Citrus Sinensis ID: 038271

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------16
Protein Sequence
MFLGVGCSEAKVGVNKPELLPREFTSVIDVAGFLSDGQERRLAQEIADLEKDTGFKLRVLAQNYPETPGLAIKDFWQVDDRTIVFVADPTFGNILNFNVGASVDLDIPRSFWSRLAGKYGNIFYWKEKGEDASIEAAVVAISNCLREPVGPNNCSEVK
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccEEEEcccccHHHHHHHHHHHHHHHHHHccEEEEEEEccccccHHHHHHHHcccccEEEEEEccccccEEEEEccccccccccHHHHHHHHHccccEEEEccccHHHHHHHHHHHHHHHHcccccccccEEcc
Secondary Structure Prediction (SSPRO)
cEEEEccccHHHHcccccHcccccccEEEHHHHccHHHHHHHHHHHHHHHHHcccEEEEEEccccccccHHHHHHccccccEEEEEEccccccEEEEcccHHHHHHccccHHHHHHHccccEEEEccccHHHHHHHHHHHHHHHHccccccccccccc
Coil and Loop (DISEMBL)
mflgvgcseakvgvnkpellpreftSVIDVAGFLSDGQERRLAQEIADLEKDTGFKLRVLAqnypetpglaikdfwqvddrtivfvadptfgnilnfnvgasvdldiprSFWSRLAgkygnifywkekgedaSIEAAVVAISNclrepvgpnncsevk
Flexible Loop (DISEMBL)
mflgvgcseakvgvnkpellpreFTSVIDVAGFLSDGQERRLAQEIADLEKDTGFKLRVLAQNYPETPGLAIKDFWQVDDRTIVFVADPTFGNILNFNVGASVDLDIPRSFWSRLAGKYGNIFYWKEKGEDASIEAAVVAISnclrepvgpnncsevk
Low Complexity Region (SEG)
MFLGVGCSEAKVGVNKPELLPREFTSVIDVAGFLSDGQERRLAQEIADLEKDTGFKLRVLAQNYPETPGLAIKDFWQVDDRTIVFVADPTFGNILNFNVGASVDLDIPRSFWSRLAGKYGNIFYWKEKGEDASIEAAVVAISNCLREPVGPNNCSEVK
Disordered region (IsUnstruct)
****VGCSEAKVGVNKPELLPREFTSVIDVAGFLSDGQERRLAQEIADLEKDTGFKLRVLAQNYPETPGLAIKDFWQVDDRTIVFVADPTFGNILNFNVGASVDLDIPRSFWSRLAGKYGNIFYWKEKGEDASIEAAVVAISNCLR************
Disordered Region (DISOPRED)
MF*****SEAKVGVNKPELLPREFTSVIDVAGFLSD**********ADLEKDTGFKLRVLAQNYPETPGLAIKDFWQVDDRTIVFVADPTFGNILNFNVGASVDLDIPRSFWSRLAGKYGNIFYWKEKGEDASIEAAVVAISNCLREPVGPNNCSEV*
Disordered Region (DISEMBL)
MFLGVGCSEAKVGVNKPELLPREFTSVIDVAGFLSDGQERRLAQEIADLEKDTGFKLRVLAQNYPETPGLAIKDFWQVDDRTIVFVADPTFGNILNFNVGASVDLDIPRSFWSRLAGKYGNIFYWKEKGEDASIEAAVVAISNCLREPVG********
Disordered Region (DISPRO)
MFLGVGCSEAKVGVNKPELLPREFTSVIDVAGFLSDGQERRLAQEIADLEKDTGFKLRVLAQNYPETPGLAIKDFWQVDDRTIVFVADPTFGNILNFNVGASVDLDIPRSFWSRLAGKYGNIFYWKEKGEDASIEAAVVAISNCLREP**********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MFLGVGCSEAKVGVNKPELLPREFTSVIDVAGFLSDGQERRLAQEIADLEKDTGFKLRVLAQNYPETPGLAIKDFWQVDDRTIVFVADPTFGNILNFNVGASVDLDIPRSFWSRLAGKYGNIFYWKEKGEDASIEAAVVAISNCLREPVGPNNCSEVK
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	158	2.2.26 [Sep-21-2011]
Q9LVV5	223	Thylakoid lumenal 15.0 kD	yes	no	0.981	0.695	0.877	8e-77

>sp|Q9LVV5|TL15B_ARATH Thylakoid lumenal 15.0 kDa protein 2, chloroplastic OS=Arabidopsis thaliana GN=At5g52970 PE=1 SV=2

 Score =  285 bits (729), Expect = 8e-77,   Method: Compositional matrix adjust.
 Identities = 136/155 (87%), Positives = 150/155 (96%)

Query: 4   GVGCSEAKVGVNKPELLPREFTSVIDVAGFLSDGQERRLAQEIADLEKDTGFKLRVLAQN 63
           GVG ++AKVGVNKPELLP+EFTSVIDVA FLS+GQE+R+AQEIA+LEKDTGFKLRVLAQN
Sbjct: 69  GVGFADAKVGVNKPELLPKEFTSVIDVADFLSNGQEKRIAQEIANLEKDTGFKLRVLAQN 128

Query: 64  YPETPGLAIKDFWQVDDRTIVFVADPTFGNILNFNVGASVDLDIPRSFWSRLAGKYGNIF 123
           YP TPGLAIKDFWQVDD TIVFVADPTFGNILNFNVGA+VDLDIPRSFWSRLAGKYGN+F
Sbjct: 129 YPVTPGLAIKDFWQVDDSTIVFVADPTFGNILNFNVGATVDLDIPRSFWSRLAGKYGNMF 188

Query: 124 YWKEKGEDASIEAAVVAISNCLREPVGPNNCSEVK 158
           YWKEKGEDASIEAAV+AIS+CLREPVG NNC+E++
Sbjct: 189 YWKEKGEDASIEAAVMAISSCLREPVGRNNCAEIQ 223

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	158
225440059	220	PREDICTED: thylakoid lumenal 15.0 kDa pr	0.993	0.713	0.917	5e-81
224138742	215	predicted protein [Populus trichocarpa]	1.0	0.734	0.886	4e-79
255556928	256	conserved hypothetical protein [Ricinus	0.974	0.601	0.909	8e-79
118489708	220	unknown [Populus trichocarpa x Populus d	0.981	0.704	0.896	1e-78
297792641	222	thylakoid lumen 15.0 kDa protein [Arabid	0.981	0.698	0.896	8e-78
449451038	228	PREDICTED: thylakoid lumenal 15.0 kDa pr	0.981	0.679	0.896	1e-77
449482437	228	PREDICTED: thylakoid lumenal 15.0 kDa pr	0.981	0.679	0.896	1e-77
226501892	224	permeases of the major facilitator super	0.974	0.687	0.896	2e-76
388514397	239	unknown [Lotus japonicus]	0.936	0.619	0.905	2e-76
358248548	229	uncharacterized protein LOC100795443 [Gl	0.987	0.681	0.878	8e-76

