Citrus Sinensis ID: 038309

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------14
Protein Sequence
SNRRSVTTAGGATHILPPPVGVKVGALAIFTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAALSGIVALTLLPSTTADVPPPITEAGTATANQTNKL
Secondary Structure (PSIPRED)
cccccccccccccccccccccEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHcccccccccccHHHHHHHHHHHHHHcccEEEEEHcHHHHHHHHHccccccHHHHHHHHHHHEEccHEEEEEccccHHHHHccccHHHHHHHHHHHHHHHHHHHHHcccccccccccEEEccccHHcccccc
Coil and Loop (DISEMBL)
snrrsvttaggathilpppvgvkvGALAIFTVlgipqaitfsvpFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLlsgpfdavcgggnmpAFMVGAVAAALSGIVALtllpsttadvpppiteagtatanqtnkl
Flexible Loop (DISEMBL)
snrrsvttaggathilpppvgVKVGALAIFTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAALSGIVALTLLPSTtadvpppiteagtatanqtnkl
Low Complexity Region (SEG)
SNRRSVTTAGGATHILPPPVGVKVGALAIFTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAALSGIVALTLLPSTTADVPPPITEAGTATANQTNKL
Disordered region (IsUnstruct)
***********ATHILPPPVGVKVGALAIFTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAALSGIVALTLLPS***********************
Disordered Region (DISOPRED)
*********GGATHILPPPVGVKVGALAIFTVLGIPQAITFSVPFAMASIFSR**AA*QGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAALSGIVALTLL*************************
Disordered Region (DISEMBL)
*********GGATHILPPPVGVKVGALAIFTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAALSGIVALTLLPSTTADVPPPITEAGTATANQTNKL
Disordered Region (DISPRO)
**********GATHILPPPVGVKVGALAIFTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAALSGIVALTLLPSTT***PPPITEAG**********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
SNRRSVTTAGGATHILPPPVGVKVGALAIFTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAALSGIVALTLLPSTTADVPPPITEAGTATANQTNKL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	139	2.2.26 [Sep-21-2011]
Q39231	512	Sucrose transport protein	yes	no	0.791	0.214	0.660	8e-34
Q03411	525	Sucrose transport protein	N/A	no	0.748	0.198	0.697	3e-33
Q9C8X2	512	Sucrose transport protein	no	no	0.755	0.205	0.657	1e-32
Q39232	513	Sucrose transport protein	no	no	0.805	0.218	0.678	2e-29
Q9ZVK6	492	Sucrose transport protein	no	no	0.705	0.199	0.653	3e-25
Q9FG00	491	Sucrose transport protein	no	no	0.705	0.199	0.642	2e-24
Q6A329	492	Putative sucrose transpor	no	no	0.705	0.199	0.632	3e-24
Q67YF8	491	Sucrose transport protein	no	no	0.705	0.199	0.642	7e-24
O80605	594	Sucrose transport protein	no	no	0.784	0.183	0.467	5e-22
Q69JW3	535	Sucrose transport protein	yes	no	0.719	0.186	0.485	1e-19

>sp|Q39231|SUC2_ARATH Sucrose transport protein SUC2 OS=Arabidopsis thaliana GN=SUC2 PE=1 SV=2

 Score =  142 bits (357), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 76/115 (66%), Positives = 92/115 (80%), Gaps = 5/115 (4%)

Query: 18  PPVGVKVGALAIFTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLV 77
           PP  V  GAL +F +LGIPQAITFS+PFA+ASIFS  S AGQGLSLGVLNLAIVVPQM++
Sbjct: 399 PPGNVTAGALTLFAILGIPQAITFSIPFALASIFSTNSGAGQGLSLGVLNLAIVVPQMVI 458

Query: 78  SLLSGPFDAVCGGGNMPAFMVGAVAAALSGIVALTLLPSTTADVPPPITEAGTAT 132
           S+  GPFD + GGGN+PAF++GA+AAA+SG++ALT+LPS     PPP   A  AT
Sbjct: 459 SVGGGPFDELFGGGNIPAFVLGAIAAAVSGVLALTVLPS-----PPPDAPAFKAT 508

Responsible for the transport of sucrose into the cell, with the concomitant uptake of protons (symport system). Can also transport other glucosides such as maltose, arbutin (hydroquinone-beta-D-glucoside), salicin (2-(hydroxymethyl)phenyl-beta-D-glucoside), alpha-phenylglucoside, beta-phenylglucoside, alpha-paranitrophenylglucoside, beta-paranitrophenylglucoside, and paranitrophenyl-beta-thioglucoside. May also transport biotin. Required for apoplastic phloem sucrose loading in source tissues (e.g leaves) in order to transport it to sink tissues (e.g. roots, flowers).
Arabidopsis thaliana (taxid: 3702)

>sp|Q03411|SUT_SPIOL Sucrose transport protein OS=Spinacia oleracea PE=2 SV=1

 Score =  140 bits (352), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 76/109 (69%), Positives = 89/109 (81%), Gaps = 5/109 (4%)

Query: 21  GVKVGALAIFTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLL 80
           GVK GALAIF VLGIP AITFS+PFA+ASIFS +S +GQGLSLGVLNLAIVVPQM VS+ 
Sbjct: 416 GVKGGALAIFAVLGIPLAITFSIPFALASIFSASSGSGQGLSLGVLNLAIVVPQMFVSVT 475

Query: 81  SGPFDAVCGGGNMPAFMVGAVAAALSGIVALTLLPSTTADVPPPITEAG 129
           SGP+DA+ GGGN+PAF+VGAVAA  S +++ TLLPS     PPP  + G
Sbjct: 476 SGPWDAMFGGGNLPAFVVGAVAATASAVLSFTLLPS-----PPPEAKIG 519

Responsible for the transport of sucrose into the cell, with the concomitant uptake of protons (symport system). Can also transport maltose at a lesser rate.

Spinacia oleracea (taxid: 3562)

>sp|Q9C8X2|SUC5_ARATH Sucrose transport protein SUC5 OS=Arabidopsis thaliana GN=SUC5 PE=1 SV=1

 Score =  138 bits (347), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 69/105 (65%), Positives = 86/105 (81%)

Query: 18  PPVGVKVGALAIFTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLV 77
           P  G+K G  ++FTVLGIP AIT+S+PFA+ASIFS  S AGQGLSLGVLN+AI +PQM+V
Sbjct: 399 PSSGIKAGVFSLFTVLGIPLAITYSIPFALASIFSTNSGAGQGLSLGVLNIAICIPQMIV 458

Query: 78  SLLSGPFDAVCGGGNMPAFMVGAVAAALSGIVALTLLPSTTADVP 122
           S  SGP DA  GGGN+P+F+VGA+AAA+SG++ALT+LPS   D P
Sbjct: 459 SFSSGPLDAQFGGGNLPSFVVGAIAAAVSGVLALTVLPSPPPDAP 503

Responsible for the transport of sucrose into the cell, with the concomitant uptake of protons (symport system). Can also transport biotin, and probably maltose at a lesser rate. Plays a role in the nutrition of the filial tissues during early seed development.

Arabidopsis thaliana (taxid: 3702)

>sp|Q39232|SUC1_ARATH Sucrose transport protein SUC1 OS=Arabidopsis thaliana GN=SUC1 PE=1 SV=1

 Score =  127 bits (318), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 76/112 (67%), Positives = 89/112 (79%)

Query: 18  PPVGVKVGALAIFTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLV 77
           P   VK GAL++F VLGIP AITFS PFA+ASIFS  S AGQGLSLGVLNLAIV+PQM+V
Sbjct: 400 PSASVKAGALSLFAVLGIPLAITFSTPFALASIFSSCSGAGQGLSLGVLNLAIVIPQMIV 459

Query: 78  SLLSGPFDAVCGGGNMPAFMVGAVAAALSGIVALTLLPSTTADVPPPITEAG 129
           SL  GPFDA+ GGGN+PAF+V A+AAA+SG++ALT+LPS   D P   T  G
Sbjct: 460 SLGGGPFDALFGGGNLPAFIVAAIAAAISGVLALTVLPSPPPDAPKATTMGG 511

Responsible for the transport of sucrose into the cell, with the concomitant uptake of protons (symport system). This transport is both voltage- and energy-dependent. Can also transport other glucosides such as maltose, alpha-phenylglucoside and beta-phenylglucoside. May also transport biotin. Required for normal pollen germination and anthocyanin accumulation induced by sucrose.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZVK6|SUC8_ARATH Sucrose transport protein SUC8 OS=Arabidopsis thaliana GN=SUC8 PE=1 SV=1

 Score =  113 bits (283), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 64/98 (65%), Positives = 81/98 (82%)

Query: 18  PPVGVKVGALAIFTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLV 77
           P  G++ GAL +F +LGIP AITFS+PFA+ASI S +S AGQGLSLGVLN+AIV+PQM+V
Sbjct: 395 PTDGIRAGALTLFALLGIPLAITFSIPFALASIISSSSGAGQGLSLGVLNMAIVIPQMIV 454

Query: 78  SLLSGPFDAVCGGGNMPAFMVGAVAAALSGIVALTLLP 115
           S   GP DA+ GGGN+P F+VGA+AAA+S +VA T+LP
Sbjct: 455 SFGVGPIDALFGGGNLPRFVVGAIAAAISSVVAFTVLP 492

Responsible for the transport of sucrose into the cell, with the concomitant uptake of protons (symport system). Can also transport maltose at a lesser rate. May also transport biotin.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FG00|SUC9_ARATH Sucrose transport protein SUC9 OS=Arabidopsis thaliana GN=SUC9 PE=1 SV=1

 Score =  110 bits (276), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 63/98 (64%), Positives = 81/98 (82%)

Query: 18  PPVGVKVGALAIFTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLV 77
           P   ++ GAL++F +LGIP AITFS+PFA+ASI S +S AGQGLSLGVLN+AIV+PQM+V
Sbjct: 394 PTNAIRDGALSLFAILGIPLAITFSIPFALASIISSSSGAGQGLSLGVLNMAIVIPQMIV 453

Query: 78  SLLSGPFDAVCGGGNMPAFMVGAVAAALSGIVALTLLP 115
           S   GP DA+ GGGN+P F+VGA+AA +S +VALT+LP
Sbjct: 454 SFGVGPIDALFGGGNLPGFVVGAIAALISSVVALTVLP 491

High-affinity sucrose transporter. Responsible for the transport of sucrose into the cell, with the concomitant uptake of protons (symport system). Can also transport a wide range of glucosides, such as helicin, salicin, arbutin, maltose, fraxin, esculin, uranose, alpha-methylglucoside, alpha-phenylglucoside and beta-phenylglucoside. Plays a role in flowering time transition delay.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6A329|SUC6_ARATH Putative sucrose transport protein SUC6 OS=Arabidopsis thaliana GN=SUC6 PE=5 SV=2

 Score =  110 bits (275), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 62/98 (63%), Positives = 80/98 (81%)

Query: 18  PPVGVKVGALAIFTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLV 77
           P  G++ GAL +F +LGIP AITFS+PFA+ASI S +S AGQGLSLGVLN+ IV+PQM+V
Sbjct: 395 PTDGIRAGALTLFALLGIPLAITFSIPFALASIISSSSGAGQGLSLGVLNMTIVIPQMVV 454

Query: 78  SLLSGPFDAVCGGGNMPAFMVGAVAAALSGIVALTLLP 115
           S   GP DA+ GGGN+P F+VGA+AAA+S +VA ++LP
Sbjct: 455 SFGVGPIDALFGGGNLPGFVVGAIAAAISSVVAFSVLP 492

May be responsible for the transport of glucosides into the cell, with the concomitant uptake of protons (symport system). Does not seem to transport sucrose.

Arabidopsis thaliana (taxid: 3702)

>sp|Q67YF8|SUC7_ARATH Sucrose transport protein SUC7 OS=Arabidopsis thaliana GN=SUC7 PE=2 SV=2

 Score =  108 bits (271), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 63/98 (64%), Positives = 79/98 (80%)

Query: 18  PPVGVKVGALAIFTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLV 77
           P  G++ GAL +F +LGIP AITFS+PFA+ASI S +S AGQ LSLGVLN+AIV+PQM+V
Sbjct: 394 PTDGIRAGALTLFALLGIPLAITFSIPFALASIISSSSGAGQRLSLGVLNMAIVIPQMIV 453

Query: 78  SLLSGPFDAVCGGGNMPAFMVGAVAAALSGIVALTLLP 115
           S   GP DA+ G GN+P F+VGA+AAA+S IVA T+LP
Sbjct: 454 SFGVGPIDALFGDGNLPGFVVGAIAAAVSSIVAFTVLP 491

May be responsible for the transport of glucosides into the cell, with the concomitant uptake of protons (symport system). Does not seem to transport sucrose.

Arabidopsis thaliana (taxid: 3702)

>sp|O80605|SUC3_ARATH Sucrose transport protein SUC3 OS=Arabidopsis thaliana GN=SUC3 PE=1 SV=1

 Score =  102 bits (255), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 51/109 (46%), Positives = 79/109 (72%)

Query: 11  GATHILPPPVGVKVGALAIFTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAI 70
           G  +I+      +  A+ +F +LG P AIT+SVPF++ +  +  S  GQGL++GVLNLAI
Sbjct: 476 GIEYIMRGNETTRTAAVIVFALLGFPLAITYSVPFSVTAEVTADSGGGQGLAIGVLNLAI 535

Query: 71  VVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAALSGIVALTLLPSTTA 119
           V+PQM+VSL +GP+D + GGGN+PAF++ +VAA  +G++AL  LP+ ++
Sbjct: 536 VIPQMIVSLGAGPWDQLFGGGNLPAFVLASVAAFAAGVIALQRLPTLSS 584

Responsible for the transport of sucrose into the cell, with the concomitant uptake of protons (symport system). Can also transport maltose at a lesser rate. May also transport biotin. Probably involved in carpel maturation that leads to pod shatter and seed dispersal.

Arabidopsis thaliana (taxid: 3702)

>sp|Q69JW3|SUT5_ORYSJ Sucrose transport protein SUT5 OS=Oryza sativa subsp. japonica GN=SUT5 PE=1 SV=1

 Score = 94.7 bits (234), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 49/101 (48%), Positives = 69/101 (68%), Gaps = 1/101 (0%)

Query: 17  PPPVGVKVGALAIFTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQML 76
           P P  +K  AL +F ++GIPQA+ FSVP+A+AS  +     GQGL++GVLN+AIVVPQ++
Sbjct: 423 PDPT-LKAVALVVFALIGIPQAVLFSVPWAVASEVTAEEGGGQGLAIGVLNIAIVVPQLV 481

Query: 77  VSLLSGPFDAVCGGGNMPAFMVGAVAAALSGIVALTLLPST 117
           ++L +GP D     GN PAF +G   A + G++AL  LP T
Sbjct: 482 IALTAGPIDGAFNKGNTPAFGIGGAFAFICGVLALIWLPKT 522

Responsible for the transport of sucrose into the cell, with the concomitant uptake of protons (symport system). Can also transport other glucosides such as maltose, arbutin, salicin, helicin, alpha-phenylglucoside and beta-phenylglucoside.

Oryza sativa subsp. japonica (taxid: 39947)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	139
21063921	528	citrus sucrose transporter 1 [Citrus sin	1.0	0.263	1.0	2e-70
468562	533	sucrose carrier [Ricinus communis]	0.877	0.228	0.688	6e-39
255571812	533	sucrose transport protein, putative [Ric	0.877	0.228	0.680	2e-38
227809927	535	sucrose transporter 3 [Hevea brasiliensi	0.877	0.228	0.680	5e-38
167859950	535	sucrose transporter 6 [Hevea brasiliensi	0.877	0.228	0.680	1e-37
321531550	535	sucrose transporter 1 [Populus tremula x	0.870	0.226	0.721	2e-36
51863031	516	sucrose transporter [Juglans regia]	0.863	0.232	0.677	5e-36
321531546	535	sucrose transporter 1 [Populus trichocar	0.949	0.246	0.669	6e-36
321531548	535	sucrose transporter 1 [Populus trichocar	0.870	0.226	0.713	7e-36
17447420	502	sucrose transporter 1 [Alonsoa meridiona	0.870	0.241	0.672	8e-36

>gi|21063921|gb|AAM29150.1| citrus sucrose transporter 1 [Citrus sinensis]

 Score =  269 bits (688), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 139/139 (100%), Positives = 139/139 (100%)

Query: 1   SNRRSVTTAGGATHILPPPVGVKVGALAIFTVLGIPQAITFSVPFAMASIFSRTSAAGQG 60
           SNRRSVTTAGGATHILPPPVGVKVGALAIFTVLGIPQAITFSVPFAMASIFSRTSAAGQG
Sbjct: 390 SNRRSVTTAGGATHILPPPVGVKVGALAIFTVLGIPQAITFSVPFAMASIFSRTSAAGQG 449

Query: 61  LSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAALSGIVALTLLPSTTAD 120
           LSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAALSGIVALTLLPSTTAD
Sbjct: 450 LSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAALSGIVALTLLPSTTAD 509

Query: 121 VPPPITEAGTATANQTNKL 139
           VPPPITEAGTATANQTNKL
Sbjct: 510 VPPPITEAGTATANQTNKL 528

Source: Citrus sinensis

Species: Citrus sinensis

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|468562|emb|CAA83436.1| sucrose carrier [Ricinus communis]

 Score =  165 bits (417), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 84/122 (68%), Positives = 102/122 (83%)

Query: 1   SNRRSVTTAGGATHILPPPVGVKVGALAIFTVLGIPQAITFSVPFAMASIFSRTSAAGQG 60
           S RR  T +GGA   LPPP GVK GALA+F V+G+PQAIT+S+PFA+ASIFS TS AGQG
Sbjct: 402 STRRFATVSGGAKVPLPPPSGVKAGALALFAVMGVPQAITYSIPFALASIFSNTSGAGQG 461

Query: 61  LSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAALSGIVALTLLPSTTAD 120
           LSLGVLNL+IV+PQM+VS+ +GP+DA+ GGGN+PAF+VGAVAA  SGI ALT+LPS   D
Sbjct: 462 LSLGVLNLSIVIPQMIVSVAAGPWDALFGGGNLPAFVVGAVAALASGIFALTMLPSPQPD 521

Query: 121 VP 122
           +P
Sbjct: 522 MP 523

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255571812|ref|XP_002526849.1| sucrose transport protein, putative [Ricinus communis] gi|223533853|gb|EEF35584.1| sucrose transport protein, putative [Ricinus communis]

 Score =  163 bits (413), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 83/122 (68%), Positives = 102/122 (83%)

Query: 1   SNRRSVTTAGGATHILPPPVGVKVGALAIFTVLGIPQAITFSVPFAMASIFSRTSAAGQG 60
           S +R  T +GGA   LPPP GVK GALA+F V+G+PQAIT+S+PFA+ASIFS TS AGQG
Sbjct: 402 STKRFATVSGGAKVPLPPPSGVKAGALALFAVMGVPQAITYSIPFALASIFSNTSGAGQG 461

Query: 61  LSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAALSGIVALTLLPSTTAD 120
           LSLGVLNL+IV+PQM+VS+ +GP+DA+ GGGN+PAF+VGAVAA  SGI ALT+LPS   D
Sbjct: 462 LSLGVLNLSIVIPQMIVSVAAGPWDALFGGGNLPAFVVGAVAALASGIFALTMLPSPQPD 521

Query: 121 VP 122
           +P
Sbjct: 522 MP 523

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|227809927|gb|ABK60190.2| sucrose transporter 3 [Hevea brasiliensis]

 Score =  162 bits (409), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 83/122 (68%), Positives = 100/122 (81%)

Query: 1   SNRRSVTTAGGATHILPPPVGVKVGALAIFTVLGIPQAITFSVPFAMASIFSRTSAAGQG 60
           S+RR  T  GGAT  LPPP  VK GALA+F V+G+PQAIT+S+PFA+ASIF  T+ AGQG
Sbjct: 401 SHRRFATVGGGATVPLPPPGDVKAGALALFAVMGVPQAITYSIPFALASIFCNTAGAGQG 460

Query: 61  LSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAALSGIVALTLLPSTTAD 120
           LSLGVLNL+IV+PQM+VS++SGP+DA+ GGGN+PAF+VG VAAA SGI A TLLPS   D
Sbjct: 461 LSLGVLNLSIVIPQMVVSVVSGPWDALFGGGNLPAFVVGGVAAAASGIFAFTLLPSPQPD 520

Query: 121 VP 122
            P
Sbjct: 521 AP 522

Source: Hevea brasiliensis

Species: Hevea brasiliensis

Genus: Hevea

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|167859950|emb|CAM34330.1| sucrose transporter 6 [Hevea brasiliensis]

 Score =  160 bits (406), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 83/122 (68%), Positives = 99/122 (81%)

Query: 1   SNRRSVTTAGGATHILPPPVGVKVGALAIFTVLGIPQAITFSVPFAMASIFSRTSAAGQG 60
           S+RR  T  GGAT  LPPP  VK GALA+F V+G+PQAIT+S+PFA+ASIF  T+ AGQG
Sbjct: 401 SHRRFATVGGGATVPLPPPGDVKAGALALFAVMGVPQAITYSIPFALASIFCNTAGAGQG 460

Query: 61  LSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAALSGIVALTLLPSTTAD 120
           LSLGVLNL+IV+PQM+VS+ SGP+DA+ GGGN+PAF+VG VAAA SGI A TLLPS   D
Sbjct: 461 LSLGVLNLSIVIPQMVVSVASGPWDALFGGGNLPAFVVGGVAAAASGIFAFTLLPSPQPD 520

Query: 121 VP 122
            P
Sbjct: 521 AP 522

Source: Hevea brasiliensis

Species: Hevea brasiliensis

Genus: Hevea

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|321531550|gb|ADW94615.1| sucrose transporter 1 [Populus tremula x Populus alba]

 Score =  156 bits (395), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 88/122 (72%), Positives = 106/122 (86%), Gaps = 1/122 (0%)

Query: 1   SNRRSVTTAGGATHILPPPVGVKVGALAIFTVLGIPQAITFSVPFAMASIFSRTSAAGQG 60
           SNRR  TTA G TH+LPPP GVK GALA+F V+GIPQAIT+S+PFA+ASIFS TS AGQG
Sbjct: 401 SNRR-YTTANGGTHLLPPPSGVKAGALALFAVMGIPQAITYSIPFALASIFSNTSGAGQG 459

Query: 61  LSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAALSGIVALTLLPSTTAD 120
           LSLGVLNL+IV+PQM+VS+ +GP+DA+ GGGN+PAF+VGAVAAA SGI+A T+LPS   D
Sbjct: 460 LSLGVLNLSIVIPQMVVSVAAGPWDALFGGGNLPAFVVGAVAAAASGILAFTMLPSPPPD 519

Query: 121 VP 122
           +P
Sbjct: 520 IP 521

Source: Populus tremula x Populus alba

Species: Populus tremula x Populus alba

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|51863031|gb|AAU11810.1| sucrose transporter [Juglans regia]

 Score =  155 bits (392), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 82/121 (67%), Positives = 99/121 (81%), Gaps = 1/121 (0%)

Query: 1   SNRRSVTTAGGATHILPPPVGVKVGALAIFTVLGIPQAITFSVPFAMASIFSRTSAAGQG 60
           S R +    GGAT + PPP GVK GALA+F VLGIP A+T+S+PFA+ASIFS  S AGQG
Sbjct: 382 SARHTAAANGGAT-LSPPPAGVKAGALALFAVLGIPLAVTYSIPFALASIFSHASGAGQG 440

Query: 61  LSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAALSGIVALTLLPSTTAD 120
           LSLGVLNLAIV PQMLVS+ SGPFDA+ GGGN+PAF+VGA++AA SGI++LT+LP  T D
Sbjct: 441 LSLGVLNLAIVFPQMLVSVASGPFDALFGGGNLPAFVVGAISAAASGILSLTMLPFPTTD 500

Query: 121 V 121
           +
Sbjct: 501 L 501

Source: Juglans regia

Species: Juglans regia

Genus: Juglans

Family: Juglandaceae

Order: Fagales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|321531546|gb|ADW94613.1| sucrose transporter 1 [Populus trichocarpa]

 Score =  155 bits (391), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 89/133 (66%), Positives = 110/133 (82%), Gaps = 1/133 (0%)

Query: 1   SNRRSVTTAGGATHILPPPVGVKVGALAIFTVLGIPQAITFSVPFAMASIFSRTSAAGQG 60
           SNRR  TT  G TH+LPPP GVK GALA+F V+GIPQAIT+S+PFA+ASIFS TS AGQG
Sbjct: 401 SNRR-YTTVNGGTHLLPPPSGVKAGALALFAVMGIPQAITYSIPFALASIFSNTSGAGQG 459

Query: 61  LSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAALSGIVALTLLPSTTAD 120
           LSLGVLNL+IV+PQM+VS+ +GP+DA+ GGGN+PAF+VGAVAAA SGI+A T+LPS   D
Sbjct: 460 LSLGVLNLSIVIPQMVVSVAAGPWDALFGGGNLPAFVVGAVAAAASGILAFTMLPSPPPD 519

Query: 121 VPPPITEAGTATA 133
           +P     A +++A
Sbjct: 520 IPSNKRAATSSSA 532

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|321531548|gb|ADW94614.1| sucrose transporter 1 [Populus trichocarpa]

 Score =  155 bits (391), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 87/122 (71%), Positives = 105/122 (86%), Gaps = 1/122 (0%)

Query: 1   SNRRSVTTAGGATHILPPPVGVKVGALAIFTVLGIPQAITFSVPFAMASIFSRTSAAGQG 60
           SNRR  TT  G TH+LPPP GVK GALA+F V+GIPQAIT+S+PFA+ASIFS TS AGQG
Sbjct: 401 SNRR-YTTVNGGTHLLPPPSGVKAGALALFAVMGIPQAITYSIPFALASIFSNTSGAGQG 459

Query: 61  LSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAALSGIVALTLLPSTTAD 120
           LSLGVLNL+IV+PQM+VS+ +GP+DA+ GGGN+PAF+VGAVAAA SGI+A T+LPS   D
Sbjct: 460 LSLGVLNLSIVIPQMVVSVAAGPWDALFGGGNLPAFVVGAVAAAASGILAFTMLPSPPPD 519

Query: 121 VP 122
           +P
Sbjct: 520 IP 521

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|17447420|gb|AAF04295.2|AF191025_1 sucrose transporter 1 [Alonsoa meridionalis]

 Score =  154 bits (390), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 82/122 (67%), Positives = 99/122 (81%), Gaps = 1/122 (0%)

Query: 1   SNRRSVTTAGGATHILPPPV-GVKVGALAIFTVLGIPQAITFSVPFAMASIFSRTSAAGQ 59
            + R   + GGA   L PPV GVK+GALA+F+VLGIP A TFS+PFA+ASI+S  S AGQ
Sbjct: 373 QHHREYASVGGAAPTLQPPVHGVKIGALALFSVLGIPLAATFSIPFALASIYSSNSGAGQ 432

Query: 60  GLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAALSGIVALTLLPSTTA 119
           GLSLGVLNLAIV+PQM VS+ SGP+DA+ GGGN+PAF+VGAVAA +SGI+ALT LPS  +
Sbjct: 433 GLSLGVLNLAIVIPQMFVSVASGPWDALFGGGNLPAFVVGAVAATVSGIIALTALPSPPS 492

Query: 120 DV 121
           DV
Sbjct: 493 DV 494

Source: Alonsoa meridionalis

Species: Alonsoa meridionalis

Genus: Alonsoa

Family: Scrophulariaceae

Order: Lamiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	139
TAIR|locus:2016069	513	SUC1 "AT1G71880" [Arabidopsis	0.805	0.218	0.678	2.4e-35
TAIR|locus:2199633	512	SUC2 "AT1G22710" [Arabidopsis	0.798	0.216	0.663	8.3e-35
TAIR|locus:2016074	512	SUC5 "AT1G71890" [Arabidopsis	0.755	0.205	0.657	1.5e-33
TAIR|locus:2064253	492	SUC8 "AT2G14670" [Arabidopsis	0.705	0.199	0.653	2e-30
TAIR|locus:2160732	491	SUC9 "AT5G06170" [Arabidopsis	0.705	0.199	0.642	1e-29
TAIR|locus:2158352	492	SUC6 "AT5G43610" [Arabidopsis	0.705	0.199	0.632	1.8e-29
TAIR|locus:2028947	491	SUC7 "AT1G66570" [Arabidopsis	0.705	0.199	0.642	9e-29
TAIR|locus:2024422	510	SUT4 "AT1G09960" [Arabidopsis	0.776	0.211	0.546	1.7e-25
TAIR|locus:2056675	594	SUT2 "AT2G02860" [Arabidopsis	0.784	0.183	0.467	2.6e-22
UNIPROTKB|Q69JW3	535	SUT5 "Sucrose transport protei	0.762	0.198	0.477	8.4e-21

TAIR|locus:2016069 SUC1 "AT1G71880" [Arabidopsis thaliana (taxid:3702)]

 Score = 382 (139.5 bits), Expect = 2.4e-35, P = 2.4e-35
 Identities = 76/112 (67%), Positives = 89/112 (79%)

Query:    18 PPVGVKVGALAIFTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLV 77
             P   VK GAL++F VLGIP AITFS PFA+ASIFS  S AGQGLSLGVLNLAIV+PQM+V
Sbjct:   400 PSASVKAGALSLFAVLGIPLAITFSTPFALASIFSSCSGAGQGLSLGVLNLAIVIPQMIV 459

Query:    78 SLLSGPFDAVCGGGNMPAFMVGAVAAALSGIVALTLLPSTTADVPPPITEAG 129
             SL  GPFDA+ GGGN+PAF+V A+AAA+SG++ALT+LPS   D P   T  G
Sbjct:   460 SLGGGPFDALFGGGNLPAFIVAAIAAAISGVLALTVLPSPPPDAPKATTMGG 511

