~~~~g~~~~~l-~~-~i~~~~a~l~gAilspTDPv~v~~i~~~~~-vp~ri~~iL~gESl~N  160 (429)
T COG0025          84 RRVWRSILVLALPLVLITALGIGLLAHWL-LP-GIPLAAAFLLGAILSPTDPVAVSPIFKRVR-VPKRIRTILEGESLLN  160 (429)
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHH-hC-ChhHHHHHHHhHHhcCCCchhhHHHHhcCC-CCHHHHHHHHHHHHhh
Confidence            99999999999999999876655555555 23 345667999999999999999999998866 7999999999999999


Q ss_pred             HHHHHHHHHHHHHHhcCCCCCc-hhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhcCCCCcccchhHHHHHHHHHHH
Q 038269          189 DMITMLIICIGAVFVLPQGNNT-QEQIQSAIKMSASLIFQSVFAAKVSPVFMNWINNENPEGKAMKGTHLVLSLAFMVAV  267 (792)
Q Consensus       189 Di~~~~ll~i~~~~~~~~~~~~-~~~~~~~l~~~~~~i~~~~~~~~v~r~~~~~i~~~~~~~~~~~e~~~~~il~~~l~~  267 (792)
                      |..+++++.+.......++..+ .......++..+..++.+++.+++.+++.+++.+|.-..   ...+..+.+...+..
T Consensus       161 D~~giv~f~~~l~~~~~~~~~~~~~~~~~fl~~~~~g~~~G~~iG~l~~~l~~~~~~~~~~~---~~~~~~i~L~~~~~~  237 (429)
T COG0025         161 DGVGIVLFKVALAALLGTGAFSLGWALLLFLIEALGGILLGLLLGYLLGRLLRRLDRRGWTS---PLLETLLTLLLAFAA  237 (429)
T ss_pred             hHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc---hHHHHHHHHHHHHHH
Confidence            9999999998887776443321 122234555555566666777777777887777654211   345678888999999


Q ss_pred             HHHhhhhCchhhHHHHHHhhhcC---C--CCcch-HHHHHHHhHHHHhhhhHHHHHhhcccccccccccccchhHHHHHH
Q 038269          268 CSCSPFYGYSPILSAFMAGIFFP---S--EGRMS-KWTVGKVNYLLSTLYYPIFFFWMGFHAKLFTFEADTLGTWGRFFF  341 (792)
Q Consensus       268 ~~~ae~~G~~~~lgafvaGl~l~---~--~~~~~-~~l~~kl~~~~~~~~~PlfF~~~Gl~~d~~~l~~~~~~~~~~~~~  341 (792)
                      +.++|.+|.|++++++++|+...   .  ..+.. +...+.+......++.-+.|++.|++++...+..   ..+..+++
T Consensus       238 ~~~a~~l~~SGilAvvvaG~~~~~~~~~~~~~~~~~~~~~~fwe~l~~~ln~~iFiLlG~~i~~~~~~~---~~~~~~l~  314 (429)
T COG0025         238 YLLAEALGVSGILAVVVAGLVLGEAVRINLSPASARLRLSSFWEVLDFLLNGLLFVLLGAQLPLSLLLA---LGLLGLLV  314 (429)
T ss_pred             HHHHHHhCcchHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH---hhHHHHHH
Confidence            99999999999999999998774   1  11212 2233334455588899999999999999865531   12566777


Q ss_pred             HHHHHHhhhHHHHHHHHHhh------CCChHHHHHHHHHhhhhhHHHHHHHHHhhc------ccccChhhHHHHHHHHHH
Q 038269          342 LIVISTAGKVVGTVICGLML------GFHWPESVSLGLLLSAKGHFYIFLAIMGAV------HNYITHTTAASLVIMIFF  409 (792)
Q Consensus       342 li~~~~~~K~l~~~l~~~~~------~~~~re~~~lg~~l~~kG~v~l~l~~~~~~------~~~i~~~~~~~lv~~~vl  409 (792)
                      .++..+++|++++++..+..      ..+|+|+++++| -++||.++++++.....      +..+..-.+.+++.++++
T Consensus       315 ~~~~~~v~R~~~V~~~~~~~~~~~~~~~~~~~~~~l~w-~G~RG~vsla~al~~p~~~~~~~~~~i~~i~~~vIl~Sl~v  393 (429)
T COG0025         315 ALVAVLLARPLWVFLSLKGSNLKLRDPLPWRERLFLSW-AGPRGVVSLALALLIPLELPGPARELILFIVFLVILFSLLV  393 (429)
T ss_pred             HHHHHHHHHHHHHHHHHhhccccccCCCCHHHHHHHhh-cccccHHHHHHHHHchhhccchhhhHHHHHHHHHHHHHHHH
Confidence            78888999999999988874      379999999999 79999999999987652      223444556777778888


Q ss_pred             HHhhhhHHHHHhhh
Q 038269          410 TIVHTPFVVQNIIG  423 (792)
Q Consensus       410 ~~~~~~~li~~l~~  423 (792)
                      .++..|++.++...
T Consensus       394 ~g~t~~~l~~~~~~  407 (429)
T COG0025         394 QGLTLPPLAKKLEV  407 (429)
T ss_pred             HhhhHHHHHHHhcc
Confidence            88888888887543

>TIGR00840 b_cpa1 sodium/hydrogen exchanger 3

Probab=99.93  E-value=8.3e-24  Score=243.04  Aligned_cols=388  Identities=13%  Similarity=0.120  Sum_probs=259.6

Q ss_pred             chHHHHHHHHHHHHHHHHHHHhH-ccc-CCChhHHHHHHHhhccCccccccccccccHHHHHHHHHHHHHHHHHHHhhcc
Q 038269           26 DGSGKIVGLLLAYVLTNLAHHLL-KPM-HQPRITSDIVIGLFLGNIQPIRNGFELEMIQTLNYIVEFGMICYMFVLGLEM  103 (792)
Q Consensus        26 ~lp~~l~~i~lil~~~~~~~~l~-~rl-~~P~iv~~IlaGillGp~~~~~~lf~~~~~~~l~~l~~lgl~~llF~~Gle~  103 (792)
                      ..|..+.-..++..++.+...+. |+. ++|..+..++.|+++|+........+.. .-.-+.+-.+.+..++|..|+++
T Consensus         6 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~lP~s~llil~GlllG~i~~~~~~~~~~-~l~~~lf~~~~LPpIlFe~g~~l   84 (559)
T TIGR00840         6 QSPYEFILWILLASLAKIGFHLTHKVIRAVPESVLLIVYGLLVGGIIKASPHIDPP-TLDSSYFFLYLLPPIVLDAGYFM   84 (559)
T ss_pred             hchHHHHHHHHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHHHcCCCCccC-CcCHHHHHHHHHHHHHHHHHhcC
Confidence            34544444444444444444444 444 4999999999999999752110001100 01114455567788999999999


Q ss_pred             ChhhhhcCCcccchHhHHHHHHHHHHH-HHHHHHhh---cc-cchhHHHHHHHHHHHhhccHHHHHHHHHhcCCCCCchh
Q 038269          104 DPYVIFKPPTRDAIVAYGGMLSTFILG-CSLTPFLH---YS-THRKIVVAITLSFTLAGSGSHILTRVITNLKIGKSDIG  178 (792)
Q Consensus       104 d~~~l~~~~~~~~~ia~~~~l~p~~~~-~~~~~~l~---~~-~~~~~~~al~lg~~ls~Ts~~vv~~iL~el~ll~s~~g  178 (792)
                      |.+.++++.+.++.+|+.|++++.++. ..++++..   .. ...++..++++|+++|+||+..+..++++.+ .+.++-
T Consensus        85 ~~~~f~~n~~~Il~lAv~Gvlit~~~ig~~l~~~~~~~~~~~~~l~~~~allfGAiiSaTDPVAVlai~~~~~-v~~~L~  163 (559)
T TIGR00840        85 PQRNFFENLGSILIFAVVGTLINAFVIGLSLYGICLIGGFGSIDIGLLDNLLFGSLISAVDPVAVLAVFEEYH-VNEKLY  163 (559)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCHHHHHHHhHHhcCCchHHHHHHHHhcC-CCcchh
Confidence            999999999999999999999976554 44443322   11 1235677999999999999999999999988 689999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCCchhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhcCCCCcccchhH
Q 038269          179 KLGMAAGIHSDMITMLIICIGAVFVLPQ-GNNTQEQIQSAIKMSASLIFQSVFAAKVSPVFMNWINNENPEGKAMKGTHL  257 (792)
Q Consensus       179 ~l~l~~a~i~Di~~~~ll~i~~~~~~~~-~~~~~~~~~~~l~~~~~~i~~~~~~~~v~r~~~~~i~~~~~~~~~~~e~~~  257 (792)
                      +++.++|++||..+++++.++..+...+ ..............++...+.+++.+++...+..++.++....   +..+.
T Consensus       164 ~ll~gESllNDavaIVLf~~~~~~~~~~~~~~~~~~~~~~i~~f~~~~~GGiliG~v~G~l~~~l~r~~~~~---~~~e~  240 (559)
T TIGR00840       164 IIIFGESLLNDAVTVVLYNTFIKFHKTADEPVTIVDVFEGCASFFVVTCGGLLVGVVFGFLVAFITRFTHHI---RQIEP  240 (559)
T ss_pred             hheehhhhhhccHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---chhHH
Confidence            9999999999999999998887765422 1211110011111111111113333344445555555554332   23456


Q ss_pred             HHHHHHHHHHHHHhhhhCchhhHHHHHHhhhcCCC-----CcchHHHHHHHhHHHHhhhhHHHHHhhccccccccccccc
Q 038269          258 VLSLAFMVAVCSCSPFYGYSPILSAFMAGIFFPSE-----GRMSKWTVGKVNYLLSTLYYPIFFFWMGFHAKLFTFEADT  332 (792)
Q Consensus       258 ~~il~~~l~~~~~ae~~G~~~~lgafvaGl~l~~~-----~~~~~~l~~kl~~~~~~~~~PlfF~~~Gl~~d~~~l~~~~  332 (792)
                      .++++++++++.++|.+|.|++++++++|+++.+.     ++..+.-.+.+......++..+.|+++|+.+.....   .
T Consensus       241 ~l~l~~~yl~Y~lAE~l~~SGiLAvv~aGl~~~~y~~~n~s~~~~~~~~~f~~~ls~l~e~~IFvlLGl~l~~~~~---~  317 (559)
T TIGR00840       241 LFVFLISYLSYLFAETLHLSGILALIFCGITMKKYVEANMSRRSQTTIKYFMKMLSSLSETLIFIFLGVSLVTENH---E  317 (559)
T ss_pred             HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchh---h
Confidence            77888889999999999999999999999999642     222222223343445778899999999997632211   1


Q ss_pred             chhHHHHHHHHHHHHhhhHHHHHHHHHh------hCCChHHHHHHHHHhhhhhHHHHHHHHHhhcc-----cccChhhHH
Q 038269          333 LGTWGRFFFLIVISTAGKVVGTVICGLM------LGFHWPESVSLGLLLSAKGHFYIFLAIMGAVH-----NYITHTTAA  401 (792)
Q Consensus       333 ~~~~~~~~~li~~~~~~K~l~~~l~~~~------~~~~~re~~~lg~~l~~kG~v~l~l~~~~~~~-----~~i~~~~~~  401 (792)
                      + .|..+++.+++.++.|+++++..++.      .+++++|.+.++| .+.||.++++++....+.     +.+-..++.
T Consensus       318 ~-~~~~i~~~l~~~ll~R~l~V~~~~~~~~~~~~~~~~~~e~~il~w-~GlRGaVa~aLAl~l~~~~~~~~~~i~~~t~~  395 (559)
T TIGR00840       318 W-NWAFVVATLSFCVIYRVLGVRTLSWITNEFRPVEIPYKDQLVIFY-AGLRGAVAFALALLLDEKIFPYKFLFVTTTLV  395 (559)
T ss_pred             H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChhhhhheee-eccccHHHHHHHHhCCCCCcchHHHHHHHHHe
Confidence            1 34444555566778999998876653      3579999999999 799999999998765433     233334455


Q ss_pred             HHHHHHHHHHhhhhHHHHHhhh
Q 038269          402 SLVIMIFFTIVHTPFVVQNIIG  423 (792)
Q Consensus       402 ~lv~~~vl~~~~~~~li~~l~~  423 (792)
                      +++++++++..+.+|+++++.-
T Consensus       396 VVl~TvlvqG~T~~pl~~~L~l  417 (559)
T TIGR00840       396 VVFFTVIFQGGTIKPLVEVLKV  417 (559)
T ss_pred             eehHHHHHHHhhHHHHHHHhCC
Confidence            6667788888888999988754

This model is specific for the eukaryotic members members of this family.

>COG3263 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain [Inorganic ion transport and metabolism]

Probab=99.91  E-value=1.5e-22  Score=213.02  Aligned_cols=373  Identities=11%  Similarity=0.064  Sum_probs=287.6

Q ss_pred             HHHHHHHHHHHHHHHHHHhHcccCCChhHHHHHHHhhccCccccccccccccHHHHHHHHHHHHHHHHHHHhhccChhhh
Q 038269           29 GKIVGLLLAYVLTNLAHHLLKPMHQPRITSDIVIGLFLGNIQPIRNGFELEMIQTLNYIVEFGMICYMFVLGLEMDPYVI  108 (792)
Q Consensus        29 ~~l~~i~lil~~~~~~~~l~~rl~~P~iv~~IlaGillGp~~~~~~lf~~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l  108 (792)
                      .+++--.+++.++.+.+.++.|+|.|..+-.+..|++.|.-+.+.--|  ++...-..++++++++++|..|+..+++.+
T Consensus         7 ~ill~gsvlvivsif~s~~ssrfGvP~LllFl~iGm~aG~dGlg~I~f--dNy~~Ay~vg~lALaiILfdgG~~T~lss~   84 (574)
T COG3263           7 LILLLGSVLVIVSIFSSLISSRFGVPLLLLFLSIGMLAGVDGLGGIEF--DNYPFAYMVGNLALAIILFDGGFGTQLSSF   84 (574)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHcCCCccccccc--CccHHHHHHHHHHHHHHhhcCccCCcHHHH
Confidence            445555567778888999999999999999999999999877653234  567788899999999999999999999999


Q ss_pred             hcCCcccchHhHHHHHHHHHHHHH-HHHHhhcccchhHHHHHHHHHHHhhccHHHHHHHHHhcCCCCCchhHHHHHHHHH
Q 038269          109 FKPPTRDAIVAYGGMLSTFILGCS-LTPFLHYSTHRKIVVAITLSFTLAGSGSHILTRVITNLKIGKSDIGKLGMAAGIH  187 (792)
Q Consensus       109 ~~~~~~~~~ia~~~~l~p~~~~~~-~~~~l~~~~~~~~~~al~lg~~ls~Ts~~vv~~iL~el~ll~s~~g~l~l~~a~i  187 (792)
                      |...++++.++..|++++..+... .+|.++.    .|-.++++|+++.+|+.+.+..+|.+.+ ++.+++.+..-++.-
T Consensus        85 r~a~~palsLATlGVl~Ts~Ltg~aA~~ll~l----~wle~~LiGAiVgSTDAAAVF~lL~~~n-l~erv~stLEiESGt  159 (574)
T COG3263          85 RVAAGPALSLATLGVLITSGLTGVAAAYLLNL----DWLEGLLIGAIVGSTDAAAVFSLLGGKN-LNERVASTLEIESGS  159 (574)
T ss_pred             HHHhhhhHHHHHHHHHHHHHHHHHHHHHHhcc----HHHHHHHHHHhhccccHHHHHHHHccCC-hhhhhhhhEEeecCC
Confidence            999999999999999997665544 4555543    3455899999999999999999998877 688999999999999


Q ss_pred             HHHHHHHHHHHHHHHhcCC-CCCchhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhcCCCCcccchhHHHHHHHHHH
Q 038269          188 SDMITMLIICIGAVFVLPQ-GNNTQEQIQSAIKMSASLIFQSVFAAKVSPVFMNWINNENPEGKAMKGTHLVLSLAFMVA  266 (792)
Q Consensus       188 ~Di~~~~ll~i~~~~~~~~-~~~~~~~~~~~l~~~~~~i~~~~~~~~v~r~~~~~i~~~~~~~~~~~e~~~~~il~~~l~  266 (792)
                      ||..++++..-++.+...+ ++..+......++    -.+++++.++...++..|+++|+.-+   +..|..++++..+.
T Consensus       160 NDPmAvfLTitlieli~~get~l~~~~ll~f~~----q~glG~l~G~~gg~l~~~~Inr~nLd---~GL~pil~la~~Ll  232 (574)
T COG3263         160 NDPMAVFLTITLIELIAGGETNLSWGFLLGFLQ----QFGLGLLLGLGGGKLLLQLINRINLD---SGLYPILALAGGLL  232 (574)
T ss_pred             CCceeeehhHHHHHHHhccccccCHHHHHHHHH----HhhHHHHHHHHHHHHHHHHHHhhccc---cchhHHHHHHHHHH
Confidence            9999988765555555544 3344332222223    33445555566677778888887321   45788889999999


Q ss_pred             HHHHhhhhCchhhHHHHHHhhhcCCCC-cchHHHHHHHhHHHHhhhhHHHHHhhcccccccccccccchhHHHHHHHHHH
Q 038269          267 VCSCSPFYGYSPILSAFMAGIFFPSEG-RMSKWTVGKVNYLLSTLYYPIFFFWMGFHAKLFTFEADTLGTWGRFFFLIVI  345 (792)
Q Consensus       267 ~~~~ae~~G~~~~lgafvaGl~l~~~~-~~~~~l~~kl~~~~~~~~~PlfF~~~Gl~~d~~~l~~~~~~~~~~~~~li~~  345 (792)
                      .+.+++.+|-|++++.+++|+++.|.+ ..++.+.+..+-+ .++..-+.|...|+..+++++.   +.....+++.+..
T Consensus       233 ~fs~t~aiGGsG~LaVYl~Gll~GN~~i~~r~~I~~f~dG~-twlaQI~MFlvLGLLvtPsql~---~iavPailL~l~m  308 (574)
T COG3263         233 IFSLTGAIGGSGILAVYLAGLLLGNRPIRARHGILRFFDGL-AWLAQILMFLVLGLLVTPSQLL---PIAIPAILLSLWM  308 (574)
T ss_pred             HHHHHHHhcCcccHHHHHHHHHhCCCcchhHHHHHHHhccH-HHHHHHHHHHHHHHhcCHhhhh---HhhHHHHHHHHHH
Confidence            999999999999999999999999854 2345566666665 7888888899999999987663   2345556666778


Q ss_pred             HHhhhHHHHHHHHHhhCCChHHHHHHHHHhhhhhHHHHHHHHHhhcccccChhh-----HHHHHHHHHHHHhhhhHHHHH
Q 038269          346 STAGKVVGTVICGLMLGFHWPESVSLGLLLSAKGHFYIFLAIMGAVHNYITHTT-----AASLVIMIFFTIVHTPFVVQN  420 (792)
Q Consensus       346 ~~~~K~l~~~l~~~~~~~~~re~~~lg~~l~~kG~v~l~l~~~~~~~~~i~~~~-----~~~lv~~~vl~~~~~~~li~~  420 (792)
                      .+++|++++++...=+++++||..+++| .+-||.++++++....-.|.-+.+.     |-++..+.+++..+.|+..++
T Consensus       309 ifvaRP~aV~l~l~Pfrf~~~Ek~fvSW-vGLRGAv~IilAifpm~aglena~l~FNvAF~VVLvSlliQG~tl~~~a~~  387 (574)
T COG3263         309 IFVARPLAVFLGLIPFRFNRREKLFVSW-VGLRGAVPIILAIFPMMAGLENARLFFNVAFFVVLVSLLIQGSTLPWAAKK  387 (574)
T ss_pred             HHHHhHHHHHHhhcccccCccchheeeh-hhcccchhhhHhhhHHhcCCccceEEeehhHHHHHHHHHHccCcchHHHHh
Confidence            8899999999988778999999999999 7999999999998876655544333     333344444444445555444

>KOG1965 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism]

Probab=99.77  E-value=1.1e-17  Score=184.92  Aligned_cols=379  Identities=15%  Similarity=0.132  Sum_probs=258.2

Q ss_pred             HHHHHHHHHHHHHHHHhHcccC---CChhHHHHHHHhhccCcc------ccc---c--ccccccHHHHHHHHHHHHHHHH
Q 038269           31 IVGLLLAYVLTNLAHHLLKPMH---QPRITSDIVIGLFLGNIQ------PIR---N--GFELEMIQTLNYIVEFGMICYM   96 (792)
Q Consensus        31 l~~i~lil~~~~~~~~l~~rl~---~P~iv~~IlaGillGp~~------~~~---~--lf~~~~~~~l~~l~~lgl~~ll   96 (792)
                      ++-.+++++++.+..+++++.|   +|.-+.-++.|+++|-.-      ..+   .  .|   ++   +.+-.+-+-.+.
T Consensus        37 l~~~i~lL~l~iv~~hll~~~R~~~l~Esv~~l~iGl~vG~vi~~~~~~~s~~~~~~~~f---~~---~~ff~vLLPpii  110 (575)
T KOG1965|consen   37 LLFFILLLVLCIVLGHLLEETRFRWLPESVAALFIGLLVGLVIRYSSGGKSSRGKRILVF---SP---DLFFLVLLPPII  110 (575)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhhcCCCcccccceeEEe---cc---cHHHHHhhchhh
Confidence            3344455666778899999888   999999999999999421      110   0  11   11   123334455688


Q ss_pred             HHHhhccChhhhhcCCcccchHhHHHHHHH-HHHHHHHHHHhhc--ccchhHHHHHHHHHHHhhccHHHHHHHHHhcCCC
Q 038269           97 FVLGLEMDPYVIFKPPTRDAIVAYGGMLST-FILGCSLTPFLHY--STHRKIVVAITLSFTLAGSGSHILTRVITNLKIG  173 (792)
Q Consensus        97 F~~Gle~d~~~l~~~~~~~~~ia~~~~l~p-~~~~~~~~~~l~~--~~~~~~~~al~lg~~ls~Ts~~vv~~iL~el~ll  173 (792)
                      |..|.+++.+.++++.......++.|..+. .++|.+++++...  ...+.+..++++|+++|+|+|..+..+++|++ .
T Consensus       111 f~sgy~l~k~~fF~n~~si~~fa~~Gt~IS~~~ig~gv~~~~~~~~~~~~~f~d~L~fGaliSATDPVtvLaIfnel~-v  189 (575)
T KOG1965|consen  111 FNSGYSLKKKQFFRNIGSILLFAIFGTFISAVIIGAGVYLLGFGLLIYDLSFKDCLAFGALISATDPVTVLAIFNELG-V  189 (575)
T ss_pred             hcccceechhhhhhhhHHHHHhhhcceeeehhHHhhHHHHHhcccccccccHHHHHHHhhHhcccCchHHHHHHHHhC-C
Confidence            999999999999999999999999887774 5566666554321  12345667899999999999999999999999 5


Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchh--hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-hhcCCCC
Q 038269          174 KSDIGKLGMAAGIHSDMITMLIICIGAVFVLPQGNNTQE--QIQSAIKMSASLIFQSVFAAKVSPVFMNWIN-NENPEGK  250 (792)
Q Consensus       174 ~s~~g~l~l~~a~i~Di~~~~ll~i~~~~~~~~~~~~~~--~~~~~l~~~~~~i~~~~~~~~v~r~~~~~i~-~~~~~~~  250 (792)
                      +..+-.++-|++++||..+++++..+......+.+....  .....+..+....+.++..+++...+.+.+. +|.    
T Consensus       190 d~~Ly~LVFGESvLNDAvsIVlf~~i~~~~~~~~~~~~~~~~ig~Fl~~F~gS~~lGv~~GlisA~~lK~~~l~~~----  265 (575)
T KOG1965|consen  190 DPKLYTLVFGESVLNDAVSIVLFNTIQKFQLGSLNDWTAFSAIGNFLYTFFGSLGLGVAIGLISALVLKFLYLRRT----  265 (575)
T ss_pred             CcceeeeeecchhccchhHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC----
Confidence            778889999999999999999998887665443221111  1122333333333333333333333333332 222    


Q ss_pred             cccchhHHHHHHHHHHHHHHhhhhCchhhHHHHHHhhhcCCCC-----cchHHHHHHHhHHHHhhhhHHHHHhhcccc-c
Q 038269          251 AMKGTHLVLSLAFMVAVCSCSPFYGYSPILSAFMAGIFFPSEG-----RMSKWTVGKVNYLLSTLYYPIFFFWMGFHA-K  324 (792)
Q Consensus       251 ~~~e~~~~~il~~~l~~~~~ae~~G~~~~lgafvaGl~l~~~~-----~~~~~l~~kl~~~~~~~~~PlfF~~~Gl~~-d  324 (792)
                        +..+..+.+++.+..+++||.+|+++++..+.+|+.+++..     +..+.-.++.-.+...+..-+-|+++|+.+ +
T Consensus       266 --~~lE~al~ll~sY~sY~lAE~~~lSGIvtVlFcGI~msHYt~~NlS~~Sqit~kh~f~~lsflAEtfIF~Y~Gl~~f~  343 (575)
T KOG1965|consen  266 --PSLESALMLLMSYLSYLLAEGCGLSGIVTVLFCGIVMSHYTYHNLSGESQITTKHFFRTLSFLAETFIFIYLGLSAFD  343 (575)
T ss_pred             --cHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhc
Confidence              34667889999999999999999999999999999999853     223333444444557888889999999633 4


Q ss_pred             ccccccccchhHHHHHHHHHHHHhhhHHHHHHHHHhhCC----------ChHHHHHHHHHhhhhhHHHHHHHHHhh-cc-
Q 038269          325 LFTFEADTLGTWGRFFFLIVISTAGKVVGTVICGLMLGF----------HWPESVSLGLLLSAKGHFYIFLAIMGA-VH-  392 (792)
Q Consensus       325 ~~~l~~~~~~~~~~~~~li~~~~~~K~l~~~l~~~~~~~----------~~re~~~lg~~l~~kG~v~l~l~~~~~-~~-  392 (792)
                      .....   .....++....++++++|..-++..+.+.+.          +.++-..+.|.-..||.++++++..-. +. 
T Consensus       344 ~~k~~---~~~~~fv~~~~vlV~lgRa~nvfPLs~L~N~~rr~k~~~~i~~~~q~~~~w~g~lRGAvs~ALa~~~~~~~~  420 (575)
T KOG1965|consen  344 FQKHV---YKSLQFVFGAGVLVLLGRAANVFPLSFLLNLFRRHKECDLIDDKYQVIMWWAGGLRGAVSFALALGDFTDSP  420 (575)
T ss_pred             cccee---eechHHHHHHHHHHHHHHHHHhccHHHHHHHHhccccccccChHHhhHhHhhhhhhHHHHHHHHhhhccccc
Confidence            32221   2222345566677788898887777766543          444456666644489999999986432 11 


Q ss_pred             ----cccChhhHHHHHHHHHHHHhhhhHHHHHhhhhh
Q 038269          393 ----NYITHTTAASLVIMIFFTIVHTPFVVQNIIGRA  425 (792)
Q Consensus       393 ----~~i~~~~~~~lv~~~vl~~~~~~~li~~l~~~~  425 (792)
                          +.+-..+..++++++++-...+.|+++++....
T Consensus       421 ~~~~q~i~tttl~vVlfT~lv~Gg~T~pml~~L~~~~  457 (575)
T KOG1965|consen  421 HTGGQTIFTTTLVVVLFTVLVFGGSTKPMLSYLMISV  457 (575)
T ss_pred             cccccEEEEeeeeeeeeeeeeeCCccHHHHHHhcccc
Confidence                344455566677777788888999999876543

>KOG4505 consensus Na+/H+ antiporter [Inorganic ion transport and metabolism]

Probab=99.75  E-value=1.8e-16  Score=161.95  Aligned_cols=348  Identities=12%  Similarity=0.157  Sum_probs=249.9

Q ss_pred             HHHHHHHHHHHHhHcccCCChhHHHHHHHhhccCcccccccccc----ccHHHHHHHHHHHHHHHHHHHhhccChhhhhc
Q 038269           35 LLAYVLTNLAHHLLKPMHQPRITSDIVIGLFLGNIQPIRNGFEL----EMIQTLNYIVEFGMICYMFVLGLEMDPYVIFK  110 (792)
Q Consensus        35 ~lil~~~~~~~~l~~rl~~P~iv~~IlaGillGp~~~~~~lf~~----~~~~~l~~l~~lgl~~llF~~Gle~d~~~l~~  110 (792)
                      +.+.+++...-.+-+++-+...+--.+.|+++||....  +|++    +.+.....++.+-+..-.|.++.|+.-+.+.+
T Consensus        20 ~F~slF~l~S~yikekLllgEa~va~itGlI~Gphvln--lfdp~~wgn~d~it~ei~RvvLcvqvfava~eLPr~Y~l~   97 (467)
T KOG4505|consen   20 GFVSLFGLASLYIKEKLLLGEATVAVITGLIFGPHVLN--LFDPNSWGNKDYITYEISRVVLCVQVFAVAMELPRAYMLE   97 (467)
T ss_pred             hHHHHHHHHHHHHHHhHhccchHHhhhhheeechhhhh--hcCCccccCcchhhhhhhhhhHhHHHHHHHHhccHHHHHH
Confidence            34455555556677778888888888999999998765  5532    23455566788888889999999999999999


Q ss_pred             CCcccchHhHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHhhccHHHHHHHHHhc---CCCCCchhHHHHHHHHH
Q 038269          111 PPTRDAIVAYGGMLSTFILGCSLTPFLHYSTHRKIVVAITLSFTLAGSGSHILTRVITNL---KIGKSDIGKLGMAAGIH  187 (792)
Q Consensus       111 ~~~~~~~ia~~~~l~p~~~~~~~~~~l~~~~~~~~~~al~lg~~ls~Ts~~vv~~iL~el---~ll~s~~g~l~l~~a~i  187 (792)
                      +|+....+-..-++.-+.+.+.+.|.+- +. .....++.+++++++|++.....+..+.   |..+.++..+..+++..
T Consensus        98 ~w~Si~vlllpVmi~gwlvs~~fvy~l~-p~-lnf~~Sl~iaaCiTaTDPiLsssIV~~g~~akrvPeriR~lL~AESGc  175 (467)
T KOG4505|consen   98 HWRSIFVLLLPVMIIGWLVSFGFVYALI-PN-LNFLTSLLIAACITATDPILSSSIVGGGKFAKRVPERIRNLLAAESGC  175 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHh-cc-ccHHHHHHHHHHccCCchhHHHHHhcCchHhhhChHHHHHHHHHhcCC
Confidence            9998876655444444444444444332 21 2234578999999999965555555543   33567888899999999


Q ss_pred             HHHHHHHHHHHHHHHhcCCCC--Cchh-hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhcCCCCcccchhHHHHHHHH
Q 038269          188 SDMITMLIICIGAVFVLPQGN--NTQE-QIQSAIKMSASLIFQSVFAAKVSPVFMNWINNENPEGKAMKGTHLVLSLAFM  264 (792)
Q Consensus       188 ~Di~~~~ll~i~~~~~~~~~~--~~~~-~~~~~l~~~~~~i~~~~~~~~v~r~~~~~i~~~~~~~~~~~e~~~~~il~~~  264 (792)
                      ||..++..+-+.+-+...+..  ...+ .-...+......+.++.+++++.|...++..++.--+   .|+++.+-++++
T Consensus       176 NDGMaipflflai~Ll~h~~~r~~~rdwv~~~iLyec~fg~llG~vIG~l~r~~lk~aekkrlid---~eSfl~~~vvl~  252 (467)
T KOG4505|consen  176 NDGMAIPFLFLAIDLLRHKPRRKAGRDWVCDNILYECFFGCLLGCVIGYLSRQGLKFAEKKRLID---RESFLIFYVVLA  252 (467)
T ss_pred             CCCcchhHHHHHHHHHhcCchhccCCceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc---HHHHHHHHHHHH
Confidence            999999988776665543321  1100 1123444444556677778888898888887765443   478888888899


Q ss_pred             HHHHHHhhhhCchhhHHHHHHhhhcCCCCcchHHHHH-HHhHHHHhhhhHHHHHhhcccccccccccc--cchhHHHHHH
Q 038269          265 VAVCSCSPFYGYSPILSAFMAGIFFPSEGRMSKWTVG-KVNYLLSTLYYPIFFFWMGFHAKLFTFEAD--TLGTWGRFFF  341 (792)
Q Consensus       265 l~~~~~ae~~G~~~~lgafvaGl~l~~~~~~~~~l~~-kl~~~~~~~~~PlfF~~~Gl~~d~~~l~~~--~~~~~~~~~~  341 (792)
                      +.++.+.+.+|.+-.+-.|.||.+++.+..+.+...| ++..+...++.-.||++.|..++++++.+.  +...|-.+++
T Consensus       253 lfc~gigtiiGvddLl~sFfAGi~Fswd~wFsk~t~~s~v~~viD~lls~sfF~yfGaiipwsqFn~s~~gl~vwrlvil  332 (467)
T KOG4505|consen  253 LFCMGIGTIIGVDDLLVSFFAGIVFSWDEWFSKKTKESRVSEVIDLLLSLSFFLYFGAIIPWSQFNLSVEGLPVWRLVIL  332 (467)
T ss_pred             HHHhhhhheechhHHHHHHHhhhhcchhHHhhhhhhhccHHHHHHHHHHHHHHHHhccccchhhcCCcccCchHHHHHHH
Confidence            9999999999999999999999999998777766544 677777888889999999999998877542  2345666555


Q ss_pred             HHHHHHhhhHHHHHHHHHh-hC-CChHHHHHHHHHhhhhhHHHHHHHHHhh
Q 038269          342 LIVISTAGKVVGTVICGLM-LG-FHWPESVSLGLLLSAKGHFYIFLAIMGA  390 (792)
Q Consensus       342 li~~~~~~K~l~~~l~~~~-~~-~~~re~~~lg~~l~~kG~v~l~l~~~~~  390 (792)
                      -+.+.+.-|+-++++.-.+ .. .+|||++++|. .+|.|.-++..+..+.
T Consensus       333 si~iif~RRip~v~l~kp~iPdikswkEALFvGh-FGPIGVgAly~allar  382 (467)
T KOG4505|consen  333 SITIIFIRRIPAVYLMKPLIPDIKSWKEALFVGH-FGPIGVGALYYALLAR  382 (467)
T ss_pred             HHHHHHhcccceEEEeccCCcchhhHHHHHHhcc-CCCccHHHHHHHHHHH
Confidence            5555555566655543222 11 37999999999 8999999988887664

>PRK14853 nhaA pH-dependent sodium/proton antiporter; Provisional

Probab=99.75  E-value=1.4e-15  Score=165.95  Aligned_cols=305  Identities=13%  Similarity=0.177  Sum_probs=200.6

Q ss_pred             HHHHHHHHHHH-HHHHHHhhccChhhhh---cCCccc---chHhHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHH
Q 038269           83 TLNYIVEFGMI-CYMFVLGLEMDPYVIF---KPPTRD---AIVAYGGMLSTFILGCSLTPFLHYSTHRKIVVAITLSFTL  155 (792)
Q Consensus        83 ~l~~l~~lgl~-~llF~~Gle~d~~~l~---~~~~~~---~~ia~~~~l~p~~~~~~~~~~l~~~~~~~~~~al~lg~~l  155 (792)
                      .+....+=|++ +|.|.+|+|+..+.+.   ++.|++   ..-++.|+++|.++-.    .++....   ...--+| +-
T Consensus        61 ~l~~wiNDgLMaiFFf~vGLEiKrE~~~GeL~~~~~a~lP~~aAlGGm~vPaliy~----~~n~~~~---~~~~GW~-Ip  132 (423)
T PRK14853         61 SLGTWAADGLLAIFFFVVGLELKREFVAGDLRDPSRAALPVAAALGGMIVPALIYV----AVNLAGG---GALRGWA-IP  132 (423)
T ss_pred             CHHHHHHHhhHHHHHHHHHHHHhHHHhccchhhHHHHHHHHHHHHHhHHHHHHHHH----HHhCCch---hhhhhhh-hh
Confidence            34455555555 7888999999766553   233333   4567788888885433    3332110   1112233 34


Q ss_pred             hhccHHHHHHHHHhcCC-CCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHHHHHHHHHH
Q 038269          156 AGSGSHILTRVITNLKI-GKSDIGKLGMAAGIHSDMITMLIICIGAVFVLPQGNNTQEQIQSAIKMSASLIFQSVFAAKV  234 (792)
Q Consensus       156 s~Ts~~vv~~iL~el~l-l~s~~g~l~l~~a~i~Di~~~~ll~i~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~v  234 (792)
                      +.||.+....++..++. .+++++...++.|++||+.+++++++++    ++ +..      +.+.......+  +..  
T Consensus       133 ~ATDIAFalgvLallG~rvp~~l~~FLlaLAIvDDl~AIiVIAlfY----t~-~i~------~~~L~~a~~~~--~~l--  197 (423)
T PRK14853        133 TATDIAFALAVLAVIGTHLPSALRTFLLTLAVVDDLLAITVIAVFY----TS-ELN------LEALLLALVPL--ALF--  197 (423)
T ss_pred             hhhHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHHHHhhhecc----CC-CCC------HHHHHHHHHHH--HHH--
Confidence            56788888899998764 5889999999999999999999988775    22 221      22222211111  111  


Q ss_pred             hHHHHHHHhhhcCCCCcccchhHHHHHHHHHHHHHHhhhhCchhhHHHHHHhhhcCCCC-----------cchHHHHHHH
Q 038269          235 SPVFMNWINNENPEGKAMKGTHLVLSLAFMVAVCSCSPFYGYSPILSAFMAGIFFPSEG-----------RMSKWTVGKV  303 (792)
Q Consensus       235 ~r~~~~~i~~~~~~~~~~~e~~~~~il~~~l~~~~~ae~~G~~~~lgafvaGl~l~~~~-----------~~~~~l~~kl  303 (792)
                            |+.++.    ++++.+.++++.  +++.+..+..|+|+.+|+|++|+++|..+           +..+++++++
T Consensus       198 ------~~l~~~----~V~~~~~Y~ilg--~~lW~~~~~sGiHatiAGvllGl~IP~~~~~~~~~~~~~~~p~~rle~~L  265 (423)
T PRK14853        198 ------WLLVQK----RVRKWWLLLPLG--VATWILVHESGVHATVAGVLLGFAVPVLRREGEEGPEAGPGLAEHLEHRL  265 (423)
T ss_pred             ------HHHHHc----CCchhhHHHHHH--HHHHHHHHHhCCCHHHHHHHHHHhcccccccccccccccCCHHHHHHHHH
Confidence                  222222    234455555543  35566889999999999999999999521           2357899999


Q ss_pred             hHHHHhhhhHHH-HHhhcccccc-cccccccchhHHHHHHHHHHHHhhhHHHHHHHHHhh----------CCChHHHHHH
Q 038269          304 NYLLSTLYYPIF-FFWMGFHAKL-FTFEADTLGTWGRFFFLIVISTAGKVVGTVICGLML----------GFHWPESVSL  371 (792)
Q Consensus       304 ~~~~~~~~~Plf-F~~~Gl~~d~-~~l~~~~~~~~~~~~~li~~~~~~K~l~~~l~~~~~----------~~~~re~~~l  371 (792)
                      ++++..+++|+| |+..|.++|. ..+. . ...-.....+++..+++|.++.+..++..          +++|++-..+
T Consensus       266 ~p~V~~~ILPLFAFANaGV~l~~~~~~~-~-~~~~pv~lgI~lgL~vGK~lGI~~~~~l~~k~~~~~lP~~~~~~~l~gv  343 (423)
T PRK14853        266 RPLSAGVAVPVFAFFSAGVAIGGLSGLG-A-ALTDPIVLGVVLGLVVGKPIGIFGTTYLLTKFTRASLDDDLTWIDVFGV  343 (423)
T ss_pred             HHHHHHHHHHHHHHHHhhheecCchhHH-H-HhhchHHHHHHHHHHHHhHHHHHHHHHHHHHhCcCCCCCCCCHHHHHHH
Confidence            999999999999 9999999985 3220 0 00111455667788899999988877653          5789999999


Q ss_pred             HHHhhhhhHHHHHHHHHhhc-ccccChhhHHHHHHHHHHHHhhhhHHHHHhhhh
Q 038269          372 GLLLSAKGHFYIFLAIMGAV-HNYITHTTAASLVIMIFFTIVHTPFVVQNIIGR  424 (792)
Q Consensus       372 g~~l~~kG~v~l~l~~~~~~-~~~i~~~~~~~lv~~~vl~~~~~~~li~~l~~~  424 (792)
                      |++-+.-=++++.+++.+++ .....++.=-.+++.++++.+++-.+.+...++
T Consensus       344 ~~L~GIGFTmSlFI~~LAf~~~~~~~~~aKigil~~S~~s~~~G~~~l~~~~~~  397 (423)
T PRK14853        344 ALLAGIGFTVSLLIGELAFGGGSARDDAVKVGVLTGSLIAALLASVLLRLRNRK  397 (423)
T ss_pred             HHHHHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            99777777899999999984 332333334445566666666666666654443

>TIGR00773 NhaA Na+/H+ antiporter NhaA

Probab=99.52  E-value=2.2e-12  Score=138.51  Aligned_cols=271  Identities=15%  Similarity=0.190  Sum_probs=170.0

Q ss_pred             HHHHHHHHHHH-HHHHHHhhccChhhhh---cCCccc---chHhHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHH
Q 038269           83 TLNYIVEFGMI-CYMFVLGLEMDPYVIF---KPPTRD---AIVAYGGMLSTFILGCSLTPFLHYSTHRKIVVAITLSFTL  155 (792)
Q Consensus        83 ~l~~l~~lgl~-~llF~~Gle~d~~~l~---~~~~~~---~~ia~~~~l~p~~~~~~~~~~l~~~~~~~~~~al~lg~~l  155 (792)
                      .+....+=|++ +|.|.+|+|+..+.+.   ++.|++   ..-++.|+++|.++=    ..++.....   ..--+|+-+
T Consensus        51 ~l~~wiNDgLMaiFFf~vGlEiKrE~~~GeL~~~~~a~lP~~aA~GGm~vPa~iy----~~~n~~~~~---~~~GW~IP~  123 (373)
T TIGR00773        51 SLLHWINDGLMAVFFLLIGLEVKRELLEGALSSLRQAIFPVIAAIGGMIAPALIY----LAFNANDPI---TREGWAIPA  123 (373)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhchHHHHHHH----hheecCCCc---ccCcccccc
Confidence            44455555555 6888899999988875   444444   456667788887543    233321100   001112211


Q ss_pred             hh-ccHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHHHHHHHHHH
Q 038269          156 AG-SGSHILTRVITNLKIGKSDIGKLGMAAGIHSDMITMLIICIGAVFVLPQGNNTQEQIQSAIKMSASLIFQSVFAAKV  234 (792)
Q Consensus       156 s~-Ts~~vv~~iL~el~ll~s~~g~l~l~~a~i~Di~~~~ll~i~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~v  234 (792)
                      +. ++|.+-...+-- +..+..+....++-|++||+.++++.++++.    + +..      +.+......++.++    
T Consensus       124 ATDiAFalgvlallG-~~vP~~lr~FLl~LAIvDDlgaI~vIA~FYt----~-~i~------~~~L~~a~~~~~~l----  187 (373)
T TIGR00773       124 ATDIAFALGVMALLG-KRVPLALKIFLLALAIIDDLGAIVIIALFYT----N-DLS------MAALLVAAVAIAVL----  187 (373)
T ss_pred             HHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHHHHhhHhheeeecC----C-CCC------HHHHHHHHHHHHHH----
Confidence            11 233333222222 3367888899999999999999998886642    2 221      23332222221111    


Q ss_pred             hHHHHHHHhhhcCCCCcccchhHHHHHHHHHHHHHHhhhhCchhhHHHHHHhhhcCCCCcc----hHHHHHHHhHHHHhh
Q 038269          235 SPVFMNWINNENPEGKAMKGTHLVLSLAFMVAVCSCSPFYGYSPILSAFMAGIFFPSEGRM----SKWTVGKVNYLLSTL  310 (792)
Q Consensus       235 ~r~~~~~i~~~~~~~~~~~e~~~~~il~~~l~~~~~ae~~G~~~~lgafvaGl~l~~~~~~----~~~l~~kl~~~~~~~  310 (792)
                            ++.+|..    +++...+.. ..++..+++ ...|+|+.+|+|++|+++|+..+.    .+++++.+++.+..+
T Consensus       188 ------~~~~~~~----v~~~~~y~~-lgvllW~~~-~~sGVHatiaGvllGl~iP~~~~~~~~pl~rleh~L~p~v~~l  255 (373)
T TIGR00773       188 ------AVLNRCG----VRRLGPYML-VGVILWFAV-LKSGVHATLAGVIIGFFIPLKGKKGESPLKRLEHVLHPWVAYL  255 (373)
T ss_pred             ------HHHHHcC----CchhhHHHH-HHHHHHHHH-HHcCCcHHHHHHHHeeeecccccCCCCHHHHHHHHHHHHHHHH
Confidence                  2223321    233333433 333333333 799999999999999999985433    356667777778899


Q ss_pred             hhHHH-HHhhcccccccccccccchhHHHHHHHHHHHHhhhHHHHHHHHHhh----------CCChHHHHHHHHHhhhhh
Q 038269          311 YYPIF-FFWMGFHAKLFTFEADTLGTWGRFFFLIVISTAGKVVGTVICGLML----------GFHWPESVSLGLLLSAKG  379 (792)
Q Consensus       311 ~~Plf-F~~~Gl~~d~~~l~~~~~~~~~~~~~li~~~~~~K~l~~~l~~~~~----------~~~~re~~~lg~~l~~kG  379 (792)
                      ++|+| |+..|.++|...+.  ....+ ....+++..+++|.++++..++..          +++|++-.-+|++-+.-=
T Consensus       256 ilPlFAFanAGv~l~~~~~~--~~~~~-v~lgI~lgLvvGK~lGI~~~~~l~~kl~~~~lP~~~~w~~~~gv~~L~GIGF  332 (373)
T TIGR00773       256 ILPLFAFANAGVSLQGVSLN--GLTSM-LPLGIILGLLIGKPLGIFLFSWIAVKLKLAKLPEGINFKQIFAVGVLCGIGF  332 (373)
T ss_pred             HHHHHHHHhcCeeeecCcch--hhcCh-HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHH
Confidence            99999 99999999864332  11123 356778888999999999887653          578999999999777777


Q ss_pred             HHHHHHHHHhhc
Q 038269          380 HFYIFLAIMGAV  391 (792)
Q Consensus       380 ~v~l~l~~~~~~  391 (792)
                      ++++.+++.+++
T Consensus       333 TmSlfI~~LAf~  344 (373)
T TIGR00773       333 TMSIFIASLAFG  344 (373)
T ss_pred             HHHHHHHHHhcC
Confidence            889999998884

These proteins are members of the NhaA Na+:H+ Antiporter (NhaA) Family (TC. 2.A.33). The Escherichia coli NhaA protein probably functions in the regulation of the internal pH when the external pH is alkaline. It also uses the H+ gradient to expel Na+ from the cell. Its activity is highly pH dependent. Only the E. coli protein is functionally and structurally well characterized.

>PRK14856 nhaA pH-dependent sodium/proton antiporter; Provisional

Probab=99.29  E-value=6.8e-10  Score=121.25  Aligned_cols=298  Identities=14%  Similarity=0.175  Sum_probs=179.9

Q ss_pred             HHHHHHHHHHH-HHHHHHhhccChhhhh---cCCccc---chHhHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHH
Q 038269           83 TLNYIVEFGMI-CYMFVLGLEMDPYVIF---KPPTRD---AIVAYGGMLSTFILGCSLTPFLHYSTHRKIVVAITLSFTL  155 (792)
Q Consensus        83 ~l~~l~~lgl~-~llF~~Gle~d~~~l~---~~~~~~---~~ia~~~~l~p~~~~~~~~~~l~~~~~~~~~~al~lg~~l  155 (792)
                      .+....+=|++ +|.|.+|+|+..+.+.   ++.|++   ..-|+.|+++|.++    +..++.+...    .--+|+-+
T Consensus        67 sl~~wINDgLMaiFFf~VGLEIKrE~~~GeLs~~rka~lPi~AAlGGmivPAlI----Y~~~n~~~~~----~~GWgIPm  138 (438)
T PRK14856         67 SLHNWIDDVLMALFFLMIGLEIKRELLFGELSSFKKASFPVIAALGGMIAPGLI----YFFLNADTPS----QHGFGIPM  138 (438)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHhccHHHHHH----HhheecCCCc----cCcccccc
Confidence            34455555554 7888999999888775   344444   45666778888754    3333322100    11222222


Q ss_pred             hh-ccHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHHHHHHHHHH
Q 038269          156 AG-SGSHILTRVITNLKIGKSDIGKLGMAAGIHSDMITMLIICIGAVFVLPQGNNTQEQIQSAIKMSASLIFQSVFAAKV  234 (792)
Q Consensus       156 s~-Ts~~vv~~iL~el~ll~s~~g~l~l~~a~i~Di~~~~ll~i~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~v  234 (792)
                      +. ++|.+-.-.+-- +..++.+....++-|++||+.+++++++++.    + +.      .+.+..++..++.++    
T Consensus       139 ATDIAFAlgvLallG-~rvP~~LrvFLlaLAIvDDlgAI~VIAlFYt----~-~i------~~~~L~~a~~~~~~l----  202 (438)
T PRK14856        139 ATDIAFALGVIMLLG-KRVPTALKVFLITLAVADDLGAIVVIALFYT----T-NL------KFAWLLGALGVVLVL----  202 (438)
T ss_pred             HHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHHHhhhHhheeeecC----C-CC------cHHHHHHHHHHHHHH----
Confidence            21 223222222221 3367788889999999999999998886642    2 22      133333332222211    


Q ss_pred             hHHHHHHHhhhcCCCCcccchhHHHHHHHHHHHHHHhhhhCchhhHHHHHHhhhcCCCCcc-------------------
Q 038269          235 SPVFMNWINNENPEGKAMKGTHLVLSLAFMVAVCSCSPFYGYSPILSAFMAGIFFPSEGRM-------------------  295 (792)
Q Consensus       235 ~r~~~~~i~~~~~~~~~~~e~~~~~il~~~l~~~~~ae~~G~~~~lgafvaGl~l~~~~~~-------------------  295 (792)
                            ++.+|..    ++....++++.+++  =+....-|+|+.++..++|+++|..++.                   
T Consensus       203 ------~~ln~~~----v~~~~~Y~~~G~~l--W~~~l~SGVHaTiAGV~lal~iP~~~~~~~~~~~~~~~~~~~~~~~~  270 (438)
T PRK14856        203 ------AVLNRLN----VRSLIPYLLLGVLL--WFCVHQSGIHATIAAVVLAFMIPVKIPKDSKNVELLELGKRYAETSS  270 (438)
T ss_pred             ------HHHHHcC----CccccHHHHHHHHH--HHHHHHccCcHHHHHHHHHheeecccccccchhhhhhhhhhhhcccc
Confidence                  1222221    22233344333222  1234578999999999999999964322                   


Q ss_pred             -------------------------hHHHHHHHhHHHHhhhhHHH-HHhhcccccccccccccchhHHHHHHHHHHHHhh
Q 038269          296 -------------------------SKWTVGKVNYLLSTLYYPIF-FFWMGFHAKLFTFEADTLGTWGRFFFLIVISTAG  349 (792)
Q Consensus       296 -------------------------~~~l~~kl~~~~~~~~~Plf-F~~~Gl~~d~~~l~~~~~~~~~~~~~li~~~~~~  349 (792)
                                               .+++++.+++.+..+.+|+| |.-.|..++.......++    ....+++..+++
T Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~pl~rleh~L~p~v~f~IlPlFAfaNAGV~l~~~~~~~~~p----v~lGI~~GLvvG  346 (438)
T PRK14856        271 GALLTKEQQEILHSIEEKASALQSPLERLEHFLAPISGYFIMPLFAFANAGVSVDSSINLEVDK----VLLGVILGLCLG  346 (438)
T ss_pred             ccccccchhhhhhhhhhcccccCCHHHHHHHhhhhhhHHhhHHHHHhhcCCceeccchhhccCc----HHHHHHHHHHhc
Confidence                                     13466677788888999999 889999987542211122    344556777889


Q ss_pred             hHHHHHHHHHhh----------CCChHHHHHHHHHhhhhhHHHHHHHHHhhcc--cccChhhHHHHHHHHHHHHhhhhHH
Q 038269          350 KVVGTVICGLML----------GFHWPESVSLGLLLSAKGHFYIFLAIMGAVH--NYITHTTAASLVIMIFFTIVHTPFV  417 (792)
Q Consensus       350 K~l~~~l~~~~~----------~~~~re~~~lg~~l~~kG~v~l~l~~~~~~~--~~i~~~~~~~lv~~~vl~~~~~~~l  417 (792)
                      |.+|.+..+++.          +++|++-.-+|++-+.-=++++.+++.+++.  ....++.=..+++.++++.+++-.+
T Consensus       347 K~lGI~~~s~lavkl~~a~lP~g~~w~~l~gv~~LaGIGFTmSLFIa~LAF~~~~~~~~~~aKigIL~gS~lsai~G~~~  426 (438)
T PRK14856        347 KPLGIFLITFISEKLKITARPKGISWWHILGAGLLAGIGFTMSMFISNLAFTSEHKDAMEVAKIAILLGSLISGIIGALY  426 (438)
T ss_pred             chHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999988887653          5789999999987777778999999998843  3233344444555666666666666


Q ss_pred             HHH
Q 038269          418 VQN  420 (792)
Q Consensus       418 i~~  420 (792)
                      .++
T Consensus       427 L~~  429 (438)
T PRK14856        427 LFA  429 (438)
T ss_pred             HHH
Confidence            654

>PRK11175 universal stress protein UspE; Provisional

Probab=99.27  E-value=3.6e-10  Score=122.33  Aligned_cols=281  Identities=14%  Similarity=0.122  Sum_probs=158.9

Q ss_pred             eEEEEecCCCChhhHHHHHHHhcCCCCCCceEEEEEEeeecccchhhhhcccCccccccchhhhhhhhHH-HHHHHHHhh
Q 038269          446 QILLCLHGSQNITSTLNFLEISRGTANPGVAVYVTDMIELTDQIAATLVQNEGIDTVTVTDKAVMEMREE-ITTAVQSYV  524 (792)
Q Consensus       446 rILvcv~~~~~~~~li~l~~~~~~~~~sp~~v~~lhLvel~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~af~~~~  524 (792)
                      |||+++...+.....++.+..++...  ..+++++|.++-.....+.....+..+.   ......+..++ +-+..+.+.
T Consensus         5 ~ILv~~D~s~~~~~al~~a~~lA~~~--~a~l~ll~v~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~   79 (305)
T PRK11175          5 NILVVIDPNQDDQPALRRAVYLAQRN--GGKITAFLPIYDFSYEMTTLLSPDEREA---MRQGVISQRTAWIREQAKPYL   79 (305)
T ss_pred             eEEEEcCCCccccHHHHHHHHHHHhc--CCCEEEEEeccCchhhhhcccchhHHHH---HHHHHHHHHHHHHHHHHHHHh
Confidence            69999988888888888887777543  3568889987532211111000000000   00000011122 222333332


Q ss_pred             hccCcceEEEEeEeecCCCChhHHHHHHHhhcCCcEEEecCCCCccCCCccccCCcchhHHHHHHhhhCCCceEEEecCC
Q 038269          525 DENGGGITLKRMLALSTFSGMPQDICILAEDLMVSLIILPFHKRQLEDGTLDEGHPGFRYVNRKLLRNATCSVGILVDRG  604 (792)
Q Consensus       525 ~~~~~~v~v~~~t~vs~~~~m~~dI~~~a~e~~~~liilp~h~~~~~~g~~~~~~~~~~~~n~~vl~~apCsVgIlVdrg  604 (792)
                         ..++.++......  .+.+++|++.|+++++||||+|+|.+....      ...+++.-+++++++||+|-++ ..+
T Consensus        80 ---~~~~~~~~~v~~~--g~~~~~i~~~a~~~~~DLiV~G~~~~~~~~------~~~~gs~~~~l~~~~~~pvlvv-~~~  147 (305)
T PRK11175         80 ---DAGIPIEIKVVWH--NRPFEAIIQEVIAGGHDLVVKMTHQHDKLE------SVIFTPTDWHLLRKCPCPVLMV-KDQ  147 (305)
T ss_pred             ---hcCCceEEEEecC--CCcHHHHHHHHHhcCCCEEEEeCCCCcHHH------hhccChhHHHHHhcCCCCEEEe-ccc
Confidence               2357776655544  678999999999999999999999653322      1235666789999999998554 332


Q ss_pred             CCCccccccccccceeEEEEeccCcCh-------HHHHHHHHHHhcCC-CeEEEEEEeeecCCCCcccccccccCCcchh
Q 038269          605 FGSIENISRSQAASLNVAVIFIGGKDD-------REALAYASRVARHP-AVKLTVIRFLLDNSENPQRRAATYKDNTAEL  676 (792)
Q Consensus       605 ~~~~~~~~~~~~~~~~v~v~f~GG~dd-------reAL~~a~rma~~~-~v~ltv~r~~~~~~~~~~~~~~~~~~~~~~~  676 (792)
                      .         .....+|+++.=++++.       ..|+++|.++++.. +.+++++|+..........   ....... +
T Consensus       148 ~---------~~~~~~Ilva~D~s~~~~~~~~~~~~al~~a~~la~~~~~a~l~ll~v~~~~~~~~~~---~~~~~~~-~  214 (305)
T PRK11175        148 D---------WPEGGKILVAVNVASEEPYHDALNEKLVEEAIDLAEQLNHAEVHLVNAYPVTPINIAI---ELPEFDP-S  214 (305)
T ss_pred             c---------cCCCCeEEEEeCCCCCccchhHHHHHHHHHHHHHHhhCcCCceEEEEEecCcchhccc---cccccch-h
Confidence            1         11235899998876542       67999999999887 9999999987532210000   0000000 1


Q ss_pred             hhhhhh---hHHHHHHHHHhhcCCCcEEEEEEecCChHHHHHHHHhhh--cCccEEEEecCCCCCcccccCCcccCCCCc
Q 038269          677 EEEMKI---DDECFAEFYERQVAEGHVAYAEKHLANSSETFATLRSLE--GQYALIIVGRGERANSILTVGMNDWQQCPE  751 (792)
Q Consensus       677 ~~~~~~---d~~~l~e~~~~~~~~~~v~y~e~~v~~~~e~~~~i~~~~--~~~dL~iVGr~~~~~s~~~~gl~~w~e~~e  751 (792)
                      +.++..   -++.++++.+.. .   +...+..+..|. ....|.+..  .+.||+++|.++..      |+.+|    =
T Consensus       215 ~~~~~~~~~~~~~l~~~~~~~-~---~~~~~~~v~~G~-~~~~I~~~a~~~~~DLIVmG~~~~~------~~~~~----l  279 (305)
T PRK11175        215 VYNDAIRGQHLLAMKALRQKF-G---IDEEQTHVEEGL-PEEVIPDLAEHLDAELVILGTVGRT------GLSAA----F  279 (305)
T ss_pred             hHHHHHHHHHHHHHHHHHHHh-C---CChhheeeccCC-HHHHHHHHHHHhCCCEEEECCCccC------CCcce----e
Confidence            111111   123455554332 1   111222333332 233343332  36999999997531      22221    2


Q ss_pred             cchhhhhhhcCCCCCceeEEEEe
Q 038269          752 LGPIGDVLSGSDFLVRTSVLIIK  774 (792)
Q Consensus       752 LG~iGd~las~d~~~~~SvLvvq  774 (792)
                      +|-..+-++..   .+++||||.
T Consensus       280 lGS~a~~v~~~---~~~pVLvv~  299 (305)
T PRK11175        280 LGNTAEHVIDH---LNCDLLAIK  299 (305)
T ss_pred             ecchHHHHHhc---CCCCEEEEc
Confidence            67777777764   678999995

>KOG1966 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism]

Probab=99.22  E-value=5.3e-12  Score=139.35  Aligned_cols=385  Identities=14%  Similarity=0.169  Sum_probs=241.3

Q ss_pred             chHHHHHHHHHHHHHHHHHHHhHcccC--CChhHHHHHHHhhccCccccccccccccHHHHH--HHHHHHHHHHHHHHhh
Q 038269           26 DGSGKIVGLLLAYVLTNLAHHLLKPMH--QPRITSDIVIGLFLGNIQPIRNGFELEMIQTLN--YIVEFGMICYMFVLGL  101 (792)
Q Consensus        26 ~lp~~l~~i~lil~~~~~~~~l~~rl~--~P~iv~~IlaGillGp~~~~~~lf~~~~~~~l~--~l~~lgl~~llF~~Gl  101 (792)
                      ..|..+.-..++.-++.+...+..+++  .|.-...|+.|+++|-........   ....++  .+--.-+-.++|-+|.
T Consensus        39 ~~p~vi~lwil~asLaKi~fh~~~~l~~i~PES~lLI~~Gl~lG~ii~~~~~~---~~~~L~s~vFFlyLLPPIvlDAGY  115 (670)
T KOG1966|consen   39 HIPYVITLWILVASLAKIVFHLMPKLRKIVPESCLLIILGLVLGGIIKALATI---APFFLESDVFFLYLLPPIVLDAGY  115 (670)
T ss_pred             cCchhhHHHHHHHHHHHhcccccccccccCchhHHHHHHHHHHHHHHHhhhcc---ccccccccchhhhhcCHHHhcccc
Confidence            445444444444445555555555555  799889999999999532110000   000111  1111112247789999


Q ss_pred             ccChhhhhcCCcccchHhHHHHHH-HHHHHHHHHHHhh---cccchhHHHHHHHHHHHhhccHHHHHHHHHhcCCCCCch
Q 038269          102 EMDPYVIFKPPTRDAIVAYGGMLS-TFILGCSLTPFLH---YSTHRKIVVAITLSFTLAGSGSHILTRVITNLKIGKSDI  177 (792)
Q Consensus       102 e~d~~~l~~~~~~~~~ia~~~~l~-p~~~~~~~~~~l~---~~~~~~~~~al~lg~~ls~Ts~~vv~~iL~el~ll~s~~  177 (792)
                      -|.-+.+..|...++..|+.|.+. .+.+|..++.+-.   ++......--+++|...|..+|..+..+..|.. .|.-+
T Consensus       116 fMp~r~Ff~NlgtILlfAVvGTi~Na~~~g~sL~~i~~~glf~~~~glld~LlFgSLIsAVDPVAVLaVFEEih-VNe~L  194 (670)
T KOG1966|consen  116 FMPNRAFFENLGTILLFAVVGTIWNAFTIGASLYAISLSGLFGMSIGLLDILLFGSLISAVDPVAVLAVFEEIH-VNEVL  194 (670)
T ss_pred             cCccHHHHhccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHhcCchhhhhhhhhhc-cccEE
Confidence            999999999999999999999887 4445544432221   111112223578899999999999999999998 57778


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-Cch-hhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhcCCCCcccch
Q 038269          178 GKLGMAAGIHSDMITMLIICIGAVFVLPQGN-NTQ-EQIQSAIKMSASLIFQSVFAAKVSPVFMNWINNENPEGKAMKGT  255 (792)
Q Consensus       178 g~l~l~~a~i~Di~~~~ll~i~~~~~~~~~~-~~~-~~~~~~l~~~~~~i~~~~~~~~v~r~~~~~i~~~~~~~~~~~e~  255 (792)
                      --++.|++++||.+.++++-++..+..-+++ ... .... .+..++.+.+.++.++.+...+.....|.+.+   ++-.
T Consensus       195 fI~VFGESLlNDaVTVVLY~~f~sf~~ig~~n~~~~d~~~-G~~sFfVVslGG~lvGivfafl~sl~tkft~~---vrvi  270 (670)
T KOG1966|consen  195 FIIVFGESLLNDAVTVVLYNMFISFVEIGSDNLTTIDYVL-GVVSFFVVSLGGALVGIVFAFLASLVTKFTKH---VRVL  270 (670)
T ss_pred             EeeeehhhhhcCceEEehHHHHHHHHHhcccceeEeeeec-ceeEEEEEecCchhHHHHHHHHHHHHHHhhcc---eeee
Confidence            8899999999999999999888777665422 110 0000 01111111112222223333333333333322   3334


Q ss_pred             hHHHHHHHHHHHHHHhhhhCchhhHHHHHHhhhcCCC--CcchHHH---HHHHhHHHHhhhhHHHHHhhccccccccccc
Q 038269          256 HLVLSLAFMVAVCSCSPFYGYSPILSAFMAGIFFPSE--GRMSKWT---VGKVNYLLSTLYYPIFFFWMGFHAKLFTFEA  330 (792)
Q Consensus       256 ~~~~il~~~l~~~~~ae~~G~~~~lgafvaGl~l~~~--~~~~~~l---~~kl~~~~~~~~~PlfF~~~Gl~~d~~~l~~  330 (792)
                      +..+++.+.+.+|..+|.+++|++++-.++|+++...  .....+.   .+..-...+..-.++.|++.|..+=-..   
T Consensus       271 ePvfif~~pYlaYL~aEm~hlSgIlAii~CG~~m~~Yv~~Nis~~s~~tvky~~K~lss~sEt~IF~fLGvs~v~~~---  347 (670)
T KOG1966|consen  271 EPVFIFLLPYLAYLTAEMFHLSGILAIIFCGLCMKKYVEANISQKSATTVKYFMKMLSSLSETVIFMFLGVSTVSSN---  347 (670)
T ss_pred             cchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhccchhhheeehhhhcCCc---
Confidence            4578888999999999999999999999999998753  1222222   2233333466678889999998774321   


Q ss_pred             ccchhHHHHHHHHHHHHhhhHHHHHHHHHhh------CCChHHHHHHHHHhhhhhHHHHHHHHHhh-----cccccChhh
Q 038269          331 DTLGTWGRFFFLIVISTAGKVVGTVICGLML------GFHWPESVSLGLLLSAKGHFYIFLAIMGA-----VHNYITHTT  399 (792)
Q Consensus       331 ~~~~~~~~~~~li~~~~~~K~l~~~l~~~~~------~~~~re~~~lg~~l~~kG~v~l~l~~~~~-----~~~~i~~~~  399 (792)
                      +.| .|.++.+-++..++.|.+++...+++.      +++..|-+.++. =+.||.+.+.+...-.     ..+..-..+
T Consensus       348 h~w-d~~Fi~~T~~fc~~~R~lgv~~lt~~~N~fr~~k~~~~DQfimsy-GGLRGAiaF~LV~lid~~~vp~K~~Fvttt  425 (670)
T KOG1966|consen  348 HHW-DFAFICLTLVFCLIYRAIGVVVLTWFLNKFRMVKLEFVDQFIMSY-GGLRGAIAFGLVVLIDGAKVPAKNMFVTTT  425 (670)
T ss_pred             cee-ehhhhhhHHHHHHHHHHHHhhhhhhhhhhhheeeccccceeeeec-CCcchhhheeEEEEeccccCCcccceEeee
Confidence            222 344555556677788999988877664      457788877766 4778888776644322     223334445


Q ss_pred             HHHHHHHHHHHHhhhhHHHHHhhh
Q 038269          400 AASLVIMIFFTIVHTPFVVQNIIG  423 (792)
Q Consensus       400 ~~~lv~~~vl~~~~~~~li~~l~~  423 (792)
                      ..++.+++.++.++.-|+++|+.-
T Consensus       426 i~VIfFTVflQGiTIkplvk~L~V  449 (670)
T KOG1966|consen  426 IAVIFFTVFLQGITIKPLVKFLKV  449 (670)
T ss_pred             eEEEeeeeeecccchHHHHHHHcc
Confidence            666677888888899999999754

>PRK09560 nhaA pH-dependent sodium/proton antiporter; Reviewed

Probab=99.20  E-value=3.7e-09  Score=113.93  Aligned_cols=298  Identities=14%  Similarity=0.177  Sum_probs=176.3

Q ss_pred             HHHHHHHHHHH-HHHHHHhhccChhhhh---cCCccc---chHhHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHH
Q 038269           83 TLNYIVEFGMI-CYMFVLGLEMDPYVIF---KPPTRD---AIVAYGGMLSTFILGCSLTPFLHYSTHRKIVVAITLSFTL  155 (792)
Q Consensus        83 ~l~~l~~lgl~-~llF~~Gle~d~~~l~---~~~~~~---~~ia~~~~l~p~~~~~~~~~~l~~~~~~~~~~al~lg~~l  155 (792)
                      .+....+=|++ +|.|.+|+|+..+.+.   ++.|++   +.-|+.|+++|.++=.    .++.....   ..--+|+-+
T Consensus        58 sl~~wiNDgLMaiFFf~vGLEiKrE~~~GeLs~~r~a~lPi~AAlGGmivPAlIy~----~~n~g~~~---~~~GWgIPm  130 (389)
T PRK09560         58 SLLHWINDGLMAVFFLLVGLEIKRELLEGQLSSWQQRILPAIAAVGGMVVPALIYA----AFNYNNPE---TLRGWAIPA  130 (389)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhchHHHHHHHh----eeecCCCc---ccCcccccc
Confidence            44555555555 6888899999888775   344444   4566777888875433    33221100   001112222


Q ss_pred             hhccHHHHHHHHHhc-CCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHHHHHHHHHH
Q 038269          156 AGSGSHILTRVITNL-KIGKSDIGKLGMAAGIHSDMITMLIICIGAVFVLPQGNNTQEQIQSAIKMSASLIFQSVFAAKV  234 (792)
Q Consensus       156 s~Ts~~vv~~iL~el-~ll~s~~g~l~l~~a~i~Di~~~~ll~i~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~v  234 (792)
                      + |+.+-..-++.=+ +..+..+....++-|++||+.++++.++++.    + +..      +.+...+..++.++    
T Consensus       131 A-TDIAFAlgvL~llG~rvP~~Lr~FLlaLAIvDDlgAI~VIA~FYt----~-~i~------~~~L~~a~~~~~~l----  194 (389)
T PRK09560        131 A-TDIAFALGVLALLGKRVPVSLKVFLLALAIIDDLGAIVIIALFYT----S-DLS------LPALALAAIAIAVL----  194 (389)
T ss_pred             H-HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhHhheeeecC----C-CCC------HHHHHHHHHHHHHH----
Confidence            1 2222222222212 2367788889999999999999998886642    2 121      33333322222211    


Q ss_pred             hHHHHHHHhhhcCCCCcccchhHHHHHHHHHHHHHHhhhhCchhhHHHHHHhhhcCCCCcc------hHHHHHHHhHHHH
Q 038269          235 SPVFMNWINNENPEGKAMKGTHLVLSLAFMVAVCSCSPFYGYSPILSAFMAGIFFPSEGRM------SKWTVGKVNYLLS  308 (792)
Q Consensus       235 ~r~~~~~i~~~~~~~~~~~e~~~~~il~~~l~~~~~ae~~G~~~~lgafvaGl~l~~~~~~------~~~l~~kl~~~~~  308 (792)
                            ++.+|..    ++....+..+..++  =+....-|+|+.++..++|+.+|...+.      .+++++++++.+.