>gi|225440059|ref|XP_002282285.1| PREDICTED: thylakoid lumenal 15.0 kDa protein 2, chloroplastic [Vitis vinifera] gi|297741641|emb|CBI32773.3| unnamed protein product [Vitis vinifera]

 Score =  305 bits (780), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 144/157 (91%), Positives = 154/157 (98%)

Query: 2   FLGVGCSEAKVGVNKPELLPREFTSVIDVAGFLSDGQERRLAQEIADLEKDTGFKLRVLA 61
           F GV C+EAKVGVNKP+LLP+EF+SVIDVAGFLSDGQE+RLAQEI ++EKDTGFKLRVLA
Sbjct: 64  FTGVECAEAKVGVNKPDLLPKEFSSVIDVAGFLSDGQEKRLAQEITNIEKDTGFKLRVLA 123

Query: 62  QNYPETPGLAIKDFWQVDDRTIVFVADPTFGNILNFNVGASVDLDIPRSFWSRLAGKYGN 121
           QNYP+TPGLAIK+FWQVDDRTIVFVADPTFGNILNFNVGASVDLDIPRSFWSRLAGKYGN
Sbjct: 124 QNYPDTPGLAIKEFWQVDDRTIVFVADPTFGNILNFNVGASVDLDIPRSFWSRLAGKYGN 183

Query: 122 IFYWKEKGEDASIEAAVVAISNCLREPVGPNNCSEVK 158
           IFYWKEKGEDASIEAAV+AISNCLREPVGPNNCSEVK
Sbjct: 184 IFYWKEKGEDASIEAAVMAISNCLREPVGPNNCSEVK 220

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224138742|ref|XP_002322890.1| predicted protein [Populus trichocarpa] gi|222867520|gb|EEF04651.1| predicted protein [Populus trichocarpa]

 Score =  298 bits (764), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 140/158 (88%), Positives = 155/158 (98%)

Query: 1   MFLGVGCSEAKVGVNKPELLPREFTSVIDVAGFLSDGQERRLAQEIADLEKDTGFKLRVL 60
           + LGVG ++AKVGVNKPELLP+EFT+VIDVAGFLSDGQE+RLA+EI+D+EKDTGFKLRVL
Sbjct: 58  LALGVGVADAKVGVNKPELLPKEFTTVIDVAGFLSDGQEKRLAEEISDIEKDTGFKLRVL 117

Query: 61  AQNYPETPGLAIKDFWQVDDRTIVFVADPTFGNILNFNVGASVDLDIPRSFWSRLAGKYG 120
           AQNYP+TPGLAI+DFWQVDDRT+VFVADP FGNILNFNVGASVDLDIPRSFWSRLAGKYG
Sbjct: 118 AQNYPDTPGLAIRDFWQVDDRTVVFVADPNFGNILNFNVGASVDLDIPRSFWSRLAGKYG 177

Query: 121 NIFYWKEKGEDASIEAAVVAISNCLREPVGPNNCSEVK 158
           N+FYWKEKGEDASIEAAV+AIS+CLREPVGPNNCSEVK
Sbjct: 178 NMFYWKEKGEDASIEAAVMAISSCLREPVGPNNCSEVK 215

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255556928|ref|XP_002519497.1| conserved hypothetical protein [Ricinus communis] gi|223541360|gb|EEF42911.1| conserved hypothetical protein [Ricinus communis]

 Score =  297 bits (761), Expect = 8e-79,   Method: Compositional matrix adjust.
 Identities = 140/154 (90%), Positives = 151/154 (98%)

Query: 4   GVGCSEAKVGVNKPELLPREFTSVIDVAGFLSDGQERRLAQEIADLEKDTGFKLRVLAQN 63
           GV  +EAKVGVNKPELLP+EFT+VIDVAGFLSDGQE+RLAQEI D+EKDTGFKLRVLAQN
Sbjct: 68  GVEFAEAKVGVNKPELLPKEFTTVIDVAGFLSDGQEKRLAQEIQDIEKDTGFKLRVLAQN 127

Query: 64  YPETPGLAIKDFWQVDDRTIVFVADPTFGNILNFNVGASVDLDIPRSFWSRLAGKYGNIF 123
           YP+TPGLAIKDFW+VDDRTIVFVADPTFGNILNFNVGAS+DLDIPRSFWSRLAGKYGNIF
Sbjct: 128 YPDTPGLAIKDFWRVDDRTIVFVADPTFGNILNFNVGASIDLDIPRSFWSRLAGKYGNIF 187

Query: 124 YWKEKGEDASIEAAVVAISNCLREPVGPNNCSEV 157
           YWKEKGEDASIE+AV+AISNCLREPVGPNNCSE+
Sbjct: 188 YWKEKGEDASIESAVMAISNCLREPVGPNNCSEL 221

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118489708|gb|ABK96655.1| unknown [Populus trichocarpa x Populus deltoides]

 Score =  297 bits (760), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 139/155 (89%), Positives = 153/155 (98%)

Query: 4   GVGCSEAKVGVNKPELLPREFTSVIDVAGFLSDGQERRLAQEIADLEKDTGFKLRVLAQN 63
           GVG ++AKVGVNKPELLP+EFT+VIDVAGFLSDGQE+RLA+EI+D+EKDTGFKLRVLAQN
Sbjct: 66  GVGVADAKVGVNKPELLPKEFTTVIDVAGFLSDGQEKRLAEEISDIEKDTGFKLRVLAQN 125

Query: 64  YPETPGLAIKDFWQVDDRTIVFVADPTFGNILNFNVGASVDLDIPRSFWSRLAGKYGNIF 123
           YP+TPGLAI+DFWQVDDRT+VFVADP FGNILNFNVGASVDLDIPRSFWSRLAGKYGN+F
Sbjct: 126 YPDTPGLAIRDFWQVDDRTVVFVADPNFGNILNFNVGASVDLDIPRSFWSRLAGKYGNMF 185

Query: 124 YWKEKGEDASIEAAVVAISNCLREPVGPNNCSEVK 158
           YWKEKGEDASIEAAV+AIS+CLREPVGPNNCSEVK
Sbjct: 186 YWKEKGEDASIEAAVMAISSCLREPVGPNNCSEVK 220

Source: Populus trichocarpa x Populus deltoides

Species: Populus trichocarpa x Populus deltoides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297792641|ref|XP_002864205.1| thylakoid lumen 15.0 kDa protein [Arabidopsis lyrata subsp. lyrata] gi|297310040|gb|EFH40464.1| thylakoid lumen 15.0 kDa protein [Arabidopsis lyrata subsp. lyrata]

 Score =  294 bits (753), Expect = 8e-78,   Method: Compositional matrix adjust.
 Identities = 139/155 (89%), Positives = 152/155 (98%)

Query: 4   GVGCSEAKVGVNKPELLPREFTSVIDVAGFLSDGQERRLAQEIADLEKDTGFKLRVLAQN 63
           GVG +EAKVGVNKPELLP+EFTSVIDVAGFLS+GQE+R+AQEIA+LEKDTGFKLRVLAQN
Sbjct: 68  GVGFAEAKVGVNKPELLPKEFTSVIDVAGFLSNGQEKRIAQEIANLEKDTGFKLRVLAQN 127

