Citrus Sinensis ID: 038304

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210----
Protein Sequence
MGQSNPHQPIFAEASPEIYTRPYPIIGPQYCVPYPVDIAIVRKFMSVTDGTFVVNDIADNLMFKVKEKLISLHKRRTVLDPYDNPIVTVTKKLISAHEKHYVFRGNSTDSKDLLFTVGKSKMIQLKTTLNVYLASNNKQDVCDFKIKGSWLERSCIFYAGESKAIVAQMQKRITAGSVMLDKDRYTVTVYPNIDYAFVVALIVILDEINNDDDD
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccEEcccccccccEEEEEEEEEcEEccccEEEEcccccEEEEEEccccccccEEEEEccccccEEEEEEccccccccEEEEEccccccccEEEEEEEEcccccccEEEEEEcccccccEEcEEEEEEEcccEEEEEEcccccEEEEEEEEEEccEEEccccEEEEEEEccccHHHHHHHHHHHHcccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccEEEEcccHcccccEEEEEEEEEEEEccccEEEEEccccEEEEEcccccccccEEEEEcccccEEEEEEEcEccccccEEEEEcccccccccEEEEEEcccEccccEEEEEEccccccccccEEEEEccccccEEEEEccccEEEEEEEEEEEccEEEEcccEEEEEEcccccHHHHHHHHHHHHHHcccccc
Coil and Loop (DISEMBL)
mgqsnphqpifaeaspeiytrpypiigpqycvpypvDIAIVRKFmsvtdgtfvvndiADNLMFKVKEKLISLHkrrtvldpydnpivTVTKKLISAHEKHyvfrgnstdskdLLFTVGKSKMIQLKTTLNVYLAsnnkqdvcdfkikgswlerSCIFYAGESKAIVAQMQKRITAgsvmldkdrytvtvypniDYAFVVALIVILDeinndddd
Flexible Loop (DISEMBL)
MGQSNPHQPIFAEASPEIYTRPYPIIGPQYCVPYPVDIAIVRKFMSVTDGTFVVNDIADNLMFKVKEKLISlhkrrtvldpydnpIVTVTKKLISAHEKHyvfrgnstdskDLLFTVGKSKMIQLKTTLNVYLASNNKQDVCDFKIKGSWLERSCIFYAGESKAIVAQMQKRITagsvmldkdRYTVTVYPNIDYAFVVALIVILDEINNDDDD
Low Complexity Region (SEG)
MGQSNPHQPIFAEASPEIYTRPYPIIGPQYCVPYPVDIAIVRKFMSVTDGTFVVNDIADNLMFKVKEKLISLHKRRTVLDPYDNPIVTVTKKLISAHEKHYVFRGNSTDSKDLLFTVGKSKMIQLKTTLNVYLASNNKQDVCDFKIKGSWLERSCIFYAGESKAIVAQMQKRITAGSVMLDKDRYTVTVYPNIDYAFVVALIVILDEINNDDDD
Disordered region (IsUnstruct)
***************PEIYTRPYPIIGPQYCVPYPVDIAIVRKFMSVTDGTFVVNDIADNLMFKVKEKLISLHKRRTVLDPYDNPIVTVTKKLISAHEKHYVFRGNSTDSKDLLFTVGKSKMIQLKTTLNVYLASNNKQDVCDFKIKGSWLERSCIFYAGESKAIVAQMQKRITAGSVMLDKDRYTVTVYPNIDYAFVVALIVILDEI******
Disordered Region (DISOPRED)
**********************YPIIGPQYCVPYPVDIAIVRKFMSVTDGTFVVNDIADNLMFKVKEKLISLHKRRTVLDPYDNPIVTVTKKLISAHEKHYVFRGNSTDSKDLLFTVGKSKMIQLKTTLNVYLASNNKQDVCDFKIKGSWLERSCIFYAGESKAIVAQMQKRITAGSVMLDKDRYTVTVYPNIDYAFVVALIVIL**IN*****
Disordered Region (DISEMBL)
********PIFAEASPEIYTRPYPIIGPQYCVPYPVDIAIVRKFMSVTDGTFVVNDIADNLMFKVKEKLISLHKRRTVLDPYDNPIVTVTKKLISAHEKHYVFRGNSTDSKDLLFTVGKSKMIQLKTTLNVYLASNNKQDVCDFKIKGSWLERSCIFYAGESKAIVAQMQKRITAGSVMLDKDRYTVTVYPNIDYAFVVALIVILDEINNDDDD
Disordered Region (DISPRO)
*****P*QPIFAEASPEIYTRPYPIIGPQYCVPYPVDIAIVRKFMSVTDGTFVVNDIADNLMFKVKEKLISLHKRRTVLDPYDNPIVTVTKKLISAHEKHYVFRGNSTDSKDLLFTVGKSKMIQLKTTLNVYLASNNKQDVCDFKIKGSWLERSCIFYAGESKAIVAQMQKRITAGSVMLDKDRYTVTVYPNIDYAFVVALIVILDEINN****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhhiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGQSNPHQPIFAEASPEIYTRPYPIIGPQYCVPYPVDIAIVRKFMSVTDGTFVVNDIADNLMFKVKEKLISLHKRRTVLDPYDNPIVTVTKKLISAHEKHYVFRGNSTDSKDLLFTVGKSKMIQLKTTLNVYLASNNKQDVCDFKIKGSWLERSCIFYAGESKAIVAQMQKRITAGSVMLDKDRYTVTVYPNIDYAFVVALIVILDEINNDDDD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	214	2.2.26 [Sep-21-2011]
Q9LZX1	217	Protein LURP-one-related	yes	no	0.878	0.866	0.563	3e-64
Q9SF24	194	Protein LURP-one-related	no	no	0.887	0.979	0.518	1e-58
Q9LQ36	224	Protein LURP-one-related	no	no	0.864	0.825	0.475	3e-50
Q9ZQR8	207	Protein LURP1 OS=Arabidop	no	no	0.887	0.917	0.468	6e-48
Q9LSQ1	185	Protein LURP-one-related	no	no	0.831	0.962	0.376	4e-32
Q9LYM3	204	Protein LURP-one-related	no	no	0.850	0.892	0.317	3e-23
B3H5L1	197	Protein LURP-one-related	no	no	0.869	0.944	0.276	4e-18
Q9LVZ8	220	Protein LURP-one-related	no	no	0.607	0.590	0.294	1e-12
Q9SSC7	210	Protein LURP-one-related	no	no	0.728	0.742	0.275	2e-09
A0MFH4	215	Protein LURP-one-related	no	no	0.878	0.874	0.248	2e-06

>sp|Q9LZX1|LOR15_ARATH Protein LURP-one-related 15 OS=Arabidopsis thaliana GN=At5g01750 PE=1 SV=1

 Score =  244 bits (624), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 106/188 (56%), Positives = 146/188 (77%)

Query: 25  IIGPQYCVPYPVDIAIVRKFMSVTDGTFVVNDIADNLMFKVKEKLISLHKRRTVLDPYDN 84
           ++ P+YC PYP+D+AIVRK MS+TDG FV+ D+  NL+FKVKE +  LH +R +LD    
Sbjct: 27  VVDPKYCAPYPIDMAIVRKMMSLTDGNFVITDVNGNLLFKVKEPVFGLHDKRVLLDGSGT 86

Query: 85  PIVTVTKKLISAHEKHYVFRGNSTDSKDLLFTVGKSKMIQLKTTLNVYLASNNKQDVCDF 144
           P+VT+ +K++S H++  VFRG STD +DLL+TV +S M+QLKT L+V+L  N  +  CDF
Sbjct: 87  PVVTLREKMVSMHDRWQVFRGGSTDQRDLLYTVKRSSMLQLKTKLDVFLGHNKDEKRCDF 146

Query: 145 KIKGSWLERSCIFYAGESKAIVAQMQKRITAGSVMLDKDRYTVTVYPNIDYAFVVALIVI 204
           ++KGSWLERSC+ YAGES AIVAQM ++ T  SV L KD ++VTVYPN+DYAF+ +L+VI
Sbjct: 147 RVKGSWLERSCVVYAGESDAIVAQMHRKHTVQSVFLGKDNFSVTVYPNVDYAFIASLVVI 206

Query: 205 LDEINNDD 212
           LD++N +D
Sbjct: 207 LDDVNRED 214

Might be related to the phospholipid scramblase and tubby-like superfamily of membrane tethered transcription factors.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9SF24|LOR10_ARATH Protein LURP-one-related 10 OS=Arabidopsis thaliana GN=At3g11740 PE=2 SV=2

 Score =  225 bits (574), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 99/191 (51%), Positives = 145/191 (75%), Gaps = 1/191 (0%)

Query: 25  IIGPQYCVPYPVDIAIVRKFMSVTDGTFVVNDIADNLMFKVKEKLISLHKRRTVLDPYDN 84
           I+ P +C PYP+++ IVRK M++TDG F V D+  NL+FKVKE L S+  +R +LD YD 
Sbjct: 3   IVSPNFCAPYPIELGIVRKVMTLTDGNFAVTDVNGNLLFKVKEPLFSISDKRILLDAYDT 62

Query: 85  PIVTVTKKLISAHEKHYVFRGNSTDSKDLLFTVGKSKMIQ-LKTTLNVYLASNNKQDVCD 143
           PI+T+ +  +S H++  V+RG STD  DLL+T+ +S MIQ +K  L+++LA N +  +CD
Sbjct: 63  PILTLRENKVSLHDRWLVYRGKSTDQSDLLYTLKRSSMIQIMKPKLDIFLAHNKEMKICD 122

Query: 144 FKIKGSWLERSCIFYAGESKAIVAQMQKRITAGSVMLDKDRYTVTVYPNIDYAFVVALIV 203
           F +KGSW++RSC+ YAG+S AIVAQM K+ TA S+++ K  ++VTVYPN+D+AF+V+LIV
Sbjct: 123 FHVKGSWIDRSCVVYAGKSDAIVAQMHKKHTAQSILIGKSNFSVTVYPNVDFAFIVSLIV 182

Query: 204 ILDEINNDDDD 214
           ILD+IN +D +
Sbjct: 183 ILDDINREDSE 193

Might be related to the phospholipid scramblase and tubby-like superfamily of membrane tethered transcription factors.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LQ36|LOR1_ARATH Protein LURP-one-related 1 OS=Arabidopsis thaliana GN=At1g33840 PE=2 SV=2

 Score =  197 bits (502), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 88/185 (47%), Positives = 134/185 (72%)

Query: 25  IIGPQYCVPYPVDIAIVRKFMSVTDGTFVVNDIADNLMFKVKEKLISLHKRRTVLDPYDN 84
           I+ P+YC  +PVD+AIVRK + +TDG FV+ +   NL+FKVK+   SLH++R ++D +  
Sbjct: 27  IVDPKYCSLHPVDLAIVRKVLKITDGNFVITNAEGNLLFKVKDPFFSLHEKRILMDGFGT 86

Query: 85  PIVTVTKKLISAHEKHYVFRGNSTDSKDLLFTVGKSKMIQLKTTLNVYLASNNKQDVCDF 144
            ++T+  K+++ H++  VFRG ST+  DLL+TV +S M+Q+ T L+V+LA N +Q  CD+
Sbjct: 87  KVLTLKGKIMTMHDRWLVFRGGSTEEVDLLYTVKRSNMVQITTKLDVFLADNIEQKKCDY 146

Query: 145 KIKGSWLERSCIFYAGESKAIVAQMQKRITAGSVMLDKDRYTVTVYPNIDYAFVVALIVI 204
           +++G WLE SC  YAG+S  I+AQM+++ T  SV+  KD + +TV PN+DYAF+ +LIVI
Sbjct: 147 RLEGVWLETSCFVYAGDSDIILAQMREKKTMQSVLFGKDNFCLTVNPNVDYAFIASLIVI 206

Query: 205 LDEIN 209
           L EI 
Sbjct: 207 LVEIQ 211

Might be related to the phospholipid scramblase and tubby-like superfamily of membrane tethered transcription factors.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZQR8|LURP1_ARATH Protein LURP1 OS=Arabidopsis thaliana GN=LURP1 PE=2 SV=1

 Score =  190 bits (483), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 89/190 (46%), Positives = 127/190 (66%)

Query: 21  RPYPIIGPQYCVPYPVDIAIVRKFMSVTDGTFVVNDIADNLMFKVKEKLISLHKRRTVLD 80
           +P  I+G +YC P PV +AIVRK M +TDG FV+      L+FKVK+ L SLH +R +LD
Sbjct: 3   QPCVIVGSKYCSPNPVGLAIVRKVMKITDGNFVITSADGKLLFKVKDPLFSLHGKRILLD 62