T Consensus       195 ------~~ln~~~----v~~~~~Y~~~G~~l--W~~~l~SGvHaTiAGV~la~~iP~~~~~~~~~~pl~rleh~L~p~v~  262 (389)
T PRK09560        195 ------FLLNRLG----VTKLTPYLIVGAIL--WFAVLKSGVHATLAGVVLAFCIPLKGKKGDEESPLHHLEHALHPWVA  262 (389)
T ss_pred             ------HHHHHcC----CccchHHHHHHHHH--HHHHHHccccHHHHHHHHHHhccccCCCCCCCCHHHHHHHHhhhhhh
Confidence                  1122221    22333444433222  1233468999999999999999974321      3578889999988


Q ss_pred             hhhhHHH-HHhhcccccccccc-cccchhHHHHHHHHHHHHhhhHHHHHHHHHhh----------CCChHHHHHHHHHhh
Q 038269          309 TLYYPIF-FFWMGFHAKLFTFE-ADTLGTWGRFFFLIVISTAGKVVGTVICGLML----------GFHWPESVSLGLLLS  376 (792)
Q Consensus       309 ~~~~Plf-F~~~Gl~~d~~~l~-~~~~~~~~~~~~li~~~~~~K~l~~~l~~~~~----------~~~~re~~~lg~~l~  376 (792)
                      .+.+|+| |.-.|..++-..+. ..++    ....+++..+++|.++.+..+++.          +++|++-..+|.+-+
T Consensus       263 ~~IlPlFAlaNAGV~l~~~~~~~~~~p----v~~gI~~GLv~GK~lGI~~~s~l~vkl~~~~lP~g~~w~~l~gv~~L~G  338 (389)
T PRK09560        263 FAILPLFAFANAGVSLAGISLSSLTSP----VPLGIALGLFLGKQVGVFGFSWLAVKLGLAKLPEGANWKQIYGVSVLCG  338 (389)
T ss_pred             hhhHHHHHhhcCCeeecCCcHHhccCc----HHHHHHHHHHhcchHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHH
Confidence            8889999 88889888421121 1112    344566777889999988887652          578999999998777


Q ss_pred             hhhHHHHHHHHHhhc-ccccChhhHHHHHHHHHHHHhhhhHHHH
Q 038269          377 AKGHFYIFLAIMGAV-HNYITHTTAASLVIMIFFTIVHTPFVVQ  419 (792)
Q Consensus       377 ~kG~v~l~l~~~~~~-~~~i~~~~~~~lv~~~vl~~~~~~~li~  419 (792)
                      .-=++++.+++.++. .....++.=..+++.++++.+++-.+.+
T Consensus       339 IGFTmSLFIa~LAF~~~~~~~~~aKigIL~~S~~aai~g~~~l~  382 (389)
T PRK09560        339 IGFTMSLFIGSLAFGASEELLTEARLGILLGSLLSAILGYLLLR  382 (389)
T ss_pred             HHHHHHHHHHHhhcCCCchhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            777899999998883 2112233333334445555555554444

>PRK14855 nhaA pH-dependent sodium/proton antiporter; Provisional

Probab=99.18  E-value=4.6e-09  Score=114.35  Aligned_cols=294  Identities=14%  Similarity=0.163  Sum_probs=176.1

Q ss_pred             HHHHHHHHHHH-HHHHHHhhccChhhhh---cCCccc---chHhHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHH
Q 038269           83 TLNYIVEFGMI-CYMFVLGLEMDPYVIF---KPPTRD---AIVAYGGMLSTFILGCSLTPFLHYSTHRKIVVAITLSFTL  155 (792)
Q Consensus        83 ~l~~l~~lgl~-~llF~~Gle~d~~~l~---~~~~~~---~~ia~~~~l~p~~~~~~~~~~l~~~~~~~~~~al~lg~~l  155 (792)
                      .+....+=|++ +|.|.+|+|+..+.+.   ++.|++   ..-|+.|+++|.++    +..++.+...    .--+|+-+
T Consensus        62 sl~~wINDgLMaiFFf~VGLEIKrE~l~GeLs~~r~a~lPiiAAlGGmivPAlI----y~~~n~~~~~----~~GWgIPm  133 (423)
T PRK14855         62 SLEHWVNDGLMAVFFLLVGLEIKRELLIGELSSPRQAALAVVAALGGMLVPAAL----YTALNAGGPG----ASGWGVPM  133 (423)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCChHHHHHHHHHHHhchHHHHHH----HheeecCCCc----cCcccccc
Confidence            45555555655 6888899999988875   344444   45666778888754    3333322100    11222222


Q ss_pred             hhccHHHHHHHHHhc-CCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHHHHHHHHHH
Q 038269          156 AGSGSHILTRVITNL-KIGKSDIGKLGMAAGIHSDMITMLIICIGAVFVLPQGNNTQEQIQSAIKMSASLIFQSVFAAKV  234 (792)
Q Consensus       156 s~Ts~~vv~~iL~el-~ll~s~~g~l~l~~a~i~Di~~~~ll~i~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~v  234 (792)
                      + |+.+-...++.=+ +..+..+....++-|++||+.++++.++++.    + +..      +.+..++.+++.++    
T Consensus       134 A-TDIAFAlgvLallG~rvP~~LrvFLlaLAIvDDlgAI~VIAlFYt----~-~i~------~~~L~~a~~~~~~l----  197 (423)
T PRK14855        134 A-TDIAFALGVLALLGSRVPLGLKVFLTALAIVDDLGAVLVIALFYT----S-GLN------LLALLLAALTWALA----  197 (423)
T ss_pred             H-HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhhhhheeeEeecC----C-CCC------HHHHHHHHHHHHHH----
Confidence            2 2222222222222 3367778889999999999999998886642    2 121      33332222222111    


Q ss_pred             hHHHHHHHhhhcCCCCcccchhHHHHHHHHHHHHHHhhhhCchhhHHHHHHhhhcCCCCc-c------------------
Q 038269          235 SPVFMNWINNENPEGKAMKGTHLVLSLAFMVAVCSCSPFYGYSPILSAFMAGIFFPSEGR-M------------------  295 (792)
Q Consensus       235 ~r~~~~~i~~~~~~~~~~~e~~~~~il~~~l~~~~~ae~~G~~~~lgafvaGl~l~~~~~-~------------------  295 (792)
                            ++.+|..    ++....++.+..++  =+....-|+|+.++..+.|+++|..++ .                  
T Consensus       198 ------~~ln~~~----v~~~~~Y~~~G~~l--W~~~l~SGVHaTiAGV~lal~iP~~~~~~~~~~~~~~~~~~~~~~~~  265 (423)
T PRK14855        198 ------LLAGRLG----VTSLKIYAVLGALL--WFFVLKSGLHPTVAGVLLALAVPIRRRDPLPYLASLLDAAAPGRPEV  265 (423)
T ss_pred             ------HHHHHcC----CccccHHHHHHHHH--HHHHHHhcccHHHHHHHHHHhccccccccchhHHHHHHHhhcccchh
Confidence                  1122221    22333344333222  123457899999999999999997411 1                  


Q ss_pred             ------------------hHHHHHHHhHHHHhhhhHHH-HHhhcccccccccccccchhHHHHHHHHHHHHhhhHHHHHH
Q 038269          296 ------------------SKWTVGKVNYLLSTLYYPIF-FFWMGFHAKLFTFEADTLGTWGRFFFLIVISTAGKVVGTVI  356 (792)
Q Consensus       296 ------------------~~~l~~kl~~~~~~~~~Plf-F~~~Gl~~d~~~l~~~~~~~~~~~~~li~~~~~~K~l~~~l  356 (792)
                                        .+++++.+++.+..+.+|+| |+-.|..++-..+   ++    ....+++..+++|.++.+.
T Consensus       266 ~~~~~~~~~~~~~~~~~Pl~rleh~L~p~vaf~IlPlFAfaNAGV~l~~~~~---~p----v~lGI~~GLvvGK~lGI~~  338 (423)
T PRK14855        266 VGARLRDLEDLLERAQSPLHRLEHALHPWSTFLILPVFALFNAGVSVSGGGL---GT----VSLGVFLGLLLGKPLGVVG  338 (423)
T ss_pred             hhHHHHhhhhhccccCCHHHHHHHHhhhhHHHhhHHHHHhhcCCeeecCCCC---Cc----HHHHHHHHHHhcchHHHHH
Confidence                              24577788888888899999 8888988843221   12    3445567778899999888


Q ss_pred             HHHhh----------CCChHHHHHHHHHhhhhhHHHHHHHHHhhcccccChhhHHHHHHHHHHHHhhhhHHHH
Q 038269          357 CGLML----------GFHWPESVSLGLLLSAKGHFYIFLAIMGAVHNYITHTTAASLVIMIFFTIVHTPFVVQ  419 (792)
Q Consensus       357 ~~~~~----------~~~~re~~~lg~~l~~kG~v~l~l~~~~~~~~~i~~~~~~~lv~~~vl~~~~~~~li~  419 (792)
                      .++..          +++|++-.-+|++-+.-=++++.+++.+++.....++.=-.+++.++++.+++..+.+
T Consensus       339 ~s~lavkl~~a~lP~g~~w~~l~gv~~LaGIGFTmSLFIa~LAF~~~~~~~~aKigIL~~S~~aai~G~~~L~  411 (423)
T PRK14855        339 GAWLAVRLGLASLPRRVNWLHMLGAGLLAGIGFTMSLFISNLAFADAALLTQAKLGVLAASVLAALLGAGWLW  411 (423)
T ss_pred             HHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhCCCchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            87653          5789999999997777778999999998853323333333444555555555554544

>PRK14854 nhaA pH-dependent sodium/proton antiporter; Provisional

Probab=99.14  E-value=1.3e-08  Score=109.02  Aligned_cols=299  Identities=15%  Similarity=0.198  Sum_probs=175.7

Q ss_pred             HHHHHHHHHHH-HHHHHHhhccChhhhh---cCCccc---chHhHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHH
Q 038269           83 TLNYIVEFGMI-CYMFVLGLEMDPYVIF---KPPTRD---AIVAYGGMLSTFILGCSLTPFLHYSTHRKIVVAITLSFTL  155 (792)
Q Consensus        83 ~l~~l~~lgl~-~llF~~Gle~d~~~l~---~~~~~~---~~ia~~~~l~p~~~~~~~~~~l~~~~~~~~~~al~lg~~l  155 (792)
                      .+....+=|++ +|.|.+|+|+..+.+.   ++.|++   ..-|+.|+++|.++=..    ++....    ..--+|+-+
T Consensus        55 ~l~~WiNDgLMaiFFf~vGLEiKrE~~~GeLs~~r~a~lP~~AAlGGmivPAlIy~~----~n~~~~----~~~GW~IP~  126 (383)
T PRK14854         55 NLMHWINDGLMAIYFLYIGLEIKREIIVGTLSKPSNIITPAIAAFAGLAMPSLIYLS----INHDIK----VINGWAIPS  126 (383)
T ss_pred             cHHHHHHhhHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhchHHHHHHHHh----hccCCc----ccCcccccc
Confidence            44555555555 6888899999888765   444444   45667788888754333    322110    011112222


Q ss_pred             hh-ccHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHHHHHHHHHH
Q 038269          156 AG-SGSHILTRVITNLKIGKSDIGKLGMAAGIHSDMITMLIICIGAVFVLPQGNNTQEQIQSAIKMSASLIFQSVFAAKV  234 (792)
Q Consensus       156 s~-Ts~~vv~~iL~el~ll~s~~g~l~l~~a~i~Di~~~~ll~i~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~v  234 (792)
                      +. ++|.+-...+-- +..+..+.-..++-|++||+.++++.++++.    + +..      +.+..+...++.+  .++
T Consensus       127 ATDIAFAlgvLallG-~rvP~~lrvFLlaLAIvDDlgAI~VIAlFYt----~-~i~------~~~L~~A~~~~~~--l~~  192 (383)
T PRK14854        127 ATDIAFTLGILALLG-TRVPAKLKLLVITIAIFDDIAAIAIIAIFYT----K-SLS------LLSLSLGTLFILA--MII  192 (383)
T ss_pred             HHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHHhhhhHhheeeecC----C-Ccc------HHHHHHHHHHHHH--HHH
Confidence            11 333333322222 3367788888899999999999998886642    2 221      2222222211111  111


Q ss_pred             hHHHHHHHhhhcCCCCcccchhHHHHHHHHHHHHHHhhhhCchhhHHHHHHhhhcCCCCc----chHHHHHHHhHHHHhh
Q 038269          235 SPVFMNWINNENPEGKAMKGTHLVLSLAFMVAVCSCSPFYGYSPILSAFMAGIFFPSEGR----MSKWTVGKVNYLLSTL  310 (792)
Q Consensus       235 ~r~~~~~i~~~~~~~~~~~e~~~~~il~~~l~~~~~ae~~G~~~~lgafvaGl~l~~~~~----~~~~l~~kl~~~~~~~  310 (792)
                             +.|+..    ++....+.++..++  =+....-|+|+.++..+.|+++|...+    -.+++++++++.+..+
T Consensus       193 -------~nr~~~----v~~~~~Y~~~G~~l--W~~~l~SGvHaTiAGV~~a~~iP~~~~~~~~pl~rleh~L~p~v~~~  259 (383)
T PRK14854        193 -------CNRIFK----INRSSVYVVLGFFA--WFCTIKSGVHATLAGFTTALCIPFRENDKDSPANFMEDSLHPWIIYF  259 (383)
T ss_pred             -------HHHhcC----CceehHHHHHHHHH--HHHHHHhcccHHHHHHHHHHhcccCCCCCCCHHHHHHHHhhchHHHh
Confidence                   122111    22233343333221  223457899999999999999997321    1357888999999999


Q ss_pred             hhHHH-HHhhcccccccccccccchhHHHHHHHHHHHHhhhHHHHHHHHHhh----------CCChHHHHHHHHHhhhhh
Q 038269          311 YYPIF-FFWMGFHAKLFTFEADTLGTWGRFFFLIVISTAGKVVGTVICGLML----------GFHWPESVSLGLLLSAKG  379 (792)
Q Consensus       311 ~~Plf-F~~~Gl~~d~~~l~~~~~~~~~~~~~li~~~~~~K~l~~~l~~~~~----------~~~~re~~~lg~~l~~kG  379 (792)
                      .+|+| |.-.|..++-..+..   ..-.....+++..+++|.++.+..+++.          +++|++-..+|++-+.-=
T Consensus       260 IlPlFA~aNAGV~l~~~~~~~---~~~pv~~GI~~GL~~GK~lGI~~~s~lavkl~~~~lP~g~~w~~l~gv~~L~GIGF  336 (383)
T PRK14854        260 ILPVFAFANAGISFSGISFSI---LFEPITLGIILGLFVGKQLGIFSILAVFKKLKWFKLGESFSNLQLYGISLLCGIGF  336 (383)
T ss_pred             hHHHHHhhcCCeeeccCcHHh---hcCcHHHHHHHHHHhcchHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHH
Confidence            99999 888898884211211   0112344556777889999988887652          568999999999777777


Q ss_pred             HHHHHHHHHhhcccccChhhHHHHHHHHHHHHhhhhHHHH
Q 038269          380 HFYIFLAIMGAVHNYITHTTAASLVIMIFFTIVHTPFVVQ  419 (792)
Q Consensus       380 ~v~l~l~~~~~~~~~i~~~~~~~lv~~~vl~~~~~~~li~  419 (792)
                      ++++.+++.+++.....++.=-.+++.++++.+++-.+.+
T Consensus       337 TmSLFIa~LAF~~~~~~~~aKigIL~gS~~aai~G~~~l~  376 (383)
T PRK14854        337 TMSLFIGVLAFNDTHLLNAIKIGVVVGSVLSGFFGYIVLR  376 (383)
T ss_pred             HHHHHHHHhhCCCcchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            8999999998853212223333333445555555554443

>PRK09561 nhaA pH-dependent sodium/proton antiporter; Reviewed

Probab=99.13  E-value=1.1e-08  Score=110.08  Aligned_cols=298  Identities=15%  Similarity=0.204  Sum_probs=175.5

Q ss_pred             HHHHHHHHHHH-HHHHHHhhccChhhhh---cCCccc---chHhHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHH
Q 038269           83 TLNYIVEFGMI-CYMFVLGLEMDPYVIF---KPPTRD---AIVAYGGMLSTFILGCSLTPFLHYSTHRKIVVAITLSFTL  155 (792)
Q Consensus        83 ~l~~l~~lgl~-~llF~~Gle~d~~~l~---~~~~~~---~~ia~~~~l~p~~~~~~~~~~l~~~~~~~~~~al~lg~~l  155 (792)
                      .+....+=|++ +|.|.+|+|+..+.+.   ++.|++   ..-|+.|+++|.++=.    .++.+...   ..--+|+-+
T Consensus        58 ~l~~wiNDgLMaiFFf~vGLEiKrE~~~GeL~~~r~a~lPi~AAlGGmivPAliy~----~~n~~~~~---~~~GWaIP~  130 (388)
T PRK09561         58 PLLLWINDGLMAVFFLLIGLEVKRELLEGSLASRRQAALPVIAAIGGMLVPALIYL----LFNYADPV---TREGWAIPA  130 (388)
T ss_pred             cHHHHHHhhHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhchHHHHHHHh----heecCCCc---ccCcccccc
Confidence            34555555555 6888899999988875   344444   4566677888875433    33221100   001112111


Q ss_pred             hhccHHHHHHHHHhc-CCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHHHHHHHHHH
Q 038269          156 AGSGSHILTRVITNL-KIGKSDIGKLGMAAGIHSDMITMLIICIGAVFVLPQGNNTQEQIQSAIKMSASLIFQSVFAAKV  234 (792)
Q Consensus       156 s~Ts~~vv~~iL~el-~ll~s~~g~l~l~~a~i~Di~~~~ll~i~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~v  234 (792)
                      + |+.+-..-++.=+ +..+..+....++-|++||+.++++.++++.    + +.      ++.+..+...++.++    
T Consensus       131 A-TDIAFalgvlallG~rvP~~LrvFLlaLAIvDDlgAI~VIAlFYt----~-~i------~~~~L~~a~~~~~~l----  194 (388)
T PRK09561        131 A-TDIAFALGVLALLGSRVPVALKIFLLALAIIDDLGAIVIIALFYT----S-DL------SMVSLGVAAVAIAVL----  194 (388)
T ss_pred             H-HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhHhheeeecC----C-Cc------cHHHHHHHHHHHHHH----
Confidence            1 2222122222212 3367788899999999999999998886642    2 22      133332222221111    


Q ss_pred             hHHHHHHHhhhcCCCCcccchhHHHHHHHHHHHHHHhhhhCchhhHHHHHHhhhcCCCCcc----hHHHHHHHhHHHHhh
Q 038269          235 SPVFMNWINNENPEGKAMKGTHLVLSLAFMVAVCSCSPFYGYSPILSAFMAGIFFPSEGRM----SKWTVGKVNYLLSTL  310 (792)
Q Consensus       235 ~r~~~~~i~~~~~~~~~~~e~~~~~il~~~l~~~~~ae~~G~~~~lgafvaGl~l~~~~~~----~~~l~~kl~~~~~~~  310 (792)
                            ++.+|..    ++....+.++..++  =+....-|+|+.++..+.|+.+|...+.    .+++++++++.+..+
T Consensus       195 ------~~ln~~~----v~~~~~Y~~~G~~l--W~~~l~SGvHaTiAGV~la~~iP~~~~~~~~pl~rleh~L~p~v~~~  262 (388)
T PRK09561        195 ------AVLNLCG----VRRTSVYILVGVVL--WVAVLKSGVHATLAGVIVGFFIPLKEKHGRSPAERLEHGLHPWVAFL  262 (388)
T ss_pred             ------HHHHHcC----CccchHHHHHHHHH--HHHHHHccccHHHHHHHHHhhccccCCCCCCHHHHHHHHhhhhhhhe
Confidence                  1122221    22333444433222  2234578999999999999999974221    367889999999999


Q ss_pred             hhHHH-HHhhcccccccccc-cccchhHHHHHHHHHHHHhhhHHHHHHHHHhh----------CCChHHHHHHHHHhhhh
Q 038269          311 YYPIF-FFWMGFHAKLFTFE-ADTLGTWGRFFFLIVISTAGKVVGTVICGLML----------GFHWPESVSLGLLLSAK  378 (792)
Q Consensus       311 ~~Plf-F~~~Gl~~d~~~l~-~~~~~~~~~~~~li~~~~~~K~l~~~l~~~~~----------~~~~re~~~lg~~l~~k  378 (792)
                      .+|+| |.-.|..++-..+. ..++    ....+++..+++|.++.+..+++.          +++|++-.-+|++-+.-
T Consensus       263 IlPlFAfaNAGV~l~~~~~~~~~~p----v~lgV~~GL~~GK~lGI~~~~~l~vkl~~~~lP~g~~w~~l~gv~~L~GIG  338 (388)
T PRK09561        263 ILPLFAFANAGVSLQGVTLDGLTSP----LPLGIALGLFIGKPLGIFLFSWLAVKLKLAKLPEGTTFKQIYAVGVLCGIG  338 (388)
T ss_pred             eHHHHHhhcCCeeeccCcHHhhcCc----HHHHHHHHHHhcchHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHH
Confidence            99999 88888888321121 1112    334556777889999988887652          56899999999877777


Q ss_pred             hHHHHHHHHHhhcc--cccChhhHHHHHHHHHHHHhhhhHHHH
Q 038269          379 GHFYIFLAIMGAVH--NYITHTTAASLVIMIFFTIVHTPFVVQ  419 (792)
Q Consensus       379 G~v~l~l~~~~~~~--~~i~~~~~~~lv~~~vl~~~~~~~li~  419 (792)
                      =++++.+++.+++.  ....++.=-.+++.++++.+++..+.+
T Consensus       339 FTmSLFIa~LAF~~~~~~~~~~aKigIL~~S~~sai~g~~~l~  381 (388)
T PRK09561        339 FTMSIFIASLAFGGVDPELINYAKLGILIGSLLSAVIGYSWLR  381 (388)
T ss_pred             HHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            78899999988852  212222333333445555555554444

>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea

Probab=99.11  E-value=1.2e-09  Score=102.38  Aligned_cols=131  Identities=14%  Similarity=0.244  Sum_probs=98.5

Q ss_pred             eEEEEecCCCChhhHHHHHHHhcCCCCCCceEEEEEEeeecccchhhhhcccCccccccchhhhhhhhHHHHHHHHHhhh
Q 038269          446 QILLCLHGSQNITSTLNFLEISRGTANPGVAVYVTDMIELTDQIAATLVQNEGIDTVTVTDKAVMEMREEITTAVQSYVD  525 (792)
Q Consensus       446 rILvcv~~~~~~~~li~l~~~~~~~~~sp~~v~~lhLvel~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~  525 (792)
                      |||+|+.+.++.+.+++.+..+++.  .+.+++++|+++.+....+-   ..        + ...+..++.++.+.....
T Consensus         1 ~ILv~vd~s~~~~~~l~~a~~la~~--~~~~v~ll~v~~~~~~~~~~---~~--------~-~~~~~~~~~~~~~~~~~~   66 (132)
T cd01988           1 RILVPVANPNTARDLLELAAALARA--QNGEIIPLNVIEVPNHSSPS---QL--------E-VNVQRARKLLRQAERIAA   66 (132)
T ss_pred             CEEEecCCchhHHHHHHHHHHHhhc--CCCeEEEEEEEecCCCCCcc---hh--------H-HHHHHHHHHHHHHHHHhh
Confidence            6999999999999999999999865  45689999999976533210   00        0 112234556666665554


Q ss_pred             ccCcceEEEEeEeecCCCChhHHHHHHHhhcCCcEEEecCCCCccCCCccccCCcchhHHHHHHhhhCCCceEEE
Q 038269          526 ENGGGITLKRMLALSTFSGMPQDICILAEDLMVSLIILPFHKRQLEDGTLDEGHPGFRYVNRKLLRNATCSVGIL  600 (792)
Q Consensus       526 ~~~~~v~v~~~t~vs~~~~m~~dI~~~a~e~~~~liilp~h~~~~~~g~~~~~~~~~~~~n~~vl~~apCsVgIl  600 (792)
                        ..++.+++.+..+  .+..++||+.|++.++|+|++|.|+++...      +..+++.+.+|++++||+|.|+
T Consensus        67 --~~g~~~~~~~~~~--~~~~~~I~~~a~~~~~dlIV~G~~~~~~~~------~~~lGs~~~~v~~~~~~pvlvv  131 (132)
T cd01988          67 --SLGVPVHTIIRID--HDIASGILRTAKERQADLIIMGWHGSTSLR------DRLFGGVIDQVLESAPCDVAVV  131 (132)
T ss_pred             --hcCCceEEEEEec--CCHHHHHHHHHHhcCCCEEEEecCCCCCcc------ceecCchHHHHHhcCCCCEEEe
Confidence              2357788888777  679999999999999999999999765432      2357788899999999998764

Na+/H+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na+ /H+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na+ for H+ in an electroneutral manner, and this activity is carried out by a family of Na+ /H+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity wit h other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the regio

>PF06965 Na_H_antiport_1: Na+/H+ antiporter 1; InterPro: IPR004670 NhaA is a sodium ion/proton antiporter that uses the proton electrochemical gradient to expel sodium ions from the cytoplasm and functions primarily in the adaptation to high salinity at alkaline pH

Probab=99.02  E-value=2.4e-09  Score=115.11  Aligned_cols=289  Identities=17%  Similarity=0.228  Sum_probs=159.2

Q ss_pred             HHHHHHHHHH-HHHHHHhhccChhhhh---cCCccc---chHhHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHh
Q 038269           84 LNYIVEFGMI-CYMFVLGLEMDPYVIF---KPPTRD---AIVAYGGMLSTFILGCSLTPFLHYSTHRKIVVAITLSFTLA  156 (792)
Q Consensus        84 l~~l~~lgl~-~llF~~Gle~d~~~l~---~~~~~~---~~ia~~~~l~p~~~~~~~~~~l~~~~~~~~~~al~lg~~ls  156 (792)
                      +....+=|++ +|.|.+|+|+..+.+.   ++.|++   ..-++.|+++|.+    ++..++.....   ..--+|+- .
T Consensus        55 l~~wiNDgLMaiFFf~vGLEiKrE~~~GeL~~~r~a~lP~~AAlGGm~vPal----Iyl~~n~~~~~---~~~GW~IP-~  126 (378)
T PF06965_consen   55 LHHWINDGLMAIFFFVVGLEIKRELLVGELSSPRKAALPIIAALGGMLVPAL----IYLAFNAGGPE---AAHGWAIP-M  126 (378)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSSTTTSHHHHHHHHHHTTTTHH----HHGGG--SSTT---HHHHTSSS-S
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHhCCCCCChhhhhhHHHHHHhcchHHHH----HHheeecCCCC---cCceEEec-c
Confidence            4444555554 7888899999888775   444544   3455667777764    33344332110   11222322 2


Q ss_pred             hccHHHHHHHHHhc-CCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHHHHHHHHHHh
Q 038269          157 GSGSHILTRVITNL-KIGKSDIGKLGMAAGIHSDMITMLIICIGAVFVLPQGNNTQEQIQSAIKMSASLIFQSVFAAKVS  235 (792)
Q Consensus       157 ~Ts~~vv~~iL~el-~ll~s~~g~l~l~~a~i~Di~~~~ll~i~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~v~  235 (792)
                      .|+.+-...++.=+ +..+..+....++-|++||+.++++.++++.    + +.      ++.+......++.+  .   
T Consensus       127 ATDIAFAlgvlal~G~rvP~~lrvFLlaLAIvDDlgaIlVIA~FYt----~-~i------~~~~L~~a~~~~~~--l---  190 (378)
T PF06965_consen  127 ATDIAFALGVLALLGKRVPASLRVFLLALAIVDDLGAILVIALFYT----D-GI------SLLWLLLAAAALLL--L---  190 (378)
T ss_dssp             ---HHHHHHHHHSS-SSS-SSSHHHHHHHHHHHHHHHHHHHHHHS----------------HHHHHHHHHHHHH--H---
T ss_pred             cccHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhhhhHhheeeeeC----C-CC------CHHHHHHHHHHHHH--H---
Confidence            23333334444323 3357778899999999999999998887652    1 11      13333222221111  1   


Q ss_pred             HHHHHHHhhhcCCCCcccchhHHHHHHHHHHHHHHhhhhCchhhHHHHHHhhhcCCCCcch--------HHHHHHHhHHH
Q 038269          236 PVFMNWINNENPEGKAMKGTHLVLSLAFMVAVCSCSPFYGYSPILSAFMAGIFFPSEGRMS--------KWTVGKVNYLL  307 (792)
Q Consensus       236 r~~~~~i~~~~~~~~~~~e~~~~~il~~~l~~~~~ae~~G~~~~lgafvaGl~l~~~~~~~--------~~l~~kl~~~~  307 (792)
                           |..+|..    ++....+..+..  ..=+....-|+|+.++..+.|+.+|..++.+        +++++++++.+
T Consensus       191 -----~~l~r~~----v~~~~~Y~~~G~--~lW~~~l~SGvHaTiAGV~~al~iP~~~~~~~~~~~~pl~rle~~L~p~v  259 (378)
T PF06965_consen  191 -----FVLNRLG----VRSLWPYLLLGI--LLWYAVLKSGVHATIAGVLLALFIPARPRAGEREAESPLERLEHALHPWV  259 (378)
T ss_dssp             -----HHHHHTT-------THHHHHHHH--HHHHHTTTSHHHHHHHHHHHHHHS---GGGS----S-HHHHHHHHHHHHH
T ss_pred             -----HHHHHCC----CceehHHHHHHH--HHHHHHHHcCCCHHHHHHHHheeeeccCCCCcccCCCHHHHHHHHhhhhh
Confidence                 1122221    122333433322  2222345789999999999999999865442        47888889998


Q ss_pred             HhhhhHHH-HHhhcccccccccccccchhHHHHHHHHHHHHhhhHHHHHHHHHhh----------CCChHHHHHHHHHhh
Q 038269          308 STLYYPIF-FFWMGFHAKLFTFEADTLGTWGRFFFLIVISTAGKVVGTVICGLML----------GFHWPESVSLGLLLS  376 (792)
Q Consensus       308 ~~~~~Plf-F~~~Gl~~d~~~l~~~~~~~~~~~~~li~~~~~~K~l~~~l~~~~~----------~~~~re~~~lg~~l~  376 (792)
                      ..+.+|+| |+-.|..++-..+..  . .-.....+++..+++|.++.+..++..          +++|++-..+|.+-+
T Consensus       260 ~~~IlPlFAlaNAGV~l~~~~~~~--~-~~pv~lGI~~GLvvGK~lGI~~~~~la~kl~~~~lP~~~~w~~l~gv~~LaG  336 (378)
T PF06965_consen  260 AFVILPLFALANAGVSLSGSSLGD--L-TSPVTLGIILGLVVGKPLGIFLFSWLAVKLGLARLPDGVSWRHLYGVGLLAG  336 (378)
T ss_dssp             HHTHHHHHHHHHS----SSS---T--H-HHHSSTTTTHHHHHTTGGGSTTTTTTTSS-TTT----S--GGGGTTHHHHTT
T ss_pred             hhhhHHhHhheeCceEEecCchHh--h-hChHHHHHHHHHHcccchhhhhHHHHHHHhCCCCCCCCCCHHHHHHHHHHHH
Confidence            88999999 899999888543321  1 112223446677889999988876552          468899888888777


Q ss_pred             hhhHHHHHHHHHhhcccccChhhHHHHHHHHHHH
Q 038269          377 AKGHFYIFLAIMGAVHNYITHTTAASLVIMIFFT  410 (792)
Q Consensus       377 ~kG~v~l~l~~~~~~~~~i~~~~~~~lv~~~vl~  410 (792)
                      .-=++++.+++.+++.....++.--.+++.++++
T Consensus       337 IGFTmSLFIa~LAF~~~~~~~~aK~gIL~~S~~a  370 (378)
T PF06965_consen  337 IGFTMSLFIAGLAFDDPALQNAAKLGILIGSLLA  370 (378)
T ss_dssp             --HHHHHHHHHHHSTT-SSHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHcCChhhhhHHHHHHHHHHHHH
Confidence            7778999999999887433333333333333333

NhaA is also believed to be responsible for adaptation to alkaline pH when sodium is available. NhaA is one of the three known sodium ion/proton antiporters in Escherichia coli along with NhaB and ChaA, though there are other mechanisms for Na+ extrusion such as NDH-I complicating the determination of the precise roles of each of the transporters [].; GO: 0006814 sodium ion transport, 0006885 regulation of pH, 0016021 integral to membrane; PDB: 3FI1_A 1ZCD_A.

>COG3004 NhaA Na+/H+ antiporter [Inorganic ion transport and metabolism]

Probab=98.84  E-value=7.4e-07  Score=92.17  Aligned_cols=295  Identities=14%  Similarity=0.186  Sum_probs=172.6

Q ss_pred             HHHHHHHHHH-HHHHHHhhccChhhhh---cCCccc---chHhHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHh
Q 038269           84 LNYIVEFGMI-CYMFVLGLEMDPYVIF---KPPTRD---AIVAYGGMLSTFILGCSLTPFLHYSTHRKIVVAITLSFTLA  156 (792)
Q Consensus        84 l~~l~~lgl~-~llF~~Gle~d~~~l~---~~~~~~---~~ia~~~~l~p~~~~~~~~~~l~~~~~~~~~~al~lg~~ls  156 (792)
                      +...-+=|++ +|.+.+|+|+..+.+.   ++++++   ..-|+.|++.|..+    +..++.... ..  .--++ +-+
T Consensus        62 l~~WINDgLMAvFFl~iGLEvKrEll~G~L~s~~~a~~P~iAA~GGmi~PAli----y~~~n~~~p-~~--~~GWa-IP~  133 (390)
T COG3004          62 LLLWINDGLMAVFFLLIGLEVKRELLEGQLSSWRNAAFPVIAAIGGMIAPALI----YLALNAGDP-AT--LEGWA-IPM  133 (390)
T ss_pred             HHHHhhhHHHHHHHHHHHHHHHHHHHcccccCchhhhhHHHHHhccchhhhhH----hheeecCCh-hh--hcCcC-ccc
Confidence            3444455555 5667799999988886   455544   34555667777643    333433210 00  00111 112


Q ss_pred             hccHHHHHHHHHhc-CCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHHHHHHHHHHh
Q 038269          157 GSGSHILTRVITNL-KIGKSDIGKLGMAAGIHSDMITMLIICIGAVFVLPQGNNTQEQIQSAIKMSASLIFQSVFAAKVS  235 (792)
Q Consensus       157 ~Ts~~vv~~iL~el-~ll~s~~g~l~l~~a~i~Di~~~~ll~i~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~v~  235 (792)
                      .|+.+-...++.=+ +..++.+.-..++-+++||+-++++.++.+.     .+.+      +.+...+.++..+ .    
T Consensus       134 ATDiAFAlGvlaLLG~rVP~sLKiFLlaLAI~DDlgAIvIIAlFYt-----~~Ls------~~al~~a~~~i~v-L----  197 (390)
T COG3004         134 ATDIAFALGVLALLGSRVPLSLKIFLLALAIIDDLGAIVIIALFYT-----TDLS------MAALGIAALAIAV-L----  197 (390)
T ss_pred             HHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcchhhhhhhhhc-----CCcc------HHHHHHHHHHHHH-H----
Confidence            23332233333322 3478888899999999999999988887642     2221      2222221111111 1    


Q ss_pred             HHHHHHHhhhcCCCCcccchhHHHHHHHHHHHHHHhhhhCchhhHHHHHHhhhcCCCCcc----hHHHHHHHhHHHHhhh
Q 038269          236 PVFMNWINNENPEGKAMKGTHLVLSLAFMVAVCSCSPFYGYSPILSAFMAGIFFPSEGRM----SKWTVGKVNYLLSTLY  311 (792)
Q Consensus       236 r~~~~~i~~~~~~~~~~~e~~~~~il~~~l~~~~~ae~~G~~~~lgafvaGl~l~~~~~~----~~~l~~kl~~~~~~~~  311 (792)
                       ..++++.-        +....+++...++-.+  -..-|+|..++..+.|+.+|-..+.    -+++++.+.+.+..+.
T Consensus       198 -~~lN~~~v--------~~l~~Y~~~gviLW~~--vlkSGVHATLAGVi~~f~IPl~~k~~~spl~~leh~L~pwvaf~I  266 (390)
T COG3004         198 -AVLNRLGV--------RRLSPYLLVGVILWIA--VLKSGVHATLAGVILAFFIPLKTKEGESPLERLEHALHPWVAFFI  266 (390)
T ss_pred             -HHHHHhCc--------hhhhHHHHHHHHHHHH--HHHhhhHHHHHHHHHHeeeeccCCCCCCcHHHHHHHhhhhHHHHH
Confidence             11233321        1222333333332222  2467999999999999999965432    3577888888888999


Q ss_pred             hHHH-HHhhccccc---ccccccccchhHHHHHHHHHHHHhhhHHHHHHHHHhh----------CCChHHHHHHHHHhhh
Q 038269          312 YPIF-FFWMGFHAK---LFTFEADTLGTWGRFFFLIVISTAGKVVGTVICGLML----------GFHWPESVSLGLLLSA  377 (792)
Q Consensus       312 ~Plf-F~~~Gl~~d---~~~l~~~~~~~~~~~~~li~~~~~~K~l~~~l~~~~~----------~~~~re~~~lg~~l~~  377 (792)
                      +|+| |.-.|..++   .+.+      .-...+.+++..+++|.++++..++..          +.+|++-..++++.+.
T Consensus       267 lPlFaFaNAGvsl~g~~~~~l------~s~l~lgI~lGL~~GKplGIf~fs~lAvkl~lA~lP~g~~~~qi~~v~iLcGI  340 (390)
T COG3004         267 LPLFAFANAGVSLQGVSLSGL------TSPLTLGIILGLFLGKPLGIFLFSWLAVKLKLAKLPEGISWKQIYGVSILCGI  340 (390)
T ss_pred             HHHHHHccCCccccccccccc------ccchHHHHHHHHHhcCcchhhhhHHHHHHhhhccCCCCCCHHHHHHHHHHHhh
Confidence            9999 888888776   2222      122345567778899999998887653          5689999999887777


Q ss_pred             hhHHHHHHHHHhhccc-ccChhhHHHHHHHHHHHHhhhhHHHH
Q 038269          378 KGHFYIFLAIMGAVHN-YITHTTAASLVIMIFFTIVHTPFVVQ  419 (792)
Q Consensus       378 kG~v~l~l~~~~~~~~-~i~~~~~~~lv~~~vl~~~~~~~li~  419 (792)
                      .=++++.+.+.+++.. ......--.+.....++.+++-...+
T Consensus       341 GFTMSlFI~~LAf~~~~~~~~~~klgIL~gS~~Sai~G~~~L~  383 (390)
T COG3004         341 GFTMSLFIASLAFGSEDELQTAAKLGILVGSFISAILGYSYLR  383 (390)
T ss_pred             hHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6788899988887653 22222222333344444444444433

>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases

Probab=98.28  E-value=1.1e-05  Score=77.05  Aligned_cols=143  Identities=10%  Similarity=0.190  Sum_probs=86.9

Q ss_pred             eEEEEecCCCChhhHHHHHHHhcCCCCCCceEEEEEEeeecccchhhhhcccCccccccchhhhhhhhHHHHHHHHHhhh
Q 038269          446 QILLCLHGSQNITSTLNFLEISRGTANPGVAVYVTDMIELTDQIAATLVQNEGIDTVTVTDKAVMEMREEITTAVQSYVD  525 (792)
Q Consensus       446 rILvcv~~~~~~~~li~l~~~~~~~~~sp~~v~~lhLvel~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~  525 (792)
                      +||+++...++....++.+..+...  ....++++|+++.+... +.  ................+..++.++.+....+
T Consensus         1 ~ILVavD~S~~s~~al~~a~~~a~~--~~~~l~ll~v~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~   75 (146)
T cd01989           1 SVAVAVDKDKKSKNALKWALDNLAT--KGQTIVLVHVHPPITSI-PS--SSGKLEVASAYKQEEDKEAKELLLPYRCFCS   75 (146)
T ss_pred             CEEEEecCccccHHHHHHHHHhccC--CCCcEEEEEeccCcccC-CC--CccchHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4899998888888888888887754  34689999998753211 10  0000000000000111122333333332222


Q ss_pred             ccCcceEEEEeEeecCCCChhHHHHHHHhhcCCcEEEecCCCCccCCCccccCCcchh-HHHHHHhhhCC--CceEEEec
Q 038269          526 ENGGGITLKRMLALSTFSGMPQDICILAEDLMVSLIILPFHKRQLEDGTLDEGHPGFR-YVNRKLLRNAT--CSVGILVD  602 (792)
Q Consensus       526 ~~~~~v~v~~~t~vs~~~~m~~dI~~~a~e~~~~liilp~h~~~~~~g~~~~~~~~~~-~~n~~vl~~ap--CsVgIlVd  602 (792)
                        ..++.++......  .+..+.|++.|++.++|+|+||-|.+......      .++ ++-++|+++||  |+| ++|.
T Consensus        76 --~~~~~~~~~~~~g--~~~~~~I~~~a~~~~~dlIV~Gs~g~~~l~~~------~~gssva~~Vi~~a~~~c~V-lvv~  144 (146)
T cd01989          76 --RKGVQCEDVVLED--DDVAKAIVEYVADHGITKLVMGASSDNHFSMK------FKKSDVASSVLKEAPDFCTV-YVVS  144 (146)
T ss_pred             --hcCCeEEEEEEeC--CcHHHHHHHHHHHcCCCEEEEeccCCCceeec------ccCCchhHHHHhcCCCCceE-EEEe
Confidence              2346666655544  57899999999999999999999866433211      233 47789999999  998 4465


Q ss_pred             CC
Q 038269          603 RG  604 (792)
Q Consensus       603 rg  604 (792)
                      +|
T Consensus       145 ~~  146 (146)
T cd01989         145 KG  146 (146)
T ss_pred             Cc
Confidence            54

The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. The N-terminal domain is homologous to the USP family which has a ATP binding fold. The N-terminal domain is predicted to be involved in ATP binding.

>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family

Probab=98.23  E-value=8.5e-06  Score=75.52  Aligned_cols=121  Identities=17%  Similarity=0.141  Sum_probs=84.1

Q ss_pred             eEEEEecCCCChhhHHHHHHHhcCCCCCCceEEEEEEeeecccchhhhhcccCccccccchhhhhhhhHHHHHHHHHhhh
Q 038269          446 QILLCLHGSQNITSTLNFLEISRGTANPGVAVYVTDMIELTDQIAATLVQNEGIDTVTVTDKAVMEMREEITTAVQSYVD  525 (792)
Q Consensus       446 rILvcv~~~~~~~~li~l~~~~~~~~~sp~~v~~lhLvel~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~  525 (792)
                      |||+|+...+.....++.+..++..  .+..++++|+++-...  +          .       .+..++.++.+....+
T Consensus         1 ~Ilv~vd~s~~s~~al~~a~~la~~--~~~~l~ll~v~~~~~~--~----------~-------~~~~~~~l~~~~~~~~   59 (124)
T cd01987           1 RILVCISGGPNAERLIRRAARLADR--LKAPWYVVYVETPRLN--R----------L-------SEAERRRLAEALRLAE   59 (124)
T ss_pred             CEEEEECCCcchHHHHHHHHHHHHH--hCCCEEEEEEecCccc--c----------C-------CHHHHHHHHHHHHHHH
Confidence            6899999889999999999988865  3467999999763210  0          0       0112334444444443


Q ss_pred             ccCcceEEEEeEeecCCCChhHHHHHHHhhcCCcEEEecCCCCccCCCccccCCcchhHHHHHHhhhC-CCceEE
Q 038269          526 ENGGGITLKRMLALSTFSGMPQDICILAEDLMVSLIILPFHKRQLEDGTLDEGHPGFRYVNRKLLRNA-TCSVGI  599 (792)
Q Consensus       526 ~~~~~v~v~~~t~vs~~~~m~~dI~~~a~e~~~~liilp~h~~~~~~g~~~~~~~~~~~~n~~vl~~a-pCsVgI  599 (792)
                      .  .++.  +.+..+  .+..+.|++.+++.++|+|++|.|.+.....      ..++++.++++++| ||+|-|
T Consensus        60 ~--~~~~--~~~~~~--~~~~~~I~~~~~~~~~dllviG~~~~~~~~~------~~~Gs~~~~v~~~a~~~~v~v  122 (124)
T cd01987          60 E--LGAE--VVTLPG--DDVAEAIVEFAREHNVTQIVVGKSRRSRWRE------LFRGSLVDRLLRRAGNIDVHI  122 (124)
T ss_pred             H--cCCE--EEEEeC--CcHHHHHHHHHHHcCCCEEEeCCCCCchHHH------HhcccHHHHHHHhCCCCeEEE
Confidence            2  2233  334445  6789999999999999999999997644321      23667789999999 999754

The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.

>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents

Probab=98.13  E-value=1.6e-05  Score=74.12  Aligned_cols=133  Identities=24%  Similarity=0.277  Sum_probs=86.1

Q ss_pred             eEEEEecCCCChhhHHHHHHHhcCCCCCCceEEEEEEeeecccchhhhhcccCccccccchhhhhhhhHHHHHHHH---H
Q 038269          446 QILLCLHGSQNITSTLNFLEISRGTANPGVAVYVTDMIELTDQIAATLVQNEGIDTVTVTDKAVMEMREEITTAVQ---S  522 (792)
Q Consensus       446 rILvcv~~~~~~~~li~l~~~~~~~~~sp~~v~~lhLvel~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~---~  522 (792)
                      |||+|+.+.++....++.+..+...  ....++++|+++.......-.....          ......+......+   .
T Consensus         4 ~Ilv~~d~~~~~~~al~~a~~la~~--~~~~i~~l~v~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~   71 (140)
T PF00582_consen    4 RILVAIDGSEESRRALRFALELAKR--SGAEITLLHVIPPPPQYSFSAAEDE----------ESEEEAEEEEQARQAEAE   71 (140)
T ss_dssp             EEEEEESSSHHHHHHHHHHHHHHHH--HTCEEEEEEEEESCHCHHHHHHHHH----------HHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHh--hCCeEEEEEeecccccccccccccc----------ccccccchhhhhhhHHHH
Confidence            7999998888888998888887754  4578999999997765443211000          00000011000000   1


Q ss_pred             hhhccCcceEEEEeEeecCCCChhHHHHHHHhhcCCcEEEecCCCCccCCCccccCCcchhHHHHHHhhhCCCceEEE
Q 038269          523 YVDENGGGITLKRMLALSTFSGMPQDICILAEDLMVSLIILPFHKRQLEDGTLDEGHPGFRYVNRKLLRNATCSVGIL  600 (792)
Q Consensus       523 ~~~~~~~~v~v~~~t~vs~~~~m~~dI~~~a~e~~~~liilp~h~~~~~~g~~~~~~~~~~~~n~~vl~~apCsVgIl  600 (792)
                      ...  ..+.........+  .+..+.|+..+++.++|+|++|.|++....+      ..++++.+++++++||+|-|+
T Consensus        72 ~~~--~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~dliv~G~~~~~~~~~------~~~gs~~~~l~~~~~~pVlvv  139 (140)
T PF00582_consen   72 EAE--AEGGIVIEVVIES--GDVADAIIEFAEEHNADLIVMGSRGRSGLER------LLFGSVAEKLLRHAPCPVLVV  139 (140)
T ss_dssp             HHH--HHTTSEEEEEEEE--SSHHHHHHHHHHHTTCSEEEEESSSTTSTTT------SSSHHHHHHHHHHTSSEEEEE
T ss_pred             HHh--hhccceeEEEEEe--eccchhhhhccccccceeEEEeccCCCCccC------CCcCCHHHHHHHcCCCCEEEe
Confidence            111  1123333344445  6899999999999999999999997433322      348899999999999998653

UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [] reveals an alpha/beta fold similar to that of the Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0577 protein, which binds ATP [], though UspA lacks ATP-binding activity.; GO: 0006950 response to stress; PDB: 3DLO_C 3QTB_A 2PFS_A 3TNJ_A 1JMV_D 3FH0_B 3FDX_B 3AB7_A 3AB8_A 2GM3_F ....

>PRK12460 2-keto-3-deoxygluconate permease; Provisional

Probab=98.11  E-value=0.00045  Score=72.98  Aligned_cols=257  Identities=11%  Similarity=0.126  Sum_probs=146.2

Q ss_pred             HHHHHHHHhhccChhhhhcCCcccchHhHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHhhccHHHHHHHHHhcC
Q 038269           92 MICYMFVLGLEMDPYVIFKPPTRDAIVAYGGMLSTFILGCSLTPFLHYSTHRKIVVAITLSFTLAGSGSHILTRVITNLK  171 (792)
Q Consensus        92 l~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~l~p~~~~~~~~~~l~~~~~~~~~~al~lg~~ls~Ts~~vv~~iL~el~  171 (792)
                      +..++|-.|-++|++...+..||...+-..-++++.+++.++..+++..... .-..+.+-++++.+.-..=..+..|++
T Consensus        51 l~~~~~~~Ga~I~~k~~~~~l~kg~~l~~~K~~~~~~~g~~~~~~~g~~g~~-Gls~laiiaa~~~~Ng~ly~al~~~yG  129 (312)
T PRK12460         51 LGAFLLCMGAQISLKAAPQALLKGGVLTITKLGVAIVIGLLVGKFFGAEGIF-GLSGLAIVAAMSNSNGGLYAALMGEFG  129 (312)
T ss_pred             HHHHHHHhcCeeeccccchhhhhhhhhhhHHHHHHHHHHHHHHHHcCccccc-chHHHHHHHHHhcCcHHHHHHHHHHcC
Confidence            3467899999999999988888888888888888999999988888642111 112355556666666666667777877


Q ss_pred             CCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhcCCCCc
Q 038269          172 IGKSDIGKLGMAAGIHSDMITMLIICIGAVFVLPQGNNTQEQIQSAIKMSASLIFQSVFAAKVSPVFMNWINNENPEGKA  251 (792)
Q Consensus       172 ll~s~~g~l~l~~a~i~Di~~~~ll~i~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~v~r~~~~~i~~~~~~~~~  251 (792)
                       -++|.|-             ..++++     ..+          +...   .+++..          .++.+ .|    
T Consensus       130 -~~~d~gA-------------~~~~sl-----~~G----------Pf~t---m~aLga----------~gLA~-ip----  162 (312)
T PRK12460        130 -DERDVGA-------------ISILSL-----NDG----------PFFT---MLALGA----------AGLAN-IP----  162 (312)
T ss_pred             -CHhhhhH-------------Hhhhhh-----ccC----------cHHH---HHHHHH----------HHHhc-CC----
Confidence             3455542             222211     111          1111   111111          11111 11    


Q ss_pred             ccchhHHHHHHHHHHHHHHhhhhCchhhHHHHHHhhhcCCCCcchHHHHHHHhHHHHhhhhHHHHHhhcccccccccccc
Q 038269          252 MKGTHLVLSLAFMVAVCSCSPFYGYSPILSAFMAGIFFPSEGRMSKWTVGKVNYLLSTLYYPIFFFWMGFHAKLFTFEAD  331 (792)
Q Consensus       252 ~~e~~~~~il~~~l~~~~~ae~~G~~~~lgafvaGl~l~~~~~~~~~l~~kl~~~~~~~~~PlfF~~~Gl~~d~~~l~~~  331 (792)
                         .  ...+.                .+=+++.|+++.|..   +.+.+.+++= ..+.+|++-+..|.++|++++...
T Consensus       163 ---~--~~lv~----------------lilpILiGmilGNld---~~~~~~l~~G-i~f~I~f~~f~LG~~lnl~~I~~~  217 (312)
T PRK12460        163 ---I--MALVA----------------ALLPLVLGMILGNLD---PDMRKFLTKG-GPLLIPFFAFALGAGINLSMLLQA  217 (312)
T ss_pred             ---h--HHHHH----------------HHHHHHHHHHHhccc---hhhHHHHhcc-ceEeHHHHHHHhcCCeeHHHHHHh
Confidence               0  00000                222556777777632   2344555543 456899999999999999766321


Q ss_pred             cchhHHHHHHHHHHHHhhhHHHHHHHHHhhCCChHHHHHHH--HHhhhhhHHHHHHHHHhhcccccChhhHHHHHHHHHH
Q 038269          332 TLGTWGRFFFLIVISTAGKVVGTVICGLMLGFHWPESVSLG--LLLSAKGHFYIFLAIMGAVHNYITHTTAASLVIMIFF  409 (792)
Q Consensus       332 ~~~~~~~~~~li~~~~~~K~l~~~l~~~~~~~~~re~~~lg--~~l~~kG~v~l~l~~~~~~~~~i~~~~~~~lv~~~vl  409 (792)
                      +   +. .+++.++..+.-....+...|++|.+.+-+..+|  ..-+.-|...++.+.  ...+..-+..-..+-.++++
T Consensus       218 G---~~-GIlL~v~vv~~t~~~~~~i~rllg~~~~~g~li~stAGnAIcgpAAVaAad--P~~~~~~~~Ataqvaa~viv  291 (312)
T PRK12460        218 G---LA-GILLGVLVTIVTGFFNIFADRLVGGTGIAGAAASSTAGNAVATPLAIAAAD--PSLAPVAAAATAQVAASVIV  291 (312)
T ss_pred             C---hH-HHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHhhHHHHHHHHHHHhc--hhHHHHHHHHHHHHHHHHHH
Confidence            1   21 2222233333445555666688898888887777  432222333332222  22222223333334557788


Q ss_pred             HHhhhhHHHHHhhhhhcc
Q 038269          410 TIVHTPFVVQNIIGRARK  427 (792)
Q Consensus       410 ~~~~~~~li~~l~~~~~~  427 (792)
                      |.+++|.+..|.+|+.++
T Consensus       292 Tail~P~~t~~~~k~~~~  309 (312)
T PRK12460        292 TAILTPLLTSWVAKKEAK  309 (312)
T ss_pred             HHHHHHHHHHHHHHHhcc
Confidence            888999999998887654

>PRK15456 universal stress protein UspG; Provisional

Probab=97.92  E-value=0.00016  Score=68.78  Aligned_cols=134  Identities=10%  Similarity=0.097  Sum_probs=80.6

Q ss_pred             eEEEEecCC--CChhhHHHHHHHhcCCCCCCceEEEEEEeeecccchhhhhcccCccccccchhhhhhhhHHHHHHHHHh
Q 038269          446 QILLCLHGS--QNITSTLNFLEISRGTANPGVAVYVTDMIELTDQIAATLVQNEGIDTVTVTDKAVMEMREEITTAVQSY  523 (792)
Q Consensus       446 rILvcv~~~--~~~~~li~l~~~~~~~~~sp~~v~~lhLvel~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~  523 (792)
                      |||+++...  ++....++.+..++..  . -.++++|+++-..... .  . .....  ..+ ......++..+.++.+
T Consensus         4 ~ILv~vD~S~~~~s~~al~~A~~la~~--~-~~l~llhv~~~~~~~~-~--~-~~~~~--~~~-~~~~~~~~~~~~l~~~   73 (142)
T PRK15456          4 TIIMPVDVFEMELSDKAVRHAEFLAQD--D-GVIHLLHVLPGSASLS-L--H-RFAAD--VRR-FEEHLQHEAEERLQTM   73 (142)
T ss_pred             cEEEeccCCchhHHHHHHHHHHHHHhc--C-CeEEEEEEecCccccc-c--c-ccccc--hhh-HHHHHHHHHHHHHHHH
Confidence            699999765  4677888888877643  2 3799999987542110 0  0 00000  000 0001112222223333


Q ss_pred             hhcc-CcceEEEEeEeecCCCChhHHHHHHHhhcCCcEEEecCCCCccCCCccccCCcchhHHHHHHhhhCCCceEE
Q 038269          524 VDEN-GGGITLKRMLALSTFSGMPQDICILAEDLMVSLIILPFHKRQLEDGTLDEGHPGFRYVNRKLLRNATCSVGI  599 (792)
Q Consensus       524 ~~~~-~~~v~v~~~t~vs~~~~m~~dI~~~a~e~~~~liilp~h~~~~~~g~~~~~~~~~~~~n~~vl~~apCsVgI  599 (792)
                      .+.. ..++.+++.+..   -+..++|++.|++.++|||+||-|++. ..      ...++++-++|++++||+|-|
T Consensus        74 ~~~~~~~~~~v~~~v~~---G~~~~~I~~~a~~~~~DLIVmG~~g~~-~~------~~llGS~a~~v~~~a~~pVLv  140 (142)
T PRK15456         74 VSHFTIDPSRIKQHVRF---GSVRDEVNELAEELGADVVVIGSRNPS-IS------THLLGSNASSVIRHANLPVLV  140 (142)
T ss_pred             HHHhCCCCcceEEEEcC---CChHHHHHHHHhhcCCCEEEEcCCCCC-cc------ceecCccHHHHHHcCCCCEEE
Confidence            2211 234666655544   478899999999999999999998642 22      134677789999999999854

>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea

Probab=97.90  E-value=0.00016  Score=67.33  Aligned_cols=130  Identities=15%  Similarity=0.126  Sum_probs=77.4

Q ss_pred             eEEEEeccCcChHHHHHHHHHHhcCCCeEEEEEEeeecCCCCcccccccccCCcchhhhhhhhhHHHHHHHHHhhcCCCc
Q 038269          620 NVAVIFIGGKDDREALAYASRVARHPAVKLTVIRFLLDNSENPQRRAATYKDNTAELEEEMKIDDECFAEFYERQVAEGH  699 (792)
Q Consensus       620 ~v~v~f~GG~ddreAL~~a~rma~~~~v~ltv~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~e~~~~~~~~~~  699 (792)
                      ||++|.-|.++.+.++++|.+|++.++.+++++|+.+.......        .  ..+.+++..++.+++..+... ...
T Consensus         1 ~ILv~vd~s~~~~~~l~~a~~la~~~~~~v~ll~v~~~~~~~~~--------~--~~~~~~~~~~~~~~~~~~~~~-~~g   69 (132)
T cd01988           1 RILVPVANPNTARDLLELAAALARAQNGEIIPLNVIEVPNHSSP--------S--QLEVNVQRARKLLRQAERIAA-SLG   69 (132)
T ss_pred             CEEEecCCchhHHHHHHHHHHHhhcCCCeEEEEEEEecCCCCCc--------c--hhHHHHHHHHHHHHHHHHHhh-hcC
Confidence            58899999999999999999999999999999999865331100        0  011111223334444322211 111


Q ss_pred             EEEEEEecCChHHHHHHHHhhh--cCccEEEEecCCCCCcccccCCcccCCCCccchhhhhhhcCCCCCceeEEEEe
Q 038269          700 VAYAEKHLANSSETFATLRSLE--GQYALIIVGRGERANSILTVGMNDWQQCPELGPIGDVLSGSDFLVRTSVLIIK  774 (792)
Q Consensus       700 v~y~e~~v~~~~e~~~~i~~~~--~~~dL~iVGr~~~~~s~~~~gl~~w~e~~eLG~iGd~las~d~~~~~SvLvvq  774 (792)
                      +.....+..++ +....|.++.  .+.||+++|+++..         .| ...-+|-.-+-+...   ++++||||+
T Consensus        70 ~~~~~~~~~~~-~~~~~I~~~a~~~~~dlIV~G~~~~~---------~~-~~~~lGs~~~~v~~~---~~~pvlvv~  132 (132)
T cd01988          70 VPVHTIIRIDH-DIASGILRTAKERQADLIIMGWHGST---------SL-RDRLFGGVIDQVLES---APCDVAVVK  132 (132)
T ss_pred             CceEEEEEecC-CHHHHHHHHHHhcCCCEEEEecCCCC---------Cc-cceecCchHHHHHhc---CCCCEEEeC
Confidence            22222222222 2334444443  35999999998742         12 234467777777754   678999984

Na+/H+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na+ /H+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na+ for H+ in an electroneutral manner, and this activity is carried out by a family of Na+ /H+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity wit h other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the regio

>PRK15118 universal stress global response regulator UspA; Provisional

Probab=97.89  E-value=0.00015  Score=69.08  Aligned_cols=132  Identities=14%  Similarity=0.119  Sum_probs=78.3

Q ss_pred             eEEEEecCCCChhhHHHHHHHhcCCCCCCceEEEEEEeeecccchhhhhcccCccccccchhhhhhhhHHHHHHHHHhhh
Q 038269          446 QILLCLHGSQNITSTLNFLEISRGTANPGVAVYVTDMIELTDQIAATLVQNEGIDTVTVTDKAVMEMREEITTAVQSYVD  525 (792)
Q Consensus       446 rILvcv~~~~~~~~li~l~~~~~~~~~sp~~v~~lhLvel~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~  525 (792)
                      |||+++...++....++.+..++..  ....++++|+.+-.....+.... .     ...+ ...+..++..+.++.+.+
T Consensus         5 ~ILvavD~S~~s~~al~~a~~la~~--~~a~l~ll~v~~~~~~~~~~~~~-~-----~~~~-~~~~~~~~~~~~l~~~~~   75 (144)
T PRK15118          5 HILIAVDLSPESKVLVEKAVSMARP--YNAKVSLIHVDVNYSDLYTGLID-V-----NLGD-MQKRISEETHHALTELST   75 (144)
T ss_pred             EEEEEccCChhHHHHHHHHHHHHHh--hCCEEEEEEEccChhhhhhhhhh-c-----chHH-HHHHHHHHHHHHHHHHHH
Confidence            6999998777777877777777643  23578999984311110000000 0     0000 001112233344445443


Q ss_pred             ccCcceEEEEeEeecCCCChhHHHHHHHhhcCCcEEEecCCCCccCCCccccCCcchhHHHHHHhhhCCCceEE
Q 038269          526 ENGGGITLKRMLALSTFSGMPQDICILAEDLMVSLIILPFHKRQLEDGTLDEGHPGFRYVNRKLLRNATCSVGI  599 (792)
Q Consensus       526 ~~~~~v~v~~~t~vs~~~~m~~dI~~~a~e~~~~liilp~h~~~~~~g~~~~~~~~~~~~n~~vl~~apCsVgI  599 (792)
                      .  .++.+.......  .+.++.||+.|++.++|||++|-|++    + .    ..++++-.+|+++|||+|-|
T Consensus        76 ~--~~~~~~~~~~~~--G~p~~~I~~~a~~~~~DLIV~Gs~~~----~-~----~~lgSva~~v~~~a~~pVLv  136 (144)
T PRK15118         76 N--AGYPITETLSGS--GDLGQVLVDAIKKYDMDLVVCGHHQD----F-W----SKLMSSARQLINTVHVDMLI  136 (144)
T ss_pred             h--CCCCceEEEEEe--cCHHHHHHHHHHHhCCCEEEEeCccc----H-H----HHHHHHHHHHHhhCCCCEEE
Confidence            2  234443222223  57889999999999999999998832    1 1    12568889999999999754

>PRK15005 universal stress protein F; Provisional

Probab=97.88  E-value=0.00015  Score=68.98  Aligned_cols=137  Identities=15%  Similarity=0.131  Sum_probs=77.7

Q ss_pred             eEEEEecCCCC--hhhHHHHHHHhcCCCCCCceEEEEEEeeecccchhhhhcccCccccccchhhhhhhhHHHHHHHHHh
Q 038269          446 QILLCLHGSQN--ITSTLNFLEISRGTANPGVAVYVTDMIELTDQIAATLVQNEGIDTVTVTDKAVMEMREEITTAVQSY  523 (792)
Q Consensus       446 rILvcv~~~~~--~~~li~l~~~~~~~~~sp~~v~~lhLvel~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~  523 (792)
                      +||+++...++  ....++.+..++..  ....++++|+++.............  ......+....+..+++.+..+.+
T Consensus         4 ~ILv~~D~s~~~~~~~a~~~a~~la~~--~~~~l~ll~v~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~   79 (144)
T PRK15005          4 TILVPIDISDSELTQRVISHVEAEAKI--DDAEVHFLTVIPSLPYYASLGLAYS--AELPAMDDLKAEAKSQLEEIIKKF   79 (144)
T ss_pred             cEEEecCCCchhHHHHHHHHHHHHHhc--cCCeEEEEEEEccCccccccccccc--ccchHHHHHHHHHHHHHHHHHHHh
Confidence            69999976665  35677776666643  3457999999985321111000000  000000000011112222223333


Q ss_pred             hhccCcceEEEEeEeecCCCChhHHHHHHHhhcCCcEEEecCCCCccCCCccccCCcchhHHHHHHhhhCCCceEE
Q 038269          524 VDENGGGITLKRMLALSTFSGMPQDICILAEDLMVSLIILPFHKRQLEDGTLDEGHPGFRYVNRKLLRNATCSVGI  599 (792)
Q Consensus       524 ~~~~~~~v~v~~~t~vs~~~~m~~dI~~~a~e~~~~liilp~h~~~~~~g~~~~~~~~~~~~n~~vl~~apCsVgI  599 (792)
                      .   ..++.++....-   -+..+.|++.|++.++|+|++|-|+. ...      ...++++..+|++++||+|-|
T Consensus        80 ~---~~~~~~~~~v~~---G~p~~~I~~~a~~~~~DLIV~Gs~~~-~~~------~~llGS~a~~vl~~a~cpVlv  142 (144)
T PRK15005         80 K---LPTDRVHVHVEE---GSPKDRILELAKKIPADMIIIASHRP-DIT------TYLLGSNAAAVVRHAECSVLV  142 (144)
T ss_pred             C---CCCCceEEEEeC---CCHHHHHHHHHHHcCCCEEEEeCCCC-Cch------heeecchHHHHHHhCCCCEEE
Confidence            2   223455544432   56789999999999999999997732 221      234677789999999999854

>cd00293 USP_Like Usp: Universal stress protein family

Probab=97.85  E-value=0.00022  Score=65.61  Aligned_cols=129  Identities=19%  Similarity=0.275  Sum_probs=85.1

Q ss_pred             eEEEEecCCCChhhHHHHHHHhcCCCCCCceEEEEEEeeecccchhhhhcccCccccccchhhhhhhhHHHHHHHHHhhh
Q 038269          446 QILLCLHGSQNITSTLNFLEISRGTANPGVAVYVTDMIELTDQIAATLVQNEGIDTVTVTDKAVMEMREEITTAVQSYVD  525 (792)
Q Consensus       446 rILvcv~~~~~~~~li~l~~~~~~~~~sp~~v~~lhLvel~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~  525 (792)
                      ++|+|+.+.+....+++.+..++..  ....++++|+.+-.+....     +      ..+ ......++.++.+.....
