Citrus Sinensis ID: 038338

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-
Protein Sequence
MEKNVYLSIKLSYDFLRSEEAKSMFRLCGLYSEGHAIPVPYLLRYGVGWGLFENVYTLEEARSRVHRLIDNLKSSCLLLDGDAEDEVKMHDIIHVVAVSVAAETRMFNIPNVADLEKKMEETIRKDPIAISLPQRNIQELPERLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPSSLGRLINLQTLCLDWCQLEDVAAIGQLKKLEILNLADSNIEQLPLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNSFSGWEKVEGGSNASLVELKRLTKLTTLEIEVRDAEILLPDFVSVELQRYRIRIGDKLEYEIDQLLVKSEALRLMMLKGLEKVSILQENDGTKMLLQRTEDLWLVKLEGVQNVVHELDDGEGFPRLKHLHVESCYEIVHIVGSVRR
Secondary Structure (PSIPRED)
ccccHHHHHHHHHccccccHHHHHHHHHHcccccccccHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHcccccccccccEEEEcHHHHHHHHHHHccccEEEEccccccccccccEEEEcEEEEEccccccccccccccccccEEEEEEccccccccccHHHHcccccccEEEccccccccccccccccccccEEEcccccccccccccccccccEEEccccccccccHHHcccccccEEEccccccccccccccccccccccEEEccccccccEEEcccccccHHHHcccccccEEEEEEccccccccccccccccEEEEEEccccccHHHHHcccccccEEEEccccccccccccccccccccccccEEEEEEcccccccccccccccccccccEEEEEcccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHccHcccccHHHHHHEEEEEcccccccccHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHccccccccEEEEHHHHHHHHHHHHcccccEEEEccccccccccccccccEEEEEEEccccccccccccccccEEEEEEccccccccccHHHHHHccccEEEEccccccccccccHHHHHccEEEEccccccccccccccccccEEEEccccccHHccHHHHHHHccEEEEcccccccccccccHHHcHHHHHEEEEEEccccccccccccHHHHHHHHccccccEEEEEccccHHHHHHcccccccEEEEEEccccccccccccccccccccccccHHHcccccccccccccccccccEEEEEccccccccccccccccccccccEEEEcccHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MEKNVYLSIKLSYDFLRSEEAKSMFRLcglyseghaipvpylLRYGVGWGLFENVYTLEEARSRVHRLIDNLKSscllldgdaedevkmhDIIHVVAVSVAAEtrmfnipnvaDLEKKMEETIrkdpiaislpqrniqelperlqcpnlqLFLLFRqgygpvqisdlffegtEELKVLSLIGIHFSSLPSSLGRLINLQTLCLDWCQLEDVAAIGQLKKLEILNLAdsnieqlpleigqltglrlldltncwslqviapnVISKLSRLEELYmdnsfsgwekveggsnasLVELKRLTKLTTLEIEVrdaeillpdfvsVELQRYRIRIGDKLEYEIDQLLVKSEALRLMMLKGLEKVSILQENDGTKMLLQRTEDLWLVKLEGVQNVvhelddgegfprlkhlhvESCYEIVHIVGSVRR
Flexible Loop (DISEMBL)
MEKNVYLSIKLSYDFLRSEEAKSMFRLCGLYSEGHAIPVPYLLRYGVGWGLFENVYTLEEARSRVHRLIDNLKSSCLLLDGDAEDEVKMHDIIHVVAVSVAAETRMFNIPNVADLEKKMEETIrkdpiaislPQRNIQELPERLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPSSLGRLINLQTLCLDWCQLEDVAAIGQLKKLEILNLADSNIEQLPLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNSFSGWekveggsnaslvelKRLTKLttleievrdaeillpdfvsveLQRYRIRIGDKLEYEIDQLLVKSEALRLMMLKGLEKVSILQENDGTKMLLQRTEDLWLVKLEGVQNVVHELDDGEGFPRLKHLHVESCYEIVHIVGSVRR
Low Complexity Region (SEG)
MEKNVYLSIKLSYDFLRSEEAKSMFRLCGLYSEGHAIPVPYLLRYGVGWGLFENVYTLEEARSRVHRLIDNLKSSCLLLDGDAEDEVKMHDIIHVVAVSVAAETRMFNIPNVADLEKKMEETIRKDPIAISLPQRNIQELPERLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPSSLGRLINLQTLCLDWCQLEDVAAIGQLKKLEILNLADSNIEQLPLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNSFSGWEKVEGGSNASlvelkrltklttleieVRDAEILLPDFVSVELQRYRIRIGDKLEYEIDQLLVKSEALRLMMLKGLEKVSILQENDGTKMLLQRTEDLWLVKLEGVQNVVHELDDGEGFPRLKHLHVESCYEIVHIVGSVRR
Disordered region (IsUnstruct)
****VYLSIKLSYDFLRSEEAKSMFRLCGLYSEGHAIPVPYLLRYGVGWGLFENVYTLEEARSRVHRLIDNLKSSCLLLDGDAEDEVKMHDIIHVVAVSVAAETRMFNIPNVADLEK****TIRKDPIAISLPQRNIQELPERLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPSSLGRLINLQTLCLDWCQLEDVAAIGQLKKLEILNLADSNIEQLPLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNSFSGWEKVEGGSNASLVELKRLTKLTTLEIEVRDAEILLPDFVSVELQRYRIRIGDKLEYEIDQLLVKSEALRLMMLKGLEKVSILQENDGTKMLLQRTEDLWLVKLEGVQNVVHELDDGEGFPRLKHLHVESCYEIVHIVG****
Disordered Region (DISOPRED)
MEKNVYLSIKLSYDFLRSEEAKSMFRLCGLYSEGHAIPVPYLLRYGVGWGLFENVYTLEEARSRVHRLIDNLKSSCLLLDGDAEDEVKMHDIIHVVAVSVAAETRMFNIPNVADLEKKMEETIRKDPIAISLPQRNIQELPERLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPSSLGRLINLQTLCLDWCQLEDVAAIGQLKKLEILNLADSNIEQLPLEIGQLTGLRLLDLTNCWSLQVIAP*VISKLSRLEELYMDNSFSGWEKVEGGSNASLVELKRLTKLTTLEIEVRDAEILLPDFVSVELQRYRIRIGDKLEYEIDQLL*KSEALRLMMLKGLEKVSILQENDGTKMLLQRTEDLWLVKLEGVQNVVHELDDGEGFPRLKHLHVESCYEIVHIVGS***
Disordered Region (DISEMBL)
MEKNVYLSIKLSYDFLRSEEAKSMFRLCGLYSEGHAIPVPYLLRYGVGWGLFENVYTLEEARSRVHRLIDNLKSSCLLLDGDAEDEVKMHDIIHVVAVSVAAETRMFNIPNVADLEKKMEETIRKDPIAISLPQRNIQELPERLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPSSLGRLINLQTLCLDWCQLEDVAAIGQLKKLEILNLADSNIEQLPLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNSFSGWEKVEGGSNASLVELKRLTKLTTLEIEVRDAEILLPDFVSVELQRYRIRIGDKLEYEIDQLLVKSEALRLMMLKGLEKVSILQENDGTKMLLQRTEDLWLVKLEGVQNVVHELDDGEGFPRLKHLHVESCYEIVHIVGSVRR
Disordered Region (DISPRO)
**KNVYLSIKLSYDFLRSEEAKSMFRLCGLYSEGHAIPVPYLLRYGVGWGLFENVYTLEEARSRVHRLIDNLKSSCLLLDGDAEDEVKMHDIIHVVAVSVAAETRMFNIPNVADLEKKMEETIRKDPIAISLPQRNIQELPERLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPSSLGRLINLQTLCLDWCQLEDVAAIGQLKKLEILNLADSNIEQLPLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNSFSGWEKVEGGSNASLVELKRLTKLTTLEIEVRDAEILLPDFVSVELQRYRIRIGDKLEYEIDQLLVKSEALRLMMLKGLEKVSILQENDGTKMLLQRTEDLWLVKLEGVQNVVHELDDGEGFPRLKHLHVESCYEIVHIVGSVR*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEKNVYLSIKLSYDFLRSEEAKSMFRLCGLYSEGHAIPVPYLLRYGVGWGLFENVYTLEEARSRVHRLIDNLKSSCLLLDGDAEDEVKMHDIIHVVAVSVAAETRMFNIPNVADLEKKMEETIRKDPIAISLPQRNIQELPERLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPSSLGRLINLQTLCLDWCQLEDVAAIGQLKKLEILNLADSNIEQLPLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNSFSGWEKVEGGSNASLVELKRLTKLTTLEIEVRDAEILLPDFVSVELQRYRIRIGDKLEYEIDQLLVKSEALRLMMLKGLEKVSILQENDGTKMLLQRTEDLWLVKLEGVQNVVHELDDGEGFPRLKHLHVESCYEIVHIVGSVRR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	421	2.2.26 [Sep-21-2011]
Q9T048	985	Disease resistance protei	yes	no	0.933	0.398	0.286	1e-30
O81825	919	Probable disease resistan	no	no	0.712	0.326	0.311	2e-28
Q42484	909	Disease resistance protei	no	no	0.674	0.312	0.311	2e-27
Q9LVT4	843	Probable disease resistan	no	no	0.577	0.288	0.28	4e-15
O82484	892	Putative disease resistan	no	no	0.574	0.271	0.281	2e-13
Q8RXS5	888	Probable disease resistan	no	no	0.577	0.273	0.303	2e-13
P60838	894	Probable disease resistan	no	no	0.489	0.230	0.282	6e-11
Q8L3R3	885	Disease resistance protei	no	no	0.565	0.268	0.283	1e-10
Q9SH22	884	Probable disease resistan	no	no	0.605	0.288	0.270	2e-10
O64973	889	Disease resistance protei	no	no	0.567	0.268	0.285	4e-10

>sp|Q9T048|DRL27_ARATH Disease resistance protein At4g27190 OS=Arabidopsis thaliana GN=At4g27190 PE=2 SV=1

 Score =  134 bits (338), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 121/422 (28%), Positives = 221/422 (52%), Gaps = 29/422 (6%)

Query: 1   MEKNVYLSIKLSYDFLRSEEAKSMFRLCGLYSEGHAIPVPYLLRYGVGWGLFENVYTLEE 60
           +E+ ++  +KLSYDFL  ++AK  F LC L+ E ++I V  ++RY +  G  E + + E+
Sbjct: 375 IEEKIFQPLKLSYDFL-EDKAKFCFLLCALFPEDYSIEVTEVVRYWMAEGFMEELGSQED 433

Query: 61  ARSRVHRLIDNLKSSCLLLDGDAEDEVKMHDIIHVVAVSVAAETRMFNIPNVADLEKKME 120
           + +     +++LK  CLL DGD  D VKMHD++   A+ + + ++  +  +   +     
Sbjct: 434 SMNEGITTVESLKDYCLLEDGDRRDTVKMHDVVRDFAIWIMSSSQ--DDSHSLVMSGTGL 491

Query: 121 ETIRKDPIA-----ISLPQRNIQELPERLQCPNLQLFLLFRQG-YGPVQISDLFFEGTEE 174
           + IR+D +A     +SL    ++ LP+ ++   ++  +L  QG +   ++   F +    
Sbjct: 492 QDIRQDKLAPSLRRVSLMNNKLESLPDLVEEFCVKTSVLLLQGNFLLKEVPIGFLQAFPT 551

Query: 175 LKVLSLIGIHFSSLPS-SLGRLINLQTLCLDWC-QLEDVAAIGQLKKLEILNLADSNIEQ 232
           L++L+L G    S PS SL RL +L +L L  C +L  + ++  L KLE+L+L  ++I +
Sbjct: 552 LRILNLSGTRIKSFPSCSLLRLFSLHSLFLRDCFKLVKLPSLETLAKLELLDLCGTHILE 611

Query: 233 LPLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNSFSGWEKVEGGS---NA 289
            P  + +L   R LDL+    L+ I   V+S+LS LE L M +S   W  V+G +    A
Sbjct: 612 FPRGLEELKRFRHLDLSRTLHLESIPARVVSRLSSLETLDMTSSHYRWS-VQGETQKGQA 670

Query: 290 SLVELKRLTKLTTLEIEVRDAEILLPDFVS--VELQRYRIRIGDKLEYEIDQLLVKSEAL 347
           ++ E+  L +L  L I +  +  LL    +    L+++++ +G +       L  + +  
Sbjct: 671 TVEEIGCLQRLQVLSIRLHSSPFLLNKRNTWIKRLKKFQLVVGSRY-----ILRTRHDKR 725

Query: 348 RLMMLKGLEKVSILQENDGTKMLLQRTEDLWLVKLEGVQNVVHEL-DDGEGFPRLKHLHV 406
           RL     +  +++ Q + G   LL  T  L L   +G++ ++ +L  D +GF  LK L +
Sbjct: 726 RLT----ISHLNVSQVSIG--WLLAYTTSLALNHCQGIEAMMKKLVSDNKGFKNLKSLTI 779

Query: 407 ES 408
           E+
Sbjct: 780 EN 781

Disease resistance protein.
Arabidopsis thaliana (taxid: 3702)

>sp|O81825|DRL28_ARATH Probable disease resistance protein At4g27220 OS=Arabidopsis thaliana GN=At4g27220 PE=2 SV=1

 Score =  127 bits (319), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 100/321 (31%), Positives = 171/321 (53%), Gaps = 21/321 (6%)

Query: 2   EKNVYLSIKLSYDFLRSEEAKSMFRLCGLYSEGHAIPVPYLLRYGVGWGLFENVYTLEEA 61
           E+ ++ ++KLSYDFL+ +  KS F  C L+ E ++I V  L+ Y V  GL +  +  E+ 
Sbjct: 345 EEKIFGTLKLSYDFLQ-DNMKSCFLFCALFPEDYSIKVSELIMYWVAEGLLDGQHHYEDM 403

Query: 62  RSRVHRLIDNLKSSCLLLDGDAEDEVKMHDIIHVVAV-SVAAETRMFNIPNVADL----- 115
            +    L++ LK SCLL DGD+ D VKMHD++   A+  ++++   F+   +A       
Sbjct: 404 MNEGVTLVERLKDSCLLEDGDSCDTVKMHDVVRDFAIWFMSSQGEGFHSLVMAGRGLIEF 463

Query: 116 -EKKMEETIRKDPIAISLPQRNIQELPERLQCPNLQLFLLFRQGYGPV-QISDLFFEGTE 173
            + K   ++++    +SL    ++ LP  +    ++  +L  QG   V ++ + F +   
Sbjct: 464 PQDKFVSSVQR----VSLMANKLERLPNNV-IEGVETLVLLLQGNSHVKEVPNGFLQAFP 518

Query: 174 ELKVLSLIGIHFSSLPSSLGRLINLQTLCLDWC-QLEDVAAIGQLKKLEILNLADSNIEQ 232
            L++L L G+   +LP S   L +L++L L  C +L ++ ++  L KL+ L+L +S I +
Sbjct: 519 NLRILDLSGVRIRTLPDSFSNLHSLRSLVLRNCKKLRNLPSLESLVKLQFLDLHESAIRE 578

Query: 233 LPLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNSFSGW----EKVEGGSN 288
           LP  +  L+ LR + ++N + LQ I    I +LS LE L M  S   W    E+ EG   
Sbjct: 579 LPRGLEALSSLRYICVSNTYQLQSIPAGTILQLSSLEVLDMAGSAYSWGIKGEEREG--Q 636

Query: 289 ASLVELKRLTKLTTLEIEVRD 309
           A+L E+  L  L  L I++ D
Sbjct: 637 ATLDEVTCLPHLQFLAIKLLD 657

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q42484|RPS2_ARATH Disease resistance protein RPS2 OS=Arabidopsis thaliana GN=RPS2 PE=1 SV=1

 Score =  123 bits (309), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 99/318 (31%), Positives = 152/318 (47%), Gaps = 34/318 (10%)

Query: 5   VYLSIKLSYDFLRSEEAKSMFRLCGLYSEGHAIPVPYLLRYGVGWGLFENVYTLEEARSR 64
           V+  +K SYD L S+  +S F  C L+ E H+I +  L+ Y VG G   + + +     +
Sbjct: 388 VFALLKFSYDNLESDLLRSCFLYCALFPEEHSIEIEQLVEYWVGEGFLTSSHGVNTIY-K 446

Query: 65  VHRLIDNLKSSCLLLDGDAEDEVKMHDIIHVVAVSVAAETRMFNI-----PNVADLEKKM 119
            + LI +LK++CLL  GD + +VKMH+++   A+ +A+E   +       P++   E   
Sbjct: 447 GYFLIGDLKAACLLETGDEKTQVKMHNVVRSFALWMASEQGTYKELILVEPSMGHTEAPK 506

Query: 120 EETIRKDPIAISLPQRNIQELPERLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLS 179
            E  R+  + ISL    IQ LPE+L CP L   +L +Q     +I   FF     L+VL 
Sbjct: 507 AENWRQ-ALVISLLDNRIQTLPEKLICPKLTTLML-QQNSSLKKIPTGFFMHMPVLRVLD 564

Query: 180 LIGIHFSSLPSSLGRLINLQTLCLDWCQLEDVAAIGQLKKLEILNLADSNIEQLPLEIGQ 239
           L     + +P S+  L+ L  L                      +++ + I  LP E+G 
Sbjct: 565 LSFTSITEIPLSIKYLVELYHL----------------------SMSGTKISVLPQELGN 602

Query: 240 LTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNSFSGWEKVEGGSNAS----LVELK 295
           L  L+ LDL     LQ I  + I  LS+LE L +  S++GWE    G + +      +L+
Sbjct: 603 LRKLKHLDLQRTQFLQTIPRDAICWLSKLEVLNLYYSYAGWELQSFGEDEAEELGFADLE 662

Query: 296 RLTKLTTLEIEVRDAEIL 313
            L  LTTL I V   E L
Sbjct: 663 YLENLTTLGITVLSLETL 680

Disease resistance (R) protein that specifically recognizes the AvrRpt2 type III effector avirulence protein from Pseudomonas syringae. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Acts via its interaction with RIN4, and probably triggers the plant resistance when RIN4 is degraded by AvrRpt2.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LVT4|DRL37_ARATH Probable disease resistance protein At5g47250 OS=Arabidopsis thaliana GN=At5g47250 PE=2 SV=1

 Score = 83.2 bits (204), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 77/275 (28%), Positives = 133/275 (48%), Gaps = 32/275 (11%)

Query: 2   EKNVYLSIKLSYDFLRSEEAKSMFRLCGLYSEGHAIPVPYLLRYGVGWGLFENVYTLEEA 61
           EK ++  +KLSYD+L+++ AK  F  C L+ + + I    L+ Y +G G  +     E A
Sbjct: 386 EKGIFQVLKLSYDYLKTKNAKC-FLYCALFPKAYYIKQDELVEYWIGEGFIDEKDGRERA 444

Query: 62  RSRVHRLIDNLKSSCLLLDGDAEDEVKMHDIIHVVAVSVAAETR---MFNIPNVADLEKK 118
           + R + +IDNL  + LLL+ +   +V MHD+I  +A+ + +E R    + +   A L + 
Sbjct: 445 KDRGYEIIDNLVGAGLLLESNK--KVYMHDMIRDMALWIVSEFRDGERYVVKTDAGLSQL 502

Query: 119 MEETIRKDPIAISLPQRNIQELPERLQCPN-LQLFLLFRQGYGPVQISDLFFEGTEELKV 177
            + T       +SL    I+ +P+  + P+   L  LF Q    V I   FF     L V
Sbjct: 503 PDVTDWTTVTKMSLFNNEIKNIPDDPEFPDQTNLVTLFLQNNRLVDIVGKFFLVMSTLVV 562

Query: 178 LSL-IGIHFSSLPSSLGRLINLQTLCLDWCQLEDVAAIGQLKKLEILNLADSNIEQLPLE 236
           L L      + LP  +  L++L+                      +LNL+ ++I+ LP  
Sbjct: 563 LDLSWNFQITELPKGISALVSLR----------------------LLNLSGTSIKHLPEG 600

Query: 237 IGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEEL 271
           +G L+ L  L+L +  +L+ +   +IS+L +L+ L
Sbjct: 601 LGVLSKLIHLNLESTSNLRSVG--LISELQKLQVL 633

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|O82484|DRL23_ARATH Putative disease resistance protein At4g10780 OS=Arabidopsis thaliana GN=At4g10780 PE=2 SV=1

 Score = 77.4 bits (189), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 82/291 (28%), Positives = 127/291 (43%), Gaps = 49/291 (16%)

Query: 1   MEKNVYLSIKLSYDFLRSEEAKSMFRLCGLYSEGHAIPVPYLLRYGVGWGLFENVYTLEE 60
           M+ ++ L +K SYD L  +  +S F+ C LY E ++I    L+ Y +  G  +     E 
Sbjct: 385 MDDHILLILKYSYDNLNDKHVRSCFQYCALYPEDYSIKKYRLIDYWICEGFIDGNIGKER 444

Query: 61  ARSRVHRLIDNLKSSCLLL-DGDAEDEVKMHDIIHVVAVS-------------VAAETRM 106
           A ++ + ++  L  +CLL  +G  + EVKMHD++  +A+              V A + +
Sbjct: 445 AVNQGYEILGTLVRACLLSEEGKNKLEVKMHDVVREMALWTLSDLGKNKERCIVQAGSGL 504

Query: 107 FNIPNVADLEKKMEETIRKDPIAISLPQRNIQELPERLQCPNLQLFLLFRQGYGPVQISD 166
             +P V D        +R+    +SL    I+E+    +CP L   L  ++    V IS 
Sbjct: 505 RKVPKVEDW-----GAVRR----LSLMNNGIEEISGSPECPELTT-LFLQENKSLVHISG 554

Query: 167 LFFEGTEELKVLSLIGIH-FSSLPSSLGRLINLQTLCLDWCQLEDVAAIGQLKKLEILNL 225
            FF    +L VL L   H    LP  +  L+ L+                       L+L
Sbjct: 555 EFFRHMRKLVVLDLSENHQLDGLPEQISELVALR----------------------YLDL 592

Query: 226 ADSNIEQLPLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNS 276
           + +NIE LP  +  L  L  L+L     L  IA   ISKLS L  L + NS
Sbjct: 593 SHTNIEGLPACLQDLKTLIHLNLECMRRLGSIAG--ISKLSSLRTLGLRNS 641

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8RXS5|DRL40_ARATH Probable disease resistance protein At5g63020 OS=Arabidopsis thaliana GN=At5g63020 PE=2 SV=2

 Score = 77.4 bits (189), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 77/254 (30%), Positives = 126/254 (49%), Gaps = 11/254 (4%)

Query: 1   MEKNVYLSIKLSYDFLRSEEAKSMFRLCGLYSEGHAIPVPYLLRYGVGWGLFENVYTLEE 60
           ME  +   +K SYD L+SE+ K  F+ C L+ E H I    L+ Y +G G  +      +
Sbjct: 386 MEDEILPILKYSYDNLKSEQLKLCFQYCALFPEDHNIEKNDLVDYWIGEGFIDR--NKGK 443

Query: 61  ARSRVHRLIDNLKSSCLLLDGDAEDEVKMHDIIHVVAVSVAAE--TRMFNIPNVADLEKK 118
           A ++ + +I  L  SCLL++ + E  VKMHD++  +A+ +A++   +  N    A L+ +
Sbjct: 444 AENQGYEIIGILVRSCLLMEENQET-VKMHDVVREMALWIASDFGKQKENFIVQAGLQSR 502

Query: 119 MEETIRKDPIA--ISLPQRNIQELPERLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELK 176
               I K  +A  +SL   NI+ + +  + P L   LL +   G   IS  FF     L 
Sbjct: 503 NIPEIEKWKVARRVSLMFNNIESIRDAPESPQLITLLLRKNFLG--HISSSFFRLMPMLV 560

Query: 177 VLSL-IGIHFSSLPSSLGRLINLQTLCLDWCQLED-VAAIGQLKKLEILNLADSNIEQLP 234
           VL L +      LP+ +   ++LQ L L   ++    A + +L+KL  LNL  + + +  
Sbjct: 561 VLDLSMNRDLRHLPNEISECVSLQYLSLSRTRIRIWPAGLVELRKLLYLNLEYTRMVESI 620

Query: 235 LEIGQLTGLRLLDL 248
             I  LT L++L L
Sbjct: 621 CGISGLTSLKVLRL 634

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|P60838|DRL1_ARATH Probable disease resistance protein At1g12280 OS=Arabidopsis thaliana GN=At1g12280 PE=3 SV=1

 Score = 68.9 bits (167), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 66/234 (28%), Positives = 113/234 (48%), Gaps = 28/234 (11%)

Query: 9   IKLSYDFLRSEEAKSMFRLCGLYSEGHAIPVPYLLRYGVGWGLFENVYTLEEARSRVHRL 68
           +K SYD L  E+ K  F  C L+ E + +    L+ Y +  G  +   + E A S+ + +
Sbjct: 395 LKYSYDNLNKEQVKPCFLYCSLFPEDYRMEKERLIDYWICEGFIDENESRERALSQGYEI 454

Query: 69  IDNLKSSCLLL-DGDAEDEVKMHDIIHVVAVSVAAE-------------TRMFNIPNVAD 114
           I  L  +CLLL +   +++VKMHD++  +A+ +A++               +  +P V +
Sbjct: 455 IGILVRACLLLEEAINKEQVKMHDVVREMALWIASDLGEHKERCIVQVGVGLREVPKVKN 514

Query: 115 LEKKMEETIRKDPIAISLPQRNIQELPERLQCPNLQLFLLFRQGYGP-VQISDLFFEGTE 173
                  ++R+    +SL +  I+ L    +C  L+L  LF Q     + ISD FF    
Sbjct: 515 W-----SSVRR----MSLMENEIEILSGSPEC--LELTTLFLQKNDSLLHISDEFFRCIP 563

Query: 174 ELKVLSLIG-IHFSSLPSSLGRLINLQTLCLDWCQLEDV-AAIGQLKKLEILNL 225
            L VL L G      LP+ + +L++L+ L L W  ++ +   + +LKKL  L L
Sbjct: 564 MLVVLDLSGNSSLRKLPNQISKLVSLRYLDLSWTYIKRLPVGLQELKKLRYLRL 617

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8L3R3|RFL1_ARATH Disease resistance protein RFL1 OS=Arabidopsis thaliana GN=RFL1 PE=3 SV=2

 Score = 67.8 bits (164), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 76/268 (28%), Positives = 117/268 (43%), Gaps = 30/268 (11%)

Query: 1   MEKNVYLSIKLSYDFLRSEEAKSMFRLCGLYSEGHAIPVPYLLRYGVGWGLFENVYTLEE 60
           ME  +   +K SYD L  E+AKS F  C L+ E   I    L+ Y +  G  +     E+
Sbjct: 387 MEDEILPILKYSYDSLNGEDAKSCFLYCSLFPEDFEIRKEMLIEYWICEGFIKEKQGREK 446

Query: 61  ARSRVHRLIDNLKSSCLLLDGDAE-DEVKMHDIIHVVAVSVAAETRMFNIPNVADLEKKM 119
           A ++ + ++  L  S LLL+G  + D V MHD++  +A+ +            +DL K  
Sbjct: 447 AFNQGYDILGTLVRSSLLLEGAKDKDVVSMHDMVREMALWI-----------FSDLGKHK 495

Query: 120 EETIRKDPIAI---------------SLPQRNIQELPERLQCPNLQLFLLFRQGYGPVQI 164
           E  I +  I +               SL   N +++    +C  L + L  +  Y  V I
Sbjct: 496 ERCIVQAGIGLDELPEVENWRAVKRMSLMNNNFEKILGSPECVEL-ITLFLQNNYKLVDI 554

Query: 165 SDLFFEGTEELKVLSLIGIH-FSSLPSSLGRLINLQTLCLDWCQLEDVA-AIGQLKKLEI 222
           S  FF     L VL L   H  S LP  +  L++LQ L L    +E +   + +L+KL  
Sbjct: 555 SMEFFRCMPSLAVLDLSENHSLSELPEEISELVSLQYLDLSGTYIERLPHGLHELRKLVH 614

Query: 223 LNLADSNIEQLPLEIGQLTGLRLLDLTN 250
           L L  +   +    I  L+ LR L L +
Sbjct: 615 LKLERTRRLESISGISYLSSLRTLRLRD 642

Disease resistance (R) protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SH22|DRL20_ARATH Probable disease resistance protein At1g63360 OS=Arabidopsis thaliana GN=At1g63360 PE=2 SV=1

 Score = 67.8 bits (164), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 81/299 (27%), Positives = 131/299 (43%), Gaps = 44/299 (14%)

Query: 1   MEKNVYLSIKLSYDFLRSEEAKSMFRLCGLYSEGHAIPVPYLLRYGVGWGLFENVYTLEE 60
           ME  V   +K SYD L+ E+ KS    C LY E   I    L+ + +   + +    +E+
Sbjct: 384 MEDKVLPLLKYSYDNLKGEQVKSSLLYCALYPEDAKILKEDLIEHWICEEIIDGSEGIEK 443

Query: 61  ARSRVHRLIDNLKSSCLLL---DGDAEDEVKMHDIIHVVAVSVAAE-------------T 104
           A  + + +I  L  + LL+   DGD    V MHD++  +A+ +A+E              
Sbjct: 444 AEDKGYEIIGCLVRASLLMEWDDGDGRRAVCMHDVVREMALWIASELGIQKEAFIVRAGV 503

Query: 105 RMFNIPNVADLEKKMEETIRKDPIAISLPQRNIQELPERLQCPNLQLFLLFRQGYGPVQ- 163
            +  IP + +        +R+    +SL +  I  L    +C  L   LL ++ YG ++ 
Sbjct: 504 GVREIPKIKNW-----NVVRR----MSLMENKIHHLVGSYECMELTTLLLGKREYGSIRS 554

Query: 164 ----ISDLFFEGTEELKVLSLIGIHFSS---LPSSLGRLINLQTLCLDWCQLEDVA-AIG 215
               IS  FF    +L VL L   H  S   LP  +  L++L+ L L + ++  +   I 
Sbjct: 555 QLKTISSEFFNCMPKLAVLDL--SHNKSLFELPEEISNLVSLKYLNLLYTEISHLPKGIQ 612

Query: 216 QLKKLEILNLADSNIEQLPLEIGQLTGLRLLDLTNC---WSLQVIAPNVISKLSRLEEL 271
           +LKK+  LNL  +   +    I  L  L++L L      W L     N + +L  LE L
Sbjct: 613 ELKKIIHLNLEYTRKLESITGISSLHNLKVLKLFRSRLPWDL-----NTVKELETLEHL 666

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|O64973|RPS5_ARATH Disease resistance protein RPS5 OS=Arabidopsis thaliana GN=RPS5 PE=1 SV=2

 Score = 66.2 bits (160), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 76/266 (28%), Positives = 115/266 (43%), Gaps = 27/266 (10%)

Query: 1   MEKNVYLSIKLSYDFLRSEEAKSMFRLCGLYSEGHAIPVPYLLRYGVGWGLFENVYTLEE 60
           ME  +   +K SYD L  E  KS F  C L+ E + I    L+ Y +  G        E 
Sbjct: 388 MEDEILHVLKYSYDNLNGELMKSCFLYCSLFPEDYLIDKEGLVDYWISEGFINEKEGRER 447

Query: 61  ARSRVHRLIDNLKSSCLLLDGD-AEDEVKMHDIIHVVAVSVAAE-------------TRM 106
             ++ + +I  L  +CLLL+ +  +  VKMHD++  +A+ ++++               +
Sbjct: 448 NINQGYEIIGTLVRACLLLEEERNKSNVKMHDVVREMALWISSDLGKQKEKCIVRAGVGL 507

Query: 107 FNIPNVADLEKKMEETIRKDPIAISLPQRNIQELPERLQCPNLQLFLLFRQGYGPVQISD 166
             +P V D       T+RK    ISL    I+E+ +  +C  L    LF Q    V+IS 
Sbjct: 508 REVPKVKDW-----NTVRK----ISLMNNEIEEIFDSHECAALT--TLFLQKNDVVKISA 556

Query: 167 LFFEGTEELKVLSLI-GIHFSSLPSSLGRLINLQTLCLDW-CQLEDVAAIGQLKKLEILN 224
            FF     L VL L      + LP  +  L +L+   L + C  +    +  LKKL  LN
Sbjct: 557 EFFRCMPHLVVLDLSENQSLNELPEEISELASLRYFNLSYTCIHQLPVGLWTLKKLIHLN 616

Query: 225 LADSNIEQLPLEIGQLTGLRLLDLTN 250
           L   +     L I  L  LR L L +
Sbjct: 617 LEHMSSLGSILGISNLWNLRTLGLRD 642

Disease resistance (R) protein that specifically recognizes the avrPphB type III effector avirulence protein from Pseudomonas syringae. Also confers resistance against Hyaloperonospora parasitica (downy mildew). Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Requires PBS1 to trigger the defense reaction against avrPphB. Probably triggers the defense mechanism when PBS1 is cleaved by avrPphB, suggesting that it detects indirectly the protease activity of avrPphB, and possibly binds to the cleaved RPS5.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	421
224111296	1315	cc-nbs-lrr resistance protein [Populus t	0.964	0.308	0.456	1e-88
255563252	1603	Disease resistance protein RPS5, putativ	0.976	0.256	0.452	2e-86
255542484	2460	phosphoprotein phosphatase, putative [Ri	0.945	0.161	0.467	3e-86
224125154	949	cc-nbs-lrr resistance protein [Populus t	0.961	0.426	0.459	5e-86
224111284	1340	cc-nbs-lrr resistance protein [Populus t	0.964	0.302	0.459	2e-83
359488103	1530	PREDICTED: disease resistance protein At	0.964	0.265	0.462	3e-81
359488095	1347	PREDICTED: probable disease resistance p	0.964	0.301	0.457	3e-81
147865073	1694	hypothetical protein VITISV_021876 [Viti	0.964	0.239	0.460	3e-81
296087872	1152	unnamed protein product [Vitis vinifera]	0.964	0.352	0.456	2e-80
359488027	1520	PREDICTED: disease resistance protein At	0.964	0.267	0.456	2e-80

>gi|224111296|ref|XP_002332952.1| cc-nbs-lrr resistance protein [Populus trichocarpa] gi|222834264|gb|EEE72741.1| cc-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  333 bits (854), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 195/427 (45%), Positives = 279/427 (65%), Gaps = 21/427 (4%)

Query: 1   MEKNVYLSIKLSYDFLRSEEAKSMFRLCGLYSEGHAIPVPYLLRYGVGWGLFENVYTLEE 60
           ++  VYL ++LSY  LR +E KS+F LCG     + I +  LLRYG+G  LF+   TLEE
Sbjct: 373 IDDQVYLGLELSYKSLRGDEIKSLFLLCGQLRSNN-ILISDLLRYGIGLDLFKGCSTLEE 431

Query: 61  ARSRVHRLIDNLKSSCLLLDGDAEDEVKMHDIIHVVAVSVAAETRMFNIPNVADLEKKME 120
            R+ +  L+D LK+SCLLL+GD +  VKMHD++H  A+SVA   R  ++  VAD  K+  
Sbjct: 432 TRNSLLTLVDELKASCLLLEGDKDGSVKMHDVVHSFAISVA--LRDHHVLTVADEFKEWP 489

Query: 121 ET-IRKDPIAISLPQRNIQELPERLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLS 179
              + +   AISLP R I +LP  L+CPNL  FLL  +    +QI D FF   +ELK+L 
Sbjct: 490 ANDVLQQYTAISLPFRKIPDLPAILECPNLNSFLLLNKDPS-LQIPDSFFREMKELKILD 548

Query: 180 LIGIHFSSLPSSLGRLINLQTLCLDWCQLEDVAAIGQLKKLEILNLADSNIEQLPLEIGQ 239
           L  ++ S LPSSL  L NLQTLCLD C LED++ IG+L KL++L+L  SNI +LP EIG+
Sbjct: 549 LTEVNLSPLPSSLQFLENLQTLCLDHCVLEDISIIGELNKLKVLSLMSSNIVRLPREIGK 608

Query: 240 LTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNSFSGWEKVEGGS----NASLVELK 295
           +T L+LLDL+NC  L+VI+PN +S L+RLE+LYM NSF  WE  EG S    NA L ELK
Sbjct: 609 VTRLQLLDLSNCERLEVISPNALSSLTRLEDLYMGNSFVKWE-TEGSSSQRNNACLSELK 667

Query: 296 RLTKLTTLEIEVRDAEILLPDFVSV--ELQRYRIRIGDKLEYEIDQLLVKSEALRLMMLK 353
            L+ L+TL +++ DA+ +  D  S    L+R+RI IGD  ++ +     ++  L+L    
Sbjct: 668 HLSNLSTLHMQITDADNMPKDLFSSFQNLERFRIFIGDGWDWSVKDATSRTLKLKLN--- 724

Query: 354 GLEKVSILQENDGTKMLLQRTEDLWLVKLEGVQNVVHELDDGEGFPRLKHLHVESCYEIV 413
                +++Q  +G   LL+ TE+L L +L GV++++++L DGEGFP+L+HLHV++C  + 
Sbjct: 725 -----TVIQLEEGVNTLLKITEELHLQELNGVKSILNDL-DGEGFPQLRHLHVQNCPGVQ 778

Query: 414 HIVGSVR 420
           +I+ S+R
Sbjct: 779 YIINSIR 785

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255563252|ref|XP_002522629.1| Disease resistance protein RPS5, putative [Ricinus communis] gi|223538105|gb|EEF39716.1| Disease resistance protein RPS5, putative [Ricinus communis]

 Score =  325 bits (834), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 192/424 (45%), Positives = 276/424 (65%), Gaps = 13/424 (3%)

Query: 1   MEKNVYLSIKLSYDFLRSEEAKSMFRLCGLYSEGHAIPVPYLLRYGVGWGLFENVYTLEE 60
           +++ VY +++LSY+ L   E KS+F LCGL  +   I +  LL Y  G GLF+ + TL +
Sbjct: 379 IQEKVYSALELSYNHLIGAEVKSLFLLCGLLGKSD-IAILDLLMYSTGLGLFKGIDTLGD 437

Query: 61  ARSRVHRLIDNLKSSCLLLDGDAEDEVKMHDIIHVVAVSVAAETR-MFNIPNVADLEKKM 119
           AR+RVH+LI +LK++CLLLD D +  VK+HD++  VA+S+A+  + +F + N A L++  
Sbjct: 438 ARNRVHKLISDLKAACLLLDSDIKGRVKIHDVVRDVAISIASRMQHLFTVRNGALLKEWP 497

Query: 120 EETIRKDPIAISLPQRNIQELPERLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLS 179
            + + K    ISLP  +I  LPE L+CP L+LFLLF Q    +++ DL FE T+ L+VL+
Sbjct: 498 NKDVCKSCTRISLPYNDIHGLPEVLECPELELFLLFTQDIS-LKVPDLCFELTKNLRVLN 556

Query: 180 LIGIHFSSLPSSLGRLINLQTLCLDWCQLEDVAAIGQLKKLEILNLADSNIEQLPLEIGQ 239
             G+HFSSLP SLG L NL TLCLDWC L DVA IG+L  L IL+   S+I +LP EI Q
Sbjct: 557 FTGMHFSSLPPSLGFLKNLFTLCLDWCALRDVAIIGELTGLTILSFKHSDIVELPREIRQ 616

Query: 240 LTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNSFSGW--EKVEGGSNASLVELKRL 297
           LT L+ LDL++C  L+VI   +IS+L++LEELYM+NSF  W  + +    NASL EL+ L
Sbjct: 617 LTKLKFLDLSHCLKLKVIPAKIISELTQLEELYMNNSFDLWDVQGINNQRNASLAELECL 676

Query: 298 TKLTTLEIEVRDAEILLPDFVSVELQRYRIRIGDKLEYEIDQLLVKSEALRLMMLKGLEK 357
             LTTLEI V DA+IL  D    +L+R+RI IGD      D    ++  L+L        
Sbjct: 677 PYLTTLEICVLDAKILPKDLFFRKLERFRIFIGDVWSGTGDYGTSRTLKLKL-------N 729

Query: 358 VSILQENDGTKMLLQRTEDLWLVKLEGVQNVVHELDDGEGFPRLKHLHVESCYEIVHIVG 417
            S +    G  +LL+ TEDL+L +++G+++V+++L D +GF +LKHL V++  EI +I+ 
Sbjct: 730 TSSIHLEHGLSILLEVTEDLYLAEVKGIKSVLYDL-DSQGFTQLKHLDVQNDPEIQYIID 788

Query: 418 SVRR 421
             RR
Sbjct: 789 PNRR 792

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255542484|ref|XP_002512305.1| phosphoprotein phosphatase, putative [Ricinus communis] gi|223548266|gb|EEF49757.1| phosphoprotein phosphatase, putative [Ricinus communis]

 Score =  325 bits (833), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 194/415 (46%), Positives = 276/415 (66%), Gaps = 17/415 (4%)

Query: 6   YLSIKLSYDFLRSEEAKSMFRLCGLYSEGHAIPVPYLLRYGVGWGLFENVYTLEEARSRV 65
           Y ++KLSY+FL +EE KS+F LCG   + H I V  LL+Y +G GLF    T++ AR+R+
Sbjct: 334 YTALKLSYNFLGAEE-KSLFVLCGQL-KAHYIVVSDLLKYSLGLGLFNQRTTVKAARNRL 391

Query: 66  HRLIDNLKSSCLLLDGDAEDEVKMHDIIHVVAVSVAA-ETRMFNIPNVADLEKKMEETIR 124
            +++++LK SCLLL+GD +DEV+MHD++H  A  VA+ +  +F +   + LE+  E+ I 
Sbjct: 392 LKVVNDLKRSCLLLEGDDDDEVRMHDVVHNFATLVASRDHHVFAVACDSGLEEWPEKDIL 451

Query: 125 KDPIAISLPQRNIQELPERLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIH 184
           +   AISLP   I +LPE  +CP+LQ FLL+ +    ++I D FF   ++LK++ L  +H
Sbjct: 452 EQFTAISLPDCKIPKLPEVFECPDLQSFLLYNKD-SSLKIPDNFFSRMKKLKLMDLSNVH 510

Query: 185 FSSLPSSLGRLINLQTLCLDWCQLEDVAAIGQLKKLEILNLADSNIEQLPLEIGQLTGLR 244
            S +P SL  L NLQTLCLD C LED+AAIG+LKKL++L+   S + QLP E+G+LT L+
Sbjct: 511 LSPMPLSLQCLENLQTLCLDRCTLEDIAAIGELKKLQVLSFIGSTMVQLPREVGKLTRLQ 570

Query: 245 LLDLTNCWSLQVIAPNVISKLSRLEELYMDNSFSGWEKVEGG---SNASLVELKRLTKLT 301
           LLDL+ C  L+VI   V+S L++LEELYM NSF  WE  E     +NASL ELK L  L 
Sbjct: 571 LLDLSRCQKLEVIPKGVLSCLTKLEELYMGNSFVQWESEEHDGDRNNASLDELKLLPNLV 630

Query: 302 TLEIEVRDAEILLPDFVSVELQRYRIRIGDKLEYEIDQLLVKSEALRLMMLKGLEKVSIL 361
           TLE+ + +AEIL  D  S +L  Y++ IG++  +       K EA R + LK    + I 
Sbjct: 631 TLELHIINAEILPRDVFSEKLDLYKVFIGEEWSW-----FGKYEASRTLKLKLNSSIEI- 684

Query: 362 QENDGTKMLLQRTEDLWLVKLEGVQNVVHELDDGEGFPRLKHLHVESCYEIVHIV 416
              +  K+LL  TEDL+L +LEGV+NV++EL DG+GFP+LKHLH+++  EI +IV
Sbjct: 685 ---EKVKVLLMTTEDLYLDELEGVRNVLYEL-DGQGFPQLKHLHIQNSSEIQYIV 735

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224125154|ref|XP_002319513.1| cc-nbs-lrr resistance protein [Populus trichocarpa] gi|222857889|gb|EEE95436.1| cc-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  324 bits (831), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 195/424 (45%), Positives = 282/424 (66%), Gaps = 19/424 (4%)

Query: 1   MEKNVYLSIKLSYDFLRSEEAKSMFRLCGLYSEGHAIPVPYLLRYGVGWGLFENVYTLEE 60
           M+  V  +++LSYD L+ EE KS+F LCG   E H+I +  LL+Y VG GLF+ + TLEE
Sbjct: 377 MDSRVCSALELSYDSLKGEEIKSVFLLCGQL-EPHSIAILDLLKYTVGLGLFKRISTLEE 435

Query: 61  ARSRVHRLIDNLKSSCLLLDGDAEDEVKMHDIIHVVAVSVAA-ETRMFNIPNVADLEKKM 119
           AR+R+HRL+++LK+SCLLL+G A+  VKMHD++H  A  VA+ +  +F +   +D   K 
Sbjct: 436 ARNRLHRLVNDLKASCLLLEGGADGIVKMHDVVHGFAAFVASRDHHVFTL--ASDTVLKE 493

Query: 120 EETIRKDPIAISLPQRNIQELPERLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLS 179
              + +   AISLP+  I  LPE L  P  + F+L+ +    ++I D  F+GT+ L+++ 
Sbjct: 494 WPDMPEQCSAISLPRCKIPGLPEVLNFPKAESFILYNEDPS-LKIPDSLFKGTKTLQLVD 552

Query: 180 LIGIHFSSLPSSLGRLINLQTLCLDWCQLEDVAAIGQLKKLEILNLADSNIEQLPLEIGQ 239
           +  +   +LPSSL  L  LQTLCLD C L+D+A IG+LK L++L+L DSNI +LP EIGQ
Sbjct: 553 MTAVQLPTLPSSLQFLEKLQTLCLDSCGLKDIAMIGELKMLKVLSLIDSNIVRLPREIGQ 612

Query: 240 LTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNSFSGWEKVEG----GSNASLVELK 295
           LT L+LLDL+N   L++I PNV+S L++LE+LYM+NSF  W ++EG     +NASL ELK
Sbjct: 613 LTRLQLLDLSNNPRLEMIPPNVLSCLTQLEDLYMENSFLQW-RIEGLDSQRNNASLAELK 671

Query: 296 RLTKLTTLEIEVRDAEILLPDFVSVELQRYRIRIGDKLEYEIDQLLVKSEALRLMMLKGL 355
            L  L+TL + + D  IL  DF S +L+R++I IG+  ++       K E    M LK  
Sbjct: 672 YLPNLSTLHLHITDPMILPRDFFSKKLERFKILIGEGWDWS-----RKRETSTTMKLK-- 724

Query: 356 EKVSILQENDGTKMLLQRTEDLWLVKLEGVQNVVHELDDGEGFPRLKHLHVESCYEIVHI 415
              + +Q  +G ++LL+RTEDL L  L+GV++V +EL DG+GFPRLKHLH+++  EI +I
Sbjct: 725 -ISASIQSEEGIQLLLKRTEDLHLDGLKGVKSVSYEL-DGQGFPRLKHLHIQNSLEIRYI 782

Query: 416 VGSV 419
           V S 
Sbjct: 783 VDST 786

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224111284|ref|XP_002332949.1| cc-nbs-lrr resistance protein [Populus trichocarpa] gi|222834261|gb|EEE72738.1| cc-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  316 bits (809), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 196/427 (45%), Positives = 281/427 (65%), Gaps = 21/427 (4%)

Query: 1   MEKNVYLSIKLSYDFLRSEEAKSMFRLCGLYSEGHAIPVPYLLRYGVGWGLFENVYTLEE 60
           ++  VY  ++LSY  LR +E KS+F LCG +   +   +  LL+Y +G  LF+   TLEE
Sbjct: 373 IDNQVYSCLELSYKALRGDEIKSLFLLCGQFL-TYDSSISDLLKYAIGLDLFKGRSTLEE 431

Query: 61  ARSRVHRLIDNLKSSCLLLDGDAEDEVKMHDIIHVVAVSVAAETRMFNIPNVADLEKKME 120
           AR+R+  L+D LK+SCLLL+GD +  VKMHD++   A SVA  +R  ++  VAD  K+  
Sbjct: 432 ARNRLRTLVDELKASCLLLEGDKDGRVKMHDVVQSFAFSVA--SRDHHVLIVADEFKEWP 489

Query: 121 ET-IRKDPIAISLPQRNIQELPERLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLS 179
            + + +   AISLP R I +LP  L+CPNL  F+L  +    +QI D FF   +ELKVL 
Sbjct: 490 TSDVLQQYTAISLPYRKIPDLPAILECPNLNSFILLNKDPS-LQIPDNFFREMKELKVLD 548

Query: 180 LIGIHFSSLPSSLGRLINLQTLCLDWCQLEDVAAIGQLKKLEILNLADSNIEQLPLEIGQ 239
           L  ++ S LPSSL  L NLQTLCLD C LED++ +G+LKKL++L+L  S+I  LP EIG+
Sbjct: 549 LTRVNLSPLPSSLQFLENLQTLCLDGCVLEDISIVGELKKLKVLSLISSDIVCLPREIGK 608

Query: 240 LTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNSFSGWEKVEGGS----NASLVELK 295
           LT L LLDL+NC  L+VI+PNV+S L+RLEELYM NSF  WE  EG S    NA L ELK
Sbjct: 609 LTRLLLLDLSNCERLEVISPNVLSSLTRLEELYMGNSFVKWE-TEGSSSQRNNACLSELK 667

Query: 296 RLTKLTTLEIEVRDAEILLPD--FVSVELQRYRIRIGDKLEYEIDQLLVKSEALRLMMLK 353
           RL+ L TL +++ DA+ +L D  F+  +L+R+RI IGD  ++ +     ++  L+L    
Sbjct: 668 RLSNLITLHMQITDADNMLKDLSFLFQKLERFRIFIGDGWDWSVKYATSRTLKLKLN--- 724

Query: 354 GLEKVSILQENDGTKMLLQRTEDLWLVKLEGVQNVVHELDDGEGFPRLKHLHVESCYEIV 413
                +++Q  +    LL+ TE+L L +L+GV++++++L DGE FPRLKHLHV++C  + 
Sbjct: 725 -----TVIQLEEWVNTLLKSTEELHLQELKGVKSILNDL-DGEDFPRLKHLHVQNCPGVQ 778

Query: 414 HIVGSVR 420
           +I+ S+R
Sbjct: 779 YIINSIR 785

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359488103|ref|XP_002263579.2| PREDICTED: disease resistance protein At4g27190-like [Vitis vinifera]

 Score =  308 bits (790), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 195/422 (46%), Positives = 264/422 (62%), Gaps = 16/422 (3%)

Query: 1   MEKNVYLSIKLSYDFLRSEEAKSMFRLCGLYSEGHAIPVPYLLRYGVGWGLFENVYTLEE 60
           ME  VY S+KLSY+ L  +E KS+  LCGL+S    I +  LL+YGVG  LF+   TLEE
Sbjct: 378 METKVYSSLKLSYEHLEGDEVKSLCLLCGLFS--RYIHIRDLLKYGVGLRLFQGTNTLEE 435

Query: 61  ARSRVHRLIDNLKSSCLLLDGDAEDEVKMHDIIHVVAVSVAAETRMFNIPNVADLEKKME 120
            ++R+  L+DNLKSS  LL+      V+MHD++   A  +A+E    ++        ++E
Sbjct: 436 VKNRIDTLVDNLKSSNFLLETGRNAVVRMHDLVRSTARKIASEQH--HVFTHQKTTVRVE 493

Query: 121 ETIRKDPIAIS---LPQRNIQELPERLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKV 177
           E  R D + ++   L   +I ELPE L CP L+ F  F +    V+I + FFEG ++LKV
Sbjct: 494 EWSRIDELQVTWVKLHHCDIHELPEGLVCPKLEFFECFLKTNLAVKIPNTFFEGMKQLKV 553

Query: 178 LSLIGIHFSSLPSSLGRLINLQTLCLDWCQLEDVAAIGQLKKLEILNLADSNIEQLPLEI 237
           L L G+   SLP SL  L NL+TLCLD C+L D+  I +LKKLEIL+L DS+IEQLP EI
Sbjct: 554 LDLTGMQLPSLPLSLQSLANLRTLCLDGCKLGDIVIIAELKKLEILSLMDSDIEQLPREI 613

Query: 238 GQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNSFSGWEKVEGGSNASLVELKRL 297
            QLT LRL DL + + L+VI  +VIS L RLE+L M+NSF+ WE  EG SNA L ELK L
Sbjct: 614 AQLTHLRLFDLKSSFKLKVIPSDVISSLFRLEDLCMENSFTQWEG-EGKSNACLAELKHL 672

Query: 298 TKLTTLEIEVRDAEILLPDFVSVELQRYRIRIGDKLEYEIDQLLVKSEALRLMMLKGLEK 357
           + LT L+I++ DA++L  D V   L RYRI +GD   +E +      +  R++ L   + 
Sbjct: 673 SHLTALDIQIPDAKLLPKDMVFDNLMRYRIFVGDIWIWEKNY-----KTNRILKLNKFD- 726

Query: 358 VSILQENDGTKMLLQRTEDLWLVKLEGVQNVVHELDDGEGFPRLKHLHVESCYEIVHIVG 417
            + L   DG   LL+RTEDL L +L G  NV+ +L+  EGF +LKHL+VES  EI +IV 
Sbjct: 727 -TSLHLVDGISKLLKRTEDLHLRELCGGTNVLSKLNR-EGFLKLKHLNVESSPEIQYIVN 784

Query: 418 SV 419
           S+
Sbjct: 785 SM 786

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359488095|ref|XP_002270726.2| PREDICTED: probable disease resistance protein At4g27220-like [Vitis vinifera]

 Score =  308 bits (789), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 193/422 (45%), Positives = 265/422 (62%), Gaps = 16/422 (3%)

Query: 1   MEKNVYLSIKLSYDFLRSEEAKSMFRLCGLYSEGHAIPVPYLLRYGVGWGLFENVYTLEE 60
           ME  VY S+KLSY+ L  +E KS+  LCGL+S    I +  LL+YGVG  LF+   TLEE
Sbjct: 378 METKVYSSLKLSYEHLEGDEVKSLCLLCGLFSSD--IHIGDLLKYGVGLRLFQGTNTLEE 435

Query: 61  ARSRVHRLIDNLKSSCLLLDGDAEDEVKMHDIIHVVAVSVAAETRMFNIPNVADLEKKME 120
           A++R+  L+DNLKSS  LL+ D    V+MHD++   A  +A+E R  ++        ++E
Sbjct: 436 AKNRIDTLVDNLKSSNFLLETDHNAYVRMHDLVRSTARKIASEQR--HVFTHQKTTVRVE 493

Query: 121 ETIRKDPIAIS---LPQRNIQELPERLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKV 177
           E  R D + ++   L   +I ELPE L CP L+ F  F + +  V+I + FFEG ++LKV
Sbjct: 494 EWSRIDELQVTWVKLHDCDIHELPEGLVCPKLEFFECFLKTHSAVKIPNTFFEGMKQLKV 553

Query: 178 LSLIGIHFSSLPSSLGRLINLQTLCLDWCQLEDVAAIGQLKKLEILNLADSNIEQLPLEI 237
           L    +   SLP S+  L NL+TLCLD C+L D+  I +LKKLEIL+L  S++EQLP EI
Sbjct: 554 LDFSRMQLPSLPLSIQCLANLRTLCLDGCKLGDIVIIAELKKLEILSLMSSDMEQLPREI 613

Query: 238 GQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNSFSGWEKVEGGSNASLVELKRL 297
            QLT LRLLDL++  +++VI   VIS L RLE+L M+NSF+ WE  EG SNA L ELK L
Sbjct: 614 AQLTHLRLLDLSDSSTIKVIPSGVISSLFRLEDLCMENSFTQWEG-EGKSNACLAELKHL 672

Query: 298 TKLTTLEIEVRDAEILLPDFVSVELQRYRIRIGDKLEYEIDQLLVKSEALRLMMLKGLEK 357
           + LT L+I++ DA++L  D V   L RYRI +GD   +E  ++   +  L+L        
Sbjct: 673 SHLTFLDIQIPDAKLLPKDIVFENLVRYRILVGDVWSWE--EIFEANSTLKLNKFD---- 726

Query: 358 VSILQENDGTKMLLQRTEDLWLVKLEGVQNVVHELDDGEGFPRLKHLHVESCYEIVHIVG 417
            + L   DG   LL+RTEDL L +L G  NV+ +L+  EGF +LKHL+VES  EI +IV 
Sbjct: 727 -TSLHLVDGISKLLKRTEDLHLRELCGGTNVLSKLNR-EGFLKLKHLNVESSPEIQYIVN 784

Query: 418 SV 419
           S+
Sbjct: 785 SM 786

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147865073|emb|CAN83232.1| hypothetical protein VITISV_021876 [Vitis vinifera]

 Score =  308 bits (789), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 195/423 (46%), Positives = 273/423 (64%), Gaps = 17/423 (4%)

Query: 1   MEKNVYLSIKLSYDFLRSEEAKSMFRLCGLYSEGHAIPVPYLLRYGVGWGLFENVYTLEE 60
           ME  VY S+KLSY+ L  +E KS+F LCGL+S  + I +  LL+YG+G  LF+   TLEE
Sbjct: 378 METKVYSSLKLSYEHLEGDEVKSLFLLCGLFS--NYIYIRDLLKYGMGLRLFQGTNTLEE 435

Query: 61  ARSRVHRLIDNLKSSCLLLDGDAEDEVKMHDIIHVVAVSVAAETRMFNIPNVADLEKKME 120
           A++R+  L+DNLKSS LLL+      V+MHD++  VA+ ++++    ++  +     ++E
Sbjct: 436 AKNRIDTLVDNLKSSNLLLETGHNAVVRMHDVVRSVALDISSKDH--HVFTLQQTTGRVE 493

Query: 121 ETIRKDP----IAISLPQRNIQELPERLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELK 176
           +  R D     I ++  + +I ELPE L CP L+LF+   +    V+I + FFEG ++L+
Sbjct: 494 KWPRIDELQKVIWVNQDECDIHELPEGLVCPKLKLFICCLKTNSAVKIPNTFFEGMKQLQ 553

Query: 177 VLSLIGIHFSSLPSSLGRLINLQTLCLDWCQLEDVAAIGQLKKLEILNLADSNIEQLPLE 236
           VL    +H  SLPSSL  L NLQTL L  C+L D+  I +LKKLEIL+L DS+IEQLP E
Sbjct: 554 VLDFTQMHLPSLPSSLQCLANLQTLLLYGCKLGDIGIITELKKLEILSLIDSDIEQLPRE 613

Query: 237 IGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNSFSGWEKVEGGSNASLVELKR 296
           I QLT LRLLDL++  +++VI   VIS LS+LE+L M+NSF+ WE  EG SNA L ELK 
Sbjct: 614 IAQLTHLRLLDLSDSSTIKVIPSGVISSLSQLEDLCMENSFTQWEG-EGKSNACLAELKH 672

Query: 297 LTKLTTLEIEVRDAEILLPDFVSVELQRYRIRIGDKLEYEIDQLLVKSEALRLMMLKGLE 356
           L+ LT+L+I++ DA++L  D V   L RYRI +GD   +E +      +  R + LK  +
Sbjct: 673 LSHLTSLDIQIPDAKLLPKDVVFENLVRYRIFVGDVWIWEENY-----KTNRTLKLKKFD 727

Query: 357 KVSILQENDGTKMLLQRTEDLWLVKLEGVQNVVHELDDGEGFPRLKHLHVESCYEIVHIV 416
             + L   DG   LL+ TEDL L +L G  NV+ +L DGEGF +LKHL+VES  EI +IV
Sbjct: 728 --TSLHLVDGISKLLKITEDLHLRELCGGTNVLSKL-DGEGFFKLKHLNVESSPEIQYIV 784

Query: 417 GSV 419
            S+
Sbjct: 785 NSL 787

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296087872|emb|CBI35155.3| unnamed protein product [Vitis vinifera]

 Score =  306 bits (783), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 192/421 (45%), Positives = 270/421 (64%), Gaps = 15/421 (3%)

Query: 1   MEKNVYLSIKLSYDFLRSEEAKSMFRLCGLYSEGHAIPVPYLLRYGVGWGLFENVYTLEE 60
           M+  VY +++LSY  L  +E KS+F LCGL S  + I +  LL+YG+G  LF+   TLEE
Sbjct: 201 MDAMVYSTLELSYKHLEGDEVKSLFLLCGLMS--NKIYIDDLLKYGMGLRLFQGTNTLEE 258

Query: 61  ARSRVHRLIDNLKSSCLLLDGDAEDEVKMHDIIHVVAVSVAAET-RMFNIPNVADLE-KK 118
           A++R+  L+D+LK+S LLLD      V+MHD++  VA+++ ++  R+F++     +E  K
Sbjct: 259 AKNRIDTLVDSLKASKLLLDTGHNSFVRMHDVVRDVAIAIVSKVHRVFSLREDELVEWPK 318

Query: 119 MEETIRKDPIAISLPQRNIQELPERLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVL 178
           M+E   +    +SL   +I ELP  L CP L+LFL +      ++I + FFE  ++LKVL
Sbjct: 319 MDEL--QTCTKMSLAYNDICELPIELVCPELELFLFYHTIDYHLKIPETFFEEMKKLKVL 376

Query: 179 SLIGIHFSSLPSSLGRLINLQTLCLDWCQLEDVAAIGQLKKLEILNLADSNIEQLPLEIG 238
            L  +HF+SLPSSL  L NL+TL L+WC+L D++ I +LKKLE  +   SNIE+LP EI 
Sbjct: 377 DLSNMHFTSLPSSLRCLTNLRTLSLNWCKLGDISIIVELKKLEFFSFMGSNIEKLPREIA 436

Query: 239 QLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNSFSGWEKVEGGSNASLVELKRLT 298
           QLT LRL DL +C  L+ I PNVIS LS+LE L M+NSF+ WE VEG SNAS+ E K L 
Sbjct: 437 QLTHLRLFDLRDCSKLREIPPNVISSLSKLENLCMENSFTLWE-VEGKSNASIAEFKYLP 495

Query: 299 KLTTLEIEVRDAEILLPDFVSVELQRYRIRIGDKLEYEIDQLLVKSEALRLMMLKGLEKV 358
            LTTL+I++ DAE+LL D +  +L RYRI IGD   +  D+    ++ L+L  L      
Sbjct: 496 YLTTLDIQIPDAELLLTDVLFEKLIRYRIFIGDVWSW--DKNCPTTKTLKLNKLD----- 548

Query: 359 SILQENDGTKMLLQRTEDLWLVKLEGVQNVVHELDDGEGFPRLKHLHVESCYEIVHIVGS 418
           + L+  DG  +LL+  +DL L +L G  NV  +LD  EGF +LK LHVE   E+ HI+ S
Sbjct: 549 TSLRLADGISLLLKGAKDLHLRELSGAANVFPKLDR-EGFLQLKCLHVERSPEMQHIMNS 607

Query: 419 V 419
           +
Sbjct: 608 M 608

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359488027|ref|XP_002269288.2| PREDICTED: disease resistance protein At4g27190-like [Vitis vinifera]

 Score =  305 bits (782), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 192/421 (45%), Positives = 270/421 (64%), Gaps = 15/421 (3%)

Query: 1   MEKNVYLSIKLSYDFLRSEEAKSMFRLCGLYSEGHAIPVPYLLRYGVGWGLFENVYTLEE 60
           M+  VY +++LSY  L  +E KS+F LCGL S  + I +  LL+YG+G  LF+   TLEE
Sbjct: 381 MDAMVYSTLELSYKHLEGDEVKSLFLLCGLMS--NKIYIDDLLKYGMGLRLFQGTNTLEE 438

Query: 61  ARSRVHRLIDNLKSSCLLLDGDAEDEVKMHDIIHVVAVSVAAET-RMFNIPNVADLE-KK 118
           A++R+  L+D+LK+S LLLD      V+MHD++  VA+++ ++  R+F++     +E  K
Sbjct: 439 AKNRIDTLVDSLKASKLLLDTGHNSFVRMHDVVRDVAIAIVSKVHRVFSLREDELVEWPK 498

Query: 119 MEETIRKDPIAISLPQRNIQELPERLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVL 178
           M+E   +    +SL   +I ELP  L CP L+LFL +      ++I + FFE  ++LKVL
Sbjct: 499 MDEL--QTCTKMSLAYNDICELPIELVCPELELFLFYHTIDYHLKIPETFFEEMKKLKVL 556

Query: 179 SLIGIHFSSLPSSLGRLINLQTLCLDWCQLEDVAAIGQLKKLEILNLADSNIEQLPLEIG 238
            L  +HF+SLPSSL  L NL+TL L+WC+L D++ I +LKKLE  +   SNIE+LP EI 
Sbjct: 557 DLSNMHFTSLPSSLRCLTNLRTLSLNWCKLGDISIIVELKKLEFFSFMGSNIEKLPREIA 616

Query: 239 QLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNSFSGWEKVEGGSNASLVELKRLT 298
           QLT LRL DL +C  L+ I PNVIS LS+LE L M+NSF+ WE VEG SNAS+ E K L 
Sbjct: 617 QLTHLRLFDLRDCSKLREIPPNVISSLSKLENLCMENSFTLWE-VEGKSNASIAEFKYLP 675

Query: 299 KLTTLEIEVRDAEILLPDFVSVELQRYRIRIGDKLEYEIDQLLVKSEALRLMMLKGLEKV 358
            LTTL+I++ DAE+LL D +  +L RYRI IGD   +  D+    ++ L+L  L      
Sbjct: 676 YLTTLDIQIPDAELLLTDVLFEKLIRYRIFIGDVWSW--DKNCPTTKTLKLNKLD----- 728

Query: 359 SILQENDGTKMLLQRTEDLWLVKLEGVQNVVHELDDGEGFPRLKHLHVESCYEIVHIVGS 418
           + L+  DG  +LL+  +DL L +L G  NV  +LD  EGF +LK LHVE   E+ HI+ S
Sbjct: 729 TSLRLADGISLLLKGAKDLHLRELSGAANVFPKLDR-EGFLQLKCLHVERSPEMQHIMNS 787

Query: 419 V 419
           +
Sbjct: 788 M 788

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	421
TAIR|locus:2131689	919	AT4G27220 [Arabidopsis thalian	0.657	0.301	0.313	9.8e-32
TAIR|locus:2136447	985	AT4G27190 [Arabidopsis thalian	0.928	0.396	0.283	1.5e-30
TAIR|locus:2005517	909	RPS2 "RESISTANT TO P. SYRINGAE	0.636	0.294	0.294	1.1e-21
TAIR|locus:2166320	888	AT5G63020 [Arabidopsis thalian	0.627	0.297	0.296	1e-16
TAIR|locus:2171579	843	AT5G47250 [Arabidopsis thalian	0.572	0.285	0.301	7.5e-16
TAIR|locus:2132741	892	AT4G10780 [Arabidopsis thalian	0.638	0.301	0.286	3.1e-15
TAIR|locus:2036214	851	AT1G15890 [Arabidopsis thalian	0.612	0.303	0.310	3e-14
TAIR|locus:2034770	894	SUMM2 "AT1G12280" [Arabidopsis	0.624	0.294	0.276	9.6e-14
TAIR|locus:2201986	885	RFL1 "AT1G12210" [Arabidopsis	0.631	0.300	0.285	1.5e-13
TAIR|locus:2201996	889	RPS5 "AT1G12220" [Arabidopsis	0.622	0.294	0.286	1.9e-13

TAIR|locus:2131689 AT4G27220 [Arabidopsis thaliana (taxid:3702)]

 Score = 341 (125.1 bits), Expect = 9.8e-32, Sum P(2) = 9.8e-32
 Identities = 89/284 (31%), Positives = 153/284 (53%)

Query:     2 EKNVYLSIKLSYDFLRSEEAKSMFRLCGLYSEGHAIPVPYLLRYGVGWGLFENVYTLEEA 61
             E+ ++ ++KLSYDFL+ +  KS F  C L+ E ++I V  L+ Y V  GL +  +  E+ 
Sbjct:   345 EEKIFGTLKLSYDFLQ-DNMKSCFLFCALFPEDYSIKVSELIMYWVAEGLLDGQHHYEDM 403

Query:    62 RSRVHRLIDNLKSSCLLLDGDAEDEVKMHDIIHVVAV-SVAAETRMFNIPNVAD--LEKK 118
              +    L++ LK SCLL DGD+ D VKMHD++   A+  ++++   F+   +A   L + 
Sbjct:   404 MNEGVTLVERLKDSCLLEDGDSCDTVKMHDVVRDFAIWFMSSQGEGFHSLVMAGRGLIEF 463

Query:   119 MEETIRKDPIAISLPQRNIQELPERLQCPNLQLFLLFRQGYGPV-QISDLFFEGTEELKV 177
              ++        +SL    ++ LP  +    ++  +L  QG   V ++ + F +    L++
Sbjct:   464 PQDKFVSSVQRVSLMANKLERLPNNV-IEGVETLVLLLQGNSHVKEVPNGFLQAFPNLRI 522

Query:   178 LSLIGIHFSSLPSSLGRLINLQTLCLDWCQ-LEDVAAIGQLKKLEILNLADSNIEQLPLE 236
             L L G+   +LP S   L +L++L L  C+ L ++ ++  L KL+ L+L +S I +LP  
Sbjct:   523 LDLSGVRIRTLPDSFSNLHSLRSLVLRNCKKLRNLPSLESLVKLQFLDLHESAIRELPRG 582

Query:   237 IGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNSFSGW 280
             +  L+ LR + ++N + LQ I    I +LS LE L M  S   W
Sbjct:   583 LEALSSLRYICVSNTYQLQSIPAGTILQLSSLEVLDMAGSAYSW 626

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2136447 AT4G27190 [Arabidopsis thaliana (taxid:3702)]

 Score = 348 (127.6 bits), Expect = 1.5e-30, P = 1.5e-30
 Identities = 120/424 (28%), Positives = 214/424 (50%)

Query:     1 MEKNVYLSIKLSYDFLRSEEAKSMFRLCGLYSEGHAIPVPYLLRYGVGWGLFENVYTLEE 60
             +E+ ++  +KLSYDFL  ++AK  F LC L+ E ++I V  ++RY +  G  E + + E+
Sbjct:   375 IEEKIFQPLKLSYDFLE-DKAKFCFLLCALFPEDYSIEVTEVVRYWMAEGFMEELGSQED 433

Query:    61 ARSRVHRLIDNLKSSCLLLDGDAEDEVKMHDIIHVVAVSVAAETRMFNIPNVADLEKKME 120
             + +     +++LK  CLL DGD  D VKMHD++   A+ + + ++  +   V  +     
Sbjct:   434 SMNEGITTVESLKDYCLLEDGDRRDTVKMHDVVRDFAIWIMSSSQDDSHSLV--MSGTGL 491

Query:   121 ETIRKDPIA-----ISLPQRNIQELPERLQ--CPNLQLFLLFRQG-YGPVQISDLFFEGT 172
             + IR+D +A     +SL    ++ LP+ ++  C    + LL  QG +   ++   F +  
Sbjct:   492 QDIRQDKLAPSLRRVSLMNNKLESLPDLVEEFCVKTSVLLL--QGNFLLKEVPIGFLQAF 549

Query:   173 EELKVLSLIGIHFSSLPS-SLGRLINLQTLCLDWC-QLEDVAAIGQLKKLEILNLADSNI 230
               L++L+L G    S PS SL RL +L +L L  C +L  + ++  L KLE+L+L  ++I
Sbjct:   550 PTLRILNLSGTRIKSFPSCSLLRLFSLHSLFLRDCFKLVKLPSLETLAKLELLDLCGTHI 609

Query:   231 EQLPLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNSFSGWEKVEGGSN-- 288
              + P  + +L   R LDL+    L+ I   V+S+LS LE L M +S   W  V+G +   
Sbjct:   610 LEFPRGLEELKRFRHLDLSRTLHLESIPARVVSRLSSLETLDMTSSHYRWS-VQGETQKG 668

Query:   289 -ASXXXXXXXXXXXXXXXXVRDAEILLPDFVS--VELQRYRIRIGDKLEYEIDQLLVKSE 345
              A+                +  +  LL    +    L+++++ +G +  Y    L  + +
Sbjct:   669 QATVEEIGCLQRLQVLSIRLHSSPFLLNKRNTWIKRLKKFQLVVGSR--YI---LRTRHD 723

Query:   346 ALRLMMLKGLEKVSILQENDGTKMLLQRTEDLWLVKLEGVQNVVHEL-DDGEGFPRLKHL 404
               RL     +  +++ Q + G   LL  T  L L   +G++ ++ +L  D +GF  LK L
Sbjct:   724 KRRLT----ISHLNVSQVSIG--WLLAYTTSLALNHCQGIEAMMKKLVSDNKGFKNLKSL 777

Query:   405 HVES 408
              +E+
Sbjct:   778 TIEN 781

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2005517 RPS2 "RESISTANT TO P. SYRINGAE 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 271 (100.5 bits), Expect = 1.1e-21, Sum P(2) = 1.1e-21
 Identities = 83/282 (29%), Positives = 142/282 (50%)

Query:     5 VYLSIKLSYDFLRSEEAKSMFRLCGLYSEGHAIPVPYLLRYGVGWGLFENVYTLEEARSR 64
             V+  +K SYD L S+  +S F  C L+ E H+I +  L+ Y VG G   + + +     +
Sbjct:   388 VFALLKFSYDNLESDLLRSCFLYCALFPEEHSIEIEQLVEYWVGEGFLTSSHGVNTIY-K 446

Query:    65 VHRLIDNLKSSCLLLDGDAEDEVKMHDIIHVVAVSVAAETRMFNI-----PNVADLEKKM 119
              + LI +LK++CLL  GD + +VKMH+++   A+ +A+E   +       P++   E   
Sbjct:   447 GYFLIGDLKAACLLETGDEKTQVKMHNVVRSFALWMASEQGTYKELILVEPSMGHTEAPK 506

Query:   120 EETIRKDPIAISLPQRNIQELPERLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLS 179
              E  R+  + ISL    IQ LPE+L CP L   +L +Q     +I   FF     L+VL 
Sbjct:   507 AENWRQ-ALVISLLDNRIQTLPEKLICPKLTTLML-QQNSSLKKIPTGFFMHMPVLRVLD 564

Query:   180 LIGIHFSSLPSSLGRLINLQTLCLDWCQLEDVAA-IGQLKKLEILNLADSN-IEQLPLE- 236
             L     + +P S+  L+ L  L +   ++  +   +G L+KL+ L+L  +  ++ +P + 
Sbjct:   565 LSFTSITEIPLSIKYLVELYHLSMSGTKISVLPQELGNLRKLKHLDLQRTQFLQTIPRDA 624

Query:   237 IGQLTGLRLLDLTNC---WSLQVIAPNVISKLSRLEELYMDN 275
             I  L+ L +L+L      W LQ    +   +L   +  Y++N
Sbjct:   625 ICWLSKLEVLNLYYSYAGWELQSFGEDEAEELGFADLEYLEN 666

GO:0000166 "nucleotide binding" evidence=IEA

GO:0006952 "defense response" evidence=ISS;TAS

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0009626 "plant-type hypersensitive response" evidence=IMP

GO:0016045 "detection of bacterium" evidence=RCA;IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005886 "plasma membrane" evidence=IDA

GO:0042742 "defense response to bacterium" evidence=RCA;IMP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031347 "regulation of defense response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

GO:0045087 "innate immune response" evidence=RCA

GO:0050776 "regulation of immune response" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

GO:0051707 "response to other organism" evidence=RCA

TAIR|locus:2166320 AT5G63020 [Arabidopsis thaliana (taxid:3702)]

 Score = 233 (87.1 bits), Expect = 1.0e-16, Sum P(2) = 1.0e-16
 Identities = 82/277 (29%), Positives = 137/277 (49%)

Query:     1 MEKNVYLSIKLSYDFLRSEEAKSMFRLCGLYSEGHAIPVPYLLRYGVGWGLFENVYTLEE 60
             ME  +   +K SYD L+SE+ K  F+ C L+ E H I    L+ Y +G G  +      +
Sbjct:   386 MEDEILPILKYSYDNLKSEQLKLCFQYCALFPEDHNIEKNDLVDYWIGEGFIDR--NKGK 443

Query:    61 ARSRVHRLIDNLKSSCLLLDGDAEDEVKMHDIIHVVAVSVAAE--TRMFNIPNVADLEKK 118
             A ++ + +I  L  SCLL++ + ++ VKMHD++  +A+ +A++   +  N    A L+ +
Sbjct:   444 AENQGYEIIGILVRSCLLME-ENQETVKMHDVVREMALWIASDFGKQKENFIVQAGLQSR 502

Query:   119 MEETIRKDPIA--ISLPQRNIQELPERLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELK 176
                 I K  +A  +SL   NI+ + +  + P L   LL +   G   IS  FF     L 
Sbjct:   503 NIPEIEKWKVARRVSLMFNNIESIRDAPESPQLITLLLRKNFLG--HISSSFFRLMPMLV 560

Query:   177 VLSL-IGIHFSSLPSSLGRLINLQTLCLDWCQLED-VAAIGQLKKLEILNLADSNIEQLP 234
             VL L +      LP+ +   ++LQ L L   ++    A + +L+KL  LNL  + + +  
Sbjct:   561 VLDLSMNRDLRHLPNEISECVSLQYLSLSRTRIRIWPAGLVELRKLLYLNLEYTRMVESI 620

Query:   235 LEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEEL 271
               I  LT L++L L      +   P V+++L  LE L
Sbjct:   621 CGISGLTSLKVLRLFVSGFPE--DPCVLNELQLLENL 655

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2171579 AT5G47250 [Arabidopsis thaliana (taxid:3702)]

 Score = 232 (86.7 bits), Expect = 7.5e-16, Sum P(2) = 7.5e-16
 Identities = 76/252 (30%), Positives = 126/252 (50%)

Query:     2 EKNVYLSIKLSYDFLRSEEAKSMFRLCGLYSEGHAIPVPYLLRYGVGWGLFENVYTLEEA 61
             EK ++  +KLSYD+L+++ AK  F  C L+ + + I    L+ Y +G G  +     E A
Sbjct:   386 EKGIFQVLKLSYDYLKTKNAKC-FLYCALFPKAYYIKQDELVEYWIGEGFIDEKDGRERA 444

Query:    62 RSRVHRLIDNLKSSCLLLDGDAEDEVKMHDIIHVVAVSVAAETR---MFNIPNVADLEKK 118
             + R + +IDNL  + LLL+ + +  V MHD+I  +A+ + +E R    + +   A L + 
Sbjct:   445 KDRGYEIIDNLVGAGLLLESNKK--VYMHDMIRDMALWIVSEFRDGERYVVKTDAGLSQL 502

Query:   119 MEETIRKDPIAISLPQRNIQELPERLQCPN-LQLFLLFRQGYGPVQISDLFFEGTEELKV 177
              + T       +SL    I+ +P+  + P+   L  LF Q    V I   FF     L V
Sbjct:   503 PDVTDWTTVTKMSLFNNEIKNIPDDPEFPDQTNLVTLFLQNNRLVDIVGKFFLVMSTLVV 562

Query:   178 LSLI-GIHFSSLPSSLGRLINLQTLCLDWCQLEDVA-AIGQLKKLEILNL-ADSNIEQLP 234
             L L      + LP  +  L++L+ L L    ++ +   +G L KL  LNL + SN+  + 
Sbjct:   563 LDLSWNFQITELPKGISALVSLRLLNLSGTSIKHLPEGLGVLSKLIHLNLESTSNLRSVG 622

Query:   235 LEIGQLTGLRLL 246
             L I +L  L++L
Sbjct:   623 L-ISELQKLQVL 633

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

TAIR|locus:2132741 AT4G10780 [Arabidopsis thaliana (taxid:3702)]

 Score = 223 (83.6 bits), Expect = 3.1e-15, P = 3.1e-15
 Identities = 82/286 (28%), Positives = 132/286 (46%)

Query:     1 MEKNVYLSIKLSYDFLRSEEAKSMFRLCGLYSEGHAIPVPYLLRYGVGWGLFENVYTLEE 60
             M+ ++ L +K SYD L  +  +S F+ C LY E ++I    L+ Y +  G  +     E 
Sbjct:   385 MDDHILLILKYSYDNLNDKHVRSCFQYCALYPEDYSIKKYRLIDYWICEGFIDGNIGKER 444

Query:    61 ARSRVHRLIDNLKSSCLLLD-GDAEDEVKMHDIIHVVAV----SVAAETRMFNIPNVADL 115
             A ++ + ++  L  +CLL + G  + EVKMHD++  +A+     +        +   + L
Sbjct:   445 AVNQGYEILGTLVRACLLSEEGKNKLEVKMHDVVREMALWTLSDLGKNKERCIVQAGSGL 504

Query:   116 EK--KMEE--TIRKDPIAISLPQRNIQELPERLQCPNLQLFLLFRQGYGPVQISDLFFEG 171
              K  K+E+   +R+    +SL    I+E+    +CP L    L ++    V IS  FF  
Sbjct:   505 RKVPKVEDWGAVRR----LSLMNNGIEEISGSPECPELTTLFL-QENKSLVHISGEFFRH 559

Query:   172 TEELKVLSLIGIH-FSSLPSSLGRLINLQTLCLDWCQLEDV-AAIGQLKKLEILNLADSN 229
               +L VL L   H    LP  +  L+ L+ L L    +E + A +  LK L  LNL    
Sbjct:   560 MRKLVVLDLSENHQLDGLPEQISELVALRYLDLSHTNIEGLPACLQDLKTLIHLNLECMR 619

Query:   230 IEQLPLEIGQLTGLRLLDLTNC-WSLQVIAPNVISKLSRLEELYMD 274
                    I +L+ LR L L N    L V++   +  L  LE L +D
Sbjct:   620 RLGSIAGISKLSSLRTLGLRNSNIMLDVMSVKELHLLEHLEILTID 665

GO:0000166 "nucleotide binding" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2036214 AT1G15890 [Arabidopsis thaliana (taxid:3702)]

 Score = 214 (80.4 bits), Expect = 3.0e-14, P = 3.0e-14
 Identities = 89/287 (31%), Positives = 136/287 (47%)

Query:     1 MEKNVYLSIKLSYDFLRSEEAKSMFRLCGLYSEGHAIPVPYLLRYGVGWGLFENVYTLEE 60
             ME+ +   +K SYD L+ E+ K  F  C L+ E + +    L+ Y +  G  +     + 
Sbjct:   385 MEEKILPVLKFSYDDLKDEKVKLCFLYCSLFPEDYEVRKEELIEYWMCEGFIDGNEDEDG 444