Query: 81  PYDNPIVTVTKKLISAHEKHYVFRGNSTDSKDLLFTVGKSKMIQLKTTLNVYLASNNKQD 140
                ++T+  K+++ H++  VFRG ST+   LL+TV +S MIQL   L V+LA+N ++ 
Sbjct: 63  CSGAKVLTLRGKMMTMHDRWQVFRGGSTEEGALLYTVKRSSMIQLAPKLEVFLANNVEEK 122

Query: 141 VCDFKIKGSWLERSCIFYAGESKAIVAQMQKRITAGSVMLDKDRYTVTVYPNIDYAFVVA 200
           +CDFK+KG+WL+ SC+ YAG+S  I+A M  + T       KD ++VTV  N+DYAF+ +
Sbjct: 123 ICDFKVKGAWLDDSCVVYAGDSDTIIAHMCGKQTMRGFFFGKDHFSVTVDKNVDYAFIAS 182

Query: 201 LIVILDEINN 210
           LIVIL EI  
Sbjct: 183 LIVILVEIEK 192

Involved in basal defense against virulent oomycetes. Might be related to the phospholipid scramblase and tubby-like superfamily of membrane tethered transcription factors.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LSQ1|LOR13_ARATH Protein LURP-one-related 13 OS=Arabidopsis thaliana GN=At3g16900 PE=3 SV=1

 Score =  137 bits (346), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 75/199 (37%), Positives = 110/199 (55%), Gaps = 21/199 (10%)

Query: 12  AEASPEIYTRPYPIIGPQYCVPYPVDIAIVRKFMSVTDGTFVVNDIADNLMFKVKEKLIS 71
           A+  P       P++G ++  P P+D+ I             V D   N +FKVK  L  
Sbjct: 2   AKQDPTSSNTMLPLVGSEFVRPQPLDLTITGD---------TVKDATGNKVFKVKTPLFG 52

Query: 72  LHKRRTVLDPYDNPIVTVTKKLISAHEKHYVFRGNSTDSKDLLFTVGKSKMIQLKTTLNV 131
           LH +R ++DP D+PIVT+  K+ S H++  V+RG+  D K  +FTV +S  +QLKT + V
Sbjct: 53  LHNKRILVDPNDSPIVTMKMKVTSKHDRWQVYRGSDLDDK--IFTVKRSSTVQLKTRVEV 110

Query: 132 YLASNN-KQDVCDFKIKGSWLERSCIFYAGESKAIVAQMQKRITAGSVMLDKDRYTVTVY 190
           +L  N  ++  CDF IKG +++R+C  Y  +S  I+AQ         V    +R   T+Y
Sbjct: 111 FLKHNQTRESSCDFTIKGRFMKRACTIYVADSTKIIAQ---------VYEGHERLVATIY 161

Query: 191 PNIDYAFVVALIVILDEIN 209
           PN+DYAF+V LI I D IN
Sbjct: 162 PNVDYAFIVTLIFIFDLIN 180

Might be related to the phospholipid scramblase and tubby-like superfamily of membrane tethered transcription factors.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LYM3|LOR14_ARATH Protein LURP-one-related 14 OS=Arabidopsis thaliana GN=At3g56180 PE=2 SV=2

 Score =  108 bits (270), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 60/189 (31%), Positives = 108/189 (57%), Gaps = 7/189 (3%)

Query: 25  IIGPQYCVPYPVDIAIVRKFMSVTDGTFVVNDIADNLMFKVKEKLISLHKRRTVLDPYDN 84
           ++  Q+C PYP+D+ + RK  + +   + V D + NL+ ++  +    +++R + DP   
Sbjct: 18  VVSDQFCNPYPMDLLVKRKVQNFSKDYYEVFDPSGNLLLQIDGQAWGFNRKRVMRDPAGF 77

Query: 85  PIVTVTKKLISAHEKHYVFRGNSTDSKDLLFTVGKSKMIQLKTTLNVYLASNN---KQDV 141
            I+++ +K ++   K  V  G S + +DLLFTV +S+ + LKT+++V+L  NN   K + 
Sbjct: 78  TILSMRQKGLALKNKWEVHGGESKEREDLLFTVQQSQAVSLKTSVDVFLPENNNVKKTNT 137

Query: 142 CDFKIKGSWLERSCIFYAGESKAIVAQMQKRITAGSVMLDKDRYTVTVYPNIDYAFVVAL 201
           CDF   G +   S  F   ++ A++A +    T GS    K  + V V P +DYAF++AL
Sbjct: 138 CDFHASGGYSNIS--FKVFKADALIAGVG--FTWGSFCKGKYNFKVRVNPEVDYAFIIAL 193

Query: 202 IVILDEINN 210
           +V++D+  N
Sbjct: 194 LVMVDDNEN 202

Might be related to the phospholipid scramblase and tubby-like superfamily of membrane tethered transcription factors.

Arabidopsis thaliana (taxid: 3702)

>sp|B3H5L1|LOR9_ARATH Protein LURP-one-related 9 OS=Arabidopsis thaliana GN=At3g10986 PE=3 SV=1

 Score = 91.3 bits (225), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 53/192 (27%), Positives = 106/192 (55%), Gaps = 6/192 (3%)

Query: 25  IIGPQYCVPYPVDIAIVRKFMSVTDGTFVVNDIADNLMFKVKEKLISLHKRRTVLDPYDN 84
           ++G  +C PY  ++ + R+  S+    + V D+++NL+F V   + ++ ++R + D    
Sbjct: 4   VVGEMFCNPYTTELVVRRRRESLKRERYDVFDLSNNLIFTVDGGIWNIRRKRVLRDAAGI 63

Query: 85  PIVTV-TKKLISAHEKHYVFRGNSTDSKDLLFTVGKSKMIQLKTTLNVYLASNNKQ-DVC 142
           P++++ TK L+       V++G+ST+S +LLF+  +  ++  KT+L+V L  +    D+ 
Sbjct: 64  PLLSMRTKGLVPMRYNWEVYKGDSTESDNLLFSAREPNLLSFKTSLDVTLPPDQSSTDIS 123

Query: 143 ----DFKIKGSWLERSCIFYAGESKAIVAQMQKRITAGSVMLDKDRYTVTVYPNIDYAFV 198
               DF+  G ++  S   +      ++A++    T G ++     + V V P +D+AFV
Sbjct: 124 SVEPDFQTFGRYIGSSFKLFEPIHNTLLAEVVHDFTWGGLIKGSYSFKVRVNPYVDFAFV 183

Query: 199 VALIVILDEINN 210
           VAL+VI D+ +N
Sbjct: 184 VALLVITDDTSN 195

Might be related to the phospholipid scramblase and tubby-like superfamily of membrane tethered transcription factors.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LVZ8|LOR12_ARATH Protein LURP-one-related 12 OS=Arabidopsis thaliana GN=At3g15810 PE=2 SV=1

 Score = 73.2 bits (178), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 40/136 (29%), Positives = 79/136 (58%), Gaps = 6/136 (4%)

Query: 78  VLDPYDNPIVTVTKKLISAHEKHYVFRGNSTDSKDLLFTVGKSKMIQLKTTLNVYLASNN 137
           ++D     ++TV +K  + H++   F G  ++ +  +F+V +S +I  + T+ V +    
Sbjct: 75  LMDATGKCLLTVKRKRPTLHQRWEGFLGERSEGQKPIFSVRRSSIIG-RCTMEVEVYDGT 133

Query: 138 KQDVCDFKIKGSWLERSCIFYAGESKAIVAQMQKRITAGS-VMLDKDRYTVTVYPNIDYA 196
            ++   + I G + +RSC+ Y    K  VA++++++ A + VML +D +T+ + P  D A
Sbjct: 134 GEE---YIIDGDFSQRSCLIYD-TKKCTVAEIKRKVDASTNVMLGRDVFTLEIKPGFDGA 189

Query: 197 FVVALIVILDEINNDD 212
           F + L+V+LD+IN DD
Sbjct: 190 FAMGLVVVLDQINGDD 205

Might be related to the phospholipid scramblase and tubby-like superfamily of membrane tethered transcription factors.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SSC7|LOR5_ARATH Protein LURP-one-related 5 OS=Arabidopsis thaliana GN=At1g80120 PE=1 SV=1

 Score = 62.8 bits (151), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 89/167 (53%), Gaps = 11/167 (6%)

Query: 52  FVVNDIADNLMFKVKEKLISLHKRRT----VLDPYDNPIVTVTKKLISAHEKHYVFRGNS 107
           F V D   +L+F+V +     + R T    ++D +   ++T+ +K  S   +   + G  
Sbjct: 33  FTVYDCKGSLVFRV-DSYGGPNTRDTDEVVLMDAHGRCLLTLRRKRPSLRRRWEGYLGER 91

Query: 108 TDSKDLLFTVGKSKMIQLKT-TLNVYLASNNKQDVCDFKIKGSWLERSCIFYAGESKAIV 166
           +D +  +F V +S +I   + T+ VY          ++ I+GS+  R+C     E++  V
Sbjct: 92  SDGQKPIFGVRRSSIIGRNSVTVEVY----GDYQCSEYLIEGSFGARNCTVVEAETRRKV 147

Query: 167 AQMQKRITAGS-VMLDKDRYTVTVYPNIDYAFVVALIVILDEINNDD 212
           A++++++ A + VML KD +++ V P  D AF + L+++LD+I  DD
Sbjct: 148 AEIRRKVDASTNVMLGKDVFSLNVKPGFDGAFAMGLVLVLDQIYGDD 194

Might be related to the phospholipid scramblase and tubby-like superfamily of membrane tethered transcription factors.

Arabidopsis thaliana (taxid: 3702)

>sp|A0MFH4|LOR16_ARATH Protein LURP-one-related 16 OS=Arabidopsis thaliana GN=At5g20640 PE=2 SV=2

 Score = 52.8 bits (125), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 50/201 (24%), Positives = 89/201 (44%), Gaps = 13/201 (6%)

Query: 24  PIIGPQYCVPYPVDIAIVRKFMSVTDGTFVVNDIADNLMFKVKEKLISLHKRRTVLDPYD 83
           P++  +Y       + + R+   V  G FVV++    ++F+V    +   K + +L   D
Sbjct: 11  PVLSRRYSSESETVLVVRRRPPMVNGGGFVVSNSKQVVVFRVDGCGVLGTKGKLLLRNGD 70

Query: 84  NPIVTVTKKLIS-------AHEKHYVFRGNSTDSKDLLFTVGKSKMIQLKTTLNVYLASN 136
              + + +K+          H K   F  ++  ++ L+FT+   K   L    ++ +  +
Sbjct: 71  GNDLLLIRKMGGIVQALNMVHNKWEGFGYDNEGTERLVFTLKDPKDSCLVQNSSIKILVH 130

Query: 137 NKQDVCD------FKIKGSWLERSCIFYAGESKAIVAQMQKRITAGSVMLDKDRYTVTVY 190
            K            +IKGS+ ER+C     + KAI     ++     V   KD Y V V 
Sbjct: 131 GKPPKISSTRNNYVEIKGSFAERACNIMDSDGKAIAKVRIEKEMEEMVGNKKDLYHVIVK 190

Query: 191 PNIDYAFVVALIVILDEINND 211
           PN+D +F+V LI ILD I+ +
Sbjct: 191 PNVDQSFIVGLIAILDYIHGE 211

Might be related to the phospholipid scramblase and tubby-like superfamily of membrane tethered transcription factors.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	214
388504720	214	unknown [Lotus japonicus]	0.934	0.934	0.575	2e-66
388516681	216	unknown [Lotus japonicus]	0.929	0.921	0.577	2e-66
356568182	216	PREDICTED: protein LURP-one-related 15-l	0.971	0.962	0.555	6e-66
357506493	212	hypothetical protein MTR_7g072120 [Medic	0.990	1.0	0.542	9e-66
357506501	226	hypothetical protein MTR_7g072170 [Medic	0.967	0.915	0.541	9e-66
356532197	215	PREDICTED: protein LURP-one-related 15-l	0.967	0.962	0.564	2e-65
357506497	215	hypothetical protein MTR_7g072140 [Medic	0.976	0.972	0.540	4e-65
255637572	216	unknown [Glycine max]	0.971	0.962	0.545	2e-64
30679390	217	LURP-one-related 15 protein [Arabidopsis	0.878	0.866	0.563	1e-62
297810225	217	hypothetical protein ARALYDRAFT_486891 [	0.878	0.866	0.569	5e-62

>gi|388504720|gb|AFK40426.1| unknown [Lotus japonicus]

 Score =  257 bits (657), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 115/200 (57%), Positives = 155/200 (77%)

Query: 13  EASPEIYTRPYPIIGPQYCVPYPVDIAIVRKFMSVTDGTFVVNDIADNLMFKVKEKLISL 72
            AS  +   P  + GPQYC PYPVD+AIV+K M+++DG FVV DI  N++FKVK  L++L
Sbjct: 14  SASAPMPAVPTTVFGPQYCAPYPVDLAIVKKVMTISDGNFVVTDINGNIVFKVKGSLLTL 73