T Consensus         1 ~ilv~i~~~~~~~~~l~~a~~~a~~--~~~~i~~l~v~~~~~~~~~-----~------~~~-~~~~~~~~~l~~~~~~~~   66 (130)
T cd00293           1 RILVAVDGSEESERALRWAARLARR--LGAELVLLHVVDPPPSSAA-----E------LAE-LLEEEARALLEALREALA   66 (130)
T ss_pred             CEEEEeCCCHHHHHHHHHHHHHHHh--cCCEEEEEEEecCCCCcch-----h------HHH-HHHHHHHHHHHHHHHHHh
Confidence            5899998888999999999998866  3578999999765443221     0      000 001122333333333322


Q ss_pred             ccCcceEEEEeEeecCCCChhHHHHHHHhhcCCcEEEecCCCCccCCCccccCCcchhHHHHHHhhhCCCceEE
Q 038269          526 ENGGGITLKRMLALSTFSGMPQDICILAEDLMVSLIILPFHKRQLEDGTLDEGHPGFRYVNRKLLRNATCSVGI  599 (792)
Q Consensus       526 ~~~~~v~v~~~t~vs~~~~m~~dI~~~a~e~~~~liilp~h~~~~~~g~~~~~~~~~~~~n~~vl~~apCsVgI  599 (792)
                        ..+++++......  . ..++|++.+++.++|++++|++++....+      ..+++.-+++++++||+|-+
T Consensus        67 --~~~~~~~~~~~~~--~-~~~~i~~~~~~~~~dlvvig~~~~~~~~~------~~~~~~~~~ll~~~~~pvli  129 (130)
T cd00293          67 --EAGVKVETVVLEG--D-PAEAILEAAEELGADLIVMGSRGRSGLRR------LLLGSVAERVLRHAPCPVLV  129 (130)
T ss_pred             --cCCCceEEEEecC--C-CHHHHHHHHHHcCCCEEEEcCCCCCccce------eeeccHHHHHHhCCCCCEEe
Confidence              2347776665544  2 38999999999999999999986543211      23566678999999999743

The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity.

>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species

Probab=97.68  E-value=0.026  Score=62.61  Aligned_cols=295  Identities=16%  Similarity=0.147  Sum_probs=150.1

Q ss_pred             CCChhHHHHHHHhhccCccccccccccccHHHHHHHHHHHHHHHHHHHhhccChhhhhcCCcccchHhHHHHHHHHHHHH
Q 038269           52 HQPRITSDIVIGLFLGNIQPIRNGFELEMIQTLNYIVEFGMICYMFVLGLEMDPYVIFKPPTRDAIVAYGGMLSTFILGC  131 (792)
Q Consensus        52 ~~P~iv~~IlaGillGp~~~~~~lf~~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~l~p~~~~~  131 (792)
                      .+|+++--++.|+++.+.+..+   ++...+..+.+.+..+-+-+++.=++.|+++++|.++|.+..=..+ .+..++|.
T Consensus        24 ~l~~~vl~~~~~~~lsnlgli~---~p~~s~~y~~v~~~~vPlai~LlLl~~Dlr~i~~~g~~~l~~F~~~-~~g~viG~   99 (378)
T PF05684_consen   24 YLPGAVLCYLLGMLLSNLGLID---SPASSPVYDFVWTYLVPLAIPLLLLSADLRRILRLGGRLLLAFLIG-AVGTVIGA   99 (378)
T ss_pred             hcCHHHHHHHHHHHHHHCCCcC---CCCcchHHHHHHHHHHHHHHHHHHHHccHHHHHHhhHHHHHHHHHH-HHHHHHHH
Confidence            4888898999999999877431   1244567777777777777777778999999999998875333333 23334454


Q ss_pred             HHHHH-hhcc-cchhHHH-HHHHHHHHhh-ccHHHHHHHHHhcCCCCCchhHHHHHHHHHHH-HHHHHHHHHHHHHhcCC
Q 038269          132 SLTPF-LHYS-THRKIVV-AITLSFTLAG-SGSHILTRVITNLKIGKSDIGKLGMAAGIHSD-MITMLIICIGAVFVLPQ  206 (792)
Q Consensus       132 ~~~~~-l~~~-~~~~~~~-al~lg~~ls~-Ts~~vv~~iL~el~ll~s~~g~l~l~~a~i~D-i~~~~ll~i~~~~~~~~  206 (792)
                      .+++. ++.. ..+.|.. +.+.|.-..- ..+..+...   ++.   +  .-..+.++.-| +..-+.+.+...+....
T Consensus       100 ~va~~l~~~~l~~~~wk~ag~l~gsyiGGs~N~~Av~~a---l~~---~--~~~~~a~~aaDnv~~~~~~~~l~~l~~~~  171 (378)
T PF05684_consen  100 VVAFLLFGGFLGPEGWKIAGMLAGSYIGGSVNFVAVAEA---LGV---S--DSLFAAALAADNVVMALWFAFLLALPPFA  171 (378)
T ss_pred             HHHHHHHhhcccchHHHHHHHHHhcccCchhHHHHHHHH---HCC---C--HHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            44433 3221 1112211 1111111111 112222222   232   1  23444444444 44433333333332200


Q ss_pred             CCCchhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHh--------------hh--cCCCCcccchhHHHHHHHHHHHHHH
Q 038269          207 GNNTQEQIQSAIKMSASLIFQSVFAAKVSPVFMNWIN--------------NE--NPEGKAMKGTHLVLSLAFMVAVCSC  270 (792)
Q Consensus       207 ~~~~~~~~~~~l~~~~~~i~~~~~~~~v~r~~~~~i~--------------~~--~~~~~~~~e~~~~~il~~~l~~~~~  270 (792)
                                                   +..-+|..              +.  .++.++.. ..+...+.+.+..+.+
T Consensus       172 -----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~la~a~~v~~~  221 (378)
T PF05684_consen  172 -----------------------------RKFDRWTKADTSSIEALEEEIEAEEAEWARKPIS-QDLAFLLAVAFAVVAL  221 (378)
T ss_pred             -----------------------------HHhhhccCCCccccchhhhhhhhhhhccccCCcH-hHHHHHHHHHHHHHHH
Confidence                                         00000000              00  00001111 1123333333333332


Q ss_pred             ----hhhh-----Cch----hhHHHHHHhhhcCCCCcchHHHHHHHhHHHHhhhhHHHHHhhcccccccccccccchhHH
Q 038269          271 ----SPFY-----GYS----PILSAFMAGIFFPSEGRMSKWTVGKVNYLLSTLYYPIFFFWMGFHAKLFTFEADTLGTWG  337 (792)
Q Consensus       271 ----ae~~-----G~~----~~lgafvaGl~l~~~~~~~~~l~~kl~~~~~~~~~PlfF~~~Gl~~d~~~l~~~~~~~~~  337 (792)
                          ++.+     +.+    .++-....|++..- +|..+.+ .--+.+ ..+++=+||..+|++.|+..+. +   . .
T Consensus       222 s~~la~~l~~~~~~~~~~~~~il~~tt~~l~~~~-~~~~~~l-~g~~~l-g~~lly~ffa~IGa~a~i~~l~-~---a-p  293 (378)
T PF05684_consen  222 SHALAAWLPPLFAGISSSTWLILTVTTLGLATSF-PPFRKLL-RGASEL-GTFLLYLFFAVIGASADISELL-D---A-P  293 (378)
T ss_pred             HHHHHHHHHHHHhhccccHHHHHHHHHHHHHHhc-cchhhcC-CchHHH-HHHHHHHHHHHHccccCHHHHH-H---h-H
Confidence                2222     111    22333445555543 4544443 333444 6778888999999999987663 1   1 2


Q ss_pred             HHHHHHHHHHhhhHHHHHHHHHhhCCChHHHHHHHHHhhhhhHHHHHHHHHhhcccccCh
Q 038269          338 RFFFLIVISTAGKVVGTVICGLMLGFHWPESVSLGLLLSAKGHFYIFLAIMGAVHNYITH  397 (792)
Q Consensus       338 ~~~~li~~~~~~K~l~~~l~~~~~~~~~re~~~lg~~l~~kG~v~l~l~~~~~~~~~i~~  397 (792)
                      ..+++.++.+..-.+..+..++++|++..+...-+ .-|.-|..+......+++..+..+
T Consensus       294 ~~~l~~~i~l~iH~~l~l~~~kl~k~~l~~~~vAS-~AnIGGpaTA~a~A~a~~~~Lv~p  352 (378)
T PF05684_consen  294 SLFLFGFIILAIHLLLMLILGKLFKIDLFELLVAS-NANIGGPATAPAVAAAKGPSLVPP  352 (378)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHh-hcccCCcchHHHHHHhcCCccHHH
Confidence            23334455566788888889999999997765544 467777777666665555444433

>PRK09982 universal stress protein UspD; Provisional

Probab=97.68  E-value=0.00043  Score=65.98  Aligned_cols=132  Identities=8%  Similarity=0.062  Sum_probs=76.6

Q ss_pred             eEEEEecCCCChhhHHHHHHHhcCCCCCCceEEEEEEeeecccchhhhhcccCccccccchhhhhhhhHHHHHHHHHhhh
Q 038269          446 QILLCLHGSQNITSTLNFLEISRGTANPGVAVYVTDMIELTDQIAATLVQNEGIDTVTVTDKAVMEMREEITTAVQSYVD  525 (792)
Q Consensus       446 rILvcv~~~~~~~~li~l~~~~~~~~~sp~~v~~lhLvel~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~  525 (792)
                      +||+++...++....++-+..++..  .+.+++++|+++......+-.  ..    ....+ ......++..+.++.+.+
T Consensus         5 ~ILvavD~S~~s~~al~~A~~lA~~--~~a~l~llhV~~~~~~~~~~~--~~----~~~~~-~~~~~~~~~~~~l~~~~~   75 (142)
T PRK09982          5 HIGVAISGNEEDALLVNKALELARH--NDAHLTLIHIDDGLSELYPGI--YF----PATED-ILQLLKNKSDNKLYKLTK   75 (142)
T ss_pred             EEEEEecCCcchHHHHHHHHHHHHH--hCCeEEEEEEccCcchhchhh--hc----cchHH-HHHHHHHHHHHHHHHHHH
Confidence            6999998888888888877777744  456899999987432111000  00    00000 000111222222333332


Q ss_pred             ccCcceEEEEeEeecCCCChhHHHHHHHhhcCCcEEEecCCCCccCCCccccCCcchhHHHHHHhhhCCCceEE
Q 038269          526 ENGGGITLKRMLALSTFSGMPQDICILAEDLMVSLIILPFHKRQLEDGTLDEGHPGFRYVNRKLLRNATCSVGI  599 (792)
Q Consensus       526 ~~~~~v~v~~~t~vs~~~~m~~dI~~~a~e~~~~liilp~h~~~~~~g~~~~~~~~~~~~n~~vl~~apCsVgI  599 (792)
                      ... ...++..+..   -+..+.||+.|++.++|||+||-| +... +      +.+ .+-++|+++++|+|-|
T Consensus        76 ~~~-~~~~~~~v~~---G~p~~~I~~~A~~~~aDLIVmG~~-~~~~-~------~~~-~va~~V~~~s~~pVLv  136 (142)
T PRK09982         76 NIQ-WPKTKLRIER---GEMPETLLEIMQKEQCDLLVCGHH-HSFI-N------RLM-PAYRGMINKMSADLLI  136 (142)
T ss_pred             hcC-CCcceEEEEe---cCHHHHHHHHHHHcCCCEEEEeCC-hhHH-H------HHH-HHHHHHHhcCCCCEEE
Confidence            211 1223332322   578999999999999999999954 2111 1      123 3788999999999754

>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents

Probab=97.67  E-value=0.00055  Score=63.61  Aligned_cols=132  Identities=19%  Similarity=0.282  Sum_probs=77.7

Q ss_pred             eeEEEEeccCcChHHHHHHHHHHhcCCCeEEEEEEeeecCCCCcccccccccCCcchhhhhhhhhHHHHH-----HHHHh
Q 038269          619 LNVAVIFIGGKDDREALAYASRVARHPAVKLTVIRFLLDNSENPQRRAATYKDNTAELEEEMKIDDECFA-----EFYER  693 (792)
Q Consensus       619 ~~v~v~f~GG~ddreAL~~a~rma~~~~v~ltv~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~-----e~~~~  693 (792)
                      +||++++-|+++.++|+++|.+++++.+.+++++++.+.........       ....+.+...++....     +....
T Consensus         3 ~~Ilv~~d~~~~~~~al~~a~~la~~~~~~i~~l~v~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~   75 (140)
T PF00582_consen    3 KRILVAIDGSEESRRALRFALELAKRSGAEITLLHVIPPPPQYSFSA-------AEDEESEEEAEEEEQARQAEAEEAEA   75 (140)
T ss_dssp             SEEEEEESSSHHHHHHHHHHHHHHHHHTCEEEEEEEEESCHCHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEEECCCHHHHHHHHHHHHHHHhhCCeEEEEEeecccccccccc-------ccccccccccchhhhhhhHHHHHHhh
Confidence            58999999999999999999999999999999999987543211000       0000000000000000     01011


Q ss_pred             hcCCCcEEEEEEecCChHHHHHHHHhhhcCccEEEEecCCCCCcccccCCcccCCCCccchhhhhhhcCCCCCceeEEEE
Q 038269          694 QVAEGHVAYAEKHLANSSETFATLRSLEGQYALIIVGRGERANSILTVGMNDWQQCPELGPIGDVLSGSDFLVRTSVLII  773 (792)
Q Consensus       694 ~~~~~~v~y~e~~v~~~~e~~~~i~~~~~~~dL~iVGr~~~~~s~~~~gl~~w~e~~eLG~iGd~las~d~~~~~SvLvv  773 (792)
                        ......+......+..+.+....+ ..++|++|+|+++..         .|.+ --+|-+-+-++..   +.++||||
T Consensus        76 --~~~~~~~~~~~~~~~~~~i~~~~~-~~~~dliv~G~~~~~---------~~~~-~~~gs~~~~l~~~---~~~pVlvv  139 (140)
T PF00582_consen   76 --EGGIVIEVVIESGDVADAIIEFAE-EHNADLIVMGSRGRS---------GLER-LLFGSVAEKLLRH---APCPVLVV  139 (140)
T ss_dssp             --HTTSEEEEEEEESSHHHHHHHHHH-HTTCSEEEEESSSTT---------STTT-SSSHHHHHHHHHH---TSSEEEEE
T ss_pred             --hccceeEEEEEeeccchhhhhccc-cccceeEEEeccCCC---------CccC-CCcCCHHHHHHHc---CCCCEEEe
Confidence              122334444444444443333322 346999999998732         2222 2278888888874   66799987

UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [] reveals an alpha/beta fold similar to that of the Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0577 protein, which binds ATP [], though UspA lacks ATP-binding activity.; GO: 0006950 response to stress; PDB: 3DLO_C 3QTB_A 2PFS_A 3TNJ_A 1JMV_D 3FH0_B 3FDX_B 3AB7_A 3AB8_A 2GM3_F ....

>PRK11175 universal stress protein UspE; Provisional

Probab=97.66  E-value=0.00037  Score=75.40  Aligned_cols=144  Identities=14%  Similarity=0.049  Sum_probs=83.0

Q ss_pred             ceEEEEecCCCCh-------hhHHHHHHHhcCCCCCCceEEEEEEeeecccchhhhhcccCccccccchhhhhhhhHHHH
Q 038269          445 LQILLCLHGSQNI-------TSTLNFLEISRGTANPGVAVYVTDMIELTDQIAATLVQNEGIDTVTVTDKAVMEMREEIT  517 (792)
Q Consensus       445 lrILvcv~~~~~~-------~~li~l~~~~~~~~~sp~~v~~lhLvel~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  517 (792)
                      -+||+++...+..       ...++.+..++... ....++++|+.+..........+.    . ...+ ......++..
T Consensus       153 ~~Ilva~D~s~~~~~~~~~~~~al~~a~~la~~~-~~a~l~ll~v~~~~~~~~~~~~~~----~-~~~~-~~~~~~~~~~  225 (305)
T PRK11175        153 GKILVAVNVASEEPYHDALNEKLVEEAIDLAEQL-NHAEVHLVNAYPVTPINIAIELPE----F-DPSV-YNDAIRGQHL  225 (305)
T ss_pred             CeEEEEeCCCCCccchhHHHHHHHHHHHHHHhhC-cCCceEEEEEecCcchhccccccc----c-chhh-HHHHHHHHHH
Confidence            4799999644332       35677777766442 135789999987543211000000    0 0000 0011122233


Q ss_pred             HHHHHhhhccCcceEEEEeEeecCCCChhHHHHHHHhhcCCcEEEecCCCCccCCCccccCCcchhHHHHHHhhhCCCce
Q 038269          518 TAVQSYVDENGGGITLKRMLALSTFSGMPQDICILAEDLMVSLIILPFHKRQLEDGTLDEGHPGFRYVNRKLLRNATCSV  597 (792)
Q Consensus       518 ~af~~~~~~~~~~v~v~~~t~vs~~~~m~~dI~~~a~e~~~~liilp~h~~~~~~g~~~~~~~~~~~~n~~vl~~apCsV  597 (792)
                      +.++.+.+..  ++.........  .+..+.|++.|+++++|+|+||.|.+....+      ..++++.++|++++||+|
T Consensus       226 ~~l~~~~~~~--~~~~~~~~v~~--G~~~~~I~~~a~~~~~DLIVmG~~~~~~~~~------~llGS~a~~v~~~~~~pV  295 (305)
T PRK11175        226 LAMKALRQKF--GIDEEQTHVEE--GLPEEVIPDLAEHLDAELVILGTVGRTGLSA------AFLGNTAEHVIDHLNCDL  295 (305)
T ss_pred             HHHHHHHHHh--CCChhheeecc--CCHHHHHHHHHHHhCCCEEEECCCccCCCcc------eeecchHHHHHhcCCCCE
Confidence            3444444322  23322222233  5678999999999999999999996654432      346777899999999998


Q ss_pred             EEEecCCC
Q 038269          598 GILVDRGF  605 (792)
Q Consensus       598 gIlVdrg~  605 (792)
                      -++-.+|+
T Consensus       296 Lvv~~~~~  303 (305)
T PRK11175        296 LAIKPDGY  303 (305)
T ss_pred             EEEcCCCC
Confidence            66545554

>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases

Probab=97.59  E-value=0.00081  Score=64.12  Aligned_cols=140  Identities=12%  Similarity=0.106  Sum_probs=80.0

Q ss_pred             eEEEEeccCcChHHHHHHHHHHhcCCCeEEEEEEeeecCCCCcccccccccCCcchhhhhhhhhHHHHHHHHHhhcCCCc
Q 038269          620 NVAVIFIGGKDDREALAYASRVARHPAVKLTVIRFLLDNSENPQRRAATYKDNTAELEEEMKIDDECFAEFYERQVAEGH  699 (792)
Q Consensus       620 ~v~v~f~GG~ddreAL~~a~rma~~~~v~ltv~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~e~~~~~~~~~~  699 (792)
                      .|++++=|.+..+.|+++|.++++.++.+++++|+++........ ...........++.++.-++.++++.+.. ....
T Consensus         1 ~ILVavD~S~~s~~al~~a~~~a~~~~~~l~ll~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~   78 (146)
T cd01989           1 SVAVAVDKDKKSKNALKWALDNLATKGQTIVLVHVHPPITSIPSS-SGKLEVASAYKQEEDKEAKELLLPYRCFC-SRKG   78 (146)
T ss_pred             CEEEEecCccccHHHHHHHHHhccCCCCcEEEEEeccCcccCCCC-ccchHHHHHHHHHHHHHHHHHHHHHHHHH-hhcC
Confidence            378899999999999999999999999999999998643211000 00000000001111222345666664332 1223


Q ss_pred             EEEEEEecCChHHHHHHHHhhhc--CccEEEEecCCCCCcccccCCcccCCCCccc-hhhhhhhcCCCCCc--eeEEEEe
Q 038269          700 VAYAEKHLANSSETFATLRSLEG--QYALIIVGRGERANSILTVGMNDWQQCPELG-PIGDVLSGSDFLVR--TSVLIIK  774 (792)
Q Consensus       700 v~y~e~~v~~~~e~~~~i~~~~~--~~dL~iVGr~~~~~s~~~~gl~~w~e~~eLG-~iGd~las~d~~~~--~SvLvvq  774 (792)
                      +.+...++. +.+..+.|.+.++  +.||+|+|+++..      |+..   . -+| -+-+.+.-.   .+  ++|||||
T Consensus        79 ~~~~~~~~~-g~~~~~~I~~~a~~~~~dlIV~Gs~g~~------~l~~---~-~~gssva~~Vi~~---a~~~c~Vlvv~  144 (146)
T cd01989          79 VQCEDVVLE-DDDVAKAIVEYVADHGITKLVMGASSDN------HFSM---K-FKKSDVASSVLKE---APDFCTVYVVS  144 (146)
T ss_pred             CeEEEEEEe-CCcHHHHHHHHHHHcCCCEEEEeccCCC------ceee---c-ccCCchhHHHHhc---CCCCceEEEEe
Confidence            455544443 2223333434333  4799999997641      2221   1 245 577877764   44  7999998


Q ss_pred             e
Q 038269          775 Q  775 (792)
Q Consensus       775 q  775 (792)
                      -
T Consensus       145 ~  145 (146)
T cd01989         145 K  145 (146)
T ss_pred             C
Confidence            3

The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. The N-terminal domain is homologous to the USP family which has a ATP binding fold. The N-terminal domain is predicted to be involved in ATP binding.

>PRK10116 universal stress protein UspC; Provisional

Probab=97.56  E-value=0.0011  Score=62.76  Aligned_cols=133  Identities=9%  Similarity=0.150  Sum_probs=80.1

Q ss_pred             eEEEEecCCCChhhHHHHHHHhcCCCCCCceEEEEEEeeecccchhhhhcccCccccccchhhhhhhhHHHHHHHHHhhh
Q 038269          446 QILLCLHGSQNITSTLNFLEISRGTANPGVAVYVTDMIELTDQIAATLVQNEGIDTVTVTDKAVMEMREEITTAVQSYVD  525 (792)
Q Consensus       446 rILvcv~~~~~~~~li~l~~~~~~~~~sp~~v~~lhLvel~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~  525 (792)
                      +||+++...++....+..+..++...  ...++++|.++...-... . ...     ...+ ......++..+.++.+.+
T Consensus         5 ~ILv~~D~s~~s~~al~~A~~lA~~~--~a~l~ll~v~~~~~~~~~-~-~~~-----~~~~-~~~~~~~~~~~~l~~~~~   74 (142)
T PRK10116          5 NILVAVAVTPESQQLLAKAVSIARPV--NGKISLITLASDPEMYNQ-F-AAP-----MLED-LRSVMQEETQSFLDKLIQ   74 (142)
T ss_pred             eEEEEccCCcchHHHHHHHHHHHHHh--CCEEEEEEEccCcccchh-h-hHH-----HHHH-HHHHHHHHHHHHHHHHHH
Confidence            79999987777788888888777542  357888999865321000 0 000     0000 001112233344555444


Q ss_pred             ccCcceEEEEeEeecCCCChhHHHHHHHhhcCCcEEEecCCCCccCCCccccCCcchhHHHHHHhhhCCCceEEE
Q 038269          526 ENGGGITLKRMLALSTFSGMPQDICILAEDLMVSLIILPFHKRQLEDGTLDEGHPGFRYVNRKLLRNATCSVGIL  600 (792)
Q Consensus       526 ~~~~~v~v~~~t~vs~~~~m~~dI~~~a~e~~~~liilp~h~~~~~~g~~~~~~~~~~~~n~~vl~~apCsVgIl  600 (792)
                      .  .++.......  ...+..+.|++.|++.++||||+|=|++....        .+.++-.++++++||+|-|+
T Consensus        75 ~--~~~~~~~~~~--~~G~~~~~I~~~a~~~~~DLiV~g~~~~~~~~--------~~~s~a~~v~~~~~~pVLvv  137 (142)
T PRK10116         75 D--ADYPIEKTFI--AYGELSEHILEVCRKHHFDLVICGNHNHSFFS--------RASCSAKRVIASSEVDVLLV  137 (142)
T ss_pred             h--cCCCeEEEEE--ecCCHHHHHHHHHHHhCCCEEEEcCCcchHHH--------HHHHHHHHHHhcCCCCEEEE
Confidence            2  2344332222  34788999999999999999999988553221        11245679999999998654

>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi

Probab=97.44  E-value=0.011  Score=62.48  Aligned_cols=258  Identities=11%  Similarity=0.068  Sum_probs=141.1

Q ss_pred             HHHHHHHHhhccChhhhhcCCcccchHhHHHHHHHHHHHHHHHHHhhcccc----hhHHHHHHHHHHHhhccHHHHHHHH
Q 038269           92 MICYMFVLGLEMDPYVIFKPPTRDAIVAYGGMLSTFILGCSLTPFLHYSTH----RKIVVAITLSFTLAGSGSHILTRVI  167 (792)
Q Consensus        92 l~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~l~p~~~~~~~~~~l~~~~~----~~~~~al~lg~~ls~Ts~~vv~~iL  167 (792)
                      +..++|-.|-++|++...+..||...+-+.-+++..+++.++..+++....    ......+.+-++++.+....=..+.
T Consensus        51 ig~~l~~~Ga~I~~k~~~~~lkkg~~ll~~K~~~~~~lgl~~~~~fg~~Gi~~g~f~GlS~LAiiaa~~~~NggLY~aL~  130 (314)
T PF03812_consen   51 IGVFLFCMGAQIDLKSAGKVLKKGGVLLLVKFIIGALLGLLVGKFFGPEGIQSGFFLGLSALAIIAAMTNSNGGLYLALM  130 (314)
T ss_pred             HHHHHHHhccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHHHHcCccccccccccchHHHHHHHHHhcCCHHHHHHHH
Confidence            346788999999999999999998888888899999999999888864211    1112245566677777766677777


Q ss_pred             HhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhcC
Q 038269          168 TNLKIGKSDIGKLGMAAGIHSDMITMLIICIGAVFVLPQGNNTQEQIQSAIKMSASLIFQSVFAAKVSPVFMNWINNENP  247 (792)
Q Consensus       168 ~el~ll~s~~g~l~l~~a~i~Di~~~~ll~i~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~v~r~~~~~i~~~~~  247 (792)
                      .|++ -++|.|-..  ..-++|.=.+.+++                             +..-+.               
T Consensus       131 ~~yG-d~~D~gA~~--i~sl~~GPf~tMl~-----------------------------LG~sG~---------------  163 (314)
T PF03812_consen  131 GQYG-DEEDVGAFS--ILSLNDGPFFTMLA-----------------------------LGASGL---------------  163 (314)
T ss_pred             HHhC-CHHHhHHHH--HHHhhhhHHHHHHH-----------------------------Hhhccc---------------
Confidence            7777 344443221  11122221111111                             110000               


Q ss_pred             CCCcccchhHHHHHHHHHHHHHHhhhhCchhhHHHHHHhhhcCCCCcchHHHHHHHhHHHHhhhhHHHHHhhcccccccc
Q 038269          248 EGKAMKGTHLVLSLAFMVAVCSCSPFYGYSPILSAFMAGIFFPSEGRMSKWTVGKVNYLLSTLYYPIFFFWMGFHAKLFT  327 (792)
Q Consensus       248 ~~~~~~e~~~~~il~~~l~~~~~ae~~G~~~~lgafvaGl~l~~~~~~~~~l~~kl~~~~~~~~~PlfF~~~Gl~~d~~~  327 (792)
                           .+..+... .               +.+=+++.|+++.|-   .+++.+.+.+- ..+++|+|-...|..+|+..
T Consensus       164 -----a~ip~~~l-v---------------~~llP~iiG~iLGNL---D~~~r~fl~~~-~~~lIPF~~f~lGa~inl~~  218 (314)
T PF03812_consen  164 -----ANIPWMSL-V---------------AALLPIIIGMILGNL---DPDFRKFLAPG-VPILIPFFGFALGAGINLSN  218 (314)
T ss_pred             -----cCCCHHHH-H---------------HHHHHHHHHHHHhcC---CHHHHHHHhcC-CCeeeehhhhhhcCCCCHHH
Confidence                 00000000 0               123377888888874   44556666653 78899999999999999876


Q ss_pred             cccccchhHHHHHHHHHHHHhhhHHHHHHHHHh-hCCChHHHHHHHHHhhhhhHHHHHHHHHhhcccccChhhHHHHHHH
Q 038269          328 FEADTLGTWGRFFFLIVISTAGKVVGTVICGLM-LGFHWPESVSLGLLLSAKGHFYIFLAIMGAVHNYITHTTAASLVIM  406 (792)
Q Consensus       328 l~~~~~~~~~~~~~li~~~~~~K~l~~~l~~~~-~~~~~re~~~lg~~l~~kG~v~l~l~~~~~~~~~i~~~~~~~lv~~  406 (792)
                      +...+  .-+.++.++  .++.--...++.-++ .|-+-.-+...+-.-+.--....+++..-.+.....+..-..+..+
T Consensus       219 i~~aG--l~GIlLgv~--~~~vtg~~~~~~dr~i~~~~g~aG~A~sstAGnavatPaaiA~~dP~~~~~~~~ATaQvAaa  294 (314)
T PF03812_consen  219 IIKAG--LSGILLGVI--VVVVTGIPLYLADRLILKGNGVAGAAISSTAGNAVATPAAIAAADPSFAPYAASATAQVAAA  294 (314)
T ss_pred             HHHhC--cchHHHHHH--HHHHHhHHHHHHHHHHcCCCCceeehHHhhhhhhhhhhHHHHHhChhhHhhHHHHHHHHHHH
Confidence            53221  112111111  111112223444444 2333222222222111112223333333333333333444455677


Q ss_pred             HHHHHhhhhHHHHHhhhhh
Q 038269          407 IFFTIVHTPFVVQNIIGRA  425 (792)
Q Consensus       407 ~vl~~~~~~~li~~l~~~~  425 (792)
                      +++|++++|.+++|.+|+-
T Consensus       295 vIvTail~P~lt~~~~kr~  313 (314)
T PF03812_consen  295 VIVTAILTPILTSWWAKRF  313 (314)
T ss_pred             HHHHHHHHHHHHHHHHHhc
Confidence            8888999999999988753

There are homologs of this protein found in both Gram-positive and Gram-negative bacteria. In E. chrysanthemi, a phytopathogenic bacterium, degraded pectin products from plant cell walls are transported by 2-keto-3-deoxygluconate permease into the bacterial cell to provide a carbon and energy source []. 2-keto-3-deoxygluconate permease can mediate the uptake of glucuronate with a low affinity [].; GO: 0015649 2-keto-3-deoxygluconate:hydrogen symporter activity, 0008643 carbohydrate transport, 0046411 2-keto-3-deoxygluconate transport, 0016021 integral to membrane

>TIGR00698 conserved hypothetical integral membrane protein

Probab=97.41  E-value=0.11  Score=56.50  Aligned_cols=110  Identities=15%  Similarity=0.136  Sum_probs=69.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHH-hHcccCCChhHHHHHHHhhccCccc--cccccccccHHHHHHHHHHHHHHHHHHHhhcc
Q 038269           27 GSGKIVGLLLAYVLTNLAHH-LLKPMHQPRITSDIVIGLFLGNIQP--IRNGFELEMIQTLNYIVEFGMICYMFVLGLEM  103 (792)
Q Consensus        27 lp~~l~~i~lil~~~~~~~~-l~~rl~~P~iv~~IlaGillGp~~~--~~~lf~~~~~~~l~~l~~lgl~~llF~~Gle~  103 (792)
                      +|-+.+...+.++...+... ..++.+++.++--++.|+++|+...  ....+.+...-.-+.+-.+|+++    .|.++
T Consensus         4 ~pG~~l~~~ia~~a~~l~~~~~~~~~~l~~~~~AillG~~l~n~~~~~~~~~~~~Gi~f~~k~lLr~gIVL----lG~~l   79 (335)
T TIGR00698         4 SRGLLQMALILLLAGAAGSIINLADPALSALFLAILLGMVAGNTIYPQRDEEKKRGVLFAKPFLLRIGITL----YGFRL   79 (335)
T ss_pred             hhHHHHHHHHHHHHHHHHhhhhhccCCCcHHHHHHHHHHHHhccccccchhhccchHHHHHHHHHHHHHHH----HCccc
Confidence            45555554444433333332 1355789999999999999998431  11111101112334666777664    69999


Q ss_pred             ChhhhhcCCcccchHhHHHHHHHHHHHHHHH-HHhhcc
Q 038269          104 DPYVIFKPPTRDAIVAYGGMLSTFILGCSLT-PFLHYS  140 (792)
Q Consensus       104 d~~~l~~~~~~~~~ia~~~~l~p~~~~~~~~-~~l~~~  140 (792)
                      +++++.+.+.+.+.+....+..++.++..+. ..++.+
T Consensus        80 ~~~~i~~~G~~~l~~~~~~v~~~~~~~~~~g~k~l~l~  117 (335)
T TIGR00698        80 TFPYIADVGPNEIVADTLILTSTFFLTVFLGSSRLKLD  117 (335)
T ss_pred             cHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            9999999999888777777777777766666 466643

Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa.

>COG0385 Predicted Na+-dependent transporter [General function prediction only]

Probab=97.36  E-value=0.076  Score=56.79  Aligned_cols=149  Identities=9%  Similarity=0.075  Sum_probs=80.6

Q ss_pred             HHHHHHHHHHHHHHHHHHhhccChhhhhcCCc---ccchHhHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHhh-
Q 038269           82 QTLNYIVEFGMICYMFVLGLEMDPYVIFKPPT---RDAIVAYGGMLSTFILGCSLTPFLHYSTHRKIVVAITLSFTLAG-  157 (792)
Q Consensus        82 ~~l~~l~~lgl~~llF~~Gle~d~~~l~~~~~---~~~~ia~~~~l~p~~~~~~~~~~l~~~~~~~~~~al~lg~~ls~-  157 (792)
                      ..++..-.+.+.++||..|+.+..+++++..|   ........++++--.+++++...+..++      .+..|..+-. 
T Consensus        34 ~~~~~~~~~~l~lImf~mGl~Ls~~d~~~~~~~p~~vligl~~qfvlmPlla~~~~~~~~l~~------~l~~Gl~ll~~  107 (319)
T COG0385          34 GWLGSAIPIALALIMFGMGLTLSREDFLAGLKHPRLVLIGLAAQFVLMPLLALLLAKLFPLPP------ELAVGLLLLGC  107 (319)
T ss_pred             hhhhHHHHHHHHHHHHhcCCCCCHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHcCCCH------HHHHhHHheee
Confidence            34444557888899999999999999986544   4444444555554445666666664322      2334444432 


Q ss_pred             ----ccHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHHHHHHHHH
Q 038269          158 ----SGSHILTRVITNLKIGKSDIGKLGMAAGIHSDMITMLIICIGAVFVLPQGNNTQEQIQSAIKMSASLIFQSVFAAK  233 (792)
Q Consensus       158 ----Ts~~vv~~iL~el~ll~s~~g~l~l~~a~i~Di~~~~ll~i~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~  233 (792)
                          |+. .+...+..     .+ --++++.+.++.+++.++.-+...+..++.. ... .+..++.++..++.=++.+.
T Consensus       108 ~Pggv~S-~~~t~lAk-----Gn-ValsV~~tsvStll~~f~tPllv~l~~~~~v-~~~-~~~m~~~i~~~vllP~~LG~  178 (319)
T COG0385         108 CPGGVAS-NAMTYLAK-----GN-VALSVCSTSVSTLLGPFLTPLLVGLLAGGGV-PVD-VGGMFLSILLQVLLPFVLGQ  178 (319)
T ss_pred             CCCchhH-HHHHHHhc-----Cc-HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CCc-hHHHHHHHHHHHHHHHHHHH
Confidence                332 33333332     22 2466667778888888776555444433211 101 12344444433333344555


Q ss_pred             HhHHHHHHHhhh
Q 038269          234 VSPVFMNWINNE  245 (792)
Q Consensus       234 v~r~~~~~i~~~  245 (792)
                      +.|+......++
T Consensus       179 ~~r~~~~~~~~~  190 (319)
T COG0385         179 LLRPLLPKWVER  190 (319)
T ss_pred             HHHHHHHHHHHH
Confidence            666665544443

>cd00293 USP_Like Usp: Universal stress protein family

Probab=97.22  E-value=0.0056  Score=56.03  Aligned_cols=128  Identities=19%  Similarity=0.230  Sum_probs=75.4

Q ss_pred             eEEEEeccCcChHHHHHHHHHHhcCCCeEEEEEEeeecCCCCcccccccccCCcchhhhhhhhhHHHHHHHHHhhcCCCc
Q 038269          620 NVAVIFIGGKDDREALAYASRVARHPAVKLTVIRFLLDNSENPQRRAATYKDNTAELEEEMKIDDECFAEFYERQVAEGH  699 (792)
Q Consensus       620 ~v~v~f~GG~ddreAL~~a~rma~~~~v~ltv~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~e~~~~~~~~~~  699 (792)
                      +|++++-+++..+.++.+|.+|++..+.++|++++.+..+...         . ..++.+....++.++++.... ....
T Consensus         1 ~ilv~i~~~~~~~~~l~~a~~~a~~~~~~i~~l~v~~~~~~~~---------~-~~~~~~~~~~~~~l~~~~~~~-~~~~   69 (130)
T cd00293           1 RILVAVDGSEESERALRWAARLARRLGAELVLLHVVDPPPSSA---------A-ELAELLEEEARALLEALREAL-AEAG   69 (130)
T ss_pred             CEEEEeCCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCCCCcc---------h-hHHHHHHHHHHHHHHHHHHHH-hcCC
Confidence            5788888899999999999999999999999999976433110         0 001112223456777775532 1122


Q ss_pred             EEEEEEecCChHHHHHHHHhh--hcCccEEEEecCCCCCcccccCCcccCCCCccchhhhhhhcCCCCCceeEEEE
Q 038269          700 VAYAEKHLANSSETFATLRSL--EGQYALIIVGRGERANSILTVGMNDWQQCPELGPIGDVLSGSDFLVRTSVLII  773 (792)
Q Consensus       700 v~y~e~~v~~~~e~~~~i~~~--~~~~dL~iVGr~~~~~s~~~~gl~~w~e~~eLG~iGd~las~d~~~~~SvLvv  773 (792)
                      +.+....+. +.. ...|.+.  ..++|++|+|.++..         .|.+ --.|.+.+-|...   ++..||+|
T Consensus        70 ~~~~~~~~~-~~~-~~~i~~~~~~~~~dlvvig~~~~~---------~~~~-~~~~~~~~~ll~~---~~~pvliv  130 (130)
T cd00293          70 VKVETVVLE-GDP-AEAILEAAEELGADLIVMGSRGRS---------GLRR-LLLGSVAERVLRH---APCPVLVV  130 (130)
T ss_pred             CceEEEEec-CCC-HHHHHHHHHHcCCCEEEEcCCCCC---------ccce-eeeccHHHHHHhC---CCCCEEeC
Confidence            333333322 222 2333332  234899999997642         2222 2357777777754   55566654

The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity.

>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family

Probab=97.19  E-value=0.0026  Score=58.76  Aligned_cols=121  Identities=18%  Similarity=0.224  Sum_probs=72.3

Q ss_pred             eEEEEeccCcChHHHHHHHHHHhcCCCeEEEEEEeeecCCCCcccccccccCCcchhhhhhhhhHHHHHHHHHhhcCCCc
Q 038269          620 NVAVIFIGGKDDREALAYASRVARHPAVKLTVIRFLLDNSENPQRRAATYKDNTAELEEEMKIDDECFAEFYERQVAEGH  699 (792)
Q Consensus       620 ~v~v~f~GG~ddreAL~~a~rma~~~~v~ltv~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~e~~~~~~~~~~  699 (792)
                      ||++++-|.+..++|+++|.+++++.+.+++++++.+.....            ..++     .++.++++++... ...
T Consensus         1 ~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~~~------------~~~~-----~~~~l~~~~~~~~-~~~   62 (124)
T cd01987           1 RILVCISGGPNAERLIRRAARLADRLKAPWYVVYVETPRLNR------------LSEA-----ERRRLAEALRLAE-ELG   62 (124)
T ss_pred             CEEEEECCCcchHHHHHHHHHHHHHhCCCEEEEEEecCcccc------------CCHH-----HHHHHHHHHHHHH-HcC
Confidence            588999999999999999999999999999999998643210            0011     1233333332211 112


Q ss_pred             EEEEEEecCChHHHHHHHHhh--hcCccEEEEecCCCCCcccccCCcccCCCCccchhhhhhhcCCCCCceeEEEE
Q 038269          700 VAYAEKHLANSSETFATLRSL--EGQYALIIVGRGERANSILTVGMNDWQQCPELGPIGDVLSGSDFLVRTSVLII  773 (792)
Q Consensus       700 v~y~e~~v~~~~e~~~~i~~~--~~~~dL~iVGr~~~~~s~~~~gl~~w~e~~eLG~iGd~las~d~~~~~SvLvv  773 (792)
                      +.+.  .+.+ .+..+.|.+.  ..+.|++++|.++..         .|... -+|-..+-+.-.-  .+..|||+
T Consensus        63 ~~~~--~~~~-~~~~~~I~~~~~~~~~dllviG~~~~~---------~~~~~-~~Gs~~~~v~~~a--~~~~v~v~  123 (124)
T cd01987          63 AEVV--TLPG-DDVAEAIVEFAREHNVTQIVVGKSRRS---------RWREL-FRGSLVDRLLRRA--GNIDVHIV  123 (124)
T ss_pred             CEEE--EEeC-CcHHHHHHHHHHHcCCCEEEeCCCCCc---------hHHHH-hcccHHHHHHHhC--CCCeEEEe
Confidence            3332  2222 2233444444  335899999998641         22221 3677777776541  36788876

The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.

>PRK15005 universal stress protein F; Provisional

Probab=97.17  E-value=0.0072  Score=57.29  Aligned_cols=137  Identities=9%  Similarity=0.095  Sum_probs=76.9

Q ss_pred             eeEEEEeccCcC--hHHHHHHHHHHhcCCCeEEEEEEeeecCCCCcccccccccCCcchhhhhhhhhHHHHHHHHHhhcC
Q 038269          619 LNVAVIFIGGKD--DREALAYASRVARHPAVKLTVIRFLLDNSENPQRRAATYKDNTAELEEEMKIDDECFAEFYERQVA  696 (792)
Q Consensus       619 ~~v~v~f~GG~d--dreAL~~a~rma~~~~v~ltv~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~e~~~~~~~  696 (792)
                      ++|+++.=|.++  .+.|+++|.++++..+.+++++|+++........ .........+.+..++.-++.++++.++.. 
T Consensus         3 ~~ILv~~D~s~~~~~~~a~~~a~~la~~~~~~l~ll~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-   80 (144)
T PRK15005          3 RTILVPIDISDSELTQRVISHVEAEAKIDDAEVHFLTVIPSLPYYASL-GLAYSAELPAMDDLKAEAKSQLEEIIKKFK-   80 (144)
T ss_pred             ccEEEecCCCchhHHHHHHHHHHHHHhccCCeEEEEEEEccCcccccc-cccccccchHHHHHHHHHHHHHHHHHHHhC-
Confidence            578899888776  4799999999999999999999998642211000 000000000011112222344555544322 


Q ss_pred             CCcEEEEEEecCChHHHHHHHHhh--hcCccEEEEecCCCCCcccccCCcccCCCCccchhhhhhhcCCCCCceeEEEE
Q 038269          697 EGHVAYAEKHLANSSETFATLRSL--EGQYALIIVGRGERANSILTVGMNDWQQCPELGPIGDVLSGSDFLVRTSVLII  773 (792)
Q Consensus       697 ~~~v~y~e~~v~~~~e~~~~i~~~--~~~~dL~iVGr~~~~~s~~~~gl~~w~e~~eLG~iGd~las~d~~~~~SvLvv  773 (792)
                      ...+.+... +..|. ....|.+.  +.++||+|+|++++       |+.+|    =+|-+.+-+...   ++++||||
T Consensus        81 ~~~~~~~~~-v~~G~-p~~~I~~~a~~~~~DLIV~Gs~~~-------~~~~~----llGS~a~~vl~~---a~cpVlvV  143 (144)
T PRK15005         81 LPTDRVHVH-VEEGS-PKDRILELAKKIPADMIIIASHRP-------DITTY----LLGSNAAAVVRH---AECSVLVV  143 (144)
T ss_pred             CCCCceEEE-EeCCC-HHHHHHHHHHHcCCCEEEEeCCCC-------Cchhe----eecchHHHHHHh---CCCCEEEe
Confidence            222333333 33443 23334444  33699999997631       23222    257777777765   67899997

>PRK10116 universal stress protein UspC; Provisional

Probab=97.16  E-value=0.003  Score=59.88  Aligned_cols=134  Identities=14%  Similarity=0.102  Sum_probs=73.1

Q ss_pred             eeEEEEeccCcChHHHHHHHHHHhcCCCeEEEEEEeeecCCCCcccccccccCCcchhhhhhhhhHHHHHHHHHhhcCCC
Q 038269          619 LNVAVIFIGGKDDREALAYASRVARHPAVKLTVIRFLLDNSENPQRRAATYKDNTAELEEEMKIDDECFAEFYERQVAEG  698 (792)
Q Consensus       619 ~~v~v~f~GG~ddreAL~~a~rma~~~~v~ltv~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~e~~~~~~~~~  698 (792)
                      ++|+++.=+..+.+.||++|.++|+..+.+++++++++.......  ..... .....+..++.-++.+++...+.    
T Consensus         4 ~~ILv~~D~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~l~~~~~~~----   76 (142)
T PRK10116          4 SNILVAVAVTPESQQLLAKAVSIARPVNGKISLITLASDPEMYNQ--FAAPM-LEDLRSVMQEETQSFLDKLIQDA----   76 (142)
T ss_pred             ceEEEEccCCcchHHHHHHHHHHHHHhCCEEEEEEEccCcccchh--hhHHH-HHHHHHHHHHHHHHHHHHHHHhc----
Confidence            589999999999999999999999999999999999754221000  00000 00000111111123444443221    


Q ss_pred             cEEEEEEecCChHHHHHHHHhh-hcCccEEEEecCCCCCcccccCCcccCCCCccchhhhhhhcCCCCCceeEEEEe
Q 038269          699 HVAYAEKHLANSSETFATLRSL-EGQYALIIVGRGERANSILTVGMNDWQQCPELGPIGDVLSGSDFLVRTSVLIIK  774 (792)
Q Consensus       699 ~v~y~e~~v~~~~e~~~~i~~~-~~~~dL~iVGr~~~~~s~~~~gl~~w~e~~eLG~iGd~las~d~~~~~SvLvvq  774 (792)
                      .+...+.++..|......++.. ..++||+|+|.++..      +++.|      +.+.+-++.   .++++||||-
T Consensus        77 ~~~~~~~~~~~G~~~~~I~~~a~~~~~DLiV~g~~~~~------~~~~~------~s~a~~v~~---~~~~pVLvv~  138 (142)
T PRK10116         77 DYPIEKTFIAYGELSEHILEVCRKHHFDLVICGNHNHS------FFSRA------SCSAKRVIA---SSEVDVLLVP  138 (142)
T ss_pred             CCCeEEEEEecCCHHHHHHHHHHHhCCCEEEEcCCcch------HHHHH------HHHHHHHHh---cCCCCEEEEe
Confidence            2222233344443333333333 336999999998641      22222      223444444   3678999984

>TIGR00793 kdgT 2-keto-3-deoxygluconate transporter

Probab=96.98  E-value=0.047  Score=57.36  Aligned_cols=257  Identities=9%  Similarity=0.077  Sum_probs=133.9

Q ss_pred             HHHHHHHhhccChhhhhcCCcccchHhHHHHHHHHHHHHHHHHHhhccc---c-hhHHHHHHHHHHHhhccHHHHHHHHH
Q 038269           93 ICYMFVLGLEMDPYVIFKPPTRDAIVAYGGMLSTFILGCSLTPFLHYST---H-RKIVVAITLSFTLAGSGSHILTRVIT  168 (792)
Q Consensus        93 ~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~l~p~~~~~~~~~~l~~~~---~-~~~~~al~lg~~ls~Ts~~vv~~iL~  168 (792)
                      ..++|-.|-++|++...+..||...+-..-+++..+++.++..+++...   . ...-..+.+-++++.|.-..=..+..
T Consensus        52 ~~~l~~~Ga~I~~k~~g~~l~kg~~l~~~K~~i~~~~g~~~~~~~g~~Gi~~g~~~GlS~LAiiaA~~nsNggLY~aL~~  131 (314)
T TIGR00793        52 AVWFFCMGASIDLSATGTVLRKSGTLVVTKIAVAWVVAAIASRIIPEDGVEVGFFAGLSTLALVAAMDMTNGGLYASIMQ  131 (314)
T ss_pred             HHHHHHhCCeeeecccchhhhhcceeeeHHHHHHHHHHHHHHHHcCcCCccccceeccHHHHHHHHHhCCcHHHHHHHHH
Confidence            3678899999999999888888887777888889999999888887421   0 00112344445566565555556666


Q ss_pred             hcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhcCC
Q 038269          169 NLKIGKSDIGKLGMAAGIHSDMITMLIICIGAVFVLPQGNNTQEQIQSAIKMSASLIFQSVFAAKVSPVFMNWINNENPE  248 (792)
Q Consensus       169 el~ll~s~~g~l~l~~a~i~Di~~~~ll~i~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~v~r~~~~~i~~~~~~  248 (792)
                      |++ -++|.|-..+.+  ++|.=-+.                             .+++..-+                 
T Consensus       132 qyG-d~~D~gA~~i~s--l~~GPf~T-----------------------------Mi~LG~sG-----------------  162 (314)
T TIGR00793       132 QYG-TKEEAGAFVLMS--LESGPLMT-----------------------------MVILGTAG-----------------  162 (314)
T ss_pred             HcC-CHhhhhhhhhhh--hccCcHHH-----------------------------HHHHhhcc-----------------
Confidence            776 344444221111  11111111                             11111000                 


Q ss_pred             CCcccchhHHHHHHHHHHHHHHhhhhCchhhHHHHHHhhhcCCCCcchHHHHHHHhHHHHhhhhHHHHHhhccccccccc
Q 038269          249 GKAMKGTHLVLSLAFMVAVCSCSPFYGYSPILSAFMAGIFFPSEGRMSKWTVGKVNYLLSTLYYPIFFFWMGFHAKLFTF  328 (792)
Q Consensus       249 ~~~~~e~~~~~il~~~l~~~~~ae~~G~~~~lgafvaGl~l~~~~~~~~~l~~kl~~~~~~~~~PlfF~~~Gl~~d~~~l  328 (792)
                         ..+..+... .               +.+=+++.|+++.|-   .+++.+.+.+- ...++|+|-...|..+|++.+
T Consensus       163 ---lA~ip~~~l-v---------------~~ilPlliG~ilGNL---D~~~r~fl~~~-~~~lIpFf~FaLGaginl~~i  219 (314)
T TIGR00793       163 ---IASFEPHVF-V---------------GAVLPFLVGFALGNL---DPELRDFFSKA-VQTLIPFFAFALGNTIDLGVI  219 (314)
T ss_pred             ---CCCCCHHHH-H---------------HHHHHHHHHHHHhcC---CHHHHHHhccC-CCeeeehhhhhhcCCCCHHHH
Confidence               000001110 0               233377888888874   44556666653 678999999999999998655


Q ss_pred             ccccchhHHHHHHHHHHHHhhhHHHHHHHHHhh-CCChHHHHHHHHHhhhhhHHHHHHHHHhhcccccChhhHHHHHHHH
Q 038269          329 EADTLGTWGRFFFLIVISTAGKVVGTVICGLML-GFHWPESVSLGLLLSAKGHFYIFLAIMGAVHNYITHTTAASLVIMI  407 (792)
Q Consensus       329 ~~~~~~~~~~~~~li~~~~~~K~l~~~l~~~~~-~~~~re~~~lg~~l~~kG~v~l~l~~~~~~~~~i~~~~~~~lv~~~  407 (792)
                      ...+  ..+.++.+. + .+.--...++.-|+. |-+..-....+-.-+.--....+++..-.+....-+..-..+-.++
T Consensus       220 ~~aG--l~GIlLGl~-v-~~vtG~~~~~~dr~~~g~~g~aG~A~sstAGnAvatPaavA~adPs~~~~a~~ATaqvAaav  295 (314)
T TIGR00793       220 IQTG--LLGILLGVS-V-IILTGIPLILADKFIGGGDGTAGIAASSSAGAAVATPVLIAEMVPAFKPVAPAATALVATSV  295 (314)
T ss_pred             HHhC--cchHHHHHH-H-HHHHhHHHHHHHHHhcCCCCchhhHHHHHHHHhhhhHHHHHHhChhhhhhHHHHHHHHHHHH
Confidence            2111  112111111 1 111223334444554 2222223333222111112223333332333323233333344567


Q ss_pred             HHHHhhhhHHHHHhhhhh
Q 038269          408 FFTIVHTPFVVQNIIGRA  425 (792)
Q Consensus       408 vl~~~~~~~li~~l~~~~  425 (792)
                      ++|.+++|.++.|.+|+.
T Consensus       296 ivTaiL~Pilta~~~kr~  313 (314)
T TIGR00793       296 IVTSLLVPIATVWWSKKV  313 (314)
T ss_pred             HHHHHHHHHHHHHHHHhc
Confidence            788888999999988753

This family includes the characterized 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both gram-positive and gram-negative bacteria.

>PRK15118 universal stress global response regulator UspA; Provisional

Probab=96.97  E-value=0.004  Score=59.19  Aligned_cols=134  Identities=13%  Similarity=0.140  Sum_probs=73.0

Q ss_pred             eeEEEEeccCcChHHHHHHHHHHhcCCCeEEEEEEeeecCCCCcccccccccCCcch-hhhhhhhhHHHHHHHHHhhcCC
Q 038269          619 LNVAVIFIGGKDDREALAYASRVARHPAVKLTVIRFLLDNSENPQRRAATYKDNTAE-LEEEMKIDDECFAEFYERQVAE  697 (792)
Q Consensus       619 ~~v~v~f~GG~ddreAL~~a~rma~~~~v~ltv~r~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~l~e~~~~~~~~  697 (792)
                      .+|+++.=|.+..+.||++|..+++..+.+++++++.......... ..  .....+ .+..++.-.+.++++.+..   
T Consensus         4 ~~ILvavD~S~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~l~~~~~~~---   77 (144)
T PRK15118          4 KHILIAVDLSPESKVLVEKAVSMARPYNAKVSLIHVDVNYSDLYTG-LI--DVNLGDMQKRISEETHHALTELSTNA---   77 (144)
T ss_pred             eEEEEEccCChhHHHHHHHHHHHHHhhCCEEEEEEEccChhhhhhh-hh--hcchHHHHHHHHHHHHHHHHHHHHhC---
Confidence            5899999999999999999999999999999999984221100000 00  000000 0011111123344442211   


Q ss_pred             CcEEEEEEecCChHHHHHHHHhh-hcCccEEEEecCCCCCcccccCCcccCCCCccchhhhhhhcCCCCCceeEEEEee
Q 038269          698 GHVAYAEKHLANSSETFATLRSL-EGQYALIIVGRGERANSILTVGMNDWQQCPELGPIGDVLSGSDFLVRTSVLIIKQ  775 (792)
Q Consensus       698 ~~v~y~e~~v~~~~e~~~~i~~~-~~~~dL~iVGr~~~~~s~~~~gl~~w~e~~eLG~iGd~las~d~~~~~SvLvvqq  775 (792)
                       .+.+.+..+..|.-....++.. +.+.||+|+|++++       +   |.   .+|-+-+-+...   ++++||||..
T Consensus        78 -~~~~~~~~~~~G~p~~~I~~~a~~~~~DLIV~Gs~~~-------~---~~---~lgSva~~v~~~---a~~pVLvv~~  139 (144)
T PRK15118         78 -GYPITETLSGSGDLGQVLVDAIKKYDMDLVVCGHHQD-------F---WS---KLMSSARQLINT---VHVDMLIVPL  139 (144)
T ss_pred             -CCCceEEEEEecCHHHHHHHHHHHhCCCEEEEeCccc-------H---HH---HHHHHHHHHHhh---CCCCEEEecC
Confidence             2223333443343222222322 34699999999842       1   11   145455555543   6789999975

>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins

Probab=96.83  E-value=0.11  Score=55.93  Aligned_cols=88  Identities=15%  Similarity=0.223  Sum_probs=63.0

Q ss_pred             cccCCChhHHHHHHHhhccC-ccccccccccccHHHHHHHHHHHHHHHHHHHhhccChhhhhcCCcccchHhHHHHHHHH
Q 038269           49 KPMHQPRITSDIVIGLFLGN-IQPIRNGFELEMIQTLNYIVEFGMICYMFVLGLEMDPYVIFKPPTRDAIVAYGGMLSTF  127 (792)
Q Consensus        49 ~rl~~P~iv~~IlaGillGp-~~~~~~lf~~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~l~p~  127 (792)
                      ....++.++--++.|+++|+ .......+.+.....-+.+-.+|.++    .|.++++.++.+.+.+.+.+....+..++
T Consensus        22 ~~~~l~~~~~AillG~~i~n~~~~~~~~~~~Gi~~~~k~~Lr~gIVL----lG~~l~~~~i~~~G~~~~~~~~~~v~~~~   97 (305)
T PF03601_consen   22 FLPGLGALLIAILLGMLIGNLFFGLPARFKPGIKFSSKKLLRLGIVL----LGFRLSFSDILALGWKGLLIIIIVVILTF   97 (305)
T ss_pred             cccCccHHHHHHHHHHHHhhhccCCcHHHHhHHHHHHHHHHHHHHHH----HCccccHHHHHHhCccHHHHHHHHHHHHH
Confidence            34678999999999999998 33221122111112234666777664    68999999999999988888888888888


Q ss_pred             HHHHHHH-HHhhcc
Q 038269          128 ILGCSLT-PFLHYS  140 (792)
Q Consensus       128 ~~~~~~~-~~l~~~  140 (792)
                      .+++.++ ..++.+
T Consensus        98 ~~~~~lg~r~~~l~  111 (305)
T PF03601_consen   98 LLTYWLGRRLFGLD  111 (305)
T ss_pred             HHHHHHHHHHhCCC
Confidence            8888777 777654

; GO: 0016021 integral to membrane

>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)

Probab=96.82  E-value=0.84  Score=49.54  Aligned_cols=114  Identities=14%  Similarity=0.272  Sum_probs=59.8

Q ss_pred             HHHHHHHHHHHHHHHhhccChhhhhcCC---cccchHhHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHhhc-cH
Q 038269           85 NYIVEFGMICYMFVLGLEMDPYVIFKPP---TRDAIVAYGGMLSTFILGCSLTPFLHYSTHRKIVVAITLSFTLAGS-GS  160 (792)
Q Consensus        85 ~~l~~lgl~~llF~~Gle~d~~~l~~~~---~~~~~ia~~~~l~p~~~~~~~~~~l~~~~~~~~~~al~lg~~ls~T-s~  160 (792)
                      +.....++..++|..|+.++.+++++..   |.....-...+++.-++++++...............+.+-.++.+| +.
T Consensus        30 ~~~~~~~v~~iFf~~Gl~L~~~~l~~~~~~~~~~l~~~~~~fvl~Pll~~~~~~l~~~~~~~~l~~Gl~~~~~lPtTv~S  109 (313)
T PF13593_consen   30 EYVIKYGVALIFFISGLSLPTEELKAALRNWRLHLFVQAFNFVLFPLLGFGLSRLFPAFLPPELALGLLILACLPTTVSS  109 (313)
T ss_pred             hhhHHHHHHHHHHHHcCCCCHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHhhCCchhhH
Confidence            3566677778889999999999998644   4333333333444333455555555321111122233333333332 22


Q ss_pred             HHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 038269          161 HILTRVITNLKIGKSDIGKLGMAAGIHSDMITMLIICIGAVFVL  204 (792)
Q Consensus       161 ~vv~~iL~el~ll~s~~g~l~l~~a~i~Di~~~~ll~i~~~~~~  204 (792)
                      .++   ++..-  +.+ -..++..+.++.++++++.-+...+..
T Consensus       110 ~v~---~T~~A--gGN-~a~Al~~~~~snllgv~ltP~ll~l~l  147 (313)
T PF13593_consen  110 SVV---LTRLA--GGN-VALALFNAVLSNLLGVFLTPLLLLLLL  147 (313)
T ss_pred             HHH---HHHHc--CCC-HHHHHHHHHHHhhhhHhHHHHHHHHHh
Confidence            222   22222  222 246666777888888777655544443

>PRK15456 universal stress protein UspG; Provisional

Probab=96.69  E-value=0.037  Score=52.47  Aligned_cols=136  Identities=13%  Similarity=0.083  Sum_probs=77.8

Q ss_pred             eeEEEEeccCc--ChHHHHHHHHHHhcCCCeEEEEEEeeecCCCCcccccccccCCcchhhhhhhhhHHHHHHHHHhhcC
Q 038269          619 LNVAVIFIGGK--DDREALAYASRVARHPAVKLTVIRFLLDNSENPQRRAATYKDNTAELEEEMKIDDECFAEFYERQVA  696 (792)
Q Consensus       619 ~~v~v~f~GG~--ddreAL~~a~rma~~~~v~ltv~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~e~~~~~~~  696 (792)
                      ++|++|.=|..  ..+.|+++|.++++.. .+++++|+++...........  ......++..++.-++.++++.++.. 
T Consensus         3 ~~ILv~vD~S~~~~s~~al~~A~~la~~~-~~l~llhv~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~-   78 (142)
T PRK15456          3 KTIIMPVDVFEMELSDKAVRHAEFLAQDD-GVIHLLHVLPGSASLSLHRFA--ADVRRFEEHLQHEAEERLQTMVSHFT-   78 (142)
T ss_pred             ccEEEeccCCchhHHHHHHHHHHHHHhcC-CeEEEEEEecCcccccccccc--cchhhHHHHHHHHHHHHHHHHHHHhC-
Confidence            58999998874  7899999999999875 589999998643211000000  00000111222333455666644321 


Q ss_pred             CCcEEEEEEecCChHHHHHHHHhhh--cCccEEEEecCCCCCcccccCCcccCCCCccchhhhhhhcCCCCCceeEEEEe
Q 038269          697 EGHVAYAEKHLANSSETFATLRSLE--GQYALIIVGRGERANSILTVGMNDWQQCPELGPIGDVLSGSDFLVRTSVLIIK  774 (792)
Q Consensus       697 ~~~v~y~e~~v~~~~e~~~~i~~~~--~~~dL~iVGr~~~~~s~~~~gl~~w~e~~eLG~iGd~las~d~~~~~SvLvvq  774 (792)
                      .....+. ..+..| +..+.|.+.+  .+.||+|+|.+++  +     +.+    .=+|-..+-++..   ++++||||.
T Consensus        79 ~~~~~v~-~~v~~G-~~~~~I~~~a~~~~~DLIVmG~~g~--~-----~~~----~llGS~a~~v~~~---a~~pVLvV~  142 (142)
T PRK15456         79 IDPSRIK-QHVRFG-SVRDEVNELAEELGADVVVIGSRNP--S-----IST----HLLGSNASSVIRH---ANLPVLVVR  142 (142)
T ss_pred             CCCcceE-EEEcCC-ChHHHHHHHHhhcCCCEEEEcCCCC--C-----ccc----eecCccHHHHHHc---CCCCEEEeC
Confidence            1223332 333334 2333344433  3699999999753  2     112    2278888888875   778999983

>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]

Probab=96.69  E-value=1.3  Score=48.11  Aligned_cols=329  Identities=13%  Similarity=0.108  Sum_probs=155.8

Q ss_pred             HHHHHHHHHHHHHHHHHhHcccCCCh--hHH-HHHHHhhccCccccccccccccHHHHHHHHHHHHHHHHHHHhhccChh
Q 038269           30 KIVGLLLAYVLTNLAHHLLKPMHQPR--ITS-DIVIGLFLGNIQPIRNGFELEMIQTLNYIVEFGMICYMFVLGLEMDPY  106 (792)
Q Consensus        30 ~l~~i~lil~~~~~~~~l~~rl~~P~--iv~-~IlaGillGp~~~~~~lf~~~~~~~l~~l~~lgl~~llF~~Gle~d~~  106 (792)
                      ...|.++.++++.+.++++..+++|.  ..| -+++|++.+-.+..  +.   ..   ..+...|.+.+=-.+|..+..+
T Consensus         7 ~~~~w~i~l~ls~~~g~l~~~~~vPa~~mlG~~l~a~~v~~~~~~~--l~---~P---~~l~~~~q~ilG~~ig~~~t~s   78 (352)
T COG3180           7 IILQWFILLLLSLLGGWLLTLLHVPAAWMLGAPLLAGIVAGLRGLT--LP---LP---RGLFKAGQVILGIMIGASLTPS   78 (352)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcccc--cc---CC---hHHHHHHHHHHHHHHhhhcCHH
Confidence            35677778888889999999988875  455 56667766632211  11   11   3344455555556788888877


Q ss_pred             hhh---cCCcccchHhHHHHHHHHHHHHHHHHHhh-cccchhHHHHHHHHHHHhhccHHHHHHHHHhcCCCCCchhHHHH
Q 038269          107 VIF---KPPTRDAIVAYGGMLSTFILGCSLTPFLH-YSTHRKIVVAITLSFTLAGSGSHILTRVITNLKIGKSDIGKLGM  182 (792)
Q Consensus       107 ~l~---~~~~~~~~ia~~~~l~p~~~~~~~~~~l~-~~~~~~~~~al~lg~~ls~Ts~~vv~~iL~el~ll~s~~g~l~l  182 (792)
                      .+.   +++-....+.+    ++...+...++++. ++. .+...+++ |  .++-.......+-+|.| .|.+.-.+..
T Consensus        79 ~l~~l~~~w~~~~~v~~----~tl~~s~l~g~ll~r~~~-~~~~Ta~~-g--s~PGgas~m~~iA~d~g-Ad~~~VAl~Q  149 (352)
T COG3180          79 VLDTLKSNWPIVLVVLL----LTLLSSILLGWLLKRFSI-LPGNTAFL-G--SSPGGASAMVSIAQDYG-ADLRLVALMQ  149 (352)
T ss_pred             HHHHHHHcccHHHHHHH----HHHHHHHHHHHHHHHhcC-CCcchhhH-h--cCCchHHHHHHHHHHhC-CChhHHHHHH
Confidence            664   44443333333    34444444444442 121 11111221 2  22222222333335655 2333211111


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhcCCC------Ccccchh
Q 038269          183 AAGIHSDMITMLIICIGAVFVLPQGNNTQEQIQSAIKMSASLIFQSVFAAKVSPVFMNWINNENPEG------KAMKGTH  256 (792)
Q Consensus       183 ~~a~i~Di~~~~ll~i~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~v~r~~~~~i~~~~~~~------~~~~e~~  256 (792)
                                                        .++.+.    ++....++.+....  .++..++      .++....
T Consensus       150 ----------------------------------~lRvl~----Vvl~vplv~~~~~~--~~a~~~~~~~i~~~~~~~~~  189 (352)
T COG3180         150 ----------------------------------YLRVLF----VVLLAPLVSRLFVG--DGANGSGTPEIWLPPVDWLI  189 (352)
T ss_pred             ----------------------------------HHHHHH----HHHHHHHHHHHhcC--CCCCCCCCccccCchhhHHH
Confidence                                              111111    11111111111110  0111000      0111111


Q ss_pred             HHHHHHHHHHHHHHhhhhCch--hhHHHHHHhhhcCCCCcchHHHHHHHhHHHHhhhhHHHHHhhcccccccccccccch
Q 038269          257 LVLSLAFMVAVCSCSPFYGYS--PILSAFMAGIFFPSEGRMSKWTVGKVNYLLSTLYYPIFFFWMGFHAKLFTFEADTLG  334 (792)
Q Consensus       257 ~~~il~~~l~~~~~ae~~G~~--~~lgafvaGl~l~~~~~~~~~l~~kl~~~~~~~~~PlfF~~~Gl~~d~~~l~~~~~~  334 (792)
                      +.+.+...+..+.+...+++.  ..+|+++.|..+.-......++-+-+.    .+-.-+.-..+|.++|-..+.. ...
T Consensus       190 ~~~l~~~~~~~g~l~~~lr~Pa~~ll~~l~l~a~v~~~~~~~~~lP~wl~----~va~~~iG~~IG~~f~~~~l~~-~~r  264 (352)
T COG3180         190 LLLLILAALLGGLLGKLLRFPAPTLLGPLLLGAIVHFGGGITIQLPAWLL----AVAQALIGALIGSRFDRSILRE-AKR  264 (352)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhhcccceeeeCCHHHH----HHHHHHHHHHHcccccHHHHHH-hHh
Confidence            334444445555556666653  467777777777653311111111111    2222334567788888544321 112


Q ss_pred             hHHHHHHHHHHHHhhhHHHHHHHHHhhCCChHHHHHHHHHhhhhhHHHHHHHHHhhcccccChhhHHHHHHHHHHHHhhh
Q 038269          335 TWGRFFFLIVISTAGKVVGTVICGLMLGFHWPESVSLGLLLSAKGHFYIFLAIMGAVHNYITHTTAASLVIMIFFTIVHT  414 (792)
Q Consensus       335 ~~~~~~~li~~~~~~K~l~~~l~~~~~~~~~re~~~lg~~l~~kG~v~l~l~~~~~~~~~i~~~~~~~lv~~~vl~~~~~  414 (792)
                      .....++.++..++.-....++.+++.+.++.++..   ..+|-|.-+++....+.+...  +-+-+.=++=.++-..+.