Query: 64  YPETPGLAIKDFWQVDDRTIVFVADPTFGNILNFNVGASVDLDIPRSFWSRLAGKYGNIF 123
           YP TPGLAIKDFWQVDD TIVFVADPTFGNILNFNVGA+VDLDIPRSFWSRLAGKYGN+F
Sbjct: 128 YPVTPGLAIKDFWQVDDSTIVFVADPTFGNILNFNVGATVDLDIPRSFWSRLAGKYGNMF 187

Query: 124 YWKEKGEDASIEAAVVAISNCLREPVGPNNCSEVK 158
           YWKEKGEDASIEAAV+AIS+CLREPVGPNNC+E++
Sbjct: 188 YWKEKGEDASIEAAVMAISSCLREPVGPNNCAEIQ 222

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449451038|ref|XP_004143269.1| PREDICTED: thylakoid lumenal 15.0 kDa protein 2, chloroplastic-like [Cucumis sativus]

 Score =  293 bits (751), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 139/155 (89%), Positives = 150/155 (96%)

Query: 4   GVGCSEAKVGVNKPELLPREFTSVIDVAGFLSDGQERRLAQEIADLEKDTGFKLRVLAQN 63
           GVG ++AKVGVNKPELLP+EFTSVIDVAGFLSDGQE RL QEIAD+EKDTG+KLRVLAQN
Sbjct: 74  GVGFADAKVGVNKPELLPKEFTSVIDVAGFLSDGQEIRLKQEIADIEKDTGYKLRVLAQN 133

Query: 64  YPETPGLAIKDFWQVDDRTIVFVADPTFGNILNFNVGASVDLDIPRSFWSRLAGKYGNIF 123
           YP TPGLAIKDFWQVDDRTIVFVADPTFGNILNFNVGA+VDLDIPRSFWSRLAGKYGNIF
Sbjct: 134 YPVTPGLAIKDFWQVDDRTIVFVADPTFGNILNFNVGATVDLDIPRSFWSRLAGKYGNIF 193

Query: 124 YWKEKGEDASIEAAVVAISNCLREPVGPNNCSEVK 158
           YWKEKGED+SIE+AV+AIS+CLREPVG NNCSE+K
Sbjct: 194 YWKEKGEDSSIESAVMAISSCLREPVGANNCSEIK 228

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449482437|ref|XP_004156281.1| PREDICTED: thylakoid lumenal 15.0 kDa protein 2, chloroplastic-like [Cucumis sativus]

 Score =  293 bits (750), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 139/155 (89%), Positives = 150/155 (96%)

Query: 4   GVGCSEAKVGVNKPELLPREFTSVIDVAGFLSDGQERRLAQEIADLEKDTGFKLRVLAQN 63
           GVG ++AKVGVNKPELLP+EFTSVIDVAGFLSDGQE RL QEIAD+EKDTG+KLRVLAQN
Sbjct: 74  GVGFADAKVGVNKPELLPKEFTSVIDVAGFLSDGQEIRLKQEIADIEKDTGYKLRVLAQN 133

Query: 64  YPETPGLAIKDFWQVDDRTIVFVADPTFGNILNFNVGASVDLDIPRSFWSRLAGKYGNIF 123
           YP TPGLAIKDFWQVDDRTIVFVADPTFGNILNFNVGA+VDLDIPRSFWSRLAGKYGNIF
Sbjct: 134 YPVTPGLAIKDFWQVDDRTIVFVADPTFGNILNFNVGATVDLDIPRSFWSRLAGKYGNIF 193

Query: 124 YWKEKGEDASIEAAVVAISNCLREPVGPNNCSEVK 158
           YWKEKGED+SIE+AV+AIS+CLREPVG NNCSE+K
Sbjct: 194 YWKEKGEDSSIESAVMAISSCLREPVGANNCSEIK 228

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|226501892|ref|NP_001147270.1| permeases of the major facilitator superfamily [Zea mays] gi|195609322|gb|ACG26491.1| permeases of the major facilitator superfamily [Zea mays]

 Score =  290 bits (741), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 139/155 (89%), Positives = 150/155 (96%), Gaps = 1/155 (0%)

Query: 4   GVGCSEA-KVGVNKPELLPREFTSVIDVAGFLSDGQERRLAQEIADLEKDTGFKLRVLAQ 62
           GVG +EA KVGVNKPELLP+EFTSVIDVAGFLSDGQE+R+A+EI+DLEKDTGFKLRVLAQ
Sbjct: 69  GVGIAEAAKVGVNKPELLPKEFTSVIDVAGFLSDGQEKRIAEEISDLEKDTGFKLRVLAQ 128

Query: 63  NYPETPGLAIKDFWQVDDRTIVFVADPTFGNILNFNVGASVDLDIPRSFWSRLAGKYGNI 122
           NYP TPGLAIKD+WQVDD TIVFVADPTFGNILNFNVGASVDLDIPRSFWSRLAGKYGN+
Sbjct: 129 NYPVTPGLAIKDYWQVDDSTIVFVADPTFGNILNFNVGASVDLDIPRSFWSRLAGKYGNM 188

Query: 123 FYWKEKGEDASIEAAVVAISNCLREPVGPNNCSEV 157
           FYWKEKGEDASIEAAV+AIS+CLREPVG NNC+EV
Sbjct: 189 FYWKEKGEDASIEAAVMAISSCLREPVGANNCAEV 223

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388514397|gb|AFK45260.1| unknown [Lotus japonicus]

 Score =  289 bits (740), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 134/148 (90%), Positives = 146/148 (98%)

Query: 10  AKVGVNKPELLPREFTSVIDVAGFLSDGQERRLAQEIADLEKDTGFKLRVLAQNYPETPG 69
           AKVGVNKPELLP+EF++VIDVAGFLSDGQE+RLAQEIA +EKDTGFKLRVLAQNYP+TPG
Sbjct: 91  AKVGVNKPELLPKEFSTVIDVAGFLSDGQEKRLAQEIAAIEKDTGFKLRVLAQNYPDTPG 150

Query: 70  LAIKDFWQVDDRTIVFVADPTFGNILNFNVGASVDLDIPRSFWSRLAGKYGNIFYWKEKG 129
           LA+KDFWQVDDRTIVFVADPTFGNILNFNVGASVDLDIPRSFW RLAGKYGNIFYW++KG
Sbjct: 151 LAVKDFWQVDDRTIVFVADPTFGNILNFNVGASVDLDIPRSFWGRLAGKYGNIFYWRDKG 210

Query: 130 EDASIEAAVVAISNCLREPVGPNNCSEV 157
           EDAS+EAAV+AIS+CLREPVGPNNCSEV
Sbjct: 211 EDASVEAAVMAISSCLREPVGPNNCSEV 238

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358248548|ref|NP_001239900.1| uncharacterized protein LOC100795443 [Glycine max] gi|255639397|gb|ACU19994.1| unknown [Glycine max]