Query:    61 ARSRVHRLIDNLKSSCLLLDGDAEDEVKMHDIIHVVAVSVAA------ETRMFNIPNV-- 112
             A ++ H +I +L  + LL+DG+   +VKMHD+I  +A+ +A+      ET     P V  
Sbjct:   445 ANNKGHDIIGSLVRAHLLMDGELTTKVKMHDVIREMALWIASNFGKQKETLCVK-PGVQL 503

Query:   113 ADLEKKME-ETIRKDPIAISLPQRNIQELPERLQCPNLQLFLLFRQGYGPVQISDLFFEG 171
               + K +  E++R+    +SL    I  +      PNL   LL  Q    V IS  FF  
Sbjct:   504 CHIPKDINWESLRR----MSLMCNQIANISSSSNSPNLSTLLL--QNNKLVHISCDFFRF 557

Query:   172 TEELKVLSLI-GIHFSSLP---SSLGRL--INLQTLCLDWCQLEDVAAIGQLKKLEILNL 225
                L VL L      SSLP   S LG L  INL T  + W  +    +  +LKKL  LNL
Sbjct:   558 MPALVVLDLSRNSSLSSLPEAISKLGSLQYINLSTTGIKWLPV----SFKELKKLIHLNL 613

Query:   226 ADSNIEQLPLEIGQLTGLRLLDLTNCWSLQV-IAPNVISKLSRLEEL 271
               +  ++L   +G  T L  L +   +S +V I  +++ +L  LE L
Sbjct:   614 EFT--DELESIVGIATSLPNLQVLKLFSSRVCIDGSLMEELLLLEHL 658

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2034770 SUMM2 "AT1G12280" [Arabidopsis thaliana (taxid:3702)]

 Score = 212 (79.7 bits), Expect = 9.6e-14, Sum P(2) = 9.6e-14
 Identities = 76/275 (27%), Positives = 132/275 (48%)

Query:     9 IKLSYDFLRSEEAKSMFRLCGLYSEGHAIPVPYLLRYGVGWGLFENVYTLEEARSRVHRL 68
             +K SYD L  E+ K  F  C L+ E + +    L+ Y +  G  +   + E A S+ + +
Sbjct:   395 LKYSYDNLNKEQVKPCFLYCSLFPEDYRMEKERLIDYWICEGFIDENESRERALSQGYEI 454

Query:    69 IDNLKSSCLLLDGDA-EDEVKMHDIIHVVAVSVAAETRMFNIPNVADLEKKMEETIR-KD 126
             I  L  +CLLL+    +++VKMHD++  +A+ +A++        +  +   + E  + K+
Sbjct:   455 IGILVRACLLLEEAINKEQVKMHDVVREMALWIASDLGEHKERCIVQVGVGLREVPKVKN 514

Query:   127 PIAI---SLPQRNIQELPERLQCPNLQLFLLFRQGYGPV-QISDLFFEGTEELKVLSLIG 182
               ++   SL +  I+ L    +C  L+L  LF Q    +  ISD FF     L VL L G
Sbjct:   515 WSSVRRMSLMENEIEILSGSPEC--LELTTLFLQKNDSLLHISDEFFRCIPMLVVLDLSG 572

Query:   183 -IHFSSLPSSLGRLINLQTLCLDWCQLEDV-AAIGQLKKLEILNLADSNIEQLPLEIGQL 240
                   LP+ + +L++L+ L L W  ++ +   + +LKKL  L L      +    I  +
Sbjct:   573 NSSLRKLPNQISKLVSLRYLDLSWTYIKRLPVGLQELKKLRYLRLDYMKRLKSISGISNI 632

Query:   241 TGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDN 275
             + LR L L    S   +  +++ +L  LE L + N
Sbjct:   633 SSLRKLQLLQ--SKMSLDMSLVEELQLLEHLEVLN 665

GO:0006952 "defense response" evidence=IGI;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2201986 RFL1 "AT1G12210" [Arabidopsis thaliana (taxid:3702)]

 Score = 208 (78.3 bits), Expect = 1.5e-13, P = 1.5e-13
 Identities = 80/280 (28%), Positives = 130/280 (46%)

Query:     1 MEKNVYLSIKLSYDFLRSEEAKSMFRLCGLYSEGHAIPVPYLLRYGVGWGLFENVYTLEE 60
             ME  +   +K SYD L  E+AKS F  C L+ E   I    L+ Y +  G  +     E+
Sbjct:   387 MEDEILPILKYSYDSLNGEDAKSCFLYCSLFPEDFEIRKEMLIEYWICEGFIKEKQGREK 446

Query:    61 ARSRVHRLIDNLKSSCLLLDGDAE-DEVKMHDIIHVVAVSVAAETRMFNIPNVAD----L 115
             A ++ + ++  L  S LLL+G  + D V MHD++  +A+ + ++        +      L
Sbjct:   447 AFNQGYDILGTLVRSSLLLEGAKDKDVVSMHDMVREMALWIFSDLGKHKERCIVQAGIGL 506

Query:   116 EKKMEETIRKDPIAISLPQRNIQELPERLQCPNLQLFLLFRQG-YGPVQISDLFFEGTEE 174
             ++  E    +    +SL   N +++    +C  ++L  LF Q  Y  V IS  FF     
Sbjct:   507 DELPEVENWRAVKRMSLMNNNFEKILGSPEC--VELITLFLQNNYKLVDISMEFFRCMPS 564

Query:   175 LKVLSLIGIH-FSSLPSSLGRLINLQTLCLDWCQLEDVA-AIGQLKKLEILNLADSN-IE 231
             L VL L   H  S LP  +  L++LQ L L    +E +   + +L+KL  L L  +  +E
Sbjct:   565 LAVLDLSENHSLSELPEEISELVSLQYLDLSGTYIERLPHGLHELRKLVHLKLERTRRLE 624

Query:   232 QLPLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEEL 271
              +   I  L+ LR L L +  S   +   ++ +L  LE L
Sbjct:   625 SIS-GISYLSSLRTLRLRD--SKTTLDTGLMKELQLLEHL 661

GO:0005575 "cellular_component" evidence=ND

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0009617 "response to bacterium" evidence=ISS

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

TAIR|locus:2201996 RPS5 "AT1G12220" [Arabidopsis thaliana (taxid:3702)]

 Score = 193 (73.0 bits), Expect = 1.9e-13, Sum P(2) = 1.9e-13
 Identities = 81/283 (28%), Positives = 131/283 (46%)

Query:     1 MEKNVYLSIKLSYDFLRSEEAKSMFRLCGLYSEGHAIPVPYLLRYGVGWGLFENVYTLEE 60
             ME  +   +K SYD L  E  KS F  C L+ E + I    L+ Y +  G        E 
Sbjct:   388 MEDEILHVLKYSYDNLNGELMKSCFLYCSLFPEDYLIDKEGLVDYWISEGFINEKEGRER 447

Query:    61 ARSRVHRLIDNLKSSCLLLDGDA-EDEVKMHDIIHVVAVSVAAET-----RMFNIPNVAD 114
               ++ + +I  L  +CLLL+ +  +  VKMHD++  +A+ ++++      +      V  
Sbjct:   448 NINQGYEIIGTLVRACLLLEEERNKSNVKMHDVVREMALWISSDLGKQKEKCIVRAGVGL 507

Query:   115 LE-KKMEE--TIRKDPIAISLPQRNIQELPERLQCPNLQLFLLFRQGYGPVQISDLFFEG 171
              E  K+++  T+RK    ISL    I+E+ +  +C  L    LF Q    V+IS  FF  
Sbjct:   508 REVPKVKDWNTVRK----ISLMNNEIEEIFDSHECAALTT--LFLQKNDVVKISAEFFRC 561

Query:   172 TEELKVLSLI-GIHFSSLPSSLGRLINLQTLCLDWCQLEDV-AAIGQLKKLEILNLAD-S 228
                L VL L      + LP  +  L +L+   L +  +  +   +  LKKL  LNL   S
Sbjct:   562 MPHLVVLDLSENQSLNELPEEISELASLRYFNLSYTCIHQLPVGLWTLKKLIHLNLEHMS 621

Query:   229 NIEQLPLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEEL 271
             ++  + L I  L  LR L L +  S  ++  +++ +L  LE L
Sbjct:   622 SLGSI-LGISNLWNLRTLGLRD--SRLLLDMSLVKELQLLEHL 661

GO:0009626 "plant-type hypersensitive response" evidence=IMP

GO:0006952 "defense response" evidence=IMP;TAS

GO:0009816 "defense response to bacterium, incompatible interaction" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0008219 "cell death" evidence=IMP

GO:0038023 "signaling receptor activity" evidence=IMP

GO:0000166 "nucleotide binding" evidence=IMP

GO:0005622 "intracellular" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	421
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	7e-09
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	2e-05
pfam12799	43	pfam12799, LRR_4, Leucine Rich repeats (2 copies)	9e-05
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-04
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-04
PLN03210	1153	PLN03210, PLN03210, Resistant to P	0.002

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 56.9 bits (137), Expect = 7e-09
 Identities = 38/114 (33%), Positives = 52/114 (45%), Gaps = 3/114 (2%)

Query: 163 QISDLFFEGTEELKVLSLIGIHFSSLPSSLGRLINLQTLCLDWCQLEDVAA-IGQLKKLE 221
            I  L       LK L L      SLPS L  L NL+ L L +  L D+   +  L  L 
Sbjct: 130 DIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLN 189

Query: 222 ILNLADSNIEQLPLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDN 275
            L+L+ + I  LP EI  L+ L  LDL+N  +  +   + +S L  L  L + N
Sbjct: 190 NLDLSGNKISDLPPEIELLSALEELDLSN--NSIIELLSSLSNLKNLSGLELSN 241

Length = 394

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 45.7 bits (108), Expect = 2e-05
 Identities = 46/150 (30%), Positives = 71/150 (47%), Gaps = 14/150 (9%)

Query: 131 SLPQRNIQELPERLQ-CPNLQ-LFLLFRQGYGPVQISDLFFEGTE--ELKVLSLIGIHFS 186
            L    I+ LP  L+  PNL+ L L F        +SDL    +    L  L L G   S
Sbjct: 146 DLSDNKIESLPSPLRNLPNLKNLDLSFND------LSDLPKLLSNLSNLNNLDLSGNKIS 199

Query: 187 SLPSSLGRLINLQTL-CLDWCQLEDVAAIGQLKKLEILNLADSNIEQLPLEIGQLTGLRL 245
            LP  +  L  L+ L   +   +E ++++  LK L  L L+++ +E LP  IG L+ L  
Sbjct: 200 DLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLET 259

Query: 246 LDLTNCWSLQVIAPNVISKLSRLEELYMDN 275
           LDL+N    Q+ + + +  L+ L EL +  
Sbjct: 260 LDLSNN---QISSISSLGSLTNLRELDLSG 286

Length = 394

>gnl|CDD|205079 pfam12799, LRR_4, Leucine Rich repeats (2 copies)

 Score = 39.4 bits (93), Expect = 9e-05
 Identities = 14/38 (36%), Positives = 21/38 (55%)

Query: 197 NLQTLCLDWCQLEDVAAIGQLKKLEILNLADSNIEQLP 234
           NL+TL L   Q+ D+  +  L  LE L+L+ + I  L 
Sbjct: 2   NLETLDLSNNQITDLPPLSNLPNLETLDLSGNKITDLS 39

Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains. Length = 43

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 44.1 bits (104), Expect = 1e-04
 Identities = 39/111 (35%), Positives = 60/111 (54%), Gaps = 8/111 (7%)

Query: 175 LKVLSLIG-IHFSSLPSSLGRLINLQTLCLDWCQL--EDVAAIGQLKKLEILNLADSNIE 231
           LKVL L G +    +P+SL  L +L+ L L   QL  +    +GQ+K L+ + L  +N+ 
Sbjct: 166 LKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLS 225

Query: 232 -QLPLEIGQLTGLRLLDLT-NCWSLQVIAPNVISKLSRLEELYM-DNSFSG 279
            ++P EIG LT L  LDL  N  +  +  P+ +  L  L+ L++  N  SG
Sbjct: 226 GEIPYEIGGLTSLNHLDLVYNNLTGPI--PSSLGNLKNLQYLFLYQNKLSG 274

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 42.9 bits (101), Expect = 3e-04
 Identities = 22/68 (32%), Positives = 38/68 (55%), Gaps = 3/68 (4%)

Query: 214 IGQLKKLEILNLADSNIE-QLPLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELY 272
           I +L+ L+ +NL+ ++I   +P  +G +T L +LDL+   S     P  + +L+ L  L 
Sbjct: 438 ISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYN-SFNGSIPESLGQLTSLRILN 496

Query: 273 M-DNSFSG 279
           +  NS SG
Sbjct: 497 LNGNSLSG 504

Length = 623

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 40.6 bits (95), Expect = 0.002
 Identities = 47/172 (27%), Positives = 75/172 (43%), Gaps = 41/172 (23%)

Query: 132 LPQRNIQELPERLQCPNLQLFLLFR----QGYGPVQISDLFFEGTEELKVL--SLIGIHF 185
           L +  I+E P  L+  NL   +L      + +  VQ        T  + +L  SL  +  
Sbjct: 732 LDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPL------TPLMTMLSPSLTRLFL 785

Query: 186 SS------LPSSLGRLINLQTLCLDWC-QLE--------------DVAAIGQLK------ 218
           S       LPSS+  L  L+ L ++ C  LE              D++   +L+      
Sbjct: 786 SDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDIS 845

Query: 219 -KLEILNLADSNIEQLPLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLE 269
             +  LNL+ + IE++P  I + + L  LD+  C +LQ ++ N ISKL  LE
Sbjct: 846 TNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLN-ISKLKHLE 896

syringae 6; Provisional. Length = 1153

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	421
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	100.0
PLN03210	1153	Resistant to P. syringae 6; Provisional	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.92
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.92
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.88
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.86
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.84
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.84
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.83
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.79
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.78
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.71
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.67
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.66
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.62
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.61
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.59
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.52
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.51
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.51
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.49
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.37
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.37
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.28
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.15
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.12
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.12
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.12
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.1
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.08
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.05
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.91
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.9
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.87
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.81
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.78
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.77
PLN03150	623	hypothetical protein; Provisional	98.66
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.62
KOG4341	483	consensus F-box protein containing LRR [General fu	98.61
PLN03150	623	hypothetical protein; Provisional	98.61
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.54
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.52
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.48
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.48
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.41
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.4
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.36
KOG4341	483	consensus F-box protein containing LRR [General fu	98.24
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.18
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.13
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.11
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.04
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.02
PRK15386	426	type III secretion protein GogB; Provisional	97.99
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.97
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.88
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.69
PRK15386	426	type III secretion protein GogB; Provisional	97.67
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.57
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.45
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.45
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.23
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.16
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.93
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.91
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.65
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.54
KOG3864	221	consensus Uncharacterized conserved protein [Funct	96.08
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.06
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	95.87
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	95.77
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.69
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	94.83
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	94.28
KOG3864	221	consensus Uncharacterized conserved protein [Funct	93.33
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	91.95
smart00370	26	LRR Leucine-rich repeats, outliers.	91.95
KOG0473	326	consensus Leucine-rich repeat protein [Function un	89.49
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	88.87
smart00370	26	LRR Leucine-rich repeats, outliers.	88.87
KOG0473	326	consensus Leucine-rich repeat protein [Function un	86.26
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	85.56

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=100.00  E-value=9.8e-43  Score=351.24  Aligned_cols=373  Identities=26%  Similarity=0.335  Sum_probs=271.0

Q ss_pred             CchhhhhHHHhhhhccCchHHHHHHHHhccCCCCCccChHHHHHHHhhhccccccccHHHHHHHHHHHHHHHHhcccccc
Q 038338            1 MEKNVYLSIKLSYDFLRSEEAKSMFRLCGLYSEGHAIPVPYLLRYGVGWGLFENVYTLEEARSRVHRLIDNLKSSCLLLD   80 (421)
Q Consensus         1 ~~~~i~~~l~lSY~~L~~~~lk~cfl~~~~fp~~~~~~~~~li~~wia~g~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~   80 (421)
                      +++.|+++|++|||+||+ ++|.||+|||+|||||+|++++|+..|+||||+++....+.+++.+.+++.+|+.+++++.
T Consensus       393 ~~~~i~~iLklSyd~L~~-~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~  471 (889)
T KOG4658|consen  393 MEESILPILKLSYDNLPE-ELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIE  471 (889)
T ss_pred             hhhhhHHhhhccHhhhhH-HHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhh
Confidence            467899999999999995 6999999999999999999999999999999999866777899999999999999999987


Q ss_pred             cC---CCCceeccchHHHHHHHHhh-----cCCeEEecCCCCcccccccCccCCCeEEEcCCCCCccCCcccCCCCccEE
Q 038338           81 GD---AEDEVKMHDIIHVVAVSVAA-----ETRMFNIPNVADLEKKMEETIRKDPIAISLPQRNIQELPERLQCPNLQLF  152 (421)
Q Consensus        81 ~~---~~~~~~~hd~~~~l~~~~~~-----~e~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L  152 (421)
                      .+   ....|+|||++|+||.+++.     .++.+ +.++......+....+...|++++.++.+..++....+++|++|
T Consensus       472 ~~~~~~~~~~kmHDvvRe~al~ias~~~~~~e~~i-v~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~~~~~L~tL  550 (889)
T KOG4658|consen  472 ERDEGRKETVKMHDVVREMALWIASDFGKQEENQI-VSDGVGLSEIPQVKSWNSVRRMSLMNNKIEHIAGSSENPKLRTL  550 (889)
T ss_pred             cccccceeEEEeeHHHHHHHHHHhccccccccceE-EECCcCccccccccchhheeEEEEeccchhhccCCCCCCccceE
Confidence            64   45789999999999999999     56644 33333444456677788999999999999888888888999999


Q ss_pred             EeeecCCCCcccChHHhccCCCccEEEccCC-CCCCCChhhhcccCCcEEEcccccCCC-cccccCcCCCCEEEeeCCC-
Q 038338          153 LLFRQGYGPVQISDLFFEGTEELKVLSLIGI-HFSSLPSSLGRLINLQTLCLDWCQLED-VAAIGQLKKLEILNLADSN-  229 (421)
Q Consensus       153 ~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~-~~~~lp~~i~~l~~L~~L~l~~~~~~~-~~~~~~l~~L~~L~l~~~~-  229 (421)
                      -+.+|..-...++..+|..++.|++||+++| .+.++|.+|+.+.+||||+++++.+.. |.+++++..|.+|++..+. 
T Consensus       551 ll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~  630 (889)
T KOG4658|consen  551 LLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGR  630 (889)
T ss_pred             EEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccc
Confidence            9999861136778888899999999999987 456799999999999999999999999 9999999999999999884 


Q ss_pred             CcccchhhcCCCCCCEEeccCCcCC-cccchhhhcCCCCCcEEEcccCCCCCccccCCCCcChhhhcCCCCCC----EEE
Q 038338          230 IEQLPLEIGQLTGLRLLDLTNCWSL-QVIAPNVISKLSRLEELYMDNSFSGWEKVEGGSNASLVELKRLTKLT----TLE  304 (421)
Q Consensus       230 l~~lp~~~~~l~~L~~L~l~~~~~~-~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~----~L~  304 (421)
                      +..+|.....|++|++|.+...... +......+..+++|+.+.......          .....+..+..|.    .+.
T Consensus       631 l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~----------~~~e~l~~~~~L~~~~~~l~  700 (889)
T KOG4658|consen  631 LESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV----------LLLEDLLGMTRLRSLLQSLS  700 (889)
T ss_pred             cccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh----------HhHhhhhhhHHHHHHhHhhh
Confidence            4455555566999999998764311 111111134444555444422211          1123333444444    233


Q ss_pred             EEecCccccCCcc-cccCCceEEEEEcCCccchh----hhhhc-hhhhceeEEEcCCcccccccchhHHHHhhhcccEEE
Q 038338          305 IEVRDAEILLPDF-VSVELQRYRIRIGDKLEYEI----DQLLV-KSEALRLMMLKGLEKVSILQENDGTKMLLQRTEDLW  378 (421)
Q Consensus       305 l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~----~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~  378 (421)
                      +.++.....+..+ ...+|+.|.+..+.......    ..... .++++..+.+.+|.   ....+.|... .|+|+.|.
T Consensus       701 ~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~---~~r~l~~~~f-~~~L~~l~  776 (889)
T KOG4658|consen  701 IEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCH---MLRDLTWLLF-APHLTSLS  776 (889)
T ss_pred             hcccccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccc---cccccchhhc-cCcccEEE
Confidence            3333333333333 55888888887665543111    11111 14556666555543   2333444433 38888888


Q ss_pred             eccccCccccc
Q 038338          379 LVKLEGVQNVV  389 (421)
Q Consensus       379 l~~~~~~~~~~  389 (421)
                      +..|...+.+.
T Consensus       777 l~~~~~~e~~i  787 (889)
T KOG4658|consen  777 LVSCRLLEDII  787 (889)
T ss_pred             EecccccccCC
Confidence            88888776554

>PLN03210 Resistant to P

Probab=100.00  E-value=1.9e-32  Score=290.49  Aligned_cols=376  Identities=17%  Similarity=0.239  Sum_probs=277.6

Q ss_pred             chhhhhHHHhhhhccCchHHHHHHHHhccCCCCCccChHHHHHHHhhhccccccccHHHHHHHHHHHHHHHHhccccccc
Q 038338            2 EKNVYLSIKLSYDFLRSEEAKSMFRLCGLYSEGHAIPVPYLLRYGVGWGLFENVYTLEEARSRVHRLIDNLKSSCLLLDG   81 (421)
Q Consensus         2 ~~~i~~~l~lSY~~L~~~~lk~cfl~~~~fp~~~~~~~~~li~~wia~g~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~   81 (421)
                      +.+|.++|++||+.|+.++.|.||+|+|+||.+..+   +.+..|++.+.+..           ...++.|+++++++..
T Consensus       419 ~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~---~~v~~~l~~~~~~~-----------~~~l~~L~~ksLi~~~  484 (1153)
T PLN03210        419 DGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKV---NDIKLLLANSDLDV-----------NIGLKNLVDKSLIHVR  484 (1153)
T ss_pred             cHHHHHHHHHhhhccCccchhhhhheehhhcCCCCH---HHHHHHHHhcCCCc-----------hhChHHHHhcCCEEEc
Confidence            467999999999999864589999999999988654   34677887765542           1137789999999765


Q ss_pred             CCCCceeccchHHHHHHHHhhcCC-------eEEec--------CC---CCccc--------------ccccCccCCCeE
Q 038338           82 DAEDEVKMHDIIHVVAVSVAAETR-------MFNIP--------NV---ADLEK--------------KMEETIRKDPIA  129 (421)
Q Consensus        82 ~~~~~~~~hd~~~~l~~~~~~~e~-------~~~~~--------~~---~~~~~--------------~~~~~~~~~l~~  129 (421)
                      +  +.++|||++++||+++++.+.       +....        ..   .....              ...+..+.+++.
T Consensus       485 ~--~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~  562 (1153)
T PLN03210        485 E--DIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLLF  562 (1153)
T ss_pred             C--CeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHHhcCccccE
Confidence            3  469999999999999987651       11000        00   00000              012345667777


Q ss_pred             EEcCCCCC-------ccCCccc-CC-CCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCCChhhhcccCCcE
Q 038338          130 ISLPQRNI-------QELPERL-QC-PNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPSSLGRLINLQT  200 (421)
Q Consensus       130 l~l~~~~~-------~~l~~~~-~~-~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~  200 (421)
                      |.+..+..       ..+|... .+ ++|+.|.+.++..  ..+|..+  .+.+|+.|++.++.+..+|.++..+.+|++
T Consensus       563 L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l--~~lP~~f--~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~  638 (1153)
T PLN03210        563 LKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPL--RCMPSNF--RPENLVKLQMQGSKLEKLWDGVHSLTGLRN  638 (1153)
T ss_pred             EEEecccccccccceeecCcchhhcCcccEEEEecCCCC--CCCCCcC--CccCCcEEECcCccccccccccccCCCCCE
Confidence            77754432       1233322 33 4688888888763  6677664  478999999999999889988999999999


Q ss_pred             EEccccc-CCCcccccCcCCCCEEEeeCC-CCcccchhhcCCCCCCEEeccCCcCCcccchhhhcCCCCCcEEEcccCCC
Q 038338          201 LCLDWCQ-LEDVAAIGQLKKLEILNLADS-NIEQLPLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNSFS  278 (421)
Q Consensus       201 L~l~~~~-~~~~~~~~~l~~L~~L~l~~~-~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  278 (421)
                      |+++++. +...+.++.+++|++|++++| .+..+|..++++++|++|++++|..++.+|.. + ++++|+.|++++|..
T Consensus       639 L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~-i-~l~sL~~L~Lsgc~~  716 (1153)
T PLN03210        639 IDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTG-I-NLKSLYRLNLSGCSR  716 (1153)
T ss_pred             EECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCc-C-CCCCCCEEeCCCCCC
Confidence            9999876 444556889999999999998 57799999999999999999999999999875 3 789999999998753


Q ss_pred             CCccccCCCCcChhhhcCCCCCCEEEEEecCccccCCcccccCCceEEEEEcCC------ccchhhhhhchhhhceeEEE
Q 038338          279 GWEKVEGGSNASLVELKRLTKLTTLEIEVRDAEILLPDFVSVELQRYRIRIGDK------LEYEIDQLLVKSEALRLMML  352 (421)
Q Consensus       279 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~------~~~~~~~~~~~l~~L~~L~l  352 (421)
                      ....+           ...++|+.|+++++.+..+|..+.+++|+.|.+..+..      .....+.....+++|+.|++
T Consensus       717 L~~~p-----------~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~L  785 (1153)
T PLN03210        717 LKSFP-----------DISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFL  785 (1153)
T ss_pred             ccccc-----------cccCCcCeeecCCCccccccccccccccccccccccchhhccccccccchhhhhccccchheeC
Confidence            32221           12368899999999999999887778888888853221      01011112234578999999


Q ss_pred             cCCcccccccchhHHHHhhhcccEEEeccccCcccccccccccCCCCCccEEEEeecCceeeecc
Q 038338          353 KGLEKVSILQENDGTKMLLQRTEDLWLVKLEGVQNVVHELDDGEGFPRLKHLHVESCYEIVHIVG  417 (421)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~i~~c~~L~~l~~  417 (421)
                      ++|.  ....+|.+++++ ++|+.|++++|..++.+|...    ++++|+.|++++|.+++.+++
T Consensus       786 s~n~--~l~~lP~si~~L-~~L~~L~Ls~C~~L~~LP~~~----~L~sL~~L~Ls~c~~L~~~p~  843 (1153)
T PLN03210        786 SDIP--SLVELPSSIQNL-HKLEHLEIENCINLETLPTGI----NLESLESLDLSGCSRLRTFPD  843 (1153)
T ss_pred             CCCC--CccccChhhhCC-CCCCEEECCCCCCcCeeCCCC----CccccCEEECCCCCccccccc
Confidence            9987  455578888887 999999999999988888644    689999999999988887654

syringae 6; Provisional

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.92  E-value=9.2e-25  Score=231.50  Aligned_cols=269  Identities=20%  Similarity=0.197  Sum_probs=134.9

Q ss_pred             cCccCCCeEEEcCCCCC-ccCCccc--CCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCC-CChhhhccc
Q 038338          121 ETIRKDPIAISLPQRNI-QELPERL--QCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSS-LPSSLGRLI  196 (421)
Q Consensus       121 ~~~~~~l~~l~l~~~~~-~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-lp~~i~~l~  196 (421)
                      +..+++++.|++++|.+ +.+|...  .+++|+.|++++|.+ .+.+|.   ..+++|++|++++|.+.. +|..++.+.
T Consensus        89 ~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l-~~~~p~---~~l~~L~~L~Ls~n~~~~~~p~~~~~l~  164 (968)
T PLN00113         89 IFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNF-TGSIPR---GSIPNLETLDLSNNMLSGEIPNDIGSFS  164 (968)
T ss_pred             HhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCcc-ccccCc---cccCCCCEEECcCCcccccCChHHhcCC
Confidence            34455666666666655 3454332  556666666666554 344443   235556666666655542 555556666


Q ss_pred             CCcEEEcccccCCC--cccccCcCCCCEEEeeCCCCc-ccchhhcCCCCCCEEeccCCcCCcccchhhhcCCCCCcEEEc
Q 038338          197 NLQTLCLDWCQLED--VAAIGQLKKLEILNLADSNIE-QLPLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYM  273 (421)
Q Consensus       197 ~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~l~-~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l  273 (421)
                      +|++|++++|.+..  |..++++++|++|++++|.+. .+|..++++++|++|++++|...+.+|.. ++.+++|++|++
T Consensus       165 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L  243 (968)
T PLN00113        165 SLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYE-IGGLTSLNHLDL  243 (968)
T ss_pred             CCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChh-HhcCCCCCEEEC
Confidence            66666666655443  555566666666666665554 44555566666666666655444445544 455666666666


Q ss_pred             ccCCCCCccccCCCCcChhhhcCCCCCCEEEEEecCcc-ccCCcc-cccCCceEEEEEcCCccchhhhhhchhhhceeEE
Q 038338          274 DNSFSGWEKVEGGSNASLVELKRLTKLTTLEIEVRDAE-ILLPDF-VSVELQRYRIRIGDKLEYEIDQLLVKSEALRLMM  351 (421)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~  351 (421)
                      ++|.+....+        ..++++++|++|++++|.+. .+|..+ .+++|+.|+++.+ ......|..+..+++|+.|+
T Consensus       244 ~~n~l~~~~p--------~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n-~l~~~~p~~~~~l~~L~~L~  314 (968)
T PLN00113        244 VYNNLTGPIP--------SSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDN-SLSGEIPELVIQLQNLEILH  314 (968)
T ss_pred             cCceeccccC--------hhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCC-eeccCCChhHcCCCCCcEEE
Confidence            5555443322        34455555555555555442 333333 2345555555422 22223444444455555555


Q ss_pred             EcCCcccccccchhHHHHhhhcccEEEeccccCcccccccccccCCCCCccEEEEeec
Q 038338          352 LKGLEKVSILQENDGTKMLLQRTEDLWLVKLEGVQNVVHELDDGEGFPRLKHLHVESC  409 (421)
Q Consensus       352 l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~i~~c  409 (421)
                      +++|.+  ....|.++..+ ++|+.|++.+|.....+|..+.   .+++|+.|++++|
T Consensus       315 l~~n~~--~~~~~~~~~~l-~~L~~L~L~~n~l~~~~p~~l~---~~~~L~~L~Ls~n  366 (968)
T PLN00113        315 LFSNNF--TGKIPVALTSL-PRLQVLQLWSNKFSGEIPKNLG---KHNNLTVLDLSTN  366 (968)
T ss_pred             CCCCcc--CCcCChhHhcC-CCCCEEECcCCCCcCcCChHHh---CCCCCcEEECCCC
Confidence            555442  12233334443 4455555544444444443333   4444444444443

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.92  E-value=3.1e-24  Score=227.50  Aligned_cols=229  Identities=24%  Similarity=0.257  Sum_probs=113.4

Q ss_pred             ccCCCeEEEcCCCCC-ccCCcccCCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCC-CChhhhcccCCcE
Q 038338          123 IRKDPIAISLPQRNI-QELPERLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSS-LPSSLGRLINLQT  200 (421)
Q Consensus       123 ~~~~l~~l~l~~~~~-~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-lp~~i~~l~~L~~  200 (421)
                      .++++++|++++|.+ +.+|. ..+++|++|++++|.+ .+.+|..+ +.+++|++|++++|.+.. +|..++.+.+|++
T Consensus       116 ~l~~L~~L~Ls~n~l~~~~p~-~~l~~L~~L~Ls~n~~-~~~~p~~~-~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~  192 (968)
T PLN00113        116 TSSSLRYLNLSNNNFTGSIPR-GSIPNLETLDLSNNML-SGEIPNDI-GSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEF  192 (968)
T ss_pred             cCCCCCEEECcCCccccccCc-cccCCCCEEECcCCcc-cccCChHH-hcCCCCCEEECccCcccccCChhhhhCcCCCe
Confidence            455666666666655 23332 3455666666666654 34444443 555666666666655542 5555556666666


Q ss_pred             EEcccccCCC--cccccCcCCCCEEEeeCCCCc-ccchhhcCCCCCCEEeccCCcCCcccchhhhcCCCCCcEEEcccCC
Q 038338          201 LCLDWCQLED--VAAIGQLKKLEILNLADSNIE-QLPLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNSF  277 (421)
Q Consensus       201 L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~l~-~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~  277 (421)
                      |++++|.+..  |..++++++|++|++++|++. .+|..++++++|++|++++|...+.+|.. ++++++|++|++++|.
T Consensus       193 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~  271 (968)
T PLN00113        193 LTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSS-LGNLKNLQYLFLYQNK  271 (968)
T ss_pred             eeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChh-HhCCCCCCEEECcCCe
Confidence            6666555543  555555556666666555554 45555555555555555555444444443 4555555555555554


Q ss_pred             CCCccccC------------C----CCcChhhhcCCCCCCEEEEEecCcc-ccCCcc-cccCCceEEEEEcCCccchhhh
Q 038338          278 SGWEKVEG------------G----SNASLVELKRLTKLTTLEIEVRDAE-ILLPDF-VSVELQRYRIRIGDKLEYEIDQ  339 (421)
Q Consensus       278 ~~~~~~~~------------~----~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~-~~~~L~~L~l~~~~~~~~~~~~  339 (421)
                      +....+..            .    ....+..+.++++|+.|++.+|.+. .+|..+ .+++|+.|++..+ ......|.
T Consensus       272 l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~p~  350 (968)
T PLN00113        272 LSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSN-KFSGEIPK  350 (968)
T ss_pred             eeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCC-CCcCcCCh
Confidence            43222200            0    0011133444445555555444442 233322 2345555555422 22223444


Q ss_pred             hhchhhhceeEEEcCCc
Q 038338          340 LLVKSEALRLMMLKGLE  356 (421)
Q Consensus       340 ~~~~l~~L~~L~l~~~~  356 (421)
                      .++.+++|+.|++++|.
T Consensus       351 ~l~~~~~L~~L~Ls~n~  367 (968)
T PLN00113        351 NLGKHNNLTVLDLSTNN  367 (968)
T ss_pred             HHhCCCCCcEEECCCCe
Confidence            45555555555555544

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.88  E-value=3.2e-24  Score=199.49  Aligned_cols=279  Identities=19%  Similarity=0.203  Sum_probs=195.9

Q ss_pred             cccCccCCCeEEEcCCCCCccCCccc-CCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCCChhhhcccC
Q 038338          119 MEETIRKDPIAISLPQRNIQELPERL-QCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPSSLGRLIN  197 (421)
Q Consensus       119 ~~~~~~~~l~~l~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~  197 (421)
                      +.+-.+..++.+++++|.+..+|... ..+++-+|++++|.+  ..+|..+|-+++.|-+|||++|.+..+|+.+..+.+
T Consensus        97 ~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~I--etIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~  174 (1255)
T KOG0444|consen   97 TDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNI--ETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSM  174 (1255)
T ss_pred             chhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCcc--ccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhh
Confidence            35677889999999999999998766 889999999999995  889999999999999999999999999999999999


Q ss_pred             CcEEEcccccCCC--cccccCcCCCCEEEeeCCCC--cccchhhcCCCCCCEEeccCCcCCcccchhhhcCCCCCcEEEc
Q 038338          198 LQTLCLDWCQLED--VAAIGQLKKLEILNLADSNI--EQLPLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYM  273 (421)
Q Consensus       198 L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~l--~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l  273 (421)
                      |++|++++|.+..  ...+-.+++|+.|.+++++-  ..+|..+..+.+|+.++++.| .+..+|.. +-++++|+.|++
T Consensus       175 LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N-~Lp~vPec-ly~l~~LrrLNL  252 (1255)
T KOG0444|consen  175 LQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSEN-NLPIVPEC-LYKLRNLRRLNL  252 (1255)
T ss_pred             hhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhcccccc-CCCcchHH-Hhhhhhhheecc
Confidence            9999999998766  66777788888888888753  378888888888888888884 56667765 678888888888


Q ss_pred             ccCCCCCccccCCCCcChhhhcCCCCCCEEEEEecCccccCCcc-cccCCceEEEEEcCCccchhhhhhchhhhceeEEE
Q 038338          274 DNSFSGWEKVEGGSNASLVELKRLTKLTTLEIEVRDAEILLPDF-VSVELQRYRIRIGDKLEYEIDQLLVKSEALRLMML  352 (421)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l  352 (421)
                      ++|.++.....         .+.-.+|++|+++.|.+..+|..+ .++.|++|.+..+...-..+|+.++++.+|+.+..
T Consensus       253 S~N~iteL~~~---------~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~a  323 (1255)
T KOG0444|consen  253 SGNKITELNMT---------EGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHA  323 (1255)
T ss_pred             CcCceeeeecc---------HHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHh
Confidence            88877654321         222345556666666666666555 33555555554222222234555555555665555


Q ss_pred             cCCcccccccchhHHHHhhhcccEEEeccccCcccccccccccCCCCCccEEEEeecCceeeeccc
Q 038338          353 KGLEKVSILQENDGTKMLLQRTEDLWLVKLEGVQNVVHELDDGEGFPRLKHLHVESCYEIVHIVGS  418 (421)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~i~~c~~L~~l~~~  418 (421)
                      ++|.   ..-+|+++..+ ++|+.|.+..|.. -.+|..+.   -+|-|+.|++..+|+|..=+.+
T Consensus       324 anN~---LElVPEglcRC-~kL~kL~L~~NrL-iTLPeaIH---lL~~l~vLDlreNpnLVMPPKP  381 (1255)
T KOG0444|consen  324 ANNK---LELVPEGLCRC-VKLQKLKLDHNRL-ITLPEAIH---LLPDLKVLDLRENPNLVMPPKP  381 (1255)
T ss_pred             hccc---cccCchhhhhh-HHHHHhcccccce-eechhhhh---hcCCcceeeccCCcCccCCCCc
Confidence            5543   22245555554 5555555554443 23444333   4555566666665555544433

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.86  E-value=4.5e-24  Score=198.57  Aligned_cols=277  Identities=18%  Similarity=0.200  Sum_probs=168.7

Q ss_pred             ccCccCCCeEEEcCCCCCccCC-cccCCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCCChhhhcccCC
Q 038338          120 EETIRKDPIAISLPQRNIQELP-ERLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPSSLGRLINL  198 (421)
Q Consensus       120 ~~~~~~~l~~l~l~~~~~~~l~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L  198 (421)
                      ....+.+++||++.+|.+.++. +...+|.||++.+..|......+|.++| +++.|.+|||++|++.+.|..+..-+++
T Consensus        50 EL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF-~l~dLt~lDLShNqL~EvP~~LE~AKn~  128 (1255)
T KOG0444|consen   50 ELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIF-RLKDLTILDLSHNQLREVPTNLEYAKNS  128 (1255)
T ss_pred             HHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhc-ccccceeeecchhhhhhcchhhhhhcCc
Confidence            3444555555555555553333 2225555555555555442334455543 3555555555555555555555555555


Q ss_pred             cEEEcccccCCC-cc-cccCcCCCCEEEeeCCCCcccchhhcCCCCCCEEeccCCcC-----------------------
Q 038338          199 QTLCLDWCQLED-VA-AIGQLKKLEILNLADSNIEQLPLEIGQLTGLRLLDLTNCWS-----------------------  253 (421)
Q Consensus       199 ~~L~l~~~~~~~-~~-~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~-----------------------  253 (421)
                      -+|++++|.|.. |. -+.+++.|-.||+++|++..+|+.+..+..|++|.+++|..                       
T Consensus       129 iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~Tq  208 (1255)
T KOG0444|consen  129 IVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQ  208 (1255)
T ss_pred             EEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhccccc
Confidence            555555555555 32 23455555555555555555555555555555555555322                       


Q ss_pred             --CcccchhhhcCCCCCcEEEcccCCCCCccccCCCCcChhhhcCCCCCCEEEEEecCccccCCcccc-cCCceEEEEEc
Q 038338          254 --LQVIAPNVISKLSRLEELYMDNSFSGWEKVEGGSNASLVELKRLTKLTTLEIEVRDAEILLPDFVS-VELQRYRIRIG  330 (421)
Q Consensus       254 --~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~L~~L~l~~~  330 (421)
                        +..+|.. +..+.+|..++++.|.+..         +++.+-++.+|+.|++++|.++++...... .+|+.|+++ .
T Consensus       209 RTl~N~Pts-ld~l~NL~dvDlS~N~Lp~---------vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlS-r  277 (1255)
T KOG0444|consen  209 RTLDNIPTS-LDDLHNLRDVDLSENNLPI---------VPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLS-R  277 (1255)
T ss_pred             chhhcCCCc-hhhhhhhhhccccccCCCc---------chHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccc-c
Confidence              1223333 4444455555555544332         235566777777888887777766555433 777777776 3


Q ss_pred             CCccchhhhhhchhhhceeEEEcCCcccccccchhHHHHhhhcccEEEeccccCcccccccccccCCCCCccEEEEeecC
Q 038338          331 DKLEYEIDQLLVKSEALRLMMLKGLEKVSILQENDGTKMLLQRTEDLWLVKLEGVQNVVHELDDGEGFPRLKHLHVESCY  410 (421)
Q Consensus       331 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~i~~c~  410 (421)
                      +.+. .+|..+.++++|+.|.+.+|++ +...+|++|+.+ ..|+.+...+|. ++-+|..+.   .|++|+.|.++.+.
T Consensus       278 NQLt-~LP~avcKL~kL~kLy~n~NkL-~FeGiPSGIGKL-~~Levf~aanN~-LElVPEglc---RC~kL~kL~L~~Nr  350 (1255)
T KOG0444|consen  278 NQLT-VLPDAVCKLTKLTKLYANNNKL-TFEGIPSGIGKL-IQLEVFHAANNK-LELVPEGLC---RCVKLQKLKLDHNR  350 (1255)
T ss_pred             chhc-cchHHHhhhHHHHHHHhccCcc-cccCCccchhhh-hhhHHHHhhccc-cccCchhhh---hhHHHHHhcccccc
Confidence            3444 5688899999999999999985 566689999998 899999888765 577888888   99999999998774


Q ss_pred             ceeeec
Q 038338          411 EIVHIV  416 (421)
Q Consensus       411 ~L~~l~  416 (421)
                       |..++
T Consensus       351 -LiTLP  355 (1255)
T KOG0444|consen  351 -LITLP  355 (1255)
T ss_pred             -eeech
Confidence             55444

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.84  E-value=6.8e-22  Score=182.69  Aligned_cols=279  Identities=16%  Similarity=0.169  Sum_probs=129.8

Q ss_pred             CccCCCeEEEcCCCCCccCCccc-CCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCCCh-hhhcccCCc
Q 038338          122 TIRKDPIAISLPQRNIQELPERL-QCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPS-SLGRLINLQ  199 (421)
Q Consensus       122 ~~~~~l~~l~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L~  199 (421)
                      ..+++++.+.+..|.+..+|... ...+++.|++.+|.+  ..+...-.+.++.||.|||+.|.+..+|. ++..-.+++
T Consensus        99 ~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I--~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~  176 (873)
T KOG4194|consen   99 YNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLI--SSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIK  176 (873)
T ss_pred             hcCCcceeeeeccchhhhcccccccccceeEEeeecccc--ccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCce
Confidence            45556666666666655555555 334455555555553  33333333445555555555555554432 233344555


Q ss_pred             EEEcccccCCC--cccccCcCCCCEEEeeCCCCcccchh-hcCCCCCCEEeccCCcCCcc--------------------
Q 038338          200 TLCLDWCQLED--VAAIGQLKKLEILNLADSNIEQLPLE-IGQLTGLRLLDLTNCWSLQV--------------------  256 (421)
Q Consensus       200 ~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~~~~--------------------  256 (421)
                      +|++++|+|+.  ...|.++.+|-.|.+++|+++.+|.. |.++++|+.|++..| .+..                    
T Consensus       177 ~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN-~irive~ltFqgL~Sl~nlklqrN  255 (873)
T KOG4194|consen  177 KLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRN-RIRIVEGLTFQGLPSLQNLKLQRN  255 (873)
T ss_pred             EEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhcccc-ceeeehhhhhcCchhhhhhhhhhc
Confidence            55555555554  34455555555555555555555443 223555555555442 2222                    


Q ss_pred             ----cchhhhcCCCCCcEEEcccCCCCCccccCCCCcChhhhcCCCCCCEEEEEecCccccCCc--ccccCCceEEEEEc
Q 038338          257 ----IAPNVISKLSRLEELYMDNSFSGWEKVEGGSNASLVELKRLTKLTTLEIEVRDAEILLPD--FVSVELQRYRIRIG  330 (421)
Q Consensus       257 ----~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~  330 (421)
                          +..+.|-.+.++++|++..|.+.....        .++-+++.|+.|+++.|.+..+-..  -..++|+.|+++ .
T Consensus       256 ~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~--------g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs-~  326 (873)
T KOG4194|consen  256 DISKLDDGAFYGLEKMEHLNLETNRLQAVNE--------GWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLS-S  326 (873)
T ss_pred             CcccccCcceeeecccceeecccchhhhhhc--------ccccccchhhhhccchhhhheeecchhhhcccceeEecc-c
Confidence                122222233333344444433332222        3445556666666666665433222  233666666665 2


Q ss_pred             CCccchhhhhhchhhhceeEEEcCCcccccccchhHHHHhhhcccEEEeccccCcccccccccccCCCCCccEEEEeecC
Q 038338          331 DKLEYEIDQLLVKSEALRLMMLKGLEKVSILQENDGTKMLLQRTEDLWLVKLEGVQNVVHELDDGEGFPRLKHLHVESCY  410 (421)
Q Consensus       331 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~i~~c~  410 (421)
                      +.+...-+.++..+..|+.|.+++|.+...  -...+..+ ++|+.|++++|..--.+-..-..-.++++|++|.+.|+ 
T Consensus       327 N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l--~e~af~~l-ssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gN-  402 (873)
T KOG4194|consen  327 NRITRLDEGSFRVLSQLEELNLSHNSIDHL--AEGAFVGL-SSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGN-  402 (873)
T ss_pred             cccccCChhHHHHHHHhhhhcccccchHHH--HhhHHHHh-hhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCc-
Confidence            333323344555556666666666543211  11123333 56666666655543211110000124556666665555 


Q ss_pred             ceeeec
Q 038338          411 EIVHIV  416 (421)
Q Consensus       411 ~L~~l~  416 (421)
                      +|++|.
T Consensus       403 qlk~I~  408 (873)
T KOG4194|consen  403 QLKSIP  408 (873)
T ss_pred             eeeecc
Confidence            455544

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.84  E-value=6.2e-22  Score=182.95  Aligned_cols=270  Identities=19%  Similarity=0.193  Sum_probs=163.9

Q ss_pred             CCCeEEEcCCCCCccCCccc--CCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCCCh-hhhcccCCcEE
Q 038338          125 KDPIAISLPQRNIQELPERL--QCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPS-SLGRLINLQTL  201 (421)
Q Consensus       125 ~~l~~l~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L  201 (421)
                      +.+|.++++.|.+..++...  .-.+++.|++++|.+  +.+....|..+.+|.+|.|++|.++.+|. .+.++++|+.|
T Consensus       149 ~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~I--t~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~L  226 (873)
T KOG4194|consen  149 PALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRI--TTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESL  226 (873)
T ss_pred             hhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccc--cccccccccccchheeeecccCcccccCHHHhhhcchhhhh
Confidence            34444444444444443222  334556666666653  44444445666666666777776666654 34557777777


Q ss_pred             EcccccCCC--cccccCcCCCCEEEeeCCCCcccchh-hcCCCCCCEEeccCCcCCcccchhhhcCCCCCcEEEcccCCC
Q 038338          202 CLDWCQLED--VAAIGQLKKLEILNLADSNIEQLPLE-IGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNSFS  278 (421)
Q Consensus       202 ~l~~~~~~~--~~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  278 (421)
                      ++..|.++.  --.|..+++|+.|.+.+|++..+.++ |..|.++++|+++.| .+..+..+++-.+++|+.|++++|.+
T Consensus       227 dLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N-~l~~vn~g~lfgLt~L~~L~lS~NaI  305 (873)
T KOG4194|consen  227 DLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETN-RLQAVNEGWLFGLTSLEQLDLSYNAI  305 (873)
T ss_pred             hccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccc-hhhhhhcccccccchhhhhccchhhh
Confidence            777776655  35566666677777777777666555 556778888888774 55666666667788888888888877


Q ss_pred             CCccccCCCCcChhhhcCCCCCCEEEEEecCccccCCcc--cccCCceEEEEEcCCccchhhhhhchhhhceeEEEcCCc
Q 038338          279 GWEKVEGGSNASLVELKRLTKLTTLEIEVRDAEILLPDF--VSVELQRYRIRIGDKLEYEIDQLLVKSEALRLMMLKGLE  356 (421)
Q Consensus       279 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~  356 (421)
                      ..+..        ......++|+.|+++.|.+..+++.-  .+..|+.|.++. +..+......+..+.+|+.|++++|.
T Consensus       306 ~rih~--------d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~-Nsi~~l~e~af~~lssL~~LdLr~N~  376 (873)
T KOG4194|consen  306 QRIHI--------DSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSH-NSIDHLAEGAFVGLSSLHKLDLRSNE  376 (873)
T ss_pred             heeec--------chhhhcccceeEeccccccccCChhHHHHHHHhhhhcccc-cchHHHHhhHHHHhhhhhhhcCcCCe
Confidence            76655        45666677888888888777766553  447777777763 33332333446666777777777776


Q ss_pred             ccccccch-hHHHHhhhcccEEEeccccCcccccccccccCCCCCccEEEEeecC
Q 038338          357 KVSILQEN-DGTKMLLQRTEDLWLVKLEGVQNVVHELDDGEGFPRLKHLHVESCY  410 (421)
Q Consensus       357 ~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~i~~c~  410 (421)
                      +...+..- ..+..+ ++|+.|.+.+|.. +.++...  ..+|++|+.|++.+++
T Consensus       377 ls~~IEDaa~~f~gl-~~LrkL~l~gNql-k~I~krA--fsgl~~LE~LdL~~Na  427 (873)
T KOG4194|consen  377 LSWCIEDAAVAFNGL-PSLRKLRLTGNQL-KSIPKRA--FSGLEALEHLDLGDNA  427 (873)
T ss_pred             EEEEEecchhhhccc-hhhhheeecCcee-eecchhh--hccCcccceecCCCCc
Confidence            43222221 123333 7777777776653 4444211  2367777777776664

>PLN03210 Resistant to P

Probab=99.83  E-value=7e-20  Score=195.08  Aligned_cols=273  Identities=19%  Similarity=0.193  Sum_probs=194.1

Q ss_pred             cCCCeEEEcCCCCCccCCcccCCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCC-CCCCChhhhcccCCcEEE
Q 038338          124 RKDPIAISLPQRNIQELPERLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIH-FSSLPSSLGRLINLQTLC  202 (421)
Q Consensus       124 ~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~lp~~i~~l~~L~~L~  202 (421)
                      ..+++.|.+.++.+..+|......+|+.|++.++..  ..++..+ ..+++|++|+++++. +..+|. ++.+++|++|+
T Consensus       588 p~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l--~~L~~~~-~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~  663 (1153)
T PLN03210        588 PPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKL--EKLWDGV-HSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLK  663 (1153)
T ss_pred             CcccEEEEecCCCCCCCCCcCCccCCcEEECcCccc--ccccccc-ccCCCCCEEECCCCCCcCcCCc-cccCCcccEEE
Confidence            356888999888888888877888999999988875  5565554 678889999998774 455664 77888899999


Q ss_pred             ccccc-CCC-cccccCcCCCCEEEeeCC-CCcccchhhcCCCCCCEEeccCCcCCcccchhhhcCCCCCcEEEcccCCCC
Q 038338          203 LDWCQ-LED-VAAIGQLKKLEILNLADS-NIEQLPLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNSFSG  279 (421)
Q Consensus       203 l~~~~-~~~-~~~~~~l~~L~~L~l~~~-~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  279 (421)
                      +++|. +.. |..++++++|+.|++++| .+..+|..+ ++++|++|++++|..+..+|.    ...+|++|++++|.+.
T Consensus       664 L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~----~~~nL~~L~L~~n~i~  738 (1153)
T PLN03210        664 LSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPD----ISTNISWLDLDETAIE  738 (1153)
T ss_pred             ecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCcccccc----ccCCcCeeecCCCccc
Confidence            98876 444 888888999999999887 677888765 788888888888876666553    1345566666555443


Q ss_pred             CccccC---------------------------------------------CCCcChhhhcCCCCCCEEEEEecC-cccc
Q 038338          280 WEKVEG---------------------------------------------GSNASLVELKRLTKLTTLEIEVRD-AEIL  313 (421)
Q Consensus       280 ~~~~~~---------------------------------------------~~~~~~~~l~~l~~L~~L~l~~~~-~~~~  313 (421)
                      ..+...                                             .....+.+++++++|+.|++++|. ++.+
T Consensus       739 ~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~L  818 (1153)
T PLN03210        739 EFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETL  818 (1153)
T ss_pred             cccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCee
Confidence            322110                                             011133455666667777776654 4566


Q ss_pred             CCcccccCCceEEEEEcCCccchhhhhhchhhhceeEEEcCCcccccccchhHHHHhhhcccEEEeccccCccccccccc
Q 038338          314 LPDFVSVELQRYRIRIGDKLEYEIDQLLVKSEALRLMMLKGLEKVSILQENDGTKMLLQRTEDLWLVKLEGVQNVVHELD  393 (421)
Q Consensus       314 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~  393 (421)
                      |....+++|+.|++++|.... .+|.   ..++|+.|++++|.+   ..+|.++..+ ++|++|++.+|+.++.++....
T Consensus       819 P~~~~L~sL~~L~Ls~c~~L~-~~p~---~~~nL~~L~Ls~n~i---~~iP~si~~l-~~L~~L~L~~C~~L~~l~~~~~  890 (1153)
T PLN03210        819 PTGINLESLESLDLSGCSRLR-TFPD---ISTNISDLNLSRTGI---EEVPWWIEKF-SNLSFLDMNGCNNLQRVSLNIS  890 (1153)
T ss_pred             CCCCCccccCEEECCCCCccc-cccc---cccccCEeECCCCCC---ccChHHHhcC-CCCCEEECCCCCCcCccCcccc
Confidence            665555667777766554433 1221   235677777777553   3467788887 9999999999999999887666


Q ss_pred             ccCCCCCccEEEEeecCceeeec
Q 038338          394 DGEGFPRLKHLHVESCYEIVHIV  416 (421)
Q Consensus       394 ~~~~~~~L~~L~i~~c~~L~~l~  416 (421)
                         .+++|+.+++.+|++|+.+.
T Consensus       891 ---~L~~L~~L~l~~C~~L~~~~  910 (1153)
T PLN03210        891 ---KLKHLETVDFSDCGALTEAS  910 (1153)
T ss_pred             ---cccCCCeeecCCCccccccc
Confidence               89999999999999998653

syringae 6; Provisional

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.79  E-value=1.2e-20  Score=167.31  Aligned_cols=278  Identities=18%  Similarity=0.196  Sum_probs=179.9

Q ss_pred             ccCccCCCeEEEcCCCCCccCCcccCCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCCChhhhcccCCc
Q 038338          120 EETIRKDPIAISLPQRNIQELPERLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPSSLGRLINLQ  199 (421)
Q Consensus       120 ~~~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~  199 (421)
                      ..+.+.++..|+++.|.+..+|++..|..|..|.+..|.+  ..+|....+++.+|.+||+.+|.+++.|..++.+.+|.
T Consensus       201 ~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i--~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~  278 (565)
T KOG0472|consen  201 ELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQI--EMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLE  278 (565)
T ss_pred             hhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHH--HhhHHHHhcccccceeeeccccccccCchHHHHhhhhh
Confidence            3445555555666666666666555666666666666653  55666666677777777777777777777777777777


Q ss_pred             EEEcccccCCC-cccccCcCCCCEEEeeCCCCcccchhh-----------------------------------------
Q 038338          200 TLCLDWCQLED-VAAIGQLKKLEILNLADSNIEQLPLEI-----------------------------------------  237 (421)
Q Consensus       200 ~L~l~~~~~~~-~~~~~~l~~L~~L~l~~~~l~~lp~~~-----------------------------------------  237 (421)
                      +||+++|.++. |.+++++ +|+.|.+.+|.++.+-.++                                         
T Consensus       279 rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~  357 (565)
T KOG0472|consen  279 RLDLSNNDISSLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPD  357 (565)
T ss_pred             hhcccCCccccCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccc
Confidence            77777777777 7777777 7777777776654322221                                         


Q ss_pred             -cCCCCCCEEeccCCcCCcccchhhhcCCC--CCcEEEcccCCCCCccccC---------------CCCcChhhhcCCCC
Q 038338          238 -GQLTGLRLLDLTNCWSLQVIAPNVISKLS--RLEELYMDNSFSGWEKVEG---------------GSNASLVELKRLTK  299 (421)
Q Consensus       238 -~~l~~L~~L~l~~~~~~~~~~~~~l~~l~--~L~~L~l~~~~~~~~~~~~---------------~~~~~~~~l~~l~~  299 (421)
                       ..+.+.+.|+++. ..+..+|.+.|..-+  -....+++.|.+...+...               ........+..+++
T Consensus       358 ~~~~i~tkiL~~s~-~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~k  436 (565)
T KOG0472|consen  358 IYAIITTKILDVSD-KQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQK  436 (565)
T ss_pred             hhhhhhhhhhcccc-cccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhc
Confidence             1122333444433 333444444332221  1333444444443333221               12233466777888


Q ss_pred             CCEEEEEecCccccCCcc-cccCCceEEEEEcCCccchhhhhhchhhhceeEEEcCCcccccccchhHHHHhhhcccEEE
Q 038338          300 LTTLEIEVRDAEILLPDF-VSVELQRYRIRIGDKLEYEIDQLLVKSEALRLMMLKGLEKVSILQENDGTKMLLQRTEDLW  378 (421)
Q Consensus       300 L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~  378 (421)
                      |..|++++|-+..+|..+ ....|+.++++.+ .+. ..|..+-.+..|+.+-.++|++.  .--+++++++ .+|.+|+
T Consensus       437 Lt~L~L~NN~Ln~LP~e~~~lv~Lq~LnlS~N-rFr-~lP~~~y~lq~lEtllas~nqi~--~vd~~~l~nm-~nL~tLD  511 (565)
T KOG0472|consen  437 LTFLDLSNNLLNDLPEEMGSLVRLQTLNLSFN-RFR-MLPECLYELQTLETLLASNNQIG--SVDPSGLKNM-RNLTTLD  511 (565)
T ss_pred             ceeeecccchhhhcchhhhhhhhhheeccccc-ccc-cchHHHhhHHHHHHHHhcccccc--ccChHHhhhh-hhcceec
Confidence            889999988888888887 4477999998744 343 56777777777888877777632  2235578888 9999999


Q ss_pred             eccccCcccccccccccCCCCCccEEEEeecC
Q 038338          379 LVKLEGVQNVVHELDDGEGFPRLKHLHVESCY  410 (421)
Q Consensus       379 l~~~~~~~~~~~~~~~~~~~~~L~~L~i~~c~  410 (421)
                      +.+|.. ..+|..++   ++.+|+.|++.|+|
T Consensus       512 L~nNdl-q~IPp~Lg---nmtnL~hLeL~gNp  539 (565)
T KOG0472|consen  512 LQNNDL-QQIPPILG---NMTNLRHLELDGNP  539 (565)
T ss_pred             cCCCch-hhCChhhc---cccceeEEEecCCc
Confidence            998775 66777777   99999999999997

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.78  E-value=1.7e-21  Score=172.58  Aligned_cols=264  Identities=23%  Similarity=0.261  Sum_probs=223.5

Q ss_pred             CCeEEEcCCCCCccCCcc-cCCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCCChhhhcccCCcEEEcc
Q 038338          126 DPIAISLPQRNIQELPER-LQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPSSLGRLINLQTLCLD  204 (421)
Q Consensus       126 ~l~~l~l~~~~~~~l~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~  204 (421)
                      .++.+.+++|.+..+... .++..+++|.+..|..  ..+|..+ +.+..++.++.+.+.+..+|..++.+..|+.++.+
T Consensus        46 ~l~~lils~N~l~~l~~dl~nL~~l~vl~~~~n~l--~~lp~ai-g~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s  122 (565)
T KOG0472|consen   46 DLQKLILSHNDLEVLREDLKNLACLTVLNVHDNKL--SQLPAAI-GELEALKSLNVSHNKLSELPEQIGSLISLVKLDCS  122 (565)
T ss_pred             chhhhhhccCchhhccHhhhcccceeEEEeccchh--hhCCHHH-HHHHHHHHhhcccchHhhccHHHhhhhhhhhhhcc
Confidence            567788888888666544 4899999999999985  7788876 78999999999999999999999999999999999


Q ss_pred             cccCCC-cccccCcCCCCEEEeeCCCCcccchhhcCCCCCCEEeccCCcCCcccchhhhcCCCCCcEEEcccCCCCCccc
Q 038338          205 WCQLED-VAAIGQLKKLEILNLADSNIEQLPLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNSFSGWEKV  283 (421)
Q Consensus       205 ~~~~~~-~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~  283 (421)
                      +|.+.. +++++.+..|..|+..+|++..+|.+++++.+|..+++.++ ....+|++.+ +++.|++|+...|.++..+ 
T Consensus       123 ~n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n-~l~~l~~~~i-~m~~L~~ld~~~N~L~tlP-  199 (565)
T KOG0472|consen  123 SNELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGN-KLKALPENHI-AMKRLKHLDCNSNLLETLP-  199 (565)
T ss_pred             ccceeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhcccc-chhhCCHHHH-HHHHHHhcccchhhhhcCC-
Confidence            999888 99999999999999999999999999999999999999995 5667777755 4999999999888877665 


Q ss_pred             cCCCCcChhhhcCCCCCCEEEEEecCccccCCcccccCCceEEEEEcCCccchhhhhhc-hhhhceeEEEcCCccccccc
Q 038338          284 EGGSNASLVELKRLTKLTTLEIEVRDAEILLPDFVSVELQRYRIRIGDKLEYEIDQLLV-KSEALRLMMLKGLEKVSILQ  362 (421)
Q Consensus       284 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~  362 (421)
                              .+++.+.+|..|++..|++..+|+..++..|.+|++. .+... .+|.... +++++..|++.+|++   ..
T Consensus       200 --------~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g-~N~i~-~lpae~~~~L~~l~vLDLRdNkl---ke  266 (565)
T KOG0472|consen  200 --------PELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVG-ENQIE-MLPAEHLKHLNSLLVLDLRDNKL---KE  266 (565)
T ss_pred             --------hhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhc-ccHHH-hhHHHHhcccccceeeecccccc---cc
Confidence                    5689999999999999999999977788999999985 33333 4555554 899999999999773   45


Q ss_pred             chhHHHHhhhcccEEEeccccCcccccccccccCCCCCccEEEEeecCceeee
Q 038338          363 ENDGTKMLLQRTEDLWLVKLEGVQNVVHELDDGEGFPRLKHLHVESCYEIVHI  415 (421)
Q Consensus       363 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~i~~c~~L~~l  415 (421)
                      .|+.+.-+ .+|++|++++|.. ..+|..++   ++ .|+.|.+.|+| |+.|
T Consensus       267 ~Pde~clL-rsL~rLDlSNN~i-s~Lp~sLg---nl-hL~~L~leGNP-lrTi  312 (565)
T KOG0472|consen  267 VPDEICLL-RSLERLDLSNNDI-SSLPYSLG---NL-HLKFLALEGNP-LRTI  312 (565)
T ss_pred             CchHHHHh-hhhhhhcccCCcc-ccCCcccc---cc-eeeehhhcCCc-hHHH
Confidence            78888877 8999999999875 66777777   88 99999999997 4443

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.71  E-value=1.1e-19  Score=143.07  Aligned_cols=167  Identities=25%  Similarity=0.371  Sum_probs=138.2

Q ss_pred             CccCCcccCCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCCChhhhcccCCcEEEcccccCCC-ccccc
Q 038338          137 IQELPERLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPSSLGRLINLQTLCLDWCQLED-VAAIG  215 (421)
Q Consensus       137 ~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~-~~~~~  215 (421)
                      +..++...++++++.|.+++|..  ..+|..+ ..+++|++|++.+|+++++|.+++.++.|+.|+++.|++.. |.+++
T Consensus        23 f~~~~gLf~~s~ITrLtLSHNKl--~~vppni-a~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfg   99 (264)
T KOG0617|consen   23 FEELPGLFNMSNITRLTLSHNKL--TVVPPNI-AELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFG   99 (264)
T ss_pred             HhhcccccchhhhhhhhcccCce--eecCCcH-HHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccC
Confidence            35566667888888888888875  5566665 67899999999999999999999999999999999888877 89999


Q ss_pred             CcCCCCEEEeeCCCCc--ccchhhcCCCCCCEEeccCCcCCcccchhhhcCCCCCcEEEcccCCCCCccccCCCCcChhh
Q 038338          216 QLKKLEILNLADSNIE--QLPLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNSFSGWEKVEGGSNASLVE  293 (421)
Q Consensus       216 ~l~~L~~L~l~~~~l~--~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~  293 (421)
                      .++.|+.||+.+|++.  .+|..+..++.|+.|++++| -...+|++ ++++++||.|.+..|.+...+         .+
T Consensus       100 s~p~levldltynnl~e~~lpgnff~m~tlralyl~dn-dfe~lp~d-vg~lt~lqil~lrdndll~lp---------ke  168 (264)
T KOG0617|consen  100 SFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDN-DFEILPPD-VGKLTNLQILSLRDNDLLSLP---------KE  168 (264)
T ss_pred             CCchhhhhhccccccccccCCcchhHHHHHHHHHhcCC-CcccCChh-hhhhcceeEEeeccCchhhCc---------HH
Confidence            9999999999998877  78888888899999999884 56778887 789999999998887655433         67


Q ss_pred             hcCCCCCCEEEEEecCccccCCcc
Q 038338          294 LKRLTKLTTLEIEVRDAEILLPDF  317 (421)
Q Consensus       294 l~~l~~L~~L~l~~~~~~~~~~~~  317 (421)
                      ++.++.|++|+|.+|.+..+|+.+
T Consensus       169 ig~lt~lrelhiqgnrl~vlppel  192 (264)
T KOG0617|consen  169 IGDLTRLRELHIQGNRLTVLPPEL  192 (264)
T ss_pred             HHHHHHHHHHhcccceeeecChhh
Confidence            888899999999999888888764

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.67  E-value=9e-19  Score=137.97  Aligned_cols=163  Identities=21%  Similarity=0.322  Sum_probs=147.4

Q ss_pred             cccccCccCCCeEEEcCCCCCccCCccc-CCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCCChhhhcc
Q 038338          117 KKMEETIRKDPIAISLPQRNIQELPERL-QCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPSSLGRL  195 (421)
Q Consensus       117 ~~~~~~~~~~l~~l~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l  195 (421)
                      ..+..-.++++++|.+++|.+..+|..+ .+.+|++|++++|.+  ..+|..+ +.+++||.|++..|.+..+|.+++.+
T Consensus        25 ~~~gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqi--e~lp~~i-ssl~klr~lnvgmnrl~~lprgfgs~  101 (264)
T KOG0617|consen   25 ELPGLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQI--EELPTSI-SSLPKLRILNVGMNRLNILPRGFGSF  101 (264)
T ss_pred             hcccccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchh--hhcChhh-hhchhhhheecchhhhhcCccccCCC
Confidence            3456667889999999999998887666 999999999999995  8889887 88999999999999999999999999


Q ss_pred             cCCcEEEcccccCCC---cccccCcCCCCEEEeeCCCCcccchhhcCCCCCCEEeccCCcCCcccchhhhcCCCCCcEEE
Q 038338          196 INLQTLCLDWCQLED---VAAIGQLKKLEILNLADSNIEQLPLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELY  272 (421)
Q Consensus       196 ~~L~~L~l~~~~~~~---~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~  272 (421)
                      +.|++||+.+|.+..   |..+.-++.|+.|+++.|.+..+|++++++++|+.|.+.+| .+-++|.+ ++.++.|++|.
T Consensus       102 p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdn-dll~lpke-ig~lt~lrelh  179 (264)
T KOG0617|consen  102 PALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDN-DLLSLPKE-IGDLTRLRELH  179 (264)
T ss_pred             chhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccC-chhhCcHH-HHHHHHHHHHh
Confidence            999999999999776   88999999999999999999999999999999999999995 55678988 89999999999


Q ss_pred             cccCCCCCcccc
Q 038338          273 MDNSFSGWEKVE  284 (421)
Q Consensus       273 l~~~~~~~~~~~  284 (421)
                      +.+|.++..+++
T Consensus       180 iqgnrl~vlppe  191 (264)
T KOG0617|consen  180 IQGNRLTVLPPE  191 (264)
T ss_pred             cccceeeecChh
Confidence            999998877663

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.66  E-value=5.5e-16  Score=155.54  Aligned_cols=247  Identities=15%  Similarity=0.163  Sum_probs=173.8

Q ss_pred             CCCeEEEcCCCCCccCCcccCCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCCChhhhcccCCcEEEcc
Q 038338          125 KDPIAISLPQRNIQELPERLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPSSLGRLINLQTLCLD  204 (421)
Q Consensus       125 ~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~  204 (421)
                      .+...|.+.+..+..+|..+ .++++.|++++|.+  ..+|..+   .++|++|++++|.++.+|..+.  .+|+.|+++
T Consensus       178 ~~~~~L~L~~~~LtsLP~~I-p~~L~~L~Ls~N~L--tsLP~~l---~~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls  249 (754)
T PRK15370        178 NNKTELRLKILGLTTIPACI-PEQITTLILDNNEL--KSLPENL---QGNIKTLYANSNQLTSIPATLP--DTIQEMELS  249 (754)
T ss_pred             cCceEEEeCCCCcCcCCccc-ccCCcEEEecCCCC--CcCChhh---ccCCCEEECCCCccccCChhhh--ccccEEECc
Confidence            45677888888887777643 25788999998875  5677765   3588999999998888887654  478999999


Q ss_pred             cccCCC-cccccCcCCCCEEEeeCCCCcccchhhcCCCCCCEEeccCCcCCcccchhhhcCCCCCcEEEcccCCCCCccc
Q 038338          205 WCQLED-VAAIGQLKKLEILNLADSNIEQLPLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNSFSGWEKV  283 (421)
Q Consensus       205 ~~~~~~-~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~  283 (421)
                      +|.+.. |..+.  .+|+.|++++|++..+|..+.  ++|++|++++| .+..+|.. +  .++|+.|++++|.+...+.
T Consensus       250 ~N~L~~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N-~Lt~LP~~-l--p~sL~~L~Ls~N~Lt~LP~  321 (754)
T PRK15370        250 INRITELPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDN-SIRTLPAH-L--PSGITHLNVQSNSLTALPE  321 (754)
T ss_pred             CCccCcCChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCCC-ccccCccc-c--hhhHHHHHhcCCccccCCc
Confidence            988887 66554  478999999888888887654  58999999886 45566653 2  2468888888887765432


Q ss_pred             cCCCCcChhhhcCCCCCCEEEEEecCccccCCcccccCCceEEEEEcCCccchhhhhhchhhhceeEEEcCCcccccccc
Q 038338          284 EGGSNASLVELKRLTKLTTLEIEVRDAEILLPDFVSVELQRYRIRIGDKLEYEIDQLLVKSEALRLMMLKGLEKVSILQE  363 (421)
Q Consensus       284 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~  363 (421)
                               .+  .++|+.|.+++|.+..+|..+. ++|+.|+++.+. +. .+|..+  .++|+.|++++|.+.   .+
T Consensus       322 ---------~l--~~sL~~L~Ls~N~Lt~LP~~l~-~sL~~L~Ls~N~-L~-~LP~~l--p~~L~~LdLs~N~Lt---~L  382 (754)
T PRK15370        322 ---------TL--PPGLKTLEAGENALTSLPASLP-PELQVLDVSKNQ-IT-VLPETL--PPTITTLDVSRNALT---NL  382 (754)
T ss_pred             ---------cc--cccceeccccCCccccCChhhc-CcccEEECCCCC-CC-cCChhh--cCCcCEEECCCCcCC---CC
Confidence                     11  2578888888888887776543 688888887443 33 344433  367888888887743   34


Q ss_pred             hhHHHHhhhcccEEEeccccCcccccccccc-cCCCCCccEEEEeecC
Q 038338          364 NDGTKMLLQRTEDLWLVKLEGVQNVVHELDD-GEGFPRLKHLHVESCY  410 (421)
Q Consensus       364 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-~~~~~~L~~L~i~~c~  410 (421)
                      |..+.   +.|+.|++++|.. ..+|..+.. ...+|++..|++.++|
T Consensus       383 P~~l~---~sL~~LdLs~N~L-~~LP~sl~~~~~~~~~l~~L~L~~Np  426 (754)
T PRK15370        383 PENLP---AALQIMQASRNNL-VRLPESLPHFRGEGPQPTRIIVEYNP  426 (754)
T ss_pred             CHhHH---HHHHHHhhccCCc-ccCchhHHHHhhcCCCccEEEeeCCC
Confidence            54433   4688888888765 355543320 1245788888888876

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.62  E-value=9.7e-15  Score=145.87  Aligned_cols=136  Identities=21%  Similarity=0.216  Sum_probs=86.2

Q ss_pred             cCCCeEEEcCCCCCccCCcccCCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCCChhhhcccCCcEEEc
Q 038338          124 RKDPIAISLPQRNIQELPERLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPSSLGRLINLQTLCL  203 (421)
Q Consensus       124 ~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l  203 (421)
                      ..+++.|.+.+|.+..+|..  .++|+.|++++|.+  ..+|..    .++|+.|++++|.++.+|...   ..|+.|++
T Consensus       221 ~~~L~~L~L~~N~Lt~LP~l--p~~Lk~LdLs~N~L--tsLP~l----p~sL~~L~Ls~N~L~~Lp~lp---~~L~~L~L  289 (788)
T PRK15387        221 PAHITTLVIPDNNLTSLPAL--PPELRTLEVSGNQL--TSLPVL----PPGLLELSIFSNPLTHLPALP---SGLCKLWI  289 (788)
T ss_pred             hcCCCEEEccCCcCCCCCCC--CCCCcEEEecCCcc--CcccCc----ccccceeeccCCchhhhhhch---hhcCEEEC
Confidence            34778888888888777753  57888888888875  445532    456777777777776665522   45667777


Q ss_pred             ccccCCC-cccccCcCCCCEEEeeCCCCcccchhhcCCCCCCEEeccCCcCCcccchhhhcCCCCCcEEEcccCCCCCc
Q 038338          204 DWCQLED-VAAIGQLKKLEILNLADSNIEQLPLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNSFSGWE  281 (421)
Q Consensus       204 ~~~~~~~-~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~  281 (421)
                      ++|.++. |..   .++|+.|++++|++..+|...   .+|+.|++++| .+..+|.  +  ..+|+.|++++|.+...
T Consensus       290 s~N~Lt~LP~~---p~~L~~LdLS~N~L~~Lp~lp---~~L~~L~Ls~N-~L~~LP~--l--p~~Lq~LdLS~N~Ls~L  357 (788)
T PRK15387        290 FGNQLTSLPVL---PPGLQELSVSDNQLASLPALP---SELCKLWAYNN-QLTSLPT--L--PSGLQELSVSDNQLASL  357 (788)
T ss_pred             cCCcccccccc---ccccceeECCCCccccCCCCc---ccccccccccC-ccccccc--c--ccccceEecCCCccCCC
Confidence            7777666 432   356777777777777666422   34555666664 3344443  1  23667777777666543

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.61  E-value=5.5e-17  Score=157.99  Aligned_cols=244  Identities=20%  Similarity=0.221  Sum_probs=153.7

Q ss_pred             CCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCCChhhhcccCCcEEEcccccCCC-cccccCcCCCCEE
Q 038338          145 QCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPSSLGRLINLQTLCLDWCQLED-VAAIGQLKKLEIL  223 (421)
Q Consensus       145 ~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~-~~~~~~l~~L~~L  223 (421)
                      .-++++.|....|.. . .....  ....+|++++++.+.+..+|.+++.+.+|+.++..+|.+.. |..+...++|+.|
T Consensus       217 ~g~~l~~L~a~~n~l-~-~~~~~--p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l  292 (1081)
T KOG0618|consen  217 SGPSLTALYADHNPL-T-TLDVH--PVPLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLVALPLRISRITSLVSL  292 (1081)
T ss_pred             cCcchheeeeccCcc-e-eeccc--cccccceeeecchhhhhcchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHH
Confidence            335555666655554 2 11111  12455666666666666666666666666666666666655 6666666666666


Q ss_pred             EeeCCCCcccchhhcCCCCCCEEeccCCcCCcccchhhhcCC-------------------------CCCcEEEcccCCC
Q 038338          224 NLADSNIEQLPLEIGQLTGLRLLDLTNCWSLQVIAPNVISKL-------------------------SRLEELYMDNSFS  278 (421)
Q Consensus       224 ~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l-------------------------~~L~~L~l~~~~~  278 (421)
                      .+..|.+..+|+....++.|++|++..| .+..+|...+..+                         +.|+.|.+.+|.+
T Consensus       293 ~~~~nel~yip~~le~~~sL~tLdL~~N-~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~L  371 (1081)
T KOG0618|consen  293 SAAYNELEYIPPFLEGLKSLRTLDLQSN-NLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHL  371 (1081)
T ss_pred             HhhhhhhhhCCCcccccceeeeeeehhc-cccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcc
Confidence            6666666666666666666666666553 4444444333322                         2344444444444


Q ss_pred             CCccccCCCCcChhhhcCCCCCCEEEEEecCccccCCcc--cccCCceEEEEEcCCccchhhhhhchhhhceeEEEcCCc
Q 038338          279 GWEKVEGGSNASLVELKRLTKLTTLEIEVRDAEILLPDF--VSVELQRYRIRIGDKLEYEIDQLLVKSEALRLMMLKGLE  356 (421)
Q Consensus       279 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~  356 (421)
                      +..        .+..+-+..+|+.|++++|.+..+|...  .+..|+.|+++ ++.+. .+|..+..++.|+.|...+|.
T Consensus       372 td~--------c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LS-GNkL~-~Lp~tva~~~~L~tL~ahsN~  441 (1081)
T KOG0618|consen  372 TDS--------CFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLS-GNKLT-TLPDTVANLGRLHTLRAHSNQ  441 (1081)
T ss_pred             ccc--------chhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcc-cchhh-hhhHHHHhhhhhHHHhhcCCc
Confidence            433        3466888889999999999998888875  44888888887 44555 567888889999999888866


Q ss_pred             ccccccchhHHHHhhhcccEEEeccccCcccc-cccccccCCCCCccEEEEeecCce
Q 038338          357 KVSILQENDGTKMLLQRTEDLWLVKLEGVQNV-VHELDDGEGFPRLKHLHVESCYEI  412 (421)
Q Consensus       357 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~~~~L~~L~i~~c~~L  412 (421)
                      +   ...| .+..+ +.|+.++++.|..-... +...    .-|+||+|+++|++.+
T Consensus       442 l---~~fP-e~~~l-~qL~~lDlS~N~L~~~~l~~~~----p~p~LkyLdlSGN~~l  489 (1081)
T KOG0618|consen  442 L---LSFP-ELAQL-PQLKVLDLSCNNLSEVTLPEAL----PSPNLKYLDLSGNTRL  489 (1081)
T ss_pred             e---eech-hhhhc-CcceEEecccchhhhhhhhhhC----CCcccceeeccCCccc
Confidence            3   2234 56666 89999999877654332 2222    2279999999998853

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.59  E-value=6.5e-15  Score=147.86  Aligned_cols=228  Identities=17%  Similarity=0.215  Sum_probs=174.7

Q ss_pred             ccCCCeEEEcCCCCCccCCcccCCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCCChhhhcccCCcEEE
Q 038338          123 IRKDPIAISLPQRNIQELPERLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPSSLGRLINLQTLC  202 (421)
Q Consensus       123 ~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~  202 (421)
                      ..++++.|++++|.+..+|... .++|+.|++++|.+  ..+|..+   ..+|+.|++++|.+..+|..+.  .+|++|+
T Consensus       197 Ip~~L~~L~Ls~N~LtsLP~~l-~~nL~~L~Ls~N~L--tsLP~~l---~~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~  268 (754)
T PRK15370        197 IPEQITTLILDNNELKSLPENL-QGNIKTLYANSNQL--TSIPATL---PDTIQEMELSINRITELPERLP--SALQSLD  268 (754)
T ss_pred             cccCCcEEEecCCCCCcCChhh-ccCCCEEECCCCcc--ccCChhh---hccccEEECcCCccCcCChhHh--CCCCEEE
Confidence            3568999999999998888654 36999999999986  5677755   3579999999999999998765  5899999


Q ss_pred             cccccCCC-cccccCcCCCCEEEeeCCCCcccchhhcCCCCCCEEeccCCcCCcccchhhhcCCCCCcEEEcccCCCCCc
Q 038338          203 LDWCQLED-VAAIGQLKKLEILNLADSNIEQLPLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNSFSGWE  281 (421)
Q Consensus       203 l~~~~~~~-~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~  281 (421)
                      +++|.+.. |..+.  .+|+.|++++|+++.+|..+.  ++|++|++++| .+..+|.. +  .++|+.|++++|.++..
T Consensus       269 Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls~N-~Lt~LP~~-l--~~sL~~L~Ls~N~Lt~L  340 (754)
T PRK15370        269 LFHNKISCLPENLP--EELRYLSVYDNSIRTLPAHLP--SGITHLNVQSN-SLTALPET-L--PPGLKTLEAGENALTSL  340 (754)
T ss_pred             CcCCccCccccccC--CCCcEEECCCCccccCcccch--hhHHHHHhcCC-ccccCCcc-c--cccceeccccCCccccC
Confidence            99999988 76654  589999999999999887554  57999999986 44566653 2  36899999999887654