T Consensus       265 ~~~~~~v~ii~l~~~~~~~a~ll~~~~~i~~~ta~L---a~sPGGl~~ma~~A~~l~ad~--a~V~a~q~lRll~il~i~  339 (352)
T COG3180         265 LLPAILVSIIALMAIAAGMAGLLSWLTGIDLNTAYL---ATSPGGLDTMAAIAAALGADP--AFVMALQVLRLLFILLLG  339 (352)
T ss_pred             hcchHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH---HcCCCcHHHHHHHHHHcCCCh--HHHHHHHHHHHHHHHHHH
Confidence            222334444555555666677778889999988754   357989888887766655221  111111122223333445


Q ss_pred             hHHHHHhhhhh
Q 038269          415 PFVVQNIIGRA  425 (792)
Q Consensus       415 ~~li~~l~~~~  425 (792)
                      |++.|++.++.
T Consensus       340 p~l~r~l~~~~  350 (352)
T COG3180         340 PALARFLSKRA  350 (352)
T ss_pred             HHHHHHHHHHc
Confidence            88888765543

>PRK09982 universal stress protein UspD; Provisional

Probab=96.67  E-value=0.019  Score=54.52  Aligned_cols=39  Identities=26%  Similarity=0.309  Sum_probs=36.4

Q ss_pred             eeEEEEeccCcChHHHHHHHHHHhcCCCeEEEEEEeeec
Q 038269          619 LNVAVIFIGGKDDREALAYASRVARHPAVKLTVIRFLLD  657 (792)
Q Consensus       619 ~~v~v~f~GG~ddreAL~~a~rma~~~~v~ltv~r~~~~  657 (792)
                      ++|+++.=|+++.+.|+++|.+||+.++++++++++++.
T Consensus         4 k~ILvavD~S~~s~~al~~A~~lA~~~~a~l~llhV~~~   42 (142)
T PRK09982          4 KHIGVAISGNEEDALLVNKALELARHNDAHLTLIHIDDG   42 (142)
T ss_pred             eEEEEEecCCcchHHHHHHHHHHHHHhCCeEEEEEEccC
Confidence            589999999999999999999999999999999999754

>COG0798 ACR3 Arsenite efflux pump ACR3 and related permeases [Inorganic ion transport and metabolism]

Probab=96.59  E-value=0.78  Score=49.19  Aligned_cols=139  Identities=15%  Similarity=0.153  Sum_probs=70.6

Q ss_pred             hHHHHHHHhhccCcccc-ccccccccHHHHHHHHHHHHHHHHHHHhhccChhhhhcCCcccchHh---HHHHHH-HHHHH
Q 038269           56 ITSDIVIGLFLGNIQPI-RNGFELEMIQTLNYIVEFGMICYMFVLGLEMDPYVIFKPPTRDAIVA---YGGMLS-TFILG  130 (792)
Q Consensus        56 iv~~IlaGillGp~~~~-~~lf~~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l~~~~~~~~~ia---~~~~l~-p~~~~  130 (792)
                      +.-.+++|+.+|..... ......-+....+.--.+|+++.|+=.=+++|.+++++..|+.-.+.   ....++ |+..-
T Consensus        20 v~l~i~~Gi~lG~~~p~~~~~l~~~~~~~~sipiai~L~~MmYP~m~ki~~~~~~~v~k~~k~L~lsL~~Nwii~P~lm~   99 (342)
T COG0798          20 VFLAIAIGILLGVHFPGLAQLLGKLEFGGVSIPIAIGLILMMYPPMLKIDFEELKNVFKDPKPLILSLFVNWIIGPLLMF   99 (342)
T ss_pred             HHHHHHHHHHHHhcccchhhhcccceeCceehhHHHHHHHHHhHHHhcCCHHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence            44556778888853211 01111113344555667888888888888999999986655432222   222222 55433


Q ss_pred             HHHHHHhhcccchhHHHHHHHHHHHhhccHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 038269          131 CSLTPFLHYSTHRKIVVAITLSFTLAGSGSHILTRVITNLKIGKSDIGKLGMAAGIHSDMITMLIICIGAVF  202 (792)
Q Consensus       131 ~~~~~~l~~~~~~~~~~al~lg~~ls~Ts~~vv~~iL~el~ll~s~~g~l~l~~a~i~Di~~~~ll~i~~~~  202 (792)
                      .....+++  ..+    ....|.++-.-+ |..+-++.=-++.+.+ -..++..-.+||++.+++++....+
T Consensus       100 ~la~~fl~--~~p----ey~~GlILlglA-pC~aMVivw~~La~Gd-~~~tlv~Va~n~l~qiv~y~~~~~~  163 (342)
T COG0798         100 ALAWFFLP--DEP----EYRAGLILLGLA-PCIAMVIVWSGLAKGD-RELTLVLVAFNSLLQIVLYAPLGKF  163 (342)
T ss_pred             HHHHHHhC--CCH----HHHHHHHHHHhh-hhHHHHHHHHhhccCc-HhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            33333332  111    133333333322 2222222212333333 2455666679999999888665443

>COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism]

Probab=96.32  E-value=0.54  Score=51.32  Aligned_cols=118  Identities=9%  Similarity=0.071  Sum_probs=69.4

Q ss_pred             HHHhhhhC-----chhhHHHHHHhhhcCCCCcc--hHHHHHHHhHHHHhhhhHHHHHhhcccccccccccccchhHHHHH
Q 038269          268 CSCSPFYG-----YSPILSAFMAGIFFPSEGRM--SKWTVGKVNYLLSTLYYPIFFFWMGFHAKLFTFEADTLGTWGRFF  340 (792)
Q Consensus       268 ~~~ae~~G-----~~~~lgafvaGl~l~~~~~~--~~~l~~kl~~~~~~~~~PlfF~~~Gl~~d~~~l~~~~~~~~~~~~  340 (792)
                      .++.+.++     +....++++.|+++.+.-+.  ..++.++..+.+.++-+.+|....=|++.+..+..   -....++
T Consensus       235 ~~i~~~l~~~~~~lP~fv~~lfvgiIvrni~~~~~~~~v~~~~v~~ig~vsL~lflamALmSlkLweL~~---l~lpl~v  311 (404)
T COG0786         235 KIINQLLKSLGLALPLFVMCLFVGVILRNILDLLKKYRVFRRAVDVIGNVSLSLFLAMALMSLKLWELAD---LALPLLV  311 (404)
T ss_pred             HHHHHHHhhccccccHHHHHHHHHHHHHhHHHHhccccccHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh---ccccHHH
Confidence            44555555     56678999999998874221  11233344444567777777777667777654421   1222333


Q ss_pred             HHHHHHHhhhHHHHHHHHHhhCCChHHHHHHHHHhhh-hhHHHHHHHHH
Q 038269          341 FLIVISTAGKVVGTVICGLMLGFHWPESVSLGLLLSA-KGHFYIFLAIM  388 (792)
Q Consensus       341 ~li~~~~~~K~l~~~l~~~~~~~~~re~~~lg~~l~~-kG~v~l~l~~~  388 (792)
                      ++.+-..+.-+.+.++..|..|-++..+...+.-++. -|...-++++.
T Consensus       312 iL~vQ~i~m~lfa~fvtfr~mG~~YdAaV~~~G~~G~gLGATPtAianM  360 (404)
T COG0786         312 ILAVQTIVMALFAIFVTFRLMGKNYDAAVLAAGHCGFGLGATPTAIANM  360 (404)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCcchhHHHHhcccccCccCCcHHHHHhh
Confidence            3333444445666777788889888777665443433 25566666664

>COG2855 Predicted membrane protein [Function unknown]

Probab=96.29  E-value=2.1  Score=46.07  Aligned_cols=90  Identities=17%  Similarity=0.253  Sum_probs=64.6

Q ss_pred             hHcccCCChhHHHHHHHhhccCccccccccccccHHHHHHHHHHHHHHHHHHHhhccChhhhhcCCcccchHhHHHHHHH
Q 038269           47 LLKPMHQPRITSDIVIGLFLGNIQPIRNGFELEMIQTLNYIVEFGMICYMFVLGLEMDPYVIFKPPTRDAIVAYGGMLST  126 (792)
Q Consensus        47 l~~rl~~P~iv~~IlaGillGp~~~~~~lf~~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~l~p  126 (792)
                      .....++|..+--|+.|+++|.....+.-+...-.-.-..+-++|+++    .|.++++.++...+.+.+.+-...+..+
T Consensus        31 ~~~~~~l~al~lAIllGi~l~~l~~~~~~~~~GI~fs~k~LLr~gIvL----lG~~ltl~~i~~~G~~~v~~~~~~l~~t  106 (334)
T COG2855          31 FSIHLGLSALTLAILLGILLGILPQIPAQTSAGITFSSKKLLRLGIVL----LGFRLTLSDIADVGGSGVLIIAITLSST  106 (334)
T ss_pred             HhhhcCchHHHHHHHHHHHHhccccchhhhccchhhhHHHHHHHHHHH----HcceeeHHHHHHcCccHHHHHHHHHHHH
Confidence            344577999999999999999543221111112222344556677664    5899999999999999888888888888


Q ss_pred             HHHHHHHHHHhhcc
Q 038269          127 FILGCSLTPFLHYS  140 (792)
Q Consensus       127 ~~~~~~~~~~l~~~  140 (792)
                      +++++.++.+++.+
T Consensus       107 ~~~~~~lg~~lgld  120 (334)
T COG2855         107 FLFAYFLGKLLGLD  120 (334)
T ss_pred             HHHHHHHHHHhCCC
Confidence            88888888877754

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=96.18  E-value=0.11  Score=61.86  Aligned_cols=116  Identities=16%  Similarity=0.189  Sum_probs=71.6

Q ss_pred             HHHHHHHHHHHHHHhhhhCchhhHHHHHHhhhcCCCC-cchHHHHHHHhHHHHhhhhHHHHHhhcccccccccccccchh
Q 038269          257 LVLSLAFMVAVCSCSPFYGYSPILSAFMAGIFFPSEG-RMSKWTVGKVNYLLSTLYYPIFFFWMGFHAKLFTFEADTLGT  335 (792)
Q Consensus       257 ~~~il~~~l~~~~~ae~~G~~~~lgafvaGl~l~~~~-~~~~~l~~kl~~~~~~~~~PlfF~~~Gl~~d~~~l~~~~~~~  335 (792)
                      +.+.++.+.++..++..+|+++++|=.++|+++.... ..-.. .+.++.+ .++-..++...+|+++|++.+..    .
T Consensus        10 ~~~~l~~a~i~~~l~~rl~lp~vlgyilaGillGP~~lg~i~~-~~~i~~l-aelGvv~LlF~iGLEl~~~~l~~----~   83 (621)
T PRK03562         10 ALIYLGAAVLIVPIAVRLGLGSVLGYLIAGCIIGPWGLRLVTD-VESILHF-AEFGVVLMLFVIGLELDPQRLWK----L   83 (621)
T ss_pred             HHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhCcccccCCCC-HHHHHHH-HHHHHHHHHHHHHhCcCHHHHHH----H
Confidence            3445555566677888899999999999999885311 11111 2334544 56777778888999999876631    2


Q ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHhhCCChHHHHHHHHHhhhh
Q 038269          336 WGRFFFLIVISTAGKVVGTVICGLMLGFHWPESVSLGLLLSAK  378 (792)
Q Consensus       336 ~~~~~~li~~~~~~K~l~~~l~~~~~~~~~re~~~lg~~l~~k  378 (792)
                      ...++.+-...++.-++..+..+++.|.+|..++.+|..+..-
T Consensus        84 ~~~~~~~g~~qv~~~~~~~~~~~~~~g~~~~~al~ig~~la~S  126 (621)
T PRK03562         84 RRSIFGGGALQMVACGGLLGLFCMLLGLRWQVALLIGLGLALS  126 (621)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence            2222222222222223334455677899999999998877544

>PF03390 2HCT: 2-hydroxycarboxylate transporter family; InterPro: IPR004679 The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom

Probab=96.15  E-value=0.73  Score=51.18  Aligned_cols=284  Identities=12%  Similarity=0.110  Sum_probs=139.1

Q ss_pred             ccccccHHHHHHHHHHHHHHHHHHH----h--hccChhhhhcCCcccchHhHHHHHHHHHHHHHHHHHhhcccchhHHHH
Q 038269           75 GFELEMIQTLNYIVEFGMICYMFVL----G--LEMDPYVIFKPPTRDAIVAYGGMLSTFILGCSLTPFLHYSTHRKIVVA  148 (792)
Q Consensus        75 lf~~~~~~~l~~l~~lgl~~llF~~----G--le~d~~~l~~~~~~~~~ia~~~~l~p~~~~~~~~~~l~~~~~~~~~~a  148 (792)
                      ++|.+..+..+.+.+-+=.+.+|.+    |  +.||.+.+.|...|.....+.+.+..++++.+++.+++++...   ..
T Consensus        77 ~ip~~~~~~v~~fm~~~~Fl~ffIa~LI~GSILgm~RklLika~~r~~p~il~g~~~a~~~g~lvG~l~G~~~~~---~i  153 (414)
T PF03390_consen   77 LIPESVVEAVTNFMKGSNFLYFFIAALIVGSILGMNRKLLIKAFARFIPPILGGVIGAFLLGGLVGMLFGYSFKD---AI  153 (414)
T ss_pred             CCCHHHHHHHHHHhccCChHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH---HH
Confidence            5564444444444433222233333    2  5889999999888888777888888888888888888764322   11


Q ss_pred             HHHHHHH-----hhccHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhh------H---
Q 038269          149 ITLSFTL-----AGSGSHILTRVITNLKIGKSDIGKLGMAAGIHSDMITMLIICIGAVFVLPQGNNTQEQ------I---  214 (792)
Q Consensus       149 l~lg~~l-----s~Ts~~vv~~iL~el~ll~s~~g~l~l~~a~i~Di~~~~ll~i~~~~~~~~~~~~~~~------~---  214 (792)
                      +.+..=.     ..-+.|...-.-+-.+...++.-..++.+.++..+++++.-+++--+......++.+.      .   
T Consensus       154 ~~i~lPIMgGG~GaGavPLS~~Ya~~~g~~~~~~~s~~ipa~~lgNi~AIi~aglL~~lg~~~P~ltGnG~L~~~~~~~~  233 (414)
T PF03390_consen  154 FYIVLPIMGGGMGAGAVPLSQIYAEALGQDAEEYFSQLIPALTLGNIFAIIFAGLLNKLGKKKPKLTGNGQLLKGGDDEE  233 (414)
T ss_pred             HHHHhhhcCCCccccHhHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCceEEeCCcccc
Confidence            1211111     0112222111111223333444445555666666666665554433322110000000      0   


Q ss_pred             --------HHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhcCCCCcccchhHHHHHHHHHHHHHHhhhhCchhhHHHHHHh
Q 038269          215 --------QSAIKMSASLIFQSVFAAKVSPVFMNWINNENPEGKAMKGTHLVLSLAFMVAVCSCSPFYGYSPILSAFMAG  286 (792)
Q Consensus       215 --------~~~l~~~~~~i~~~~~~~~v~r~~~~~i~~~~~~~~~~~e~~~~~il~~~l~~~~~ae~~G~~~~lgafvaG  286 (792)
                              ..-...+. .-++..+.+|....+.                               ...+++|...-..++-
T Consensus       234 ~~~~~~~~~~~~~~~g-~Gllla~~~y~~G~ll-------------------------------~~~i~ih~~a~mIi~~  281 (414)
T PF03390_consen  234 EEAKKKEKPIDFSDMG-AGLLLACSFYILGVLL-------------------------------SKLIGIHAYAWMIILV  281 (414)
T ss_pred             ccccccCCCCCHHHHH-HHHHHHHHHHHHHHHH-------------------------------HHhcCCcHHHHHHHHH
Confidence                    00000000 1111112222222222                               2333444333322222


Q ss_pred             hhcCCC---CcchHHHHHHHhHHHHhhhhHHHHHhhccc-ccccccccccchhHHHHHHHHHHHHhhhHHHHHHHHHhhC
Q 038269          287 IFFPSE---GRMSKWTVGKVNYLLSTLYYPIFFFWMGFH-AKLFTFEADTLGTWGRFFFLIVISTAGKVVGTVICGLMLG  362 (792)
Q Consensus       287 l~l~~~---~~~~~~l~~kl~~~~~~~~~PlfF~~~Gl~-~d~~~l~~~~~~~~~~~~~li~~~~~~K~l~~~l~~~~~~  362 (792)
                      .++.-.   |+.-++=..+...|...-+.+-..+-+|+. +|++.+.  ..-++.. +++++..+++-.++.++.+++.|
T Consensus       282 ~i~K~~~lvP~~~e~~a~~~~~f~~~~lt~~lLvgiGv~~~~l~~l~--~a~t~~~-vv~~~~~Vl~~~~~a~~vG~l~g  358 (414)
T PF03390_consen  282 AIVKAFGLVPESLEEGAKQWYKFFSKNLTWPLLVGIGVAYTDLNDLI--AAFTPQY-VVIVLATVLGAVIGAFLVGKLVG  358 (414)
T ss_pred             HHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCcHHHHH--HHhCHHH-HHHHHHHHHHHHHHHHHHHHHhC
Confidence            222211   112222233555555566666677778888 8876553  1224443 34455566677888888999999


Q ss_pred             CChHHH-HHHHHHhhhh-hHHHHHHHHHhhcccccC
Q 038269          363 FHWPES-VSLGLLLSAK-GHFYIFLAIMGAVHNYIT  396 (792)
Q Consensus       363 ~~~re~-~~lg~~l~~k-G~v~l~l~~~~~~~~~i~  396 (792)
                      +-+-|+ +..|+.++.+ |.-++++.+.+...+++.
T Consensus       359 ~YPvEsAItaGLC~an~GGtGDvAVLsAa~RM~Lmp  394 (414)
T PF03390_consen  359 FYPVESAITAGLCMANMGGTGDVAVLSAANRMELMP  394 (414)
T ss_pred             CChHHHHHHhhhcccCCCCCCcchheehhhhccccc
Confidence            866555 5557566554 667777777766666554

They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate []. The majority of proteins in this entry are known or predicted members of the citrate:cation symporter (CCS) family. They contain the predicted twelve-transmembrane helix motif common to many secondary transporters []. Most of the characterised proteins in this entry are specific for citrate, with either Na+ of H+ as the contransported cation. However, one member is capable of cotransporting either citrate or malate with H+ [], while another has been shown to be an Na+-dependent malate cotransporter [].; GO: 0008514 organic anion transmembrane transporter activity, 0015711 organic anion transport, 0016021 integral to membrane

>COG3493 CitS Na+/citrate symporter [Energy production and conversion]

Probab=96.11  E-value=0.63  Score=50.25  Aligned_cols=85  Identities=18%  Similarity=0.307  Sum_probs=52.1

Q ss_pred             HhhhhHHHHHhhccc-ccccccccccchhHHHHHHHHHHHHhhhHHHHHHHHHhhCCChHHHHH-HHHHhhhh-hHHHHH
Q 038269          308 STLYYPIFFFWMGFH-AKLFTFEADTLGTWGRFFFLIVISTAGKVVGTVICGLMLGFHWPESVS-LGLLLSAK-GHFYIF  384 (792)
Q Consensus       308 ~~~~~PlfF~~~Gl~-~d~~~l~~~~~~~~~~~~~li~~~~~~K~l~~~l~~~~~~~~~re~~~-lg~~l~~k-G~v~l~  384 (792)
                      ..+.-|+.+ .+|.. +|+..+.  +.-+|..++ +.+...++-..+.++.+|+.|+-+-|+.. -|+.|+.+ |.-+++
T Consensus       326 k~~t~~Lm~-giGv~ytdl~ev~--~alt~~~vi-i~~~vVl~~i~~~~f~grl~~~YPVEaAI~aglC~a~~GGtGDva  401 (438)
T COG3493         326 KNLTWPLMA-GIGVAYTDLNEVA--AALTWQNVI-IALSVVLGAILGGAFVGRLMGFYPVEAAITAGLCMANMGGTGDVA  401 (438)
T ss_pred             HhhHHHHHH-hhhhccccHHHHH--HHhchhHHH-HHHHHHHHHHHHHHHHHHHhcCCchHHHHHHhHHhcCCCCCCchH
Confidence            444445444 45666 7775442  233454433 34455566777888899999986655544 45888766 566777


Q ss_pred             HHHHhhcccccC
Q 038269          385 LAIMGAVHNYIT  396 (792)
Q Consensus       385 l~~~~~~~~~i~  396 (792)
                      +.+.+-..++++
T Consensus       402 VLsAa~RM~Lmp  413 (438)
T COG3493         402 VLSAADRMELMP  413 (438)
T ss_pred             Hhhhcchhcccc
Confidence            777666656554

>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate

Probab=96.09  E-value=1.8  Score=48.05  Aligned_cols=90  Identities=11%  Similarity=0.190  Sum_probs=48.1

Q ss_pred             CchhhHHHHHHhhhcCCCC------cchHHHHHHHhHHHHhhhhHHHHHhhcccccccccccccchhHHHHHHH-HHHHH
Q 038269          275 GYSPILSAFMAGIFFPSEG------RMSKWTVGKVNYLLSTLYYPIFFFWMGFHAKLFTFEADTLGTWGRFFFL-IVIST  347 (792)
Q Consensus       275 G~~~~lgafvaGl~l~~~~------~~~~~l~~kl~~~~~~~~~PlfF~~~Gl~~d~~~l~~~~~~~~~~~~~l-i~~~~  347 (792)
                      .++...+|++.|+++.+..      ...++..+++    .++.+-+|.+..=+.+++..+.    +.+..++++ ++-.+
T Consensus       246 ~lP~f~~ami~g~ivrn~~~~~~~~~id~~~i~~I----~~~sL~~fl~~almsl~l~~l~----~~a~Plliil~~q~i  317 (368)
T PF03616_consen  246 TLPLFVGAMIVGIIVRNILDKTGKYKIDRKTIDRI----SGISLDLFLAMALMSLKLWVLA----DYALPLLIILAVQTI  317 (368)
T ss_pred             CCchHHHHHHHHHHHHHHHHHhCcccCCHHHHHHH----HHHHHHHHHHHHHHhccHHHHH----HHHHHHHHHHHHHHH
Confidence            3456789999999987632      1223334444    4444555544444556654442    233333333 33333


Q ss_pred             hhhHHHHHHHHHhhCCChHHHHHHHH
Q 038269          348 AGKVVGTVICGLMLGFHWPESVSLGL  373 (792)
Q Consensus       348 ~~K~l~~~l~~~~~~~~~re~~~lg~  373 (792)
                      +.=+...++..|..|-++ |+..+++
T Consensus       318 ~~~~f~~fv~fr~~gkdy-daavm~~  342 (368)
T PF03616_consen  318 LMVLFAYFVTFRVMGKDY-DAAVMSA  342 (368)
T ss_pred             HHHHHHHHHhhhhhCCCh-hHHHHhh
Confidence            334445566677888886 5555433

The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane

>COG0589 UspA Universal stress protein UspA and related nucleotide-binding proteins [Signal transduction mechanisms]

Probab=96.07  E-value=0.13  Score=48.74  Aligned_cols=142  Identities=20%  Similarity=0.236  Sum_probs=79.0

Q ss_pred             ceEEEEec-CCCChhhHHHHHHHhcCCCCCCceEEEEEEeeecccchhhhhcccCccccccchhhhhhhhHHHHHHHHHh
Q 038269          445 LQILLCLH-GSQNITSTLNFLEISRGTANPGVAVYVTDMIELTDQIAATLVQNEGIDTVTVTDKAVMEMREEITTAVQSY  523 (792)
Q Consensus       445 lrILvcv~-~~~~~~~li~l~~~~~~~~~sp~~v~~lhLvel~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~  523 (792)
                      .++++... +.+........+.......  ...+++++.++-.+.............. ...........++..+..+..
T Consensus         6 ~~il~~~d~~s~~~~~a~~~a~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~   82 (154)
T COG0589           6 KKILVAVDVGSEAAEKALEEAVALAKRL--GAPLILLVVIDPLEPTALVSVALADAPI-PLSEEELEEEAEELLAEAKAL   82 (154)
T ss_pred             ceEEEEeCCCCHHHHHHHHHHHHHHHhc--CCeEEEEEEecccccccccccccccchh-hhhHHHHHHHHHHHHHHHHHH
Confidence            36777776 6666666666666655443  3445677777655433221110000000 000001111234455555554


Q ss_pred             hhccCcceE-EEEeEeecCCCChhHHHHHHHhhcCCcEEEecCCCCccCCCccccCCcchhHHHHHHhhhCCCceEE
Q 038269          524 VDENGGGIT-LKRMLALSTFSGMPQDICILAEDLMVSLIILPFHKRQLEDGTLDEGHPGFRYVNRKLLRNATCSVGI  599 (792)
Q Consensus       524 ~~~~~~~v~-v~~~t~vs~~~~m~~dI~~~a~e~~~~liilp~h~~~~~~g~~~~~~~~~~~~n~~vl~~apCsVgI  599 (792)
                      .+..  ++. ++....-.  ..-.+.|+..|.+.++|+|++|-+++.+.++      -.++++-++|++++||+|-+
T Consensus        83 ~~~~--~~~~~~~~~~~g--~~~~~~i~~~a~~~~adliV~G~~g~~~l~~------~llGsvs~~v~~~~~~pVlv  149 (154)
T COG0589          83 AEAA--GVPVVETEVVEG--SPSAEEILELAEEEDADLIVVGSRGRSGLSR------LLLGSVAEKVLRHAPCPVLV  149 (154)
T ss_pred             HHHc--CCCeeEEEEecC--CCcHHHHHHHHHHhCCCEEEECCCCCccccc------eeeehhHHHHHhcCCCCEEE
Confidence            4322  233 23333222  3336999999999999999999986655432      35778889999999999744

>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family

Probab=95.93  E-value=0.19  Score=53.42  Aligned_cols=141  Identities=17%  Similarity=0.256  Sum_probs=84.3

Q ss_pred             HHHHHHHhhhhCchhhHHHHHHhhhcCCCC-cchHHHHHHHhHHHHhhhhHHHHHhhcccccccccccccchhHHHHHHH
Q 038269          264 MVAVCSCSPFYGYSPILSAFMAGIFFPSEG-RMSKWTVGKVNYLLSTLYYPIFFFWMGFHAKLFTFEADTLGTWGRFFFL  342 (792)
Q Consensus       264 ~l~~~~~ae~~G~~~~lgafvaGl~l~~~~-~~~~~l~~kl~~~~~~~~~PlfF~~~Gl~~d~~~l~~~~~~~~~~~~~l  342 (792)
                      ....+.+++.++++.++|-.++|+++.... ..-+ -.+.++.+ ..+-..++....|+++|++.+..    .+.....+
T Consensus         4 a~~~~~l~~~l~lP~~v~~il~GillGp~~lg~i~-~~~~~~~l-~~igl~~llF~~Gl~~d~~~l~~----~~~~~~~~   77 (273)
T TIGR00932         4 AVLAVPLSRRLGIPSVLGYLLAGVLIGPSGLGLIS-NVEGVNHL-AEFGVILLMFLIGLELDLERLWK----LRKAAFGV   77 (273)
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHhCcccccCCC-ChHHHHHH-HHHHHHHHHHHHHhCCCHHHHHH----HHHHHHHH
Confidence            445577889999999999999999986421 1101 11234444 56667778888999999876642    22222332


Q ss_pred             HHHHHhhh-HHHHHHHHHhhCCChHHHHHHHHHhhhhhHHHHHHHHHhhcccccChhhHHHHHHHHHHHHh
Q 038269          343 IVISTAGK-VVGTVICGLMLGFHWPESVSLGLLLSAKGHFYIFLAIMGAVHNYITHTTAASLVIMIFFTIV  412 (792)
Q Consensus       343 i~~~~~~K-~l~~~l~~~~~~~~~re~~~lg~~l~~kG~v~l~l~~~~~~~~~i~~~~~~~lv~~~vl~~~  412 (792)
                      .+..++.- +...+..+++.+.++.+++.+|..+.+-.  .-+++.+..|.+..+.+.-..++...+++-.
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~ls~Ts--~~v~~~il~~~~~~~~~~g~l~l~~~~~~D~  146 (273)
T TIGR00932        78 GVLQVLVPGVLLGLLLGHLLGLALGAAVVIGIILALSS--TAVVVQVLKERGLLKTPFGQTVLGILLFQDI  146 (273)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhH--HHHHHHHHHHcCcccChHHHHHHHHHHHHHH
Confidence            33333333 33344456778999999999998877542  2333444455555554544444333333333

>PRK12652 putative monovalent cation/H+ antiporter subunit E; Reviewed

Probab=95.86  E-value=0.067  Score=58.78  Aligned_cols=41  Identities=17%  Similarity=0.164  Sum_probs=36.9

Q ss_pred             cceeEEEEeccCcChHHHHHHHHHHhcCC--CeEEEEEEeeec
Q 038269          617 ASLNVAVIFIGGKDDREALAYASRVARHP--AVKLTVIRFLLD  657 (792)
Q Consensus       617 ~~~~v~v~f~GG~ddreAL~~a~rma~~~--~v~ltv~r~~~~  657 (792)
                      ..+||++|+=|....+.|+++|..+|+..  +++++++++++.
T Consensus         4 ~ykkILVavDGSe~S~~Al~~AielA~~~g~~AeL~lL~Vv~~   46 (357)
T PRK12652          4 AANRLLVPVADSVTVRQTVAYAVESAEEAAETPTVHLVAAASG   46 (357)
T ss_pred             ccCeEEEEeCCCHHHHHHHHHHHHHHHhcCCCCEEEEEEEecC
Confidence            34689999999999999999999999884  699999999864

>TIGR00930 2a30 K-Cl cotransporter

Probab=95.82  E-value=7.8  Score=48.59  Aligned_cols=105  Identities=8%  Similarity=0.086  Sum_probs=65.7

Q ss_pred             CcceEEEEecCCCChhhHHHHHHHhcCCCCCCceEEEEEEeeecccchhhhhcccCccccccchhhhhhhhHHHHHHHHH
Q 038269          443 NQLQILLCLHGSQNITSTLNFLEISRGTANPGVAVYVTDMIELTDQIAATLVQNEGIDTVTVTDKAVMEMREEITTAVQS  522 (792)
Q Consensus       443 ~elrILvcv~~~~~~~~li~l~~~~~~~~~sp~~v~~lhLvel~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~  522 (792)
                      -.-++|+.+.+|++-+.+++|+..+.+.+   .-+.+-|+++-+.+...                   +..++..+..+.
T Consensus       574 wrPqiLvl~~~p~~~~~Ll~f~~~l~~~~---gl~i~~~v~~~~~~~~~-------------------~~~~~~~~~~~~  631 (953)
T TIGR00930       574 WRPQCLVLTGPPVCRPALLDFASQFTKGK---GLMICGSVIQGPRLECV-------------------KEAQAAEAKIQT  631 (953)
T ss_pred             cCCeEEEEeCCCcCcHHHHHHHHHhccCC---cEEEEEEEecCchhhhH-------------------HHHHHHHHHHHH
Confidence            34589999999999999999999998442   24556688774321110                   000111112222


Q ss_pred             hhhccCcceEEEEeEeecCCCChhHHHHHHHhh-----cCCcEEEecCCCCccCCC
Q 038269          523 YVDENGGGITLKRMLALSTFSGMPQDICILAED-----LMVSLIILPFHKRQLEDG  573 (792)
Q Consensus       523 ~~~~~~~~v~v~~~t~vs~~~~m~~dI~~~a~e-----~~~~liilp~h~~~~~~g  573 (792)
                      +-+.  ..+.-=....++  +++.+++.++.+-     -+++.++++|...|+.+.
T Consensus       632 ~~~~--~~~~~f~~~~~~--~~~~~g~~~l~q~~GlG~l~PNtv~lg~~~~w~~~~  683 (953)
T TIGR00930       632 WLEK--NKVKAFYAVVVA--DDLREGVRHLIQASGLGRMKPNTLVMGYKKDWRQAE  683 (953)
T ss_pred             HHHH--hCCCeEEEEecC--CCHHHHHHHHHHhcCCCCCCCCEEEecCccchhhcc
Confidence            2111  112222224445  7899999999997     489999999998887543

>PRK05274 2-keto-3-deoxygluconate permease; Provisional

Probab=95.76  E-value=0.62  Score=50.57  Aligned_cols=138  Identities=12%  Similarity=0.068  Sum_probs=73.2

Q ss_pred             HHHHHhhhcCCCCcchHHHHHHHhHHHHhhhhHHHHHhhcccccccccccccchhHHHHHHHHHHHHhhhHHHHHHHHHh
Q 038269          281 SAFMAGIFFPSEGRMSKWTVGKVNYLLSTLYYPIFFFWMGFHAKLFTFEADTLGTWGRFFFLIVISTAGKVVGTVICGLM  360 (792)
Q Consensus       281 gafvaGl~l~~~~~~~~~l~~kl~~~~~~~~~PlfF~~~Gl~~d~~~l~~~~~~~~~~~~~li~~~~~~K~l~~~l~~~~  360 (792)
                      .+++.|..+.+   +.+.+.+.... .-.+++|++-...|.++|++.+...+   +.- +++.+..++......+...|+
T Consensus       178 lplliG~~lgn---l~~~l~~~~~~-Gi~~lLp~~~~~lG~~l~lq~i~~~G---~~G-ilL~~~~~~~t~~~~~~~~Rl  249 (326)
T PRK05274        178 LPLLVGFILGN---LDPELRQFLGK-AVPVLIPFFAFALGNGIDLGTIITAG---LSG-ILLGVAVVAVTGIPLYLADRL  249 (326)
T ss_pred             HHHHHHHHHHh---HHHhhHHHhcC-CcEEEHHHHHHHHhcceeHhHHHhcC---Ccc-hhhhhhHhhccchhhHhHhhe
Confidence            67788888876   33334444443 35669999999999999987664222   211 222223333344444455577


Q ss_pred             hCCChH---HHHHHHHHhhhhhHHHHHHHHHhhcccccChhhHHHHHHHHHHHHhhhhHHHHHhhhhhccc
Q 038269          361 LGFHWP---ESVSLGLLLSAKGHFYIFLAIMGAVHNYITHTTAASLVIMIFFTIVHTPFVVQNIIGRARKH  428 (792)
Q Consensus       361 ~~~~~r---e~~~lg~~l~~kG~v~l~l~~~~~~~~~i~~~~~~~lv~~~vl~~~~~~~li~~l~~~~~~~  428 (792)
                      ++....   -+...+..-+.-|...  ++......+-..++.-..+..++++++++.|.+..|++|+.+++
T Consensus       250 ~~~~~g~~g~a~~ttaG~aic~pAA--vaa~~p~~~~~~~~at~~VA~~vivt~il~P~l~~~~~k~~~~~  318 (326)
T PRK05274        250 IGGGNGVAGAAAGSTAGNAVATPAA--VAAADPSFAPFAPAATAQVAAAVIVTAILAPILTAWWSKRVGKR  318 (326)
T ss_pred             eecCCCcchHHHHHHHHHHHHHHHH--HHhhccccccchHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            743222   1222222111112222  22222222333444444455566688888999999888766554

>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase

Probab=95.74  E-value=2.3  Score=46.23  Aligned_cols=157  Identities=10%  Similarity=-0.014  Sum_probs=88.8

Q ss_pred             HHHHHHHHHHHHHhhhhCch--hhHHHHHHhhhcCCCCcchHHHHHHHhHHHHhhhhHHHHHhhcccccccccccccchh
Q 038269          258 VLSLAFMVAVCSCSPFYGYS--PILSAFMAGIFFPSEGRMSKWTVGKVNYLLSTLYYPIFFFWMGFHAKLFTFEADTLGT  335 (792)
Q Consensus       258 ~~il~~~l~~~~~ae~~G~~--~~lgafvaGl~l~~~~~~~~~l~~kl~~~~~~~~~PlfF~~~Gl~~d~~~l~~~~~~~  335 (792)
                      ...+......+++.+.+++.  .++|+++.+.++.-.....-.+-+.+.    .+..-+.=..+|.+++...+.. -...
T Consensus       158 ~~l~~~~~~g~~l~~~l~iPa~~llGpml~~a~~~~~~~~~~~~P~~l~----~~aqv~iG~~iG~~f~~~~l~~-~~~~  232 (318)
T PF05145_consen  158 ALLALAALAGGLLARRLRIPAPWLLGPMLVSAILNLFGGPSFSLPPWLV----NAAQVLIGASIGSRFTRETLRE-LRRL  232 (318)
T ss_pred             HHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhCCCCCCCHHHH----HHHHHHHHHHHHccccHHHHHH-HHHH
Confidence            34444555566777777764  567777776665542111111111122    2222234467788888654432 1334


Q ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHhhCCChHHHHHHHHHhhhhhHHHHHHHHHhhcccccChhhHHHHHHHHHHHHhhhh
Q 038269          336 WGRFFFLIVISTAGKVVGTVICGLMLGFHWPESVSLGLLLSAKGHFYIFLAIMGAVHNYITHTTAASLVIMIFFTIVHTP  415 (792)
Q Consensus       336 ~~~~~~li~~~~~~K~l~~~l~~~~~~~~~re~~~lg~~l~~kG~v~l~l~~~~~~~~~i~~~~~~~lv~~~vl~~~~~~  415 (792)
                      +...++..+..+..-.+..++.+++.++++.+++.   .+.|-|.-|+.+.....+.+.---..+.+  +=.+...++.|
T Consensus       233 ~~~~l~~~~~~l~~~~~~a~~l~~~~~~~~~t~~L---a~aPGGl~eM~l~A~~l~~d~~~V~~~q~--~Rl~~v~~~~p  307 (318)
T PF05145_consen  233 LPPALLSTLLLLALCALFAWLLSRLTGIDFLTALL---ATAPGGLAEMALIALALGADVAFVAAHQV--VRLLFVLLLAP  307 (318)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH---HhCCccHHHHHHHHHHcCCChHHHHHHHH--HHHHHHHHHHH
Confidence            44455556666666777788888999999988754   35799999998877665543211111111  12223334578


Q ss_pred             HHHHHhhhh
Q 038269          416 FVVQNIIGR  424 (792)
Q Consensus       416 ~li~~l~~~  424 (792)
                      ++.|++.|+
T Consensus       308 ~~~r~~~r~  316 (318)
T PF05145_consen  308 FIARWLRRR  316 (318)
T ss_pred             HHHHHHHHh
Confidence            888876653

The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=95.67  E-value=0.27  Score=58.39  Aligned_cols=114  Identities=18%  Similarity=0.157  Sum_probs=65.2

Q ss_pred             HHHHHHHHHHHHHhhhhCchhhHHHHHHhhhcCCCC-cchHHHHHHHhHHHHhhhhHHHHHhhcccccccccccccchhH
Q 038269          258 VLSLAFMVAVCSCSPFYGYSPILSAFMAGIFFPSEG-RMSKWTVGKVNYLLSTLYYPIFFFWMGFHAKLFTFEADTLGTW  336 (792)
Q Consensus       258 ~~il~~~l~~~~~ae~~G~~~~lgafvaGl~l~~~~-~~~~~l~~kl~~~~~~~~~PlfF~~~Gl~~d~~~l~~~~~~~~  336 (792)
                      .+.++.+.++..++..+|+++++|=.++|+++.... ..-.. .+.++.+ ..+-..++...+|+++|++.+..    ..
T Consensus        11 ~~~l~~a~~~~~l~~rl~~p~ilg~ilaGillGP~~lg~i~~-~~~i~~l-aelGvv~LLF~iGLel~~~~l~~----~~   84 (601)
T PRK03659         11 VLFLFAAVVAVPLAQRLGIGAVLGYLLAGIAIGPWGLGFISD-VDEILHF-SELGVVFLMFIIGLELNPSKLWQ----LR   84 (601)
T ss_pred             HHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhccccccCCCc-HHHHHHH-HHHHHHHHHHHHHhcCCHHHHHH----HH
Confidence            344445555566778889999999999999885421 11111 1334444 56666777778899999876531    11


Q ss_pred             HHHHHHHHHHHhhhHHHHHHHHHhhCCChHHHHHHHHHhhh
Q 038269          337 GRFFFLIVISTAGKVVGTVICGLMLGFHWPESVSLGLLLSA  377 (792)
Q Consensus       337 ~~~~~li~~~~~~K~l~~~l~~~~~~~~~re~~~lg~~l~~  377 (792)
                      ..++.+....++.-++.....+++.|++|..++.+|..+..
T Consensus        85 ~~~~~~g~~~v~~t~~~~~~~~~~~g~~~~~a~~~g~~la~  125 (601)
T PRK03659         85 RSIFGVGAAQVLLSAAVLAGLLMLTDFSWQAAVVGGIGLAM  125 (601)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            11111111112111222223345578999999888875543

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=95.55  E-value=0.33  Score=57.30  Aligned_cols=133  Identities=16%  Similarity=0.107  Sum_probs=77.1

Q ss_pred             HHHHHHHHHHHHhhhhCchhhHHHHHHhhhcCCCC-cchHHHHHHHhHHHHhhhhHHHHHhhcccccccccccccchhHH
Q 038269          259 LSLAFMVAVCSCSPFYGYSPILSAFMAGIFFPSEG-RMSKWTVGKVNYLLSTLYYPIFFFWMGFHAKLFTFEADTLGTWG  337 (792)
Q Consensus       259 ~il~~~l~~~~~ae~~G~~~~lgafvaGl~l~~~~-~~~~~l~~kl~~~~~~~~~PlfF~~~Gl~~d~~~l~~~~~~~~~  337 (792)
                      .+++.++++..++..+|++.++|=.++|+++.... ..-+. .+.++.+ ..+-+-++....|+++|++.+...    ..
T Consensus        13 ~~l~~a~~~~~l~~rl~~P~ivg~IlaGillGp~~lg~~~~-~~~~~~l-a~lGli~llF~~Gle~d~~~l~~~----~~   86 (558)
T PRK10669         13 GGLVLAFILGMLANRLRISPLVGYLLAGVLAGPFTPGFVAD-TKLAPEL-AELGVILLMFGVGLHFSLKDLMAV----KS   86 (558)
T ss_pred             HHHHHHHHHHHHHHHcCCCHHHHHHHHHHhhCccccccccc-hHHHHHH-HHHHHHHHHHHhHhcCCHHHHHHH----hh
Confidence            33455566667778888888888889998885421 11111 1234443 566666777788999998765311    11


Q ss_pred             HHHHHHHHHHhhhHHHHHHHHHhhCCChHHHHHHHHHhhhhhHHHHHHHHHhhcccccChhh
Q 038269          338 RFFFLIVISTAGKVVGTVICGLMLGFHWPESVSLGLLLSAKGHFYIFLAIMGAVHNYITHTT  399 (792)
Q Consensus       338 ~~~~li~~~~~~K~l~~~l~~~~~~~~~re~~~lg~~l~~kG~v~l~l~~~~~~~~~i~~~~  399 (792)
                      ......+...+.=++..+..++..++++.+++.+|..++.-..  .+++....|.|.++.+.
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~lg~~ls~tS~--~vv~~~L~e~~~l~s~~  146 (558)
T PRK10669         87 IAIPGAIAQIAVATLLGMALSAVLGWSLMTGIVFGLCLSTAST--VVLLRALEERQLIDSQR  146 (558)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH--HHHHHHHHhcCcccCcc
Confidence            1111111122222333344556778999999999987666222  34455555666655543

>TIGR00783 ccs citrate carrier protein, CCS family

Probab=95.35  E-value=0.82  Score=49.70  Aligned_cols=119  Identities=17%  Similarity=0.170  Sum_probs=75.3

Q ss_pred             CchhhHHHHHHhhhcCCCCcchHHHHHHHhHH---HHhhhhHHHHHhhccc-ccccccccccchhHHHHHHHHHHHHhhh
Q 038269          275 GYSPILSAFMAGIFFPSEGRMSKWTVGKVNYL---LSTLYYPIFFFWMGFH-AKLFTFEADTLGTWGRFFFLIVISTAGK  350 (792)
Q Consensus       275 G~~~~lgafvaGl~l~~~~~~~~~l~~kl~~~---~~~~~~PlfF~~~Gl~-~d~~~l~~~~~~~~~~~~~li~~~~~~K  350 (792)
                      ++|+..-..++|.++....-..+.++++...+   ...-+.+..++-+|+. +|++.+.  +.-+|. .+++++...++=
T Consensus       203 ~Ih~~v~mII~~vi~k~~gllp~~i~~~a~~~~~F~~~~lt~~ll~giGla~t~l~~L~--~a~t~~-~vviiv~~Vlg~  279 (347)
T TIGR00783       203 GIPAYAFMILIAAALKAFGLVPKEIEEGAKMLSQFISKNLTWPLMVGVGVSYIDLDDLV--AALSWQ-FVVICLSVVVAM  279 (347)
T ss_pred             cCCHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCHHHHH--HHhchh-HhhhHHHHHHHH
Confidence            67888888888888877655556666665543   2333444445555766 6775542  111233 344566667777


Q ss_pred             HHHHHHHHHhhCCChHHH-HHHHHHhhhh-hHHHHHHHHHhhcccccC
Q 038269          351 VVGTVICGLMLGFHWPES-VSLGLLLSAK-GHFYIFLAIMGAVHNYIT  396 (792)
Q Consensus       351 ~l~~~l~~~~~~~~~re~-~~lg~~l~~k-G~v~l~l~~~~~~~~~i~  396 (792)
                      .++.++.+++.|+-+-|+ +..|+.++.+ |.-++++.+.+...+++.
T Consensus       280 ii~s~lvGKllG~YPiE~aItagLC~~~~GGtGDvavLsAa~RM~Lmp  327 (347)
T TIGR00783       280 ILGGAFLGKLMGMYPVESAITAGLCNSGMGGTGDVAVLSASNRMNLIP  327 (347)
T ss_pred             HHHHHHHHHHhCCChHHHHHHHhhhccCCCCCCceeeeehhhhccccc
Confidence            888889999999755555 5556566555 667777777666666554

These proteins are members of the Citrate:Cation Symporter (CCS) Family (TC 2.A.24). These proteins have 12 GES predicted transmembrane regions. Most members of the CCS family catalyze citrate uptake with either Na+ or H+ as the cotransported cation. However, one member is specific for L-malate and probably functions by a proton symport mechanism.

>TIGR00841 bass bile acid transporter

Probab=95.16  E-value=4.4  Score=43.39  Aligned_cols=52  Identities=12%  Similarity=0.056  Sum_probs=32.9

Q ss_pred             HHHHHHHHHHHHHhhccChhhhhcCCcc--cchHhHH-HHH-HHHHHHHHHHHHhhc
Q 038269           87 IVEFGMICYMFVLGLEMDPYVIFKPPTR--DAIVAYG-GML-STFILGCSLTPFLHY  139 (792)
Q Consensus        87 l~~lgl~~llF~~Gle~d~~~l~~~~~~--~~~ia~~-~~l-~p~~~~~~~~~~l~~  139 (792)
                      +.-..+.+.||..|+.++.+++++..|+  ....+.. .++ .|.+. +.+..+++.
T Consensus         9 ~~~~~l~~~m~~~G~~l~~~~~~~~~~~p~~~~~~~~~~~vi~Plla-~~l~~~~~l   64 (286)
T TIGR00841         9 ILLILLFLIMFSMGCTLEFEDFKGHLRKPWGVIIGLLAQYGIMPLTG-FLLAKVFKL   64 (286)
T ss_pred             HHHHHHHHHHHHccCCCcHHHHHHHHhCchHHHHHHHHHHHHHHHHH-HHHHHHhCC
Confidence            3334478899999999999999876653  3333333 343 46544 555555543

Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria.

>PRK05326 potassium/proton antiporter; Reviewed

Probab=95.08  E-value=0.34  Score=57.16  Aligned_cols=118  Identities=17%  Similarity=0.235  Sum_probs=73.3

Q ss_pred             HHHHHHHHHHHHhhhhCchhhHHHHHHhhhcCCCCcchH--HHHHHHhHHHHhhhhHHHHHhhcccccccccccccchhH
Q 038269          259 LSLAFMVAVCSCSPFYGYSPILSAFMAGIFFPSEGRMSK--WTVGKVNYLLSTLYYPIFFFWMGFHAKLFTFEADTLGTW  336 (792)
Q Consensus       259 ~il~~~l~~~~~ae~~G~~~~lgafvaGl~l~~~~~~~~--~l~~kl~~~~~~~~~PlfF~~~Gl~~d~~~l~~~~~~~~  336 (792)
                      +++++..++..++..+|++.+++-.++|+++.....-.-  .-.+-.+ ....+.+++.....|+++|++.+.    ..+
T Consensus        13 ~ll~l~~~~~~l~~r~~~P~ll~~il~GillGp~~lg~i~~~~~~~~~-~i~~l~L~~iLF~~Gl~~~~~~l~----~~~   87 (562)
T PRK05326         13 LLLLLSILASRLSSRLGIPSLLLFLAIGMLAGEDGLGGIQFDNYPLAY-LVGNLALAVILFDGGLRTRWSSFR----PAL   87 (562)
T ss_pred             HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhCccccCCcccCcHHHHH-HHHHHHHHHHHHcCccCCCHHHHH----HHH
Confidence            334444455567777888888888888888875321100  0012233 347788899999999999987664    233


Q ss_pred             HHHHHHHHHHHhhhHHH-HHHHHHhhCCChHHHHHHHHHhhhhhHH
Q 038269          337 GRFFFLIVISTAGKVVG-TVICGLMLGFHWPESVSLGLLLSAKGHF  381 (792)
Q Consensus       337 ~~~~~li~~~~~~K~l~-~~l~~~~~~~~~re~~~lg~~l~~kG~v  381 (792)
                      ..+..+....++.-.+. .+...++.+++|.+++.+|..+++-...
T Consensus        88 ~~~~~la~~gv~~t~~~~g~~~~~l~g~~~~~alllgai~s~Td~a  133 (562)
T PRK05326         88 GPALSLATLGVLITAGLTGLFAHWLLGLDWLEGLLLGAIVGSTDAA  133 (562)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhhhhccCchH
Confidence            33333333333333333 3445567899999999999887765443

>TIGR00832 acr3 arsenical-resistance protein

Probab=95.01  E-value=6.8  Score=42.85  Aligned_cols=45  Identities=13%  Similarity=-0.060  Sum_probs=30.2

Q ss_pred             HHhhhHHHHHHHHHhhCCChHHHHHHHHHhhhh-hHHHHHHHHHhh
Q 038269          346 STAGKVVGTVICGLMLGFHWPESVSLGLLLSAK-GHFYIFLAIMGA  390 (792)
Q Consensus       346 ~~~~K~l~~~l~~~~~~~~~re~~~lg~~l~~k-G~v~l~l~~~~~  390 (792)
                      ..+.-+...+..++..|.+.+|+..+.+--+.| +...+.++....
T Consensus       255 ~~~~~~~lg~~~~r~~~l~~~~~~a~~~e~g~qN~~lai~lA~~~f  300 (328)
T TIGR00832       255 YFYIMFFLTFALAKKLGLPYSITAPAAFTGASNNFELAIAVAISLF  300 (328)
T ss_pred             HHHHHHHHHHHHHHHhCcChhhhhhheehhhhhhHHHHHHHHHHhC
Confidence            334445566677888999999998887766665 455555555433

The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.

>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]

Probab=94.98  E-value=0.64  Score=52.28  Aligned_cols=154  Identities=14%  Similarity=0.159  Sum_probs=89.6

Q ss_pred             HHHHHHHHHHHHHHhhhhCchhhHHHHHHhhhcCC-CC---cchHHHHHHHhHHHHhhhhHHHHHhhccccccccccccc
Q 038269          257 LVLSLAFMVAVCSCSPFYGYSPILSAFMAGIFFPS-EG---RMSKWTVGKVNYLLSTLYYPIFFFWMGFHAKLFTFEADT  332 (792)
Q Consensus       257 ~~~il~~~l~~~~~ae~~G~~~~lgafvaGl~l~~-~~---~~~~~l~~kl~~~~~~~~~PlfF~~~Gl~~d~~~l~~~~  332 (792)
                      +..+++.+.....+.+.+|+++++|=.++|+++.. +.   ...++..+-+.    ++=.-++...+|+.+|++.+....
T Consensus        11 ~~iiL~~a~i~~~l~~rl~lp~vlg~llaGiilGp~~~~~~~~~~~~i~~la----elGvi~LlF~~GLE~~~~~l~~~~   86 (397)
T COG0475          11 LLILLLVAVILGPLFKRLGLPPVLGYLLAGIILGPWGLLLIIESSEIIELLA----ELGVVFLLFLIGLEFDLERLKKVG   86 (397)
T ss_pred             HHHHHHHHHHHHHHHHHcCCchHHHHHHHHHhcCcccccccCCchHHHHHHH----HHhHHHHHHHHHHCcCHHHHHHhc
Confidence            44555666666789999999999999999999986 21   12233333333    333445566789999997764321


Q ss_pred             chhHHHHHHHHHHHHhhhHHHH--HHHHHhhCCChHHHHHHHHHhhhhhHHHHHHHHHhhcccccChhhHHHHHHHHHHH
Q 038269          333 LGTWGRFFFLIVISTAGKVVGT--VICGLMLGFHWPESVSLGLLLSAKGHFYIFLAIMGAVHNYITHTTAASLVIMIFFT  410 (792)
Q Consensus       333 ~~~~~~~~~li~~~~~~K~l~~--~l~~~~~~~~~re~~~lg~~l~~kG~v~l~l~~~~~~~~~i~~~~~~~lv~~~vl~  410 (792)
                       ..+  ......+.+..=++..  +... .+++++.+++.+|..+..-..  -+.+.+..|.|....+.-..++...++.
T Consensus        87 -~~~--~~~~~~~~~~~~~~l~~~~~~~-~~g~~~~~al~lg~~l~~sS~--~i~~~iL~e~~~~~~~~g~~~l~~~i~~  160 (397)
T COG0475          87 -RSV--GLGVAQVGLTAPFLLGLLLLLG-ILGLSLIAALFLGAALALSST--AIVLKILMELGLLKTREGQLILGALVFD  160 (397)
T ss_pred             -hhh--hhhHHHHHHHHHHHHHHHHHHH-HhccChHHHHHHHHHHHHHHH--HHHHHHHHHhccccchHHHHHHHHHHHH
Confidence             121  1122222222222222  2222 589999999999987755322  1334445566666666665555555555


Q ss_pred             HhhhhHHHHH
Q 038269          411 IVHTPFVVQN  420 (792)
Q Consensus       411 ~~~~~~li~~  420 (792)
                      =+.+-++...
T Consensus       161 Di~~i~lLai  170 (397)
T COG0475         161 DIAAILLLAI  170 (397)
T ss_pred             HHHHHHHHHH
Confidence            5544444433

>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins

Probab=94.88  E-value=0.53  Score=50.74  Aligned_cols=172  Identities=12%  Similarity=0.116  Sum_probs=102.3

Q ss_pred             HHHHHHHHHHHHhh----hhCchhhHHHHHHhhhcCC-CCcchHHHHHHHhHHHHhhhhHHHHHhhcccccccccccccc
Q 038269          259 LSLAFMVAVCSCSP----FYGYSPILSAFMAGIFFPS-EGRMSKWTVGKVNYLLSTLYYPIFFFWMGFHAKLFTFEADTL  333 (792)
Q Consensus       259 ~il~~~l~~~~~ae----~~G~~~~lgafvaGl~l~~-~~~~~~~l~~kl~~~~~~~~~PlfF~~~Gl~~d~~~l~~~~~  333 (792)
                      +.+++.....++++    ..++++.+=|.+.|+++.| .....+.+.+-++. ....++.+=-+..|.++++..+...+ 
T Consensus         5 l~~~ia~~a~~l~~~~~~~~~l~~~~~AillG~~i~n~~~~~~~~~~~Gi~~-~~k~~Lr~gIVLlG~~l~~~~i~~~G-   82 (305)
T PF03601_consen    5 LCFAIAILAYFLASLPFFLPGLGALLIAILLGMLIGNLFFGLPARFKPGIKF-SSKKLLRLGIVLLGFRLSFSDILALG-   82 (305)
T ss_pred             HHHHHHHHHHHHHhCcccccCccHHHHHHHHHHHHhhhccCCcHHHHhHHHH-HHHHHHHHHHHHHCccccHHHHHHhC-
Confidence            34444444555554    4677888889999999997 44445555555554 35678888889999999987664222 


Q ss_pred             hhHHHHHHHHHHHHhhhHHHHHHHH-HhhCCChHHHHHHHHHhhhhhHHHHHHHHHhhcccccChhh--HHHHHHHHHHH
Q 038269          334 GTWGRFFFLIVISTAGKVVGTVICG-LMLGFHWPESVSLGLLLSAKGHFYIFLAIMGAVHNYITHTT--AASLVIMIFFT  410 (792)
Q Consensus       334 ~~~~~~~~li~~~~~~K~l~~~l~~-~~~~~~~re~~~lg~~l~~kG~v~l~l~~~~~~~~~i~~~~--~~~lv~~~vl~  410 (792)
                        +..++. .++....-+..++..+ +.+|++++.+..++...+.=|.-+++...-..+.+- ++..  .+.+.+.-.+.
T Consensus        83 --~~~~~~-~~~~v~~~~~~~~~lg~r~~~l~~~~~~Lia~GtsICG~SAi~A~a~~i~a~~-~~~a~ava~V~lfg~va  158 (305)
T PF03601_consen   83 --WKGLLI-IIIVVILTFLLTYWLGRRLFGLDRKLAILIAAGTSICGASAIAATAPVIKAKE-EDVAYAVATVFLFGTVA  158 (305)
T ss_pred             --ccHHHH-HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhcccchHHHHHHHcccccCCC-CceeeeehHHHHHHHHH
Confidence              212222 2233333344444445 999999999999998877777766666554444331 1111  22333334455


Q ss_pred             HhhhhHHHHHhhhhhcccCccccccc
Q 038269          411 IVHTPFVVQNIIGRARKHAPTKRMAL  436 (792)
Q Consensus       411 ~~~~~~li~~l~~~~~~~~~~~~r~i  436 (792)
                      .++-|.+.+++.-....+--+---++
T Consensus       159 m~~~P~l~~~l~l~~~~~G~w~G~sI  184 (305)
T PF03601_consen  159 MFLYPLLGHALGLSPQQFGAWAGGSI  184 (305)
T ss_pred             HHHHHHHHHHhCCCHHHHHHHhhhhh
Confidence            56677777776555444433333333

; GO: 0016021 integral to membrane

>COG2855 Predicted membrane protein [Function unknown]

Probab=94.81  E-value=0.27  Score=52.76  Aligned_cols=116  Identities=16%  Similarity=0.126  Sum_probs=81.5

Q ss_pred             HhhhhCchhhHHHHHHhhhcCCCCcchHHHHHHHhHHHHhhhhHHHHHhhcccccccccccccchhHHHHHHHHHHHHhh
Q 038269          270 CSPFYGYSPILSAFMAGIFFPSEGRMSKWTVGKVNYLLSTLYYPIFFFWMGFHAKLFTFEADTLGTWGRFFFLIVISTAG  349 (792)
Q Consensus       270 ~ae~~G~~~~lgafvaGl~l~~~~~~~~~l~~kl~~~~~~~~~PlfF~~~Gl~~d~~~l~~~~~~~~~~~~~li~~~~~~  349 (792)
                      ..+..|+++.+=|.+.|+++....+.+.+...-++. ....++.+=.++.|++++++++...+..    .+.+.+..+..
T Consensus        31 ~~~~~~l~al~lAIllGi~l~~l~~~~~~~~~GI~f-s~k~LLr~gIvLlG~~ltl~~i~~~G~~----~v~~~~~~l~~  105 (334)
T COG2855          31 FSIHLGLSALTLAILLGILLGILPQIPAQTSAGITF-SSKKLLRLGIVLLGFRLTLSDIADVGGS----GVLIIAITLSS  105 (334)
T ss_pred             HhhhcCchHHHHHHHHHHHHhccccchhhhccchhh-hHHHHHHHHHHHHcceeeHHHHHHcCcc----HHHHHHHHHHH
Confidence            445566678888999999998655555555555554 3677888888999999998776422221    23344455556


Q ss_pred             hHHHHHHHHHhhCCChHHHHHHHHHhhhhhHHHHHHHHHhh
Q 038269          350 KVVGTVICGLMLGFHWPESVSLGLLLSAKGHFYIFLAIMGA  390 (792)
Q Consensus       350 K~l~~~l~~~~~~~~~re~~~lg~~l~~kG~v~l~l~~~~~  390 (792)
                      -++.++..++++|++++.+..+|..-+-=|.-+++...-..
T Consensus       106 t~~~~~~lg~~lgld~~~a~Lia~GssICGasAiaA~~pvi  146 (334)
T COG2855         106 TFLFAYFLGKLLGLDKKLALLIAAGSSICGASAIAATAPVI  146 (334)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHccchhhHHHHHHHhCCcC
Confidence            67777888889999999999999877777776666555433

>PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments

Probab=94.67  E-value=0.18  Score=50.46  Aligned_cols=127  Identities=13%  Similarity=0.324  Sum_probs=80.9

Q ss_pred             HHHHHHHhhccCccccccccccccHHHHHHHHHHHHHHHHHHHhhccCh-----hhhhcCCcccchHhHHHHHHHHHHHH
Q 038269           57 TSDIVIGLFLGNIQPIRNGFELEMIQTLNYIVEFGMICYMFVLGLEMDP-----YVIFKPPTRDAIVAYGGMLSTFILGC  131 (792)
Q Consensus        57 v~~IlaGillGp~~~~~~lf~~~~~~~l~~l~~lgl~~llF~~Gle~d~-----~~l~~~~~~~~~ia~~~~l~p~~~~~  131 (792)
                      ++.+++|+++|.....      + ....+...+..+.+++|.+|+++--     +.+|+.+++++.+.+..++-+++.+.
T Consensus         2 l~~li~Gi~lG~~~~~------~-~~~~~~~~~~~L~lLLF~VGi~lG~~~~~l~~l~~~g~~~Llipl~tIlGSllgg~   74 (191)
T PF03956_consen    2 LIALILGILLGYFLRP------P-FSLIDKISTYALYLLLFLVGIDLGSNREILRQLRSLGKRALLIPLATILGSLLGGL   74 (191)
T ss_pred             eeeHHHHHHHHHHhcc------c-ccccccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence            3456788888864332      1 1222677888899999999999843     45677888999999888888888888


Q ss_pred             HHHHHhhcccchhHHHHHHHHHHHhhccHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHH
Q 038269          132 SLTPFLHYSTHRKIVVAITLSFTLAGSGSHILTRVITNLKIGKSDIGKLGMAAGIHSDMITMLIICI  198 (792)
Q Consensus       132 ~~~~~l~~~~~~~~~~al~lg~~ls~Ts~~vv~~iL~el~ll~s~~g~l~l~~a~i~Di~~~~ll~i  198 (792)
                      +++.+++.+.    ..++.++.-+.=  +.....++.|++  +.+.|.++.=+=++-+++++++.-+
T Consensus        75 l~~~ll~~~~----~~~lav~sG~Gw--YSlsg~~i~~~~--~~~~G~iafl~n~~RE~~a~~~~P~  133 (191)
T PF03956_consen   75 LASLLLGLSL----KESLAVASGFGW--YSLSGVLITQLY--GPELGTIAFLSNLFREILAIILIPL  133 (191)
T ss_pred             HHHHHhcCCH----HHHHHHHccCcH--HHhHHHHHHhhh--CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8887775432    223333332222  222333344443  4577877766666666666655443

Some members have an additional pair of N-terminal transmembrane helices. The functions of the proteins in this family are unknown.

>PF06826 Asp-Al_Ex: Predicted Permease Membrane Region; InterPro: IPR006512 These sequences contain a domain that is duplicated in HI0035 of Haemophilus influenzae, in YidE and YbjL of Escherichia coli, and in a number of other putative transporters

Probab=94.38  E-value=0.88  Score=44.58  Aligned_cols=113  Identities=12%  Similarity=0.183  Sum_probs=76.1

Q ss_pred             cccCCChhHHHHHHHhhccCccccccccccccHHHHHHHHHHHHHHHHHHHhhccChhhh---hcCCcccchHhHHHHHH
Q 038269           49 KPMHQPRITSDIVIGLFLGNIQPIRNGFELEMIQTLNYIVEFGMICYMFVLGLEMDPYVI---FKPPTRDAIVAYGGMLS  125 (792)
Q Consensus        49 ~rl~~P~iv~~IlaGillGp~~~~~~lf~~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l---~~~~~~~~~ia~~~~l~  125 (792)
                      +++++-...+-+++|+++|...-....+  ......+.+.++|+.+|++.+|++--++.+   |+.+.+...+++.-.++
T Consensus        19 ~~~~LG~a~G~L~vgL~~G~~~~~~~~~--~~~~~~~~l~~~GL~lFl~~VGl~aG~~F~~~l~~~G~~~~~~~~~i~~~   96 (169)
T PF06826_consen   19 GGFSLGAAGGVLFVGLILGALGRTGPIF--LPISAPSFLRQLGLALFLAAVGLSAGPGFFSSLKRGGLKLLLLGVIITLV   96 (169)
T ss_pred             cceeccccHHHHHHHHHHHHhhhccCCC--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            5566666779999999999653221122  234566788999999999999999887655   45666666777777777


Q ss_pred             HHHHHHHHHH-HhhcccchhHHHHHHHHH-HHhhccHHHHHHHHHh
Q 038269          126 TFILGCSLTP-FLHYSTHRKIVVAITLSF-TLAGSGSHILTRVITN  169 (792)
Q Consensus       126 p~~~~~~~~~-~l~~~~~~~~~~al~lg~-~ls~Ts~~vv~~iL~e  169 (792)
                      |.++++.+.+ +++.+.      ....|. +=+.|++|.+....+.
T Consensus        97 ~~~~~~~~~~~~~~l~~------~~~~G~~aGa~T~tp~L~~A~~~  136 (169)
T PF06826_consen   97 PLLIALVIGRYLFKLNP------GIAAGILAGALTSTPALAAAQEA  136 (169)
T ss_pred             HHHHHHHHHHHHcCCCH------HHHHHHHHccccCcHHHHHHHHh
Confidence            8888887776 555432      223332 3345777777665554

Member proteins may have 0, 1, or 2 copies of the TrkA-C potassium uptake domain (IPR006037 from INTERPRO) between the duplications. The duplication appears distantly related to both the N- and the C-terminal domains the sodium/hydrogen exchanger family domain (IPR006153 from INTERPRO). The domain contains several apparent transmembrane regions and is proposed here to act in transport.

>TIGR00210 gltS sodium--glutamate symport carrier (gltS)

Probab=94.03  E-value=13  Score=41.78  Aligned_cols=141  Identities=10%  Similarity=0.166  Sum_probs=73.4

Q ss_pred             hCchhhHHHHHHhhhcCCCCcch--HHHHHHHhHHHHhhhhHHHHHhhcccccccccccccchhHHHHHHHHHHHHhhhH
Q 038269          274 YGYSPILSAFMAGIFFPSEGRMS--KWTVGKVNYLLSTLYYPIFFFWMGFHAKLFTFEADTLGTWGRFFFLIVISTAGKV  351 (792)
Q Consensus       274 ~G~~~~lgafvaGl~l~~~~~~~--~~l~~kl~~~~~~~~~PlfF~~~Gl~~d~~~l~~~~~~~~~~~~~li~~~~~~K~  351 (792)
                      +.++...+|++.|+++.+.-+..  .++.++..+...++.+-+|.+..=+.+++..+.    +.+..++++++..++.-.
T Consensus       243 ~~lP~fv~am~~giiirni~~~~~~~~~~~~~i~~I~~~sLdlfl~~AlmsL~L~~l~----~~a~Plliil~~q~i~~~  318 (398)
T TIGR00210       243 LMLPTFVWCLFVGVILRNPLSFKKFPWVAERAVSVIGNVSLSLFLAIALMSLQLWELA----DLAGPIALILLVQVMFMA  318 (398)
T ss_pred             CCCCchHHHHHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHHHHHHHhCcHHHHH----HHHHHHHHHHHHHHHHHH
Confidence            34677899999999988742211  112233333345666666666666777775552    345555555555544444


Q ss_pred             -HHHHHHHHhhCCChHHHHHHHHHhhh--hhHHHHHHHHHh---hcccccChhhHHHH-HHHHHHHHhhhhHHHHH
Q 038269          352 -VGTVICGLMLGFHWPESVSLGLLLSA--KGHFYIFLAIMG---AVHNYITHTTAASL-VIMIFFTIVHTPFVVQN  420 (792)
Q Consensus       352 -l~~~l~~~~~~~~~re~~~lg~~l~~--kG~v~l~l~~~~---~~~~~i~~~~~~~l-v~~~vl~~~~~~~li~~  420 (792)
                       ...++.-|..|-+ .|+-.++....-  -|...-++++.-   .++|. +++.|-++ +....+.-++-++++..