Query: 73  HKRRTVLDPYDNPIVTVTKKLISAHEKHYVFRGNSTDSKDLLFTVGKSKMIQLKTTLNVY 132
             RR ++D   NPI T+ +K+++AH++   +RG ST++KDL+FT+ +S +IQ KT L+V+
Sbjct: 74  RDRRVLIDAAGNPIATLRRKIMTAHDRWQAYRGESTEAKDLIFTLKRSSLIQFKTKLDVF 133

Query: 133 LASNNKQDVCDFKIKGSWLERSCIFYAGESKAIVAQMQKRITAGSVMLDKDRYTVTVYPN 192
           LA+N K+DVCDFK+KGSW ERSC+ YAGES  IVAQM K+ T  S+++ KD +TVTVYPN
Sbjct: 134 LATNTKEDVCDFKVKGSWFERSCVVYAGESNTIVAQMHKKHTVQSILIGKDNFTVTVYPN 193

Query: 193 IDYAFVVALIVILDEINNDD 212
           IDYAF+VALIVILDEIN D+
Sbjct: 194 IDYAFIVALIVILDEINEDE 213

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388516681|gb|AFK46402.1| unknown [Lotus japonicus]

 Score =  257 bits (657), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 115/199 (57%), Positives = 155/199 (77%)

Query: 14  ASPEIYTRPYPIIGPQYCVPYPVDIAIVRKFMSVTDGTFVVNDIADNLMFKVKEKLISLH 73
           AS  +   P  + GPQYC PYPVD+AIV+K M+++DG FVV DI  N++FKVK  L++L 
Sbjct: 15  ASAPMPAVPTTVFGPQYCAPYPVDLAIVKKVMTISDGNFVVTDINGNIVFKVKGSLLTLR 74

Query: 74  KRRTVLDPYDNPIVTVTKKLISAHEKHYVFRGNSTDSKDLLFTVGKSKMIQLKTTLNVYL 133
            RR ++D   NPI T+ +K+++AH++   +RG ST++KDL+FT+ +S +IQ KT L+V+L
Sbjct: 75  DRRVLIDAAGNPIATLRRKIMTAHDRWQAYRGESTEAKDLIFTLKRSSLIQFKTKLDVFL 134

Query: 134 ASNNKQDVCDFKIKGSWLERSCIFYAGESKAIVAQMQKRITAGSVMLDKDRYTVTVYPNI 193
           A+N K+DVCDFK+KGSW ERSC+ YAGES  IVAQM K+ T  S+++ KD +TVTVYPNI
Sbjct: 135 ATNTKEDVCDFKVKGSWFERSCVVYAGESNTIVAQMHKKHTVQSILIGKDNFTVTVYPNI 194

Query: 194 DYAFVVALIVILDEINNDD 212
           DYAF+VALIVILDEIN D+
Sbjct: 195 DYAFIVALIVILDEINEDE 213

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356568182|ref|XP_003552292.1| PREDICTED: protein LURP-one-related 15-like [Glycine max]

 Score =  256 bits (653), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 116/209 (55%), Positives = 162/209 (77%), Gaps = 1/209 (0%)

Query: 6   PHQPIFAEASPEIYTRPYPIIGPQYCVPYPVDIAIVRKFMSVTDGTFVVNDIADNLMFKV 65
           P QP +   S  +   P  +IGPQ+C PYP+D+A+V+K M+++DG FVV D+  N++FKV
Sbjct: 8   PAQP-YPSTSVPMPAVPTAVIGPQFCAPYPLDLAVVKKVMTLSDGNFVVTDVNGNVVFKV 66

Query: 66  KEKLISLHKRRTVLDPYDNPIVTVTKKLISAHEKHYVFRGNSTDSKDLLFTVGKSKMIQL 125
           K  L++L  RR ++D   NP+VT+ +K+++AH++   FRG ST++KDL+FT+ +S +IQ 
Sbjct: 67  KGSLMTLRDRRILVDAAGNPLVTLRRKIMTAHDRWQAFRGESTEAKDLIFTLKRSSLIQF 126

Query: 126 KTTLNVYLASNNKQDVCDFKIKGSWLERSCIFYAGESKAIVAQMQKRITAGSVMLDKDRY 185
           KT L+V+LA+N K+DVCDFK+KGSWLERSC+ YAGES  IVAQM K+ T  S+++ KD++
Sbjct: 127 KTKLDVFLANNTKEDVCDFKVKGSWLERSCVVYAGESNNIVAQMHKKHTVQSILIGKDQF 186

Query: 186 TVTVYPNIDYAFVVALIVILDEINNDDDD 214
            VTVYPNIDYAFVVALIVILDEIN D+ +
Sbjct: 187 MVTVYPNIDYAFVVALIVILDEINEDEKE 215

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357506493|ref|XP_003623535.1| hypothetical protein MTR_7g072120 [Medicago truncatula] gi|355498550|gb|AES79753.1| hypothetical protein MTR_7g072120 [Medicago truncatula] gi|388494416|gb|AFK35274.1| unknown [Medicago truncatula]

 Score =  255 bits (651), Expect = 9e-66,   Method: Compositional matrix adjust.
 Identities = 116/214 (54%), Positives = 158/214 (73%), Gaps = 2/214 (0%)

Query: 1   MGQSNPHQPIFAEASPEIYTRPYPIIGPQYCVPYPVDIAIVRKFMSVTDGTFVVNDIADN 60
           M    P QP  +   P + T    I GPQYC PYPVD+A+V+K M+++DG F V D+  N
Sbjct: 1   MAYPYPAQPSASAPMPPLPTAA--IFGPQYCAPYPVDLAVVKKVMTISDGNFAVTDVNGN 58

Query: 61  LMFKVKEKLISLHKRRTVLDPYDNPIVTVTKKLISAHEKHYVFRGNSTDSKDLLFTVGKS 120
           ++FKVK  L++L  RR +LD   NPI T+ +K+++ H++   +RG ST +KDL+FT+ +S
Sbjct: 59  IVFKVKGSLLTLRDRRVLLDAAGNPITTLRRKIVTMHDRWEAYRGESTHAKDLIFTLKRS 118

Query: 121 KMIQLKTTLNVYLASNNKQDVCDFKIKGSWLERSCIFYAGESKAIVAQMQKRITAGSVML 180
            +IQ+KT L+V+LA N K+DVCDFK++GSWLERSCI YAGES  IVAQM K+ T  S+++
Sbjct: 119 SLIQMKTKLDVFLAGNTKEDVCDFKVRGSWLERSCIVYAGESNNIVAQMHKKHTVTSILM 178

Query: 181 DKDRYTVTVYPNIDYAFVVALIVILDEINNDDDD 214
           DKD ++VTVYPN+DYAF+VALIVILDE N D+ D
Sbjct: 179 DKDHFSVTVYPNVDYAFIVALIVILDETNEDEKD 212

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357506501|ref|XP_003623539.1| hypothetical protein MTR_7g072170 [Medicago truncatula] gi|355498554|gb|AES79757.1| hypothetical protein MTR_7g072170 [Medicago truncatula]

 Score =  255 bits (651), Expect = 9e-66,   Method: Compositional matrix adjust.
 Identities = 112/207 (54%), Positives = 160/207 (77%)

Query: 6   PHQPIFAEASPEIYTRPYPIIGPQYCVPYPVDIAIVRKFMSVTDGTFVVNDIADNLMFKV 65
           P+QP  + ++P +   P  I GPQYC PYP+D+A+V+K ++++DG FVV D+  N++FKV
Sbjct: 4   PYQPQPSASAPPMPVLPTTIFGPQYCAPYPLDLAVVKKVIAISDGNFVVTDVNGNIVFKV 63

Query: 66  KEKLISLHKRRTVLDPYDNPIVTVTKKLISAHEKHYVFRGNSTDSKDLLFTVGKSKMIQL 125
           K  L++   RR ++D  DNPI T+ +K+++ H++   +RG STDSKDL+FT+ +S +IQ+
Sbjct: 64  KVSLLTFRDRRVLVDAADNPITTLRRKIVTMHDRWEAYRGESTDSKDLIFTLKRSSLIQM 123

Query: 126 KTTLNVYLASNNKQDVCDFKIKGSWLERSCIFYAGESKAIVAQMQKRITAGSVMLDKDRY 185
           KT L+V+LA+N K+DVCDFK+KGSW ERSCI YAGES  IVAQM K+ T  S+++ KD +
Sbjct: 124 KTKLDVFLANNTKEDVCDFKVKGSWFERSCIVYAGESNNIVAQMHKKHTVQSLLIGKDHF 183

Query: 186 TVTVYPNIDYAFVVALIVILDEINNDD 212
            VT+YPN+DYAF+VALIVIL+EIN D+
Sbjct: 184 MVTIYPNVDYAFIVALIVILNEINADE 210

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356532197|ref|XP_003534660.1| PREDICTED: protein LURP-one-related 15-like [Glycine max]

 Score =  254 bits (648), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 118/209 (56%), Positives = 161/209 (77%), Gaps = 2/209 (0%)

Query: 6   PHQPIFAEASPEIYTRPYPIIGPQYCVPYPVDIAIVRKFMSVTDGTFVVNDIADNLMFKV 65
           P QP +  AS  +   P  +IGPQ+C PYPVD+A+V+K M+++D  FVV D+  N++FKV
Sbjct: 8   PAQP-YPSASAPMPAVPSAVIGPQFCAPYPVDLAVVKKVMTISDN-FVVTDVNGNIVFKV 65

Query: 66  KEKLISLHKRRTVLDPYDNPIVTVTKKLISAHEKHYVFRGNSTDSKDLLFTVGKSKMIQL 125
           K  L +L  RR +LD   NP+VT+ +K+++AH++   FRG STD+KDL+FT+ +S +IQ 
Sbjct: 66  KGSLATLRDRRVLLDAAGNPLVTLRRKIMTAHDRWQAFRGESTDAKDLIFTLKRSSLIQF 125

Query: 126 KTTLNVYLASNNKQDVCDFKIKGSWLERSCIFYAGESKAIVAQMQKRITAGSVMLDKDRY 185
           KT L+V+LA+N K+DVCDFK+KGSWLERSC+ YAGES  IVAQM K+ T  S+++ KD +
Sbjct: 126 KTKLHVFLANNTKEDVCDFKVKGSWLERSCVVYAGESNNIVAQMHKKHTVQSILIGKDHF 185

Query: 186 TVTVYPNIDYAFVVALIVILDEINNDDDD 214
            VTVYPNIDYAF+VALIVILDEIN+D+ +
Sbjct: 186 MVTVYPNIDYAFIVALIVILDEINDDEKE 214

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357506497|ref|XP_003623537.1| hypothetical protein MTR_7g072140 [Medicago truncatula] gi|355498552|gb|AES79755.1| hypothetical protein MTR_7g072140 [Medicago truncatula]

 Score =  253 bits (646), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 113/209 (54%), Positives = 156/209 (74%)

Query: 6   PHQPIFAEASPEIYTRPYPIIGPQYCVPYPVDIAIVRKFMSVTDGTFVVNDIADNLMFKV 65
           P+QP    ++P +   P  I G QYC PYPVD+A+V+K M+++DG F V D+  N++FKV
Sbjct: 4   PYQPQQYASAPPMPAHPTAIFGQQYCAPYPVDLAVVKKVMTISDGNFAVTDVNGNIVFKV 63

Query: 66  KEKLISLHKRRTVLDPYDNPIVTVTKKLISAHEKHYVFRGNSTDSKDLLFTVGKSKMIQL 125
           K  L++L  RR ++D    PI T+ +K+++ H++   FRG STD+KDL+FT+ +S +IQ 
Sbjct: 64  KGSLLTLRDRRVLVDAAGYPIATLRRKIMTMHDRWEAFRGESTDAKDLIFTLKRSSLIQF 123

Query: 126 KTTLNVYLASNNKQDVCDFKIKGSWLERSCIFYAGESKAIVAQMQKRITAGSVMLDKDRY 185
           KT L+V+LASN K++VCDFK+KGSW +RSCI YAGES  IVAQM K+ T  S+++ KD +
Sbjct: 124 KTKLDVFLASNKKENVCDFKVKGSWFDRSCIVYAGESNNIVAQMHKKYTVQSILIGKDNF 183

Query: 186 TVTVYPNIDYAFVVALIVILDEINNDDDD 214
            VT+YPN+DYAF+VALIVILDEIN DD D
Sbjct: 184 MVTIYPNVDYAFIVALIVILDEINRDDKD 212

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255637572|gb|ACU19112.1| unknown [Glycine max]

 Score =  251 bits (640), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 114/209 (54%), Positives = 160/209 (76%), Gaps = 1/209 (0%)

Query: 6   PHQPIFAEASPEIYTRPYPIIGPQYCVPYPVDIAIVRKFMSVTDGTFVVNDIADNLMFKV 65
           P QP +   S  +   P  +IGPQ+C  YP+D+A+V+K M+++DG FVV D+  N++FKV
Sbjct: 8   PAQP-YPSTSVPMPAVPTAVIGPQFCASYPLDLAVVKKVMTLSDGNFVVTDVNGNVVFKV 66