 Score =  288 bits (736), Expect = 8e-76,   Method: Compositional matrix adjust.
 Identities = 138/157 (87%), Positives = 151/157 (96%), Gaps = 1/157 (0%)

Query: 2   FLGVGCSEA-KVGVNKPELLPREFTSVIDVAGFLSDGQERRLAQEIADLEKDTGFKLRVL 60
           F G+G +EA KVGVNKPELLP+EF++VIDVAGFLSDGQE+RLA+EIA LE DTGFKLRVL
Sbjct: 72  FGGIGVAEAAKVGVNKPELLPKEFSTVIDVAGFLSDGQEKRLAEEIAALEADTGFKLRVL 131

Query: 61  AQNYPETPGLAIKDFWQVDDRTIVFVADPTFGNILNFNVGASVDLDIPRSFWSRLAGKYG 120
           AQNYP TPGLAIKDFWQVDDRT+VFVADPTFGNILNFNVGA+VDLD+PRSFW+RLAGKYG
Sbjct: 132 AQNYPVTPGLAIKDFWQVDDRTVVFVADPTFGNILNFNVGATVDLDVPRSFWNRLAGKYG 191

Query: 121 NIFYWKEKGEDASIEAAVVAISNCLREPVGPNNCSEV 157
           NIFYWKEKGEDASIEAAV+AIS+CLREPVGPNNCSEV
Sbjct: 192 NIFYWKEKGEDASIEAAVMAISSCLREPVGPNNCSEV 228

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	158
TAIR|locus:2168362	223	AT5G52970 "AT5G52970" [Arabido	0.981	0.695	0.877	1.1e-71

TAIR|locus:2168362 AT5G52970 "AT5G52970" [Arabidopsis thaliana (taxid:3702)]

 Score = 725 (260.3 bits), Expect = 1.1e-71, P = 1.1e-71
 Identities = 136/155 (87%), Positives = 150/155 (96%)

Query:     4 GVGCSEAKVGVNKPELLPREFTSVIDVAGFLSDGQERRLAQEIADLEKDTGFKLRVLAQN 63
             GVG ++AKVGVNKPELLP+EFTSVIDVA FLS+GQE+R+AQEIA+LEKDTGFKLRVLAQN
Sbjct:    69 GVGFADAKVGVNKPELLPKEFTSVIDVADFLSNGQEKRIAQEIANLEKDTGFKLRVLAQN 128

Query:    64 YPETPGLAIKDFWQVDDRTIVFVADPTFGNILNFNVGASVDLDIPRSFWSRLAGKYGNIF 123
             YP TPGLAIKDFWQVDD TIVFVADPTFGNILNFNVGA+VDLDIPRSFWSRLAGKYGN+F
Sbjct:   129 YPVTPGLAIKDFWQVDDSTIVFVADPTFGNILNFNVGATVDLDIPRSFWSRLAGKYGNMF 188

Query:   124 YWKEKGEDASIEAAVVAISNCLREPVGPNNCSEVK 158
             YWKEKGEDASIEAAV+AIS+CLREPVG NNC+E++
Sbjct:   189 YWKEKGEDASIEAAVMAISSCLREPVGRNNCAEIQ 223


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.138   0.419    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      158       158   0.00085  106 3  11 22  0.37    32
                                                     30  0.43    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  579 (62 KB)
  Total size of DFA:  151 KB (2091 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  14.06u 0.15s 14.21t   Elapsed:  00:00:01
  Total cpu time:  14.06u 0.15s 14.21t   Elapsed:  00:00:01
  Start:  Fri May 10 23:40:13 2013   End:  Fri May 10 23:40:14 2013

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009543 "chloroplast thylakoid lumen" evidence=IDA

GO:0031977 "thylakoid lumen" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0006364 "rRNA processing" evidence=RCA

GO:0009793 "embryo development ending in seed dormancy" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA

GO:0015995 "chlorophyll biosynthetic process" evidence=RCA

GO:0016226 "iron-sulfur cluster assembly" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0048481 "ovule development" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LVV5	TL15B_ARATH	No assigned EC number	0.8774	0.9810	0.6950	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00023239001	SubName- Full=Chromosome chr8 scaffold_29, whole genome shotgun sequence; (219 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00029202001	SubName- Full=Chromosome chr12 scaffold_47, whole genome shotgun sequence; (297 aa)			•	•					0.700
	GSVIVG00028499001	RecName- Full=Photosystem II reaction center psb28 protein; (179 aa)			•	•					0.689
	GSVIVG00037015001	SubName- Full=Chromosome chr1 scaffold_84, whole genome shotgun sequence; (198 aa)			•	•					0.678
	GSVIVG00023910001	SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (216 aa)			•	•					0.674
	GSVIVG00025097001	SubName- Full=Putative uncharacterized protein (Chromosome chr4 scaffold_32, whole genome shotg [...] (221 aa)			•	•					0.661
	PsbP2	SubName- Full=Chromosome chr13 scaffold_17, whole genome shotgun sequence; (238 aa)			•	•					0.659
	GSVIVG00037960001	SubName- Full=Chromosome chr14 scaffold_9, whole genome shotgun sequence; (267 aa)			•	•					0.656
	GSVIVG00028771001	SubName- Full=Chromosome chr13 scaffold_45, whole genome shotgun sequence; (378 aa)			•	•					0.637
	GSVIVG00035532001	SubName- Full=Chromosome undetermined scaffold_79, whole genome shotgun sequence; (221 aa)			•	•					0.636
	GSVIVG00018549001	SubName- Full=Chromosome chr13 scaffold_17, whole genome shotgun sequence; (235 aa)			•	•					0.634

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	158
pfam04536	120	pfam04536, Repair_PSII, Repair protein	5e-18
COG1512	271	COG1512, COG1512, Beta-propeller domains of methan	7e-04

>gnl|CDD|203039 pfam04536, Repair_PSII, Repair protein

 Score = 74.5 bits (184), Expect = 5e-18
 Identities = 29/122 (23%), Positives = 48/122 (39%), Gaps = 11/122 (9%)

Query: 33  FLSDGQERRLAQEIADLEKDTGFKLRVLAQN--YPETPGLAIKDFWQV-------DDRTI 83
            LS  +  RL Q +A LE+ TG ++ V+       E       D +         DD  +
Sbjct: 1   LLSAAERARLEQALAALEQKTGGEIVVVTVPSLDGEDIEDYALDLFDAWGLGDTEDDNGV 60

Query: 84  VFVADPTFGNILNFNVGASVDLDIPRSFWSRLAGKYGNIFYWKEKGEDASIEAAVVAISN 143
           + +        +   VG  ++  +P +FW  +      + Y++E      I AAV AI  
Sbjct: 61  LLLVAL-NDRKVRIEVGYGLEGRLPDAFWDEIIDDLI-VPYFREGDYAEGIVAAVDAIGA 118

Query: 144 CL 145
            L
Sbjct: 119 VL 120

In plants, this domain plays a role in the photosystem II (PSII) repair cycle. It may be involved in the regulation of synthesis/degradation of the D1 protein of the PSII core and in the assembly of PSII monomers into dimers in the grana stacks. Its function in other organisms is unknown. Length = 120