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM;NAS;IDA

GO:0005887 "integral to plasma membrane" evidence=IEA

GO:0008506 "sucrose:hydrogen symporter activity" evidence=ISS;IDA

GO:0008515 "sucrose transmembrane transporter activity" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0015770 "sucrose transport" evidence=IEA

GO:0016020 "membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005773 "vacuole" evidence=IDA

GO:0009624 "response to nematode" evidence=IEP

GO:0009846 "pollen germination" evidence=IMP

GO:0009506 "plasmodesma" evidence=IDA

GO:0006857 "oligopeptide transport" evidence=RCA

TAIR|locus:2199633 SUC2 "AT1G22710" [Arabidopsis thaliana (taxid:3702)]

 Score = 377 (137.8 bits), Expect = 8.3e-35, P = 8.3e-35
 Identities = 75/113 (66%), Positives = 91/113 (80%)

Query:    10 GGATHILPPPVGVKVGALAIFTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLA 69
             GGA     PP  V  GAL +F +LGIPQAITFS+PFA+ASIFS  S AGQGLSLGVLNLA
Sbjct:   393 GGAK--TGPPGNVTAGALTLFAILGIPQAITFSIPFALASIFSTNSGAGQGLSLGVLNLA 450

Query:    70 IVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAALSGIVALTLLPSTTADVP 122
             IVVPQM++S+  GPFD + GGGN+PAF++GA+AAA+SG++ALT+LPS   D P
Sbjct:   451 IVVPQMVISVGGGPFDELFGGGNIPAFVLGAIAAAVSGVLALTVLPSPPPDAP 503

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA;TAS

GO:0008506 "sucrose:hydrogen symporter activity" evidence=ISS;TAS

GO:0008515 "sucrose transmembrane transporter activity" evidence=IEA;IGI

GO:0009915 "phloem sucrose loading" evidence=NAS

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0015770 "sucrose transport" evidence=IEA

GO:0016020 "membrane" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2016074 SUC5 "AT1G71890" [Arabidopsis thaliana (taxid:3702)]

 Score = 365 (133.5 bits), Expect = 1.5e-33, P = 1.5e-33
 Identities = 69/105 (65%), Positives = 86/105 (81%)

Query:    18 PPVGVKVGALAIFTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLV 77
             P  G+K G  ++FTVLGIP AIT+S+PFA+ASIFS  S AGQGLSLGVLN+AI +PQM+V
Sbjct:   399 PSSGIKAGVFSLFTVLGIPLAITYSIPFALASIFSTNSGAGQGLSLGVLNIAICIPQMIV 458

Query:    78 SLLSGPFDAVCGGGNMPAFMVGAVAAALSGIVALTLLPSTTADVP 122
             S  SGP DA  GGGN+P+F+VGA+AAA+SG++ALT+LPS   D P
Sbjct:   459 SFSSGPLDAQFGGGNLPSFVVGAIAAAVSGVLALTVLPSPPPDAP 503

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0005887 "integral to plasma membrane" evidence=IEA

GO:0008506 "sucrose:hydrogen symporter activity" evidence=ISS

GO:0008515 "sucrose transmembrane transporter activity" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0015770 "sucrose transport" evidence=IEA

GO:0016020 "membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0048316 "seed development" evidence=IMP

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2064253 SUC8 "AT2G14670" [Arabidopsis thaliana (taxid:3702)]

 Score = 336 (123.3 bits), Expect = 2.0e-30, P = 2.0e-30
 Identities = 64/98 (65%), Positives = 81/98 (82%)

Query:    18 PPVGVKVGALAIFTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLV 77
             P  G++ GAL +F +LGIP AITFS+PFA+ASI S +S AGQGLSLGVLN+AIV+PQM+V
Sbjct:   395 PTDGIRAGALTLFALLGIPLAITFSIPFALASIISSSSGAGQGLSLGVLNMAIVIPQMIV 454

Query:    78 SLLSGPFDAVCGGGNMPAFMVGAVAAALSGIVALTLLP 115
             S   GP DA+ GGGN+P F+VGA+AAA+S +VA T+LP
Sbjct:   455 SFGVGPIDALFGGGNLPRFVVGAIAAAISSVVAFTVLP 492

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0005887 "integral to plasma membrane" evidence=IEA

GO:0008506 "sucrose:hydrogen symporter activity" evidence=ISS

GO:0008515 "sucrose transmembrane transporter activity" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0015770 "sucrose transport" evidence=IEA

GO:0016020 "membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2160732 SUC9 "AT5G06170" [Arabidopsis thaliana (taxid:3702)]

 Score = 330 (121.2 bits), Expect = 1.0e-29, P = 1.0e-29
 Identities = 63/98 (64%), Positives = 81/98 (82%)

Query:    18 PPVGVKVGALAIFTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLV 77
             P   ++ GAL++F +LGIP AITFS+PFA+ASI S +S AGQGLSLGVLN+AIV+PQM+V
Sbjct:   394 PTNAIRDGALSLFAILGIPLAITFSIPFALASIISSSSGAGQGLSLGVLNMAIVIPQMIV 453

Query:    78 SLLSGPFDAVCGGGNMPAFMVGAVAAALSGIVALTLLP 115
             S   GP DA+ GGGN+P F+VGA+AA +S +VALT+LP
Sbjct:   454 SFGVGPIDALFGGGNLPGFVVGAIAALISSVVALTVLP 491

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0005887 "integral to plasma membrane" evidence=IEA

GO:0008506 "sucrose:hydrogen symporter activity" evidence=ISS

GO:0008515 "sucrose transmembrane transporter activity" evidence=IEA;IDA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0005364 "maltose:hydrogen symporter activity" evidence=IDA

GO:0009908 "flower development" evidence=IMP

GO:0015768 "maltose transport" evidence=IDA

GO:0042946 "glucoside transport" evidence=IDA

GO:0042950 "salicin transmembrane transporter activity" evidence=IDA

GO:0042951 "arbutin transmembrane transporter activity" evidence=IDA

GO:0055085 "transmembrane transport" evidence=IDA

GO:0009909 "regulation of flower development" evidence=IMP

GO:0051119 "sugar transmembrane transporter activity" evidence=IDA

TAIR|locus:2158352 SUC6 "AT5G43610" [Arabidopsis thaliana (taxid:3702)]

 Score = 328 (120.5 bits), Expect = 1.8e-29, P = 1.8e-29
 Identities = 62/98 (63%), Positives = 80/98 (81%)

Query:    18 PPVGVKVGALAIFTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLV 77
             P  G++ GAL +F +LGIP AITFS+PFA+ASI S +S AGQGLSLGVLN+ IV+PQM+V
Sbjct:   395 PTDGIRAGALTLFALLGIPLAITFSIPFALASIISSSSGAGQGLSLGVLNMTIVIPQMVV 454

Query:    78 SLLSGPFDAVCGGGNMPAFMVGAVAAALSGIVALTLLP 115
             S   GP DA+ GGGN+P F+VGA+AAA+S +VA ++LP
Sbjct:   455 SFGVGPIDALFGGGNLPGFVVGAIAAAISSVVAFSVLP 492

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0005887 "integral to plasma membrane" evidence=IEA

GO:0008506 "sucrose:hydrogen symporter activity" evidence=ISS

GO:0008515 "sucrose transmembrane transporter activity" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0015770 "sucrose transport" evidence=IEA

GO:0016020 "membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2028947 SUC7 "AT1G66570" [Arabidopsis thaliana (taxid:3702)]

 Score = 322 (118.4 bits), Expect = 9.0e-29, P = 9.0e-29
 Identities = 63/98 (64%), Positives = 79/98 (80%)

Query:    18 PPVGVKVGALAIFTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLV 77
             P  G++ GAL +F +LGIP AITFS+PFA+ASI S +S AGQ LSLGVLN+AIV+PQM+V
Sbjct:   394 PTDGIRAGALTLFALLGIPLAITFSIPFALASIISSSSGAGQRLSLGVLNMAIVIPQMIV 453

Query:    78 SLLSGPFDAVCGGGNMPAFMVGAVAAALSGIVALTLLP 115
             S   GP DA+ G GN+P F+VGA+AAA+S IVA T+LP
Sbjct:   454 SFGVGPIDALFGDGNLPGFVVGAIAAAVSSIVAFTVLP 491

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0005887 "integral to plasma membrane" evidence=IEA

GO:0008506 "sucrose:hydrogen symporter activity" evidence=ISS

GO:0008515 "sucrose transmembrane transporter activity" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0015770 "sucrose transport" evidence=IEA

GO:0016020 "membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2024422 SUT4 "AT1G09960" [Arabidopsis thaliana (taxid:3702)]

 Score = 294 (108.6 bits), Expect = 1.7e-25, P = 1.7e-25
 Identities = 59/108 (54%), Positives = 75/108 (69%)

Query:    18 PPVGVKVGALAIFTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLV 77
             PP  +   A+ IFT+LGIP AIT+SVP+A+ SI   +   GQGLSLGVLNLAIV+PQ++V
Sbjct:   402 PPASIVFAAVLIFTILGIPLAITYSVPYALISIRIESLGLGQGLSLGVLNLAIVIPQVIV 461

Query:    78 SLLSGPFDAVCGGGNMPAFMVGAVAAALSGIVALTLLPSTTADVPPPI 125
             S+ SGP+D + GGGN PA  VGA    + GIVA+  LP T    P P+
Sbjct:   462 SVGSGPWDQLFGGGNSPALAVGAATGFIGGIVAILALPRTRIQKPIPL 509

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0008506 "sucrose:hydrogen symporter activity" evidence=ISS

GO:0008515 "sucrose transmembrane transporter activity" evidence=IEA;IGI;IMP

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0015770 "sucrose transport" evidence=IEA

GO:0016020 "membrane" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005773 "vacuole" evidence=IDA

GO:0005801 "cis-Golgi network" evidence=IDA

TAIR|locus:2056675 SUT2 "AT2G02860" [Arabidopsis thaliana (taxid:3702)]

 Score = 267 (99.0 bits), Expect = 2.6e-22, P = 2.6e-22
 Identities = 51/109 (46%), Positives = 79/109 (72%)

Query:    11 GATHILPPPVGVKVGALAIFTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAI 70
             G  +I+      +  A+ +F +LG P AIT+SVPF++ +  +  S  GQGL++GVLNLAI
Sbjct:   476 GIEYIMRGNETTRTAAVIVFALLGFPLAITYSVPFSVTAEVTADSGGGQGLAIGVLNLAI 535

Query:    71 VVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAALSGIVALTLLPSTTA 119
             V+PQM+VSL +GP+D + GGGN+PAF++ +VAA  +G++AL  LP+ ++
Sbjct:   536 VIPQMIVSLGAGPWDQLFGGGNLPAFVLASVAAFAAGVIALQRLPTLSS 584

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM;NAS

GO:0005887 "integral to plasma membrane" evidence=IEA

GO:0008506 "sucrose:hydrogen symporter activity" evidence=ISS

GO:0008515 "sucrose transmembrane transporter activity" evidence=IEA;IGI;IDA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0015770 "sucrose transport" evidence=IEA;NAS;TAS

GO:0016020 "membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009611 "response to wounding" evidence=IEP;RCA

GO:0090406 "pollen tube" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0009620 "response to fungus" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

UNIPROTKB|Q69JW3 SUT5 "Sucrose transport protein SUT5" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 252 (93.8 bits), Expect = 8.4e-21, P = 8.4e-21
 Identities = 52/109 (47%), Positives = 72/109 (66%)

Query:     9 AGGATHILPPPVGVKVGALAIFTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNL 68
             A G T   P P  +K  AL +F ++GIPQA+ FSVP+A+AS  +     GQGL++GVLN+
Sbjct:   417 AAGLTG--PDPT-LKAVALVVFALIGIPQAVLFSVPWAVASEVTAEEGGGQGLAIGVLNI 473

Query:    69 AIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAALSGIVALTLLPST 117
             AIVVPQ++++L +GP D     GN PAF +G   A + G++AL  LP T
Sbjct:   474 AIVVPQLVIALTAGPIDGAFNKGNTPAFGIGGAFAFICGVLALIWLPKT 522

GO:0005364 "maltose:hydrogen symporter activity" evidence=IDA

GO:0008506 "sucrose:hydrogen symporter activity" evidence=IDA

GO:0015768 "maltose transport" evidence=IDA

GO:0015770 "sucrose transport" evidence=IDA

GO:0042948 "salicin transport" evidence=IDA

GO:0042949 "arbutin transport" evidence=IDA

GO:0042950 "salicin transmembrane transporter activity" evidence=IDA

GO:0042951 "arbutin transmembrane transporter activity" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	139
TIGR01301	477	TIGR01301, GPH_sucrose, GPH family sucrose/H+ symp	1e-45

>gnl|CDD|233349 TIGR01301, GPH_sucrose, GPH family sucrose/H+ symporter

 Score =  153 bits (389), Expect = 1e-45
 Identities = 69/111 (62%), Positives = 86/111 (77%)

Query: 10  GGATHILPPPVGVKVGALAIFTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLA 69
            G    LPPP G+K  AL +F +LGIP AIT+S+PFA+ASI S    AGQGLS+GVLNLA
Sbjct: 367 DGDGESLPPPTGIKASALIVFAILGIPLAITYSIPFALASIRSSNLGAGQGLSMGVLNLA 426

Query: 70  IVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAALSGIVALTLLPSTTAD 120
           IV+PQ++VSL SGP+D + GGGN+PAF+VGAVAA +SG++AL LLP    D
Sbjct: 427 IVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLALILLPRPRVD 477

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. Length = 477

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	139
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	99.96
KOG0637	498	consensus Sucrose transporter and related proteins	99.68
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	97.27
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	97.09
PRK05122	399	major facilitator superfamily transporter; Provisi	96.97
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	96.75
TIGR00892	455	2A0113 monocarboxylate transporter 1.	96.6
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	96.43
PRK09874	408	drug efflux system protein MdtG; Provisional	96.37
TIGR00893	399	2A0114 d-galactonate transporter.	96.37
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	96.34
TIGR00900	365	2A0121 H+ Antiporter protein.	96.27
PRK10489	417	enterobactin exporter EntS; Provisional	96.25
PF13347	428	MFS_2: MFS/sugar transport protein	96.2
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	96.07
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	95.97
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	95.9
PRK03545	390	putative arabinose transporter; Provisional	95.71
TIGR00891	405	2A0112 putative sialic acid transporter.	95.55
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	95.53
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	95.46
PRK09952	438	shikimate transporter; Provisional	95.37
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	95.33
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	95.31
TIGR00893	399	2A0114 d-galactonate transporter.	95.25
PRK10077	479	xylE D-xylose transporter XylE; Provisional	95.23
PRK12382	392	putative transporter; Provisional	95.19
TIGR00901	356	2A0125 AmpG-related permease.	95.15
PRK10473	392	multidrug efflux system protein MdtL; Provisional	95.09
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	95.06
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	95.01
TIGR00895	398	2A0115 benzoate transport.	95.01
PRK11646	400	multidrug resistance protein MdtH; Provisional	94.87
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	94.84
PRK09528	420	lacY galactoside permease; Reviewed	94.81
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	94.78
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	94.77
PRK10091	382	MFS transport protein AraJ; Provisional	94.77
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	94.7
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	94.59
PRK10054	395	putative transporter; Provisional	94.54
PRK03893	496	putative sialic acid transporter; Provisional	94.2
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	94.2
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	94.15
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	94.14
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	94.13
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	94.07
PRK11663	434	regulatory protein UhpC; Provisional	94.04
PRK15403	413	multidrug efflux system protein MdtM; Provisional	93.97
TIGR00898	505	2A0119 cation transport protein.	93.87
PRK11652	394	emrD multidrug resistance protein D; Provisional	93.66
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	93.63
TIGR00898	505	2A0119 cation transport protein.	93.6
PRK10504	471	putative transporter; Provisional	93.56
PRK15011	393	sugar efflux transporter B; Provisional	93.43
TIGR00897	402	2A0118 polyol permease family. This family of prot	93.43
PRK11663	434	regulatory protein UhpC; Provisional	93.35
PRK11195	393	lysophospholipid transporter LplT; Provisional	93.32
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	93.3
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	93.16
PRK10213	394	nepI ribonucleoside transporter; Reviewed	93.12
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	93.0
PRK09528	420	lacY galactoside permease; Reviewed	92.96
PRK10077	479	xylE D-xylose transporter XylE; Provisional	92.92
PRK15011	393	sugar efflux transporter B; Provisional	92.89
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	92.84
TIGR00900	365	2A0121 H+ Antiporter protein.	92.82
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	92.79
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	92.65
PRK09874	408	drug efflux system protein MdtG; Provisional	92.64
PRK10406	432	alpha-ketoglutarate transporter; Provisional	92.55
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	92.22
TIGR00805	633	oat sodium-independent organic anion transporter.	92.2
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	92.07
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	92.05
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	92.02
PRK12307	426	putative sialic acid transporter; Provisional	91.91
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	91.71
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	91.69
PRK10489	417	enterobactin exporter EntS; Provisional	91.6
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	91.57
PRK03633	381	putative MFS family transporter protein; Provision	91.54
PRK09705	393	cynX putative cyanate transporter; Provisional	91.53
PRK11043	401	putative transporter; Provisional	91.08
PRK05122	399	major facilitator superfamily transporter; Provisi	91.03
PRK11646	400	multidrug resistance protein MdtH; Provisional	90.83
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	90.61
PRK14995	495	methyl viologen resistance protein SmvA; Provision	90.33
PRK10642	490	proline/glycine betaine transporter; Provisional	90.31
PRK10207	489	dipeptide/tripeptide permease B; Provisional	90.29
PRK03699	394	putative transporter; Provisional	90.27
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	89.89
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	89.44
PRK10642	490	proline/glycine betaine transporter; Provisional	88.8
PRK11902	402	ampG muropeptide transporter; Reviewed	88.66
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	88.25
PRK11010	491	ampG muropeptide transporter; Validated	88.13
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	88.13
TIGR00896	355	CynX cyanate transporter. This family of proteins	88.09
PRK10406	432	alpha-ketoglutarate transporter; Provisional	87.85
PRK09848	448	glucuronide transporter; Provisional	87.5
PRK09669	444	putative symporter YagG; Provisional	87.4
PRK09584	500	tppB putative tripeptide transporter permease; Rev	87.32
PRK11462	460	putative transporter; Provisional	87.2
TIGR00897	402	2A0118 polyol permease family. This family of prot	86.93
PRK10504	471	putative transporter; Provisional	86.65
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	86.59
KOG1330	493	consensus Sugar transporter/spinster transmembrane	86.26
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	85.93
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	85.9
PRK12382	392	putative transporter; Provisional	85.59
PRK11010	491	ampG muropeptide transporter; Validated	85.33
PRK09669	444	putative symporter YagG; Provisional	84.52
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	84.46
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	84.01
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	83.8
PRK03699	394	putative transporter; Provisional	83.68
PRK03893	496	putative sialic acid transporter; Provisional	83.01
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	82.98
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	82.84
PRK09584	500	tppB putative tripeptide transporter permease; Rev	82.52
PRK11043	401	putative transporter; Provisional	81.7
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	81.65
PLN00028	476	nitrate transmembrane transporter; Provisional	81.59
PRK09952	438	shikimate transporter; Provisional	81.2
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	80.62
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	80.43
TIGR00895	398	2A0115 benzoate transport.	80.26
TIGR00892	455	2A0113 monocarboxylate transporter 1.	80.19
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	80.02

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=99.96  E-value=3.1e-30  Score=226.60  Aligned_cols=112  Identities=62%  Similarity=1.011  Sum_probs=106.6

Q ss_pred             CCCceecCCCCcchHHHHHHHHHHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhc
Q 038309            9 AGGATHILPPPVGVKVGALAIFTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVC   88 (139)
Q Consensus         9 ~~~~~~~~~p~~~~~~~al~lf~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lf   88 (139)
                      .++.++..+|+.|+|++++++|+++||+||+++|+||+|+++.++++++|||+|||+||++||+|||+++++.|+|+++|
T Consensus       366 ~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~~~siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~  445 (477)
T TIGR01301       366 YDGDGESLPPPTGIKASALIVFAILGIPLAITYSIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLF  445 (477)
T ss_pred             ccccccccCcchhhHHHHHHHHHHhhHHHHHHHHHhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            45667777899999999999999999999999999999999999987789999999999999999999999999999999


Q ss_pred             CCCchhHHHHHHHHHHHHHHHhhhcccCCCCC
Q 038309           89 GGGNMPAFMVGAVAAALSGIVALTLLPSTTAD  120 (139)
Q Consensus        89 gg~~~~A~v~ggv~~liaail~~~i~p~~~~~  120 (139)
                      |+++.+++.+||+++++||+++++++||++++
T Consensus       446 g~~~~~~~~~~gv~~~~aa~~~~~~~~~~~~~  477 (477)
T TIGR01301       446 GGGNLPAFVVGAVAAFVSGLLALILLPRPRVD  477 (477)
T ss_pred             CCCCeeHHHHHHHHHHHHHHHHHHhCCCCCCC
Confidence            99999999999999999999999999999864

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=99.68  E-value=1.3e-17  Score=149.53  Aligned_cols=100  Identities=60%  Similarity=0.913  Sum_probs=95.8

Q ss_pred             CCCCcchHHHHHHHHHHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCCCchhH
Q 038309           16 LPPPVGVKVGALAIFTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPA   95 (139)
Q Consensus        16 ~~p~~~~~~~al~lf~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~~~~A   95 (139)
                      ..|...++..++.++..+|+|||+++|+||++.|..+.++|.++|+..|++|.+|+||||+++++.||||++||++|.++
T Consensus       399 ~~~~~~~p~~l~~~y~~~g~~~a~t~~~pf~~~s~~~~~sg~g~G~~~gvln~~I~ipQvivs~~~Gp~~~~~G~~~~~~  478 (498)
T KOG0637|consen  399 SSPLLTVPYGALALYAILGIPLAITFSIPFALASIEIGNSGLGQGLDLGVLNCAIVIPQVLVSLGLGPLDQLFGGGNLPA  478 (498)
T ss_pred             ecchhcccHHHHHHHHHhCCccccccccccccccccccCccCCCCceeeeeeeeeeehhheeeccccchhhhcCCcchhH
Confidence            35888999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhhccc
Q 038309           96 FMVGAVAAALSGIVALTLLP  115 (139)
Q Consensus        96 ~v~ggv~~liaail~~~i~p  115 (139)
                      ++.++++++++++.++++.|
T Consensus       479 ~~~~a~s~~~~~i~al~v~~  498 (498)
T KOG0637|consen  479 FVSGAVALLIGGIVALLVLY  498 (498)
T ss_pred             HHHHHHHHHHHHHHheEecC
Confidence            99999999999999998764

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=97.27  E-value=0.0014  Score=53.25  Aligned_cols=90  Identities=21%  Similarity=0.200  Sum_probs=69.7

Q ss_pred             HHHHHHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCCCchhHHHHHHHHHHHH
Q 038309           27 LAIFTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAALS  106 (139)
Q Consensus        27 l~lf~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~~~~A~v~ggv~~lia  106 (139)
                      .+....+|+.+....+..++++.+..|+  +.+|..+|+.|...-+.+.+.+...|.+.+. +++....+..+..+.+++
T Consensus       312 ~~~~~~~g~~~~~~~~~~~~~~~~~~p~--~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~-~~~~~~~~~~~~~~~~~~  388 (406)
T PRK11551        312 LLAGFAAGLFVVGGQSVLYALAPLFYPT--QVRGTGVGAAVAVGRLGSMAGPLLAGQLLAL-GRSTVGVIGASIPVILVA  388 (406)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHcch--hhhhhhhhHHHHhhhHHHHHHhhhHhhhhcc-CCchHHHHHHHHHHHHHH
Confidence            3455667888888888888999999988  6789999999999999988888878876654 345556677777888888


Q ss_pred             HHHhhhcccCCCC
Q 038309          107 GIVALTLLPSTTA  119 (139)
Q Consensus       107 ail~~~i~p~~~~  119 (139)
                      .++++++.+|++.
T Consensus       389 ~~~~~~~~~~~~~  401 (406)
T PRK11551        389 ALAALLLVSRPSR  401 (406)
T ss_pred             HHHHHHHhcchhc
Confidence            8888877666553

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=97.09  E-value=0.0034  Score=41.73  Aligned_cols=88  Identities=20%  Similarity=0.243  Sum_probs=67.1

Q ss_pred             HHHHHHHHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCCCchhHHHHHHHHHH
Q 038309           25 GALAIFTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAA  104 (139)
Q Consensus        25 ~al~lf~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~~~~A~v~ggv~~l  104 (139)
                      ..++.+...|+..+......++++.+..++  +.++..+|+.|....+-+.+.....+.+.+.+  +-...+.+.++..+
T Consensus        53 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~  128 (141)
T TIGR00880        53 VLIIARFLQGFGAAFALVAGAALIADIYPP--EERGVALGLMSAGIALGPLLGPPLGGVLAQFL--GWRAPFLFLAILAL  128 (141)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHCCh--hhhhHHHHHHHHhHHHHHHHhHHhHHHHhccc--chHHHHHHHHHHHH
Confidence            344566788888888888888998999887  56899999999999999888877777665432  23456777778888


Q ss_pred             HHHHHhhhcccC
Q 038309          105 LSGIVALTLLPS  116 (139)
Q Consensus       105 iaail~~~i~p~  116 (139)
                      ++.++.+++.|+
T Consensus       129 ~~~~~~~~~~~~  140 (141)
T TIGR00880       129 AAFILLAFLLPE  140 (141)
T ss_pred             HHHHHHhhcCCC
Confidence            888777776653

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=96.97  E-value=0.0026  Score=51.67  Aligned_cols=89  Identities=18%  Similarity=0.168  Sum_probs=61.3

Q ss_pred             HHHHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCCCchhHHHHHHHHHHHHHH
Q 038309           29 IFTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAALSGI  108 (139)
Q Consensus        29 lf~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~~~~A~v~ggv~~liaai  108 (139)
                      ...+.|+..+..+..-.+.+.+..++  +++|..+|++|....+-+.+.+...|.+.+.+|  -..++.+.++..+++.+
T Consensus       308 ~~~l~G~~~~~~~~~~~~~~~~~~~~--~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g--~~~~~~~~~~~~~~~~~  383 (399)
T PRK05122        308 GAALTGFGFSLVFPALGVEAVKRVPP--QNRGAALGAYSVFLDLSLGITGPLAGLVASWFG--YPSIFLAAALAALLGLA  383 (399)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHhCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--HHHHHHHHHHHHHHHHH
Confidence            34455555554443222444566666  678999999999999988887776777655544  45677788888888888


Q ss_pred             HhhhcccCCCCCC
Q 038309          109 VALTLLPSTTADV  121 (139)
Q Consensus       109 l~~~i~p~~~~~~  121 (139)
                      +.+++.+|+++|.
T Consensus       384 ~~~~~~~~~~~~~  396 (399)
T PRK05122        384 LTWLLYRRAPRAV  396 (399)
T ss_pred             HHHHhcccccccC
Confidence            8887777766653

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=96.75  E-value=0.0039  Score=48.27  Aligned_cols=90  Identities=21%  Similarity=0.286  Sum_probs=68.1

Q ss_pred             HHHHHHHHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCCCchhHHHHHHHHHH
Q 038309           25 GALAIFTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAA  104 (139)
Q Consensus        25 ~al~lf~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~~~~A~v~ggv~~l  104 (139)
                      .-++...+.|+..+.....-.+++++..++  ++++.++|+.+...-+-.++..+.++.+.+.++  -...+.+.++..+
T Consensus        87 ~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~--~~~~~~~~~~~~~  162 (352)
T PF07690_consen   87 LLLIARFLLGIGSGFFSPASNALIADWFPP--EERGRAFGILSAGFSLGSILGPLLGGFLISYFG--WRWAFLISAILSL  162 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCT--CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCH--HCCHHHHHHHHHH
T ss_pred             HHhhhccccccccccccccccccccccchh--hhhhhccccccchhhhhhhcccchhhhhhhccc--cccccccccchhh
Confidence            455666788888888898999999999998  689999999999999999888777777655444  3446888888888


Q ss_pred             HHHHHhhhcccCCC
Q 038309          105 LSGIVALTLLPSTT  118 (139)
Q Consensus       105 iaail~~~i~p~~~  118 (139)
                      ++.++..+..++++
T Consensus       163 ~~~il~~~~~~~~~  176 (352)
T PF07690_consen  163 IAAILFILFLPEPP  176 (352)
T ss_dssp             HHHHHHHCCC---S
T ss_pred             hhhhhHhhhhhhcc
Confidence            88886544444333

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=96.60  E-value=0.001  Score=56.69  Aligned_cols=100  Identities=8%  Similarity=0.098  Sum_probs=69.9

Q ss_pred             HHHHHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCCCchhHHHHHHHHHHHHH
Q 038309           28 AIFTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAALSG  107 (139)
Q Consensus        28 ~lf~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~~~~A~v~ggv~~liaa  107 (139)
                      +.....|+.++......++++.+..++  ++.|..+|++|.+.-+-+++....+|.+.+.+++ -...+.++++.+++++
T Consensus       338 i~~~~~G~~~g~~~~~~~~~~~~~~~~--~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~-~~~~f~~~~~~~li~~  414 (455)
T TIGR00892       338 IYCIFFGLSFGSVGALLFEVLMDLVGA--QRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKN-YKYIFYASGSIVVSAG  414 (455)
T ss_pred             HHHHHHHHHhchHHHHHHHHHHHHhhH--HHHhhHHhHHHHHHHHHHHccccceeeeehhcCC-cchHHHHhhHHHHHHH
Confidence            344556666666667778888888887  5789999999999999999999888887665543 4467777777777766