Q ss_pred             cccCCCCcChhhhcCCCCCCEEEEEecCccccCCcccccCCceEEEEEcCCccchhhhhhchhhhceeEEEcCCcccccc
Q 038338          282 KVEGGSNASLVELKRLTKLTTLEIEVRDAEILLPDFVSVELQRYRIRIGDKLEYEIDQLLVKSEALRLMMLKGLEKVSIL  361 (421)
Q Consensus       282 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~  361 (421)
                      +.         .+.  ++|+.|++++|.+..+|..+ .++|+.|++..+ .+. .+|..+.  ++|+.|++++|.+.   
T Consensus       341 P~---------~l~--~sL~~L~Ls~N~L~~LP~~l-p~~L~~LdLs~N-~Lt-~LP~~l~--~sL~~LdLs~N~L~---  401 (754)
T PRK15370        341 PA---------SLP--PELQVLDVSKNQITVLPETL-PPTITTLDVSRN-ALT-NLPENLP--AALQIMQASRNNLV---  401 (754)
T ss_pred             Ch---------hhc--CcccEEECCCCCCCcCChhh-cCCcCEEECCCC-cCC-CCCHhHH--HHHHHHhhccCCcc---
Confidence            32         232  68999999999998888754 378999999754 333 3455443  47999999998853   


Q ss_pred             cchhHHHHh---hhcccEEEeccccCc
Q 038338          362 QENDGTKML---LQRTEDLWLVKLEGV  385 (421)
Q Consensus       362 ~~~~~~~~~---~~~L~~L~l~~~~~~  385 (421)
                      .+|..+..+   .+.+..|++.+|+..
T Consensus       402 ~LP~sl~~~~~~~~~l~~L~L~~Npls  428 (754)
T PRK15370        402 RLPESLPHFRGEGPQPTRIIVEYNPFS  428 (754)
T ss_pred             cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence            344444332   277899999998863

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.52  E-value=9.6e-14  Score=138.83  Aligned_cols=223  Identities=18%  Similarity=0.144  Sum_probs=170.7

Q ss_pred             cCCCeEEEcCCCCCccCCcccCCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCCChhhhcccCCcEEEc
Q 038338          124 RKDPIAISLPQRNIQELPERLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPSSLGRLINLQTLCL  203 (421)
Q Consensus       124 ~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l  203 (421)
                      +++++.|++++|.+..+|..  .++|+.|++++|.+  ..+|.    ..+.|+.|++++|.++.+|..   .++|++|++
T Consensus       241 p~~Lk~LdLs~N~LtsLP~l--p~sL~~L~Ls~N~L--~~Lp~----lp~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdL  309 (788)
T PRK15387        241 PPELRTLEVSGNQLTSLPVL--PPGLLELSIFSNPL--THLPA----LPSGLCKLWIFGNQLTSLPVL---PPGLQELSV  309 (788)
T ss_pred             CCCCcEEEecCCccCcccCc--ccccceeeccCCch--hhhhh----chhhcCEEECcCCcccccccc---ccccceeEC
Confidence            57899999999999888753  57899999999985  45554    246789999999999988863   468999999


Q ss_pred             ccccCCC-cccccCcCCCCEEEeeCCCCcccchhhcCCCCCCEEeccCCcCCcccchhhhcCCCCCcEEEcccCCCCCcc
Q 038338          204 DWCQLED-VAAIGQLKKLEILNLADSNIEQLPLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNSFSGWEK  282 (421)
Q Consensus       204 ~~~~~~~-~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~  282 (421)
                      ++|.+.. |...   .+|+.|++++|++..+|..   ..+|++|++++| .+..+|..    ..+|+.|++++|.+...+
T Consensus       310 S~N~L~~Lp~lp---~~L~~L~Ls~N~L~~LP~l---p~~Lq~LdLS~N-~Ls~LP~l----p~~L~~L~Ls~N~L~~LP  378 (788)
T PRK15387        310 SDNQLASLPALP---SELCKLWAYNNQLTSLPTL---PSGLQELSVSDN-QLASLPTL----PSELYKLWAYNNRLTSLP  378 (788)
T ss_pred             CCCccccCCCCc---ccccccccccCcccccccc---ccccceEecCCC-ccCCCCCC----CcccceehhhccccccCc
Confidence            9999888 5432   4578899999999988852   358999999995 55667752    357888899988876543


Q ss_pred             ccCCCCcChhhhcCCCCCCEEEEEecCccccCCcccccCCceEEEEEcCCccchhhhhhchhhhceeEEEcCCccccccc
Q 038338          283 VEGGSNASLVELKRLTKLTTLEIEVRDAEILLPDFVSVELQRYRIRIGDKLEYEIDQLLVKSEALRLMMLKGLEKVSILQ  362 (421)
Q Consensus       283 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~  362 (421)
                      .          +  ..+|+.|++++|.+..+|..  .++|+.|+++.+ .+. .+|..   +.+|+.|++++|.+.   .
T Consensus       379 ~----------l--~~~L~~LdLs~N~Lt~LP~l--~s~L~~LdLS~N-~Ls-sIP~l---~~~L~~L~Ls~NqLt---~  436 (788)
T PRK15387        379 A----------L--PSGLKELIVSGNRLTSLPVL--PSELKELMVSGN-RLT-SLPML---PSGLLSLSVYRNQLT---R  436 (788)
T ss_pred             c----------c--ccccceEEecCCcccCCCCc--ccCCCEEEccCC-cCC-CCCcc---hhhhhhhhhccCccc---c
Confidence            2          1  25789999999999888864  368999999754 344 34432   357888999998853   5


Q ss_pred             chhHHHHhhhcccEEEeccccCccccccc
Q 038338          363 ENDGTKMLLQRTEDLWLVKLEGVQNVVHE  391 (421)
Q Consensus       363 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~  391 (421)
                      +|..+.++ ++|+.|++++|+.....+..
T Consensus       437 LP~sl~~L-~~L~~LdLs~N~Ls~~~~~~  464 (788)
T PRK15387        437 LPESLIHL-SSETTVNLEGNPLSERTLQA  464 (788)
T ss_pred             cChHHhhc-cCCCeEECCCCCCCchHHHH
Confidence            77888887 99999999999887655443

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.51  E-value=7.5e-15  Score=136.20  Aligned_cols=40  Identities=10%  Similarity=-0.177  Sum_probs=18.0

Q ss_pred             hhceeEEEcCCccc--ccccchhHHHHhhhcccEEEeccccCc
Q 038338          345 EALRLMMLKGLEKV--SILQENDGTKMLLQRTEDLWLVKLEGV  385 (421)
Q Consensus       345 ~~L~~L~l~~~~~~--~~~~~~~~~~~~~~~L~~L~l~~~~~~  385 (421)
                      +.|++|++++|.+.  ........+... ++|+++++++|...
T Consensus       250 ~~L~~L~l~~n~i~~~~~~~l~~~~~~~-~~L~~l~l~~N~l~  291 (319)
T cd00116         250 ISLLTLSLSCNDITDDGAKDLAEVLAEK-ESLLELDLRGNKFG  291 (319)
T ss_pred             CCceEEEccCCCCCcHHHHHHHHHHhcC-CCccEEECCCCCCc
Confidence            45566666555532  111112222222 45566666555544

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.51  E-value=1.9e-15  Score=147.50  Aligned_cols=267  Identities=20%  Similarity=0.182  Sum_probs=152.0

Q ss_pred             CeEEEcCCCCCccCC--cccCCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCCChhhhcccCCcEEEcc
Q 038338          127 PIAISLPQRNIQELP--ERLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPSSLGRLINLQTLCLD  204 (421)
Q Consensus       127 l~~l~l~~~~~~~l~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~  204 (421)
                      +++|++..|.+-..|  ...+.-+|++|++++|..  ..+|..+ ..+.+|+.|.+++|.+...|.+.+.+.+|++|++.
T Consensus        23 ~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~--~~fp~~i-t~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~   99 (1081)
T KOG0618|consen   23 LQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQI--SSFPIQI-TLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLK   99 (1081)
T ss_pred             HHhhhccccccccCchHHhhheeeeEEeecccccc--ccCCchh-hhHHHHhhcccchhhHhhCchhhhhhhcchhheec
Confidence            445555555543322  111333466666666653  4445443 44566666666666666666666666666666666


Q ss_pred             cccCCC-cccccCcCCCCEEEeeCCCCcccchhhcCCCCCCEEeccCCcCCcccchh---------------hhcCCCCC
Q 038338          205 WCQLED-VAAIGQLKKLEILNLADSNIEQLPLEIGQLTGLRLLDLTNCWSLQVIAPN---------------VISKLSRL  268 (421)
Q Consensus       205 ~~~~~~-~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~---------------~l~~l~~L  268 (421)
                      .|.... |.++..+.+|++|+++.|.+..+|.-+..++.+..+..++|..+..++..               +......|
T Consensus       100 ~n~l~~lP~~~~~lknl~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l  179 (1081)
T KOG0618|consen  100 NNRLQSLPASISELKNLQYLDLSFNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNL  179 (1081)
T ss_pred             cchhhcCchhHHhhhcccccccchhccCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhh
Confidence            666655 66666666666666666666666666666666666665554222222211               01111112


Q ss_pred             cE-EEcccCCCCCccccCCCCcChhhhcCCCC--------------------CCEEEEEecCccccCCcccccCCceEEE
Q 038338          269 EE-LYMDNSFSGWEKVEGGSNASLVELKRLTK--------------------LTTLEIEVRDAEILLPDFVSVELQRYRI  327 (421)
Q Consensus       269 ~~-L~l~~~~~~~~~~~~~~~~~~~~l~~l~~--------------------L~~L~l~~~~~~~~~~~~~~~~L~~L~l  327 (421)
                      +. |+++.|.+. .          ..+..+.+                    |+.|....|.+...-......+|+.+++
T Consensus       180 ~~~ldLr~N~~~-~----------~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~di  248 (1081)
T KOG0618|consen  180 THQLDLRYNEME-V----------LDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDI  248 (1081)
T ss_pred             heeeecccchhh-h----------hhhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeeccccccccceeeec
Confidence            22 444444333 0          12222323                    3333333333332222223467777777


Q ss_pred             EEcCCccchhhhhhchhhhceeEEEcCCcccccccchhHHHHhhhcccEEEeccccCcccccccccccCCCCCccEEEEe
Q 038338          328 RIGDKLEYEIDQLLVKSEALRLMMLKGLEKVSILQENDGTKMLLQRTEDLWLVKLEGVQNVVHELDDGEGFPRLKHLHVE  407 (421)
Q Consensus       328 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~i~  407 (421)
                      +.. .+. .+|.+++.|.+|+.+.+.+|.+   ...|..+... .+|+.|.+..|. ++.+|....   ++.+|+.|++.
T Consensus       249 s~n-~l~-~lp~wi~~~~nle~l~~n~N~l---~~lp~ri~~~-~~L~~l~~~~ne-l~yip~~le---~~~sL~tLdL~  318 (1081)
T KOG0618|consen  249 SHN-NLS-NLPEWIGACANLEALNANHNRL---VALPLRISRI-TSLVSLSAAYNE-LEYIPPFLE---GLKSLRTLDLQ  318 (1081)
T ss_pred             chh-hhh-cchHHHHhcccceEecccchhH---HhhHHHHhhh-hhHHHHHhhhhh-hhhCCCccc---ccceeeeeeeh
Confidence            633 233 4578888889999998888774   4466666666 788888888776 466666554   89999999998


Q ss_pred             ecCceeeeccc
Q 038338          408 SCYEIVHIVGS  418 (421)
Q Consensus       408 ~c~~L~~l~~~  418 (421)
                      .+ +|.++++.
T Consensus       319 ~N-~L~~lp~~  328 (1081)
T KOG0618|consen  319 SN-NLPSLPDN  328 (1081)
T ss_pred             hc-cccccchH
Confidence            88 67777654

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.49  E-value=2.6e-14  Score=132.64  Aligned_cols=232  Identities=18%  Similarity=0.134  Sum_probs=137.1

Q ss_pred             hccCCCccEEEccCCCCCC-----CChhhhcccCCcEEEcccccCCC--------cccccCcCCCCEEEeeCCCCc-ccc
Q 038338          169 FEGTEELKVLSLIGIHFSS-----LPSSLGRLINLQTLCLDWCQLED--------VAAIGQLKKLEILNLADSNIE-QLP  234 (421)
Q Consensus       169 ~~~l~~L~~L~l~~~~~~~-----lp~~i~~l~~L~~L~l~~~~~~~--------~~~~~~l~~L~~L~l~~~~l~-~lp  234 (421)
                      +..+..|++|+++++.++.     ++..+...+.+++++++++.+..        +..+.++++|+.|++++|.+. ..+
T Consensus        19 ~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~   98 (319)
T cd00116          19 LPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGC   98 (319)
T ss_pred             HHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHH
Confidence            4556667777777766532     44445556667777776665541        234556667777777777665 333


Q ss_pred             hhhcCCCC---CCEEeccCCcCCcc----cchhhhcCC-CCCcEEEcccCCCCCccccCCCCcChhhhcCCCCCCEEEEE
Q 038338          235 LEIGQLTG---LRLLDLTNCWSLQV----IAPNVISKL-SRLEELYMDNSFSGWEKVEGGSNASLVELKRLTKLTTLEIE  306 (421)
Q Consensus       235 ~~~~~l~~---L~~L~l~~~~~~~~----~~~~~l~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~  306 (421)
                      ..+..+.+   |++|++++|.....    +.. .+..+ ++|++|++++|.++....    ......+..+++|++|+++
T Consensus        99 ~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~-~l~~~~~~L~~L~L~~n~l~~~~~----~~~~~~~~~~~~L~~L~l~  173 (319)
T cd00116          99 GVLESLLRSSSLQELKLNNNGLGDRGLRLLAK-GLKDLPPALEKLVLGRNRLEGASC----EALAKALRANRDLKELNLA  173 (319)
T ss_pred             HHHHHHhccCcccEEEeeCCccchHHHHHHHH-HHHhCCCCceEEEcCCCcCCchHH----HHHHHHHHhCCCcCEEECc
Confidence            44444444   77777777643311    111 24455 677777777776653211    1223456666777777777


Q ss_pred             ecCccc-----cCCcc-cccCCceEEEEEcCCcc---chhhhhhchhhhceeEEEcCCcccccccchhHHHHhh----hc
Q 038338          307 VRDAEI-----LLPDF-VSVELQRYRIRIGDKLE---YEIDQLLVKSEALRLMMLKGLEKVSILQENDGTKMLL----QR  373 (421)
Q Consensus       307 ~~~~~~-----~~~~~-~~~~L~~L~l~~~~~~~---~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~----~~  373 (421)
                      +|.++.     ++..+ ..++|+.|+++.+....   ..+...+..+++|+.|++++|.+..  .....+...+    +.
T Consensus       174 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~--~~~~~l~~~~~~~~~~  251 (319)
T cd00116         174 NNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTD--AGAAALASALLSPNIS  251 (319)
T ss_pred             CCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCch--HHHHHHHHHHhccCCC
Confidence            777642     11111 23578888776443221   1234556778999999999987432  1222233322    69


Q ss_pred             ccEEEeccccCcc----cccccccccCCCCCccEEEEeecC
Q 038338          374 TEDLWLVKLEGVQ----NVVHELDDGEGFPRLKHLHVESCY  410 (421)
Q Consensus       374 L~~L~l~~~~~~~----~~~~~~~~~~~~~~L~~L~i~~c~  410 (421)
                      |++|++.+|....    .+...+.   .+++|+.+++++|.
T Consensus       252 L~~L~l~~n~i~~~~~~~l~~~~~---~~~~L~~l~l~~N~  289 (319)
T cd00116         252 LLTLSLSCNDITDDGAKDLAEVLA---EKESLLELDLRGNK  289 (319)
T ss_pred             ceEEEccCCCCCcHHHHHHHHHHh---cCCCccEEECCCCC
Confidence            9999999997642    2223233   67899999999874

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.37  E-value=1.3e-12  Score=133.58  Aligned_cols=220  Identities=20%  Similarity=0.200  Sum_probs=140.3

Q ss_pred             cCccCCCeEEEcCCCC--CccCCc--ccCCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCCChhhhccc
Q 038338          121 ETIRKDPIAISLPQRN--IQELPE--RLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPSSLGRLI  196 (421)
Q Consensus       121 ~~~~~~l~~l~l~~~~--~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~  196 (421)
                      ....++++.|-+..+.  +..++.  +..+|.|++|++++|.. ...+|..+ +.+-+||+|+++++.++.+|.++++++
T Consensus       541 ~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~-l~~LP~~I-~~Li~LryL~L~~t~I~~LP~~l~~Lk  618 (889)
T KOG4658|consen  541 SSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSS-LSKLPSSI-GELVHLRYLDLSDTGISHLPSGLGNLK  618 (889)
T ss_pred             CCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCc-cCcCChHH-hhhhhhhcccccCCCccccchHHHHHH
Confidence            3445579999999886  566665  44899999999999887 78899887 899999999999999999999999999


Q ss_pred             CCcEEEcccccCCC--cccccCcCCCCEEEeeCCCCc---ccchhhcCCCCCCEEeccCCcCCcccchhhhcCCCCCcE-
Q 038338          197 NLQTLCLDWCQLED--VAAIGQLKKLEILNLADSNIE---QLPLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEE-  270 (421)
Q Consensus       197 ~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~l~---~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~-  270 (421)
                      .|.+|++..+....  |.....+++|++|.+......   ..-.++.++.+|+.+.......  .+... +..++.|.. 
T Consensus       619 ~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~--~~~e~-l~~~~~L~~~  695 (889)
T KOG4658|consen  619 KLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV--LLLED-LLGMTRLRSL  695 (889)
T ss_pred             hhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh--HhHhh-hhhhHHHHHH
Confidence            99999999988544  555566999999999987533   2223455666666666544321  11111 223333332 


Q ss_pred             ---EEcccCCCCCccccCCCCcChhhhcCCCCCCEEEEEecCccccCCcc-------c-ccCCceEEEEEcCCccchhhh
Q 038338          271 ---LYMDNSFSGWEKVEGGSNASLVELKRLTKLTTLEIEVRDAEILLPDF-------V-SVELQRYRIRIGDKLEYEIDQ  339 (421)
Q Consensus       271 ---L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-------~-~~~L~~L~l~~~~~~~~~~~~  339 (421)
                         +.+.++.         .......++.+.+|+.|.+..++..++....       . ++++..+.+..+.....  +.
T Consensus       696 ~~~l~~~~~~---------~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~--l~  764 (889)
T KOG4658|consen  696 LQSLSIEGCS---------KRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRD--LT  764 (889)
T ss_pred             hHhhhhcccc---------cceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccc--cc
Confidence               2221111         1123355777788888888777754322111       1 22333333332322221  22


Q ss_pred             hhchhhhceeEEEcCCc
Q 038338          340 LLVKSEALRLMMLKGLE  356 (421)
Q Consensus       340 ~~~~l~~L~~L~l~~~~  356 (421)
                      +..-.|+|+.|.+..|.
T Consensus       765 ~~~f~~~L~~l~l~~~~  781 (889)
T KOG4658|consen  765 WLLFAPHLTSLSLVSCR  781 (889)
T ss_pred             hhhccCcccEEEEeccc
Confidence            23344667777766654

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.37  E-value=2.6e-14  Score=127.09  Aligned_cols=123  Identities=24%  Similarity=0.265  Sum_probs=62.7

Q ss_pred             ccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCC-ChhhhcccCCcEEEccc-ccCCC-c-ccccCcCCCCEEE
Q 038338          149 LQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSL-PSSLGRLINLQTLCLDW-CQLED-V-AAIGQLKKLEILN  224 (421)
Q Consensus       149 L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~-~~~~~-~-~~~~~l~~L~~L~  224 (421)
                      ...+.+..|.+  ..+|...|+.+++||.|||++|+++.+ |..+..+..|..|-+.+ |+|++ | ..|.+|..|+.|.
T Consensus        69 tveirLdqN~I--~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLl  146 (498)
T KOG4237|consen   69 TVEIRLDQNQI--SSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLL  146 (498)
T ss_pred             ceEEEeccCCc--ccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHh
Confidence            34455555552  555555555566666666666655553 44455555555544444 55555 3 4455555555555


Q ss_pred             eeCCCCcccc-hhhcCCCCCCEEeccCCcCCcccchhhhcCCCCCcEEEcc
Q 038338          225 LADSNIEQLP-LEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMD  274 (421)
Q Consensus       225 l~~~~l~~lp-~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~  274 (421)
                      +.-|++..++ +.+..+++|..|.+.+ +..+.++...+..+.+++++.+.
T Consensus       147 lNan~i~Cir~~al~dL~~l~lLslyD-n~~q~i~~~tf~~l~~i~tlhlA  196 (498)
T KOG4237|consen  147 LNANHINCIRQDALRDLPSLSLLSLYD-NKIQSICKGTFQGLAAIKTLHLA  196 (498)
T ss_pred             cChhhhcchhHHHHHHhhhcchhcccc-hhhhhhccccccchhccchHhhh
Confidence            5555555333 2345555555555555 23344444334444444444433

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.28  E-value=1.2e-13  Score=123.00  Aligned_cols=281  Identities=18%  Similarity=0.155  Sum_probs=181.4

Q ss_pred             CCCcccccccCccCCCeEEEcCCCCCccCCccc--CCCCccEEEeeecCCCCcccChHHhccCCCccEEEccC-CCCCCC
Q 038338          112 VADLEKKMEETIRKDPIAISLPQRNIQELPERL--QCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIG-IHFSSL  188 (421)
Q Consensus       112 ~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~l  188 (421)
                      +..+..+| ..-+.+...+.+..|.+..+|+..  .+++||.|++++|.+  ..+....|.+++.|..|-+.+ |.++++
T Consensus        55 ~~GL~eVP-~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~I--s~I~p~AF~GL~~l~~Lvlyg~NkI~~l  131 (498)
T KOG4237|consen   55 GKGLTEVP-ANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNI--SFIAPDAFKGLASLLSLVLYGNNKITDL  131 (498)
T ss_pred             CCCcccCc-ccCCCcceEEEeccCCcccCChhhccchhhhceecccccch--hhcChHhhhhhHhhhHHHhhcCCchhhh
Confidence            33444444 345667888889999998888554  888999999999985  666666678888877766665 788888


Q ss_pred             Chh-hhcccCCcEEEcccccCCC--cccccCcCCCCEEEeeCCCCcccch-hhcCCCCCCEEeccCCcCCc---------
Q 038338          189 PSS-LGRLINLQTLCLDWCQLED--VAAIGQLKKLEILNLADSNIEQLPL-EIGQLTGLRLLDLTNCWSLQ---------  255 (421)
Q Consensus       189 p~~-i~~l~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~---------  255 (421)
                      |+. ++.+..|+-|.+..|.+.-  ...+..+++|..|.+..|.+..++. .+..+..++++.+..+...-         
T Consensus       132 ~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~  211 (498)
T KOG4237|consen  132 PKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLAD  211 (498)
T ss_pred             hhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhh
Confidence            865 7888889988888888776  6788889999999999998888877 57788888888776543110         


Q ss_pred             ---ccchhhhcCCCCCcEEEcccCCCCCccccCCCCcChhhhcCCCCCCEEEEEecCccccCCcc---cccCCceEEEEE
Q 038338          256 ---VIAPNVISKLSRLEELYMDNSFSGWEKVEGGSNASLVELKRLTKLTTLEIEVRDAEILLPDF---VSVELQRYRIRI  329 (421)
Q Consensus       256 ---~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~---~~~~L~~L~l~~  329 (421)
                         ..|.+ ++.....+...+.+..+..+..    ..+...   ...+..--.+.+....+.+..   ..++|++++++ 
T Consensus       212 ~~a~~~ie-tsgarc~~p~rl~~~Ri~q~~a----~kf~c~---~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnls-  282 (498)
T KOG4237|consen  212 DLAMNPIE-TSGARCVSPYRLYYKRINQEDA----RKFLCS---LESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLS-  282 (498)
T ss_pred             HHhhchhh-cccceecchHHHHHHHhcccch----hhhhhh---HHhHHHhhccccCcCCcChHHHHhhcccceEeccC-
Confidence               11111 2222222222233322222211    011111   111111111122222222222   34888888887 


Q ss_pred             cCCccchhhhhhchhhhceeEEEcCCcccccccchhHHHHhhhcccEEEeccccCcccccccccccCCCCCccEEEEeec
Q 038338          330 GDKLEYEIDQLLVKSEALRLMMLKGLEKVSILQENDGTKMLLQRTEDLWLVKLEGVQNVVHELDDGEGFPRLKHLHVESC  409 (421)
Q Consensus       330 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~i~~c  409 (421)
                      ++.++..-+.++.+...++.|.+.+|++-..  ...-+.++ ..|+.|++.+|......|..+.   .+..|..|++..+
T Consensus       283 nN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v--~~~~f~~l-s~L~tL~L~~N~it~~~~~aF~---~~~~l~~l~l~~N  356 (498)
T KOG4237|consen  283 NNKITRIEDGAFEGAAELQELYLTRNKLEFV--SSGMFQGL-SGLKTLSLYDNQITTVAPGAFQ---TLFSLSTLNLLSN  356 (498)
T ss_pred             CCccchhhhhhhcchhhhhhhhcCcchHHHH--HHHhhhcc-ccceeeeecCCeeEEEeccccc---ccceeeeeehccC
Confidence            5666666677888889999999999774221  12234555 8999999999988777676666   7778888888766


Q ss_pred             C
Q 038338          410 Y  410 (421)
Q Consensus       410 ~  410 (421)
                      |
T Consensus       357 p  357 (498)
T KOG4237|consen  357 P  357 (498)
T ss_pred             c
Confidence            5

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.15  E-value=1.5e-12  Score=121.25  Aligned_cols=181  Identities=24%  Similarity=0.351  Sum_probs=154.4

Q ss_pred             ccCCCeEEEcCCCCCccCCccc-CCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCCChhhhcccCCcEE
Q 038338          123 IRKDPIAISLPQRNIQELPERL-QCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPSSLGRLINLQTL  201 (421)
Q Consensus       123 ~~~~l~~l~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L  201 (421)
                      .+......+++.|.+..+|..+ .|..|..+.+..|.+  ..+|..+ ..+..|.+|+++.|+++.+|..++.|+ |++|
T Consensus        73 ~ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~--r~ip~~i-~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvl  148 (722)
T KOG0532|consen   73 DLTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCI--RTIPEAI-CNLEALTFLDLSSNQLSHLPDGLCDLP-LKVL  148 (722)
T ss_pred             cccchhhhhccccccccCchHHHHHHHHHHHHHHhccc--eecchhh-hhhhHHHHhhhccchhhcCChhhhcCc-ceeE
Confidence            3456667888888888888666 778888888888875  6677765 779999999999999999999888886 9999


Q ss_pred             EcccccCCC-cccccCcCCCCEEEeeCCCCcccchhhcCCCCCCEEeccCCcCCcccchhhhcCCCCCcEEEcccCCCCC
Q 038338          202 CLDWCQLED-VAAIGQLKKLEILNLADSNIEQLPLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNSFSGW  280 (421)
Q Consensus       202 ~l~~~~~~~-~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  280 (421)
                      -+++|+++. |..++.+..|..||.+.|.+..+|..++.+.+|+.|.+..| .+..+|.+ +..| .|..||+++|.+..
T Consensus       149 i~sNNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn-~l~~lp~E-l~~L-pLi~lDfScNkis~  225 (722)
T KOG0532|consen  149 IVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRN-HLEDLPEE-LCSL-PLIRLDFSCNKISY  225 (722)
T ss_pred             EEecCccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhh-hhhhCCHH-HhCC-ceeeeecccCceee
Confidence            999999998 99999889999999999999999999999999999999984 66778887 5644 58999999998877


Q ss_pred             ccccCCCCcChhhhcCCCCCCEEEEEecCccccCCcccc
Q 038338          281 EKVEGGSNASLVELKRLTKLTTLEIEVRDAEILLPDFVS  319 (421)
Q Consensus       281 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~  319 (421)
                      .+         ..+.+|++|++|.+.+|.+..-|..++.
T Consensus       226 iP---------v~fr~m~~Lq~l~LenNPLqSPPAqIC~  255 (722)
T KOG0532|consen  226 LP---------VDFRKMRHLQVLQLENNPLQSPPAQICE  255 (722)
T ss_pred             cc---------hhhhhhhhheeeeeccCCCCCChHHHHh
Confidence            65         4689999999999999999887777644

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.12  E-value=5.2e-11  Score=98.11  Aligned_cols=108  Identities=23%  Similarity=0.270  Sum_probs=22.1

Q ss_pred             CCcccCCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCCChhhhcccCCcEEEcccccCCC-cccc-cCc
Q 038338          140 LPERLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPSSLGRLINLQTLCLDWCQLED-VAAI-GQL  217 (421)
Q Consensus       140 l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~-~~~~-~~l  217 (421)
                      ++...+..+++.|++.+|.+  ..+.. +-..+.+|++|++++|.++.++. +..+.+|++|++++|.++. .+.+ ..+
T Consensus        12 ~~~~~n~~~~~~L~L~~n~I--~~Ie~-L~~~l~~L~~L~Ls~N~I~~l~~-l~~L~~L~~L~L~~N~I~~i~~~l~~~l   87 (175)
T PF14580_consen   12 IAQYNNPVKLRELNLRGNQI--STIEN-LGATLDKLEVLDLSNNQITKLEG-LPGLPRLKTLDLSNNRISSISEGLDKNL   87 (175)
T ss_dssp             --------------------------S---TT-TT--EEE-TTS--S--TT-----TT--EEE--SS---S-CHHHHHH-
T ss_pred             cccccccccccccccccccc--ccccc-hhhhhcCCCEEECCCCCCccccC-ccChhhhhhcccCCCCCCccccchHHhC
Confidence            33333444455555555543  11211 10124455555555555554432 4445555555555555544 2333 234


Q ss_pred             CCCCEEEeeCCCCcccc--hhhcCCCCCCEEeccCC
Q 038338          218 KKLEILNLADSNIEQLP--LEIGQLTGLRLLDLTNC  251 (421)
Q Consensus       218 ~~L~~L~l~~~~l~~lp--~~~~~l~~L~~L~l~~~  251 (421)
                      ++|++|++++|++..+.  ..+..+++|++|++.+|
T Consensus        88 p~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~N  123 (175)
T PF14580_consen   88 PNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGN  123 (175)
T ss_dssp             TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-
T ss_pred             CcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCC
Confidence            55555555555444221  22344455555555443

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.12  E-value=2.2e-12  Score=120.07  Aligned_cols=195  Identities=21%  Similarity=0.209  Sum_probs=146.0

Q ss_pred             CCCccEEEccCCCCCCCChhhhcccCCcEEEcccccCCC-cccccCcCCCCEEEeeCCCCcccchhhcCCCCCCEEeccC
Q 038338          172 TEELKVLSLIGIHFSSLPSSLGRLINLQTLCLDWCQLED-VAAIGQLKKLEILNLADSNIEQLPLEIGQLTGLRLLDLTN  250 (421)
Q Consensus       172 l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~-~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~  250 (421)
                      +..-...|++.|.+..+|...+.+..|+.+.+..|.+.. |..+.++..|.+||++.|.+..+|..++.|+ |+.|-+++
T Consensus        74 ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sN  152 (722)
T KOG0532|consen   74 LTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSN  152 (722)
T ss_pred             ccchhhhhccccccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEec
Confidence            344455678888888888888888888888888888877 8888888888888888888888888888777 78888777


Q ss_pred             CcCCcccchhhhcCCCCCcEEEcccCCCCCccccCCCCcChhhhcCCCCCCEEEEEecCccccCCcccccCCceEEEEEc
Q 038338          251 CWSLQVIAPNVISKLSRLEELYMDNSFSGWEKVEGGSNASLVELKRLTKLTTLEIEVRDAEILLPDFVSVELQRYRIRIG  330 (421)
Q Consensus       251 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~  330 (421)
                       +.+..+|.+ ++.+..|..|+.+.|.+...+         ..++++..|+.|.++.|++..+|+.+..-.|..|+++ |
T Consensus       153 -Nkl~~lp~~-ig~~~tl~~ld~s~nei~slp---------sql~~l~slr~l~vrRn~l~~lp~El~~LpLi~lDfS-c  220 (722)
T KOG0532|consen  153 -NKLTSLPEE-IGLLPTLAHLDVSKNEIQSLP---------SQLGYLTSLRDLNVRRNHLEDLPEELCSLPLIRLDFS-C  220 (722)
T ss_pred             -CccccCCcc-cccchhHHHhhhhhhhhhhch---------HHhhhHHHHHHHHHhhhhhhhCCHHHhCCceeeeecc-c
Confidence             466777776 677778888888887765543         4578888888888888888888888777778888887 6


Q ss_pred             CCccchhhhhhchhhhceeEEEcCCcccccccchhHHH--HhhhcccEEEecccc
Q 038338          331 DKLEYEIDQLLVKSEALRLMMLKGLEKVSILQENDGTK--MLLQRTEDLWLVKLE  383 (421)
Q Consensus       331 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~--~~~~~L~~L~l~~~~  383 (421)
                      +... .+|..+.++..|++|.|.+|.+.   .-|..+.  ....-.++|++.-|.
T Consensus       221 Nkis-~iPv~fr~m~~Lq~l~LenNPLq---SPPAqIC~kGkVHIFKyL~~qA~q  271 (722)
T KOG0532|consen  221 NKIS-YLPVDFRKMRHLQVLQLENNPLQ---SPPAQICEKGKVHIFKYLSTQACQ  271 (722)
T ss_pred             Ccee-ecchhhhhhhhheeeeeccCCCC---CChHHHHhccceeeeeeecchhcc
Confidence            6666 57888888888898888886632   1222222  222556777777773

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.12  E-value=1.6e-11  Score=111.04  Aligned_cols=63  Identities=19%  Similarity=0.035  Sum_probs=27.7

Q ss_pred             ccCCCeEEEcCCCCCccCCc--cc-CCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCC
Q 038338          123 IRKDPIAISLPQRNIQELPE--RL-QCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHF  185 (421)
Q Consensus       123 ~~~~l~~l~l~~~~~~~l~~--~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~  185 (421)
                      ..++++.+++.++.+...+.  .. .|++++.|++++|-+..-.....+...+++|+.|+++.|.+
T Consensus       119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl  184 (505)
T KOG3207|consen  119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRL  184 (505)
T ss_pred             hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccc
Confidence            34555555555555543331  11 55555555555554311111122233445555555555443

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.10  E-value=1.2e-10  Score=95.92  Aligned_cols=127  Identities=23%  Similarity=0.278  Sum_probs=55.1

Q ss_pred             ccCccCCCeEEEcCCCCCccCCccc-CCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCCChhh-hcccC
Q 038338          120 EETIRKDPIAISLPQRNIQELPERL-QCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPSSL-GRLIN  197 (421)
Q Consensus       120 ~~~~~~~l~~l~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i-~~l~~  197 (421)
                      ........+.|++.++.+..+.... .+.+|++|++++|.+  ..+..  +..++.|++|++++|.++.++..+ ..+++
T Consensus        14 ~~~n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I--~~l~~--l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~   89 (175)
T PF14580_consen   14 QYNNPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQI--TKLEG--LPGLPRLKTLDLSNNRISSISEGLDKNLPN   89 (175)
T ss_dssp             ----------------------S--TT-TT--EEE-TTS----S--TT------TT--EEE--SS---S-CHHHHHH-TT
T ss_pred             ccccccccccccccccccccccchhhhhcCCCEEECCCCCC--ccccC--ccChhhhhhcccCCCCCCccccchHHhCCc
Confidence            3444557899999999998887766 689999999999986  55554  467999999999999999987655 46899


Q ss_pred             CcEEEcccccCCC---cccccCcCCCCEEEeeCCCCcccch----hhcCCCCCCEEeccC
Q 038338          198 LQTLCLDWCQLED---VAAIGQLKKLEILNLADSNIEQLPL----EIGQLTGLRLLDLTN  250 (421)
Q Consensus       198 L~~L~l~~~~~~~---~~~~~~l~~L~~L~l~~~~l~~lp~----~~~~l~~L~~L~l~~  250 (421)
                      |+.|.+++|.+.+   ...++.+++|+.|++.+|.++.-+.    -+..+|+|+.||-..
T Consensus        90 L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~  149 (175)
T PF14580_consen   90 LQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQD  149 (175)
T ss_dssp             --EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEE
T ss_pred             CCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEE
Confidence            9999999999877   5778889999999999999885543    256678888887544

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.08  E-value=1.1e-11  Score=106.79  Aligned_cols=187  Identities=16%  Similarity=0.161  Sum_probs=134.2

Q ss_pred             ccCccCCCeEEEcCCCCCccCCccc-CCCCccEEEeeecCCCCc--ccChHH-------------------hccCCCccE
Q 038338          120 EETIRKDPIAISLPQRNIQELPERL-QCPNLQLFLLFRQGYGPV--QISDLF-------------------FEGTEELKV  177 (421)
Q Consensus       120 ~~~~~~~l~~l~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~--~~~~~~-------------------~~~l~~L~~  177 (421)
                      .....+++..+.++.+..+.+.... .-|.|+++.+.+......  -+|...                   ....+.|..
T Consensus       209 ~l~~f~~l~~~~~s~~~~~~i~~~~~~kptl~t~~v~~s~~~~~~~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~Lte  288 (490)
T KOG1259|consen  209 NLNAFRNLKTLKFSALSTENIVDIELLKPTLQTICVHNTTIQDVPSLLPETILADPSGSEPSTSNGSALVSADTWQELTE  288 (490)
T ss_pred             chHHhhhhheeeeeccchhheeceeecCchhheeeeecccccccccccchhhhcCccCCCCCccCCceEEecchHhhhhh
Confidence            3445677888888888776666555 557788887765432000  011000                   011356788


Q ss_pred             EEccCCCCCCCChhhhcccCCcEEEcccccCCCcccccCcCCCCEEEeeCCCCcccchhhcCCCCCCEEeccCCcCCccc
Q 038338          178 LSLIGIHFSSLPSSLGRLINLQTLCLDWCQLEDVAAIGQLKKLEILNLADSNIEQLPLEIGQLTGLRLLDLTNCWSLQVI  257 (421)
Q Consensus       178 L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~  257 (421)
                      ||+++|.++.+..++.-.+.++.|++++|.+....++..+++|+.||+++|.++.+..+-.++-+...|.++.| .+..+
T Consensus       289 lDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N-~iE~L  367 (490)
T KOG1259|consen  289 LDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQN-KIETL  367 (490)
T ss_pred             ccccccchhhhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehhhh-hHhhh
Confidence            88888888888778888888888888888888866688888888888888888877666677888888888884 55666


Q ss_pred             chhhhcCCCCCcEEEcccCCCCCccccCCCCcChhhhcCCCCCCEEEEEecCccccCCc
Q 038338          258 APNVISKLSRLEELYMDNSFSGWEKVEGGSNASLVELKRLTKLTTLEIEVRDAEILLPD  316 (421)
Q Consensus       258 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~  316 (421)
                      ..  ++++-+|..|++++|.+.....       ...+++++.|+.+.+.+|++..++..
T Consensus       368 SG--L~KLYSLvnLDl~~N~Ie~lde-------V~~IG~LPCLE~l~L~~NPl~~~vdY  417 (490)
T KOG1259|consen  368 SG--LRKLYSLVNLDLSSNQIEELDE-------VNHIGNLPCLETLRLTGNPLAGSVDY  417 (490)
T ss_pred             hh--hHhhhhheeccccccchhhHHH-------hcccccccHHHHHhhcCCCccccchH
Confidence            54  7888888888888887765433       26688888888888888887666543

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.05  E-value=3.5e-11  Score=108.86  Aligned_cols=204  Identities=15%  Similarity=0.051  Sum_probs=144.8

Q ss_pred             CCCCccEEEeeecCCCCcccCh-HHhccCCCccEEEccCCCCCC---CChhhhcccCCcEEEcccccCCCc---ccccCc
Q 038338          145 QCPNLQLFLLFRQGYGPVQISD-LFFEGTEELKVLSLIGIHFSS---LPSSLGRLINLQTLCLDWCQLEDV---AAIGQL  217 (421)
Q Consensus       145 ~~~~L~~L~l~~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~---lp~~i~~l~~L~~L~l~~~~~~~~---~~~~~l  217 (421)
                      ++++|+...+.++..  ...+. .....+++++.|||+.|-+..   +-.-...+++|+.|+++.|++..|   ..-..+
T Consensus       119 n~kkL~~IsLdn~~V--~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l  196 (505)
T KOG3207|consen  119 NLKKLREISLDNYRV--EDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL  196 (505)
T ss_pred             hHHhhhheeecCccc--cccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence            788999999988875  33331 334679999999999997654   334467799999999999986652   222367


Q ss_pred             CCCCEEEeeCCCCc--ccchhhcCCCCCCEEeccCCcCCcccchhhhcCCCCCcEEEcccCCCCCccccCCCCcChhhhc
Q 038338          218 KKLEILNLADSNIE--QLPLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNSFSGWEKVEGGSNASLVELK  295 (421)
Q Consensus       218 ~~L~~L~l~~~~l~--~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~  295 (421)
                      .+|+.|.++.|+++  .+..-+..+++|..|++..|+....-... ...++.|++|++++|.+.....       ....+
T Consensus       197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~-~~i~~~L~~LdLs~N~li~~~~-------~~~~~  268 (505)
T KOG3207|consen  197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATS-TKILQTLQELDLSNNNLIDFDQ-------GYKVG  268 (505)
T ss_pred             hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecch-hhhhhHHhhccccCCccccccc-------ccccc
Confidence            88999999999888  44444567899999999987432222222 4567889999999987665543       25678


Q ss_pred             CCCCCCEEEEEecCccc--cCCc------ccccCCceEEEEEcCCccchhhhhhchhhhceeEEEcCCccc
Q 038338          296 RLTKLTTLEIEVRDAEI--LLPD------FVSVELQRYRIRIGDKLEYEIDQLLVKSEALRLMMLKGLEKV  358 (421)
Q Consensus       296 ~l~~L~~L~l~~~~~~~--~~~~------~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~  358 (421)
                      .++.|+.|.+..+.+.+  +|+.      ..+++|+.|.+..++..+|.....+..+++|+.|.+..|+++
T Consensus       269 ~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln  339 (505)
T KOG3207|consen  269 TLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN  339 (505)
T ss_pred             cccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence            88899999998888653  2332      244788888887666656655566777777888877776643

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.91  E-value=3.4e-10  Score=97.84  Aligned_cols=175  Identities=17%  Similarity=0.155  Sum_probs=78.8

Q ss_pred             ccCCCccEEEccCCCCCCCChhhhcccCCcEEEcccccCCC-c------------------------ccccCcCCCCEEE
Q 038338          170 EGTEELKVLSLIGIHFSSLPSSLGRLINLQTLCLDWCQLED-V------------------------AAIGQLKKLEILN  224 (421)
Q Consensus       170 ~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~-~------------------------~~~~~l~~L~~L~  224 (421)
                      .-+++|+.+.++.|.-+.+-.-...-+.|+++.+++..+.. |                        ..+..++.|.++|
T Consensus       211 ~~f~~l~~~~~s~~~~~~i~~~~~~kptl~t~~v~~s~~~~~~~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelD  290 (490)
T KOG1259|consen  211 NAFRNLKTLKFSALSTENIVDIELLKPTLQTICVHNTTIQDVPSLLPETILADPSGSEPSTSNGSALVSADTWQELTELD  290 (490)
T ss_pred             HHhhhhheeeeeccchhheeceeecCchhheeeeecccccccccccchhhhcCccCCCCCccCCceEEecchHhhhhhcc
Confidence            34566777777766543322212223456666666554433 1                        1222334555555


Q ss_pred             eeCCCCcccchhhcCCCCCCEEeccCCcCCcccchhhhcCCCCCcEEEcccCCCCCccccCCCCcChhhhcCCCCCCEEE
Q 038338          225 LADSNIEQLPLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNSFSGWEKVEGGSNASLVELKRLTKLTTLE  304 (421)
Q Consensus       225 l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~  304 (421)
                      +++|.|+.+..++.-.++++.|++++|. +..+..  +..+++|+.|++++|.+....         .+-.++.+.++|.
T Consensus       291 LS~N~I~~iDESvKL~Pkir~L~lS~N~-i~~v~n--La~L~~L~~LDLS~N~Ls~~~---------Gwh~KLGNIKtL~  358 (490)
T KOG1259|consen  291 LSGNLITQIDESVKLAPKLRRLILSQNR-IRTVQN--LAELPQLQLLDLSGNLLAECV---------GWHLKLGNIKTLK  358 (490)
T ss_pred             ccccchhhhhhhhhhccceeEEeccccc-eeeehh--hhhcccceEeecccchhHhhh---------hhHhhhcCEeeee
Confidence            5555555555555555555555555532 222222  445555555555555443221         1122344555555


Q ss_pred             EEecCccccCCcccccCCceEEEEEcCCccchhhhhhchhhhceeEEEcCCc
Q 038338          305 IEVRDAEILLPDFVSVELQRYRIRIGDKLEYEIDQLLVKSEALRLMMLKGLE  356 (421)
Q Consensus       305 l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~  356 (421)
                      +..|.++.+...-..=+|..|++.+++.-...-...++++|.|+.+.+.+|.
T Consensus       359 La~N~iE~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NP  410 (490)
T KOG1259|consen  359 LAQNKIETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNP  410 (490)
T ss_pred             hhhhhHhhhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCC
Confidence            5555544333322233344444432222222222334444444444444433

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.90  E-value=1.3e-09  Score=104.11  Aligned_cols=143  Identities=29%  Similarity=0.358  Sum_probs=60.7

Q ss_pred             CccEEEccCCCCCCCChhhhcccCCcEEEcccccCCC-cccccCcCCCCEEEeeCCCCcccchhhcCCCCCCEEeccCCc
Q 038338          174 ELKVLSLIGIHFSSLPSSLGRLINLQTLCLDWCQLED-VAAIGQLKKLEILNLADSNIEQLPLEIGQLTGLRLLDLTNCW  252 (421)
Q Consensus       174 ~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~-~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~  252 (421)
                      +|+.|+++++.+..+|..++.+++|+.|+++.|.+.+ +...+.+++|+.|+++++++..+|..+.....|+++.+++|.
T Consensus       141 nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~  220 (394)
T COG4886         141 NLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNS  220 (394)
T ss_pred             hcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCc
Confidence            4444444444444444444444444444444444444 333334444444444444444444444344444444444432


Q ss_pred             CCcccchhhhcCCCCCcEEEcccCCCCCccccCCCCcChhhhcCCCCCCEEEEEecCccccCCcccccCCceEEE
Q 038338          253 SLQVIAPNVISKLSRLEELYMDNSFSGWEKVEGGSNASLVELKRLTKLTTLEIEVRDAEILLPDFVSVELQRYRI  327 (421)
Q Consensus       253 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l  327 (421)
                      ..... .. +.++.++..+.+.+|.+...         ...++.+.++++|+++.|.+..++......+++.|++
T Consensus       221 ~~~~~-~~-~~~~~~l~~l~l~~n~~~~~---------~~~~~~l~~l~~L~~s~n~i~~i~~~~~~~~l~~L~~  284 (394)
T COG4886         221 IIELL-SS-LSNLKNLSGLELSNNKLEDL---------PESIGNLSNLETLDLSNNQISSISSLGSLTNLRELDL  284 (394)
T ss_pred             ceecc-hh-hhhcccccccccCCceeeec---------cchhccccccceeccccccccccccccccCccCEEec
Confidence            11111 11 33444444444333332221         1234444444455554444444444223344444444

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.87  E-value=2.5e-09  Score=102.28  Aligned_cols=182  Identities=27%  Similarity=0.304  Sum_probs=150.0

Q ss_pred             ccCccCCCeEEEcCCCCCccCCcccCCC--CccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCCChhhhcccC
Q 038338          120 EETIRKDPIAISLPQRNIQELPERLQCP--NLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPSSLGRLIN  197 (421)
Q Consensus       120 ~~~~~~~l~~l~l~~~~~~~l~~~~~~~--~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~  197 (421)
                      .....+.++.+++.++.+..++......  +|+.|++++|.+  ..++... +.+++|+.|+++.|.+..+|...+.+..
T Consensus       111 ~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i--~~l~~~~-~~l~~L~~L~l~~N~l~~l~~~~~~~~~  187 (394)
T COG4886         111 ELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKI--ESLPSPL-RNLPNLKNLDLSFNDLSDLPKLLSNLSN  187 (394)
T ss_pred             hhhcccceeEEecCCcccccCccccccchhhcccccccccch--hhhhhhh-hccccccccccCCchhhhhhhhhhhhhh
Confidence            4445578999999999998898877553  899999999985  6664343 7899999999999999999998779999


Q ss_pred             CcEEEcccccCCC-cccccCcCCCCEEEeeCCCCcccchhhcCCCCCCEEeccCCcCCcccchhhhcCCCCCcEEEcccC
Q 038338          198 LQTLCLDWCQLED-VAAIGQLKKLEILNLADSNIEQLPLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNS  276 (421)
Q Consensus       198 L~~L~l~~~~~~~-~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~  276 (421)
                      |+.|++++|.+.. |..+.....|++|.+++|.+...+..+.++.++..+.+.++ .....+.. ++.+++++.|++++|
T Consensus       188 L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n-~~~~~~~~-~~~l~~l~~L~~s~n  265 (394)
T COG4886         188 LNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNN-KLEDLPES-IGNLSNLETLDLSNN  265 (394)
T ss_pred             hhheeccCCccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCc-eeeeccch-hccccccceeccccc
Confidence            9999999999999 77777888899999999987788888999999999997775 33333333 789999999999999


Q ss_pred             CCCCccccCCCCcChhhhcCCCCCCEEEEEecCccccCCc
Q 038338          277 FSGWEKVEGGSNASLVELKRLTKLTTLEIEVRDAEILLPD  316 (421)
Q Consensus       277 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~  316 (421)
                      .+....          .++.+.+++.|+++++.+...+..
T Consensus       266 ~i~~i~----------~~~~~~~l~~L~~s~n~~~~~~~~  295 (394)
T COG4886         266 QISSIS----------SLGSLTNLRELDLSGNSLSNALPL  295 (394)
T ss_pred             cccccc----------cccccCccCEEeccCccccccchh
Confidence            877653          388899999999999887544433

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.81  E-value=3e-10  Score=98.04  Aligned_cols=178  Identities=19%  Similarity=0.115  Sum_probs=99.9

Q ss_pred             CCCEEEeeCCCCc--ccchhhcCCCCCCEEeccCCcCCcccchhhhcCCCCCcEEEcccC-CCCCccccCCCCcChhhhc
Q 038338          219 KLEILNLADSNIE--QLPLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNS-FSGWEKVEGGSNASLVELK  295 (421)
Q Consensus       219 ~L~~L~l~~~~l~--~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~~l~  295 (421)
                      .||+||+++..++  .+..-+..+.+|+.|.+.+......+... +.+-.+|+.|+++.+ .++..       +.---+.
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~-iAkN~~L~~lnlsm~sG~t~n-------~~~ll~~  257 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNT-IAKNSNLVRLNLSMCSGFTEN-------ALQLLLS  257 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHH-Hhccccceeeccccccccchh-------HHHHHHH
Confidence            4777777776665  44444556677777777775444444444 566677777777763 22221       1123356


Q ss_pred             CCCCCCEEEEEecCcc-c-cCCcc--cccCCceEEEEEcCC--ccchhhhhhchhhhceeEEEcCCcccccccchhHHHH
Q 038338          296 RLTKLTTLEIEVRDAE-I-LLPDF--VSVELQRYRIRIGDK--LEYEIDQLLVKSEALRLMMLKGLEKVSILQENDGTKM  369 (421)
Q Consensus       296 ~l~~L~~L~l~~~~~~-~-~~~~~--~~~~L~~L~l~~~~~--~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~  369 (421)
                      +++.|.+|+++||.+. + +...+  -.++|..|+++++..  ....+..-...||+|..|++++|.-. ...+...+-+
T Consensus       258 scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l-~~~~~~~~~k  336 (419)
T KOG2120|consen  258 SCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVML-KNDCFQEFFK  336 (419)
T ss_pred             hhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeecccccccc-CchHHHHHHh
Confidence            6777777777777642 1 11111  226677777765422  11122233456788888888875511 1122222333


Q ss_pred             hhhcccEEEeccccCcc-cccccccccCCCCCccEEEEeec
Q 038338          370 LLQRTEDLWLVKLEGVQ-NVVHELDDGEGFPRLKHLHVESC  409 (421)
Q Consensus       370 ~~~~L~~L~l~~~~~~~-~~~~~~~~~~~~~~L~~L~i~~c  409 (421)
                       |+.|++|.+++|..+. ....++   ...|.|.+|++.+|
T Consensus       337 -f~~L~~lSlsRCY~i~p~~~~~l---~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  337 -FNYLQHLSLSRCYDIIPETLLEL---NSKPSLVYLDVFGC  373 (419)
T ss_pred             -cchheeeehhhhcCCChHHeeee---ccCcceEEEEeccc
Confidence             3778888888887642 111222   37788888888776

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.78  E-value=3e-09  Score=93.98  Aligned_cols=163  Identities=17%  Similarity=0.143  Sum_probs=85.7

Q ss_pred             ccCCCCccEEEeeecCCCCcc--cChHHhccCCCccEEEccCCCCC----CCChh-------hhcccCCcEEEcccccCC
Q 038338          143 RLQCPNLQLFLLFRQGYGPVQ--ISDLFFEGTEELKVLSLIGIHFS----SLPSS-------LGRLINLQTLCLDWCQLE  209 (421)
Q Consensus       143 ~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~----~lp~~-------i~~l~~L~~L~l~~~~~~  209 (421)
                      ...+..++.+++++|.++...  .....+.+.+.|+..++++-...    .+|..       +..+++|++++++.|-+.
T Consensus        26 ~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G  105 (382)
T KOG1909|consen   26 LEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFG  105 (382)
T ss_pred             hcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccC
Confidence            336778888888888762211  22233456678888888775321    24433       334557888888887755


Q ss_pred             C--c----ccccCcCCCCEEEeeCCCCcccch--------------hhcCCCCCCEEeccCCcCCcccch----hhhcCC
Q 038338          210 D--V----AAIGQLKKLEILNLADSNIEQLPL--------------EIGQLTGLRLLDLTNCWSLQVIAP----NVISKL  265 (421)
Q Consensus       210 ~--~----~~~~~l~~L~~L~l~~~~l~~lp~--------------~~~~l~~L~~L~l~~~~~~~~~~~----~~l~~l  265 (421)
                      .  +    .-+++++.|++|++.+|++.....              -+..-++|+.+...+| .+..-+.    ..+...
T Consensus       106 ~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rN-rlen~ga~~~A~~~~~~  184 (382)
T KOG1909|consen  106 PKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRN-RLENGGATALAEAFQSH  184 (382)
T ss_pred             ccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecc-ccccccHHHHHHHHHhc
Confidence            4  3    334566777888887776652111              1223345555555443 2222111    123444


Q ss_pred             CCCcEEEcccCCCCCccccCCCCcChhhhcCCCCCCEEEEEecCc
Q 038338          266 SRLEELYMDNSFSGWEKVEGGSNASLVELKRLTKLTTLEIEVRDA  310 (421)
Q Consensus       266 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  310 (421)
                      +.|+.+.+..|.+...    +.......+..+++|+.|++..|-+
T Consensus       185 ~~leevr~~qN~I~~e----G~~al~eal~~~~~LevLdl~DNtf  225 (382)
T KOG1909|consen  185 PTLEEVRLSQNGIRPE----GVTALAEALEHCPHLEVLDLRDNTF  225 (382)
T ss_pred             cccceEEEecccccCc----hhHHHHHHHHhCCcceeeecccchh
Confidence            5555555555443322    1123344455555555555555544

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.77  E-value=2.2e-10  Score=98.80  Aligned_cols=178  Identities=20%  Similarity=0.121  Sum_probs=86.4

Q ss_pred             CcEEEcccccCCC---cccccCcCCCCEEEeeCCCCc-ccchhhcCCCCCCEEeccCCcCCcccch-hhhcCCCCCcEEE
Q 038338          198 LQTLCLDWCQLED---VAAIGQLKKLEILNLADSNIE-QLPLEIGQLTGLRLLDLTNCWSLQVIAP-NVISKLSRLEELY  272 (421)
Q Consensus       198 L~~L~l~~~~~~~---~~~~~~l~~L~~L~l~~~~l~-~lp~~~~~l~~L~~L~l~~~~~~~~~~~-~~l~~l~~L~~L~  272 (421)
                      |++||++...++.   ..-++.+.+|+.|.+.+..+. .+...+.+-.+|+.|+++.|+.+.+... -.+.+++.|+.|+
T Consensus       187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LN  266 (419)
T KOG2120|consen  187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELN  266 (419)
T ss_pred             hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcC
Confidence            5555555555443   233444555555555555544 3333444555555555555544443222 1244556666666


Q ss_pred             cccCCCCCccccCCCCcChhhhcCCCCCCEEEEEecCc----cccCCcc-cccCCceEEEEEcCCccchhhhhhchhhhc
Q 038338          273 MDNSFSGWEKVEGGSNASLVELKRLTKLTTLEIEVRDA----EILLPDF-VSVELQRYRIRIGDKLEYEIDQLLVKSEAL  347 (421)
Q Consensus       273 l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~----~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L  347 (421)
                      +++|......+.    .....++  ++|+.|+++++.-    ..+.... .+++|..|+++++..+.......+-+++.|
T Consensus       267 lsWc~l~~~~Vt----v~V~his--e~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L  340 (419)
T KOG2120|consen  267 LSWCFLFTEKVT----VAVAHIS--ETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYL  340 (419)
T ss_pred             chHhhccchhhh----HHHhhhc--hhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchh
Confidence            666554433321    0111111  3555566655431    1111111 446677777766665555555556666777


Q ss_pred             eeEEEcCCcccccccchhHHHHhhhcccEEEecccc
Q 038338          348 RLMMLKGLEKVSILQENDGTKMLLQRTEDLWLVKLE  383 (421)
Q Consensus       348 ~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  383 (421)
                      ++|.+++|+.-.. ...-.+... |.|.+|++.+|-
T Consensus       341 ~~lSlsRCY~i~p-~~~~~l~s~-psl~yLdv~g~v  374 (419)
T KOG2120|consen  341 QHLSLSRCYDIIP-ETLLELNSK-PSLVYLDVFGCV  374 (419)
T ss_pred             eeeehhhhcCCCh-HHeeeeccC-cceEEEEecccc
Confidence            7777777652100 001112333 677777776654

>PLN03150 hypothetical protein; Provisional

Probab=98.66  E-value=7.3e-08  Score=96.81  Aligned_cols=104  Identities=22%  Similarity=0.292  Sum_probs=72.9

Q ss_pred             CCcEEEcccccCCC--cccccCcCCCCEEEeeCCCCc-ccchhhcCCCCCCEEeccCCcCCcccchhhhcCCCCCcEEEc
Q 038338          197 NLQTLCLDWCQLED--VAAIGQLKKLEILNLADSNIE-QLPLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYM  273 (421)
Q Consensus       197 ~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~l~-~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l  273 (421)
                      .++.|++++|.+..  |..++++++|+.|++++|.+. .+|..++.+++|+.|++++|...+.+|.. ++++++|+.|++
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~-l~~L~~L~~L~L  497 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPES-LGQLTSLRILNL  497 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchH-HhcCCCCCEEEC
Confidence            36677777777765  677777788888888877776 67777777888888888877666666665 677788888888


Q ss_pred             ccCCCCCccccCCCCcChhhhcC-CCCCCEEEEEecC
Q 038338          274 DNSFSGWEKVEGGSNASLVELKR-LTKLTTLEIEVRD  309 (421)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~l~~-l~~L~~L~l~~~~  309 (421)
                      ++|.+....+        ..++. ..++..+++.+|.
T Consensus       498 s~N~l~g~iP--------~~l~~~~~~~~~l~~~~N~  526 (623)
T PLN03150        498 NGNSLSGRVP--------AALGGRLLHRASFNFTDNA  526 (623)
T ss_pred             cCCcccccCC--------hHHhhccccCceEEecCCc
Confidence            7777665544        33443 2355666776665

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.62  E-value=6.1e-09  Score=92.05  Aligned_cols=232  Identities=15%  Similarity=0.101  Sum_probs=113.4

Q ss_pred             CccCCCeEEEcCCCCCcc-----CCcc-cCCCCccEEEeeecCC--CCcccCh------HHhccCCCccEEEccCCCCCC
Q 038338          122 TIRKDPIAISLPQRNIQE-----LPER-LQCPNLQLFLLFRQGY--GPVQISD------LFFEGTEELKVLSLIGIHFSS  187 (421)
Q Consensus       122 ~~~~~l~~l~l~~~~~~~-----l~~~-~~~~~L~~L~l~~~~~--~~~~~~~------~~~~~l~~L~~L~l~~~~~~~  187 (421)
                      .....++.+++++|.++.     +... .+.++|+..+++.-..  ....+|.      ..+-++++|++|+||+|-+..
T Consensus        27 ~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~  106 (382)
T KOG1909|consen   27 EPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGP  106 (382)
T ss_pred             cccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCc
Confidence            345566667777666621     1111 1445565555543221  0111111      112234567777777765532


Q ss_pred             -----CChhhhcccCCcEEEcccccCCC--c-------------ccccCcCCCCEEEeeCCCCccc-----chhhcCCCC
Q 038338          188 -----LPSSLGRLINLQTLCLDWCQLED--V-------------AAIGQLKKLEILNLADSNIEQL-----PLEIGQLTG  242 (421)
Q Consensus       188 -----lp~~i~~l~~L~~L~l~~~~~~~--~-------------~~~~~l~~L~~L~l~~~~l~~l-----p~~~~~l~~  242 (421)
                           +-.-+..+..|+.|.+.+|.+..  -             ..+.+-++|+.+...+|.+...     ...+...+.
T Consensus       107 ~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~  186 (382)
T KOG1909|consen  107 KGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPT  186 (382)
T ss_pred             cchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccc
Confidence                 22234556666666666666443  1             1223345666776666665522     233455666


Q ss_pred             CCEEeccCCcCCcc---cchhhhcCCCCCcEEEcccCCCCCccccCCCCcChhhhcCCCCCCEEEEEecCcc-----ccC
Q 038338          243 LRLLDLTNCWSLQV---IAPNVISKLSRLEELYMDNSFSGWEKVEGGSNASLVELKRLTKLTTLEIEVRDAE-----ILL  314 (421)
Q Consensus       243 L~~L~l~~~~~~~~---~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-----~~~  314 (421)
                      |+.+.+..|..-..   +....+..+++|++|++..|.++...    ..+....+...++|+.|.++.|.++     .+.
T Consensus       187 leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~eg----s~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~  262 (382)
T KOG1909|consen  187 LEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEG----SVALAKALSSWPHLRELNLGDCLLENEGAIAFV  262 (382)
T ss_pred             cceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHH----HHHHHHHhcccchheeecccccccccccHHHHH
Confidence            66666666432211   11122556667777777666555432    2233445556666666666666542     111


Q ss_pred             Ccc--cccCCceEEEEEcCCccc---hhhhhhchhhhceeEEEcCCcc
Q 038338          315 PDF--VSVELQRYRIRIGDKLEY---EIDQLLVKSEALRLMMLKGLEK  357 (421)
Q Consensus       315 ~~~--~~~~L~~L~l~~~~~~~~---~~~~~~~~l~~L~~L~l~~~~~  357 (421)
                      ..+  ..++|+.+.+.++.....   .+..+....|.|+.|++++|.+
T Consensus       263 ~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  263 DALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             HHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence            111  235666666653332221   1223334456666666666553

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.61  E-value=1.9e-09  Score=97.29  Aligned_cols=279  Identities=18%  Similarity=0.129  Sum_probs=167.7

Q ss_pred             CCCeEEEcCCCCC---ccCCccc-CCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCC-CCC--CChhhhcccC
Q 038338          125 KDPIAISLPQRNI---QELPERL-QCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIH-FSS--LPSSLGRLIN  197 (421)
Q Consensus       125 ~~l~~l~l~~~~~---~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~--lp~~i~~l~~  197 (421)
                      ..++.+++.++.-   ..+.... .+|+++.|.+.++...+......+-..+.+|++|++..|. ++.  +-.-...+++
T Consensus       138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k  217 (483)
T KOG4341|consen  138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK  217 (483)
T ss_pred             cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence            4667788887765   2333333 8899999988888763333444555678999999999863 443  2233456889


Q ss_pred             CcEEEccccc-CCC--c-ccccCcCCCCEEEeeCCC-Cc--ccchhhcCCCCCCEEeccCCcCCcccchh-hhcCCCCCc
Q 038338          198 LQTLCLDWCQ-LED--V-AAIGQLKKLEILNLADSN-IE--QLPLEIGQLTGLRLLDLTNCWSLQVIAPN-VISKLSRLE  269 (421)
Q Consensus       198 L~~L~l~~~~-~~~--~-~~~~~l~~L~~L~l~~~~-l~--~lp~~~~~l~~L~~L~l~~~~~~~~~~~~-~l~~l~~L~  269 (421)
                      |.+|++++|. +.+  . .-......++.+.+.+|. ..  .+-..-..+..+-.+++.+|..+...... +-..+..||
T Consensus       218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq  297 (483)
T KOG4341|consen  218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQ  297 (483)
T ss_pred             HHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhh
Confidence            9999999987 443  2 333455667777666652 11  22111123444555666666555443321 122466788


Q ss_pred             EEEcccCCCCCccccCCCCcChhhhc-CCCCCCEEEEEecC-ccccCCcc---cccCCceEEEEEcCCccch-hhhhhch
Q 038338          270 ELYMDNSFSGWEKVEGGSNASLVELK-RLTKLTTLEIEVRD-AEILLPDF---VSVELQRYRIRIGDKLEYE-IDQLLVK  343 (421)
Q Consensus       270 ~L~l~~~~~~~~~~~~~~~~~~~~l~-~l~~L~~L~l~~~~-~~~~~~~~---~~~~L~~L~l~~~~~~~~~-~~~~~~~  343 (421)
                      .|..+++.....       .....++ +..+|+.+.+..+. ++......   ..+.|+.+++..+...... +-.--.+
T Consensus       298 ~l~~s~~t~~~d-------~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~  370 (483)
T KOG4341|consen  298 VLCYSSCTDITD-------EVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRN  370 (483)
T ss_pred             hhcccCCCCCch-------HHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccC
Confidence            888777543221       1223443 56788888888877 33222111   4488888888766554433 3344457


Q ss_pred             hhhceeEEEcCCcccccc--c-chhHHHHhhhcccEEEeccccCcccccccccccCCCCCccEEEEeecCcee
Q 038338          344 SEALRLMMLKGLEKVSIL--Q-ENDGTKMLLQRTEDLWLVKLEGVQNVVHELDDGEGFPRLKHLHVESCYEIV  413 (421)
Q Consensus       344 l~~L~~L~l~~~~~~~~~--~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~i~~c~~L~  413 (421)
                      |+.|+.|.+++|..-+..  . ...+-... ..|+.|.+.+|+.+.+...+.  ...+++|+.+++.+|....
T Consensus       371 C~~lr~lslshce~itD~gi~~l~~~~c~~-~~l~~lEL~n~p~i~d~~Le~--l~~c~~Leri~l~~~q~vt  440 (483)
T KOG4341|consen  371 CPRLRVLSLSHCELITDEGIRHLSSSSCSL-EGLEVLELDNCPLITDATLEH--LSICRNLERIELIDCQDVT  440 (483)
T ss_pred             CchhccCChhhhhhhhhhhhhhhhhccccc-cccceeeecCCCCchHHHHHH--HhhCcccceeeeechhhhh
Confidence            889999999987632111  0 01111223 678888889998875543222  3488899998888886543

>PLN03150 hypothetical protein; Provisional

Probab=98.61  E-value=1.4e-07  Score=94.81  Aligned_cols=103  Identities=21%  Similarity=0.368  Sum_probs=90.7

Q ss_pred             CccEEEccCCCCCC-CChhhhcccCCcEEEcccccCCC--cccccCcCCCCEEEeeCCCCc-ccchhhcCCCCCCEEecc
Q 038338          174 ELKVLSLIGIHFSS-LPSSLGRLINLQTLCLDWCQLED--VAAIGQLKKLEILNLADSNIE-QLPLEIGQLTGLRLLDLT  249 (421)
Q Consensus       174 ~L~~L~l~~~~~~~-lp~~i~~l~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~l~-~lp~~~~~l~~L~~L~l~  249 (421)
                      .++.|+|+++.+.. +|..++.+.+|+.|++++|.+..  |..++.+++|+.|++++|++. .+|..++++++|++|+++
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            47889999999875 89999999999999999999886  788999999999999999998 789999999999999999


Q ss_pred             CCcCCcccchhhhcC-CCCCcEEEcccCC
Q 038338          250 NCWSLQVIAPNVISK-LSRLEELYMDNSF  277 (421)
Q Consensus       250 ~~~~~~~~~~~~l~~-l~~L~~L~l~~~~  277 (421)
                      +|...+.+|.. ++. ..++..+++.+|.
T Consensus       499 ~N~l~g~iP~~-l~~~~~~~~~l~~~~N~  526 (623)
T PLN03150        499 GNSLSGRVPAA-LGGRLLHRASFNFTDNA  526 (623)
T ss_pred             CCcccccCChH-HhhccccCceEEecCCc
Confidence            99888888886 554 3567788888774

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.54  E-value=8.5e-08  Score=64.86  Aligned_cols=56  Identities=32%  Similarity=0.455  Sum_probs=27.2

Q ss_pred             CccEEEccCCCCCCCCh-hhhcccCCcEEEcccccCCC--cccccCcCCCCEEEeeCCC
Q 038338          174 ELKVLSLIGIHFSSLPS-SLGRLINLQTLCLDWCQLED--VAAIGQLKKLEILNLADSN  229 (421)
Q Consensus       174 ~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~  229 (421)
                      +|++|++++|.++.+|. .+..+++|++|++++|.+..  +..+..+++|++|++++|+
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            34555555555544432 34445555555555555444  3344555555555555443

...

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.52  E-value=6.6e-09  Score=99.62  Aligned_cols=107  Identities=27%  Similarity=0.384  Sum_probs=59.3

Q ss_pred             ccCCCccEEEccCCCCCCCChhhhcccCCcEEEcccccCCCcccccCcCCCCEEEeeCCCCcccchhhcCCCCCCEEecc
Q 038338          170 EGTEELKVLSLIGIHFSSLPSSLGRLINLQTLCLDWCQLEDVAAIGQLKKLEILNLADSNIEQLPLEIGQLTGLRLLDLT  249 (421)
Q Consensus       170 ~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~  249 (421)
                      ..+++|..|++.+|.+..+...+..+.+|++|++++|.++...++..++.|+.|++.+|.+..+. ++..+++|+.++++
T Consensus        92 ~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~N~i~~~~-~~~~l~~L~~l~l~  170 (414)
T KOG0531|consen   92 SKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNLSGNLISDIS-GLESLKSLKLLDLS  170 (414)
T ss_pred             ccccceeeeeccccchhhcccchhhhhcchheeccccccccccchhhccchhhheeccCcchhcc-CCccchhhhcccCC
Confidence            44566666666666665554445556666666666666666555556666666666666665543 34446666666666


Q ss_pred             CCcCCcccch-hhhcCCCCCcEEEcccCCCC
Q 038338          250 NCWSLQVIAP-NVISKLSRLEELYMDNSFSG  279 (421)
Q Consensus       250 ~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~  279 (421)
                      +|. +..+.. . +..+.+++.+++.+|.+.
T Consensus       171 ~n~-i~~ie~~~-~~~~~~l~~l~l~~n~i~  199 (414)
T KOG0531|consen  171 YNR-IVDIENDE-LSELISLEELDLGGNSIR  199 (414)
T ss_pred             cch-hhhhhhhh-hhhccchHHHhccCCchh
Confidence            642 222222 1 245555666666555444

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.48  E-value=6.9e-08  Score=96.84  Aligned_cols=147  Identities=20%  Similarity=0.286  Sum_probs=101.3

Q ss_pred             cCCCeEEEcCCCCC--ccCC-ccc-CCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCCChhhhcccCCc
Q 038338          124 RKDPIAISLPQRNI--QELP-ERL-QCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPSSLGRLINLQ  199 (421)
Q Consensus       124 ~~~l~~l~l~~~~~--~~l~-~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~  199 (421)
                      ..++++|++.+...  ...+ ... .+|.|++|.+.+-.+ ..+-...++.++++|+.||+++++++.+ .+++.+++|+
T Consensus       121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~-~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq  198 (699)
T KOG3665|consen  121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQF-DNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQ  198 (699)
T ss_pred             HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCcee-cchhHHHHhhccCccceeecCCCCccCc-HHHhccccHH
Confidence            45788888887654  2222 222 789999999988766 3333445568899999999999999888 6789999999


Q ss_pred             EEEcccccCCC---cccccCcCCCCEEEeeCCCCcccchhh-------cCCCCCCEEeccCCcCCcccchhhhcCCCCCc
Q 038338          200 TLCLDWCQLED---VAAIGQLKKLEILNLADSNIEQLPLEI-------GQLTGLRLLDLTNCWSLQVIAPNVISKLSRLE  269 (421)
Q Consensus       200 ~L~l~~~~~~~---~~~~~~l~~L~~L~l~~~~l~~lp~~~-------~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~  269 (421)
                      +|.+++-.+..   ...+.+|++|+.||++..+....+.-+       ..|++|+.||.+++.....+....+..-++|+
T Consensus       199 ~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~  278 (699)
T KOG3665|consen  199 VLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQ  278 (699)
T ss_pred             HHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHh
Confidence            99998877765   567888999999999987544333211       24778888888775443333333333444444


Q ss_pred             EEE
Q 038338          270 ELY  272 (421)
Q Consensus       270 ~L~  272 (421)
                      ...
T Consensus       279 ~i~  281 (699)
T KOG3665|consen  279 QIA  281 (699)
T ss_pred             hhh
Confidence            443

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.48  E-value=1.2e-09  Score=104.93  Aligned_cols=179  Identities=20%  Similarity=0.133  Sum_probs=120.2

Q ss_pred             ccCccCCCeEEEcCCCCCccCCcccCCC-CccEEEeeecCCC--------CcccChHHhccCCCccEEEccCCCCCCCCh
Q 038338          120 EETIRKDPIAISLPQRNIQELPERLQCP-NLQLFLLFRQGYG--------PVQISDLFFEGTEELKVLSLIGIHFSSLPS  190 (421)
Q Consensus       120 ~~~~~~~l~~l~l~~~~~~~l~~~~~~~-~L~~L~l~~~~~~--------~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~  190 (421)
                      .+...+.+|+|.+.++++........+. .|+.|.-.+..-.        .+++...+  ....|.+.+.++|.+..+-.
T Consensus       104 ~ifpF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~--~Wn~L~~a~fsyN~L~~mD~  181 (1096)
T KOG1859|consen  104 SIFPFRSLRVLELRGCDLSTAKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSP--VWNKLATASFSYNRLVLMDE  181 (1096)
T ss_pred             eeccccceeeEEecCcchhhhhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccch--hhhhHhhhhcchhhHHhHHH
Confidence            4566788999999999885544333221 2333332211000        11221111  12457777888888877777


Q ss_pred             hhhcccCCcEEEcccccCCCcccccCcCCCCEEEeeCCCCcccchhhcCCCCCCEEeccCCcCCcccchhhhcCCCCCcE
Q 038338          191 SLGRLINLQTLCLDWCQLEDVAAIGQLKKLEILNLADSNIEQLPLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEE  270 (421)
Q Consensus       191 ~i~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~  270 (421)
                      ++.-+++|+.|++++|++.+...+..+++|++||+++|.++.+|.--..-.+|+.|.+++| -+..+-.  +.++++|+.
T Consensus       182 SLqll~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN-~l~tL~g--ie~LksL~~  258 (1096)
T KOG1859|consen  182 SLQLLPALESLNLSHNKFTKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNN-ALTTLRG--IENLKSLYG  258 (1096)
T ss_pred             HHHHHHHhhhhccchhhhhhhHHHHhcccccccccccchhccccccchhhhhheeeeeccc-HHHhhhh--HHhhhhhhc
Confidence            8888999999999999998866899999999999999999888753222234899999885 4455544  678999999


Q ss_pred             EEcccCCCCCccccCCCCcChhhhcCCCCCCEEEEEecCc
Q 038338          271 LYMDNSFSGWEKVEGGSNASLVELKRLTKLTTLEIEVRDA  310 (421)
Q Consensus       271 L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  310 (421)
                      ||+++|.+.....       +.-+..+..|+.|.+.+|.+
T Consensus       259 LDlsyNll~~hse-------L~pLwsLs~L~~L~LeGNPl  291 (1096)
T KOG1859|consen  259 LDLSYNLLSEHSE-------LEPLWSLSSLIVLWLEGNPL  291 (1096)
T ss_pred             cchhHhhhhcchh-------hhHHHHHHHHHHHhhcCCcc
Confidence            9999887654422       24455666777788877764

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.41  E-value=1.6e-08  Score=96.93  Aligned_cols=173  Identities=23%  Similarity=0.307  Sum_probs=83.6

Q ss_pred             cCccCCCeEEEcCCCCCccCCc-ccCCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCCChhhhcccCCc
Q 038338          121 ETIRKDPIAISLPQRNIQELPE-RLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPSSLGRLINLQ  199 (421)
Q Consensus       121 ~~~~~~l~~l~l~~~~~~~l~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~  199 (421)
                      .....++..+++.++.+..+.. ...+++|++|++++|.+  ..+..  +..++.|+.|++++|.+..+.. +..+..|+
T Consensus        91 l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I--~~i~~--l~~l~~L~~L~l~~N~i~~~~~-~~~l~~L~  165 (414)
T KOG0531|consen   91 LSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKI--TKLEG--LSTLTLLKELNLSGNLISDISG-LESLKSLK  165 (414)
T ss_pred             cccccceeeeeccccchhhcccchhhhhcchheecccccc--ccccc--hhhccchhhheeccCcchhccC-Cccchhhh
Confidence            3445556666666666655555 34556666666666554  22222  1334555666666665554432 33355566


Q ss_pred             EEEcccccCCCccc--ccCcCCCCEEEeeCCCCcccchhhcCCCCCCEEeccCCcCCcccchhhhcCCCC--CcEEEccc
Q 038338          200 TLCLDWCQLEDVAA--IGQLKKLEILNLADSNIEQLPLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSR--LEELYMDN  275 (421)
Q Consensus       200 ~L~l~~~~~~~~~~--~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~--L~~L~l~~  275 (421)
                      .+++++|.+...+.  ...+.+++.+++.+|.+..+. ++..+..+..+++..+ .+..+..  +..+..  |+.+.+.+
T Consensus       166 ~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~-~~~~~~~l~~~~l~~n-~i~~~~~--l~~~~~~~L~~l~l~~  241 (414)
T KOG0531|consen  166 LLDLSYNRIVDIENDELSELISLEELDLGGNSIREIE-GLDLLKKLVLLSLLDN-KISKLEG--LNELVMLHLRELYLSG  241 (414)
T ss_pred             cccCCcchhhhhhhhhhhhccchHHHhccCCchhccc-chHHHHHHHHhhcccc-cceeccC--cccchhHHHHHHhccc
Confidence            66666655555222  455555555656555554332 2222333333333332 1111111  122222  56666666


Q ss_pred             CCCCCccccCCCCcChhhhcCCCCCCEEEEEecCcc
Q 038338          276 SFSGWEKVEGGSNASLVELKRLTKLTTLEIEVRDAE  311 (421)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  311 (421)
                      |.+....         ..+..+..+..|++..+.+.
T Consensus       242 n~i~~~~---------~~~~~~~~l~~l~~~~n~~~  268 (414)
T KOG0531|consen  242 NRISRSP---------EGLENLKNLPVLDLSSNRIS  268 (414)
T ss_pred             Ccccccc---------ccccccccccccchhhcccc
Confidence            5544321         23455566666666665554

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.40  E-value=2.9e-07  Score=62.22  Aligned_cols=57  Identities=33%  Similarity=0.574  Sum_probs=28.3

Q ss_pred             CCCEEEeeCCCCcccch-hhcCCCCCCEEeccCCcCCcccchhhhcCCCCCcEEEcccC
Q 038338          219 KLEILNLADSNIEQLPL-EIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNS  276 (421)
Q Consensus       219 ~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~  276 (421)
                      +|++|++++|+++.+|. .+..+++|++|++++| .+..++++.+..+++|++|++++|
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N   59 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNN-NLTSIPPDAFSNLPNLRYLDLSNN   59 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSS-SESEEETTTTTTSTTESEEEETSS
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCC-ccCccCHHHHcCCCCCCEEeCcCC
Confidence            44555555555555543 2444555555555543 334444444555555555555544

...