Query: 66  KEKLISLHKRRTVLDPYDNPIVTVTKKLISAHEKHYVFRGNSTDSKDLLFTVGKSKMIQL 125
           K  L++L  RR ++D   NP+VT+ +K+++ H++   FRG ST++KDL+FT+ +S +IQ 
Sbjct: 67  KGSLMTLRDRRILVDAAGNPLVTLRRKIMTTHDRWQAFRGESTEAKDLIFTLKRSSLIQF 126

Query: 126 KTTLNVYLASNNKQDVCDFKIKGSWLERSCIFYAGESKAIVAQMQKRITAGSVMLDKDRY 185
           KT L+V+LA+N K+DVCDFK+KGSWLERSC+ YAGES  IVAQM K+ T  S+++ KD++
Sbjct: 127 KTKLDVFLANNTKEDVCDFKVKGSWLERSCVVYAGESNNIVAQMHKKHTVQSILIGKDQF 186

Query: 186 TVTVYPNIDYAFVVALIVILDEINNDDDD 214
            VTVYPNIDYAFVVALIVILDEIN D+ +
Sbjct: 187 MVTVYPNIDYAFVVALIVILDEINEDEKE 215

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30679390|ref|NP_850751.1| LURP-one-related 15 protein [Arabidopsis thaliana] gi|75181359|sp|Q9LZX1.1|LOR15_ARATH RecName: Full=Protein LURP-one-related 15 gi|13926237|gb|AAK49593.1|AF372877_1 AT5g01750/T20L15_20 [Arabidopsis thaliana] gi|7329648|emb|CAB82745.1| putative protein [Arabidopsis thaliana] gi|22655412|gb|AAM98298.1| At5g01750/T20L15_20 [Arabidopsis thaliana] gi|332003004|gb|AED90387.1| LURP-one-related 15 protein [Arabidopsis thaliana]

 Score =  244 bits (624), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 106/188 (56%), Positives = 146/188 (77%)

Query: 25  IIGPQYCVPYPVDIAIVRKFMSVTDGTFVVNDIADNLMFKVKEKLISLHKRRTVLDPYDN 84
           ++ P+YC PYP+D+AIVRK MS+TDG FV+ D+  NL+FKVKE +  LH +R +LD    
Sbjct: 27  VVDPKYCAPYPIDMAIVRKMMSLTDGNFVITDVNGNLLFKVKEPVFGLHDKRVLLDGSGT 86

Query: 85  PIVTVTKKLISAHEKHYVFRGNSTDSKDLLFTVGKSKMIQLKTTLNVYLASNNKQDVCDF 144
           P+VT+ +K++S H++  VFRG STD +DLL+TV +S M+QLKT L+V+L  N  +  CDF
Sbjct: 87  PVVTLREKMVSMHDRWQVFRGGSTDQRDLLYTVKRSSMLQLKTKLDVFLGHNKDEKRCDF 146

Query: 145 KIKGSWLERSCIFYAGESKAIVAQMQKRITAGSVMLDKDRYTVTVYPNIDYAFVVALIVI 204
           ++KGSWLERSC+ YAGES AIVAQM ++ T  SV L KD ++VTVYPN+DYAF+ +L+VI
Sbjct: 147 RVKGSWLERSCVVYAGESDAIVAQMHRKHTVQSVFLGKDNFSVTVYPNVDYAFIASLVVI 206

Query: 205 LDEINNDD 212
           LD++N +D
Sbjct: 207 LDDVNRED 214

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297810225|ref|XP_002872996.1| hypothetical protein ARALYDRAFT_486891 [Arabidopsis lyrata subsp. lyrata] gi|297318833|gb|EFH49255.1| hypothetical protein ARALYDRAFT_486891 [Arabidopsis lyrata subsp. lyrata]

 Score =  243 bits (619), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 107/188 (56%), Positives = 145/188 (77%)

Query: 25  IIGPQYCVPYPVDIAIVRKFMSVTDGTFVVNDIADNLMFKVKEKLISLHKRRTVLDPYDN 84
           I+ P+YC PYPVD+AIVRK M +TDG FV+ D+  NL+FKVKE +  LH +R +LD   N
Sbjct: 27  IVDPRYCAPYPVDLAIVRKMMKLTDGNFVITDVNGNLLFKVKEPVFGLHDKRILLDGSGN 86

Query: 85  PIVTVTKKLISAHEKHYVFRGNSTDSKDLLFTVGKSKMIQLKTTLNVYLASNNKQDVCDF 144
           P+VT+ +K++S H++  VFRG ST+ +DLL+TV +S M+QLKT L+V+L  N  +  CDF
Sbjct: 87  PVVTLREKMVSMHDRWQVFRGGSTEQRDLLYTVKRSSMLQLKTKLDVFLGHNKDEKRCDF 146

Query: 145 KIKGSWLERSCIFYAGESKAIVAQMQKRITAGSVMLDKDRYTVTVYPNIDYAFVVALIVI 204
           ++KGSWLERSC+ YAGES AIVAQM +  T  SV L KD ++VTVYPN+DYAF+ +L+VI
Sbjct: 147 RVKGSWLERSCVVYAGESDAIVAQMHRMHTVQSVFLGKDNFSVTVYPNVDYAFIASLVVI 206

Query: 205 LDEINNDD 212
           LD++N +D
Sbjct: 207 LDDVNRED 214

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	214
TAIR|locus:2181082	217	AT5G01750 "AT5G01750" [Arabido	0.878	0.866	0.563	1.3e-59
TAIR|locus:2081481	194	AT3G11740 "AT3G11740" [Arabido	0.887	0.979	0.518	1.4e-55
TAIR|locus:2055250	207	LURP1 "AT2G14560" [Arabidopsis	0.878	0.908	0.473	5e-44
TAIR|locus:2086062	185	AT3G16900 "AT3G16900" [Arabido	0.831	0.962	0.381	3.3e-31
TAIR|locus:2078506	204	AT3G56180 "AT3G56180" [Arabido	0.850	0.892	0.317	1.4e-23
TAIR|locus:4515103053	197	AT3G10986 "AT3G10986" [Arabido	0.869	0.944	0.276	6.5e-19
TAIR|locus:2093242	220	AT3G15810 "AT3G15810" [Arabido	0.855	0.831	0.240	6.2e-14
TAIR|locus:2016299	210	AT1G80120 "AT1G80120" [Arabido	0.738	0.752	0.282	1.2e-12
TAIR|locus:2065753	182	AT2G30270 "AT2G30270" [Arabido	0.742	0.873	0.257	4.5e-11
TAIR|locus:2064686	191	AT2G05910 "AT2G05910" [Arabido	0.799	0.895	0.278	4.1e-10

TAIR|locus:2181082 AT5G01750 "AT5G01750" [Arabidopsis thaliana (taxid:3702)]

 Score = 611 (220.1 bits), Expect = 1.3e-59, P = 1.3e-59
 Identities = 106/188 (56%), Positives = 146/188 (77%)

Query:    25 IIGPQYCVPYPVDIAIVRKFMSVTDGTFVVNDIADNLMFKVKEKLISLHKRRTVLDPYDN 84
             ++ P+YC PYP+D+AIVRK MS+TDG FV+ D+  NL+FKVKE +  LH +R +LD    
Sbjct:    27 VVDPKYCAPYPIDMAIVRKMMSLTDGNFVITDVNGNLLFKVKEPVFGLHDKRVLLDGSGT 86

Query:    85 PIVTVTKKLISAHEKHYVFRGNSTDSKDLLFTVGKSKMIQLKTTLNVYLASNNKQDVCDF 144
             P+VT+ +K++S H++  VFRG STD +DLL+TV +S M+QLKT L+V+L  N  +  CDF
Sbjct:    87 PVVTLREKMVSMHDRWQVFRGGSTDQRDLLYTVKRSSMLQLKTKLDVFLGHNKDEKRCDF 146

Query:   145 KIKGSWLERSCIFYAGESKAIVAQMQKRITAGSVMLDKDRYTVTVYPNIDYAFVVALIVI 204
             ++KGSWLERSC+ YAGES AIVAQM ++ T  SV L KD ++VTVYPN+DYAF+ +L+VI
Sbjct:   147 RVKGSWLERSCVVYAGESDAIVAQMHRKHTVQSVFLGKDNFSVTVYPNVDYAFIASLVVI 206

Query:   205 LDEINNDD 212
             LD++N +D
Sbjct:   207 LDDVNRED 214

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=IDA

GO:0006569 "tryptophan catabolic process" evidence=RCA

GO:0006995 "cellular response to nitrogen starvation" evidence=RCA

GO:0009684 "indoleacetic acid biosynthetic process" evidence=RCA

GO:0030003 "cellular cation homeostasis" evidence=RCA

GO:0070838 "divalent metal ion transport" evidence=RCA

TAIR|locus:2081481 AT3G11740 "AT3G11740" [Arabidopsis thaliana (taxid:3702)]

 Score = 573 (206.8 bits), Expect = 1.4e-55, P = 1.4e-55
 Identities = 99/191 (51%), Positives = 145/191 (75%)

Query:    25 IIGPQYCVPYPVDIAIVRKFMSVTDGTFVVNDIADNLMFKVKEKLISLHKRRTVLDPYDN 84
             I+ P +C PYP+++ IVRK M++TDG F V D+  NL+FKVKE L S+  +R +LD YD 
Sbjct:     3 IVSPNFCAPYPIELGIVRKVMTLTDGNFAVTDVNGNLLFKVKEPLFSISDKRILLDAYDT 62

Query:    85 PIVTVTKKLISAHEKHYVFRGNSTDSKDLLFTVGKSKMIQL-KTTLNVYLASNNKQDVCD 143
             PI+T+ +  +S H++  V+RG STD  DLL+T+ +S MIQ+ K  L+++LA N +  +CD
Sbjct:    63 PILTLRENKVSLHDRWLVYRGKSTDQSDLLYTLKRSSMIQIMKPKLDIFLAHNKEMKICD 122

Query:   144 FKIKGSWLERSCIFYAGESKAIVAQMQKRITAGSVMLDKDRYTVTVYPNIDYAFVVALIV 203
             F +KGSW++RSC+ YAG+S AIVAQM K+ TA S+++ K  ++VTVYPN+D+AF+V+LIV
Sbjct:   123 FHVKGSWIDRSCVVYAGKSDAIVAQMHKKHTAQSILIGKSNFSVTVYPNVDFAFIVSLIV 182

Query:   204 ILDEINNDDDD 214
             ILD+IN +D +
Sbjct:   183 ILDDINREDSE 193

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2055250 LURP1 "AT2G14560" [Arabidopsis thaliana (taxid:3702)]

 Score = 464 (168.4 bits), Expect = 5.0e-44, P = 5.0e-44
 Identities = 89/188 (47%), Positives = 127/188 (67%)

Query:    21 RPYPIIGPQYCVPYPVDIAIVRKFMSVTDGTFVVNDIADNLMFKVKEKLISLHKRRTVLD 80
             +P  I+G +YC P PV +AIVRK M +TDG FV+      L+FKVK+ L SLH +R +LD
Sbjct:     3 QPCVIVGSKYCSPNPVGLAIVRKVMKITDGNFVITSADGKLLFKVKDPLFSLHGKRILLD 62

Query:    81 PYDNPIVTVTKKLISAHEKHYVFRGNSTDSKDLLFTVGKSKMIQLKTTLNVYLASNNKQD 140
                  ++T+  K+++ H++  VFRG ST+   LL+TV +S MIQL   L V+LA+N ++ 
Sbjct:    63 CSGAKVLTLRGKMMTMHDRWQVFRGGSTEEGALLYTVKRSSMIQLAPKLEVFLANNVEEK 122

Query:   141 VCDFKIKGSWLERSCIFYAGESKAIVAQMQKRITAGSVMLDKDRYTVTVYPNIDYAFVVA 200
             +CDFK+KG+WL+ SC+ YAG+S  I+A M  + T       KD ++VTV  N+DYAF+ +
Sbjct:   123 ICDFKVKGAWLDDSCVVYAGDSDTIIAHMCGKQTMRGFFFGKDHFSVTVDKNVDYAFIAS 182

Query:   201 LIVILDEI 208
             LIVIL EI
Sbjct:   183 LIVILVEI 190

GO:0003674 "molecular_function" evidence=ND

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0050832 "defense response to fungus" evidence=RCA;IMP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

GO:0045088 "regulation of innate immune response" evidence=RCA

TAIR|locus:2086062 AT3G16900 "AT3G16900" [Arabidopsis thaliana (taxid:3702)]

 Score = 343 (125.8 bits), Expect = 3.3e-31, P = 3.3e-31
 Identities = 76/199 (38%), Positives = 113/199 (56%)