Q ss_pred             HHhh----hcccCCCCCCCCCcccccc
Q 038309          108 IVAL----TLLPSTTADVPPPITEAGT  130 (139)
Q Consensus       108 il~~----~i~p~~~~~~~~~~~~~~~  130 (139)
                      ++.+    +..-..+||++..+.|.|.
T Consensus       415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~  441 (455)
T TIGR00892       415 LFLAIGNYINYRLLAKEQKAALEREGA  441 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence            5332    2334445666666666554

>TIGR00889 2A0110 nucleoside transporter

Probab=96.43  E-value=0.01  Score=50.23  Aligned_cols=89  Identities=10%  Similarity=-0.004  Sum_probs=66.4

Q ss_pred             HHHHHhchHHHHHhhchhHhhhhhccCCCCCceeeechhh-hhhhhHHHHHHhhhcchhhhcCCCch----hHHHHHHHH
Q 038309           28 AIFTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLN-LAIVVPQMLVSLLSGPFDAVCGGGNM----PAFMVGAVA  102 (139)
Q Consensus        28 ~lf~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN-~~IVIPQii~sl~~G~~~~lfgg~~~----~A~v~ggv~  102 (139)
                      +...+.|+.++........++++..|+  +.+|.++|+.| ....+-.++..+.+|.+.+.+|+.+.    .++.+.+++
T Consensus       313 l~~~l~g~~~~~~~~~~~~~i~~~~p~--~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~  390 (418)
T TIGR00889       313 LSMIVYGCAFDFFNISGSVFVEKEVPV--HIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGY  390 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCH--HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHH
Confidence            345567777776666666777888887  57999999998 45678888888888887777776554    678888888


Q ss_pred             HHHHHHHhhhcccCCC
Q 038309          103 AALSGIVALTLLPSTT  118 (139)
Q Consensus       103 ~liaail~~~i~p~~~  118 (139)
                      .++++++.+++.+++.
T Consensus       391 ~~i~~~l~~~~~~~~~  406 (418)
T TIGR00889       391 IAILAVLFMIFFKYSH  406 (418)
T ss_pred             HHHHHHHHHHHhCCcc
Confidence            8888888876665444

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=96.37  E-value=0.023  Score=45.72  Aligned_cols=86  Identities=13%  Similarity=0.081  Sum_probs=59.0

Q ss_pred             HHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCCCchhHHHHHHHHHHHHHHHh
Q 038309           31 TVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAALSGIVA  110 (139)
Q Consensus        31 ~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~~~~A~v~ggv~~liaail~  110 (139)
                      ++.|+..+..+..-.+++....++  +..|-.+|+.+.+--+-+++..+.+|.+.+.+|  -...|.+.+++.++++++.
T Consensus       319 ~~~g~~~~~~~~~~~~~~~~~~~~--~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g--~~~~f~~~~~~~l~~~~~~  394 (408)
T PRK09874        319 FLLGAADGALLPAVQTLLVYNSSN--QIAGRIFSYNQSFRDIGNVTGPLMGAAISANYG--FRAVFLVTAGVVLFNAVYS  394 (408)
T ss_pred             HHHHhhhHhhHHHHHHHHHHhCCc--ccceeeehHHHHHHHHHHHhhHHHHHHHHhhcc--hhHHHHHHHHHHHHHHHHH
Confidence            344555544443333444444454  578999999998888888887777777665543  4568888999999999988


Q ss_pred             hhcccCCCCC
Q 038309          111 LTLLPSTTAD  120 (139)
Q Consensus       111 ~~i~p~~~~~  120 (139)
                      ++..+|++.+
T Consensus       395 ~~~~~~~~~~  404 (408)
T PRK09874        395 WNSLRRRRIP  404 (408)
T ss_pred             HHHHHHhcCc
Confidence            8766665543

>TIGR00893 2A0114 d-galactonate transporter

Probab=96.37  E-value=0.01  Score=45.79  Aligned_cols=88  Identities=16%  Similarity=0.196  Sum_probs=62.7

Q ss_pred             HHHHHHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCCCchhHHHHHHHHHHHH
Q 038309           27 LAIFTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAALS  106 (139)
Q Consensus        27 l~lf~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~~~~A~v~ggv~~lia  106 (139)
                      ++...+.|+..+.....-.+++++..|+  +++|..+|+.+...-+-+++.....+.+.+.++  -...+.+.++..++.
T Consensus        86 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~--~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~  161 (399)
T TIGR00893        86 YILRVLLGAAEAPFFPGIILIVASWFPA--SERATAVSIFNSAQGLGGIIGGPLVGWILIHFS--WQWAFIIEGVLGIIW  161 (399)
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHhCCH--HHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCC--chHHHHHHHHHHHHH
Confidence            3444667777777777778888888887  578999999999999988888776666544433  345666777777777


Q ss_pred             HHHhhhcccCCC
Q 038309          107 GIVALTLLPSTT  118 (139)
Q Consensus       107 ail~~~i~p~~~  118 (139)
                      .++.++..|+++
T Consensus       162 ~~~~~~~~~~~~  173 (399)
T TIGR00893       162 GVLWLKFIPDPP  173 (399)
T ss_pred             HHHhhheecCCC
Confidence            766665555433

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=96.34  E-value=0.0062  Score=48.60  Aligned_cols=75  Identities=17%  Similarity=0.128  Sum_probs=56.0

Q ss_pred             hhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCCCchhHHHHHHHHHHHHHHHhhhcccCCCC
Q 038309           41 FSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAALSGIVALTLLPSTTA  119 (139)
Q Consensus        41 lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~~~~A~v~ggv~~liaail~~~i~p~~~~  119 (139)
                      ..+.++++++..|+  +.+|..+|+.|+.-.+-+++..+..|.+.+-+  +....+.+.+++.++++++++++.|+++.
T Consensus       401 ~~~~~~~~~~~~p~--~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~--~~~~~f~~~~~~~~~~~i~~~~~~~~~~~  475 (481)
T TIGR00879       401 GPVPWVIVSEIFPL--SLRPKGISIAVAANWLANFIVGFLFPTMLESI--GVGGVFIFFGGLNVLGLIFVYFFLPETKG  475 (481)
T ss_pred             cCeehhhhhccCCh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CccceehhHHHHHHHHHHHHheecccCCC
Confidence            35667777888887  57899999999999999998888777655433  24456667777788888888777776553

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>TIGR00900 2A0121 H+ Antiporter protein

Probab=96.27  E-value=0.015  Score=45.07  Aligned_cols=85  Identities=18%  Similarity=0.076  Sum_probs=62.9

Q ss_pred             HHHHHHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCCCchhHHHHHHHHHHHH
Q 038309           27 LAIFTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAALS  106 (139)
Q Consensus        27 l~lf~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~~~~A~v~ggv~~lia  106 (139)
                      ++...+.|+..+.....-.+++++..++  ++.+..+|+.+....+-+++..+.++.+.+.++  -...+.+.++..+++
T Consensus        96 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g--~~~~~~~~~~~~~~~  171 (365)
T TIGR00900        96 YVLAGILAIAQAFFTPAYQAMLPDLVPE--EQLTQANSLSQAVRSLFYIVGPGIGGLMYATLG--IKWAIWVDAVGFAIS  171 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCH--HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHH
Confidence            3445566777777777777888888887  578999999999999999888887777665443  345667777777777


Q ss_pred             HHHhhhccc
Q 038309          107 GIVALTLLP  115 (139)
Q Consensus       107 ail~~~i~p  115 (139)
                      .++.+++++
T Consensus       172 ~~~~~~~~~  180 (365)
T TIGR00900       172 ALLIVSVRI  180 (365)
T ss_pred             HHHHHhccc
Confidence            766665544

>PRK10489 enterobactin exporter EntS; Provisional

Probab=96.25  E-value=0.012  Score=48.50  Aligned_cols=86  Identities=15%  Similarity=0.132  Sum_probs=58.4

Q ss_pred             HHHHHHHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCCCchhHHH-HHHHHHH
Q 038309           26 ALAIFTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFM-VGAVAAA  104 (139)
Q Consensus        26 al~lf~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~~~~A~v-~ggv~~l  104 (139)
                      .++.+..+|+..+....+-++++.+..|+  +.+|..+|+++.+.-+-+.+.+...|.+.+.+|.  ..++. .+++.++
T Consensus       315 ~~~~~~~~g~~~~~~~~~~~~~~~~~~p~--~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~--~~~~~~~~~~~~~  390 (417)
T PRK10489        315 AVLCLALFGYLSAISSLLQYTLLQTQTPD--EMLGRINGLWTAQNVTGDAIGAALLGGLGAMMTP--VASASASGFGLLI  390 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhCCH--HHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhch--hhHHHHHHHHHHH
Confidence            34455556666666556667888888887  5689999999999989999998888887776543  34444 4445555


Q ss_pred             HHHHHhhhccc
Q 038309          105 LSGIVALTLLP  115 (139)
Q Consensus       105 iaail~~~i~p  115 (139)
                      ++.++.+.+.+
T Consensus       391 ~~~~~~~~~~~  401 (417)
T PRK10489        391 IGVLLLLVLGE  401 (417)
T ss_pred             HHHHHHHhccc
Confidence            55555554443

>PF13347 MFS_2: MFS/sugar transport protein

Probab=96.20  E-value=0.0054  Score=51.23  Aligned_cols=69  Identities=23%  Similarity=0.278  Sum_probs=58.4

Q ss_pred             hHHHHHHHHHHhchHHHHHhhchhHhhhhhccCCC-----CCceeeechhhhhhhhHHHHHHhhhcchhhhcCC
Q 038309           22 VKVGALAIFTVLGIPQAITFSVPFAMASIFSRTSA-----AGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGG   90 (139)
Q Consensus        22 ~~~~al~lf~~lGIpwAs~lSmPyAm~s~~i~~~g-----~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg   90 (139)
                      -....++++++.|++++..+.+|++|+++.++.++     ++.|+++|+.|++.-+.|-+.....|.+.++.|=
T Consensus       314 ~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~~Gy  387 (428)
T PF13347_consen  314 SPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLALVGY  387 (428)
T ss_pred             hHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHHHhCc
Confidence            44677788899999999999999999999997432     4579999999999999999999888887765543

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=96.07  E-value=0.022  Score=46.53  Aligned_cols=87  Identities=20%  Similarity=0.201  Sum_probs=63.7

Q ss_pred             HHHHHHHHhchHHHHHhhchhHhhhhhccCC-----CCCceeeechhhhhhhhHHHHHHhhhcchhhhcCCCc-------
Q 038309           25 GALAIFTVLGIPQAITFSVPFAMASIFSRTS-----AAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGN-------   92 (139)
Q Consensus        25 ~al~lf~~lGIpwAs~lSmPyAm~s~~i~~~-----g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~~-------   92 (139)
                      ..++++++.|+.++..+.+++++++..++..     .++.|.++|++|++.-+.+.+.....|.+.+.+|=+.       
T Consensus       313 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~G~~~~~~~~~~  392 (437)
T TIGR00792       313 LILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGIIGYVANAAQSPI  392 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCcCCHH
Confidence            4455667789999999999999999887621     2457999999999999999999888887766544221       


Q ss_pred             ------hhHHHHHHHHHHHHHHHhh
Q 038309           93 ------MPAFMVGAVAAALSGIVAL  111 (139)
Q Consensus        93 ------~~A~v~ggv~~liaail~~  111 (139)
                            .....+.+++.+++.++.+
T Consensus       393 ~~~~~~~~~~~~p~i~~~~~~~~~~  417 (437)
T TIGR00792       393 TLNGIKILMFAVPALFLLLAAIIIG  417 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                  1234456677777777665

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=95.97  E-value=0.027  Score=44.62  Aligned_cols=88  Identities=15%  Similarity=0.101  Sum_probs=62.3

Q ss_pred             HHHHHHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCCCchhHHHHHHHHHHHH
Q 038309           27 LAIFTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAALS  106 (139)
Q Consensus        27 l~lf~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~~~~A~v~ggv~~lia  106 (139)
                      ++...+.|+..+.....-.+++++..++  +++|..+|+.+...-+-+++....++.+.+.++  -..++.+.++..++.
T Consensus        97 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~--~~~~~~~~~~~~~~~  172 (385)
T TIGR00710        97 LVLRFVQAFGASAGSVISQALVRDIYPG--EELSRIYSILMPVLALAPAVAPLLGGYILVWLS--WHAIFAFLSLAGILL  172 (385)
T ss_pred             HHHHHHHHcchhHHHHHHHHHHHHhcCc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--HHHHHHHHHHHHHHH
Confidence            3345567777777777777888888886  578999999999888888887777776554432  344566666666677


Q ss_pred             HHHhhhcccCCC
Q 038309          107 GIVALTLLPSTT  118 (139)
Q Consensus       107 ail~~~i~p~~~  118 (139)
                      .++.++..|+.+
T Consensus       173 ~~~~~~~~~~~~  184 (385)
T TIGR00710       173 SALIFFILPETL  184 (385)
T ss_pred             HHHHHHhCCCCC
Confidence            666666555544

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=95.90  E-value=0.044  Score=42.61  Aligned_cols=85  Identities=16%  Similarity=0.161  Sum_probs=55.1

Q ss_pred             HHHHHHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHH-hhhcchhhhcCCCchhHHHHHHHHHHH
Q 038309           27 LAIFTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVS-LLSGPFDAVCGGGNMPAFMVGAVAAAL  105 (139)
Q Consensus        27 l~lf~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~s-l~~G~~~~lfgg~~~~A~v~ggv~~li  105 (139)
                      ++...+.|+..+.....-++++++..++  +++|..+|+.|....+-+++.. +.++.+...+  +-...+.+.++..++
T Consensus        87 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~  162 (379)
T TIGR00881        87 AALWALNGIFQGMGWPPCGRTVTKWFSR--SERGTWVSFWNCSHNVGGGLLPPLVLFGIAELY--SWHWVFIVPGIIAII  162 (379)
T ss_pred             HHHHHHHHhhccccCCchHHHHHHhcCH--hhheeeEeehhccchhHHHHHHHHHHHHHHhcC--CchhHHHHHHHHHHH
Confidence            3445566777777777777888888887  5789999999998888777776 3333333332  223446666665555


Q ss_pred             HHHHhhhccc
Q 038309          106 SGIVALTLLP  115 (139)
Q Consensus       106 aail~~~i~p  115 (139)
                      .++++++..+
T Consensus       163 ~~~~~~~~~~  172 (379)
T TIGR00881       163 VSLICFLLLR  172 (379)
T ss_pred             HHHHHheeeC
Confidence            5555554444

>PRK03545 putative arabinose transporter; Provisional

Probab=95.71  E-value=0.056  Score=44.16  Aligned_cols=87  Identities=16%  Similarity=0.167  Sum_probs=61.2

Q ss_pred             HHHHHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCCCchhHHHHHHHHHHHHH
Q 038309           28 AIFTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAALSG  107 (139)
Q Consensus        28 ~lf~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~~~~A~v~ggv~~liaa  107 (139)
                      +...+.|+..+.......+++++..++  ++.|..+|+++....+-+.+....++.+.+.+  +-..++.+.++..++..
T Consensus       102 ~~r~~~G~~~~~~~~~~~~~i~~~~~~--~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~--gw~~~f~~~~~~~~l~~  177 (390)
T PRK03545        102 ISRIGIAFAHAIFWSITASLAIRVAPA--GKKAQALSLLATGTALAMVLGLPLGRVIGQYL--GWRTTFLAIGGGALITL  177 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCh--hhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHh--cHHHHHHHHHHHHHHHH
Confidence            344567777777777777888888887  67899999999888888777766666655543  33456677777667776


Q ss_pred             HHhhhcccCCC
Q 038309          108 IVALTLLPSTT  118 (139)
Q Consensus       108 il~~~i~p~~~  118 (139)
                      ++.++..|+++
T Consensus       178 ~~~~~~~~~~~  188 (390)
T PRK03545        178 LLLIKLLPLLP  188 (390)
T ss_pred             HHHHHhCCCCC
Confidence            66666555543

>TIGR00891 2A0112 putative sialic acid transporter

Probab=95.55  E-value=0.027  Score=44.60  Aligned_cols=81  Identities=14%  Similarity=0.087  Sum_probs=56.6

Q ss_pred             HHHHHHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCCCchhHHHHHHHHHHHH
Q 038309           27 LAIFTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAALS  106 (139)
Q Consensus        27 l~lf~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~~~~A~v~ggv~~lia  106 (139)
                      ++...+.|+..+..+....+++++..++  +++|..+|+++....+-+++..+.++.+.+.++.+-...+.++++..++.
T Consensus       104 ~~~~~l~G~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f~~~~~~~~~~  181 (405)
T TIGR00891       104 FIARLVIGIGMGGEYGSSAAYVIESWPK--HLRNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISILPIIFA  181 (405)
T ss_pred             HHHHHHHHhhhhhhhHHHHHHHHHhCCh--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHH
Confidence            3445667777777777778888888887  67899999999988888888777666655554433445666666555554


Q ss_pred             HHH
Q 038309          107 GIV  109 (139)
Q Consensus       107 ail  109 (139)
                      .++
T Consensus       182 ~~~  184 (405)
T TIGR00891       182 LWL  184 (405)
T ss_pred             HHH
Confidence            433

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=95.53  E-value=0.05  Score=46.11  Aligned_cols=87  Identities=14%  Similarity=0.153  Sum_probs=59.5

Q ss_pred             HHHHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhh-hcCCCchhHHHHHHHHHHHHH
Q 038309           29 IFTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDA-VCGGGNMPAFMVGAVAAALSG  107 (139)
Q Consensus        29 lf~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~-lfgg~~~~A~v~ggv~~liaa  107 (139)
                      +..+.|+..+.......+++++..|+  +++|..+|+++....+=.++..+......+ .++++-...|.+.|+..++.+
T Consensus       128 ~r~l~G~~~~~~~~~~~~~i~~~~~~--~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~~~~~~~~f~~~g~~~~~~~  205 (467)
T PRK09556        128 LWALSGFFQSTGGPCSYSTITRWTPR--RKRGRFLGFWNISHNLGGAGAGGVALWGANYFFDGHVIGMFIFPSIIALIIG  205 (467)
T ss_pred             HHHHHHHHHhccchHHHHHHHHHcCc--cceeeeEEeeecccchhhhHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHH
Confidence            34456777777677777888999988  679999999999888877776664443333 345555566777676666666


Q ss_pred             HHhhhc-ccCC
Q 038309          108 IVALTL-LPST  117 (139)
Q Consensus       108 il~~~i-~p~~  117 (139)
                      ++++++ +++|
T Consensus       206 i~~~~~~~~~p  216 (467)
T PRK09556        206 FIGLRYGSDSP  216 (467)
T ss_pred             HHHHHhCCCCh
Confidence            666654 4443

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=95.46  E-value=0.075  Score=49.97  Aligned_cols=86  Identities=10%  Similarity=0.065  Sum_probs=65.5

Q ss_pred             HHHHHHHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCCCchhHHHHHHHHHHH
Q 038309           26 ALAIFTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAAL  105 (139)
Q Consensus        26 al~lf~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~~~~A~v~ggv~~li  105 (139)
                      -+++..+.|+..|......++++....++  ++.+..||++++..-+-+++..+.+|.+...+  +....|++++++.++
T Consensus       111 l~~~~~l~gi~~a~~~p~~~a~l~~~~~~--~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~--~~~~~~~~~~~~~~~  186 (1140)
T PRK06814        111 LFAALFLMGIHSALFGPIKYSILPDHLNK--DELLGANALVEAGTFIAILLGTIIGGLATISG--NFVILVALLMGIAVL  186 (1140)
T ss_pred             HHHHHHHHHHHHHhhchHHHHhhHhhcCc--cccchhhHHHHHHHHHHHHHHHHHHHHHHhcc--ccHHHHHHHHHHHHH
Confidence            34456677888898889999999999998  67899999999999999999988888877654  345566555565665


Q ss_pred             HHHHhhhccc
Q 038309          106 SGIVALTLLP  115 (139)
Q Consensus       106 aail~~~i~p  115 (139)
                      +.++++++.+
T Consensus       187 ~~~~~~~~~~  196 (1140)
T PRK06814        187 GWLASLFIPK  196 (1140)
T ss_pred             HHHHHhhCCC
Confidence            5555554443

>PRK09952 shikimate transporter; Provisional

Probab=95.37  E-value=0.095  Score=44.30  Aligned_cols=85  Identities=15%  Similarity=0.135  Sum_probs=56.3

Q ss_pred             HHHhchHHHHHhhchhHhhhhhccCCCCCceeeechh-hhhhhhHHHHHHhhhcchhhhcCCCchhHHHHHHHHHHHHHH
Q 038309           30 FTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVL-NLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAALSGI  108 (139)
Q Consensus        30 f~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIf-N~~IVIPQii~sl~~G~~~~lfgg~~~~A~v~ggv~~liaai  108 (139)
                      +...|+..+...++-++++++..|.  +..+..+|+. |+.-.+-..+.....|.+.+..+++....+.+.+++++++++
T Consensus       350 ~~l~~~~~~~~~~~~~~~~~e~~p~--~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v  427 (438)
T PRK09952        350 IMLANIAHDMVVCVQQPMFTEMFGA--SYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAM  427 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCc--chhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHH
Confidence            3444666666666667888888887  3445555553 444445666666666666555555556678888888999999


Q ss_pred             HhhhcccC
Q 038309          109 VALTLLPS  116 (139)
Q Consensus       109 l~~~i~p~  116 (139)
                      .+++++++
T Consensus       428 ~~~~~~~~  435 (438)
T PRK09952        428 TALLMKDN  435 (438)
T ss_pred             HHHHcccc
Confidence            88877553

>TIGR00899 2A0120 sugar efflux transporter

Probab=95.33  E-value=0.072  Score=42.17  Aligned_cols=78  Identities=9%  Similarity=0.010  Sum_probs=56.3

Q ss_pred             HhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCCCchhHHHHHHHHHHHHHHHhh
Q 038309           32 VLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAALSGIVAL  111 (139)
Q Consensus        32 ~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~~~~A~v~ggv~~liaail~~  111 (139)
                      +.|+.++....+.++.+.+..|+   +.|..+|++|.+.-+.+.+.++.+|.+.+.+|  -...+.+.+++.+++.++.+
T Consensus       297 ~~g~~~g~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g--~~~~~~~~~~~~~~~~~~~~  371 (375)
T TIGR00899       297 LNAIFIGILAGIGMLYFQDLMPG---RAGAATTLYTNTGRVGWIIAGSVGGILAERWS--YHAVYWFAIVMLIVALFCLL  371 (375)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCcc---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--chhHHHHHHHHHHHHHHHHh
Confidence            33444454444445555555554   46789999999998999998888887766543  55678888999999998887


Q ss_pred             hcc
Q 038309          112 TLL  114 (139)
Q Consensus       112 ~i~  114 (139)
                      +++
T Consensus       372 ~~~  374 (375)
T TIGR00899       372 LIK  374 (375)
T ss_pred             eec
Confidence            764

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=95.31  E-value=0.038  Score=42.22  Aligned_cols=86  Identities=24%  Similarity=0.316  Sum_probs=69.6

Q ss_pred             HHHHHHHHHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCCCchhHHHHHHHHH
Q 038309           24 VGALAIFTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAA  103 (139)
Q Consensus        24 ~~al~lf~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~~~~A~v~ggv~~  103 (139)
                      ......+...|+..+.......+++.+..|+  ++.|..+|+.|..--+-+.+.+...|.+.+.  .+-...+.+.++..
T Consensus       266 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~--~~~~~~~~~~~~~~  341 (352)
T cd06174         266 ALLLVALLLLGFGLGFAFPALLTLASELAPP--EARGTASGLFNTFGSLGGALGPLLAGLLLDT--GGYGGVFLILAALA  341 (352)
T ss_pred             HHHHHHHHHHHHHHhccchhHHHHHHhhcCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--cCcchHHHHHHHHH
Confidence            4455677788888999999999999999987  6789999999999999999988877776553  34567788888888


Q ss_pred             HHHHHHhhhc
Q 038309          104 ALSGIVALTL  113 (139)
Q Consensus       104 liaail~~~i  113 (139)
                      +++.++.+++
T Consensus       342 ~i~~i~~~~~  351 (352)
T cd06174         342 LLAALLLLLL  351 (352)
T ss_pred             HHHHHHheec
Confidence            8888776643

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>TIGR00893 2A0114 d-galactonate transporter

Probab=95.25  E-value=0.051  Score=42.00  Aligned_cols=71  Identities=23%  Similarity=0.208  Sum_probs=56.2

Q ss_pred             HhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCCCchhHHHHHHHHHHHHHHHhhhc
Q 038309           40 TFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAALSGIVALTL  113 (139)
Q Consensus        40 ~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~~~~A~v~ggv~~liaail~~~i  113 (139)
                      .....++++++..|+  +.+|.++|+.|....+.+.+.....|.+.+.+| +-.+.+.+.+++.+++.++.+++
T Consensus       328 ~~~~~~~~~~~~~~~--~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~  398 (399)
T TIGR00893       328 AGAIGWALISDNAPG--NIAGLTGGLINSLGNLGGIVGPIVIGAIAATTG-SFAGALMVVAALALIGALSYLLL  398 (399)
T ss_pred             hhhHHHHHHHhhcCh--hHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCC-chhHHHHHHHHHHHHHHHHHHHh
Confidence            567778888898887  678999999999999999988887777666543 24567888888888888777653

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=95.23  E-value=0.08  Score=44.01  Aligned_cols=88  Identities=14%  Similarity=0.066  Sum_probs=62.3

Q ss_pred             HHHHHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhc-----C-CCchhHHHHHHH
Q 038309           28 AIFTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVC-----G-GGNMPAFMVGAV  101 (139)
Q Consensus        28 ~lf~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lf-----g-g~~~~A~v~ggv  101 (139)
                      +.=++.|+..+..+....+++++..|+  +++|.+||+.+....+-+++..+.++......     + -+-...|.+.++
T Consensus       125 ~~R~l~G~~~g~~~~~~~~~i~e~~~~--~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~  202 (479)
T PRK10077        125 IYRIIGGIGVGLASMLSPMYIAEIAPA--HIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAI  202 (479)
T ss_pred             HHHHHHhhhHhHHhhHHHHHHHhhCCh--hhhhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCChHHHHHHHHH
Confidence            444677899999999999999999998  67999999999999888888766544332211     1 122346777778


Q ss_pred             HHHHHHHHhhhcccCC
Q 038309          102 AAALSGIVALTLLPST  117 (139)
Q Consensus       102 ~~liaail~~~i~p~~  117 (139)
                      ..++..++.+++.++|
T Consensus       203 ~~~~~~~~~~~l~~s~  218 (479)
T PRK10077        203 PALLFLMLLYFVPETP  218 (479)
T ss_pred             HHHHHHHHHHcCCCCc
Confidence            7777766555544433

>PRK12382 putative transporter; Provisional

Probab=95.19  E-value=0.058  Score=43.86  Aligned_cols=84  Identities=20%  Similarity=0.182  Sum_probs=59.8

Q ss_pred             HHHHHHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCCCchhHHHHHHHHHHHH
Q 038309           27 LAIFTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAALS  106 (139)
Q Consensus        27 l~lf~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~~~~A~v~ggv~~lia  106 (139)
                      +...++.|+.++..+..=.+.+.+..++  +++|..+|++|.+..+-+.+.+...|.+.+.+|  -..++.+.++..+++
T Consensus       306 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~--~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g--~~~~~~~~~~~~~~~  381 (392)
T PRK12382        306 LAGAALTGAGCSLIFPALGVEVVKRVPS--QVRGTALGGYAAFQDIAYGVSGPLAGMLATSFG--YPSVFLAGAISAVLG  381 (392)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHhcCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--chHHHHHHHHHHHHH
Confidence            4445556666665544323445556665  678999999999999999888888887666544  556788888888888


Q ss_pred             HHHhhhcc
Q 038309          107 GIVALTLL  114 (139)
Q Consensus       107 ail~~~i~  114 (139)
                      .++.++..
T Consensus       382 ~~~~~~~~  389 (392)
T PRK12382        382 IIVTILSF  389 (392)
T ss_pred             HHHHHhhc
Confidence            88777554

>TIGR00901 2A0125 AmpG-related permease

Probab=95.15  E-value=0.15  Score=40.73  Aligned_cols=72  Identities=13%  Similarity=-0.065  Sum_probs=53.5

Q ss_pred             hHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCCC------chhHHHHHHHHHHHHHHHhhhcccCCC
Q 038309           45 FAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGG------NMPAFMVGAVAAALSGIVALTLLPSTT  118 (139)
Q Consensus        45 yAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~------~~~A~v~ggv~~liaail~~~i~p~~~  118 (139)
                      -+++++..++  ++.|..+|+......+-+++.+..++.+...++++      -...|.+++++.+++.+..+++.++++
T Consensus       105 ~a~~~~~~~~--~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f~i~ai~~l~~~~~~~~~~~e~~  182 (356)
T TIGR00901       105 DAWRLEILSD--EELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYIFFWTALLILPGLLVTLFLAKEPQ  182 (356)
T ss_pred             HHHHHHhCCH--hhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence            3667788776  67899999998888888888887777766666543      455788888888887777676655543

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=95.09  E-value=0.085  Score=42.91  Aligned_cols=87  Identities=20%  Similarity=0.123  Sum_probs=55.7

Q ss_pred             HHHHHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCCCchhHHHHHHHHHHHHH
Q 038309           28 AIFTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAALSG  107 (139)
Q Consensus        28 ~lf~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~~~~A~v~ggv~~liaa  107 (139)
                      +...+.|+..+......++++++..++  ++++..+|+.|....+-.++..+.++.+.+.+  +-...+.+.++..++..
T Consensus        96 ~~~~l~g~~~~~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~--g~~~~~~~~~~~~~i~~  171 (392)
T PRK10473         96 AGRFLQGIGAGCCYVVAFAILRDTLDD--RRRAKVLSLLNGITCIIPVLAPVLGHLIMLKF--PWQSLFYTMAAMGILVL  171 (392)
T ss_pred             HHHHHHHhhhhHHHHHHHHHHHHHcCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc--ChHHHHHHHHHHHHHHH
Confidence            344567788887787888888888877  56788888888776555455454445443322  22345666666666666