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.36  E-value=1.9e-07  Score=81.05  Aligned_cols=82  Identities=24%  Similarity=0.338  Sum_probs=55.2

Q ss_pred             ccCCCccEEEccCCCCCC---CChhhhcccCCcEEEcccccCCC-cccc-cCcCCCCEEEeeCCCCc--ccchhhcCCCC
Q 038338          170 EGTEELKVLSLIGIHFSS---LPSSLGRLINLQTLCLDWCQLED-VAAI-GQLKKLEILNLADSNIE--QLPLEIGQLTG  242 (421)
Q Consensus       170 ~~l~~L~~L~l~~~~~~~---lp~~i~~l~~L~~L~l~~~~~~~-~~~~-~~l~~L~~L~l~~~~l~--~lp~~~~~l~~  242 (421)
                      ...+.++.+|+.+|.+++   +..-..++++|++|+++.|.+.. ...+ ..+.+|+.|-+.++.+.  .....+..++.
T Consensus        68 ~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~  147 (418)
T KOG2982|consen   68 SSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPK  147 (418)
T ss_pred             HHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchh
Confidence            456777777777777654   44445677888888888877666 4444 46677788888777654  44455666777


Q ss_pred             CCEEeccCC
Q 038338          243 LRLLDLTNC  251 (421)
Q Consensus       243 L~~L~l~~~  251 (421)
                      +++|.++.|
T Consensus       148 vtelHmS~N  156 (418)
T KOG2982|consen  148 VTELHMSDN  156 (418)
T ss_pred             hhhhhhccc
Confidence            777777664

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.24  E-value=4.2e-08  Score=88.83  Aligned_cols=277  Identities=15%  Similarity=0.067  Sum_probs=146.0

Q ss_pred             cCccCCCeEEEcCCCCC-c--cCCccc-CCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCC-CCC--CChhhh
Q 038338          121 ETIRKDPIAISLPQRNI-Q--ELPERL-QCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIH-FSS--LPSSLG  193 (421)
Q Consensus       121 ~~~~~~l~~l~l~~~~~-~--~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~--lp~~i~  193 (421)
                      ...++++++|.+.++.. .  ..-... .+++++.+++..|...+..........+++|++|++++|. +++  +-.-..
T Consensus       160 ~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~r  239 (483)
T KOG4341|consen  160 ASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQR  239 (483)
T ss_pred             hhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhc
Confidence            35688999998888763 1  122222 8899999999987652333333455678999999999984 333  333345


Q ss_pred             cccCCcEEEcccccCCCccccc----CcCCCCEEEeeCC-CCcc--cchhhcCCCCCCEEeccCCcCCcccchhhhc-CC
Q 038338          194 RLINLQTLCLDWCQLEDVAAIG----QLKKLEILNLADS-NIEQ--LPLEIGQLTGLRLLDLTNCWSLQVIAPNVIS-KL  265 (421)
Q Consensus       194 ~l~~L~~L~l~~~~~~~~~~~~----~l~~L~~L~l~~~-~l~~--lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~-~l  265 (421)
                      .+..++.+...+|.-...+.+.    ....+..+++..| .++.  +...-..+..|+.|+.++|...+..+...++ +.
T Consensus       240 G~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~  319 (483)
T KOG4341|consen  240 GCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHC  319 (483)
T ss_pred             cchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCC
Confidence            5666777766666532222221    2233444554455 2331  1111234666777777777665544333233 45


Q ss_pred             CCCcEEEcccCCCCCccccCCCCcChhhhcCCCCCCEEEEEecCccc---cC-CcccccCCceEEEEEcCCccchh----
Q 038338          266 SRLEELYMDNSFSGWEKVEGGSNASLVELKRLTKLTTLEIEVRDAEI---LL-PDFVSVELQRYRIRIGDKLEYEI----  337 (421)
Q Consensus       266 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~---~~-~~~~~~~L~~L~l~~~~~~~~~~----  337 (421)
                      .+|+.|-+..|..-..      ..+..-=.+.++|+.+++..+....   +- ....++.|+.+.++.|...+...    
T Consensus       320 ~~L~~l~l~~c~~fsd------~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l  393 (483)
T KOG4341|consen  320 HNLQVLELSGCQQFSD------RGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHL  393 (483)
T ss_pred             CceEEEeccccchhhh------hhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhh
Confidence            6777777766542110      0111112345566666666655321   11 11144666666665554443321    


Q ss_pred             hhhhchhhhceeEEEcCCcccccccchhHHHHhhhcccEEEeccccCcccccccccccCCCCCccEEEE
Q 038338          338 DQLLVKSEALRLMMLKGLEKVSILQENDGTKMLLQRTEDLWLVKLEGVQNVVHELDDGEGFPRLKHLHV  406 (421)
Q Consensus       338 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~i  406 (421)
                      ...-.....|..+.++++.. ........+... ++|+.+++-+|.....-+..-. .+++|+++....
T Consensus       394 ~~~~c~~~~l~~lEL~n~p~-i~d~~Le~l~~c-~~Leri~l~~~q~vtk~~i~~~-~~~lp~i~v~a~  459 (483)
T KOG4341|consen  394 SSSSCSLEGLEVLELDNCPL-ITDATLEHLSIC-RNLERIELIDCQDVTKEAISRF-ATHLPNIKVHAY  459 (483)
T ss_pred             hhccccccccceeeecCCCC-chHHHHHHHhhC-cccceeeeechhhhhhhhhHHH-HhhCccceehhh
Confidence            11223345666666766552 222223333343 6677777766666544433222 345666655443

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.18  E-value=2.7e-06  Score=52.73  Aligned_cols=37  Identities=35%  Similarity=0.468  Sum_probs=19.1

Q ss_pred             CccEEEccCCCCCCCChhhhcccCCcEEEcccccCCC
Q 038338          174 ELKVLSLIGIHFSSLPSSLGRLINLQTLCLDWCQLED  210 (421)
Q Consensus       174 ~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~  210 (421)
                      +|++|++++|.++++|+.++.+++|++|++++|.+++
T Consensus         2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~   38 (44)
T PF12799_consen    2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISD   38 (44)
T ss_dssp             T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSB
T ss_pred             cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCC
Confidence            4555555555555555555555555555555555444

...

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.13  E-value=1e-06  Score=88.51  Aligned_cols=134  Identities=18%  Similarity=0.177  Sum_probs=75.9

Q ss_pred             CCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCC--CChhhhcccCCcEEEcccccCCCcccccCcCCCCEEE
Q 038338          147 PNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSS--LPSSLGRLINLQTLCLDWCQLEDVAAIGQLKKLEILN  224 (421)
Q Consensus       147 ~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~  224 (421)
                      .+|+.|+++|........+..+...+|.|+.|.+.+-.+..  +..-..++++|+.||++++.++...++++|++|+.|.
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L~  201 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLKNLQVLS  201 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHhccccHHHHh
Confidence            46777777765542334444444556777777777655432  2233345667777777777776667777777777777


Q ss_pred             eeCCCCcccc--hhhcCCCCCCEEeccCCcCCccc--chh---hhcCCCCCcEEEcccCCCCC
Q 038338          225 LADSNIEQLP--LEIGQLTGLRLLDLTNCWSLQVI--APN---VISKLSRLEELYMDNSFSGW  280 (421)
Q Consensus       225 l~~~~l~~lp--~~~~~l~~L~~L~l~~~~~~~~~--~~~---~l~~l~~L~~L~l~~~~~~~  280 (421)
                      +.+=.+....  .++.+|++|+.||+|.......-  ...   .-..+++|+.||.+++.+..
T Consensus       202 mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~  264 (699)
T KOG3665|consen  202 MRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE  264 (699)
T ss_pred             ccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence            7665555222  34566777777777663322111  110   01246667777766654443

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.11  E-value=1.5e-07  Score=90.92  Aligned_cols=128  Identities=17%  Similarity=0.202  Sum_probs=58.2

Q ss_pred             CCCccEEEeeecCCCCccc-ChHHhccCCCccEEEccCCCCCCCChhhhcc-cCCcEEEcccccCCC--------ccccc
Q 038338          146 CPNLQLFLLFRQGYGPVQI-SDLFFEGTEELKVLSLIGIHFSSLPSSLGRL-INLQTLCLDWCQLED--------VAAIG  215 (421)
Q Consensus       146 ~~~L~~L~l~~~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l-~~L~~L~l~~~~~~~--------~~~~~  215 (421)
                      ++++++|.+-.... .+.. |..+ -.++.||+|.+.+|.+... .++..+ .+|+.|.. .++...        ...+.
T Consensus        83 lqkt~~lkl~~~pa-~~pt~pi~i-fpF~sLr~LElrg~~L~~~-~GL~~lr~qLe~LIC-~~Sl~Al~~v~ascggd~~  158 (1096)
T KOG1859|consen   83 LQKTKVLKLLPSPA-RDPTEPISI-FPFRSLRVLELRGCDLSTA-KGLQELRHQLEKLIC-HNSLDALRHVFASCGGDIS  158 (1096)
T ss_pred             HhhheeeeecccCC-CCCCCCcee-ccccceeeEEecCcchhhh-hhhHHHHHhhhhhhh-hccHHHHHHHHHHhccccc
Confidence            44555555544332 1111 4454 3578899999988877542 122222 22444322 212111        11111


Q ss_pred             C---cCCCCEEEeeCCCCcccchhhcCCCCCCEEeccCCcCCcccchhhhcCCCCCcEEEcccCCCCC
Q 038338          216 Q---LKKLEILNLADSNIEQLPLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNSFSGW  280 (421)
Q Consensus       216 ~---l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  280 (421)
                      +   +-.|...+.+.|.+..+...+.-++.|++|++++| .+..+..  +..++.|++||+++|.+..
T Consensus       159 ns~~Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshN-k~~~v~~--Lr~l~~LkhLDlsyN~L~~  223 (1096)
T KOG1859|consen  159 NSPVWNKLATASFSYNRLVLMDESLQLLPALESLNLSHN-KFTKVDN--LRRLPKLKHLDLSYNCLRH  223 (1096)
T ss_pred             cchhhhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchh-hhhhhHH--HHhcccccccccccchhcc
Confidence            1   22344445555555555445555555555555553 2222221  4455555555555554443

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.04  E-value=6.6e-07  Score=77.76  Aligned_cols=208  Identities=16%  Similarity=0.078  Sum_probs=128.7

Q ss_pred             ccEEEccCCCCCCC--Chhhh-cccCCcEEEcccccCCC----cccccCcCCCCEEEeeCCCCcccchhh-cCCCCCCEE
Q 038338          175 LKVLSLIGIHFSSL--PSSLG-RLINLQTLCLDWCQLED----VAAIGQLKKLEILNLADSNIEQLPLEI-GQLTGLRLL  246 (421)
Q Consensus       175 L~~L~l~~~~~~~l--p~~i~-~l~~L~~L~l~~~~~~~----~~~~~~l~~L~~L~l~~~~l~~lp~~~-~~l~~L~~L  246 (421)
                      +..|.+.++.+...  -..++ ...+++.+|+.+|.+++    ..-+.+++.|+.|+++.|.+..--... ..+.+|+.|
T Consensus        47 ~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~l  126 (418)
T KOG2982|consen   47 LELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVL  126 (418)
T ss_pred             hhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEE
Confidence            33566666666542  12233 36789999999999887    244567899999999998776222222 356788888


Q ss_pred             eccCCcCCcccchhhhcCCCCCcEEEcccCCCCCccccCCCCcChhhhcCCCCCCEEEEEecCcccc---CCcc-cccCC
Q 038338          247 DLTNCWSLQVIAPNVISKLSRLEELYMDNSFSGWEKVEGGSNASLVELKRLTKLTTLEIEVRDAEIL---LPDF-VSVEL  322 (421)
Q Consensus       247 ~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~---~~~~-~~~~L  322 (421)
                      -+.+.+....-....+..++.+++|.++.|.+.....+.   ...+.  --+.+++|+...|.....   .... .++++
T Consensus       127 VLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd---~c~e~--~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv  201 (418)
T KOG2982|consen  127 VLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDD---NCIED--WSTEVLTLHQLPCLEQLWLNKNKLSRIFPNV  201 (418)
T ss_pred             EEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhcccc---ccccc--cchhhhhhhcCCcHHHHHHHHHhHHhhcccc
Confidence            888765544444445677888888888887443221110   00011  113455555555543211   1111 34788


Q ss_pred             ceEEEEEcCCccchhhhhhchhhhceeEEEcCCcccccccchhHHHHhhhcccEEEeccccCccccc
Q 038338          323 QRYRIRIGDKLEYEIDQLLVKSEALRLMMLKGLEKVSILQENDGTKMLLQRTEDLWLVKLEGVQNVV  389 (421)
Q Consensus       323 ~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  389 (421)
                      ..+.+..+..-+...-.....+|.+--|+++.+.+ .+....+.+..+ |.|..|.+.+++.+..+-
T Consensus       202 ~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~i-dswasvD~Ln~f-~~l~dlRv~~~Pl~d~l~  266 (418)
T KOG2982|consen  202 NSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNI-DSWASVDALNGF-PQLVDLRVSENPLSDPLR  266 (418)
T ss_pred             hheeeecCcccchhhcccCCCCCcchhhhhccccc-ccHHHHHHHcCC-chhheeeccCCccccccc
Confidence            88888655444433445566778888888888774 344455556665 999999999998876553

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.02  E-value=9.1e-06  Score=50.37  Aligned_cols=33  Identities=39%  Similarity=0.644  Sum_probs=15.0

Q ss_pred             CCCEEEeeCCCCcccchhhcCCCCCCEEeccCC
Q 038338          219 KLEILNLADSNIEQLPLEIGQLTGLRLLDLTNC  251 (421)
Q Consensus       219 ~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~  251 (421)
                      +|++|++++|+++.+|+.+++|++|++|++++|
T Consensus         2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N   34 (44)
T PF12799_consen    2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNN   34 (44)
T ss_dssp             T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSS
T ss_pred             cceEEEccCCCCcccCchHhCCCCCCEEEecCC
Confidence            344444444444444444444555555554443

...

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.99  E-value=2.5e-05  Score=72.74  Aligned_cols=54  Identities=26%  Similarity=0.383  Sum_probs=27.0

Q ss_pred             cCCCCEEEeeCCCCcccchhhcCCCCCCEEeccCCcCCcccchhhhcCCCCCcEEEcccC
Q 038338          217 LKKLEILNLADSNIEQLPLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNS  276 (421)
Q Consensus       217 l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~  276 (421)
                      +.+++.|++++|.++.+|.   -..+|++|.+++|..+..+|.. +  ..+|+.|.+++|
T Consensus        51 ~~~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~-L--P~nLe~L~Ls~C  104 (426)
T PRK15386         51 ARASGRLYIKDCDIESLPV---LPNELTEITIENCNNLTTLPGS-I--PEGLEKLTVCHC  104 (426)
T ss_pred             hcCCCEEEeCCCCCcccCC---CCCCCcEEEccCCCCcccCCch-h--hhhhhheEccCc
Confidence            4555555555555555551   2234555555555555444432 2  235555555554

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.97  E-value=5.5e-07  Score=69.21  Aligned_cols=109  Identities=17%  Similarity=0.242  Sum_probs=62.8

Q ss_pred             CCeEEEcCCCCCccCC----cccCCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCCChhhhcccCCcEE
Q 038338          126 DPIAISLPQRNIQELP----ERLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPSSLGRLINLQTL  201 (421)
Q Consensus       126 ~l~~l~l~~~~~~~l~----~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L  201 (421)
                      ....++++.|.+..++    ..+...+|+..++++|.+  .++|..+-.+++.+..|++++|.+.++|..+..++.|+.|
T Consensus        28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~f--k~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~l  105 (177)
T KOG4579|consen   28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGF--KKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSL  105 (177)
T ss_pred             HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchh--hhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhc
Confidence            3444556666553333    222445555666666653  5555555555556666666666666666666666666666


Q ss_pred             EcccccCCC-cccccCcCCCCEEEeeCCCCcccchh
Q 038338          202 CLDWCQLED-VAAIGQLKKLEILNLADSNIEQLPLE  236 (421)
Q Consensus       202 ~l~~~~~~~-~~~~~~l~~L~~L~l~~~~l~~lp~~  236 (421)
                      +++.|.+.. |..+..+.++-.|+..++.+..+|-+
T Consensus       106 Nl~~N~l~~~p~vi~~L~~l~~Lds~~na~~eid~d  141 (177)
T KOG4579|consen  106 NLRFNPLNAEPRVIAPLIKLDMLDSPENARAEIDVD  141 (177)
T ss_pred             ccccCccccchHHHHHHHhHHHhcCCCCccccCcHH
Confidence            666666555 65555566666666666655555544

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.88  E-value=1.4e-06  Score=66.97  Aligned_cols=112  Identities=21%  Similarity=0.197  Sum_probs=81.1

Q ss_pred             CCccEEEeeecCCC-CcccChHHhccCCCccEEEccCCCCCCCChhhhc-ccCCcEEEcccccCCC-cccccCcCCCCEE
Q 038338          147 PNLQLFLLFRQGYG-PVQISDLFFEGTEELKVLSLIGIHFSSLPSSLGR-LINLQTLCLDWCQLED-VAAIGQLKKLEIL  223 (421)
Q Consensus       147 ~~L~~L~l~~~~~~-~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~-l~~L~~L~l~~~~~~~-~~~~~~l~~L~~L  223 (421)
                      ..+..++++.|... ..+.+..+ .+..+|...++++|.++++|+.+.. .+..++|++.+|.+.+ |..+..++.|+.|
T Consensus        27 kE~h~ldLssc~lm~i~davy~l-~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~l  105 (177)
T KOG4579|consen   27 KELHFLDLSSCQLMYIADAVYML-SKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSL  105 (177)
T ss_pred             HHhhhcccccchhhHHHHHHHHH-hCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhc
Confidence            34555666666541 12223333 5567788888999988888877655 4578888888888888 8888888888999


Q ss_pred             EeeCCCCcccchhhcCCCCCCEEeccCCcCCcccchh
Q 038338          224 NLADSNIEQLPLEIGQLTGLRLLDLTNCWSLQVIAPN  260 (421)
Q Consensus       224 ~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~  260 (421)
                      +++.|.+...|.-+..+.+|..|+..++ ....++..
T Consensus       106 Nl~~N~l~~~p~vi~~L~~l~~Lds~~n-a~~eid~d  141 (177)
T KOG4579|consen  106 NLRFNPLNAEPRVIAPLIKLDMLDSPEN-ARAEIDVD  141 (177)
T ss_pred             ccccCccccchHHHHHHHhHHHhcCCCC-ccccCcHH
Confidence            9888888888888888888888887774 34455543

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.69  E-value=8.1e-05  Score=61.45  Aligned_cols=81  Identities=26%  Similarity=0.325  Sum_probs=38.7

Q ss_pred             ccCCCccEEEccCCCCCCCChhhhc-ccCCcEEEcccccCCC---cccccCcCCCCEEEeeCCCCcccch----hhcCCC
Q 038338          170 EGTEELKVLSLIGIHFSSLPSSLGR-LINLQTLCLDWCQLED---VAAIGQLKKLEILNLADSNIEQLPL----EIGQLT  241 (421)
Q Consensus       170 ~~l~~L~~L~l~~~~~~~lp~~i~~-l~~L~~L~l~~~~~~~---~~~~~~l~~L~~L~l~~~~l~~lp~----~~~~l~  241 (421)
                      ..++.|..|.+.+|.++.+.+.+.. +++|..|.+.+|++..   ...+..++.|++|.+-+|.+++-+.    -+..++
T Consensus        61 p~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp  140 (233)
T KOG1644|consen   61 PHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLP  140 (233)
T ss_pred             CCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecC
Confidence            3445555555555555544333333 3345555555555443   3444455555555555555443222    134455


Q ss_pred             CCCEEeccC
Q 038338          242 GLRLLDLTN  250 (421)
Q Consensus       242 ~L~~L~l~~  250 (421)
                      +|+.||+..
T Consensus       141 ~l~~LDF~k  149 (233)
T KOG1644|consen  141 SLRTLDFQK  149 (233)
T ss_pred             cceEeehhh
Confidence            555555543

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.67  E-value=0.00016  Score=67.48  Aligned_cols=73  Identities=16%  Similarity=0.177  Sum_probs=48.4

Q ss_pred             ccCCCeEEEcCCCCCccCCcccCCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCC-CCCCCChhhhcccCCcEE
Q 038338          123 IRKDPIAISLPQRNIQELPERLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGI-HFSSLPSSLGRLINLQTL  201 (421)
Q Consensus       123 ~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~-~~~~lp~~i~~l~~L~~L  201 (421)
                      .+.++++|++++|.+..+|..  -++|+.|.+.++.. ...+|..+   ..+|++|++++| .+..+|.+      |+.|
T Consensus        50 ~~~~l~~L~Is~c~L~sLP~L--P~sLtsL~Lsnc~n-LtsLP~~L---P~nLe~L~Ls~Cs~L~sLP~s------Le~L  117 (426)
T PRK15386         50 EARASGRLYIKDCDIESLPVL--PNELTEITIENCNN-LTTLPGSI---PEGLEKLTVCHCPEISGLPES------VRSL  117 (426)
T ss_pred             HhcCCCEEEeCCCCCcccCCC--CCCCcEEEccCCCC-cccCCchh---hhhhhheEccCcccccccccc------cceE
Confidence            346777888888877777731  23688888887655 45556544   357888888887 56666653      5556


Q ss_pred             Eccccc
Q 038338          202 CLDWCQ  207 (421)
Q Consensus       202 ~l~~~~  207 (421)
                      ++..+.
T Consensus       118 ~L~~n~  123 (426)
T PRK15386        118 EIKGSA  123 (426)
T ss_pred             EeCCCC
Confidence            665543

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.57  E-value=0.00014  Score=60.04  Aligned_cols=102  Identities=22%  Similarity=0.203  Sum_probs=83.9

Q ss_pred             CCCeEEEcCCCCCccCCcccCCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCCC--hhhhcccCCcEEE
Q 038338          125 KDPIAISLPQRNIQELPERLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLP--SSLGRLINLQTLC  202 (421)
Q Consensus       125 ~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp--~~i~~l~~L~~L~  202 (421)
                      .+...+++.+|++..++.+..+++|.+|.+.+|.+  ..+...+-..+++|..|.+.+|++..+.  ..+..++.|++|.
T Consensus        42 d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrI--t~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt  119 (233)
T KOG1644|consen   42 DQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRI--TRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT  119 (233)
T ss_pred             cccceecccccchhhcccCCCccccceEEecCCcc--eeeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence            45677899999998888888999999999999986  5566555566889999999999987642  2367789999999


Q ss_pred             cccccCCC-----cccccCcCCCCEEEeeCC
Q 038338          203 LDWCQLED-----VAAIGQLKKLEILNLADS  228 (421)
Q Consensus       203 l~~~~~~~-----~~~~~~l~~L~~L~l~~~  228 (421)
                      +-+|.++.     ..-+.++++|+.||+.+-
T Consensus       120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~kV  150 (233)
T KOG1644|consen  120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV  150 (233)
T ss_pred             ecCCchhcccCceeEEEEecCcceEeehhhh
Confidence            99998776     357889999999999874

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.45  E-value=0.00023  Score=61.50  Aligned_cols=142  Identities=14%  Similarity=0.043  Sum_probs=77.0

Q ss_pred             cCCCCCcEEEcccCCCCCccccCCCCcChhhhcCCCCCCEEEEEecCcc--ccCCc-----ccccCCceEEEEEcCCccc
Q 038338          263 SKLSRLEELYMDNSFSGWEKVEGGSNASLVELKRLTKLTTLEIEVRDAE--ILLPD-----FVSVELQRYRIRIGDKLEY  335 (421)
Q Consensus       263 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~--~~~~~-----~~~~~L~~L~l~~~~~~~~  335 (421)
                      ..-+.|++.....|.+..-+.    .-....+....+|+.+.+..|.+.  ++...     ..+.+|+.|++..+ .++.
T Consensus       154 a~kp~Le~vicgrNRlengs~----~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDN-tft~  228 (388)
T COG5238         154 ADKPKLEVVICGRNRLENGSK----ELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDN-TFTL  228 (388)
T ss_pred             ccCCCceEEEeccchhccCcH----HHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeecccc-chhh
Confidence            355667777766665543222    111233444467888888888764  22111     14488888888633 2221


Q ss_pred             h----hhhhhchhhhceeEEEcCCccccccc--chhHHHH-hhhcccEEEeccccCcccccc-----cccccCCCCCccE
Q 038338          336 E----IDQLLVKSEALRLMMLKGLEKVSILQ--ENDGTKM-LLQRTEDLWLVKLEGVQNVVH-----ELDDGEGFPRLKH  403 (421)
Q Consensus       336 ~----~~~~~~~l~~L~~L~l~~~~~~~~~~--~~~~~~~-~~~~L~~L~l~~~~~~~~~~~-----~~~~~~~~~~L~~  403 (421)
                      .    +...+..-+.|+.|.+.+|-+...+.  ....+.. .+|+|..|....+..-..+..     .+. -.++|-|..
T Consensus       229 ~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e-~~~~p~L~~  307 (388)
T COG5238         229 EGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFE-QDAVPLLVD  307 (388)
T ss_pred             hhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhh-hcccHHHHH
Confidence            1    12223333668888888876433221  1122222 248888888877765433221     122 346788887


Q ss_pred             EEEeecC
Q 038338          404 LHVESCY  410 (421)
Q Consensus       404 L~i~~c~  410 (421)
                      |.+.+++
T Consensus       308 le~ngNr  314 (388)
T COG5238         308 LERNGNR  314 (388)
T ss_pred             HHHccCc
Confidence            7777763

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.45  E-value=7.5e-06  Score=70.67  Aligned_cols=100  Identities=24%  Similarity=0.264  Sum_probs=66.0

Q ss_pred             CCCccEEEccCCCCCCCChhhhcccCCcEEEcccccCCCcccccCcCCCCEEEeeCCCCcccch--hhcCCCCCCEEecc
Q 038338          172 TEELKVLSLIGIHFSSLPSSLGRLINLQTLCLDWCQLEDVAAIGQLKKLEILNLADSNIEQLPL--EIGQLTGLRLLDLT  249 (421)
Q Consensus       172 l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~--~~~~l~~L~~L~l~  249 (421)
                      +.+.+.|+.-+|.+.++.- ..+|+.|++|.++-|+|+....+..+++|++|+|..|.|..+.+  .+.++++|+.|.+.
T Consensus        18 l~~vkKLNcwg~~L~DIsi-c~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~   96 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDISI-CEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLD   96 (388)
T ss_pred             HHHhhhhcccCCCccHHHH-HHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhc
Confidence            4555666666776665422 35577777777777777776667777777777777777765532  35677777777777


Q ss_pred             CCcCCcccchh----hhcCCCCCcEEE
Q 038338          250 NCWSLQVIAPN----VISKLSRLEELY  272 (421)
Q Consensus       250 ~~~~~~~~~~~----~l~~l~~L~~L~  272 (421)
                      .|...+..+..    .+.-+++|++|+
T Consensus        97 ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   97 ENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             cCCcccccchhHHHHHHHHcccchhcc
Confidence            76665554432    355677777776

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.23  E-value=0.00065  Score=58.83  Aligned_cols=217  Identities=20%  Similarity=0.102  Sum_probs=123.6

Q ss_pred             cCCCccEEEccCCCCCC-----CChhhhcccCCcEEEcccccCC---C--c-------ccccCcCCCCEEEeeCCCCc-c
Q 038338          171 GTEELKVLSLIGIHFSS-----LPSSLGRLINLQTLCLDWCQLE---D--V-------AAIGQLKKLEILNLADSNIE-Q  232 (421)
Q Consensus       171 ~l~~L~~L~l~~~~~~~-----lp~~i~~l~~L~~L~l~~~~~~---~--~-------~~~~~l~~L~~L~l~~~~l~-~  232 (421)
                      .+..+..+++++|.+..     +...|.+-.+|+..+++.--..   +  +       +.+-++++|+..+++.|.+. .
T Consensus        28 ~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~  107 (388)
T COG5238          28 MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE  107 (388)
T ss_pred             hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence            36778888888887753     4445566667777776653211   1  2       33445566666666666544 3


Q ss_pred             cchh----hcCCCCCCEEeccCCcCCcccchhhhcCCCCCcEEEcccCCCCCccccCCCCcChhhhcCCCCCCEEEEEec
Q 038338          233 LPLE----IGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNSFSGWEKVEGGSNASLVELKRLTKLTTLEIEVR  308 (421)
Q Consensus       233 lp~~----~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~  308 (421)
                      .|+.    +..-+.|.||.+++|. ++.+..+.++  +.|++|.                 ..+.....+.|+......|
T Consensus       108 ~~e~L~d~is~~t~l~HL~l~NnG-lGp~aG~rig--kal~~la-----------------~nKKaa~kp~Le~vicgrN  167 (388)
T COG5238         108 FPEELGDLISSSTDLVHLKLNNNG-LGPIAGGRIG--KALFHLA-----------------YNKKAADKPKLEVVICGRN  167 (388)
T ss_pred             cchHHHHHHhcCCCceeEEeecCC-CCccchhHHH--HHHHHHH-----------------HHhhhccCCCceEEEeccc
Confidence            3332    3344556666665542 2222222121  1122221                 1133456688999999888


Q ss_pred             CccccCCcc-----cc-cCCceEEEEEcCCccch----hhhhhchhhhceeEEEcCCcccccccchhHHHHhh---hccc
Q 038338          309 DAEILLPDF-----VS-VELQRYRIRIGDKLEYE----IDQLLVKSEALRLMMLKGLEKVSILQENDGTKMLL---QRTE  375 (421)
Q Consensus       309 ~~~~~~~~~-----~~-~~L~~L~l~~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~---~~L~  375 (421)
                      .+...+...     .+ .+|+.+.+..++.....    ....+..+.+|+.|++.+|-+....  ...++..+   +.|+
T Consensus       168 Rlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~g--S~~La~al~~W~~lr  245 (388)
T COG5238         168 RLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEG--SRYLADALCEWNLLR  245 (388)
T ss_pred             hhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhh--HHHHHHHhcccchhh
Confidence            886655443     22 58889998755433321    2234667899999999997643222  22222221   6789


Q ss_pred             EEEeccccCccc----ccccccccCCCCCccEEEEeecC
Q 038338          376 DLWLVKLEGVQN----VVHELDDGEGFPRLKHLHVESCY  410 (421)
Q Consensus       376 ~L~l~~~~~~~~----~~~~~~~~~~~~~L~~L~i~~c~  410 (421)
                      .|.+.+|-.-..    +...+. ...+|+|..|...++.
T Consensus       246 EL~lnDClls~~G~~~v~~~f~-e~~~p~l~~L~~~Yne  283 (388)
T COG5238         246 ELRLNDCLLSNEGVKSVLRRFN-EKFVPNLMPLPGDYNE  283 (388)
T ss_pred             hccccchhhccccHHHHHHHhh-hhcCCCccccccchhh
Confidence            999998865422    222222 3467999988887764

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.16  E-value=4.4e-05  Score=74.99  Aligned_cols=127  Identities=25%  Similarity=0.311  Sum_probs=63.6

Q ss_pred             CCCCccEEEeeecCCCCccc-ChHHhccCCCccEEEccCC-CC-CC----CChhhhcccCCcEEEccccc-CCC--cccc
Q 038338          145 QCPNLQLFLLFRQGYGPVQI-SDLFFEGTEELKVLSLIGI-HF-SS----LPSSLGRLINLQTLCLDWCQ-LED--VAAI  214 (421)
Q Consensus       145 ~~~~L~~L~l~~~~~~~~~~-~~~~~~~l~~L~~L~l~~~-~~-~~----lp~~i~~l~~L~~L~l~~~~-~~~--~~~~  214 (421)
                      .++.++.+.+.++.. .... ...+...+++|+.|+++++ .. ..    .......+.+|+.|+++++. +++  ...+
T Consensus       186 ~~~~L~~l~l~~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l  264 (482)
T KOG1947|consen  186 SCPLLKRLSLSGCSK-ITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSAL  264 (482)
T ss_pred             hCchhhHhhhccccc-CChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHH
Confidence            356666666666543 2221 1233355667777777652 11 11    11223345666667776666 444  3333


Q ss_pred             cC-cCCCCEEEeeCCC-Cc--ccchhhcCCCCCCEEeccCCcCCcc--cchhhhcCCCCCcEEEc
Q 038338          215 GQ-LKKLEILNLADSN-IE--QLPLEIGQLTGLRLLDLTNCWSLQV--IAPNVISKLSRLEELYM  273 (421)
Q Consensus       215 ~~-l~~L~~L~l~~~~-l~--~lp~~~~~l~~L~~L~l~~~~~~~~--~~~~~l~~l~~L~~L~l  273 (421)
                      .. +++|++|.+.+|. ++  .+-.....+++|++|+++.|..+..  +... ..++++|+.|.+
T Consensus       265 ~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~-~~~c~~l~~l~~  328 (482)
T KOG1947|consen  265 ASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEAL-LKNCPNLRELKL  328 (482)
T ss_pred             HhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHH-HHhCcchhhhhh
Confidence            32 5667777666554 44  3333344566677777766655422  2221 334555555443

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.93  E-value=0.0005  Score=59.23  Aligned_cols=80  Identities=25%  Similarity=0.282  Sum_probs=43.1

Q ss_pred             cCCCccEEEccCC--CCC-CCChhhhcccCCcEEEcccccCCC---cccccCcCCCCEEEeeCCCCcccch----hhcCC
Q 038338          171 GTEELKVLSLIGI--HFS-SLPSSLGRLINLQTLCLDWCQLED---VAAIGQLKKLEILNLADSNIEQLPL----EIGQL  240 (421)
Q Consensus       171 ~l~~L~~L~l~~~--~~~-~lp~~i~~l~~L~~L~l~~~~~~~---~~~~~~l~~L~~L~l~~~~l~~lp~----~~~~l  240 (421)
                      .+++|++|.++.|  .+. .++.....+++|++|+++.|.+..   ...+..+.+|..|++.+|....+-.    -+.-+
T Consensus        63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll  142 (260)
T KOG2739|consen   63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLLL  142 (260)
T ss_pred             CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHHHHh
Confidence            4566666666666  322 244444455666666666666553   3444555666666666665554321    13345


Q ss_pred             CCCCEEeccC
Q 038338          241 TGLRLLDLTN  250 (421)
Q Consensus       241 ~~L~~L~l~~  250 (421)
                      ++|.+|+-..
T Consensus       143 ~~L~~LD~~d  152 (260)
T KOG2739|consen  143 PSLKYLDGCD  152 (260)
T ss_pred             hhhccccccc
Confidence            5555555444

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.91  E-value=6.8e-05  Score=64.93  Aligned_cols=105  Identities=26%  Similarity=0.367  Sum_probs=78.6

Q ss_pred             ccCCcEEEcccccCCCcccccCcCCCCEEEeeCCCCcccchhhcCCCCCCEEeccCCcCCcccch-hhhcCCCCCcEEEc
Q 038338          195 LINLQTLCLDWCQLEDVAAIGQLKKLEILNLADSNIEQLPLEIGQLTGLRLLDLTNCWSLQVIAP-NVISKLSRLEELYM  273 (421)
Q Consensus       195 l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~-~~l~~l~~L~~L~l  273 (421)
                      +.+.+.|+.-+|.+.+..-..+++.|+.|.|+-|+|+.+. .+..+++|++|++..|. +..+.. ..+.++++|+.|++
T Consensus        18 l~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~-I~sldEL~YLknlpsLr~LWL   95 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNC-IESLDELEYLKNLPSLRTLWL   95 (388)
T ss_pred             HHHhhhhcccCCCccHHHHHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhcc-cccHHHHHHHhcCchhhhHhh
Confidence            5567788888988888888889999999999999999884 48899999999998853 333322 34789999999999


Q ss_pred             ccCCCCCccccCCCCcChhhhcCCCCCCEEE
Q 038338          274 DNSFSGWEKVEGGSNASLVELKRLTKLTTLE  304 (421)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~  304 (421)
                      ..|.....   .+.+-....+.-+++|++|+
T Consensus        96 ~ENPCc~~---ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   96 DENPCCGE---AGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             ccCCcccc---cchhHHHHHHHHcccchhcc
Confidence            88744322   12233345577778888776

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.65  E-value=0.00023  Score=69.98  Aligned_cols=133  Identities=22%  Similarity=0.273  Sum_probs=80.6

Q ss_pred             HHhccCCCccEEEccCCC-CCC--CChhhhcccCCcEEEcccc-c-CCC-----cccccCcCCCCEEEeeCCC-Cccc-c
Q 038338          167 LFFEGTEELKVLSLIGIH-FSS--LPSSLGRLINLQTLCLDWC-Q-LED-----VAAIGQLKKLEILNLADSN-IEQL-P  234 (421)
Q Consensus       167 ~~~~~l~~L~~L~l~~~~-~~~--lp~~i~~l~~L~~L~l~~~-~-~~~-----~~~~~~l~~L~~L~l~~~~-l~~l-p  234 (421)
                      .+...++.|+.|.+.++. +..  +-+....+++|+.|+++++ . +..     ......+.+|+.|+++++. ++.. -
T Consensus       182 ~l~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l  261 (482)
T KOG1947|consen  182 RLLSSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGL  261 (482)
T ss_pred             HHHhhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhH
Confidence            334457888888888873 343  3445677888999999873 2 111     2334456888899998886 5521 1


Q ss_pred             hhh-cCCCCCCEEeccCCcCCccc-chhhhcCCCCCcEEEcccCCCCCccccCCCCcChhhhcCCCCCCEEEE
Q 038338          235 LEI-GQLTGLRLLDLTNCWSLQVI-APNVISKLSRLEELYMDNSFSGWEKVEGGSNASLVELKRLTKLTTLEI  305 (421)
Q Consensus       235 ~~~-~~l~~L~~L~l~~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l  305 (421)
                      ..+ ..+++|++|.+.+|..+... -..+...+++|++|+++++.....      ........++++++.|.+
T Consensus       262 ~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d------~~l~~~~~~c~~l~~l~~  328 (482)
T KOG1947|consen  262 SALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTD------SGLEALLKNCPNLRELKL  328 (482)
T ss_pred             HHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchH------HHHHHHHHhCcchhhhhh
Confidence            222 34788999988877643322 222345678899999887654311      112233445666666544

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.54  E-value=0.0014  Score=56.51  Aligned_cols=112  Identities=24%  Similarity=0.224  Sum_probs=82.3

Q ss_pred             CccCCCeEEEcCCCCCccCCcccCCCCccEEEeeec--CCCCcccChHHhccCCCccEEEccCCCCCC---CChhhhccc
Q 038338          122 TIRKDPIAISLPQRNIQELPERLQCPNLQLFLLFRQ--GYGPVQISDLFFEGTEELKVLSLIGIHFSS---LPSSLGRLI  196 (421)
Q Consensus       122 ~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~--~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~---lp~~i~~l~  196 (421)
                      .....++.+++.+..+.++.....+++|+.|.++.|  .. ...+.... .++++|++|++++|.+..   +++ ...+.
T Consensus        40 d~~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~-~~~l~vl~-e~~P~l~~l~ls~Nki~~lstl~p-l~~l~  116 (260)
T KOG2739|consen   40 DEFVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRV-SGGLEVLA-EKAPNLKVLNLSGNKIKDLSTLRP-LKELE  116 (260)
T ss_pred             ccccchhhhhhhccceeecccCCCcchhhhhcccCCcccc-cccceehh-hhCCceeEEeecCCccccccccch-hhhhc
Confidence            345577778888877777777778999999999999  43 34444433 567999999999998764   333 67788


Q ss_pred             CCcEEEcccccCCC-----cccccCcCCCCEEEeeCCCCcccchh
Q 038338          197 NLQTLCLDWCQLED-----VAAIGQLKKLEILNLADSNIEQLPLE  236 (421)
Q Consensus       197 ~L~~L~l~~~~~~~-----~~~~~~l~~L~~L~l~~~~l~~lp~~  236 (421)
                      +|..|++..|..+.     -..+.-+++|++|+-....-...|..
T Consensus       117 nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv~~~Ea~~~  161 (260)
T KOG2739|consen  117 NLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDVDGEEAPEA  161 (260)
T ss_pred             chhhhhcccCCccccccHHHHHHHHhhhhccccccccCCcccccc
Confidence            89999999988655     24556679999998877655555543

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.08  E-value=0.00046  Score=57.12  Aligned_cols=78  Identities=13%  Similarity=-0.042  Sum_probs=52.1

Q ss_pred             hhhhhhchhhhceeEEEcCCcccccccchhHHHHhhhcccEEEeccccCcccccccccccCCCCCccEEEEeecCceeee
Q 038338          336 EIDQLLVKSEALRLMMLKGLEKVSILQENDGTKMLLQRTEDLWLVKLEGVQNVVHELDDGEGFPRLKHLHVESCYEIVHI  415 (421)
Q Consensus       336 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~i~~c~~L~~l  415 (421)
                      +....+.+++.++.|.+.+|. .-.....+.+++++++|+.|+|+.|+.+++-...-  ...|++|+.|.|.+.+.....
T Consensus       116 eGle~L~~l~~i~~l~l~~ck-~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~--L~~lknLr~L~l~~l~~v~~~  192 (221)
T KOG3864|consen  116 EGLEHLRDLRSIKSLSLANCK-YFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLAC--LLKLKNLRRLHLYDLPYVANL  192 (221)
T ss_pred             HHHHHHhccchhhhheecccc-chhhHHHHHhcccccchheeeccCCCeechhHHHH--HHHhhhhHHHHhcCchhhhch
Confidence            444557777778888887776 33344455566677888888888888776553211  337888888888877766554


Q ss_pred             c
Q 038338          416 V  416 (421)
Q Consensus       416 ~  416 (421)
                      -
T Consensus       193 e  193 (221)
T KOG3864|consen  193 E  193 (221)
T ss_pred             H
Confidence            3

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.06  E-value=0.0027  Score=32.63  Aligned_cols=21  Identities=29%  Similarity=0.593  Sum_probs=12.8

Q ss_pred             CCCEEEeeCCCCcccchhhcC
Q 038338          219 KLEILNLADSNIEQLPLEIGQ  239 (421)
Q Consensus       219 ~L~~L~l~~~~l~~lp~~~~~  239 (421)
                      +|++|++++|+++.+|.++++
T Consensus         1 ~L~~Ldls~n~l~~ip~~~~~   21 (22)
T PF00560_consen    1 NLEYLDLSGNNLTSIPSSFSN   21 (22)
T ss_dssp             TESEEEETSSEESEEGTTTTT
T ss_pred             CccEEECCCCcCEeCChhhcC
Confidence            356666666666666665443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=95.87  E-value=0.027  Score=44.18  Aligned_cols=19  Identities=21%  Similarity=0.330  Sum_probs=6.9

Q ss_pred             cChHHhccCCCccEEEccC
Q 038338          164 ISDLFFEGTEELKVLSLIG  182 (421)
Q Consensus       164 ~~~~~~~~l~~L~~L~l~~  182 (421)
                      +....|..+++|+.+.+..
T Consensus        26 I~~~~F~~~~~l~~i~~~~   44 (129)
T PF13306_consen   26 IGENAFSNCTSLKSINFPN   44 (129)
T ss_dssp             E-TTTTTT-TT-SEEEESS
T ss_pred             eChhhcccccccccccccc
Confidence            3333344444444444443

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=95.77  E-value=0.039  Score=43.23  Aligned_cols=105  Identities=15%  Similarity=0.271  Sum_probs=57.7

Q ss_pred             ChHHhccCCCccEEEccCCCCCCCCh-hhhcccCCcEEEcccccCCC--cccccCcCCCCEEEeeCCCCcccchh-hcCC
Q 038338          165 SDLFFEGTEELKVLSLIGIHFSSLPS-SLGRLINLQTLCLDWCQLED--VAAIGQLKKLEILNLADSNIEQLPLE-IGQL  240 (421)
Q Consensus       165 ~~~~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l  240 (421)
                      +...|.++++|+.+.+.. .+..++. .+..+.+|+.+.+..+ +..  ...+.++++++.+.+.. .+..++.. +..+
T Consensus         4 ~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~   80 (129)
T PF13306_consen    4 GNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNC   80 (129)
T ss_dssp             -TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-
T ss_pred             CHHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccc
Confidence            444567778888888875 4555543 4667778888888774 555  45677777888888865 55555443 5568


Q ss_pred             CCCCEEeccCCcCCcccchhhhcCCCCCcEEEccc
Q 038338          241 TGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDN  275 (421)
Q Consensus       241 ~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~  275 (421)
                      ++|+.+.+..+  +..++...+... +|+.+.+..
T Consensus        81 ~~l~~i~~~~~--~~~i~~~~f~~~-~l~~i~~~~  112 (129)
T PF13306_consen   81 TNLKNIDIPSN--ITEIGSSSFSNC-NLKEINIPS  112 (129)
T ss_dssp             TTECEEEETTT---BEEHTTTTTT--T--EEE-TT
T ss_pred             ccccccccCcc--ccEEchhhhcCC-CceEEEECC
Confidence            88888888652  455665556666 777777654

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.69  E-value=0.0041  Score=31.91  Aligned_cols=21  Identities=38%  Similarity=0.634  Sum_probs=13.1

Q ss_pred             CccEEEccCCCCCCCChhhhc
Q 038338          174 ELKVLSLIGIHFSSLPSSLGR  194 (421)
Q Consensus       174 ~L~~L~l~~~~~~~lp~~i~~  194 (421)
                      +|++|++++|.++.+|++++.
T Consensus         1 ~L~~Ldls~n~l~~ip~~~~~   21 (22)
T PF00560_consen    1 NLEYLDLSGNNLTSIPSSFSN   21 (22)
T ss_dssp             TESEEEETSSEESEEGTTTTT
T ss_pred             CccEEECCCCcCEeCChhhcC
Confidence            366677777766666665543

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=94.83  E-value=0.02  Score=27.20  Aligned_cols=16  Identities=31%  Similarity=0.704  Sum_probs=7.1

Q ss_pred             CCCEEEeeCCCCcccc
Q 038338          219 KLEILNLADSNIEQLP  234 (421)
Q Consensus       219 ~L~~L~l~~~~l~~lp  234 (421)
                      +|+.|++++|+++.+|
T Consensus         2 ~L~~L~l~~n~L~~lP   17 (17)
T PF13504_consen    2 NLRTLDLSNNRLTSLP   17 (17)
T ss_dssp             T-SEEEETSS--SSE-
T ss_pred             ccCEEECCCCCCCCCc
Confidence            4566666666655544

...

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=94.28  E-value=0.031  Score=26.55  Aligned_cols=16  Identities=38%  Similarity=0.621  Sum_probs=7.3

Q ss_pred             CccEEEccCCCCCCCC
Q 038338          174 ELKVLSLIGIHFSSLP  189 (421)
Q Consensus       174 ~L~~L~l~~~~~~~lp  189 (421)
                      +|++|++++|.++.+|
T Consensus         2 ~L~~L~l~~n~L~~lP   17 (17)
T PF13504_consen    2 NLRTLDLSNNRLTSLP   17 (17)
T ss_dssp             T-SEEEETSS--SSE-
T ss_pred             ccCEEECCCCCCCCCc
Confidence            4666666666655543

...

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.33  E-value=0.034  Score=46.33  Aligned_cols=66  Identities=15%  Similarity=0.147  Sum_probs=50.3

Q ss_pred             hhceeEEEcCCcccccccchhHHHHhhhcccEEEeccccCcccccccccccCCCCCccEEEEeecCceee
Q 038338          345 EALRLMMLKGLEKVSILQENDGTKMLLQRTEDLWLVKLEGVQNVVHELDDGEGFPRLKHLHVESCYEIVH  414 (421)
Q Consensus       345 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~i~~c~~L~~  414 (421)
                      ..++.++-+++.++  ....+.+.++ +.++.|.+.+|....++..+.. .+..|+|+.|+|++||.+.+
T Consensus       101 ~~IeaVDAsds~I~--~eGle~L~~l-~~i~~l~l~~ck~~dD~~L~~l-~~~~~~L~~L~lsgC~rIT~  166 (221)
T KOG3864|consen  101 VKIEAVDASDSSIM--YEGLEHLRDL-RSIKSLSLANCKYFDDWCLERL-GGLAPSLQDLDLSGCPRITD  166 (221)
T ss_pred             ceEEEEecCCchHH--HHHHHHHhcc-chhhhheeccccchhhHHHHHh-cccccchheeeccCCCeech
Confidence            45777777776632  2234456666 9999999999999988875554 55889999999999999864

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=91.95  E-value=0.14  Score=27.29  Aligned_cols=21  Identities=29%  Similarity=0.507  Sum_probs=14.9

Q ss_pred             cCCCCEEEeeCCCCcccchhh
Q 038338          217 LKKLEILNLADSNIEQLPLEI  237 (421)
Q Consensus       217 l~~L~~L~l~~~~l~~lp~~~  237 (421)
                      +++|++|++++|+++.+|.++
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~   21 (26)
T smart00369        1 LPNLRELDLSNNQLSSLPPGA   21 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHH
Confidence            456777777777777777654

>smart00370 LRR Leucine-rich repeats, outliers

Probab=91.95  E-value=0.14  Score=27.29  Aligned_cols=21  Identities=29%  Similarity=0.507  Sum_probs=14.9

Q ss_pred             cCCCCEEEeeCCCCcccchhh
Q 038338          217 LKKLEILNLADSNIEQLPLEI  237 (421)
Q Consensus       217 l~~L~~L~l~~~~l~~lp~~~  237 (421)
                      +++|++|++++|+++.+|.++
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~   21 (26)
T smart00370        1 LPNLRELDLSNNQLSSLPPGA   21 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHH
Confidence            456777777777777777654

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=89.49  E-value=0.011  Score=50.38  Aligned_cols=85  Identities=9%  Similarity=-0.018  Sum_probs=61.9

Q ss_pred             cCCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCCChhhhcccCCcEEEcccccCCC-cccccCcCCCCE
Q 038338          144 LQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPSSLGRLINLQTLCLDWCQLED-VAAIGQLKKLEI  222 (421)
Q Consensus       144 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~-~~~~~~l~~L~~  222 (421)
                      ..+...++|+++.|..  ..+-.. |+.++.|..|+++.+.+..+|...+.+..++.++...|..+. |.+++..+++++
T Consensus        39 ~~~kr~tvld~~s~r~--vn~~~n-~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~  115 (326)
T KOG0473|consen   39 ASFKRVTVLDLSSNRL--VNLGKN-FSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKK  115 (326)
T ss_pred             hccceeeeehhhhhHH--Hhhccc-hHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcch
Confidence            3667788888887764  333333 255677777888888887788888888778888777777776 888888888888


Q ss_pred             EEeeCCCCc
Q 038338          223 LNLADSNIE  231 (421)
Q Consensus       223 L~l~~~~l~  231 (421)
                      ++..++.+.
T Consensus       116 ~e~k~~~~~  124 (326)
T KOG0473|consen  116 NEQKKTEFF  124 (326)
T ss_pred             hhhccCcch
Confidence            888777644

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=88.87  E-value=0.44  Score=25.30  Aligned_cols=20  Identities=35%  Similarity=0.471  Sum_probs=14.1

Q ss_pred             CCCccEEEccCCCCCCCChh
Q 038338          172 TEELKVLSLIGIHFSSLPSS  191 (421)
Q Consensus       172 l~~L~~L~l~~~~~~~lp~~  191 (421)
                      +++|++|++++|.++.+|..
T Consensus         1 L~~L~~L~L~~N~l~~lp~~   20 (26)
T smart00369        1 LPNLRELDLSNNQLSSLPPG   20 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHH
Confidence            35677777777777777664

>smart00370 LRR Leucine-rich repeats, outliers

Probab=88.87  E-value=0.44  Score=25.30  Aligned_cols=20  Identities=35%  Similarity=0.471  Sum_probs=14.1

Q ss_pred             CCCccEEEccCCCCCCCChh
Q 038338          172 TEELKVLSLIGIHFSSLPSS  191 (421)
Q Consensus       172 l~~L~~L~l~~~~~~~lp~~  191 (421)
                      +++|++|++++|.++.+|..
T Consensus         1 L~~L~~L~L~~N~l~~lp~~   20 (26)
T smart00370        1 LPNLRELDLSNNQLSSLPPG   20 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHH
Confidence            35677777777777777664

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=86.26  E-value=0.025  Score=48.22  Aligned_cols=83  Identities=16%  Similarity=0.045  Sum_probs=54.1

Q ss_pred             ccCCCccEEEccCCCCCCCChhhhcccCCcEEEcccccCCC-cccccCcCCCCEEEeeCCCCcccchhhcCCCCCCEEec
Q 038338          170 EGTEELKVLSLIGIHFSSLPSSLGRLINLQTLCLDWCQLED-VAAIGQLKKLEILNLADSNIEQLPLEIGQLTGLRLLDL  248 (421)
Q Consensus       170 ~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~-~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l  248 (421)
                      ..++..++||++.++...+-..++.+..|..|+++.+.+.- |..++.+..+..+++..|+.++.|.+.+..+.+++++.
T Consensus        39 ~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~  118 (326)
T KOG0473|consen   39 ASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNEQ  118 (326)
T ss_pred             hccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhhh
Confidence            34566666677666666555556666666666666666665 66666666666666666666666766666777776666


Q ss_pred             cCCc
Q 038338          249 TNCW  252 (421)
Q Consensus       249 ~~~~  252 (421)
                      ..+.
T Consensus       119 k~~~  122 (326)
T KOG0473|consen  119 KKTE  122 (326)
T ss_pred             ccCc
Confidence            6543

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=85.56  E-value=0.32  Score=25.90  Aligned_cols=16  Identities=31%  Similarity=0.740  Sum_probs=11.5

Q ss_pred             CCCccEEEEeecCcee
Q 038338          398 FPRLKHLHVESCYEIV  413 (421)
Q Consensus       398 ~~~L~~L~i~~c~~L~  413 (421)
                      +|+|+.|++.+|+++.
T Consensus         1 c~~L~~L~l~~C~~it   16 (26)
T smart00367        1 CPNLRELDLSGCTNIT   16 (26)
T ss_pred             CCCCCEeCCCCCCCcC
Confidence            4677777777777664

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	421
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-19
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-19
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-17
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	8e-15
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-19
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	9e-19
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-17
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	7e-12
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-14
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-14
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-11
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	8e-11
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	8e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-14
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-13
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-12
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-11
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	9e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	8e-04
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-14
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-13
1o6v_A	466	Internalin A; bacterial infection, extracellular r	6e-13
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-12
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-10
1o6v_A	466	Internalin A; bacterial infection, extracellular r	7e-05
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-14
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-13
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-10
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-14
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-10
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-08
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-08
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-14
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-11
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-11
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-11
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-10
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	9e-10
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-06
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-13
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	6e-07
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	5e-04
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-13
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-13
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-13
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-10
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	6e-05
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-12
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-11
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-11
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-10
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-09
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-09
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-07
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-07
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-07
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-12
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	7e-10
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-07
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-12
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-10
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	7e-07
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	9e-07
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-06
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-12
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-12
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-10
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	8e-09
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-07
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-12
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-11
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	5e-11
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	9e-07
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-12
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	8e-10
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-09
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-09
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-09
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-08
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-07
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-12
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-11
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	8e-12
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-06
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-05
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	9e-12
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-07
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	4e-07
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	6e-06
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-11
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	5e-11
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-11
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-10
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-11
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-11
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-10
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-08
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-08
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-11
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-08
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-07
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-11
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	8e-09
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	9e-09
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-07
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-11
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-09
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-09
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-07
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-10
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	9e-10
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-09
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-06
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-10
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	5e-08
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-07
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	7e-07
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-06
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-10
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	7e-09
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-08
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	5e-10
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	6e-10
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-09
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	5e-07
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	8e-10
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	6e-09
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	8e-09
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	4e-04
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-09
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-08
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-06
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-06
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-06
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-09
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	8e-09
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-07
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-09
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-09
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	8e-09
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	8e-08
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-07
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	9e-09
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	9e-07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-08
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-08
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-06
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	6e-08
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-07
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	5e-07
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	8e-07
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	7e-08
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	4e-05
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	8e-08
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-07
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	7e-07
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-05
2a5y_B	549	CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis	9e-08
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-07
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-07
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-05
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-07
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-07
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-06
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-07
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	7e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	7e-07
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-06
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-04
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	2e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-06
3m19_A	251	Variable lymphocyte receptor A diversity region; a	6e-06
3m19_A	251	Variable lymphocyte receptor A diversity region; a	7e-06
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	7e-06
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-05
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	1e-05
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	1e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-05
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	6e-05
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	1e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-04
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-04
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	8e-04
3e6j_A	229	Variable lymphocyte receptor diversity region; var	4e-04

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 87.3 bits (217), Expect = 2e-19
 Identities = 31/108 (28%), Positives = 50/108 (46%), Gaps = 4/108 (3%)

Query: 175 LKVLSLIGIHFSSLPSSLGRLINLQTLCLDWC-QLEDV-AAIGQLKKLEILNLADSN-IE 231
           LK L +     S+L  ++  L  L+ L L  C  L +     G    L+ L L D + + 
Sbjct: 208 LKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLL 267

Query: 232 QLPLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNSFSG 279
            LPL+I +LT L  LDL  C +L  + P++I++L     + +      
Sbjct: 268 TLPLDIHRLTQLEKLDLRGCVNLSRL-PSLIAQLPANCIILVPPHLQA 314

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 85.8 bits (213), Expect = 9e-19
 Identities = 28/177 (15%), Positives = 60/177 (33%), Gaps = 13/177 (7%)

Query: 134 QRNIQELPERLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPSSLG 193
              ++   + L            + +   + ++         ++ +  G    +    L 
Sbjct: 22  STALRPYHDVLSQWQRHYNADRNRWHSAWRQANS-----NNPQIETRTGRALKATADLLE 76

Query: 194 RL--INLQTLCLDWCQLEDV-AAIGQLKKLEILNLADSNIEQLPLEIGQLTGLRLLDLTN 250
                    L L    L        +L  L+ + +  + + +LP  + Q  GL  L L  
Sbjct: 77  DATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLAR 136

Query: 251 CWSLQVIAPNVISKLSRLEELYMDNSFSGWEKV--EGGSNASLVELKRLTKLTTLEI 305
              L+ + P  I+ L+RL EL +  +     ++     S  +  E + L  L +L +
Sbjct: 137 N-PLRAL-PASIASLNRLRELSI-RACPELTELPEPLASTDASGEHQGLVNLQSLRL 190

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 82.3 bits (204), Expect = 1e-17
 Identities = 38/147 (25%), Positives = 65/147 (44%), Gaps = 28/147 (19%)

Query: 175 LKVLSLIGI-HFSSLPSSLGR---------LINLQTLCLDWCQLEDV-AAIGQLKKLEIL 223
           L+ LS+      + LP  L           L+NLQ+L L+W  +  + A+I  L+ L+ L
Sbjct: 152 LRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSL 211

Query: 224 NLADSNIEQLPLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNSFSGWEKV 283
            + +S +  L   I  L  L  LDL  C +L+   P +    + L+ L + +        
Sbjct: 212 KIRNSPLSALGPAIHHLPKLEELDLRGCTALRNY-PPIFGGRAPLKRLILKD-------- 262

Query: 284 EGGSNASLVEL----KRLTKLTTLEIE 306
                ++L+ L     RLT+L  L++ 
Sbjct: 263 ----CSNLLTLPLDIHRLTQLEKLDLR 285

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 65.0 bits (159), Expect = 7e-12
 Identities = 24/85 (28%), Positives = 36/85 (42%), Gaps = 4/85 (4%)

Query: 175 LKVLSLIGI-HFSSLPSSLGRLINLQTLCLDWC-QLEDV-AAIGQLKKLEILNLAD-SNI 230
           L+ L L G     + P   G    L+ L L  C  L  +   I +L +LE L+L    N+
Sbjct: 231 LEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNL 290

Query: 231 EQLPLEIGQLTGLRLLDLTNCWSLQ 255
            +LP  I QL    ++ +      Q
Sbjct: 291 SRLPSLIAQLPANCIILVPPHLQAQ 315

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 47.6 bits (114), Expect = 3e-06
 Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 3/63 (4%)

Query: 175 LKVLSLIGI-HFSSLPSSLGRLINLQTLCLDWC-QLEDV-AAIGQLKKLEILNLADSNIE 231
           LK L L    +  +LP  + RL  L+ L L  C  L  + + I QL    I+ +      
Sbjct: 255 LKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314

Query: 232 QLP 234
           QL 
Sbjct: 315 QLD 317

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 73.7 bits (182), Expect = 1e-14
 Identities = 36/189 (19%), Positives = 73/189 (38%), Gaps = 22/189 (11%)

Query: 130 ISLPQRNIQELPERLQCPNLQLFLLFRQGYGPVQISDL-FFEGTEELKVLSLIGIHFSSL 188
           + +    +  +       NL+   L        QI+D+       +L  L +     + +
Sbjct: 49  LVVAGEKVASIQGIEYLTNLEYLNLNGN-----QITDISPLSNLVKLTNLYIGTNKITDI 103

Query: 189 PSSLGRLINLQTLCLDWCQLEDVAAIGQLKKLEILNLADSNIEQLPLEIGQLTGLRLLDL 248
            + L  L NL+ L L+   + D++ +  L K+  LNL  ++       +  +TGL  L +
Sbjct: 104 SA-LQNLTNLRELYLNEDNISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTV 162

Query: 249 TNCWSLQVIAPNVISKLSRLEELYM-DNSFSGWEKVEG---------GSN--ASLVELKR 296
           T    ++ + P  I+ L+ L  L +  N       +             N    +  +  
Sbjct: 163 TES-KVKDVTP--IANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITPVAN 219

Query: 297 LTKLTTLEI 305
           +T+L +L+I
Sbjct: 220 MTRLNSLKI 228

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 73.0 bits (180), Expect = 2e-14
 Identities = 34/146 (23%), Positives = 58/146 (39%), Gaps = 16/146 (10%)

Query: 163 QISDL-FFEGTEELKVLSLIGIHFSSLPSSLGRLINLQTLCLDWCQLEDVAAIGQLKKLE 221
           QI+D+        L  L +     + L   L  L  L  L +   Q+ D+ A+  L KL+
Sbjct: 210 QITDITPVANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQISDINAVKDLTKLK 268

Query: 222 ILNLADSNIEQLPLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMD-NSFSGW 280
           +LN+  + I  +   +  L+ L  L L N   L      VI  L+ L  L++  N  +  
Sbjct: 269 MLNVGSNQISDIS-VLNNLSQLNSLFLNNN-QLGNEDMEVIGGLTNLTTLFLSQNHIT-- 324

Query: 281 EKVEGGSNASLVELKRLTKLTTLEIE 306
                     +  L  L+K+ + +  
Sbjct: 325 ---------DIRPLASLSKMDSADFA 341

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 64.9 bits (159), Expect = 1e-11
 Identities = 30/142 (21%), Positives = 58/142 (40%), Gaps = 11/142 (7%)

Query: 136 NIQELPERLQCPNLQLFLLFRQGYGPVQISDL-FFEGTEELKVLSLIGIHFSSLPSSLGR 194
            I ++        L    +        +I+DL       +L  L +     S + + +  
Sbjct: 210 QITDITPVANMTRLNSLKIGNN-----KITDLSPLANLSQLTWLEIGTNQISDINA-VKD 263

Query: 195 LINLQTLCLDWCQLEDVAAIGQLKKLEILNLADSNIEQLPLE-IGQLTGLRLLDLTNCWS 253
           L  L+ L +   Q+ D++ +  L +L  L L ++ +    +E IG LT L  L L+    
Sbjct: 264 LTKLKMLNVGSNQISDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQN-H 322

Query: 254 LQVIAPNVISKLSRLEELYMDN 275
           +  I P  ++ LS+++     N
Sbjct: 323 ITDIRP--LASLSKMDSADFAN 342

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 62.2 bits (152), Expect = 8e-11
 Identities = 29/145 (20%), Positives = 58/145 (40%), Gaps = 18/145 (12%)

Query: 163 QISDL-FFEGTEELKVLSLIGIHFSSLPSSLGRLINLQTLCLDWCQLEDVAAIGQLKKLE 221
           ++ D+       +L  LSL       + S L  L +L        Q+ D+  +  + +L 
Sbjct: 166 KVKDVTPIANLTDLYSLSLNYNQIEDI-SPLASLTSLHYFTAYVNQITDITPVANMTRLN 224

Query: 222 ILNLADSNIEQLPLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYM-DNSFSGW 280
            L + ++ I  L   +  L+ L  L++      Q+   N +  L++L+ L +  N  S  
Sbjct: 225 SLKIGNNKITDLS-PLANLSQLTWLEIGTN---QISDINAVKDLTKLKMLNVGSNQIS-- 278

Query: 281 EKVEGGSNASLVELKRLTKLTTLEI 305
                     +  L  L++L +L +
Sbjct: 279 ---------DISVLNNLSQLNSLFL 294

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 47.5 bits (114), Expect = 4e-06
 Identities = 20/109 (18%), Positives = 35/109 (32%), Gaps = 16/109 (14%)

Query: 198 LQTLCLDWCQLEDVAAIGQLKKLEILNLADSNIEQLPLEIGQLTGLRLLDLTNCWSLQVI 257
             TL      +  +     L +     L  +++  +     +L  +  L +     +  I
Sbjct: 2   AATLATLPAPINQIFPDADLAEGIRAVLQKASVTDVV-TQEELESITKLVVAGE-KVASI 59

Query: 258 APNVISKLSRLEELYM-DNSFSGWEKVEGGSNASLVELKRLTKLTTLEI 305
               I  L+ LE L +  N  +            +  L  L KLT L I
Sbjct: 60  QG--IEYLTNLEYLNLNGNQIT-----------DISPLSNLVKLTNLYI 95

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 46.8 bits (112), Expect = 8e-06
 Identities = 21/99 (21%), Positives = 39/99 (39%), Gaps = 7/99 (7%)

Query: 136 NIQELPERLQCPNLQLFLLFRQGYGPVQISDL-FFEGTEELKVLSLIGIHFSSL-PSSLG 193
            I ++        L++  +        QISD+       +L  L L      +     +G
Sbjct: 254 QISDINAVKDLTKLKMLNVGSN-----QISDISVLNNLSQLNSLFLNNNQLGNEDMEVIG 308

Query: 194 RLINLQTLCLDWCQLEDVAAIGQLKKLEILNLADSNIEQ 232
            L NL TL L    + D+  +  L K++  + A+  I++
Sbjct: 309 GLTNLTTLFLSQNHITDIRPLASLSKMDSADFANQVIKK 347

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 75.0 bits (185), Expect = 1e-14
 Identities = 30/142 (21%), Positives = 58/142 (40%), Gaps = 8/142 (5%)

Query: 163 QISDLFFEGTEELKVLSLIGIHFSSL-PSSLGRLINLQTLCLDWCQLEDV--AAIGQLKK 219
           Q+SD  F     L  L L+      +  +   +  NL TL L    L         QL+ 
Sbjct: 87  QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLEN 146

Query: 220 LEILNLADSNIEQLP---LEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMD-N 275
           L+ L L+++ I+ L    L+I   + L+ L+L++   ++  +P     + RL  L+++  
Sbjct: 147 LQELLLSNNKIQALKSEELDIFANSSLKKLELSSN-QIKEFSPGCFHAIGRLFGLFLNNV 205

Query: 276 SFSGWEKVEGGSNASLVELKRL 297
                   +     +   ++ L
Sbjct: 206 QLGPSLTEKLCLELANTSIRNL 227

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 70.8 bits (174), Expect = 3e-13
 Identities = 31/128 (24%), Positives = 52/128 (40%), Gaps = 9/128 (7%)

Query: 175 LKVLSLIGIHFSSL-PSSLGRLINLQTLCLDWCQLEDV--AAIGQLKKLEILNLADSNIE 231
           + VL+L       L  ++  R   L +L + +  +  +      +L  L++LNL  + + 
Sbjct: 27  ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS 86

Query: 232 QLPLE-IGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYM-DNSFSGWEKVEGGSNA 289
           QL  +     T L  L L +  S+Q I  N   K   L  L +  N  S     + G+  
Sbjct: 87  QLSDKTFAFCTNLTELHLMSN-SIQKIKNNPFVKQKNLITLDLSHNGLSS---TKLGTQV 142

Query: 290 SLVELKRL 297
            L  L+ L
Sbjct: 143 QLENLQEL 150

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 68.9 bits (169), Expect = 1e-12
 Identities = 33/149 (22%), Positives = 58/149 (38%), Gaps = 10/149 (6%)

Query: 163 QISDLFFEGTEELKVLSLIG--IHFSSLPSSLGRLINLQTLCLDWCQLEDV--AAIGQLK 218
           +I    F     L+VL L    I           L N+  + L + +   +   +   + 
Sbjct: 395 KIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVP 454

Query: 219 KLEILNLAD---SNIEQLPLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYM-D 274
            L+ L L      N++  P     L  L +LDL+N  ++  I  +++  L +LE L +  
Sbjct: 455 SLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNN-NIANINDDMLEGLEKLEILDLQH 513

Query: 275 NSFSGWEKVEGGSNASLVELKRLTKLTTL 303
           N+ +   K        +  LK L+ L  L
Sbjct: 514 NNLARLWK-HANPGGPIYFLKGLSHLHIL 541

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 65.4 bits (160), Expect = 1e-11
 Identities = 30/145 (20%), Positives = 53/145 (36%), Gaps = 14/145 (9%)

Query: 163 QISDLFFEGTEELKVLSLIGIHFSSLP-SSLGRLINLQTLCLDWCQLEDV--AAIGQLKK 219
           ++     +    LKVL+L     S L   +     NL  L L    ++ +      + K 
Sbjct: 63  KLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKN 122

Query: 220 LEILNLADSNIEQLPLE-IGQLTGLRLLDLTNCWSLQVIAPNVIS--KLSRLEELYM-DN 275
           L  L+L+ + +    L    QL  L+ L L+N   +Q +    +     S L++L +  N
Sbjct: 123 LITLDLSHNGLSSTKLGTQVQLENLQELLLSNN-KIQALKSEELDIFANSSLKKLELSSN 181

Query: 276 SFSGWEKVEGGSNASLVELKRLTKL 300
               +             + RL  L
Sbjct: 182 QIKEFSP------GCFHAIGRLFGL 200

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 59.2 bits (144), Expect = 1e-09
 Identities = 30/150 (20%), Positives = 54/150 (36%), Gaps = 17/150 (11%)

Query: 162 VQISDLFFEGTEELKVLSLIGIHFSSL-PSSLGRLINLQTLCLDWCQL-----EDVAAIG 215
           ++  +L       LK L L         P     +  L  L L+  QL     E +    
Sbjct: 160 LKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLEL 219

Query: 216 QLKKLEILNLADSNIEQLPLEIG---QLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELY 272
               +  L+L++S +           + T L +LDL+   +L V+  +  + L +LE  +
Sbjct: 220 ANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYN-NLNVVGNDSFAWLPQLEYFF 278

Query: 273 M-DNSFSGWEKVEGGSNASLVELKRLTKLT 301
           +  N+           + SL  L  +  L 
Sbjct: 279 LEYNNIQHL------FSHSLHGLFNVRYLN 302

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 55.0 bits (133), Expect = 2e-08
 Identities = 30/146 (20%), Positives = 53/146 (36%), Gaps = 13/146 (8%)

Query: 163 QISDLFFEGTEELKVLSLIGIHFSSL-PSSLGRLINLQTLCLDWCQLEDVAAIGQ----- 216
           +I D  F+  + L+ L++       +  +    LINL+ L L            +     
Sbjct: 319 KIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSL 378

Query: 217 -LKKLEILNLADSNIEQLPLE-IGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMD 274
               L ILNL  + I ++  +    L  L +LDL      Q +       L  + E+Y+ 
Sbjct: 379 AHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLS 438

Query: 275 NSFSGWEKVEGGSNASLVELKRLTKL 300
            +     K    +  S   +  L +L
Sbjct: 439 YN-----KYLQLTRNSFALVPSLQRL 459

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 53.1 bits (128), Expect = 9e-08
 Identities = 27/125 (21%), Positives = 51/125 (40%), Gaps = 14/125 (11%)

Query: 168 FFEGTEELKVLSLIGIHFSSLPSS-LGRLINLQTLCLDWCQLEDVAA----------IGQ 216
            F+    L +L L   + +++    L  L  L+ L L    L  +            +  
Sbjct: 475 PFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKG 534

Query: 217 LKKLEILNLADSNIEQLPLE-IGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYM-D 274
           L  L ILNL  +  +++P+E    L  L+++DL    +L  +  +V +    L+ L +  
Sbjct: 535 LSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLN-NLNTLPASVFNNQVSLKSLNLQK 593

Query: 275 NSFSG 279
           N  + 
Sbjct: 594 NLITS 598

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 40.8 bits (96), Expect = 8e-04
 Identities = 17/82 (20%), Positives = 36/82 (43%), Gaps = 10/82 (12%)

Query: 220 LEILNLADSNIEQLPLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYM-DNSFS 278
            E+ + +   + Q+P ++   T + +L+LT+   L+ +     ++ S+L  L +  N+ S
Sbjct: 6   HEVADCSHLKLTQVPDDL--PTNITVLNLTHN-QLRRLPAANFTRYSQLTSLDVGFNTIS 62

Query: 279 GWEKVEGGSNASLVELKRLTKL 300
             E           +L  L  L
Sbjct: 63  KLE------PELCQKLPMLKVL 78

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 73.8 bits (182), Expect = 2e-14
 Identities = 39/199 (19%), Positives = 75/199 (37%), Gaps = 31/199 (15%)

Query: 108 NIPNVADLEKKMEETIRKDPIAISLPQRNIQELPERLQCPNLQLFLLFRQGYGPVQISDL 167
            I     L +KM+  + K  +  ++ Q ++ ++   LQ   L              I  +
Sbjct: 16  QIFTDTALAEKMKTVLGKTNVTDTVSQTDLDQV-TTLQADRLG-------------IKSI 61

Query: 168 -FFEGTEELKVLSLIGIHFSSLPSSLGRLINLQTLCLDWCQLEDVAAIGQLKKLEILNLA 226
              E    L  ++      + +   L  L  L  + ++  Q+ D+  +  L  L  L L 
Sbjct: 62  DGVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLF 120

Query: 227 DSNIEQLPLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNSFSGWEKVEGG 286
           ++ I  +   +  LT L  L+L++     +   + +S L+ L++L   N  +        
Sbjct: 121 NNQITDID-PLKNLTNLNRLELSSN---TISDISALSGLTSLQQLSFGNQVT-------- 168

Query: 287 SNASLVELKRLTKLTTLEI 305
               L  L  LT L  L+I
Sbjct: 169 ---DLKPLANLTTLERLDI 184

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 71.5 bits (176), Expect = 1e-13
 Identities = 41/185 (22%), Positives = 69/185 (37%), Gaps = 23/185 (12%)

Query: 134 QRNIQELPERLQCPNLQLFLLFRQGYGPVQISDL-FFEGTEELKVLSLIGIHFSSLPSSL 192
              + +L        L+   +        ++SD+        L+ L       S +   L
Sbjct: 164 GNQVTDLKPLANLTTLERLDISSN-----KVSDISVLAKLTNLESLIATNNQISDITP-L 217

Query: 193 GRLINLQTLCLDWCQLEDVAAIGQLKKLEILNLADSNIEQLPLEIGQLTGLRLLDLTNCW 252
           G L NL  L L+  QL+D+  +  L  L  L+LA++ I  L   +  LT L  L L    
Sbjct: 218 GILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLA-PLSGLTKLTELKLGAN- 275

Query: 253 SLQVIAPNVISKLSRLEELYM-DNSFSGWEKVEGGSN-----------ASLVELKRLTKL 300
            +  I+P  ++ L+ L  L + +N       +    N           + +  +  LTKL
Sbjct: 276 QISNISP--LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKL 333

Query: 301 TTLEI 305
             L  
Sbjct: 334 QRLFF 338

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 69.2 bits (170), Expect = 6e-13
 Identities = 32/180 (17%), Positives = 64/180 (35%), Gaps = 12/180 (6%)

Query: 136 NIQELPERLQCPNLQLFLLFRQGYGPVQISDL-FFEGTEELKVLSLIGIHFSSLPSSLGR 194
            I  L        L    L        QIS++    G   L  L L       +   +  
Sbjct: 254 QISNLAPLSGLTKLTELKLGAN-----QISNISPLAGLTALTNLELNENQLEDISP-ISN 307

Query: 195 LINLQTLCLDWCQLEDVAAIGQLKKLEILNLADSNIEQLPLEIGQLTGLRLLDLTNCWSL 254
           L NL  L L +  + D++ +  L KL+ L   ++ +  +   +  LT +  L   +    
Sbjct: 308 LKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVS-SLANLTNINWLSAGHN--- 363

Query: 255 QVIAPNVISKLSRLEELYM-DNSFSGWEKVEGGSNASLVELKRLTKLTTLEIEVRDAEIL 313
           Q+     ++ L+R+ +L + D +++        + +    +K +T        + D    
Sbjct: 364 QISDLTPLANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSY 423

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 68.5 bits (168), Expect = 1e-12
 Identities = 44/173 (25%), Positives = 68/173 (39%), Gaps = 23/173 (13%)

Query: 136 NIQELPERLQCPNLQLFLLFRQGYGPVQISDL-FFEGTEELKVLSLIGIHFSSLPSSLGR 194
            ++++       NL    L        QIS+L    G  +L  L L     S++   L  
Sbjct: 232 QLKDIGTLASLTNLTDLDLANN-----QISNLAPLSGLTKLTELKLGANQISNISP-LAG 285

Query: 195 LINLQTLCLDWCQLEDVAAIGQLKKLEILNLADSNIEQLPLEIGQLTGLRLLDLTNCWSL 254
           L  L  L L+  QLED++ I  LK L  L L  +NI  +   +  LT L+ L   N    
Sbjct: 286 LTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDIS-PVSSLTKLQRLFFYNN--- 341

Query: 255 QVIAPNVISKLSRLEELYMD-NSFSGWEKVEGGSNASLVELKRLTKLTTLEIE 306
           +V   + ++ L+ +  L    N  S               L  LT++T L + 
Sbjct: 342 KVSDVSSLANLTNINWLSAGHNQISDLT-----------PLANLTRITQLGLN 383

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 61.1 bits (149), Expect = 2e-10
 Identities = 27/138 (19%), Positives = 48/138 (34%), Gaps = 9/138 (6%)

Query: 136 NIQELPERLQCPNLQLFLLFRQGYGPVQISDL-FFEGTEELKVLSLIGIHFSSLPSSLGR 194
            ++++       NL    L+        ISD+       +L+ L       S + S L  
Sbjct: 298 QLEDISPISNLKNLTYLTLYFN-----NISDISPVSSLTKLQRLFFYNNKVSDVSS-LAN 351

Query: 195 LINLQTLCLDWCQLEDVAAIGQLKKLEILNLADSNIEQLPLEIGQLTGLRLLDLTNCWSL 254
           L N+  L     Q+ D+  +  L ++  L L D      P+       + + +     + 
Sbjct: 352 LTNINWLSAGHNQISDLTPLANLTRITQLGLNDQAWTNAPVNYKAN--VSIPNTVKNVTG 409

Query: 255 QVIAPNVISKLSRLEELY 272
            +IAP  IS      E  
Sbjct: 410 ALIAPATISDGGSYTEPD 427

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 43.8 bits (104), Expect = 7e-05
 Identities = 15/100 (15%), Positives = 32/100 (32%), Gaps = 16/100 (16%)

Query: 207 QLEDVAAIGQLKKLEILNLADSNIEQLPLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLS 266
            +  +     L +     L  +N+         L  +  L       ++ I    +  L+
Sbjct: 13  PINQIFTDTALAEKMKTVLGKTNVTDTV-SQTDLDQVTTLQADRL-GIKSIDG--VEYLN 68

Query: 267 RLEELYM-DNSFSGWEKVEGGSNASLVELKRLTKLTTLEI 305
            L ++   +N  +            +  LK LTKL  + +
Sbjct: 69  NLTQINFSNNQLT-----------DITPLKNLTKLVDILM 97

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 74.5 bits (183), Expect = 2e-14
 Identities = 30/179 (16%), Positives = 66/179 (36%), Gaps = 17/179 (9%)

Query: 136 NIQELPERL-QCPNLQ-LFL-------LFRQGYGPVQISDLFFEGTEELKVLSLIGIHFS 186
           N+ +LP+ L   P LQ L +         +      +++D    G + +++  +   +  
Sbjct: 503 NMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPK-IQIFYMGYNNLE 561

Query: 187 SLPSS--LGRLINLQTLCLDWCQLEDVAAIGQLKKLEILNLADSNIEQLPLEIGQLTG-L 243
             P+S  L +++ L  L     ++  + A G   KL  L L  + IE++P +    T  +
Sbjct: 562 EFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQV 621

Query: 244 RLLDLTNCWSLQVIAPNV-ISKLSRLEELYM-DNSFSGWEKVEGGSNASLVELKRLTKL 300
             L  ++   L+ I        +  +  +    N     E      +    +    + +
Sbjct: 622 EGLGFSHN-KLKYIPNIFNAKSVYVMGSVDFSYNKIGS-EGRNISCSMDDYKGINASTV 678

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 71.8 bits (176), Expect = 2e-13
 Identities = 29/198 (14%), Positives = 62/198 (31%), Gaps = 32/198 (16%)

Query: 136 NIQELPERLQCPNLQL-FLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPSSLGR 194
           +            L       R+    +    +F +  + L +  L+    +  P  +  
Sbjct: 358 SETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPE-MKP 416

Query: 195 LINLQTLCLDWCQLEDV--------AAIGQLKKLEILNLADSNI---------------- 230
           +     + L   Q+ ++         AI +L KL+I+  A+S                  
Sbjct: 417 IKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDY 476

Query: 231 ----EQLPLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYM-DNSFSGWEKVEG 285
               E   L    L  L  ++L NC ++  + P+ +  L  L+ L +  N      +++ 
Sbjct: 477 AKQYENEELSWSNLKDLTDVELYNCPNMTQL-PDFLYDLPELQSLNIACNRGISAAQLKA 535

Query: 286 GSNASLVELKRLTKLTTL 303
                  +     K+   
Sbjct: 536 DWTRLADDEDTGPKIQIF 553

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 61.0 bits (148), Expect = 4e-10
 Identities = 12/99 (12%), Positives = 32/99 (32%), Gaps = 8/99 (8%)

Query: 185 FSSLPSSLGRLINLQTLCLDWCQLEDV---AAIGQLKKLEILNLADSNIEQLPLEIGQLT 241
                 +      L T+ L + +L  +        L  L  ++++ +     P +    +
Sbjct: 717 LKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSS 776

Query: 242 GLRLLDLTNCWSLQV-----IAPNVISKLSRLEELYMDN 275
            L+   + +    +        P  I+    L +L + +
Sbjct: 777 QLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGS 815

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 72.8 bits (179), Expect = 6e-14
 Identities = 31/131 (23%), Positives = 43/131 (32%), Gaps = 11/131 (8%)

Query: 175 LKVLSLIGIHFSSL-PSSLGRLINLQTLCLDWCQLEDV--AAIGQLKKLEILNLADSNIE 231
            K L L       L   S      LQ L L  C+++ +   A   L  L  L L  + I+
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89

Query: 232 QLPLE-IGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYM-DNSFSGWEKVEGGSNA 289
            L L     L+ L+ L      +L  +    I  L  L+EL +  N              
Sbjct: 90  SLALGAFSGLSSLQKLVAVET-NLASLENFPIGHLKTLKELNVAHNLIQS-----FKLPE 143

Query: 290 SLVELKRLTKL 300
               L  L  L
Sbjct: 144 YFSNLTNLEHL 154

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 62.4 bits (152), Expect = 1e-10
 Identities = 41/195 (21%), Positives = 64/195 (32%), Gaps = 37/195 (18%)

Query: 136 NIQELPERLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPSSLGRL 195
                   +  P+L+   L R G            GT  LK L L      ++ S+   L
Sbjct: 336 KGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGL 395

Query: 196 INLQTLCLDWCQLEDV---------------------------AAIGQLKKLEILNLADS 228
             L+ L      L+ +                                L  LE+L +A +
Sbjct: 396 EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN 455

Query: 229 NIEQ--LPLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYM-DNSFSGWEKVEG 285
           + ++  LP    +L  L  LDL+ C  L+ ++P   + LS L+ L M  N+F        
Sbjct: 456 SFQENFLPDIFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMSHNNFF------S 508

Query: 286 GSNASLVELKRLTKL 300
                   L  L  L
Sbjct: 509 LDTFPYKCLNSLQVL 523

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 56.2 bits (136), Expect = 1e-08
 Identities = 28/146 (19%), Positives = 55/146 (37%), Gaps = 9/146 (6%)

Query: 164 ISDLFFEGTEELKVLSLIG--IHFSSLPSSLGRLINLQTLCLDWCQLEDV--AAIGQLKK 219
           + +      + LK L++    I    LP     L NL+ L L   +++ +    +  L +
Sbjct: 115 LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQ 174