>gnl|CDD|224429 COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]

 Score = 38.5 bits (90), Expect = 7e-04
 Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 14/79 (17%)

Query: 21  PREFTSVIDVAGFLSDGQERRLAQEIADLEKDTGFKLRVLAQNYPETPGLAIKDF----- 75
           P     V D+ G LS  +   L Q++ADLE+ TG ++ V+    P T G  I+ +     
Sbjct: 30  PTLSQRVTDLTGTLSAAERGALEQQLADLEQKTGAQIAVVT--VPSTGGETIEQYATRLF 87

Query: 76  --W-----QVDDRTIVFVA 87
             W       DD  ++ VA
Sbjct: 88  DKWKLGDKAQDDGVLLLVA 106

Length = 271

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	158
COG1512	271	Beta-propeller domains of methanol dehydrogenase t	100.0
PF04536	119	TPM: TLP18.3, Psb32 and MOLO-1 founding proteins o	99.84
COG3762	213	Predicted membrane protein [Function unknown]	86.37
TIGR02500	410	type_III_yscD type III secretion apparatus protein	85.23

>COG1512 Beta-propeller domains of methanol dehydrogenase type [General function prediction only]

Probab=100.00  E-value=1.4e-34  Score=245.96  Aligned_cols=138  Identities=23%  Similarity=0.318  Sum_probs=128.5

Q ss_pred             hccccccCCCCCCCCCCceeecCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEeeecCCCcch-------hhhhhhcCC--
Q 038271            9 EAKVGVNKPELLPREFTSVIDVAGFLSDGQERRLAQEIADLEKDTGFKLRVLAQNYPETPGL-------AIKDFWQVD--   79 (158)
Q Consensus         9 ~a~~~~~~P~l~P~l~~~VvD~A~~Ls~~~~~~L~~~L~~lE~~TG~qv~Vlt~~~p~t~~~-------~v~~~W~~~--   79 (158)
                      .+..++.-|.+.|.++.||+|+|++||.+++++||++|++||++|+.||+|||  +|+|.|.       ++||+||+|  
T Consensus        18 ~~~~~~a~~~~~p~~~~~V~D~t~~Ls~~e~~~Leq~l~~L~~kt~~QiaVv~--vpSt~g~~IE~ya~rlfd~W~lG~k   95 (271)
T COG1512          18 LAPLLFAEPIPAPTLSQRVTDLTGTLSAAERGALEQQLADLEQKTGAQIAVVT--VPSTGGETIEQYATRLFDKWKLGDK   95 (271)
T ss_pred             HHHhhhccccCCCcccceeeeccccCChhhHHHHHHHHHHHHhccCCeEEEEE--ecCCCCCCHHHHHHHHHHhcCCCcc
Confidence            33457888999999999999999999999999999999999999999999999  9999874       889999966  


Q ss_pred             ---CCeEEEEE-cCCCCceeEEeeccccccCCCHHHHHHHhhccCCcceecccChhHHHHHHHHHHHHHhcCCCCCC
Q 038271           80 ---DRTIVFVA-DPTFGNILNFNVGASVDLDIPRSFWSRLAGKYGNIFYWKEKGEDASIEAAVVAISNCLREPVGPN  152 (158)
Q Consensus        80 ---dg~lLlVa-d~r~~n~l~i~vG~gleg~Lpd~~a~~I~~r~gn~~~fr~~~~~~gi~aav~ai~~~L~ge~~~~  152 (158)
                         ||+||||| |+|   ++|||||||||+.+||+.+.+|++..+. |+||+|+|++||.+++++|.+.+.|||.+.
T Consensus        96 ~~~dGvLLlVa~~dr---~~rIevGyGLEg~ltD~~a~~iIr~~i~-P~fr~gny~~gi~~~id~l~~~l~g~~~~~  168 (271)
T COG1512          96 AQDDGVLLLVAMNDR---RVRIEVGYGLEGVLTDAQAGRIIRETIA-PAFRDGNYAGGLEAGIDRLVALLAGEPLPS  168 (271)
T ss_pred             ccCCCEEEEEEcCCC---eEEEEEecCcccccChHHHHHHHHhhhC-cccccCcHHHHHHHHHHHHHHHHcCCCCCC
Confidence               88999999 887   4899999999999999999999999995 799999999999999999999999999664

>PF04536 TPM: TLP18

Probab=99.84  E-value=2e-20  Score=136.33  Aligned_cols=106  Identities=28%  Similarity=0.493  Sum_probs=88.5

Q ss_pred             CCCHHHHHHHHHHHHHHHHhcCCeEEEEeeecCCCcch-------hhhhhhcCC-----CCeEEEEE-cCCCCceeEEee
Q 038271           33 FLSDGQERRLAQEIADLEKDTGFKLRVLAQNYPETPGL-------AIKDFWQVD-----DRTIVFVA-DPTFGNILNFNV   99 (158)
Q Consensus        33 ~Ls~~~~~~L~~~L~~lE~~TG~qv~Vlt~~~p~t~~~-------~v~~~W~~~-----dg~lLlVa-d~r~~n~l~i~v   99 (158)
                      +||++++++|++.|+++|++||.||+|+|  ++++++.       ++++.|+++     +|+||+|+ ++|   .++|.+
T Consensus         1 iLs~~~~~~l~~~l~~~~~~t~~~i~Vvt--v~~~~~~~~~~~A~~~~~~~~~g~~~~~~gvlilv~~~~r---~~~i~~   75 (119)
T PF04536_consen    1 ILSQEERERLNQALAKLEKKTGVQIVVVT--VPSLPGQDIEDYAQQLFERWGLGDGECNNGVLILVSKDDR---KVRIET   75 (119)
T ss_dssp             -S-HHHHHHHHHHHHHHHHHC--EEEEEE--ESB-TTS-HHHHHHHHHHHHSTTCCCTSSEEEEEEETTTT---EEEEEE
T ss_pred             CCCHHHHHHHHHHHHHHHHhhCCEEEEEE--EcCCCCCCHHHHHHHHHHHhCCCCccccCcEEEEEEcCCC---EEEEEE
Confidence            58999999999999999999999999999  8888663       778899965     66677776 766   479999


Q ss_pred             ccccccCCCHHHHHHHhhccCCcceecccChhHHHHHHHHHHHHHh
Q 038271          100 GASVDLDIPRSFWSRLAGKYGNIFYWKEKGEDASIEAAVVAISNCL  145 (158)
Q Consensus       100 G~gleg~Lpd~~a~~I~~r~gn~~~fr~~~~~~gi~aav~ai~~~L  145 (158)
                      |++++..+||..+.+|...+  .|+||+++|++|+..++++|..+|
T Consensus        76 g~~~~~~l~~~~~~~i~~~~--~~~~~~~~~~~g~~~~v~~i~~~L  119 (119)
T PF04536_consen   76 GGGLEERLTDSECESIIDEM--VPYFKDGDYAEGIEAAVDAIAEVL  119 (119)
T ss_dssp             -CTCCCCH-HHHHHHHHHHH--HHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred             CCchhhcCCHHHHHHHHHHH--HHHHHcCCHHHHHHHHHHHHHhhC
Confidence            99999999999999999999  589999999999999999999886

3, Psb32 and MOLO-1 founding proteins of phosphatase; InterPro: IPR007621 This is a family of uncharacterised proteins. They are found in both eukarya and eubacteria. In eubacteria the region is towards the N-terminal of the protein and is accompanied by an N-terminal signal sequence. The C-terminal of eubacterial proteins typically contains one or more putative transmembrane regions. In eukaryotes the region is not accompanied by a signal sequence.; PDB: 3PTJ_A 3PW9_A 3PVH_A 2KPT_A 2KW7_A.