Q ss_pred             HHhhhcccCCC
Q 038309          108 IVALTLLPSTT  118 (139)
Q Consensus       108 il~~~i~p~~~  118 (139)
                      +++++..|+++
T Consensus       172 ~~~~~~~~~~~  182 (392)
T PRK10473        172 LLSLFILKETR  182 (392)
T ss_pred             HHHHHHcCCCC
Confidence            66665555443

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=95.06  E-value=0.03  Score=46.33  Aligned_cols=89  Identities=15%  Similarity=0.180  Sum_probs=61.7

Q ss_pred             HHHHHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCCCchhHHHHHHHHHHHHH
Q 038309           28 AIFTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAALSG  107 (139)
Q Consensus        28 ~lf~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~~~~A~v~ggv~~liaa  107 (139)
                      +...+.|+..+.....-++++++..++  +++|..+|+++....+-+.+....+|.+.+.++  -...+.+.++..+++.
T Consensus        95 ~~~~~~G~~~~~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~--w~~~f~~~~~~~~~~~  170 (485)
T TIGR00711        95 IFRVIQGFGGGPLIPLSFSTLLNIYPP--EKRGRAMAIWGLTVLVAPALGPTLGGWIIENYH--WRWIFLINVPIGIIVV  170 (485)
T ss_pred             HHHHHHHhhhhhHHHHHHHHHHHHCCH--HHHHHHHHHHHHHHHHHhhhhhccHhHhccCcC--ceehhhhhhHHHHHHH
Confidence            344556777777777777888888887  578999999999988888877776666544332  3345666666666666


Q ss_pred             HHhhhcccCCCCC
Q 038309          108 IVALTLLPSTTAD  120 (139)
Q Consensus       108 il~~~i~p~~~~~  120 (139)
                      ++.++..|+++++
T Consensus       171 ~~~~~~~~~~~~~  183 (485)
T TIGR00711       171 VVAFFILPRDKPA  183 (485)
T ss_pred             HHHHHHcCCcccc
Confidence            6666666654443

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=95.01  E-value=0.042  Score=42.65  Aligned_cols=75  Identities=19%  Similarity=0.063  Sum_probs=56.8

Q ss_pred             HHHHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCCCchhHHHHHHHHHHHHH
Q 038309           29 IFTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAALSG  107 (139)
Q Consensus        29 lf~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~~~~A~v~ggv~~liaa  107 (139)
                      .+...|+.++..+++-.+++++..++  +++|..+|++|...-+-+.+.+...|.+.+.+|  -...+.+.+++.+++.
T Consensus       301 ~~~~~g~~~g~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g--~~~~f~~~~~~~~~~~  375 (377)
T TIGR00890       301 TVALVFFTWGGTISLFPSLVSDIFGP--ANSAANYGFLYTAKAVAGIFGGLIASHALTEIG--FEYTFIVTGAFALTSL  375 (377)
T ss_pred             HHHHHHHHhccchhccHHHHHHHhhh--hhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhc--hhhHHHHHHHHHHHhc
Confidence            34556777777777666788888887  678999999999999999998888887665543  4457777777776654

>TIGR00895 2A0115 benzoate transport

Probab=95.01  E-value=0.028  Score=44.15  Aligned_cols=87  Identities=20%  Similarity=0.253  Sum_probs=61.0

Q ss_pred             HHHHHHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCCCchhHHHHHHHHHHHH
Q 038309           27 LAIFTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAALS  106 (139)
Q Consensus        27 l~lf~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~~~~A~v~ggv~~lia  106 (139)
                      ++...+.|+.++..+..-++++++..++  +.+|..+|+.+....+-+++.++.+|.+.+.+|  -...+.+.++..++.
T Consensus       109 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g--~~~~~~~~~~~~~~~  184 (398)
T TIGR00895       109 LILRFLAGLGLGGLMPNLNALVSEYAPK--RFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFG--WRSLFYVGGIAPLLL  184 (398)
T ss_pred             HHHHHHHhcccccchhhHHHHHHHHcCH--HhhchhHhhHhhHHHHHHHHHHHHHHHHhhccc--ceeehhhhhhHHHHH
Confidence            3445677888888888888888988887  568999999999999988888877777655433  233455555555555


Q ss_pred             HHHhhhcccCC
Q 038309          107 GIVALTLLPST  117 (139)
Q Consensus       107 ail~~~i~p~~  117 (139)
                      .++.++..|++
T Consensus       185 ~~~~~~~~~~~  195 (398)
T TIGR00895       185 LLLLMRFLPES  195 (398)
T ss_pred             HHHHHHhCCCC
Confidence            55555545443

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=94.87  E-value=0.064  Score=44.78  Aligned_cols=72  Identities=7%  Similarity=0.075  Sum_probs=48.9

Q ss_pred             hHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCC--CchhHHHHHHHHHHHHHHHhhhcccCCC
Q 038309           45 FAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGG--GNMPAFMVGAVAAALSGIVALTLLPSTT  118 (139)
Q Consensus        45 yAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg--~~~~A~v~ggv~~liaail~~~i~p~~~  118 (139)
                      .+++.+..|+  +.+|-++|+.|+..-+-+.+....+|.+.+..++  .....+.+.++..+++.+.......++|
T Consensus       319 ~~~~~~~~p~--~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  392 (400)
T PRK11646        319 ETLSASLADA--RARGSYMGFSRLGLALGGAIGYIGGGWLFDLGKALNQPELPWMMLGIIGLITLLALYWQFSQKR  392 (400)
T ss_pred             HHHHHhcCCc--ccchhhhhHHHHHHHHHHHhcccchHHHHHHHhhcCCcchHHHHHHHHHHHHHHHHHHHHhhch
Confidence            4566667776  6799999999999999999998888887766442  2234555566666666655444333333

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=94.84  E-value=0.11  Score=41.48  Aligned_cols=88  Identities=17%  Similarity=0.063  Sum_probs=62.0

Q ss_pred             HHHHHHHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhh---cchhhhcCCCchhHHHHHHHH
Q 038309           26 ALAIFTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLS---GPFDAVCGGGNMPAFMVGAVA  102 (139)
Q Consensus        26 al~lf~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~---G~~~~lfgg~~~~A~v~ggv~  102 (139)
                      -++...+.|+..+..+..-++++++..++  +++|..+|++|....+-+++..+.+   +.+...  .+-...+.+.++.
T Consensus       130 ~~~~r~l~G~~~~~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~--~~w~~~f~~~~~~  205 (481)
T TIGR00879       130 LIVGRVLLGIGVGIASALVPMYLSEIAPK--ALRGALTSLYQLAITFGILVAYGFGSGKVSLNNT--LGWRIPLGLQLIP  205 (481)
T ss_pred             HHHHHHHHHhhhhHHHhHHHHHHHccCCh--hhhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCC--ccHHHHHHHHHHH
Confidence            34455667777888888888888998887  6789999999999998888877755   332221  2334567777777


Q ss_pred             HHHHHHHhhhcccCC
Q 038309          103 AALSGIVALTLLPST  117 (139)
Q Consensus       103 ~liaail~~~i~p~~  117 (139)
                      .++..++.+++.++|
T Consensus       206 ~~~~~~~~~~l~~~~  220 (481)
T TIGR00879       206 AGLLFLGLFFLPESP  220 (481)
T ss_pred             HHHHHHHHhcCCCCh
Confidence            777666666665544

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK09528 lacY galactoside permease; Reviewed

Probab=94.81  E-value=0.16  Score=42.04  Aligned_cols=91  Identities=12%  Similarity=0.103  Sum_probs=52.0

Q ss_pred             chHHHHHhhchhHhhhhhccCCCCCceeeech-hhhhhhhHHHHHHhhhcchhhhcCCCchhHHHHHHHHHHHHHHHhhh
Q 038309           34 GIPQAITFSVPFAMASIFSRTSAAGQGLSLGV-LNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAALSGIVALT  112 (139)
Q Consensus        34 GIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGI-fN~~IVIPQii~sl~~G~~~~lfgg~~~~A~v~ggv~~liaail~~~  112 (139)
                      |+..+.....-++.+.+..++  +..+...++ +|++-.+..++.+...|.+.+.+|  -..++.+.++..++..++.++
T Consensus       326 g~~~~~~~~~~~~~~~~~~~~--~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G--~~~~f~~~~~~~~i~~~~~~~  401 (420)
T PRK09528        326 AFEVPFLLVGVFKYITLNFDV--RLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIG--FQGTYLILGGIVLLFTLISVF  401 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHcCc--cceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhC--chHHHHHHHHHHHHHHHHHHH
Confidence            333333333334455566666  345544444 898888888888888888776665  445666555555555555554


Q ss_pred             cccCCC--CCCCCCcccc
Q 038309          113 LLPSTT--ADVPPPITEA  128 (139)
Q Consensus       113 i~p~~~--~~~~~~~~~~  128 (139)
                      ..++++  .+-+|.++|+
T Consensus       402 ~~~~~~~~~~~~~~~~~~  419 (420)
T PRK09528        402 TLSGDRELSLLRRQVPEA  419 (420)
T ss_pred             HhcCCchhhHHHhhCccc
Confidence            433223  3445555553

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=94.78  E-value=0.068  Score=50.43  Aligned_cols=83  Identities=19%  Similarity=0.297  Sum_probs=60.8

Q ss_pred             HHHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCCCchhHHHHHHHHHHHHHHH
Q 038309           30 FTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAALSGIV  109 (139)
Q Consensus        30 f~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~~~~A~v~ggv~~liaail  109 (139)
                      ++++|+..+...+..++++++..|.  +.+|..+|+.|...-+-.++..+.+|.+...   .....|++.++.+++++++
T Consensus       655 ~~l~g~~~~~~~~~~~a~~aEl~Pt--~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~---~~~~pf~i~a~~lll~~ll  729 (742)
T TIGR01299       655 LCLFGGLSIAAWNALDVLTVELYPS--DKRATAFGFLNALCKAAAVLGILIFGSFVGI---TKAAPILFASAALACGGLL  729 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hhHHHHHHHHHHHHHHHHH
Confidence            4455665566667788889999998  5689999999999988888888777765443   2344566777788888888


Q ss_pred             hhhcccCCC
Q 038309          110 ALTLLPSTT  118 (139)
Q Consensus       110 ~~~i~p~~~  118 (139)
                      ++++ |+.+
T Consensus       730 ~~~L-PET~  737 (742)
T TIGR01299       730 ALKL-PDTR  737 (742)
T ss_pred             HHhC-CCCc
Confidence            7765 5433

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=94.77  E-value=0.15  Score=40.83  Aligned_cols=86  Identities=17%  Similarity=0.184  Sum_probs=56.8

Q ss_pred             HHHHHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCCCchhHHHHHHHHHHHHH
Q 038309           28 AIFTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAALSG  107 (139)
Q Consensus        28 ~lf~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~~~~A~v~ggv~~liaa  107 (139)
                      +...+.|+..+.....-.+++++..++  +++|..+|+.+....+-.++..+.++.+.+.++  -...+.+.++..++..
T Consensus        84 ~~~~l~g~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~  159 (377)
T PRK11102         84 YMRFLHGLAAAAASVVINALMRDMFPK--EEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFS--WHAIFWVLALAAILAA  159 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--hHHHHHHHHHHHHHHH
Confidence            344556776666666666777887776  568999999998887777777666665544332  3346666666666666


Q ss_pred             HHhhhcccCC
Q 038309          108 IVALTLLPST  117 (139)
Q Consensus       108 il~~~i~p~~  117 (139)
                      ++.++..|+.
T Consensus       160 ~~~~~~~~~~  169 (377)
T PRK11102        160 ALVFFFIPET  169 (377)
T ss_pred             HHHHHhCCcc
Confidence            6665544443

>PRK10091 MFS transport protein AraJ; Provisional

Probab=94.77  E-value=0.085  Score=43.23  Aligned_cols=87  Identities=15%  Similarity=0.056  Sum_probs=57.3

Q ss_pred             HHHHHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCCCchhHHHHHHHHHHHHH
Q 038309           28 AIFTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAALSG  107 (139)
Q Consensus        28 ~lf~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~~~~A~v~ggv~~liaa  107 (139)
                      +.....|+..+.......+++++..++  ++++..+|+++....+-+.+....++.+.+.+  +-..++.+.++..++..
T Consensus        96 ~~r~l~G~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~--gwr~~f~~~~~~~~~~~  171 (382)
T PRK10091         96 IGRLVSGFPHGAFFGVGAIVLSKIIKP--GKVTAAVAGMVSGMTVANLLGIPLGTYLSQEF--SWRYTFLLIAVFNIAVL  171 (382)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHhCCh--HHhhHHHHHHHHHHHHHHHHhccHHHHHhhhc--cHHHHHHHHHHHHHHHH
Confidence            344567777777666666777777776  56788899888877777766555455443332  34457777777777666


Q ss_pred             HHhhhcccCCC
Q 038309          108 IVALTLLPSTT  118 (139)
Q Consensus       108 il~~~i~p~~~  118 (139)
                      +..++..|+.+
T Consensus       172 ~~~~~~lp~~~  182 (382)
T PRK10091        172 ASIYFWVPDIR  182 (382)
T ss_pred             HHHHHhCCCCC
Confidence            66666566544

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=94.70  E-value=0.089  Score=45.17  Aligned_cols=93  Identities=14%  Similarity=-0.017  Sum_probs=68.1

Q ss_pred             HHHHHHHHHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCC-------------
Q 038309           24 VGALAIFTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGG-------------   90 (139)
Q Consensus        24 ~~al~lf~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg-------------   90 (139)
                      ...++...+.|+..+..+....+++++..|+  +.+|..+++.+.+..+-+++..+....+...+.+             
T Consensus       116 ~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~--~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (502)
T TIGR00887       116 ATLCFWRFWLGVGIGGDYPLSAIITSEFATK--KWRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTG  193 (502)
T ss_pred             HHHHHHHHHHHHHHhhhhHHHHHHHHHhcCh--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccc
Confidence            3455666788999999999999999999999  6789999999999988887776654443321211             


Q ss_pred             --------CchhHHHHHHHHHHHHHHHhhhcccCCC
Q 038309           91 --------GNMPAFMVGAVAAALSGIVALTLLPSTT  118 (139)
Q Consensus        91 --------~~~~A~v~ggv~~liaail~~~i~p~~~  118 (139)
                              +=...+.++++..++..++.+++.++|+
T Consensus       194 ~~~~~~~~~WR~~~~~~~ip~~i~~~~~~~lpESpr  229 (502)
T TIGR00887       194 SCVPAVDYMWRILIGFGAVPALLALYFRLTIPETPR  229 (502)
T ss_pred             cccchhcccHHHHHHHHHHHHHHHHHHHHhCCCCHH
Confidence                    2233667788888777777666766665

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=94.59  E-value=0.073  Score=44.94  Aligned_cols=72  Identities=17%  Similarity=0.082  Sum_probs=44.5

Q ss_pred             hHhhhhhccCCCCCceeeechhhhhhhhHHHH-HHhhhcchhhhcCCCchhHHHHHHHHHHHHHHHhhhcccCCCCC
Q 038309           45 FAMASIFSRTSAAGQGLSLGVLNLAIVVPQML-VSLLSGPFDAVCGGGNMPAFMVGAVAAALSGIVALTLLPSTTAD  120 (139)
Q Consensus        45 yAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii-~sl~~G~~~~lfgg~~~~A~v~ggv~~liaail~~~i~p~~~~~  120 (139)
                      ++++.+..|+  +..|..+|++|.+-.+-..+ ....+|.+.+.+|  ...+|.+.++..+++.++.+++.-.++++
T Consensus       369 ~~~~~~~~p~--~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g--~~~~f~~~~~~~~~~~~~~~~~~~~~~~~  441 (452)
T PRK11273        369 GLHALELAPK--KAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG--WDGGFMVMIGGSILAVILLIVVMIGEKRH  441 (452)
T ss_pred             HHHHHHHcCh--hhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhc--chHHHHHHHHHHHHHHHHHHHHhccccch
Confidence            3455567776  67899999998776554433 2444555555555  45566666667777777777444334443

>PRK10054 putative transporter; Provisional

Probab=94.54  E-value=0.1  Score=43.50  Aligned_cols=83  Identities=7%  Similarity=-0.024  Sum_probs=52.5

Q ss_pred             HHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCCCchhHHHHHHHHHHHHHHHh
Q 038309           31 TVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAALSGIVA  110 (139)
Q Consensus        31 ~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~~~~A~v~ggv~~liaail~  110 (139)
                      .+.|..++.....=.+..++..++  +++|..+|+.+...-+-.++....++.+.+ +  +-...|.+.+++.+++.+++
T Consensus       104 ~~~g~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~lg~~igp~l~~~l~~-~--g~~~~f~~~~~~~~i~~i~~  178 (395)
T PRK10054        104 ALINCAYSVFSTVLKAWFADNLSS--TSKTKIFSLNYTMLNIGWTVGPPLGTLLVM-Q--SINLPFWLAAICSAFPLVFI  178 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCH--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h--ccCcHHHHHHHHHHHHHHHH
Confidence            344555444433334555566555  567888898888887777777666666543 3  34457777888888887776


Q ss_pred             hhcccCCC
Q 038309          111 LTLLPSTT  118 (139)
Q Consensus       111 ~~i~p~~~  118 (139)
                      .+..|+++
T Consensus       179 ~~~~~~~~  186 (395)
T PRK10054        179 QIWVQRSE  186 (395)
T ss_pred             HHHHhccc
Confidence            66555444

>PRK03893 putative sialic acid transporter; Provisional

Probab=94.20  E-value=0.18  Score=42.29  Aligned_cols=66  Identities=12%  Similarity=0.055  Sum_probs=42.5

Q ss_pred             HhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCCCchhHH-HHHHHHHHHHHHHhhhccc
Q 038309           46 AMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAF-MVGAVAAALSGIVALTLLP  115 (139)
Q Consensus        46 Am~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~~~~A~-v~ggv~~liaail~~~i~p  115 (139)
                      +++++..++  +++|..+|+++.+..+-+.+..+.+|.+.+.+|-+  .++ ..+++..+++.++..+..|
T Consensus       389 ~~~~~~~~~--~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~~  455 (496)
T PRK03893        389 KLIGGYFDT--EQRAAGLGFTYNVGALGGALAPILGALIAQRLDLG--TALASLSFSLTFVVILLIGLDMP  455 (496)
T ss_pred             HHHHhhCCH--HHhhcccchhhhhhhHHHHHHHHHHHHHhccCChH--HHHHHHHHHHHHHHHHHHHhcCc
Confidence            556677776  57899999999999988888888888776655533  233 3333344444444434333

>TIGR00883 2A0106 metabolite-proton symporter

Probab=94.20  E-value=0.086  Score=41.20  Aligned_cols=83  Identities=13%  Similarity=0.085  Sum_probs=52.7

Q ss_pred             HHHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCCC------chhHHHHHHHHH
Q 038309           30 FTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGG------NMPAFMVGAVAA  103 (139)
Q Consensus        30 f~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~------~~~A~v~ggv~~  103 (139)
                      -.+.|+..+...+.-.+++++..++  +++|.++++.+....+-+++..+.++.+...++++      -...+.+.++..
T Consensus       103 r~l~G~~~~~~~~~~~~~~~~~~~~--~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~  180 (394)
T TIGR00883       103 RLIQGFSLGGEWGGAALYLAEYAPP--GKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWGWRIPFLVSAVLV  180 (394)
T ss_pred             HHHHHhhccccccccHHHhhhcCCc--ccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhhccchHHHHHHHHHHH
Confidence            3556666666666666778888777  67899999999888888777776555544433322      234555666665


Q ss_pred             HHHHHHhhhcc
Q 038309          104 ALSGIVALTLL  114 (139)
Q Consensus       104 liaail~~~i~  114 (139)
                      +++-++...+.
T Consensus       181 ~~~~~~~~~~~  191 (394)
T TIGR00883       181 LIGLYLRRNLE  191 (394)
T ss_pred             HHHHHHHHhcC
Confidence            55544433333

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>TIGR00899 2A0120 sugar efflux transporter

Probab=94.15  E-value=0.2  Score=39.59  Aligned_cols=71  Identities=20%  Similarity=0.196  Sum_probs=42.4

Q ss_pred             HhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCCCchhHHHHHHHHHHHHHHHhhhcccCCC
Q 038309           46 AMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAALSGIVALTLLPSTT  118 (139)
Q Consensus        46 Am~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~~~~A~v~ggv~~liaail~~~i~p~~~  118 (139)
                      ++.....++++++.+.++|+.+....+-+++....++.+.+.+  +-...+.+.++..++..++.++..|+++
T Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~--~~~~~f~~~~~~~~~~~~~~~~~~~~~~  180 (375)
T TIGR00899       110 ALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALGF--GFTVMFLTAALAFVLCGVLVWLFLPSYP  180 (375)
T ss_pred             HHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhc--ccHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence            4445555554333334467766666666666555555554433  3446777888888888887776555543

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=94.14  E-value=0.24  Score=46.12  Aligned_cols=59  Identities=15%  Similarity=0.135  Sum_probs=44.7

Q ss_pred             HHHHHHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhh
Q 038309           27 LAIFTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAV   87 (139)
Q Consensus        27 l~lf~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~l   87 (139)
                      +++.++.|+.-+.....-+++++...++  ++.|..+|+.+....+=.++..+.+|.+...
T Consensus       107 ~~~r~l~G~~~~~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~  165 (1146)
T PRK08633        107 FAVTFLLGAQSAIYSPAKYGIIPELVGK--ENLSRANGLLEAFTIVAILAGTALFSFLFES  165 (1146)
T ss_pred             HHHHHHHHHHHHhhchHHHhhhHHhcCc--ccchhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3344556776666666667888899887  6789999999999888888877777776554

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=94.13  E-value=0.12  Score=41.93  Aligned_cols=87  Identities=16%  Similarity=0.134  Sum_probs=57.3

Q ss_pred             HHHHHHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCCCchhHHHHHHHHHHHH
Q 038309           27 LAIFTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAALS  106 (139)
Q Consensus        27 l~lf~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~~~~A~v~ggv~~lia  106 (139)
                      ++...+.|+..+.......+++++..++  ++.|..+|+++....+-..+..+.++.+.+.+  +-...+.+.++..++.
T Consensus       107 ~~~~~l~G~~~~~~~~~~~~~~~~~~~~--~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~  182 (406)
T PRK11551        107 LVARLLTGVGLGGALPNLIALTSEAVGP--RLRGTAVSLMYCGVPFGGALASVIGVLAAGDA--AWRHIFYVGGVGPLLL  182 (406)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHcCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc--CHHHHHHHHHHHHHHH
Confidence            4455667887777777778888888877  57899999999888777776665544433322  2234566666666666


Q ss_pred             HHHhhhcccCC
Q 038309          107 GIVALTLLPST  117 (139)
Q Consensus       107 ail~~~i~p~~  117 (139)
                      .++.++..|++
T Consensus       183 ~~~~~~~l~~~  193 (406)
T PRK11551        183 VPLLMRWLPES  193 (406)
T ss_pred             HHHHHHhCCCC
Confidence            65555544443

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=94.07  E-value=0.17  Score=42.52  Aligned_cols=83  Identities=16%  Similarity=0.071  Sum_probs=50.1

Q ss_pred             HhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCCCchhHHHHHHHHHHHHHHHhh
Q 038309           32 VLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAALSGIVAL  111 (139)
Q Consensus        32 ~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~~~~A~v~ggv~~liaail~~  111 (139)
                      +.|+..+..+....+.+++..|+  +++|..+|+.|...-+=.++.....+.+.... .+-..+|.+.+++.++.+++.+
T Consensus       127 l~g~~~g~~~~~~~~~i~~~~~~--~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~-~~w~~~f~~~~~~~~i~~~~~~  203 (438)
T TIGR00712       127 LNGWFQGMGWPPCGRTMVHWWSQ--SERGTIVSIWNCAHNIGGGIPPLLVLLGMAWF-NDWHAALYFPAICAIIVALFAF  203 (438)
T ss_pred             HHHHHhhcchHHHHHHHHHhcCc--ccchhHHHHHHHHHHhHhHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHHHH
Confidence            34554444444445566666776  67999999999887666555543333222211 2234578887887777776666


Q ss_pred             hcccCC
Q 038309          112 TLLPST  117 (139)
Q Consensus       112 ~i~p~~  117 (139)
                      ++.|++
T Consensus       204 ~~~~~~  209 (438)
T TIGR00712       204 AMMRDT  209 (438)
T ss_pred             HhccCC
Confidence            555443

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PRK11663 regulatory protein UhpC; Provisional

Probab=94.04  E-value=0.13  Score=43.16  Aligned_cols=64  Identities=20%  Similarity=0.206  Sum_probs=46.7

Q ss_pred             hhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCCCchhHHHHHHHHHHHHHHHhhhcc
Q 038309           47 MASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAALSGIVALTLL  114 (139)
Q Consensus        47 m~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~~~~A~v~ggv~~liaail~~~i~  114 (139)
                      .+++..++  +..|..+|+.|.+.-+-+.+.....|.+.+.+|  -..++.+.+++++++++.+++..
T Consensus       361 ~~~~~~~~--~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g--~~~~f~~~~~~~~~~~~~~~~~~  424 (434)
T PRK11663        361 AAAECSHK--EAAGAATGFVGLFAYLGAALSGYPLAKVLEIWH--WTGFFVVISIAAGISALLLLPFL  424 (434)
T ss_pred             HHHhcccH--hhHHhHHHHHHHHHHHHHHHhcccHHHHHHhcc--cHHHHHHHHHHHHHHHHHHHHHH
Confidence            34454444  578999999999999988888777777666654  55677777777777777666544

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=93.97  E-value=0.2  Score=42.15  Aligned_cols=86  Identities=12%  Similarity=0.074  Sum_probs=55.7

Q ss_pred             HHHHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCCCchhHHHHHHHHHHHHHH
Q 038309           29 IFTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAALSGI  108 (139)
Q Consensus        29 lf~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~~~~A~v~ggv~~liaai  108 (139)
                      .-.+.|+.-+....+.|+++.+..++  ++.+-.+|+++...-+-..+..+.++.+.+.+  +-...|.+-++..+++.+
T Consensus       110 ~r~l~Gi~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~--gw~~~f~~~~~~~~i~~~  185 (413)
T PRK15403        110 ARFIQGTSICFIATVGYVTVQEAFGQ--TKGIKLMAIITSIVLVAPIIGPLSGAALMHFV--HWKVLFAIIAVMGLIAFV  185 (413)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHH
Confidence            33455666555556667777777666  45677788888887777777666666655443  234567777777777777


Q ss_pred             HhhhcccCCC
Q 038309          109 VALTLLPSTT  118 (139)
Q Consensus       109 l~~~i~p~~~  118 (139)
                      +.++..|+.+
T Consensus       186 ~~~~~lp~~~  195 (413)
T PRK15403        186 GLLLAMPETV  195 (413)
T ss_pred             HHHHhCCCCc
Confidence            6665556544

>TIGR00898 2A0119 cation transport protein

Probab=93.87  E-value=0.1  Score=44.02  Aligned_cols=84  Identities=8%  Similarity=0.028  Sum_probs=60.5

Q ss_pred             HHHHHHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCCCchhHHHHHHHHHHHH
Q 038309           27 LAIFTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAALS  106 (139)
Q Consensus        27 l~lf~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~~~~A~v~ggv~~lia  106 (139)
                      ++...+.|+..+..+...++++++..++  +++|..+++.+++..+-.++..+.++.+.+     -...+.+.++..++.
T Consensus       184 ~~~r~l~G~~~~~~~~~~~~~~~e~~~~--~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~-----wr~~~~~~~i~~~~~  256 (505)
T TIGR00898       184 LVFRLLVGMGIGGIWVQAVVLNTEFLPK--KQRAIVGTLIQVFFSLGLVLLPLVAYFIPD-----WRWLQLAVSLPTFLF  256 (505)
T ss_pred             HHHHHHHHhhccchHHHHHHHhheecCh--hhhHHHHHHHHHHHHHHHHHHHHHHHHhhH-----HHHHHHHHHHHHHHH
Confidence            4456678888899999999999999988  578888998888887777766654444322     234566677777777


Q ss_pred             HHHhhhcccCC
Q 038309          107 GIVALTLLPST  117 (139)
Q Consensus       107 ail~~~i~p~~  117 (139)
                      .++.+++.++|
T Consensus       257 ~~~~~~~~esp  267 (505)
T TIGR00898       257 FLLSWFVPESP  267 (505)
T ss_pred             HHHHHhcCCCh
Confidence            77776655544

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=93.66  E-value=0.22  Score=40.50  Aligned_cols=86  Identities=15%  Similarity=0.207  Sum_probs=53.3

Q ss_pred             HHHHHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCCCchhHHHHHHHHHHHHH
Q 038309           28 AIFTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAALSG  107 (139)
Q Consensus        28 ~lf~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~~~~A~v~ggv~~liaa  107 (139)
                      +.....|+.++....+..++.....++  ++.+..+++.|+...+-+++....++.+.+.++  -..++.+.++..++..
T Consensus       101 ~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g--~~~~f~~~~~~~~~~~  176 (394)
T PRK11652        101 AASAIQGLGTGVGGVMARTLPRDLYEG--TQLRHANSLLNMGILVSPLLAPLIGGLLTTLFG--WRACYLFLLLLGAGVT  176 (394)
T ss_pred             HHHHHHHhhhhHHHHHHHHHHHHhcCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC--hHHHHHHHHHHHHHHH
Confidence            344556777776666666666666665  567888888888887777666665665544332  3445666666665555