Query: 220 LEI----LNLADSNIEQLPLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMD- 274
           + +    L+L+ + +  +     +   L  L L N +    +    I  L+ LE   +  
Sbjct: 175 MPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVL 234

Query: 275 NSFSGWEKVEGGSNASLVELKRLTKL 300
             F     +E    ++L  L  LT  
Sbjct: 235 GEFRNEGNLEKFDKSALEGLCNLTIE 260

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 55.8 bits (135), Expect = 1e-08
 Identities = 28/165 (16%), Positives = 50/165 (30%), Gaps = 11/165 (6%)

Query: 136 NIQELPERLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPSSLGRL 195
            I+ + +       Q   L        +         + LK L+       +  S +  L
Sbjct: 293 TIERVKDFSYNFGWQHLELVN-----CKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVD-L 346

Query: 196 INLQTLCLDWCQLEDV----AAIGQLKKLEILNLADSNIEQLPLEIGQLTGLRLLDLTNC 251
            +L+ L L    L        +      L+ L+L+ + +  +      L  L  LD  + 
Sbjct: 347 PSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHS 406

Query: 252 WSLQVIAPNVISKLSRLEELYM-DNSFSGWEKVEGGSNASLVELK 295
              Q+   +V   L  L  L +                +SL  LK
Sbjct: 407 NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLK 451

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 49.6 bits (119), Expect = 1e-06
 Identities = 29/178 (16%), Positives = 51/178 (28%), Gaps = 28/178 (15%)

Query: 128 IAISLPQRNIQELPERLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSL----IGI 183
            ++++ +  IQ L   L+   L L     +G    +      EG   L +       +  
Sbjct: 212 DSLNVMKTCIQGLA-GLEVHRLVLGEFRNEG-NLEKFDKSALEGLCNLTIEEFRLAYLDY 269

Query: 184 HFSSLPSSLGRLINLQTLCLDWCQLEDVAAIGQLKKLEILNLADSNIEQLP--------- 234
           +   +      L N+ +  L    +E V         + L L +    Q P         
Sbjct: 270 YLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKR 329

Query: 235 -----------LEIGQLTGLRLLDLT-NCWSLQVIAPNVISKLSRLEELYM-DNSFSG 279
                           L  L  LDL+ N  S +          + L+ L +  N    
Sbjct: 330 LTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT 387

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 72.4 bits (178), Expect = 8e-14
 Identities = 37/175 (21%), Positives = 69/175 (39%), Gaps = 15/175 (8%)

Query: 136 NIQELPERL--QCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPS--- 190
             + L +      P+L   L  +     +++     E  E L+ L L      +      
Sbjct: 312 KFENLCQISASNFPSLT-HLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNL 370

Query: 191 SLGRLINLQTLCLDWCQLEDV--AAIGQLKKLEILNLADSNIEQLPLE--IGQLTGLRLL 246
            L  L +LQ+L L + +   +   A  +  +LE+L+LA + ++    +     L  L++L
Sbjct: 371 QLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVL 430

Query: 247 DLTNCWSLQVIAPNVISKLSRLEELYM-DNSFSGWEKVEGGSNASLVELKRLTKL 300
           +L++   L + +  +   L  L+ L +  N F            SL  L RL  L
Sbjct: 431 NLSHS-LLDISSEQLFDGLPALQHLNLQGNHFPK---GNIQKTNSLQTLGRLEIL 481

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 65.4 bits (160), Expect = 1e-11
 Identities = 26/139 (18%), Positives = 46/139 (33%), Gaps = 13/139 (9%)

Query: 175 LKVLSLIGIHFSSL-PSSLGRLINLQTLCLDWCQLEDV--AAIGQLKKLEILNLADSNIE 231
            + L        ++  ++  RLINL  L L  CQ+  +         +L+ L L  + + 
Sbjct: 35  TECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLI 94

Query: 232 QLPLEI-GQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYM-DNSFSGWEKVEGGSNA 289
            +          L+ L       +  I    +     LE LY+  N  S    ++     
Sbjct: 95  FMAETALSGPKALKHLFFIQT-GISSIDFIPLHNQKTLESLYLGSNHISS---IKLPKGF 150

Query: 290 SLVELKRLT----KLTTLE 304
              +LK L      +  L 
Sbjct: 151 PTEKLKVLDFQNNAIHYLS 169

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 64.3 bits (157), Expect = 3e-11
 Identities = 23/169 (13%), Positives = 53/169 (31%), Gaps = 15/169 (8%)

Query: 141 PERLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPSSL---GRLIN 197
           P        Q           V    L     + L + +   +    +  ++      ++
Sbjct: 196 PGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMS 255

Query: 198 LQTLCLDWCQLEDV--AAIGQLKKLEILNLADSNIEQLPLEIGQLTGLRLLDLTNCWSLQ 255
           ++++ L      ++          L+ L+L  +++ +LP  +  L+ L+ L L+     +
Sbjct: 256 VESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSAN-KFE 314

Query: 256 VIAPNVISKLSRLEELYM-DNSFSGWEKVEGGSNASLVELKRLTKLTTL 303
            +     S    L  L +  N+                 L+ L  L  L
Sbjct: 315 NLCQISASNFPSLTHLSIKGNTKRL--------ELGTGCLENLENLREL 355

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 63.9 bits (156), Expect = 3e-11
 Identities = 26/147 (17%), Positives = 52/147 (35%), Gaps = 9/147 (6%)

Query: 136 NIQELPERL--QCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPS-SL 192
            +  +      +  NL    L R       I +  F+    L  L L       +   +L
Sbjct: 44  VLPTIQNTTFSRLINLTFLDLTRCQ--IYWIHEDTFQSQHRLDTLVLTANPLIFMAETAL 101

Query: 193 GRLINLQTLCLDWCQLEDV--AAIGQLKKLEILNLADSNIEQLPL-EIGQLTGLRLLDLT 249
                L+ L      +  +    +   K LE L L  ++I  + L +      L++LD  
Sbjct: 102 SGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQ 161

Query: 250 NCWSLQVIAPNVISKLSRLEELYMDNS 276
           N  ++  ++   +S L +   L ++ +
Sbjct: 162 NN-AIHYLSKEDMSSLQQATNLSLNLN 187

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 60.8 bits (148), Expect = 4e-10
 Identities = 32/177 (18%), Positives = 53/177 (29%), Gaps = 23/177 (12%)

Query: 136 NIQELPERL--QCPNLQLFLLFRQGYGPVQISDL--FFEGTEELKVLSLIGIHFSSLPS- 190
               +          LQ   L         +S+L     G   LK L L    F +L   
Sbjct: 265 YFFNISSNTFHCFSGLQELDLTA-----THLSELPSGLVGLSTLKKLVLSANKFENLCQI 319

Query: 191 SLGRLINLQTLCLDWCQLE---DVAAIGQLKKLEILNLADSNIEQLPLEIGQLTG---LR 244
           S     +L  L +             +  L+ L  L+L+  +IE       QL     L+
Sbjct: 320 SASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQ 379

Query: 245 LLDLTNCWSLQVIAPNVISKLSRLEELYM-DNSFSGWEKVEGGSNASLVELKRLTKL 300
            L+L+       +      +  +LE L +        +     + +    L  L  L
Sbjct: 380 SLNLSYN-EPLSLKTEAFKECPQLELLDLAFTRLKVKD-----AQSPFQNLHLLKVL 430

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 59.6 bits (145), Expect = 9e-10
 Identities = 29/123 (23%), Positives = 54/123 (43%), Gaps = 8/123 (6%)

Query: 164 ISDLFFEGTEELKVLSLIGIHFSSL----PSSLGRLINLQTLCLDWCQLEDVA--AIGQL 217
            S+  F+G   L+ L+L G HF        +SL  L  L+ L L +C L  +   A   L
Sbjct: 440 SSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSL 499

Query: 218 KKLEILNLADSNIEQLPLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYM-DNS 276
           K +  ++L+ + +    +E         L+L +   + +I P+++  LS+   + +  N 
Sbjct: 500 KMMNHVDLSHNRLTSSSIEALSHLKGIYLNLASN-HISIILPSLLPILSQQRTINLRQNP 558

Query: 277 FSG 279
              
Sbjct: 559 LDC 561

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 48.5 bits (116), Expect = 2e-06
 Identities = 24/165 (14%), Positives = 45/165 (27%), Gaps = 33/165 (20%)

Query: 163 QISDLFFEGTEELKVLSLIGIHFSSL-PSSLGRLINLQTLCLDWCQLEDVA--AIGQLKK 219
            +++    G + LK L  I    SS+    L     L++L L    +  +        +K
Sbjct: 95  FMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEK 154

Query: 220 LEILNLAD-------------------------SN-IEQLPLEIGQLTGLRLLDLT-NCW 252
           L++L+  +                          N I  +          + L+      
Sbjct: 155 LKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQN 214

Query: 253 SLQVIAPNVISKLSRLEELYM-DNSFSGWEKV--EGGSNASLVEL 294
            L +      S +  L      D           EG    S+  +
Sbjct: 215 LLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESI 259

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 72.1 bits (176), Expect = 1e-13
 Identities = 44/215 (20%), Positives = 82/215 (38%), Gaps = 38/215 (17%)

Query: 108 NIPNVADLEKKMEETIRKDPIA-------------ISLPQRNIQELPERLQCPNLQLFLL 154
            I       + +++ ++K  +              I     +I+ +      PN+    L
Sbjct: 13  QIFPDDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFL 72

Query: 155 FRQGYGPVQISDLF-FEGTEELKVLSLIGIHFSSLPSSLGRLINLQTLCLDWCQLEDVAA 213
                   +++D+      + L  L L       L SSL  L  L++L L+   + D+  
Sbjct: 73  NGN-----KLTDIKPLTNLKNLGWLFLDENKIKDL-SSLKDLKKLKSLSLEHNGISDING 126

Query: 214 IGQLKKLEILNLADSNIEQLPLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYM 273
           +  L +LE L L ++ I  +   + +LT L  L L +   +  I P  ++ L++L+ LY+
Sbjct: 127 LVHLPQLESLYLGNNKITDIT-VLSRLTKLDTLSLEDN-QISDIVP--LAGLTKLQNLYL 182

Query: 274 DNSFSGWEKVEGGSN--ASLVELKRLTKLTTLEIE 306
                         N  + L  L  L  L  LE+ 
Sbjct: 183 SK------------NHISDLRALAGLKNLDVLELF 205

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 50.5 bits (120), Expect = 6e-07
 Identities = 30/151 (19%), Positives = 54/151 (35%), Gaps = 19/151 (12%)

Query: 136 NIQELPERLQCPNLQLFLLFRQGYGPVQISDL-FFEGTEELKVLSLIGIHFSSLPSSLGR 194
            I ++   +  P L+   L        +I+D+       +L  LSL     S +   L  
Sbjct: 120 GISDINGLVHLPQLESLYLGNN-----KITDITVLSRLTKLDTLSLEDNQISDI-VPLAG 173

Query: 195 LINLQTLCLDWCQLEDVAAIGQLKKLEILNLADSNIEQLPLEIGQLTGLRLLDLTNCWSL 254
           L  LQ L L    + D+ A+  LK L++L L        P+           +L    ++
Sbjct: 174 LTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQECLNKPIN-------HQSNLVVPNTV 226

Query: 255 -----QVIAPNVISKLSRLEELYMDNSFSGW 280
                 ++ P +IS     E+  +      +
Sbjct: 227 KNTDGSLVTPEIISDDGDYEKPNVKWHLPEF 257

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 41.2 bits (96), Expect = 5e-04
 Identities = 16/112 (14%), Positives = 37/112 (33%), Gaps = 16/112 (14%)

Query: 207 QLEDVAAIGQLKKLEILNLADSNIEQLPLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLS 266
            ++ +       +    NL   ++        +L  +  +   N   ++ +    I  L 
Sbjct: 10  PIKQIFPDDAFAETIKDNLKKKSVTDAV-TQNELNSIDQIIANNS-DIKSVQG--IQYLP 65

Query: 267 RLEELYMDN----SFSGWEKVEG------GSN--ASLVELKRLTKLTTLEIE 306
            + +L+++            ++         N    L  LK L KL +L +E
Sbjct: 66  NVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLE 117

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 70.0 bits (172), Expect = 1e-13
 Identities = 32/169 (18%), Positives = 61/169 (36%), Gaps = 10/169 (5%)

Query: 136 NIQELPERL--QCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPSSLG 193
            +Q LP  +  +   L    L   G            GT  LK L L      ++ S+  
Sbjct: 39  KLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFL 98

Query: 194 RLINLQTLCLDWCQLEDVAAIG---QLKKLEILNLADSNIEQLPLEI-GQLTGLRLLDLT 249
            L  L+ L      L+ ++       L+ L  L+++ ++       I   L+ L +L + 
Sbjct: 99  GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMA 158

Query: 250 NCWSLQVIAPNVISKLSRLEELYMD-NSFSGWEKVEGGSNASLVELKRL 297
                +   P++ ++L  L  L +         ++   +  SL  L+ L
Sbjct: 159 GNSFQENFLPDIFTELRNLTFLDLSQCQLE---QLSPTAFNSLSSLQVL 204

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 53.9 bits (130), Expect = 3e-08
 Identities = 23/107 (21%), Positives = 35/107 (32%), Gaps = 5/107 (4%)

Query: 174 ELKVLSLIGIHFSSLPSS-LGRLINLQTLCLDWCQLEDVAAIGQ----LKKLEILNLADS 228
               L L      SLP     +L  L  L L    L       Q       L+ L+L+ +
Sbjct: 29  SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN 88

Query: 229 NIEQLPLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDN 275
            +  +      L  L  LD  +    Q+   +V   L  L  L + +
Sbjct: 89  GVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISH 135

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 67.7 bits (166), Expect = 2e-13
 Identities = 28/150 (18%), Positives = 58/150 (38%), Gaps = 21/150 (14%)

Query: 163 QISDL-FFEGTEELKVLSLIGIHFSSLPSSLGRLINLQTLCLDWCQLED--VAAIGQLKK 219
            ++DL   E    +K L++  IH ++  + +  L NL+ L +    +    +  +  L  
Sbjct: 55  NVTDLTGIEYAHNIKDLTINNIHATNY-NPISGLSNLERLRIMGKDVTSDKIPNLSGLTS 113

Query: 220 LEILNLADSNIEQLPLE-IGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNSFS 278
           L +L+++ S  +   L  I  L  +  +DL+   ++  I P  +  L  L+ L +     
Sbjct: 114 LTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP--LKTLPELKSLNIQF--- 168

Query: 279 GWEKVEGGSN--ASLVELKRLTKLTTLEIE 306
                    +       ++   KL  L   
Sbjct: 169 ---------DGVHDYRGIEDFPKLNQLYAF 189

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 67.3 bits (165), Expect = 2e-13
 Identities = 26/144 (18%), Positives = 60/144 (41%), Gaps = 12/144 (8%)

Query: 163 QISDLFFEGTEELKVLSLIGIHFSSLPSSLGRLINLQTLCLDWCQLEDVAAIGQLKKLEI 222
             +++       L  ++L  I+ + L + +    N++ L ++     +   I  L  LE 
Sbjct: 34  STANITEAQMNSLTYITLANINVTDL-TGIEYAHNIKDLTINNIHATNYNPISGLSNLER 92

Query: 223 LNLADSNIEQLPLE-IGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNSFSGWE 281
           L +   ++    +  +  LT L LLD+++  +        I+ L ++  + +  +     
Sbjct: 93  LRIMGKDVTSDKIPNLSGLTSLTLLDISHS-AHDDSILTKINTLPKVNSIDLSYN----- 146

Query: 282 KVEGGSNASLVELKRLTKLTTLEI 305
               G+   ++ LK L +L +L I
Sbjct: 147 ----GAITDIMPLKTLPELKSLNI 166

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 58.8 bits (143), Expect = 2e-10
 Identities = 32/194 (16%), Positives = 69/194 (35%), Gaps = 25/194 (12%)

Query: 98  VSVAAETRMFNIPNVADLEKKMEETIRKDPIA------------ISLPQRNIQELPERLQ 145
             + A     NIP+ +  +  +   + +   A            I+L   N+ +L     
Sbjct: 6   TGLKASQDNVNIPD-STFKAYLNGLLGQSSTANITEAQMNSLTYITLANINVTDLTGIEY 64

Query: 146 CPNLQLFLLFRQGYGPVQISDL-FFEGTEELKVLSLIGIHFSSL-PSSLGRLINLQTLCL 203
             N++   +          ++     G   L+ L ++G   +S    +L  L +L  L +
Sbjct: 65  AHNIKDLTINNI-----HATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI 119

Query: 204 DWCQLED--VAAIGQLKKLEILNLADSNIEQLPLEIGQLTGLRLLDLTNCWSLQVIAPNV 261
                +D  +  I  L K+  ++L+ +      + +  L  L+ L++       V     
Sbjct: 120 SHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFD---GVHDYRG 176

Query: 262 ISKLSRLEELYMDN 275
           I    +L +LY  +
Sbjct: 177 IEDFPKLNQLYAFS 190

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 42.6 bits (101), Expect = 6e-05
 Identities = 13/71 (18%), Positives = 20/71 (28%), Gaps = 3/71 (4%)

Query: 163 QISDLFFEGTEELK---VLSLIGIHFSSLPSSLGRLINLQTLCLDWCQLEDVAAIGQLKK 219
              D        L     + L      +    L  L  L++L + +  + D   I    K
Sbjct: 123 AHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDYRGIEDFPK 182

Query: 220 LEILNLADSNI 230
           L  L      I
Sbjct: 183 LNQLYAFSQTI 193

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 68.0 bits (167), Expect = 2e-12
 Identities = 29/124 (23%), Positives = 53/124 (42%), Gaps = 11/124 (8%)

Query: 185 FSSLPSSLGRLINLQTLCLDWCQLE-DVAAIGQLKKLEILNLADSNIE-QLP--LEIGQL 240
           FS++ SSL  L  L++L L    +   V+       L  L+L+ +++   +     +G  
Sbjct: 66  FSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSC 125

Query: 241 TGLRLLDLTNCWSLQVIAPNVISKLSRLEELYM-DNSFSGWEKVEGGSNASLVELKRLTK 299
           +GL+ L++++         +   KL+ LE L +  NS S      G +    V      +
Sbjct: 126 SGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSIS------GANVVGWVLSDGCGE 179

Query: 300 LTTL 303
           L  L
Sbjct: 180 LKHL 183

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 64.9 bits (159), Expect = 2e-11
 Identities = 28/109 (25%), Positives = 44/109 (40%), Gaps = 5/109 (4%)

Query: 175 LKVLSLIGIHFS-SLPSSLGRLINLQTLCLDWCQLEDVAAIGQLKKLEILNLADSNIE-Q 232
           L+ L + G   S     ++     L+ L +   Q         LK L+ L+LA++    +
Sbjct: 225 LQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGE 284

Query: 233 LPLEI-GQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYM-DNSFSG 279
           +P  + G    L  LDL+         P      S LE L +  N+FSG
Sbjct: 285 IPDFLSGACDTLTGLDLSGN-HFYGAVPPFFGSCSLLESLALSSNNFSG 332

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 63.8 bits (156), Expect = 5e-11
 Identities = 37/143 (25%), Positives = 59/143 (41%), Gaps = 28/143 (19%)

Query: 165 SDLFFEGTEELKVLSLIGIHFS-SLPSSLGRLINLQTLCLDWCQLEDV--AAIGQLKKLE 221
            +L       L+ L L    F+  +P +L     L +L L +  L     +++G L KL 
Sbjct: 386 PNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLR 445

Query: 222 ILNLADSNIE-QLPLEIGQLTGLRLLDL-------------TNCWSLQVIA--------- 258
            L L  + +E ++P E+  +  L  L L             +NC +L  I+         
Sbjct: 446 DLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGE 505

Query: 259 -PNVISKLSRLEELYM-DNSFSG 279
            P  I +L  L  L + +NSFSG
Sbjct: 506 IPKWIGRLENLAILKLSNNSFSG 528

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 62.6 bits (153), Expect = 1e-10
 Identities = 35/169 (20%), Positives = 63/169 (37%), Gaps = 27/169 (15%)

Query: 139 ELPERL-QCPNLQLFLLFR---QGYGPVQISDLFFEGTEELKVLSLIGIHFS-SLPSSLG 193
            +P  L     L+   L+    +G  P ++  +     + L+ L L     +  +PS L 
Sbjct: 433 TIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYV-----KTLETLILDFNDLTGEIPSGLS 487

Query: 194 RLINLQTLCLDWCQLEDV--AAIGQLKKLEILNLADSNIE-QLPLEIGQLTGLRLLDLTN 250
              NL  + L   +L       IG+L+ L IL L++++    +P E+G    L  LDL  
Sbjct: 488 NCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNT 547

Query: 251 CWSLQVIAPNVIS-----KLSRLEELYMDNSFSGWEKVEGGSNASLVEL 294
                    N+ +      + +       N  +G   V   ++    E 
Sbjct: 548 ---------NLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKEC 587

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 59.2 bits (144), Expect = 1e-09
 Identities = 31/147 (21%), Positives = 50/147 (34%), Gaps = 14/147 (9%)

Query: 139 ELPERLQCPNLQLFLLFRQG-YGPVQISDLFFEGTEELKVLSLIGIHFSSLPSSLGRLIN 197
                  C  L+   +      G V +S         L+ L +   +FS+    LG    
Sbjct: 170 GWVLSDGCGELKHLAISGNKISGDVDVSRC-----VNLEFLDVSSNNFSTGIPFLGDCSA 224

Query: 198 LQTLCLDWCQLEDV--AAIGQLKKLEILNLADSNIE-QLPLEIGQLTGLRLLDLTNCWSL 254
           LQ L +   +L      AI    +L++LN++ +     +P     L  L+ L L      
Sbjct: 225 LQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLP--LKSLQYLSLAEN-KF 281

Query: 255 Q-VIAPNVISKLSRLEELYM-DNSFSG 279
              I   +      L  L +  N F G
Sbjct: 282 TGEIPDFLSGACDTLTGLDLSGNHFYG 308

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 58.0 bits (141), Expect = 3e-09
 Identities = 25/114 (21%), Positives = 46/114 (40%), Gaps = 9/114 (7%)

Query: 175 LKVLSLIGIHFSSLPSSLGRLINLQTLCLDWCQLE----DVAAIGQLKKLEILNLADSNI 230
           L+ L L   H +   S      +L +L L    L      + ++G    L+ LN++ + +
Sbjct: 79  LESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTL 138

Query: 231 E-QLPLEIG-QLTGLRLLDLTNCW-SLQVIAP-NVISKLSRLEELYM-DNSFSG 279
           +    +  G +L  L +LDL+    S   +    +      L+ L +  N  SG
Sbjct: 139 DFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISG 192

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 53.0 bits (128), Expect = 1e-07
 Identities = 37/155 (23%), Positives = 59/155 (38%), Gaps = 20/155 (12%)

Query: 139 ELPERL--QCPNLQLFLLFR---QGYGPVQISDLFFEGTEELKVLSLIGIHFS-SLP-SS 191
           E+P+ L   C  L    L      G  P             L+ L+L   +FS  LP  +
Sbjct: 284 EIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSC-----SLLESLALSSNNFSGELPMDT 338

Query: 192 LGRLINLQTLCLDWCQLEDV--AAIGQLK-KLEILNLADSNIE-QLPLEIGQ--LTGLRL 245
           L ++  L+ L L + +       ++  L   L  L+L+ +N    +   + Q     L+ 
Sbjct: 339 LLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQE 398

Query: 246 LDLTNCWSLQVIAPNVISKLSRLEELYM-DNSFSG 279
           L L N        P  +S  S L  L++  N  SG
Sbjct: 399 LYLQNN-GFTGKIPPTLSNCSELVSLHLSFNYLSG 432

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 50.7 bits (122), Expect = 6e-07
 Identities = 21/122 (17%), Positives = 42/122 (34%), Gaps = 10/122 (8%)

Query: 165 SDLFFEGTEELKVLSLIGIHFS-SLPSSLGRLINLQTLCLDWCQL--EDVAAIGQLKKLE 221
             +  +G ++    +   + F       L RL       +                  + 
Sbjct: 576 VYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMM 635

Query: 222 ILNLADSNIE-QLPLEIGQLTGLRLLDLT-NCWSLQ-VIAPNVISKLSRLEELYM-DNSF 277
            L+++ + +   +P EIG +  L +L+L  N   +   I P+ +  L  L  L +  N  
Sbjct: 636 FLDMSYNMLSGYIPKEIGSMPYLFILNLGHN--DISGSI-PDEVGDLRGLNILDLSSNKL 692

Query: 278 SG 279
            G
Sbjct: 693 DG 694

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 50.7 bits (122), Expect = 6e-07
 Identities = 26/117 (22%), Positives = 42/117 (35%), Gaps = 12/117 (10%)

Query: 191 SLGRLI--NLQTLCLDWCQLEDVAAIGQLKKLEILNLADSNIEQLPLEIGQLTGLRLLDL 248
              ++   +L +  L+       +++  L  LE L L++S+I            L  LDL
Sbjct: 48  RDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDL 107

Query: 249 TNCW-SLQVIAPNVISKLSRLEELYM-DNSFSGWEKVEGGSNASLVELKRLTKLTTL 303
           +    S  V     +   S L+ L +  N+     KV GG          L  L  L
Sbjct: 108 SRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLK--------LNSLEVL 156

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 66.6 bits (163), Expect = 2e-12
 Identities = 42/180 (23%), Positives = 73/180 (40%), Gaps = 25/180 (13%)

Query: 130 ISLPQRNIQELPERLQCPNLQLFLLFRQGYGPVQISDLF-FEGTEELKVLSLIGIHFSSL 188
           I     +I+ +      PN+    L        +++D+      + L  L L       L
Sbjct: 51  IIANNSDIKSVQGIQYLPNVTKLFLNGN-----KLTDIKPLANLKNLGWLFLDENKVKDL 105

Query: 189 PSSLGRLINLQTLCLDWCQLEDVAAIGQLKKLEILNLADSNIEQLPLEIGQLTGLRLLDL 248
            SSL  L  L++L L+   + D+  +  L +LE L L ++ I  +   + +LT L  L L
Sbjct: 106 -SSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDIT-VLSRLTKLDTLSL 163

Query: 249 TNCWSLQVIAPNVISKLSRLEELYMDNSFSGWEKVEGGSN--ASLVELKRLTKLTTLEIE 306
            +   +  I P  ++ L++L+ LY+              N  + L  L  L  L  LE+ 
Sbjct: 164 EDN-QISDIVP--LAGLTKLQNLYLSK------------NHISDLRALAGLKNLDVLELF 208

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 58.9 bits (143), Expect = 7e-10
 Identities = 29/114 (25%), Positives = 57/114 (50%), Gaps = 6/114 (5%)

Query: 163 QISDL-FFEGTEELKVLSLIGIHFSSLPSSLGRLINLQTLCLDWCQLEDVAAIGQLKKLE 221
           ++ DL   +  ++LK LSL     S + + L  L  L++L L   ++ D+  + +L KL+
Sbjct: 101 KVKDLSSLKDLKKLKSLSLEHNGISDI-NGLVHLPQLESLYLGNNKITDITVLSRLTKLD 159

Query: 222 ILNLADSNIEQLPLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDN 275
            L+L D+ I  +   +  LT L+ L L+    +  +    ++ L  L+ L + +
Sbjct: 160 TLSLEDNQISDIV-PLAGLTKLQNLYLSKN-HISDLRA--LAGLKNLDVLELFS 209

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 50.1 bits (120), Expect = 4e-07
 Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 11/138 (7%)

Query: 136 NIQELPERLQCPNLQLFLLFRQGYGPVQISDL-FFEGTEELKVLSLIGIHFSSLPSSLGR 194
            I ++   +  P L+   L        +I+D+       +L  LSL     S +   L  
Sbjct: 123 GISDINGLVHLPQLESLYLGNN-----KITDITVLSRLTKLDTLSLEDNQISDI-VPLAG 176

Query: 195 LINLQTLCLDWCQLEDVAAIGQLKKLEILNLADSNIEQLPLE-IGQLTGLRLLDLTNCWS 253
           L  LQ L L    + D+ A+  LK L++L L        P+     L     +  T+   
Sbjct: 177 LTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDG-- 234

Query: 254 LQVIAPNVISKLSRLEEL 271
             ++ P +IS     E+ 
Sbjct: 235 -SLVTPEIISDDGDYEKP 251

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 66.6 bits (163), Expect = 2e-12
 Identities = 22/115 (19%), Positives = 40/115 (34%), Gaps = 4/115 (3%)

Query: 163 QISDLFFEGTEELKVLSLIG--IHFSSLPSSLGRLINLQTLCLDWCQLEDVAAIGQLKKL 220
            + DL       ++ L L    I   +          L+ L L +  + DV       KL
Sbjct: 134 MLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKL 193

Query: 221 EILNLADSNIEQLPLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDN 275
           + L+L+ + +  +  E     G+  + L N   L +I    +     LE   +  
Sbjct: 194 KTLDLSSNKLAFMGPEFQSAAGVTWISLRNN-KLVLI-EKALRFSQNLEHFDLRG 246

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 61.2 bits (149), Expect = 1e-10
 Identities = 22/131 (16%), Positives = 45/131 (34%), Gaps = 19/131 (14%)

Query: 163 QISDLFFEGTEELKVLSLIGIHFSSLP-SSLGRLINLQTLCLDWCQLEDVAAIGQLKKLE 221
           Q      +    +K L L G   S +  + L     L+ L L    L +   +  L  L 
Sbjct: 24  QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLR 83

Query: 222 ILNLADSNIEQLP-----------------LEIGQLTGLRLLDLTNCWSLQVIAPNVISK 264
            L+L ++ +++L                  +   +  G + + L N   + ++       
Sbjct: 84  TLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANN-KITMLRDLDEGC 142

Query: 265 LSRLEELYMDN 275
            SR++ L +  
Sbjct: 143 RSRVQYLDLKL 153

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 49.6 bits (119), Expect = 7e-07
 Identities = 12/77 (15%), Positives = 24/77 (31%), Gaps = 1/77 (1%)

Query: 175 LKVLSLIGIHFSSLPSSLGRLINLQTLCLDWCQLEDV-AAIGQLKKLEILNLADSNIEQL 233
           LK L L     + +         +  + L   +L  +  A+   + LE  +L  +     
Sbjct: 193 LKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCG 252

Query: 234 PLEIGQLTGLRLLDLTN 250
            L        R+  +  
Sbjct: 253 TLRDFFSKNQRVQTVAK 269

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 49.2 bits (118), Expect = 9e-07
 Identities = 20/122 (16%), Positives = 42/122 (34%), Gaps = 19/122 (15%)

Query: 187 SLPSSLGRLINLQTLCLDWCQLEDV--AAIGQLKKLEILNLADSNIEQLPLE-IGQLTGL 243
           ++          +   +    L+    +       ++ L+L+ + + Q+    +   T L
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 244 RLLDLTNCWSLQVIAPNVISKLSRLEELYMDNSFSGWEKVEGGSNASLVELKRLTKLTTL 303
            LL+L++   L       +  LS L  L ++N            N  + EL     + TL
Sbjct: 61  ELLNLSSN-VLYETLD--LESLSTLRTLDLNN------------N-YVQELLVGPSIETL 104

Query: 304 EI 305
             
Sbjct: 105 HA 106

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 46.9 bits (112), Expect = 6e-06
 Identities = 16/141 (11%), Positives = 44/141 (31%), Gaps = 8/141 (5%)

Query: 136 NIQELPERLQCPNLQLFLLFRQGYGPVQISDL--FFEGTEELKVLSLIGIHFSSLPSSLG 193
            I ++  ++    L+   L        +++ +   F+    +  +SL       +  +L 
Sbjct: 180 FIYDVKGQVVFAKLKTLDLSSN-----KLAFMGPEFQSAAGVTWISLRNNKLVLIEKALR 234

Query: 194 RLINLQTLCLDWCQLE-DVAAIGQLKKLEILNLADSNIEQLPLEIGQLTGLRLLDLTNCW 252
              NL+   L               K   +  +A   +++L  +  +   +  L     +
Sbjct: 235 FSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAY 294

Query: 253 SLQVIAPNVISKLSRLEELYM 273
             + +      +L  L   + 
Sbjct: 295 CCEDLPAPFADRLIALGHHHH 315

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 67.8 bits (166), Expect = 2e-12
 Identities = 17/123 (13%), Positives = 43/123 (34%), Gaps = 13/123 (10%)

Query: 187 SLPSSLGRLINLQTLCLDWCQLEDV---AAIGQLKKLEILNLADSNIEQLPLEIGQLTGL 243
              +       +Q + + +  L+      ++ ++KKL +L    + +E      G    L
Sbjct: 296 QALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKL 355

Query: 244 RLLDLTNCWSLQVIAPNVISKLSRLEELYM-DNSFSGWEKVEGGSNASLVELKRLTKLTT 302
             L+L     +  I  N      ++E L    N              ++ + K ++ ++ 
Sbjct: 356 ASLNLAYN-QITEIPANFCGFTEQVENLSFAHNKLK--------YIPNIFDAKSVSVMSA 406

Query: 303 LEI 305
           ++ 
Sbjct: 407 IDF 409

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 67.8 bits (166), Expect = 2e-12
 Identities = 19/142 (13%), Positives = 48/142 (33%), Gaps = 16/142 (11%)

Query: 175 LKVLSLIGIHFSSLPSSL-GRLINLQTLCLDWCQLE---DVAAIGQLKKLEILNLAD--- 227
           L  L+L     + +P++  G    ++ L     +L+   ++     +  +  ++ +    
Sbjct: 355 LASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEI 414

Query: 228 -----SNIEQLPLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYM-DNSFSGWE 281
                 N + L     +   +  ++L+N   +      + S  S L  + +  N  +   
Sbjct: 415 GSVDGKNFDPLDPTPFKGINVSSINLSNN-QISKFPKELFSTGSPLSSINLMGNMLTEIP 473

Query: 282 KVEGGSNASLVELKRLTKLTTL 303
           K            K    LT++
Sbjct: 474 KNSLKD--ENENFKNTYLLTSI 493

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 60.8 bits (148), Expect = 3e-10
 Identities = 15/110 (13%), Positives = 35/110 (31%), Gaps = 9/110 (8%)

Query: 179 SLIGIHFSSLPSSLGRLINLQTLCLDWCQLEDV---AAIGQLKKLEILNLADSNIEQLPL 235
            +          +      L ++ L + +L  +        L  L  ++L+ ++  + P 
Sbjct: 471 EIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPT 530

Query: 236 EIGQLTGLRLLDLTNCWSLQV-----IAPNVISKLSRLEELYM-DNSFSG 279
           +    + L+   + N    Q        P  I+    L +L +  N    
Sbjct: 531 QPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRK 580

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 56.6 bits (137), Expect = 8e-09
 Identities = 18/141 (12%), Positives = 42/141 (29%), Gaps = 16/141 (11%)

Query: 164 ISDLFFEGTEELKVLSLIGIHFSSLPSSLGRLINLQTLCLDWCQLEDV--------AAIG 215
             D        L  + L    FS  P+       L+   +   +              I 
Sbjct: 504 SDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGIT 563

Query: 216 QLKKLEILNLADSNIEQLPLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDN 275
               L  L +  ++I ++  +I     + +LD+ +      I  + +          +  
Sbjct: 564 LCPSLTQLQIGSNDIRKVNEKI--TPNISVLDIKDN-PNISIDLSYVCPYIEAGMYML-- 618

Query: 276 SFSGWEKVEGGSNASLVELKR 296
            +   + + G      +++KR
Sbjct: 619 FYDKTQDIRGC---DALDIKR 636

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 50.8 bits (122), Expect = 6e-07
 Identities = 21/167 (12%), Positives = 44/167 (26%), Gaps = 34/167 (20%)

Query: 159 YGPVQISDLFFEGTEELKVLSLIGIHFSSLPSSLGRLINLQTLCLDWCQLEDV--AAIGQ 216
           +GP  IS    +  ++   +          P       +L   C++    +     +   
Sbjct: 124 FGPKGISANMSDEQKQKMRMHYQKTFVDYDP--REDFSDLIKDCINSDPQQKSIKKSSRI 181

Query: 217 LKKLEILNLADSNIEQLPLEIGQLTGLRLLDLTNC------------------WSLQVIA 258
             K   +    +NI  +   + +LT LR   + N                          
Sbjct: 182 TLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTE 241

Query: 259 PNVISKLSRLEELYM-DNSFSGWEKVEGGSNASL-VELKRLTKLTTL 303
                 L  L ++ + +                L   LK L ++  +
Sbjct: 242 DLKWDNLKDLTDVEVYNCPNLT----------KLPTFLKALPEMQLI 278

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 65.9 bits (161), Expect = 3e-12
 Identities = 28/156 (17%), Positives = 55/156 (35%), Gaps = 18/156 (11%)

Query: 163 QISDLF-FEGTEELKVLSLIGIHFSSLPSSLGRLINLQTLCLDWCQLEDVAAIGQLKKLE 221
            I+ +F          ++    + +    +   L  + TL      +  +  +  L  L 
Sbjct: 8   AINVIFPDPALANAIKIAAGKSNVTDT-VTQADLDGITTLSAFGTGVTTIEGVQYLNNLI 66

Query: 222 ILNLADSNIEQLPLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYM-DNSFSGW 280
            L L D+ I  L   +  LT +  L+L+    L+ ++   I+ L  ++ L +     +  
Sbjct: 67  GLELKDNQITDLA-PLKNLTKITELELSGN-PLKNVSA--IAGLQSIKTLDLTSTQITDV 122

Query: 281 EKVEG---------GSNA--SLVELKRLTKLTTLEI 305
             + G           N   ++  L  LT L  L I
Sbjct: 123 TPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSI 158

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 64.3 bits (157), Expect = 1e-11
 Identities = 33/180 (18%), Positives = 70/180 (38%), Gaps = 25/180 (13%)

Query: 130 ISLPQRNIQELPERLQCPNLQLFLLFRQGYGPVQISDLF-FEGTEELKVLSLIGIHFSSL 188
           + L    I +L        +    L         + ++    G + +K L L     + +
Sbjct: 68  LELKDNQITDLAPLKNLTKITELELSGN-----PLKNVSAIAGLQSIKTLDLTSTQITDV 122

Query: 189 PSSLGRLINLQTLCLDWCQLEDVAAIGQLKKLEILNLADSNIEQLPLEIGQLTGLRLLDL 248
            + L  L NLQ L LD  Q+ +++ +  L  L+ L++ ++ +  L   +  L+ L  L  
Sbjct: 123 -TPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLT-PLANLSKLTTLKA 180

Query: 249 TNCWSLQVIAPNVISKLSRLEELYMDNSFSGWEKVEGGSN--ASLVELKRLTKLTTLEIE 306
            +   +  I+P  ++ L  L E+++ N            N  + +  L   + L  + + 
Sbjct: 181 DDN-KISDISP--LASLPNLIEVHLKN------------NQISDVSPLANTSNLFIVTLT 225

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 62.4 bits (152), Expect = 5e-11
 Identities = 32/141 (22%), Positives = 58/141 (41%), Gaps = 11/141 (7%)

Query: 136 NIQELPERLQCPNLQLFLLFRQGYGPVQISDL-FFEGTEELKVLSLIGIHFSSLPSSLGR 194
            ++ +       +++   L        QI+D+    G   L+VL L     +++ S L  
Sbjct: 96  PLKNVSAIAGLQSIKTLDLTST-----QITDVTPLAGLSNLQVLYLDLNQITNI-SPLAG 149

Query: 195 LINLQTLCLDWCQLEDVAAIGQLKKLEILNLADSNIEQLPLEIGQLTGLRLLDLTNCWSL 254
           L NLQ L +   Q+ D+  +  L KL  L   D+ I  +   +  L  L  + L N    
Sbjct: 150 LTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDIS-PLASLPNLIEVHLKNN--- 205

Query: 255 QVIAPNVISKLSRLEELYMDN 275
           Q+   + ++  S L  + + N
Sbjct: 206 QISDVSPLANTSNLFIVTLTN 226

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 49.3 bits (118), Expect = 9e-07
 Identities = 32/129 (24%), Positives = 47/129 (36%), Gaps = 9/129 (6%)

Query: 136 NIQELPERLQCPNLQLFLLFRQGYGPVQISDL-FFEGTEELKVLSLIGIHFSSLPSSLGR 194
            I  +       NLQ   +        Q+SDL       +L  L       S + S L  
Sbjct: 140 QITNISPLAGLTNLQYLSIGNA-----QVSDLTPLANLSKLTTLKADDNKISDI-SPLAS 193

Query: 195 LINLQTLCLDWCQLEDVAAIGQLKKLEILNLADSNIEQLPLEIGQLTGLRLLDLTNCWSL 254
           L NL  + L   Q+ DV+ +     L I+ L +  I   P+       L + ++    S 
Sbjct: 194 LPNLIEVHLKNNQISDVSPLANTSNLFIVTLTNQTITNQPVFY--NNNLVVPNVVKGPSG 251

Query: 255 QVIAPNVIS 263
             IAP  IS
Sbjct: 252 APIAPATIS 260

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 67.0 bits (164), Expect = 4e-12
 Identities = 28/105 (26%), Positives = 41/105 (39%), Gaps = 5/105 (4%)

Query: 175 LKVLSLIGIHFSSLPS-SLGRLINLQTLCLDWCQLEDV--AAIGQLKKLEILNLADSNIE 231
            K L L       L S S      LQ L L  C+++ +   A   L  L  L L  + I+
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89

Query: 232 QLPLEI-GQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDN 275
            L L     L+ L+ L      +L  +    I  L  L+EL + +
Sbjct: 90  SLALGAFSGLSSLQKLVAVET-NLASLENFPIGHLKTLKELNVAH 133

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 59.7 bits (145), Expect = 8e-10
 Identities = 55/292 (18%), Positives = 98/292 (33%), Gaps = 40/292 (13%)

Query: 136 NIQELPERL--QCPNLQLFLLFRQGYGPVQISDL---FFEGTEELKVLSLIGIHFSSLPS 190
            ++ L        P LQ+  L R      +I  +    ++    L  L L G    SL  
Sbjct: 39  PLRHLGSYSFFSFPELQVLDLSRC-----EIQTIEDGAYQSLSHLSTLILTGNPIQSLAL 93

Query: 191 -SLGRLINLQTLCLDWCQLEDVA--AIGQLKKLEILNLADSNIEQLPL--EIGQLTGLRL 245
            +   L +LQ L      L  +    IG LK L+ LN+A + I+   L      LT L  
Sbjct: 94  GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEH 153

Query: 246 LDLTNCWSLQVIAPNVISKLSRLEELYMDNSFSG--WEKVEGGSNASLVELKRLTKLTTL 303
           LDL++   +Q I    +  L ++  L +    S      ++ G+   +       +L  L
Sbjct: 154 LDLSSN-KIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-------RLHKL 205

Query: 304 EIEVRDAEILLPDFVSVELQRYRIRIGDKLEYEIDQLLVKSEALRLMMLKGLEKVSILQE 363
            +      + +       L    +    +L     +     E      L+GL  ++ ++E
Sbjct: 206 TLRNNFDSLNVMKTCIQGLAGLEVH---RLVLGEFRNEGNLEKFDKSALEGLCNLT-IEE 261

Query: 364 NDGTKM---------LLQRTEDLWLVKLEGVQNVVHELDDGEGFPRLKHLHV 406
                +         L     ++    L  V      + D       +HL +
Sbjct: 262 FRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTI--ERVKDFSYNFGWQHLEL 311

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 59.0 bits (143), Expect = 1e-09
 Identities = 33/169 (19%), Positives = 57/169 (33%), Gaps = 30/169 (17%)

Query: 136 NIQELPERLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPSSLGRL 195
                   +  P+L+   L R G            GT  LK L L      ++ S+   L
Sbjct: 336 KGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGL 395

Query: 196 INLQTLCLDWCQLEDVAAIG---QLKKLEILNLADSNIEQLPLEI--------------- 237
             L+ L      L+ ++       L+ L  L+++ ++       I               
Sbjct: 396 EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN 455

Query: 238 -----------GQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDN 275
                       +L  L  LDL+ C  L+ ++P   + LS L+ L M +
Sbjct: 456 SFQENFLPDIFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMAS 503

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 57.8 bits (140), Expect = 3e-09
 Identities = 26/149 (17%), Positives = 48/149 (32%), Gaps = 10/149 (6%)

Query: 131 SLPQRNIQELPERLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPS 190
           SL    I+ + +       Q   L        +         + LK L+       +  S
Sbjct: 288 SLVSVTIERVKDFSYNFGWQHLELVN-----CKFGQFPTLKLKSLKRLTFTSNKGGNAFS 342

Query: 191 SLGRLINLQTLCLDWCQLEDVA----AIGQLKKLEILNLADSNIEQLPLEIGQLTGLRLL 246
            +  L +L+ L L    L        +      L+ L+L+ + +  +      L  L  L
Sbjct: 343 EVD-LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHL 401

Query: 247 DLTNCWSLQVIAPNVISKLSRLEELYMDN 275
           D  +    Q+   +V   L  L  L + +
Sbjct: 402 DFQHSNLKQMSEFSVFLSLRNLIYLDISH 430

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 57.0 bits (138), Expect = 6e-09
 Identities = 20/113 (17%), Positives = 48/113 (42%), Gaps = 6/113 (5%)

Query: 168 FFEGTEELKVLSLIGIHFSSLPSS-LGRLINLQTLCLDWCQLEDV---AAIGQLKKLEIL 223
            F     L  L +   H     +     L +L+ L +     ++        +L+ L  L
Sbjct: 416 VFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL 475

Query: 224 NLADSNIEQLPLEI-GQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDN 275
           +L+   +EQL       L+ L++L++ +   L+ +   +  +L+ L+++++  
Sbjct: 476 DLSQCQLEQLSPTAFNSLSSLQVLNMASN-QLKSVPDGIFDRLTSLQKIWLHT 527

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 55.9 bits (135), Expect = 1e-08
 Identities = 45/281 (16%), Positives = 91/281 (32%), Gaps = 25/281 (8%)

Query: 136 NIQELPERL--QCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIG--IHFSSLPSS 191
            IQ L         +LQ  +          + +      + LK L++    I    LP  
Sbjct: 87  PIQSLALGAFSGLSSLQKLVAVETNL--ASLENFPIGHLKTLKELNVAHNLIQSFKLPEY 144

Query: 192 LGRLINLQTLCLDWCQLEDVA--AIGQLKKLEI----LNLADSNIEQLPLEIGQLTGLRL 245
              L NL+ L L   +++ +    +  L ++ +    L+L+ + +  +     +   L  
Sbjct: 145 FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHK 204

Query: 246 LDLTNCWSLQVIAPNVISKLSRLEELY-MDNSFSGWEKVEGGSNASLVELKRLTKLTTLE 304
           L L N +    +    I  L+ LE    +   F     +E    ++   L+ L  LT  E
Sbjct: 205 LTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSA---LEGLCNLTIEE 261

Query: 305 IEVRDAEILLPDFVSVELQRYRIRIGDKLEYEIDQLLVKSEALRLMMLKGLEKVSILQEN 364
             +   +  L D + +      +     +   I+++   S       L    ++   +  
Sbjct: 262 FRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHL----ELVNCKFG 317

Query: 365 DGTKMLLQRTEDLWLVKLEGVQNVVHELDDGEGFPRLKHLH 405
               + L+  + L         N           P L+ L 
Sbjct: 318 QFPTLKLKSLKRLTF-----TSNKGGNAFSEVDLPSLEFLD 353

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 50.9 bits (122), Expect = 5e-07
 Identities = 29/92 (31%), Positives = 44/92 (47%), Gaps = 5/92 (5%)

Query: 164 ISDLFFEGTEELKVLSLIG--IHFSSLPSSLGRLINLQTLCLDWCQLEDV--AAIGQLKK 219
             +  F G   L+VL + G     + LP     L NL  L L  CQLE +   A   L  
Sbjct: 436 AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSS 495

Query: 220 LEILNLADSNIEQLPLEI-GQLTGLRLLDLTN 250
           L++LN+A + ++ +P  I  +LT L+ + L  
Sbjct: 496 LQVLNMASNQLKSVPDGIFDRLTSLQKIWLHT 527

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 66.3 bits (162), Expect = 4e-12
 Identities = 28/115 (24%), Positives = 49/115 (42%), Gaps = 4/115 (3%)

Query: 164 ISDLFFEGTEELKVLSLIGI-HFSSLPS-SLGRLINLQTLCLDWCQLEDVAAIGQLKKLE 221
           I    F     L+ L L  +   S +   +   L NL+ L L  C L ++  +  L KL+
Sbjct: 151 IPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLD 210

Query: 222 ILNLADSNIEQLPLEI-GQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDN 275
            L+L+ +++  +       L  L+ L +     +QVI  N    L  L E+ + +
Sbjct: 211 ELDLSGNHLSAIRPGSFQGLMHLQKLWMIQS-QIQVIERNAFDNLQSLVEINLAH 264

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 65.2 bits (159), Expect = 1e-11
 Identities = 38/148 (25%), Positives = 58/148 (39%), Gaps = 16/148 (10%)

Query: 163 QISDLFFEGTEELKVLSLIGIHFSSLPS-SLGRLINLQTLCLDWCQLEDVA--AIGQLKK 219
            I    F+    L++L L   H  ++   +   L NL TL L   +L  +   A   L K
Sbjct: 78  IIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSK 137

Query: 220 LEILNLADSNIEQLPLEI-GQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYM-DNSF 277
           L+ L L ++ IE +P     ++  LR LDL     L  I+      LS L  L +   + 
Sbjct: 138 LKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNL 197

Query: 278 SGWEKVEGGSNASLVELKRLTKLTTLEI 305
                        +  L  L KL  L++
Sbjct: 198 R-----------EIPNLTPLIKLDELDL 214

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 64.2 bits (157), Expect = 8e-12
 Identities = 28/116 (24%), Positives = 37/116 (31%), Gaps = 5/116 (4%)

Query: 164 ISDLFFEGTEELKVLSLIGIHFSSLPS-SLGRLINLQTLCLDWCQLEDVA--AIGQLKKL 220
           +    F G   L  L L       L       L  LQ L L    L+ +       L  L
Sbjct: 96  VDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNL 155

Query: 221 EILNLADSNIEQLPLEI-GQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDN 275
             L L  + I  +P      L  L  L L     +  + P+    L RL  LY+  
Sbjct: 156 THLFLHGNRISSVPERAFRGLHSLDRLLLHQN-RVAHVHPHAFRDLGRLMTLYLFA 210

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 48.1 bits (115), Expect = 2e-06
 Identities = 25/118 (21%), Positives = 46/118 (38%), Gaps = 9/118 (7%)

Query: 184 HFSSLPSSLGRLINLQTLCLDWCQLEDV--AAIGQLKKLEILNLADSNIEQLPLEI-GQL 240
              ++P  +      Q + L   ++  V  A+    + L IL L  + + ++       L
Sbjct: 22  GLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGL 79

Query: 241 TGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMD-NSFSGWEKVEGGSNASLVELKRL 297
             L  LDL++   L+ + P     L RL  L++D        ++  G    L  L+ L
Sbjct: 80  ALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ---ELGPGLFRGLAALQYL 134

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 45.4 bits (108), Expect = 2e-05
 Identities = 27/91 (29%), Positives = 38/91 (41%), Gaps = 4/91 (4%)

Query: 164 ISDLFFEGTEELKVLSLIGIHFSSLPS-SLGRLINLQTLCLDWCQLEDV--AAIGQLKKL 220
           + D  F     L  L L G   SS+P  +   L +L  L L   ++  V   A   L +L
Sbjct: 144 LPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRL 203

Query: 221 EILNLADSNIEQLPLEI-GQLTGLRLLDLTN 250
             L L  +N+  LP E    L  L+ L L +
Sbjct: 204 MTLYLFANNLSALPTEALAPLRALQYLRLND 234

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 64.5 bits (158), Expect = 9e-12
 Identities = 28/145 (19%), Positives = 56/145 (38%), Gaps = 15/145 (10%)

Query: 143 RLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGI-HFS-SLPSSLGRLINLQT 200
           R+   +L    L +    P  +++L +     L  L + GI +    +P ++ +L  L  
Sbjct: 51  RVNNLDLSGLNLPKPYPIPSSLANLPY-----LNFLYIGGINNLVGPIPPAIAKLTQLHY 105

Query: 201 LCLDWCQLEDV--AAIGQLKKLEILNLADSNIE-QLPLEIGQLTGLRLLDLTNCWSLQ-V 256
           L +    +       + Q+K L  L+ + + +   LP  I  L  L  +       +   
Sbjct: 106 LYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGN-RISGA 164

Query: 257 IAPNVISKLSRL-EELYM-DNSFSG 279
           I P+     S+L   + +  N  +G
Sbjct: 165 I-PDSYGSFSKLFTSMTISRNRLTG 188

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 51.8 bits (125), Expect = 1e-07
 Identities = 21/79 (26%), Positives = 32/79 (40%), Gaps = 8/79 (10%)

Query: 178 LSLIGIHFS------SLPSSLGRLINLQTLCLDWCQLE-DVAAIGQLKKLEILNLADSNI 230
           L+L  +  S            G   N Q + L    L  D+  +G  K L  L+L ++ I
Sbjct: 197 LNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRI 256

Query: 231 E-QLPLEIGQLTGLRLLDL 248
              LP  + QL  L  L++
Sbjct: 257 YGTLPQGLTQLKFLHSLNV 275

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 50.2 bits (121), Expect = 4e-07
 Identities = 22/98 (22%), Positives = 41/98 (41%), Gaps = 15/98 (15%)

Query: 213 AIGQLKKLEILNLADSNIE---QLPLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLE 269
              Q  ++  L+L+  N+     +P  +  L  L  L +    +L    P  I+KL++L 
Sbjct: 45  TDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLH 104

Query: 270 ELYM-DNSFSGWEKVEGGSNASL-VELKRLTKLTTLEI 305
            LY+   + SG          ++   L ++  L TL+ 
Sbjct: 105 YLYITHTNVSG----------AIPDFLSQIKTLVTLDF 132

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 46.8 bits (112), Expect = 6e-06
 Identities = 30/151 (19%), Positives = 50/151 (33%), Gaps = 18/151 (11%)

Query: 139 ELPERL-QCPNLQLFLLFR---QGYGPVQISDLFFEGTEELKVLSLIGIHFS-SLPSSLG 193
            +P+ L Q   L           G  P  IS L       L  ++  G   S ++P S G
Sbjct: 116 AIPDFLSQIKTLVTLDFSYNALSGTLPPSISSL-----PNLVGITFDGNRISGAIPDSYG 170

Query: 194 RLINLQT-LCLDWCQLEDV--AAIGQLKKLEILNLADSNIE-QLPLEIGQLTGLRLLDLT 249
               L T + +   +L          L  L  ++L+ + +E    +  G     + + L 
Sbjct: 171 SFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLA 229

Query: 250 NCWSLQVIAPNVISKLSRLEELYM-DNSFSG 279
              SL       +     L  L + +N   G
Sbjct: 230 KN-SLAFDLGK-VGLSKNLNGLDLRNNRIYG 258

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 64.4 bits (157), Expect = 1e-11
 Identities = 33/135 (24%), Positives = 55/135 (40%), Gaps = 10/135 (7%)

Query: 175 LKVLSLIGIHFSSLPSS-LGRLINLQTLCLDWCQLEDVAAIGQLKKLEILNLADSNIEQL 233
             +L L      +   + L     L  L LD  +L  +   G L  L  L+L+ + ++ L
Sbjct: 33  TTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSL 92

Query: 234 PLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMD-NSFSGWEKVEGGSNASLV 292
           PL    L  L +LD++    L  +    +  L  L+ELY+  N       +  G      
Sbjct: 93  PLLGQTLPALTVLDVSFN-RLTSLPLGALRGLGELQELYLKGNELK---TLPPGLLTPTP 148

Query: 293 ELKRLT----KLTTL 303
           +L++L+     LT L
Sbjct: 149 KLEKLSLANNNLTEL 163

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 62.0 bits (151), Expect = 5e-11
 Identities = 26/117 (22%), Positives = 47/117 (40%), Gaps = 5/117 (4%)

Query: 163 QISDL-FFEGTEELKVLSLIGIHFSSLPSSLGRLINLQTLCLDWCQLEDVA--AIGQLKK 219
           +++ L        L  L L      SLP     L  L  L + + +L  +   A+  L +
Sbjct: 66  ELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGE 125

Query: 220 LEILNLADSNIEQLPLEI-GQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDN 275
           L+ L L  + ++ LP  +      L  L L N  +L  +   +++ L  L+ L +  
Sbjct: 126 LQELYLKGNELKTLPPGLLTPTPKLEKLSLANN-NLTELPAGLLNGLENLDTLLLQE 181

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 65.5 bits (160), Expect = 1e-11
 Identities = 26/115 (22%), Positives = 48/115 (41%), Gaps = 4/115 (3%)

Query: 164 ISDLFFEGTEELKVLSLIGI-HFSSLPS-SLGRLINLQTLCLDWCQLEDVAAIGQLKKLE 221
           I    F     L  L L  +     +   +   L NL+ L L  C ++D+  +  L  LE
Sbjct: 162 IPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLE 221

Query: 222 ILNLADSNIEQLPLE-IGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDN 275
            L ++ ++  ++       L+ L+ L + N   + +I  N    L+ L EL + +
Sbjct: 222 ELEMSGNHFPEIRPGSFHGLSSLKKLWVMNS-QVSLIERNAFDGLASLVELNLAH 275

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 60.9 bits (148), Expect = 3e-10
 Identities = 41/149 (27%), Positives = 66/149 (44%), Gaps = 14/149 (9%)

Query: 164 ISDLFFEGTEELKVLSLIGIHFSSLPS-SLGRLINLQTLCLDWC-QLEDVA--AIGQLKK 219
           I    FE   +L+ L L      S+PS +  R+ +L  L L    +LE ++  A   L  
Sbjct: 138 IPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFN 197

Query: 220 LEILNLADSNIEQLPLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMD-NSFS 278
           L+ LNL   NI+ +P  +  L GL  L+++       I P     LS L++L++  +  S
Sbjct: 198 LKYLNLGMCNIKDMP-NLTPLVGLEELEMSG-NHFPEIRPGSFHGLSSLKKLWVMNSQVS 255

Query: 279 GWEKVEGGSNASLVELKRLT----KLTTL 303
               +E  +   L  L  L      L++L
Sbjct: 256 ---LIERNAFDGLASLVELNLAHNNLSSL 281

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 48.6 bits (116), Expect = 2e-06
 Identities = 28/128 (21%), Positives = 49/128 (38%), Gaps = 10/128 (7%)

Query: 174 ELKVLSLIGIHFSSLPSSLGRLINLQTLCLDWCQLEDV--AAIGQLKKLEILNLADSNIE 231
           +   +       S +P  +    N + L L    ++ +       L  LE+L L  ++I 
Sbjct: 55  QFSKVVCTRRGLSEVPQGI--PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR 112

Query: 232 QLPLEI-GQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMD-NSFSGWEKVEGGSNA 289
           Q+ +     L  L  L+L +   L VI       LS+L EL++  N       +   +  
Sbjct: 113 QIEVGAFNGLASLNTLELFDN-WLTVIPSGAFEYLSKLRELWLRNNPIE---SIPSYAFN 168

Query: 290 SLVELKRL 297
            +  L RL
Sbjct: 169 RVPSLMRL 176

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 65.4 bits (160), Expect = 1e-11
 Identities = 29/131 (22%), Positives = 42/131 (32%), Gaps = 11/131 (8%)

Query: 175 LKVLSLIGIHFSSLP-SSLGRLINLQTLCLDWCQLEDV--AAIGQLKKLEILNLADSNIE 231
            K + L       L   S      LQ L L  C++E +   A   L  L  L L  + I+
Sbjct: 34  TKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQ 93

Query: 232 QLPLE-IGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYM-DNSFSGWEKVEGGSNA 289
                    LT L  L       L  +    I +L  L++L +  N     +       A
Sbjct: 94  SFSPGSFSGLTSLENLVAVET-KLASLESFPIGQLITLKKLNVAHNFIHSCK-----LPA 147

Query: 290 SLVELKRLTKL 300
               L  L  +
Sbjct: 148 YFSNLTNLVHV 158

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 63.1 bits (154), Expect = 6e-11
 Identities = 38/176 (21%), Positives = 60/176 (34%), Gaps = 21/176 (11%)

Query: 136 NIQELPE----RLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLP-- 189
            +          L   +L+   L   G     I    F G EEL+ L         +   
Sbjct: 361 ALSFSGCCSYSDLGTNSLRHLDLSFNG---AIIMSANFMGLEELQHLDFQHSTLKRVTEF 417

Query: 190 SSLGRLINLQTLCLDWCQLEDV--AAIGQLKKLEILNLADSNIEQLPLE--IGQLTGLRL 245
           S+   L  L  L + +   +         L  L  L +A ++ +   L       T L  
Sbjct: 418 SAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTF 477

Query: 246 LDLTNCWSLQVIAPNVISKLSRLEELYM-DNSFSGWEKVEGGSNASLVELKRLTKL 300
           LDL+ C  L+ I+  V   L RL+ L M  N+           ++   +L  L+ L
Sbjct: 478 LDLSKC-QLEQISWGVFDTLHRLQLLNMSHNNLLFL------DSSHYNQLYSLSTL 526

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 60.8 bits (148), Expect = 4e-10
 Identities = 30/144 (20%), Positives = 49/144 (34%), Gaps = 4/144 (2%)

Query: 136 NIQELPERLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPSSLGRL 195
                 +++  P+L    L R              GT  L+ L L       + ++   L
Sbjct: 339 KGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGL 398

Query: 196 INLQTLCLDWCQLEDVA---AIGQLKKLEILNLADSNIEQLPLEI-GQLTGLRLLDLTNC 251
             LQ L      L+ V    A   L+KL  L+++ +N +     I   LT L  L +   
Sbjct: 399 EELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGN 458

Query: 252 WSLQVIAPNVISKLSRLEELYMDN 275
                   NV +  + L  L +  
Sbjct: 459 SFKDNTLSNVFANTTNLTFLDLSK 482

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 55.8 bits (135), Expect = 1e-08
 Identities = 33/116 (28%), Positives = 48/116 (41%), Gaps = 6/116 (5%)

Query: 163 QISDLFFEGTEELKVLSLIGIHFSSL-PSSLGRLINLQTLCLDWCQLEDV--AAIGQLKK 219
            I D  + G   L  L L G    S  P S   L +L+ L     +L  +    IGQL  
Sbjct: 70  TIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLIT 129

Query: 220 LEILNLADSNIEQLPL--EIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYM 273
           L+ LN+A + I    L      LT L  +DL+    +Q I  N +  L    ++ +
Sbjct: 130 LKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN-YIQTITVNDLQFLRENPQVNL 184

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 54.7 bits (132), Expect = 3e-08
 Identities = 29/180 (16%), Positives = 62/180 (34%), Gaps = 19/180 (10%)

Query: 136 NIQELPERL--QCPNLQLFLLFRQGYGPVQISDL---FFEGTEELKVLSLIG--IHFSSL 188
            IQ           +L+  +         +++ L          LK L++    IH   L
Sbjct: 91  PIQSFSPGSFSGLTSLENLVAVE-----TKLASLESFPIGQLITLKKLNVAHNFIHSCKL 145

Query: 189 PSSLGRLINLQTLCLDWCQLEDV--AAIGQLKKL----EILNLADSNIEQLPLEIGQLTG 242
           P+    L NL  + L +  ++ +    +  L++       L+++ + I+ +  +  Q   
Sbjct: 146 PAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIK 205

Query: 243 LRLLDLTNCWSLQVIAPNVISKLSRLEELYMD-NSFSGWEKVEGGSNASLVELKRLTKLT 301
           L  L L   ++   I    +  L+ L    +    F     +E    + +  L  +T   
Sbjct: 206 LHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDE 265

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 52.7 bits (127), Expect = 1e-07
 Identities = 27/147 (18%), Positives = 45/147 (30%), Gaps = 18/147 (12%)

Query: 163 QISDLFFEGTEELKVLSLIGIHFSSLPSSLGRLINLQTLCLDWCQLEDVAAIGQLKKLEI 222
            + D+        + LS+I       P+    L  L++L L   +         L  L  
Sbjct: 299 YLEDVPKHFK--WQSLSIIRCQLKQFPTLD--LPFLKSLTLTMNKGSISFKKVALPSLSY 354

Query: 223 LNLADSNIEQLP---LEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYM-DNSFS 278
           L+L+ + +               LR LDL+      +I       L  L+ L    ++  
Sbjct: 355 LDLSRNALSFSGCCSYSDLGTNSLRHLDLSFN--GAIIMSANFMGLEELQHLDFQHSTLK 412

Query: 279 GWEKVEGGSNASLVELKRLTKLTTLEI 305
                             L KL  L+I
Sbjct: 413 --------RVTEFSAFLSLEKLLYLDI 431

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 47.7 bits (114), Expect = 5e-06
 Identities = 19/115 (16%), Positives = 37/115 (32%), Gaps = 8/115 (6%)

Query: 164 ISDLFFEGTEELKVLSLIGIH---FSSLPSSLGRLINLQTLCLDWCQLEDVAAIGQLKKL 220
                 EG  ++ +      +   FS        L N+  + L    ++ +  + +  K 
Sbjct: 250 FEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKW 309

Query: 221 EILNLADSNIEQLPLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDN 275
           + L++    ++Q P     L  L+ L LT               L  L  L +  
Sbjct: 310 QSLSIIRCQLKQFP--TLDLPFLKSLTLTMNKGSI---SFKKVALPSLSYLDLSR 359

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 45.4 bits (108), Expect = 2e-05
 Identities = 20/91 (21%), Positives = 29/91 (31%), Gaps = 4/91 (4%)

Query: 164 ISDLFFEGTEELKVLSLIGIHFSSLP-SSLGRLINLQTLCLDWCQLEDV--AAIGQLKKL 220
                F  T  L  L L       +       L  LQ L +    L  +  +   QL  L
Sbjct: 464 TLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSL 523

Query: 221 EILNLADSNIEQLPLEI-GQLTGLRLLDLTN 250
             L+ + + IE     +      L   +LTN
Sbjct: 524 STLDCSFNRIETSKGILQHFPKSLAFFNLTN 554

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 65.1 bits (159), Expect = 2e-11
 Identities = 31/136 (22%), Positives = 54/136 (39%), Gaps = 9/136 (6%)

Query: 169 FEGTEELKVLSLIGIHFSSLP-SSLGRLINLQTLCLDWCQLEDV--AAIGQLKKLEILNL 225
                 L+VL L     +++   +   L +L+ L L    L  +  +  G L  L+ LNL
Sbjct: 46  LRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL 105

Query: 226 ADSNIEQLPL--EIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMD-NSFSGWEK 282
             +  + L +      LT L+ L + N  +   I     + L+ L EL +   S      
Sbjct: 106 MGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLR---N 162

Query: 283 VEGGSNASLVELKRLT 298
            +  S  S+ ++  LT
Sbjct: 163 YQSQSLKSIRDIHHLT 178

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 54.3 bits (131), Expect = 3e-08
 Identities = 25/121 (20%), Positives = 46/121 (38%), Gaps = 12/121 (9%)

Query: 163 QISDLFFEGTEELKVLSLIGIHFSSL----PSSLGRLINLQTLCLDWCQLEDVAAIG--- 215
            +   F +  + L+ L L             +  G   +LQTL L    L  +   G   
Sbjct: 324 LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEIL 383

Query: 216 -QLKKLEILNLADSNIEQLPLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMD 274
             LK L  L+++ +    +P        +R L+L++   ++V+   +      LE L + 
Sbjct: 384 LTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSST-GIRVVKTCI---PQTLEVLDVS 439

Query: 275 N 275
           N
Sbjct: 440 N 440

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 50.9 bits (122), Expect = 4e-07
 Identities = 17/89 (19%), Positives = 37/89 (41%), Gaps = 4/89 (4%)

Query: 163 QISDLFFEGTEELKVLSLIGIHFSSLPSSLGRLINLQTLCLDWCQLEDVAAIGQLKKLEI 222
            I  +     + L+VL +   +  S    L     LQ L +   +L+ +        L +
Sbjct: 421 GIRVVKTCIPQTLEVLDVSNNNLDSFSLFLP---RLQELYISRNKLKTLPDASLFPVLLV 477

Query: 223 LNLADSNIEQLPLEI-GQLTGLRLLDLTN 250
           + ++ + ++ +P  I  +LT L+ + L  
Sbjct: 478 MKISRNQLKSVPDGIFDRLTSLQKIWLHT 506

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 65.3 bits (158), Expect = 2e-11
 Identities = 57/407 (14%), Positives = 122/407 (29%), Gaps = 81/407 (19%)

Query: 52  FENVYTLEEARSRVHRLIDNLKSS------CLLLDGDAEDEVKMHDIIHVVAVSVAAETR 105
            +++   ++A S   RL   L S         + +    +   +   I       +  TR
Sbjct: 51  IDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTR 110

Query: 106 MF-----NIPNVADLEKKMEETIRKDPIAISLPQRNIQELPERLQCPNLQLFLLFRQGYG 160
           M+      + N   +  K   + R  P         +++    L+ P   + +    G G
Sbjct: 111 MYIEQRDRLYNDNQVFAKYNVS-RLQPY------LKLRQALLELR-PAKNVLIDGVLGSG 162

Query: 161 PVQISDLFFEGTEELKVLSLIG-----IHFSSLPSSLGRLINLQTLCL----DWCQLEDV 211
               + +  +     KV   +      ++  +  S    L  LQ L      +W    D 
Sbjct: 163 K---TWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSD- 218

Query: 212 AAIGQLKKLEILNLADSNIEQLPLEIGQLTGLR-----LLDLTNCWSLQVIAP------- 259
                   +++       I  +  E+ +L   +     LL L N  + +           
Sbjct: 219 ----HSSNIKL------RIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKI 268

Query: 260 -------NVISKLS--RLEELYMDNSFSGWEKVEGGSNASLVELKRLTKLTTLEIEVRDA 310
                   V   LS      + +D+        E     SL+      +   L  EV   
Sbjct: 269 LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEV---KSLLLKYLDCRPQDLPREVLTT 325

Query: 311 EILLPDFVSVELQRYRIRIGDKLEYEIDQL--LVKS--EALRLMMLKGL-EKVSILQEN- 364
                  ++  ++       +      D+L  +++S    L     + + +++S+   + 
Sbjct: 326 NPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSA 385

Query: 365 DGTKMLLQRTEDLWL-VKLEGVQNVVHELD-----DGEGFPRLKHLH 405
               +LL     +W  V    V  VV++L      + +       + 
Sbjct: 386 HIPTILLSL---IWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIP 429

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 56.0 bits (134), Expect = 1e-08
 Identities = 34/206 (16%), Positives = 67/206 (32%), Gaps = 50/206 (24%)

Query: 9   IKLSYDFLRSEEAKSMFRLCGLYSEGHAIPVPYLLRYGVGWGLFENVYTLEEARSRVHRL 68
           I+ S + L   E + MF    ++     IP   L      W         +  +S V  +
Sbjct: 359 IESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLI---WF--------DVIKSDVMVV 407

Query: 69  IDNLKSSCLLLDGDAEDEVKMHDIIHVVAVSVAAETRMFNIPNVADLEKKMEETIRKDPI 128
           ++ L    L+     E  + +   I++       E ++  + N   L + +   +    I
Sbjct: 408 VNKLHKYSLVEKQPKESTISIPS-IYL-------ELKV-KLENEYALHRSI---VDHYNI 455

Query: 129 AISLPQRNIQELPER-----------LQCPNLQLFLLFRQGYGPVQISDL-FFEGTEELK 176
             +    ++                     + +   LFR  +      D  F E     K
Sbjct: 456 PKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVF-----LDFRFLEQ----K 506

Query: 177 VLSLIGIHFSSLPSSLGRLIN-LQTL 201
           +      H S+  ++ G ++N LQ L
Sbjct: 507 I-----RHDSTAWNASGSILNTLQQL 527

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 51.0 bits (121), Expect = 5e-07
 Identities = 50/386 (12%), Positives = 120/386 (31%), Gaps = 107/386 (27%)

Query: 56  YTLEEARSRVHRLI-DNLKSSCLL-LDGDAEDE--VKMHDI----------IHVV-AVSV 100
             +   ++ + RL+      +CLL L  + ++       ++            V   +S 
Sbjct: 225 LRIHSIQAELRRLLKSKPYENCLLVLL-NVQNAKAWNAFNLSCKILLTTRFKQVTDFLSA 283

Query: 101 AAETRMFNIPNVADLEKKM-----------------EETIRKDPIAISLPQRNIQELPER 143
           A  T +    +   L                      E +  +P  +S+   +I++    
Sbjct: 284 ATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLAT 343

Query: 144 LQCPNLQLFLLFRQGYGPVQISDLFFEG--TEELKVLSLIGIHFSSL---PSSLGRLINL 198
               N +     +       I +         E + +      F  L   P S    I  
Sbjct: 344 WD--NWKHVNCDKLT----TIIESSLNVLEPAEYRKM------FDRLSVFPPSA--HIPT 389

Query: 199 QTLCLDWCQL--EDVAAIGQLKKLEILNLADSNIEQ-----------LPLEIGQLTGL-- 243
             L L W  +   DV  +  + KL   +L +   ++           L +++     L  
Sbjct: 390 ILLSLIWFDVIKSDVMVV--VNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHR 447

Query: 244 RLLD---LTNCWSLQVIAPNVIS------------------KLSRLEELYMDNSFSGWEK 282
            ++D   +   +    + P  +                   +++    +++D  F   +K
Sbjct: 448 SIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLE-QK 506

Query: 283 VEGGSNASLVELKRLTKLTTLEIEVRDAEILLPDFVSVELQRYRIRIGDKLEY--EIDQL 340
           +   S A       L  L  L+            ++     +Y   +   L++  +I++ 
Sbjct: 507 IRHDSTAWNASGSILNTLQQLK--------FYKPYICDNDPKYERLVNAILDFLPKIEEN 558

Query: 341 LVKSEALRLMMLKGLEKVSILQENDG 366
           L+ S+   L+      +++++ E++ 
Sbjct: 559 LICSKYTDLL------RIALMAEDEA 578

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 63.5 bits (155), Expect = 3e-11
 Identities = 29/174 (16%), Positives = 67/174 (38%), Gaps = 13/174 (7%)

Query: 136 NIQELPERL--QCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPSSLG 193
            I ++ + +      + +  L         I +  F+G ++L  + +   + +++P  L 
Sbjct: 132 EITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGL- 190

Query: 194 RLINLQTLCLDWCQLEDV--AAIGQLKKLEILNLADSNIEQLPLEI-GQLTGLRLLDLTN 250
              +L  L LD  ++  V  A++  L  L  L L+ ++I  +          LR L L N
Sbjct: 191 -PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNN 249

Query: 251 CWSLQVIAPNVISKLSRLEELYM-DNSFSGWEKVEGGSNASLVELKRLTKLTTL 303
              L  + P  ++    ++ +Y+ +N+ S    +            +    + +
Sbjct: 250 N-KLVKV-PGGLADHKYIQVVYLHNNNIS---AIGSNDFCPPGYNTKKASYSGV 298

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 55.8 bits (135), Expect = 8e-09
 Identities = 29/139 (20%), Positives = 52/139 (37%), Gaps = 14/139 (10%)

Query: 175 LKVLSLIGIHFSSLPS-SLGRLINLQTLCLDWCQLEDVA----AIGQLKKLEILNLADSN 229
           L+ L +     + +       L  +  + L    L+       A   +KKL  + +AD+N
Sbjct: 123 LQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN 182

Query: 230 IEQLPLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNSFSGWEKVEGGSNA 289
           I  +P   G    L  L L     +  +    +  L+ L +L +    +    V+ GS A
Sbjct: 183 ITTIPQ--GLPPSLTELHLDGN-KITKVDAASLKGLNNLAKLGLSF--NSISAVDNGSLA 237

Query: 290 SLVELKRLT----KLTTLE 304
           +   L+ L     KL  + 
Sbjct: 238 NTPHLRELHLNNNKLVKVP 256

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 55.8 bits (135), Expect = 9e-09
 Identities = 21/106 (19%), Positives = 45/106 (42%), Gaps = 6/106 (5%)

Query: 173 EELKVLSLIGIHFSSLP-SSLGRLINLQTLCLDWCQLEDVA--AIGQLKKLEILNLADSN 229
            +  +L L     + +       L NL TL L   ++  ++  A   L KLE L L+ + 
Sbjct: 52  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 111

Query: 230 IEQLPLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDN 275
           +++LP        L+ L +     +  +  +V + L+++  + +  
Sbjct: 112 LKELP--EKMPKTLQELRVHEN-EITKVRKSVFNGLNQMIVVELGT 154

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 52.3 bits (126), Expect = 1e-07
 Identities = 31/148 (20%), Positives = 58/148 (39%), Gaps = 21/148 (14%)

Query: 164 ISDLFFEGTEELKVLSLIGIHFSSLPSSLGRLINLQTLCLDWCQLEDV--AAIGQLKKLE 221
           IS   F    +L+ L L       LP  +     LQ L +   ++  V  +    L ++ 
Sbjct: 91  ISPGAFAPLVKLERLYLSKNQLKELPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMI 148

Query: 222 ILNLADSNIEQLPLEIG---QLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMD-NSF 277
           ++ L  + ++   +E G    +  L  + + +  ++  I   +      L EL++D N  
Sbjct: 149 VVELGTNPLKSSGIENGAFQGMKKLSYIRIADT-NITTIPQGL---PPSLTELHLDGNKI 204

Query: 278 SGWEKVEGGSNASLVELKRLTKLTTLEI 305
           +   KV+  S      LK L  L  L +
Sbjct: 205 T---KVDAAS------LKGLNNLAKLGL 223

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 63.7 bits (155), Expect = 3e-11
 Identities = 22/115 (19%), Positives = 40/115 (34%), Gaps = 4/115 (3%)

Query: 163 QISDLFFEGTEELKVLSLIG--IHFSSLPSSLGRLINLQTLCLDWCQLEDVAAIGQLKKL 220
            + DL       ++ L L    I   +          L+ L L +  + DV       KL
Sbjct: 134 MLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKL 193

Query: 221 EILNLADSNIEQLPLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDN 275
           + L+L+ + +  +  E     G+  + L N   L +I    +     LE   +  
Sbjct: 194 KTLDLSSNKLAFMGPEFQSAAGVTWISLRNN-KLVLI-EKALRFSQNLEHFDLRG 246

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 58.7 bits (142), Expect = 2e-09
 Identities = 22/131 (16%), Positives = 45/131 (34%), Gaps = 19/131 (14%)

Query: 163 QISDLFFEGTEELKVLSLIGIHFSSL-PSSLGRLINLQTLCLDWCQLEDVAAIGQLKKLE 221
           Q      +    +K L L G   S +  + L     L+ L L    L +   +  L  L 
Sbjct: 24  QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLR 83

Query: 222 ILNLADSNIEQLP-----------------LEIGQLTGLRLLDLTNCWSLQVIAPNVISK 264
            L+L ++ +++L                  +   +  G + + L N   + ++       
Sbjct: 84  TLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANN-KITMLRDLDEGC 142

Query: 265 LSRLEELYMDN 275
            SR++ L +  
Sbjct: 143 RSRVQYLDLKL 153

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 57.5 bits (139), Expect = 3e-09
 Identities = 32/150 (21%), Positives = 60/150 (40%), Gaps = 19/150 (12%)

Query: 164 ISDLFFEGTEELKVLSLIGIHFSSLPSSLGR-LINLQTLCLDWCQLEDV--AAIGQLKKL 220
           I ++   G    K+  +         +SL +   N++ L L    L  +  A +    KL
Sbjct: 2   IHEIKQNGNR-YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 221 EILNLADSNIEQLPLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMD-NSFSG 279
           E+LNL+ + + +   ++  L+ LR LDL N   +Q +          +E L+   N+ S 
Sbjct: 61  ELLNLSSNVLYETL-DLESLSTLRTLDLNNN-YVQELLV-----GPSIETLHAANNNIS- 112

Query: 280 WEKVEGGSNASLVELK----RLTKLTTLEI 305
             +V          +     ++T L  L+ 
Sbjct: 113 --RVSCSRGQGKKNIYLANNKITMLRDLDE 140

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 51.4 bits (123), Expect = 3e-07
 Identities = 31/274 (11%), Positives = 80/274 (29%), Gaps = 32/274 (11%)

Query: 136 NIQELPERLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPSSLGRL 195
            I ++  ++    L+                           L L     + +       
Sbjct: 180 FIYDVKGQVVFAKLK--------------------------TLDLSSNKLAFMGPEFQSA 213

Query: 196 INLQTLCLDWCQLEDV-AAIGQLKKLEILNLADSNIEQLPLEIGQLTGLRLLDLTNCWSL 254
             +  + L   +L  +  A+   + LE  +L  +      L        R+  +    ++
Sbjct: 214 AGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAK-QTV 272

Query: 255 QVIAPNVISKLSRLEELYMDNSFSGWEKVEGGSNASLVELKRLTKLTTLEIEVRDAEILL 314
           + +      + +     +        E +       L+ L +  +   L  +  + E L 
Sbjct: 273 KKLTGQNEEECTVPTLGHYGAYCC--EDLPAPFADRLIAL-KRKEHALLSGQGSETERLE 329

Query: 315 PDFVSVELQRYRIRIGDKLEYEIDQLLVKSEALRLMMLKGLEKVSILQENDGTKMLLQRT 374
            +  +   QR    + ++    IDQ+ ++ +A   +  K       +         L  T
Sbjct: 330 CERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGT 389

Query: 375 EDLWLVKLEGVQNVVHELDDGEGFPRLKHLHVES 408
               + ++E +Q+   E    +    +   + E 
Sbjct: 390 LQQAVGQIE-LQHATEEQSPLQLLRAIVKRYEEM 422

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 62.4 bits (152), Expect = 1e-10
 Identities = 32/148 (21%), Positives = 52/148 (35%), Gaps = 15/148 (10%)

Query: 163 QISDLFFEGTEELKVLSLIGIHFSSLPS-SLGRLINLQTLCLDWCQLEDVA--AIGQLKK 219
            +    F     L+ L L       +P      L NL  L +   ++  +       L  
Sbjct: 70  AVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYN 129

Query: 220 LEILNLADSNIEQLPLEI-GQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMD-NSF 277
           L+ L + D+++  +       L  L  L L  C +L  I    +S L  L  L +   + 
Sbjct: 130 LKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKC-NLTSIPTEALSHLHGLIVLRLRHLNI 188