Query:    12 AEASPEIYTRPYPIIGPQYCVPYPVDIAIVRKFMSVTDGTFVVNDIADNLMFKVKEKLIS 71
             A+  P       P++G ++  P P+D+ I       T  T  V D   N +FKVK  L  
Sbjct:     2 AKQDPTSSNTMLPLVGSEFVRPQPLDLTI-------TGDT--VKDATGNKVFKVKTPLFG 52

Query:    72 LHKRRTVLDPYDNPIVTVTKKLISAHEKHYVFRGNSTDSKDLLFTVGKSKMIQLKTTLNV 131
             LH +R ++DP D+PIVT+  K+ S H++  V+RG+  D K  +FTV +S  +QLKT + V
Sbjct:    53 LHNKRILVDPNDSPIVTMKMKVTSKHDRWQVYRGSDLDDK--IFTVKRSSTVQLKTRVEV 110

Query:   132 YLASNN-KQDVCDFKIKGSWLERSCIFYAGESKAIVAQMQKRITAGSVMLDKDRYTVTVY 190
             +L  N  ++  CDF IKG +++R+C  Y  +S  I+AQ+ +           +R   T+Y
Sbjct:   111 FLKHNQTRESSCDFTIKGRFMKRACTIYVADSTKIIAQVYE---------GHERLVATIY 161

Query:   191 PNIDYAFVVALIVILDEIN 209
             PN+DYAF+V LI I D IN
Sbjct:   162 PNVDYAFIVTLIFIFDLIN 180

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2078506 AT3G56180 "AT3G56180" [Arabidopsis thaliana (taxid:3702)]

 Score = 271 (100.5 bits), Expect = 1.4e-23, P = 1.4e-23
 Identities = 60/189 (31%), Positives = 108/189 (57%)

Query:    25 IIGPQYCVPYPVDIAIVRKFMSVTDGTFVVNDIADNLMFKVKEKLISLHKRRTVLDPYDN 84
             ++  Q+C PYP+D+ + RK  + +   + V D + NL+ ++  +    +++R + DP   
Sbjct:    18 VVSDQFCNPYPMDLLVKRKVQNFSKDYYEVFDPSGNLLLQIDGQAWGFNRKRVMRDPAGF 77

Query:    85 PIVTVTKKLISAHEKHYVFRGNSTDSKDLLFTVGKSKMIQLKTTLNVYLASNN---KQDV 141
              I+++ +K ++   K  V  G S + +DLLFTV +S+ + LKT+++V+L  NN   K + 
Sbjct:    78 TILSMRQKGLALKNKWEVHGGESKEREDLLFTVQQSQAVSLKTSVDVFLPENNNVKKTNT 137

Query:   142 CDFKIKGSWLERSCIFYAGESKAIVAQMQKRITAGSVMLDKDRYTVTVYPNIDYAFVVAL 201
             CDF   G +   S  F   ++ A++A +    T GS    K  + V V P +DYAF++AL
Sbjct:   138 CDFHASGGYSNIS--FKVFKADALIAGVG--FTWGSFCKGKYNFKVRVNPEVDYAFIIAL 193

Query:   202 IVILDEINN 210
             +V++D+  N
Sbjct:   194 LVMVDDNEN 202

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:4515103053 AT3G10986 "AT3G10986" [Arabidopsis thaliana (taxid:3702)]

 Score = 227 (85.0 bits), Expect = 6.5e-19, P = 6.5e-19
 Identities = 53/192 (27%), Positives = 106/192 (55%)

Query:    25 IIGPQYCVPYPVDIAIVRKFMSVTDGTFVVNDIADNLMFKVKEKLISLHKRRTVLDPYDN 84
             ++G  +C PY  ++ + R+  S+    + V D+++NL+F V   + ++ ++R + D    
Sbjct:     4 VVGEMFCNPYTTELVVRRRRESLKRERYDVFDLSNNLIFTVDGGIWNIRRKRVLRDAAGI 63

Query:    85 PIVTV-TKKLISAHEKHYVFRGNSTDSKDLLFTVGKSKMIQLKTTLNVYLASNNKQ-DVC 142
             P++++ TK L+       V++G+ST+S +LLF+  +  ++  KT+L+V L  +    D+ 
Sbjct:    64 PLLSMRTKGLVPMRYNWEVYKGDSTESDNLLFSAREPNLLSFKTSLDVTLPPDQSSTDIS 123

Query:   143 ----DFKIKGSWLERSCIFYAGESKAIVAQMQKRITAGSVMLDKDRYTVTVYPNIDYAFV 198
                 DF+  G ++  S   +      ++A++    T G ++     + V V P +D+AFV
Sbjct:   124 SVEPDFQTFGRYIGSSFKLFEPIHNTLLAEVVHDFTWGGLIKGSYSFKVRVNPYVDFAFV 183

Query:   199 VALIVILDEINN 210
             VAL+VI D+ +N
Sbjct:   184 VALLVITDDTSN 195

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2093242 AT3G15810 "AT3G15810" [Arabidopsis thaliana (taxid:3702)]

 Score = 180 (68.4 bits), Expect = 6.2e-14, P = 6.2e-14
 Identities = 46/191 (24%), Positives = 95/191 (49%)

Query:    25 IIGPQYCVPYPVDIAIVRKFMSVTDGTFVVNDIADNLMFKVKEKLISLHKRRTV--LDPY 82
             ++   Y       + + +  +  T   F   D   +++F+V            +  +D  
Sbjct:    20 VVDKAYLYQEDKPLTVCKTSLFYTGDGFAAYDCRGDIIFRVDSYGPDTRDNDEIVLMDAT 79

Query:    83 DNPIVTVTKKLISAHEKHYVFRGNSTDSKDLLFTVGKSKMIQLKTTLNVYLASNNKQDVC 142
                ++TV +K  + H++   F G  ++ +  +F+V +S +I  + T+ V +     ++  
Sbjct:    80 GKCLLTVKRKRPTLHQRWEGFLGERSEGQKPIFSVRRSSIIG-RCTMEVEVYDGTGEE-- 136

Query:   143 DFKIKGSWLERSCIFYAGESKAIVAQMQKRITAGS-VMLDKDRYTVTVYPNIDYAFVVAL 201
              + I G + +RSC+ Y    K  VA++++++ A + VML +D +T+ + P  D AF + L
Sbjct:   137 -YIIDGDFSQRSCLIY-DTKKCTVAEIKRKVDASTNVMLGRDVFTLEIKPGFDGAFAMGL 194

Query:   202 IVILDEINNDD 212
             +V+LD+IN DD
Sbjct:   195 VVVLDQINGDD 205

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2016299 AT1G80120 "AT1G80120" [Arabidopsis thaliana (taxid:3702)]

 Score = 168 (64.2 bits), Expect = 1.2e-12, P = 1.2e-12
 Identities = 48/170 (28%), Positives = 91/170 (53%)

Query:    49 DGTFVVNDIADNLMFKVKEKLISLHKRRT----VLDPYDNPIVTVTKKLISAHEKHYVFR 104
             DG F V D   +L+F+V +     + R T    ++D +   ++T+ +K  S   +   + 
Sbjct:    31 DG-FTVYDCKGSLVFRV-DSYGGPNTRDTDEVVLMDAHGRCLLTLRRKRPSLRRRWEGYL 88

Query:   105 GNSTDSKDLLFTVGKSKMI-QLKTTLNVYLASNNKQDVCDFKIKGSWLERSCIFYAGESK 163
             G  +D +  +F V +S +I +   T+ VY          ++ I+GS+  R+C     E++
Sbjct:    89 GERSDGQKPIFGVRRSSIIGRNSVTVEVY----GDYQCSEYLIEGSFGARNCTVVEAETR 144

Query:   164 AIVAQMQKRITAGS-VMLDKDRYTVTVYPNIDYAFVVALIVILDEINNDD 212
               VA++++++ A + VML KD +++ V P  D AF + L+++LD+I  DD
Sbjct:   145 RKVAEIRRKVDASTNVMLGKDVFSLNVKPGFDGAFAMGLVLVLDQIYGDD 194

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2065753 AT2G30270 "AT2G30270" [Arabidopsis thaliana (taxid:3702)]

 Score = 153 (58.9 bits), Expect = 4.5e-11, P = 4.5e-11
 Identities = 44/171 (25%), Positives = 89/171 (52%)

Query:    35 PVDIAIVRKFMSVTDGTFVVNDIADNLMFKVKEKLISLHKRRTVLDPYDNPIVTVTKKLI 94
             PVD+   +K   ++ G     D +++L+F +++   SL   +++LD    P+ ++++   
Sbjct:    19 PVDLFASKKLPGLSSGDLGFADSSEHLVFILRKSSSSL---KSLLDSSGVPLFSISRLHN 75

Query:    95 SAHEKHYVFRGNSTDSKDLLFTVGKSKMIQLKTTLNVYLASNNKQDVCDFKIKGSWLERS 154
                E H   +G+    KDL+ TV ++     KT   V  A  + +++    IKG   ++S
Sbjct:    76 GVWELH---KGDVEKRKDLVLTVKRTSKRFSKTESEVSFAGESSENLV---IKGVPFQKS 129

Query:   155 CIFYAGESKAIVAQMQKRITAGSVMLDKDRYTVTVYP-NIDYAFVVALIVI 204
             C  Y+ +S  IVAQ         + + + ++ +T++P +ID++ VVA++ I
Sbjct:   130 CTIYSQDS--IVAQTSLMYKLRQIYVGRSKFRLTIFPGSIDHSLVVAMVAI 178

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

GO:0006863 "purine nucleobase transport" evidence=RCA

TAIR|locus:2064686 AT2G05910 "AT2G05910" [Arabidopsis thaliana (taxid:3702)]

 Score = 144 (55.7 bits), Expect = 4.1e-10, P = 4.1e-10
 Identities = 54/194 (27%), Positives = 95/194 (48%)

Query:    25 IIGPQYCVPYPVDIAIVRKFMSVTDGT-FVVNDIADNLMFKVKEKLISLHKRRTVLDPYD 83
             ++   YC     ++ +VR+   V +G  FVV D  + ++FK+    +   K   VL   D
Sbjct:     4 VVSKLYCSSME-EVMVVRRRPHVVNGGGFVVTDYKEKIVFKIDGCGVLGTKGELVLRDSD 62

Query:    84 -NPIVTVTKK--LISAHEKHYVFRGNSTD---SKDLLFTVG--KSKMIQLKTTLNVYLAS 135
              N ++ + KK  ++ A   H  ++G S D   S   +FT+   K     + +++ + +  
Sbjct:    63 GNDLLLIHKKGGVVQALSIHNKWKGYSYDYQGSPKPVFTLRDPKHSCFSITSSIRISVGP 122

Query:   136 NNKQDVCDFKIKGSWLERSCIFYAGESKA-IVAQMQKRITAGSVMLDKDRYTVTVYPNID 194
              N    C F +KG + +R C     +SK  ++AQ+++ I  GS    +D Y V   P++D
Sbjct:   123 GN----CYFDVKGYFPDRDCSIV--DSKGNVIAQVKEWI--GS----RDIYKVVTKPSVD 170

Query:   195 YAFVVALIVILDEI 208
              AFV  +I +LD I
Sbjct:   171 KAFVFGVIAVLDYI 184

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LZX1	LOR15_ARATH	No assigned EC number	0.5638	0.8785	0.8663	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	214
pfam04525	185	pfam04525, Tub_2, Tubby C 2	1e-49

>gnl|CDD|218129 pfam04525, Tub_2, Tubby C 2

 Score =  159 bits (404), Expect = 1e-49
 Identities = 74/186 (39%), Positives = 113/186 (60%), Gaps = 7/186 (3%)

Query: 24  PIIGPQYCVPYPVDIAIVRKFMSVTDGTFVVNDIADNLMFKVKEKLISLHKRRTVLDPYD 83
            ++  +Y  P P D+ + RK +      F V D   NL+F+V      L   R ++D   
Sbjct: 2   VVVSSEYLSPEPEDLTVWRKSLVFNGDGFTVYDSNGNLVFRVDGYAFGLSDERVLMDSSG 61

Query: 84  NPIVTVTKKLISAHEKHYVFRGNSTDSKDLLFTVGKSKMIQLKTTLNVYLASNNKQDV-- 141
           NP++T+ +K +S H++  V+RG  T+ KD LFTV +S ++QLKT+ +V+   N+   V  
Sbjct: 62  NPLLTIRRKKLSLHDRWEVYRGEGTEGKDPLFTVRRSSIVQLKTSSSVFSKRNSNVIVDD 121

Query: 142 ---CDFKIKGSWLERSCIFYAGESKAIVAQMQKRITAGSVMLDKDRYTVTVYPNIDYAFV 198
              CDF IKGS+L+RSC  Y  +S  ++A++ KR T+  V L KD YTVTV P +DYAF+
Sbjct: 122 EKNCDFDIKGSFLDRSCKIYD-DSDKLIAEV-KRQTSKGVFLGKDVYTVTVKPEVDYAFI 179