>COG3762 Predicted membrane protein [Function unknown]

Probab=86.37  E-value=0.32  Score=40.82  Aligned_cols=63  Identities=10%  Similarity=0.222  Sum_probs=53.8

Q ss_pred             CCeEEEEE-cCCCCceeEEeeccccccCCCHHHHHHHhhccCCcceecccChhHHHHHHHHHHHHHhcC
Q 038271           80 DRTIVFVA-DPTFGNILNFNVGASVDLDIPRSFWSRLAGKYGNIFYWKEKGEDASIEAAVVAISNCLRE  147 (158)
Q Consensus        80 dg~lLlVa-d~r~~n~l~i~vG~gleg~Lpd~~a~~I~~r~gn~~~fr~~~~~~gi~aav~ai~~~L~g  147 (158)
                      .|+|+.|+ -++.   ..+--..|+....|+.+|.+|-+.-..  .||++.+.+||..|++++.++|+-
T Consensus       130 tGVLIfvs~aeh~---veViAD~GI~a~V~~~~W~~ic~~lta--g~~~~~~adgfveAi~qig~vLA~  193 (213)
T COG3762         130 TGVLIFVSLAEHR---VEVIADQGIHAYVGQAEWNAICDTLTA--GFRQGAAADGFVEAIGQIGKVLAA  193 (213)
T ss_pred             ceeEEeeHHHHHH---HHHHhcccHHhhccHHHHHHHHHHHHH--HHhccchhhHHHHHHHHHHHHHHH
Confidence            89999998 6652   344556999999999999999998753  789999999999999999999964

>TIGR02500 type_III_yscD type III secretion apparatus protein, YscD/HrpQ family

Probab=85.23  E-value=2.9  Score=37.49  Aligned_cols=76  Identities=24%  Similarity=0.325  Sum_probs=55.2

Q ss_pred             CceeecCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEeeecCCCcc------hhhhhhhcCCCCeEEEEEcCCCCceeEEe
Q 038271           25 TSVIDVAGFLSDGQERRLAQEIADLEKDTGFKLRVLAQNYPETPG------LAIKDFWQVDDRTIVFVADPTFGNILNFN   98 (158)
Q Consensus        25 ~~VvD~A~~Ls~~~~~~L~~~L~~lE~~TG~qv~Vlt~~~p~t~~------~~v~~~W~~~dg~lLlVad~r~~n~l~i~   98 (158)
                      ..-+-.+|.|++++.+++.+.+++|.++.|.-..+..|+.|.+.+      ..|..+++.+....++++|-+     |+-
T Consensus       304 ~~~i~lsG~l~~~~~~~~~~~l~~f~~~~~~~~~~~~~~~~~~~~~~~~lP~~i~~~~~~g~~~yvvl~dG~-----Rl~  378 (410)
T TIGR02500       304 GREIALSGQLDSEKRSRLQELLAAFKQRDGVIPDVVLQNIPAADGTSDELPFPVVSISGSGPNPYVVLADGQ-----RLF  378 (410)
T ss_pred             CCEEEEEecCCHHHHHHHHHHHHHHHHhCCCCceEEEecCCccccccccCCcceEEEecCCCCCEEEEeCCc-----Eec
Confidence            345667899999999999999999999999633233333664432      366777877777788777776     567


Q ss_pred             ecccccc
Q 038271           99 VGASVDL  105 (158)
Q Consensus        99 vG~gleg  105 (158)
                      +|.-|.+
T Consensus       379 ~G~~l~~  385 (410)
T TIGR02500       379 VGARLPG  385 (410)
T ss_pred             cCCCCCC
Confidence            7766655

This family represents a conserved protein of bacterial type III secretion systems. Gene symbols are variable from species to species. Members are designated YscD in Yersinia, HrpQ in Pseudomonas syringae, and EscD in enteropathogenic Escherichia coli. In the Chlamydiae, this model describes the C-terminal 400 residues of a longer protein.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	158
1qzv_F	154	Plant photosystem I: subunit PSAF; photosynthesis,	1e-05
2kpt_A	148	Putative secreted protein; methods development, al	2e-05
2kw7_A	157	Conserved domain protein; structural genomics, nor	4e-05
3pvh_A	153	UPF0603 protein AT1G54780, chloroplastic; TAP doma	6e-04

>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154

 Score = 42.2 bits (98), Expect = 1e-05
 Identities = 11/37 (29%), Positives = 16/37 (43%), Gaps = 13/37 (35%)

Query: 39 ERRLAQEIADLEKDTGFKLRVLAQNY-PET-PGLAIK 73
          E+   Q +  L+     KL      Y  ++ P LAIK
Sbjct: 18 EK---QALKKLQ--ASLKL------YADDSAPALAIK 43

>2kpt_A Putative secreted protein; methods development, alpha/beta, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} Length = 148

 Score = 41.4 bits (97), Expect = 2e-05
 Identities = 10/68 (14%), Positives = 21/68 (30%), Gaps = 9/68 (13%)

Query: 27 VIDVAGFLSDGQERRLAQEIADLEKDTGFKLRVLAQNYPETPGLAIKDF-------WQVD 79
          V D  G +S      +   I D++      + V+        G+  + +           
Sbjct: 17 VTDYTGQISSSDITNIQAAIDDVKASEQKVIFVVFL--SSFDGVDPETWTQQALQANGGG 74

Query: 80 DRTIVFVA 87
          +  I  +A
Sbjct: 75 NVLIYALA 82

>2kw7_A Conserved domain protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Porphyromonas gingivalis} Length = 157

 Score = 40.6 bits (95), Expect = 4e-05
 Identities = 13/56 (23%), Positives = 21/56 (37%), Gaps = 2/56 (3%)

Query: 20 LPREFTSVIDVAGFLSDGQERRLAQEIADLEKDTGFKLRVLAQNYPETPGLAIKDF 75
          L      V D AG LS+ QE  +   +  +      +  V+    P      ++DF
Sbjct: 14 LADSTRLVTDEAGLLSNAQEEVMNGRLRAIRSSHAVEFAVVTL--PSIGDAPLEDF 67

>3pvh_A UPF0603 protein AT1G54780, chloroplastic; TAP domain, rossman fold, acid phosphatase, arabidopsis THAL thylakoid lumen, hydrolase; 1.60A {Arabidopsis thaliana} PDB: 3pw9_A 3ptj_A Length = 153