Query: 278 SGWEKVEGGSNASLVELKRLTKLTTLEI 305
           +    +   S       KRL +L  LEI
Sbjct: 189 N---AIRDYS------FKRLYRLKVLEI 207

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 59.3 bits (144), Expect = 9e-10
 Identities = 30/140 (21%), Positives = 58/140 (41%), Gaps = 13/140 (9%)

Query: 174 ELKVLSLIGIHFSSLPS-SLGRLINLQTLCLDWCQLEDVA--AIGQLKKLEILNLADSNI 230
           E ++L L      +L         +L+ L L+   +  V   A   L  L  L L  + +
Sbjct: 33  ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRL 92

Query: 231 EQLPLEI-GQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYM-DNSFSGWEKVEGGSN 288
           + +PL +   L+ L  LD++    + ++   +   L  L+ L + DN       +   + 
Sbjct: 93  KLIPLGVFTGLSNLTKLDISEN-KIVILLDYMFQDLYNLKSLEVGDNDLV---YISHRAF 148

Query: 289 ASLVELKRLT----KLTTLE 304
           + L  L++LT     LT++ 
Sbjct: 149 SGLNSLEQLTLEKCNLTSIP 168

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 59.3 bits (144), Expect = 1e-09
 Identities = 36/151 (23%), Positives = 64/151 (42%), Gaps = 13/151 (8%)

Query: 163 QISDLFFEGTEELKVLSLIGIHFSSLPS-SLGRLINLQTLCL-DWCQLEDV-AAIGQLKK 219
            I          L VL L  ++ +++   S  RL  L+ L +  W  L+ +         
Sbjct: 166 SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLN 225

Query: 220 LEILNLADSNIEQLPLE-IGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMD-NSF 277
           L  L++   N+  +P   +  L  LR L+L+    +  I  +++ +L RL+E+ +     
Sbjct: 226 LTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYN-PISTIEGSMLHELLRLQEIQLVGGQL 284

Query: 278 SGWEKVEGGSNASLVELKRLT----KLTTLE 304
           +    VE  +   L  L+ L     +LTTLE
Sbjct: 285 A---VVEPYAFRGLNYLRVLNVSGNQLTTLE 312

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 48.6 bits (116), Expect = 2e-06
 Identities = 23/96 (23%), Positives = 38/96 (39%), Gaps = 5/96 (5%)

Query: 163 QISDLFFEGTEELKVLSLIGIHFSSLPS-SLGRLINLQTLCLDWCQLEDVA--AIGQLKK 219
            +  L       L+ L+L     S++    L  L+ LQ + L   QL  V   A   L  
Sbjct: 238 AVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNY 297

Query: 220 LEILNLADSNIEQLPLEI-GQLTGLRLLDLT-NCWS 253
           L +LN++ + +  L   +   +  L  L L  N  +
Sbjct: 298 LRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 62.0 bits (151), Expect = 1e-10
 Identities = 29/186 (15%), Positives = 63/186 (33%), Gaps = 23/186 (12%)

Query: 130 ISLPQRNIQELPERLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLP 189
           +     +I ++    +   L   +          I+ L       L  L+      ++L 
Sbjct: 47  LDCHNSSITDMTGIEKLTGLTKLICTSN-----NITTLDLSQNTNLTYLACDSNKLTNLD 101

Query: 190 SSLGRLINLQTLCLDWCQLEDVAAIGQLKKLEILNLADSNIEQLPLEIGQLTGLRLLDLT 249
             +  L  L  L  D  +L  +  + Q   L  LN A + + ++   +   T L  LD  
Sbjct: 102 --VTPLTKLTYLNCDTNKLTKL-DVSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCH 156

Query: 250 NCWSLQVIAPNVISKLSRLEELYMDN------SFSGWEKVE----GGSNASLVELKRLTK 299
               +  +    ++  ++L  L            S  + +       +N + ++L +  +
Sbjct: 157 LNKKITKLD---VTPQTQLTTLDCSFNKITELDVSQNKLLNRLNCDTNNITKLDLNQNIQ 213

Query: 300 LTTLEI 305
           LT L+ 
Sbjct: 214 LTFLDC 219

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 53.5 bits (129), Expect = 5e-08
 Identities = 28/120 (23%), Positives = 46/120 (38%), Gaps = 11/120 (9%)

Query: 189 PSSLGRLINLQTLCLDWCQLEDVAAIGQLKKLEILNLADSNIEQLPLEIGQLTGLRLLDL 248
             S  +L  L +L      + D+  I +L  L  L    +NI  L L   Q T L  L  
Sbjct: 35  TISEEQLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLDL--SQNTNLTYLAC 92

Query: 249 TNCWSLQVIAPNVISKLSRLEELYM-DNSFSGWEKVEGGSNASLVELK-RLTKLTTLEIE 306
            +   L  +    ++ L++L  L    N  +   K++   N  L  L      LT +++ 
Sbjct: 93  DSN-KLTNLD---VTPLTKLTYLNCDTNKLT---KLDVSQNPLLTYLNCARNTLTEIDVS 145

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 52.4 bits (126), Expect = 1e-07
 Identities = 19/145 (13%), Positives = 49/145 (33%), Gaps = 21/145 (14%)

Query: 163 QISDLFFEGTEELKVLSLIGIHFSSLPSSLGRLINLQTLCLDWCQLEDVAAIGQLKKLEI 222
           +++ L       L  L+      + +   +     L  L     +      +    +L  
Sbjct: 117 KLTKLDVSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKLDVTPQTQLTT 174

Query: 223 LNLADSNIEQLPLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNSFSGWEK 282
           L+ + + I +L   + Q   L  L+     ++  +    +++  +L  L   +       
Sbjct: 175 LDCSFNKITELD--VSQNKLLNRLNCDTN-NITKLD---LNQNIQLTFLDCSS------- 221

Query: 283 VEGGSNA-SLVELKRLTKLTTLEIE 306
                N  + +++  LT+LT  +  
Sbjct: 222 -----NKLTEIDVTPLTQLTYFDCS 241

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 50.1 bits (120), Expect = 7e-07
 Identities = 15/88 (17%), Positives = 33/88 (37%), Gaps = 2/88 (2%)

Query: 163 QISDLFFEGTEELKVLSLIGIHFSSLPSSLGRLINLQTLCLDWCQLEDVAAIGQLKKLEI 222
            I++L      +L  L L     + L   +     L++L      ++D +++G++  L  
Sbjct: 308 GITELDLSQNPKLVYLYLNNTELTELD--VSHNTKLKSLSCVNAHIQDFSSVGKIPALNN 365

Query: 223 LNLADSNIEQLPLEIGQLTGLRLLDLTN 250
              A+     +P E      L +    +
Sbjct: 366 NFEAEGQTITMPKETLTNNSLTIAVSPD 393

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 49.7 bits (119), Expect = 1e-06
 Identities = 24/169 (14%), Positives = 48/169 (28%), Gaps = 26/169 (15%)

Query: 136 NIQELPERLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPSSLGRL 195
            + E+        L  F           +++L      +L  L  I      +   L   
Sbjct: 223 KLTEIDVT-PLTQLTYFDCSVN-----PLTELDVSTLSKLTTLHCIQTDLLEID--LTHN 274

Query: 196 INLQTLCLDWCQLEDVAAIGQLKKLEILNLADSNIEQLPLEIGQLTGLRLLDLTNCWSLQ 255
             L     + C+      +    +L +L+   + I +L   + Q   L  L L N   L 
Sbjct: 275 TQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELD--LSQNPKLVYLYLNNT-ELT 331

Query: 256 VIAPNVISKLSRLEELYMD-NSFSGWEKVEGGSNASLVELKRLTKLTTL 303
            +    +S  ++L+ L                       + ++  L   
Sbjct: 332 ELD---VSHNTKLKSLSCVNAHIQ-----------DFSSVGKIPALNNN 366

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 60.0 bits (146), Expect = 3e-10
 Identities = 32/121 (26%), Positives = 49/121 (40%), Gaps = 11/121 (9%)

Query: 163 QISDL---FFEGTEELKVLSLIGIHFSSLPSSL-GRLINLQTLCLDWCQLEDVA--AIGQ 216
           +I  +    ++    L  L L G    SL       L +LQ L      L  +    IG 
Sbjct: 63  EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGH 122

Query: 217 LKKLEILNLADSNIEQLPLEIG---QLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYM 273
           LK L+ LN+A + I+   L       LT L  LDL++   +Q I    +  L ++  L +
Sbjct: 123 LKTLKELNVAHNLIQSFKLP-EYFSNLTNLEHLDLSSN-KIQSIYCTDLRVLHQMPLLNL 180

Query: 274 D 274
            
Sbjct: 181 S 181

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 55.4 bits (134), Expect = 7e-09
 Identities = 28/105 (26%), Positives = 41/105 (39%), Gaps = 5/105 (4%)

Query: 175 LKVLSLIGIHFSSLPS-SLGRLINLQTLCLDWCQLEDVA--AIGQLKKLEILNLADSNIE 231
            K L L       L S S      LQ L L  C+++ +   A   L  L  L L  + I+
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89

Query: 232 QLPLEI-GQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDN 275
            L L     L+ L+ L      +L  +    I  L  L+EL + +
Sbjct: 90  SLALGAFSGLSSLQKLVAVET-NLASLENFPIGHLKTLKELNVAH 133

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 54.2 bits (131), Expect = 2e-08
 Identities = 29/116 (25%), Positives = 50/116 (43%), Gaps = 11/116 (9%)

Query: 169 FEGTEELKVLSLIGIHFSSLPSSL-GRLINLQTLCLDWCQLEDVAAIG---QLKKLEILN 224
           F G   L+ L  +  + +SL +   G L  L+ L +    ++          L  LE L+
Sbjct: 96  FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLD 155

Query: 225 LADSNIEQLPLEI----GQLTGLRL-LDLTNCWSLQVIAPNVISKLSRLEELYMDN 275
           L+ + I+ +         Q+  L L LDL +   +  I P    ++ RL+EL +D 
Sbjct: 156 LSSNKIQSIYCTDLRVLHQMPLLNLSLDL-SLNPMNFIQPGAFKEI-RLKELALDT 209

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 59.7 bits (145), Expect = 5e-10
 Identities = 34/160 (21%), Positives = 61/160 (38%), Gaps = 16/160 (10%)

Query: 163 QISDL---FFEGTEELKVLSLIGIHFSSLPS-SLGRLINLQTLCLDWCQLEDVA--AIGQ 216
           +I+ +     +    L+ L L     +++   S   L +L+ L L +  L +++      
Sbjct: 63  RITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKP 122

Query: 217 LKKLEILNLADSNIEQLPLEI--GQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMD 274
           L  L  LNL  +  + L        LT L++L + N  +   I     + L+ LEEL +D
Sbjct: 123 LSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEID 182

Query: 275 -NSFSGWEKVEGGSNASLVELKRLT----KLTTLEIEVRD 309
            +        E  S  S+  +  L     +   L     D
Sbjct: 183 ASDLQ---SYEPKSLKSIQNVSHLILHMKQHILLLEIFVD 219

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 60.3 bits (146), Expect = 6e-10
 Identities = 25/193 (12%), Positives = 64/193 (33%), Gaps = 23/193 (11%)

Query: 130 ISLPQRNIQELPERLQCPNLQLFLLFRQGYGPVQISDL---FFEGTEELKVLSLIGIHFS 186
           I +  +++    E +   N ++            +  L     +   ++++L+L  +   
Sbjct: 34  IDMQTQDVYFGFEDITLNNQKIVTFKNS-----TMRKLPAALLDSFRQVELLNLNDLQIE 88

Query: 187 SLPS-SLGRLINLQTLCLDWCQLEDVA--AIGQLKKLEILNLADSNIEQLPLEI-GQLTG 242
            + + +      +Q L + +  +  +       +  L +L L  +++  LP  I      
Sbjct: 89  EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPK 148

Query: 243 LRLLDLTNCWSLQVIAPNVISKLSRLEELYMDN---------SFSGWEKVEGGSNASLVE 293
           L  L ++N  +L+ I  +     + L+ L + +                     N  L  
Sbjct: 149 LTTLSMSNN-NLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYN-LLST 206

Query: 294 LKRLTKLTTLEIE 306
           L     +  L+  
Sbjct: 207 LAIPIAVEELDAS 219

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 57.6 bits (139), Expect = 4e-09
 Identities = 16/116 (13%), Positives = 43/116 (37%), Gaps = 7/116 (6%)

Query: 163 QISDL-FFEGTEELKVLSLIGIHFSSLP-SSLGRLINLQTLCLDWCQLEDV-AAIGQLKK 219
            ++D  +      L  + L       +      ++  L+ L +   +L  +      +  
Sbjct: 243 NLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPT 302

Query: 220 LEILNLADSNIEQLPLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDN 275
           L++L+L+ +++  +     Q   L  L L +  S+  +  +       L+ L + +
Sbjct: 303 LKVLDLSHNHLLHVERNQPQFDRLENLYLDHN-SIVTLKLST---HHTLKNLTLSH 354

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 51.1 bits (122), Expect = 5e-07
 Identities = 33/150 (22%), Positives = 52/150 (34%), Gaps = 19/150 (12%)

Query: 163 QISDLFFEGTEELKVLSLIGIHFSSLPSSL-GRLINLQTLCLDWCQLEDV--AAIGQLKK 219
            +    F+    L VL L     SSLP  +      L TL +    LE +          
Sbjct: 113 YLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTS 172

Query: 220 LEILNLADSNIEQLPLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMD-NSFS 278
           L+ L L+ + +  + L    +  L   +++          + ++    +EEL    NS +
Sbjct: 173 LQNLQLSSNRLTHVDL--SLIPSLFHANVSYN------LLSTLAIPIAVEELDASHNSIN 224

Query: 279 GWEKVEGGSNASLVELK----RLTKLTTLE 304
               V G  N  L  LK     LT    L 
Sbjct: 225 ---VVRGPVNVELTILKLQHNNLTDTAWLL 251

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 58.1 bits (141), Expect = 8e-10
 Identities = 33/147 (22%), Positives = 61/147 (41%), Gaps = 21/147 (14%)

Query: 163 QISDL-FFEGTEELKVLSLIGIHFSSLPSSLGRLINLQTLCLDWCQLEDVAAIGQLKKLE 221
            ++DL   +    ++  +    +  SL + +    NL+ L L   Q+ D++ +  L KLE
Sbjct: 30  SVTDLVSQKELSGVQNFNGDNSNIQSL-AGMQFFTNLKELHLSHNQISDLSPLKDLTKLE 88

Query: 222 ILNLADSNIEQLPLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNSFSGWE 281
            L++  + ++   L       L  L L N    ++   + +  L  LE L + N      
Sbjct: 89  ELSVNRNRLKN--LNGIPSACLSRLFLDNN---ELRDTDSLIHLKNLEILSIRN------ 137

Query: 282 KVEGGSNA--SLVELKRLTKLTTLEIE 306
                 N   S+V L  L+KL  L++ 
Sbjct: 138 ------NKLKSIVMLGFLSKLEVLDLH 158

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 55.4 bits (134), Expect = 6e-09
 Identities = 29/131 (22%), Positives = 50/131 (38%), Gaps = 21/131 (16%)

Query: 190 SSLGRLINLQTLCLDWCQLEDVAAIGQLKKLEILNLADSNIEQLPLEIGQLTGLRLLDLT 249
                L N     L    + D+ +  +L  ++  N  +SNI+ L   +   T L+ L L+
Sbjct: 13  FPDPGLANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLS 71

Query: 250 NCWSLQVIAPNVISKLSRLEELYM-DNSFSGWEKVEGGSNASLVEL-------------K 295
           +   +  ++P  +  L++LEEL +  N       + G  +A L  L              
Sbjct: 72  HN-QISDLSP--LKDLTKLEELSVNRNRLK---NLNGIPSACLSRLFLDNNELRDTDSLI 125

Query: 296 RLTKLTTLEIE 306
            L  L  L I 
Sbjct: 126 HLKNLEILSIR 136

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 55.4 bits (134), Expect = 8e-09
 Identities = 27/116 (23%), Positives = 47/116 (40%), Gaps = 13/116 (11%)

Query: 163 QISDLFFEGTEELKVLSLIGIHFSSLPSSLGRLINLQTLCLDWCQLEDVAAIGQLKKLEI 222
           ++ +L    +  L  L L          SL  L NL+ L +   +L+ +  +G L KLE+
Sbjct: 96  RLKNLNGIPSACLSRLFLDNNELRDT-DSLIHLKNLEILSIRNNKLKSIVMLGFLSKLEV 154

Query: 223 LNLADSNIEQLPLEIGQLTGLRLLDLTNCWSLQVIAPNVISK--LSRLEELYMDNS 276
           L+L  + I      + +L  +  +DLT                 +    ELY+ N+
Sbjct: 155 LDLHGNEITNTG-GLTRLKKVNWIDLTG---------QKCVNEPVKYQPELYITNT 200

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 40.8 bits (96), Expect = 4e-04
 Identities = 22/101 (21%), Positives = 41/101 (40%), Gaps = 18/101 (17%)

Query: 207 QLEDVAAIGQLKKLEILNLADSNIEQLPLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLS 266
            +  V     L      NL   ++  L     +L+G++  +  N  ++Q +A   +   +
Sbjct: 8   PINQVFPDPGLANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNS-NIQSLAG--MQFFT 63

Query: 267 RLEELYMDNSFSGWEKVEGGSN--ASLVELKRLTKLTTLEI 305
            L+EL++ +            N  + L  LK LTKL  L +
Sbjct: 64  NLKELHLSH------------NQISDLSPLKDLTKLEELSV 92

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 58.9 bits (143), Expect = 1e-09
 Identities = 24/142 (16%), Positives = 52/142 (36%), Gaps = 16/142 (11%)

Query: 136 NIQELPERLQCPNLQLFLLFRQGYGPVQISDL-FFEGTEELKVLSLIGIHFSSLPSSLGR 194
           ++++LP+    P+L+            Q+ +L   +    L  +         LP     
Sbjct: 164 SLKKLPDLP--PSLEFIAAGN-----NQLEELPELQNLPFLTAIYADNNSLKKLPDLPL- 215

Query: 195 LINLQTLCLDWCQLEDVAAIGQLKKLEILNLADSNIEQLPLEIGQLTGLRLLDLTNCWSL 254
             +L+++      LE++  +  L  L  +   ++ ++ LP     L  L + D      L
Sbjct: 216 --SLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDN----YL 269

Query: 255 QVIAPNVISKLSRLEELYMDNS 276
             + P +   L+ L+      S
Sbjct: 270 TDL-PELPQSLTFLDVSENIFS 290

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 53.8 bits (130), Expect = 5e-08
 Identities = 21/119 (17%), Positives = 43/119 (36%), Gaps = 23/119 (19%)

Query: 174 ELKVLSLIGIHFSSLPSSLGRLI-----------------NLQTLCLDWCQLEDVAAIGQ 216
            L+ L       + LP     L                   L+ L +   QLE +  +  
Sbjct: 92  HLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQN 151

Query: 217 LKKLEILNLADSNIEQLPLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDN 275
              L+I+++ ++++++LP     L  +   +      L+ +    +  L  L  +Y DN
Sbjct: 152 SSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNN----QLEELPE--LQNLPFLTAIYADN 204

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 49.6 bits (119), Expect = 1e-06
 Identities = 15/118 (12%), Positives = 38/118 (32%), Gaps = 24/118 (20%)

Query: 175 LKVLSLIGIHFSSLPSSLGRLINLQTLCLDWCQLEDV-AAIGQLK--------------- 218
           L+ L     H + +P       NL+ L +++  L +       ++               
Sbjct: 339 LERLIASFNHLAEVPELPQ---NLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELP 395

Query: 219 -KLEILNLADSNIEQLPLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDN 275
             L+ L++  + + + P     +  LR+        +            +LE+   ++
Sbjct: 396 QNLKQLHVETNPLREFPDIPESVEDLRMNSE----RVVDPYEFAHETTDKLEDDVFEH 449

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 48.1 bits (115), Expect = 3e-06
 Identities = 27/150 (18%), Positives = 50/150 (33%), Gaps = 30/150 (20%)

Query: 136 NIQELPERLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPSSLGRL 195
            ++ELPE    P L              +  L  +    L+ L++   + + LP     L
Sbjct: 226 ILEELPELQNLPFLTTIYADN-----NLLKTLP-DLPPSLEALNVRDNYLTDLPELPQSL 279

Query: 196 I-----------------NLQTLCLDWCQLEDVAAIGQLKKLEILNLADSNIEQLPLEIG 238
                             NL  L     ++  +        LE LN++++ + +LP    
Sbjct: 280 TFLDVSENIFSGLSELPPNLYYLNASSNEIRSL--CDLPPSLEELNVSNNKLIELPALPP 337

Query: 239 QLTGLRLLDLTNCWSLQVIAPNVISKLSRL 268
           +L     L  +    L  + P +   L +L
Sbjct: 338 RLE---RLIASFN-HLAEV-PELPQNLKQL 362

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 48.1 bits (115), Expect = 3e-06
 Identities = 24/153 (15%), Positives = 47/153 (30%), Gaps = 27/153 (17%)

Query: 175 LKVLSLIGIHFSSLPSSLGRLINLQTLCLDWCQLEDV--AAIGQL-------------KK 219
           L+       + + +P     + +       W + E       G+              ++
Sbjct: 13  LQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQ 72

Query: 220 LEILNLADSNIEQLPLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYM-DNSFS 278
              L L +  +  LP     L  L      +C SL  + P +   L  L        + S
Sbjct: 73  AHELELNNLGLSSLPELPPHLESLVA----SCNSLTEL-PELPQSLKSLLVDNNNLKALS 127

Query: 279 GW----EKVEGGSN--ASLVELKRLTKLTTLEI 305
                 E +   +N    L EL+  + L  +++
Sbjct: 128 DLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDV 160

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 58.5 bits (142), Expect = 1e-09
 Identities = 16/116 (13%), Positives = 43/116 (37%), Gaps = 7/116 (6%)

Query: 163 QISDL-FFEGTEELKVLSLIGIHFSSLP-SSLGRLINLQTLCLDWCQLEDV-AAIGQLKK 219
            ++D  +      L  + L       +      ++  L+ L +   +L  +      +  
Sbjct: 237 NLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPT 296

Query: 220 LEILNLADSNIEQLPLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDN 275
           L++L+L+ +++  +     Q   L  L L +  S+  +  +       L+ L + +
Sbjct: 297 LKVLDLSHNHLLHVERNQPQFDRLENLYLDHN-SIVTLKLST---HHTLKNLTLSH 348

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 56.2 bits (136), Expect = 8e-09
 Identities = 23/153 (15%), Positives = 53/153 (34%), Gaps = 18/153 (11%)

Query: 166 DLFFEGTEELKVLSLIGIHFSSLPSSLG------RLINLQTLCLDWCQLEDV--AAIGQL 217
           +     +          +H       +        L N + +      +  +  A +   
Sbjct: 9   EYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSF 68

Query: 218 KKLEILNLADSNIEQLPLEI-GQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYM-DN 275
           +++E+LNL D  IE++          ++ L +    +++ + P+V   +  L  L +  N
Sbjct: 69  RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQNVPLLTVLVLERN 127

Query: 276 SFSGWEKVEGGSNASLVELKRLT----KLTTLE 304
             S    +  G   +  +L  L+     L  +E
Sbjct: 128 DLS---SLPRGIFHNTPKLTTLSMSNNNLERIE 157

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 52.7 bits (127), Expect = 1e-07
 Identities = 33/150 (22%), Positives = 52/150 (34%), Gaps = 19/150 (12%)

Query: 163 QISDLFFEGTEELKVLSLIGIHFSSLPSSL-GRLINLQTLCLDWCQLEDV--AAIGQLKK 219
            +    F+    L VL L     SSLP  +      L TL +    LE +          
Sbjct: 107 YLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTS 166

Query: 220 LEILNLADSNIEQLPLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYM-DNSFS 278
           L+ L L+ + +  + L    +  L   +++          + ++    +EEL    NS +
Sbjct: 167 LQNLQLSSNRLTHVDL--SLIPSLFHANVSYN------LLSTLAIPIAVEELDASHNSIN 218

Query: 279 GWEKVEGGSNASLVELK----RLTKLTTLE 304
               V G  N  L  LK     LT    L 
Sbjct: 219 ---VVRGPVNVELTILKLQHNNLTDTAWLL 245

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 58.2 bits (140), Expect = 2e-09
 Identities = 22/124 (17%), Positives = 49/124 (39%), Gaps = 12/124 (9%)

Query: 184 HFSSLPSSLGRLINLQTLCLDWCQLEDVAAIGQLKKLEILNLADSNIEQLPLEIGQLTGL 243
                        +++ L L    L  +  + QL  +  L+L+ + +  LP  +  L  L
Sbjct: 429 FLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCL 488

Query: 244 RLLDLTNCWSLQVIAPNVISKLSRLEELYM-DNSFSGWEKVEGGSNASLVELKRLTKLTT 302
            +L  ++  +L+ +    ++ L RL+EL + +N       ++         L    +L  
Sbjct: 489 EVLQASDN-ALENVDG--VANLPRLQELLLCNNRLQQSAAIQ--------PLVSCPRLVL 537

Query: 303 LEIE 306
           L ++
Sbjct: 538 LNLQ 541

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 58.2 bits (140), Expect = 2e-09
 Identities = 20/78 (25%), Positives = 34/78 (43%), Gaps = 2/78 (2%)

Query: 175 LKVLSLIGIHFSSLPSSLGRLINLQTLCLDWCQLEDVAAIGQLKKLEILNLADSNIEQLP 234
           +  L L      +LP +L  L  L+ L      LE+V  +  L +L+ L L ++ ++Q  
Sbjct: 465 VTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRLQQSA 524

Query: 235 --LEIGQLTGLRLLDLTN 250
               +     L LL+L  
Sbjct: 525 AIQPLVSCPRLVLLNLQG 542

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 55.8 bits (135), Expect = 8e-09
 Identities = 20/104 (19%), Positives = 42/104 (40%), Gaps = 6/104 (5%)

Query: 175 LKVLSLIGIHFSSLP-SSLGRLINLQTLCLDWCQLEDVA--AIGQLKKLEILNLADSNIE 231
             +L L     S L       L +L  L L   ++  +   A   L+KL+ L ++ +++ 
Sbjct: 56  TTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV 115

Query: 232 QLPLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDN 275
           ++P      + L  L + +   ++ +   V S L  +  + M  
Sbjct: 116 EIPP--NLPSSLVELRIHDN-RIRKVPKGVFSGLRNMNCIEMGG 156

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 52.7 bits (127), Expect = 8e-08
 Identities = 26/194 (13%), Positives = 66/194 (34%), Gaps = 34/194 (17%)

Query: 136 NIQELPERL--QCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPS--- 190
            I+++P+ +     N+    +              F+G + L  L +     + +P    
Sbjct: 134 RIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLK-LNYLRISEAKLTGIPKDLP 192

Query: 191 -------------------SLGRLINLQTLCLDWCQLEDVA--AIGQLKKLEILNLADSN 229
                               L R   L  L L   Q+  +   ++  L  L  L+L ++ 
Sbjct: 193 ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNK 252

Query: 230 IEQLPLEIGQLTGLRLLDLTNCWSLQVIAPNVIS------KLSRLEELYMDNSFSGWEKV 283
           + ++P  +  L  L+++ L    ++  +  N         K +    + + N+   + +V
Sbjct: 253 LSRVPAGLPDLKLLQVVYLHTN-NITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEV 311

Query: 284 EGGSNASLVELKRL 297
           +  +   + +   +
Sbjct: 312 QPATFRCVTDRLAI 325

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 52.3 bits (126), Expect = 1e-07
 Identities = 31/147 (21%), Positives = 57/147 (38%), Gaps = 20/147 (13%)

Query: 164 ISDLFFEGTEELKVLSLIGIHFSSLPSSLGRLINLQTLCLDWCQLEDVA--AIGQLKKLE 221
           I +  F    +L+ L +   H   +P +L    +L  L +   ++  V       L+ + 
Sbjct: 93  IHEKAFSPLRKLQKLYISKNHLVEIPPNL--PSSLVELRIHDNRIRKVPKGVFSGLRNMN 150

Query: 222 ILNLADSNIEQLPLEIGQLTGLRL--LDLTNCWSLQVIAPNVISKLSRLEELYMD-NSFS 278
            + +  + +E    E G   GL+L  L ++    L  I  ++      L EL++D N   
Sbjct: 151 CIEMGGNPLENSGFEPGAFDGLKLNYLRISEA-KLTGIPKDL---PETLNELHLDHNKIQ 206

Query: 279 GWEKVEGGSNASLVELKRLTKLTTLEI 305
               +E         L R +KL  L +
Sbjct: 207 ---AIELED------LLRYSKLYRLGL 224

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 51.6 bits (124), Expect = 2e-07
 Identities = 24/122 (19%), Positives = 42/122 (34%), Gaps = 10/122 (8%)

Query: 164 ISDLFFEGTEELKVLSLIGIHFSSLPS-SLGRLINLQTLCLDWCQLEDV-AAIGQLKKLE 221
           I         +L  L L       + + SL  L  L+ L LD  +L  V A +  LK L+
Sbjct: 208 IELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQ 267

Query: 222 ILNLADSNIEQLP-------LEIGQLTGLRLLDLT-NCWSLQVIAPNVISKLSRLEELYM 273
           ++ L  +NI ++            +      + L  N      + P     ++    +  
Sbjct: 268 VVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQF 327

Query: 274 DN 275
            N
Sbjct: 328 GN 329

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 56.7 bits (137), Expect = 9e-09
 Identities = 23/112 (20%), Positives = 44/112 (39%), Gaps = 12/112 (10%)

Query: 175 LKVLSLIGIHFSSLP--SSLGRLINLQTLCLDWCQLEDV---AAIGQLKKLEILNLADSN 229
             ++ L      +L     L R+ +LQ L L+  +           +   LE L L ++ 
Sbjct: 403 ANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENM 462

Query: 230 IEQLPLE------IGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDN 275
           ++              L+ L++L L +   L  + P V S L+ L  L +++
Sbjct: 463 LQLAWETELCWDVFEGLSHLQVLYLNHN-YLNSLPPGVFSHLTALRGLSLNS 513

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 52.9 bits (127), Expect = 1e-07
 Identities = 24/120 (20%), Positives = 43/120 (35%), Gaps = 7/120 (5%)

Query: 163 QISDLFFEGTEELKVLSLIG--IHFSSLPSSLGRLINLQTLCLDWCQLEDVA--AIGQLK 218
            ++   F   E+L++L L       +    +   L NL+ L L   ++  +   A   L 
Sbjct: 38  TVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLF 97

Query: 219 KLEILNLADSNIEQLPLE---IGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDN 275
            L  L L    +    L+      L  L  LDL+      +       KL+ L+ +   +
Sbjct: 98  HLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSS 157

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 50.2 bits (120), Expect = 9e-07
 Identities = 25/118 (21%), Positives = 46/118 (38%), Gaps = 8/118 (6%)

Query: 184 HFSSLPSSLGRLINLQTLCLDWCQLEDV--AAIGQLKKLEILNLADSNIEQL--PLEIGQ 239
           + + +P  L      + L L +  +  V  ++   L++L++L L                
Sbjct: 15  NLTQVPQVLN---TTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRN 71

Query: 240 LTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNSFSGWEKVEGGSNASLVELKRL 297
           L  LR+LDL +   +  + P+    L  L EL +         ++ G   +L  L RL
Sbjct: 72  LPNLRILDLGSS-KIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRL 128

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 49.4 bits (118), Expect = 2e-06
 Identities = 17/119 (14%), Positives = 41/119 (34%), Gaps = 7/119 (5%)

Query: 163 QISDLFFEGTEELKVLSLIGIHFSSLPSSL---GRLINLQTLCLDWCQLEDV--AAIGQL 217
           +           +        +      +        +++ L L    +  +       L
Sbjct: 230 KSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETL 289

Query: 218 KKLEILNLADSNIEQLPLEI-GQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDN 275
           K L++LNLA + I ++  E    L  L++L+L+    L  +  +    L ++  + +  
Sbjct: 290 KDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYN-LLGELYSSNFYGLPKVAYIDLQK 347

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 46.0 bits (109), Expect = 2e-05
 Identities = 20/117 (17%), Positives = 41/117 (35%), Gaps = 12/117 (10%)

Query: 168 FFEGTEELKVLSLIGIHFSSLPSSLGRLINLQTLCLDWCQLEDV---AAIGQLKKLEILN 224
                  +  + L G    +LP      +    + L   +LE++     + ++  L+IL 
Sbjct: 376 TIHFIPSIPDIFLSGNKLVTLPK---INLTANLIHLSENRLENLDILYFLLRVPHLQILI 432

Query: 225 LADSNIEQLPLE--IGQLTGLRLLDLTNC----WSLQVIAPNVISKLSRLEELYMDN 275
           L  +       +    +   L  L L            +  +V   LS L+ LY+++
Sbjct: 433 LNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNH 489

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 53.5 bits (129), Expect = 2e-08
 Identities = 29/136 (21%), Positives = 60/136 (44%), Gaps = 14/136 (10%)

Query: 174 ELKVLSLIGIH--FSSLPSSLGRLINLQTLCLDWCQLEDVAAIGQLKKLEILNLADSNIE 231
           E + + L G+      + ++L  L   + L L    +E ++++  ++ L IL+L  + I+
Sbjct: 24  EAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIK 83

Query: 232 QLPLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYM-DNSFSGWEKVEGGSNAS 290
           ++         L  L ++    +  ++   I KL  L  LYM +N  + W +++      
Sbjct: 84  KIENLDAVADTLEELWISYN-QIASLSG--IEKLVNLRVLYMSNNKITNWGEID------ 134

Query: 291 LVELKRLTKLTTLEIE 306
             +L  L KL  L + 
Sbjct: 135 --KLAALDKLEDLLLA 148

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 54.4 bits (131), Expect = 3e-08
 Identities = 28/140 (20%), Positives = 51/140 (36%), Gaps = 7/140 (5%)

Query: 142 ERLQCPNLQLFLLFRQGYGPVQISDLFFEGTE--ELKVLSLIGIHFSSLPSSL-GRLINL 198
           + L   N                 +  F+G E   +K   L      +L  S+     +L
Sbjct: 242 QSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDL 301

Query: 199 QTLCLDWCQLEDVA--AIGQLKKLEILNLADSNIEQLPLEI-GQLTGLRLLDLTNCWSLQ 255
           + L L   ++  +   A   L  L  LNL+ + +  +   +   L  L +LDL+    ++
Sbjct: 302 EQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYN-HIR 360

Query: 256 VIAPNVISKLSRLEELYMDN 275
            +       L  L+EL +D 
Sbjct: 361 ALGDQSFLGLPNLKELALDT 380

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 48.6 bits (116), Expect = 2e-06
 Identities = 32/148 (21%), Positives = 52/148 (35%), Gaps = 14/148 (9%)

Query: 169 FEGTEELKVLSLIGIHFSSLPSS-LGRLINLQTLCLDWCQLEDVA----AIGQLKKLEIL 223
           F G   L +L L    F  L +     L NL+ L L  C L+           L  LE+L
Sbjct: 75  FRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEML 134

Query: 224 NLADSNIEQLPLEI--GQLTGLRLLDL-TNCWSLQVIAPNVISKLSRLEELYMD---NSF 277
            L D+NI+++        +    +LDL  N    + I    +          +     + 
Sbjct: 135 VLRDNNIKKIQPASFFLNMRRFHVLDLTFNKV--KSICEEDLLNFQGKHFTLLRLSSITL 192

Query: 278 SGWEKVEGGSNASLVELKRLTKLTTLEI 305
               +   G         + T +TTL++
Sbjct: 193 QDMNEYWLGWEKCGN-PFKNTSITTLDL 219

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 53.7 bits (129), Expect = 6e-08
 Identities = 21/141 (14%), Positives = 43/141 (30%), Gaps = 9/141 (6%)

Query: 175 LKVLSLIGIHFSSLPSSLGRLINLQTLCLDWCQLEDV-AAIGQLKKLEILNLADSNIEQL 233
           LK L + G   +SLP        L+ L +   +L  +      L  L   ++  + + +L
Sbjct: 223 LKELIVSGNRLTSLPVLPS---ELKELMVSGNRLTSLPMLPSGLLSL---SVYRNQLTRL 276

Query: 234 PLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNSFSGWEKVEG-GSNASLV 292
           P  +  L+    ++L     L       + +++                        +L 
Sbjct: 277 PESLIHLSSETTVNLEGN-PLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALH 335

Query: 293 ELKRLTKLTTLEIEVRDAEIL 313
                  +   E E   A+  
Sbjct: 336 LAAADWLVPAREGEPAPADRW 356

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 51.4 bits (123), Expect = 4e-07
 Identities = 31/159 (19%), Positives = 49/159 (30%), Gaps = 39/159 (24%)

Query: 136 NIQELPERL-QCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPSSLGR 194
            +  LP        L +F           +  L       L  L + G   +SLP     
Sbjct: 92  QLTSLPVLPPGLLELSIFSNPLT-----HLPALP----SGLCKLWIFGNQLTSLPVLPP- 141

Query: 195 LINLQTLCLDWCQLEDV-AAIGQLKKLEI-----------------LNLADSNIEQLPLE 236
              LQ L +   QL  + A   +L KL                   L+++D+ +  LP  
Sbjct: 142 --GLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLASLPTL 199

Query: 237 IGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDN 275
             +L  L   +      L  +        S L+EL +  
Sbjct: 200 PSELYKLWAYNN----RLTSLPAL----PSGLKELIVSG 230

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 51.0 bits (122), Expect = 5e-07
 Identities = 19/103 (18%), Positives = 39/103 (37%), Gaps = 16/103 (15%)

Query: 175 LKVLSLIGIHFSSLPSSLGRLINLQTLCLDWCQLEDV-AAIGQLKKLEILNLADSNIEQL 233
             VL++     ++LP  L    ++ TL +    L  + A   +L+ L    ++ + +  L
Sbjct: 42  NAVLNVGESGLTTLPDCLPA--HITTLVIPDNNLTSLPALPPELRTL---EVSGNQLTSL 96

Query: 234 PLEIGQLTGLRLLDLTNCWSLQVIAPNVISKL-SRLEELYMDN 275
           P+    L  L +                +  L S L +L++  
Sbjct: 97  PVLPPGLLELSIFSNPL---------THLPALPSGLCKLWIFG 130

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 50.3 bits (120), Expect = 8e-07
 Identities = 26/140 (18%), Positives = 52/140 (37%), Gaps = 17/140 (12%)

Query: 130 ISLPQRNIQELPERLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLP 189
           +++ +  +  LP+ L   ++   ++         ++ L     E L+ L + G   +SLP
Sbjct: 45  LNVGESGLTTLPDCL-PAHITTLVIPD-----NNLTSLPALPPE-LRTLEVSGNQLTSLP 97

Query: 190 SSLGRLINLQTLCLDWCQLEDVAAIGQLKKLEILNLADSNIEQLPLEIGQLTGLRLLDLT 249
                L+ L         L  +        L  L +  + +  LP+    L  L + D  
Sbjct: 98  VLPPGLLELSIFSNPLTHLPAL-----PSGLCKLWIFGNQLTSLPVLPPGLQELSVSDN- 151

Query: 250 NCWSLQVIAPNVISKLSRLE 269
               L  + P + S+L +L 
Sbjct: 152 ---QLASL-PALPSELCKLW 167

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 53.4 bits (128), Expect = 7e-08
 Identities = 17/105 (16%), Positives = 37/105 (35%), Gaps = 11/105 (10%)

Query: 175 LKVLSLIGIHFSSLPSSLGRLINLQTLCLDWCQLEDVAAIGQLKKLEILNLADSNIEQLP 234
           L+ ++      + LP       +L+ L +   QL  +      + LE L+++ + +E LP
Sbjct: 142 LEYINADNNQLTMLPELPT---SLEVLSVRNNQLTFLPE--LPESLEALDVSTNLLESLP 196

Query: 235 LEIGQLTGLR----LLDLTNCWSLQVIAPNVISKLSRLEELYMDN 275
               +                  +  I P  I  L     + +++
Sbjct: 197 AVPVRNHHSEETEIFFRCREN-RITHI-PENILSLDPTCTIILED 239

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 45.0 bits (106), Expect = 4e-05
 Identities = 22/129 (17%), Positives = 44/129 (34%), Gaps = 19/129 (14%)

Query: 163 QISDLFFEGTEELKVLSLIGIHFSSLPSSL--GRLINLQTLCLDWCQLEDV-AAIGQLKK 219
                +F   ++ +  +L G + +   S L    +     L L+   L  +   +    +
Sbjct: 24  GTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRLNLSSLPDNLPP--Q 81

Query: 220 LEILNLADSNIEQLPLEIGQLTGLRLLD---------LTNCWSLQVIAPNVISKL----S 266
           + +L +  + +  LP     L  L   D           +   L V   N ++ L    +
Sbjct: 82  ITVLEITQNALISLPELPASLEYLDACDNRLSTLPELPASLKHLDVDN-NQLTMLPELPA 140

Query: 267 RLEELYMDN 275
            LE +  DN
Sbjct: 141 LLEYINADN 149

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 53.3 bits (128), Expect = 8e-08
 Identities = 31/153 (20%), Positives = 54/153 (35%), Gaps = 22/153 (14%)

Query: 163 QISDL---FFEGTEELKVLSLIGIHFSSLPSSLG---RLINLQTLCLDWCQLEDVAAIG- 215
            ++D          EL+ L L       L        ++ +LQ L +    +      G 
Sbjct: 335 LLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGD 394

Query: 216 --QLKKLEILNLADSNIEQLPLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYM 273
               K L  LN++ + +            +++LDL +   ++ I P  + KL  L+EL +
Sbjct: 395 CSWTKSLLSLNMSSNILTDTIFRCL-PPRIKVLDLHSN-KIKSI-PKQVVKLEALQELNV 451

Query: 274 D-NSFSGWEKVEGGSNASLVELKRLTKLTTLEI 305
             N       V  G         RLT L  + +
Sbjct: 452 ASNQLK---SVPDGI------FDRLTSLQKIWL 475

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 51.4 bits (123), Expect = 3e-07
 Identities = 19/117 (16%), Positives = 36/117 (30%), Gaps = 6/117 (5%)

Query: 165 SDLFFEGTEELKVLSLIGIHFSSLPS-SLGRLINLQTLCLDWCQLEDVA--AIGQLKKLE 221
               +E    + + +        +      ++     L      L D      G L +LE
Sbjct: 292 QSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELE 351

Query: 222 ILNLADSNIEQLPLEIG---QLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDN 275
            L L  + +++L        Q+  L+ LD++             S    L  L M +
Sbjct: 352 TLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSS 408

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 50.2 bits (120), Expect = 7e-07
 Identities = 16/109 (14%), Positives = 49/109 (44%), Gaps = 3/109 (2%)

Query: 169 FEGTEELKVLSLIG--IHFSSLPSSLGRLINLQTLCLDWCQLEDVAAIGQLKKLEILNLA 226
               + L+ L +    + +           +L +L +    L D        ++++L+L 
Sbjct: 370 TTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLH 429

Query: 227 DSNIEQLPLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDN 275
            + I+ +P ++ +L  L+ L++ +   L+ +   +  +L+ L+++++  
Sbjct: 430 SNKIKSIPKQVVKLEALQELNVASN-QLKSVPDGIFDRLTSLQKIWLHT 477

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 45.6 bits (108), Expect = 2e-05
 Identities = 32/246 (13%), Positives = 81/246 (32%), Gaps = 10/246 (4%)

Query: 169 FEGTEELKVLSLIGIHFSSLPSSLGRLINLQTLCLDWCQLEDV---AAIGQLKKLEILNL 225
           F+  +EL+ L L       +       +NL+ L L +   + +      G + +L+ L L
Sbjct: 65  FKFNQELEYLDLSHNKLVKISC--HPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGL 122

Query: 226 ADSNIEQLPLE-IGQLTGLRLLDLTNCWSLQVIAPNVISKL--SRLEELYMDNSFSGWEK 282
           + +++E+  +  I  L   ++L +      +   P  +       L  ++  N    +  
Sbjct: 123 STTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFIL 182

Query: 283 VEGGSNASLVELKRLTKLTTLEIEVRDAEILLPDFVSVELQRYRIRIGDKLEYEIDQLLV 342
                  + +EL  +  +           IL     + +L    +   +       ++L 
Sbjct: 183 DVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQ 242

Query: 343 KSEALRLMMLKGLEKVSILQENDGTKMLLQRTEDLWLVKLEGVQNVVHELDDGEGFPRLK 402
                 +     +  V  LQ     +        L  + +  V + V        +    
Sbjct: 243 LVWHTTVWYFS-ISNVK-LQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFS 300

Query: 403 HLHVES 408
           ++++++
Sbjct: 301 NMNIKN 306

>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A* Length = 549

 Score = 53.1 bits (127), Expect = 9e-08
 Identities = 21/109 (19%), Positives = 37/109 (33%), Gaps = 6/109 (5%)

Query: 2   EKNVYLSIKLSYDFLRSEEAKSMFRLCGLYSEGHAIPVPYLLRYGVGWGLFENVYTLEEA 61
            K++ ++++   + L S+E +S      +   G  IPV                  L++ 
Sbjct: 371 YKSLAMALQRCVEVL-SDEDRSALAFAVVMPPGVDIPVKLWSCVIPVDICSNEEEQLDD- 428

Query: 62  RSRVHRLIDNLKSSCLLLDGD--AEDEVKMHDIIHVVAVSVAAETRMFN 108
              V   +  L     LL G        K+  IIH+    V     + N
Sbjct: 429 --EVADRLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQTIAN 475

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 51.2 bits (123), Expect = 1e-07
 Identities = 26/130 (20%), Positives = 49/130 (37%), Gaps = 13/130 (10%)

Query: 176 KVLSLIGIHFSSLPS-SLGRLINLQTLCLDWCQLEDVAAIG---QLKKLEILNLADSNIE 231
             + L       +P  +      L+ + L   Q+ ++A       L+ L  L L  + I 
Sbjct: 35  TEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAP-DAFQGLRSLNSLVLYGNKIT 93

Query: 232 QLPLEI-GQLTGLRLLDL-TNCWSLQVIAPNVISKLSRLEELYM-DNSFSGWEKVEGGSN 288
           +LP  +   L  L+LL L  N   +  +  +    L  L  L + DN       +  G+ 
Sbjct: 94  ELPKSLFEGLFSLQLLLLNAN--KINCLRVDAFQDLHNLNLLSLYDNKLQ---TIAKGTF 148

Query: 289 ASLVELKRLT 298
           + L  ++ + 
Sbjct: 149 SPLRAIQTMH 158

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 51.1 bits (123), Expect = 2e-07
 Identities = 33/111 (29%), Positives = 55/111 (49%), Gaps = 5/111 (4%)

Query: 169 FEGTEELKVLSLIGIHFSSLPSSL-GRLINLQTLCLDWCQLEDV--AAIGQLKKLEILNL 225
           F+  + L+ L +      +LP  +  +L+NL  L LD  QL+ +       L KL  L+L
Sbjct: 81  FKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSL 140

Query: 226 ADSNIEQLPLEI-GQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDN 275
             + ++ LP  +  +LT L+ L L N   L+ +      KL+ L+ L +DN
Sbjct: 141 GYNELQSLPKGVFDKLTSLKELRLYNN-QLKRVPEGAFDKLTELKTLKLDN 190

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 45.4 bits (108), Expect = 1e-05
 Identities = 32/115 (27%), Positives = 51/115 (44%), Gaps = 12/115 (10%)

Query: 197 NLQTLCLDWCQLE--DVAAIGQLKKLEILNLADSNIEQLPLEI-GQLTGLRLLDLTNCWS 253
           + + L L   +L      A  +L KL +L L D+ ++ LP  I  +L  L  L +T+   
Sbjct: 38  DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDN-K 96

Query: 254 LQVIAPNVISKLSRLEELYMD-NSFSGWEKVEGGSNASLVELKRLT----KLTTL 303
           LQ +   V  +L  L EL +D N       +      SL +L  L+    +L +L
Sbjct: 97  LQALPIGVFDQLVNLAELRLDRNQLK---SLPPRVFDSLTKLTYLSLGYNELQSL 148

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 51.4 bits (123), Expect = 2e-07
 Identities = 37/164 (22%), Positives = 60/164 (36%), Gaps = 16/164 (9%)

Query: 136 NIQELPERLQCPNLQLFLLFRQGYGPVQ-ISDLFFEG-TEELKVLSLIGIHFSSLPSSLG 193
            I+ LP+  +  +LQ  LL  Q    +  I    F G + E  +L L       + +S  
Sbjct: 115 GIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAF 174

Query: 194 RLINLQTLCL-DWCQLEDV--AAIGQLKKLEILNLADSNIEQLPLEI-GQLTGLRLLDLT 249
               L  L L D   LE++            IL+++ + I  LP      L  LR     
Sbjct: 175 NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTY 234

Query: 250 NCWSLQVIAPNVISKLSRLEELYMDN-----SFSGWEKVEGGSN 288
           N   L+ +    + KL  L E  +       +F+ W +     +
Sbjct: 235 N---LKKLPT--LEKLVALMEASLTYPSHCCAFANWRRQISELH 273

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 51.4 bits (123), Expect = 2e-07
 Identities = 28/155 (18%), Positives = 54/155 (34%), Gaps = 14/155 (9%)

Query: 164 ISDLFFEGTEELKVLSLIGIHFSSLPS-SLGRLINLQTLCLDW-CQLEDVAA---IGQLK 218
           I+   F+    L+ L +       LP       +    L +     +  +     +G   
Sbjct: 95  INPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSF 154

Query: 219 KLEILNLADSNIEQLPLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYM----- 273
           +  IL L  + I+++       T L  L+L++  +L+ +  +V    S    L +     
Sbjct: 155 ESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRI 214

Query: 274 ----DNSFSGWEKVEGGSNASLVELKRLTKLTTLE 304
                      +K+   S  +L +L  L KL  L 
Sbjct: 215 HSLPSYGLENLKKLRARSTYNLKKLPTLEKLVALM 249

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 47.9 bits (114), Expect = 3e-06
 Identities = 20/105 (19%), Positives = 39/105 (37%), Gaps = 8/105 (7%)

Query: 176 KVLSLIGIHFSSLPSSLGRLINLQTLCLDWCQLEDV--AAIGQLKKLEILNLADSNIEQL 233
           +V        + +PS L    N   L     +L  +   A      LE + ++ +++ ++
Sbjct: 12  RVFLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEV 69

Query: 234 PLEIG---QLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDN 275
            +E      L  L  + +    +L  I P     L  L+ L + N
Sbjct: 70  -IEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISN 113

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 50.4 bits (121), Expect = 3e-07
 Identities = 18/83 (21%), Positives = 37/83 (44%), Gaps = 4/83 (4%)

Query: 197 NLQTLCLDWCQLEDV--AAIGQLKKLEILNLADSN-IEQLPLEI-GQLTGLRLLDLTNCW 252
           + QTL L    L  +   A   L  +  + ++    ++QL       L+ +  +++ N  
Sbjct: 32  STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTR 91

Query: 253 SLQVIAPNVISKLSRLEELYMDN 275
           +L  I P+ + +L  L+ L + N
Sbjct: 92  NLTYIDPDALKELPLLKFLGIFN 114

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 43.1 bits (102), Expect = 7e-05
 Identities = 18/119 (15%), Positives = 33/119 (27%), Gaps = 7/119 (5%)

Query: 164 ISDLFFEGTEELKVLSLIGIHFSSLP--SSLGRLINLQTLCL-DWCQLEDVAA---IGQL 217
           I     +    LK L +        P  + +        L + D   +  +      G  
Sbjct: 96  IDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLC 155

Query: 218 KKLEILNLADSNIEQLPLEIGQLTGLRLLDLTNCWSLQVIAPNVISKL-SRLEELYMDN 275
            +   L L ++    +       T L  + L     L VI  +    + S    L +  
Sbjct: 156 NETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQ 214

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 47.8 bits (114), Expect = 7e-07
 Identities = 26/116 (22%), Positives = 49/116 (42%), Gaps = 6/116 (5%)

Query: 163 QISDLFFEGTEELKVLSLIGIHFSSLPSSLGRLINLQTLCLDWCQLEDVAAIGQLKKLEI 222
           ++ +       EL VL     +   +       +NL+ L L    L  V+ + +L KL+ 
Sbjct: 17  ELRNRTPAAVREL-VLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKK 75

Query: 223 LNLADSNIEQL-PLEIGQLTGLRLLDLTNCW--SLQVIAPNVISKLSRLEELYMDN 275
           L L+++ I     +   +L  L  L+L+      +  + P  + KL  L+ L + N
Sbjct: 76  LELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEP--LKKLECLKSLDLFN 129

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 48.7 bits (116), Expect = 2e-06
 Identities = 30/161 (18%), Positives = 61/161 (37%), Gaps = 31/161 (19%)

Query: 185 FSSLPSSLGRLINLQTLCLDWCQLEDV---AAIGQLKKLEILNLADSNIEQLPLEI-GQL 240
             ++P SL        L L    L  +       +L  L  L L+ +++  +  E    +
Sbjct: 30  LPNVPQSLPS--YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPV 87

Query: 241 TGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDN---------SFSGWEKVEGGSNASL 291
             LR LDL++   L  +   + S L  LE L + N         +F             +
Sbjct: 88  PNLRYLDLSSN-HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFED-----------M 135

Query: 292 VELKRLT----KLTTLEIEVRDAEILLPDFVSVELQRYRIR 328
            +L++L     +++   +E+      LP  + ++L   +++
Sbjct: 136 AQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK 176

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 42.9 bits (101), Expect = 1e-04
 Identities = 21/87 (24%), Positives = 37/87 (42%), Gaps = 7/87 (8%)

Query: 169 FEGTEELKVLSLIGIHFSSLPS-SLGRLINLQTLCLDWCQLEDV-----AAIGQLKKLEI 222
           F   + L+VL L   H   +   +   +  LQ L L   Q+            +L KL +
Sbjct: 108 FSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLML 167

Query: 223 LNLADSNIEQLPLE-IGQLTGLRLLDL 248
           L+L+ + +++LPL  + +L       L
Sbjct: 168 LDLSSNKLKKLPLTDLQKLPAWVKNGL 194

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 49.2 bits (117), Expect = 2e-06
 Identities = 29/169 (17%), Positives = 50/169 (29%), Gaps = 17/169 (10%)

Query: 146 CPNLQLFLLFRQGYGPVQISDL--FFEGTEELKVLSLIGIHFSSLPSSLGRLINLQTLCL 203
             +L++   +   +  +   DL         L  + +       L        NL+  C 
Sbjct: 191 NTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCG 250

Query: 204 DWCQLED-----VAAIGQLKKLEILNLADSNIEQLPLEIGQLTGLRLLDLTNCWSLQVIA 258
                +         +   +KL  L L+     ++P+       +R LDL          
Sbjct: 251 GSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDH 310

Query: 259 PNVISKLSRLEELYMDNSFSGWEKVEGGSNASLVEL-KRLTKLTTLEIE 306
             +I K   LE L   N            +  L  L +   +L  L IE
Sbjct: 311 CTLIQKCPNLEVLETRNVI---------GDRGLEVLAQYCKQLKRLRIE 350

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 46.2 bits (110), Expect = 2e-06
 Identities = 25/108 (23%), Positives = 43/108 (39%), Gaps = 7/108 (6%)

Query: 173 EELKVLSLIGIHFS--SLPSSLGRLINLQTLCLDWCQLEDVAAIGQLKKLEILNLADSNI 230
            ++K L L     +   L         L+ L      L  +A + +L KL+ L L+D+ +
Sbjct: 17  SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRV 76

Query: 231 EQL-PLEIGQLTGLRLLDLTNC--WSLQVIAPNVISKLSRLEELYMDN 275
                +   +   L  L+L+      L  I P  + KL  L+ L + N
Sbjct: 77  SGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEP--LKKLENLKSLDLFN 122

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 46.2 bits (110), Expect = 6e-06
 Identities = 35/118 (29%), Positives = 53/118 (44%), Gaps = 7/118 (5%)

Query: 163 QISDLFFEGTEELKVLSLIGIHFSSLPSSL-GRLINLQTLCLDWCQLEDVAA--IGQLKK 219
            +SD  F G  +L  L+L      +L + +   L  L TL L   QL  +       L +
Sbjct: 49  TLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQ 108

Query: 220 LEILNLADSNIEQLPLEI-GQLTGLRLLDL-TNCWSLQVIAPNVISKLSRLEELYMDN 275
           L+ L L  + ++ LP  +  +LT L+ L L TN   LQ I      KL+ L+ L +  
Sbjct: 109 LDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTN--QLQSIPAGAFDKLTNLQTLSLST 164

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 46.2 bits (110), Expect = 7e-06
 Identities = 31/105 (29%), Positives = 52/105 (49%), Gaps = 7/105 (6%)

Query: 176 KVLSLIGIHFSSLPSS-LGRLINLQTLCLDWCQLEDVAA--IGQLKKLEILNLADSNIEQ 232
           + L L     ++L  +    L  L  L LD+ QL+ ++A     L +L  L LA++ +  
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLAS 97

Query: 233 LPLEI-GQLTGLRLLDL-TNCWSLQVIAPNVISKLSRLEELYMDN 275
           LPL +   LT L  L L  N   L+ +   V  +L++L+EL ++ 
Sbjct: 98  LPLGVFDHLTQLDKLYLGGN--QLKSLPSGVFDRLTKLKELRLNT 140

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 47.2 bits (112), Expect = 7e-06
 Identities = 21/113 (18%), Positives = 50/113 (44%), Gaps = 8/113 (7%)

Query: 169 FEGTEELKVLSLIGIHFSSLPSSL-----GRLINLQTLCLDWCQLEDVAAIGQLKKLEIL 223
              T+ +  L  + +  +SL S           ++  L L    L          K+++L
Sbjct: 396 ALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVL 455

Query: 224 NLADSNIEQLPLEIGQLTGLRLLDL-TNCWSLQVIAPNVISKLSRLEELYMDN 275
           +L ++ I  +P ++  L  L+ L++ +N   L+ +   V  +L+ L+ +++ +
Sbjct: 456 DLHNNRIMSIPKDVTHLQALQELNVASN--QLKSVPDGVFDRLTSLQYIWLHD 506

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 46.4 bits (110), Expect = 1e-05
 Identities = 21/123 (17%), Positives = 44/123 (35%), Gaps = 14/123 (11%)

Query: 163 QISDLF---FEGTEELKVLSLIGIHFSSLPSSLGRLINLQTLCLDWCQLEDVAAI----- 214
             +D         + L+ L L      +         N+ +L      L  + +      
Sbjct: 364 VFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRT 423

Query: 215 -GQLKKLEILNLADSNIEQLPLEIGQLTG-LRLLDLTNCWSLQVIAPNVISKLSRLEELY 272
               + + +LNL+ + +         L   +++LDL N   +  I P  ++ L  L+EL 
Sbjct: 424 CAWAESILVLNLSSNMLTGSVFR--CLPPKVKVLDLHNN-RIMSI-PKDVTHLQALQELN 479

Query: 273 MDN 275
           + +
Sbjct: 480 VAS 482

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 45.8 bits (109), Expect = 1e-05
 Identities = 36/118 (30%), Positives = 59/118 (50%), Gaps = 6/118 (5%)

Query: 163 QISDL-FFEGTEELKVLSLIGIHFSSLPSSL-GRLINLQTLCLDWCQLEDVAA--IGQLK 218
           ++ D+   +    L  L L G    SLP+ +  +L NL+ L L   QL+ +      +L 
Sbjct: 74  KLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLT 133

Query: 219 KLEILNLADSNIEQLPLEI-GQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDN 275
            L  LNLA + ++ LP  +  +LT L  LDL +   LQ +   V  KL++L++L +  
Sbjct: 134 NLTYLNLAHNQLQSLPKGVFDKLTNLTELDL-SYNQLQSLPEGVFDKLTQLKDLRLYQ 190

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 45.4 bits (108), Expect = 1e-05
 Identities = 40/183 (21%), Positives = 68/183 (37%), Gaps = 37/183 (20%)

Query: 131 SLPQRNIQELPERLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPS 190
               +N     +++   N  +  +               +    ++ L+L G     + +
Sbjct: 33  DAVTQNELNSIDQIIANNSDIKSV------QG------IQYLPNVRYLALGGNKLHDISA 80

Query: 191 SLGRLINLQTLCLDWCQLEDV--AAIGQLKKLEILNLADSNIEQLPLEI-GQLTGLRLLD 247
            L  L NL  L L   QL+ +      +L  L+ L L ++ ++ LP  +  +LT L  L+
Sbjct: 81  -LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLN 139

Query: 248 L-TNCWSLQVIAPNVISKLSRLEELYMDNSFSGWEKVEGGSNASLVEL-----KRLTKLT 301
           L  N   LQ +   V  KL+ L EL +              N  L  L      +LT+L 
Sbjct: 140 LAHN--QLQSLPKGVFDKLTNLTELDLSY------------N-QLQSLPEGVFDKLTQLK 184

Query: 302 TLE 304
            L 
Sbjct: 185 DLR 187

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 44.3 bits (105), Expect = 2e-05
 Identities = 20/106 (18%), Positives = 40/106 (37%), Gaps = 5/106 (4%)

Query: 173 EELKVLSLIGIHFSSLPSSLGRLINLQTLCLDWCQLEDVAAIGQLKKLEILNLADSNIEQ 232
              + L L G     + +    L     +     ++  +     L++L+ L + ++ I +
Sbjct: 19  VRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICR 78

Query: 233 LPLEIGQ-LTGLRLLDLTNCW--SLQVIAPNVISKLSRLEELYMDN 275
           +   + Q L  L  L LTN     L  + P  ++ L  L  L +  
Sbjct: 79  IGEGLDQALPDLTELILTNNSLVELGDLDP--LASLKSLTYLCILR 122

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 44.1 bits (104), Expect = 6e-05
 Identities = 35/181 (19%), Positives = 63/181 (34%), Gaps = 29/181 (16%)

Query: 145 QCPNLQLFLL--FRQGYGPVQISDL--FFEGTEELKVLSLI-GIHFSSLPSSLGRLINLQ 199
           + P L+      +     P   S L     G +EL+ LS       + LP+       L 
Sbjct: 233 RAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLT 292

Query: 200 TLCLDWCQLED---VAAIGQLKKLEILNLADSNIEQLPLE--IGQLTGLRLLDLTNCWSL 254
           TL L +  ++    V  + Q  KL+ L + D  IE   LE        LR L +      
Sbjct: 293 TLNLSYATVQSYDLVKLLCQCPKLQRLWVLD-YIEDAGLEVLASTCKDLRELRVFPSEPF 351

Query: 255 QVIAPNVIS---------KLSRLEELYMDNSFSGWEKVEGGSNASLVEL-KRLTKLTTLE 304
            +     ++            +LE +          ++   +NA+L+ + +    +T   
Sbjct: 352 VMEPNVALTEQGLVSVSMGCPKLESV-----LYFCRQM---TNAALITIARNRPNMTRFR 403

Query: 305 I 305
           +
Sbjct: 404 L 404

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 42.9 bits (101), Expect = 1e-04
 Identities = 18/104 (17%), Positives = 36/104 (34%), Gaps = 5/104 (4%)

Query: 175 LKVLSLIGIHFSSLPSSLGRLINLQTLCLDWCQLED---VAAIGQLKKLEILNLADSNIE 231
           +              +       +Q + L    +E       + Q  KL+ L+L    + 
Sbjct: 72  VIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLS 131

Query: 232 QLPLE-IGQLTGLRLLDLTNCWSLQVIAPNVISK-LSRLEELYM 273
              +  + + + L  L+L+ C      A   +    SRL+EL +
Sbjct: 132 DPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNL 175

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 42.0 bits (98), Expect = 2e-04
 Identities = 25/112 (22%), Positives = 41/112 (36%), Gaps = 11/112 (9%)

Query: 141 PERLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPSSLGRLINLQT 200
              L+C             G   +++L+ E  + L+ L             L  L  L+ 
Sbjct: 10  SSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLE---------LRDLRGLGELRN 60

Query: 201 LCLDWCQLEDVA--AIGQLKKLEILNLADSNIEQLPLEIGQLTGLRLLDLTN 250
           L +    L  VA  A     +L  LNL+ + +E L  +  Q   L+ L L+ 
Sbjct: 61  LTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSG 112

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 42.2 bits (99), Expect = 2e-04
 Identities = 28/160 (17%), Positives = 49/160 (30%), Gaps = 16/160 (10%)

Query: 134 QRNIQELPERLQCPNLQLFLL--FRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLP-S 190
                        P+L +  L           +++L       LKVLS+   H  +    
Sbjct: 108 TGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCE 167

Query: 191 SLGRLINLQTLCLDWCQLEDVAAI------GQLKKLEILNLADSNIEQLPLEIGQLTG-- 242
            +     L TL L          +       +   L++L L ++ +E        L    
Sbjct: 168 QVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAAR 227

Query: 243 --LRLLDLTNCWSLQ-VIAPNVISKLSRLEELYM-DNSFS 278
             L+ LDL++  SL+           S+L  L +      
Sbjct: 228 VQLQGLDLSHN-SLRDAAGAPSCDWPSQLNSLNLSFTGLK 266

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 40.3 bits (94), Expect = 8e-04
 Identities = 26/113 (23%), Positives = 44/113 (38%), Gaps = 13/113 (11%)

Query: 175 LKVLSLIGIHFSSLP----SSLGRLINLQTLCLDWCQLEDVAAIGQ---LKKLEILNLAD 227
           L+VL+L      +      +     + LQ L L    L D A         +L  LNL+ 
Sbjct: 203 LQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSF 262

Query: 228 SNIEQLPLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMD-NSFSG 279
           + ++Q+P  +     L +LDL+    L         +L ++  L +  N F  
Sbjct: 263 TGLKQVPKGLPA--KLSVLDLSYN-RLDRNPS--PDELPQVGNLSLKGNPFLD 310

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 40.4 bits (95), Expect = 4e-04
 Identities = 30/117 (25%), Positives = 47/117 (40%), Gaps = 6/117 (5%)

Query: 163 QISDLFFEGTEELKVLSLIGIHFSSLPSSL-GRLINLQTLCLDWCQLEDVAAIG---QLK 218
           ++    F+    LK L L      +LP  +   L  L  L L   QL  + +     +L 
Sbjct: 54  KLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPS-AVFDRLV 112

Query: 219 KLEILNLADSNIEQLPLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDN 275
            L+ L +  + + +LP  I +LT L  L L     L+ I      +LS L   Y+  
Sbjct: 113 HLKELFMCCNKLTELPRGIERLTHLTHLALDQN-QLKSIPHGAFDRLSSLTHAYLFG 168

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	421
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.94
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.94
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.94
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.93
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.93
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.93
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.93
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.93
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.93
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.93
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.93
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.92
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.92
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.92
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.92
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.92
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.91
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.91
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.91
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.91
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.91
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.91
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.91
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.91
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.91
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.91
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.91
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.9
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.9
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.9
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.9
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.9
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.9
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.9
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.9
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.9
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.9
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.9
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.9
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.89
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.89
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.89
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.89
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.89
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.89
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.89
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.89
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.89
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.89
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.88
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.88
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.88
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.88
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.87
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.87
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.86
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.85
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.85
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.84
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.84
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.84
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.83
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.83
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.83
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.82
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.82
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.82
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.81
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.81
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.81
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.81
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.8
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.8
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.8
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.79
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.79
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.79
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.78
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.78
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.78
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.77
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.77
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.76
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.76
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.76
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.76
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.75
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.74
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.73
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.72
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.72
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.72
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.71
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.7
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.69
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.69
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.69
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.67
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.67
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.66
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.66
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.66
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.65
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.65
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.65
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.65
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.63
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.63
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.63
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.62
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.62
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.6
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.6
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.6
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.58
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.57
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.56
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.55
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.55
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.53
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.52
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.5
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.48
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.47
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.45
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.45
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.45
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.44
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.44
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.44
2a5y_B	549	CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis	99.37
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.37
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.36
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.36
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.27
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.24
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.23
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.2
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.17
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.16
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.11
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.1
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	99.02
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.02
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.94
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.89
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	98.84
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.77
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.65
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.55
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.52
1z6t_A	591	APAF-1, apoptotic protease activating factor 1; ca	98.46
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.37
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.3
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.28
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.19
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.08
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.08
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.05
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.97
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.94
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	96.97
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	96.85
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.55
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	95.68
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	95.14
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	94.47

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.94  E-value=3.3e-25  Score=206.87  Aligned_cols=194  Identities=18%  Similarity=0.174  Sum_probs=126.0

Q ss_pred             ccccccCccCCCeEEEcCCCCCccCCcccCCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCCChhhhcc
Q 038338          116 EKKMEETIRKDPIAISLPQRNIQELPERLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPSSLGRL  195 (421)
Q Consensus       116 ~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l  195 (421)
                      ..++.+..++++++|++++|.+..++....+++|++|++++|.+  ..++.  +..+++|++|++++|.+..++. +..+
T Consensus        57 ~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i--~~~~~--~~~l~~L~~L~l~~n~i~~~~~-~~~l  131 (347)
T 4fmz_A           57 ASIQGIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKI--TDISA--LQNLTNLRELYLNEDNISDISP-LANL  131 (347)
T ss_dssp             CCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCC--CCCGG--GTTCTTCSEEECTTSCCCCCGG-GTTC
T ss_pred             ccchhhhhcCCccEEEccCCccccchhhhcCCcCCEEEccCCcc--cCchH--HcCCCcCCEEECcCCcccCchh-hccC
Confidence            33445666778888888888877777666788888888888865  34432  5778888888888888777766 7777


Q ss_pred             cCCcEEEcccccCCC-cccccCcCCCCEEEeeCCCCcccchhhcCCCCCCEEeccCCcCCcccchhhhcCCCCCcEEEcc
Q 038338          196 INLQTLCLDWCQLED-VAAIGQLKKLEILNLADSNIEQLPLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMD  274 (421)
Q Consensus       196 ~~L~~L~l~~~~~~~-~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~  274 (421)
                      ++|++|++++|.... +..+..+++|++|++++|.+..++. +..+++|++|++++|. +..++.  +..+++|+.|+++
T Consensus       132 ~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~-l~~~~~--~~~l~~L~~L~l~  207 (347)
T 4fmz_A          132 TKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQ-IEDISP--LASLTSLHYFTAY  207 (347)
T ss_dssp             TTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSC-CCCCGG--GGGCTTCCEEECC
T ss_pred             CceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCc-cccccc--ccCCCccceeecc
Confidence            888888888875444 5567777777777777777776654 6777777777777753 344443  5566666666666


Q ss_pred             cCCCCCccccCCCCcChhhhcCCCCCCEEEEEecCccccCCcccccCCceEEEE
Q 038338          275 NSFSGWEKVEGGSNASLVELKRLTKLTTLEIEVRDAEILLPDFVSVELQRYRIR  328 (421)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~  328 (421)
                      +|.+.....          +..+++|++|++++|.+..++....+++|+.|++.
T Consensus       208 ~n~l~~~~~----------~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~  251 (347)
T 4fmz_A          208 VNQITDITP----------VANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIG  251 (347)
T ss_dssp             SSCCCCCGG----------GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECC
T ss_pred             cCCCCCCch----------hhcCCcCCEEEccCCccCCCcchhcCCCCCEEECC
Confidence            665544321          34444455555544444444432233444444443

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.94  E-value=1e-25  Score=218.23  Aligned_cols=286  Identities=18%  Similarity=0.176  Sum_probs=194.9

Q ss_pred             CcccccccCccCCCeEEEcCCCCCccC-Cc-ccCCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCC-Ch
Q 038338          114 DLEKKMEETIRKDPIAISLPQRNIQEL-PE-RLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSL-PS  190 (421)
Q Consensus       114 ~~~~~~~~~~~~~l~~l~l~~~~~~~l-~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~  190 (421)
                      .+..+|.  ..+++++|++++|.+..+ +. ..++++|++|++++|.. ...++...|.++++|++|++++|.+..+ |.
T Consensus        21 ~l~~lp~--l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~-~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~   97 (455)
T 3v47_A           21 GLHQVPE--LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTP-GLVIRNNTFRGLSSLIILKLDYNQFLQLETG   97 (455)
T ss_dssp             CCSSCCC--CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCST-TCEECTTTTTTCTTCCEEECTTCTTCEECTT
T ss_pred             CcccCCC--CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcc-cceECcccccccccCCEEeCCCCccCccChh
Confidence            3444444  447899999999988665 33 33899999999999986 5567666678899999999999998874 77


Q ss_pred             hhhcccCCcEEEcccccCCC--ccc--ccCcCCCCEEEeeCCCCccc-chh-hcCCCCCCEEeccCCcCCcccchhhhc-
Q 038338          191 SLGRLINLQTLCLDWCQLED--VAA--IGQLKKLEILNLADSNIEQL-PLE-IGQLTGLRLLDLTNCWSLQVIAPNVIS-  263 (421)
Q Consensus       191 ~i~~l~~L~~L~l~~~~~~~--~~~--~~~l~~L~~L~l~~~~l~~l-p~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~-  263 (421)
                      .++.+.+|++|++++|.+.+  +..  ++++++|++|++++|.+..+ |.. +..+++|++|++++|...+..+.. +. 
T Consensus        98 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-l~~  176 (455)
T 3v47_A           98 AFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEED-LLN  176 (455)
T ss_dssp             TTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTT-SGG
T ss_pred             hccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhh-hhc
Confidence            88999999999999999886  444  88899999999999998866 444 788999999999987544333322 22 


Q ss_pred             ---------------------------------CCCCCcEEEcccCCCCCccccC-------------------------
Q 038338          264 ---------------------------------KLSRLEELYMDNSFSGWEKVEG-------------------------  285 (421)
Q Consensus       264 ---------------------------------~l~~L~~L~l~~~~~~~~~~~~-------------------------  285 (421)
                                                       .+++|++|++++|.+....+..                         
T Consensus       177 l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  256 (455)
T 3v47_A          177 FQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSF  256 (455)
T ss_dssp             GTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCT
T ss_pred             cccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeecccccccccc
Confidence                                             2356777777777654321100                         


Q ss_pred             --------------------------C----CCcChhhhcCCCCCCEEEEEecCccccCC-cc-cccCCceEEEEEcCCc
Q 038338          286 --------------------------G----SNASLVELKRLTKLTTLEIEVRDAEILLP-DF-VSVELQRYRIRIGDKL  333 (421)
Q Consensus       286 --------------------------~----~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~-~~~~L~~L~l~~~~~~  333 (421)
                                                .    .......++.+++|+.|++++|.+..++. .+ .+++|+.|+++.+ ..
T Consensus       257 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l  335 (455)
T 3v47_A          257 GHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQN-FL  335 (455)
T ss_dssp             TCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CC
T ss_pred             chhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCC-cc
Confidence                                      0    00112345666777777777777665533 33 4477777777633 33


Q ss_pred             cchhhhhhchhhhceeEEEcCCcccccccchhHHHHhhhcccEEEeccccCcccccccccccCCCCCccEEEEeecC
Q 038338          334 EYEIDQLLVKSEALRLMMLKGLEKVSILQENDGTKMLLQRTEDLWLVKLEGVQNVVHELDDGEGFPRLKHLHVESCY  410 (421)
Q Consensus       334 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~i~~c~  410 (421)
                      ....+..++.+++|+.|++++|.+.  ...+.++..+ ++|++|++++|......+..+.   .+++|+.|++++|+
T Consensus       336 ~~~~~~~~~~l~~L~~L~Ls~N~l~--~~~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~---~l~~L~~L~l~~N~  406 (455)
T 3v47_A          336 GSIDSRMFENLDKLEVLDLSYNHIR--ALGDQSFLGL-PNLKELALDTNQLKSVPDGIFD---RLTSLQKIWLHTNP  406 (455)
T ss_dssp             CEECGGGGTTCTTCCEEECCSSCCC--EECTTTTTTC-TTCCEEECCSSCCSCCCTTTTT---TCTTCCEEECCSSC
T ss_pred             CCcChhHhcCcccCCEEECCCCccc--ccChhhcccc-ccccEEECCCCccccCCHhHhc---cCCcccEEEccCCC
Confidence            4344566777777777777777642  2234556665 7788888877765433233233   77788888887664

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.94  E-value=8.6e-26  Score=232.20  Aligned_cols=247  Identities=20%  Similarity=0.148  Sum_probs=170.3

Q ss_pred             CCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCC-CChhhhcccCCcEEEcccccCCC--cccccCcCCCCE
Q 038338          146 CPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSS-LPSSLGRLINLQTLCLDWCQLED--VAAIGQLKKLEI  222 (421)
Q Consensus       146 ~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-lp~~i~~l~~L~~L~l~~~~~~~--~~~~~~l~~L~~  222 (421)
                      +++|+.|++++|.+ .+.+|..+ .++++|++|++++|.+.. +|..++.+++|++|++++|.+..  |..++.+++|++
T Consensus       393 ~~~L~~L~L~~n~l-~~~~p~~l-~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~  470 (768)
T 3rgz_A          393 KNTLQELYLQNNGF-TGKIPPTL-SNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLET  470 (768)
T ss_dssp             TCCCCEEECCSSEE-EEECCGGG-GGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCE
T ss_pred             cCCccEEECCCCcc-ccccCHHH-hcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceE
Confidence            45566666666654 33444443 667777777777776653 66667777777777777777664  666777777777


Q ss_pred             EEeeCCCCc-ccchhhcCCCCCCEEeccCCcCCcccchhhhcCCCCCcEEEcccCCCCCccccCCCCcChhhhcCCCCCC
Q 038338          223 LNLADSNIE-QLPLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNSFSGWEKVEGGSNASLVELKRLTKLT  301 (421)
Q Consensus       223 L~l~~~~l~-~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~  301 (421)
                      |++++|++. .+|..++.+++|++|++++|...+.+|.. ++.+++|++|++++|.+....+        ..++.+++|+
T Consensus       471 L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~-~~~l~~L~~L~L~~N~l~~~~p--------~~l~~l~~L~  541 (768)
T 3rgz_A          471 LILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKW-IGRLENLAILKLSNNSFSGNIP--------AELGDCRSLI  541 (768)
T ss_dssp             EECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGG-GGGCTTCCEEECCSSCCEEECC--------GGGGGCTTCC
T ss_pred             EEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChH-HhcCCCCCEEECCCCcccCcCC--------HHHcCCCCCC
Confidence            777777766 56666777777777777776655566654 6677777777777776654443        5677777777


Q ss_pred             EEEEEecCcc-ccCCcc---------------------------------------------------------------
Q 038338          302 TLEIEVRDAE-ILLPDF---------------------------------------------------------------  317 (421)
Q Consensus       302 ~L~l~~~~~~-~~~~~~---------------------------------------------------------------  317 (421)
                      .|++++|.+. .+|..+                                                               
T Consensus       542 ~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~  621 (768)
T 3rgz_A          542 WLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYG  621 (768)
T ss_dssp             EEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEE
T ss_pred             EEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceec
Confidence            7777777653 343321                                                               


Q ss_pred             --------cccCCceEEEEEcCCccchhhhhhchhhhceeEEEcCCcccccccchhHHHHhhhcccEEEeccccCccccc
Q 038338          318 --------VSVELQRYRIRIGDKLEYEIDQLLVKSEALRLMMLKGLEKVSILQENDGTKMLLQRTEDLWLVKLEGVQNVV  389 (421)
Q Consensus       318 --------~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  389 (421)
                              .+++|+.|+++ .+.....+|..++.+++|+.|++++|.+  ...+|..++++ ++|++|++++|...+.+|
T Consensus       622 g~~~~~~~~l~~L~~LdLs-~N~l~g~ip~~l~~l~~L~~L~Ls~N~l--~g~ip~~l~~L-~~L~~LdLs~N~l~g~ip  697 (768)
T 3rgz_A          622 GHTSPTFDNNGSMMFLDMS-YNMLSGYIPKEIGSMPYLFILNLGHNDI--SGSIPDEVGDL-RGLNILDLSSNKLDGRIP  697 (768)
T ss_dssp             EECCCSCSSSBCCCEEECC-SSCCBSCCCGGGGGCTTCCEEECCSSCC--CSCCCGGGGGC-TTCCEEECCSSCCEECCC
T ss_pred             ccCchhhhccccccEEECc-CCcccccCCHHHhccccCCEEeCcCCcc--CCCCChHHhCC-CCCCEEECCCCcccCcCC
Confidence                    12567777776 4455556778888888888888888873  44567777877 888888888888877888


Q ss_pred             ccccccCCCCCccEEEEeecC
Q 038338          390 HELDDGEGFPRLKHLHVESCY  410 (421)
Q Consensus       390 ~~~~~~~~~~~L~~L~i~~c~  410 (421)
                      ..+.   ++++|++|++++|+
T Consensus       698 ~~l~---~l~~L~~L~ls~N~  715 (768)
T 3rgz_A          698 QAMS---ALTMLTEIDLSNNN  715 (768)
T ss_dssp             GGGG---GCCCCSEEECCSSE
T ss_pred             hHHh---CCCCCCEEECcCCc
Confidence            7776   88888888888874

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.93  E-value=9.9e-25  Score=203.61  Aligned_cols=268  Identities=18%  Similarity=0.160  Sum_probs=221.5

Q ss_pred             CcccccccCccCCCeEEEcCCCCCccCCcccCCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCCChhhh
Q 038338          114 DLEKKMEETIRKDPIAISLPQRNIQELPERLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPSSLG  193 (421)
Q Consensus       114 ~~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~  193 (421)
                      .+...+.+..++++++|++++|.+..++....+++|+.|++++|.+  ..++.  +..+++|++|++++|.....+..+.
T Consensus        77 ~i~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~l~~n~i--~~~~~--~~~l~~L~~L~l~~n~~~~~~~~~~  152 (347)
T 4fmz_A           77 QITDISPLSNLVKLTNLYIGTNKITDISALQNLTNLRELYLNEDNI--SDISP--LANLTKMYSLNLGANHNLSDLSPLS  152 (347)
T ss_dssp             CCCCCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEECTTSCC--CCCGG--GTTCTTCCEEECTTCTTCCCCGGGT
T ss_pred             ccccchhhhcCCcCCEEEccCCcccCchHHcCCCcCCEEECcCCcc--cCchh--hccCCceeEEECCCCCCcccccchh
Confidence            3444455788999999999999998888777999999999999986  44554  5789999999999996655455599