Query: 199 VALIVI 204
           +AL+V+
Sbjct: 180 MALVVV 185

The structure of this family has been solved. It comprises a 12-stranded beta barrel with a central C-terminal alpha helix. This helix is thought to be a transmembrane helix. It is structurally similar to the C-terminal domain of the Tubby protein. In plants it plays a role in defense against pathogens. Length = 185

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	214
PF04525	187	Tub_2: Tubby C 2; InterPro: IPR007612 This is a fa	100.0
COG4894	159	Uncharacterized conserved protein [Function unknow	100.0
PF03803	221	Scramblase: Scramblase ; InterPro: IPR005552 Scram	99.66
COG4894	159	Uncharacterized conserved protein [Function unknow	98.5
KOG0621	292	consensus Phospholipid scramblase [Cell wall/membr	98.18
PF04525	187	Tub_2: Tubby C 2; InterPro: IPR007612 This is a fa	98.04
PF03803	221	Scramblase: Scramblase ; InterPro: IPR005552 Scram	95.94
PF09008	114	Head_binding: Head binding; InterPro: IPR009093 Th	84.78

>PF04525 Tub_2: Tubby C 2; InterPro: IPR007612 This is a family of plant and bacterial uncharacterised proteins

Probab=100.00  E-value=3.8e-44  Score=292.39  Aligned_cols=180  Identities=34%  Similarity=0.643  Sum_probs=110.4

Q ss_pred             eeecCCCcCCcceEEEEEEeeeeecCCCeEEEcCCCCEEEEEEc-cCCCCCceEEEECCCCCcEEEEEeccccccceeEE
Q 038304           24 PIIGPQYCVPYPVDIAIVRKFMSVTDGTFVVNDIADNLMFKVKE-KLISLHKRRTVLDPYDNPIVTVTKKLISAHEKHYV  102 (214)
Q Consensus        24 ~vV~~~~~~~~~~~l~ik~k~~s~~~~~f~I~D~~G~~vf~V~g-~~~s~~~~~~l~D~~G~~L~~i~~k~~s~~~~w~v  102 (214)
                      +||+++||++++++|+||+|.+++++++|+|+|++|+++|+|+| +.+++++++.|+|++|+||++|++|.++++++|++
T Consensus         2 ~vv~~~~~~~~~~~l~v~~k~~~~~~~~f~V~D~~G~~vf~V~g~~~~s~~~~~~l~D~~G~~L~~i~~k~~~l~~~w~i   81 (187)
T PF04525_consen    2 VVVDAQYCSPQPVTLTVKKKSLSFSGDDFTVYDENGNVVFRVDGGKFFSIGKKRTLMDASGNPLFTIRRKLFSLRPTWEI   81 (187)
T ss_dssp             -SS-GGGB-SS-EEEEEE----------EEEEETTS-EEEEEE--SCTTBTTEEEEE-TTS-EEEEEE--------EEEE
T ss_pred             cEECHHHcCCCceEEEEEEEEeeecCCCEEEEcCCCCEEEEEEEecccCCCCEEEEECCCCCEEEEEEeeecccceEEEE
Confidence            46799999999999999999999988899999999999999999 89999999999999999999999999999999999


Q ss_pred             EECCCCCCCceEEEEEeeecccCCceEEEEEccCC-----CCceeeEEEEceeecceEEEEeCCCCcEEEEEEeeeecce
Q 038304          103 FRGNSTDSKDLLFTVGKSKMIQLKTTLNVYLASNN-----KQDVCDFKIKGSWLERSCIFYAGESKAIVAQMQKRITAGS  177 (214)
Q Consensus       103 ~~~~~~~~~~~l~~ikk~~~~~~k~~~~V~~~~~~-----~~~~~~~~v~G~~~~~~~~I~~~~~~~~VA~I~rk~~~~~  177 (214)
                      |.+++.+..+++|++++++....++++.+|+....     .+..++|+|+|||++++|+|++. .|+.||+|+||+..+.
T Consensus        82 ~~~~~~~~~~~i~tvkk~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~i~G~~~~~~~~I~~~-~g~~VA~i~rk~~~k~  160 (187)
T PF04525_consen   82 YRGGGSEGKKPIFTVKKKSMLQNKDSFDVFLPPKSNISIDDSEGPDFEIKGNFWDRSFTIYDS-GGRVVAEISRKYSSKK  160 (187)
T ss_dssp             EETT---GGGEEEEEE----------EEEEET--T----------SEEEES-TTTT--EEEEC-C--EEEEEEE------
T ss_pred             EECCCCccCceEEEEEEecccCCCcceeEEEecccceeecCCCCceEEEEEEecCcEEEEEEc-CCCEEEEEecccceee
Confidence            99986555578999998866667888999987432     25678999999999999999953 3899999999988888


Q ss_pred             eeeecceEEEEEeCCCCHHHHHHHHHh
Q 038304          178 VMLDKDRYTVTVYPNIDYAFVVALIVI  204 (214)
Q Consensus       178 ~~~~~dtY~v~V~pgvD~alv~alvv~  204 (214)
                      ++.|+|+|.|+|+||+|++|++|||||
T Consensus       161 ~~~~~dty~l~V~pg~D~~lv~alvvi  187 (187)
T PF04525_consen  161 WFSGRDTYTLTVAPGVDQALVVALVVI  187 (187)
T ss_dssp             ----B-SEEEEE-TTSBHHHHHHHHHH
T ss_pred             EEecCcEEEEEEcCCCCHHHheeEEeC
Confidence            899999999999999999999999986

; PDB: 1ZXU_A 2Q4M_A.

>COG4894 Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=4.4e-34  Score=218.29  Aligned_cols=152  Identities=21%  Similarity=0.333  Sum_probs=138.5

Q ss_pred             EEEEEEeeeeecCCCeEEEcCCCCEEEEEEccCCCCCceEEEECCCCCcEEEEEeccccccceeEEEECCCCCCCceEEE
Q 038304           37 DIAIVRKFMSVTDGTFVVNDIADNLMFKVKEKLISLHKRRTVLDPYDNPIVTVTKKLISAHEKHYVFRGNSTDSKDLLFT  116 (214)
Q Consensus        37 ~l~ik~k~~s~~~~~f~I~D~~G~~vf~V~g~~~s~~~~~~l~D~~G~~L~~i~~k~~s~~~~w~v~~~~~~~~~~~l~~  116 (214)
                      +|.++||+.++++ +|.|+|.+|+.+|+|+|+.++++..+.+.|++|.+|..|++|+++++++|+|-.|+    + .+|.
T Consensus         7 tl~mkQk~~~~gd-~f~I~d~dgE~af~VeGs~f~i~dtlti~Da~G~~l~~i~~kll~l~~~yeI~d~~----g-~~~~   80 (159)
T COG4894           7 TLFMKQKMFSFGD-AFHIYDRDGEEAFKVEGSFFSIGDTLTITDASGKTLVSIEQKLLSLLPRYEISDGG----G-TVCE   80 (159)
T ss_pred             hHhhhhhhhhccc-ceEEECCCCcEEEEEeeeEEeeCceEEEEecCCCChHHHHHHHhhccceeEEEcCC----C-CEEE
Confidence            6889999999986 99999999999999999999999999999999999999999999999999998877    2 3888


Q ss_pred             EEeeecccCCceEEEEEccCCCCceeeEEEEceeecceEEEEeCCCCcEEEEEEeeeecceeeeecceEEEEEeCCCCHH
Q 038304          117 VGKSKMIQLKTTLNVYLASNNKQDVCDFKIKGSWLERSCIFYAGESKAIVAQMQKRITAGSVMLDKDRYTVTVYPNIDYA  196 (214)
Q Consensus       117 ikk~~~~~~k~~~~V~~~~~~~~~~~~~~v~G~~~~~~~~I~~~~~~~~VA~I~rk~~~~~~~~~~dtY~v~V~pgvD~a  196 (214)
                      ++|+ ++++++++++..        .+|+++||+|+.+|++.+|  ++.+|+|+|||     ++|+|||.|+|+|+.|.+
T Consensus        81 vrKK-~tf~Rdk~e~d~--------~~~eihGNi~d~efkl~dg--~~~~aeVsKkw-----f~~rdTY~l~vapde~a~  144 (159)
T COG4894          81 VRKK-VTFSRDKFEIDG--------LNWEIHGNIWDDEFKLTDG--ENVRAEVSKKW-----FSWRDTYHLQVAPDEDAL  144 (159)
T ss_pred             EEEE-EEEEeeeEEEcC--------CCeEEecceeceEEEEecC--Cceehhheeee-----EeccceEEEEEcCchhhH
Confidence            8755 666677777643        3599999999999999999  67999999996     999999999999999999


Q ss_pred             HHHHHHHhhhcccc
Q 038304          197 FVVALIVILDEINN  210 (214)
Q Consensus       197 lv~alvv~lD~i~~  210 (214)
                      +|+++|||+|++.+
T Consensus       145 lii~i~VaLD~v~~  158 (159)
T COG4894         145 LIIAIAVALDMVLY  158 (159)
T ss_pred             HHHHHHHHHHHHhc
Confidence            99999999999875

>PF03803 Scramblase: Scramblase ; InterPro: IPR005552 Scramblase is palmitoylated and contains a potential protein kinase C phosphorylation site

Probab=99.66  E-value=2e-14  Score=119.87  Aligned_cols=165  Identities=13%  Similarity=0.232  Sum_probs=129.2

Q ss_pred             EEEEEEeeeee-------cCCCeEEEcCCCCEEEEEEccCC---------CCCceEEEECCCCCcEEEEEeccccc----
Q 038304           37 DIAIVRKFMSV-------TDGTFVVNDIADNLMFKVKEKLI---------SLHKRRTVLDPYDNPIVTVTKKLISA----   96 (214)
Q Consensus        37 ~l~ik~k~~s~-------~~~~f~I~D~~G~~vf~V~g~~~---------s~~~~~~l~D~~G~~L~~i~~k~~s~----   96 (214)
                      .++|+|+...+       ..+.|.|+|.+|+.+|.+....-         ..+-+..++|..|++++++++..-..    
T Consensus        23 ~l~I~Q~~e~~e~~~~~e~~N~Y~I~n~~g~~i~~~~E~s~~~~R~~~~~~R~f~~~i~D~~g~~vl~i~Rp~~c~~C~~  102 (221)
T PF03803_consen   23 QLLIKQQIEPLEIFTGFETPNRYDIKNPNGQQIYYAVEESDCCSRQCCGSHRPFKMHIYDNYGREVLTIERPFKCCSCCP  102 (221)
T ss_pred             EEEEEEEEEEeceecccccCceEEEECCCCCEEEEEEEeCcceeeeecCCCCCEEEEEEecCCCEEEEEEcCCcceeccc
Confidence            67777776532       35799999999999999876521         12355788999999999999876432    


Q ss_pred             --cceeEEEECCCCCCCceEEEEEeeecccCCceEEEEEccCCCCceeeEEEEce------eecceEEEEeCCCCcEEEE
Q 038304           97 --HEKHYVFRGNSTDSKDLLFTVGKSKMIQLKTTLNVYLASNNKQDVCDFKIKGS------WLERSCIFYAGESKAIVAQ  168 (214)
Q Consensus        97 --~~~w~v~~~~~~~~~~~l~~ikk~~~~~~k~~~~V~~~~~~~~~~~~~~v~G~------~~~~~~~I~~~~~~~~VA~  168 (214)
                        ..+.+|+.+.    ++.|.+|+.+ +..++++++|+-+++    +.-+.|+|.      +.+..|.|++.+ |+.||+
T Consensus       103 ~~~~~~~V~~p~----g~~iG~I~q~-~~~~~~~f~I~d~~~----~~~~~I~gp~~~~~~~~~~~F~I~~~~-~~~vg~  172 (221)
T PF03803_consen  103 CCLQEMEVESPP----GNLIGSIRQP-FSCCRPNFDIFDANG----NPIFTIKGPCCCCSCCCDWEFEIKDPN-GQEVGS  172 (221)
T ss_pred             ccceeEEEecCC----CcEEEEEEEc-CcccceEEEEEECCC----ceEEEEeCCcceeccccceeeeeeccc-CcEEEE
Confidence              2566665443    6899999954 676799999987543    467888887      457889999965 799999


Q ss_pred             EEeeee--cceeeeecceEEEEEeCCCCH---HHHHHHHHhhhccccC
Q 038304          169 MQKRIT--AGSVMLDKDRYTVTVYPNIDY---AFVVALIVILDEINND  211 (214)
Q Consensus       169 I~rk~~--~~~~~~~~dtY~v~V~pgvD~---alv~alvv~lD~i~~~  211 (214)
                      |+|+|+  .++.+...|.|.|+..+..|.   |+++|.++.||.+.-+
T Consensus       173 I~k~w~G~~~e~~t~~d~f~i~Fp~~l~~~~Kalll~a~~liD~~~Fe  220 (221)
T PF03803_consen  173 ITKKWSGFCRELFTDADNFVIEFPPDLDVEQKALLLGAAFLIDYMYFE  220 (221)
T ss_pred             EEEecCCcchhhccccceEEEEcCCCCCHHHHHHHHHHHHHhhhhhhc
Confidence            999996  356788899999999998885   8999999999988755

Scramblase exhibits Ca2+-activated phospholipid scrambling activity in vitro. There are also possible SH3 and WW binding motifs. Scramblase is involved in the redistribution of phospholipids after cell activation or injury [].