 Score = 37.1 bits (86), Expect = 6e-04
 Identities = 15/61 (24%), Positives = 25/61 (40%), Gaps = 1/61 (1%)

Query: 15 NKPELLPREFTSVIDVAGFLSDGQERRLAQEIADLEKDTGFKLRVLAQNYPETPGLAIKD 74
          N     P + T V+D AG LS   +  L + ++DLE     +L  +      T      +
Sbjct: 6  NILNDGPPKETYVVDDAGVLSRVTKSDLKKLLSDLEYRKKLRLNFITVR-KLTSKADAFE 64

Query: 75 F 75
          +
Sbjct: 65 Y 65

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	158
2kw7_A	157	Conserved domain protein; structural genomics, nor	99.96
2kpt_A	148	Putative secreted protein; methods development, al	99.96
3pvh_A	153	UPF0603 protein AT1G54780, chloroplastic; TAP doma	99.94

>2kw7_A Conserved domain protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Porphyromonas gingivalis}

Probab=99.96  E-value=1e-29  Score=196.42  Aligned_cols=132  Identities=17%  Similarity=0.290  Sum_probs=117.3

Q ss_pred             cccCCCCCCC-CCCceeecCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEeeecCCCcch-------hhhhhhcCC-----
Q 038271           13 GVNKPELLPR-EFTSVIDVAGFLSDGQERRLAQEIADLEKDTGFKLRVLAQNYPETPGL-------AIKDFWQVD-----   79 (158)
Q Consensus        13 ~~~~P~l~P~-l~~~VvD~A~~Ls~~~~~~L~~~L~~lE~~TG~qv~Vlt~~~p~t~~~-------~v~~~W~~~-----   79 (158)
                      ++++|++-++ .+++|+|.|++||++++++|++.|+++|++||.||+|+|  ++++.+.       ++|++|+++     
T Consensus         6 ~~~~p~~~~~~~~~~V~D~a~~Ls~~~~~~L~~~l~~~e~~t~~qi~Vv~--v~~l~g~~~~~~A~~~f~~wgig~~~~~   83 (157)
T 2kw7_A            6 PEDVPNVQLADSTRLVTDEAGLLSNAQEEVMNGRLRAIRSSHAVEFAVVT--LPSIGDAPLEDFTLKLARQWGVGNEKNN   83 (157)
T ss_dssp             GGGSCCGGGTCTTTCEEECSSCSCHHHHHHHHHHHHHHHHHTCCEEEEEE--ESBCTTCCHHHHHHHHHHHHSTTTTSCT
T ss_pred             HhhCCCCCCCCCCceEEcccccCCHHHHHHHHHHHHHHHHhhCCeEEEEE--EcCCCCCCHHHHHHHHHHHhCCCCCCCC
Confidence            5677754332 367999999999999999999999999999999999999  8888653       789999976     


Q ss_pred             CCeEEEEE-cCCCCceeEEeeccccccCCCHHHHHHHhhccCCcceecccChhHHHHHHHHHHHHHhcCCCC
Q 038271           80 DRTIVFVA-DPTFGNILNFNVGASVDLDIPRSFWSRLAGKYGNIFYWKEKGEDASIEAAVVAISNCLREPVG  150 (158)
Q Consensus        80 dg~lLlVa-d~r~~n~l~i~vG~gleg~Lpd~~a~~I~~r~gn~~~fr~~~~~~gi~aav~ai~~~L~ge~~  150 (158)
                      +|+||+|+ ++|   .++|++|+|+++.|||.+|.+|+++.+. |+||+|+|++||.+|+++|..+|+++.-
T Consensus        84 nGvLl~va~~dr---~v~I~~g~gl~~~l~d~~~~~I~~~~~~-~~fr~g~y~~gi~~~i~~i~~~l~~~~~  151 (157)
T 2kw7_A           84 NGLLLVLVLDQR---RVRFETGYGLEGYLPDGLLSRIIHDRMI-PHFRSGNYAEGLSEGVLAVQQVLDGSLE  151 (157)
T ss_dssp             TEEEEEEETTTT---EEEEEECSTTTTTCCHHHHHHHHHHTHH-HHHHHTCHHHHHHHHHHHHHHHHHHHCC
T ss_pred             CcEEEEEEeCCC---EEEEEECccHHhhCCHHHHHHHHHHHhH-HHHhcCCHHHHHHHHHHHHHHHHHHHHh
Confidence            67888888 777   5899999999999999999999988885 6999999999999999999999998864

>2kpt_A Putative secreted protein; methods development, alpha/beta, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum}

Probab=99.96  E-value=7.7e-29  Score=192.11  Aligned_cols=117  Identities=11%  Similarity=0.070  Sum_probs=108.0

Q ss_pred             CCCceeecCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEeeecCCCcch-------hhhhhhcCC-CCeEEEEE-cCCCCc
Q 038271           23 EFTSVIDVAGFLSDGQERRLAQEIADLEKDTGFKLRVLAQNYPETPGL-------AIKDFWQVD-DRTIVFVA-DPTFGN   93 (158)
Q Consensus        23 l~~~VvD~A~~Ls~~~~~~L~~~L~~lE~~TG~qv~Vlt~~~p~t~~~-------~v~~~W~~~-dg~lLlVa-d~r~~n   93 (158)
                      +++||+|.|++||++++++|+++|++||++||.||+|||  +|++.|.       +++++|+ | ||+||+|+ ++|+  
T Consensus        13 l~~~V~D~A~vLs~~~~~~L~~~l~~l~~~tg~qi~Vvt--V~sl~g~~ie~yA~~l~~~wg-G~ngvLLlVa~~dRk--   87 (148)
T 2kpt_A           13 YQDNVTDYTGQISSSDITNIQAAIDDVKASEQKVIFVVF--LSSFDGVDPETWTQQALQANG-GGNVLIYALAPEERQ--   87 (148)
T ss_dssp             CCCSEEESSSCSCHHHHHHHHHHHHHHHHHSCCEEEEEE--CSCCTTTCHHHHHHHHHHHHT-CSSEEEEEEEGGGTE--
T ss_pred             CCceeeeCCCCCCHHHHHHHHHHHHHHHHhhCCEEEEEE--ECCCCCCCHHHHHHHHHHHhC-CCCcEEEEEEeCCCE--
Confidence            678999999999999999999999999999999999999  9999774       7889999 7 66777777 8883  