T Consensus       319 l~~~fv~fr~mg~~-ydaaV~~ag~~G~~lGatptaianm~av~~~yg~-s~~af~ivPlvgaf~id~~n~~~i~~  392 (398)
T TIGR00210       319 LYAIFVTFRLMGKD-YDAAVLCAGHCGFGLGATPTAIANMQAVTERFGP-SHQAFIVVPLVGAFFIDIINALVIKQ  392 (398)
T ss_pred             HHHHHHhHHhccch-HHHHHHhcccccccccchHHHHHHHHHHHhccCC-CCcceehhhhHHHHHHHHhhHHHHHH
Confidence             3345556667766 677664332222  244555555431   23343 55555443 33334434444444443

>PRK03818 putative transporter; Validated

Probab=93.75  E-value=1.1  Score=52.62  Aligned_cols=129  Identities=19%  Similarity=0.232  Sum_probs=79.0

Q ss_pred             HHHHHHHHHHHHHHHHhH-cccCCChhHHHHHHHhhccCcccccccccc-ccHHHHHHHHHHHHHHHHHHHhhccChhhh
Q 038269           31 IVGLLLAYVLTNLAHHLL-KPMHQPRITSDIVIGLFLGNIQPIRNGFEL-EMIQTLNYIVEFGMICYMFVLGLEMDPYVI  108 (792)
Q Consensus        31 l~~i~lil~~~~~~~~l~-~rl~~P~iv~~IlaGillGp~~~~~~lf~~-~~~~~l~~l~~lgl~~llF~~Gle~d~~~l  108 (792)
                      ++-+++.+.+..+++.+- +.+++- +.|-+++|+++|.....   +.. -.......+.++|+.+|+|.+|++.-+..+
T Consensus         8 ~~~l~l~i~lG~~lG~i~i~g~~LG-~~g~L~~gl~~G~~~~~---~~~~~~~~~~~~~~~~gl~lFv~~vGl~~Gp~f~   83 (552)
T PRK03818          8 VSILALVAVVGLWIGNIKIRGVGLG-IGGVLFGGIIVGHFVSQ---FGLTLDSDMLHFIQEFGLILFVYTIGIQVGPGFF   83 (552)
T ss_pred             HHHHHHHHHHHHhhcceEECCCccc-cHHHHHHHHHHhccccc---cCcccChHHHHHHHHHHHHHHHHHHhhcccHHHH
Confidence            333344444444444321 223333 48889999999973211   111 134566778999999999999999988766


Q ss_pred             ---hcCCcccchHhHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHH-HHHhhccHHHHHHHHHh
Q 038269          109 ---FKPPTRDAIVAYGGMLSTFILGCSLTPFLHYSTHRKIVVAITLS-FTLAGSGSHILTRVITN  169 (792)
Q Consensus       109 ---~~~~~~~~~ia~~~~l~p~~~~~~~~~~l~~~~~~~~~~al~lg-~~ls~Ts~~vv~~iL~e  169 (792)
                         |+.+.+...+++.-.+++.++++++.++++.+.      ....| .+=+.|++|.+......
T Consensus        84 ~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~G~~aGa~T~tp~l~aa~~~  142 (552)
T PRK03818         84 SSLRKSGLRLNLFAVLIVILGGLVTAILHKLFGIPL------PVMLGIFSGAVTNTPALGAGQQI  142 (552)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCCH------HHHHHHhhccccccHHHHHHHHH
Confidence               455556666777777777888777777776532      12233 23345666666665543

>PRK12652 putative monovalent cation/H+ antiporter subunit E; Reviewed

Probab=93.71  E-value=1  Score=49.62  Aligned_cols=131  Identities=16%  Similarity=0.167  Sum_probs=79.2

Q ss_pred             ceEEEEecCCCChhhHHHHHHHhcCCCCCCceEEEEEEeeecccchhhhhcccCccccccchhhhhhhhHHHHHHHHHhh
Q 038269          445 LQILLCLHGSQNITSTLNFLEISRGTANPGVAVYVTDMIELTDQIAATLVQNEGIDTVTVTDKAVMEMREEITTAVQSYV  524 (792)
Q Consensus       445 lrILvcv~~~~~~~~li~l~~~~~~~~~sp~~v~~lhLvel~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~  524 (792)
                      .|||+++...++....++-+-.++...+...+++++|+++......      .   .    + ...+..+++++..+...
T Consensus         6 kkILVavDGSe~S~~Al~~AielA~~~g~~AeL~lL~Vv~~~~~~~------~---~----~-~~~~~~eelle~~~~~~   71 (357)
T PRK12652          6 NRLLVPVADSVTVRQTVAYAVESAEEAAETPTVHLVAAASGRAVDP------E---G----Q-DELAAAEELLERVEVWA   71 (357)
T ss_pred             CeEEEEeCCCHHHHHHHHHHHHHHHhcCCCCEEEEEEEecCccccc------c---h----h-HHHHHHHHHHHHHHHHH
Confidence            3799999999988888888877774421246899999988422100      0   0    0 01112334444444433


Q ss_pred             hc----cCcceEEEEeEeec-C----CCChhHHHHHHHhhcCCcEEEecCCCCccCCCccccCCcchhHHHHHHhhhCCC
Q 038269          525 DE----NGGGITLKRMLALS-T----FSGMPQDICILAEDLMVSLIILPFHKRQLEDGTLDEGHPGFRYVNRKLLRNATC  595 (792)
Q Consensus       525 ~~----~~~~v~v~~~t~vs-~----~~~m~~dI~~~a~e~~~~liilp~h~~~~~~g~~~~~~~~~~~~n~~vl~~apC  595 (792)
                      +.    ...++.+++..... .    .-+.++.|++.|+|.++|+|+|+=..+.  .|+    .+..|.+- .=|.++-|
T Consensus        72 ~~~l~~~~~gV~ve~~vv~~~~~~~~~G~pae~Iv~~Aee~~aDLIVm~~~~~~--~~~----~~~~~~~~-~~~~~~~~  144 (357)
T PRK12652         72 TEDLGDDASSVTIETALLGTDEYLFGPGDYAEVLIAYAEEHGIDRVVLDPEYNP--GGT----APMLQPLE-RELARAGI  144 (357)
T ss_pred             HHhhhcccCCCceEEEEEeccccccCCCCHHHHHHHHHHHcCCCEEEECCCCCC--CCC----CcccchHH-HHHHhcCC
Confidence            21    12468888666552 1    1588999999999999999999955332  222    23345444 33455555


Q ss_pred             c
Q 038269          596 S  596 (792)
Q Consensus       596 s  596 (792)
                      +
T Consensus       145 ~  145 (357)
T PRK12652        145 T  145 (357)
T ss_pred             c
Confidence            5

>TIGR00844 c_cpa1 na(+)/h(+) antiporter

Probab=93.66  E-value=1.3  Score=53.38  Aligned_cols=71  Identities=14%  Similarity=0.209  Sum_probs=50.1

Q ss_pred             HHhhhhHHHHHhhcccccccccccccchhHHHHHHHHHHHHhhhHHHHHHHHHh--hCCChHHHHHHHHHhhhhhHH
Q 038269          307 LSTLYYPIFFFWMGFHAKLFTFEADTLGTWGRFFFLIVISTAGKVVGTVICGLM--LGFHWPESVSLGLLLSAKGHF  381 (792)
Q Consensus       307 ~~~~~~PlfF~~~Gl~~d~~~l~~~~~~~~~~~~~li~~~~~~K~l~~~l~~~~--~~~~~re~~~lg~~l~~kG~v  381 (792)
                      +..+.+++-....|++++...+.    ..|..+..+++.+...-++.+.+.+++  .+++|..++.+|.++.+-.-+
T Consensus        74 IteIvL~I~LFa~Gl~L~~~~Lr----r~wrsV~rLl~~~M~lT~livAL~a~~Li~GL~~~~ALLLGAILAPTDPV  146 (810)
T TIGR00844        74 ISRILLCLQVFAVSVELPRKYML----KHWVSVTMLLVPVMTSGWLVIALFVWILVPGLNFPASLLMGACITATDPV  146 (810)
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHH----HhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhhcCCcHH
Confidence            36677788888899999987653    345555555555555555555555543  599999999999999987754

This model is specific for the fungal members of this family.

>PLN03159 cation/H(+) antiporter 15; Provisional

Probab=93.21  E-value=1.5  Score=54.20  Aligned_cols=126  Identities=16%  Similarity=0.176  Sum_probs=61.2

Q ss_pred             HHHHhHcccCCChhHHHHHHHhhccCccccccccccccHHHHHHH-HHHHHHHHHHHHhhccChhhhhcCCcccc--hHh
Q 038269           43 LAHHLLKPMHQPRITSDIVIGLFLGNIQPIRNGFELEMIQTLNYI-VEFGMICYMFVLGLEMDPYVIFKPPTRDA--IVA  119 (792)
Q Consensus        43 ~~~~l~~rl~~P~iv~~IlaGillGp~~~~~~lf~~~~~~~l~~l-~~lgl~~llF~~Gle~d~~~l~~~~~~~~--~ia  119 (792)
                      +..++.+.+|+..++|-.++|+++......+     .-.+-++.+ ..+-+-+|...+|+++|+..+.......+  .+.
T Consensus       283 ~~a~lae~~Gl~~ilGAFlaGl~lp~~~~~~-----~l~ekle~~~~~lflPlFFv~vGl~idl~~l~~~~~~~~~~~li  357 (832)
T PLN03159        283 ISGFITDAIGTHSVFGAFVFGLVIPNGPLGV-----TLIEKLEDFVSGLLLPLFFAISGLKTNVTKIQGPATWGLLVLVI  357 (832)
T ss_pred             HHHHHHHHhCccHHHHHHHHhhccCCcchHH-----HHHHHHHHHHHHHHHHHHHHHhhheeeHHHhcCchHHHHHHHHH
Confidence            3445556666666666666666665321110     112233333 33444566677899999988843211111  111


Q ss_pred             HHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHhhccHH--HHHHHHHhcCCCCCch
Q 038269          120 YGGMLSTFILGCSLTPFLHYSTHRKIVVAITLSFTLAGSGSH--ILTRVITNLKIGKSDI  177 (792)
Q Consensus       120 ~~~~l~p~~~~~~~~~~l~~~~~~~~~~al~lg~~ls~Ts~~--vv~~iL~el~ll~s~~  177 (792)
                      +.+++.=++.+++.+++++++    +..++.+|..++.-...  +++.+-.+.|.++.+.
T Consensus       358 v~a~~gK~~g~~l~a~~~g~~----~~eal~lG~lm~~kG~~~Lii~~ig~~~gvi~~~~  413 (832)
T PLN03159        358 IMASAGKIMGTIIIAFFYTMP----FREGITLGFLMNTKGLVEMIVLNVGRDQEVLDDES  413 (832)
T ss_pred             HHHHHHHHHHHHHHHHHhCCC----HHHHHHHHHHHhcccHHHHHHHHHHHhcCccCchh
Confidence            111111122223334444433    34477888888774322  2444445566655443

>TIGR00698 conserved hypothetical integral membrane protein

Probab=92.61  E-value=2.8  Score=45.74  Aligned_cols=141  Identities=13%  Similarity=-0.020  Sum_probs=81.0

Q ss_pred             hCchhhHHHHHHhhhcCCCC--cchHHHHHHHhHHHHhhhhHHHHHhhcccccccccccccchhHHHHHHHHHHHHhhhH
Q 038269          274 YGYSPILSAFMAGIFFPSEG--RMSKWTVGKVNYLLSTLYYPIFFFWMGFHAKLFTFEADTLGTWGRFFFLIVISTAGKV  351 (792)
Q Consensus       274 ~G~~~~lgafvaGl~l~~~~--~~~~~l~~kl~~~~~~~~~PlfF~~~Gl~~d~~~l~~~~~~~~~~~~~li~~~~~~K~  351 (792)
                      .++++.+=|.+.|+++.+..  +..+....-++ +....++-+=-+..|+++++.++...+   + ..+.+.+.....-+
T Consensus        29 ~~l~~~~~AillG~~l~n~~~~~~~~~~~~Gi~-f~~k~lLr~gIVLlG~~l~~~~i~~~G---~-~~l~~~~~~v~~~~  103 (335)
T TIGR00698        29 PALSALFLAILLGMVAGNTIYPQRDEEKKRGVL-FAKPFLLRIGITLYGFRLTFPYIADVG---P-NEIVADTLILTSTF  103 (335)
T ss_pred             CCCcHHHHHHHHHHHHhccccccchhhccchHH-HHHHHHHHHHHHHHCccccHHHHHHhh---H-HHHHHHHHHHHHHH
Confidence            46777888889999988732  22222222233 335566677778899999987663221   1 12222233333334


Q ss_pred             HH-HHHHHHhhCCChHHHHHHHHHhhhhhHHHHHHHHHhhcccccChhh---HHHHHHHHHHHHhhhhHHHHHh
Q 038269          352 VG-TVICGLMLGFHWPESVSLGLLLSAKGHFYIFLAIMGAVHNYITHTT---AASLVIMIFFTIVHTPFVVQNI  421 (792)
Q Consensus       352 l~-~~l~~~~~~~~~re~~~lg~~l~~kG~v~l~l~~~~~~~~~i~~~~---~~~lv~~~vl~~~~~~~li~~l  421 (792)
                      .. .++..|.+|++++.+..++...+-=|.-+++...-..+.+  +++.   -+.+++.-.+..++-|++.+++
T Consensus       104 ~~~~~~g~k~l~l~~~~~~Lia~GtsICGaSAi~A~a~~i~A~--~~~~a~ava~V~lfgt~am~l~P~l~~~l  175 (335)
T TIGR00698       104 FLTVFLGSSRLKLDKQMSILLGAGSSICGAAAVAAIEPVIKAE--KEKVSVAIAIVVIFGTTGIFLYPSIYHYA  175 (335)
T ss_pred             HHHHHHHHHHhCCChhHHHHHHcchhHHHHHHHHHhccccCCC--ccceeeeehHHHHHHHHHHHHHHHHHHHH
Confidence            44 4444588999999999998877776776666554443332  1221   2222333344455667766654

Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa.

>PF01758 SBF: Sodium Bile acid symporter family; InterPro: IPR002657 This family of proteins are found both in prokaryotes and eukaryotes

Probab=92.54  E-value=2.7  Score=41.91  Aligned_cols=106  Identities=17%  Similarity=0.260  Sum_probs=51.3

Q ss_pred             HHHHHHHHHHhhccChhhhhcCCcccch--HhH-HHHHHHHHHHHHHH-HHhhcccchhHHHHHHHHHHHhhccHHHHHH
Q 038269           90 FGMICYMFVLGLEMDPYVIFKPPTRDAI--VAY-GGMLSTFILGCSLT-PFLHYSTHRKIVVAITLSFTLAGSGSHILTR  165 (792)
Q Consensus        90 lgl~~llF~~Gle~d~~~l~~~~~~~~~--ia~-~~~l~p~~~~~~~~-~~l~~~~~~~~~~al~lg~~ls~Ts~~vv~~  165 (792)
                      +.+.+.||..|+++|++++++..|+...  .++ ..+++.-.+++++. .++..+  .....++++. ..++.+  ..+.
T Consensus         2 i~l~~~mf~~gl~~~~~~l~~~~~~p~~l~~~l~~~~~i~Plla~~l~~~~~~~~--~~~~~Gl~l~-~~~P~~--~~s~   76 (187)
T PF01758_consen    2 ILLFLMMFSMGLSLTFEDLRRVLRRPKLLLIGLLAQFLIMPLLAFGLAWLLLPLS--PALALGLLLV-AACPGG--PASN   76 (187)
T ss_dssp             -HHHHHHHHHHHC--GGGGHHHHHSHHHHHHHHHHHHHHHHHHHHHHH-HHTT----HHHHHHHHHH-HHS-B---THHH
T ss_pred             hhhhHHHHHhhhcccHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--HHHHHHHHHH-hcCCcH--HHHH
Confidence            4567899999999999999977665432  222 33444333444554 444322  2222222222 222222  2334


Q ss_pred             HHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 038269          166 VITNLKIGKSDIGKLGMAAGIHSDMITMLIICIGAVFV  203 (792)
Q Consensus       166 iL~el~ll~s~~g~l~l~~a~i~Di~~~~ll~i~~~~~  203 (792)
                      ....+.  +.+. .++.+...++.+.+.+..-+...+.
T Consensus        77 ~~t~l~--~Gd~-~ls~~lt~istll~~~~~P~~~~l~  111 (187)
T PF01758_consen   77 VFTYLA--GGDV-ALSVSLTLISTLLAPFLMPLLLYLL  111 (187)
T ss_dssp             HHHHHT--T--H-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHh--CCCc-ccccceeeHHHHHHHHHHHHHHHHH
Confidence            444432  2232 3566667777777776665554443

They are related to the human bile acid:sodium symporters, which are transmembrane proteins functioning in the liver in the uptake of bile acids from portal blood plasma, a process mediated by the co-transport of Na+ []. In yeast, overexpression of the ACR3 gene confers an arsenite- but not an arsenate-resistance phenotype [].; GO: 0008508 bile acid:sodium symporter activity, 0006814 sodium ion transport, 0016020 membrane; PDB: 3ZUX_A 3ZUY_A.

>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate

Probab=92.35  E-value=1.6  Score=48.57  Aligned_cols=118  Identities=13%  Similarity=0.037  Sum_probs=64.9

Q ss_pred             HhhhhHHHHHhhcccccccccccccchhHHHHHHHHHHHHhhhHHHHHHHHHhhCCChHHHHHHHHHhhhhhHH-HHHHH
Q 038269          308 STLYYPIFFFWMGFHAKLFTFEADTLGTWGRFFFLIVISTAGKVVGTVICGLMLGFHWPESVSLGLLLSAKGHF-YIFLA  386 (792)
Q Consensus       308 ~~~~~PlfF~~~Gl~~d~~~l~~~~~~~~~~~~~li~~~~~~K~l~~~l~~~~~~~~~re~~~lg~~l~~kG~v-~l~l~  386 (792)
                      .++++-.||..+|+..++..+.. .+........+.........+.....+.+++.++.-.+..|..--..|+= +.++.
T Consensus        66 ~~~lm~~fF~~igL~~~~~~lkk-gg~~~~~~~~~~~~~~~~Q~~vG~~la~l~gl~p~~Gll~Gsi~f~GGhGTAaa~g  144 (368)
T PF03616_consen   66 QDFLMIIFFTTIGLGASLKLLKK-GGKAVLIFLLIAIILAFLQNIVGLGLAKLLGLDPLFGLLAGSIGFTGGHGTAAAFG  144 (368)
T ss_pred             HHHHHHHHHHHHhhccchhhHHh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHhccccccCCccHHHHHH
Confidence            45677788999999998866542 22222222222333344565555566777888876665544211122332 23333


Q ss_pred             HHhhcc-cccChhhHHHHH--HHHHHHHhhhhHHHHHhhhhhc
Q 038269          387 IMGAVH-NYITHTTAASLV--IMIFFTIVHTPFVVQNIIGRAR  426 (792)
Q Consensus       387 ~~~~~~-~~i~~~~~~~lv--~~~vl~~~~~~~li~~l~~~~~  426 (792)
                      ....+. |.-+.....+-.  +..+.-.+++.|+++|+.|+.+
T Consensus       145 ~~fe~~~G~~~a~~vg~a~AT~Glv~G~liGgpi~~~lirk~~  187 (368)
T PF03616_consen  145 PTFEELYGWEGATSVGMAAATFGLVVGGLIGGPIANWLIRKGK  187 (368)
T ss_pred             HHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            444444 554444443333  3334456788899999877654

The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane

>COG0589 UspA Universal stress protein UspA and related nucleotide-binding proteins [Signal transduction mechanisms]

Probab=92.21  E-value=1.6  Score=41.12  Aligned_cols=143  Identities=20%  Similarity=0.192  Sum_probs=78.0

Q ss_pred             ceeEEEEec-cCcChHHHHHHHHHHhcCCCeEEEEEEeeecCCCCcccccccccC-CcchhhhhhhhhHHHHHHHHHhhc
Q 038269          618 SLNVAVIFI-GGKDDREALAYASRVARHPAVKLTVIRFLLDNSENPQRRAATYKD-NTAELEEEMKIDDECFAEFYERQV  695 (792)
Q Consensus       618 ~~~v~v~f~-GG~ddreAL~~a~rma~~~~v~ltv~r~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~~~l~e~~~~~~  695 (792)
                      ..++++++- |.+--++|++.+...+...+..+++..++................ .....+..+...++.+++.++...
T Consensus         5 ~~~il~~~d~~s~~~~~a~~~a~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (154)
T COG0589           5 YKKILVAVDVGSEAAEKALEEAVALAKRLGAPLILLVVIDPLEPTALVSVALADAPIPLSEEELEEEAEELLAEAKALAE   84 (154)
T ss_pred             cceEEEEeCCCCHHHHHHHHHHHHHHHhcCCeEEEEEEecccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            357888888 888899999999999999999998887765433211000000000 000011122334555555543221


Q ss_pred             CCCcEEEEEEecCChH---HHHHHHHhhhcCccEEEEecCCCCCcccccCCcccCCCCccchhhhhhhcCCCCCceeEEE
Q 038269          696 AEGHVAYAEKHLANSS---ETFATLRSLEGQYALIIVGRGERANSILTVGMNDWQQCPELGPIGDVLSGSDFLVRTSVLI  772 (792)
Q Consensus       696 ~~~~v~y~e~~v~~~~---e~~~~i~~~~~~~dL~iVGr~~~~~s~~~~gl~~w~e~~eLG~iGd~las~d~~~~~SvLv  772 (792)
                       ...+...+..+..|.   +.+....+ .++.||+++|.++.         +.|.+ =-||-+-+-++..   ++++|||
T Consensus        85 -~~~~~~~~~~~~~g~~~~~~i~~~a~-~~~adliV~G~~g~---------~~l~~-~llGsvs~~v~~~---~~~pVlv  149 (154)
T COG0589          85 -AAGVPVVETEVVEGSPSAEEILELAE-EEDADLIVVGSRGR---------SGLSR-LLLGSVAEKVLRH---APCPVLV  149 (154)
T ss_pred             -HcCCCeeEEEEecCCCcHHHHHHHHH-HhCCCEEEECCCCC---------ccccc-eeeehhHHHHHhc---CCCCEEE
Confidence             112221222222232   33332222 22699999999732         23333 3467777777764   7789999


Q ss_pred             Eee
Q 038269          773 IKQ  775 (792)
Q Consensus       773 vqq  775 (792)
                      |..
T Consensus       150 v~~  152 (154)
T COG0589         150 VRS  152 (154)
T ss_pred             Ecc
Confidence            874

>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form

Probab=91.94  E-value=1.5  Score=51.27  Aligned_cols=115  Identities=15%  Similarity=0.212  Sum_probs=68.8

Q ss_pred             HHHHHHHHHhhhhCchhhHHHHHHhhhcCCCCcchH-HHHHHHhHHHHhhhhHHHHHhhcccccccccccccchhHHHHH
Q 038269          262 AFMVAVCSCSPFYGYSPILSAFMAGIFFPSEGRMSK-WTVGKVNYLLSTLYYPIFFFWMGFHAKLFTFEADTLGTWGRFF  340 (792)
Q Consensus       262 ~~~l~~~~~ae~~G~~~~lgafvaGl~l~~~~~~~~-~l~~kl~~~~~~~~~PlfF~~~Gl~~d~~~l~~~~~~~~~~~~  340 (792)
                      +.+.....+++.+++++.++-+++|+++...+.... .+..   .+...+++|......|+++|...+.    ..+..+.
T Consensus         8 ~~~~~~~~l~~r~~lP~~v~lil~Gi~lg~~~~~~~~~~~~---~~~~~~~Lp~lLF~~g~~~~~~~l~----~~~~~i~   80 (525)
T TIGR00831         8 MLATAVAVTVKFIRLPYPIALILAGLLLGLAGLLPEVPLDR---EIVLFLFLPPLLFEAAMNTDLRELR----ENFRPIA   80 (525)
T ss_pred             HHHHHHHHHhcccCCCHHHHHHHHHHHHHhccccCCCCCCH---HHHHHHHHHHHHHHHHhcCCHHHHH----HHHHHHH
Confidence            334444556777777777777777777763111100 0111   1224578888888899999987664    2333333


Q ss_pred             HHHHHHHhhhH-HHHHHHHHhhCCChHHHHHHHHHhhhhhHHHH
Q 038269          341 FLIVISTAGKV-VGTVICGLMLGFHWPESVSLGLLLSAKGHFYI  383 (792)
Q Consensus       341 ~li~~~~~~K~-l~~~l~~~~~~~~~re~~~lg~~l~~kG~v~l  383 (792)
                      .+.+...+.-. +..+...+..++||..++.+|.++++-..+..
T Consensus        81 ~la~~~vlit~~~v~~~~~~~~~l~~~~alllGails~TDpvav  124 (525)
T TIGR00831        81 LIAFLLVVVTTVVVGFSLNWILGIPLALALILGAVLSPTDAVAV  124 (525)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHhCCCCHHHH
Confidence            33333333322 22333334679999999999999998776654

This model is specific for the bacterial members of this family.

>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter

Probab=91.24  E-value=1.6  Score=51.29  Aligned_cols=122  Identities=12%  Similarity=0.169  Sum_probs=71.9

Q ss_pred             HHHHHHHHHhHcc-----cCCChhHHHHHHHhhccCccccccccccccHHHHHHHHHHHHHHHHHHHhhccChhhhhcCC
Q 038269           38 YVLTNLAHHLLKP-----MHQPRITSDIVIGLFLGNIQPIRNGFELEMIQTLNYIVEFGMICYMFVLGLEMDPYVIFKPP  112 (792)
Q Consensus        38 l~~~~~~~~l~~r-----l~~P~iv~~IlaGillGp~~~~~~lf~~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l~~~~  112 (792)
                      ++++..+++++-|     +++-.+.+-+++|+++|..+..   +|       +.+.++|+.+|+|.+|++.-+..++.-.
T Consensus        15 lfl~i~lG~~lG~iki~~~~LG~~~gvLfvgl~~G~~g~~---i~-------~~v~~~gl~lFvy~vG~~~Gp~Ff~~l~   84 (562)
T TIGR03802        15 LFLSLALGYLIGKIKFGSFQLGGVAGSLIVAVLIGQLGIQ---ID-------PGVKAVFFALFIFAIGYEVGPQFFASLK   84 (562)
T ss_pred             HHHHHHHhHhhcceEEeeeecchHHHHHHHHHHHHhcCCC---CC-------hHHHHHHHHHHHHHhhhccCHHHHHHHH
Confidence            3344444555544     5576688999999999976542   22       1266799999999999999998876444


Q ss_pred             c---ccchHhHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHhhccHHHHHHHHHhcC
Q 038269          113 T---RDAIVAYGGMLSTFILGCSLTPFLHYSTHRKIVVAITLSFTLAGSGSHILTRVITNLK  171 (792)
Q Consensus       113 ~---~~~~ia~~~~l~p~~~~~~~~~~l~~~~~~~~~~al~lg~~ls~Ts~~vv~~iL~el~  171 (792)
                      |   +...+++.-.++.+++.+++.++++.+.  .....++-|+.-++.+.......+.+++
T Consensus        85 ~~g~~~~~~a~~~~~~~~~~~~~~~~~~g~~~--~~~~Gl~aGalT~tp~l~aA~~a~~~~~  144 (562)
T TIGR03802        85 KDGLREIILALVFAVSGLITVYALAKIFGLDK--GTAAGLAAGGLTQSAVIGTAGDAIEKLG  144 (562)
T ss_pred             hccHHHHHHHHHHHHHHHHHHHHHHHHhCCCH--HHHHHHHhchhhccHHHHHHHHHHHhcC
Confidence            4   4444444444445555666666666532  2233344443333333333333444444

All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).

>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter

Probab=90.47  E-value=1.7  Score=51.06  Aligned_cols=115  Identities=16%  Similarity=0.216  Sum_probs=75.0

Q ss_pred             ccCCChhHHHHHHHhhccCccccccccccccHHHHHHHHHHHHHHHHHHHhhccChhhh---hcCCcccchHhHHHHHHH
Q 038269           50 PMHQPRITSDIVIGLFLGNIQPIRNGFELEMIQTLNYIVEFGMICYMFVLGLEMDPYVI---FKPPTRDAIVAYGGMLST  126 (792)
Q Consensus        50 rl~~P~iv~~IlaGillGp~~~~~~lf~~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l---~~~~~~~~~ia~~~~l~p  126 (792)
                      ++.+-...+-+++|+++|..+.....+-.-.......+.++|+.+|++.+|++--++.+   ++.+.+...++..-.++|
T Consensus       412 p~~lg~~~g~l~~gl~~g~~~~~~~~~~~~p~~a~~~l~~~GL~lFla~vG~~aG~~f~~~l~~~G~~~~~~g~~~~~~~  491 (562)
T TIGR03802       412 PLTLGTGGGALISGLVFGWLRSKHPTFGNIPSSASWLLKDLGLALFIAVVGLSAGPQAVTAIKEMGLTLFLLGIVVTILP  491 (562)
T ss_pred             ceeehhhHHHHHHHHHHHHhcccCCcceecCHHHHHHHHHHhHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            34455567899999999975422112111234566778999999999999999887655   555556666666666677


Q ss_pred             HHHHHHHH-HHhhcccchhHHHHHHHH-HHHhhccHHHHHHHHHhc
Q 038269          127 FILGCSLT-PFLHYSTHRKIVVAITLS-FTLAGSGSHILTRVITNL  170 (792)
Q Consensus       127 ~~~~~~~~-~~l~~~~~~~~~~al~lg-~~ls~Ts~~vv~~iL~el  170 (792)
                      .++++.+. ++++.+.      ...+| ++=+.|++|.+.......
T Consensus       492 ~~~~~~~~~~~~~~~~------~~~~G~~aG~~t~t~~l~~a~~~~  531 (562)
T TIGR03802       492 LIITMLIGKYVLKYDP------ALLLGALAGARTATPALGAVLERA  531 (562)
T ss_pred             HHHHHHHHHHHhCCCH------HHHHHHhhccCCCcHHHHHHHHhc
Confidence            77777776 4565432      23444 344668888777665543

All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).

>TIGR01625 YidE_YbjL_dupl AspT/YidE/YbjL antiporter duplication domain

Probab=90.36  E-value=2.4  Score=40.83  Aligned_cols=113  Identities=16%  Similarity=0.140  Sum_probs=65.0

Q ss_pred             CChhHHHHHHHhhccCccccccccccccHHHHHHHHHHHHHHHHHHHhhccChhhhh---cCC-cccchHhHHHHHHHHH
Q 038269           53 QPRITSDIVIGLFLGNIQPIRNGFELEMIQTLNYIVEFGMICYMFVLGLEMDPYVIF---KPP-TRDAIVAYGGMLSTFI  128 (792)
Q Consensus        53 ~P~iv~~IlaGillGp~~~~~~lf~~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l~---~~~-~~~~~ia~~~~l~p~~  128 (792)
                      +-...+-+++|+++|.......++-.-.......+.++|+.+|++.+|++--++.+.   +.+ -....++..-.++|.+
T Consensus        21 LG~~~G~L~vgL~~G~~~~~~p~~~~~p~~~~~~l~~~GL~lFl~~vGl~aG~~f~~~l~~~gg~~~~~~g~~v~~~~~~  100 (154)
T TIGR01625        21 LGNAGGVLFVGLLLGHFGATGPLTWYIPFSANLFIREFGLMLFLYGVGLSAGPGFFSSLKDGGGLLRINGGALITVVPTL  100 (154)
T ss_pred             ecccHHHHHHHHHHHhccccCCcceecChhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHH
Confidence            333678899999999754322122111234667788999999999999999887664   333 1122233333334444


Q ss_pred             HHHHHH-HHhhcccchhHHHHHHHHH-HHhhccHHHHHHHHHhcC
Q 038269          129 LGCSLT-PFLHYSTHRKIVVAITLSF-TLAGSGSHILTRVITNLK  171 (792)
Q Consensus       129 ~~~~~~-~~l~~~~~~~~~~al~lg~-~ls~Ts~~vv~~iL~el~  171 (792)
                      ++..+. ++++.+.      ....|+ +=+.|++|.+....+..+
T Consensus       101 ~~~~~~~~~~~~~~------~~~~G~~aGa~T~tpaL~aa~~~~~  139 (154)
T TIGR01625       101 LVAVALIKLLRINY------ALTAGMLAGATTNTPALDAANDTLR  139 (154)
T ss_pred             HHHHHHHHHhCCCH------HHHHHHHhccccChHHHHHHHHHhc
Confidence            444433 4454332      233343 345677777776665443

This model represents a domain that is duplicated the aspartate-alanine antiporter AspT, as well as HI0035 of Haemophilus influenzae, YidE and YbjL of E. coli, and a number of other known or putative transporters. Member proteins may have 0, 1, or 2 copies of TrkA potassium uptake domain pfam02080 between the duplications. The domain contains several apparent transmembrane regions and is proposed here to act in transport.

>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication

Probab=90.08  E-value=4.8  Score=38.92  Aligned_cols=120  Identities=13%  Similarity=0.040  Sum_probs=72.3

Q ss_pred             HHHHHHHHhhhhCch--hhHHHHHHhhhcCCCCcchHHHHHHHhHHHHhhhhHHHHHhhcccccccccccccchhHHHHH
Q 038269          263 FMVAVCSCSPFYGYS--PILSAFMAGIFFPSEGRMSKWTVGKVNYLLSTLYYPIFFFWMGFHAKLFTFEADTLGTWGRFF  340 (792)
Q Consensus       263 ~~l~~~~~ae~~G~~--~~lgafvaGl~l~~~~~~~~~l~~kl~~~~~~~~~PlfF~~~Gl~~d~~~l~~~~~~~~~~~~  340 (792)
                      .....+++.+.+|+.  .++|+.+++.++.-.....-.+-+.+.    .+-.-+.=..+|.+++...+.. -.+.+...+
T Consensus         6 ~~~~~g~l~~~l~~Pa~~llG~mi~~~~~~~~~~~~~~~P~~~~----~~~qviiG~~iG~~f~~~~l~~-~~~~~~~~l   80 (156)
T TIGR03082         6 VGLAGGLLASLLGLPAAWLLGPLLAGAVLSLAGGLEITLPPWLL----ALAQVVIGILIGSRFTREVLAE-LKRLWPAAL   80 (156)
T ss_pred             HHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhcCCccCCCCHHHH----HHHHHHHHHHHHccCCHHHHHH-HHHHHHHHH
Confidence            344455666777775  678888877776642211111111222    2223334467888888655431 123444455


Q ss_pred             HHHHHHHhhhHHHHHHHHHhhCCChHHHHHHHHHhhhhhHHHHHHHHHhh
Q 038269          341 FLIVISTAGKVVGTVICGLMLGFHWPESVSLGLLLSAKGHFYIFLAIMGA  390 (792)
Q Consensus       341 ~li~~~~~~K~l~~~l~~~~~~~~~re~~~lg~~l~~kG~v~l~l~~~~~  390 (792)
                      ...+..++.-++..++..+..++++.+++ ++  ..|-|.-++.+.....
T Consensus        81 ~~~~~~l~~~~~~~~~l~~~~~~~~~ta~-La--~~PGGl~~m~~~A~~~  127 (156)
T TIGR03082        81 LSTVLLLALSALLAWLLARLTGVDPLTAF-LA--TSPGGASEMAALAAEL  127 (156)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCHHHHH-HH--hCCchHHHHHHHHHHh
Confidence            55566666677778888899999999885 33  4688888887766544

The model describes a hydrophobic sequence region that is duplicated to form the AbrB protein of Escherichia coli (not to be confused with a Bacillus subtilis protein with the same gene symbol). In some species, notably the Cyanobacteria and Thermus thermophilus, proteins consist of a single copy rather than two copies. The member from Pseudomonas putida, PP_1415, was suggested to be an ammonia monooxygenase characteristic of heterotrophic nitrifiers, based on an experimental indication of such activity in the organism and a glimmer of local sequence similarity between parts of P. putida protein and an instance of the AmoA protein from Nitrosomonas europaea (PubMed:9732537); we do not believe the sequence similarity to be meaningful. The member from E. coli (b0715, ybgN) appears to be the largely uncharacterized AbrB (aidB regulator) protein of E. coli cited in Volkert, et al. (PubMed 8002588), although we did not manage to tra

>COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism]

Probab=87.76  E-value=15  Score=40.55  Aligned_cols=119  Identities=13%  Similarity=0.001  Sum_probs=67.9

Q ss_pred             HHhhhhHHHHHhhcccccccccccccchhHHHHHHHHHHHHhhhHHHHHHHHHhhCCChHHHHHHHHHhhhhhHH-HHHH
Q 038269          307 LSTLYYPIFFFWMGFHAKLFTFEADTLGTWGRFFFLIVISTAGKVVGTVICGLMLGFHWPESVSLGLLLSAKGHF-YIFL  385 (792)
Q Consensus       307 ~~~~~~PlfF~~~Gl~~d~~~l~~~~~~~~~~~~~li~~~~~~K~l~~~l~~~~~~~~~re~~~lg~~l~~kG~v-~l~l  385 (792)
                      ..+.|+-.||..+|+..++..+... +..............+..-......+.+.+.+..-++..|-+--.-|+- +.+.
T Consensus        67 l~~~fmliFFttiglsa~~~~lkkg-Gk~l~if~~~a~~l~~~Qn~igi~la~~lgidpl~gllagsIsl~GGHGtaAA~  145 (404)
T COG0786          67 LQDVFMLIFFATIGLSASFKLLKKG-GKKLAIFLATAAGLAVLQNFIGIGLAKLLGLDPLIGLLAGSISLVGGHGTAAAW  145 (404)
T ss_pred             cccHHHHHHHHHhccccchhHHHhc-ChhHHHHHHHHHHHHHHHHHHHHHHHHHcCccHHHHHHhcceeecCCCchHHHH
Confidence            3678899999999999999776533 2222222222222233344444455677788776666553322222332 3445


Q ss_pred             HHHhhcccccChhhHHH--HHHHHHHHHhhhhHHHHHhhhhhc
Q 038269          386 AIMGAVHNYITHTTAAS--LVIMIFFTIVHTPFVVQNIIGRAR  426 (792)
Q Consensus       386 ~~~~~~~~~i~~~~~~~--lv~~~vl~~~~~~~li~~l~~~~~  426 (792)
                      +....+.|.-+.....+  -.+..+.-.+++.|+.||+.++.+
T Consensus       146 ~~~f~~~G~~~A~~va~A~ATfGlv~GgliGgpva~~li~k~~  188 (404)
T COG0786         146 GPTFEDLGAEGATEVAMASATFGLVAGGLIGGPVARWLIKKNK  188 (404)
T ss_pred             HHHHHhcCCcchHHHHHHHHHHHHHHhHhcCcHHHHHHHHhcC
Confidence            55666666544433222  233445556778999999987543

>COG2985 Predicted permease [General function prediction only]

Probab=87.32  E-value=3.1  Score=46.72  Aligned_cols=107  Identities=18%  Similarity=0.317  Sum_probs=58.5

Q ss_pred             hHHHHHHHhhccCccccccccccccHHHHHHHHHHHHHHHHHHHhhccChhh---hhcCCcccchHhHHHHHHHHHHHHH
Q 038269           56 ITSDIVIGLFLGNIQPIRNGFELEMIQTLNYIVEFGMICYMFVLGLEMDPYV---IFKPPTRDAIVAYGGMLSTFILGCS  132 (792)
Q Consensus        56 iv~~IlaGillGp~~~~~~lf~~~~~~~l~~l~~lgl~~llF~~Gle~d~~~---l~~~~~~~~~ia~~~~l~p~~~~~~  132 (792)
                      ..+-+++|.+++..++.   ++   .+.+..  ++|+++|.+.+|+|--+..   +|+.+++-..+++.-++....+.++
T Consensus        37 l~g~L~Vgl~l~~~~~~---i~---~~~l~f--~lGL~LFVy~iGl~aGP~FFss~~~~Gl~~~~~allivi~~~~~a~~  108 (544)
T COG2985          37 LFGVLFVGLFLGQYGFT---IN---TDMLHF--ELGLILFVYTIGLEAGPGFFSSFRKSGLNLNAFALLIVIAALLLAWV  108 (544)
T ss_pred             hhhHhHHHHHhcccccc---cc---cchhhh--hhhhhHhhhhhhheecccHhHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence            34555666666655432   21   122222  8999999999999998765   5778887776666543333333333


Q ss_pred             HHHHhhcccchhHHHHHHHHHHHhhccHHHHHHHHHhcCC
Q 038269          133 LTPFLHYSTHRKIVVAITLSFTLAGSGSHILTRVITNLKI  172 (792)
Q Consensus       133 ~~~~l~~~~~~~~~~al~lg~~ls~Ts~~vv~~iL~el~l  172 (792)
                      +..+++.+  ......++-|+.-+..+..-...++.|++.
T Consensus       109 l~k~~~~~--~~~~~Gm~sGAlTsTP~L~aa~~~L~~lg~  146 (544)
T COG2985         109 LHKLFGID--LGLIAGMFSGALTSTPGLGAAQDILRELGA  146 (544)
T ss_pred             HHhhcCCC--HHHhhhhhcccccCCchhHHHHHHHHhhcc
Confidence            33333322  112223333443333444445556666664

>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication

Probab=87.13  E-value=3.2  Score=40.18  Aligned_cols=93  Identities=11%  Similarity=0.101  Sum_probs=56.1

Q ss_pred             HHHHHHHHHHhHcccCCC--hhHHHHHHHhhccCccccccccccccHHHHHHHHHHHHHHHHHHHhhccChhhhhcCCcc
Q 038269           37 AYVLTNLAHHLLKPMHQP--RITSDIVIGLFLGNIQPIRNGFELEMIQTLNYIVEFGMICYMFVLGLEMDPYVIFKPPTR  114 (792)
Q Consensus        37 il~~~~~~~~l~~rl~~P--~iv~~IlaGillGp~~~~~~lf~~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l~~~~~~  114 (792)
                      .+.++.+.+++++++|+|  .++|-++++.++.-.+..+.-+|       ..+.+++.+++--.+|.+++.+.+++..+.
T Consensus         3 ~~~~~~~~g~l~~~l~~Pa~~llG~mi~~~~~~~~~~~~~~~P-------~~~~~~~qviiG~~iG~~f~~~~l~~~~~~   75 (156)
T TIGR03082         3 LLLVGLAGGLLASLLGLPAAWLLGPLLAGAVLSLAGGLEITLP-------PWLLALAQVVIGILIGSRFTREVLAELKRL   75 (156)
T ss_pred             HHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhcCCccCCCC-------HHHHHHHHHHHHHHHHccCCHHHHHHHHHH
Confidence            455677788899999988  56777777766653332111122       244556667777889999999998776554


Q ss_pred             cchHhHHHHHHHHHHHHHHHHHh
Q 038269          115 DAIVAYGGMLSTFILGCSLTPFL  137 (792)
Q Consensus       115 ~~~ia~~~~l~p~~~~~~~~~~l  137 (792)
                      .. ..+...+...+++...++++
T Consensus        76 ~~-~~l~~~~~~l~~~~~~~~~l   97 (156)
T TIGR03082        76 WP-AALLSTVLLLALSALLAWLL   97 (156)
T ss_pred             HH-HHHHHHHHHHHHHHHHHHHH
Confidence            33 22333333444444444333

The model describes a hydrophobic sequence region that is duplicated to form the AbrB protein of Escherichia coli (not to be confused with a Bacillus subtilis protein with the same gene symbol). In some species, notably the Cyanobacteria and Thermus thermophilus, proteins consist of a single copy rather than two copies. The member from Pseudomonas putida, PP_1415, was suggested to be an ammonia monooxygenase characteristic of heterotrophic nitrifiers, based on an experimental indication of such activity in the organism and a glimmer of local sequence similarity between parts of P. putida protein and an instance of the AmoA protein from Nitrosomonas europaea (PubMed:9732537); we do not believe the sequence similarity to be meaningful. The member from E. coli (b0715, ybgN) appears to be the largely uncharacterized AbrB (aidB regulator) protein of E. coli cited in Volkert, et al. (PubMed 8002588), although we did not manage to tra

>PRK10490 sensor protein KdpD; Provisional

Probab=86.32  E-value=4.8  Score=50.37  Aligned_cols=123  Identities=13%  Similarity=0.078  Sum_probs=80.0

Q ss_pred             CcceEEEEecCCCChhhHHHHHHHhcCCCCCCceEEEEEEeeecccchhhhhcccCccccccchhhhhhhhHHHHHHHHH
Q 038269          443 NQLQILLCLHGSQNITSTLNFLEISRGTANPGVAVYVTDMIELTDQIAATLVQNEGIDTVTVTDKAVMEMREEITTAVQS  522 (792)
Q Consensus       443 ~elrILvcv~~~~~~~~li~l~~~~~~~~~sp~~v~~lhLvel~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~  522 (792)
                      ...|||+|+....+.+.+++-+..++..  .....+++|+..-..+.            .+      .+..+++.+.++ 
T Consensus       249 ~~eriLV~v~~~~~~~~lIr~~~rlA~~--~~a~~~~l~V~~~~~~~------------~~------~~~~~~l~~~~~-  307 (895)
T PRK10490        249 TRDAILLCIGHNTGSEKLVRTAARLAAR--LGSVWHAVYVETPRLHR------------LP------EKKRRAILSALR-  307 (895)
T ss_pred             cCCeEEEEECCCcchHHHHHHHHHHHHh--cCCCEEEEEEecCCcCc------------CC------HHHHHHHHHHHH-
Confidence            4568999999888999999998888865  34579999975321100            00      112244555554 


Q ss_pred             hhhccCcceEEEEeEeecCCCChhHHHHHHHhhcCCcEEEecCCCCccCCCccccCCcchhHHHHHHhhhCC-CceEEE
Q 038269          523 YVDENGGGITLKRMLALSTFSGMPQDICILAEDLMVSLIILPFHKRQLEDGTLDEGHPGFRYVNRKLLRNAT-CSVGIL  600 (792)
Q Consensus       523 ~~~~~~~~v~v~~~t~vs~~~~m~~dI~~~a~e~~~~liilp~h~~~~~~g~~~~~~~~~~~~n~~vl~~ap-CsVgIl  600 (792)
                      .+++-++  .+...  ..  +++++.|.+.|++++++-|+||=.++.+    +    -.-+++-+++++++| -+|=|+
T Consensus       308 lA~~lGa--~~~~~--~~--~dva~~i~~~A~~~~vt~IViG~s~~~~----~----~~~~s~~~~l~r~~~~idi~iv  372 (895)
T PRK10490        308 LAQELGA--ETATL--SD--PAEEKAVLRYAREHNLGKIIIGRRASRR----W----WRRESFADRLARLGPDLDLVIV  372 (895)
T ss_pred             HHHHcCC--EEEEE--eC--CCHHHHHHHHHHHhCCCEEEECCCCCCC----C----ccCCCHHHHHHHhCCCCCEEEE
Confidence            4443232  33322  23  8899999999999999999999654321    1    012367889999998 455444

>TIGR00210 gltS sodium--glutamate symport carrier (gltS)

Probab=86.19  E-value=7.4  Score=43.65  Aligned_cols=166  Identities=9%  Similarity=0.078  Sum_probs=101.0

Q ss_pred             HHHHHHHHHHHHHHhHcc--cCCChhHHHHHHHhhccCccccccccccccHHHHHHHHHHHHHHHHHHHhhccChhhhhc
Q 038269           33 GLLLAYVLTNLAHHLLKP--MHQPRITSDIVIGLFLGNIQPIRNGFELEMIQTLNYIVEFGMICYMFVLGLEMDPYVIFK  110 (792)
Q Consensus        33 ~i~lil~~~~~~~~l~~r--l~~P~iv~~IlaGillGp~~~~~~lf~~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l~~  110 (792)
                      .+.+.+.++..+...++.  +.+|..+.-+++|+++.+..-...... -.++.++.++++++-+++-.+=..+++..+..
T Consensus       223 ~i~iai~iG~~i~~~l~~~~~~lP~fv~am~~giiirni~~~~~~~~-~~~~~i~~I~~~sLdlfl~~AlmsL~L~~l~~  301 (398)
T TIGR00210       223 LIAVCLLVGYELNDLVAKTALMLPTFVWCLFVGVILRNPLSFKKFPW-VAERAVSVIGNVSLSLFLAIALMSLQLWELAD  301 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHHHHhCccc-cchHHHHHHHHHHHHHHHHHHHHhCcHHHHHH
Confidence            344444455566665654  779999999999999997532111111 23458999999999999988888999999999


Q ss_pred             CCcccchHhHHHHHHHHHHHHH-HHHHhhcccchhHHHHHHHHHHHhhccHH--HHHHHHHhcCCCCCchhHHHHHHHHH
Q 038269          111 PPTRDAIVAYGGMLSTFILGCS-LTPFLHYSTHRKIVVAITLSFTLAGSGSH--ILTRVITNLKIGKSDIGKLGMAAGIH  187 (792)
Q Consensus       111 ~~~~~~~ia~~~~l~p~~~~~~-~~~~l~~~~~~~~~~al~lg~~ls~Ts~~--vv~~iL~el~ll~s~~g~l~l~~a~i  187 (792)
                      ..-..+.+.+.+++........ ....++..-+..-..+-..|..+..|+.+  -.-.+-++++-.++-.=-.=+-.+.+
T Consensus       302 ~a~Plliil~~q~i~~~l~~~fv~fr~mg~~ydaaV~~ag~~G~~lGatptaianm~av~~~yg~s~~af~ivPlvgaf~  381 (398)
T TIGR00210       302 LAGPIALILLVQVMFMALYAIFVTFRLMGKDYDAAVLCAGHCGFGLGATPTAIANMQAVTERFGPSHQAFIVVPLVGAFF  381 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHhccchHHHHHHhcccccccccchHHHHHHHHHHHhccCCCCcceehhhhHHHHH
Confidence            9888888888888877654433 33344321110001112445555444432  22333344554333333333456788


Q ss_pred             HHHHHHHHHHHH
Q 038269          188 SDMITMLIICIG  199 (792)
Q Consensus       188 ~Di~~~~ll~i~  199 (792)
                      -|+...+++...
T Consensus       382 id~~n~~~i~~f  393 (398)
T TIGR00210       382 IDIINALVIKQF  393 (398)
T ss_pred             HHHhhHHHHHHH
Confidence            888776665543

>TIGR00808 malonate_madM malonate transporter, MadM subunit

Probab=86.01  E-value=5.6  Score=39.45  Aligned_cols=106  Identities=15%  Similarity=0.214  Sum_probs=68.6

Q ss_pred             HHHHHHHHHHHHHhHccc---CCChhHHHHHHHhhccCcccccccc-ccccHHHHHHHHHHHHH-------HHHHHHhhc
Q 038269           34 LLLAYVLTNLAHHLLKPM---HQPRITSDIVIGLFLGNIQPIRNGF-ELEMIQTLNYIVEFGMI-------CYMFVLGLE  102 (792)
Q Consensus        34 i~lil~~~~~~~~l~~rl---~~P~iv~~IlaGillGp~~~~~~lf-~~~~~~~l~~l~~lgl~-------~llF~~Gle  102 (792)
                      +.++=+.-.+.+++.||+   |++.----|+.|+++...+..  .- ..+....+..++-+|++       |-.-..+.|
T Consensus        18 Fa~vG~~m~~s~~lS~~lT~Gr~hgSAIAI~lGL~lAy~gG~--~TgG~kGlaDi~lfsGiglmGGaMlRDfAIvaTAf~   95 (254)
T TIGR00808        18 FAVVGLMMYVSHLLSKYLTKGKLHGSAIAITMGLVLAYVGGV--YTGGEKGLADIAIFGGFGLMGGAMLRDLAIVATAFE   95 (254)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHccc--ccCCccccchhhhhcchhhhhhHHHHHHHHHHHhhc
Confidence            333334444555566654   677777778889988765321  00 11222233344444433       123346789


Q ss_pred             cChhhhhcCCcccchHhHHHHHHHHHHHHHHHHHhhccc
Q 038269          103 MDPYVIFKPPTRDAIVAYGGMLSTFILGCSLTPFLHYST  141 (792)
Q Consensus       103 ~d~~~l~~~~~~~~~ia~~~~l~p~~~~~~~~~~l~~~~  141 (792)
                      .|.+++||.+..-..--+.+.++||++|..+++.++|..
T Consensus        96 v~~~e~kkaG~~G~vsL~~G~v~~F~~Ga~vA~afGY~D  134 (254)
T TIGR00808        96 VDVKEVKKAGKVGMVALLLGCVIPFVIGAMVAWAFGYRD  134 (254)
T ss_pred             CcHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            999999999988777777889999999999999998853

The MSS family includes the monobasic malonate:Na+ symporter of Malonomonas rubra. It consists of two integral membrane proteins, MadL and MadM.The transporter is believed to catalyze the electroneutral reversible uptake of H+-malonate with one Na+, and both subunits have been shown to be essential for activity.

>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]

Probab=85.98  E-value=42  Score=34.32  Aligned_cols=111  Identities=13%  Similarity=0.163  Sum_probs=78.3

Q ss_pred             hHHHHHHHhHHHHhhhhHHHHHhhcccccccccccccchhHHHHHHHHHHHHhhhHHHHHHHHHhhCCChHHHHHHHHHh
Q 038269          296 SKWTVGKVNYLLSTLYYPIFFFWMGFHAKLFTFEADTLGTWGRFFFLIVISTAGKVVGTVICGLMLGFHWPESVSLGLLL  375 (792)
Q Consensus       296 ~~~l~~kl~~~~~~~~~PlfF~~~Gl~~d~~~l~~~~~~~~~~~~~li~~~~~~K~l~~~l~~~~~~~~~re~~~lg~~l  375 (792)
                      ++.+..-+++-+-.+..|+|=       +++.+.    +.|..+..-++++.+.-++..++.++++|.+..-  .  ..+
T Consensus        61 ~~~i~~lLgPAtVAlAvPLYk-------q~~~ik----~~w~~I~~g~~vGs~~ai~s~~llak~~g~~~~~--~--~Sl  125 (230)
T COG1346          61 GQWINFLLGPATVALAVPLYK-------QRHLIK----RHWKPILAGVLVGSVVAIISGVLLAKLFGLSPEL--I--LSL  125 (230)
T ss_pred             cHHHHHHHHHHHHHHhhHHHH-------HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH--H--HHh
Confidence            344555555555556666652       122232    4566666667777777888888889999987643  2  346


Q ss_pred             hhhhHHHHHHHHHhhcccccChhhHHHHHHHHHHHHhhhhHHHHHh
Q 038269          376 SAKGHFYIFLAIMGAVHNYITHTTAASLVIMIFFTIVHTPFVVQNI  421 (792)
Q Consensus       376 ~~kG~v~l~l~~~~~~~~~i~~~~~~~lv~~~vl~~~~~~~li~~l  421 (792)
                      .||....-+...+..+.|-+.+-+-..++++-++-+.++|++.|++
T Consensus       126 ~PkSvTTpiAm~vs~~iGGip~ltav~Vi~tGi~Gavlg~~llk~~  171 (230)
T COG1346         126 LPKSVTTPIAMEVSESIGGIPALTAVFVILTGILGAVLGPLLLKLL  171 (230)
T ss_pred             cccccccHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            7999999888888888888888777777778888888888888875

>PRK04972 putative transporter; Provisional

Probab=85.92  E-value=9.3  Score=44.97  Aligned_cols=104  Identities=14%  Similarity=0.285  Sum_probs=69.1

Q ss_pred             cccCCChhHHHHHHHhhccCccccccccccccHHHHHHHHHHHHHHHHHHHhhccChhhh---hcCCcccchHhHHHHHH
Q 038269           49 KPMHQPRITSDIVIGLFLGNIQPIRNGFELEMIQTLNYIVEFGMICYMFVLGLEMDPYVI---FKPPTRDAIVAYGGMLS  125 (792)
Q Consensus        49 ~rl~~P~iv~~IlaGillGp~~~~~~lf~~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l---~~~~~~~~~ia~~~~l~  125 (792)
                      +.+++-...|-+++|+++|..+..   .|       ..+.++|+.+|+|.+|++.-+..+   |+.+.+...+++...++
T Consensus        33 ~~~~LG~~~g~L~vgl~~g~~~~~---~~-------~~~~~~gl~lF~~~vG~~~Gp~F~~~l~~~g~~~~~~~~~~~~~  102 (558)
T PRK04972         33 GSIQLGNSIGVLVVSLLLGQQHFS---IN-------TDALNLGFMLFIFCVGVEAGPNFFSIFFRDGKNYLMLALVMVGS  102 (558)
T ss_pred             eeEecCcchHHHHHHHHHHhCCCC---CC-------hHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            446677777999999999976532   22       123579999999999999988765   45555666677766677


Q ss_pred             HHHHHHHHHHHhhcccchhHHHHHHHH-HHHhhccHHHHHHHHH
Q 038269          126 TFILGCSLTPFLHYSTHRKIVVAITLS-FTLAGSGSHILTRVIT  168 (792)
Q Consensus       126 p~~~~~~~~~~l~~~~~~~~~~al~lg-~~ls~Ts~~vv~~iL~  168 (792)
                      +.++++.+.++++.+.      ....| .+=+.|++|.+.....
T Consensus       103 ~~~~~~~~~~~~~~~~------~~~~G~~aGa~T~tp~l~~a~~  140 (558)
T PRK04972        103 ALVIALGLGKLFGWDI------GLTAGMLAGSMTSTPVLVGAGD  140 (558)
T ss_pred             HHHHHHHHHHHhCCCH------HHHHHHhhccccCcHHHHHHHH
Confidence            7777777777776532      12222 2334466666665544

>PRK12460 2-keto-3-deoxygluconate permease; Provisional

Probab=85.81  E-value=3.5  Score=44.14  Aligned_cols=77  Identities=16%  Similarity=0.219  Sum_probs=59.0

Q ss_pred             hHHHHHHHhhccCccccccccccccHHHHHHHHHHHHHHHHHHHhhccChhhhhcCCcccchHhHHHHHHHHHHHHHHHH
Q 038269           56 ITSDIVIGLFLGNIQPIRNGFELEMIQTLNYIVEFGMICYMFVLGLEMDPYVIFKPPTRDAIVAYGGMLSTFILGCSLTP  135 (792)
Q Consensus        56 iv~~IlaGillGp~~~~~~lf~~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~l~p~~~~~~~~~  135 (792)
                      .+--++.|+++|+...       +..+.++.-..+++.++.|..|.++|++.+.+.+.+.+.+++..+++++.+++.+..
T Consensus       169 lilpILiGmilGNld~-------~~~~~l~~Gi~f~I~f~~f~LG~~lnl~~I~~~G~~GIlL~v~vv~~t~~~~~~i~r  241 (312)
T PRK12460        169 ALLPLVLGMILGNLDP-------DMRKFLTKGGPLLIPFFAFALGAGINLSMLLQAGLAGILLGVLVTIVTGFFNIFADR  241 (312)
T ss_pred             HHHHHHHHHHHhccch-------hhHHHHhccceEeHHHHHHHhcCCeeHHHHHHhChHHHHHHHHHHHHHHHHHHHHHH
Confidence            5566778888888421       112333333334788899999999999999999999999999999999999988888


Q ss_pred             Hhhc
Q 038269          136 FLHY  139 (792)
Q Consensus       136 ~l~~  139 (792)
                      +++.
T Consensus       242 llg~  245 (312)
T PRK12460        242 LVGG  245 (312)
T ss_pred             HhCC
Confidence            7754

>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family

Probab=85.02  E-value=12  Score=40.73  Aligned_cols=133  Identities=11%  Similarity=0.153  Sum_probs=77.1

Q ss_pred             cCCChhHHHHHHHhhccCccccccccccccHHHHHHHHHHHHHHHHHHHhhccChhhhhcCCcccchHhHHHHHH-HHHH
Q 038269           51 MHQPRITSDIVIGLFLGNIQPIRNGFELEMIQTLNYIVEFGMICYMFVLGLEMDPYVIFKPPTRDAIVAYGGMLS-TFIL  129 (792)
Q Consensus        51 l~~P~iv~~IlaGillGp~~~~~~lf~~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~l~-p~~~  129 (792)
                      ++.|.+++.+ .|+++...+..   +|..-.+.++.+++...-+-||..|+.++.+.+++.++........-.++ |.+.
T Consensus       180 ~~nP~iia~i-~Gl~~~~~~i~---lP~~l~~~l~~lg~~~~plaLl~lG~~l~~~~~~~~~~~~~~~~~~klil~P~i~  255 (321)
T TIGR00946       180 IKFPPLWAPL-LSVILSLVGFK---MPGLILKSISILSGATTPMALFSLGLALSPRKIKLGVRDAILALIVRFLVQPAVM  255 (321)
T ss_pred             HhCCChHHHH-HHHHHHHHhhc---CcHHHHHHHHHHHHHHHHHHHHHHHHhhChhhhccChHHHHHHHHHHHHHHHHHH
Confidence            5677777654 45666654432   45455788999999999999999999999988877766666555555544 5544


Q ss_pred             HHHHHHHhhcccchhHHHHHHHHHHHhhccHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHH
Q 038269          130 GCSLTPFLHYSTHRKIVVAITLSFTLAGSGSHILTRVITNLKIGKSDIGKLGMAAGIHSDMITMLII  196 (792)
Q Consensus       130 ~~~~~~~l~~~~~~~~~~al~lg~~ls~Ts~~vv~~iL~el~ll~s~~g~l~l~~a~i~Di~~~~ll  196 (792)
                       +.+...++.+.  .   ..-...+++...+++...++.+.--.+.   +.+-+.-.++-+++++.+
T Consensus       256 -~~~~~~~~l~~--~---~~~~~vl~aa~P~a~~~~i~A~~y~~~~---~~aa~~v~~sT~ls~~tl  313 (321)
T TIGR00946       256 -AGISKLIGLRG--L---ELSVAILQAALPGGAVAAVLATEYEVDV---ELASTAVTLSTVLSLISL  313 (321)
T ss_pred             -HHHHHHhCCCh--H---HHHHHHHHHcCChhhHHHHHHHHhCCCH---HHHHHHHHHHHHHHHHHH
Confidence             44444554322  1   1222334444444445555544321232   344444444444444433

>PRK04288 antiholin-like protein LrgB; Provisional

Probab=81.89  E-value=66  Score=33.18  Aligned_cols=83  Identities=8%  Similarity=0.011  Sum_probs=60.5

Q ss_pred             hHHHHHHHHHHHHhhhHHHHHHHHHhhCCChHHHHHHHHHhhhhhHHHHHHHHHhhcccccChhhHHHHHHHHHHHHhhh
Q 038269          335 TWGRFFFLIVISTAGKVVGTVICGLMLGFHWPESVSLGLLLSAKGHFYIFLAIMGAVHNYITHTTAASLVIMIFFTIVHT  414 (792)
Q Consensus       335 ~~~~~~~li~~~~~~K~l~~~l~~~~~~~~~re~~~lg~~l~~kG~v~l~l~~~~~~~~~i~~~~~~~lv~~~vl~~~~~  414 (792)
                      .|..+++-++++.+.-+++++..++++|.+..-    -..+.+|..-.-+...+..+.|-+..-+-..++++-++-.+++
T Consensus        92 ~~~~Il~~~~vG~~~~i~s~~~la~~lgl~~~~----~~Sl~pKSVTtPIAm~is~~iGG~psLtA~~ViitGi~Gai~g  167 (232)
T PRK04288         92 YWWQILGGIVVGSVCSVLIIYLVAKLIQLDNAV----MASMLPQAATTAIALPVSAGIGGIKEITSFAVIFNAVIIYALG  167 (232)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHH----HHHHhhHhhhHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHH
Confidence            455555556666777777888888998887632    2346799998888888888888776666666666777777777


Q ss_pred             hHHHHHh
Q 038269          415 PFVVQNI  421 (792)
Q Consensus       415 ~~li~~l  421 (792)
                      |++.|++
T Consensus       168 ~~llk~~  174 (232)
T PRK04288        168 AKFLKLF  174 (232)
T ss_pred             HHHHHHc
Confidence            8877764

>PRK04972 putative transporter; Provisional

Probab=81.69  E-value=8.8  Score=45.20  Aligned_cols=126  Identities=13%  Similarity=0.149  Sum_probs=78.9

Q ss_pred             HHHHHHHHHhHcc-----cCCChhHHHHHHHhhccCccccccccccccHHHHHHHHHHHHHHHHHHHhhccChhhh---h
Q 038269           38 YVLTNLAHHLLKP-----MHQPRITSDIVIGLFLGNIQPIRNGFELEMIQTLNYIVEFGMICYMFVLGLEMDPYVI---F  109 (792)
Q Consensus        38 l~~~~~~~~l~~r-----l~~P~iv~~IlaGillGp~~~~~~lf~~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l---~  109 (792)
                      +++..+++.+-=+     +++-.--|.+++|+++|...-....+-.-.......+.++|+.+|+..+|+.--.+.+   +
T Consensus       390 i~lG~llG~i~i~~~g~~~~LG~agG~L~~gl~~g~~~~~~~~~~~~p~~a~~~l~~~GL~lFla~vGl~aG~~f~~~~~  469 (558)
T PRK04972        390 FIIGLMIGMITFQFSNFSFGIGNAAGLLFAGIMLGFLRANHPTFGYIPQGALNMVKEFGLMVFMAGVGLSAGSGINNGLG  469 (558)
T ss_pred             HHHHHHHcceeEeeCCeeeeccccHHHHHHHHHHHhccccCCCceeeCHHHHHHHHHHhHHHHHHHHHHhhhHHHHHHHH
Confidence            3344455544333     3344456889999999975432222211235677789999999999999998876554   4


Q ss_pred             cCCcccchHhHHHHHHHHHHHHHHH-HHhhcccchhHHHHHHHH-HHHhhccHHHHHHHHHh
Q 038269          110 KPPTRDAIVAYGGMLSTFILGCSLT-PFLHYSTHRKIVVAITLS-FTLAGSGSHILTRVITN  169 (792)
Q Consensus       110 ~~~~~~~~ia~~~~l~p~~~~~~~~-~~l~~~~~~~~~~al~lg-~~ls~Ts~~vv~~iL~e  169 (792)
                      +.+.+...++..-.++|.++++.++ ++++.+.      ...+| ++=+.|++|.+......
T Consensus       470 ~~g~~~~~~g~~~t~~~~~~~~~~~~~~~k~~~------~~~~G~~aG~~t~~~~l~~~~~~  525 (558)
T PRK04972        470 AVGGQMLIAGLIVSLVPVVICFLFGAYVLRMNR------ALLFGAIMGARTCAPAMEIISDT  525 (558)
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCH------HHHHHHHhCCCCCcHHHHHHHhh
Confidence            5555666666666777877777776 4454331      23444 44566887777665544

>PRK03818 putative transporter; Validated

Probab=80.15  E-value=30  Score=40.69  Aligned_cols=105  Identities=11%  Similarity=0.072  Sum_probs=68.5

Q ss_pred             hHHHHHHHhhccCccccccccccccHHHHHHHHHHHHHHHHHHHhhccChhhhhc----CCcccchHhHHHHHHHHHHHH
Q 038269           56 ITSDIVIGLFLGNIQPIRNGFELEMIQTLNYIVEFGMICYMFVLGLEMDPYVIFK----PPTRDAIVAYGGMLSTFILGC  131 (792)
Q Consensus        56 iv~~IlaGillGp~~~~~~lf~~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l~~----~~~~~~~ia~~~~l~p~~~~~  131 (792)
                      .-|-+++|+++|.......++-.-.......+.++|+.+|+..+|++-=...+..    .+.+...++..-.++|.++++
T Consensus       403 ~~G~L~~gl~~g~~~~~~~~~~~~p~~a~~~l~~~GL~lFla~vGl~aG~~f~~~~~~~~G~~~~~~g~~v~~~~~~~~~  482 (552)
T PRK03818        403 AGGPLIVALILGRIGSIGKLYWFMPPSANLALRELGIVLFLAVVGLKSGGDFVDTLVNGEGLSWIGYGFLITAVPLLIVG  482 (552)
T ss_pred             chHHHHHHHHHHhccCCCCceeecCHHHHHHHHHHhHHHHHHHHHhhhhHHHHHHHhccchHHHHHHHHHHHHHHHHHHH
Confidence            4678999999997543322221123556778889999999999999987766543    344555666666667777777


Q ss_pred             HHH-HHhhcccchhHHHHHHHH-HHHhhccHHHHHHH
Q 038269          132 SLT-PFLHYSTHRKIVVAITLS-FTLAGSGSHILTRV  166 (792)
Q Consensus       132 ~~~-~~l~~~~~~~~~~al~lg-~~ls~Ts~~vv~~i  166 (792)
                      .++ ++++.+.      ...+| .+=+.|++|.+...