>COG4894 Uncharacterized conserved protein [Function unknown]

Probab=98.50  E-value=3.5e-07  Score=70.76  Aligned_cols=70  Identities=21%  Similarity=0.304  Sum_probs=64.3

Q ss_pred             cCCcceEEEEEEeeeeecCCCeEEEcCCCCEEEEEEccCCCCCceEEEECCCCCcEEEEEeccccccceeEE
Q 038304           31 CVPYPVDIAIVRKFMSVTDGTFVVNDIADNLMFKVKEKLISLHKRRTVLDPYDNPIVTVTKKLISAHEKHYV  102 (214)
Q Consensus        31 ~~~~~~~l~ik~k~~s~~~~~f~I~D~~G~~vf~V~g~~~s~~~~~~l~D~~G~~L~~i~~k~~s~~~~w~v  102 (214)
                      -..++..+.|.-+.+++.+ .|+|+|+.|..++.++.+.+++..+..+.|++|+ ++.+++|...++++|++
T Consensus        25 d~dgE~af~VeGs~f~i~d-tlti~Da~G~~l~~i~~kll~l~~~yeI~d~~g~-~~~vrKK~tf~Rdk~e~   94 (159)
T COG4894          25 DRDGEEAFKVEGSFFSIGD-TLTITDASGKTLVSIEQKLLSLLPRYEISDGGGT-VCEVRKKVTFSRDKFEI   94 (159)
T ss_pred             CCCCcEEEEEeeeEEeeCc-eEEEEecCCCChHHHHHHHhhccceeEEEcCCCC-EEEEEEEEEEEeeeEEE
Confidence            3578899999999999987 7999999999999999999999999999999999 88899998767888887

>KOG0621 consensus Phospholipid scramblase [Cell wall/membrane/envelope biogenesis]

Probab=98.18  E-value=0.00011  Score=63.79  Aligned_cols=177  Identities=12%  Similarity=0.196  Sum_probs=114.9

Q ss_pred             CCCcCCcceEEEEEEe--e---eee-cCCCeEEEcCCCCEEEEEEccC---------CCCCceEEEECCCCCcEEEEEec
Q 038304           28 PQYCVPYPVDIAIVRK--F---MSV-TDGTFVVNDIADNLMFKVKEKL---------ISLHKRRTVLDPYDNPIVTVTKK   92 (214)
Q Consensus        28 ~~~~~~~~~~l~ik~k--~---~s~-~~~~f~I~D~~G~~vf~V~g~~---------~s~~~~~~l~D~~G~~L~~i~~k   92 (214)
                      -+|.+..+..++.++.  +   ..| +.+.|.|.|.+|+.+|.+-...         ..-+-...++|.-|+++++++++
T Consensus        71 l~~L~~~~~~~V~q~~E~~ei~tG~et~NRY~v~~~~g~~v~~~~E~S~~~~Rq~~g~~RpF~~~i~D~~g~eVl~~~R~  150 (292)
T KOG0621|consen   71 LEYLAHLDSLMVVQQIEPLEIFTGFETANRYVVHDMYGQPLYYAMERSNVFARQYLGTHRPFAMRIMDNFGQEVLTCKRP  150 (292)
T ss_pred             hheeecCCceEEEEeeeehhhhccCccCcEEEEEcCCcChhHHHHhhchHHHHHhhccCCcceeEeecccCcEEEEEecc
Confidence            3455555544444333  1   244 5789999999999988554421         11235678999999999999998


Q ss_pred             cccccc--------eeEEEECCCCCCCceEEEEEeeecccCCceEEEEEccCCCCceeeEEEEce-------eecceEEE
Q 038304           93 LISAHE--------KHYVFRGNSTDSKDLLFTVGKSKMIQLKTTLNVYLASNNKQDVCDFKIKGS-------WLERSCIF  157 (214)
Q Consensus        93 ~~s~~~--------~w~v~~~~~~~~~~~l~~ikk~~~~~~k~~~~V~~~~~~~~~~~~~~v~G~-------~~~~~~~I  157 (214)
                      ..+...        ..++-    ....-.+.++... .....++++|.-.    +....+.|+|-       +-+..+.+
T Consensus       151 ~~c~~~~c~~~~~~~~~v~----~p~~~~lG~v~q~-~~~~~~~f~i~~~----~~~~v~~v~gp~~~~~~~~~d~~f~~  221 (292)
T KOG0621|consen  151 FPCCSSACALCLAQEIEIQ----SPPMGLLGKVLQT-WGCVNPNFHLWDR----DGNLVFLVEGPRCCTFACCDDTVFFP  221 (292)
T ss_pred             ccccccccccccccEEEEE----cCCCceEEEEEEe-eccccceEEEEcc----cceeEEEEEcCceeEEEeecCcceeE
Confidence            754432        11111    1123455555532 3234566666432    23345666666       33444555


Q ss_pred             EeCCCCcEEEEEEeeee--cceeeeecceEEEEEeCCCCH---HHHHHHHHhhhccccCCC
Q 038304          158 YAGESKAIVAQMQKRIT--AGSVMLDKDRYTVTVYPNIDY---AFVVALIVILDEINNDDD  213 (214)
Q Consensus       158 ~~~~~~~~VA~I~rk~~--~~~~~~~~dtY~v~V~pgvD~---alv~alvv~lD~i~~~~~  213 (214)
                      ...+.++.|++|.|+|.  +++.+.+.|+|.|.-.-..|.   |+++|.+.-||.+.-+++
T Consensus       222 ~~~d~~~~vg~I~k~w~g~~rE~fTDad~f~v~FPldLdvk~kavllga~flID~~~Fe~~  282 (292)
T KOG0621|consen  222 KTTDNGRIVGSISRKWAGLVREAFTDADTFVVHFPLDLDVKLKALLLGSTFLIDYMSFESR  282 (292)
T ss_pred             EEcCCCeEEEEEeecccchhhhheeccceeeEecCCcCCHHHHhhhhhheeeEEEEEEecC
Confidence            55555899999999996  568899999999998877775   789999999997766543

>PF04525 Tub_2: Tubby C 2; InterPro: IPR007612 This is a family of plant and bacterial uncharacterised proteins

Probab=98.04  E-value=5.1e-05  Score=61.71  Aligned_cols=87  Identities=22%  Similarity=0.316  Sum_probs=51.4

Q ss_pred             CCCEEEEEEccCC-CCCceEEEECCCCCcEEEEEe-ccccccceeEEEECCCCCCCceEEEEEeeecccCCceEEEEEcc
Q 038304           58 ADNLMFKVKEKLI-SLHKRRTVLDPYDNPIVTVTK-KLISAHEKHYVFRGNSTDSKDLLFTVGKSKMIQLKTTLNVYLAS  135 (214)
Q Consensus        58 ~G~~vf~V~g~~~-s~~~~~~l~D~~G~~L~~i~~-k~~s~~~~w~v~~~~~~~~~~~l~~ikk~~~~~~k~~~~V~~~~  135 (214)
                      .....++|.-+.+ ..+..+.|+|.+|+++|.+.. +.++++.+..++...    +++|++++++ .+.+.++|+++..+
T Consensus        11 ~~~~~l~v~~k~~~~~~~~f~V~D~~G~~vf~V~g~~~~s~~~~~~l~D~~----G~~L~~i~~k-~~~l~~~w~i~~~~   85 (187)
T PF04525_consen   11 PQPVTLTVKKKSLSFSGDDFTVYDENGNVVFRVDGGKFFSIGKKRTLMDAS----GNPLFTIRRK-LFSLRPTWEIYRGG   85 (187)
T ss_dssp             SS-EEEEEE----------EEEEETTS-EEEEEE--SCTTBTTEEEEE-TT----S-EEEEEE---------EEEEEETT
T ss_pred             CCceEEEEEEEEeeecCCCEEEEcCCCCEEEEEEEecccCCCCEEEEECCC----CCEEEEEEee-ecccceEEEEEECC
Confidence            5677888866554 458999999999999999999 899999999998765    6899999975 55578999999977


Q ss_pred             CCCCceeeEEEEce
Q 038304          136 NNKQDVCDFKIKGS  149 (214)
Q Consensus       136 ~~~~~~~~~~v~G~  149 (214)
                      ...++.+-++++-.
T Consensus        86 ~~~~~~~i~tvkk~   99 (187)
T PF04525_consen   86 GSEGKKPIFTVKKK   99 (187)
T ss_dssp             ---GGGEEEEEE--
T ss_pred             CCccCceEEEEEEe
Confidence            53334456777665

; PDB: 1ZXU_A 2Q4M_A.

>PF03803 Scramblase: Scramblase ; InterPro: IPR005552 Scramblase is palmitoylated and contains a potential protein kinase C phosphorylation site

Probab=95.94  E-value=0.061  Score=44.57  Aligned_cols=64  Identities=14%  Similarity=0.229  Sum_probs=53.0

Q ss_pred             eEEEcCCCCEEEEEEccCCCC-------CceEEEECCCCCcEEEEEeccccccceeEEEECCCCCCCceEEEEEee
Q 038304           52 FVVNDIADNLMFKVKEKLISL-------HKRRTVLDPYDNPIVTVTKKLISAHEKHYVFRGNSTDSKDLLFTVGKS  120 (214)
Q Consensus        52 f~I~D~~G~~vf~V~g~~~s~-------~~~~~l~D~~G~~L~~i~~k~~s~~~~w~v~~~~~~~~~~~l~~ikk~  120 (214)
                      ..|+|.+|+.|++++-.. ..       ..+..+.++.|++|.+|+++...+.++|+|+.++    ++.+++|+.+
T Consensus        78 ~~i~D~~g~~vl~i~Rp~-~c~~C~~~~~~~~~V~~p~g~~iG~I~q~~~~~~~~f~I~d~~----~~~~~~I~gp  148 (221)
T PF03803_consen   78 MHIYDNYGREVLTIERPF-KCCSCCPCCLQEMEVESPPGNLIGSIRQPFSCCRPNFDIFDAN----GNPIFTIKGP  148 (221)
T ss_pred             EEEEecCCCEEEEEEcCC-cceecccccceeEEEecCCCcEEEEEEEcCcccceEEEEEECC----CceEEEEeCC
Confidence            468999999999999743 32       3577788999999999999887789999999876    4789999855

Scramblase exhibits Ca2+-activated phospholipid scrambling activity in vitro. There are also possible SH3 and WW binding motifs. Scramblase is involved in the redistribution of phospholipids after cell activation or injury [].