Q ss_pred             eeEEeeccccccCCCHHHHHHHhhccCCcceecccChhHHHHHHHHHHHHHhcCCCCC
Q 038271           94 ILNFNVGASVDLDIPRSFWSRLAGKYGNIFYWKEKGEDASIEAAVVAISNCLREPVGP  151 (158)
Q Consensus        94 ~l~i~vG~gleg~Lpd~~a~~I~~r~gn~~~fr~~~~~~gi~aav~ai~~~L~ge~~~  151 (158)
                         |+||+|+  .|||..+.+|++.+  .|+||+|+|++||.+++++|..+|+||+.+
T Consensus        88 ---i~vg~Gl--~ltDa~~~~I~~~~--~p~fk~gdy~~g~~~~~~~i~~~l~ge~~~  138 (148)
T 2kpt_A           88 ---YGIQGGT--QWTDAELDAANNAA--FQALSQEDWAGSALALAESVGSSSSSSSGS  138 (148)
T ss_dssp             ---EEEEECT--TSCHHHHHHHHHHH--HHHHHTTCHHHHHHHHHHHHHTTCCSCCCS
T ss_pred             ---EEeccCc--ccCHHHHHHHHHhc--cchhccCCHHHHHHHHHHHHHHHHcCCCCC
Confidence               7999999  99999999999998  589999999999999999999999999854

>3pvh_A UPF0603 protein AT1G54780, chloroplastic; TAP domain, rossman fold, acid phosphatase, arabidopsis THAL thylakoid lumen, hydrolase; 1.60A {Arabidopsis thaliana} PDB: 3pw9_A 3ptj_A

Probab=99.94  E-value=1.1e-27  Score=185.50  Aligned_cols=132  Identities=14%  Similarity=0.163  Sum_probs=117.6

Q ss_pred             cccCCCCCCCCCCceeecCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEeeecCCCc-ch-------hhhhhhcCC-----
Q 038271           13 GVNKPELLPREFTSVIDVAGFLSDGQERRLAQEIADLEKDTGFKLRVLAQNYPETP-GL-------AIKDFWQVD-----   79 (158)
Q Consensus        13 ~~~~P~l~P~l~~~VvD~A~~Ls~~~~~~L~~~L~~lE~~TG~qv~Vlt~~~p~t~-~~-------~v~~~W~~~-----   79 (158)
                      .+++|++-|+..+||+|+|++||++++++|+++|++||++||.||+|+|  ++++. |.       ++|++|++|     
T Consensus         4 ~~~~p~~~~~~~~~V~D~A~vLs~~~~~~l~~~l~~le~~t~~qi~Vvt--v~~~~~g~~i~~~A~~l~~~wgiG~~~~~   81 (153)
T 3pvh_A            4 EFNILNDGPPKETYVVDDAGVLSRVTKSDLKKLLSDLEYRKKLRLNFIT--VRKLTSKADAFEYADQVLEKWYPSIEEGN   81 (153)
T ss_dssp             HHHHHHTCCCTTTSEEETTCCSCHHHHHHHHHHHHHHHHHHCCEEEEEE--ESCCSSSCCHHHHHHHHHHHHSCSHHHHT
T ss_pred             cccCCCCCCCCCcEEEeCCCCCCHHHHHHHHHHHHHHHHhhCCEEEEEE--EcCCCCCCCHHHHHHHHHHHhCCCCcCCC
Confidence            4678988888889999999999999999999999999999999999999  99987 63       889999864     


Q ss_pred             -CCeEEEEEcCCCCceeEEeeccccccCCCHHHHHHHhhccCCcceecc-cChhHHHHHHHHHHHHHhcCCCCC
Q 038271           80 -DRTIVFVADPTFGNILNFNVGASVDLDIPRSFWSRLAGKYGNIFYWKE-KGEDASIEAAVVAISNCLREPVGP  151 (158)
Q Consensus        80 -dg~lLlVad~r~~n~l~i~vG~gleg~Lpd~~a~~I~~r~gn~~~fr~-~~~~~gi~aav~ai~~~L~ge~~~  151 (158)
                       ||+||||+-++   ..+|.+|+|++..+++.+|.++.+..  .|+||+ |+|++||.+|+++|...|+||+.+
T Consensus        82 ~nGvLllva~~d---e~~i~~g~gi~d~~~~~ii~~~~~~i--~p~fk~~gdy~~gi~~~~~~i~~~l~g~~~p  150 (153)
T 3pvh_A           82 NKGIVVLITSQK---EGAITGGPAFIEAVGENILDATVSEN--LPVLATDEKYNEAVYSSAKRLVAAIDGQPDP  150 (153)
T ss_dssp             TEEEEEEETTTT---EEEEEECHHHHHHHCHHHHHHHHHTH--HHHHHHTTCHHHHHHHHHHHHHHHHTTCCCC
T ss_pred             CCEEEEEEEeCC---eEEEeCCccHHHHhhHHHHHHHHHHH--HHHHhccCCHHHHHHHHHHHHHHHHcCCCCC
Confidence             66888888333   46889999999999999999988774  479999 999999999999999999999864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	158
d2q22a1	131	Uncharacterized protein Ava3019 {Anabaena variabil	80.98

>d2q22a1 d.365.1.1 (A:8-138) Uncharacterized protein Ava3019 {Anabaena variabilis [TaxId: 1172]}

class: Alpha and beta proteins (a+b)
fold: Ava3019-like
superfamily: Ava3019-like
family: Ava3019-like
domain: Uncharacterized protein Ava3019
species: Anabaena variabilis [TaxId: 1172]

Probab=80.98  E-value=2.6  Score=30.00  Aligned_cols=72  Identities=15%  Similarity=0.264  Sum_probs=53.4

Q ss_pred             ecCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEeeecCCCcc--hhhhhhhc-------CC----CCeEEEEEcCCCCce-
Q 038271           29 DVAGFLSDGQERRLAQEIADLEKDTGFKLRVLAQNYPETPG--LAIKDFWQ-------VD----DRTIVFVADPTFGNI-   94 (158)
Q Consensus        29 D~A~~Ls~~~~~~L~~~L~~lE~~TG~qv~Vlt~~~p~t~~--~~v~~~W~-------~~----dg~lLlVad~r~~n~-   94 (158)
                      +.|-.||++|+++|-++|...-..+.|+..=++  =|+-..  .+++.+++       ++    +|.+.|=++.++++. 
T Consensus        18 rtaP~Ls~~q~~~L~~eL~~~~~~adw~tiGIm--A~s~~~Ai~ALrs~~~~~~~~~~~d~~~~~G~VfLK~NqktG~~~   95 (131)
T d2q22a1          18 DIAPILKPSEKESVRRALILITKLSDYQILGIC--ADTADEGLLAMKTYSHALGYEVPIDLPVVEGPVYIKLNGKNGLCY   95 (131)
T ss_dssp             SBCCCCCHHHHHHHHHHHHHHHHTSSEEEEEEE--ESSHHHHHHHHHHHHHHTTCCCC-CCCCCSSSEEEEEETTTCCEE
T ss_pred             ccCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEe--cCCHHHHHHHHHHHHHHhCCCccCCCCCCCCcEEEEecCCCCcEE
Confidence            457789999999999999999999999887777  454322  14444433       22    899999999999874 


Q ss_pred             eEEeeccc
Q 038271           95 LNFNVGAS  102 (158)
Q Consensus        95 l~i~vG~g  102 (158)
                      +|.+.|.|
T Consensus        96 ir~e~Glg  103 (131)
T d2q22a1          96 LDSYAGHH  103 (131)
T ss_dssp             EEECCSCC
T ss_pred             EEecCCcc
Confidence            46666643