Q ss_pred             HHhhhcccCC
Q 038309          108 IVALTLLPST  117 (139)
Q Consensus       108 il~~~i~p~~  117 (139)
                      ++..+..|++
T Consensus       177 ~~~~~~~~~~  186 (394)
T PRK11652        177 FSMARWMPET  186 (394)
T ss_pred             HHHHHhCCcc
Confidence            5554444443

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=93.63  E-value=0.3  Score=37.96  Aligned_cols=84  Identities=14%  Similarity=0.180  Sum_probs=46.7

Q ss_pred             HHHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCCCchhHHHHHHHHHHHHHHH
Q 038309           30 FTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAALSGIV  109 (139)
Q Consensus        30 f~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~~~~A~v~ggv~~liaail  109 (139)
                      ..+.|+..+..+......+.+..+   +++|..+|+++...-+-.++.....+.+.+.  .+-...+.+.++..++..++
T Consensus        98 ~~~~g~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~--~~~~~~f~~~~~~~~~~~~~  172 (377)
T TIGR00890        98 YGLASAGVGIAYGIALNTAVKWFP---DKRGLASGIIIGGYGLGSFILSPLITSVINL--EGVPAAFIYMGIIFLLVIVL  172 (377)
T ss_pred             HHHHhHHHHHHHHhHHHHHHHHcC---cccHHHHHHHHHhcchhHhHHHHHHHHHHhc--ccHHHHHHHHHHHHHHHHHH
Confidence            335666666655444454555544   3588899998887666554432222222111  12344667777777777666


Q ss_pred             hhhcccCCC
Q 038309          110 ALTLLPSTT  118 (139)
Q Consensus       110 ~~~i~p~~~  118 (139)
                      .++..++++
T Consensus       173 ~~~~~~~~~  181 (377)
T TIGR00890       173 GAFLIGYPP  181 (377)
T ss_pred             HHHheecCc
Confidence            665544443

>TIGR00898 2A0119 cation transport protein

Probab=93.60  E-value=0.23  Score=41.95  Aligned_cols=78  Identities=17%  Similarity=0.146  Sum_probs=52.3

Q ss_pred             HHHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCCCchhHHHHHHHHHHHHHHH
Q 038309           30 FTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAALSGIV  109 (139)
Q Consensus        30 f~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~~~~A~v~ggv~~liaail  109 (139)
                      +.+.++.....+.+.|+++++..|.  +.++..+|+.|.+-.+-+++.....+ .++.   +....+.+-+++.++++++
T Consensus       417 ~~~~~~~~~~~~~~~~~~~~e~~p~--~~r~~~~g~~~~~~~ig~~i~p~i~~-~~~~---~~~~~~~~~~~~~~~~~~~  490 (505)
T TIGR00898       417 AVLGKFGITSAFQMVYLYTAELYPT--VVRNLGVGVCSTMARVGSIISPFLVY-LGEK---WLFLPLVLFGGLALLAGIL  490 (505)
T ss_pred             HHHHHHHHHHHHHHHHHHhcccccH--HHHhhhHhHHHHHHHHHHHHHhHHHH-HHHH---HHhhHHHHHHHHHHHHHHH
Confidence            3334444455566777888888887  56788899999998888888777655 4432   2334555566666666776


Q ss_pred             hhhc
Q 038309          110 ALTL  113 (139)
Q Consensus       110 ~~~i  113 (139)
                      ++++
T Consensus       491 ~~~l  494 (505)
T TIGR00898       491 TLFL  494 (505)
T ss_pred             HHcC
Confidence            6654

>PRK10504 putative transporter; Provisional

Probab=93.56  E-value=0.16  Score=42.42  Aligned_cols=90  Identities=17%  Similarity=0.146  Sum_probs=63.4

Q ss_pred             HHHHHHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCCCchhHHHHHHHHHHHH
Q 038309           27 LAIFTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAALS  106 (139)
Q Consensus        27 l~lf~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~~~~A~v~ggv~~lia  106 (139)
                      ++..++.|+..+.....-++++++..++  ++++..+|+.+...-+-..+....+|.+.+.+  +-..+|.+...+.+++
T Consensus       102 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~--gw~~~f~~~~~~~~l~  177 (471)
T PRK10504        102 LLARVLQGVGGAMMVPVGRLTVMKIVPR--EQYMAAMTFVTLPGQVGPLLGPALGGLLVEYA--SWHWIFLINIPVGIIG  177 (471)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHcCH--HHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhc--cHHHHHHHHHHHHHHH
Confidence            3445677777777777777888888887  56788899998877777777666666655443  2345777777777777


Q ss_pred             HHHhhhcccCCCCC
Q 038309          107 GIVALTLLPSTTAD  120 (139)
Q Consensus       107 ail~~~i~p~~~~~  120 (139)
                      .++.....|+.+.+
T Consensus       178 ~~~~~~~~~~~~~~  191 (471)
T PRK10504        178 AIATLMLMPNYTMQ  191 (471)
T ss_pred             HHHHHHhCCCcccc
Confidence            77777776665433

>PRK15011 sugar efflux transporter B; Provisional

Probab=93.43  E-value=0.31  Score=40.18  Aligned_cols=68  Identities=13%  Similarity=0.141  Sum_probs=42.3

Q ss_pred             hhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCCCchhHHHHHHHHHHHHHHHhhhcccCCC
Q 038309           49 SIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAALSGIVALTLLPSTT  118 (139)
Q Consensus        49 s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~~~~A~v~ggv~~liaail~~~i~p~~~  118 (139)
                      ....+++++..+.|+|++|...-+=.++....++.+.+.+|  -..+|.+.++..++.++++++..|+.+
T Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~g--w~~~f~~~~~~~~~~~~~~~~~~~~~~  198 (393)
T PRK15011        131 REHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMGFS--FTVMYLSAAVAFIVCGVMVWLFLPSMR  198 (393)
T ss_pred             HHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcC--hHHHHHHHHHHHHHHHHHHHhhcCccC
Confidence            33344433334677788888877777777766666554442  335677777777777777666555543

>TIGR00897 2A0118 polyol permease family

Probab=93.43  E-value=0.33  Score=40.14  Aligned_cols=56  Identities=18%  Similarity=0.230  Sum_probs=44.3

Q ss_pred             CCceeeechhhhhhhhHHHHHHhhhcchhhhcCCCchhHHHHHHHHHHHHHHHhhhcc
Q 038309           57 AGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAALSGIVALTLL  114 (139)
Q Consensus        57 ~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~~~~A~v~ggv~~liaail~~~i~  114 (139)
                      +++|..+|+.|...-+-+.+.....|.+.+.+|  -...+.+.+++.++++++..+++
T Consensus       346 ~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g--~~~~~~~~a~~~~i~~~~~~~~~  401 (402)
T TIGR00897       346 KHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFG--AIGVVWIFAALYVVSAFLTAFIR  401 (402)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc--hHHHHHHHHHHHHHHHHHHHHhc
Confidence            468999999999999999999888888777654  44566677777888887777653

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK11663 regulatory protein UhpC; Provisional

Probab=93.35  E-value=0.22  Score=41.85  Aligned_cols=82  Identities=17%  Similarity=0.175  Sum_probs=50.8

Q ss_pred             HhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCCCchhHHHHHHHHHHHHHHHhh
Q 038309           32 VLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAALSGIVAL  111 (139)
Q Consensus        32 ~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~~~~A~v~ggv~~liaail~~  111 (139)
                      +.|+..+..+..-.+++++..++  +++|..||++|...-+-.++..+..+.+.+.+|  -...+.+.++..++.+++..
T Consensus       120 l~g~~~g~~~~~~~~~~~~~~~~--~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~g--w~~~f~~~~i~~~~~~~~~~  195 (434)
T PRK11663        120 LNAFFQGWGWPVCAKLLTAWYSR--TERGGWWAIWNTAHNVGGALIPLVVGAIALHYG--WRYGMMIAGIIAIVVGLFLC  195 (434)
T ss_pred             HHHHHHHccchHHHHHHHHhCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc--HHHHHHHHHHHHHHHHHHHH
Confidence            34555554444556777777776  578999999998887777776666666554433  34456665655554444444


Q ss_pred             -hcccCC
Q 038309          112 -TLLPST  117 (139)
Q Consensus       112 -~i~p~~  117 (139)
                       +++++|
T Consensus       196 ~~~~~~p  202 (434)
T PRK11663        196 WRLRDKP  202 (434)
T ss_pred             HHcCCCH
Confidence             444443

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=93.32  E-value=0.21  Score=41.58  Aligned_cols=84  Identities=14%  Similarity=0.180  Sum_probs=57.2

Q ss_pred             HHHHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCCCchhHHHHHHHHHHHHHH
Q 038309           29 IFTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAALSGI  108 (139)
Q Consensus        29 lf~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~~~~A~v~ggv~~liaai  108 (139)
                      ...+.|+.-|..+..-.+++.+..|+  ++.+-.+|+++....+-+++-...+|.+.+..   -...+.+.+.+.+++.+
T Consensus        94 ~r~l~G~~~a~~~pa~~a~i~~~~~~--~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~~---~~~~~~i~~~~~~~~~~  168 (393)
T PRK11195         94 AYGLVGIGAAAYSPAKYGILTELLPG--EKLVKANGWMEGSTIAAILLGTVLGGALADPH---AEAALAVCALIYLLAAL  168 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence            34567888888888888999999998  67999999999888888888877788766543   22233333333444443


Q ss_pred             HhhhcccCCC
Q 038309          109 VALTLLPSTT  118 (139)
Q Consensus       109 l~~~i~p~~~  118 (139)
                      + .+..|+++
T Consensus       169 ~-~~~l~~~~  177 (393)
T PRK11195        169 F-NLFIPRLG  177 (393)
T ss_pred             H-HhcCCCCc
Confidence            3 34445433

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=93.30  E-value=0.14  Score=42.93  Aligned_cols=84  Identities=12%  Similarity=0.118  Sum_probs=57.6

Q ss_pred             HHHHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCCCchhHHHHHHHHHHHHHH
Q 038309           29 IFTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAALSGI  108 (139)
Q Consensus        29 lf~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~~~~A~v~ggv~~liaai  108 (139)
                      .-.+.|+..+.....-.+++++..|+  +++|.++|+++....+-+++....++.+.+.+. +-...|.+.++..++..+
T Consensus       137 ~r~~~G~~~~~~~~~~~~~~~~~~~~--~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~-gw~~~f~i~~~~~~~~~~  213 (465)
T TIGR00894       137 CRVIQGLAQGSVSPATHKIIVKWAPP--KERSRLLGMSTSGFQLGTFIFLPISGWLCESWG-GWPMIFYVFGIVGCAWSL  213 (465)
T ss_pred             HHHHHHHhcccchhhHHHHHHhcCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-CCCeehhhhhHHHHHHHH
Confidence            34556777777766666777888877  578999999999988888887776666544321 223466666777666666


Q ss_pred             Hhhhccc
Q 038309          109 VALTLLP  115 (139)
Q Consensus       109 l~~~i~p  115 (139)
                      ++++..+
T Consensus       214 ~~~~~~~  220 (465)
T TIGR00894       214 LWFVFPA  220 (465)
T ss_pred             HHHHHhc
Confidence            6665443

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=93.16  E-value=0.24  Score=41.50  Aligned_cols=87  Identities=16%  Similarity=0.160  Sum_probs=58.5

Q ss_pred             HHHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhh---cC-CCchhHHHHHHHHHHH
Q 038309           30 FTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAV---CG-GGNMPAFMVGAVAAAL  105 (139)
Q Consensus        30 f~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~l---fg-g~~~~A~v~ggv~~li  105 (139)
                      -.+.|+..+..+..-.+++++..++  +++|..+|+++...-+-+++..+.++.+...   .+ -+-..+|.+.++..++
T Consensus       103 r~l~G~~~~~~~~~~~~~~~~~~~~--~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~  180 (412)
T TIGR02332       103 RILVGIAEAGFLPGILLYLTFWFPA--YFRARANALFMIAMPVTMALGLILSGYILALDGLMALKGWQWLFLLEGFPSVI  180 (412)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHcCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHH
Confidence            3456777777666566777888887  5789999999998888888777766654321   11 1345677777777766


Q ss_pred             HHHHhhhcccCCC
Q 038309          106 SGIVALTLLPSTT  118 (139)
Q Consensus       106 aail~~~i~p~~~  118 (139)
                      .+++.++..|+++
T Consensus       181 ~~~~~~~~~~~~p  193 (412)
T TIGR02332       181 LGVMTWFWLDDSP  193 (412)
T ss_pred             HHHHHhhccCCCc
Confidence            6666655544433

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=93.12  E-value=0.4  Score=39.97  Aligned_cols=84  Identities=17%  Similarity=0.154  Sum_probs=56.2

Q ss_pred             HHHHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCCCchhHHHHHHHHHHHHHH
Q 038309           29 IFTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAALSGI  108 (139)
Q Consensus        29 lf~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~~~~A~v~ggv~~liaai  108 (139)
                      .-.+.|+..+.......+++++..++  ++.|..+|+++...-+-.++....++.+.+.++  -..++.+.++..++..+
T Consensus       114 ~r~l~G~~~g~~~~~~~~~i~~~~~~--~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~g--w~~~f~~~~~l~~~~~l  189 (394)
T PRK10213        114 GRACLGLALGGFWAMSASLTMRLVPP--RTVPKALSVIFGAVSIALVIAAPLGSFLGELIG--WRNVFNAAAVMGVLCIF  189 (394)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHcCH--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC--HHHHHHHHHHHHHHHHH
Confidence            34567888888877788888888887  678889999988887777777776776655554  23455555555544444


Q ss_pred             HhhhcccC
Q 038309          109 VALTLLPS  116 (139)
Q Consensus       109 l~~~i~p~  116 (139)
                      +.++..|+
T Consensus       190 ~~~~~~p~  197 (394)
T PRK10213        190 WIIKSLPS  197 (394)
T ss_pred             HHHHHCCC
Confidence            43333343

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=93.00  E-value=0.29  Score=37.41  Aligned_cols=83  Identities=20%  Similarity=0.260  Sum_probs=61.8

Q ss_pred             HHHHHHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCCCchhHHHHHHHHHHHH
Q 038309           27 LAIFTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAALS  106 (139)
Q Consensus        27 l~lf~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~~~~A~v~ggv~~lia  106 (139)
                      ++.....|+..+.....-.+++++..++  ++++..+|+.+....+-+++....++.+.+.++  ....+.+.++..+++
T Consensus        91 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~  166 (352)
T cd06174          91 LVGRFLLGLGGGALYPAAAALIAEWFPP--KERGRALGLFSAGFGLGALLGPLLGGLLAESLG--WRWLFLILAILGLLL  166 (352)
T ss_pred             HHHHHHHHcccccccHhHHHHHHHhCCc--cchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHH
Confidence            3445556777777777777888888887  678999999999999999998887777665533  445677777777777


Q ss_pred             HHHhhhc
Q 038309          107 GIVALTL  113 (139)
Q Consensus       107 ail~~~i  113 (139)
                      .++..+.
T Consensus       167 ~~~~~~~  173 (352)
T cd06174         167 ALLLLFL  173 (352)
T ss_pred             HHHHHHH
Confidence            7766544

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK09528 lacY galactoside permease; Reviewed

Probab=92.96  E-value=0.22  Score=41.20  Aligned_cols=59  Identities=14%  Similarity=0.184  Sum_probs=42.3

Q ss_pred             CCceeeechhhhhhhhHHHHHHhhhcchhhhcCCCchhHHHHHHHHHHHHHHHhhhcccCCC
Q 038309           57 AGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAALSGIVALTLLPSTT  118 (139)
Q Consensus        57 ~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~~~~A~v~ggv~~liaail~~~i~p~~~  118 (139)
                      +++|..+|..+....+-+.+..+.+|.+.+.   +....+.+.++..+++.++.++++++++
T Consensus       137 ~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~---~~~~~f~~~~~~~~~~~~~~~~~~~~~~  195 (420)
T PRK09528        137 RRSGFEYGRARMWGSLGWALCAFIAGILFNI---NPQINFWLGSGSALILLVLLFFAKPDAP  195 (420)
T ss_pred             hhccccchhhHHhhhHHHHHHHHHHHHHHhc---CchHhHHHHHHHHHHHHHHHhccccccc
Confidence            5678899999999888888887777765432   3345677777777777777776665544

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=92.92  E-value=0.33  Score=40.36  Aligned_cols=86  Identities=17%  Similarity=0.171  Sum_probs=53.7

Q ss_pred             HHHhchHHHHHh-hchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchh------hhcCCCchhHHHHHHHH
Q 038309           30 FTVLGIPQAITF-SVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFD------AVCGGGNMPAFMVGAVA  102 (139)
Q Consensus        30 f~~lGIpwAs~l-SmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~------~lfgg~~~~A~v~ggv~  102 (139)
                      +...++.++..+ .+.++++++..|.  +.+|..+|+.+..--+-+++.+...+...      +-+  +...++.+.++.
T Consensus       370 ~~~~~~~~~~~~~~~~~~~~~e~~p~--~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~--~~~~~~~~~~~~  445 (479)
T PRK10077        370 MLFYVAAFAMSWGPVCWVLLSEIFPN--AIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHF--HNGFSYWIYGCM  445 (479)
T ss_pred             HHHHHHHHhccccchhHHHhHhhCCh--hHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhc--cCccHHHHHHHH
Confidence            334444444332 4567888888887  57899999988876667666654443322      222  224566666777


Q ss_pred             HHHHHHHhhhcccCCCC
Q 038309          103 AALSGIVALTLLPSTTA  119 (139)
Q Consensus       103 ~liaail~~~i~p~~~~  119 (139)
                      .++++++.++..|+++.
T Consensus       446 ~~~~~~~~~~~~~e~~~  462 (479)
T PRK10077        446 GVLAALFMWKFVPETKG  462 (479)
T ss_pred             HHHHHHHHHhccccCCC
Confidence            77777777766665543

>PRK15011 sugar efflux transporter B; Provisional

Probab=92.89  E-value=0.54  Score=38.78  Aligned_cols=61  Identities=11%  Similarity=0.074  Sum_probs=43.5

Q ss_pred             hhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCCCchhHHHHHHHHHHHHHHHhhhc
Q 038309           48 ASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAALSGIVALTL  113 (139)
Q Consensus        48 ~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~~~~A~v~ggv~~liaail~~~i  113 (139)
                      ..+..|   ++.|.++|++|.+.-+-+.+.++.+|.+.+.+|  -...+.+++++.+++.++.+++
T Consensus       330 ~~~~~p---~~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g--~~~~~~~~~~~~~~~~~~~~~~  390 (393)
T PRK15011        330 FQDLMP---GQAGSATTLYTNTSRVGWIIAGSLAGIVAEIWN--YHAVFWFALVMIIATLFCLLRI  390 (393)
T ss_pred             HHHhCC---CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hHHHHHHHHHHHHHHHHHHHhh
Confidence            344444   358999999999888888898888888766553  3345566777777766666655

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=92.84  E-value=0.17  Score=47.88  Aligned_cols=89  Identities=12%  Similarity=0.038  Sum_probs=60.2

Q ss_pred             HHHHHHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcC-----------CCchhH
Q 038309           27 LAIFTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCG-----------GGNMPA   95 (139)
Q Consensus        27 l~lf~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfg-----------g~~~~A   95 (139)
                      ++.-.+.|+..+..+.+.++++++..|.  +.+|..+|+++.+..+-.++..+.++.+...+|           .+=...
T Consensus       259 lv~R~l~G~g~g~~~p~~~~~isE~~p~--~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~~~~~g~~~~~~gWR~l  336 (742)
T TIGR01299       259 LFCRLLSGFGIGGAIPIVFSYFAEFLAQ--EKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMGSAYQFHSWRVF  336 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhccccccccccHHHH
Confidence            3345677888899999999999999998  679999999999988877776654333222111           011345


Q ss_pred             HHHHHHHHHHHHHHhhhcccCC
Q 038309           96 FMVGAVAAALSGIVALTLLPST  117 (139)
Q Consensus        96 ~v~ggv~~liaail~~~i~p~~  117 (139)
                      +.++++..+++.++.+++.+.|
T Consensus       337 ~~i~~lp~ll~ll~~~~lPESP  358 (742)
T TIGR01299       337 VIVCAFPCVFAIGALTFMPESP  358 (742)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCH
Confidence            6667777666655555554444

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>TIGR00900 2A0121 H+ Antiporter protein

Probab=92.82  E-value=0.09  Score=40.79  Aligned_cols=63  Identities=13%  Similarity=-0.004  Sum_probs=52.4

Q ss_pred             HHHHHHHHHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhc
Q 038309           24 VGALAIFTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVC   88 (139)
Q Consensus        24 ~~al~lf~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lf   88 (139)
                      ...++.+.+.|+.++.......+++.+..|+  +.+|..+|+.|....+.+.+.+..+|.+.+.+
T Consensus       302 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~~~  364 (365)
T TIGR00900       302 PLFLVLWFAIGVGYGPINVPQGTLLQRRVPA--ELLGRVFGAQFSLSHAAWPLGLILAGPLADHL  364 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            4455667788888888888888999999887  57899999999999999999988888766544

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=92.79  E-value=0.47  Score=44.76  Aligned_cols=57  Identities=11%  Similarity=0.043  Sum_probs=43.7

Q ss_pred             HHHHHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhh
Q 038309           28 AIFTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDA   86 (139)
Q Consensus        28 ~lf~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~   86 (139)
                      +.++++|+..+..+..-++++...+++  +.+|-.+|++|++..+-+.+.++.+|.+..
T Consensus       339 ~~~~~~g~~~~~~~~~~~~~~~~~~p~--~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~  395 (1140)
T PRK06814        339 IDLFGLAAAGGLYIVPLFAALQAWANP--AHRARVIAANNVLNAAFMVAGTIILALLQA  395 (1140)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHhhCCc--ccceeeeHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344556777777666677888888888  679999999999988877777776666543

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=92.65  E-value=0.38  Score=40.40  Aligned_cols=83  Identities=19%  Similarity=0.167  Sum_probs=55.4

Q ss_pred             HHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCCCchhHHHHHHHHHHHHHHHh
Q 038309           31 TVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAALSGIVA  110 (139)
Q Consensus        31 ~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~~~~A~v~ggv~~liaail~  110 (139)
                      .+.|+.-+. +...++.+++..|+  +++|..+|+++....+-.++..+.++++.+.+  +=..+|.+.++..++..+++
T Consensus        87 ~l~G~g~~~-~~~~~~~~~~~~~~--~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~--gWr~~f~~~~~l~~~~~~~~  161 (368)
T TIGR00903        87 LLAALGQPF-LLNAFAPAASQIRE--ERRDLVISLLSFAMYLGIIFALAAGLKIYTAG--GLQLLIIPIAAVAAAGIILV  161 (368)
T ss_pred             HHHHhHhHH-HHHHHHHHHHHcCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc--chHHHHHHHHHHHHHHHHHH
Confidence            344555553 33444556788887  68999999999999999999887777766543  33456666555555556666


Q ss_pred             hhcccCCC
Q 038309          111 LTLLPSTT  118 (139)
Q Consensus       111 ~~i~p~~~  118 (139)
                      ++..|+++
T Consensus       162 ~~~lp~~p  169 (368)
T TIGR00903       162 LAALPALP  169 (368)
T ss_pred             HHHcCCCC
Confidence            65555443

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=92.64  E-value=0.44  Score=38.39  Aligned_cols=67  Identities=24%  Similarity=0.272  Sum_probs=46.1

Q ss_pred             HhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCCCchhHHHHHHHHHHHHHHHhhhcccC
Q 038309           46 AMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAALSGIVALTLLPS  116 (139)
Q Consensus        46 Am~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~~~~A~v~ggv~~liaail~~~i~p~  116 (139)
                      +++....++  +++|..+|+.+....+-+++....+|.+.+.++  -..++.+.++..+++.++.++..++
T Consensus       129 ~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~  195 (408)
T PRK09874        129 ALIATQVPR--NKSGWALGTLSTGGVSGALLGPLAGGLLADSYG--LRPVFFITASVLFLCFLVTLFCIRE  195 (408)
T ss_pred             HHHHHhcCH--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--HHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            445556665  567889999998888888777776666555433  4456777777777777776655544

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=92.55  E-value=0.4  Score=40.19  Aligned_cols=75  Identities=16%  Similarity=0.151  Sum_probs=53.2

Q ss_pred             HHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcC------CCchhHHHHHHHHHH
Q 038309           31 TVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCG------GGNMPAFMVGAVAAA  104 (139)
Q Consensus        31 ~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfg------g~~~~A~v~ggv~~l  104 (139)
                      .+.|+..+..+....+++++..|+  +++|.++++.+....+-.++..+....+..+++      -+=...|.++++..+
T Consensus       132 ~l~G~g~g~~~~~~~~~i~e~~p~--~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~l  209 (432)
T PRK10406        132 LFQGLSVGGEYGTSATYMSEVAVE--GRKGFYASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWGWRIPFALGAVLAV  209 (432)
T ss_pred             HHHHhhhhhhHhhHHHHHHHhCCC--CcccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHH
Confidence            467888888888888999999988  678999999888877777766654444433332      233557777777776


Q ss_pred             HHH
Q 038309          105 LSG  107 (139)
Q Consensus       105 iaa  107 (139)
                      +..
T Consensus       210 l~~  212 (432)
T PRK10406        210 VAL  212 (432)
T ss_pred             HHH
Confidence            653

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=92.22  E-value=0.55  Score=37.17  Aligned_cols=54  Identities=19%  Similarity=0.171  Sum_probs=31.9

Q ss_pred             HHHHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchh
Q 038309           29 IFTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFD   85 (139)
Q Consensus        29 lf~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~   85 (139)
                      ...+.|+..+ .+..-.++++...++  +++|..+|+.+.+..+-..+..+.++++.
T Consensus        97 ~~~~~g~~~~-~~~~~~~~~~~~~~~--~~r~~~~~~~~~~~~~g~~~~~~i~~~l~  150 (366)
T TIGR00886        97 LRLFIGIAGG-SFASCMPWISFFFPK--KIQGTALGLAAGWGNMGGGVAQFVMPPII  150 (366)
T ss_pred             HHHHHHHhch-hhHhHHHHHHHhcCH--hhhhHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence            3444566543 334445667777776  56788888887665555555554444443

>TIGR00805 oat sodium-independent organic anion transporter

Probab=92.20  E-value=0.27  Score=44.96  Aligned_cols=84  Identities=17%  Similarity=0.169  Sum_probs=61.3

Q ss_pred             HHHHHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCCC----------------
Q 038309           28 AIFTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGG----------------   91 (139)
Q Consensus        28 ~lf~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~----------------   91 (139)
                      +.-++.|+.-+..+.+-.+++.+..++  ++.+.|+|+++....+-..+..+.+|.+.+.+.+-                
T Consensus       177 ~~r~l~GiG~~~~~~~~~~~i~d~~~~--~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dpr  254 (633)
T TIGR00805       177 VSQLLRGIGATPIFPLGISYIDDFAKS--KNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPR  254 (633)
T ss_pred             HHHHHHhccCCcchhcCchhhhccCCc--cccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCcc
Confidence            445677777777777777888999988  68999999999999998888877777766554320                


Q ss_pred             ---c-hhHHHHHHHHHHHHHHHhhhc
Q 038309           92 ---N-MPAFMVGAVAAALSGIVALTL  113 (139)
Q Consensus        92 ---~-~~A~v~ggv~~liaail~~~i  113 (139)
                         . ...|++.|+..++.++..+++
T Consensus       255 WiGaWwl~Fli~g~l~~l~~v~l~~~  280 (633)
T TIGR00805       255 WIGAWWIGFLICGGVALLTSIPFFFF  280 (633)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence               0 124777777777777654433

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=92.07  E-value=0.49  Score=44.09  Aligned_cols=82  Identities=18%  Similarity=0.205  Sum_probs=50.3

Q ss_pred             HHHHHHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCCCchhHHHHHHHHHHHH
Q 038309           27 LAIFTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAALS  106 (139)
Q Consensus        27 l~lf~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~~~~A~v~ggv~~lia  106 (139)
                      ++.+.++|+..+.....-++++....++  +.+|..+|+.|++-.+-.++..+.++.+.. ++-+....+.+.+...++.
T Consensus       326 ~~~~~~~g~~~~~~~~~~~~~~~~~~p~--~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~  402 (1146)
T PRK08633        326 LVLFFLFGFSAGLFIVPLNALIQFRAPE--KELGKVLAANNFLQNVGMLLFLALTTLFSG-LGLSPAGLFYLIALVTLIG  402 (1146)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHhhcCCc--cchhhhhHHHHHHHHHHHHHHHHHHHHHHH-hccCHHHHHHHHHHHHHHH
Confidence            3444555665555555556777777777  578999999998887777666555555444 3334444555555555554


Q ss_pred             HHHhh
Q 038309          107 GIVAL  111 (139)
Q Consensus       107 ail~~  111 (139)
                      .++.+
T Consensus       403 ~~~~~  407 (1146)
T PRK08633        403 TLYTL  407 (1146)
T ss_pred             HHHHH
Confidence            44443

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=92.05  E-value=0.55  Score=41.89  Aligned_cols=85  Identities=14%  Similarity=0.091  Sum_probs=65.2

Q ss_pred             HHHHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCCCchhHHHHHHHHHHHHHH
Q 038309           29 IFTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAALSGI  108 (139)
Q Consensus        29 lf~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~~~~A~v~ggv~~liaai  108 (139)
                      +-.++|+..+.+.|.-=+|.+..+|+  ++.+-+.|+++++=-.--++-.+..|.+.+.+| +..+++..=.++++++.+
T Consensus       386 ~a~~~G~~~G~~qs~sRs~~~~LiP~--g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg-~~r~g~~~l~~lf~~gl~  462 (477)
T PF11700_consen  386 LAVLIGLFMGGIQSASRSLFSRLIPP--GREAEFFGLYAITGKASSWLGPLLFGLITDATG-SQRYGFLFLLVLFLIGLI  462 (477)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHhCCC--chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CchhHHHHHHHHHHHHHH
Confidence            34467788888888888999999999  789999999999887777777777788788875 455666666677777766