T Consensus       483 ~~~~~~~~~~~------~~~~G~~aG~~t~tp~l~~a  513 (552)
T PRK03818        483 ILARMLAKMNY------LTLCGMLAGSMTDPPALAFA  513 (552)
T ss_pred             HHHHHHHcCCH------HHHHHHHhccCCCcHHHHHH
Confidence            775 4555432      23444 34566777777654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	792
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.5 bits (104), Expect = 2e-04
 Identities = 81/509 (15%), Positives = 148/509 (29%), Gaps = 169/509 (33%)

Query: 27  GSGKIVGLLLAYVLTNLAHHLLKPMHQPRITSDIVIGLF---LGNIQPIRNGFELEMIQT 83
           GSGK    +   V  +            ++   +   +F   L N         LEM+Q 
Sbjct: 160 GSGKTW--VALDVCLSY-----------KVQCKMDFKIFWLNLKNCN--SPETVLEMLQK 204

Query: 84  LNYIVEFGMIC----YMFVLGLEMDP------YVIFKPPTRDAI-----VAYGGMLSTFI 128
           L Y ++         +   + L +         ++   P  + +     V      + F 
Sbjct: 205 LLYQID-PNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN 263

Query: 129 LGC---------SLTPFLHYSTHRKI-VVAITLSFTLAGSGSHILTRVITNLKIGKSDIG 178
           L C          +T FL  +T   I +   +++ T     S +L +    L     D+ 
Sbjct: 264 LSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKS-LLLKY---LDCRPQDLP 319

Query: 179 KLGMAAGIHSDMITMLIICIGAVFVLPQGNNT--------QEQIQSAIKMS-ASL----- 224
           +       +   +++    I     +  G  T         +++ + I+ S   L     
Sbjct: 320 RE--VLTTNPRRLSI----IAE--SIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEY 371

Query: 225 --IFQ--SVF--AAKVSPVFMN--WIN--NENPEGKAMKGTHLVLSLAFMVAVCSCSPFY 274
             +F   SVF  +A +  + ++  W +    +     +   H   SL          P  
Sbjct: 372 RKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVM-VVVNKLH-KYSLVE------KQPKE 423

Query: 275 GYSPILSAFMAGIFF------PSEGRMSKWTVGKVN----YLLSTLYYPI----FFFWMG 320
               I       I+        +E  + +  V   N    +    L  P     F+  +G
Sbjct: 424 STISIP-----SIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIG 478

Query: 321 FHAKLFTFEADTLGTWGRF------F-FLIVISTAGKVVGTVICGLMLGFHWPESVS-LG 372
            H K      +       F      F FL       K+             W  S S L 
Sbjct: 479 HHLK----NIEHPERMTLFRMVFLDFRFL-----EQKIRHD-------STAWNASGSILN 522

Query: 373 LLLSAKGHFYIFLAIMGAVHNYIT--HTTAASLV--IMIFF-----TIVHTPFVVQNIIG 423
            L   K  FY           YI         LV  I+ F       ++ + +   +++ 
Sbjct: 523 TLQQLK--FY---------KPYICDNDPKYERLVNAILDFLPKIEENLICSKYT--DLL- 568

Query: 424 RARKHAPTKRMALQ------WLDPSNQLQ 446
                    R+AL       + +   Q+Q
Sbjct: 569 ---------RIALMAEDEAIFEEAHKQVQ 588

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.9 bits (100), Expect = 4e-04
 Identities = 74/537 (13%), Positives = 144/537 (26%), Gaps = 198/537 (36%)

Query: 252 MKG---THLVLSLAFMVAVCSCSPFYGYSPILSAFMAGIFFPSEGRMSKW-TVGKVN--- 304
           + G   T + L       VC          +       IF         W  +   N   
Sbjct: 158 VLGSGKTWVALD------VCL------SYKVQCKMDFKIF---------WLNLKNCNSPE 196

Query: 305 ---YLLSTLYYPIFFFW--MGFHAKLFTFEADTLGTWGRFFF--------LIV------- 344
               +L  L Y I   W     H+        ++    R           L+V       
Sbjct: 197 TVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNA 256

Query: 345 -------------ISTAGKVVGTVICG----------LMLGFHWPESVSLGLLLSAKGHF 381
                        ++T  K V   +              +     E     LLL      
Sbjct: 257 KAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEV--KSLLLK----- 309

Query: 382 YIFLAIMGAVHNYITHTTAASL---VIMIFFTIVHTPFVVQNIIGRARKHAPTKRMALQW 438
                                L   V+         P  + +II         +     W
Sbjct: 310 -------------YLDCRPQDLPREVLTT------NPRRL-SIIA-----ESIRDGLATW 344

Query: 439 LDPSNQLQILLCLHGSQNITSTLNFLEISRGTANPGVAVYVTDMIELTDQIAATLVQNEG 498
               +  + + C   +  I S+LN LE       P       +  ++ D+++        
Sbjct: 345 ----DNWKHVNCDKLTTIIESSLNVLE-------P------AEYRKMFDRLS-------- 379

Query: 499 I--DTVTVTDKAVMEM--REEITTAVQSYVDENGGGITLKRMLAL-----STFS--GMPQ 547
           +   +  +    ++ +   + I + V   V++       K  L       ST S   +  
Sbjct: 380 VFPPSAHIPTI-LLSLIWFDVIKSDVMVVVNK-----LHKYSLVEKQPKESTISIPSIYL 433

Query: 548 DICILAEDLMVSLIILPFHKRQLEDGTLDEGHPGFRYVNRKLLRNATCSVGILVDRGFGS 607
           ++ +  E+   +L     H+  ++            Y   K   +       L D+ F S
Sbjct: 434 ELKVKLEN-EYAL-----HRSIVD-----------HYNIPKTFDSDDLIPPYL-DQYFYS 475

Query: 608 -----IENISRSQAAS------LNVAVIFIGGKDDREALAYASRVARHPAVKLTVIR--- 653
                ++NI   +  +      L+    F+  K   ++ A+ +  +      L  ++   
Sbjct: 476 HIGHHLKNIEHPERMTLFRMVFLDFR--FLEQKIRHDSTAWNASGSILNT--LQQLKFYK 531

Query: 654 -FLLDNSENPQRRAATYKDNTAELEEEMKIDDEC----FA------EFYE---RQVA 696
            ++ DN    +R      D   ++EE +           A        +E   +QV 
Sbjct: 532 PYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQVQ 588

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	792
1zcd_A	388	Na(+)/H(+) antiporter 1; membrane protein; 3.45A {	99.9
3mt0_A	290	Uncharacterized protein PA1789; structural genomic	99.43
3loq_A	294	Universal stress protein; structural genomics, PSI	99.35
3olq_A	319	Universal stress protein E; structural genomics, P	99.3
3ab8_A	268	Putative uncharacterized protein TTHA0350; tandem-	99.28
3cis_A	309	Uncharacterized protein; alpha/beta hydrolase, ATP	99.23
3s3t_A	146	Nucleotide-binding protein, universal stress PROT	98.16
3fdx_A	143	Putative filament protein / universal stress PROT;	98.15
3dlo_A	155	Universal stress protein; unknown function, struct	98.15
3hgm_A	147	Universal stress protein TEAD; rossman fold, signa	98.13
3fg9_A	156	Protein of universal stress protein USPA family; A	98.04
1mjh_A	162	Protein (ATP-binding domain of protein MJ0577); hy	98.04
3idf_A	138	USP-like protein; universal, stress, PSI, MCSG, st	98.01
2dum_A	170	Hypothetical protein PH0823; conserved hypothetica	97.99
2z08_A	137	Universal stress protein family; uncharacterized c	97.91
3tnj_A	150	Universal stress protein (USP); structural genomic	97.87
1tq8_A	163	Hypothetical protein RV1636; MTCY01B2.28, structur	97.87
3idf_A	138	USP-like protein; universal, stress, PSI, MCSG, st	97.84
2gm3_A	175	Unknown protein; AT3G01520, putative ethylene-resp	97.8
2dum_A	170	Hypothetical protein PH0823; conserved hypothetica	97.77
3s3t_A	146	Nucleotide-binding protein, universal stress PROT	97.77
1jmv_A	141	USPA, universal stress protein A; chaperone; 1.85A	97.75
3zux_A	332	Transporter, ASBTNM; transport protein, membrane p	97.72
3dlo_A	155	Universal stress protein; unknown function, struct	97.66
3hgm_A	147	Universal stress protein TEAD; rossman fold, signa	97.65
3tnj_A	150	Universal stress protein (USP); structural genomic	97.64
1q77_A	138	Hypothetical protein AQ_178; structural genomics,	97.48
3fg9_A	156	Protein of universal stress protein USPA family; A	97.4
1mjh_A	162	Protein (ATP-binding domain of protein MJ0577); hy	97.36
3fdx_A	143	Putative filament protein / universal stress PROT;	97.36
2z08_A	137	Universal stress protein family; uncharacterized c	97.32
3mt0_A	290	Uncharacterized protein PA1789; structural genomic	97.24
1tq8_A	163	Hypothetical protein RV1636; MTCY01B2.28, structur	97.22
1jmv_A	141	USPA, universal stress protein A; chaperone; 1.85A	97.2
3olq_A	319	Universal stress protein E; structural genomics, P	97.18
1q77_A	138	Hypothetical protein AQ_178; structural genomics,	96.96
2gm3_A	175	Unknown protein; AT3G01520, putative ethylene-resp	96.85
3loq_A	294	Universal stress protein; structural genomics, PSI	96.85
3cis_A	309	Uncharacterized protein; alpha/beta hydrolase, ATP	96.78
3ab8_A	268	Putative uncharacterized protein TTHA0350; tandem-	96.72
3g40_A	294	Na-K-CL cotransporter; alpha/beta fold 10-stranded	94.15

>1zcd_A Na(+)/H(+) antiporter 1; membrane protein; 3.45A {Escherichia coli} PDB: 3fi1_A

Probab=99.90  E-value=1.2e-23  Score=227.79  Aligned_cols=302  Identities=16%  Similarity=0.155  Sum_probs=216.9

Q ss_pred             HHHHHHHHHHHHHHHHHhhccChhhh----hcCCcc--cchHhHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHh
Q 038269           83 TLNYIVEFGMICYMFVLGLEMDPYVI----FKPPTR--DAIVAYGGMLSTFILGCSLTPFLHYSTHRKIVVAITLSFTLA  156 (792)
Q Consensus        83 ~l~~l~~lgl~~llF~~Gle~d~~~l----~~~~~~--~~~ia~~~~l~p~~~~~~~~~~l~~~~~~~~~~al~lg~~ls  156 (792)
                      ....+.+-.+.+|||.+|+|+|.+.+    ++.+|.  ....++.|+++|++++    ..++....    .+..-..+.+
T Consensus        59 l~~windglm~lFff~vGLEik~e~l~G~L~~~~~a~~p~~aAlgGmivP~~iy----~~~~~~~~----~~~~gw~ip~  130 (388)
T 1zcd_A           59 MLLWINDALMAVFFLLVGLEVKRELMQGSLASLRQAAFPVIAAIGGMIVPALLY----LAFNYADP----ITREGWAIPA  130 (388)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSSTTTSHHHHHHHHHHTTTTHHHH----GGGCCSST----THHHHTSSSS
T ss_pred             HHHHHhhHhHHHHHHHHHHHhhHHHhcchhhhhhhHHHHHHHHHHHHHHHHHHH----HHHhcCCh----hhhhhhHHHH
Confidence            34556666777899999999999877    555553  6788999999999874    33433211    1344456677


Q ss_pred             hccHHHHHHHHHhcC-CCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHHHHHHHHHHh
Q 038269          157 GSGSHILTRVITNLK-IGKSDIGKLGMAAGIHSDMITMLIICIGAVFVLPQGNNTQEQIQSAIKMSASLIFQSVFAAKVS  235 (792)
Q Consensus       157 ~Ts~~vv~~iL~el~-ll~s~~g~l~l~~a~i~Di~~~~ll~i~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~v~  235 (792)
                      .|+.+....++..++ ..++..++.+++.|++||+.+|+++++++.    + +..      ..+... .+++.++.    
T Consensus       131 ATdIAfal~vL~~lg~~~p~~l~~flLalAvvDDl~aiivIAvfyt----~-~~~------~~~l~~-~~~~~~~~----  194 (388)
T 1zcd_A          131 ATDIAFALGVLALLGSRVPLALKIFLMALAIIDDLGAIIIIALFYT----N-DLS------MASLGV-AAVAIAVL----  194 (388)
T ss_dssp             CCCHHHHHHHHHSSCSSSCSSSHHHHHHHHHHHHHHHHHHHHHHSC----C-CCC------HHHHHH-HHHHHHHH----
T ss_pred             HHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHHc----C-Ccc------HHHHHH-HHHHHHHH----
Confidence            799888889999875 456777899999999999999999998742    2 121      111111 11111111    


Q ss_pred             HHHHHHHhhhcCCCCcccchhHHHHHHHHHHHHHHhhhhCchhhHHHHHHhhhcCCCC----cchHHHHHHHhHHHHhhh
Q 038269          236 PVFMNWINNENPEGKAMKGTHLVLSLAFMVAVCSCSPFYGYSPILSAFMAGIFFPSEG----RMSKWTVGKVNYLLSTLY  311 (792)
Q Consensus       236 r~~~~~i~~~~~~~~~~~e~~~~~il~~~l~~~~~ae~~G~~~~lgafvaGl~l~~~~----~~~~~l~~kl~~~~~~~~  311 (792)
                          .++.|+.     +++...+.++ .+ .+.+.++..|+|+++|+|++|+++|..+    +..+++++++++++..++
T Consensus       195 ----~~l~r~~-----v~~~~~y~~l-gl-~~w~~~~~sGvHatigg~l~Gl~ip~~~~~~~~~~~~le~~l~p~v~~~i  263 (388)
T 1zcd_A          195 ----AVLNLCG-----ARRTGVYILV-GV-VLWTAVLKSGVHATLAGVIVGFFIPLKEKHGRSPAKRLEHVLHPWVAYLI  263 (388)
T ss_dssp             ----HHHHHTT-----CCCTHHHHHH-HH-HHHHHTTTSHHHHHHHHHHHHHHSCCCGGGSSCHHHHHHHHHHHHHHHTH
T ss_pred             ----HHHHHhc-----chhHHHHHHH-HH-HHHHHHHHhCccHHHHHHHHHHhccCCCccCCCHHHHHHHHHHHHHHHHH
Confidence                1222221     1223233333 22 4456779999999999999999999853    357889999999999999


Q ss_pred             hHHH-HHhhccccccccccc-ccchhHHHHHHHHHHHHhhhHHHHHHHHHhh----------CCChHHHHHHHHHhhhhh
Q 038269          312 YPIF-FFWMGFHAKLFTFEA-DTLGTWGRFFFLIVISTAGKVVGTVICGLML----------GFHWPESVSLGLLLSAKG  379 (792)
Q Consensus       312 ~Plf-F~~~Gl~~d~~~l~~-~~~~~~~~~~~li~~~~~~K~l~~~l~~~~~----------~~~~re~~~lg~~l~~kG  379 (792)
                      +|+| |+..|.++|...... .++.    ...+++..+++|+++++..++..          |++|+|...+|++++.++
T Consensus       264 lPlFaFanaGv~l~~~~~~~l~~~~----~lgi~~glvvGK~~Gi~~~~~l~~rl~~~~lp~g~~~~~~~~vg~L~gigf  339 (388)
T 1zcd_A          264 LPLFAFANAGVSLQGVTLDGLTSIL----PLGIIAGLLIGKPLGISLFCWLALRLKLAHLPEGTTYQQIMVVGILCGIGF  339 (388)
T ss_dssp             HHHHHHHHCCCCCSSSCCCTHHHHS----STTTTHHHHHTTGGGSTTHHHHTSSCTTTCCCCSCCGGGGTTHHHHTTCCH
T ss_pred             HHHHHHHhcCeeecccchhhccChH----HHHHHHHHHHHHHHHHHHHHHHHHHhccCcCCCCCCHHHHHHHHHHhccch
Confidence            9999 999999999743211 1111    22445566899999955555554          899999999999999999


Q ss_pred             HHHHHHHHHhhcccc--cChhhHHHHHHHHHHHHhhhhHHHHHhhh
Q 038269          380 HFYIFLAIMGAVHNY--ITHTTAASLVIMIFFTIVHTPFVVQNIIG  423 (792)
Q Consensus       380 ~v~l~l~~~~~~~~~--i~~~~~~~lv~~~vl~~~~~~~li~~l~~  423 (792)
                      ++++++++.+++.+.  +.++.+..++++++++++++|.+.|+.++
T Consensus       340 tmsL~Ia~laf~~~~~~~~~~ak~~il~~s~~s~i~g~~~L~~~~~  385 (388)
T 1zcd_A          340 TMSIFIASLAFGSVDPELINWAKLGILVGSISSAVIGYSWLRVRLR  385 (388)
T ss_dssp             HHHHHHHHHHSTTSSCSSHHHHHHHHHHHHHTTTSTTTGGGTTTC-
T ss_pred             HHHHHHHHHhccCCchhhHhhHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            999999999998875  35677999999999999999988876543

>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}

Probab=99.43  E-value=4.6e-12  Score=134.52  Aligned_cols=261  Identities=14%  Similarity=0.104  Sum_probs=165.8

Q ss_pred             ceEEEEecCCCChhhHHHHHHHhcCCCCCCceEEEEEEeeecccchhhhhcccCccccccchhhhhhhhHHHHHHHHHhh
Q 038269          445 LQILLCLHGSQNITSTLNFLEISRGTANPGVAVYVTDMIELTDQIAATLVQNEGIDTVTVTDKAVMEMREEITTAVQSYV  524 (792)
Q Consensus       445 lrILvcv~~~~~~~~li~l~~~~~~~~~sp~~v~~lhLvel~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~  524 (792)
                      -+||+++...+.....++.+..++...  ...++++|+++ +          +  +.        .+.-++..+   .+.
T Consensus         8 ~~ILv~~D~s~~s~~al~~A~~la~~~--~a~l~ll~v~~-~----------~--~~--------~~~l~~~~~---~~~   61 (290)
T 3mt0_A            8 RSILVVIEPDQLEGLALKRAQLIAGVT--QSHLHLLVCEK-R----------R--DH--------SAALNDLAQ---ELR   61 (290)
T ss_dssp             CEEEEECCSSCSCCHHHHHHHHHHHHH--CCEEEEEEECS-S----------S--CC--------HHHHHHHHH---HHH
T ss_pred             ceEEEEeCCCccchHHHHHHHHHHHhc--CCeEEEEEeeC-c----------H--HH--------HHHHHHHHH---HHh
Confidence            379999998888888888888887553  35799999987 1          0  00        011122222   222


Q ss_pred             hccCcceEEEEeEeecCCCChhHHHHHHHhhcCCcEEEecCCCCccCCCccccCCcchhHHHHHHhhhCCCceEEEecCC
Q 038269          525 DENGGGITLKRMLALSTFSGMPQDICILAEDLMVSLIILPFHKRQLEDGTLDEGHPGFRYVNRKLLRNATCSVGILVDRG  604 (792)
Q Consensus       525 ~~~~~~v~v~~~t~vs~~~~m~~dI~~~a~e~~~~liilp~h~~~~~~g~~~~~~~~~~~~n~~vl~~apCsVgIlVdrg  604 (792)
                      .   .++.++......  .+..+.|++.|++.++|+|++|.|.+....      ...+++.-+++++++||+|-| |..+
T Consensus        62 ~---~~~~~~~~~~~~--g~~~~~i~~~a~~~~~dliV~G~~~~~~~~------~~~~gs~~~~vl~~~~~PVlv-v~~~  129 (290)
T 3mt0_A           62 E---EGYSVSTNQAWK--DSLHQTIIAEQQAEGCGLIIKQHFPDNPLK------KAILTPDDWKLLRFAPCPVLM-TKTA  129 (290)
T ss_dssp             H---TTCCEEEEEECS--SSHHHHHHHHHHHHTCSEEEEECCCSCTTS------TTSCCHHHHHHHHHCSSCEEE-ECCC
T ss_pred             h---CCCeEEEEEEeC--CCHHHHHHHHHHhcCCCEEEEecccCCchh------hcccCHHHHHHHhcCCCCEEE-ecCC
Confidence            2   247777666545  678999999999999999999998653322      224677889999999999854 4322


Q ss_pred             CCCccccccccccceeEEEEeccCcC-------hHHHHHHHHHHhcCCCeEEEEEEeeecCCCCcccccccccCCcchhh
Q 038269          605 FGSIENISRSQAASLNVAVIFIGGKD-------DREALAYASRVARHPAVKLTVIRFLLDNSENPQRRAATYKDNTAELE  677 (792)
Q Consensus       605 ~~~~~~~~~~~~~~~~v~v~f~GG~d-------dreAL~~a~rma~~~~v~ltv~r~~~~~~~~~~~~~~~~~~~~~~~~  677 (792)
                      ..        . ...+|++++=|.++       .+.|+++|.++++..+.+++++|+.........  ..    .....+
T Consensus       130 ~~--------~-~~~~Ilva~D~s~~~~~~~~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~--~~----~~~~~~  194 (290)
T 3mt0_A          130 RP--------W-TGGKILAAVDVGNNDGEHRSLHAGIISHAYDIAGLAKATLHVISAHPSPMLSSA--DP----TFQLSE  194 (290)
T ss_dssp             SC--------S-TTCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEC---------------CHHHHH
T ss_pred             CC--------C-CCCeEEEEECCCCcchhhhHHHHHHHHHHHHHHHHcCCeEEEEEEecCcccccc--Cc----hhHHHH
Confidence            11        1 34699999999987       799999999999999999999999864321100  00    000112


Q ss_pred             hhhhhhHHHHHHHHHhhcCCCcEEEEEEecCChHHHHHHHHhhh--cCccEEEEecCCCCCcccccCCcccCCCCccchh
Q 038269          678 EEMKIDDECFAEFYERQVAEGHVAYAEKHLANSSETFATLRSLE--GQYALIIVGRGERANSILTVGMNDWQQCPELGPI  755 (792)
Q Consensus       678 ~~~~~d~~~l~e~~~~~~~~~~v~y~e~~v~~~~e~~~~i~~~~--~~~dL~iVGr~~~~~s~~~~gl~~w~e~~eLG~i  755 (792)
                      ..++..++.++++.+++.. ..+.+.   +..| +....|.+.+  .++||+++|+++..      |+.+|    =+|-+
T Consensus       195 ~~~~~~~~~l~~~~~~~g~-~~~~~~---v~~g-~~~~~I~~~a~~~~~dLiVmG~~g~~------~~~~~----~~Gsv  259 (290)
T 3mt0_A          195 TIEARYREACRTFQAEYGF-SDEQLH---IEEG-PADVLIPRTAQKLDAVVTVIGTVART------GLSGA----LIGNT  259 (290)
T ss_dssp             HHHHHHHHHHHHHHHHHTC-CTTTEE---EEES-CHHHHHHHHHHHHTCSEEEEECCSSC------CGGGC----CSCHH
T ss_pred             HHHHHHHHHHHHHHHHcCC-CcceEE---Eecc-CHHHHHHHHHHhcCCCEEEECCCCCc------CCcce----ecchH
Confidence            2223345566666555421 111111   1122 2334444433  34999999997531      23332    26877


Q ss_pred             hhhhhcCCCCCceeEEEEeee
Q 038269          756 GDVLSGSDFLVRTSVLIIKQH  776 (792)
Q Consensus       756 Gd~las~d~~~~~SvLvvqq~  776 (792)
                      .+-+...   ++++||||..+
T Consensus       260 ~~~vl~~---~~~pVLvv~~~  277 (290)
T 3mt0_A          260 AEVVLDT---LESDVLVLKPD  277 (290)
T ss_dssp             HHHHHTT---CSSEEEEECCH
T ss_pred             HHHHHhc---CCCCEEEECCC
Confidence            7777764   67899999764

>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}

Probab=99.35  E-value=5e-12  Score=134.44  Aligned_cols=266  Identities=17%  Similarity=0.101  Sum_probs=164.6

Q ss_pred             ceEEEEecCCCChhhHHHHHHHhcCCCCCCceEEEEEEeeecccchhhhhcccCccccccchhhhhhhhHHHHHHHHHhh
Q 038269          445 LQILLCLHGSQNITSTLNFLEISRGTANPGVAVYVTDMIELTDQIAATLVQNEGIDTVTVTDKAVMEMREEITTAVQSYV  524 (792)
Q Consensus       445 lrILvcv~~~~~~~~li~l~~~~~~~~~sp~~v~~lhLvel~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~  524 (792)
                      -|||+|+...+.....++.+..++..  ....++++|+++.+......  ...  ......+ ...+..++.++.+....
T Consensus        23 ~~ILv~vD~s~~s~~al~~A~~lA~~--~~a~l~ll~v~~~~~~~~~~--~~~--~~~~~~~-~~~~~~~~~l~~~~~~~   95 (294)
T 3loq_A           23 NAMLLPTDLSENSFKVLEYLGDFKKV--GVEEIGVLFVINLTKLSTVS--GGI--DIDHYID-EMSEKAEEVLPEVAQKI   95 (294)
T ss_dssp             CEEEEECCSCTGGGGGGGGHHHHHHT--TCCEEEEECCEECTTC-------CC--CTTHHHH-HHHHHHHHHHHHHHHHH
T ss_pred             ccEEEecCCCHHHHHHHHHHHHHHhh--cCCEEEEEEEecCccccccc--ccc--cHHHHHH-HHHHHHHHHHHHHHHHH
Confidence            38999999888888888888888754  34789999998865422110  000  0000001 11122344554444443


Q ss_pred             hccCcceEEEE-eEeecCCCChhHHHHHHHhhcCCcEEEecCCCCccCCCccccCCcchhHHHHHHhhhCCCceEEEecC
Q 038269          525 DENGGGITLKR-MLALSTFSGMPQDICILAEDLMVSLIILPFHKRQLEDGTLDEGHPGFRYVNRKLLRNATCSVGILVDR  603 (792)
Q Consensus       525 ~~~~~~v~v~~-~t~vs~~~~m~~dI~~~a~e~~~~liilp~h~~~~~~g~~~~~~~~~~~~n~~vl~~apCsVgIlVdr  603 (792)
                      +  ..++.++. .....  .+..+.|  .|++.++|+|++|.|.+....+      ..++++.+++++++||+|-| |.+
T Consensus        96 ~--~~g~~~~~~~v~~~--g~~~~~I--~a~~~~~DliV~G~~g~~~~~~------~~~Gs~~~~vl~~~~~PVlv-v~~  162 (294)
T 3loq_A           96 E--AAGIKAEVIKPFPA--GDPVVEI--IKASENYSFIAMGSRGASKFKK------ILLGSVSEGVLHDSKVPVYI-FKH  162 (294)
T ss_dssp             H--HTTCEEEECSSCCE--ECHHHHH--HHHHTTSSEEEEECCCCCHHHH------HHHCCHHHHHHHHCSSCEEE-ECC
T ss_pred             H--HcCCCcceeEeecc--CChhHhe--eeccCCCCEEEEcCCCCccccc------eeeccHHHHHHhcCCCCEEE-ecC
Confidence            3  23577776 33313  5788899  9999999999999985432211      22456778999999999844 444


Q ss_pred             CCCCccccccccccceeEEEEeccCcChHHHHHHHHHHhcCCCeEEEEEEeeecCCCCcccccccccCCcchhhhhhhhh
Q 038269          604 GFGSIENISRSQAASLNVAVIFIGGKDDREALAYASRVARHPAVKLTVIRFLLDNSENPQRRAATYKDNTAELEEEMKID  683 (792)
Q Consensus       604 g~~~~~~~~~~~~~~~~v~v~f~GG~ddreAL~~a~rma~~~~v~ltv~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  683 (792)
                      +...       .....+|++++-|.+.+++|+++|.++++..+.+++++++.....                   .++.-
T Consensus       163 ~~~~-------~~~~~~Ilv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~-------------------~~~~l  216 (294)
T 3loq_A          163 DMVV-------NSLFDRVLVAYDFSKWADRALEYAKFVVKKTGGELHIIHVSEDGD-------------------KTADL  216 (294)
T ss_dssp             CTTT-------TCTTSEEEEECCSSHHHHHHHHHHHHHHHHHTCEEEEEEECSSSC-------------------CHHHH
T ss_pred             cccc-------CccCCEEEEEECCCHHHHHHHHHHHHHhhhcCCEEEEEEEccCch-------------------HHHHH
Confidence            3210       123469999999999999999999999999999999999965321                   01111


Q ss_pred             HHHHHHHHHhhcCCCcEEEEEEecCChHHHHHHHHhhhc--CccEEEEecCCCCCcccccCCcccCCCCccchhhhhhhc
Q 038269          684 DECFAEFYERQVAEGHVAYAEKHLANSSETFATLRSLEG--QYALIIVGRGERANSILTVGMNDWQQCPELGPIGDVLSG  761 (792)
Q Consensus       684 ~~~l~e~~~~~~~~~~v~y~e~~v~~~~e~~~~i~~~~~--~~dL~iVGr~~~~~s~~~~gl~~w~e~~eLG~iGd~las  761 (792)
                      +++.+.+ +++  +-++.+   .+..| +....|.+..+  ++||+++|+++..      ++.+|    =+|-+.+-+..
T Consensus       217 ~~~~~~l-~~~--~~~~~~---~~~~g-~~~~~I~~~a~~~~~dLlV~G~~~~~------~~~~~----~~Gs~~~~vl~  279 (294)
T 3loq_A          217 RVMEEVI-GAE--GIEVHV---HIESG-TPHKAILAKREEINATTIFMGSRGAG------SVMTM----ILGSTSESVIR  279 (294)
T ss_dssp             HHHHHHH-HHT--TCCEEE---EEECS-CHHHHHHHHHHHTTCSEEEEECCCCS------CHHHH----HHHCHHHHHHH
T ss_pred             HHHHHHH-HHc--CCcEEE---EEecC-CHHHHHHHHHHhcCcCEEEEeCCCCC------Cccce----eeCcHHHHHHh
Confidence            2233333 222  223332   23334 44555555533  6999999997632      22222    15666666655


Q ss_pred             CCCCCceeEEEEeee
Q 038269          762 SDFLVRTSVLIIKQH  776 (792)
Q Consensus       762 ~d~~~~~SvLvvqq~  776 (792)
                      .   .++.||||.+.
T Consensus       280 ~---~~~pvLvv~~~  291 (294)
T 3loq_A          280 R---SPVPVFVCKRG  291 (294)
T ss_dssp             H---CSSCEEEECSC
T ss_pred             c---CCCCEEEECCC
Confidence            3   56799999765

>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}

Probab=99.30  E-value=1.2e-10  Score=124.93  Aligned_cols=290  Identities=12%  Similarity=0.049  Sum_probs=169.4

Q ss_pred             ceEEEEecCCCChhhHHHHHHHhcCCCCCCceEEEEEEeeecccchhhhhcccCccccccchhhhhhhhHHHHHHHHHhh
Q 038269          445 LQILLCLHGSQNITSTLNFLEISRGTANPGVAVYVTDMIELTDQIAATLVQNEGIDTVTVTDKAVMEMREEITTAVQSYV  524 (792)
Q Consensus       445 lrILvcv~~~~~~~~li~l~~~~~~~~~sp~~v~~lhLvel~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~  524 (792)
                      -+||+++...++....++.+..++...  ...++++|+++-.....+-....+   ..........+..++.++.+....
T Consensus         8 k~ILv~~D~s~~s~~al~~A~~lA~~~--~a~l~ll~v~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~   82 (319)
T 3olq_A            8 QNLLVVIDPNQDDQPALRRAVYIVQRN--GGRIKAFLPVYDLSYDMTTLLSPD---ERNAMRKGVINQKTAWIKQQARYY   82 (319)
T ss_dssp             CEEEEECCTTCSCCHHHHHHHHHHHHH--CCEEEEEEEECCGGGGCTTTSCHH---HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ceEEEEECCCcccHHHHHHHHHHHHHc--CCeEEEEEEecccchhhccccChh---hHHHHHHHHHHHHHHHHHHHHHHH
Confidence            379999998888888888888887543  368999999863211000000000   000000001111233333222222


Q ss_pred             hccCcceEEEEeEeecCCCChhHHHHHHHhhcCCcEEEecCCCCccCCCccccCCcchhHHHHHHhhhCCCceEEEecCC
Q 038269          525 DENGGGITLKRMLALSTFSGMPQDICILAEDLMVSLIILPFHKRQLEDGTLDEGHPGFRYVNRKLLRNATCSVGILVDRG  604 (792)
Q Consensus       525 ~~~~~~v~v~~~t~vs~~~~m~~dI~~~a~e~~~~liilp~h~~~~~~g~~~~~~~~~~~~n~~vl~~apCsVgIlVdrg  604 (792)
                      .  ..++.++......  .+..+.|++.|++.++|+|++|.|.+....      ...+++.-.++++++||+|-| |..+
T Consensus        83 ~--~~~v~~~~~~~~~--g~~~~~i~~~a~~~~~DLiV~G~~g~~~~~------~~~~Gs~~~~vl~~~~~PVlv-v~~~  151 (319)
T 3olq_A           83 L--EAGIQIDIKVIWH--NRPYEAIIEEVITDKHDLLIKMAHQHDKLG------SLIFTPLDWQLLRKCPAPVWM-VKDK  151 (319)
T ss_dssp             H--HTTCCEEEEEEEC--SCHHHHHHHHHHHHTCSEEEEEEBCC--CC------SCBCCHHHHHHHHHCSSCEEE-EESS
T ss_pred             h--hcCCeEEEEEEec--CChHHHHHHHHHhcCCCEEEEecCcCchhh------cccccccHHHHHhcCCCCEEE-ecCc
Confidence            2  2357777666645  789999999999999999999999653322      223677789999999999855 4332


Q ss_pred             CCCccccccccccceeEEEEeccCcC-------hHHHHHHHHHHhcCC--CeEEEEEEeeecCCCCcccccccccCCcch
Q 038269          605 FGSIENISRSQAASLNVAVIFIGGKD-------DREALAYASRVARHP--AVKLTVIRFLLDNSENPQRRAATYKDNTAE  675 (792)
Q Consensus       605 ~~~~~~~~~~~~~~~~v~v~f~GG~d-------dreAL~~a~rma~~~--~v~ltv~r~~~~~~~~~~~~~~~~~~~~~~  675 (792)
                      .         .....+|++++=|.++       .+.|+++|.++++..  +.+++++|+............. .......
T Consensus       152 ~---------~~~~~~Ilva~D~s~~~~~~~~~s~~al~~a~~la~~~~~~a~l~ll~v~~~~~~~~~~~~~-~~~~~~~  221 (319)
T 3olq_A          152 E---------WPEYGTIVVAANLSNEESYHDALNLKLIELTNDLSHRIQKDPDVHLLSAYPVAPINIAIELP-DFDPNLY  221 (319)
T ss_dssp             C---------CCTTCEEEEECCCSCCSTHHHHHHHHHHHHHHHHHHHHCSSCCEEEEEEECCCSCSCCTTCT-TCCHHHH
T ss_pred             c---------cccCCeEEEEECCCCcchhHHHHHHHHHHHHHHHHHhccCCCeEEEEEeecCcchhhhccCC-cccHHHH
Confidence            1         1134689999999885       499999999999876  9999999998643311000000 0000000


Q ss_pred             hhhhhhhhHHHHHHHHHhhcCCCcEEEEEEecCChHHHHHHHHhhh--cCccEEEEecCCCCCcccccCCcccCCCCccc
Q 038269          676 LEEEMKIDDECFAEFYERQVAEGHVAYAEKHLANSSETFATLRSLE--GQYALIIVGRGERANSILTVGMNDWQQCPELG  753 (792)
Q Consensus       676 ~~~~~~~d~~~l~e~~~~~~~~~~v~y~e~~v~~~~e~~~~i~~~~--~~~dL~iVGr~~~~~s~~~~gl~~w~e~~eLG  753 (792)
                      .+..++.-++.++++.+++.. ..+.+.   +..| +....|.+.+  .+.||+++|+++..      |+.+|    =+|
T Consensus       222 ~~~~~~~~~~~l~~~~~~~~~-~~~~~~---v~~g-~~~~~I~~~a~~~~~dLiV~G~~g~~------~~~~~----~~G  286 (319)
T 3olq_A          222 NNALRGQHLIAMKELRQKFSI-PEEKTH---VKEG-LPEQVIPQVCEELNAGIVVLGILGRT------GLSAA----FLG  286 (319)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTC-CGGGEE---EEES-CHHHHHHHHHHHTTEEEEEEECCSCC------STHHH----HHH
T ss_pred             HHHHHHHHHHHHHHHHHHhCC-CcccEE---EecC-CcHHHHHHHHHHhCCCEEEEeccCcc------CCccc----ccc
Confidence            111222335566777554422 122111   1222 2344444443  36899999996531      22222    157


Q ss_pred             hhhhhhhcCCCCCceeEEEEeeecc
Q 038269          754 PIGDVLSGSDFLVRTSVLIIKQHDF  778 (792)
Q Consensus       754 ~iGd~las~d~~~~~SvLvvqq~~~  778 (792)
                      -+-+-+...   ++++||||..+.+
T Consensus       287 sv~~~vl~~---~~~pVLvv~~~~~  308 (319)
T 3olq_A          287 NTAEQLIDH---IKCDLLAIKPDGF  308 (319)
T ss_dssp             HHHHHHHTT---CCSEEEEECCTTC
T ss_pred             HHHHHHHhh---CCCCEEEECCCCC
Confidence            777766654   6789999987653

>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*

Probab=99.28  E-value=1.8e-10  Score=120.44  Aligned_cols=260  Identities=15%  Similarity=0.110  Sum_probs=157.7

Q ss_pred             eEEEEecCCCChhhHHHHHHHhcCCCCCCceEEEEEEeeecccchhhhhccc-Cccccc-cc---hhhhhhhhHHHHHHH
Q 038269          446 QILLCLHGSQNITSTLNFLEISRGTANPGVAVYVTDMIELTDQIAATLVQNE-GIDTVT-VT---DKAVMEMREEITTAV  520 (792)
Q Consensus       446 rILvcv~~~~~~~~li~l~~~~~~~~~sp~~v~~lhLvel~~r~~~~~~~~~-~~~~~~-~~---~~~~~~~~~~i~~af  520 (792)
                      |||+|+...++....++.+..++...  ...++++|+++......+-..... ..+... ..   .+...+..++.++.+
T Consensus         2 ~ILv~vD~s~~s~~al~~A~~lA~~~--~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   79 (268)
T 3ab8_A            2 RILLATDGSPQARGAEALAEWLAYKL--SAPLTVLFVVDTRLARIPELLDFGALTVPVPVLRTELERALALRGEAVLERV   79 (268)
T ss_dssp             CEEEECCSCGGGHHHHHHHHHHHHHH--TCCEEEEEEEEHHHHTHHHHC-------CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cEEEEcCCCHHHHHHHHHHHHHHHHh--CCcEEEEEEeccCCcccccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            69999988888888888888877542  357999999875431100000000 000000 00   001112234444444


Q ss_pred             HHhhhccCcceEEEEeEeecCCCChhHHHHHHHhhcCCcEEEecCCCCc-cCCCccccCCcchhHHHHHHhhhCCCceEE
Q 038269          521 QSYVDENGGGITLKRMLALSTFSGMPQDICILAEDLMVSLIILPFHKRQ-LEDGTLDEGHPGFRYVNRKLLRNATCSVGI  599 (792)
Q Consensus       521 ~~~~~~~~~~v~v~~~t~vs~~~~m~~dI~~~a~e~~~~liilp~h~~~-~~~g~~~~~~~~~~~~n~~vl~~apCsVgI  599 (792)
                      ....+.  .++.++.... .  .+..+.|++.  +.++|+|++|.|.+. ...      ...++++-+++++++||+|-|
T Consensus        80 ~~~~~~--~g~~~~~~~~-~--g~~~~~I~~~--~~~~dliV~G~~g~~~~~~------~~~~Gs~~~~v~~~a~~PVlv  146 (268)
T 3ab8_A           80 RQSALA--AGVAVEAVLE-E--GVPHEAILRR--ARAADLLVLGRSGEAHGDG------FGGLGSTADRVLRASPVPVLL  146 (268)
T ss_dssp             HHHHHH--TTCCEEEEEE-E--ECHHHHHHHH--HTTCSEEEEESSCTTSCTT------CCSCCHHHHHHHHHCSSCEEE
T ss_pred             HHHHHh--CCCCeEEEEe-c--CCHHHHHHhh--ccCCCEEEEeccCCCcccc------ccccchhHHHHHHhCCCCEEE
Confidence            443332  2466665544 2  5789999998  889999999998653 222      224678889999999999844


Q ss_pred             EecCCCCCccccccccccceeEEEEeccCcChHHHHHHHHHHhcCCCeEEEEEEeeecCCCCcccccccccCCcchhhhh
Q 038269          600 LVDRGFGSIENISRSQAASLNVAVIFIGGKDDREALAYASRVARHPAVKLTVIRFLLDNSENPQRRAATYKDNTAELEEE  679 (792)
Q Consensus       600 lVdrg~~~~~~~~~~~~~~~~v~v~f~GG~ddreAL~~a~rma~~~~v~ltv~r~~~~~~~~~~~~~~~~~~~~~~~~~~  679 (792)
                       |.++..          ...+|++++-|.++++.|+++|.++++..+.+++++++....                 ++.+
T Consensus       147 -v~~~~~----------~~~~ilv~~d~s~~~~~al~~a~~la~~~~a~l~ll~v~~~~-----------------~~~~  198 (268)
T 3ab8_A          147 -APGEPV----------ELEGALLGYDASESAVRALHALAPLARALGLGVRVVSVHEDP-----------------ARAE  198 (268)
T ss_dssp             -ECSSCC----------CCCEEEEECCSCHHHHHHHHHHHHHHHHHTCCEEEEEECSSH-----------------HHHH
T ss_pred             -ECCCCC----------CCCEEEEEECCCHHHHHHHHHHHHhhhcCCCEEEEEEEcCcH-----------------HHHH
Confidence             543211          235899999999999999999999999999999999986421                 1111


Q ss_pred             hhhhHHHHHHHHHhhcCCCcEEEEEEecCChHHHHHHHHhhhcCccEEEEecCCCCCcccccCCcccCCCCccchhhhhh
Q 038269          680 MKIDDECFAEFYERQVAEGHVAYAEKHLANSSETFATLRSLEGQYALIIVGRGERANSILTVGMNDWQQCPELGPIGDVL  759 (792)
Q Consensus       680 ~~~d~~~l~e~~~~~~~~~~v~y~e~~v~~~~e~~~~i~~~~~~~dL~iVGr~~~~~s~~~~gl~~w~e~~eLG~iGd~l  759 (792)
                      +. -+++.+.+ .++  +-++.+  . +.+| +..+.|.+..+++||+++|+          |+.+|    =+|-+.+-+
T Consensus       199 ~~-l~~~~~~l-~~~--~~~~~~--~-~~~g-~~~~~i~~~a~~~dliV~G~----------~~~~~----~~Gs~~~~v  256 (268)
T 3ab8_A          199 AW-ALEAEAYL-RDH--GVEASA--L-VLGG-DAADHLLRLQGPGDLLALGA----------PVRRL----VFGSTAERV  256 (268)
T ss_dssp             HH-HHHHHHHH-HHT--TCCEEE--E-EECS-CHHHHHHHHCCTTEEEEEEC----------CCSCC----SSCCHHHHH
T ss_pred             HH-HHHHHHHH-HHc--CCceEE--E-EeCC-ChHHHHHHHHHhCCEEEECC----------ccccc----EeccHHHHH
Confidence            11 12233333 221  223432  2 2334 45566666666679999999          22232    256666655


Q ss_pred             hcCCCCCceeEEEE
Q 038269          760 SGSDFLVRTSVLII  773 (792)
Q Consensus       760 as~d~~~~~SvLvv  773 (792)
                      ...   +++.||||
T Consensus       257 l~~---~~~pvlvv  267 (268)
T 3ab8_A          257 IRN---AQGPVLTA  267 (268)
T ss_dssp             HHH---CSSCEEEE
T ss_pred             Hhc---CCCCEEEe
Confidence            553   45678887

>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*

Probab=99.23  E-value=5e-10  Score=119.84  Aligned_cols=281  Identities=14%  Similarity=0.144  Sum_probs=163.9

Q ss_pred             ceEEEEecCCCChhhHHHHHHHhcCCCCCCceEEEEEEeeecccchhhhhcccCccccccchhhhhhhhHHHHHHHH-Hh
Q 038269          445 LQILLCLHGSQNITSTLNFLEISRGTANPGVAVYVTDMIELTDQIAATLVQNEGIDTVTVTDKAVMEMREEITTAVQ-SY  523 (792)
Q Consensus       445 lrILvcv~~~~~~~~li~l~~~~~~~~~sp~~v~~lhLvel~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~-~~  523 (792)
                      -+||+++...+.....++.+..++...  ...++++|+++ +.... .  ....... ...+ ...+..++.++.+. .+
T Consensus        20 ~~ILv~~D~s~~s~~al~~A~~lA~~~--~a~l~ll~v~~-~~~~~-~--~~~~~~~-~~~~-~~~~~~~~~l~~~~~~~   91 (309)
T 3cis_A           20 LGIIVGIDDSPAAQVAVRWAARDAELR--KIPLTLVHAVS-PEVAT-W--LEVPLPP-GVLR-WQQDHGRHLIDDALKVV   91 (309)
T ss_dssp             TEEEEECCSSHHHHHHHHHHHHHHHHH--TCCEEEEEECC-CCCCC-T--TCCCCCH-HHHH-HHHHHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCHHHHHHHHHHHHHHHhc--CCcEEEEEEec-Ccccc-c--ccCCCCc-hhhH-HHHHHHHHHHHHHHHHH
Confidence            489999988888888888887777532  35799999987 22111 0  0000000 0000 11122333443332 23


Q ss_pred             hhcc--CcceEEEEeEeecCCCChhHHHHHHHhhcCCcEEEecCCCCccCCCccccCCcchhHHHHHHhhhCCCceEEEe
Q 038269          524 VDEN--GGGITLKRMLALSTFSGMPQDICILAEDLMVSLIILPFHKRQLEDGTLDEGHPGFRYVNRKLLRNATCSVGILV  601 (792)
Q Consensus       524 ~~~~--~~~v~v~~~t~vs~~~~m~~dI~~~a~e~~~~liilp~h~~~~~~g~~~~~~~~~~~~n~~vl~~apCsVgIlV  601 (792)
                      .+..  ..++.++.... .  .+..+.|++.|+  ++|+|++|.|.+....      ...++++-+++++++||+|-| |
T Consensus        92 ~~~~~~~~~~~~~~~~~-~--g~~~~~I~~~a~--~~DliV~G~~g~~~~~------~~~~Gs~~~~vl~~~~~PVlv-v  159 (309)
T 3cis_A           92 EQASLRAGPPTVHSEIV-P--AAAVPTLVDMSK--DAVLMVVGCLGSGRWP------GRLLGSVSSGLLRHAHCPVVI-I  159 (309)
T ss_dssp             HHHCSSSCCSCEEEEEE-S--SCHHHHHHHHGG--GEEEEEEESSCTTCCT------TCCSCHHHHHHHHHCSSCEEE-E
T ss_pred             HHhcccCCCceEEEEEe-c--CCHHHHHHHHhc--CCCEEEECCCCCcccc------ccccCcHHHHHHHhCCCCEEE-E
Confidence            2210  11466665543 2  678999999996  8999999998653322      224678889999999999854 4


Q ss_pred             cCCCCCccccccccccceeEEEEeccCcChHHHHHHHHHHhcCCCeEEEEEEeeecCCCCcccccccccCCcchhhhhhh
Q 038269          602 DRGFGSIENISRSQAASLNVAVIFIGGKDDREALAYASRVARHPAVKLTVIRFLLDNSENPQRRAATYKDNTAELEEEMK  681 (792)
Q Consensus       602 drg~~~~~~~~~~~~~~~~v~v~f~GG~ddreAL~~a~rma~~~~v~ltv~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~  681 (792)
                      .......     ......+|++++=|.+.++.|+++|.++++..+.+++++++........        ....+.+..++
T Consensus       160 ~~~~~~~-----~~~~~~~Ilv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~--------~~~~~~~~~~~  226 (309)
T 3cis_A          160 HDEDSVM-----PHPQQAPVLVGVDGSSASELATAIAFDEASRRNVDLVALHAWSDVDVSE--------WPGIDWPATQS  226 (309)
T ss_dssp             CTTCCCS-----CSSCCCCEEEECCSSHHHHHHHHHHHHHHHHTTCCEEEEEESCSSCCTT--------CSSCCHHHHHH
T ss_pred             cCCcccC-----CCCCCCeEEEEeCCChHHHHHHHHHHHHHHhcCCEEEEEEEeecccccC--------CCcccHHHHHH
Confidence            3321100     0122358999999999999999999999999999999999975432100        00000011111


Q ss_pred             hhHHHHHHHHHhhc---CCCcEEEEEEecCChHHHHHHHHhhhcCccEEEEecCCCCCcccccCCcccCCCCccchhhhh
Q 038269          682 IDDECFAEFYERQV---AEGHVAYAEKHLANSSETFATLRSLEGQYALIIVGRGERANSILTVGMNDWQQCPELGPIGDV  758 (792)
Q Consensus       682 ~d~~~l~e~~~~~~---~~~~v~y~e~~v~~~~e~~~~i~~~~~~~dL~iVGr~~~~~s~~~~gl~~w~e~~eLG~iGd~  758 (792)
                      ..++.++++.....   .+-++.+.   +..| +....|.+.+++.||+++|+++..      ++.+|    =+|-+-+-
T Consensus       227 ~~~~~l~~~~~~~~~~~~~~~~~~~---~~~g-~~~~~I~~~a~~adliV~G~~~~~------~~~~~----l~Gsv~~~  292 (309)
T 3cis_A          227 MAEQVLAERLAGWQERYPNVAITRV---VVRD-QPARQLVQRSEEAQLVVVGSRGRG------GYAGM----LVGSVGET  292 (309)
T ss_dssp             HHHHHHHHHHTTHHHHCTTSCEEEE---EESS-CHHHHHHHHHTTCSEEEEESSCSS------CCTTC----SSCHHHHH
T ss_pred             HHHHHHHHHHHHHHhhCCCCcEEEE---EEcC-CHHHHHHHhhCCCCEEEECCCCCC------Ccccc----ccCcHHHH
Confidence            12233333322111   12234332   2334 345556556558999999997531      22222    25777776


Q ss_pred             hhcCCCCCceeEEEEee
Q 038269          759 LSGSDFLVRTSVLIIKQ  775 (792)
Q Consensus       759 las~d~~~~~SvLvvqq  775 (792)
                      +...   +++.||||..
T Consensus       293 vl~~---~~~pVlvv~~  306 (309)
T 3cis_A          293 VAQL---ARTPVIVARE  306 (309)
T ss_dssp             HHHH---CSSCEEEECC
T ss_pred             HHhc---CCCCEEEeCC
Confidence            6653   5679999964

>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0

Probab=98.16  E-value=1.2e-05  Score=75.17  Aligned_cols=137  Identities=12%  Similarity=0.076  Sum_probs=87.7

Q ss_pred             ceEEEEecCCCChhhHHHHHHHhcCCCCCCceEEEEEEeeecccchhhhhcccCccccccchhhhhhhhHHHHHHHHHhh
Q 038269          445 LQILLCLHGSQNITSTLNFLEISRGTANPGVAVYVTDMIELTDQIAATLVQNEGIDTVTVTDKAVMEMREEITTAVQSYV  524 (792)
Q Consensus       445 lrILvcv~~~~~~~~li~l~~~~~~~~~sp~~v~~lhLvel~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~  524 (792)
                      -|||+++...++....++.+..++..  ....++++|+++.........-. .   .....+ ...+..++.++.+....
T Consensus         6 ~~ILv~~D~s~~s~~al~~A~~la~~--~~a~l~ll~v~~~~~~~~~~~~~-~---~~~~~~-~~~~~~~~~l~~~~~~~   78 (146)
T 3s3t_A            6 TNILVPVDSSDAAQAAFTEAVNIAQR--HQANLTALYVVDDSAYHTPALDP-V---LSELLD-AEAAHAKDAMRQRQQFV   78 (146)
T ss_dssp             CEEEEECCSSHHHHHHHHHHHHHHHH--HTCEEEEEEEEECCCCCCGGGHH-H---HHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred             ceEEEEcCCCHHHHHHHHHHHHHHHh--cCCEEEEEEEecCcccccccccc-c---cHHHHH-HHHHHHHHHHHHHHHHH
Confidence            37999998888888888888877754  24579999999865432211000 0   000000 11122344444444433


Q ss_pred             hccCcce-EEEEeEeecCCCChhHHHHH-HHhhcCCcEEEecCCCCccCCCccccCCcchhHHHHHHhhhCCCceEE
Q 038269          525 DENGGGI-TLKRMLALSTFSGMPQDICI-LAEDLMVSLIILPFHKRQLEDGTLDEGHPGFRYVNRKLLRNATCSVGI  599 (792)
Q Consensus       525 ~~~~~~v-~v~~~t~vs~~~~m~~dI~~-~a~e~~~~liilp~h~~~~~~g~~~~~~~~~~~~n~~vl~~apCsVgI  599 (792)
                      +  ..++ .++.....   .+..+.|++ .|++.++|+|++|.|.+....      ...++++-++|++++||+|-|
T Consensus        79 ~--~~g~~~~~~~~~~---g~~~~~I~~~~a~~~~~dliV~G~~~~~~~~------~~~~Gs~~~~vl~~~~~pVlv  144 (146)
T 3s3t_A           79 A--TTSAPNLKTEISY---GIPKHTIEDYAKQHPEIDLIVLGATGTNSPH------RVAVGSTTSYVVDHAPCNVIV  144 (146)
T ss_dssp             T--TSSCCCCEEEEEE---ECHHHHHHHHHHHSTTCCEEEEESCCSSCTT------TCSSCHHHHHHHHHCSSEEEE
T ss_pred             H--hcCCcceEEEEec---CChHHHHHHHHHhhcCCCEEEECCCCCCCcc------eEEEcchHHHHhccCCCCEEE
Confidence            3  2346 55555443   468999999 999999999999998654332      224678889999999999854

>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A*

Probab=98.15  E-value=1.6e-05  Score=74.00  Aligned_cols=137  Identities=18%  Similarity=0.125  Sum_probs=85.3

Q ss_pred             ceEEEEecCCCC--hhhHHHHHHHhcCCCCCCceEEEEEEeeecccchhhhhcccCccccccchhhhhhhhHHHHHHHHH
Q 038269          445 LQILLCLHGSQN--ITSTLNFLEISRGTANPGVAVYVTDMIELTDQIAATLVQNEGIDTVTVTDKAVMEMREEITTAVQS  522 (792)
Q Consensus       445 lrILvcv~~~~~--~~~li~l~~~~~~~~~sp~~v~~lhLvel~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~  522 (792)
                      -|||+|+...++  ....++.+..++..  ....++++|+++.............   .   ......+..++..+.++.
T Consensus         2 k~ILv~vD~s~~~~s~~al~~a~~la~~--~~a~l~ll~v~~~~~~~~~~~~~~~---~---~~~~~~~~~~~~~~~l~~   73 (143)
T 3fdx_A            2 NAILVPIDISDKEFTERIISHVESEARI--DDAEVHFLTVIPSLPYYASLGMAYT---A---ELPGMDELREGSETQLKE   73 (143)
T ss_dssp             CEEEEECCTTCSSCCTTHHHHHHHHHHH--HTCEEEEEEEECC----------------------CHHHHHHHHHHHHHH
T ss_pred             CEEEEEecCChHhhHHHHHHHHHHHHHh--cCCeEEEEEEecCCccccccccccc---c---hhhhHHHHHHHHHHHHHH
Confidence            379999987777  77777877777643  2357999999986532211100000   0   000111233555566666


Q ss_pred             hhhccC-cceEEEEeEeecCCCChhHHHHHHHhhcCCcEEEecCCCCccCCCccccCCcchhHHHHHHhhhCCCceEE
Q 038269          523 YVDENG-GGITLKRMLALSTFSGMPQDICILAEDLMVSLIILPFHKRQLEDGTLDEGHPGFRYVNRKLLRNATCSVGI  599 (792)
Q Consensus       523 ~~~~~~-~~v~v~~~t~vs~~~~m~~dI~~~a~e~~~~liilp~h~~~~~~g~~~~~~~~~~~~n~~vl~~apCsVgI  599 (792)
                      +.++.+ .++.++.....   .+..+.|++.|++.++|+|+||.|+ ....      ...++++-++|++++||+|-|
T Consensus        74 ~~~~~~~~~~~v~~~~~~---g~~~~~I~~~a~~~~~dliV~G~~~-~~~~------~~~~Gs~~~~v~~~~~~pVlv  141 (143)
T 3fdx_A           74 IAKKFSIPEDRMHFHVAE---GSPKDKILALAKSLPADLVIIASHR-PDIT------TYLLGSNAAAVVRHAECSVLV  141 (143)
T ss_dssp             HHTTSCCCGGGEEEEEEE---SCHHHHHHHHHHHTTCSEEEEESSC-TTCC------SCSSCHHHHHHHHHCSSEEEE
T ss_pred             HHHHcCCCCCceEEEEEe---cChHHHHHHHHHHhCCCEEEEeCCC-CCCe------eeeeccHHHHHHHhCCCCEEE
Confidence            655432 23445544443   4789999999999999999999983 2221      234788889999999999854

>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A*

Probab=98.15  E-value=8.9e-06  Score=77.36  Aligned_cols=128  Identities=20%  Similarity=0.217  Sum_probs=85.6

Q ss_pred             ceEEEEecC-CCChhhHHHHHHHhcCCCCCCceEEEEEEeeecccchhhhhcccCccccccchhhhhhhhHHHHHHHHHh
Q 038269          445 LQILLCLHG-SQNITSTLNFLEISRGTANPGVAVYVTDMIELTDQIAATLVQNEGIDTVTVTDKAVMEMREEITTAVQSY  523 (792)
Q Consensus       445 lrILvcv~~-~~~~~~li~l~~~~~~~~~sp~~v~~lhLvel~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~  523 (792)
                      -|||+++.. .+.....++.+..++...  ...++++|+++......               + ...+..++.++.+...
T Consensus        25 ~~ILv~vD~~s~~s~~al~~A~~la~~~--~a~l~llhV~~~~~~~~---------------~-~~~~~~~~~l~~~~~~   86 (155)
T 3dlo_A           25 MPIVVAVDKKSDRAERVLRFAAEEARLR--GVPVYVVHSLPGGGRTK---------------D-EDIIEAKETLSWAVSI   86 (155)
T ss_dssp             CCEEEECCSSSHHHHHHHHHHHHHHHHH--TCCEEEEEEECCSTTSC---------------H-HHHHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCHHHHHHHHHHHHHHHhc--CCEEEEEEEEcCCCccc---------------H-HHHHHHHHHHHHHHHH
Confidence            379999988 788888888888877542  35699999988442110               0 1112234444444333


Q ss_pred             hhccCcceEEEEeEeecCCCChhHHHHHHHhhcCCcEEEecCCCCccCCCccccCCcchhHHHHHHhhhCCCceEE
Q 038269          524 VDENGGGITLKRMLALSTFSGMPQDICILAEDLMVSLIILPFHKRQLEDGTLDEGHPGFRYVNRKLLRNATCSVGI  599 (792)
Q Consensus       524 ~~~~~~~v~v~~~t~vs~~~~m~~dI~~~a~e~~~~liilp~h~~~~~~g~~~~~~~~~~~~n~~vl~~apCsVgI  599 (792)
                      .+.  .++.++..+.+. ..+..+.|++.|++.++|+|++|.|.+....      ...++++-++|++++||+|-|
T Consensus        87 ~~~--~g~~~~~~~~v~-~G~~~~~I~~~a~~~~~DLIV~G~~g~~~~~------~~~lGSv~~~vl~~a~~PVLv  153 (155)
T 3dlo_A           87 IRK--EGAEGEEHLLVR-GKEPPDDIVDFADEVDAIAIVIGIRKRSPTG------KLIFGSVARDVILKANKPVIC  153 (155)
T ss_dssp             HHH--TTCCEEEEEEES-SSCHHHHHHHHHHHTTCSEEEEECCEECTTS------CEECCHHHHHHHHHCSSCEEE
T ss_pred             HHh--cCCCceEEEEec-CCCHHHHHHHHHHHcCCCEEEECCCCCCCCC------CEEeccHHHHHHHhCCCCEEE
Confidence            332  235555444342 2578999999999999999999998653322      224778889999999999854

>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0

Probab=98.13  E-value=8.1e-06  Score=76.28  Aligned_cols=140  Identities=15%  Similarity=0.215  Sum_probs=86.4

Q ss_pred             eEEEEecCCCChhhHHHHHHHhcCCCCCCceEEEEEEeeecccchhhhhcccCccccccchhhhhhhhHHHHHHHHHhhh
Q 038269          446 QILLCLHGSQNITSTLNFLEISRGTANPGVAVYVTDMIELTDQIAATLVQNEGIDTVTVTDKAVMEMREEITTAVQSYVD  525 (792)
Q Consensus       446 rILvcv~~~~~~~~li~l~~~~~~~~~sp~~v~~lhLvel~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~  525 (792)
                      |||+++...++....++.+..++...  ...++++|+++.......... ...........+...+..++.++.+....+
T Consensus         4 ~ILv~vD~s~~s~~al~~A~~la~~~--~a~l~ll~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~   80 (147)
T 3hgm_A            4 RIMVPVDGSKGAVKALEKGVGLQQLT--GAELYILCVFKHHSLLEASLS-MARPEQLDIPDDALKDYATEIAVQAKTRAT   80 (147)
T ss_dssp             EEEEECCSBHHHHHHHHHHHHHHHHH--CCEEEEEEEECCHHHHHHTBS-SCCCGGGCCCTTHHHHHHHHHHHHHHHHHH
T ss_pred             eEEEEeCCCHHHHHHHHHHHHHHHhc--CCEEEEEEEecCccccccccc-ccChhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            79999988777888888887776542  467999999986531111100 000000000011112234455555544433


Q ss_pred             ccCcceEE---EEeEeecCCCChhHHHHHHHhhcCCcEEEecCCCCccCCCccccCCcchhHHHHHHhhhCCCceEE
Q 038269          526 ENGGGITL---KRMLALSTFSGMPQDICILAEDLMVSLIILPFHKRQLEDGTLDEGHPGFRYVNRKLLRNATCSVGI  599 (792)
Q Consensus       526 ~~~~~v~v---~~~t~vs~~~~m~~dI~~~a~e~~~~liilp~h~~~~~~g~~~~~~~~~~~~n~~vl~~apCsVgI  599 (792)
                      .  .++.+   +.....   .+..+.|++.|++.++|+|++|.|.+....      ...++++-++|++++||+|-|
T Consensus        81 ~--~g~~~~~~~~~~~~---g~~~~~I~~~a~~~~~dliV~G~~~~~~~~------~~~~Gs~~~~vl~~~~~pVlv  146 (147)
T 3hgm_A           81 E--LGVPADKVRAFVKG---GRPSRTIVRFARKRECDLVVIGAQGTNGDK------SLLLGSVAQRVAGSAHCPVLV  146 (147)
T ss_dssp             H--TTCCGGGEEEEEEE---SCHHHHHHHHHHHTTCSEEEECSSCTTCCS------CCCCCHHHHHHHHHCSSCEEE
T ss_pred             h--cCCCccceEEEEec---CCHHHHHHHHHHHhCCCEEEEeCCCCcccc------ceeeccHHHHHHhhCCCCEEE
Confidence            2  23444   433332   578999999999999999999998654332      234678889999999999854

>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum}

Probab=98.04  E-value=9.5e-06  Score=76.90  Aligned_cols=135  Identities=12%  Similarity=0.123  Sum_probs=86.3

Q ss_pred             ceEEEEec--CCCChhhHHHHHHHhcCCCCCCceEEEEEEeeecccchhhhhcccCccccccchhhhhhhhHHHHHHHHH
Q 038269          445 LQILLCLH--GSQNITSTLNFLEISRGTANPGVAVYVTDMIELTDQIAATLVQNEGIDTVTVTDKAVMEMREEITTAVQS  522 (792)
Q Consensus       445 lrILvcv~--~~~~~~~li~l~~~~~~~~~sp~~v~~lhLvel~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~  522 (792)
                      -|||+|+.  ..+.....++.+..++..  ....++++|+++.......     .... ... .....+..++.++.+..
T Consensus        16 ~~ILv~vD~~~s~~s~~al~~a~~la~~--~~a~l~ll~v~~~~~~~~~-----~~~~-~~~-~~~~~~~~~~~l~~~~~   86 (156)
T 3fg9_A           16 RRILLTVDEDDNTSSERAFRYATTLAHD--YDVPLGICSVLESEDINIF-----DSLT-PSK-IQAKRKHVEDVVAEYVQ   86 (156)
T ss_dssp             C-EEEECCSCCCHHHHHHHHHHHHHHHH--HTCCEEEEEEECCCCTTCC-----CSSH-HHH-HHHHHHHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCHHHHHHHHHHHHHHHh--cCCEEEEEEEEeCCCcccc-----ccCC-HHH-HHHHHHHHHHHHHHHHH
Confidence            37999998  888888888888877754  2357999999886532110     0000 000 00111223444444433


Q ss_pred             hhhccCcce-EEEEeEeecCCCChhHHHHHH-HhhcCCcEEEecCCCCccCCCccccCCcchhHHHHHHhhhCCCceEE
Q 038269          523 YVDENGGGI-TLKRMLALSTFSGMPQDICIL-AEDLMVSLIILPFHKRQLEDGTLDEGHPGFRYVNRKLLRNATCSVGI  599 (792)
Q Consensus       523 ~~~~~~~~v-~v~~~t~vs~~~~m~~dI~~~-a~e~~~~liilp~h~~~~~~g~~~~~~~~~~~~n~~vl~~apCsVgI  599 (792)
                      ..+.  .++ .++.....+  .+..+.|++. |++.++|+|++|.|.+....       ..++++-++|++++||+|-|
T Consensus        87 ~~~~--~g~~~~~~~v~~~--g~~~~~I~~~~a~~~~~DlIV~G~~g~~~~~-------~~~Gs~~~~vl~~a~~PVlv  154 (156)
T 3fg9_A           87 LAEQ--RGVNQVEPLVYEG--GDVDDVILEQVIPEFKPDLLVTGADTEFPHS-------KIAGAIGPRLARKAPISVIV  154 (156)
T ss_dssp             HHHH--HTCSSEEEEEEEC--SCHHHHHHHTHHHHHCCSEEEEETTCCCTTS-------SSCSCHHHHHHHHCSSEEEE
T ss_pred             HHHH--cCCCceEEEEEeC--CCHHHHHHHHHHHhcCCCEEEECCCCCCccc-------eeecchHHHHHHhCCCCEEE
Confidence            3322  245 356555553  5789999999 99999999999998654332       23677789999999999854

>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4

Probab=98.04  E-value=4.7e-05  Score=72.42  Aligned_cols=141  Identities=15%  Similarity=0.165  Sum_probs=86.4

Q ss_pred             ceEEEEecCCCChhhHHHHHHHhcCCCCCCceEEEEEEeeecc----cchhhhhcccC--c-ccc----ccchhhhhhhh
Q 038269          445 LQILLCLHGSQNITSTLNFLEISRGTANPGVAVYVTDMIELTD----QIAATLVQNEG--I-DTV----TVTDKAVMEMR  513 (792)
Q Consensus       445 lrILvcv~~~~~~~~li~l~~~~~~~~~sp~~v~~lhLvel~~----r~~~~~~~~~~--~-~~~----~~~~~~~~~~~  513 (792)
                      -|||+++...++....++.+..++..  ....++++|+++...    ...+.  ..+.  . ...    ........+..
T Consensus         6 ~~ILv~vD~s~~s~~al~~a~~la~~--~~a~l~ll~v~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (162)
T 1mjh_A            6 KKILYPTDFSETAEIALKHVKAFKTL--KAEEVILLHVIDEREIKKRDIFSL--LLGVAGLNKSVEEFENELKNKLTEEA   81 (162)
T ss_dssp             CEEEEECCSCHHHHHHHHHHHHTCCS--SCCEEEEEEEEEGGGTC-------------------CHHHHHHHHHHHHHHH
T ss_pred             ceEEEEeCCCHHHHHHHHHHHHHHhh--cCCeEEEEEEecCccccccccccc--cccccccccchhhhHHHHHHHHHHHH
Confidence            37999998888888888888888754  346899999987431    00000  0000  0 000    00000111223


Q ss_pred             HHHHHHHHHhhhccCcceEEEEeEeecCCCChhHHHHHHHhhcCCcEEEecCCCCccCCCccccCCcchhHHHHHHhhhC
Q 038269          514 EEITTAVQSYVDENGGGITLKRMLALSTFSGMPQDICILAEDLMVSLIILPFHKRQLEDGTLDEGHPGFRYVNRKLLRNA  593 (792)
Q Consensus       514 ~~i~~af~~~~~~~~~~v~v~~~t~vs~~~~m~~dI~~~a~e~~~~liilp~h~~~~~~g~~~~~~~~~~~~n~~vl~~a  593 (792)
                      ++.++.+....+  ..++.++..+..   .+..+.|++.|++.++|+|++|.|.+....      ...++++-++|++++
T Consensus        82 ~~~l~~~~~~~~--~~g~~~~~~v~~---G~~~~~I~~~a~~~~~dlIV~G~~g~~~~~------~~~~GSv~~~vl~~~  150 (162)
T 1mjh_A           82 KNKMENIKKELE--DVGFKVKDIIVV---GIPHEEIVKIAEDEGVDIIIMGSHGKTNLK------EILLGSVTENVIKKS  150 (162)
T ss_dssp             HHHHHHHHHHHH--HTTCEEEEEEEE---ECHHHHHHHHHHHTTCSEEEEESCCSSCCT------TCSSCHHHHHHHHHC
T ss_pred             HHHHHHHHHHHH--HcCCceEEEEcC---CCHHHHHHHHHHHcCCCEEEEcCCCCCCcc------ceEecchHHHHHHhC
Confidence            334443333222  134666655433   578999999999999999999999654322      234778889999999


Q ss_pred             CCceEEE
Q 038269          594 TCSVGIL  600 (792)
Q Consensus       594 pCsVgIl  600 (792)
                      ||+|-|+
T Consensus       151 ~~pVlvv  157 (162)
T 1mjh_A          151 NKPVLVV  157 (162)
T ss_dssp             CSCEEEE
T ss_pred             CCCEEEE
Confidence            9998553

>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes}

Probab=98.01  E-value=4.5e-05  Score=70.41  Aligned_cols=132  Identities=8%  Similarity=0.067  Sum_probs=84.8

Q ss_pred             eEEEEecCCCChhhHHHHHHHhc-CCCCCCceEEEEEEeeecccchhhhhcccCccccccchhhhh-hhhHHHHHHHHHh
Q 038269          446 QILLCLHGSQNITSTLNFLEISR-GTANPGVAVYVTDMIELTDQIAATLVQNEGIDTVTVTDKAVM-EMREEITTAVQSY  523 (792)
Q Consensus       446 rILvcv~~~~~~~~li~l~~~~~-~~~~sp~~v~~lhLvel~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~af~~~  523 (792)
                      |||+++...++....++.+..++ ..  ....++++|+++.............     ...+ ... +..++.++.+...