Q ss_pred             cccCCcEEEcccccCCCcccccCcCCCCEEEeeCCCCcccchhhcCCCCCCEEeccCCcCCcccchhhhcCCCCCcEEEc
Q 038338          194 RLINLQTLCLDWCQLEDVAAIGQLKKLEILNLADSNIEQLPLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYM  273 (421)
Q Consensus       194 ~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l  273 (421)
                      .+++|++|++++|.+.....+..+++|++|++++|.+..++. +..+++|+++++++|. +...+.  +..+++|++|++
T Consensus       153 ~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~-l~~~~~--~~~~~~L~~L~l  228 (347)
T 4fmz_A          153 NMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDISP-LASLTSLHYFTAYVNQ-ITDITP--VANMTRLNSLKI  228 (347)
T ss_dssp             TCTTCCEEECCSSCCCCCGGGGGCTTCSEEECTTSCCCCCGG-GGGCTTCCEEECCSSC-CCCCGG--GGGCTTCCEEEC
T ss_pred             hCCCCcEEEecCCCcCCchhhccCCCCCEEEccCCccccccc-ccCCCccceeecccCC-CCCCch--hhcCCcCCEEEc
Confidence            999999999999998884449999999999999999998876 8899999999999964 445554  789999999999


Q ss_pred             ccCCCCCccccCCCCcChhhhcCCCCCCEEEEEecCccccCCcccccCCceEEEEEcCCccchhhhhhchhhhceeEEEc
Q 038338          274 DNSFSGWEKVEGGSNASLVELKRLTKLTTLEIEVRDAEILLPDFVSVELQRYRIRIGDKLEYEIDQLLVKSEALRLMMLK  353 (421)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~  353 (421)
                      ++|.+....          .+..+++|++|++++|.+..++....+++|+.|+++.+.....   +.+..+++|+.|+++
T Consensus       229 ~~n~l~~~~----------~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~L~  295 (347)
T 4fmz_A          229 GNNKITDLS----------PLANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGSNQISDI---SVLNNLSQLNSLFLN  295 (347)
T ss_dssp             CSSCCCCCG----------GGTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCC---GGGGGCTTCSEEECC
T ss_pred             cCCccCCCc----------chhcCCCCCEEECCCCccCCChhHhcCCCcCEEEccCCccCCC---hhhcCCCCCCEEECc
Confidence            999877553          2788999999999999998876555679999999985543332   458899999999999


Q ss_pred             CCcccccccchhHHHHhhhcccEEEeccccCcccccccccccCCCCCccEEEEeecC
Q 038338          354 GLEKVSILQENDGTKMLLQRTEDLWLVKLEGVQNVVHELDDGEGFPRLKHLHVESCY  410 (421)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~i~~c~  410 (421)
                      +|.+  ....+..+..+ ++|++|++++|+.....+  +.   .+++|+.|++++|+
T Consensus       296 ~n~l--~~~~~~~l~~l-~~L~~L~L~~n~l~~~~~--~~---~l~~L~~L~l~~N~  344 (347)
T 4fmz_A          296 NNQL--GNEDMEVIGGL-TNLTTLFLSQNHITDIRP--LA---SLSKMDSADFANQV  344 (347)
T ss_dssp             SSCC--CGGGHHHHHTC-TTCSEEECCSSSCCCCGG--GG---GCTTCSEESSSCC-
T ss_pred             CCcC--CCcChhHhhcc-ccCCEEEccCCccccccC--hh---hhhccceeehhhhc
Confidence            9884  33455667777 999999999998655444  44   89999999999985

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.93  E-value=1.2e-25  Score=207.76  Aligned_cols=222  Identities=20%  Similarity=0.221  Sum_probs=162.6

Q ss_pred             CCCccEEEccCCCCCCCChhhhcccCCcEEEcccccCCC-cccccCcCCCCEEEeeCCCCcccchhhcCCCCCCEEeccC
Q 038338          172 TEELKVLSLIGIHFSSLPSSLGRLINLQTLCLDWCQLED-VAAIGQLKKLEILNLADSNIEQLPLEIGQLTGLRLLDLTN  250 (421)
Q Consensus       172 l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~-~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~  250 (421)
                      ..++++|+++++.++.+|..++.+.+|++|++++|.+.. |..++++++|++|++++|.+..+|..++.+++|++|++++
T Consensus        80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~  159 (328)
T 4fcg_A           80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRA  159 (328)
T ss_dssp             STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEE
T ss_pred             ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCC
Confidence            466777777777777777777777777777777777666 6667777777777777777777777777777777777777


Q ss_pred             CcCCcccchhh--------hcCCCCCcEEEcccCCCCCccccCCCCcChhhhcCCCCCCEEEEEecCccccCCcc-cccC
Q 038338          251 CWSLQVIAPNV--------ISKLSRLEELYMDNSFSGWEKVEGGSNASLVELKRLTKLTTLEIEVRDAEILLPDF-VSVE  321 (421)
Q Consensus       251 ~~~~~~~~~~~--------l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~  321 (421)
                      |...+.+|...        ++.+++|++|++++|.+...+         ..++++++|++|++++|.+..+|..+ .+++
T Consensus       160 n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp---------~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~  230 (328)
T 4fcg_A          160 CPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLP---------ASIANLQNLKSLKIRNSPLSALGPAIHHLPK  230 (328)
T ss_dssp             ETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCC---------GGGGGCTTCCEEEEESSCCCCCCGGGGGCTT
T ss_pred             CCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcch---------HhhcCCCCCCEEEccCCCCCcCchhhccCCC
Confidence            66666666541        224788888888887766322         45777888888888888887777766 4488


Q ss_pred             CceEEEEEcCCccchhhhhhchhhhceeEEEcCCcccccccchhHHHHhhhcccEEEeccccCcccccccccccCCCCCc
Q 038338          322 LQRYRIRIGDKLEYEIDQLLVKSEALRLMMLKGLEKVSILQENDGTKMLLQRTEDLWLVKLEGVQNVVHELDDGEGFPRL  401 (421)
Q Consensus       322 L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L  401 (421)
                      |+.|+++.+.. ...+|..++.+++|+.|++++|.+  ....|.++..+ ++|++|++++|..++.+|..+.   .+++|
T Consensus       231 L~~L~Ls~n~~-~~~~p~~~~~l~~L~~L~L~~n~~--~~~~p~~~~~l-~~L~~L~L~~n~~~~~iP~~l~---~L~~L  303 (328)
T 4fcg_A          231 LEELDLRGCTA-LRNYPPIFGGRAPLKRLILKDCSN--LLTLPLDIHRL-TQLEKLDLRGCVNLSRLPSLIA---QLPAN  303 (328)
T ss_dssp             CCEEECTTCTT-CCBCCCCTTCCCCCCEEECTTCTT--CCBCCTTGGGC-TTCCEEECTTCTTCCCCCGGGG---GSCTT
T ss_pred             CCEEECcCCcc-hhhhHHHhcCCCCCCEEECCCCCc--hhhcchhhhcC-CCCCEEeCCCCCchhhccHHHh---hccCc
Confidence            88888864433 335677788888899999988873  44566667777 8899999999888888888777   88888


Q ss_pred             cEEEEeec
Q 038338          402 KHLHVESC  409 (421)
Q Consensus       402 ~~L~i~~c  409 (421)
                      +.+.+...
T Consensus       304 ~~l~l~~~  311 (328)
T 4fcg_A          304 CIILVPPH  311 (328)
T ss_dssp             CEEECCGG
T ss_pred             eEEeCCHH
Confidence            88887643

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.93  E-value=9.7e-25  Score=212.62  Aligned_cols=221  Identities=20%  Similarity=0.203  Sum_probs=143.0

Q ss_pred             cCCCeEEEcCCCCCccCCc--ccCCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCCChh-hhcccCCcE
Q 038338          124 RKDPIAISLPQRNIQELPE--RLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPSS-LGRLINLQT  200 (421)
Q Consensus       124 ~~~l~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~-i~~l~~L~~  200 (421)
                      ..+++.|++++|.+..++.  +.++++|+.|++++|.+  ..+....|.++++|++|++++|.++.+|.. +..+++|++
T Consensus        31 ~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i--~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  108 (477)
T 2id5_A           31 PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIV--SAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTK  108 (477)
T ss_dssp             CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCC--CEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCE
T ss_pred             CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCcc--CEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCE
Confidence            4677888888888765542  33778888888888875  344333357788888888888888777654 677888888


Q ss_pred             EEcccccCCC--cccccCcCCCCEEEeeCCCCccc-chhhcCCCCCCEEeccCCcCCcccchhhhcCCCCCcEEEcccCC
Q 038338          201 LCLDWCQLED--VAAIGQLKKLEILNLADSNIEQL-PLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNSF  277 (421)
Q Consensus       201 L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~  277 (421)
                      |++++|.+..  +..+.++++|++|++++|.+..+ |..+..+++|++|++++| .+..++...+..+++|+.|++++|.
T Consensus       109 L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~L~l~~n~  187 (477)
T 2id5_A          109 LDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKC-NLTSIPTEALSHLHGLIVLRLRHLN  187 (477)
T ss_dssp             EECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESC-CCSSCCHHHHTTCTTCCEEEEESCC
T ss_pred             EECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCC-cCcccChhHhcccCCCcEEeCCCCc
Confidence            8888888776  56777888888888888877755 345777888888888875 4455665557778888888888777


Q ss_pred             CCCccccCCCCcChhhhcCCCCCCEEEEEecCc-cccCCcc-cccCCceEEEEEcCCccchhhhhhchhhhceeEEEcCC
Q 038338          278 SGWEKVEGGSNASLVELKRLTKLTTLEIEVRDA-EILLPDF-VSVELQRYRIRIGDKLEYEIDQLLVKSEALRLMMLKGL  355 (421)
Q Consensus       278 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~-~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~  355 (421)
                      +.....        ..+..+++|+.|++++|.. +.++... ...+|+.|++..+. +....+..+..+++|+.|++++|
T Consensus       188 i~~~~~--------~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n  258 (477)
T 2id5_A          188 INAIRD--------YSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCN-LTAVPYLAVRHLVYLRFLNLSYN  258 (477)
T ss_dssp             CCEECT--------TCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSC-CCSCCHHHHTTCTTCCEEECCSS
T ss_pred             CcEeCh--------hhcccCcccceeeCCCCccccccCcccccCccccEEECcCCc-ccccCHHHhcCccccCeeECCCC
Confidence            665543        3455566666666665542 3333332 22455555554322 22112233445555555555554


Q ss_pred             c
Q 038338          356 E  356 (421)
Q Consensus       356 ~  356 (421)
                      .
T Consensus       259 ~  259 (477)
T 2id5_A          259 P  259 (477)
T ss_dssp             C
T ss_pred             c
Confidence            4

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.93  E-value=7.9e-25  Score=213.22  Aligned_cols=273  Identities=19%  Similarity=0.091  Sum_probs=221.4

Q ss_pred             ccCccCCCeEEEcCCCCCccC-Cc-ccCCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCC-Chhhhccc
Q 038338          120 EETIRKDPIAISLPQRNIQEL-PE-RLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSL-PSSLGRLI  196 (421)
Q Consensus       120 ~~~~~~~l~~l~l~~~~~~~l-~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~i~~l~  196 (421)
                      .+..+++++.|++++|.+..+ +. +.++++|+.|++++|.+  ..++...|.++++|++|++++|.+..+ |..+..++
T Consensus        51 ~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l--~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~  128 (477)
T 2id5_A           51 EFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRL--KLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLY  128 (477)
T ss_dssp             TTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC--CSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred             HccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcC--CccCcccccCCCCCCEEECCCCccccCChhHccccc
Confidence            467789999999999999665 33 33899999999999985  677777678999999999999999874 66789999


Q ss_pred             CCcEEEcccccCCC--cccccCcCCCCEEEeeCCCCcccchh-hcCCCCCCEEeccCCcCCcccchhhhcCCCCCcEEEc
Q 038338          197 NLQTLCLDWCQLED--VAAIGQLKKLEILNLADSNIEQLPLE-IGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYM  273 (421)
Q Consensus       197 ~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l  273 (421)
                      +|++|++++|.+..  +..+.++++|++|++++|++..+|.. +..+++|+.|++++|. +..++...+..+++|+.|++
T Consensus       129 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~l  207 (477)
T 2id5_A          129 NLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLN-INAIRDYSFKRLYRLKVLEI  207 (477)
T ss_dssp             TCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCC-CCEECTTCSCSCTTCCEEEE
T ss_pred             cCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCc-CcEeChhhcccCcccceeeC
Confidence            99999999999887  67899999999999999999988764 8899999999999964 45555555889999999999


Q ss_pred             ccCCCCCccccCCCCcChhhhcCCCCCCEEEEEecCccccCCcc--cccCCceEEEEEcCCccchhhhhhchhhhceeEE
Q 038338          274 DNSFSGWEKVEGGSNASLVELKRLTKLTTLEIEVRDAEILLPDF--VSVELQRYRIRIGDKLEYEIDQLLVKSEALRLMM  351 (421)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~  351 (421)
                      ++|......+        .......+|++|++++|.+..+|...  .+++|+.|+++.+ .+....+..+..+++|+.|+
T Consensus       208 ~~~~~~~~~~--------~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~  278 (477)
T 2id5_A          208 SHWPYLDTMT--------PNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYN-PISTIEGSMLHELLRLQEIQ  278 (477)
T ss_dssp             ECCTTCCEEC--------TTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSS-CCCEECTTSCTTCTTCCEEE
T ss_pred             CCCccccccC--------cccccCccccEEECcCCcccccCHHHhcCccccCeeECCCC-cCCccChhhccccccCCEEE
Confidence            9976554433        33344459999999999999888543  5599999999744 44444556688999999999


Q ss_pred             EcCCcccccccchhHHHHhhhcccEEEeccccCcccccccccccCCCCCccEEEEeecC
Q 038338          352 LKGLEKVSILQENDGTKMLLQRTEDLWLVKLEGVQNVVHELDDGEGFPRLKHLHVESCY  410 (421)
Q Consensus       352 l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~i~~c~  410 (421)
                      +++|.+..  ..+..+..+ ++|++|++++|......+..+.   .+++|+.|++.+|+
T Consensus       279 L~~n~l~~--~~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~---~l~~L~~L~l~~N~  331 (477)
T 2id5_A          279 LVGGQLAV--VEPYAFRGL-NYLRVLNVSGNQLTTLEESVFH---SVGNLETLILDSNP  331 (477)
T ss_dssp             CCSSCCSE--ECTTTBTTC-TTCCEEECCSSCCSCCCGGGBS---CGGGCCEEECCSSC
T ss_pred             CCCCccce--ECHHHhcCc-ccCCEEECCCCcCceeCHhHcC---CCcccCEEEccCCC
Confidence            99988533  335556666 9999999999976543344444   88999999999886

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.93  E-value=9.5e-26  Score=207.15  Aligned_cols=247  Identities=14%  Similarity=0.141  Sum_probs=130.5

Q ss_pred             CCCeEEEcCCCCCc---cCCccc-CCCCccEEEeee-cCCCCcccChHHhccCCCccEEEccCCCCC-CCChhhhcccCC
Q 038338          125 KDPIAISLPQRNIQ---ELPERL-QCPNLQLFLLFR-QGYGPVQISDLFFEGTEELKVLSLIGIHFS-SLPSSLGRLINL  198 (421)
Q Consensus       125 ~~l~~l~l~~~~~~---~l~~~~-~~~~L~~L~l~~-~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~lp~~i~~l~~L  198 (421)
                      .+++.|+++++.+.   .+|... ++++|++|++++ |.+ .+.+|..+ .++++|++|++++|.+. .+|..++.+++|
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l-~~~~p~~l-~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L  127 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNL-VGPIPPAI-AKLTQLHYLYITHTNVSGAIPDFLSQIKTL  127 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTE-ESCCCGGG-GGCTTCSEEEEEEECCEEECCGGGGGCTTC
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcc-cccCChhH-hcCCCCCEEECcCCeeCCcCCHHHhCCCCC
Confidence            34555555555552   344333 555555555553 443 33444442 45555555555555554 355555555555


Q ss_pred             cEEEcccccCCC--cccccCcCCCCEEEeeCCCCc-ccchhhcCCC-CCCEEeccCCcCCcccchhhhcCCCCCcEEEcc
Q 038338          199 QTLCLDWCQLED--VAAIGQLKKLEILNLADSNIE-QLPLEIGQLT-GLRLLDLTNCWSLQVIAPNVISKLSRLEELYMD  274 (421)
Q Consensus       199 ~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~l~-~lp~~~~~l~-~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~  274 (421)
                      ++|++++|.+..  |..++++++|++|++++|.+. .+|..++.++ +|++|++++|...+..|.. ++.++ |++|+++
T Consensus       128 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~-~~~l~-L~~L~Ls  205 (313)
T 1ogq_A          128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPT-FANLN-LAFVDLS  205 (313)
T ss_dssp             CEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGG-GGGCC-CSEEECC
T ss_pred             CEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChH-HhCCc-ccEEECc
Confidence            555555555543  455555555555555555555 5555555554 5555555554433344433 44444 5555555


Q ss_pred             cCCCCCccccCCCCcChhhhcCCCCCCEEEEEecCccccCCcccccCCceEEEEEcCCccchhhhhhchhhhceeEEEcC
Q 038338          275 NSFSGWEKVEGGSNASLVELKRLTKLTTLEIEVRDAEILLPDFVSVELQRYRIRIGDKLEYEIDQLLVKSEALRLMMLKG  354 (421)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~  354 (421)
                      +|.+....+        ..++.+++|+.|++++|.+...+                        +.+..+++|++|++++
T Consensus       206 ~N~l~~~~~--------~~~~~l~~L~~L~L~~N~l~~~~------------------------~~~~~l~~L~~L~Ls~  253 (313)
T 1ogq_A          206 RNMLEGDAS--------VLFGSDKNTQKIHLAKNSLAFDL------------------------GKVGLSKNLNGLDLRN  253 (313)
T ss_dssp             SSEEEECCG--------GGCCTTSCCSEEECCSSEECCBG------------------------GGCCCCTTCCEEECCS
T ss_pred             CCcccCcCC--------HHHhcCCCCCEEECCCCceeeec------------------------CcccccCCCCEEECcC
Confidence            554433322        34445555555555555443221                        2244556666666666


Q ss_pred             CcccccccchhHHHHhhhcccEEEeccccCcccccccccccCCCCCccEEEEeecCceee
Q 038338          355 LEKVSILQENDGTKMLLQRTEDLWLVKLEGVQNVVHELDDGEGFPRLKHLHVESCYEIVH  414 (421)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~i~~c~~L~~  414 (421)
                      |.+  ....|.++..+ ++|++|++++|...+.+|.. .   .+++|+.+++.+++.+..
T Consensus       254 N~l--~~~~p~~l~~l-~~L~~L~Ls~N~l~~~ip~~-~---~l~~L~~l~l~~N~~lc~  306 (313)
T 1ogq_A          254 NRI--YGTLPQGLTQL-KFLHSLNVSFNNLCGEIPQG-G---NLQRFDVSAYANNKCLCG  306 (313)
T ss_dssp             SCC--EECCCGGGGGC-TTCCEEECCSSEEEEECCCS-T---TGGGSCGGGTCSSSEEES
T ss_pred             Ccc--cCcCChHHhcC-cCCCEEECcCCcccccCCCC-c---cccccChHHhcCCCCccC
Confidence            663  22345555555 66667777666665555542 2   666677777766665554

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.93  E-value=2.4e-25  Score=228.90  Aligned_cols=279  Identities=19%  Similarity=0.188  Sum_probs=177.6

Q ss_pred             ccCccCCCeEEEcCCCCC-ccCCcccCCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCC-CChhhhcccC
Q 038338          120 EETIRKDPIAISLPQRNI-QELPERLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSS-LPSSLGRLIN  197 (421)
Q Consensus       120 ~~~~~~~l~~l~l~~~~~-~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-lp~~i~~l~~  197 (421)
                      .+..+++++.|++++|.+ +.+|.. .+++|+.|++++|.+ .+.+|..++..+++|++|++++|.+.. +|..++.+++
T Consensus       242 ~l~~l~~L~~L~Ls~n~l~~~~~~~-~l~~L~~L~L~~n~l-~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~  319 (768)
T 3rgz_A          242 AISTCTELKLLNISSNQFVGPIPPL-PLKSLQYLSLAENKF-TGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSL  319 (768)
T ss_dssp             HTTTCSSCCEEECCSSCCEESCCCC-CCTTCCEEECCSSEE-EESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTT
T ss_pred             HHhcCCCCCEEECCCCcccCccCcc-ccCCCCEEECcCCcc-CCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCC
Confidence            345556666666666665 233322 555555555555554 334444433333555555555555542 4555555555


Q ss_pred             CcEEEcccccCCC--ccc-ccCcCCCCEEEeeCCCCc-ccchhhcC---------------------------CCCCCEE
Q 038338          198 LQTLCLDWCQLED--VAA-IGQLKKLEILNLADSNIE-QLPLEIGQ---------------------------LTGLRLL  246 (421)
Q Consensus       198 L~~L~l~~~~~~~--~~~-~~~l~~L~~L~l~~~~l~-~lp~~~~~---------------------------l~~L~~L  246 (421)
                      |++|++++|.+.+  |.. +.++++|++|++++|.+. .+|..+..                           +++|++|
T Consensus       320 L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L  399 (768)
T 3rgz_A          320 LESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQEL  399 (768)
T ss_dssp             CCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEE
T ss_pred             ccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEE
Confidence            5555555555442  322 555555555555555444 44444443                           4455555


Q ss_pred             eccCCcCCcccchhhhcCCCCCcEEEcccCCCCCccccCCCCcChhhhcCCCCCCEEEEEecCcc-ccCCcc-cccCCce
Q 038338          247 DLTNCWSLQVIAPNVISKLSRLEELYMDNSFSGWEKVEGGSNASLVELKRLTKLTTLEIEVRDAE-ILLPDF-VSVELQR  324 (421)
Q Consensus       247 ~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~-~~~~L~~  324 (421)
                      ++++|...+.+|.. ++.+++|++|++++|.+....+        ..++.+++|+.|++++|.+. .+|..+ .+++|+.
T Consensus       400 ~L~~n~l~~~~p~~-l~~l~~L~~L~Ls~N~l~~~~p--------~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~  470 (768)
T 3rgz_A          400 YLQNNGFTGKIPPT-LSNCSELVSLHLSFNYLSGTIP--------SSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLET  470 (768)
T ss_dssp             ECCSSEEEEECCGG-GGGCTTCCEEECCSSEEESCCC--------GGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCE
T ss_pred             ECCCCccccccCHH-HhcCCCCCEEECcCCcccCccc--------HHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceE
Confidence            55555444445544 6677777777777766554433        66788888888888888875 666666 4588999


Q ss_pred             EEEEEcCCccchhhhhhchhhhceeEEEcCCcccccccchhHHHHhhhcccEEEeccccCcccccccccccCCCCCccEE
Q 038338          325 YRIRIGDKLEYEIDQLLVKSEALRLMMLKGLEKVSILQENDGTKMLLQRTEDLWLVKLEGVQNVVHELDDGEGFPRLKHL  404 (421)
Q Consensus       325 L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L  404 (421)
                      |++.. +......|..+..+++|+.|++++|.+  ....|.+++.+ ++|++|++++|...+.+|..+.   .+++|+.|
T Consensus       471 L~L~~-N~l~~~~p~~l~~l~~L~~L~L~~N~l--~~~~p~~~~~l-~~L~~L~L~~N~l~~~~p~~l~---~l~~L~~L  543 (768)
T 3rgz_A          471 LILDF-NDLTGEIPSGLSNCTNLNWISLSNNRL--TGEIPKWIGRL-ENLAILKLSNNSFSGNIPAELG---DCRSLIWL  543 (768)
T ss_dssp             EECCS-SCCCSCCCGGGGGCTTCCEEECCSSCC--CSCCCGGGGGC-TTCCEEECCSSCCEEECCGGGG---GCTTCCEE
T ss_pred             EEecC-CcccCcCCHHHhcCCCCCEEEccCCcc--CCcCChHHhcC-CCCCEEECCCCcccCcCCHHHc---CCCCCCEE
Confidence            99874 444446778888999999999999884  34567778887 8999999999988888888777   89999999


Q ss_pred             EEeecCceeeec
Q 038338          405 HVESCYEIVHIV  416 (421)
Q Consensus       405 ~i~~c~~L~~l~  416 (421)
                      ++++|+--..++
T Consensus       544 ~Ls~N~l~g~ip  555 (768)
T 3rgz_A          544 DLNTNLFNGTIP  555 (768)
T ss_dssp             ECCSSEEESBCC
T ss_pred             ECCCCccCCcCC
Confidence            999886433443

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.93  E-value=1e-25  Score=206.95  Aligned_cols=226  Identities=13%  Similarity=0.155  Sum_probs=175.9

Q ss_pred             cccCccCCCeEEEcCC-CCC-ccCCccc-CCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCC-CCChhhhc
Q 038338          119 MEETIRKDPIAISLPQ-RNI-QELPERL-QCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFS-SLPSSLGR  194 (421)
Q Consensus       119 ~~~~~~~~l~~l~l~~-~~~-~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~lp~~i~~  194 (421)
                      ..+..+++++.|++++ +.+ +.+|... ++++|+.|++++|.+ .+.+|..+ .++++|++|++++|.+. .+|..++.
T Consensus        70 ~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l-~~~~p~~~-~~l~~L~~L~Ls~N~l~~~~p~~~~~  147 (313)
T 1ogq_A           70 SSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNV-SGAIPDFL-SQIKTLVTLDFSYNALSGTLPPSISS  147 (313)
T ss_dssp             GGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECC-EEECCGGG-GGCTTCCEEECCSSEEESCCCGGGGG
T ss_pred             hhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCee-CCcCCHHH-hCCCCCCEEeCCCCccCCcCChHHhc
Confidence            4677889999999995 776 5777555 999999999999997 55777764 88999999999999998 58999999


Q ss_pred             ccCCcEEEcccccCCC--cccccCcC-CCCEEEeeCCCCc-ccchhhcCCCCCCEEeccCCcCCcccchhhhcCCCCCcE
Q 038338          195 LINLQTLCLDWCQLED--VAAIGQLK-KLEILNLADSNIE-QLPLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEE  270 (421)
Q Consensus       195 l~~L~~L~l~~~~~~~--~~~~~~l~-~L~~L~l~~~~l~-~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~  270 (421)
                      +++|++|++++|.+..  |..+++++ +|++|++++|.+. .+|..+..++ |++|++++|...+..+. .++.+++|++
T Consensus       148 l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~-~~~~l~~L~~  225 (313)
T 1ogq_A          148 LPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASV-LFGSDKNTQK  225 (313)
T ss_dssp             CTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGG-GCCTTSCCSE
T ss_pred             CCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCH-HHhcCCCCCE
Confidence            9999999999999984  89999998 9999999999998 7888899987 99999999765555554 4899999999


Q ss_pred             EEcccCCCCCccccCCCCcChhhhcCCCCCCEEEEEecCcc-ccCCcccccCCceEEEEEcCCccchhhhhhchhhhcee
Q 038338          271 LYMDNSFSGWEKVEGGSNASLVELKRLTKLTTLEIEVRDAE-ILLPDFVSVELQRYRIRIGDKLEYEIDQLLVKSEALRL  349 (421)
Q Consensus       271 L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~  349 (421)
                      |++++|.+....+         .+..+++|++|++++|.+. .+|..                        +..+++|+.
T Consensus       226 L~L~~N~l~~~~~---------~~~~l~~L~~L~Ls~N~l~~~~p~~------------------------l~~l~~L~~  272 (313)
T 1ogq_A          226 IHLAKNSLAFDLG---------KVGLSKNLNGLDLRNNRIYGTLPQG------------------------LTQLKFLHS  272 (313)
T ss_dssp             EECCSSEECCBGG---------GCCCCTTCCEEECCSSCCEECCCGG------------------------GGGCTTCCE
T ss_pred             EECCCCceeeecC---------cccccCCCCEEECcCCcccCcCChH------------------------HhcCcCCCE
Confidence            9999998765543         3677788999988888875 44433                        444555555


Q ss_pred             EEEcCCcccccccchhHHHHhhhcccEEEeccccCc
Q 038338          350 MMLKGLEKVSILQENDGTKMLLQRTEDLWLVKLEGV  385 (421)
Q Consensus       350 L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  385 (421)
                      |++++|.+..  .+|.. ..+ ++|+.|++.+|+.+
T Consensus       273 L~Ls~N~l~~--~ip~~-~~l-~~L~~l~l~~N~~l  304 (313)
T 1ogq_A          273 LNVSFNNLCG--EIPQG-GNL-QRFDVSAYANNKCL  304 (313)
T ss_dssp             EECCSSEEEE--ECCCS-TTG-GGSCGGGTCSSSEE
T ss_pred             EECcCCcccc--cCCCC-ccc-cccChHHhcCCCCc
Confidence            5555555322  22322 333 55666666655543

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.93  E-value=2.2e-25  Score=224.18  Aligned_cols=280  Identities=16%  Similarity=0.108  Sum_probs=190.3

Q ss_pred             ccCCCeEEEcCCCCC-ccCCccc-CCCCccEEEeeecC-CCCc-ccChHHhccC------CCccEEEccCCCCCCCCh--
Q 038338          123 IRKDPIAISLPQRNI-QELPERL-QCPNLQLFLLFRQG-YGPV-QISDLFFEGT------EELKVLSLIGIHFSSLPS--  190 (421)
Q Consensus       123 ~~~~l~~l~l~~~~~-~~l~~~~-~~~~L~~L~l~~~~-~~~~-~~~~~~~~~l------~~L~~L~l~~~~~~~lp~--  190 (421)
                      .++++++|++++|.+ +.+|... ++++|+.|++++|. + .+ .+|..+ ..+      ++|++|++++|.++.+|.  
T Consensus       247 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l-~~~~lp~~~-~~L~~~~~l~~L~~L~L~~n~l~~ip~~~  324 (636)
T 4eco_A          247 NLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGI-SGEQLKDDW-QALADAPVGEKIQIIYIGYNNLKTFPVET  324 (636)
T ss_dssp             GCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTS-CHHHHHHHH-HHHHHSGGGGTCCEEECCSSCCSSCCCHH
T ss_pred             ccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCC-ccccchHHH-HhhhccccCCCCCEEECCCCcCCccCchh
Confidence            678888888888876 6677554 78888888888887 5 44 566655 444      788888888888888887  


Q ss_pred             hhhcccCCcEEEcccccCC-C-cccccCcCCCCEEEeeCCCCcccchhhcCCCC-CCEEeccCCcCCcccchhhhcCCC-
Q 038338          191 SLGRLINLQTLCLDWCQLE-D-VAAIGQLKKLEILNLADSNIEQLPLEIGQLTG-LRLLDLTNCWSLQVIAPNVISKLS-  266 (421)
Q Consensus       191 ~i~~l~~L~~L~l~~~~~~-~-~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~-L~~L~l~~~~~~~~~~~~~l~~l~-  266 (421)
                      .++.+++|++|++++|.+. . | .++++++|++|++++|.+..+|..+..+++ |++|++++|.. ..+|.. +..++ 
T Consensus       325 ~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l-~~lp~~-~~~~~l  401 (636)
T 4eco_A          325 SLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKL-KYIPNI-FDAKSV  401 (636)
T ss_dssp             HHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCC-SSCCSC-CCTTCS
T ss_pred             hhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcC-cccchh-hhhccc
Confidence            7888888888888888877 3 5 777777888888888777777777777777 77777777543 366653 44433 


Q ss_pred             -CCcEEEcccCCCCCcccc-C---------------------CCCcCh-hhhcCCCCCCEEEEEecCccccCCcccc--c
Q 038338          267 -RLEELYMDNSFSGWEKVE-G---------------------GSNASL-VELKRLTKLTTLEIEVRDAEILLPDFVS--V  320 (421)
Q Consensus       267 -~L~~L~l~~~~~~~~~~~-~---------------------~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~--~  320 (421)
                       +|++|++++|.+....+. .                     ....+. ..+..+++|+.|++++|.+..+|.....  .
T Consensus       402 ~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~  481 (636)
T 4eco_A          402 SVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDEN  481 (636)
T ss_dssp             SCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETT
T ss_pred             CccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhcccc
Confidence             666666666655443221 0                     001111 2244577788888888877777765421  1


Q ss_pred             -------CCceEEEEEcCCccchhhhhhc--hhhhceeEEEcCCcccccccchhHHHHhhhcccEEEec------cccCc
Q 038338          321 -------ELQRYRIRIGDKLEYEIDQLLV--KSEALRLMMLKGLEKVSILQENDGTKMLLQRTEDLWLV------KLEGV  385 (421)
Q Consensus       321 -------~L~~L~l~~~~~~~~~~~~~~~--~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~------~~~~~  385 (421)
                             +|+.|+++.+ .+. .+|..+.  .+++|+.|++++|.+..   +|.++..+ ++|++|+++      +|...
T Consensus       482 ~~~~~l~~L~~L~Ls~N-~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~---ip~~~~~l-~~L~~L~Ls~N~~ls~N~l~  555 (636)
T 4eco_A          482 ENFKNTYLLTSIDLRFN-KLT-KLSDDFRATTLPYLVGIDLSYNSFSK---FPTQPLNS-STLKGFGIRNQRDAQGNRTL  555 (636)
T ss_dssp             EECTTGGGCCEEECCSS-CCC-BCCGGGSTTTCTTCCEEECCSSCCSS---CCCGGGGC-SSCCEEECCSCBCTTCCBCC
T ss_pred             ccccccCCccEEECcCC-cCC-ccChhhhhccCCCcCEEECCCCCCCC---cChhhhcC-CCCCEEECCCCcccccCccc
Confidence                   7888888633 333 4666665  78888888888877532   56666666 888888884      34445


Q ss_pred             ccccccccccCCCCCccEEEEeecCceeeecc
Q 038338          386 QNVVHELDDGEGFPRLKHLHVESCYEIVHIVG  417 (421)
Q Consensus       386 ~~~~~~~~~~~~~~~L~~L~i~~c~~L~~l~~  417 (421)
                      +.+|..+.   ++++|+.|++++|. +.+++.
T Consensus       556 ~~~p~~l~---~l~~L~~L~Ls~N~-l~~ip~  583 (636)
T 4eco_A          556 REWPEGIT---LCPSLTQLQIGSND-IRKVNE  583 (636)
T ss_dssp             CCCCTTGG---GCSSCCEEECCSSC-CCBCCS
T ss_pred             ccChHHHh---cCCCCCEEECCCCc-CCccCH
Confidence            66666665   77888888887774 455543

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.92  E-value=1.1e-24  Score=223.38  Aligned_cols=283  Identities=16%  Similarity=0.106  Sum_probs=162.7

Q ss_pred             ccCccCCCeEEEcCCCCCcc------------------CCccc---CCCCccEEEeeecCCCCcccChHHhccCCCccEE
Q 038338          120 EETIRKDPIAISLPQRNIQE------------------LPERL---QCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVL  178 (421)
Q Consensus       120 ~~~~~~~l~~l~l~~~~~~~------------------l~~~~---~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L  178 (421)
                      .+..+++++.|++++|.+..                  +|...   ++++|+.|++++|.+ .+.+|..+ .++++|++|
T Consensus       443 ~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l-~~~iP~~l-~~L~~L~~L  520 (876)
T 4ecn_A          443 AIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPN-MTQLPDFL-YDLPELQSL  520 (876)
T ss_dssp             GGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTT-CCSCCGGG-GGCSSCCEE
T ss_pred             HHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCC-CccChHHH-hCCCCCCEE
Confidence            35556667777777666644                  55443   466677777766665 55555443 566666666


Q ss_pred             EccCCC-CCC--CChhhhccc-------CCcEEEcccccCCC-cc--cccCcCCCCEEEeeCCCCcccchhhcCCCCCCE
Q 038338          179 SLIGIH-FSS--LPSSLGRLI-------NLQTLCLDWCQLED-VA--AIGQLKKLEILNLADSNIEQLPLEIGQLTGLRL  245 (421)
Q Consensus       179 ~l~~~~-~~~--lp~~i~~l~-------~L~~L~l~~~~~~~-~~--~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~  245 (421)
                      ++++|. ++.  +|..++.+.       +|++|++++|.+.. |.  .++++++|++|++++|.+..+| .++.+++|++
T Consensus       521 ~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~  599 (876)
T 4ecn_A          521 NIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTD  599 (876)
T ss_dssp             ECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSEESE
T ss_pred             ECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccch-hhcCCCcceE
Confidence            666665 543  555555544       56666666666555 54  5556666666666655555555 5555555555


Q ss_pred             EeccCCcCCcccchhhhcCCCC-CcEEEcccCCCCCccccCC--------------------------------------
Q 038338          246 LDLTNCWSLQVIAPNVISKLSR-LEELYMDNSFSGWEKVEGG--------------------------------------  286 (421)
Q Consensus       246 L~l~~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~~~~--------------------------------------  286 (421)
                      |++++|... .+|.. +..+++ |+.|++++|.+...+....                                      
T Consensus       600 L~Ls~N~l~-~lp~~-l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~  677 (876)
T 4ecn_A          600 LKLDYNQIE-EIPED-FCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINAST  677 (876)
T ss_dssp             EECCSSCCS-CCCTT-SCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEE
T ss_pred             EECcCCccc-cchHH-HhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCE
Confidence            555554322 44443 444544 5555555544432211100                                      


Q ss_pred             -------CCcChhhh-cCCCCCCEEEEEecCccccCCcccc---------cCCceEEEEEcCCccchhhhhhc--hhhhc
Q 038338          287 -------SNASLVEL-KRLTKLTTLEIEVRDAEILLPDFVS---------VELQRYRIRIGDKLEYEIDQLLV--KSEAL  347 (421)
Q Consensus       287 -------~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~~~~---------~~L~~L~l~~~~~~~~~~~~~~~--~l~~L  347 (421)
                             ...+...+ ..+++|+.|++++|.+..+|.....         ++|+.|+++.+ .+. .+|..+.  .+++|
T Consensus       678 L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N-~L~-~lp~~l~~~~l~~L  755 (876)
T 4ecn_A          678 VTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFN-KLT-SLSDDFRATTLPYL  755 (876)
T ss_dssp             EECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSS-CCC-CCCGGGSTTTCTTC
T ss_pred             EEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCC-CCc-cchHHhhhccCCCc
Confidence                   00112222 3566777777777776666655421         16777777633 333 4566665  77888


Q ss_pred             eeEEEcCCcccccccchhHHHHhhhcccEEEecc------ccCcccccccccccCCCCCccEEEEeecCceeeecc
Q 038338          348 RLMMLKGLEKVSILQENDGTKMLLQRTEDLWLVK------LEGVQNVVHELDDGEGFPRLKHLHVESCYEIVHIVG  417 (421)
Q Consensus       348 ~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~------~~~~~~~~~~~~~~~~~~~L~~L~i~~c~~L~~l~~  417 (421)
                      +.|++++|.+..   +|..+..+ ++|+.|++++      |...+.+|..+.   ++++|+.|++++|. +..++.
T Consensus       756 ~~L~Ls~N~L~~---lp~~l~~L-~~L~~L~Ls~N~~ls~N~l~~~ip~~l~---~L~~L~~L~Ls~N~-L~~Ip~  823 (876)
T 4ecn_A          756 SNMDVSYNCFSS---FPTQPLNS-SQLKAFGIRHQRDAEGNRILRQWPTGIT---TCPSLIQLQIGSND-IRKVDE  823 (876)
T ss_dssp             CEEECCSSCCSS---CCCGGGGC-TTCCEEECCCCBCTTCCBCCCCCCTTGG---GCSSCCEEECCSSC-CCBCCS
T ss_pred             CEEEeCCCCCCc---cchhhhcC-CCCCEEECCCCCCcccccccccChHHHh---cCCCCCEEECCCCC-CCccCH
Confidence            888888877533   45566666 7788887765      444455665555   67777777777774 455544

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.92  E-value=8.8e-25  Score=219.80  Aligned_cols=266  Identities=13%  Similarity=0.140  Sum_probs=211.2

Q ss_pred             EEEcCCCCCcc------------------CCccc---CCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCC-CC
Q 038338          129 AISLPQRNIQE------------------LPERL---QCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIH-FS  186 (421)
Q Consensus       129 ~l~l~~~~~~~------------------l~~~~---~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~  186 (421)
                      .|++++|.+..                  +|...   ++++|+.|++++|.+ .+.+|..+ .++++|++|++++|. ++
T Consensus       210 ~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l-~~~~p~~l-~~l~~L~~L~Ls~n~~l~  287 (636)
T 4eco_A          210 QFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPN-LTKLPTFL-KALPEMQLINVACNRGIS  287 (636)
T ss_dssp             EEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTT-CSSCCTTT-TTCSSCCEEECTTCTTSC
T ss_pred             EEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcC-CccChHHH-hcCCCCCEEECcCCCCCc
Confidence            46778888855                  77654   599999999999998 77888765 889999999999998 87


Q ss_pred             C--CChhhhcc------cCCcEEEcccccCCC-cc--cccCcCCCCEEEeeCCCCc-ccchhhcCCCCCCEEeccCCcCC
Q 038338          187 S--LPSSLGRL------INLQTLCLDWCQLED-VA--AIGQLKKLEILNLADSNIE-QLPLEIGQLTGLRLLDLTNCWSL  254 (421)
Q Consensus       187 ~--lp~~i~~l------~~L~~L~l~~~~~~~-~~--~~~~l~~L~~L~l~~~~l~-~lp~~~~~l~~L~~L~l~~~~~~  254 (421)
                      .  +|..++.+      ++|++|++++|.++. |.  .++++++|++|++++|.+. .+| .++.+++|++|++++|. +
T Consensus       288 ~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~-l  365 (636)
T 4eco_A          288 GEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQ-I  365 (636)
T ss_dssp             HHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSE-E
T ss_pred             cccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCc-c
Confidence            4  89988887      999999999999989 87  8999999999999999999 999 89999999999999975 4


Q ss_pred             cccchhhhcCCCC-CcEEEcccCCCCCccccCCCC-----------------cChhhhc-------CCCCCCEEEEEecC
Q 038338          255 QVIAPNVISKLSR-LEELYMDNSFSGWEKVEGGSN-----------------ASLVELK-------RLTKLTTLEIEVRD  309 (421)
Q Consensus       255 ~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~~~~~~-----------------~~~~~l~-------~l~~L~~L~l~~~~  309 (421)
                      ..+|.. ++.+++ |++|++++|.+...+...+..                 ..+..++       .+++|+.|++++|.
T Consensus       366 ~~lp~~-l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~  444 (636)
T 4eco_A          366 TEIPAN-FCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQ  444 (636)
T ss_dssp             EECCTT-SEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSC
T ss_pred             ccccHh-hhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCc
Confidence            488876 889999 999999999887544322110                 1113344       56688888898888


Q ss_pred             ccccCCcc--cccCCceEEEEEcCCccchhhhhhc--------hhhhceeEEEcCCcccccccchhHHH--HhhhcccEE
Q 038338          310 AEILLPDF--VSVELQRYRIRIGDKLEYEIDQLLV--------KSEALRLMMLKGLEKVSILQENDGTK--MLLQRTEDL  377 (421)
Q Consensus       310 ~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~--------~l~~L~~L~l~~~~~~~~~~~~~~~~--~~~~~L~~L  377 (421)
                      +..+|..+  .+++|+.|+++.+. .. .+|....        ++++|+.|++++|.+.   .+|..+.  .+ ++|++|
T Consensus       445 l~~lp~~~~~~l~~L~~L~Ls~N~-l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~---~lp~~~~~~~l-~~L~~L  518 (636)
T 4eco_A          445 ISKFPKELFSTGSPLSSINLMGNM-LT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT---KLSDDFRATTL-PYLVGI  518 (636)
T ss_dssp             CCSCCTHHHHTTCCCSEEECCSSC-CS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC---BCCGGGSTTTC-TTCCEE
T ss_pred             cCcCCHHHHccCCCCCEEECCCCC-CC-CcCHHHhccccccccccCCccEEECcCCcCC---ccChhhhhccC-CCcCEE
Confidence            88888765  35889999987443 33 3443322        2348999999998854   4666665  55 899999


Q ss_pred             EeccccCcccccccccccCCCCCccEEEEeec
Q 038338          378 WLVKLEGVQNVVHELDDGEGFPRLKHLHVESC  409 (421)
Q Consensus       378 ~l~~~~~~~~~~~~~~~~~~~~~L~~L~i~~c  409 (421)
                      ++++|.... +|..+.   ++++|+.|++++|
T Consensus       519 ~Ls~N~l~~-ip~~~~---~l~~L~~L~Ls~N  546 (636)
T 4eco_A          519 DLSYNSFSK-FPTQPL---NSSTLKGFGIRNQ  546 (636)
T ss_dssp             ECCSSCCSS-CCCGGG---GCSSCCEEECCSC
T ss_pred             ECCCCCCCC-cChhhh---cCCCCCEEECCCC
Confidence            999988765 777666   8999999999653

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.92  E-value=6.6e-24  Score=201.26  Aligned_cols=260  Identities=17%  Similarity=0.154  Sum_probs=150.7

Q ss_pred             CccCCCeEEEcCCCCCccCCc--ccCCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCCChh-hhcccCC
Q 038338          122 TIRKDPIAISLPQRNIQELPE--RLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPSS-LGRLINL  198 (421)
Q Consensus       122 ~~~~~l~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~-i~~l~~L  198 (421)
                      ..+++++.|+++++.+..++.  ...+++|+.|++++|.+  ..++...+.++++|++|++++|.++.+|.. ++.+++|
T Consensus        66 ~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l--~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L  143 (390)
T 3o6n_A           66 DSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAI--RYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKL  143 (390)
T ss_dssp             HHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC--CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             cccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCC--CcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCC
Confidence            334555555555555544332  22555555555555553  333333345555555555555555555544 2555555


Q ss_pred             cEEEcccccCCC--cccccCcCCCCEEEeeCCCCcccchhhcCCCCCCEEeccCCcC------------------Ccccc
Q 038338          199 QTLCLDWCQLED--VAAIGQLKKLEILNLADSNIEQLPLEIGQLTGLRLLDLTNCWS------------------LQVIA  258 (421)
Q Consensus       199 ~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~------------------~~~~~  258 (421)
                      ++|++++|.+..  +..++++++|++|++++|.++.++  +..+++|++|++++|..                  +..++
T Consensus       144 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~  221 (390)
T 3o6n_A          144 TTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVR  221 (390)
T ss_dssp             CEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC--GGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEE
T ss_pred             cEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc--cccccccceeecccccccccCCCCcceEEECCCCeeeecc
Confidence            555555555544  334555555555555555555442  23344444444433211                  11111


Q ss_pred             hhhhcCCCCCcEEEcccCCCCCccccCCCCcChhhhcCCCCCCEEEEEecCcccc-CCcc-cccCCceEEEEEcCCccch
Q 038338          259 PNVISKLSRLEELYMDNSFSGWEKVEGGSNASLVELKRLTKLTTLEIEVRDAEIL-LPDF-VSVELQRYRIRIGDKLEYE  336 (421)
Q Consensus       259 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~-~~~~L~~L~l~~~~~~~~~  336 (421)
                      .   ...++|++|++++|.+...          ..++.+++|++|++++|.+..+ |..+ .+++|+.|+++.+ ... .
T Consensus       222 ~---~~~~~L~~L~l~~n~l~~~----------~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~-~  286 (390)
T 3o6n_A          222 G---PVNVELTILKLQHNNLTDT----------AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN-RLV-A  286 (390)
T ss_dssp             C---CCCSSCCEEECCSSCCCCC----------GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSS-CCC-E
T ss_pred             c---cccccccEEECCCCCCccc----------HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCC-cCc-c
Confidence            1   1122344444444433321          4578888999999999988765 4444 4589999999744 333 3


Q ss_pred             hhhhhchhhhceeEEEcCCcccccccchhHHHHhhhcccEEEeccccCcccccccccccCCCCCccEEEEeecC
Q 038338          337 IDQLLVKSEALRLMMLKGLEKVSILQENDGTKMLLQRTEDLWLVKLEGVQNVVHELDDGEGFPRLKHLHVESCY  410 (421)
Q Consensus       337 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~i~~c~  410 (421)
                      ++..+..+++|+.|++++|.+.   ..+..+..+ ++|++|++++|... .++     ...+++|+.|++++|+
T Consensus       287 ~~~~~~~l~~L~~L~L~~n~l~---~~~~~~~~l-~~L~~L~L~~N~i~-~~~-----~~~~~~L~~L~l~~N~  350 (390)
T 3o6n_A          287 LNLYGQPIPTLKVLDLSHNHLL---HVERNQPQF-DRLENLYLDHNSIV-TLK-----LSTHHTLKNLTLSHND  350 (390)
T ss_dssp             EECSSSCCTTCCEEECCSSCCC---CCGGGHHHH-TTCSEEECCSSCCC-CCC-----CCTTCCCSEEECCSSC
T ss_pred             cCcccCCCCCCCEEECCCCcce---ecCcccccc-CcCCEEECCCCccc-eeC-----chhhccCCEEEcCCCC
Confidence            4555677899999999998743   456667776 99999999998864 333     3388999999999875

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.92  E-value=4.2e-24  Score=219.19  Aligned_cols=281  Identities=15%  Similarity=0.148  Sum_probs=191.9

Q ss_pred             ccCccCCCeEEEcCCCC-Cc--cCCcc--------cCCCCccEEEeeecCCCCcccCh-HHhccCCCccEEEccCCCCCC
Q 038338          120 EETIRKDPIAISLPQRN-IQ--ELPER--------LQCPNLQLFLLFRQGYGPVQISD-LFFEGTEELKVLSLIGIHFSS  187 (421)
Q Consensus       120 ~~~~~~~l~~l~l~~~~-~~--~l~~~--------~~~~~L~~L~l~~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~  187 (421)
                      .+..+++++.|++++|. +.  .+|..        ..+++|+.|++++|.+ . .+|. ..+.++++|++|++++|.+..
T Consensus       510 ~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L-~-~ip~~~~l~~L~~L~~L~Ls~N~l~~  587 (876)
T 4ecn_A          510 FLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNL-E-EFPASASLQKMVKLGLLDCVHNKVRH  587 (876)
T ss_dssp             GGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCC-C-BCCCHHHHTTCTTCCEEECTTSCCCB
T ss_pred             HHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcC-C-ccCChhhhhcCCCCCEEECCCCCccc
Confidence            45667777777777776 53  34432        2445777777777775 3 6665 234677777777777777776


Q ss_pred             CChhhhcccCCcEEEcccccCCC-cccccCcCC-CCEEEeeCCCCcccchhhcCCC------------------------
Q 038338          188 LPSSLGRLINLQTLCLDWCQLED-VAAIGQLKK-LEILNLADSNIEQLPLEIGQLT------------------------  241 (421)
Q Consensus       188 lp~~i~~l~~L~~L~l~~~~~~~-~~~~~~l~~-L~~L~l~~~~l~~lp~~~~~l~------------------------  241 (421)
                      +| .++.+++|++|++++|.+.. |..+.++++ |+.|++++|.+..+|..+..++                        
T Consensus       588 lp-~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~  666 (876)
T 4ecn_A          588 LE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCS  666 (876)
T ss_dssp             CC-CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSC
T ss_pred             ch-hhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhh
Confidence            77 67777777777777777666 666777777 7777777777666665544432                        


Q ss_pred             -------CCCEEeccCCcCCcccchhhhcCCCCCcEEEcccCCCCCccccCCCCcChhhhcCCCCCCEEEEEecCccccC
Q 038338          242 -------GLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNSFSGWEKVEGGSNASLVELKRLTKLTTLEIEVRDAEILL  314 (421)
Q Consensus       242 -------~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~  314 (421)
                             +|++|++++|. +..+|...+..+++|+.|++++|.+...+.... ......++++++|+.|++++|.+..+|
T Consensus       667 l~~~~~~~L~~L~Ls~N~-L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~-~~~~~~l~nl~~L~~L~Ls~N~L~~lp  744 (876)
T 4ecn_A          667 MDDYKGINASTVTLSYNE-IQKFPTELFATGSPISTIILSNNLMTSIPENSL-KPKDGNYKNTYLLTTIDLRFNKLTSLS  744 (876)
T ss_dssp             TTTCCCCCEEEEECCSSC-CCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSS-SCTTSCCTTGGGCCEEECCSSCCCCCC
T ss_pred             hccccCCCcCEEEccCCc-CCccCHHHHccCCCCCEEECCCCcCCccChHHh-ccccccccccCCccEEECCCCCCccch
Confidence                   45555555532 234555544567777777777777663332100 000011334559999999999999999


Q ss_pred             Cccc---ccCCceEEEEEcCCccchhhhhhchhhhceeEEEcCCc----ccccccchhHHHHhhhcccEEEeccccCccc
Q 038338          315 PDFV---SVELQRYRIRIGDKLEYEIDQLLVKSEALRLMMLKGLE----KVSILQENDGTKMLLQRTEDLWLVKLEGVQN  387 (421)
Q Consensus       315 ~~~~---~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~----~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  387 (421)
                      ..+.   +++|+.|+++.+ .+.. +|..+..+++|+.|++++|.    .......|.++..+ ++|++|++++|.. +.
T Consensus       745 ~~l~~~~l~~L~~L~Ls~N-~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L-~~L~~L~Ls~N~L-~~  820 (876)
T 4ecn_A          745 DDFRATTLPYLSNMDVSYN-CFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTC-PSLIQLQIGSNDI-RK  820 (876)
T ss_dssp             GGGSTTTCTTCCEEECCSS-CCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGC-SSCCEEECCSSCC-CB
T ss_pred             HHhhhccCCCcCEEEeCCC-CCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcC-CCCCEEECCCCCC-Cc
Confidence            8874   599999999844 4443 68889999999999998743    11344567788887 9999999999987 77


Q ss_pred             ccccccccCCCCCccEEEEeecCceeee
Q 038338          388 VVHELDDGEGFPRLKHLHVESCYEIVHI  415 (421)
Q Consensus       388 ~~~~~~~~~~~~~L~~L~i~~c~~L~~l  415 (421)
                      +|..+     +++|+.|++++|+ +.++
T Consensus       821 Ip~~l-----~~~L~~LdLs~N~-l~~i  842 (876)
T 4ecn_A          821 VDEKL-----TPQLYILDIADNP-NISI  842 (876)
T ss_dssp             CCSCC-----CSSSCEEECCSCT-TCEE
T ss_pred             cCHhh-----cCCCCEEECCCCC-CCcc
Confidence            87654     3799999999996 4443

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.92  E-value=3.5e-24  Score=200.32  Aligned_cols=268  Identities=17%  Similarity=0.155  Sum_probs=169.7

Q ss_pred             CeEEEcCCCCCccCCcccCCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCC-ChhhhcccCCcEEEccc
Q 038338          127 PIAISLPQRNIQELPERLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSL-PSSLGRLINLQTLCLDW  205 (421)
Q Consensus       127 l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~  205 (421)
                      ....+.+++.+..+|... .++++.|++++|.+  ..++...+.++++|++|++++|.++.+ |..++.+++|++|++++
T Consensus        33 ~~~c~~~~~~l~~iP~~~-~~~L~~L~l~~n~i--~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~  109 (353)
T 2z80_A           33 NGICKGSSGSLNSIPSGL-TEAVKSLDLSNNRI--TYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSY  109 (353)
T ss_dssp             TSEEECCSTTCSSCCTTC-CTTCCEEECTTSCC--CEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CeEeeCCCCCcccccccc-cccCcEEECCCCcC--cccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCC
Confidence            334566666666666533 24677777777764  445554456777777777777777664 44577777777777777


Q ss_pred             ccCCC-ccc-ccCcCCCCEEEeeCCCCcccch--hhcCCCCCCEEeccCCcCCcccchhhhcCCCCCcEEEcccCCCCCc
Q 038338          206 CQLED-VAA-IGQLKKLEILNLADSNIEQLPL--EIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNSFSGWE  281 (421)
Q Consensus       206 ~~~~~-~~~-~~~l~~L~~L~l~~~~l~~lp~--~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~  281 (421)
                      |.++. +.. ++++++|++|++++|++..+|.  .+..+++|++|++++|..++.++...++.+++|++|++++|.+...
T Consensus       110 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~  189 (353)
T 2z80_A          110 NYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSY  189 (353)
T ss_dssp             SCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEE
T ss_pred             CcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCcc
Confidence            77776 433 6777777777777777777765  4667777777777776555666554467777777777777766654


Q ss_pred             cccCCCCcChhhhcCCCCCCEEEEEecCccccCCcc--cccCCceEEEEEcCCccchhhh---hhchhhhceeEEEcCCc
Q 038338          282 KVEGGSNASLVELKRLTKLTTLEIEVRDAEILLPDF--VSVELQRYRIRIGDKLEYEIDQ---LLVKSEALRLMMLKGLE  356 (421)
Q Consensus       282 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~---~~~~l~~L~~L~l~~~~  356 (421)
                      .+        ..++.+++|++|++++|.+..+|...  .+++|+.|+++.+.... ..+.   ....++.++.++++++.
T Consensus       190 ~~--------~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~l~~~~~~~~l~~l~L~~~~  260 (353)
T 2z80_A          190 EP--------KSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDT-FHFSELSTGETNSLIKKFTFRNVK  260 (353)
T ss_dssp             CT--------TTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTT-CCCC------CCCCCCEEEEESCB
T ss_pred             CH--------HHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCcccc-ccccccccccccchhhcccccccc
Confidence            33        45667777777777777776666544  24777777776433222 1111   12234556667777765


Q ss_pred             cccc--ccchhHHHHhhhcccEEEeccccCcccccccccccCCCCCccEEEEeecC
Q 038338          357 KVSI--LQENDGTKMLLQRTEDLWLVKLEGVQNVVHELDDGEGFPRLKHLHVESCY  410 (421)
Q Consensus       357 ~~~~--~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~i~~c~  410 (421)
                      +...  ..+|.++..+ ++|++|++++|... .++...  ..++++|++|++++|+
T Consensus       261 l~~~~l~~l~~~l~~l-~~L~~L~Ls~N~l~-~i~~~~--~~~l~~L~~L~L~~N~  312 (353)
T 2z80_A          261 ITDESLFQVMKLLNQI-SGLLELEFSRNQLK-SVPDGI--FDRLTSLQKIWLHTNP  312 (353)
T ss_dssp             CCHHHHHHHHHHHHTC-TTCCEEECCSSCCC-CCCTTT--TTTCTTCCEEECCSSC
T ss_pred             ccCcchhhhHHHHhcc-cCCCEEECCCCCCC-ccCHHH--HhcCCCCCEEEeeCCC
Confidence            4221  1245556665 77888888777654 555442  1267888888887775

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.91  E-value=3.5e-23  Score=200.84  Aligned_cols=276  Identities=19%  Similarity=0.225  Sum_probs=145.5

Q ss_pred             cccccCccCCCeEEEcCCCCCccCCcccCCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCCChhhhccc
Q 038338          117 KKMEETIRKDPIAISLPQRNIQELPERLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPSSLGRLI  196 (421)
Q Consensus       117 ~~~~~~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~  196 (421)
                      .++.+..+++++.|++++|.+..++....+++|+.|++++|.+  ..++.  +.++++|++|++++|.+..++. +..++
T Consensus        60 ~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n~l--~~~~~--~~~l~~L~~L~L~~n~l~~~~~-~~~l~  134 (466)
T 1o6v_A           60 SIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQI--ADITP--LANLTNLTGLTLFNNQITDIDP-LKNLT  134 (466)
T ss_dssp             CCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCC--CCCGG--GTTCTTCCEEECCSSCCCCCGG-GTTCT
T ss_pred             cCcchhhhcCCCEEECCCCccCCchhhhccccCCEEECCCCcc--ccChh--hcCCCCCCEEECCCCCCCCChH-HcCCC
Confidence            3445566677777777777776666555777777777777765  33333  4667777777777777766655 66677


Q ss_pred             CCcEEEcccccCCCccc---------------------ccCcCCCCEEEeeCCCCcccchhhcCCCCCCEEeccCCcCCc
Q 038338          197 NLQTLCLDWCQLEDVAA---------------------IGQLKKLEILNLADSNIEQLPLEIGQLTGLRLLDLTNCWSLQ  255 (421)
Q Consensus       197 ~L~~L~l~~~~~~~~~~---------------------~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~  255 (421)
                      +|++|++++|.+.....                     ++++++|++|++++|.+..++ .+..+++|++|++++|.. .
T Consensus       135 ~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l-~  212 (466)
T 1o6v_A          135 NLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDIS-VLAKLTNLESLIATNNQI-S  212 (466)
T ss_dssp             TCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCC-C
T ss_pred             CCCEEECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCCh-hhccCCCCCEEEecCCcc-c
Confidence            77777777666555222                     344455555555555555443 245555555555555432 2


Q ss_pred             ccchhhhcCCCCCcEEEcccCCCCCccccC----------C--CCcChhhhcCCCCCCEEEEEecCccccCCcccccCCc
Q 038338          256 VIAPNVISKLSRLEELYMDNSFSGWEKVEG----------G--SNASLVELKRLTKLTTLEIEVRDAEILLPDFVSVELQ  323 (421)
Q Consensus       256 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~----------~--~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~  323 (421)
                      ..++  ++.+++|++|++++|.+.....-.          .  .-.....+..+++|+.|++++|.+..++....+++|+
T Consensus       213 ~~~~--~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~  290 (466)
T 1o6v_A          213 DITP--LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALT  290 (466)
T ss_dssp             CCGG--GGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGGGTTCTTCS
T ss_pred             cccc--ccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCccccchhhhcCCCCCEEECCCCccCccccccCCCccC
Confidence            2222  344555555555555443321100          0  0000011444445555555555544444422345555


Q ss_pred             eEEEEEcCCccchhhhhhchhhhceeEEEcCCcccccccchhHHHHhhhcccEEEeccccCcccccccccccCCCCCccE
Q 038338          324 RYRIRIGDKLEYEIDQLLVKSEALRLMMLKGLEKVSILQENDGTKMLLQRTEDLWLVKLEGVQNVVHELDDGEGFPRLKH  403 (421)
Q Consensus       324 ~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~  403 (421)
                      .|++..+. ... .+ .+..+++|+.|++++|.+....  +  +..+ ++|++|++++|.... ++ .+   .++++|+.
T Consensus       291 ~L~L~~n~-l~~-~~-~~~~l~~L~~L~L~~n~l~~~~--~--~~~l-~~L~~L~l~~n~l~~-~~-~l---~~l~~L~~  357 (466)
T 1o6v_A          291 NLELNENQ-LED-IS-PISNLKNLTYLTLYFNNISDIS--P--VSSL-TKLQRLFFYNNKVSD-VS-SL---ANLTNINW  357 (466)
T ss_dssp             EEECCSSC-CSC-CG-GGGGCTTCSEEECCSSCCSCCG--G--GGGC-TTCCEEECCSSCCCC-CG-GG---TTCTTCCE
T ss_pred             eEEcCCCc-ccC-ch-hhcCCCCCCEEECcCCcCCCch--h--hccC-ccCCEeECCCCccCC-ch-hh---ccCCCCCE
Confidence            55554322 221 11 1555666666666665532211  1  3343 666666666664432 22 22   36777777


Q ss_pred             EEEeecCceeee
Q 038338          404 LHVESCYEIVHI  415 (421)
Q Consensus       404 L~i~~c~~L~~l  415 (421)
                      |++++|+ +..+
T Consensus       358 L~l~~n~-l~~~  368 (466)
T 1o6v_A          358 LSAGHNQ-ISDL  368 (466)
T ss_dssp             EECCSSC-CCBC
T ss_pred             EeCCCCc-cCcc
Confidence            7777763 4433

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.91  E-value=1.3e-23  Score=210.84  Aligned_cols=129  Identities=29%  Similarity=0.325  Sum_probs=105.0

Q ss_pred             ccCCCeEEEcCCCCCccCCc--ccCCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCC-ChhhhcccCCc
Q 038338          123 IRKDPIAISLPQRNIQELPE--RLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSL-PSSLGRLINLQ  199 (421)
Q Consensus       123 ~~~~l~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~i~~l~~L~  199 (421)
                      ..+++++|+++++.+..++.  ..++++|++|++++|.+  ..++...|.++++|++|++++|.+..+ |..++.+++|+
T Consensus        30 ~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l--~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~  107 (606)
T 3vq2_A           30 IPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEI--ETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLE  107 (606)
T ss_dssp             SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCC--CEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCC
T ss_pred             CCCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcc--cccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCC
Confidence            34788999999988866654  33888999999998875  455444458889999999999988875 77788899999


Q ss_pred             EEEcccccCCC--cccccCcCCCCEEEeeCCCCc--ccchhhcCCCCCCEEeccCCcC
Q 038338          200 TLCLDWCQLED--VAAIGQLKKLEILNLADSNIE--QLPLEIGQLTGLRLLDLTNCWS  253 (421)
Q Consensus       200 ~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~l~--~lp~~~~~l~~L~~L~l~~~~~  253 (421)
                      +|++++|.+..  +..++++++|++|++++|.+.  .+|..++++++|++|++++|..
T Consensus       108 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l  165 (606)
T 3vq2_A          108 NLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYI  165 (606)
T ss_dssp             EEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCC
T ss_pred             EEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcc
Confidence            99999998877  477889999999999999887  5788888999999999988643

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.91  E-value=8.9e-24  Score=204.56  Aligned_cols=278  Identities=17%  Similarity=0.124  Sum_probs=195.0

Q ss_pred             eEEEcCCCCCccCCcccCCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCC-C-ChhhhcccCCcEEEccc
Q 038338          128 IAISLPQRNIQELPERLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSS-L-PSSLGRLINLQTLCLDW  205 (421)
Q Consensus       128 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l-p~~i~~l~~L~~L~l~~  205 (421)
                      +.++..++.+..+|.  -.+++++|++++|.+  ..++...+.++++|++|++++|.+.. + +..+..+++|++|++++
T Consensus        13 ~~~~c~~~~l~~lp~--l~~~l~~L~Ls~n~i--~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~   88 (455)
T 3v47_A           13 YNAICINRGLHQVPE--LPAHVNYVDLSLNSI--AELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY   88 (455)
T ss_dssp             TEEECCSSCCSSCCC--CCTTCCEEECCSSCC--CEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTT
T ss_pred             cccCcCCCCcccCCC--CCCccCEEEecCCcc--CcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCC
Confidence            356777777788887  337999999999986  44544445899999999999998863 4 56789999999999999


Q ss_pred             ccCCC--cccccCcCCCCEEEeeCCCCcc-cchh--hcCCCCCCEEeccCCcCCcccchhhhcCCCCCcEEEcccCCCCC
Q 038338          206 CQLED--VAAIGQLKKLEILNLADSNIEQ-LPLE--IGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNSFSGW  280 (421)
Q Consensus       206 ~~~~~--~~~~~~l~~L~~L~l~~~~l~~-lp~~--~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  280 (421)
                      |.+..  |..++++++|++|++++|++.. .|..  +..+++|++|++++|...+..|...++.+++|++|++++|.+..
T Consensus        89 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~  168 (455)
T 3v47_A           89 NQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKS  168 (455)
T ss_dssp             CTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSC
T ss_pred             CccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccc
Confidence            99887  7889999999999999999984 4544  88999999999999866555565557899999999999998765


Q ss_pred             ccccCCCC--------------cC------------hhhhcCCC------------------------------------
Q 038338          281 EKVEGGSN--------------AS------------LVELKRLT------------------------------------  298 (421)
Q Consensus       281 ~~~~~~~~--------------~~------------~~~l~~l~------------------------------------  298 (421)
                      ..+..-..              ..            ...+..++                                    
T Consensus       169 ~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~  248 (455)
T 3v47_A          169 ICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSN  248 (455)
T ss_dssp             CCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTT
T ss_pred             cChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeecc
Confidence            54321000              00            00011223                                    


Q ss_pred             ---------------------------CCCEEEEEecCcccc-CCcc-cccCCceEEEEEcCCccchhhhhhchhhhcee
Q 038338          299 ---------------------------KLTTLEIEVRDAEIL-LPDF-VSVELQRYRIRIGDKLEYEIDQLLVKSEALRL  349 (421)
Q Consensus       299 ---------------------------~L~~L~l~~~~~~~~-~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~  349 (421)
                                                 +|+.|++++|.+..+ |..+ .+++|+.|+++ .+......+..+..+++|+.
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls-~n~l~~~~~~~~~~l~~L~~  327 (455)
T 3v47_A          249 SYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLA-QNEINKIDDNAFWGLTHLLK  327 (455)
T ss_dssp             CTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECT-TSCCCEECTTTTTTCTTCCE
T ss_pred             ccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECC-CCcccccChhHhcCcccCCE
Confidence                                       444455544444332 2223 34677777775 33333344556777778888


Q ss_pred             EEEcCCcccccccchhHHHHhhhcccEEEeccccCcccccccccccCCCCCccEEEEeecCceeeecc
Q 038338          350 MMLKGLEKVSILQENDGTKMLLQRTEDLWLVKLEGVQNVVHELDDGEGFPRLKHLHVESCYEIVHIVG  417 (421)
Q Consensus       350 L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~i~~c~~L~~l~~  417 (421)
                      |++++|.+.  ...+..+..+ ++|++|++++|......+..+.   ++++|++|++++| +++++++
T Consensus       328 L~Ls~N~l~--~~~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~---~l~~L~~L~L~~N-~l~~~~~  388 (455)
T 3v47_A          328 LNLSQNFLG--SIDSRMFENL-DKLEVLDLSYNHIRALGDQSFL---GLPNLKELALDTN-QLKSVPD  388 (455)
T ss_dssp             EECCSSCCC--EECGGGGTTC-TTCCEEECCSSCCCEECTTTTT---TCTTCCEEECCSS-CCSCCCT
T ss_pred             EECCCCccC--CcChhHhcCc-ccCCEEECCCCcccccChhhcc---ccccccEEECCCC-ccccCCH
Confidence            888877642  2234455665 7888888888876555565555   7888888888886 4666543

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.91  E-value=4.8e-24  Score=213.97  Aligned_cols=271  Identities=17%  Similarity=0.118  Sum_probs=145.4

Q ss_pred             CccCCCeEEEcCCCCCccCCccc-CCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCC-CCCh-hhhcccCC
Q 038338          122 TIRKDPIAISLPQRNIQELPERL-QCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFS-SLPS-SLGRLINL  198 (421)
Q Consensus       122 ~~~~~l~~l~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~lp~-~i~~l~~L  198 (421)
                      ..+++++.|++++|.+..+|... .+++|+.|++++|.+  ..++...+..+++|++|++++|.+. .+|. .++.+++|
T Consensus       275 ~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l--~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L  352 (606)
T 3t6q_A          275 HCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKF--ENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENL  352 (606)
T ss_dssp             TTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCC--SBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTC
T ss_pred             ccccCCCEEeccCCccCCCChhhcccccCCEEECccCCc--CcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcC
Confidence            34455555555555555554333 555555555555553  2222222355555555555555544 2332 25555555


Q ss_pred             cEEEcccccCCC----cccccCcCCCCEEEeeCCCCccc-chhhcCCCCCCEEeccCCcCCcccchhhhcCCCCCcEEEc
Q 038338          199 QTLCLDWCQLED----VAAIGQLKKLEILNLADSNIEQL-PLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYM  273 (421)
Q Consensus       199 ~~L~l~~~~~~~----~~~~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l  273 (421)
                      ++|++++|.+..    +..++++++|++|++++|++..+ |..+..+++|++|++++|...+..+...++.+++|++|++
T Consensus       353 ~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l  432 (606)
T 3t6q_A          353 RELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNL  432 (606)
T ss_dssp             CEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEEC
T ss_pred             CEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEEC
Confidence            555555555544    23455555566666655555533 3345555566666665544333333333455556666666


Q ss_pred             ccCCCCCccccCCCCcChhhhcCCCCCCEEEEEecCccc--cC--Ccc-cccCCceEEEEEcCCccchhhhhhchhhhce
Q 038338          274 DNSFSGWEKVEGGSNASLVELKRLTKLTTLEIEVRDAEI--LL--PDF-VSVELQRYRIRIGDKLEYEIDQLLVKSEALR  348 (421)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~--~~--~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~  348 (421)
                      ++|.+....+        ..++.+++|++|++++|.+.+  ++  ..+ .+++|+.|+++.+ ......|..++.+++|+
T Consensus       433 ~~n~l~~~~~--------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~  503 (606)
T 3t6q_A          433 SHSLLDISSE--------QLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFC-DLSSIDQHAFTSLKMMN  503 (606)
T ss_dssp             TTCCCBTTCT--------TTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTS-CCCEECTTTTTTCTTCC
T ss_pred             CCCccCCcCH--------HHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCC-ccCccChhhhccccCCC
Confidence            6555543332        445666667777766666542  22  122 3466677666532 33334455566667777


Q ss_pred             eEEEcCCcccccccchhHHHHhhhcccEEEeccccCcccccccccccCCCCCccEEEEeecC
Q 038338          349 LMMLKGLEKVSILQENDGTKMLLQRTEDLWLVKLEGVQNVVHELDDGEGFPRLKHLHVESCY  410 (421)
Q Consensus       349 ~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~i~~c~  410 (421)
                      .|++++|.+.  ...+.++..+ +.| +|++++|......+..+.   .+++|+.|++++||
T Consensus       504 ~L~Ls~N~l~--~~~~~~l~~l-~~L-~L~L~~N~l~~~~~~~~~---~l~~L~~L~l~~N~  558 (606)
T 3t6q_A          504 HVDLSHNRLT--SSSIEALSHL-KGI-YLNLASNHISIILPSLLP---ILSQQRTINLRQNP  558 (606)
T ss_dssp             EEECCSSCCC--GGGGGGGTTC-CSC-EEECCSSCCCCCCGGGHH---HHHTSSEEECTTCC
T ss_pred             EEECCCCccC--cCChhHhCcc-ccc-EEECcCCcccccCHhhcc---cCCCCCEEeCCCCC
Confidence            7777776632  2334455555 666 677777666544444444   66777777777665

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.91  E-value=2.7e-23  Score=204.65  Aligned_cols=123  Identities=18%  Similarity=0.269  Sum_probs=91.9

Q ss_pred             CCCeEEEcCCCCCccCCc--ccCCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCCChhhhcccCCcEEE
Q 038338          125 KDPIAISLPQRNIQELPE--RLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPSSLGRLINLQTLC  202 (421)
Q Consensus       125 ~~l~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~  202 (421)
                      +++++|++++|.+..++.  ...+++|++|++++|.+  ..++...|.++++|++|++++|.++.+|..  .+.+|++|+
T Consensus        21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l--~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~   96 (520)
T 2z7x_B           21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRI--QYLDISVFKFNQELEYLDLSHNKLVKISCH--PTVNLKHLD   96 (520)
T ss_dssp             TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCC--CEEEGGGGTTCTTCCEEECCSSCCCEEECC--CCCCCSEEE
T ss_pred             ccccEEECCCCcccccChhhccccccccEEecCCCcc--CCcChHHhhcccCCCEEecCCCceeecCcc--ccCCccEEe
Confidence            788888888888866652  33788888888888875  344333457788888888888888777765  778888888


Q ss_pred             cccccCCC---cccccCcCCCCEEEeeCCCCcccchhhcCCCCC--CEEeccCCcC
Q 038338          203 LDWCQLED---VAAIGQLKKLEILNLADSNIEQLPLEIGQLTGL--RLLDLTNCWS  253 (421)
Q Consensus       203 l~~~~~~~---~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L--~~L~l~~~~~  253 (421)
                      +++|.+..   |..++++++|++|++++|.+..  ..+..+++|  ++|++++|..
T Consensus        97 L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~l  150 (520)
T 2z7x_B           97 LSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGET  150 (520)
T ss_dssp             CCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEECTT
T ss_pred             ccCCccccccchhhhccCCcceEEEecCcccch--hhccccccceeeEEEeecccc
Confidence            88888765   5778888888888888887765  346667777  8888887655

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.91  E-value=9.7e-24  Score=209.22  Aligned_cols=284  Identities=14%  Similarity=0.099  Sum_probs=150.0

Q ss_pred             CccCCCeEEEcCCCCCccCCc--ccCCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCC--CChhhhcccC
Q 038338          122 TIRKDPIAISLPQRNIQELPE--RLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSS--LPSSLGRLIN  197 (421)
Q Consensus       122 ~~~~~l~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--lp~~i~~l~~  197 (421)
                      ..++++++|++++|.+..++.  ...+++|++|++++|.+  ..++...++++++|++|++++|.++.  .|..++.+++
T Consensus        47 ~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l--~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~  124 (549)
T 2z81_A           47 RACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHL--SSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTN  124 (549)
T ss_dssp             SSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCC--CSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTT
T ss_pred             hcCCcccEEECCCCCcCccChhhccccccCCEEECCCCcc--CccCHHHhccCCCCcEEECCCCcccccchhhhhhccCC
Confidence            444455555555555433331  12445555555555543  33333333455555555555555442  2334455555


Q ss_pred             CcEEEccccc-CCC-c-ccccCcCCCCEEEeeCCCCc-ccchhhcCCCCCCEEeccCCcCCcccchhhhcCCCCCcEEEc
Q 038338          198 LQTLCLDWCQ-LED-V-AAIGQLKKLEILNLADSNIE-QLPLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYM  273 (421)
Q Consensus       198 L~~L~l~~~~-~~~-~-~~~~~l~~L~~L~l~~~~l~-~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l  273 (421)
                      |++|++++|. +.. + ..++++++|++|++++|++. ..|..++.+++|++|+++.|. ...++...++.+++|++|++
T Consensus       125 L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~-~~~~~~~~~~~l~~L~~L~L  203 (549)
T 2z81_A          125 LQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSE-SAFLLEIFADILSSVRYLEL  203 (549)
T ss_dssp             CCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSB-STTHHHHHHHSTTTBSEEEE
T ss_pred             ccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCc-ccccchhhHhhcccccEEEc
Confidence            5555555554 222 2 34555555555555555544 234445555555555555532 23344433456788888888


Q ss_pred             ccCCCCCccc---cCCC------------C--------cChhh-------------------------------------
Q 038338          274 DNSFSGWEKV---EGGS------------N--------ASLVE-------------------------------------  293 (421)
Q Consensus       274 ~~~~~~~~~~---~~~~------------~--------~~~~~-------------------------------------  293 (421)
                      ++|.+.....   ....            .        .+...                                     
T Consensus       204 ~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L  283 (549)
T 2z81_A          204 RDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKV  283 (549)
T ss_dssp             ESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTC
T ss_pred             cCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhccc
Confidence            8876655310   0000            0        00000                                     


Q ss_pred             ----------------------hcCCCCCCEEEEEecCccccCCcc--cccCCceEEEEEcCCccchhh---hhhchhhh
Q 038338          294 ----------------------LKRLTKLTTLEIEVRDAEILLPDF--VSVELQRYRIRIGDKLEYEID---QLLVKSEA  346 (421)
Q Consensus       294 ----------------------l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~---~~~~~l~~  346 (421)
                                            ....++|+.|++++|.+..+|..+  .+++|+.|+++.+. .....|   ..++.+++
T Consensus       284 ~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~~~l~~  362 (549)
T 2z81_A          284 ETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENL-MVEEYLKNSACKGAWPS  362 (549)
T ss_dssp             CEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSC-CCHHHHHHHTCTTSSTT
T ss_pred             ccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEccCCc-cccccccchhhhhcccc
Confidence                                  011245666666666666666665  35788888886433 333333   23667788


Q ss_pred             ceeEEEcCCcccccccchhHHHHhhhcccEEEeccccCcccccccccccCCCCCccEEEEeecCceeee
Q 038338          347 LRLMMLKGLEKVSILQENDGTKMLLQRTEDLWLVKLEGVQNVVHELDDGEGFPRLKHLHVESCYEIVHI  415 (421)
Q Consensus       347 L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~i~~c~~L~~l  415 (421)
                      |+.|++++|.+.........+..+ ++|++|++++|.. +.+|..+.   .+++|++|++++|. +..+
T Consensus       363 L~~L~Ls~N~l~~~~~~~~~~~~l-~~L~~L~Ls~N~l-~~lp~~~~---~~~~L~~L~Ls~N~-l~~l  425 (549)
T 2z81_A          363 LQTLVLSQNHLRSMQKTGEILLTL-KNLTSLDISRNTF-HPMPDSCQ---WPEKMRFLNLSSTG-IRVV  425 (549)
T ss_dssp             CCEEECTTSCCCCHHHHHHHGGGC-TTCCEEECTTCCC-CCCCSCCC---CCTTCCEEECTTSC-CSCC
T ss_pred             CcEEEccCCcccccccchhhhhcC-CCCCEEECCCCCC-ccCChhhc---ccccccEEECCCCC-cccc
Confidence            888888887753321122335555 8889999988865 45665554   67788888887774 4443

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.91  E-value=1.7e-23  Score=209.19  Aligned_cols=266  Identities=16%  Similarity=0.143  Sum_probs=151.8

Q ss_pred             ccCCCeEEEcCCCCCccCCc--ccCCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCCChh-hhcccCCc
Q 038338          123 IRKDPIAISLPQRNIQELPE--RLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPSS-LGRLINLQ  199 (421)
Q Consensus       123 ~~~~l~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~-i~~l~~L~  199 (421)
                      .+++++.|++++|.+..++.  ...+++|+.|++++|.+  ..++...|+++++|++|++++|.++.+|.. ++.+++|+
T Consensus        73 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l--~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~  150 (597)
T 3oja_B           73 SFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAI--RYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLT  150 (597)
T ss_dssp             HCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC--CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             cCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcC--CCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCC
Confidence            34555555555555543332  22555555555555553  333333345555555555555555555443 35555555


Q ss_pred             EEEcccccCCC--cccccCcCCCCEEEeeCCCCcccchhhcCCCCCCEEeccCCcCCcccchhhhcCCCCCcEEEcccCC
Q 038338          200 TLCLDWCQLED--VAAIGQLKKLEILNLADSNIEQLPLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNSF  277 (421)
Q Consensus       200 ~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~  277 (421)
                      +|++++|.+..  |..++++++|++|++++|.+..++  ++.+++|++|++++|.. ..     +...++|+.|++++|.
T Consensus       151 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~l~~L~~L~l~~n~l-~~-----l~~~~~L~~L~ls~n~  222 (597)
T 3oja_B          151 TLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLL-ST-----LAIPIAVEELDASHNS  222 (597)
T ss_dssp             EEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC--GGGCTTCSEEECCSSCC-SE-----EECCTTCSEEECCSSC
T ss_pred             EEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC--hhhhhhhhhhhcccCcc-cc-----ccCCchhheeeccCCc
Confidence            55555555544  334555555555555555555443  23344444444443211 11     1122233333333333