Q ss_pred             HhhhcccC
Q 038309          109 VALTLLPS  116 (139)
Q Consensus       109 l~~~i~p~  116 (139)
                      +.++++.+
T Consensus       463 ll~~v~~~  470 (477)
T PF11700_consen  463 LLFFVDVE  470 (477)
T ss_pred             HHhhccch
Confidence            66555443

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=92.02  E-value=0.72  Score=37.81  Aligned_cols=85  Identities=19%  Similarity=0.072  Sum_probs=50.0

Q ss_pred             HHHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCCCchhHHHHHHHHHHHHHHH
Q 038309           30 FTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAALSGIV  109 (139)
Q Consensus        30 f~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~~~~A~v~ggv~~liaail  109 (139)
                      ..+.|+.-+....+.++++++..++  ++.+-.+|+.+....+-.++..+.++.+.+.+  +-..++.+.++..+++.+.
T Consensus       108 ~~l~G~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~--~w~~~~~~~~~~~~~~~~~  183 (406)
T PRK15402        108 RFLQGIGLCFIGAVGYAAIQESFEE--ADAIKITALMANVALLAPLLGPLVGAALIHVL--PWRGMFVLFAALAALSFFG  183 (406)
T ss_pred             HHHHHhHhhhHHHHHHHHHHHHhCh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc--CccHHHHHHHHHHHHHHHH
Confidence            3455666666666777878877776  34445566666554444455444445444433  2345666667676777776


Q ss_pred             hhhcccCCC
Q 038309          110 ALTLLPSTT  118 (139)
Q Consensus       110 ~~~i~p~~~  118 (139)
                      .++..|+.+
T Consensus       184 ~~~~~~~~~  192 (406)
T PRK15402        184 LWRAMPETA  192 (406)
T ss_pred             HHHhCCCCC
Confidence            665555443

>PRK12307 putative sialic acid transporter; Provisional

Probab=91.91  E-value=0.2  Score=40.92  Aligned_cols=43  Identities=12%  Similarity=0.063  Sum_probs=32.8

Q ss_pred             hHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcC
Q 038309           45 FAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCG   89 (139)
Q Consensus        45 yAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfg   89 (139)
                      .+++.+..|+  +++|..+|+.+.+--+-+++.....|.+.+.+|
T Consensus       343 ~~~~~~~~p~--~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~~~g  385 (426)
T PRK12307        343 PKFLYDYFPL--EVRGLGTGLIYNLAATSGTFNSMAATWLGITMG  385 (426)
T ss_pred             HHHHHHhCcH--HHHhhhhhHHHHHHhHHHHHHHHHHHHHHHccc
Confidence            3556777777  678999999998888888888777777665544

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=91.71  E-value=0.28  Score=41.60  Aligned_cols=66  Identities=14%  Similarity=0.044  Sum_probs=44.7

Q ss_pred             HhhhhhccCCCCCceeeechhhhhhhh-HHHHHHhhhcchhh-hcC---------CCchhHHHHHHHHHHHHHHHhhhc
Q 038309           46 AMASIFSRTSAAGQGLSLGVLNLAIVV-PQMLVSLLSGPFDA-VCG---------GGNMPAFMVGAVAAALSGIVALTL  113 (139)
Q Consensus        46 Am~s~~i~~~g~~~GlyMGIfN~~IVI-PQii~sl~~G~~~~-lfg---------g~~~~A~v~ggv~~liaail~~~i  113 (139)
                      +.+.+..|+  +..|..+|+.|.+.-+ ...+.....|.+.+ ..+         .+-..+|.+-+++++++.++.+++
T Consensus       372 ~~~~~~~p~--~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~  448 (467)
T PRK09556        372 VAAVGFVPK--KAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCICLMAIV  448 (467)
T ss_pred             HHHHhhcch--hhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHHHHHHHHHHHHH
Confidence            455577777  5789999999988665 66666665555544 111         234567777788888887777755

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=91.69  E-value=0.58  Score=42.03  Aligned_cols=92  Identities=24%  Similarity=0.242  Sum_probs=59.4

Q ss_pred             HHHHHHHHHhchHHHHHhhchhHhhhhhccCCCCCceeeechh----hhhhhhHHHHHHhhh-cchhhhcCCCc------
Q 038309           24 VGALAIFTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVL----NLAIVVPQMLVSLLS-GPFDAVCGGGN------   92 (139)
Q Consensus        24 ~~al~lf~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIf----N~~IVIPQii~sl~~-G~~~~lfgg~~------   92 (139)
                      ..-+++..++|+. +..++.....++...|+  +++|..+|++    |+-..+=|++..... -++...+|.+.      
T Consensus       129 ~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~--~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g  205 (462)
T PRK15034        129 GIFIVIALLCGFA-GANFASSMGNISFFFPK--AKQGSALGINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADG  205 (462)
T ss_pred             HHHHHHHHHHHHH-HHhHHHHHHHHHHHCCH--hHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcccccccccc
Confidence            3445566677776 66777778888888887  6799999999    888877777665422 22333444432      


Q ss_pred             -----hhHHHHHHHHHHHHHHHhhhcccCCC
Q 038309           93 -----MPAFMVGAVAAALSGIVALTLLPSTT  118 (139)
Q Consensus        93 -----~~A~v~ggv~~liaail~~~i~p~~~  118 (139)
                           .++..+=.+..+++++++++..+.++
T Consensus       206 ~~~~~~~~~~~~~~~~iv~~i~~~~~~~~~~  236 (462)
T PRK15034        206 SVMSLANAAWIWVPLLAIATIAAWSGMNDIA  236 (462)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence                 12344555666677777776655443

>PRK10489 enterobactin exporter EntS; Provisional

Probab=91.60  E-value=0.71  Score=38.08  Aligned_cols=66  Identities=14%  Similarity=0.099  Sum_probs=45.2

Q ss_pred             hHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCCCchhHHHHHHHHHHHHHHHhhhcc
Q 038309           45 FAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAALSGIVALTLL  114 (139)
Q Consensus        45 yAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~~~~A~v~ggv~~liaail~~~i~  114 (139)
                      .+++....++  ++++-.+|+.+...-+-+++....+|.+.+.++  -...+.+.++..+++.++.+++.
T Consensus       132 ~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~--~~~~~~~~~~~~~~~~~~~~~l~  197 (417)
T PRK10489        132 LAATPALVGR--ENLMQAGAITMLTVRLGSVISPALGGLLIAAGG--VAWNYGLAAAGTFITLLPLLRLP  197 (417)
T ss_pred             hhhhhhccCH--HHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHHHhCC
Confidence            4566677776  567888999988888888777777776655433  23456677777777776665543

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=91.57  E-value=0.68  Score=41.86  Aligned_cols=86  Identities=21%  Similarity=0.172  Sum_probs=65.7

Q ss_pred             HHHHHHHHHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCCCchhHHHHHHHHH
Q 038309           24 VGALAIFTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAA  103 (139)
Q Consensus        24 ~~al~lf~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~~~~A~v~ggv~~  103 (139)
                      +.++..+.+.|+.|...++.=.+++-..+|+  +-+|=-++++++....-+-+-++..|.+-+.+|  ...++.++|+.+
T Consensus       308 ~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~--~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g--~~~al~~a~~~l  383 (524)
T PF05977_consen  308 WLALIALFLAGAAWIIANSSLNTLVQLSVPD--WVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFG--VRTALLIAGAAL  383 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH--HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--HHHHHHHHHHHH
Confidence            5566777889999999887777777788887  567777888887777777777777888766644  345788899998


Q ss_pred             HHHHHHhhhc
Q 038309          104 ALSGIVALTL  113 (139)
Q Consensus       104 liaail~~~i  113 (139)
                      ++++++.++.
T Consensus       384 ll~~~~~~~~  393 (524)
T PF05977_consen  384 LLSALIALRF  393 (524)
T ss_pred             HHHHHHHHHh
Confidence            8888887754

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PRK03633 putative MFS family transporter protein; Provisional

Probab=91.54  E-value=0.54  Score=38.42  Aligned_cols=78  Identities=15%  Similarity=0.066  Sum_probs=51.4

Q ss_pred             HhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCCCchhHHHHHHHHHHHHHHHhh
Q 038309           32 VLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAALSGIVAL  111 (139)
Q Consensus        32 ~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~~~~A~v~ggv~~liaail~~  111 (139)
                      ++|+.....+..-.+.+.+..++  ++.+-+++.+|+.--+-+++....+|.+.+.++  ....|.+.+.+.+++.++.+
T Consensus       294 l~g~~~~~~~p~~~~~~~~~~~~--~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g--~~~~f~~~~~~~l~~~~~~~  369 (381)
T PRK03633        294 ILGAAGFTLYPVAMAWACEKVEH--HELVAMNQALLLSYTVGSLLGPSFTAMLMQNYS--DNLLFIMIASVSFIYLLMLL  369 (381)
T ss_pred             HHHHHHHhHHHHHHHHHHccCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--ccHHHHHHHHHHHHHHHHHH
Confidence            34444444444444545555555  456778889888877888888888888766554  55677777777777776666


Q ss_pred             hc
Q 038309          112 TL  113 (139)
Q Consensus       112 ~i  113 (139)
                      +.
T Consensus       370 ~~  371 (381)
T PRK03633        370 RK  371 (381)
T ss_pred             hc
Confidence            54

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=91.53  E-value=0.43  Score=39.56  Aligned_cols=84  Identities=17%  Similarity=0.171  Sum_probs=53.4

Q ss_pred             chHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCCCchhHHHHHHHHHHHHHHHhhhc
Q 038309           34 GIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAALSGIVALTL  113 (139)
Q Consensus        34 GIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~~~~A~v~ggv~~liaail~~~i  113 (139)
                      |+..+..+....++.....++. +..|..+|++|....+-+.+.....|++.+..|+ ...++.+..++.++..++.+++
T Consensus       303 g~g~g~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~-~~~~~~~~~~~~~~~~~~~~~~  380 (393)
T PRK09705        303 GLGLGGAFPLCLLLALDHSVQP-AIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGN-YLMDWAFHALCVVGLMIITLRF  380 (393)
T ss_pred             HHhccchHHHHHHHHHhhcCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-chHHHHHHHHHHHHHHHHHHHh
Confidence            4443433333333434444321 3468889999988888888887777776666553 4566777777777777777777


Q ss_pred             ccCCCC
Q 038309          114 LPSTTA  119 (139)
Q Consensus       114 ~p~~~~  119 (139)
                      .|+.++
T Consensus       381 ~~~~~~  386 (393)
T PRK09705        381 APARFP  386 (393)
T ss_pred             cccccc
Confidence            776553

>PRK11043 putative transporter; Provisional

Probab=91.08  E-value=0.94  Score=36.96  Aligned_cols=84  Identities=14%  Similarity=0.003  Sum_probs=49.0

Q ss_pred             HHHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCCCchhHHHHHHHHHHHHHHH
Q 038309           30 FTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAALSGIV  109 (139)
Q Consensus        30 f~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~~~~A~v~ggv~~liaail  109 (139)
                      ..+.|+..+......-+++++..++  ++.+-.++.+|....+-..+..+.+|.+.+.++  -...+.+.++..++..++
T Consensus       101 ~~l~G~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g--~~~~~~~~~~~~~~~~~~  176 (401)
T PRK11043        101 RFVQAVGVCSAAVIWQALVIDRYPA--QKANRVFATIMPLVALSPALAPLLGAWLLNHFG--WQAIFATLFAITLLLILP  176 (401)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHhcCc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--hHHHHHHHHHHHHHHHHH
Confidence            3455665555554445667777666  445556677766555555555555555544432  334566667777777777


Q ss_pred             hhhcccCC
Q 038309          110 ALTLLPST  117 (139)
Q Consensus       110 ~~~i~p~~  117 (139)
                      .+++.|++
T Consensus       177 ~~~~~~~~  184 (401)
T PRK11043        177 TLRLKPSK  184 (401)
T ss_pred             HHHcCCCC
Confidence            66665543

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=91.03  E-value=1.5  Score=35.67  Aligned_cols=58  Identities=10%  Similarity=-0.102  Sum_probs=38.1

Q ss_pred             HHHHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhc
Q 038309           29 IFTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVC   88 (139)
Q Consensus        29 lf~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lf   88 (139)
                      ...+.|+..+.....-.+++.+..++  +++|..+|+.+.+.-+-.++....++.+.+.+
T Consensus       118 ~r~l~G~~~~~~~~~~~~~~~~~~~~--~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~  175 (399)
T PRK05122        118 GRLLLGIGESLAGTGSILWGIGRVGA--LHTGRVISWNGIATYGALAIGAPLGVLLYHWG  175 (399)
T ss_pred             HHHHHHhhHHhhcchHHHHHHhhcCh--hhhccchhhhhhhhhHHHHHHHHHHHHHHHcc
Confidence            34567777777666666666777776  56788888887776666555555555544433

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=90.83  E-value=0.91  Score=37.95  Aligned_cols=83  Identities=17%  Similarity=0.105  Sum_probs=54.4

Q ss_pred             HHHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCCCchhHHHHHHHHHHHHHHH
Q 038309           30 FTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAALSGIV  109 (139)
Q Consensus        30 f~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~~~~A~v~ggv~~liaail  109 (139)
                      .++.|+..+.....=.+++.+..++  ++.|-.+|+.+...-+-+.+....+|.+.+ +  +-...+.+.++..++++++
T Consensus       106 ~~l~g~~~~~~~~~~~~~~~~~~~~--~~~~~a~~~~~~~~~~g~~ig~~l~g~l~~-~--g~~~~f~~~~~~~~~~~i~  180 (400)
T PRK11646        106 CILSGLGGTLFDPPRTALVIKLIRP--HQRGRFFSLLMMQDSAGAVIGALLGSWLLQ-Y--DFRLVCATGAVLFVLAAAF  180 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h--hHHHHHHHHHHHHHHHHHH
Confidence            3444555433222224666777776  678999999988888888887776776552 2  3345677777777777777


Q ss_pred             hhhcccCC
Q 038309          110 ALTLLPST  117 (139)
Q Consensus       110 ~~~i~p~~  117 (139)
                      +.+..|++
T Consensus       181 ~~~~~~~~  188 (400)
T PRK11646        181 NAWLLPAY  188 (400)
T ss_pred             HHHhCCcc
Confidence            66666654

>TIGR00883 2A0106 metabolite-proton symporter

Probab=90.61  E-value=1.4  Score=34.38  Aligned_cols=62  Identities=11%  Similarity=0.019  Sum_probs=44.4

Q ss_pred             HHHHHHhchHHHHHhhchhHhhhhhccCCCCCceeeech-hhhhhhhHHHHHHhhhcchhhhcCC
Q 038309           27 LAIFTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGV-LNLAIVVPQMLVSLLSGPFDAVCGG   90 (139)
Q Consensus        27 l~lf~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGI-fN~~IVIPQii~sl~~G~~~~lfgg   90 (139)
                      +......|+..+.....-++++++..|+  +.+|.++|+ .|+...+-+.+....+|.+.+.+|.
T Consensus       316 ~~~~~~~g~~~~~~~~~~~~~~~~~~p~--~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~  378 (394)
T TIGR00883       316 FFLVLGLALIGGMYTGPMGSFLPELFPT--EVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTGD  378 (394)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHhCCc--cceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCc
Confidence            3444556666666677777888888887  567888998 5666677777777777877776554

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=90.33  E-value=0.84  Score=39.36  Aligned_cols=84  Identities=13%  Similarity=0.084  Sum_probs=56.4

Q ss_pred             HHhchHHHHHhhchhHhhhhhc-cCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCCCchhHHHHHHHHHHHHHHH
Q 038309           31 TVLGIPQAITFSVPFAMASIFS-RTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAALSGIV  109 (139)
Q Consensus        31 ~~lGIpwAs~lSmPyAm~s~~i-~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~~~~A~v~ggv~~liaail  109 (139)
                      ++.|+..+..+..-++++.... ++  +++|.++|++....-+-+.+..+.+|.+.+.++  -...|.+.....+++.++
T Consensus       102 ~l~G~g~~~~~~~~~~~l~~~~~~~--~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~g--wr~~f~i~~~~~~~~~~l  177 (495)
T PRK14995        102 ALLAIGAAMIVPATLAGIRATFTEE--KQRNMALGVWAAVGSGGAAFGPLVGGILLEHFY--WGSVFLINVPIVLVVMGL  177 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC--hHHHHHHHHHHHHHHHHH
Confidence            4567777776666666665554 44  578999999988888877777777777655443  345666666666666666


Q ss_pred             hhhcccCCC
Q 038309          110 ALTLLPSTT  118 (139)
Q Consensus       110 ~~~i~p~~~  118 (139)
                      .++..|+.+
T Consensus       178 ~~~~l~~~~  186 (495)
T PRK14995        178 TARYVPRQA  186 (495)
T ss_pred             HHHhCCCCC
Confidence            666666544

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=90.31  E-value=1.9  Score=37.03  Aligned_cols=81  Identities=17%  Similarity=0.110  Sum_probs=43.4

Q ss_pred             chHHHHHhhchhHhhhhhccCCCCCceeeech-hhhhhhhHHHHHHhhhcchhhhcCCCchhHHHHHHHHHHHHHHHhhh
Q 038309           34 GIPQAITFSVPFAMASIFSRTSAAGQGLSLGV-LNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAALSGIVALT  112 (139)
Q Consensus        34 GIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGI-fN~~IVIPQii~sl~~G~~~~lfgg~~~~A~v~ggv~~liaail~~~  112 (139)
                      |+..+...+.-.+++.+..|+  +..|..+|+ .|+..+.- .+.+...|.+.+..++...+.+ +..+..+++.+..++
T Consensus       353 g~~~~~~~g~~~~~~~~~~p~--~~Rg~~~g~~~~~~~~~g-~~~p~i~g~l~~~~~~~~~~~~-~~~~~~~i~~~~~~~  428 (490)
T PRK10642        353 AVILNCFTGVMASTLPAMFPT--HIRYSALAAAFNISVLVA-GLTPTLAAWLVESTQNLMMPAY-YLMVVAVIGLITGVT  428 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHCCC--ccchHHHHHHHHHHHHHH-HHHHHHHHHHHHHhCCchHHHH-HHHHHHHHHHHHHHH
Confidence            333333333334555666777  567777885 77777664 4445445544333333333433 445566666666666


Q ss_pred             cccCCC
Q 038309          113 LLPSTT  118 (139)
Q Consensus       113 i~p~~~  118 (139)
                      +.++|+
T Consensus       429 ~pes~~  434 (490)
T PRK10642        429 MKETAN  434 (490)
T ss_pred             hccccC
Confidence            544444

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=90.29  E-value=1  Score=39.64  Aligned_cols=83  Identities=7%  Similarity=0.086  Sum_probs=58.4

Q ss_pred             HHHHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCCCchhHHHHHHHHHHHHHH
Q 038309           29 IFTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAALSGI  108 (139)
Q Consensus        29 lf~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~~~~A~v~ggv~~liaai  108 (139)
                      ..++.|+..+...+...+++++..|+++++.+-.++++.+.+-+-..+....+|.+.+.+|  =.++|.+.++.++++-+
T Consensus       111 ~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~g--w~~~F~i~~i~~~~~~~  188 (489)
T PRK10207        111 ALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKFG--YSVTYNLCGAGLIIALL  188 (489)
T ss_pred             HHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhC--hHHHHHHHHHHHHHHHH
Confidence            3556788888888888899999998754455667888888888877776666777666554  45678777776555544


Q ss_pred             Hhhhc
Q 038309          109 VALTL  113 (139)
Q Consensus       109 l~~~i  113 (139)
                      ..++.
T Consensus       189 ~~~~~  193 (489)
T PRK10207        189 VYFAC  193 (489)
T ss_pred             HHHHc
Confidence            44443

>PRK03699 putative transporter; Provisional

Probab=90.27  E-value=1.3  Score=36.42  Aligned_cols=83  Identities=14%  Similarity=0.067  Sum_probs=46.2

Q ss_pred             HHHHHHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCCCchhHHHHHHHHHHHH
Q 038309           27 LAIFTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAALS  106 (139)
Q Consensus        27 l~lf~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~~~~A~v~ggv~~lia  106 (139)
                      ++...+.|+..+..++.-.+++++..++  +++|..+++.|.+..+=..+..+..+.+..- ..+-...+.+.++..++.
T Consensus        99 ~~~~~l~G~~~g~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~-~~gw~~~f~~~~~~~~~~  175 (394)
T PRK03699         99 SIAMFVLGVVSGITMSIGTFLITHVYEG--KQRGSRLLFTDSFFSMAGMIFPIIAAYLLAR-SIEWYWVYACIGLVYVAI  175 (394)
T ss_pred             HHHHHHHHHhhHhhccchhHHhhhhccc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHH
Confidence            3445567777777777667777887776  5678888877655433333333322322211 112334555556666655


Q ss_pred             HHHhhh
Q 038309          107 GIVALT  112 (139)
Q Consensus       107 ail~~~  112 (139)
                      .++.++
T Consensus       176 ~~~~~~  181 (394)
T PRK03699        176 FILTLF  181 (394)
T ss_pred             HHHHHh
Confidence            555544

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=89.89  E-value=1.1  Score=37.55  Aligned_cols=65  Identities=18%  Similarity=0.137  Sum_probs=39.3

Q ss_pred             hhhhccCCCCCceeeechhhhhhhhH-HHHHHhhhcchhhhcCCCchhHHHHHHHHHHHHHHHhhhcccC
Q 038309           48 ASIFSRTSAAGQGLSLGVLNLAIVVP-QMLVSLLSGPFDAVCGGGNMPAFMVGAVAAALSGIVALTLLPS  116 (139)
Q Consensus        48 ~s~~i~~~g~~~GlyMGIfN~~IVIP-Qii~sl~~G~~~~lfgg~~~~A~v~ggv~~liaail~~~i~p~  116 (139)
                      +.+..++  +..|.++|+.|.+-.+- +.+.....|.+.+.+|  -..++.+..+..+++.+..+++.+.
T Consensus       370 ~~~~~~~--~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~  435 (438)
T TIGR00712       370 ALELAPK--KAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG--WDGGFMVMIGGSILAVILLIVVMIG  435 (438)
T ss_pred             HHHhcCh--hheeeehhhhchHHHhhhhhhcchhHHHHHHhcc--chHHHHHHHHHHHHHHHHHHHHHhh
Confidence            4455565  56899999999876654 4455566666665554  3344555555555665555555443

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=89.44  E-value=1.2  Score=36.50  Aligned_cols=58  Identities=14%  Similarity=0.159  Sum_probs=39.0

Q ss_pred             CceeeechhhhhhhhHHHHHHhhhcchhhhcCCCchhHHHHHHHHHHHHHHHhhhcccCCC
Q 038309           58 GQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAALSGIVALTLLPSTT  118 (139)
Q Consensus        58 ~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~~~~A~v~ggv~~liaail~~~i~p~~~  118 (139)
                      +.+.++|..+....+-..+..+.+|.+.+.   +....|.+.++..++..+++++.+|+++
T Consensus       130 ~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~---~~~~~f~~~~~~~~~~~~~~~~~~~~~~  187 (396)
T TIGR00882       130 NSNFEYGKARMFGCVGWALCASIAGILFSI---DPQIVFWLGSGFALILMLLLMFAKPKAP  187 (396)
T ss_pred             hcccccchhhhhcccHHHHHHHHHhhhhcc---CchHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence            345677887777777777777776665432   3445777777777777777776666543

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=88.80  E-value=1.6  Score=37.43  Aligned_cols=86  Identities=10%  Similarity=0.071  Sum_probs=52.2

Q ss_pred             HHHHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcC------CCchhHHHHHHHH
Q 038309           29 IFTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCG------GGNMPAFMVGAVA  102 (139)
Q Consensus        29 lf~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfg------g~~~~A~v~ggv~  102 (139)
                      .=.+.|+..+..++.-.+++++..|+  ++.|.++|++.....+-.++.++....+..+++      -+=...|.++++.
T Consensus       124 ~R~l~G~g~g~~~~~~~~~~~e~~p~--~~Rg~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~  201 (490)
T PRK10642        124 CKMAQGFSVGGEYTGASIFVAEYSPD--RKRGFMGSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRIPFFIALPL  201 (490)
T ss_pred             HHHHHHhHhHhhHHHHHHHHHHhCCC--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHHHHHHHHHHH
Confidence            33466888888888888999999988  678999999876655554444432222222221      2334567777665


Q ss_pred             HHHHHHHhhhcccC
Q 038309          103 AALSGIVALTLLPS  116 (139)
Q Consensus       103 ~liaail~~~i~p~  116 (139)
                      .+++-++..++.++
T Consensus       202 ~l~~~~~~~~~~es  215 (490)
T PRK10642        202 GIIGLYLRHALEET  215 (490)
T ss_pred             HHHHHHHHHcCCCC
Confidence            55544333334333

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=88.66  E-value=3.1  Score=34.36  Aligned_cols=82  Identities=13%  Similarity=0.010  Sum_probs=46.4

Q ss_pred             HhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCCCchhHHHHHHHHHHHHHHHhh
Q 038309           32 VLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAALSGIVAL  111 (139)
Q Consensus        32 ~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~~~~A~v~ggv~~liaail~~  111 (139)
                      ++++-.+...-.-=+++++..++  +++|.++|+.....-+-+++.+..++.+.+.+. +-...|.+.++..+++.+..+
T Consensus       103 ~~~~~~~~~~~~~~al~~~~~~~--~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~-gw~~~f~i~a~~~l~~~l~~~  179 (402)
T PRK11902        103 LVAFLSASQDIVFDAYSTDVLHP--EERGAGAAVKVLGYRLAMLVSGGLALWLADRVL-GWGNTYLLMAGLMLAGALTTL  179 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCh--hhhhHHHHHHHHHHHHHHHHHhHHHHHHHhccc-CHHHHHHHHHHHHHHHHHHHH
Confidence            34443333333333777888777  568999998877666666665544444433221 344466666666666555544


Q ss_pred             hcccCC
Q 038309          112 TLLPST  117 (139)
Q Consensus       112 ~i~p~~  117 (139)
                      ++ |+|
T Consensus       180 ~~-~e~  184 (402)
T PRK11902        180 WA-PEP  184 (402)
T ss_pred             hc-CCC
Confidence            44 444

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=88.25  E-value=1.2  Score=37.67  Aligned_cols=85  Identities=18%  Similarity=0.080  Sum_probs=43.1

Q ss_pred             HHHHHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHH-HhhhcchhhhcCCCchhHHHHHHHHHHHH
Q 038309           28 AIFTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLV-SLLSGPFDAVCGGGNMPAFMVGAVAAALS  106 (139)
Q Consensus        28 ~lf~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~-sl~~G~~~~lfgg~~~~A~v~ggv~~lia  106 (139)
                      ++..+.|+.-+..+..--+++++..++  +++|..+|++|....+--.+. .+.+.... ... +-..++.+.++..++.
T Consensus       125 ~~~~l~gi~~g~~~~~~~~~~~~~~~~--~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~-~~~-gw~~~f~i~~~~~~~~  200 (452)
T PRK11273        125 VLLFLCGWFQGMGWPPCGRTMVHWWSQ--KERGGIVSVWNCAHNVGGGLPPLLFLLGMA-WFN-DWHAALYMPAFAAILV  200 (452)
T ss_pred             HHHHHHHHHHhccchHHHHHHHHhCCh--HHHHHHHHHHHHHHHhhhhHHHHHHHHHHH-Hhc-cHHHHHHHHHHHHHHH
Confidence            334445554443322223445565666  568999999887765442111 11111111 112 3345677766666666


Q ss_pred             HHHhhhcccC
Q 038309          107 GIVALTLLPS  116 (139)
Q Consensus       107 ail~~~i~p~  116 (139)
                      +++.++..++
T Consensus       201 ~~l~~~~~~~  210 (452)
T PRK11273        201 ALFAFAMMRD  210 (452)
T ss_pred             HHHHHHHccC
Confidence            6666555444

>PRK11010 ampG muropeptide transporter; Validated

Probab=88.13  E-value=2.9  Score=36.50  Aligned_cols=68  Identities=15%  Similarity=0.147  Sum_probs=50.1

Q ss_pred             hHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCCCchhHHHHHHHHHHHHHHHhhhcccC
Q 038309           45 FAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAALSGIVALTLLPS  116 (139)
Q Consensus        45 yAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~~~~A~v~ggv~~liaail~~~i~p~  116 (139)
                      +++....+++  +-.|..+|++|.+.-+..++.+...|.+.+.+|  -...|.+.+++.+++.++.++++++
T Consensus       338 ~a~~~~l~~~--~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G--~~~~f~~~~~~~l~~l~~~~~~~~~  405 (491)
T PRK11010        338 VALLMTLCNK--SFSATQFALLSALSAVGRVYVGPVAGWFVEAHG--WPTFYLFSVAAAVPGLLLLLVCRQT  405 (491)
T ss_pred             HHHHHHHcCC--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--hHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            4555556665  345777899999888888887777777666554  3457888899999988888877655

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=88.13  E-value=1.5  Score=35.90  Aligned_cols=89  Identities=15%  Similarity=0.256  Sum_probs=49.9