T Consensus         3 ~ILv~~D~s~~s~~al~~a~~la~~~--~~a~l~ll~v~~~~~~~~~~~~~~~-----~~~~-~~~~~~~~~~l~~~~~~   74 (138)
T 3idf_A            3 KLLFAIDDTEACERAAQYILDMFGKD--ADCTLTLIHVKPEFMLYGEAVLAAY-----DEIE-MKEEEKAKLLTQKFSTF   74 (138)
T ss_dssp             EEEEECCSSHHHHHHHHHHHHHHTTC--TTEEEEEEEEECCCCCCHHHHHHHH-----HHHH-HHHHHHHHHHHHHHHHH
T ss_pred             eEEEEeCCCHHHHHHHHHHHHHhccC--CCCEEEEEEEecCCCcccccccCcH-----HHHH-HHHHHHHHHHHHHHHHH
Confidence            79999988888888889888888 54  3478999999986543221100000     0000 111 2234444444444


Q ss_pred             hhccCcceEEEEeEeecCCCChhHHHHHHHhhcCCcEEEecCCCCccCCCccccCCcchhHHHHHHhhhCCCceEE
Q 038269          524 VDENGGGITLKRMLALSTFSGMPQDICILAEDLMVSLIILPFHKRQLEDGTLDEGHPGFRYVNRKLLRNATCSVGI  599 (792)
Q Consensus       524 ~~~~~~~v~v~~~t~vs~~~~m~~dI~~~a~e~~~~liilp~h~~~~~~g~~~~~~~~~~~~n~~vl~~apCsVgI  599 (792)
                      .+  ..++.++.....   .+..+.|++.|+  ++|+|++|.|++....+.+       +++-++|++++||+|-|
T Consensus        75 ~~--~~g~~~~~~v~~---g~~~~~I~~~a~--~~dliV~G~~~~~~~~~~~-------Gs~~~~vl~~~~~pVlv  136 (138)
T 3idf_A           75 FT--EKGINPFVVIKE---GEPVEMVLEEAK--DYNLLIIGSSENSFLNKIF-------ASHQDDFIQKAPIPVLI  136 (138)
T ss_dssp             HH--TTTCCCEEEEEE---SCHHHHHHHHHT--TCSEEEEECCTTSTTSSCC-------CCTTCHHHHHCSSCEEE
T ss_pred             HH--HCCCCeEEEEec---CChHHHHHHHHh--cCCEEEEeCCCcchHHHHh-------CcHHHHHHhcCCCCEEE
Confidence            33  234666655443   468999999999  9999999999765443323       33346999999999854

>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii}

Probab=97.99  E-value=5.4e-05  Score=72.73  Aligned_cols=141  Identities=16%  Similarity=0.069  Sum_probs=84.7

Q ss_pred             eEEEEecCCCChhhHHHHHHHhcCCCCCCceEEEEEEeeecccchhh-hhcc----cCccccccchhhhhhhhHHHHHHH
Q 038269          446 QILLCLHGSQNITSTLNFLEISRGTANPGVAVYVTDMIELTDQIAAT-LVQN----EGIDTVTVTDKAVMEMREEITTAV  520 (792)
Q Consensus       446 rILvcv~~~~~~~~li~l~~~~~~~~~sp~~v~~lhLvel~~r~~~~-~~~~----~~~~~~~~~~~~~~~~~~~i~~af  520 (792)
                      |||+++...++....++.+..++..  ....++++|+++........ -.+.    ........ .+...+..++.++.+
T Consensus         7 ~ILv~vD~s~~s~~al~~A~~la~~--~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~   83 (170)
T 2dum_A            7 KVLFPTDFSEGAYRAVEVFEKRNKM--EVGEVILLHVIDEGTLEELMDGYSFFYDNAEIELKDI-KEKLKEEASRKLQEK   83 (170)
T ss_dssp             EEEEECCSSHHHHHHHHHHHHHCCS--CCSEEEEEEEEETTGGGCCC------------CCTTS-HHHHHHHHHHHHHHH
T ss_pred             eEEEEecCCHHHHHHHHHHHHHHHh--cCCEEEEEEEecCccccccccccccccccccccHHHH-HHHHHHHHHHHHHHH
Confidence            7999998888888888888888764  34689999998743211000 0000    00000000 001112233444433


Q ss_pred             HHhhhccCcceEEEE--eEeecCCCChhHHHHHHHhhcCCcEEEecCCCCccCCCccccCCcchhHHHHHHhhhCCCceE
Q 038269          521 QSYVDENGGGITLKR--MLALSTFSGMPQDICILAEDLMVSLIILPFHKRQLEDGTLDEGHPGFRYVNRKLLRNATCSVG  598 (792)
Q Consensus       521 ~~~~~~~~~~v~v~~--~t~vs~~~~m~~dI~~~a~e~~~~liilp~h~~~~~~g~~~~~~~~~~~~n~~vl~~apCsVg  598 (792)
                      ....+.  .++.++.  ... .  .+..+.|++.|++.++|+|++|.|.+....      ...++++-++|++++||+|-
T Consensus        84 ~~~~~~--~g~~~~~~~~~~-~--g~~~~~I~~~a~~~~~DlIV~G~~g~~~~~------~~~~Gsv~~~vl~~~~~PVl  152 (170)
T 2dum_A           84 AEEVKR--AFRAKNVRTIIR-F--GIPWDEIVKVAEEENVSLIILPSRGKLSLS------HEFLGSTVMRVLRKTKKPVL  152 (170)
T ss_dssp             HHHHHH--HTTCSEEEEEEE-E--ECHHHHHHHHHHHTTCSEEEEESCCCCC--------TTCCCHHHHHHHHHCSSCEE
T ss_pred             HHHHHH--cCCceeeeeEEe-c--CChHHHHHHHHHHcCCCEEEECCCCCCccc------cceechHHHHHHHhCCCCEE
Confidence            332221  1344443  332 2  578999999999999999999998653322      23477888999999999985


Q ss_pred             EE
Q 038269          599 IL  600 (792)
Q Consensus       599 Il  600 (792)
                      |+
T Consensus       153 vv  154 (170)
T 2dum_A          153 II  154 (170)
T ss_dssp             EE
T ss_pred             EE
Confidence            54

>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A

Probab=97.91  E-value=2.6e-05  Score=72.00  Aligned_cols=131  Identities=15%  Similarity=0.090  Sum_probs=79.2

Q ss_pred             eEEEEecCCCChhhHHHHHHHhcCCCCCCceEEEEEEeeecccchhhhhcccCccccccchhhhhhhhHHHHHHHHHhhh
Q 038269          446 QILLCLHGSQNITSTLNFLEISRGTANPGVAVYVTDMIELTDQIAATLVQNEGIDTVTVTDKAVMEMREEITTAVQSYVD  525 (792)
Q Consensus       446 rILvcv~~~~~~~~li~l~~~~~~~~~sp~~v~~lhLvel~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~  525 (792)
                      |||+++...+.....++.+..++..  ....++++|+++-.. . +.    .........+ ...+..++   .++.+.+
T Consensus         4 ~ILv~~D~s~~s~~al~~a~~la~~--~~a~l~ll~v~~~~~-~-~~----~~~~~~~~~~-~~~~~~~~---~l~~~~~   71 (137)
T 2z08_A            4 TILLAYDGSEHARRAAEVAKAEAEA--HGARLIVVHAYEPVP-D-YL----GEPFFEEALR-RRLERAEG---VLEEARA   71 (137)
T ss_dssp             EEEEECCSSHHHHHHHHHHHHHHHH--HTCEEEEEEEECC--------------------C-HHHHHHHH---HHHHHHH
T ss_pred             eEEEEeCCCHHHHHHHHHHHHHHhh--cCCEEEEEEEecCCC-c-cc----cccchHHHHH-HHHHHHHH---HHHHHHH
Confidence            7999998877777788888777643  235799999987321 1 10    0000000000 11112233   3333332


Q ss_pred             ccCcce-EEEEeEeecCCCChhHHHHHHHhhcCCcEEEecCCCCccCCCccccCCcchhHHHHHHhhhCCCceEE
Q 038269          526 ENGGGI-TLKRMLALSTFSGMPQDICILAEDLMVSLIILPFHKRQLEDGTLDEGHPGFRYVNRKLLRNATCSVGI  599 (792)
Q Consensus       526 ~~~~~v-~v~~~t~vs~~~~m~~dI~~~a~e~~~~liilp~h~~~~~~g~~~~~~~~~~~~n~~vl~~apCsVgI  599 (792)
                      .  .++ .++.... .  .+..+.|++.|++.++|+|++|.|.+....      ...++++-++|++++||+|-|
T Consensus        72 ~--~g~~~~~~~~~-~--g~~~~~I~~~a~~~~~dliV~G~~~~~~~~------~~~~Gs~~~~vl~~~~~pVlv  135 (137)
T 2z08_A           72 L--TGVPKEDALLL-E--GVPAEAILQAARAEKADLIVMGTRGLGALG------SLFLGSQSQRVVAEAPCPVLL  135 (137)
T ss_dssp             H--HCCCGGGEEEE-E--SSHHHHHHHHHHHTTCSEEEEESSCTTCCS------CSSSCHHHHHHHHHCSSCEEE
T ss_pred             H--cCCCccEEEEE-e--cCHHHHHHHHHHHcCCCEEEECCCCCchhh------hhhhccHHHHHHhcCCCCEEE
Confidence            2  123 3333222 2  578999999999999999999999654322      224778889999999999855

>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A*

Probab=97.87  E-value=2.5e-05  Score=73.31  Aligned_cols=138  Identities=17%  Similarity=0.123  Sum_probs=78.1

Q ss_pred             ceEEEEecCCCChhhHHHHHHHhcCCCCCCceEEEEEEeeecccchhhhhcccCccccccchhhhhhhhHHHHHHHHHhh
Q 038269          445 LQILLCLHGSQNITSTLNFLEISRGTANPGVAVYVTDMIELTDQIAATLVQNEGIDTVTVTDKAVMEMREEITTAVQSYV  524 (792)
Q Consensus       445 lrILvcv~~~~~~~~li~l~~~~~~~~~sp~~v~~lhLvel~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~  524 (792)
                      -|||+|+...++....++.+..++..  ....++++|+++......+..-.......... .   .+..++..+.++.+.
T Consensus         7 ~~ILv~vD~s~~s~~al~~a~~la~~--~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~l~~~~   80 (150)
T 3tnj_A            7 HHILLAVDFSSEDSQVVQKVRNLASQ--IGARLSLIHVLDNIPMPDTPYGTAIPLDTETT-Y---DAMLDVEKQKLSQIG   80 (150)
T ss_dssp             SEEEEECCCSTTHHHHHHHHHHHHHH--HTCEEEEEEEEC--------CTTCCCSSSCCC-H---HHHHHHHHHHHHHHH
T ss_pred             ceEEEEeCCCHHHHHHHHHHHHHHhh--cCCEEEEEEEEcCccccccccccccCcCHHHH-H---HHHHHHHHHHHHHHH
Confidence            37999998888888888888888754  34679999998754321000000000000000 0   111222333444443


Q ss_pred             hccCcceE-EEEeEeecCCCChhHHHHHHHhhcCCcEEEecCCCCccCCCccccCCcchhHHHHHHhhhCCCceEEE
Q 038269          525 DENGGGIT-LKRMLALSTFSGMPQDICILAEDLMVSLIILPFHKRQLEDGTLDEGHPGFRYVNRKLLRNATCSVGIL  600 (792)
Q Consensus       525 ~~~~~~v~-v~~~t~vs~~~~m~~dI~~~a~e~~~~liilp~h~~~~~~g~~~~~~~~~~~~n~~vl~~apCsVgIl  600 (792)
                      ++.+  +. ++. ....  .+..+.|++.|++.++|+|++|.|.+....       ..++++-++|++++||+|-|+
T Consensus        81 ~~~~--~~~~~~-~~~~--g~~~~~I~~~a~~~~~dliV~G~~~~~~~~-------~~~Gs~~~~vl~~~~~pVlvv  145 (150)
T 3tnj_A           81 NTLG--IDPAHR-WLVW--GEPREEIIRIAEQENVDLIVVGSHGRHGLA-------LLLGSTANSVLHYAKCDVLAV  145 (150)
T ss_dssp             HHHT--CCGGGE-EEEE--SCHHHHHHHHHHHTTCSEEEEEEC---------------CCCHHHHHHHHCSSEEEEE
T ss_pred             HHcC--CCcceE-EEec--CCHHHHHHHHHHHcCCCEEEEecCCCCCcC-------eEecchHHHHHHhCCCCEEEE
Confidence            3211  22 111 1222  578999999999999999999998653322       235677789999999998553

>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4

Probab=97.87  E-value=3.8e-05  Score=73.62  Aligned_cols=136  Identities=15%  Similarity=0.134  Sum_probs=82.2

Q ss_pred             ceEEEEecCCCChhhHHHHHHHhcCCCCCCceEEEE--EEeeecccchhhhhcccCccccccchhhhhhhhHHHHHHHHH
Q 038269          445 LQILLCLHGSQNITSTLNFLEISRGTANPGVAVYVT--DMIELTDQIAATLVQNEGIDTVTVTDKAVMEMREEITTAVQS  522 (792)
Q Consensus       445 lrILvcv~~~~~~~~li~l~~~~~~~~~sp~~v~~l--hLvel~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~  522 (792)
                      -|||+|+...+.....++.+..++. .  ...++++  |+++......+.-...+     ...+ ...+..++.++.+..
T Consensus        18 ~~ILv~vD~s~~s~~al~~A~~lA~-~--~a~l~ll~a~v~~~~~~~~~~~~~~~-----~~~~-~~~~~~~~~l~~~~~   88 (163)
T 1tq8_A           18 KTVVVGTDGSDSSMRAVDRAAQIAG-A--DAKLIIASAYLPQHEDARAADILKDE-----SYKV-TGTAPIYEILHDAKE   88 (163)
T ss_dssp             CEEEEECCSSHHHHHHHHHHHHHHT-T--TSEEEEEEECCC--------------------------CCTHHHHHHHHHH
T ss_pred             CEEEEEcCCCHHHHHHHHHHHHHhC-C--CCEEEEEEeeeccCcccccccccccH-----HHHH-HHHHHHHHHHHHHHH
Confidence            4899999887888888888888876 3  3578899  88764431011000000     0000 111223444444443


Q ss_pred             hhhccCcceE-EEEeEeecCCCChhHHHHHHHhhcCCcEEEecCCCCccCCCccccCCcchhHHHHHHhhhCCCceEEE
Q 038269          523 YVDENGGGIT-LKRMLALSTFSGMPQDICILAEDLMVSLIILPFHKRQLEDGTLDEGHPGFRYVNRKLLRNATCSVGIL  600 (792)
Q Consensus       523 ~~~~~~~~v~-v~~~t~vs~~~~m~~dI~~~a~e~~~~liilp~h~~~~~~g~~~~~~~~~~~~n~~vl~~apCsVgIl  600 (792)
                      ..+  ..++. ++..+..   .+..+.|++.|++.++|+|+||.|.+....+      ..++++-++|++++||+|-|+
T Consensus        89 ~~~--~~gv~~v~~~v~~---G~~~~~I~~~a~~~~~DLIV~G~~g~~~~~~------~~lGSva~~vl~~a~~PVlvV  156 (163)
T 1tq8_A           89 RAH--NAGAKNVEERPIV---GAPVDALVNLADEEKADLLVVGNVGLSTIAG------RLLGSVPANVSRRAKVDVLIV  156 (163)
T ss_dssp             HHH--TTTCCEEEEEEEC---SSHHHHHHHHHHHTTCSEEEEECCCCCSHHH------HHTBBHHHHHHHHTTCEEEEE
T ss_pred             HHH--HcCCCeEEEEEec---CCHHHHHHHHHHhcCCCEEEECCCCCCcccc------eeeccHHHHHHHhCCCCEEEE
Confidence            333  23465 6655443   5789999999999999999999986533211      235667799999999998553

>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes}

Probab=97.84  E-value=0.00012  Score=67.53  Aligned_cols=134  Identities=14%  Similarity=0.084  Sum_probs=79.0

Q ss_pred             eeEEEEeccCcChHHHHHHHHHHh-cCCCeEEEEEEeeecCCCCcccccccccCCcchhhhhh-hhhHHHHHHHHHhhcC
Q 038269          619 LNVAVIFIGGKDDREALAYASRVA-RHPAVKLTVIRFLLDNSENPQRRAATYKDNTAELEEEM-KIDDECFAEFYERQVA  696 (792)
Q Consensus       619 ~~v~v~f~GG~ddreAL~~a~rma-~~~~v~ltv~r~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~d~~~l~e~~~~~~~  696 (792)
                      ++|++++-|.++.+.|+++|.+++ +..+.+++++|+.+...........    .....+..+ +..++.++++.+....
T Consensus         2 ~~ILv~~D~s~~s~~al~~a~~la~~~~~a~l~ll~v~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~~~   77 (138)
T 3idf_A            2 KKLLFAIDDTEACERAAQYILDMFGKDADCTLTLIHVKPEFMLYGEAVLA----AYDEIEMKEEEKAKLLTQKFSTFFTE   77 (138)
T ss_dssp             EEEEEECCSSHHHHHHHHHHHHHHTTCTTEEEEEEEEECCCCCCHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             ceEEEEeCCCHHHHHHHHHHHHHhccCCCCEEEEEEEecCCCcccccccC----cHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            489999999999999999999999 9999999999998654321000000    000011111 3345666666544322


Q ss_pred             CCcEEEEEEecCChHHHHHHHHhhhcCccEEEEecCCCCCcccccCCcccCCCCccchhhhhhhcCCCCCceeEEEE
Q 038269          697 EGHVAYAEKHLANSSETFATLRSLEGQYALIIVGRGERANSILTVGMNDWQQCPELGPIGDVLSGSDFLVRTSVLII  773 (792)
Q Consensus       697 ~~~v~y~e~~v~~~~e~~~~i~~~~~~~dL~iVGr~~~~~s~~~~gl~~w~e~~eLG~iGd~las~d~~~~~SvLvv  773 (792)
                       ..+.+... +..| +..+.|.+.++++||+|+|+++..         .|.+.-  |-+-+-+...   +++.||||
T Consensus        78 -~g~~~~~~-v~~g-~~~~~I~~~a~~~dliV~G~~~~~---------~~~~~~--Gs~~~~vl~~---~~~pVlvv  137 (138)
T 3idf_A           78 -KGINPFVV-IKEG-EPVEMVLEEAKDYNLLIIGSSENS---------FLNKIF--ASHQDDFIQK---APIPVLIV  137 (138)
T ss_dssp             -TTCCCEEE-EEES-CHHHHHHHHHTTCSEEEEECCTTS---------TTSSCC--CCTTCHHHHH---CSSCEEEE
T ss_pred             -CCCCeEEE-EecC-ChHHHHHHHHhcCCEEEEeCCCcc---------hHHHHh--CcHHHHHHhc---CCCCEEEe
Confidence             22332222 2233 344455555448999999997531         222322  6555555543   45788887

>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4

Probab=97.80  E-value=0.00013  Score=70.44  Aligned_cols=143  Identities=7%  Similarity=0.049  Sum_probs=79.5

Q ss_pred             ceEEEEecCCC---------ChhhHHHHHHHhcCCC-CCCceEEEEEEeeecccchhhhhcccCccccc-cch--hhhhh
Q 038269          445 LQILLCLHGSQ---------NITSTLNFLEISRGTA-NPGVAVYVTDMIELTDQIAATLVQNEGIDTVT-VTD--KAVME  511 (792)
Q Consensus       445 lrILvcv~~~~---------~~~~li~l~~~~~~~~-~sp~~v~~lhLvel~~r~~~~~~~~~~~~~~~-~~~--~~~~~  511 (792)
                      -|||+++...+         .....++.+..+.... .....++++|+++.......- ... ...... ..+  +...+
T Consensus         6 ~~ILv~vD~s~~~~~~~~~~~s~~al~~a~~la~~~~~~~a~l~ll~v~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~   83 (175)
T 2gm3_A            6 TKVMVAVNASTIKDYPNPSISCKRAFEWTLEKIVRSNTSDFKILLLHVQVVDEDGFDD-VDS-IYASPEDFRDMRQSNKA   83 (175)
T ss_dssp             EEEEEECCBCSSSCTTCBCHHHHHHHHHHHHHTTTTCTTSEEEEEEEEEC-----------C-CCCSHHHHHHHTTSHHH
T ss_pred             cEEEEEECCCcccccccccHHHHHHHHHHHHHhhcccCCCCEEEEEEEeecccccccc-ccc-ccCCHHHHHHHHHHHHH
Confidence            47999998777         7777788877754322 135689999998643211000 000 000000 000  00011


Q ss_pred             hhHHHHHHHHHhhhccCcceEEEEeEeecCCCChhHHHHHHHhhcCCcEEEecCCCCccCCCccccCCcchhHHHHHHhh
Q 038269          512 MREEITTAVQSYVDENGGGITLKRMLALSTFSGMPQDICILAEDLMVSLIILPFHKRQLEDGTLDEGHPGFRYVNRKLLR  591 (792)
Q Consensus       512 ~~~~i~~af~~~~~~~~~~v~v~~~t~vs~~~~m~~dI~~~a~e~~~~liilp~h~~~~~~g~~~~~~~~~~~~n~~vl~  591 (792)
                      ..++.++.+....+  ..++.++..+..   .+..+.|++.|++.++|+|+||.|.+....+      ..++++-++|++
T Consensus        84 ~~~~~l~~~~~~~~--~~g~~~~~~v~~---G~~~~~I~~~a~~~~~DLIVmG~~g~~~~~~------~~~Gsva~~vl~  152 (175)
T 2gm3_A           84 KGLHLLEFFVNKCH--EIGVGCEAWIKT---GDPKDVICQEVKRVRPDFLVVGSRGLGRFQK------VFVGTVSAFCVK  152 (175)
T ss_dssp             HHHHHHHHHHHHHH--HHTCEEEEEEEE---SCHHHHHHHHHHHHCCSEEEEEECCCC--------------CHHHHHHH
T ss_pred             HHHHHHHHHHHHHH--HCCCceEEEEec---CCHHHHHHHHHHHhCCCEEEEeCCCCChhhh------hhcCchHHHHHh
Confidence            12334443333222  124666654432   5789999999999999999999986533221      236778899999


Q ss_pred             hCCCceEEE
Q 038269          592 NATCSVGIL  600 (792)
Q Consensus       592 ~apCsVgIl  600 (792)
                      ++||+|-|+
T Consensus       153 ~a~~pVlvv  161 (175)
T 2gm3_A          153 HAECPVMTI  161 (175)
T ss_dssp             HCSSCEEEE
T ss_pred             CCCCCEEEE
Confidence            999998654

>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii}

Probab=97.77  E-value=9.6e-05  Score=70.94  Aligned_cols=151  Identities=11%  Similarity=0.013  Sum_probs=84.1

Q ss_pred             ceeEEEEeccCcChHHHHHHHHHHhcCCCeEEEEEEeeecCCCCccc-ccc-cc---cCCc-chhhhhhhhhHHHHHHHH
Q 038269          618 SLNVAVIFIGGKDDREALAYASRVARHPAVKLTVIRFLLDNSENPQR-RAA-TY---KDNT-AELEEEMKIDDECFAEFY  691 (792)
Q Consensus       618 ~~~v~v~f~GG~ddreAL~~a~rma~~~~v~ltv~r~~~~~~~~~~~-~~~-~~---~~~~-~~~~~~~~~d~~~l~e~~  691 (792)
                      ..+|++++=|.++.+.|+++|.++++..+.+++++|++......... ... .+   .... ...+..++..++.++++.
T Consensus         5 ~~~ILv~vD~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~   84 (170)
T 2dum_A            5 FRKVLFPTDFSEGAYRAVEVFEKRNKMEVGEVILLHVIDEGTLEELMDGYSFFYDNAEIELKDIKEKLKEEASRKLQEKA   84 (170)
T ss_dssp             CSEEEEECCSSHHHHHHHHHHHHHCCSCCSEEEEEEEEETTGGGCCC------------CCTTSHHHHHHHHHHHHHHHH
T ss_pred             cceEEEEecCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCccccccccccccccccccccHHHHHHHHHHHHHHHHHHHH
Confidence            35899999999999999999999999999999999998643210000 000 00   0000 001122233445566664


Q ss_pred             HhhcC-CCcEEEEEEecCChHHHHHHHHhhhc--CccEEEEecCCCCCcccccCCcccCCCCccchhhhhhhcCCCCCce
Q 038269          692 ERQVA-EGHVAYAEKHLANSSETFATLRSLEG--QYALIIVGRGERANSILTVGMNDWQQCPELGPIGDVLSGSDFLVRT  768 (792)
Q Consensus       692 ~~~~~-~~~v~y~e~~v~~~~e~~~~i~~~~~--~~dL~iVGr~~~~~s~~~~gl~~w~e~~eLG~iGd~las~d~~~~~  768 (792)
                      +.... +-++.+ +..+..| +....|.+.++  ++||+|+|+++..      ++.+    -=+|-+-+-+...   +++
T Consensus        85 ~~~~~~g~~~~~-~~~~~~g-~~~~~I~~~a~~~~~DlIV~G~~g~~------~~~~----~~~Gsv~~~vl~~---~~~  149 (170)
T 2dum_A           85 EEVKRAFRAKNV-RTIIRFG-IPWDEIVKVAEEENVSLIILPSRGKL------SLSH----EFLGSTVMRVLRK---TKK  149 (170)
T ss_dssp             HHHHHHTTCSEE-EEEEEEE-CHHHHHHHHHHHTTCSEEEEESCCCC------C--T----TCCCHHHHHHHHH---CSS
T ss_pred             HHHHHcCCceee-eeEEecC-ChHHHHHHHHHHcCCCEEEECCCCCC------cccc----ceechHHHHHHHh---CCC
Confidence            43211 223443 1122233 34444544443  7999999997531      2222    1267777777654   568


Q ss_pred             eEEEEeeeccCCCCC
Q 038269          769 SVLIIKQHDFKGELD  783 (792)
Q Consensus       769 SvLvvqq~~~~~~~~  783 (792)
                      .||||........||
T Consensus       150 PVlvv~~~~~~~~~~  164 (170)
T 2dum_A          150 PVLIIKEVDENELAK  164 (170)
T ss_dssp             CEEEECCCCCC----
T ss_pred             CEEEEccCCcccccc
Confidence            999998654443333

>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0

Probab=97.77  E-value=9.9e-05  Score=68.69  Aligned_cols=139  Identities=12%  Similarity=0.134  Sum_probs=82.8

Q ss_pred             cceeEEEEeccCcChHHHHHHHHHHhcCCCeEEEEEEeeecCCCCcccccccccCCcchhhhhhhhhHHHHHHHHHhhcC
Q 038269          617 ASLNVAVIFIGGKDDREALAYASRVARHPAVKLTVIRFLLDNSENPQRRAATYKDNTAELEEEMKIDDECFAEFYERQVA  696 (792)
Q Consensus       617 ~~~~v~v~f~GG~ddreAL~~a~rma~~~~v~ltv~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~e~~~~~~~  696 (792)
                      ...+|++++=|.++.+.|+++|.++++..+.+++++|+.+......... ..  ......+..++..++.++++.+....
T Consensus         4 ~~~~ILv~~D~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~l~~~~~~~~~   80 (146)
T 3s3t_A            4 RYTNILVPVDSSDAAQAAFTEAVNIAQRHQANLTALYVVDDSAYHTPAL-DP--VLSELLDAEAAHAKDAMRQRQQFVAT   80 (146)
T ss_dssp             CCCEEEEECCSSHHHHHHHHHHHHHHHHHTCEEEEEEEEECCCCCCGGG-HH--HHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             ccceEEEEcCCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCcccccccc-cc--ccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3469999999999999999999999999999999999987543211000 00  00001122233445667776554322


Q ss_pred             CCcE-EEEEEecCChHHHHHHHHh-hh--cCccEEEEecCCCCCcccccCCcccCCCCccchhhhhhhcCCCCCceeEEE
Q 038269          697 EGHV-AYAEKHLANSSETFATLRS-LE--GQYALIIVGRGERANSILTVGMNDWQQCPELGPIGDVLSGSDFLVRTSVLI  772 (792)
Q Consensus       697 ~~~v-~y~e~~v~~~~e~~~~i~~-~~--~~~dL~iVGr~~~~~s~~~~gl~~w~e~~eLG~iGd~las~d~~~~~SvLv  772 (792)
                       ..+ .+... +..| +....|.+ .+  .++||+|+|+++..      ++.+|    =+|-+-+-+...   +++.|||
T Consensus        81 -~g~~~~~~~-~~~g-~~~~~I~~~~a~~~~~dliV~G~~~~~------~~~~~----~~Gs~~~~vl~~---~~~pVlv  144 (146)
T 3s3t_A           81 -TSAPNLKTE-ISYG-IPKHTIEDYAKQHPEIDLIVLGATGTN------SPHRV----AVGSTTSYVVDH---APCNVIV  144 (146)
T ss_dssp             -SSCCCCEEE-EEEE-CHHHHHHHHHHHSTTCCEEEEESCCSS------CTTTC----SSCHHHHHHHHH---CSSEEEE
T ss_pred             -cCCcceEEE-EecC-ChHHHHHHHHHhhcCCCEEEECCCCCC------CcceE----EEcchHHHHhcc---CCCCEEE
Confidence             123 22222 2233 33444444 43  57999999987531      12221    267777766654   5678998


Q ss_pred             Ee
Q 038269          773 IK  774 (792)
Q Consensus       773 vq  774 (792)
                      |.
T Consensus       145 V~  146 (146)
T 3s3t_A          145 IR  146 (146)
T ss_dssp             EC
T ss_pred             eC
Confidence            73

>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4

Probab=97.75  E-value=6.4e-05  Score=69.63  Aligned_cols=132  Identities=12%  Similarity=0.118  Sum_probs=79.0

Q ss_pred             eEEEEecCCCChhhHHHHHHHhcCCCCCCceEEEEEEeee-cccchhhhhcccCccccccchhhhhhhhHHHHHHHHHhh
Q 038269          446 QILLCLHGSQNITSTLNFLEISRGTANPGVAVYVTDMIEL-TDQIAATLVQNEGIDTVTVTDKAVMEMREEITTAVQSYV  524 (792)
Q Consensus       446 rILvcv~~~~~~~~li~l~~~~~~~~~sp~~v~~lhLvel-~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~  524 (792)
                      |||+++...++....++.+..++..  ....++++|+++- +...... .      .... +....+..++..+.++.+.
T Consensus         4 ~ILv~~D~s~~s~~al~~a~~la~~--~~a~l~ll~v~~~~~~~~~~~-~------~~~~-~~~~~~~~~~~~~~l~~~~   73 (141)
T 1jmv_A            4 HILVAVDLSEESPILLKKAVGIAKR--HDAKLSIIHVDVNFSDLYTGL-I------DVNM-SSMQDRISTETQKALLDLA   73 (141)
T ss_dssp             EEEEEECCSTTHHHHHHHHHHHHHH--HTCEEEEEEEEECCGGGCCCC-E------EHHH-HHHTTCCCCHHHHHHHHHH
T ss_pred             eEEEEecCchhhHHHHHHHHHHHHh--cCCEEEEEEEecCchhhhccc-c------ccch-HHHHHHHHHHHHHHHHHHH
Confidence            7999998888888888888777753  2357999999842 2211100 0      0000 0000001122223334443


Q ss_pred             hccCcceEEEEeEeecCCCChhHHHHHHHhhcCCcEEEecCCCCccCCCccccCCcchhHHHHHHhhhCCCceEEE
Q 038269          525 DENGGGITLKRMLALSTFSGMPQDICILAEDLMVSLIILPFHKRQLEDGTLDEGHPGFRYVNRKLLRNATCSVGIL  600 (792)
Q Consensus       525 ~~~~~~v~v~~~t~vs~~~~m~~dI~~~a~e~~~~liilp~h~~~~~~g~~~~~~~~~~~~n~~vl~~apCsVgIl  600 (792)
                      +..  ++.+.......  .+..+.|++.|++.++|+|++|.| +..    ..    .++++-++|++++||+|-|+
T Consensus        74 ~~~--~~~~~~~~~~~--g~~~~~I~~~a~~~~~dliV~G~~-~~~----~~----~lgs~~~~vl~~~~~pVlvv  136 (141)
T 1jmv_A           74 ESV--DYPISEKLSGS--GDLGQVLSDAIEQYDVDLLVTGHH-QDF----WS----KLMSSTRQVMNTIKIDMLVV  136 (141)
T ss_dssp             HHS--SSCCCCEEEEE--ECHHHHHHHHHHHTTCCEEEEEEC-CCC----HH----HHHHHHHHHHTTCCSEEEEE
T ss_pred             HHc--CCCceEEEEec--CCHHHHHHHHHHhcCCCEEEEeCC-Cch----hh----hhcchHHHHHhcCCCCEEEe
Confidence            322  23331111122  578999999999999999999988 532    21    15688899999999998654

>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*

Probab=97.72  E-value=0.02  Score=61.18  Aligned_cols=70  Identities=7%  Similarity=0.040  Sum_probs=45.1

Q ss_pred             hHHHHHHHHHhhCCChHHHHHHHHHhhhh-hHHHHHHHHHhhcccccChhhHHHHHHHHHHHHhhhhHHHHHhh
Q 038269          350 KVVGTVICGLMLGFHWPESVSLGLLLSAK-GHFYIFLAIMGAVHNYITHTTAASLVIMIFFTIVHTPFVVQNII  422 (792)
Q Consensus       350 K~l~~~l~~~~~~~~~re~~~lg~~l~~k-G~v~l~l~~~~~~~~~i~~~~~~~lv~~~vl~~~~~~~li~~l~  422 (792)
                      -+...+..++.+|.+.+|+..+++-.+.| ....+.++...+..   ++..--...+..+.+.++++.+.++.-
T Consensus       241 ~~~lg~~~~r~~~~~~~~~~ti~~e~G~qNs~lai~lA~~~F~~---~p~~alp~~iy~~~q~i~~~~la~~~~  311 (332)
T 3zux_A          241 GYLLGFFAAKWTGLPYDAQKALTIEVGMQNSGLAAALAAAHFAA---APVVAVPGALFSVWHNISGSLLATYWA  311 (332)
T ss_dssp             HHHHHHHHHHHTTCCHHHHHHHHHHHHCCCHHHHHHHHHHHSTT---CGGGGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCHhHhhhhhhhhhhccHHHHHHHHHHHcCC---CchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455677888999999999988844444 55677666655521   223334445566777777777776643

>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A*

Probab=97.66  E-value=6.6e-05  Score=71.24  Aligned_cols=129  Identities=14%  Similarity=0.124  Sum_probs=79.8

Q ss_pred             cceeEEEEecc-CcChHHHHHHHHHHhcCCCeEEEEEEeeecCCCCcccccccccCCcchhhhhhhhhHHHHHHHHHhhc
Q 038269          617 ASLNVAVIFIG-GKDDREALAYASRVARHPAVKLTVIRFLLDNSENPQRRAATYKDNTAELEEEMKIDDECFAEFYERQV  695 (792)
Q Consensus       617 ~~~~v~v~f~G-G~ddreAL~~a~rma~~~~v~ltv~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~e~~~~~~  695 (792)
                      ...+|++++=| .+..+.|+++|.++++..+.+++++++.+.....              ++..++..++.++++.+...
T Consensus        23 m~~~ILv~vD~~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~--------------~~~~~~~~~~~l~~~~~~~~   88 (155)
T 3dlo_A           23 IYMPIVVAVDKKSDRAERVLRFAAEEARLRGVPVYVVHSLPGGGRT--------------KDEDIIEAKETLSWAVSIIR   88 (155)
T ss_dssp             CCCCEEEECCSSSHHHHHHHHHHHHHHHHHTCCEEEEEEECCSTTS--------------CHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCeEEEEECCCCHHHHHHHHHHHHHHHhcCCEEEEEEEEcCCCcc--------------cHHHHHHHHHHHHHHHHHHH
Confidence            35689999999 9999999999999999999999999998643210              11122224445555533321


Q ss_pred             C-CCcEEEEEEecCChHHHHHHHHhhhc--CccEEEEecCCCCCcccccCCcccCCCCccchhhhhhhcCCCCCceeEEE
Q 038269          696 A-EGHVAYAEKHLANSSETFATLRSLEG--QYALIIVGRGERANSILTVGMNDWQQCPELGPIGDVLSGSDFLVRTSVLI  772 (792)
Q Consensus       696 ~-~~~v~y~e~~v~~~~e~~~~i~~~~~--~~dL~iVGr~~~~~s~~~~gl~~w~e~~eLG~iGd~las~d~~~~~SvLv  772 (792)
                      . +..+... ..+..| +..+.|.+.++  ++||+|+|+++..      ++.+    -=+|-+-+-+...   +.+.|||
T Consensus        89 ~~g~~~~~~-~~v~~G-~~~~~I~~~a~~~~~DLIV~G~~g~~------~~~~----~~lGSv~~~vl~~---a~~PVLv  153 (155)
T 3dlo_A           89 KEGAEGEEH-LLVRGK-EPPDDIVDFADEVDAIAIVIGIRKRS------PTGK----LIFGSVARDVILK---ANKPVIC  153 (155)
T ss_dssp             HTTCCEEEE-EEESSS-CHHHHHHHHHHHTTCSEEEEECCEEC------TTSC----EECCHHHHHHHHH---CSSCEEE
T ss_pred             hcCCCceEE-EEecCC-CHHHHHHHHHHHcCCCEEEECCCCCC------CCCC----EEeccHHHHHHHh---CCCCEEE
Confidence            1 2234322 223333 23344444433  7999999987531      1222    1267777776654   5678998


Q ss_pred             Ee
Q 038269          773 IK  774 (792)
Q Consensus       773 vq  774 (792)
                      |.
T Consensus       154 Vr  155 (155)
T 3dlo_A          154 IK  155 (155)
T ss_dssp             EC
T ss_pred             eC
Confidence            84

>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0

Probab=97.65  E-value=4.2e-05  Score=71.34  Aligned_cols=141  Identities=13%  Similarity=0.119  Sum_probs=77.4

Q ss_pred             eeEEEEeccCcChHHHHHHHHHHhcCCCeEEEEEEeeecCCCCcccc-cccccCCcchhhhhhhhhHHHHHHHHHhhcC-
Q 038269          619 LNVAVIFIGGKDDREALAYASRVARHPAVKLTVIRFLLDNSENPQRR-AATYKDNTAELEEEMKIDDECFAEFYERQVA-  696 (792)
Q Consensus       619 ~~v~v~f~GG~ddreAL~~a~rma~~~~v~ltv~r~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d~~~l~e~~~~~~~-  696 (792)
                      .+|++++=|.++.+.|+++|.+++++.+.+++++|+.+......... ...........+..++..++.++++.+.... 
T Consensus         3 ~~ILv~vD~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~   82 (147)
T 3hgm_A            3 NRIMVPVDGSKGAVKALEKGVGLQQLTGAELYILCVFKHHSLLEASLSMARPEQLDIPDDALKDYATEIAVQAKTRATEL   82 (147)
T ss_dssp             SEEEEECCSBHHHHHHHHHHHHHHHHHCCEEEEEEEECCHHHHHHTBSSCCCGGGCCCTTHHHHHHHHHHHHHHHHHHHT
T ss_pred             ceEEEEeCCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCcccccccccccChhhhhhHHHHHHHHHHHHHHHHHHHHHhc
Confidence            58999999999999999999999999999999999986421000000 0000000000112223344555555433211 


Q ss_pred             CCcEEEEEEecCChHHHHHHHHhhhc--CccEEEEecCCCCCcccccCCcccCCCCccchhhhhhhcCCCCCceeEEEE
Q 038269          697 EGHVAYAEKHLANSSETFATLRSLEG--QYALIIVGRGERANSILTVGMNDWQQCPELGPIGDVLSGSDFLVRTSVLII  773 (792)
Q Consensus       697 ~~~v~y~e~~v~~~~e~~~~i~~~~~--~~dL~iVGr~~~~~s~~~~gl~~w~e~~eLG~iGd~las~d~~~~~SvLvv  773 (792)
                      +-++.-.+..+..| +....|.+.++  ++||+|+|+++..         .|.+ --+|-+-+-+...   +++.||||
T Consensus        83 g~~~~~~~~~~~~g-~~~~~I~~~a~~~~~dliV~G~~~~~---------~~~~-~~~Gs~~~~vl~~---~~~pVlvV  147 (147)
T 3hgm_A           83 GVPADKVRAFVKGG-RPSRTIVRFARKRECDLVVIGAQGTN---------GDKS-LLLGSVAQRVAGS---AHCPVLVV  147 (147)
T ss_dssp             TCCGGGEEEEEEES-CHHHHHHHHHHHTTCSEEEECSSCTT---------CCSC-CCCCHHHHHHHHH---CSSCEEEC
T ss_pred             CCCccceEEEEecC-CHHHHHHHHHHHhCCCEEEEeCCCCc---------cccc-eeeccHHHHHHhh---CCCCEEEC
Confidence            21220011222233 33344444433  7999999997531         1211 1257766666653   45788875

>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A*

Probab=97.64  E-value=9.4e-05  Score=69.28  Aligned_cols=140  Identities=11%  Similarity=0.135  Sum_probs=79.1

Q ss_pred             ceeEEEEeccCcChHHHHHHHHHHhcCCCeEEEEEEeeecCCCCcccccccccC-CcchhhhhhhhhHHHHHHHHHhhcC
Q 038269          618 SLNVAVIFIGGKDDREALAYASRVARHPAVKLTVIRFLLDNSENPQRRAATYKD-NTAELEEEMKIDDECFAEFYERQVA  696 (792)
Q Consensus       618 ~~~v~v~f~GG~ddreAL~~a~rma~~~~v~ltv~r~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~~~l~e~~~~~~~  696 (792)
                      ..+|++++=|.++.+.|+++|.++++..+.+++++++.+............... .....+..++.-++.++++.++.. 
T Consensus         6 ~~~ILv~vD~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-   84 (150)
T 3tnj_A            6 YHHILLAVDFSSEDSQVVQKVRNLASQIGARLSLIHVLDNIPMPDTPYGTAIPLDTETTYDAMLDVEKQKLSQIGNTLG-   84 (150)
T ss_dssp             CSEEEEECCCSTTHHHHHHHHHHHHHHHTCEEEEEEEEC--------CTTCCCSSSCCCHHHHHHHHHHHHHHHHHHHT-
T ss_pred             cceEEEEeCCCHHHHHHHHHHHHHHhhcCCEEEEEEEEcCccccccccccccCcCHHHHHHHHHHHHHHHHHHHHHHcC-
Confidence            468999999999999999999999999999999999986432100000000000 001122233344566777755441 


Q ss_pred             CCcEEEEEEecCChHHHHHHHHhhhc--CccEEEEecCCCCCcccccCCcccCCCCccchhhhhhhcCCCCCceeEEEEe
Q 038269          697 EGHVAYAEKHLANSSETFATLRSLEG--QYALIIVGRGERANSILTVGMNDWQQCPELGPIGDVLSGSDFLVRTSVLIIK  774 (792)
Q Consensus       697 ~~~v~y~e~~v~~~~e~~~~i~~~~~--~~dL~iVGr~~~~~s~~~~gl~~w~e~~eLG~iGd~las~d~~~~~SvLvvq  774 (792)
                      .+.+.   ..+..| +..+.|.+.++  ++||+|+|+++..         .|.  --+|-+-+-+...   +++.||||.
T Consensus        85 ~~~~~---~~~~~g-~~~~~I~~~a~~~~~dliV~G~~~~~---------~~~--~~~Gs~~~~vl~~---~~~pVlvv~  146 (150)
T 3tnj_A           85 IDPAH---RWLVWG-EPREEIIRIAEQENVDLIVVGSHGRH---------GLA--LLLGSTANSVLHY---AKCDVLAVR  146 (150)
T ss_dssp             CCGGG---EEEEES-CHHHHHHHHHHHTTCSEEEEEEC-------------------CCCHHHHHHHH---CSSEEEEEE
T ss_pred             CCcce---EEEecC-CHHHHHHHHHHHcCCCEEEEecCCCC---------CcC--eEecchHHHHHHh---CCCCEEEEe
Confidence            12121   122223 23344444443  7999999987531         222  3367777766654   568999997


Q ss_pred             ee
Q 038269          775 QH  776 (792)
Q Consensus       775 q~  776 (792)
                      ..
T Consensus       147 ~~  148 (150)
T 3tnj_A          147 LR  148 (150)
T ss_dssp             CC
T ss_pred             CC
Confidence            53

>1q77_A Hypothetical protein AQ_178; structural genomics, universal stress protein, PSI, protein structure initiative; 2.70A {Aquifex aeolicus} SCOP: c.26.2.4

Probab=97.48  E-value=0.00061  Score=62.64  Aligned_cols=129  Identities=7%  Similarity=0.011  Sum_probs=77.1

Q ss_pred             ceEEEEecCCCChhhHHHHHHHhcCCCCCCceEEEEEEe-ee-cccchhhhhcccCccccccchhhhhhhhHHHHHHHHH
Q 038269          445 LQILLCLHGSQNITSTLNFLEISRGTANPGVAVYVTDMI-EL-TDQIAATLVQNEGIDTVTVTDKAVMEMREEITTAVQS  522 (792)
Q Consensus       445 lrILvcv~~~~~~~~li~l~~~~~~~~~sp~~v~~lhLv-el-~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~  522 (792)
                      -|||+++...+.....++.+..++..  ....++++|++ +. +........ ...... ...+ ...+..++.++.++.
T Consensus         5 ~~ILv~~D~s~~s~~al~~a~~la~~--~~a~l~ll~v~~~~~~~~~~~~~~-~~~~~~-~~~~-~~~~~~~~~l~~~~~   79 (138)
T 1q77_A            5 KVLLVLTDAYSDCEKAITYAVNFSEK--LGAELDILAVLEDVYNLERANVTF-GLPFPP-EIKE-ESKKRIERRLREVWE   79 (138)
T ss_dssp             EEEEEEESTTCCCHHHHHHHHHHHTT--TCCEEEEEEECHHHHHHHHHHHHH-CCCCCT-HHHH-HHHHHHHHHHHHHHH
T ss_pred             cEEEEEccCCHhHHHHHHHHHHHHHH--cCCeEEEEEEeccccccccccccc-CCCCCh-HHHH-HHHHHHHHHHHHHHH
Confidence            37999998888888888888888754  34689999998 63 110000000 000000 0000 111223333333333


Q ss_pred             h-hhccCcceEEEEeEeecCCCChhHHHHHHHhhcCCcEEEecCCCCccCCCccccCCcchhHHHHHHhhhCCCceEE
Q 038269          523 Y-VDENGGGITLKRMLALSTFSGMPQDICILAEDLMVSLIILPFHKRQLEDGTLDEGHPGFRYVNRKLLRNATCSVGI  599 (792)
Q Consensus       523 ~-~~~~~~~v~v~~~t~vs~~~~m~~dI~~~a~e~~~~liilp~h~~~~~~g~~~~~~~~~~~~n~~vl~~apCsVgI  599 (792)
                      + ..  ..+ .++.... .  .+..+.|++.|++.++|+|+||.|.+               ++-++|++++||+|-|
T Consensus        80 ~~~~--~~~-~~~~~~~-~--g~~~~~I~~~a~~~~~dliV~G~~g~---------------sv~~~vl~~a~~PVlv  136 (138)
T 1q77_A           80 KLTG--STE-IPGVEYR-I--GPLSEEVKKFVEGKGYELVVWACYPS---------------AYLCKVIDGLNLASLI  136 (138)
T ss_dssp             HHHS--CCC-CCCEEEE-C--SCHHHHHHHHHTTSCCSEEEECSCCG---------------GGTHHHHHHSSSEEEE
T ss_pred             Hhhc--cCC-cceEEEE-c--CCHHHHHHHHHHhcCCCEEEEeCCCC---------------chHHHHHHhCCCceEe
Confidence            2 11  222 3333332 2  67999999999999999999998843               3347999999999754

>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum}

Probab=97.40  E-value=0.00021  Score=67.47  Aligned_cols=136  Identities=15%  Similarity=0.161  Sum_probs=81.4

Q ss_pred             cceeEEEEec--cCcChHHHHHHHHHHhcCCCeEEEEEEeeecCCCCcccccccccCCcchhhhhhhhhHHHHHHHHHhh
Q 038269          617 ASLNVAVIFI--GGKDDREALAYASRVARHPAVKLTVIRFLLDNSENPQRRAATYKDNTAELEEEMKIDDECFAEFYERQ  694 (792)
Q Consensus       617 ~~~~v~v~f~--GG~ddreAL~~a~rma~~~~v~ltv~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~e~~~~~  694 (792)
                      ...+|++++=  |.++.+.|+++|.++++..+.+++++|+.+.......   .  .......+..++..++.++++.+..
T Consensus        14 ~~~~ILv~vD~~~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~---~--~~~~~~~~~~~~~~~~~l~~~~~~~   88 (156)
T 3fg9_A           14 VYRRILLTVDEDDNTSSERAFRYATTLAHDYDVPLGICSVLESEDINIF---D--SLTPSKIQAKRKHVEDVVAEYVQLA   88 (156)
T ss_dssp             CCC-EEEECCSCCCHHHHHHHHHHHHHHHHHTCCEEEEEEECCCCTTCC---C--SSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCceEEEEECCCCCHHHHHHHHHHHHHHHhcCCEEEEEEEEeCCCcccc---c--cCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            3568999999  9999999999999999999999999999865431100   0  0000111222333455666664432


Q ss_pred             cC-CC-cEEEEEEecCChHHHHHHHHhh---hcCccEEEEecCCCCCcccccCCcccCCCCccchhhhhhhcCCCCCcee
Q 038269          695 VA-EG-HVAYAEKHLANSSETFATLRSL---EGQYALIIVGRGERANSILTVGMNDWQQCPELGPIGDVLSGSDFLVRTS  769 (792)
Q Consensus       695 ~~-~~-~v~y~e~~v~~~~e~~~~i~~~---~~~~dL~iVGr~~~~~s~~~~gl~~w~e~~eLG~iGd~las~d~~~~~S  769 (792)
                      .. +- .+.+.  +..+| +....|.+.   ..++||+|+|+++..         .+. . =+|.+-+-+...   +++.
T Consensus        89 ~~~g~~~~~~~--v~~~g-~~~~~I~~~~a~~~~~DlIV~G~~g~~---------~~~-~-~~Gs~~~~vl~~---a~~P  151 (156)
T 3fg9_A           89 EQRGVNQVEPL--VYEGG-DVDDVILEQVIPEFKPDLLVTGADTEF---------PHS-K-IAGAIGPRLARK---APIS  151 (156)
T ss_dssp             HHHTCSSEEEE--EEECS-CHHHHHHHTHHHHHCCSEEEEETTCCC---------TTS-S-SCSCHHHHHHHH---CSSE
T ss_pred             HHcCCCceEEE--EEeCC-CHHHHHHHHHHHhcCCCEEEECCCCCC---------ccc-e-eecchHHHHHHh---CCCC
Confidence            11 11 23322  22213 233444443   356999999997641         232 2 378877777764   5679


Q ss_pred             EEEEe
Q 038269          770 VLIIK  774 (792)
Q Consensus       770 vLvvq  774 (792)
                      ||||.
T Consensus       152 VlvV~  156 (156)
T 3fg9_A          152 VIVVR  156 (156)
T ss_dssp             EEEEC
T ss_pred             EEEeC
Confidence            99983

>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4

Probab=97.36  E-value=0.00075  Score=63.92  Aligned_cols=141  Identities=8%  Similarity=0.034  Sum_probs=82.4

Q ss_pred             ceeEEEEeccCcChHHHHHHHHHHhcCCCeEEEEEEeeecC-----CCCcccccccccC-Cc------chhhhhhhhhHH
Q 038269          618 SLNVAVIFIGGKDDREALAYASRVARHPAVKLTVIRFLLDN-----SENPQRRAATYKD-NT------AELEEEMKIDDE  685 (792)
Q Consensus       618 ~~~v~v~f~GG~ddreAL~~a~rma~~~~v~ltv~r~~~~~-----~~~~~~~~~~~~~-~~------~~~~~~~~~d~~  685 (792)
                      ..+|++++=|.++.+.|+++|.++++..+.+++++|+.+..     .... ...+.... ..      ...+..++..++
T Consensus         5 ~~~ILv~vD~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (162)
T 1mjh_A            5 YKKILYPTDFSETAEIALKHVKAFKTLKAEEVILLHVIDEREIKKRDIFS-LLLGVAGLNKSVEEFENELKNKLTEEAKN   83 (162)
T ss_dssp             CCEEEEECCSCHHHHHHHHHHHHTCCSSCCEEEEEEEEEGGGTC------------------CHHHHHHHHHHHHHHHHH
T ss_pred             cceEEEEeCCCHHHHHHHHHHHHHHhhcCCeEEEEEEecCcccccccccc-ccccccccccchhhhHHHHHHHHHHHHHH
Confidence            46899999999999999999999999999999999998643     1000 00000000 00      001112233445


Q ss_pred             HHHHHHHhhcCCCcEEEEEEecCChHHHHHHHHhhhc--CccEEEEecCCCCCcccccCCcccCCCCccchhhhhhhcCC
Q 038269          686 CFAEFYERQVAEGHVAYAEKHLANSSETFATLRSLEG--QYALIIVGRGERANSILTVGMNDWQQCPELGPIGDVLSGSD  763 (792)
Q Consensus       686 ~l~e~~~~~~~~~~v~y~e~~v~~~~e~~~~i~~~~~--~~dL~iVGr~~~~~s~~~~gl~~w~e~~eLG~iGd~las~d  763 (792)
                      .++++.+.... ..+.+..+ +..| +....|.+.++  ++||+|+|+++..      ++.+|    =+|-+-+-+... 
T Consensus        84 ~l~~~~~~~~~-~g~~~~~~-v~~G-~~~~~I~~~a~~~~~dlIV~G~~g~~------~~~~~----~~GSv~~~vl~~-  149 (162)
T 1mjh_A           84 KMENIKKELED-VGFKVKDI-IVVG-IPHEEIVKIAEDEGVDIIIMGSHGKT------NLKEI----LLGSVTENVIKK-  149 (162)
T ss_dssp             HHHHHHHHHHH-TTCEEEEE-EEEE-CHHHHHHHHHHHTTCSEEEEESCCSS------CCTTC----SSCHHHHHHHHH-
T ss_pred             HHHHHHHHHHH-cCCceEEE-EcCC-CHHHHHHHHHHHcCCCEEEEcCCCCC------Cccce----EecchHHHHHHh-
Confidence            66666543221 22333222 2233 34444444433  6999999997531      22222    278887777764 


Q ss_pred             CCCceeEEEEee
Q 038269          764 FLVRTSVLIIKQ  775 (792)
Q Consensus       764 ~~~~~SvLvvqq  775 (792)
                        +++.||||..
T Consensus       150 --~~~pVlvv~~  159 (162)
T 1mjh_A          150 --SNKPVLVVKR  159 (162)
T ss_dssp             --CCSCEEEECC
T ss_pred             --CCCCEEEEeC
Confidence              5689999964

>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A*

Probab=97.36  E-value=0.00077  Score=62.25  Aligned_cols=136  Identities=11%  Similarity=0.148  Sum_probs=75.8

Q ss_pred             eeEEEEeccCcC--hHHHHHHHHHHhcCCCeEEEEEEeeecCCCCcccccccccCCcchhhhhhhhhHHHHHHHHHhhcC
Q 038269          619 LNVAVIFIGGKD--DREALAYASRVARHPAVKLTVIRFLLDNSENPQRRAATYKDNTAELEEEMKIDDECFAEFYERQVA  696 (792)
Q Consensus       619 ~~v~v~f~GG~d--dreAL~~a~rma~~~~v~ltv~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~e~~~~~~~  696 (792)
                      ++|++++=|.++  .+.|+++|.++++..+.+++++|+.+........ ...........+...+.-.+.++++.++...
T Consensus         2 k~ILv~vD~s~~~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~   80 (143)
T 3fdx_A            2 NAILVPIDISDKEFTERIISHVESEARIDDAEVHFLTVIPSLPYYASL-GMAYTAELPGMDELREGSETQLKEIAKKFSI   80 (143)
T ss_dssp             CEEEEECCTTCSSCCTTHHHHHHHHHHHHTCEEEEEEEECC-----------------CHHHHHHHHHHHHHHHHTTSCC
T ss_pred             CEEEEEecCChHhhHHHHHHHHHHHHHhcCCeEEEEEEecCCcccccc-cccccchhhhHHHHHHHHHHHHHHHHHHcCC
Confidence            589999999999  9999999999999999999999998653211000 0000000000111111222334444332211


Q ss_pred             C-CcEEEEEEecCChHHHHHHHHhhhc--CccEEEEecCCCCCcccccCCcccCCCCccchhhhhhhcCCCCCceeEEEE
Q 038269          697 E-GHVAYAEKHLANSSETFATLRSLEG--QYALIIVGRGERANSILTVGMNDWQQCPELGPIGDVLSGSDFLVRTSVLII  773 (792)
Q Consensus       697 ~-~~v~y~e~~v~~~~e~~~~i~~~~~--~~dL~iVGr~~~~~s~~~~gl~~w~e~~eLG~iGd~las~d~~~~~SvLvv  773 (792)
                      . .++.+.   +..| +....|.+.++  ++||+|+|+++ .      |+.+|    =+|-+-+-+...   +++.||||
T Consensus        81 ~~~~v~~~---~~~g-~~~~~I~~~a~~~~~dliV~G~~~-~------~~~~~----~~Gs~~~~v~~~---~~~pVlvv  142 (143)
T 3fdx_A           81 PEDRMHFH---VAEG-SPKDKILALAKSLPADLVIIASHR-P------DITTY----LLGSNAAAVVRH---AECSVLVV  142 (143)
T ss_dssp             CGGGEEEE---EEES-CHHHHHHHHHHHTTCSEEEEESSC-T------TCCSC----SSCHHHHHHHHH---CSSEEEEE
T ss_pred             CCCceEEE---EEec-ChHHHHHHHHHHhCCCEEEEeCCC-C------CCeee----eeccHHHHHHHh---CCCCEEEe
Confidence            1 123322   2233 34444555543  79999999983 1      12222    267777777664   56789987

>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A

Probab=97.32  E-value=0.00099  Score=61.19  Aligned_cols=131  Identities=13%  Similarity=0.118  Sum_probs=77.6

Q ss_pred             eeEEEEeccCcChHHHHHHHHHHhcCCCeEEEEEEeeecCCCCcccccccccCCcchhhhhhhhhHHHHHHHHHhhcCCC
Q 038269          619 LNVAVIFIGGKDDREALAYASRVARHPAVKLTVIRFLLDNSENPQRRAATYKDNTAELEEEMKIDDECFAEFYERQVAEG  698 (792)
Q Consensus       619 ~~v~v~f~GG~ddreAL~~a~rma~~~~v~ltv~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~e~~~~~~~~~  698 (792)
                      .+|++++=|.++.+.|+++|.++++..+.+++++++.+......    .... .....+..++.-++.++++.++.  +-
T Consensus         3 ~~ILv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~----~~~~-~~~~~~~~~~~~~~~l~~~~~~~--g~   75 (137)
T 2z08_A            3 KTILLAYDGSEHARRAAEVAKAEAEAHGARLIVVHAYEPVPDYL----GEPF-FEEALRRRLERAEGVLEEARALT--GV   75 (137)
T ss_dssp             SEEEEECCSSHHHHHHHHHHHHHHHHHTCEEEEEEEECC-------------------CHHHHHHHHHHHHHHHHH--CC
T ss_pred             ceEEEEeCCCHHHHHHHHHHHHHHhhcCCEEEEEEEecCCCccc----cccc-hHHHHHHHHHHHHHHHHHHHHHc--CC
Confidence            58999999999999999999999999999999999985321000    0000 00001111223455666665432  22


Q ss_pred             -cEEEEEEecCChHHHHHHHHhhhc--CccEEEEecCCCCCcccccCCcccCCCCccchhhhhhhcCCCCCceeEEEE
Q 038269          699 -HVAYAEKHLANSSETFATLRSLEG--QYALIIVGRGERANSILTVGMNDWQQCPELGPIGDVLSGSDFLVRTSVLII  773 (792)
Q Consensus       699 -~v~y~e~~v~~~~e~~~~i~~~~~--~~dL~iVGr~~~~~s~~~~gl~~w~e~~eLG~iGd~las~d~~~~~SvLvv  773 (792)
                       ++.+.   +..| +....|.+.++  ++||+|+|+++..      ++.+    -=+|-+-+-+...   +++.||||
T Consensus        76 ~~~~~~---~~~g-~~~~~I~~~a~~~~~dliV~G~~~~~------~~~~----~~~Gs~~~~vl~~---~~~pVlvv  136 (137)
T 2z08_A           76 PKEDAL---LLEG-VPAEAILQAARAEKADLIVMGTRGLG------ALGS----LFLGSQSQRVVAE---APCPVLLV  136 (137)
T ss_dssp             CGGGEE---EEES-SHHHHHHHHHHHTTCSEEEEESSCTT------CCSC----SSSCHHHHHHHHH---CSSCEEEE
T ss_pred             CccEEE---EEec-CHHHHHHHHHHHcCCCEEEECCCCCc------hhhh----hhhccHHHHHHhc---CCCCEEEe
Confidence             33332   1223 34444444443  6999999997631      1222    1267777777664   56789987

>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}

Probab=97.24  E-value=0.00087  Score=70.25  Aligned_cols=133  Identities=14%  Similarity=0.047  Sum_probs=78.9

Q ss_pred             ceEEEEecCCCC-------hhhHHHHHHHhcCCCCCCceEEEEEEeeecccchhhhhcccCccccccchhhhhhhhHHHH
Q 038269          445 LQILLCLHGSQN-------ITSTLNFLEISRGTANPGVAVYVTDMIELTDQIAATLVQNEGIDTVTVTDKAVMEMREEIT  517 (792)
Q Consensus       445 lrILvcv~~~~~-------~~~li~l~~~~~~~~~sp~~v~~lhLvel~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  517 (792)
                      -|||+++...+.       ....++.+..++..  ....++++|+++.......  .+       .. + ...+..++..
T Consensus       135 ~~Ilva~D~s~~~~~~~~~s~~al~~a~~la~~--~~a~l~ll~v~~~~~~~~~--~~-------~~-~-~~~~~~~~~~  201 (290)
T 3mt0_A          135 GKILAAVDVGNNDGEHRSLHAGIISHAYDIAGL--AKATLHVISAHPSPMLSSA--DP-------TF-Q-LSETIEARYR  201 (290)
T ss_dssp             CEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHH--TTCEEEEEEEEC------------------CH-H-HHHHHHHHHH
T ss_pred             CeEEEEECCCCcchhhhHHHHHHHHHHHHHHHH--cCCeEEEEEEecCcccccc--Cc-------hh-H-HHHHHHHHHH
Confidence            489999976665       56677777776644  2367999999885432111  00       00 0 0001112222


Q ss_pred             HHHHHhhhccCcceEEEEeEeecCCCChhHHHHHHHhhcCCcEEEecCCCCccCCCccccCCcchhHHHHHHhhhCCCce
Q 038269          518 TAVQSYVDENGGGITLKRMLALSTFSGMPQDICILAEDLMVSLIILPFHKRQLEDGTLDEGHPGFRYVNRKLLRNATCSV  597 (792)
Q Consensus       518 ~af~~~~~~~~~~v~v~~~t~vs~~~~m~~dI~~~a~e~~~~liilp~h~~~~~~g~~~~~~~~~~~~n~~vl~~apCsV  597 (792)
                      +.++.+.++.  ++.........  .+..+.|++.|++.++|+|+||-|++....+      ..++++.++|++++||+|
T Consensus       202 ~~l~~~~~~~--g~~~~~~~v~~--g~~~~~I~~~a~~~~~dLiVmG~~g~~~~~~------~~~Gsv~~~vl~~~~~pV  271 (290)
T 3mt0_A          202 EACRTFQAEY--GFSDEQLHIEE--GPADVLIPRTAQKLDAVVTVIGTVARTGLSG------ALIGNTAEVVLDTLESDV  271 (290)
T ss_dssp             HHHHHHHHHH--TCCTTTEEEEE--SCHHHHHHHHHHHHTCSEEEEECCSSCCGGG------CCSCHHHHHHHTTCSSEE
T ss_pred             HHHHHHHHHc--CCCcceEEEec--cCHHHHHHHHHHhcCCCEEEECCCCCcCCcc------eecchHHHHHHhcCCCCE
Confidence            3333343321  12111111222  5789999999999999999999986644332      247788899999999998


Q ss_pred             EEE
Q 038269          598 GIL  600 (792)
Q Consensus       598 gIl  600 (792)
                      -|+
T Consensus       272 Lvv  274 (290)
T 3mt0_A          272 LVL  274 (290)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            654

>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4

Probab=97.22  E-value=0.0012  Score=62.99  Aligned_cols=139  Identities=18%  Similarity=0.152  Sum_probs=78.5

Q ss_pred             cceeEEEEeccCcChHHHHHHHHHHhcCCCeEEEEE--EeeecCCCCcccccccccCCcchhhhhhhhhHHHHHHHHHhh
Q 038269          617 ASLNVAVIFIGGKDDREALAYASRVARHPAVKLTVI--RFLLDNSENPQRRAATYKDNTAELEEEMKIDDECFAEFYERQ  694 (792)
Q Consensus       617 ~~~~v~v~f~GG~ddreAL~~a~rma~~~~v~ltv~--r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~e~~~~~  694 (792)
                      ...+|++++=|.+..+.|+++|.++++ .+.+++++  ++++.........   .. .....+..++..++.++++.+..
T Consensus        16 ~~~~ILv~vD~s~~s~~al~~A~~lA~-~~a~l~ll~a~v~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~l~~~~~~~   90 (163)
T 1tq8_A           16 AYKTVVVGTDGSDSSMRAVDRAAQIAG-ADAKLIIASAYLPQHEDARAADI---LK-DESYKVTGTAPIYEILHDAKERA   90 (163)
T ss_dssp             CCCEEEEECCSSHHHHHHHHHHHHHHT-TTSEEEEEEECCC------------------------CCTHHHHHHHHHHHH
T ss_pred             cCCEEEEEcCCCHHHHHHHHHHHHHhC-CCCEEEEEEeeeccCcccccccc---cc-cHHHHHHHHHHHHHHHHHHHHHH
Confidence            346999999999999999999999999 99999999  8765322100000   00 00000112233455666664433


Q ss_pred             cCCCcEE-EEEEecCChHHHHHHHHhhh--cCccEEEEecCCCCCcccccCCcccCCCCccchhhhhhhcCCCCCceeEE
Q 038269          695 VAEGHVA-YAEKHLANSSETFATLRSLE--GQYALIIVGRGERANSILTVGMNDWQQCPELGPIGDVLSGSDFLVRTSVL  771 (792)
Q Consensus       695 ~~~~~v~-y~e~~v~~~~e~~~~i~~~~--~~~dL~iVGr~~~~~s~~~~gl~~w~e~~eLG~iGd~las~d~~~~~SvL  771 (792)
                      .. ..+. +... +..| +..+.|.+.+  .++||+|+|+++..      ++.+|    =+|-+-+-+...   +++.||
T Consensus        91 ~~-~gv~~v~~~-v~~G-~~~~~I~~~a~~~~~DLIV~G~~g~~------~~~~~----~lGSva~~vl~~---a~~PVl  154 (163)
T 1tq8_A           91 HN-AGAKNVEER-PIVG-APVDALVNLADEEKADLLVVGNVGLS------TIAGR----LLGSVPANVSRR---AKVDVL  154 (163)
T ss_dssp             HT-TTCCEEEEE-EECS-SHHHHHHHHHHHTTCSEEEEECCCCC------SHHHH----HTBBHHHHHHHH---TTCEEE
T ss_pred             HH-cCCCeEEEE-EecC-CHHHHHHHHHHhcCCCEEEECCCCCC------cccce----eeccHHHHHHHh---CCCCEE
Confidence            22 1222 2222 2234 2344444433  56999999997532      12221    267777766654   568999


Q ss_pred             EEeee
Q 038269          772 IIKQH  776 (792)
Q Consensus       772 vvqq~  776 (792)
                      ||...