>PF09008 Head_binding: Head binding; InterPro: IPR009093 This entry represents the N-terminal domain of the Bacteriophage P22, Gp9, tailspike protein (TSP)

Probab=84.78  E-value=3.5  Score=30.64  Aligned_cols=65  Identities=14%  Similarity=0.121  Sum_probs=35.9

Q ss_pred             CCCCCCceeeecCCCcCCcceEEEEEEeeeeecCCCeEEEcCCCCEEEEEEccCCCCCceEEEECCCCCcEEEEE
Q 038304           16 PEIYTRPYPIIGPQYCVPYPVDIAIVRKFMSVTDGTFVVNDIADNLMFKVKEKLISLHKRRTVLDPYDNPIVTVT   90 (214)
Q Consensus        16 ~~~~~~p~~vV~~~~~~~~~~~l~ik~k~~s~~~~~f~I~D~~G~~vf~V~g~~~s~~~~~~l~D~~G~~L~~i~   90 (214)
                      |+.+...+.|    |..++.-.+..-...+.+..++|.+++  |+...-|...    ++...++|++|..+|.+-
T Consensus        40 P~~p~NqI~V----yl~ne~G~~~~i~QPi~iN~gg~~~y~--gq~a~~vt~~----~hSMAv~d~~g~q~Fy~p  104 (114)
T PF09008_consen   40 PTNPGNQIPV----YLENEDGSHVQIAQPIIINKGGFPVYN--GQIAKFVTVP----GHSMAVYDANGQQQFYFP  104 (114)
T ss_dssp             TTSGGGB--E----EEE-TTS-EEEE-SSEEE-TTS-EEET--TEE--EEESS----SEEEEEE-TTS-EEEEES
T ss_pred             CCCCCCcceE----EEEcCCCCEeeccCCEEEccCCceEEc--cceeEEEEcc----CceEEEEeCCCcEEEeec
Confidence            4455555665    556555455555567788667999995  4455555544    345899999999999863

The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. The tailspike protein of Salmonella bacteriophage P22 is a viral adhesion protein that mediates attachment of the viral protein to host cell-surface lipopolysaccharide. The tailspike protein displays both receptor binding and destroying properties, inactivating the receptor by endoglycosidase activity. The N-terminal, head-binding domain mediates the non-covalent attachment of the six homotrimeric tailspike molecules to the DNA injection apparatus []. The N-terminal domain of the P22 tailspike protein shows significant sequence similarity to the N-terminal domain of the Shigella phage Sf6 tailspike protein [].; GO: 0009405 pathogenesis; PDB: 2XC1_C 1LKT_D 2VFQ_A 2VFO_A 2VFN_A 2VFP_A 2VKY_B 2VFM_A 2VNL_A 2VBK_A ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	214
1zxu_A	217	X-Ray Structure Of Protein From Arabidopsis Thalian		3e-62

>pdb|1ZXU|A Chain A, X-Ray Structure Of Protein From Arabidopsis Thaliana At5g01750 Length = 217

Iteration: 1
 Score =  234 bits (597), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 103/188 (54%), Positives = 141/188 (75%)
Query: 25  IIGPQYCVPYPVDIAIVRKFMSVTDGTFVVNDIADNLMFKVKEKLISLHKRRTVLDPYDN 84
           ++ P+YC PYP+D AIVRK  S+TDG FV+ D+  NL+FKVKE +  LH +R +LD    
Sbjct: 27  VVDPKYCAPYPIDXAIVRKXXSLTDGNFVITDVNGNLLFKVKEPVFGLHDKRVLLDGSGT 86
Query: 85  PIVTVTKKLISAHEKHYVFRGNSTDSKDLLFTVGKSKMIQLKTTLNVYLASNNKQDVCDF 144
           P+VT+ +K +S H++  VFRG STD +DLL+TV +S  +QLKT L+V+L  N  +  CDF
Sbjct: 87  PVVTLREKXVSXHDRWQVFRGGSTDQRDLLYTVKRSSXLQLKTKLDVFLGHNKDEKRCDF 146
Query: 145 KIKGSWLERSCIFYAGESKAIVAQMQKRITAGSVMLDKDRYTVTVYPNIDYAFVVALIVI 204
           ++KGSWLERSC+ YAGES AIVAQ  ++ T  SV L KD ++VTVYPN+DYAF+ +L+VI
Sbjct: 147 RVKGSWLERSCVVYAGESDAIVAQXHRKHTVQSVFLGKDNFSVTVYPNVDYAFIASLVVI 206
Query: 205 LDEINNDD 212
           LD++N +D
Sbjct: 207 LDDVNRED 214

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	214
1zxu_A	217	AT5G01750 protein; PFAM PF01167, TULP, structural	1e-59

>1zxu_A AT5G01750 protein; PFAM PF01167, TULP, structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 1.70A {Arabidopsis thaliana} SCOP: d.23.1.2 PDB: 2q4m_A Length = 217

 Score =  185 bits (470), Expect = 1e-59
 Identities = 108/212 (50%), Positives = 148/212 (69%), Gaps = 4/212 (1%)

Query: 1   MGQSNPHQPIFAEASPEIYTRPYPIIGPQYCVPYPVDIAIVRKFMSVTDGTFVVNDIADN 60
                   P  A            ++ P+YC PYP+D+AIVRK MS+TDG FV+ D+  N
Sbjct: 7   YAYPQGSGPSGAPTPQ----AGGVVVDPKYCAPYPIDMAIVRKMMSLTDGNFVITDVNGN 62

Query: 61  LMFKVKEKLISLHKRRTVLDPYDNPIVTVTKKLISAHEKHYVFRGNSTDSKDLLFTVGKS 120
           L+FKVKE +  LH +R +LD    P+VT+ +K++S H++  VFRG STD +DLL+TV +S
Sbjct: 63  LLFKVKEPVFGLHDKRVLLDGSGTPVVTLREKMVSMHDRWQVFRGGSTDQRDLLYTVKRS 122

Query: 121 KMIQLKTTLNVYLASNNKQDVCDFKIKGSWLERSCIFYAGESKAIVAQMQKRITAGSVML 180
            M+QLKT L+V+L  N  +  CDF++KGSWLERSC+ YAGES AIVAQM ++ T  SV L
Sbjct: 123 SMLQLKTKLDVFLGHNKDEKRCDFRVKGSWLERSCVVYAGESDAIVAQMHRKHTVQSVFL 182

Query: 181 DKDRYTVTVYPNIDYAFVVALIVILDEINNDD 212
            KD ++VTVYPN+DYAF+ +L+VILD++N +D
Sbjct: 183 GKDNFSVTVYPNVDYAFIASLVVILDDVNRED 214

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	214
1zxu_A	217	AT5G01750 protein; PFAM PF01167, TULP, structural	100.0
1zxu_A	217	AT5G01750 protein; PFAM PF01167, TULP, structural	98.09

>1zxu_A AT5G01750 protein; PFAM PF01167, TULP, structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 1.70A {Arabidopsis thaliana} SCOP: d.23.1.2 PDB: 2q4m_A

Probab=100.00  E-value=1.2e-46  Score=312.43  Aligned_cols=199  Identities=53%  Similarity=0.972  Sum_probs=152.0

Q ss_pred             CCCCCCCceeeecCCCcCCcceEEEEEEeeeeecCCCeEEEcCCCCEEEEEEccCCCCCceEEEECCCCCcEEEEEeccc
Q 038304           15 SPEIYTRPYPIIGPQYCVPYPVDIAIVRKFMSVTDGTFVVNDIADNLMFKVKEKLISLHKRRTVLDPYDNPIVTVTKKLI   94 (214)
Q Consensus        15 ~~~~~~~p~~vV~~~~~~~~~~~l~ik~k~~s~~~~~f~I~D~~G~~vf~V~g~~~s~~~~~~l~D~~G~~L~~i~~k~~   94 (214)
                      .++|+++|++||+++||++++++|+||||.+++++++|+|+|++|+++|+|+++.++++.++.|+|++|++|++|++|.+
T Consensus        17 ~~~~~~~~~~vv~~~~~~~~~~~l~vkqk~~~~~~~~f~V~D~~G~~vf~V~~~~~~~~~~~~l~D~~G~~l~~i~rk~~   96 (217)
T 1zxu_A           17 GAPTPQAGGVVVDPKYCAPYPIDMAIVRKMMSLTDGNFVITDVNGNLLFKVKEPVFGLHDKRVLLDGSGTPVVTLREKMV   96 (217)
T ss_dssp             -------CCCSSCGGGBCSSCEEEEEECC-----CCCEEEEETTSCEEEEEECSSTTCCSEEEEECTTSCEEEEEEC---
T ss_pred             CCCCCCCcEEEECccccCCCCcEEEEEEEEeEeeCCCEEEEeCCCCEEEEEEccccCCCCEEEEECCCCCEEEEEEcccc
Confidence            45667789999999999999999999999999998899999999999999999988999999999999999999999999


Q ss_pred             cccceeEEEECCCCCCCceEEEEEeeecccCCceEEEEEccCCCCceeeEEEEceeecceEEEEeCCCCcEEEEEEeeee
Q 038304           95 SAHEKHYVFRGNSTDSKDLLFTVGKSKMIQLKTTLNVYLASNNKQDVCDFKIKGSWLERSCIFYAGESKAIVAQMQKRIT  174 (214)
Q Consensus        95 s~~~~w~v~~~~~~~~~~~l~~ikk~~~~~~k~~~~V~~~~~~~~~~~~~~v~G~~~~~~~~I~~~~~~~~VA~I~rk~~  174 (214)
                      +++++|++|.+++.+.+++++++++++.+.++++++|++.++..++.+.|+|+|+|++++|+|+++++|+.||+|+|+|+
T Consensus        97 ~~~~~~~v~~~~~~~~~~~i~~vrk~~~~~~~~~~~V~~~~~~~~~~~~~~I~G~~~~~~f~I~~~~~~~~Va~I~kk~~  176 (217)
T 1zxu_A           97 SMHDRWQVFRGGSTDQRDLLYTVKRSSMLQLKTKLDVFLGHNKDEKRCDFRVKGSWLERSCVVYAGESDAIVAQMHRKHT  176 (217)
T ss_dssp             ---CEEEEEETTCCCGGGEEEEEEC-------CCEEEEETTCCC-CCCSEEEESCTTTTCCEEEETTTCCEEEEEEEC--
T ss_pred             ccCcEEEEEcCCCCCCCcEEEEEEEeccccCCCeEEEEECCCCCCCceEEEEEEeEeCCEEEEEECCCCEEEEEEEeeee
Confidence            99999999998755445689999977534479999999987554456799999999999999999865799999999998


Q ss_pred             cceeeeecceEEEEEeCCCCHHHHHHHHHhhhccccCCC
Q 038304          175 AGSVMLDKDRYTVTVYPNIDYAFVVALIVILDEINNDDD  213 (214)
Q Consensus       175 ~~~~~~~~dtY~v~V~pgvD~alv~alvv~lD~i~~~~~  213 (214)
                      +++++.++|+|.|+|.||+|.+|+||+|++||+++.+++
T Consensus       177 ~~~~~~~~D~y~l~V~p~~D~aliialvv~iD~~~~~~~  215 (217)
T 1zxu_A          177 VQSVFLGKDNFSVTVYPNVDYAFIASLVVILDDVNREDR  215 (217)
T ss_dssp             ------CBCSEEEEECTTSBHHHHHHHHHHHHHHHC---
T ss_pred             ccccccCCcEEEEEECCCCCHHHHHHHHHHHHHhhhhcc
Confidence            888899999999999999999999999999999998875

>1zxu_A AT5G01750 protein; PFAM PF01167, TULP, structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 1.70A {Arabidopsis thaliana} SCOP: d.23.1.2 PDB: 2q4m_A

Probab=98.09  E-value=4.3e-05  Score=62.39  Aligned_cols=99  Identities=17%  Similarity=0.292  Sum_probs=67.0

Q ss_pred             CCCCEEEEEEccCCCCCc-eEEEECCCCCcEEEEEeccccccceeEEEECCCCCCCceEEEEEeeecccCCceEEEEEcc
Q 038304           57 IADNLMFKVKEKLISLHK-RRTVLDPYDNPIVTVTKKLISAHEKHYVFRGNSTDSKDLLFTVGKSKMIQLKTTLNVYLAS  135 (214)
Q Consensus        57 ~~G~~vf~V~g~~~s~~~-~~~l~D~~G~~L~~i~~k~~s~~~~w~v~~~~~~~~~~~l~~ikk~~~~~~k~~~~V~~~~  135 (214)
                      +.+...|.|+.+.+++.. +..|+|.+|+.++.+..+.+++..++.++...    ++++++++++ .+.+.++|+|+..+
T Consensus        34 ~~~~~~l~vkqk~~~~~~~~f~V~D~~G~~vf~V~~~~~~~~~~~~l~D~~----G~~l~~i~rk-~~~~~~~~~v~~~~  108 (217)
T 1zxu_A           34 APYPIDMAIVRKMMSLTDGNFVITDVNGNLLFKVKEPVFGLHDKRVLLDGS----GTPVVTLREK-MVSMHDRWQVFRGG  108 (217)
T ss_dssp             CSSCEEEEEECC-----CCCEEEEETTSCEEEEEECSSTTCCSEEEEECTT----SCEEEEEEC-------CEEEEEETT
T ss_pred             CCCCcEEEEEEEEeEeeCCCEEEEeCCCCEEEEEEccccCCCCEEEEECCC----CCEEEEEEcc-ccccCcEEEEEcCC
Confidence            468999999999888876 99999999999999999988888888888654    6899999975 44568999998765


Q ss_pred             CCCCceeeEEEEce--e-ecceEEEEeC
Q 038304          136 NNKQDVCDFKIKGS--W-LERSCIFYAG  160 (214)
Q Consensus       136 ~~~~~~~~~~v~G~--~-~~~~~~I~~~  160 (214)
                      ...+..+-++|+-.  | +...|.|..+
T Consensus       109 ~~~~~~~i~~vrk~~~~~~~~~~~V~~~  136 (217)
T 1zxu_A          109 STDQRDLLYTVKRSSMLQLKTKLDVFLG  136 (217)
T ss_dssp             CCCGGGEEEEEEC-------CCEEEEET
T ss_pred             CCCCCcEEEEEEEeccccCCCeEEEEEC
Confidence            32122345666544  2 3456788765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	214
d2q4ma1	189	d.23.1.2 (A:24-212) Hypothetical protein At5g01750	5e-60

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	214
d2q4ma1	189	Hypothetical protein At5g01750 {Thale cress (Arabi	100.0
d2q4ma1	189	Hypothetical protein At5g01750 {Thale cress (Arabi	98.09