Q ss_pred             HHHHHHhchHHHHHhhchh-HhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCCC-c----hhHHHHHH
Q 038309           27 LAIFTVLGIPQAITFSVPF-AMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGG-N----MPAFMVGA  100 (139)
Q Consensus        27 l~lf~~lGIpwAs~lSmPy-Am~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~-~----~~A~v~gg  100 (139)
                      ++...++++.++. ..+|| ++.+...+++ ++++-..++.+++..+-.++.++..+++...++++ +    ...+.+.+
T Consensus       103 ~~~~~~~~~~~~~-~~~~~~al~~~~~~~~-~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~  180 (437)
T TIGR00792       103 YITYILLGLFYSF-VNIPYWSLVPAITLDP-RERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLA  180 (437)
T ss_pred             HHHHHHHHHHHHh-hcccHhhCcccccCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHH
Confidence            3344445555554 45787 4444444433 45667788888887777777777667766655531 1    12344555


Q ss_pred             HHHHHHHHHhh-hcccCC
Q 038309          101 VAAALSGIVAL-TLLPST  117 (139)
Q Consensus       101 v~~liaail~~-~i~p~~  117 (139)
                      +..++..++++ ++++++
T Consensus       181 ~l~~~~~~~~~~~~~e~~  198 (437)
T TIGR00792       181 LIGVVSLIICFFGTKERY  198 (437)
T ss_pred             HHHHHHHHHHHcCCEecC
Confidence            55555555544 444443

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>TIGR00896 CynX cyanate transporter

Probab=88.09  E-value=2.4  Score=33.99  Aligned_cols=73  Identities=21%  Similarity=0.197  Sum_probs=41.8

Q ss_pred             HHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCCCchhHHHHHHHHHHHH
Q 038309           31 TVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAALS  106 (139)
Q Consensus        31 ~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~~~~A~v~ggv~~lia  106 (139)
                      .+.|+..+.....-.+++.+..+   ++.|..+|++|....+-+.+..+.++++.+.++.+-...+...++..+++
T Consensus        95 ~~~g~g~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~~~~~  167 (355)
T TIGR00896        95 ALIGVGIAIINVLLPSLIKRDFP---QRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWWALPALLA  167 (355)
T ss_pred             HHHHHHHHHHhccchHHHHHhCc---chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence            34455444444333445555543   36899999999988888887776666655443332233444444444433

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=87.85  E-value=3.9  Score=34.29  Aligned_cols=72  Identities=11%  Similarity=0.056  Sum_probs=40.5

Q ss_pred             chhHhhhhhccCCCCCceeeechhhhh-hhhHHHHHHhhhcchhhhcCCCchhHHHHHHHHHHHHHHHhhhcccCCC
Q 038309           43 VPFAMASIFSRTSAAGQGLSLGVLNLA-IVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAALSGIVALTLLPSTT  118 (139)
Q Consensus        43 mPyAm~s~~i~~~g~~~GlyMGIfN~~-IVIPQii~sl~~G~~~~lfgg~~~~A~v~ggv~~liaail~~~i~p~~~  118 (139)
                      +..+++++..|+  +..|..+|+.|.. -++=.-......+.+++ . |.....+.+.++.++++.+..+++.+++|
T Consensus       356 ~~~~~~~e~fp~--~~r~t~~g~~~~~g~~~~g~~~p~~~~~l~~-~-g~~~~~~~~~~~~~~i~~~~~~~l~~~~~  428 (432)
T PRK10406        356 ISGILKAEMFPA--QVRALGVGLSYAVANALFGGSAEYVALSLKS-I-GMETAFFWYVTLMAVVAFLVSLMLHRKGK  428 (432)
T ss_pred             HHHHHHHHHCCC--CccchhhhHHHHHHHHHHHhHHHHHHHHHHH-h-CCCcHHHHHHHHHHHHHHHHHHHhhhccc
Confidence            445667788887  5678888886642 11100112223333333 2 33344567778888888888777655433

>PRK09848 glucuronide transporter; Provisional

Probab=87.50  E-value=2.6  Score=35.40  Aligned_cols=63  Identities=16%  Similarity=0.222  Sum_probs=47.8

Q ss_pred             HHHHHHhchHHHHHhhchhHhhhhhccCCC-----CCceeeechhhhhhhhHHHHHHhhhcchhhhcC
Q 038309           27 LAIFTVLGIPQAITFSVPFAMASIFSRTSA-----AGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCG   89 (139)
Q Consensus        27 l~lf~~lGIpwAs~lSmPyAm~s~~i~~~g-----~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfg   89 (139)
                      +..+.+.|+..+..+..+.++.+...+..+     ++.|.++|++|++.-+-+.+.....|.+.+..|
T Consensus       323 ~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~~G  390 (448)
T PRK09848        323 LVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGLSG  390 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            344566788888888889999988887531     245999999999999998888776776665544

>PRK09669 putative symporter YagG; Provisional

Probab=87.40  E-value=2  Score=36.20  Aligned_cols=65  Identities=12%  Similarity=0.199  Sum_probs=33.8

Q ss_pred             HHHHHHHHHhchHHHHHhhchhHhh-hhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCC
Q 038309           24 VGALAIFTVLGIPQAITFSVPFAMA-SIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGG   90 (139)
Q Consensus        24 ~~al~lf~~lGIpwAs~lSmPyAm~-s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg   90 (139)
                      +..++...++++.+. .+.+||.-+ ++..++.+ +++-..+....+..+-.++.++...++...+++
T Consensus       110 ~~~~~~~~l~~~~~t-~~~ip~~al~~~~t~~~~-eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~  175 (444)
T PRK09669        110 IYACVTYILLSLVYT-AINVPYCAMPGAITNDPR-ERHSLQSWRFALSFIGGLIVSVIALPLVDILGK  175 (444)
T ss_pred             HHHHHHHHHHHHHHH-hhcchHHHhHHHhcCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            445555566677777 577898544 44443332 333333433333344445555445555555654

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=87.32  E-value=2.1  Score=37.55  Aligned_cols=78  Identities=12%  Similarity=0.130  Sum_probs=52.0

Q ss_pred             HHHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCCCchhHHHHHHHHHHHHHHH
Q 038309           30 FTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAALSGIV  109 (139)
Q Consensus        30 f~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~~~~A~v~ggv~~liaail  109 (139)
                      ..+.|+..+.....+.++++...++++.+.+-.++++|+.+-+-..+..+.+|.+.+.+|  -..+|.++++.++++.+.
T Consensus       119 ~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g--~~~~F~i~~i~~~i~~i~  196 (500)
T PRK09584        119 MATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKYG--WSVAFALSVVGMLITVVN  196 (500)
T ss_pred             HHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhC--HHHHHHHHHHHHHHHHHH
Confidence            345566666666677788888877644444446788888888887777777777655443  455777777666665543

>PRK11462 putative transporter; Provisional

Probab=87.20  E-value=3.3  Score=35.81  Aligned_cols=67  Identities=18%  Similarity=0.287  Sum_probs=42.9

Q ss_pred             HHHHHHHHHhchHHHHHhhchh-HhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCCCc
Q 038309           24 VGALAIFTVLGIPQAITFSVPF-AMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGN   92 (139)
Q Consensus        24 ~~al~lf~~lGIpwAs~lSmPy-Am~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~~   92 (139)
                      +..++..+++.+.+... .+|| |+.++..+++ +.+.-.++...++-.+-.++.++...|+.+.+|+++
T Consensus       110 ~y~~~~~~~~~~~~t~~-~ipy~al~~~lt~d~-~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~  177 (460)
T PRK11462        110 IYAAITYTLLTLLYTVV-NIPYCALGGVITNDP-TQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDN  177 (460)
T ss_pred             HHHHHHHHHHHHHHHHH-hccHHHHHHHhcCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence            45666666677777654 4899 5555555554 456666777776666666666666666667677543

>TIGR00897 2A0118 polyol permease family

Probab=86.93  E-value=1.9  Score=35.67  Aligned_cols=57  Identities=9%  Similarity=-0.031  Sum_probs=31.9

Q ss_pred             HHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHH-HHHhhhcchhhhcC
Q 038309           31 TVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQM-LVSLLSGPFDAVCG   89 (139)
Q Consensus        31 ~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQi-i~sl~~G~~~~lfg   89 (139)
                      ...|+..+.....-.+.+.+..++  +++|..+|+.+...-+-+. +..+.++...+.+|
T Consensus       113 ~i~G~g~~~~~~~~~~~~~~~~~~--~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g  170 (402)
T TIGR00897       113 GIRGLGYPLFAYSFLVWVVYNTKQ--DNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFG  170 (402)
T ss_pred             HHHHcchHHHHhHHHHHHHHhCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence            334554444333333444555566  5789999999988777663 33444444433344

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK10504 putative transporter; Provisional

Probab=86.65  E-value=2.9  Score=35.00  Aligned_cols=60  Identities=10%  Similarity=0.100  Sum_probs=41.3

Q ss_pred             HHHHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCC
Q 038309           29 IFTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGG   90 (139)
Q Consensus        29 lf~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg   90 (139)
                      .+.+.|+..+..++.-.+++...+++  +..|..+|++|+..=+-+.+.....|.+.+.+|.
T Consensus       359 ~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~g~~~~~~~~~~~~g~~ig~~i~g~ll~~~g~  418 (471)
T PRK10504        359 VLFLQGMVNSTRFSSMNTLTLKDLPD--NLASSGNSLLSMIMQLSMSIGVTIAGLLLGLFGQ  418 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCH--HhccchHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            34455555555555555666666776  5688999999998888888777777776666554

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=86.59  E-value=1  Score=39.20  Aligned_cols=81  Identities=16%  Similarity=0.117  Sum_probs=49.1

Q ss_pred             HhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCCCchhHHHHHHHHHHHHHHHhh
Q 038309           32 VLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAALSGIVAL  111 (139)
Q Consensus        32 ~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~~~~A~v~ggv~~liaail~~  111 (139)
                      ++|+.=..+...-++++++..|+  +.+|.|||+++++.-+=..+.+.......  ...+...-+..-++.+++.+++.+
T Consensus       390 ~~~~ge~~~~p~~~~~~~~~aP~--~~~g~~~g~~~l~~~~g~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~  465 (475)
T TIGR00924       390 FQTLGELMISPLGLSWWTKIAPQ--RLMGQMLGMWFLAQAMGSLLGGYLATFGA--VPQGVTGVFGKIGLVTLLVGVVMA  465 (475)
T ss_pred             HHHHHHHHHhHHHHHHHHHhCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cccchhhHHHHHHHHHHHHHHHHH
Confidence            33333333444445677787787  68999999999777666555544333221  122334455666677777777777


Q ss_pred             hcccC
Q 038309          112 TLLPS  116 (139)
Q Consensus       112 ~i~p~  116 (139)
                      ++.|+
T Consensus       466 ~~~~~  470 (475)
T TIGR00924       466 LMVPW  470 (475)
T ss_pred             HHHHH
Confidence            66654

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=86.26  E-value=0.23  Score=45.79  Aligned_cols=83  Identities=18%  Similarity=0.138  Sum_probs=64.1

Q ss_pred             HHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCCC---chhHHHHHHHHHHHHH
Q 038309           31 TVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGG---NMPAFMVGAVAAALSG  107 (139)
Q Consensus        31 ~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~---~~~A~v~ggv~~liaa  107 (139)
                      ...||.-|+...+-=.+++...++  .+.+.-+|+||+.|-+--++    |.+.-....+-   =..+|.+.|+..++.+
T Consensus       129 ~~vGiGeAs~~~ia~s~IaD~f~~--~~Rs~~~~ify~~ipvGsgl----G~vvgs~va~~~~~Wr~af~~~avl~vi~~  202 (493)
T KOG1330|consen  129 GFVGIGEASYSPIAPSLIADSFPD--DKRSRVLGIFYFAIPVGSGL----GYVVGSVVASLTFWWRWAFRGSAVLGVIVG  202 (493)
T ss_pred             HHhccchhhhcccchhHhhhcCcc--hhhhHHHHHhhhhcccccce----eEEeeeeeccCccceEEEEEeehHHHHHHH
Confidence            467999999988888888988888  68999999999988665332    22222233333   3469999999999999


Q ss_pred             HHhhhcccCCCC
Q 038309          108 IVALTLLPSTTA  119 (139)
Q Consensus       108 il~~~i~p~~~~  119 (139)
                      ++.+++++.|..
T Consensus       203 ~L~~~f~~eP~r  214 (493)
T KOG1330|consen  203 LLVFLFVREPER  214 (493)
T ss_pred             HHHHhhccCccc
Confidence            999999998875

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=85.93  E-value=4.8  Score=35.02  Aligned_cols=82  Identities=12%  Similarity=0.179  Sum_probs=53.4

Q ss_pred             HHhchHHHHHhhchhHhhhhhccCCC-CCceeeechhhhhhhhHHHHHHhhhcchhhhcCCCchhHHHHHHHHHHHHHHH
Q 038309           31 TVLGIPQAITFSVPFAMASIFSRTSA-AGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAALSGIV  109 (139)
Q Consensus        31 ~~lGIpwAs~lSmPyAm~s~~i~~~g-~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~~~~A~v~ggv~~liaail  109 (139)
                      .++|+..+.......++++...++++ .+++..+++++..+-+=..+..+.+|.+.+.++  -..+|.++++.++++.+.
T Consensus       110 ~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g--~~~~f~~~~~~~~~~~l~  187 (475)
T TIGR00924       110 GTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENYG--YHVGFNLAAVGMVIGLLT  187 (475)
T ss_pred             HHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhcC--hHHHHHHHHHHHHHHHHH
Confidence            34556555555666677787777643 356778899998888888887776666544332  345777777777776555


Q ss_pred             hhhcc
Q 038309          110 ALTLL  114 (139)
Q Consensus       110 ~~~i~  114 (139)
                      .++..
T Consensus       188 ~~~~~  192 (475)
T TIGR00924       188 FFAGR  192 (475)
T ss_pred             HHHcc
Confidence            44433

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=85.90  E-value=2  Score=38.61  Aligned_cols=81  Identities=10%  Similarity=0.107  Sum_probs=58.8

Q ss_pred             HHHHHhhchh-HhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcch--hhhcC-----------CCchhHHHHHHH
Q 038309           36 PQAITFSVPF-AMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPF--DAVCG-----------GGNMPAFMVGAV  101 (139)
Q Consensus        36 pwAs~lSmPy-Am~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~--~~lfg-----------g~~~~A~v~ggv  101 (139)
                      ...... .|+ |+++...|+++++++...++++.+.-+=+++..+.++..  ...|+           .+-..+|.++++
T Consensus       127 ~~n~~~-~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~  205 (477)
T TIGR01301       127 ANNMLQ-GPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDII  205 (477)
T ss_pred             HHHHHH-HHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHH
Confidence            443333 355 788888888655678999999999999999988877753  22331           134568999999


Q ss_pred             HHHHHHHHhhh-cccCC
Q 038309          102 AAALSGIVALT-LLPST  117 (139)
Q Consensus       102 ~~liaail~~~-i~p~~  117 (139)
                      +++++.+++++ ++++|
T Consensus       206 ~l~i~~l~t~~~v~E~~  222 (477)
T TIGR01301       206 LLAILTYIALSAVKENP  222 (477)
T ss_pred             HHHHHHHHHeeeeeccC
Confidence            99999998886 44444

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>PRK12382 putative transporter; Provisional

Probab=85.59  E-value=6.5  Score=31.97  Aligned_cols=56  Identities=9%  Similarity=0.011  Sum_probs=37.1

Q ss_pred             HHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhc
Q 038309           31 TVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVC   88 (139)
Q Consensus        31 ~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lf   88 (139)
                      .+.|+..+.......+.+.+..++  ++.|..||+.....-+...+..+.++.+.+.+
T Consensus       120 ~l~G~~~~~~~~~~~~~~~~~~~~--~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~  175 (392)
T PRK12382        120 LILGFGESQLLTGALTWGLGLVGP--KHSGKVMSWNGMAMYGALAAGAPLGLLLHSHF  175 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhCCc--cccchhhhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            455666665555555666777776  67888999887777666666666666554433

>PRK11010 ampG muropeptide transporter; Validated

Probab=85.33  E-value=4.6  Score=35.25  Aligned_cols=83  Identities=13%  Similarity=-0.050  Sum_probs=51.3

Q ss_pred             HHHHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCCCchhHHHHHHHHHHHHHH
Q 038309           29 IFTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAALSGI  108 (139)
Q Consensus        29 lf~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~~~~A~v~ggv~~liaai  108 (139)
                      +..+.|+..+..-..--+++++..++  +++|.++|+.++..-+-.++.+...+.+.+-+ .+-...|.+.++..++..+
T Consensus       113 ~~~l~~~~~a~~~i~~~a~~~~~~~~--~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~-~GWr~~f~i~a~l~ll~~l  189 (491)
T PRK11010        113 LAVVIAFCSASQDIVFDAWKTDVLPA--EERGAGAAISVLGYRLAMLVSGGLALWLADRY-LGWQGMYWLMAALLIPCII  189 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCh--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cCHHHHHHHHHHHHHHHHH
Confidence            34455665554443444778888886  56898999988777777776665555544311 1334466666666777766


Q ss_pred             Hhhhcc
Q 038309          109 VALTLL  114 (139)
Q Consensus       109 l~~~i~  114 (139)
                      +.++++
T Consensus       190 ~~~~~~  195 (491)
T PRK11010        190 ATLLAP  195 (491)
T ss_pred             HHHhcC
Confidence            666543

>PRK09669 putative symporter YagG; Provisional

Probab=84.52  E-value=1.8  Score=36.41  Aligned_cols=64  Identities=17%  Similarity=0.105  Sum_probs=49.3

Q ss_pred             HHHHHHHhchHHHHHhhchhHhhhhhccCCCC-----CceeeechhhhhhhhHHHHHHhhhcchhhhcC
Q 038309           26 ALAIFTVLGIPQAITFSVPFAMASIFSRTSAA-----GQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCG   89 (139)
Q Consensus        26 al~lf~~lGIpwAs~lSmPyAm~s~~i~~~g~-----~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfg   89 (139)
                      .++..+..|+..+....++.+|++..++..+.     ..|++.|+.+++.=+-|.+.++.+|.+.+.+|
T Consensus       322 ~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~G  390 (444)
T PRK09669        322 IFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWVD  390 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            34455678999999999999999998863222     24778899999999999998887777666543

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=84.46  E-value=5  Score=33.72  Aligned_cols=66  Identities=14%  Similarity=0.176  Sum_probs=43.0

Q ss_pred             HhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCCCchhHHHHHHHHHHHHHHHhh
Q 038309           40 TFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAALSGIVAL  111 (139)
Q Consensus        40 ~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~~~~A~v~ggv~~liaail~~  111 (139)
                      .++.=+++.++..|+  +..|..+|+.|..-=+-.++.....+.+.    .+....|.+-++.++++++.++
T Consensus       297 ~~~~~~~~~~~~~p~--~~rgt~~G~~~~~g~~~~~~~~~~~~~~~----~~~~~~f~~~~~~~~i~~~~~~  362 (368)
T TIGR00903       297 AYAIIMDWIGKFCDK--ELHGKAAGAIGFTSRAISVALALAAMLFI----SSAEAYFTFLAILITIAFAIAL  362 (368)
T ss_pred             hHHHHHHHHHHhcch--hhcCcccchhhHHHHHHHHHHHHHHHHHh----cCHHHHHHHHHHHHHHHHHHHH
Confidence            333344677788887  56788899988866555555444444333    1445667777888888888765

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=84.01  E-value=5.3  Score=31.62  Aligned_cols=78  Identities=14%  Similarity=0.171  Sum_probs=41.9

Q ss_pred             HHHHHHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhh-hhHHHHHHhhhcchhhhcCCCchhHHHHHHHHHHH
Q 038309           27 LAIFTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAI-VVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAAL  105 (139)
Q Consensus        27 l~lf~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~I-VIPQii~sl~~G~~~~lfgg~~~~A~v~ggv~~li  105 (139)
                      +..+...|+.++..+....+...+..|   +++|..++++|..- .+..+.     +++..+...+....+.+.+.+..+
T Consensus       304 ~~~~~~~g~~~~~~~~~~~~~~~~~~~---~~~g~~~~~~~~~~~~~g~i~-----~~~~~~~~~~~~~~~~~~~~~~~~  375 (385)
T TIGR00710       304 IGPMMFVGIGNSMISSIAMAYALEDFP---HVAGTASALFGTLRLVLGAIV-----GYLVSLIHGNTAWPMSLSCLVLAV  375 (385)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccCc---ccchHHHHHHHHHHHHHHHHH-----HHHHHhccccChHHHHHHHHHHHH
Confidence            334556677777776666665555443   46788999988653 223222     222333334444555555555555


Q ss_pred             HHHHhhh
Q 038309          106 SGIVALT  112 (139)
Q Consensus       106 aail~~~  112 (139)
                      .++++++
T Consensus       376 ~~~~~~~  382 (385)
T TIGR00710       376 VSVLAFY  382 (385)
T ss_pred             HHHHHHH
Confidence            5554443

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=83.80  E-value=4.7  Score=32.98  Aligned_cols=72  Identities=18%  Similarity=0.259  Sum_probs=47.2

Q ss_pred             HHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCCCchhHHHHHHHHHHHHHHHhh
Q 038309           37 QAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAALSGIVAL  111 (139)
Q Consensus        37 wAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~~~~A~v~ggv~~liaail~~  111 (139)
                      .+.....-++.++...++ ++.+|..+++.|.+.-+-.++.+..+|.+.+.+|  -...+.+++++.+++.++.+
T Consensus       317 ~g~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G--~~~~f~~~~~~~l~a~~~~~  388 (390)
T TIGR02718       317 TGITSVAIYTAFMRFAGD-GDQAGTDVTAVQSTRDLGELIASSIAGYLTDRFG--YAGGFLSGTVLAVLAILLAV  388 (390)
T ss_pred             HHHHHHHHHHHHHHHhCc-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--cHHHHHHHHHHHHHHHHHhc
Confidence            344433334444455443 2467889999998888888888887887766654  34667777777777766543

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>PRK03699 putative transporter; Provisional

Probab=83.68  E-value=2.6  Score=34.74  Aligned_cols=79  Identities=13%  Similarity=0.131  Sum_probs=47.8

Q ss_pred             HHHHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCCCchhHHHHHHHHHHHHHH
Q 038309           29 IFTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAALSGI  108 (139)
Q Consensus        29 lf~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~~~~A~v~ggv~~liaai  108 (139)
                      +..+.|+.++..+++..+......++   +.+..+|..+.+--+=+++.+...|.+.+.+|-  ..++.+.+++.+++.+
T Consensus       300 ~~~~~G~~~~~~~~~~~~~~~~~~~~---~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g~--~~~~~~~~~~~~~~~~  374 (394)
T PRK03699        300 AILGLGFFSSAIYTTIITLGSQQTKV---ASPKLVNFILTCGTIGTMLTFVVTSPIVAHFGL--QAALLTANGLYAVVFV  374 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHccC---CCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCc--hhhhhhhHHHHHHHHH
Confidence            34455666665655555555554443   234456777777777788888878887776553  3455555555666655


Q ss_pred             Hhhh
Q 038309          109 VALT  112 (139)
Q Consensus       109 l~~~  112 (139)
                      +++.
T Consensus       375 ~~~~  378 (394)
T PRK03699        375 MCIL  378 (394)
T ss_pred             HHHH
Confidence            5443

>PRK03893 putative sialic acid transporter; Provisional

Probab=83.01  E-value=2.2  Score=35.79  Aligned_cols=74  Identities=12%  Similarity=0.086  Sum_probs=48.4

Q ss_pred             HHHHHHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCCCchhHHHHHHHHHH
Q 038309           27 LAIFTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAA  104 (139)
Q Consensus        27 l~lf~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~~~~A~v~ggv~~l  104 (139)
                      ++...+.|+..+..++...+++.+..++  +++|..+|+++...-+-+++.....+.+.+.++  -...+.++.+..+
T Consensus       112 ~~~~~l~G~~~~~~~~~~~~~~~~~~~~--~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~--w~~~f~~~~~~~~  185 (496)
T PRK03893        112 FIARLVIGMGMAGEYGSSATYVIESWPK--HLRNKASGFLISGFSIGAVVAAQVYSLVVPVWG--WRALFFIGILPII  185 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC--HHHHHHHHHHHHH
Confidence            3445567888888888888888998887  567888899888777766666555555443322  2234444444333

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=82.98  E-value=4.8  Score=33.06  Aligned_cols=77  Identities=12%  Similarity=0.006  Sum_probs=49.4

Q ss_pred             HHHHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhh-hhhhHHHHHHhhhcchhhhcCCCchhHHHHHHHHHHHHH
Q 038309           29 IFTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNL-AIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAALSG  107 (139)
Q Consensus        29 lf~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~-~IVIPQii~sl~~G~~~~lfgg~~~~A~v~ggv~~liaa  107 (139)
                      +..+-|+..+.........++.. |+  ++++.++|++|. ..-+-.++-++.+|.+.+.+|   ...+.+.++..+++.
T Consensus       299 ~q~l~g~~~~~~~~~~~~~i~~~-~~--~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g---~~~~~~~~~~~~~~~  372 (382)
T TIGR00902       299 LQILHCGTFAVCHLAAMRYIAAQ-PG--SEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLG---AGTFVFMAIIAAAAF  372 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhC-CH--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---HHHHHHHHHHHHHHH
Confidence            34455555555555555556655 55  567888999884 455777777888888766654   255666666666665


Q ss_pred             HHhh
Q 038309          108 IVAL  111 (139)
Q Consensus       108 il~~  111 (139)
                      ++++
T Consensus       373 ~~~~  376 (382)
T TIGR00902       373 FLIP  376 (382)
T ss_pred             HHHH
Confidence            5544

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=82.84  E-value=5.8  Score=34.38  Aligned_cols=84  Identities=15%  Similarity=0.160  Sum_probs=49.0

Q ss_pred             HHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhh-hhHHHHHHhhhcchhhhcCCCchh----HHHHHHHHHHH
Q 038309           31 TVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAI-VVPQMLVSLLSGPFDAVCGGGNMP----AFMVGAVAAAL  105 (139)
Q Consensus        31 ~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~I-VIPQii~sl~~G~~~~lfgg~~~~----A~v~ggv~~li  105 (139)
                      .+=|+-++.....-...+.+..|+  +-+.-.+|+++... =+--.+-++.+|.+.+.+|.+...    .+.++++..++
T Consensus       309 ~lhG~tf~~~~~a~~~yi~~~~p~--~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~  386 (400)
T PF03825_consen  309 LLHGLTFGLFHAASVRYIDRIAPP--ELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALV  386 (400)
T ss_pred             hhhhHHHHHHHHHHHHHHHHhCCc--cchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHH
Confidence            445777777776666777777776  33344444444432 366677788899888877877643    23333333333


Q ss_pred             HH-HHhhhcccC
Q 038309          106 SG-IVALTLLPS  116 (139)
Q Consensus       106 aa-il~~~i~p~  116 (139)
                      .. +++++.|||
T Consensus       387 ~~~~f~~~fk~~  398 (400)
T PF03825_consen  387 ILVLFVILFKPK  398 (400)
T ss_pred             HHHHHHhhccCC
Confidence            33 334445554

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=82.52  E-value=1.7  Score=38.15  Aligned_cols=87  Identities=14%  Similarity=0.148  Sum_probs=51.3

Q ss_pred             HHHHHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchh------hhc--CCCchhHHHHH
Q 038309           28 AIFTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFD------AVC--GGGNMPAFMVG   99 (139)
Q Consensus        28 ~lf~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~------~lf--gg~~~~A~v~g   99 (139)
                      ..++++|+.-..+..+=++++++..|+  +.+|.+||++.+...+-..+.+...+.+.      ...  .++-...|..-
T Consensus       387 ~~~~l~~~ge~~~~p~g~s~~~~~aP~--~~rg~~~g~~~l~~a~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~f~~~  464 (500)
T PRK09584        387 ASYGLQSIGELMISGLGLAMVAQLVPQ--RLMGFIMGSWFLTTAGAALIAGYVANLMAVPDNVTDPLMSLEVYGRVFLQI  464 (500)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHhCcH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHH
Confidence            334444444445555555777788888  68999999998888777766655443111      010  11224566666


Q ss_pred             HHHHHHHHHHhhhcccC
Q 038309          100 AVAAALSGIVALTLLPS  116 (139)
Q Consensus       100 gv~~liaail~~~i~p~  116 (139)
                      ++.+++.+++.+++.|+
T Consensus       465 ~~~~~~~a~~~~~~~~~  481 (500)
T PRK09584        465 GIATAVIAVLMLLTAPK  481 (500)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            66666566555554443

>PRK11043 putative transporter; Provisional

Probab=81.70  E-value=7.8  Score=31.63  Aligned_cols=38  Identities=16%  Similarity=0.136  Sum_probs=22.5

Q ss_pred             HHHHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhh
Q 038309           29 IFTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLA   69 (139)
Q Consensus        29 lf~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~   69 (139)
                      .+..+|+..+..+..-.+...+..+   +.+|-.+|+.|..
T Consensus       302 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~g~~~g~~~~~  339 (401)
T PRK11043        302 PFCVMAAANGAIYPIVVAQALRPFP---QATGKAAALQNTL  339 (401)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhCc---ccChHHHHHHHHH
Confidence            3445555555555544444333333   4689999999975

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=81.65  E-value=3.5  Score=34.61  Aligned_cols=58  Identities=19%  Similarity=0.165  Sum_probs=41.4

Q ss_pred             CCceeeechhhhhhhhHHHHHHhhhcchhhhcCCC-chhHHHHHHHHHHHHHHHhhhcc
Q 038309           57 AGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGG-NMPAFMVGAVAAALSGIVALTLL  114 (139)
Q Consensus        57 ~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~-~~~A~v~ggv~~liaail~~~i~  114 (139)
                      +..|..+|+.|+.-.+..++.....|.+.+-.+.+ -..+|.+.++..++++++..++.
T Consensus       392 ~~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~  450 (465)
T TIGR00894       392 RFLGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIFYLIFG  450 (465)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHHHeeeee
Confidence            46799999999998888888877666644322212 34577888888888888777543