T Consensus       155 vV~~~  159 (163)
T 1tq8_A          155 IVHTT  159 (163)
T ss_dssp             EECCC
T ss_pred             EEeCC
Confidence            99754

>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4

Probab=97.20  E-value=0.0017  Score=59.71  Aligned_cols=134  Identities=13%  Similarity=0.160  Sum_probs=76.5

Q ss_pred             eeEEEEeccCcChHHHHHHHHHHhcCCCeEEEEEEeeecCCC-CcccccccccCCcchhhhhhhhhHHHHHHHHHhhcCC
Q 038269          619 LNVAVIFIGGKDDREALAYASRVARHPAVKLTVIRFLLDNSE-NPQRRAATYKDNTAELEEEMKIDDECFAEFYERQVAE  697 (792)
Q Consensus       619 ~~v~v~f~GG~ddreAL~~a~rma~~~~v~ltv~r~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~~~l~e~~~~~~~~  697 (792)
                      .+|++++=|.++.+.|+++|.++++..+.+++++++.+.... .......  . .....+..++.-++.++++.++.  +
T Consensus         3 ~~ILv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~l~~~~~~~--~   77 (141)
T 1jmv_A            3 KHILVAVDLSEESPILLKKAVGIAKRHDAKLSIIHVDVNFSDLYTGLIDV--N-MSSMQDRISTETQKALLDLAESV--D   77 (141)
T ss_dssp             SEEEEEECCSTTHHHHHHHHHHHHHHHTCEEEEEEEEECCGGGCCCCEEH--H-HHHHTTCCCCHHHHHHHHHHHHS--S
T ss_pred             ceEEEEecCchhhHHHHHHHHHHHHhcCCEEEEEEEecCchhhhcccccc--c-hHHHHHHHHHHHHHHHHHHHHHc--C
Confidence            589999999999999999999999999999999999843110 0000000  0 00000111122345666665443  2


Q ss_pred             CcEEEEEEecCChHHHHHHHHhh--hcCccEEEEecCCCCCcccccCCcccCCCCccchhhhhhhcCCCCCceeEEEEee
Q 038269          698 GHVAYAEKHLANSSETFATLRSL--EGQYALIIVGRGERANSILTVGMNDWQQCPELGPIGDVLSGSDFLVRTSVLIIKQ  775 (792)
Q Consensus       698 ~~v~y~e~~v~~~~e~~~~i~~~--~~~~dL~iVGr~~~~~s~~~~gl~~w~e~~eLG~iGd~las~d~~~~~SvLvvqq  775 (792)
                      -.+  .+..+..| +....|.+.  ..++||+|+|++ ..         .|..   +|-+-+-+...   +++.||||..
T Consensus        78 ~~~--~~~~~~~g-~~~~~I~~~a~~~~~dliV~G~~-~~---------~~~~---lgs~~~~vl~~---~~~pVlvv~~  138 (141)
T 1jmv_A           78 YPI--SEKLSGSG-DLGQVLSDAIEQYDVDLLVTGHH-QD---------FWSK---LMSSTRQVMNT---IKIDMLVVPL  138 (141)
T ss_dssp             SCC--CCEEEEEE-CHHHHHHHHHHHTTCCEEEEEEC-CC---------CHHH---HHHHHHHHHTT---CCSEEEEEEC
T ss_pred             CCc--eEEEEecC-CHHHHHHHHHHhcCCCEEEEeCC-Cc---------hhhh---hcchHHHHHhc---CCCCEEEeeC
Confidence            112  11222223 233333333  235999999987 31         1212   56666666654   5689999975


Q ss_pred             e
Q 038269          776 H  776 (792)
Q Consensus       776 ~  776 (792)
                      .
T Consensus       139 ~  139 (141)
T 1jmv_A          139 R  139 (141)
T ss_dssp             C
T ss_pred             C
Confidence            3

>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}

Probab=97.18  E-value=0.00068  Score=71.99  Aligned_cols=144  Identities=11%  Similarity=0.037  Sum_probs=83.1

Q ss_pred             ceEEEEecCCCC-------hhhHHHHHHHhcCCCCCCceEEEEEEeeecccchhhhhcccCccccccchhhhhhhhHHHH
Q 038269          445 LQILLCLHGSQN-------ITSTLNFLEISRGTANPGVAVYVTDMIELTDQIAATLVQNEGIDTVTVTDKAVMEMREEIT  517 (792)
Q Consensus       445 lrILvcv~~~~~-------~~~li~l~~~~~~~~~sp~~v~~lhLvel~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  517 (792)
                      -|||+++...+.       -...++.+..+.........++++|+++........-.+     .... +....+..++..
T Consensus       157 ~~Ilva~D~s~~~~~~~~~s~~al~~a~~la~~~~~~a~l~ll~v~~~~~~~~~~~~~-----~~~~-~~~~~~~~~~~~  230 (319)
T 3olq_A          157 GTIVVAANLSNEESYHDALNLKLIELTNDLSHRIQKDPDVHLLSAYPVAPINIAIELP-----DFDP-NLYNNALRGQHL  230 (319)
T ss_dssp             CEEEEECCCSCCSTHHHHHHHHHHHHHHHHHHHHCSSCCEEEEEEECCCSCSCCTTCT-----TCCH-HHHHHHHHHHHH
T ss_pred             CeEEEEECCCCcchhHHHHHHHHHHHHHHHHHhccCCCeEEEEEeecCcchhhhccCC-----cccH-HHHHHHHHHHHH
Confidence            489999976553       345555555554322002469999998865432110000     0000 000111123333


Q ss_pred             HHHHHhhhccCc-ceEEEEeEeecCCCChhHHHHHHHhhcCCcEEEecCCCCccCCCccccCCcchhHHHHHHhhhCCCc
Q 038269          518 TAVQSYVDENGG-GITLKRMLALSTFSGMPQDICILAEDLMVSLIILPFHKRQLEDGTLDEGHPGFRYVNRKLLRNATCS  596 (792)
Q Consensus       518 ~af~~~~~~~~~-~v~v~~~t~vs~~~~m~~dI~~~a~e~~~~liilp~h~~~~~~g~~~~~~~~~~~~n~~vl~~apCs  596 (792)
                      +.++.+.++.+. .+..+   ...  .+..+.|++.|++.++|+|+||-|++....+      ..++++.++|++++||+
T Consensus       231 ~~l~~~~~~~~~~~~~~~---v~~--g~~~~~I~~~a~~~~~dLiV~G~~g~~~~~~------~~~Gsv~~~vl~~~~~p  299 (319)
T 3olq_A          231 IAMKELRQKFSIPEEKTH---VKE--GLPEQVIPQVCEELNAGIVVLGILGRTGLSA------AFLGNTAEQLIDHIKCD  299 (319)
T ss_dssp             HHHHHHHHHTTCCGGGEE---EEE--SCHHHHHHHHHHHTTEEEEEEECCSCCSTHH------HHHHHHHHHHHTTCCSE
T ss_pred             HHHHHHHHHhCCCcccEE---Eec--CCcHHHHHHHHHHhCCCEEEEeccCccCCcc------ccccHHHHHHHhhCCCC
Confidence            445455443221 11111   122  5789999999999999999999986644322      24788999999999999


Q ss_pred             eEEEecCCC
Q 038269          597 VGILVDRGF  605 (792)
Q Consensus       597 VgIlVdrg~  605 (792)
                      |-|+-.+|+
T Consensus       300 VLvv~~~~~  308 (319)
T 3olq_A          300 LLAIKPDGF  308 (319)
T ss_dssp             EEEECCTTC
T ss_pred             EEEECCCCC
Confidence            876645554

>1q77_A Hypothetical protein AQ_178; structural genomics, universal stress protein, PSI, protein structure initiative; 2.70A {Aquifex aeolicus} SCOP: c.26.2.4

Probab=96.96  E-value=0.003  Score=57.87  Aligned_cols=38  Identities=18%  Similarity=0.223  Sum_probs=35.9

Q ss_pred             ceeEEEEeccCcChHHHHHHHHHHhcCCCeEEEEEEee
Q 038269          618 SLNVAVIFIGGKDDREALAYASRVARHPAVKLTVIRFL  655 (792)
Q Consensus       618 ~~~v~v~f~GG~ddreAL~~a~rma~~~~v~ltv~r~~  655 (792)
                      ..+|++++=|.++.+.|+++|.++++..+.+++++++.
T Consensus         4 ~~~ILv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~   41 (138)
T 1q77_A            4 MKVLLVLTDAYSDCEKAITYAVNFSEKLGAELDILAVL   41 (138)
T ss_dssp             CEEEEEEESTTCCCHHHHHHHHHHHTTTCCEEEEEEEC
T ss_pred             ccEEEEEccCCHhHHHHHHHHHHHHHHcCCeEEEEEEe
Confidence            46899999999999999999999999999999999997

>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4

Probab=96.85  E-value=0.0057  Score=58.62  Aligned_cols=143  Identities=9%  Similarity=0.104  Sum_probs=75.7

Q ss_pred             ceeEEEEeccCc---------ChHHHHHHHHHHh-cC--CCeEEEEEEeeecCCCCcccccccccCCcch-hh---hhhh
Q 038269          618 SLNVAVIFIGGK---------DDREALAYASRVA-RH--PAVKLTVIRFLLDNSENPQRRAATYKDNTAE-LE---EEMK  681 (792)
Q Consensus       618 ~~~v~v~f~GG~---------ddreAL~~a~rma-~~--~~v~ltv~r~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~  681 (792)
                      ..+|++++=|.+         ..+.|+++|.+++ +.  .+.+++++|+.......-.. .........+ ++   ..++
T Consensus         5 ~~~ILv~vD~s~~~~~~~~~~~s~~al~~a~~la~~~~~~~a~l~ll~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~   83 (175)
T 2gm3_A            5 PTKVMVAVNASTIKDYPNPSISCKRAFEWTLEKIVRSNTSDFKILLLHVQVVDEDGFDD-VDSIYASPEDFRDMRQSNKA   83 (175)
T ss_dssp             CEEEEEECCBCSSSCTTCBCHHHHHHHHHHHHHTTTTCTTSEEEEEEEEEC-----------CCCCSHHHHHHHTTSHHH
T ss_pred             ccEEEEEECCCcccccccccHHHHHHHHHHHHHhhcccCCCCEEEEEEEeecccccccc-cccccCCHHHHHHHHHHHHH
Confidence            468999999999         8899999999986 44  69999999997432110000 0000000000 01   1112


Q ss_pred             hhHHHHHHHHHhhcCCCcEEEEEEecCChHHHHHHHHhhhc--CccEEEEecCCCCCcccccCCcccCCCCccchhhhhh
Q 038269          682 IDDECFAEFYERQVAEGHVAYAEKHLANSSETFATLRSLEG--QYALIIVGRGERANSILTVGMNDWQQCPELGPIGDVL  759 (792)
Q Consensus       682 ~d~~~l~e~~~~~~~~~~v~y~e~~v~~~~e~~~~i~~~~~--~~dL~iVGr~~~~~s~~~~gl~~w~e~~eLG~iGd~l  759 (792)
                      ..++.++++.+.... ..+.+.-. +..| +....|.+.++  ++||+|+|+++..      |+.+|    =+|-+-+-+
T Consensus        84 ~~~~~l~~~~~~~~~-~g~~~~~~-v~~G-~~~~~I~~~a~~~~~DLIVmG~~g~~------~~~~~----~~Gsva~~v  150 (175)
T 2gm3_A           84 KGLHLLEFFVNKCHE-IGVGCEAW-IKTG-DPKDVICQEVKRVRPDFLVVGSRGLG------RFQKV----FVGTVSAFC  150 (175)
T ss_dssp             HHHHHHHHHHHHHHH-HTCEEEEE-EEES-CHHHHHHHHHHHHCCSEEEEEECCCC------------------CHHHHH
T ss_pred             HHHHHHHHHHHHHHH-CCCceEEE-EecC-CHHHHHHHHHHHhCCCEEEEeCCCCC------hhhhh----hcCchHHHH
Confidence            234566666443211 12333222 2233 23444444433  6999999987531      22222    267777766


Q ss_pred             hcCCCCCceeEEEEeeec
Q 038269          760 SGSDFLVRTSVLIIKQHD  777 (792)
Q Consensus       760 as~d~~~~~SvLvvqq~~  777 (792)
                      ...   +++.||||....
T Consensus       151 l~~---a~~pVlvv~~~~  165 (175)
T 2gm3_A          151 VKH---AECPVMTIKRNA  165 (175)
T ss_dssp             HHH---CSSCEEEEECCG
T ss_pred             HhC---CCCCEEEEcCCc
Confidence            654   568999998654

>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}

Probab=96.85  E-value=0.002  Score=67.54  Aligned_cols=119  Identities=12%  Similarity=0.087  Sum_probs=78.9

Q ss_pred             cceEEEEecCCCChhhHHHHHHHhcCCCCCCceEEEEEEeeecccchhhhhcccCccccccchhhhhhhhHHHHHHHHHh
Q 038269          444 QLQILLCLHGSQNITSTLNFLEISRGTANPGVAVYVTDMIELTDQIAATLVQNEGIDTVTVTDKAVMEMREEITTAVQSY  523 (792)
Q Consensus       444 elrILvcv~~~~~~~~li~l~~~~~~~~~sp~~v~~lhLvel~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~  523 (792)
                      .-||++++...+.....++.+..+...  ....++++|+.+-..                         .++.++.+..+
T Consensus       170 ~~~Ilv~~d~s~~s~~al~~a~~la~~--~~~~l~ll~v~~~~~-------------------------~~~~l~~~~~~  222 (294)
T 3loq_A          170 FDRVLVAYDFSKWADRALEYAKFVVKK--TGGELHIIHVSEDGD-------------------------KTADLRVMEEV  222 (294)
T ss_dssp             TSEEEEECCSSHHHHHHHHHHHHHHHH--HTCEEEEEEECSSSC-------------------------CHHHHHHHHHH
T ss_pred             CCEEEEEECCCHHHHHHHHHHHHHhhh--cCCEEEEEEEccCch-------------------------HHHHHHHHHHH
Confidence            358999998777777777777777643  235799999976432                         01111222222


Q ss_pred             hhccCcceEEEEeEeecCCCChhHHHHHHHhhcCCcEEEecCCCCccCCCccccCCcchhHHHHHHhhhCCCceEEE
Q 038269          524 VDENGGGITLKRMLALSTFSGMPQDICILAEDLMVSLIILPFHKRQLEDGTLDEGHPGFRYVNRKLLRNATCSVGIL  600 (792)
Q Consensus       524 ~~~~~~~v~v~~~t~vs~~~~m~~dI~~~a~e~~~~liilp~h~~~~~~g~~~~~~~~~~~~n~~vl~~apCsVgIl  600 (792)
                      -+.  .++.++... ..  .+..+.|++.|++.++|+|+||.+++....+      ..++++.+++++++||+|-|+
T Consensus       223 l~~--~~~~~~~~~-~~--g~~~~~I~~~a~~~~~dLlV~G~~~~~~~~~------~~~Gs~~~~vl~~~~~pvLvv  288 (294)
T 3loq_A          223 IGA--EGIEVHVHI-ES--GTPHKAILAKREEINATTIFMGSRGAGSVMT------MILGSTSESVIRRSPVPVFVC  288 (294)
T ss_dssp             HHH--TTCCEEEEE-EC--SCHHHHHHHHHHHTTCSEEEEECCCCSCHHH------HHHHCHHHHHHHHCSSCEEEE
T ss_pred             HHH--cCCcEEEEE-ec--CCHHHHHHHHHHhcCcCEEEEeCCCCCCccc------eeeCcHHHHHHhcCCCCEEEE
Confidence            221  134455433 23  5899999999999999999999986543321      236778899999999998553

>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*

Probab=96.78  E-value=0.0038  Score=65.96  Aligned_cols=143  Identities=17%  Similarity=0.169  Sum_probs=83.5

Q ss_pred             ccceeEEEEeccCcChHHHHHHHHHHhcCCCeEEEEEEeeecCCCCcccccccccCCcchhhhhhhhhHHHHHHHHHhhc
Q 038269          616 AASLNVAVIFIGGKDDREALAYASRVARHPAVKLTVIRFLLDNSENPQRRAATYKDNTAELEEEMKIDDECFAEFYERQV  695 (792)
Q Consensus       616 ~~~~~v~v~f~GG~ddreAL~~a~rma~~~~v~ltv~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~e~~~~~~  695 (792)
                      ....+|+++.-|.++.+.|+++|.++|++.+.++++++++......-.  .  ........+..++..++.++++++...
T Consensus        17 ~~~~~ILv~~D~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~l~~~~~~~~   92 (309)
T 3cis_A           17 NSSLGIIVGIDDSPAAQVAVRWAARDAELRKIPLTLVHAVSPEVATWL--E--VPLPPGVLRWQQDHGRHLIDDALKVVE   92 (309)
T ss_dssp             -CTTEEEEECCSSHHHHHHHHHHHHHHHHHTCCEEEEEECCCCCCCTT--C--CCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCHHHHHHHHHHHHHHHhcCCcEEEEEEecCcccccc--c--CCCCchhhHHHHHHHHHHHHHHHHHHH
Confidence            345799999999999999999999999999999999999853211000  0  000000111122223444555433211


Q ss_pred             C----CCcEEEEEEecCChHHHHHHHHhhhcCccEEEEecCCCCCcccccCCcccCCCCccchhhhhhhcCCCCCceeEE
Q 038269          696 A----EGHVAYAEKHLANSSETFATLRSLEGQYALIIVGRGERANSILTVGMNDWQQCPELGPIGDVLSGSDFLVRTSVL  771 (792)
Q Consensus       696 ~----~~~v~y~e~~v~~~~e~~~~i~~~~~~~dL~iVGr~~~~~s~~~~gl~~w~e~~eLG~iGd~las~d~~~~~SvL  771 (792)
                      .    ...+.+.-++ ..| +....|.+.++++||+|+|+++..         .|.+ .=+|-.-+-+...   +++.||
T Consensus        93 ~~~~~~~~~~~~~~~-~~g-~~~~~I~~~a~~~DliV~G~~g~~---------~~~~-~~~Gs~~~~vl~~---~~~PVl  157 (309)
T 3cis_A           93 QASLRAGPPTVHSEI-VPA-AAVPTLVDMSKDAVLMVVGCLGSG---------RWPG-RLLGSVSSGLLRH---AHCPVV  157 (309)
T ss_dssp             HHCSSSCCSCEEEEE-ESS-CHHHHHHHHGGGEEEEEEESSCTT---------CCTT-CCSCHHHHHHHHH---CSSCEE
T ss_pred             HhcccCCCceEEEEE-ecC-CHHHHHHHHhcCCCEEEECCCCCc---------cccc-cccCcHHHHHHHh---CCCCEE
Confidence            1    0122322222 233 344555555668999999997531         1221 2267777777764   578999


Q ss_pred             EEeeec
Q 038269          772 IIKQHD  777 (792)
Q Consensus       772 vvqq~~  777 (792)
                      ||....
T Consensus       158 vv~~~~  163 (309)
T 3cis_A          158 IIHDED  163 (309)
T ss_dssp             EECTTC
T ss_pred             EEcCCc
Confidence            998653

>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*

Probab=96.72  E-value=0.0051  Score=63.37  Aligned_cols=141  Identities=16%  Similarity=0.092  Sum_probs=80.9

Q ss_pred             eEEEEeccCcChHHHHHHHHHHhcCCCeEEEEEEeeecCCCCcccccccccCCcch-------hhhhhhhhHHHHHHHHH
Q 038269          620 NVAVIFIGGKDDREALAYASRVARHPAVKLTVIRFLLDNSENPQRRAATYKDNTAE-------LEEEMKIDDECFAEFYE  692 (792)
Q Consensus       620 ~v~v~f~GG~ddreAL~~a~rma~~~~v~ltv~r~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~d~~~l~e~~~  692 (792)
                      +|++++=|.+..+.|+++|.++|++.+.+++++|+.+...................       .+..++.-++.++++.+
T Consensus         2 ~ILv~vD~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~   81 (268)
T 3ab8_A            2 RILLATDGSPQARGAEALAEWLAYKLSAPLTVLFVVDTRLARIPELLDFGALTVPVPVLRTELERALALRGEAVLERVRQ   81 (268)
T ss_dssp             CEEEECCSCGGGHHHHHHHHHHHHHHTCCEEEEEEEEHHHHTHHHHC-------CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cEEEEcCCCHHHHHHHHHHHHHHHHhCCcEEEEEEeccCCcccccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            78999999999999999999999999999999999753210000000000000000       11112233456666644


Q ss_pred             hhcC-CCcEEEEEEecCChHHHHHHHHhhhcCccEEEEecCCCCCcccccCCcccCCCCccchhhhhhhcCCCCCceeEE
Q 038269          693 RQVA-EGHVAYAEKHLANSSETFATLRSLEGQYALIIVGRGERANSILTVGMNDWQQCPELGPIGDVLSGSDFLVRTSVL  771 (792)
Q Consensus       693 ~~~~-~~~v~y~e~~v~~~~e~~~~i~~~~~~~dL~iVGr~~~~~s~~~~gl~~w~e~~eLG~iGd~las~d~~~~~SvL  771 (792)
                      .... +-++.+.   +..| +....|.+.+.++||+|+|+++...     ++.+    --+|-+-+-+...   +++.||
T Consensus        82 ~~~~~g~~~~~~---~~~g-~~~~~I~~~~~~~dliV~G~~g~~~-----~~~~----~~~Gs~~~~v~~~---a~~PVl  145 (268)
T 3ab8_A           82 SALAAGVAVEAV---LEEG-VPHEAILRRARAADLLVLGRSGEAH-----GDGF----GGLGSTADRVLRA---SPVPVL  145 (268)
T ss_dssp             HHHHTTCCEEEE---EEEE-CHHHHHHHHHTTCSEEEEESSCTTS-----CTTC----CSCCHHHHHHHHH---CSSCEE
T ss_pred             HHHhCCCCeEEE---EecC-CHHHHHHhhccCCCEEEEeccCCCc-----cccc----cccchhHHHHHHh---CCCCEE
Confidence            3211 2233332   2233 2334444447789999999875310     2222    2267777777754   568999


Q ss_pred             EEeee
Q 038269          772 IIKQH  776 (792)
Q Consensus       772 vvqq~  776 (792)
                      ||...
T Consensus       146 vv~~~  150 (268)
T 3ab8_A          146 LAPGE  150 (268)
T ss_dssp             EECSS
T ss_pred             EECCC
Confidence            99864

>3g40_A Na-K-CL cotransporter; alpha/beta fold 10-stranded twisted beta sheet, transport protein; 1.90A {Methanosarcina acetivorans}

Probab=94.15  E-value=0.57  Score=48.07  Aligned_cols=221  Identities=13%  Similarity=0.109  Sum_probs=130.7

Q ss_pred             cceEEEEecCCCChhhHHHHHHHhcCCCCCCceEEEEEEeeecccchhhhhcccCccccccchhhhhhhhHHHHHHHHHh
Q 038269          444 QLQILLCLHGSQNITSTLNFLEISRGTANPGVAVYVTDMIELTDQIAATLVQNEGIDTVTVTDKAVMEMREEITTAVQSY  523 (792)
Q Consensus       444 elrILvcv~~~~~~~~li~l~~~~~~~~~sp~~v~~lhLvel~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~  523 (792)
                      .-++|+....|..-..++.++..+...+.   .+.+.++..-..  .+                 .  ..+++ .+++.|
T Consensus        20 rP~iLV~sg~p~~~~~li~la~~lt~~~G---~ltv~~i~p~~~--~~-----------------~--l~~ql-~~l~~~   74 (294)
T 3g40_A           20 KANLLVPVEDPRELMGTFDFLRDITYPKG---SVKLLGLAGNTD--KE-----------------N--LLSQL-PSISEG   74 (294)
T ss_dssp             CCEEEEEESCHHHHHHHHHHHHHHHTTTC---EEEEEECC---C--TT-----------------C--HHHHH-HHHHHH
T ss_pred             CCcEEEecCCchhhhhHHHHHHHhccCce---eEEEEEEccCCC--cc-----------------H--HHHHH-HHHHHH
Confidence            45899999999999999999999986643   566666632111  10                 0  01222 455555


Q ss_pred             hhccCcceEEEEeEeecCCCChhHHHHHHHhhc-----CCcEEEecCCCCccCCCccccCCcchhHHHHHHhhhCCCceE
Q 038269          524 VDENGGGITLKRMLALSTFSGMPQDICILAEDL-----MVSLIILPFHKRQLEDGTLDEGHPGFRYVNRKLLRNATCSVG  598 (792)
Q Consensus       524 ~~~~~~~v~v~~~t~vs~~~~m~~dI~~~a~e~-----~~~liilp~h~~~~~~g~~~~~~~~~~~~n~~vl~~apCsVg  598 (792)
                      -++  .++..-..+..+  .+.++++-+..+..     +++.|+|+|..+....       ..++.+.++.. ++--.|-
T Consensus        75 l~~--r~v~a~~~vi~a--~d~~~G~~~lvq~yglg~l~PNTilLg~~~~~e~~-------~~y~~~i~~~~-~~~~nVl  142 (294)
T 3g40_A           75 FQE--EGVFSSWTIIDT--AEFEENLVVGMEALTGSFFRPSILFLRLPENRDRD-------EEIREIIRKAS-MYRMGVL  142 (294)
T ss_dssp             HHH--TTCEEEEEEC-------CHHHHHHHHHHTTCSSCSCEEEEECCSSGGGH-------HHHHHHHHHHH-HTTCEEE
T ss_pred             HHh--CCceeEEEEEec--CChhHHHHHHHHHcCCCCCCCCEEEeCCCCChhhh-------HHHHHHHHHHH-HhCceEE
Confidence            442  235544444444  67889999988875     7899999997543321       35777775554 4455554


Q ss_pred             EEecCCCCCccccccccccceeEEEEecc--------C--cChHHHHHHHHHHhcCCCeEEEEEEeeecCCCCccccccc
Q 038269          599 ILVDRGFGSIENISRSQAASLNVAVIFIG--------G--KDDREALAYASRVARHPAVKLTVIRFLLDNSENPQRRAAT  668 (792)
Q Consensus       599 IlVdrg~~~~~~~~~~~~~~~~v~v~f~G--------G--~ddreAL~~a~rma~~~~v~ltv~r~~~~~~~~~~~~~~~  668 (792)
                      ||-+....       .....++|=+=.-|        |  ..-..++-+|-.+..+.++++.+++++++           
T Consensus       143 il~~~~~~-------~fg~~~~IdvW~~~~~~~W~~g~~~~Ng~LmlllAylL~~nW~A~I~L~~vV~d-----------  204 (294)
T 3g40_A          143 LFSKHPQA-------GLGRQNLINLWIENRGLDWDISMELGNMDLALLIAYKLKSNWKASLSFMTFAPT-----------  204 (294)
T ss_dssp             EEECCTTT-------TTTTSCEEEEECCCC---CCCCSCCCTTHHHHHHHHHHHHHHTCEEEEEEECSS-----------
T ss_pred             EEecCCcc-------CCCCCceEEEecCCCCCcccccccccchhHHHHHHHHHhhCcCCeEEEEEecCC-----------
Confidence            54322111       01112344333222        2  24466888999999999999999999863           


Q ss_pred             ccCCcchhhhhhhhhHHHHHHHHHhhcCCCcEEEEEEecCChHHHHHHHHhhhcCccEEEEecCCC
Q 038269          669 YKDNTAELEEEMKIDDECFAEFYERQVAEGHVAYAEKHLANSSETFATLRSLEGQYALIIVGRGER  734 (792)
Q Consensus       669 ~~~~~~~~~~~~~~d~~~l~e~~~~~~~~~~v~y~e~~v~~~~e~~~~i~~~~~~~dL~iVGr~~~  734 (792)
                              |.+++.-+++++++.+...-.... |   +|.  .+..+.+++. .+-||+++|=...
T Consensus       205 --------e~a~~~a~~~l~~Lv~~~Ri~a~~-~---vv~--~~F~~il~~s-~~ADL~flGl~~~  255 (294)
T 3g40_A          205 --------AIQAQAAENFLQSLAELARIPNVK-M---QVL--RENPIKSSKL-PFASLHIFSLDPN  255 (294)
T ss_dssp             --------HHHHHHHHHHHHHHHHHHTCCSCE-E---EEE--SSCTTTSSSC-CCCSEEEEECCSS
T ss_pred             --------HHHHHHHHHHHHHHHHHhcCCceE-E---Eec--CchHHHHhhC-cCCCEEEEcCCCC
Confidence                    344555677888886554222222 2   222  3455556774 6699999998654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	792
d2z3va1	135	Hypothetical protein TTHA0895 {Thermus thermophilu	98.49
d1mjha_	160	"Hypothetical" protein MJ0577 {Archaeon Methanococ	98.37
d1jmva_	140	Universal stress protein A, UspA {Haemophilus infl	98.16
d2gm3a1	171	Putative ethylene-responsive protein AT3g01520/F4P	98.02
d2z3va1	135	Hypothetical protein TTHA0895 {Thermus thermophilu	97.73
d1tq8a_	147	Hypothetical protein Rv1636 {Mycobacterium tubercu	97.69
d1q77a_	138	Hypothetical protein Aq_178 {Aquifex aeolicus [Tax	97.47
d1q77a_	138	Hypothetical protein Aq_178 {Aquifex aeolicus [Tax	97.41
d1tq8a_	147	Hypothetical protein Rv1636 {Mycobacterium tubercu	97.38
d1mjha_	160	"Hypothetical" protein MJ0577 {Archaeon Methanococ	97.31
d1jmva_	140	Universal stress protein A, UspA {Haemophilus infl	97.28
d2gm3a1	171	Putative ethylene-responsive protein AT3g01520/F4P	94.41

>d2z3va1 c.26.2.4 (A:2-136) Hypothetical protein TTHA0895 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: Universal stress protein-like
domain: Hypothetical protein TTHA0895
species: Thermus thermophilus [TaxId: 274]

Probab=98.49  E-value=1.3e-07  Score=85.41  Aligned_cols=132  Identities=15%  Similarity=0.151  Sum_probs=84.9

Q ss_pred             eEEEEecCCCChhhHHHHHHHhcCCCCCCceEEEEEEeeecccchhhhhcccCccccccchhhhhhhhHHHHHHHHHhhh
Q 038269          446 QILLCLHGSQNITSTLNFLEISRGTANPGVAVYVTDMIELTDQIAATLVQNEGIDTVTVTDKAVMEMREEITTAVQSYVD  525 (792)
Q Consensus       446 rILvcv~~~~~~~~li~l~~~~~~~~~sp~~v~~lhLvel~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~  525 (792)
                      |||+|+...++....++.+..++..  ....++++|+++-+.....    +.      ..+....+..++..+.++.+.+
T Consensus         3 ~Ilv~~D~s~~s~~a~~~a~~~a~~--~~~~l~ll~V~~~~~~~~~----~~------~~~~~~~~~~~~~~~~l~~~~~   70 (135)
T d2z3va1           3 TILLAYDGSEHARRAAEVAKAEAEA--HGARLIVVHAYEPVPDYLG----EP------FFEEALRRRLERAEGVLEEARA   70 (135)
T ss_dssp             EEEEECCSSHHHHHHHHHHHHHHHH--HTCEEEEEEEECCCCTTCC----TT------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHH--cCCEEEEEEEecCCccccc----cc------hhHHHHHHHHHHHHHHHHHHHH
Confidence            7999998888888888888887654  3467999999874322111    00      0011111222333344444443


Q ss_pred             ccCcceEEEEeEeecCCCChhHHHHHHHhhcCCcEEEecCCCCccCCCccccCCcchhHHHHHHhhhCCCceEE
Q 038269          526 ENGGGITLKRMLALSTFSGMPQDICILAEDLMVSLIILPFHKRQLEDGTLDEGHPGFRYVNRKLLRNATCSVGI  599 (792)
Q Consensus       526 ~~~~~v~v~~~t~vs~~~~m~~dI~~~a~e~~~~liilp~h~~~~~~g~~~~~~~~~~~~n~~vl~~apCsVgI  599 (792)
                      ..+  +...+....+  .+..+.||+.|++.++|+|++|.|++....+      ..++++-+++++++||+|-|
T Consensus        71 ~~~--~~~~~~~~~~--g~~~~~I~~~a~~~~~dliV~G~~~~~~~~~------~~~Gs~~~~ll~~~~~pVlv  134 (135)
T d2z3va1          71 LTG--VPKEDALLLE--GVPAEAILQAARAEKADLIVMGTRGLGALGS------LFLGSQSQRVVAEAPCPVLL  134 (135)
T ss_dssp             HHC--CCGGGEEEEE--SCHHHHHHHHHHHTTCSEEEEESSCSSSCBC------SSCBHHHHHHHHHCSSCEEE
T ss_pred             hcC--CCeEEEEEEc--CChHHHHHHHhhhhheeeEEeccCCCCcccc------cccCcHHHHHHHhCCCCEEe
Confidence            221  2222223334  6789999999999999999999996644322      24677889999999999854

>d1mjha_ c.26.2.4 (A:) "Hypothetical" protein MJ0577 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: Universal stress protein-like
domain: "Hypothetical" protein MJ0577
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.37  E-value=2.5e-06  Score=79.18  Aligned_cols=143  Identities=16%  Similarity=0.220  Sum_probs=87.3

Q ss_pred             eEEEEecCCCChhhHHHHHHHhcCCCCCCceEEEEEEeeecccchhhhhcc----cCccccccch--hhh-hhhhHHHHH
Q 038269          446 QILLCLHGSQNITSTLNFLEISRGTANPGVAVYVTDMIELTDQIAATLVQN----EGIDTVTVTD--KAV-MEMREEITT  518 (792)
Q Consensus       446 rILvcv~~~~~~~~li~l~~~~~~~~~sp~~v~~lhLvel~~r~~~~~~~~----~~~~~~~~~~--~~~-~~~~~~i~~  518 (792)
                      |||+++...+.....++.+..++..  ....++++|+++..........+.    ...+. ...+  ... .+..++..+
T Consensus         5 ~ILvavD~s~~s~~al~~a~~la~~--~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~   81 (160)
T d1mjha_           5 KILYPTDFSETAEIALKHVKAFKTL--KAEEVILLHVIDEREIKKRDIFSLLLGVAGLNK-SVEEFENELKNKLTEEAKN   81 (160)
T ss_dssp             EEEEECCSCHHHHHHHHHHHHTCCS--SCCEEEEEEEEEGGGTC------------------CHHHHHHHHHHHHHHHHH
T ss_pred             eEEEEECCCHHHHHHHHHHHHHHHh--cCCEEEEEEecccccccccccccccccccccch-hHHHHHHHHHHHHHHHHHH
Confidence            7999998777888888888888755  346899999998765432211110    00000 0000  000 001122222


Q ss_pred             HHHHhhhc-cCcceEEEEeEeecCCCChhHHHHHHHhhcCCcEEEecCCCCccCCCccccCCcchhHHHHHHhhhCCCce
Q 038269          519 AVQSYVDE-NGGGITLKRMLALSTFSGMPQDICILAEDLMVSLIILPFHKRQLEDGTLDEGHPGFRYVNRKLLRNATCSV  597 (792)
Q Consensus       519 af~~~~~~-~~~~v~v~~~t~vs~~~~m~~dI~~~a~e~~~~liilp~h~~~~~~g~~~~~~~~~~~~n~~vl~~apCsV  597 (792)
                      .++.+.+. ...++.++.....   -+..+.||+.|++.++|+|++|.|.+....+      ..++++.+++++++||+|
T Consensus        82 ~l~~~~~~~~~~gv~~~~~~~~---G~~~~~I~~~a~~~~~dliV~G~~~~~~~~~------~~~GS~a~~vl~~s~~pV  152 (160)
T d1mjha_          82 KMENIKKELEDVGFKVKDIIVV---GIPHEEIVKIAEDEGVDIIIMGSHGKTNLKE------ILLGSVTENVIKKSNKPV  152 (160)
T ss_dssp             HHHHHHHHHHHTTCEEEEEEEE---ECHHHHHHHHHHHTTCSEEEEESCCSSCCTT------CSSCHHHHHHHHHCCSCE
T ss_pred             HHHHHHHHHHhcCCeEEEEEEe---ccHHHHHhhhhhccccceEEeccCCCCcccc------cccCcHHHHHHhcCCCCE
Confidence            33333211 0235777766554   4689999999999999999999986544332      236788899999999998


Q ss_pred             EEE
Q 038269          598 GIL  600 (792)
Q Consensus       598 gIl  600 (792)
                      -|+
T Consensus       153 lvV  155 (160)
T d1mjha_         153 LVV  155 (160)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            554

>d1jmva_ c.26.2.4 (A:) Universal stress protein A, UspA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: Universal stress protein-like
domain: Universal stress protein A, UspA
species: Haemophilus influenzae [TaxId: 727]

Probab=98.16  E-value=2e-06  Score=77.83  Aligned_cols=133  Identities=11%  Similarity=0.083  Sum_probs=87.2

Q ss_pred             eEEEEecCCCChhhHHHHHHHhcCCCCCCceEEEEEEeeecccchhhhhcccCccccccchhhhhhhhHHHHHHHHHhhh
Q 038269          446 QILLCLHGSQNITSTLNFLEISRGTANPGVAVYVTDMIELTDQIAATLVQNEGIDTVTVTDKAVMEMREEITTAVQSYVD  525 (792)
Q Consensus       446 rILvcv~~~~~~~~li~l~~~~~~~~~sp~~v~~lhLvel~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~  525 (792)
                      |||+|+...+..+..+..+..++..  ....++++|+++-.....+-..+       ........+..++..+.++...+
T Consensus         4 ~ILv~vD~s~~s~~al~~A~~~a~~--~~~~v~~lhv~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~   74 (140)
T d1jmva_           4 HILVAVDLSEESPILLKKAVGIAKR--HDAKLSIIHVDVNFSDLYTGLID-------VNMSSMQDRISTETQKALLDLAE   74 (140)
T ss_dssp             EEEEEECCSTTHHHHHHHHHHHHHH--HTCEEEEEEEEECCGGGCCCCEE-------HHHHHHTTCCCCHHHHHHHHHHH
T ss_pred             eEEEEECCCHHHHHHHHHHHHHHHH--cCCeEEEEEEeeecccccccccc-------cchHHHHHHHHHHHHHHHHHHHH
Confidence            7999999888999999988887754  34679999998865432221100       00000111123444455555544


Q ss_pred             ccCcceEEEEeEeecCCCChhHHHHHHHhhcCCcEEEecCCCCccCCCccccCCcchhHHHHHHhhhCCCceEEE
Q 038269          526 ENGGGITLKRMLALSTFSGMPQDICILAEDLMVSLIILPFHKRQLEDGTLDEGHPGFRYVNRKLLRNATCSVGIL  600 (792)
Q Consensus       526 ~~~~~v~v~~~t~vs~~~~m~~dI~~~a~e~~~~liilp~h~~~~~~g~~~~~~~~~~~~n~~vl~~apCsVgIl  600 (792)
                      ..+  ..........  .+..+.|++.|++.++|+|++|.|++..         ..+++.-+++++++||+|-|.
T Consensus        75 ~~~--~~~~~~~~~~--~~~~~~I~~~a~~~~~dliV~G~~~~~~---------~~lgs~~~~li~~~~~pVliV  136 (140)
T d1jmva_          75 SVD--YPISEKLSGS--GDLGQVLSDAIEQYDVDLLVTGHHQDFW---------SKLMSSTRQVMNTIKIDMLVV  136 (140)
T ss_dssp             HSS--SCCCCEEEEE--ECHHHHHHHHHHHTTCCEEEEEECCCCH---------HHHHHHHHHHHTTCCSEEEEE
T ss_pred             hcC--CceEEEEEEe--cCHHHHHHHhhhhchhhEEEeccCCCCC---------CCcccHHHHHHhccCCCEEEE
Confidence            322  2233334444  7899999999999999999999874421         126778899999999998654

>d2gm3a1 c.26.2.4 (A:5-175) Putative ethylene-responsive protein AT3g01520/F4P13_7 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: Universal stress protein-like
domain: Putative ethylene-responsive protein AT3g01520/F4P13 7
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.02  E-value=1.4e-05  Score=74.96  Aligned_cols=146  Identities=7%  Similarity=0.041  Sum_probs=77.7

Q ss_pred             ceEEEEecCCC---------ChhhHHHHH-HHhcCCCCCCceEEEEEEeeecccchhhhhcccCccccccchh---hhhh
Q 038269          445 LQILLCLHGSQ---------NITSTLNFL-EISRGTANPGVAVYVTDMIELTDQIAATLVQNEGIDTVTVTDK---AVME  511 (792)
Q Consensus       445 lrILvcv~~~~---------~~~~li~l~-~~~~~~~~sp~~v~~lhLvel~~r~~~~~~~~~~~~~~~~~~~---~~~~  511 (792)
                      -||++|+.+.+         .-..-++.+ +......++...++++|..+......+......  ........   ...+
T Consensus         2 ~ki~vavd~s~~~~~~~~~~~S~~Al~wal~~~~~~~~~~~~L~~vhv~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~   79 (171)
T d2gm3a1           2 TKVMVAVNASTIKDYPNPSISCKRAFEWTLEKIVRSNTSDFKILLLHVQVVDEDGFDDVDSIY--ASPEDFRDMRQSNKA   79 (171)
T ss_dssp             EEEEEECCBCSSSCTTCBCHHHHHHHHHHHHHTTTTCTTSEEEEEEEEEC----------CCC--CSHHHHHHHTTSHHH
T ss_pred             CEEEEEEcCCcccCCCCCCHHHHHHHHHHHHHHHHCCCCCcEEEEEEeccccccccccccccc--cCHHHHHHHHHHHHH
Confidence            38999997543         122333332 333444456678999998775543322111000  00000000   1112


Q ss_pred             hhHHHHHHHHHhhhccCcceEEEEeEeecCCCChhHHHHHHHhhcCCcEEEecCCCCccCCCccccCCcchhHHHHHHhh
Q 038269          512 MREEITTAVQSYVDENGGGITLKRMLALSTFSGMPQDICILAEDLMVSLIILPFHKRQLEDGTLDEGHPGFRYVNRKLLR  591 (792)
Q Consensus       512 ~~~~i~~af~~~~~~~~~~v~v~~~t~vs~~~~m~~dI~~~a~e~~~~liilp~h~~~~~~g~~~~~~~~~~~~n~~vl~  591 (792)
                      ..+++++.++.-..  ..++.++..+.-   .+..+.||+.|++.++|+|+||.|.+....+      ..++++.++|++
T Consensus        80 ~~~~~l~~~~~~~~--~~~~~~~~~v~~---G~~~~~I~~~a~~~~~dlIV~G~~g~~~~~~------~~lGSv~~~vi~  148 (171)
T d2gm3a1          80 KGLHLLEFFVNKCH--EIGVGCEAWIKT---GDPKDVICQEVKRVRPDFLVVGSRGLGRFQK------VFVGTVSAFCVK  148 (171)
T ss_dssp             HHHHHHHHHHHHHH--HHTCEEEEEEEE---SCHHHHHHHHHHHHCCSEEEEEECCCC--------------CHHHHHHH
T ss_pred             HHHHHHHHHHHHHH--hcCCceEEEEEe---CChHHHHHHHHhhcCCcEEEeccCCcccccc------CccCcHHHHHHh
Confidence            23444444443332  234677665433   5789999999999999999999996533322      246788899999


Q ss_pred             hCCCceEEEecCC
Q 038269          592 NATCSVGILVDRG  604 (792)
Q Consensus       592 ~apCsVgIlVdrg  604 (792)
                      ++||+|-| |.++
T Consensus       149 ~~~cpVlv-V~~~  160 (171)
T d2gm3a1         149 HAECPVMT-IKRN  160 (171)
T ss_dssp             HCSSCEEE-EECC
T ss_pred             CCCCCEEE-EeCC
Confidence            99999955 5553

>d2z3va1 c.26.2.4 (A:2-136) Hypothetical protein TTHA0895 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: Universal stress protein-like
domain: Hypothetical protein TTHA0895
species: Thermus thermophilus [TaxId: 274]

Probab=97.73  E-value=2.2e-05  Score=70.28  Aligned_cols=130  Identities=13%  Similarity=0.142  Sum_probs=78.4

Q ss_pred             eeEEEEeccCcChHHHHHHHHHHhcCCCeEEEEEEeeecCCCCcccccccccCCcchhh--hhhhhhHHHHHHHHHhhcC
Q 038269          619 LNVAVIFIGGKDDREALAYASRVARHPAVKLTVIRFLLDNSENPQRRAATYKDNTAELE--EEMKIDDECFAEFYERQVA  696 (792)
Q Consensus       619 ~~v~v~f~GG~ddreAL~~a~rma~~~~v~ltv~r~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~d~~~l~e~~~~~~~  696 (792)
                      ++|++|+=|.+..+.|+++|..||++.+.+++++|+.+.......       ....++.  .+.+.-++.++++.+.. .
T Consensus         2 k~Ilv~~D~s~~s~~a~~~a~~~a~~~~~~l~ll~V~~~~~~~~~-------~~~~~~~~~~~~~~~~~~l~~~~~~~-~   73 (135)
T d2z3va1           2 KTILLAYDGSEHARRAAEVAKAEAEAHGARLIVVHAYEPVPDYLG-------EPFFEEALRRRLERAEGVLEEARALT-G   73 (135)
T ss_dssp             CEEEEECCSSHHHHHHHHHHHHHHHHHTCEEEEEEEECCCCTTCC-------TTHHHHHHHHHHHHHHHHHHHHHHHH-C
T ss_pred             CEEEEEECCCHHHHHHHHHHHHHHHHcCCEEEEEEEecCCccccc-------cchhHHHHHHHHHHHHHHHHHHHHhc-C
Confidence            589999999999999999999999999999999999864321100       0001111  11222335566664432 1


Q ss_pred             CCcEEEEEEecCChHHHHHHHHhh--hcCccEEEEecCCCCCcccccCCcccCCCCccchhhhhhhcCCCCCceeEEEE
Q 038269          697 EGHVAYAEKHLANSSETFATLRSL--EGQYALIIVGRGERANSILTVGMNDWQQCPELGPIGDVLSGSDFLVRTSVLII  773 (792)
Q Consensus       697 ~~~v~y~e~~v~~~~e~~~~i~~~--~~~~dL~iVGr~~~~~s~~~~gl~~w~e~~eLG~iGd~las~d~~~~~SvLvv  773 (792)
                      ....   +.++.+| +...+|.+.  ..+.||+|+|+++..      ++.+|    =+|-..+-+...   ++++||||
T Consensus        74 ~~~~---~~~~~~g-~~~~~I~~~a~~~~~dliV~G~~~~~------~~~~~----~~Gs~~~~ll~~---~~~pVlvV  135 (135)
T d2z3va1          74 VPKE---DALLLEG-VPAEAILQAARAEKADLIVMGTRGLG------ALGSL----FLGSQSQRVVAE---APCPVLLV  135 (135)
T ss_dssp             CCGG---GEEEEES-CHHHHHHHHHHHTTCSEEEEESSCSS------SCBCS----SCBHHHHHHHHH---CSSCEEEE
T ss_pred             CCeE---EEEEEcC-ChHHHHHHHhhhhheeeEEeccCCCC------ccccc----ccCcHHHHHHHh---CCCCEEeC
Confidence            1111   1222222 233333333  336999999987631      22332    268888888764   56789987

>d1tq8a_ c.26.2.4 (A:) Hypothetical protein Rv1636 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: Universal stress protein-like
domain: Hypothetical protein Rv1636
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.69  E-value=7.1e-05  Score=67.67  Aligned_cols=137  Identities=12%  Similarity=0.081  Sum_probs=77.8

Q ss_pred             eEEEEecCCCChhhHHHHHHHhcCCCCCCceEEEEEEeeecccchhhhhcccCccccccchhhhhhhhHHHHHHHHHhhh
Q 038269          446 QILLCLHGSQNITSTLNFLEISRGTANPGVAVYVTDMIELTDQIAATLVQNEGIDTVTVTDKAVMEMREEITTAVQSYVD  525 (792)
Q Consensus       446 rILvcv~~~~~~~~li~l~~~~~~~~~sp~~v~~lhLvel~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~  525 (792)
                      |||+++...+.....++.+..++..  ..-.+++++.++......... .... ....  . ...+..++.++.++....
T Consensus         7 ~ILv~vD~s~~s~~al~~A~~la~~--~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~--~-~~~~~~~~~l~~~~~~~~   79 (147)
T d1tq8a_           7 TVVVGTDGSDSSMRAVDRAAQIAGA--DAKLIIASAYLPQHEDARAAD-ILKD-ESYK--V-TGTAPIYEILHDAKERAH   79 (147)
T ss_dssp             EEEEECCSSHHHHHHHHHHHHHHTT--TSEEEEEEECCC-------------------------CCTHHHHHHHHHHHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHhc--CCCEEEEEEEecccccccccc-cchh-hhHH--H-HHHHHHHHHHHHHHHHHH
Confidence            7999998888888888888887743  223344434333222211110 0000 0000  0 111224555565655544


Q ss_pred             ccCcceEEEEeEeecCCCChhHHHHHHHhhcCCcEEEecCCCCccCCCccccCCcchhHHHHHHhhhCCCceEE
Q 038269          526 ENGGGITLKRMLALSTFSGMPQDICILAEDLMVSLIILPFHKRQLEDGTLDEGHPGFRYVNRKLLRNATCSVGI  599 (792)
Q Consensus       526 ~~~~~v~v~~~t~vs~~~~m~~dI~~~a~e~~~~liilp~h~~~~~~g~~~~~~~~~~~~n~~vl~~apCsVgI  599 (792)
                      +. +...++.....   .+..+.|++.|++.++|+|++|.|.+....+      ..++++.+++++++||+|-|
T Consensus        80 ~~-~~~~~~~~~~~---G~~~~~i~~~a~~~~~dlIv~g~~~~~~~~~------~l~Gs~~~~ll~~~~~pVlv  143 (147)
T d1tq8a_          80 NA-GAKNVEERPIV---GAPVDALVNLADEEKADLLVVGNVGLSTIAG------RLLGSVPANVSRRAKVDVLI  143 (147)
T ss_dssp             TT-TCCEEEEEEEC---SSHHHHHHHHHHHTTCSEEEEECCCCCSHHH------HHTBBHHHHHHHHTTCEEEE
T ss_pred             Hc-CCCcEEEEEEe---cChHHHHHHhhhccceeEEEecCCCCCcccc------cccccHHHHHHHhCCCCEEE
Confidence            32 22334443332   5789999999999999999999986533221      23566778999999999844

>d1q77a_ c.26.2.4 (A:) Hypothetical protein Aq_178 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: Universal stress protein-like
domain: Hypothetical protein Aq 178
species: Aquifex aeolicus [TaxId: 63363]

Probab=97.47  E-value=0.00023  Score=63.26  Aligned_cols=40  Identities=20%  Similarity=0.208  Sum_probs=37.3

Q ss_pred             cceeEEEEeccCcChHHHHHHHHHHhcCCCeEEEEEEeee
Q 038269          617 ASLNVAVIFIGGKDDREALAYASRVARHPAVKLTVIRFLL  656 (792)
Q Consensus       617 ~~~~v~v~f~GG~ddreAL~~a~rma~~~~v~ltv~r~~~  656 (792)
                      .-++|+++.=|.++.+.|+++|.++|++.+.+++++|++.
T Consensus         3 ~mk~ILv~~D~S~~s~~al~~A~~~a~~~~a~l~llhv~~   42 (138)
T d1q77a_           3 AMKVLLVLTDAYSDCEKAITYAVNFSEKLGAELDILAVLE   42 (138)
T ss_dssp             CCEEEEEEESTTCCCHHHHHHHHHHHTTTCCEEEEEEECH
T ss_pred             CCCEEEEEEeCCHHHHHHHHHHHHhhhhccceEEEEEEcc
Confidence            3468999999999999999999999999999999999985

>d1q77a_ c.26.2.4 (A:) Hypothetical protein Aq_178 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: Universal stress protein-like
domain: Hypothetical protein Aq 178
species: Aquifex aeolicus [TaxId: 63363]

Probab=97.41  E-value=0.00042  Score=61.49  Aligned_cols=129  Identities=5%  Similarity=0.004  Sum_probs=79.6

Q ss_pred             eEEEEecCCCChhhHHHHHHHhcCCCCCCceEEEEEEeeecccchhhhhcccCccccccchhhhhhh-hHHHHHHHHHhh
Q 038269          446 QILLCLHGSQNITSTLNFLEISRGTANPGVAVYVTDMIELTDQIAATLVQNEGIDTVTVTDKAVMEM-REEITTAVQSYV  524 (792)
Q Consensus       446 rILvcv~~~~~~~~li~l~~~~~~~~~sp~~v~~lhLvel~~r~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~af~~~~  524 (792)
                      +||+|+...+.....++.+..++...  ...++++|++|...................... ...+. .+.+-+..+.+.
T Consensus         6 ~ILv~~D~S~~s~~al~~A~~~a~~~--~a~l~llhv~~~~~~~~~~~~~~~~~~~~~~~e-~~~~~~~~~l~~~~~~~~   82 (138)
T d1q77a_           6 VLLVLTDAYSDCEKAITYAVNFSEKL--GAELDILAVLEDVYNLERANVTFGLPFPPEIKE-ESKKRIERRLREVWEKLT   82 (138)
T ss_dssp             EEEEEESTTCCCHHHHHHHHHHHTTT--CCEEEEEEECHHHHHHHHHHHHHCCCCCTHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEEeCCHHHHHHHHHHHHhhhhc--cceEEEEEEccCcccccccccccccchhhhhhh-hhhhhccccchhhccccc
Confidence            79999999999999999999988653  468999999985443333222211111100000 11111 222223333333


Q ss_pred             hccCcceEEEEeEeecCCCChhHHHHHHHhhcCCcEEEecCCCCccCCCccccCCcchhHHHHHHhhhCCCceE
Q 038269          525 DENGGGITLKRMLALSTFSGMPQDICILAEDLMVSLIILPFHKRQLEDGTLDEGHPGFRYVNRKLLRNATCSVG  598 (792)
Q Consensus       525 ~~~~~~v~v~~~t~vs~~~~m~~dI~~~a~e~~~~liilp~h~~~~~~g~~~~~~~~~~~~n~~vl~~apCsVg  598 (792)
                      .   .++.++.....   -+..+.|++.|++.++|||++|.|.+..               -.+++..+.|++-
T Consensus        83 ~---~~~~~~~~v~~---G~~~~~I~~~a~~~~~DLIV~Gs~g~~~---------------l~r~l~g~~~~~l  135 (138)
T d1q77a_          83 G---STEIPGVEYRI---GPLSEEVKKFVEGKGYELVVWACYPSAY---------------LCKVIDGLNLASL  135 (138)
T ss_dssp             S---CCCCCCEEEEC---SCHHHHHHHHHTTSCCSEEEECSCCGGG---------------THHHHHHSSSEEE
T ss_pred             c---cceeEEEeeec---chhHHHHHHhhhhccCCEEEEecCCCcH---------------HHHHhcCCCCCEE
Confidence            2   23333333322   5799999999999999999999984311               1478888888863

>d1tq8a_ c.26.2.4 (A:) Hypothetical protein Rv1636 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: Universal stress protein-like
domain: Hypothetical protein Rv1636
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.38  E-value=0.00022  Score=64.23  Aligned_cols=139  Identities=18%  Similarity=0.160  Sum_probs=76.0

Q ss_pred             ceeEEEEeccCcChHHHHHHHHHHhcCCCeEEEEEEeeecCCCCcccccccccCCcchhhhhhhhhHHHHHHHHHhhcCC
Q 038269          618 SLNVAVIFIGGKDDREALAYASRVARHPAVKLTVIRFLLDNSENPQRRAATYKDNTAELEEEMKIDDECFAEFYERQVAE  697 (792)
Q Consensus       618 ~~~v~v~f~GG~ddreAL~~a~rma~~~~v~ltv~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~e~~~~~~~~  697 (792)
                      .++|+++.=|.++.+.|+++|.++++..+..+++..+.+..........   .......+.+++..++.++++++.....
T Consensus         5 yk~ILv~vD~s~~s~~al~~A~~la~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~   81 (147)
T d1tq8a_           5 YKTVVVGTDGSDSSMRAVDRAAQIAGADAKLIIASAYLPQHEDARAADI---LKDESYKVTGTAPIYEILHDAKERAHNA   81 (147)
T ss_dssp             CCEEEEECCSSHHHHHHHHHHHHHHTTTSEEEEEEECCC-----------------------CCTHHHHHHHHHHHHHTT
T ss_pred             CCEEEEEECCCHHHHHHHHHHHHHHhcCCCEEEEEEEeccccccccccc---chhhhHHHHHHHHHHHHHHHHHHHHHHc
Confidence            3689999999999999999999999888887777666543221110000   0000112233344555666664432222


Q ss_pred             CcEEEEEEecCChHHHHHHHHhh--hcCccEEEEecCCCCCcccccCCcccCCCCccchhhhhhhcCCCCCceeEEEEe
Q 038269          698 GHVAYAEKHLANSSETFATLRSL--EGQYALIIVGRGERANSILTVGMNDWQQCPELGPIGDVLSGSDFLVRTSVLIIK  774 (792)
Q Consensus       698 ~~v~y~e~~v~~~~e~~~~i~~~--~~~~dL~iVGr~~~~~s~~~~gl~~w~e~~eLG~iGd~las~d~~~~~SvLvvq  774 (792)
                      + +...+..+..|.- ...|.+.  ..++||+|+|+++..      ++    +..=+|-+.+-++-.   +++.||||.
T Consensus        82 ~-~~~~~~~~~~G~~-~~~i~~~a~~~~~dlIv~g~~~~~------~~----~~~l~Gs~~~~ll~~---~~~pVlvV~  145 (147)
T d1tq8a_          82 G-AKNVEERPIVGAP-VDALVNLADEEKADLLVVGNVGLS------TI----AGRLLGSVPANVSRR---AKVDVLIVH  145 (147)
T ss_dssp             T-CCEEEEEEECSSH-HHHHHHHHHHTTCSEEEEECCCCC------SH----HHHHTBBHHHHHHHH---TTCEEEEEC
T ss_pred             C-CCcEEEEEEecCh-HHHHHHhhhccceeEEEecCCCCC------cc----cccccccHHHHHHHh---CCCCEEEEe
Confidence            2 2223444445542 3333333  346999999997631      11    112357666766654   567899885

>d1mjha_ c.26.2.4 (A:) "Hypothetical" protein MJ0577 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: Universal stress protein-like
domain: "Hypothetical" protein MJ0577
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.31  E-value=0.00053  Score=62.66  Aligned_cols=143  Identities=10%  Similarity=0.067  Sum_probs=82.0

Q ss_pred             ceeEEEEeccCcChHHHHHHHHHHhcCCCeEEEEEEeeecCCCCcc----cccccccCCcchhhhhh----h---hhHHH
Q 038269          618 SLNVAVIFIGGKDDREALAYASRVARHPAVKLTVIRFLLDNSENPQ----RRAATYKDNTAELEEEM----K---IDDEC  686 (792)
Q Consensus       618 ~~~v~v~f~GG~ddreAL~~a~rma~~~~v~ltv~r~~~~~~~~~~----~~~~~~~~~~~~~~~~~----~---~d~~~  686 (792)
                      .+||+++.=|++..++|+.+|..+|+..+.+|+++|+++.......    ............++.+.    +   .-++.
T Consensus         3 ~~~ILvavD~s~~s~~al~~a~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (160)
T d1mjha_           3 YKKILYPTDFSETAEIALKHVKAFKTLKAEEVILLHVIDEREIKKRDIFSLLLGVAGLNKSVEEFENELKNKLTEEAKNK   82 (160)
T ss_dssp             CCEEEEECCSCHHHHHHHHHHHHTCCSSCCEEEEEEEEEGGGTC-----------------CHHHHHHHHHHHHHHHHHH
T ss_pred             cCeEEEEECCCHHHHHHHHHHHHHHHhcCCEEEEEEecccccccccccccccccccccchhHHHHHHHHHHHHHHHHHHH
Confidence            3699999999999999999999999999999999999864322100    00000000000011111    1   11244


Q ss_pred             HHHHHHhhcCCCcEEEEEEecCChHHHHHHHHhh--hcCccEEEEecCCCCCcccccCCcccCCCCccchhhhhhhcCCC
Q 038269          687 FAEFYERQVAEGHVAYAEKHLANSSETFATLRSL--EGQYALIIVGRGERANSILTVGMNDWQQCPELGPIGDVLSGSDF  764 (792)
Q Consensus       687 l~e~~~~~~~~~~v~y~e~~v~~~~e~~~~i~~~--~~~~dL~iVGr~~~~~s~~~~gl~~w~e~~eLG~iGd~las~d~  764 (792)
                      ++++..+.. ...+.+..++. .| +....|.+.  ..++||+|+|+++..      ++.+|    =+|-.-+-++..  
T Consensus        83 l~~~~~~~~-~~gv~~~~~~~-~G-~~~~~I~~~a~~~~~dliV~G~~~~~------~~~~~----~~GS~a~~vl~~--  147 (160)
T d1mjha_          83 MENIKKELE-DVGFKVKDIIV-VG-IPHEEIVKIAEDEGVDIIIMGSHGKT------NLKEI----LLGSVTENVIKK--  147 (160)
T ss_dssp             HHHHHHHHH-HTTCEEEEEEE-EE-CHHHHHHHHHHHTTCSEEEEESCCSS------CCTTC----SSCHHHHHHHHH--
T ss_pred             HHHHHHHHH-hcCCeEEEEEE-ec-cHHHHHhhhhhccccceEEeccCCCC------ccccc----ccCcHHHHHHhc--
Confidence            444433321 23455544433 34 344444443  346999999986531      12221    257777777764  


Q ss_pred             CCceeEEEEeee
Q 038269          765 LVRTSVLIIKQH  776 (792)
Q Consensus       765 ~~~~SvLvvqq~  776 (792)
                       ++++||||+.+
T Consensus       148 -s~~pVlvV~~~  158 (160)
T d1mjha_         148 -SNKPVLVVKRK  158 (160)
T ss_dssp             -CCSCEEEECCC
T ss_pred             -CCCCEEEEcCC
Confidence             67899999875

>d1jmva_ c.26.2.4 (A:) Universal stress protein A, UspA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: Universal stress protein-like
domain: Universal stress protein A, UspA
species: Haemophilus influenzae [TaxId: 727]

Probab=97.28  E-value=0.0005  Score=61.22  Aligned_cols=132  Identities=11%  Similarity=0.113  Sum_probs=76.4

Q ss_pred             eeEEEEeccCcChHHHHHHHHHHhcCCCeEEEEEEeeecCCCCcccccccccCCcchhhhhh---hhhHHHHHHHHHhhc
Q 038269          619 LNVAVIFIGGKDDREALAYASRVARHPAVKLTVIRFLLDNSENPQRRAATYKDNTAELEEEM---KIDDECFAEFYERQV  695 (792)
Q Consensus       619 ~~v~v~f~GG~ddreAL~~a~rma~~~~v~ltv~r~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~d~~~l~e~~~~~~  695 (792)
                      +||+++.=|.+.++.|+++|.+++++.+.+++++|+.+........     ......++.++   +.-++.+++...+. 
T Consensus         3 k~ILv~vD~s~~s~~al~~A~~~a~~~~~~v~~lhv~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~-   76 (140)
T d1jmva_           3 KHILVAVDLSEESPILLKKAVGIAKRHDAKLSIIHVDVNFSDLYTG-----LIDVNMSSMQDRISTETQKALLDLAESV-   76 (140)
T ss_dssp             SEEEEEECCSTTHHHHHHHHHHHHHHHTCEEEEEEEEECCGGGCCC-----CEEHHHHHHTTCCCCHHHHHHHHHHHHS-
T ss_pred             CeEEEEECCCHHHHHHHHHHHHHHHHcCCeEEEEEEeeeccccccc-----ccccchHHHHHHHHHHHHHHHHHHHHhc-
Confidence            5899999999999999999999999999999999998643211000     00000011111   12223444443332 


Q ss_pred             CCCcEEEEEEecCChHHHH-HHHHhhhcCccEEEEecCCCCCcccccCCcccCCCCccchhhhhhhcCCCCCceeEEEEe
Q 038269          696 AEGHVAYAEKHLANSSETF-ATLRSLEGQYALIIVGRGERANSILTVGMNDWQQCPELGPIGDVLSGSDFLVRTSVLIIK  774 (792)
Q Consensus       696 ~~~~v~y~e~~v~~~~e~~-~~i~~~~~~~dL~iVGr~~~~~s~~~~gl~~w~e~~eLG~iGd~las~d~~~~~SvLvvq  774 (792)
                      ......+. ....+..+.+ +..++  .+.||+|+|+++..          |.   .||..-|.+...   +++.||||.
T Consensus        77 ~~~~~~~~-~~~~~~~~~I~~~a~~--~~~dliV~G~~~~~----------~~---~lgs~~~~li~~---~~~pVliVp  137 (140)
T d1jmva_          77 DYPISEKL-SGSGDLGQVLSDAIEQ--YDVDLLVTGHHQDF----------WS---KLMSSTRQVMNT---IKIDMLVVP  137 (140)
T ss_dssp             SSCCCCEE-EEEECHHHHHHHHHHH--TTCCEEEEEECCCC----------HH---HHHHHHHHHHTT---CCSEEEEEE
T ss_pred             CCceEEEE-EEecCHHHHHHHhhhh--chhhEEEeccCCCC----------CC---CcccHHHHHHhc---cCCCEEEEe
Confidence            11112111 1122333322 22332  34899999986531          11   277777877775   678999986


Q ss_pred             e
Q 038269          775 Q  775 (792)
Q Consensus       775 q  775 (792)
                      .
T Consensus       138 ~  138 (140)
T d1jmva_         138 L  138 (140)
T ss_dssp             C
T ss_pred             c
Confidence            4

>d2gm3a1 c.26.2.4 (A:5-175) Putative ethylene-responsive protein AT3g01520/F4P13_7 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: Universal stress protein-like
domain: Putative ethylene-responsive protein AT3g01520/F4P13 7
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=94.41  E-value=0.12  Score=46.84  Aligned_cols=148  Identities=9%  Similarity=0.075  Sum_probs=72.3

Q ss_pred             eEEEEeccCc---------ChHHHHHHHHHHhcC---CCeEEEEEEeeecCCCCcccccccccCCc----chhhhhhhhh
Q 038269          620 NVAVIFIGGK---------DDREALAYASRVARH---PAVKLTVIRFLLDNSENPQRRAATYKDNT----AELEEEMKID  683 (792)
Q Consensus       620 ~v~v~f~GG~---------ddreAL~~a~rma~~---~~v~ltv~r~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~d  683 (792)
                      ||+|..=|..         -.+.|+++|...+..   ....|+++|+......... .........    ...+..++..
T Consensus         3 ki~vavd~s~~~~~~~~~~~S~~Al~wal~~~~~~~~~~~~L~~vhv~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~   81 (171)
T d2gm3a1           3 KVMVAVNASTIKDYPNPSISCKRAFEWTLEKIVRSNTSDFKILLLHVQVVDEDGFD-DVDSIYASPEDFRDMRQSNKAKG   81 (171)
T ss_dssp             EEEEECCBCSSSCTTCBCHHHHHHHHHHHHHTTTTCTTSEEEEEEEEEC-----------CCCCSHHHHHHHTTSHHHHH
T ss_pred             EEEEEEcCCcccCCCCCCHHHHHHHHHHHHHHHHCCCCCcEEEEEEeccccccccc-cccccccCHHHHHHHHHHHHHHH
Confidence            5666555542         469999999887754   3457999988653321100 000000000    0011122344


Q ss_pred             HHHHHHHHHhhcCCCcEEEEEEecCChHHHHHHHHhh--hcCccEEEEecCCCCCcccccCCcccCCCCccchhhhhhhc
Q 038269          684 DECFAEFYERQVAEGHVAYAEKHLANSSETFATLRSL--EGQYALIIVGRGERANSILTVGMNDWQQCPELGPIGDVLSG  761 (792)
Q Consensus       684 ~~~l~e~~~~~~~~~~v~y~e~~v~~~~e~~~~i~~~--~~~~dL~iVGr~~~~~s~~~~gl~~w~e~~eLG~iGd~las  761 (792)
                      ++.+++++...... .+.+.-.+ ..| +...+|.+.  ..++||+|+|+++..         .|.. -=+|-+-+.+..
T Consensus        82 ~~~l~~~~~~~~~~-~~~~~~~v-~~G-~~~~~I~~~a~~~~~dlIV~G~~g~~---------~~~~-~~lGSv~~~vi~  148 (171)
T d2gm3a1          82 LHLLEFFVNKCHEI-GVGCEAWI-KTG-DPKDVICQEVKRVRPDFLVVGSRGLG---------RFQK-VFVGTVSAFCVK  148 (171)
T ss_dssp             HHHHHHHHHHHHHH-TCEEEEEE-EES-CHHHHHHHHHHHHCCSEEEEEECCCC------------------CHHHHHHH
T ss_pred             HHHHHHHHHHHHhc-CCceEEEE-EeC-ChHHHHHHHHhhcCCcEEEeccCCcc---------cccc-CccCcHHHHHHh
Confidence            56666665433211 23333222 223 233333333  345899999987531         1111 126888888887


Q ss_pred             CCCCCceeEEEEeeeccCCCCCC
Q 038269          762 SDFLVRTSVLIIKQHDFKGELDG  784 (792)
Q Consensus       762 ~d~~~~~SvLvvqq~~~~~~~~~  784 (792)
                      .   +++.||||.--......|.
T Consensus       149 ~---~~cpVlvV~~~~~~~~~~~  168 (171)
T d2gm3a1         149 H---AECPVMTIKRNADETPSDP  168 (171)
T ss_dssp             H---CSSCEEEEECCGGGSCSST
T ss_pred             C---CCCCEEEEeCCCCCCCCCC
Confidence            5   6789999975544444333