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=81.59  E-value=5.5  Score=34.38  Aligned_cols=82  Identities=20%  Similarity=0.027  Sum_probs=42.8

Q ss_pred             HHHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcC-------CCchhHHHHHHHH
Q 038309           30 FTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCG-------GGNMPAFMVGAVA  102 (139)
Q Consensus        30 f~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfg-------g~~~~A~v~ggv~  102 (139)
                      ..+.|+..+.... ....+++..+.  +++|..+|+.|...-+--.+..+..+.+...+.       .+-...|.+.++.
T Consensus       131 r~l~G~~~~~~~~-~~~~i~~~~~~--~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l  207 (476)
T PLN00028        131 RFFIGFSLATFVS-CQYWMSTMFNG--KIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLL  207 (476)
T ss_pred             HHHHHHHHHhhHH-HHHHHHHhcCh--hheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHH
Confidence            3456666554332 33456777777  678999999875332222222221111111110       1234567777777


Q ss_pred             HHHHHHHhhhcc
Q 038309          103 AALSGIVALTLL  114 (139)
Q Consensus       103 ~liaail~~~i~  114 (139)
                      .++..++.+++.
T Consensus       208 ~l~~~l~~~~~~  219 (476)
T PLN00028        208 HIIMGILVLTLG  219 (476)
T ss_pred             HHHHHHHHHHHc
Confidence            666666666544

>PRK09952 shikimate transporter; Provisional

Probab=81.20  E-value=6.7  Score=33.21  Aligned_cols=73  Identities=11%  Similarity=0.070  Sum_probs=47.4

Q ss_pred             HHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCC------CchhHHHHHHHHHH
Q 038309           31 TVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGG------GNMPAFMVGAVAAA  104 (139)
Q Consensus        31 ~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg------~~~~A~v~ggv~~l  104 (139)
                      .+.|+..+..+..-.+++++..|+  +++|.+++..++...+=.++.......+...+++      +=...|.++++..+
T Consensus       133 ~l~G~~~g~~~~~~~~~~~e~~p~--~~rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l  210 (438)
T PRK09952        133 AIQGFAVGGEWGGAALLAVESAPK--NKKAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVL  210 (438)
T ss_pred             HHHHhhhcccHHHHHHHHHHhCCC--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHH
Confidence            456777777666556788898888  5789999999888777666655444443333321      22346677766654


Q ss_pred             H
Q 038309          105 L  105 (139)
Q Consensus       105 i  105 (139)
                      +
T Consensus       211 ~  211 (438)
T PRK09952        211 I  211 (438)
T ss_pred             H
Confidence            4

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=80.62  E-value=2.2  Score=33.14  Aligned_cols=60  Identities=17%  Similarity=0.119  Sum_probs=41.0

Q ss_pred             HHHHHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcC
Q 038309           28 AIFTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCG   89 (139)
Q Consensus        28 ~lf~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfg   89 (139)
                      +....+|+-........+.++++..|+  +++|..+|++|....+-+.+.....|.+.+.+|
T Consensus       315 ~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g  374 (379)
T TIGR00881       315 ICLFALGFLVYGPQMLIGVIASELAPK--KAAGTAAGFVGFFAYLGGILAGLPLGYLADGFG  374 (379)
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHHhcCc--chhHHHHHHHHHhhhhhhhhhhhhHHHHHHhhc
Confidence            334445544444444445667777777  678999999999998888887777777655443

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=80.43  E-value=9.8  Score=31.28  Aligned_cols=57  Identities=18%  Similarity=0.186  Sum_probs=36.1

Q ss_pred             hchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCCCch
Q 038309           33 LGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNM   93 (139)
Q Consensus        33 lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~~~   93 (139)
                      .|..++.....-.+++...  +  ++.|..+|..+...-+-.++..+.+|.+.+.+|-+..
T Consensus       104 ~~~~~~~~~p~~~al~~~~--~--~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g~~~~  160 (382)
T TIGR00902       104 FALFFSAGMPIGDALANTW--Q--KQFGLDYGKVRLIGSAAFIIGSALFGGLIGMFDEQNI  160 (382)
T ss_pred             HHHHHccchhHHHHHHHHH--H--HHcCCCccHHHHHHHHHHHHHHHHHHHHHHHcChhHH
Confidence            4444444433333443322  2  4567889999998888888888877777776664443

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>TIGR00895 2A0115 benzoate transport

Probab=80.26  E-value=1.5  Score=34.51  Aligned_cols=56  Identities=18%  Similarity=0.093  Sum_probs=43.6

Q ss_pred             HHHHHHHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcc
Q 038309           26 ALAIFTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGP   83 (139)
Q Consensus        26 al~lf~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~   83 (139)
                      .+..+.+.|+.++..+...++++++..|+  +.+|..+|+.+...-+.+.+..+.+|.
T Consensus       341 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~g~~~g~~~~~~~~g~~~g~~~~G~  396 (398)
T TIGR00895       341 LLLLGAIAGFFVNGGQSGLYALMALFYPT--AIRATGVGWAIGIGRLGAIIGPILAGY  396 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcCCH--HHHHHHHHHHHHHHHHHHHHHHHhHHh
Confidence            44556678888888888888998998887  568889999988877777776665554

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=80.19  E-value=4.9  Score=34.37  Aligned_cols=81  Identities=14%  Similarity=0.088  Sum_probs=51.3

Q ss_pred             HHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCCCchhHHHHHHHHHHHHHHHh
Q 038309           31 TVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAALSGIVA  110 (139)
Q Consensus        31 ~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~~~~A~v~ggv~~liaail~  110 (139)
                      +..|+..+......++++....+   ++.|..+|+.|...-+=..+....+|.+.+.+  +-..+|.+.++..+++.++.
T Consensus       116 ~l~G~~~~~~~~~~~~~~~~~~~---~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~--gwr~~f~~~~~~~~~~~v~~  190 (455)
T TIGR00892       116 FITGLGLAFNFQPSLTMLGKYFY---RRRPLANGLAMAGSPVFLSTLAPLNQYLFESF--GWRGSFLILGGLLLHCCVCG  190 (455)
T ss_pred             HHHHhcchhhhhHHHHHHHHHHH---hhHHHHHHHHHhcccHHHHHHHHHHHHHHHHh--ChHHHHHHHHHHHHHHHHHH
Confidence            34466666555555666666664   35789999999887766555555555554444  24456777777766666666


Q ss_pred             hhcccC
Q 038309          111 LTLLPS  116 (139)
Q Consensus       111 ~~i~p~  116 (139)
                      +++++.
T Consensus       191 ~~~~~~  196 (455)
T TIGR00892       191 ALMRPV  196 (455)
T ss_pred             HHhCCC
Confidence            665553

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=80.02  E-value=11  Score=30.80  Aligned_cols=59  Identities=15%  Similarity=0.016  Sum_probs=33.3

Q ss_pred             CceeeechhhhhhhhHHHHHHhhhcchhhhcCCCchhHHHHHHHHHHHHHHHhhhcccCCC
Q 038309           58 GQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAALSGIVALTLLPSTT  118 (139)
Q Consensus        58 ~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~~~~A~v~ggv~~liaail~~~i~p~~~  118 (139)
                      +++.+.++.....-+=.++.+...+.+.+.+|  -...|.+.++..++..+..++++|+++
T Consensus       130 ~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~g--w~~~f~~~a~l~~~~~~~~~~~~~~~~  188 (390)
T TIGR02718       130 TLAKGNAVQIAGVMIGFFGGGAGTLVLFGKFG--QRPAFLLVACVPLASLVCVLWLKDRAV  188 (390)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--HHHHHHHHHHHHHHHHHHHHHcCCCCc
Confidence            34555555555544454554444444444443  334667777777777777777766543

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	139
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	96.89
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	96.86
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	96.59
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	96.54
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	96.51
2xut_A	524	Proton/peptide symporter family protein; transport	96.45
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	96.33
2cfq_A	417	Lactose permease; transport, transport mechanism,	95.33
2xut_A	524	Proton/peptide symporter family protein; transport	94.81
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	89.84
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	89.78
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	88.23

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=96.89  E-value=0.00039  Score=54.35  Aligned_cols=88  Identities=16%  Similarity=0.069  Sum_probs=69.0

Q ss_pred             HHHHHHHHHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhh-HHHHHHhhhcchhhhcCCCchhHHHHHHHH
Q 038309           24 VGALAIFTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVV-PQMLVSLLSGPFDAVCGGGNMPAFMVGAVA  102 (139)
Q Consensus        24 ~~al~lf~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVI-PQii~sl~~G~~~~lfgg~~~~A~v~ggv~  102 (139)
                      ....+.+.++|+..+.....-++++.+..|+  +.+|..+|++|.+.-+ -+.+.....|.+.+.+|  -...+.+.+++
T Consensus       347 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g--~~~~~~~~~~~  422 (451)
T 1pw4_A          347 TVDMICMIVIGFLIYGPVMLIGLHALELAPK--KAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG--WDGGFMVMIGG  422 (451)
T ss_dssp             HHHHHHHHHHHHHHTHHHHHHHHHHHHTSCT--THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSC--SHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhchHHHHHHHHHHHhch--hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--cHHHHHHHHHH
Confidence            3445556677887777777778888998887  6799999999999999 99999888887766544  55678888888


Q ss_pred             HHHHHHHhhhccc
Q 038309          103 AALSGIVALTLLP  115 (139)
Q Consensus       103 ~liaail~~~i~p  115 (139)
                      .+++.++.+++..
T Consensus       423 ~~~~~~~~~~~~~  435 (451)
T 1pw4_A          423 SILAVILLIVVMI  435 (451)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh
Confidence            8888888776543

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=96.86  E-value=0.0043  Score=49.58  Aligned_cols=90  Identities=13%  Similarity=0.134  Sum_probs=65.0

Q ss_pred             HHHHHHHHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCCCchhHHHHHHHHHH
Q 038309           25 GALAIFTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAA  104 (139)
Q Consensus        25 ~al~lf~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~~~~A~v~ggv~~l  104 (139)
                      .....+.+.|+..+.....-++++.+..|+  +.+|..+|+.|.+..+-..+.+...|.+++.   +....+.+.++..+
T Consensus       388 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~--~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~---~~~~~~~~~~~~~~  462 (491)
T 4aps_A          388 WLVGSWALVILGEMLISPVGLSVTTKLAPK--AFNSQMMSMWFLSSSVGSALNAQLVTLYNAK---SEVAYFSYFGLGSV  462 (491)
T ss_dssp             HHHHHHHHHHHHHHTTTTHHHHHHHHHTTT--TCSSSSTHHHHHHHHHHHHHHHHHGGGGGGS---STTHHHHHTHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHhCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---cHHHHHHHHHHHHH
Confidence            344556677888888777888999999988  6789999999999999988888777776543   34456777777777


Q ss_pred             HHHHHhhhcccCCCC
Q 038309          105 LSGIVALTLLPSTTA  119 (139)
Q Consensus       105 iaail~~~i~p~~~~  119 (139)
                      +++++.++..++.++
T Consensus       463 ~~~~~~~~~~~~~~~  477 (491)
T 4aps_A          463 VLGIVLVFLSKRIQG  477 (491)
T ss_dssp             HHHHHHHHC------
T ss_pred             HHHHHHHHHHHHHHH
Confidence            888887777665543

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=96.59  E-value=0.0037  Score=48.17  Aligned_cols=89  Identities=16%  Similarity=0.206  Sum_probs=66.0

Q ss_pred             HHHHHHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCCCchhHHHHHHHHHHHH
Q 038309           27 LAIFTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAALS  106 (139)
Q Consensus        27 l~lf~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~~~~A~v~ggv~~lia  106 (139)
                      ++...+.|+..+.......+++++..++  ++++..+|+.+...-+-.++....++.+.+.++  -...+.+.++..+++
T Consensus        92 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~  167 (375)
T 2gfp_A           92 IAASAMQGMGTGVGGVMARTLPRDLYER--TQLRHANSLLNMGILVSPLLAPLIGGLLDTMWN--WRACYLFLLVLCAGV  167 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHT--SSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHH--HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhhHHHHHHHHCCH--HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcc--HHHHHHHHHHHHHHH
Confidence            3445567888888888888999999887  678999999999999888888877777654432  345677777777777


Q ss_pred             HHHhhhcccCCCC
Q 038309          107 GIVALTLLPSTTA  119 (139)
Q Consensus       107 ail~~~i~p~~~~  119 (139)
                      .++.++..|++++
T Consensus       168 ~~~~~~~~~~~~~  180 (375)
T 2gfp_A          168 TFSMARWMPETRP  180 (375)
T ss_dssp             HCCCCCSSCCCST
T ss_pred             HHHHHHHCcccCC
Confidence            7756655555443

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=96.54  E-value=0.0027  Score=49.61  Aligned_cols=88  Identities=18%  Similarity=0.067  Sum_probs=64.0

Q ss_pred             HHHHHHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCCCchhHHHHHHHHHHHH
Q 038309           27 LAIFTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAALS  106 (139)
Q Consensus        27 l~lf~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~~~~A~v~ggv~~lia  106 (139)
                      ++..++.|+..+..+..-.+++++..++  +++|.++|+.+....+-+++..+.++.+.+.+| +-...+.+.++..++.
T Consensus       123 ~~~~~l~G~~~~~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g-~w~~~f~~~~~~~~~~  199 (451)
T 1pw4_A          123 FVLLFLCGWFQGMGWPPCGRTMVHWWSQ--KERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFN-DWHAALYMPAFCAILV  199 (451)
T ss_dssp             HHHHHHHHHHHHHTHHHHHHHHHTTCTT--THHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTC-CSTTCTHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhccchHHHHHHHHCCc--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHH
Confidence            3445677888888887788899999887  679999999999998888888777777555554 2344566667777766


Q ss_pred             HHHhhhcccCC
Q 038309          107 GIVALTLLPST  117 (139)
Q Consensus       107 ail~~~i~p~~  117 (139)
                      +++.++..|++
T Consensus       200 ~~~~~~~~~~~  210 (451)
T 1pw4_A          200 ALFAFAMMRDT  210 (451)
T ss_dssp             HHHHHHHCCCS
T ss_pred             HHHHHhhccCC
Confidence            66665544443

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=96.51  E-value=0.011  Score=45.99  Aligned_cols=58  Identities=3%  Similarity=0.027  Sum_probs=49.4

Q ss_pred             HHHHHHHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchh
Q 038309           26 ALAIFTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFD   85 (139)
Q Consensus        26 al~lf~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~   85 (139)
                      -++...+.|+..+.....-.+++++..++  ++.|..+|+++.+.-+-+++..+.++.+.
T Consensus       120 l~~~~~l~G~~~~~~~~~~~~~~~~~~~~--~~r~~~~~~~~~~~~~g~~~g~~~~~~l~  177 (438)
T 3o7q_A          120 FLVGLFIIAAGLGCLETAANPFVTVLGPE--SSGHFRLNLAQTFNSFGAIIAVVFGQSLI  177 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHSSCS--TTHHHHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred             HHHHHHHHHhhHHHhhhhHHHHHHHHcCc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34556778888888888888999999988  67899999999999999999988888776

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=96.45  E-value=0.0033  Score=50.85  Aligned_cols=91  Identities=15%  Similarity=0.084  Sum_probs=60.5

Q ss_pred             HHHHHHHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCC---------CchhHH
Q 038309           26 ALAIFTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGG---------GNMPAF   96 (139)
Q Consensus        26 al~lf~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg---------~~~~A~   96 (139)
                      .++.++++|+..+.....-++++++..|+  +.+|..+|++|.+.-+-+.+.+...|.+.+..+.         .....+
T Consensus       408 ~~~~~~l~g~~~~~~~~~~~~~~~~~~p~--~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~  485 (524)
T 2xut_A          408 QILPYALLTFGEVLVSATGLEFAYSQAPK--AMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTGMSVTAFQM  485 (524)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTTHHHHCCT--TCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHHHHSCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCcH--HHHhHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccHH
Confidence            34456667777777777778888888887  6799999999999999988888777765542110         012236


Q ss_pred             HHHHHHHHHHHHHhhhcccCCC
Q 038309           97 MVGAVAAALSGIVALTLLPSTT  118 (139)
Q Consensus        97 v~ggv~~liaail~~~i~p~~~  118 (139)
                      .+.++..++++++.+++.++.+
T Consensus       486 ~~~~~~~~~~~~~~~~~~~~~~  507 (524)
T 2xut_A          486 FFFAGFAILAAIVFALYARSYQ  507 (524)
T ss_dssp             HHHHHHHHHHHHHHC-------
T ss_pred             HHHHHHHHHHHHHHHHHHHHhc
Confidence            6677777777777776666544

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=96.33  E-value=0.0094  Score=47.63  Aligned_cols=89  Identities=11%  Similarity=0.107  Sum_probs=66.2

Q ss_pred             HHHHHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCCCchhHHHHHHHHHHHHH
Q 038309           28 AIFTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAALSG  107 (139)
Q Consensus        28 ~lf~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~~~~A~v~ggv~~liaa  107 (139)
                      +...+.|+..+.....-.+++++..+++..+.|..+|++|....+-+++..+.+|.+.+.+|  -...+.+.++..+++.
T Consensus       113 ~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g--~~~~f~~~~~~~~~~~  190 (491)
T 4aps_A          113 GSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAG--YHVAFSLAAIGMFIGL  190 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC--HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhh--HHHHHHHHHHHHHHHH
Confidence            34556788888888888899999998854447889999999999988888877777665433  4557777788888877


Q ss_pred             HHhhhcccCCC
Q 038309          108 IVALTLLPSTT  118 (139)
Q Consensus       108 il~~~i~p~~~  118 (139)
                      ++.++..++..
T Consensus       191 ~~~~~~~~~~~  201 (491)
T 4aps_A          191 LVYYFGGKKTL  201 (491)
T ss_dssp             HHHHHHHHTTC
T ss_pred             HHHHHhCcccc
Confidence            77766655433

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=95.33  E-value=0.021  Score=45.61  Aligned_cols=72  Identities=14%  Similarity=0.081  Sum_probs=50.9

Q ss_pred             hHhhhhhccCCCCCceeeech-hhhhhhhHHHHHHhhhcchhhhcCCCchhHHHHHHHHHHHHHHHhhhcccCCCCC
Q 038309           45 FAMASIFSRTSAAGQGLSLGV-LNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAALSGIVALTLLPSTTAD  120 (139)
Q Consensus        45 yAm~s~~i~~~g~~~GlyMGI-fN~~IVIPQii~sl~~G~~~~lfgg~~~~A~v~ggv~~liaail~~~i~p~~~~~  120 (139)
                      ++.+++..|+  +.+|..+|+ +|..--+..++..+.+|.+.+.+|  -..++.+.++..++++++.++..++.+++
T Consensus       334 ~~~~~~~~p~--~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g--~~~~f~~~~~~~l~~~~~~~~~~~~~~~~  406 (417)
T 2cfq_A          334 FKYITSQFEV--RFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIG--FQGAYLVLGLVALGFTLISVFTLSGPGPL  406 (417)
T ss_dssp             HHHHHHHSCH--HHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSH--HHHHHHHHHHHHHHHHHHHTTSSCCSCTT
T ss_pred             HHHHHHHCCH--HHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcC--cHHHHHHHHHHHHHHHHHHHhhhcCCCch
Confidence            5667777776  457777777 587777777777777776555433  45578888888889988887766655544

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=94.81  E-value=0.11  Score=42.02  Aligned_cols=86  Identities=9%  Similarity=-0.013  Sum_probs=58.8

Q ss_pred             HHHHHHhchHHHHHhhchhHhhhhhccCCCCCceeeech---hhhhhhhHHHHHHhhhcchhhhcCCCchhHHHHHHHHH
Q 038309           27 LAIFTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGV---LNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAA  103 (139)
Q Consensus        27 l~lf~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGI---fN~~IVIPQii~sl~~G~~~~lfgg~~~~A~v~ggv~~  103 (139)
                      ++...+.|+..+.....-.+++++..++  ++.|..+++   .+....+-+++..+.+|.+.+.+  +-...+.+.++..
T Consensus       113 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~--~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~--g~~~~f~~~~~~~  188 (524)
T 2xut_A          113 YTGLFLIALGSGGIKPLVSSFMGDQFDQ--SNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNF--GAAVAFGIPGVLM  188 (524)
T ss_dssp             HHHHHHHHHHHHTTHHHHHHHHHHTCST--TTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTS--CHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccccchhHHHHHHHHcCc--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--cHHHHHHHHHHHH
Confidence            3445667888888777778889999887  455555555   77777777777777666655433  2445677777777


Q ss_pred             HHHHHHhhhcccC
Q 038309          104 ALSGIVALTLLPS  116 (139)
Q Consensus       104 liaail~~~i~p~  116 (139)
                      +++.++.++..++
T Consensus       189 ~~~~~~~~~~~~~  201 (524)
T 2xut_A          189 FVATVFFWLGRKR  201 (524)
T ss_dssp             HHHHHHHHSSSSS
T ss_pred             HHHHHHHHHhccc
Confidence            7777766655443

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=89.84  E-value=0.75  Score=36.43  Aligned_cols=75  Identities=19%  Similarity=0.158  Sum_probs=43.6

Q ss_pred             hchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhh----hcCCCchhHHHHHHHHHHHHHHHhhhcccCC
Q 038309           42 SVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDA----VCGGGNMPAFMVGAVAAALSGIVALTLLPST  117 (139)
Q Consensus        42 SmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~----lfgg~~~~A~v~ggv~~liaail~~~i~p~~  117 (139)
                      .++|.+.++..|.  +-++..+|+-+.+--+-.++.+...+.+.+    .-+-+....+.+-++..+++++++++..|+.
T Consensus       389 ~~~~~~~~E~fPt--~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PET  466 (491)
T 4gc0_A          389 PVCWVLLSEIFPN--AIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPET  466 (491)
T ss_dssp             HHHHHHHHHSSCT--TTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred             HHHHHHHHHhCCH--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCC
Confidence            5788999999887  456667777665433333333332222211    0011223445566677778888888888876


Q ss_pred             C
Q 038309          118 T  118 (139)
Q Consensus       118 ~  118 (139)
                      |
T Consensus       467 k  467 (491)
T 4gc0_A          467 K  467 (491)
T ss_dssp             T
T ss_pred             C
Confidence            6

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=89.78  E-value=0.45  Score=36.88  Aligned_cols=81  Identities=15%  Similarity=0.115  Sum_probs=54.2

Q ss_pred             HHHHHHHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCCCchhHHHHHHHHHHH
Q 038309           26 ALAIFTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAAL  105 (139)
Q Consensus        26 al~lf~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~~~~A~v~ggv~~li  105 (139)
                      .+..+..+|+..+..+...++++.+..+++   .+..+++.+ +-.+-+.+.....|.+.+.+|+ -..++.+.++++++
T Consensus       350 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~-~~~~~~~~~~~~~~  424 (438)
T 3o7q_A          350 GLIALTLCSAFMSIQYPTIFSLGIKNLGQD---TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGN-IPTAELIPALCFAV  424 (438)
T ss_dssp             HHHHHHHHHHHHTTHHHHHHHHHHSSCGGG---HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTS-SGGGGHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcccc---ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcc-hHHHHHHHHHHHHH
Confidence            345567778888888888888878877763   666677666 4447778888777877776552 33455556666655


Q ss_pred             HHHHhh
Q 038309          106 SGIVAL  111 (139)
Q Consensus       106 aail~~  111 (139)
                      ..++.+
T Consensus       425 ~~~~~~  430 (438)
T 3o7q_A          425 IFIFAR  430 (438)
T ss_dssp             HHHHHT
T ss_pred             HHHHHH
Confidence            555444

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=88.23  E-value=0.41  Score=37.99  Aligned_cols=86  Identities=15%  Similarity=0.059  Sum_probs=57.0

Q ss_pred             HHHHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCCC------chhHHHHHHHH
Q 038309           29 IFTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGG------NMPAFMVGAVA  102 (139)
Q Consensus        29 lf~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~------~~~A~v~ggv~  102 (139)
                      .=.+.|+..+..+..-.+++++..|+  ++.|.++++.+.++++.+++..+.+.......+..      -...+.+..+.
T Consensus       132 ~R~l~G~g~G~~~~~~~~~i~E~~p~--~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (491)
T 4gc0_A          132 YRIIGGIGVGLASMLSPMYIAELAPA--HIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIP  209 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTSCG--GGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhCCH--HhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhh
Confidence            34566788888888888899999998  68999999999999999998877555443332221      12234444444


Q ss_pred             HHHHHHHhhhcccC
Q 038309          103 AALSGIVALTLLPS  116 (139)
Q Consensus       103 ~liaail~~~i~p~  116 (139)
                      .++..++.+++.+.
T Consensus       210 ~~~~~~~~~~~peS  223 (491)
T 4gc0_A          210 ALLFLMLLYTVPES  223 (491)
T ss_dssp             HHHHHHHGGGSCCC
T ss_pred             hhhhhhhhhcCCCC
Confidence            44444444444333

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	139
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	97.39
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	96.93
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	96.52

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=97.39  E-value=0.00022  Score=50.99  Aligned_cols=93  Identities=12%  Similarity=0.042  Sum_probs=71.4

Q ss_pred             HHHHHHHHHhchHHHHHhhchhHhhhhhccCCCCCceeeech-hhhhhhhHHHHHHhhhcchhhhcCCCchhHHHHHHHH
Q 038309           24 VGALAIFTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGV-LNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVA  102 (139)
Q Consensus        24 ~~al~lf~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGI-fN~~IVIPQii~sl~~G~~~~lfgg~~~~A~v~ggv~  102 (139)
                      ...++.+.+.|+..+......++++++..|+  +.+|..+|+ .|+..-+-+++.++..|.+.+.+|  ...++.+.++.
T Consensus       313 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g--~~~~~~~~~~~  388 (417)
T d1pv7a_         313 LEVVILKTLHMFEVPFLLVGCFKYITSQFEV--RFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIG--FQGAYLVLGLV  388 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCG--GGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHC--HHHHHHHHHHH
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHCCH--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--HHHHHHHHHHH
Confidence            4455667778888888888889999999998  568888887 467777888888888888766655  34567777777


Q ss_pred             HHHHHHHhhhcccCCCCC
Q 038309          103 AALSGIVALTLLPSTTAD  120 (139)
Q Consensus       103 ~liaail~~~i~p~~~~~  120 (139)
                      .++++++.++.+++++|.
T Consensus       389 ~~~~~~~~~~~l~~~~~~  406 (417)
T d1pv7a_         389 ALGFTLISVFTLSGPGPL  406 (417)
T ss_dssp             HHHHHHHHHHHSCCSSCT
T ss_pred             HHHHHHHHHHhhcCCCcc
Confidence            888888888777776654

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=96.93  E-value=0.00075  Score=50.16  Aligned_cols=88  Identities=18%  Similarity=0.064  Sum_probs=58.1

Q ss_pred             HHHHHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCCCchhHHHHHHHHHHHHH
Q 038309           28 AIFTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAALSG  107 (139)
Q Consensus        28 ~lf~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~~~~A~v~ggv~~liaa  107 (139)
                      +...+.|+..+..+..-.+++++..++  +++|..+|+++.+..+-.++..+.++.....+++-+. .+.+.++..++.+
T Consensus       121 ~~~~~~g~~~~~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~w~~-~~~~~~~~~~~~~  197 (447)
T d1pw4a_         121 VLLFLCGWFQGMGWPPCGRTMVHWWSQ--KERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHA-ALYMPAFCAILVA  197 (447)
T ss_dssp             HHHHHHHHHHHHTHHHHHHHHHTTCTT--THHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTT-CTHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhhhhhHHHHHHHHHHHh--hcccccccccccccchhhhhhhhhhhhHhhhhhcccc-cchhhhhhHHHHH
Confidence            334556666677777777888888887  5789999999999888877777666665555554444 4445555555555


Q ss_pred             HHhhhcccCCC
Q 038309          108 IVALTLLPSTT  118 (139)
Q Consensus       108 il~~~i~p~~~  118 (139)
                      ++.++..++++
T Consensus       198 ~~~~~~~~~~~  208 (447)
T d1pw4a_         198 LFAFAMMRDTP  208 (447)
T ss_dssp             HHHHHHCCCSS
T ss_pred             HHHHHhcccch
Confidence            55554444433

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=96.52  E-value=0.0005  Score=51.16  Aligned_cols=89  Identities=16%  Similarity=0.064  Sum_probs=59.9

Q ss_pred             HHHHHHHHHHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhh-HHHHHHhhhcchhhhcCCCchhHHHHHHH
Q 038309           23 KVGALAIFTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVV-PQMLVSLLSGPFDAVCGGGNMPAFMVGAV  101 (139)
Q Consensus        23 ~~~al~lf~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVI-PQii~sl~~G~~~~lfgg~~~~A~v~ggv  101 (139)
                      ....++.+..+|+..+......++++++..|+  +.+|..+|+.|.+--+ -.++..+..|.+.+.+|-  ...+.+.++
T Consensus       343 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~--~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g~--~~~~~~~~~  418 (447)
T d1pw4a_         343 PTVDMICMIVIGFLIYGPVMLIGLHALELAPK--KAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGW--DGGFMVMIG  418 (447)
T ss_dssp             HHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCT--THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCS--HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh--HHHHHHHHH
Confidence            34455566677888878788888888888887  6789999999987544 566666666776665553  334555555


Q ss_pred             HHHHHHHHhhhccc
Q 038309          102 AAALSGIVALTLLP  115 (139)
Q Consensus       102 ~~liaail~~~i~p  115 (139)
                      +.+++.++.+++..
T Consensus       419 ~~~~~~~~~~~~~~  432 (447)
T d1pw4a_         419 GSILAVILLIVVMI  432 (447)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            66666665554433