Q ss_pred             CCCccccCC-----------CCcChhhhcCCCCCCEEEEEecCcccc-CCcc-cccCCceEEEEEcCCccchhhhhhchh
Q 038338          278 SGWEKVEGG-----------SNASLVELKRLTKLTTLEIEVRDAEIL-LPDF-VSVELQRYRIRIGDKLEYEIDQLLVKS  344 (421)
Q Consensus       278 ~~~~~~~~~-----------~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l  344 (421)
                      +...+....           .-.....++.+++|+.|++++|.+..+ |..+ .+++|+.|+++.+ .+. .+|..+..+
T Consensus       223 l~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~-~l~~~~~~l  300 (597)
T 3oja_B          223 INVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN-RLV-ALNLYGQPI  300 (597)
T ss_dssp             CCEEECSCCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTS-CCC-EEECSSSCC
T ss_pred             ccccccccCCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCC-CCC-CCCcccccC
Confidence            222211100           001125578889999999999998755 4444 5589999999743 333 346667778


Q ss_pred             hhceeEEEcCCcccccccchhHHHHhhhcccEEEeccccCcccccccccccCCCCCccEEEEeecC
Q 038338          345 EALRLMMLKGLEKVSILQENDGTKMLLQRTEDLWLVKLEGVQNVVHELDDGEGFPRLKHLHVESCY  410 (421)
Q Consensus       345 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~i~~c~  410 (421)
                      ++|+.|++++|.+.   .+|.++..+ ++|++|++++|.... ++     ...+++|+.|++++|+
T Consensus       301 ~~L~~L~Ls~N~l~---~i~~~~~~l-~~L~~L~L~~N~l~~-~~-----~~~~~~L~~L~l~~N~  356 (597)
T 3oja_B          301 PTLKVLDLSHNHLL---HVERNQPQF-DRLENLYLDHNSIVT-LK-----LSTHHTLKNLTLSHND  356 (597)
T ss_dssp             TTCCEEECCSSCCC---CCGGGHHHH-TTCSEEECCSSCCCC-CC-----CCTTCCCSEEECCSSC
T ss_pred             CCCcEEECCCCCCC---ccCcccccC-CCCCEEECCCCCCCC-cC-----hhhcCCCCEEEeeCCC
Confidence            99999999998753   466777777 999999999988643 32     3388999999999876

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.91  E-value=2.6e-23  Score=208.65  Aligned_cols=213  Identities=15%  Similarity=0.149  Sum_probs=112.6

Q ss_pred             CcEEEcccccCCC--cccccCcCCCCEEEeeCCCCcccchhhcCCCCCCEEeccCCcCCcccchhhhcCCCCCcEEEccc
Q 038338          198 LQTLCLDWCQLED--VAAIGQLKKLEILNLADSNIEQLPLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDN  275 (421)
Q Consensus       198 L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~  275 (421)
                      |++|++++|.+..  +..++++++|++|++++|.++.+|.++..+++|++|++++|.. ..+++..++.+++|++|++++
T Consensus       256 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~l~~  334 (606)
T 3t6q_A          256 VESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKF-ENLCQISASNFPSLTHLSIKG  334 (606)
T ss_dssp             EEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCC-SBGGGGCGGGCTTCSEEECCS
T ss_pred             eeEEEeecCccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCc-CcCchhhhhccCcCCEEECCC
Confidence            3334444444333  2335555666666666666666666666666666666666433 233222245555555555555


Q ss_pred             CCCCCccccC-------------CC------CcChhhhcCCCCCCEEEEEecCccccC-Ccc-cccCCceEEEEEcCCcc
Q 038338          276 SFSGWEKVEG-------------GS------NASLVELKRLTKLTTLEIEVRDAEILL-PDF-VSVELQRYRIRIGDKLE  334 (421)
Q Consensus       276 ~~~~~~~~~~-------------~~------~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~-~~~~L~~L~l~~~~~~~  334 (421)
                      |.+....+..             ..      ......++.+++|++|++++|.+..++ ..+ .+++|+.|++..+....
T Consensus       335 n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  414 (606)
T 3t6q_A          335 NTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKV  414 (606)
T ss_dssp             CSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEEC
T ss_pred             CCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCC
Confidence            5443221110             00      000234566666777777666664443 223 34667777765332222


Q ss_pred             chhhhhhchhhhceeEEEcCCcccccccchhHHHHhhhcccEEEeccccCcccc-cccccccCCCCCccEEEEeecCcee
Q 038338          335 YEIDQLLVKSEALRLMMLKGLEKVSILQENDGTKMLLQRTEDLWLVKLEGVQNV-VHELDDGEGFPRLKHLHVESCYEIV  413 (421)
Q Consensus       335 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~~~~L~~L~i~~c~~L~  413 (421)
                      ...+..+..+++|+.|++++|.+.  ...+..+..+ ++|++|++++|...+.. +.... ...+++|+.|++++| ++.
T Consensus       415 ~~~~~~~~~l~~L~~L~l~~n~l~--~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~-~~~l~~L~~L~Ls~n-~l~  489 (606)
T 3t6q_A          415 KDAQSPFQNLHLLKVLNLSHSLLD--ISSEQLFDGL-PALQHLNLQGNHFPKGNIQKTNS-LQTLGRLEILVLSFC-DLS  489 (606)
T ss_dssp             CTTCCTTTTCTTCCEEECTTCCCB--TTCTTTTTTC-TTCCEEECTTCBCGGGEECSSCG-GGGCTTCCEEECTTS-CCC
T ss_pred             cccchhhhCcccCCEEECCCCccC--CcCHHHHhCC-CCCCEEECCCCCCCccccccchh-hccCCCccEEECCCC-ccC
Confidence            112233667777777777776632  2234455555 78888888887765422 21111 337888888888887 455


Q ss_pred             eec
Q 038338          414 HIV  416 (421)
Q Consensus       414 ~l~  416 (421)
                      .+.
T Consensus       490 ~~~  492 (606)
T 3t6q_A          490 SID  492 (606)
T ss_dssp             EEC
T ss_pred             ccC
Confidence            553

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.91  E-value=1.6e-22  Score=196.28  Aligned_cols=263  Identities=20%  Similarity=0.195  Sum_probs=164.4

Q ss_pred             cCccCCCeEEEcCCCCCccCCcccCCCCccEEEeeecCCCCcccCh-------------------HHhccCCCccEEEcc
Q 038338          121 ETIRKDPIAISLPQRNIQELPERLQCPNLQLFLLFRQGYGPVQISD-------------------LFFEGTEELKVLSLI  181 (421)
Q Consensus       121 ~~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~-------------------~~~~~l~~L~~L~l~  181 (421)
                      +..++++++|++++|.+..++....+++|+.|++++|.+  ..++.                   ..+.++++|++|+++
T Consensus       108 ~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~  185 (466)
T 1o6v_A          108 LANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDIS  185 (466)
T ss_dssp             GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEEEEEEEE--CCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECC
T ss_pred             hcCCCCCCEEECCCCCCCCChHHcCCCCCCEEECCCCcc--CCChhhccCCcccEeecCCcccCchhhccCCCCCEEECc
Confidence            444455555555555554444444555555555555543  11111                   002344455555555


Q ss_pred             CCCCCCCChhhhcccCCcEEEcccccCCCcccccCcCCCCEEEeeCCCCcccchhhcCCCCCCEEeccCCcCCcccchhh
Q 038338          182 GIHFSSLPSSLGRLINLQTLCLDWCQLEDVAAIGQLKKLEILNLADSNIEQLPLEIGQLTGLRLLDLTNCWSLQVIAPNV  261 (421)
Q Consensus       182 ~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~  261 (421)
                      +|.+..++. +..+++|++|++++|.+.....++.+++|++|++++|.+..++ .+..+++|++|++++|.. ...+.  
T Consensus       186 ~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l-~~~~~--  260 (466)
T 1o6v_A          186 SNKVSDISV-LAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQI-SNLAP--  260 (466)
T ss_dssp             SSCCCCCGG-GGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCC-CCCGG--
T ss_pred             CCcCCCChh-hccCCCCCEEEecCCcccccccccccCCCCEEECCCCCcccch-hhhcCCCCCEEECCCCcc-ccchh--
Confidence            555544432 4555555555555555555222555556666666666555543 355666666666666432 33333  


Q ss_pred             hcCCCCCcEEEcccCCCCCccccCCCCcChhhhcCCCCCCEEEEEecCccccCCcccccCCceEEEEEcCCccchhhhhh
Q 038338          262 ISKLSRLEELYMDNSFSGWEKVEGGSNASLVELKRLTKLTTLEIEVRDAEILLPDFVSVELQRYRIRIGDKLEYEIDQLL  341 (421)
Q Consensus       262 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~  341 (421)
                      +..+++|++|++++|.+...          ..+..+++|+.|++++|.+..++....+++|+.|+++.+.. ....+  +
T Consensus       261 ~~~l~~L~~L~l~~n~l~~~----------~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L~~n~l-~~~~~--~  327 (466)
T 1o6v_A          261 LSGLTKLTELKLGANQISNI----------SPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNI-SDISP--V  327 (466)
T ss_dssp             GTTCTTCSEEECCSSCCCCC----------GGGTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCC-SCCGG--G
T ss_pred             hhcCCCCCEEECCCCccCcc----------ccccCCCccCeEEcCCCcccCchhhcCCCCCCEEECcCCcC-CCchh--h
Confidence            55666666676666655543          22788999999999999998887755679999999985543 32222  7


Q ss_pred             chhhhceeEEEcCCcccccccchhHHHHhhhcccEEEeccccCcccccccccccCCCCCccEEEEeecCceee
Q 038338          342 VKSEALRLMMLKGLEKVSILQENDGTKMLLQRTEDLWLVKLEGVQNVVHELDDGEGFPRLKHLHVESCYEIVH  414 (421)
Q Consensus       342 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~i~~c~~L~~  414 (421)
                      ..+++|+.|++++|.+...    ..+..+ ++|++|++++|......|  +.   .+++|+.|++.+|+ +..
T Consensus       328 ~~l~~L~~L~l~~n~l~~~----~~l~~l-~~L~~L~l~~n~l~~~~~--~~---~l~~L~~L~l~~n~-~~~  389 (466)
T 1o6v_A          328 SSLTKLQRLFFYNNKVSDV----SSLANL-TNINWLSAGHNQISDLTP--LA---NLTRITQLGLNDQA-WTN  389 (466)
T ss_dssp             GGCTTCCEEECCSSCCCCC----GGGTTC-TTCCEEECCSSCCCBCGG--GT---TCTTCCEEECCCEE-EEC
T ss_pred             ccCccCCEeECCCCccCCc----hhhccC-CCCCEEeCCCCccCccch--hh---cCCCCCEEeccCCc-ccC
Confidence            8999999999999885432    356666 999999999998765554  44   89999999999984 444

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.91  E-value=1.3e-23  Score=199.30  Aligned_cols=278  Identities=17%  Similarity=0.144  Sum_probs=196.7

Q ss_pred             CccCCCeEEEcCCCCCccCCccc--CCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCCC-hhhhcccCC
Q 038338          122 TIRKDPIAISLPQRNIQELPERL--QCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLP-SSLGRLINL  198 (421)
Q Consensus       122 ~~~~~l~~l~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp-~~i~~l~~L  198 (421)
                      -.+.+++.+++.++.+..+|...  .+++|++|++++|.+  ..++...|..+++|++|++++|.+..++ ..++.+++|
T Consensus        42 ~~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i--~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  119 (390)
T 3o6n_A           42 ITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQI--EEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLL  119 (390)
T ss_dssp             GGGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCC--CEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             cccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcc--cccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCC
Confidence            34689999999999998888643  889999999999985  5566555688999999999999998864 458899999


Q ss_pred             cEEEcccccCCC-ccc-ccCcCCCCEEEeeCCCCcccch-hhcCCCCCCEEeccCCcCCcccchhhhcCCCCCcEEEccc
Q 038338          199 QTLCLDWCQLED-VAA-IGQLKKLEILNLADSNIEQLPL-EIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDN  275 (421)
Q Consensus       199 ~~L~l~~~~~~~-~~~-~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~  275 (421)
                      ++|++++|.+.. |.. ++++++|++|++++|.+..++. .+..+++|++|++++|. +..++   ++.+++|+.|++++
T Consensus       120 ~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~---~~~l~~L~~L~l~~  195 (390)
T 3o6n_A          120 TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR-LTHVD---LSLIPSLFHANVSY  195 (390)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSC-CSBCC---GGGCTTCSEEECCS
T ss_pred             CEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCc-CCccc---cccccccceeeccc
Confidence            999999999988 655 5899999999999999987754 58899999999999964 34443   45677777777777


Q ss_pred             CCCCCccccCC-------CCcCh-hhhcCCCCCCEEEEEecCccccCCcccccCCceEEEEEcCCccchhhhhhchhhhc
Q 038338          276 SFSGWEKVEGG-------SNASL-VELKRLTKLTTLEIEVRDAEILLPDFVSVELQRYRIRIGDKLEYEIDQLLVKSEAL  347 (421)
Q Consensus       276 ~~~~~~~~~~~-------~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L  347 (421)
                      |.+........       ...+. ......++|+.|++++|.+...+....+++|+.|+++. +......|..+..+++|
T Consensus       196 n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L  274 (390)
T 3o6n_A          196 NLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSY-NELEKIMYHPFVKMQRL  274 (390)
T ss_dssp             SCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCCGGGGGCTTCSEEECCS-SCCCEEESGGGTTCSSC
T ss_pred             ccccccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCcccHHHcCCCCccEEECCC-CcCCCcChhHccccccC
Confidence            76554321100       00000 00112356777777777776654333557788888863 33444456667778888


Q ss_pred             eeEEEcCCcccccccchhHHHHhhhcccEEEeccccCcccccccccccCCCCCccEEEEeecCceeee
Q 038338          348 RLMMLKGLEKVSILQENDGTKMLLQRTEDLWLVKLEGVQNVVHELDDGEGFPRLKHLHVESCYEIVHI  415 (421)
Q Consensus       348 ~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~i~~c~~L~~l  415 (421)
                      +.|++++|.+..   .+..+..+ ++|++|++++|.. ..++..+.   .+++|+.|++++|+ +..+
T Consensus       275 ~~L~L~~n~l~~---~~~~~~~l-~~L~~L~L~~n~l-~~~~~~~~---~l~~L~~L~L~~N~-i~~~  333 (390)
T 3o6n_A          275 ERLYISNNRLVA---LNLYGQPI-PTLKVLDLSHNHL-LHVERNQP---QFDRLENLYLDHNS-IVTL  333 (390)
T ss_dssp             CEEECCSSCCCE---EECSSSCC-TTCCEEECCSSCC-CCCGGGHH---HHTTCSEEECCSSC-CCCC
T ss_pred             CEEECCCCcCcc---cCcccCCC-CCCCEEECCCCcc-eecCcccc---ccCcCCEEECCCCc-ccee
Confidence            888888876432   23333344 7888888888754 45555454   67888888888774 4443

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.91  E-value=1.4e-23  Score=193.82  Aligned_cols=217  Identities=21%  Similarity=0.288  Sum_probs=136.6

Q ss_pred             cCCCeEEEcCCCCCccCCccc-CCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCCChhhhcccCCcEEE
Q 038338          124 RKDPIAISLPQRNIQELPERL-QCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPSSLGRLINLQTLC  202 (421)
Q Consensus       124 ~~~l~~l~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~  202 (421)
                      ..+++.|+++++.+..+|... ++++|+.|++++|.+ . .+|..+ .++++|++|++++|.+..+|..++.+++|++|+
T Consensus        80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l-~-~lp~~~-~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~  156 (328)
T 4fcg_A           80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGL-M-ELPDTM-QQFAGLETLTLARNPLRALPASIASLNRLRELS  156 (328)
T ss_dssp             STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCC-C-CCCSCG-GGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEE
T ss_pred             ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCc-c-chhHHH-hccCCCCEEECCCCccccCcHHHhcCcCCCEEE
Confidence            356777888877777776544 677788888877775 3 666554 667778888888777777777777777788888


Q ss_pred             cccccCCC--ccccc---------CcCCCCEEEeeCCCCcccchhhcCCCCCCEEeccCCcCCcccchhhhcCCCCCcEE
Q 038338          203 LDWCQLED--VAAIG---------QLKKLEILNLADSNIEQLPLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEEL  271 (421)
Q Consensus       203 l~~~~~~~--~~~~~---------~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L  271 (421)
                      +++|....  |..+.         ++++|++|++++|+++.+|..++.+++|++|++++|. +..+|.. ++.+++|++|
T Consensus       157 L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~-l~~l~~~-l~~l~~L~~L  234 (328)
T 4fcg_A          157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSP-LSALGPA-IHHLPKLEEL  234 (328)
T ss_dssp             EEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSC-CCCCCGG-GGGCTTCCEE
T ss_pred             CCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCC-CCcCchh-hccCCCCCEE
Confidence            77766443  55544         3777777777777777777777777777777777754 3455554 6777777777


Q ss_pred             EcccCCCCCccccCCCCcChhhhcCCCCCCEEEEEecCc-cccCCcc-cccCCceEEEEEcCCccchhhhhhchhhhcee
Q 038338          272 YMDNSFSGWEKVEGGSNASLVELKRLTKLTTLEIEVRDA-EILLPDF-VSVELQRYRIRIGDKLEYEIDQLLVKSEALRL  349 (421)
Q Consensus       272 ~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~-~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~  349 (421)
                      ++++|.+....+        ..++.+++|+.|++++|.+ +.+|..+ .+++|+.|+++.+... ..+|..++.+++|+.
T Consensus       235 ~Ls~n~~~~~~p--------~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~-~~iP~~l~~L~~L~~  305 (328)
T 4fcg_A          235 DLRGCTALRNYP--------PIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNL-SRLPSLIAQLPANCI  305 (328)
T ss_dssp             ECTTCTTCCBCC--------CCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTC-CCCCGGGGGSCTTCE
T ss_pred             ECcCCcchhhhH--------HHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCch-hhccHHHhhccCceE
Confidence            777766554433        4466666677776666553 3444333 2244444444322221 233444444444444


Q ss_pred             EEEcC
Q 038338          350 MMLKG  354 (421)
Q Consensus       350 L~l~~  354 (421)
                      +.+..
T Consensus       306 l~l~~  310 (328)
T 4fcg_A          306 ILVPP  310 (328)
T ss_dssp             EECCG
T ss_pred             EeCCH
Confidence            44433

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.90  E-value=6.1e-23  Score=190.07  Aligned_cols=266  Identities=15%  Similarity=0.154  Sum_probs=210.2

Q ss_pred             CCCeEEEcCCCCCccCCcccCCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCC-ChhhhcccCCcEEEc
Q 038338          125 KDPIAISLPQRNIQELPERLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSL-PSSLGRLINLQTLCL  203 (421)
Q Consensus       125 ~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~l  203 (421)
                      .+++.++++++.+..+|... .++++.|++++|.+  ..++...+.++++|++|++++|.++.+ |..++.+++|++|++
T Consensus        31 c~l~~l~~~~~~l~~lp~~~-~~~l~~L~L~~n~i--~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  107 (330)
T 1xku_A           31 CHLRVVQCSDLGLEKVPKDL-PPDTALLDLQNNKI--TEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL  107 (330)
T ss_dssp             EETTEEECTTSCCCSCCCSC-CTTCCEEECCSSCC--CCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred             CCCeEEEecCCCccccCccC-CCCCeEEECCCCcC--CEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence            36788999998888887644 37899999999986  556665568999999999999999886 788999999999999


Q ss_pred             ccccCCC-cccccCcCCCCEEEeeCCCCcccchh-hcCCCCCCEEeccCCcCCc-ccchhhhcCCCCCcEEEcccCCCCC
Q 038338          204 DWCQLED-VAAIGQLKKLEILNLADSNIEQLPLE-IGQLTGLRLLDLTNCWSLQ-VIAPNVISKLSRLEELYMDNSFSGW  280 (421)
Q Consensus       204 ~~~~~~~-~~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~  280 (421)
                      ++|.++. |..+.  ++|++|++++|.+..++.. +..+++|++|++++|.... ......++.+++|++|++++|.+..
T Consensus       108 s~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~  185 (330)
T 1xku_A          108 SKNQLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT  185 (330)
T ss_dssp             CSSCCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS
T ss_pred             CCCcCCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc
Confidence            9999988 76655  7999999999999987664 8899999999999975532 1333348899999999999998876


Q ss_pred             ccccCCCCcChhhhcCCCCCCEEEEEecCccccCC-cc-cccCCceEEEEEcCCccchhhhhhchhhhceeEEEcCCccc
Q 038338          281 EKVEGGSNASLVELKRLTKLTTLEIEVRDAEILLP-DF-VSVELQRYRIRIGDKLEYEIDQLLVKSEALRLMMLKGLEKV  358 (421)
Q Consensus       281 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~  358 (421)
                      .+.         .+  .++|++|++++|.+..++. .+ .+++|+.|+++.+ ......+..+..+++|+.|++++|.+.
T Consensus       186 l~~---------~~--~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~  253 (330)
T 1xku_A          186 IPQ---------GL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFN-SISAVDNGSLANTPHLRELHLNNNKLV  253 (330)
T ss_dssp             CCS---------SC--CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSS-CCCEECTTTGGGSTTCCEEECCSSCCS
T ss_pred             CCc---------cc--cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCC-cCceeChhhccCCCCCCEEECCCCcCc
Confidence            543         12  2789999999999877643 34 5599999999744 444444557889999999999998854


Q ss_pred             ccccchhHHHHhhhcccEEEeccccCcccccccccc---cCCCCCccEEEEeecCc
Q 038338          359 SILQENDGTKMLLQRTEDLWLVKLEGVQNVVHELDD---GEGFPRLKHLHVESCYE  411 (421)
Q Consensus       359 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~---~~~~~~L~~L~i~~c~~  411 (421)
                         .+|.++..+ ++|++|++++|......+..+..   ....+.|+.|++.++|-
T Consensus       254 ---~lp~~l~~l-~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~  305 (330)
T 1xku_A          254 ---KVPGGLADH-KYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPV  305 (330)
T ss_dssp             ---SCCTTTTTC-SSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSS
T ss_pred             ---cCChhhccC-CCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcc
Confidence               566777777 99999999999865433333320   12358899999999973

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.90  E-value=9.5e-23  Score=188.79  Aligned_cols=264  Identities=14%  Similarity=0.153  Sum_probs=207.9

Q ss_pred             ccCCCeEEEcCCCCCccCCc--ccCCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCCChhhhcccCCcE
Q 038338          123 IRKDPIAISLPQRNIQELPE--RLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPSSLGRLINLQT  200 (421)
Q Consensus       123 ~~~~l~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~  200 (421)
                      ..++++.|+++++.+..++.  ..++++|++|++++|.+  ..+....+..+++|++|++++|.++.+|..+.  .+|++
T Consensus        50 ~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l--~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~--~~L~~  125 (330)
T 1xku_A           50 LPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKI--SKISPGAFAPLVKLERLYLSKNQLKELPEKMP--KTLQE  125 (330)
T ss_dssp             CCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCC--CCBCTTTTTTCTTCCEEECCSSCCSBCCSSCC--TTCCE
T ss_pred             CCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcC--CeeCHHHhcCCCCCCEEECCCCcCCccChhhc--ccccE
Confidence            34789999999999977765  34899999999999986  44433345889999999999999999887665  79999


Q ss_pred             EEcccccCCC--cccccCcCCCCEEEeeCCCCc---ccchhhcCCCCCCEEeccCCcCCcccchhhhcCCCCCcEEEccc
Q 038338          201 LCLDWCQLED--VAAIGQLKKLEILNLADSNIE---QLPLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDN  275 (421)
Q Consensus       201 L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~l~---~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~  275 (421)
                      |++++|.+..  +..+.++++|++|++++|.+.   ..+..+..+++|++|++++| .+..+|.. +  .++|++|++++
T Consensus       126 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n-~l~~l~~~-~--~~~L~~L~l~~  201 (330)
T 1xku_A          126 LRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADT-NITTIPQG-L--PPSLTELHLDG  201 (330)
T ss_dssp             EECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSS-CCCSCCSS-C--CTTCSEEECTT
T ss_pred             EECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCC-ccccCCcc-c--cccCCEEECCC
Confidence            9999999988  567899999999999999886   44667899999999999996 45567764 2  38999999999


Q ss_pred             CCCCCccccCCCCcChhhhcCCCCCCEEEEEecCccccCC-cc-cccCCceEEEEEcCCccchhhhhhchhhhceeEEEc
Q 038338          276 SFSGWEKVEGGSNASLVELKRLTKLTTLEIEVRDAEILLP-DF-VSVELQRYRIRIGDKLEYEIDQLLVKSEALRLMMLK  353 (421)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~  353 (421)
                      |.+....+        ..++.+++|+.|++++|.+..++. .+ .+++|+.|+++.+ ... .+|..+..+++|+.|+++
T Consensus       202 n~l~~~~~--------~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~-~lp~~l~~l~~L~~L~l~  271 (330)
T 1xku_A          202 NKITKVDA--------ASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNN-KLV-KVPGGLADHKYIQVVYLH  271 (330)
T ss_dssp             SCCCEECT--------GGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSS-CCS-SCCTTTTTCSSCCEEECC
T ss_pred             CcCCccCH--------HHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCC-cCc-cCChhhccCCCcCEEECC
Confidence            98876654        678899999999999999987765 33 5599999999744 344 667889999999999999


Q ss_pred             CCcccccccchhHHH-----HhhhcccEEEeccccCcc--cccccccccCCCCCccEEEEeec
Q 038338          354 GLEKVSILQENDGTK-----MLLQRTEDLWLVKLEGVQ--NVVHELDDGEGFPRLKHLHVESC  409 (421)
Q Consensus       354 ~~~~~~~~~~~~~~~-----~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~~~~L~~L~i~~c  409 (421)
                      +|.+.....  ..+.     ...+.|+.|++.+|+...  ..+..+.   .+++|+.+++++|
T Consensus       272 ~N~i~~~~~--~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~---~~~~l~~l~L~~N  329 (330)
T 1xku_A          272 NNNISAIGS--NDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFR---CVYVRAAVQLGNY  329 (330)
T ss_dssp             SSCCCCCCT--TSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGT---TCCCGGGEEC---
T ss_pred             CCcCCccCh--hhcCCcccccccccccceEeecCcccccccCccccc---cccceeEEEeccc
Confidence            998643211  1111     113789999999998642  2233444   7899999999876

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.90  E-value=2.5e-23  Score=200.68  Aligned_cols=147  Identities=15%  Similarity=0.135  Sum_probs=94.2

Q ss_pred             cCccCCCeEEEcCCCCCccCCcccCCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCCChhhhcccCCcE
Q 038338          121 ETIRKDPIAISLPQRNIQELPERLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPSSLGRLINLQT  200 (421)
Q Consensus       121 ~~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~  200 (421)
                      +..+++++.|+++++.+..+|....+++|+.|++++|.+  ..++   ++.+++|++|++++|.++.+|  ++.+++|++
T Consensus        38 ~~~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l--~~~~---~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~  110 (457)
T 3bz5_A           38 EEQLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNI--TTLD---LSQNTNLTYLACDSNKLTNLD--VTPLTKLTY  110 (457)
T ss_dssp             HHHHTTCCEEECCSSCCCCCTTGGGCTTCSEEECCSSCC--SCCC---CTTCTTCSEEECCSSCCSCCC--CTTCTTCCE
T ss_pred             hhHcCCCCEEEccCCCcccChhhcccCCCCEEEccCCcC--CeEc---cccCCCCCEEECcCCCCceee--cCCCCcCCE
Confidence            445566777777777666666555667777777777764  3333   356677777777777766654  666777777


Q ss_pred             EEcccccCCCcccccCcCCCCEEEeeCCCCcccchhhcCCCCCCEEeccCCcCCcccchhhhcCCCCCcEEEcccCCCCC
Q 038338          201 LCLDWCQLEDVAAIGQLKKLEILNLADSNIEQLPLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNSFSGW  280 (421)
Q Consensus       201 L~l~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  280 (421)
                      |++++|.++..+ ++++++|++|++++|+++.++  ++.+++|++|++++|...+.++   ++.+++|++|++++|.++.
T Consensus       111 L~L~~N~l~~l~-~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~~---~~~l~~L~~L~ls~n~l~~  184 (457)
T 3bz5_A          111 LNCDTNKLTKLD-VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKLD---VTPQTQLTTLDCSFNKITE  184 (457)
T ss_dssp             EECCSSCCSCCC-CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCCC---CTTCTTCCEEECCSSCCCC
T ss_pred             EECCCCcCCeec-CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCcccccc---cccCCcCCEEECCCCccce
Confidence            777777666621 666677777777777666653  5666677777776665555542   4566666666666665544

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.90  E-value=2.4e-23  Score=192.95  Aligned_cols=263  Identities=15%  Similarity=0.165  Sum_probs=182.6

Q ss_pred             cCCCeEEEcCCCCCccCCc--ccCCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCCChhhhcccCCcEE
Q 038338          124 RKDPIAISLPQRNIQELPE--RLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPSSLGRLINLQTL  201 (421)
Q Consensus       124 ~~~l~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L  201 (421)
                      .++++.|+++++.+..++.  ..++++|+.|++++|.+  ..++...+.++++|++|++++|.+..+|..+.  .+|++|
T Consensus        53 ~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l--~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~L~~L  128 (332)
T 2ft3_A           53 SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKI--SKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP--SSLVEL  128 (332)
T ss_dssp             CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC--CEECGGGSTTCTTCCEEECCSSCCCSCCSSCC--TTCCEE
T ss_pred             CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCcc--CccCHhHhhCcCCCCEEECCCCcCCccCcccc--ccCCEE
Confidence            4678888888888766643  33788888888888875  44434445778888888888888887777655  788888


Q ss_pred             EcccccCCC-c-ccccCcCCCCEEEeeCCCCc---ccchhhcCCCCCCEEeccCCcCCcccchhhhcCCCCCcEEEcccC
Q 038338          202 CLDWCQLED-V-AAIGQLKKLEILNLADSNIE---QLPLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNS  276 (421)
Q Consensus       202 ~l~~~~~~~-~-~~~~~l~~L~~L~l~~~~l~---~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~  276 (421)
                      ++++|.+.. + ..+.++++|++|++++|.++   ..|..+..+ +|++|++++|. +..+|.. +  .++|++|++++|
T Consensus       129 ~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~-l~~l~~~-~--~~~L~~L~l~~n  203 (332)
T 2ft3_A          129 RIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAK-LTGIPKD-L--PETLNELHLDHN  203 (332)
T ss_dssp             ECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSB-CSSCCSS-S--CSSCSCCBCCSS
T ss_pred             ECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCC-CCccCcc-c--cCCCCEEECCCC
Confidence            888888777 3 45788888888888888775   334556666 88888888853 4556654 2  267888888888


Q ss_pred             CCCCccccCCCCcChhhhcCCCCCCEEEEEecCccccCCc-c-cccCCceEEEEEcCCccchhhhhhchhhhceeEEEcC
Q 038338          277 FSGWEKVEGGSNASLVELKRLTKLTTLEIEVRDAEILLPD-F-VSVELQRYRIRIGDKLEYEIDQLLVKSEALRLMMLKG  354 (421)
Q Consensus       277 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~  354 (421)
                      .+....+        ..+..+++|+.|++++|.+..++.. + .+++|+.|+++.+ .+. .+|..+..+++|+.|++++
T Consensus       204 ~i~~~~~--------~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~-~lp~~l~~l~~L~~L~l~~  273 (332)
T 2ft3_A          204 KIQAIEL--------EDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNN-KLS-RVPAGLPDLKLLQVVYLHT  273 (332)
T ss_dssp             CCCCCCT--------TSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSS-CCC-BCCTTGGGCTTCCEEECCS
T ss_pred             cCCccCH--------HHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCC-cCe-ecChhhhcCccCCEEECCC
Confidence            7776544        5677888888888888888777653 3 4588888888743 344 5677788888899999988


Q ss_pred             CcccccccchhHHHHh-----hhcccEEEeccccCc--ccccccccccCCCCCccEEEEeecC
Q 038338          355 LEKVSILQENDGTKML-----LQRTEDLWLVKLEGV--QNVVHELDDGEGFPRLKHLHVESCY  410 (421)
Q Consensus       355 ~~~~~~~~~~~~~~~~-----~~~L~~L~l~~~~~~--~~~~~~~~~~~~~~~L~~L~i~~c~  410 (421)
                      |.+....  +..+...     ++.|+.|++.+|+..  ...+..+.   .+++|+.+++.+|.
T Consensus       274 N~l~~~~--~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~---~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          274 NNITKVG--VNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFR---CVTDRLAIQFGNYK  331 (332)
T ss_dssp             SCCCBCC--TTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGT---TBCCSTTEEC----
T ss_pred             CCCCccC--hhHccccccccccccccceEeecCcccccccCccccc---ccchhhhhhccccc
Confidence            8753221  1112111     367888888888765  33334344   78888888888775

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.90  E-value=2.2e-23  Score=208.41  Aligned_cols=273  Identities=17%  Similarity=0.140  Sum_probs=192.5

Q ss_pred             ccCCCeEEEcCCCCCccCCccc--CCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCCCh-hhhcccCCc
Q 038338          123 IRKDPIAISLPQRNIQELPERL--QCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPS-SLGRLINLQ  199 (421)
Q Consensus       123 ~~~~l~~l~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L~  199 (421)
                      .+.+++.+++.++.+..+|...  .+++|++|++++|.+  ..++...|..+++|++|++++|.+..+|+ .++.+++|+
T Consensus        49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l--~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  126 (597)
T 3oja_B           49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQI--EEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT  126 (597)
T ss_dssp             GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCC--CEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCC--CCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCC
Confidence            4678899999999888888654  789999999999986  45555456889999999999999988655 468999999


Q ss_pred             EEEcccccCCC-ccc-ccCcCCCCEEEeeCCCCcccch-hhcCCCCCCEEeccCCcCCcccchhhhcCCCCCcEEEcccC
Q 038338          200 TLCLDWCQLED-VAA-IGQLKKLEILNLADSNIEQLPL-EIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNS  276 (421)
Q Consensus       200 ~L~l~~~~~~~-~~~-~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~  276 (421)
                      +|++++|.+.. |.. ++++++|++|++++|.+..+++ .++.+++|++|++++|. +..++   ++.+++|+.|++++|
T Consensus       127 ~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~---~~~l~~L~~L~l~~n  202 (597)
T 3oja_B          127 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR-LTHVD---LSLIPSLFHANVSYN  202 (597)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSC-CSBCC---GGGCTTCSEEECCSS
T ss_pred             EEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCC-CCCcC---hhhhhhhhhhhcccC
Confidence            99999999888 554 5899999999999999987655 58899999999999964 44444   467889999999998


Q ss_pred             CCCCccccCC-------CCcChh-hhcCCCCCCEEEEEecCccccCCcccccCCceEEEEEcCCccchhhhhhchhhhce
Q 038338          277 FSGWEKVEGG-------SNASLV-ELKRLTKLTTLEIEVRDAEILLPDFVSVELQRYRIRIGDKLEYEIDQLLVKSEALR  348 (421)
Q Consensus       277 ~~~~~~~~~~-------~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~  348 (421)
                      .+........       ...+.. .-...++|+.|++++|.+...+....+++|+.|+++. +.+....|..++.+++|+
T Consensus       203 ~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~  281 (597)
T 3oja_B          203 LLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSY-NELEKIMYHPFVKMQRLE  281 (597)
T ss_dssp             CCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCS-SCCCEEESGGGTTCSSCC
T ss_pred             ccccccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCChhhccCCCCCEEECCC-CccCCCCHHHhcCccCCC
Confidence            7765322110       000000 0011235666666666665543333557777777763 334444566677777777


Q ss_pred             eEEEcCCcccccccchhHHHHhhhcccEEEeccccCcccccccccccCCCCCccEEEEeecC
Q 038338          349 LMMLKGLEKVSILQENDGTKMLLQRTEDLWLVKLEGVQNVVHELDDGEGFPRLKHLHVESCY  410 (421)
Q Consensus       349 ~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~i~~c~  410 (421)
                      .|++++|.+..   .+..+..+ ++|++|++++|... .+|..+.   .+++|+.|++++|+
T Consensus       282 ~L~Ls~N~l~~---l~~~~~~l-~~L~~L~Ls~N~l~-~i~~~~~---~l~~L~~L~L~~N~  335 (597)
T 3oja_B          282 RLYISNNRLVA---LNLYGQPI-PTLKVLDLSHNHLL-HVERNQP---QFDRLENLYLDHNS  335 (597)
T ss_dssp             EEECTTSCCCE---EECSSSCC-TTCCEEECCSSCCC-CCGGGHH---HHTTCSEEECCSSC
T ss_pred             EEECCCCCCCC---CCcccccC-CCCcEEECCCCCCC-ccCcccc---cCCCCCEEECCCCC
Confidence            77777766432   23333334 77788888777654 4555444   67788888887764

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.90  E-value=7.1e-23  Score=212.66  Aligned_cols=287  Identities=18%  Similarity=0.173  Sum_probs=191.4

Q ss_pred             CCCcccccccCccCCCeEEEcCCCCCccCC--cccCCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCC-
Q 038338          112 VADLEKKMEETIRKDPIAISLPQRNIQELP--ERLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSL-  188 (421)
Q Consensus       112 ~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-  188 (421)
                      ...+..+|.  .++++++|++++|.+..++  ...++++|++|++++|.. ...++...|.++++|++|++++|.+..+ 
T Consensus        13 ~~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~-~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~   89 (844)
T 3j0a_A           13 FCNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYT-PLTIDKEAFRNLPNLRILDLGSSKIYFLH   89 (844)
T ss_dssp             CCCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCC-CCEECTTTTSSCTTCCEEECTTCCCCEEC
T ss_pred             CCCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCC-ccccCHHHhcCCCCCCEEECCCCcCcccC
Confidence            444555565  6789999999999986553  233899999999999966 6677555568999999999999999874 


Q ss_pred             ChhhhcccCCcEEEcccccCCC--ccc--ccCcCCCCEEEeeCCCCccc--chhhcCCCCCCEEeccCCcCCcccchhhh
Q 038338          189 PSSLGRLINLQTLCLDWCQLED--VAA--IGQLKKLEILNLADSNIEQL--PLEIGQLTGLRLLDLTNCWSLQVIAPNVI  262 (421)
Q Consensus       189 p~~i~~l~~L~~L~l~~~~~~~--~~~--~~~l~~L~~L~l~~~~l~~l--p~~~~~l~~L~~L~l~~~~~~~~~~~~~l  262 (421)
                      |..++.+.+|++|++++|.+.+  |..  ++++++|++|++++|.+..+  +..++++++|++|++++|...+..+.. +
T Consensus        90 p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~-l  168 (844)
T 3j0a_A           90 PDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHE-L  168 (844)
T ss_dssp             TTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGG-G
T ss_pred             HhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHH-c
Confidence            7889999999999999999876  444  88999999999999998855  356899999999999987544333322 3


Q ss_pred             cCC--CC------------------------------CcEEEcccCCCCCccccC-----CC------------------
Q 038338          263 SKL--SR------------------------------LEELYMDNSFSGWEKVEG-----GS------------------  287 (421)
Q Consensus       263 ~~l--~~------------------------------L~~L~l~~~~~~~~~~~~-----~~------------------  287 (421)
                      +.+  ++                              |++|++++|.+....+..     ..                  
T Consensus       169 ~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~  248 (844)
T 3j0a_A          169 EPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFG  248 (844)
T ss_dssp             HHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSS
T ss_pred             ccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccccccccc
Confidence            333  33                              555555555332211100     00                  


Q ss_pred             -----CcChhhhcC--CCCCCEEEEEecCccccCCc-c-cccCCceEEEEEcCCccchhhhhhchhhhceeEEEcCCccc
Q 038338          288 -----NASLVELKR--LTKLTTLEIEVRDAEILLPD-F-VSVELQRYRIRIGDKLEYEIDQLLVKSEALRLMMLKGLEKV  358 (421)
Q Consensus       288 -----~~~~~~l~~--l~~L~~L~l~~~~~~~~~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~  358 (421)
                           ......+..  .++|+.|++++|.+..++.. + .+++|+.|++.. +......+..+..+++|++|++++|.+.
T Consensus       249 ~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~-n~i~~~~~~~~~~l~~L~~L~Ls~N~l~  327 (844)
T 3j0a_A          249 FHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAY-NKINKIADEAFYGLDNLQVLNLSYNLLG  327 (844)
T ss_dssp             CSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEES-CCCCEECTTTTTTCSSCCEEEEESCCCS
T ss_pred             ccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCC-CcCCCCChHHhcCCCCCCEEECCCCCCC
Confidence                 000011111  25677777777776554433 2 347788888763 3344344566777778888888887642


Q ss_pred             ccccchhHHHHhhhcccEEEeccccCcccccccccccCCCCCccEEEEeec
Q 038338          359 SILQENDGTKMLLQRTEDLWLVKLEGVQNVVHELDDGEGFPRLKHLHVESC  409 (421)
Q Consensus       359 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~i~~c  409 (421)
                        ...+..+..+ ++|++|++++|......+..+.   ++++|+.|++++|
T Consensus       328 --~~~~~~~~~l-~~L~~L~L~~N~i~~~~~~~~~---~l~~L~~L~Ls~N  372 (844)
T 3j0a_A          328 --ELYSSNFYGL-PKVAYIDLQKNHIAIIQDQTFK---FLEKLQTLDLRDN  372 (844)
T ss_dssp             --CCCSCSCSSC-TTCCEEECCSCCCCCCCSSCSC---SCCCCCEEEEETC
T ss_pred             --ccCHHHhcCC-CCCCEEECCCCCCCccChhhhc---CCCCCCEEECCCC
Confidence              2223445555 7788888877755333333333   6777777777776

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.90  E-value=2e-23  Score=209.53  Aligned_cols=271  Identities=17%  Similarity=0.048  Sum_probs=213.1

Q ss_pred             cccCccCCCeEEEcCCCCCccCCcccCCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCCChhhhcccCC
Q 038338          119 MEETIRKDPIAISLPQRNIQELPERLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPSSLGRLINL  198 (421)
Q Consensus       119 ~~~~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L  198 (421)
                      +....+++++.+++.++.+..++....+++|+.|++++|.+  ..+|.  + .+++|++|++++|.... +..++.+++|
T Consensus       279 ~~~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l--~~lp~--~-~l~~L~~L~l~~n~~~~-~~~~~~l~~L  352 (606)
T 3vq2_A          279 VKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQL--KQFPT--L-DLPFLKSLTLTMNKGSI-SFKKVALPSL  352 (606)
T ss_dssp             GSCGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCC--SSCCC--C-CCSSCCEEEEESCSSCE-ECCCCCCTTC
T ss_pred             cccccCCCCCEEEecCccchhhhhccccccCCEEEcccccC--ccccc--C-CCCccceeeccCCcCcc-chhhccCCCC
Confidence            34567788999999999988888666889999999999985  66773  2 78999999999984433 1146788899


Q ss_pred             cEEEcccccCCC----cccccCcCCCCEEEeeCCCCcccchhhcCCCCCCEEeccCCcCCcccchhhhcCCCCCcEEEcc
Q 038338          199 QTLCLDWCQLED----VAAIGQLKKLEILNLADSNIEQLPLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMD  274 (421)
Q Consensus       199 ~~L~l~~~~~~~----~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~  274 (421)
                      ++|++++|.+..    +..+..+++|++|++++|.+..+|..+..+++|++|++++|...+..+...+..+++|++|+++
T Consensus       353 ~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~  432 (606)
T 3vq2_A          353 SYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDIS  432 (606)
T ss_dssp             CEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECT
T ss_pred             CEEECcCCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECc
Confidence            999999998765    4677889999999999999888888888999999999999765555553447889999999999


Q ss_pred             cCCCCCccccCCCCcChhhhcCCCCCCEEEEEecCccc--cCCcc-cccCCceEEEEEcCCccchhhhhhchhhhceeEE
Q 038338          275 NSFSGWEKVEGGSNASLVELKRLTKLTTLEIEVRDAEI--LLPDF-VSVELQRYRIRIGDKLEYEIDQLLVKSEALRLMM  351 (421)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~--~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~  351 (421)
                      +|.+....+        ..++.+++|++|++++|.+..  +|..+ .+++|+.|+++.+ ......|..++.+++|+.|+
T Consensus       433 ~n~l~~~~~--------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~  503 (606)
T 3vq2_A          433 YTNTKIDFD--------GIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKC-QLEQISWGVFDTLHRLQLLN  503 (606)
T ss_dssp             TSCCEECCT--------TTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEE
T ss_pred             CCCCCccch--------hhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCC-cCCccChhhhcccccCCEEE
Confidence            988766544        567888999999999988764  56665 5599999999744 44445667788999999999


Q ss_pred             EcCCcccccccchhHHHHhhhcccEEEeccccCcccccccccccCCCC-CccEEEEeecCc
Q 038338          352 LKGLEKVSILQENDGTKMLLQRTEDLWLVKLEGVQNVVHELDDGEGFP-RLKHLHVESCYE  411 (421)
Q Consensus       352 l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~-~L~~L~i~~c~~  411 (421)
                      +++|.+.  ...|..+..+ ++|++|++++|.. ..+|..+.   .++ +|+.|++.+||-
T Consensus       504 Ls~N~l~--~~~~~~~~~l-~~L~~L~l~~N~l-~~~p~~~~---~l~~~L~~l~l~~N~~  557 (606)
T 3vq2_A          504 MSHNNLL--FLDSSHYNQL-YSLSTLDCSFNRI-ETSKGILQ---HFPKSLAFFNLTNNSV  557 (606)
T ss_dssp             CCSSCCS--CEEGGGTTTC-TTCCEEECTTSCC-CCEESCGG---GSCTTCCEEECCSCCC
T ss_pred             CCCCcCC--CcCHHHccCC-CcCCEEECCCCcC-cccCHhHh---hhcccCcEEEccCCCc
Confidence            9998843  3346667777 8999999999875 46776665   776 599999988763

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.90  E-value=1.2e-22  Score=201.72  Aligned_cols=106  Identities=12%  Similarity=0.116  Sum_probs=56.6

Q ss_pred             hcCCCCCCEEEEEecCccc-cCCcc--cccCCceEEEEEcCCccchhhhhhchhhhceeEEEcCCcccccccchhHHHHh
Q 038338          294 LKRLTKLTTLEIEVRDAEI-LLPDF--VSVELQRYRIRIGDKLEYEIDQLLVKSEALRLMMLKGLEKVSILQENDGTKML  370 (421)
Q Consensus       294 l~~l~~L~~L~l~~~~~~~-~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~  370 (421)
                      ++++++|+.|++++|.+.. +|...  ..++|+.|+++.+ ......|..+.  ++|+.|++++|.+.   .+|.++..+
T Consensus       399 ~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~l~--~~L~~L~L~~N~l~---~ip~~~~~l  472 (562)
T 3a79_B          399 TKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSN-MLTGSVFRCLP--PKVKVLDLHNNRIM---SIPKDVTHL  472 (562)
T ss_dssp             TTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSS-CCCGGGGSSCC--TTCSEEECCSSCCC---CCCTTTTSS
T ss_pred             hcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCC-CCCcchhhhhc--CcCCEEECCCCcCc---ccChhhcCC
Confidence            4555555555555555543 44432  2355666665532 22222332222  56666666666532   344444444


Q ss_pred             hhcccEEEeccccCccccccc-ccccCCCCCccEEEEeecC
Q 038338          371 LQRTEDLWLVKLEGVQNVVHE-LDDGEGFPRLKHLHVESCY  410 (421)
Q Consensus       371 ~~~L~~L~l~~~~~~~~~~~~-~~~~~~~~~L~~L~i~~c~  410 (421)
                       ++|++|++++|... .+|.. +.   .+++|+.|++++|+
T Consensus       473 -~~L~~L~L~~N~l~-~l~~~~~~---~l~~L~~L~l~~N~  508 (562)
T 3a79_B          473 -QALQELNVASNQLK-SVPDGVFD---RLTSLQYIWLHDNP  508 (562)
T ss_dssp             -CCCSEEECCSSCCC-CCCTTSTT---TCTTCCCEECCSCC
T ss_pred             -CCCCEEECCCCCCC-CCCHHHHh---cCCCCCEEEecCCC
Confidence             67777777766543 45443 33   66777777777664

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.90  E-value=1.3e-22  Score=199.65  Aligned_cols=155  Identities=14%  Similarity=0.093  Sum_probs=105.9

Q ss_pred             cCCCCCCEEeccCCcCCcccchhhhcCCCCCcEEEcccCCCCCccccCCCCcChhhhcCCCCCCEEEEEecCccc-cCCc
Q 038338          238 GQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNSFSGWEKVEGGSNASLVELKRLTKLTTLEIEVRDAEI-LLPD  316 (421)
Q Consensus       238 ~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~  316 (421)
                      ..+++|++|++++|...+..|.. ++.+++|++|++++|.+.....      .+..++.+++|++|++++|.+.. +|..
T Consensus       321 ~~l~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~L~~N~l~~l~~------~~~~~~~l~~L~~L~Ls~N~l~~~l~~~  393 (520)
T 2z7x_B          321 SKISPFLHLDFSNNLLTDTVFEN-CGHLTELETLILQMNQLKELSK------IAEMTTQMKSLQQLDISQNSVSYDEKKG  393 (520)
T ss_dssp             SSCCCCCEEECCSSCCCTTTTTT-CCCCSSCCEEECCSSCCCBHHH------HHHHHTTCTTCCEEECCSSCCBCCGGGC
T ss_pred             hhCCcccEEEeECCccChhhhhh-hccCCCCCEEEccCCccCcccc------chHHHhhCCCCCEEECCCCcCCcccccc
Confidence            45666677777766544444443 5667777777777776654211      22457788888888888888876 7765


Q ss_pred             c--cccCCceEEEEEcCCccchhhhhhchhhhceeEEEcCCcccccccchhHHHHhhhcccEEEeccccCccccccc-cc
Q 038338          317 F--VSVELQRYRIRIGDKLEYEIDQLLVKSEALRLMMLKGLEKVSILQENDGTKMLLQRTEDLWLVKLEGVQNVVHE-LD  393 (421)
Q Consensus       317 ~--~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~  393 (421)
                      .  .+++|+.|+++.+ ......|..+.  ++|+.|++++|.+.   .+|.++..+ ++|++|++++|... .+|.. +.
T Consensus       394 ~~~~l~~L~~L~Ls~N-~l~~~~~~~l~--~~L~~L~Ls~N~l~---~ip~~~~~l-~~L~~L~L~~N~l~-~l~~~~~~  465 (520)
T 2z7x_B          394 DCSWTKSLLSLNMSSN-ILTDTIFRCLP--PRIKVLDLHSNKIK---SIPKQVVKL-EALQELNVASNQLK-SVPDGIFD  465 (520)
T ss_dssp             SCCCCTTCCEEECCSS-CCCGGGGGSCC--TTCCEEECCSSCCC---CCCGGGGGC-TTCCEEECCSSCCC-CCCTTTTT
T ss_pred             hhccCccCCEEECcCC-CCCcchhhhhc--ccCCEEECCCCccc---ccchhhhcC-CCCCEEECCCCcCC-ccCHHHhc
Confidence            2  4488888888744 34334444443  78999999998753   466666666 89999999998654 56654 44


Q ss_pred             ccCCCCCccEEEEeecC
Q 038338          394 DGEGFPRLKHLHVESCY  410 (421)
Q Consensus       394 ~~~~~~~L~~L~i~~c~  410 (421)
                         .+++|+.|++++|+
T Consensus       466 ---~l~~L~~L~l~~N~  479 (520)
T 2z7x_B          466 ---RLTSLQKIWLHTNP  479 (520)
T ss_dssp             ---TCTTCCEEECCSSC
T ss_pred             ---cCCcccEEECcCCC
Confidence               78999999998886

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.90  E-value=6.6e-23  Score=204.15  Aligned_cols=156  Identities=26%  Similarity=0.272  Sum_probs=118.4

Q ss_pred             ccCCCeEEEcCCCCCccCCc--ccCCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCCC-hhhhcccCCc
Q 038338          123 IRKDPIAISLPQRNIQELPE--RLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLP-SSLGRLINLQ  199 (421)
Q Consensus       123 ~~~~l~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp-~~i~~l~~L~  199 (421)
                      ..+++++|+++++.+..++.  ..++++|++|++++|.+  ..++...|.++++|++|++++|.++.+| ..++.+.+|+
T Consensus        26 l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i--~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  103 (570)
T 2z63_A           26 LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEI--QTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQ  103 (570)
T ss_dssp             SCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCC--CEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCC
T ss_pred             ccccccEEEccCCccCccChhHhhCCCCceEEECCCCcC--CccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccc
Confidence            35678899999988866653  34888999999998875  5565555688899999999999888754 6788899999


Q ss_pred             EEEcccccCCC-c-ccccCcCCCCEEEeeCCCCcc--cchhhcCCCCCCEEeccCCcCCcccchhhhcCCCCC----cEE
Q 038338          200 TLCLDWCQLED-V-AAIGQLKKLEILNLADSNIEQ--LPLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRL----EEL  271 (421)
Q Consensus       200 ~L~l~~~~~~~-~-~~~~~l~~L~~L~l~~~~l~~--lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L----~~L  271 (421)
                      +|++++|.+.. + ..++++++|++|++++|.+..  +|..++++++|++|++++|.. ..++...++.+++|    +.|
T Consensus       104 ~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~~~~~L  182 (570)
T 2z63_A          104 KLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI-QSIYCTDLRVLHQMPLLNLSL  182 (570)
T ss_dssp             EEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCC-CEECGGGGHHHHTCTTCCCEE
T ss_pred             cccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCcc-ceecHHHccchhccchhhhhc
Confidence            99999988887 3 368889999999999988874  688888999999999988644 44443335555555    667


Q ss_pred             EcccCCCCCc
Q 038338          272 YMDNSFSGWE  281 (421)
Q Consensus       272 ~l~~~~~~~~  281 (421)
                      ++++|.+...
T Consensus       183 ~l~~n~l~~~  192 (570)
T 2z63_A          183 DLSLNPMNFI  192 (570)
T ss_dssp             ECTTCCCCEE
T ss_pred             ccCCCCceec
Confidence            7766655443

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.90  E-value=1.4e-22  Score=201.29  Aligned_cols=123  Identities=20%  Similarity=0.240  Sum_probs=75.0

Q ss_pred             CCCeEEEcCCCCCccCCc--ccCCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCCChhhhcccCCcEEE
Q 038338          125 KDPIAISLPQRNIQELPE--RLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPSSLGRLINLQTLC  202 (421)
Q Consensus       125 ~~l~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~  202 (421)
                      +++++|++++|.+..++.  ...+++|++|++++|.+  ..++...|.++++|++|++++|.++.+|..  .+.+|++|+
T Consensus        52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l--~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~  127 (562)
T 3a79_B           52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRI--RSLDFHVFLFNQDLEYLDVSHNRLQNISCC--PMASLRHLD  127 (562)
T ss_dssp             TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCC--CEECTTTTTTCTTCCEEECTTSCCCEECSC--CCTTCSEEE
T ss_pred             CCcCEEECCCCCccccChhhhccCCCccEEECCCCCC--CcCCHHHhCCCCCCCEEECCCCcCCccCcc--ccccCCEEE
Confidence            566667777666655542  23666677777766664  334333346666677777777666666654  566677777


Q ss_pred             cccccCCC---cccccCcCCCCEEEeeCCCCcccchhhcCCCCC--CEEeccCCcC
Q 038338          203 LDWCQLED---VAAIGQLKKLEILNLADSNIEQLPLEIGQLTGL--RLLDLTNCWS  253 (421)
Q Consensus       203 l~~~~~~~---~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L--~~L~l~~~~~  253 (421)
                      +++|.+..   |..++++++|++|++++|.+..  ..+..+++|  ++|++++|..
T Consensus       128 Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~L~~n~l  181 (562)
T 3a79_B          128 LSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ--LDLLPVAHLHLSCILLDLVSY  181 (562)
T ss_dssp             CCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT--TTTGGGTTSCEEEEEEEESSC
T ss_pred             CCCCCccccCchHhhcccCcccEEecCCCcccc--CchhhhhhceeeEEEeecccc
Confidence            77666655   2566666777777777666654  234444444  6666666544

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.90  E-value=8.7e-23  Score=185.00  Aligned_cols=264  Identities=19%  Similarity=0.199  Sum_probs=188.3

Q ss_pred             eEEEcCCCCCccCCcccCCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCC-ChhhhcccCCcEEEcccc
Q 038338          128 IAISLPQRNIQELPERLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSL-PSSLGRLINLQTLCLDWC  206 (421)
Q Consensus       128 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~~  206 (421)
                      +.++..++.+..+|.. -.++++.|++++|.+  ..++...|..+++|++|++++|.++.+ |..+..+++|++|++++|
T Consensus        14 ~~~~c~~~~l~~ip~~-~~~~l~~L~l~~n~i--~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n   90 (285)
T 1ozn_A           14 VTTSCPQQGLQAVPVG-IPAASQRIFLHGNRI--SHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN   90 (285)
T ss_dssp             CEEECCSSCCSSCCTT-CCTTCSEEECTTSCC--CEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred             eEEEcCcCCcccCCcC-CCCCceEEEeeCCcC--CccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence            5677777777777643 346888888888875  555555567888888888888888775 667888888888888888


Q ss_pred             c-CCC--cccccCcCCCCEEEeeCCCCccc-chhhcCCCCCCEEeccCCcCCcccchhhhcCCCCCcEEEcccCCCCCcc
Q 038338          207 Q-LED--VAAIGQLKKLEILNLADSNIEQL-PLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNSFSGWEK  282 (421)
Q Consensus       207 ~-~~~--~~~~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~  282 (421)
                      . +..  +..+..+++|++|++++|.+..+ |..+..+++|++|++++| .+..++...++.+++|++|++++|.+...+
T Consensus        91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  169 (285)
T 1ozn_A           91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDN-ALQALPDDTFRDLGNLTHLFLHGNRISSVP  169 (285)
T ss_dssp             TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred             CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCC-cccccCHhHhccCCCccEEECCCCcccccC
Confidence            6 666  67788888888888888888866 455778888888888886 445566555778888888888888777554


Q ss_pred             ccCCCCcChhhhcCCCCCCEEEEEecCcccc-CCcc-cccCCceEEEEEcCCccchhhhhhchhhhceeEEEcCCccccc
Q 038338          283 VEGGSNASLVELKRLTKLTTLEIEVRDAEIL-LPDF-VSVELQRYRIRIGDKLEYEIDQLLVKSEALRLMMLKGLEKVSI  360 (421)
Q Consensus       283 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~  360 (421)
                      .        ..+..+++|+.|++++|.+..+ |..+ .+++|+.|++..+ .+....+..+..+++|+.|++++|.+...
T Consensus       170 ~--------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  240 (285)
T 1ozn_A          170 E--------RAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN-NLSALPTEALAPLRALQYLRLNDNPWVCD  240 (285)
T ss_dssp             T--------TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCHHHHTTCTTCCEEECCSSCEECS
T ss_pred             H--------HHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCC-cCCcCCHHHcccCcccCEEeccCCCccCC
Confidence            4        4577788888888888888655 4444 4588888888743 44434456688899999999999886443


Q ss_pred             ccchhHHHHhhhcccEEEeccccCcccccccccccCCCCCccEEEEeec
Q 038338          361 LQENDGTKMLLQRTEDLWLVKLEGVQNVVHELDDGEGFPRLKHLHVESC  409 (421)
Q Consensus       361 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~i~~c  409 (421)
                      .... ++.   ..++.+....+...-..|..+. ...+..++..++.+|
T Consensus       241 ~~~~-~~~---~~l~~~~~~~~~~~c~~p~~l~-g~~l~~l~~~~l~~C  284 (285)
T 1ozn_A          241 CRAR-PLW---AWLQKFRGSSSEVPCSLPQRLA-GRDLKRLAANDLQGC  284 (285)
T ss_dssp             GGGH-HHH---HHHHHCCSEECCCBEEESGGGT-TCBGGGSCGGGSCCC
T ss_pred             CCcH-HHH---HHHHhcccccCccccCCchHhC-CcChhhcCHHHhccC
Confidence            3332 221   3344444555554445565554 455677777777776

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.89  E-value=8.1e-23  Score=189.40  Aligned_cols=264  Identities=15%  Similarity=0.172  Sum_probs=209.0

Q ss_pred             CCeEEEcCCCCCccCCcccCCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCC-ChhhhcccCCcEEEcc
Q 038338          126 DPIAISLPQRNIQELPERLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSL-PSSLGRLINLQTLCLD  204 (421)
Q Consensus       126 ~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~l~  204 (421)
                      +++.++++++.+..+|... .++++.|++++|.+  ..++...+.++++|++|++++|.++.+ |..++.+++|++|+++
T Consensus        34 ~l~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n~i--~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  110 (332)
T 2ft3_A           34 HLRVVQCSDLGLKAVPKEI-SPDTTLLDLQNNDI--SELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS  110 (332)
T ss_dssp             ETTEEECCSSCCSSCCSCC-CTTCCEEECCSSCC--CEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred             cCCEEECCCCCccccCCCC-CCCCeEEECCCCcC--CccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence            5788999999988888654 47999999999986  556555568999999999999999885 7789999999999999


Q ss_pred             cccCCC-cccccCcCCCCEEEeeCCCCcccchh-hcCCCCCCEEeccCCcCCc-ccchhhhcCCCCCcEEEcccCCCCCc
Q 038338          205 WCQLED-VAAIGQLKKLEILNLADSNIEQLPLE-IGQLTGLRLLDLTNCWSLQ-VIAPNVISKLSRLEELYMDNSFSGWE  281 (421)
Q Consensus       205 ~~~~~~-~~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~  281 (421)
                      +|.+.. |..+.  ++|++|++++|.+..+|.. +..+++|++|++++|.... ......++.+ +|++|++++|.+...
T Consensus       111 ~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l  187 (332)
T 2ft3_A          111 KNHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGI  187 (332)
T ss_dssp             SSCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSC
T ss_pred             CCcCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCcc
Confidence            999988 76665  8999999999999988765 8899999999999975532 1333336667 999999999987765


Q ss_pred             cccCCCCcChhhhcCCCCCCEEEEEecCccccCC-cc-cccCCceEEEEEcCCccchhhhhhchhhhceeEEEcCCcccc
Q 038338          282 KVEGGSNASLVELKRLTKLTTLEIEVRDAEILLP-DF-VSVELQRYRIRIGDKLEYEIDQLLVKSEALRLMMLKGLEKVS  359 (421)
Q Consensus       282 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~  359 (421)
                      +.         .+.  ++|++|++++|.+..++. .+ .+++|+.|+++. +......+..+..+++|+.|++++|.+. 
T Consensus       188 ~~---------~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~l~-  254 (332)
T 2ft3_A          188 PK---------DLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGH-NQIRMIENGSLSFLPTLRELHLDNNKLS-  254 (332)
T ss_dssp             CS---------SSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCS-SCCCCCCTTGGGGCTTCCEEECCSSCCC-
T ss_pred             Cc---------ccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCC-CcCCcCChhHhhCCCCCCEEECCCCcCe-
Confidence            43         122  689999999999987764 33 559999999974 4444445567899999999999998854 


Q ss_pred             cccchhHHHHhhhcccEEEeccccCcccccccccc---cCCCCCccEEEEeecCc
Q 038338          360 ILQENDGTKMLLQRTEDLWLVKLEGVQNVVHELDD---GEGFPRLKHLHVESCYE  411 (421)
Q Consensus       360 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~---~~~~~~L~~L~i~~c~~  411 (421)
                        .+|.++..+ ++|++|++++|......+..+..   ...+++|+.|++.++|-
T Consensus       255 --~lp~~l~~l-~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~  306 (332)
T 2ft3_A          255 --RVPAGLPDL-KLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPV  306 (332)
T ss_dssp             --BCCTTGGGC-TTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSS
T ss_pred             --ecChhhhcC-ccCCEEECCCCCCCccChhHccccccccccccccceEeecCcc
Confidence              567777777 99999999999865433333320   11368899999999973

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.89  E-value=7e-23  Score=187.63  Aligned_cols=244  Identities=17%  Similarity=0.101  Sum_probs=161.3

Q ss_pred             eEEEcCCCCCccCCcccCCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCC---ChhhhcccCCcEEEcc
Q 038338          128 IAISLPQRNIQELPERLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSL---PSSLGRLINLQTLCLD  204 (421)
Q Consensus       128 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l---p~~i~~l~~L~~L~l~  204 (421)
                      +.++..++.+..+|... .++++.|++++|.+  ..++...|.++++|++|++++|.++.+   |..+..+.+|++|+++
T Consensus        10 ~~l~c~~~~l~~ip~~~-~~~l~~L~L~~n~l--~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls   86 (306)
T 2z66_A           10 TEIRCNSKGLTSVPTGI-PSSATRLELESNKL--QSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS   86 (306)
T ss_dssp             TEEECCSSCCSSCCSCC-CTTCCEEECCSSCC--CCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC
T ss_pred             CEEEcCCCCcccCCCCC-CCCCCEEECCCCcc--CccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECC
Confidence            35666666666666533 25788888888875  467766667788888888888877653   5666777888888888


Q ss_pred             cccCCC-cccccCcCCCCEEEeeCCCCcccch--hhcCCCCCCEEeccCCcCCcccchhhhcCCCCCcEEEcccCCCCCc
Q 038338          205 WCQLED-VAAIGQLKKLEILNLADSNIEQLPL--EIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNSFSGWE  281 (421)
Q Consensus       205 ~~~~~~-~~~~~~l~~L~~L~l~~~~l~~lp~--~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~  281 (421)
                      +|.+.. |..+..+++|++|++++|++..++.  .+..+++|++|++++|.... .+...++.+++|++|++++|.+...
T Consensus        87 ~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~  165 (306)
T 2z66_A           87 FNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV-AFNGIFNGLSSLEVLKMAGNSFQEN  165 (306)
T ss_dssp             SCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEE-CSTTTTTTCTTCCEEECTTCEEGGG
T ss_pred             CCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCc-cchhhcccCcCCCEEECCCCccccc
Confidence            888777 7778888888888888888776654  57778888888888864433 3333467788888888887766541


Q ss_pred             cccCCCCcChhhhcCCCCCCEEEEEecCccccC-Ccc-cccCCceEEEEEcCCccchhhhhhchhhhceeEEEcCCcccc
Q 038338          282 KVEGGSNASLVELKRLTKLTTLEIEVRDAEILL-PDF-VSVELQRYRIRIGDKLEYEIDQLLVKSEALRLMMLKGLEKVS  359 (421)
Q Consensus       282 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~  359 (421)
                      ..       ...+..+++|++|++++|.+..++ ..+ .+++|+.|+++.+ ......+..+..+++|+.|++++|.+..
T Consensus       166 ~~-------~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~  237 (306)
T 2z66_A          166 FL-------PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN-NFFSLDTFPYKCLNSLQVLDYSLNHIMT  237 (306)
T ss_dssp             EE-------CSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-CCSBCCSGGGTTCTTCCEEECTTSCCCB
T ss_pred             cc-------hhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCC-ccCccChhhccCcccCCEeECCCCCCcc
Confidence            11       145667778888888877776553 333 3366666666532 2222223345667777777777776432


Q ss_pred             cccchhHHHHhhhcccEEEeccccCc
Q 038338          360 ILQENDGTKMLLQRTEDLWLVKLEGV  385 (421)
Q Consensus       360 ~~~~~~~~~~~~~~L~~L~l~~~~~~  385 (421)
                        ..+..+..+.++|++|++++|+..
T Consensus       238 --~~~~~~~~~~~~L~~L~L~~N~~~  261 (306)
T 2z66_A          238 --SKKQELQHFPSSLAFLNLTQNDFA  261 (306)
T ss_dssp             --CSSSSCCCCCTTCCEEECTTCCEE
T ss_pred             --cCHHHHHhhhccCCEEEccCCCee
Confidence              223334444236777777777654

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.89  E-value=1.7e-22  Score=188.79  Aligned_cols=259  Identities=17%  Similarity=0.176  Sum_probs=203.8

Q ss_pred             CcccccccCccCCCeEEEcCCCCCccCCc--ccCCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCCChh
Q 038338          114 DLEKKMEETIRKDPIAISLPQRNIQELPE--RLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPSS  191 (421)
Q Consensus       114 ~~~~~~~~~~~~~l~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~  191 (421)
                      .+..+|. ...+++++|+++++.+..++.  ..++++|+.|++++|.+  ..++...|.++++|++|++++|.++.+|..
T Consensus        42 ~l~~iP~-~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l--~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~  118 (353)
T 2z80_A           42 SLNSIPS-GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGI--NTIEEDSFSSLGSLEHLDLSYNYLSNLSSS  118 (353)
T ss_dssp             TCSSCCT-TCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCC--CEECTTTTTTCTTCCEEECCSSCCSSCCHH
T ss_pred             Ccccccc-cccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCcc--CccCHhhcCCCCCCCEEECCCCcCCcCCHh
Confidence            3444442 334689999999999977765  44899999999999986  455555568899999999999999998876


Q ss_pred             -hhcccCCcEEEcccccCCC-cc--cccCcCCCCEEEeeCC-CCcccc-hhhcCCCCCCEEeccCCcCCcccchhhhcCC
Q 038338          192 -LGRLINLQTLCLDWCQLED-VA--AIGQLKKLEILNLADS-NIEQLP-LEIGQLTGLRLLDLTNCWSLQVIAPNVISKL  265 (421)
Q Consensus       192 -i~~l~~L~~L~l~~~~~~~-~~--~~~~l~~L~~L~l~~~-~l~~lp-~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l  265 (421)
                       ++.+++|++|++++|.+.. |.  .++++++|++|++++| .+..++ ..+..+++|++|++++|...+..+. .++.+
T Consensus       119 ~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~l~~l  197 (353)
T 2z80_A          119 WFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPK-SLKSI  197 (353)
T ss_dssp             HHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTT-TTTTC
T ss_pred             HhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHH-HHhcc
Confidence             8899999999999999988 54  7899999999999999 577664 5689999999999999765444454 48999


Q ss_pred             CCCcEEEcccCCCCCccccCCCCcChhhhcCCCCCCEEEEEecCccccCCcc-----cccCCceEEEEEcCCcc---chh
Q 038338          266 SRLEELYMDNSFSGWEKVEGGSNASLVELKRLTKLTTLEIEVRDAEILLPDF-----VSVELQRYRIRIGDKLE---YEI  337 (421)
Q Consensus       266 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-----~~~~L~~L~l~~~~~~~---~~~  337 (421)
                      ++|++|++++|.+...+.        ..+..+++|+.|++++|.+..++...     ..+.++.+++.......   ..+
T Consensus       198 ~~L~~L~l~~n~l~~~~~--------~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l  269 (353)
T 2z80_A          198 QNVSHLILHMKQHILLLE--------IFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQV  269 (353)
T ss_dssp             SEEEEEEEECSCSTTHHH--------HHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHH
T ss_pred             ccCCeecCCCCccccchh--------hhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhh
Confidence            999999999998765543        44567899999999999987654331     23678888886433222   135


Q ss_pred             hhhhchhhhceeEEEcCCcccccccchhHH-HHhhhcccEEEeccccCcccc
Q 038338          338 DQLLVKSEALRLMMLKGLEKVSILQENDGT-KMLLQRTEDLWLVKLEGVQNV  388 (421)
Q Consensus       338 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~  388 (421)
                      |..+..+++|+.|++++|.+.   .+|.++ ..+ ++|++|++++|+.....
T Consensus       270 ~~~l~~l~~L~~L~Ls~N~l~---~i~~~~~~~l-~~L~~L~L~~N~~~~~~  317 (353)
T 2z80_A          270 MKLLNQISGLLELEFSRNQLK---SVPDGIFDRL-TSLQKIWLHTNPWDCSC  317 (353)
T ss_dssp             HHHHHTCTTCCEEECCSSCCC---CCCTTTTTTC-TTCCEEECCSSCBCCCH
T ss_pred             HHHHhcccCCCEEECCCCCCC---ccCHHHHhcC-CCCCEEEeeCCCccCcC
Confidence            777889999999999998854   455554 566 99999999999876443

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.89  E-value=6.8e-23  Score=204.06  Aligned_cols=143  Identities=10%  Similarity=-0.018  Sum_probs=76.7

Q ss_pred             hcCCCCCcEEEcccCCCCCccccC-----------CCC-----cChhhhcCCCCCCEEEEEecCcccc-CCcc-cccCCc
Q 038338          262 ISKLSRLEELYMDNSFSGWEKVEG-----------GSN-----ASLVELKRLTKLTTLEIEVRDAEIL-LPDF-VSVELQ  323 (421)
Q Consensus       262 l~~l~~L~~L~l~~~~~~~~~~~~-----------~~~-----~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~-~~~~L~  323 (421)
                      +..+++|++|++++|.+...+...           ...     .....+..+++|+.|++++|.+... |..+ .+++|+
T Consensus       369 ~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  448 (570)
T 2z63_A          369 DFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLE  448 (570)
T ss_dssp             HHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCC
T ss_pred             ccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCc
Confidence            667888888888887665443310           000     0012344555566666655555432 2222 346666


Q ss_pred             eEEEEEcCCccchhhhhhchhhhceeEEEcCCcccccccchhHHHHhhhcccEEEeccccCcccccccccccCCCCCccE
Q 038338          324 RYRIRIGDKLEYEIDQLLVKSEALRLMMLKGLEKVSILQENDGTKMLLQRTEDLWLVKLEGVQNVVHELDDGEGFPRLKH  403 (421)
Q Consensus       324 ~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~  403 (421)
                      .|++..+......+|..+..+++|+.|++++|.+.  ...+.++..+ ++|++|++++|......+..+.   ++++|+.
T Consensus       449 ~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~--~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~---~l~~L~~  522 (570)
T 2z63_A          449 VLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE--QLSPTAFNSL-SSLQVLNMASNQLKSVPDGIFD---RLTSLQK  522 (570)
T ss_dssp             EEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCC--EECTTTTTTC-TTCCEEECCSSCCSCCCTTTTT---TCTTCCE
T ss_pred             EEECcCCcCccccchhhhhcccCCCEEECCCCccc--cCChhhhhcc-cCCCEEeCCCCcCCCCCHHHhh---cccCCcE
Confidence            66664332222234555666666666666666532  2224445555 6677777766654443333333   6677777


Q ss_pred             EEEeecC
Q 038338          404 LHVESCY  410 (421)
Q Consensus       404 L~i~~c~  410 (421)
                      |++++|+
T Consensus       523 L~l~~N~  529 (570)
T 2z63_A          523 IWLHTNP  529 (570)
T ss_dssp             EECCSSC
T ss_pred             EEecCCc
Confidence            7776654

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.89  E-value=1.4e-22  Score=185.61  Aligned_cols=258  Identities=16%  Similarity=0.104  Sum_probs=199.4

Q ss_pred             ccCCCeEEEcCCCCCccCCcc--cCCCCccEEEeeecCCCC-cccChHHhccCCCccEEEccCCCCCCCChhhhcccCCc
Q 038338          123 IRKDPIAISLPQRNIQELPER--LQCPNLQLFLLFRQGYGP-VQISDLFFEGTEELKVLSLIGIHFSSLPSSLGRLINLQ  199 (421)
Q Consensus       123 ~~~~l~~l~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~-~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~  199 (421)
                      ..+++++|+++++.+..++..  .++++|+.|++++|.+.. +..+..+ ..+++|++|++++|.+..+|..+..+++|+
T Consensus        26 ~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~  104 (306)
T 2z66_A           26 IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSD-FGTTSLKYLDLSFNGVITMSSNFLGLEQLE  104 (306)
T ss_dssp             CCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHH-HSCSCCCEEECCSCSEEEEEEEEETCTTCC
T ss_pred             CCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCccccc-ccccccCEEECCCCccccChhhcCCCCCCC
Confidence            357899999999999888864  389999999999998611 2224444 579999999999999999998899999999


Q ss_pred             EEEcccccCCC-c--ccccCcCCCCEEEeeCCCCccc-chhhcCCCCCCEEeccCCcCCc-ccchhhhcCCCCCcEEEcc
Q 038338          200 TLCLDWCQLED-V--AAIGQLKKLEILNLADSNIEQL-PLEIGQLTGLRLLDLTNCWSLQ-VIAPNVISKLSRLEELYMD  274 (421)
Q Consensus       200 ~L~l~~~~~~~-~--~~~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~l~~~~~~~-~~~~~~l~~l~~L~~L~l~  274 (421)
                      +|++++|.+.. +  ..+.++++|++|++++|.+... |..+..+++|++|++++|...+ ..|. .+..+++|++|+++
T Consensus       105 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~~l~~L~~L~Ls  183 (306)
T 2z66_A          105 HLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD-IFTELRNLTFLDLS  183 (306)
T ss_dssp             EEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECS-CCTTCTTCCEEECT
T ss_pred             EEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchh-HHhhCcCCCEEECC
Confidence            99999999887 4  5789999999999999998854 5568899999999999976554 2454 48899999999999


Q ss_pred             cCCCCCccccCCCCcChhhhcCCCCCCEEEEEecCccccCCcc--cccCCceEEEEEcCCccchhhhhhchhh-hceeEE
Q 038338          275 NSFSGWEKVEGGSNASLVELKRLTKLTTLEIEVRDAEILLPDF--VSVELQRYRIRIGDKLEYEIDQLLVKSE-ALRLMM  351 (421)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~l~-~L~~L~  351 (421)
                      +|.+....+        ..++.+++|+.|++++|.+..++...  .+++|+.|+++. +......+..+..++ +|+.|+
T Consensus       184 ~n~l~~~~~--------~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~~~~~L~~L~  254 (306)
T 2z66_A          184 QCQLEQLSP--------TAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSL-NHIMTSKKQELQHFPSSLAFLN  254 (306)
T ss_dssp             TSCCCEECT--------TTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTT-SCCCBCSSSSCCCCCTTCCEEE
T ss_pred             CCCcCCcCH--------HHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCC-CCCcccCHHHHHhhhccCCEEE
Confidence            998877654        56888999999999999998777643  459999999974 445545667788884 999999


Q ss_pred             EcCCcccccccchhHHHHhhhcccEEEeccccCcccccccc
Q 038338          352 LKGLEKVSILQENDGTKMLLQRTEDLWLVKLEGVQNVVHEL  392 (421)
Q Consensus       352 l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~  392 (421)
                      +++|.+............+ ...+.+.+..+...-..|..+
T Consensus       255 L~~N~~~~~c~~~~~~~~l-~~~~~~~~~~~~~~C~~p~~~  294 (306)
T 2z66_A          255 LTQNDFACTCEHQSFLQWI-KDQRQLLVEVERMECATPSDK  294 (306)
T ss_dssp             CTTCCEECSGGGHHHHHHH-HHTGGGBSCGGGCBEEESGGG
T ss_pred             ccCCCeecccChHHHHHHH-HhhhhhhccccccccCCchhh
Confidence            9999875443332222222 445555544433333334433

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.89  E-value=2.4e-22  Score=194.24  Aligned_cols=242  Identities=21%  Similarity=0.164  Sum_probs=175.5

Q ss_pred             CCeEEEcCCCCCccCCcccCCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCCC-hhhhcccCCcEEEcc
Q 038338          126 DPIAISLPQRNIQELPERLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLP-SSLGRLINLQTLCLD  204 (421)
Q Consensus       126 ~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp-~~i~~l~~L~~L~l~  204 (421)
                      +.+.++..+..+..+|.... ++++.|++++|.+  ..++...|.++++|++|++++|.+..++ ..+..+.+|++|+++
T Consensus        55 ~~~~v~c~~~~l~~iP~~~~-~~l~~L~L~~n~i--~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~  131 (452)
T 3zyi_A           55 QFSKVVCTRRGLSEVPQGIP-SNTRYLNLMENNI--QMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF  131 (452)
T ss_dssp             SSCEEECCSSCCSSCCSCCC-TTCSEEECCSSCC--CEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CCcEEEECCCCcCccCCCCC-CCccEEECcCCcC--ceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence            35677777777777775432 6889999999986  4454444688999999999999888754 668889999999999


Q ss_pred             cccCCC-c-ccccCcCCCCEEEeeCCCCcccch-hhcCCCCCCEEeccCCcCCcccchhhhcCCCCCcEEEcccCCCCCc
Q 038338          205 WCQLED-V-AAIGQLKKLEILNLADSNIEQLPL-EIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNSFSGWE  281 (421)
Q Consensus       205 ~~~~~~-~-~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~  281 (421)
                      +|.++. + ..+..+++|++|++++|++..+|. .+..+++|++|++++|+.++.++...+..+++|++|++++|.+...
T Consensus       132 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~  211 (452)
T 3zyi_A          132 DNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM  211 (452)
T ss_dssp             SSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC
T ss_pred             CCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc
Confidence            999888 4 558889999999999999987776 4788999999999988888888877688899999999998877654


Q ss_pred             cccCCCCcChhhhcCCCCCCEEEEEecCccccCCc-c-cccCCceEEEEEcCCccchhhhhhchhhhceeEEEcCCcccc
Q 038338          282 KVEGGSNASLVELKRLTKLTTLEIEVRDAEILLPD-F-VSVELQRYRIRIGDKLEYEIDQLLVKSEALRLMMLKGLEKVS  359 (421)
Q Consensus       282 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~  359 (421)
                      +          .+..+++|+.|++++|.+..++.. + .+++|+.|++. .+......+..+..+++|+.|++++|.+..
T Consensus       212 ~----------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~-~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~  280 (452)
T 3zyi_A          212 P----------NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVM-NSQVSLIERNAFDGLASLVELNLAHNNLSS  280 (452)
T ss_dssp             C----------CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECT-TSCCCEECTTTTTTCTTCCEEECCSSCCSC
T ss_pred             c----------cccccccccEEECcCCcCcccCcccccCccCCCEEEeC-CCcCceECHHHhcCCCCCCEEECCCCcCCc
Confidence            2          367788888888888887665433 3 34667776665 233333344556666667777776665321


Q ss_pred             cccchhHHHHhhhcccEEEeccccC
Q 038338          360 ILQENDGTKMLLQRTEDLWLVKLEG  384 (421)
Q Consensus       360 ~~~~~~~~~~~~~~L~~L~l~~~~~  384 (421)
                        ..+..+..+ ++|++|++++|+.
T Consensus       281 --~~~~~~~~l-~~L~~L~L~~Np~  302 (452)
T 3zyi_A          281 --LPHDLFTPL-RYLVELHLHHNPW  302 (452)
T ss_dssp             --CCTTSSTTC-TTCCEEECCSSCE
T ss_pred             --cChHHhccc-cCCCEEEccCCCc
Confidence              112223333 6666666666653

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.89  E-value=2.6e-22  Score=193.22  Aligned_cols=218  Identities=19%  Similarity=0.251  Sum_probs=100.6

Q ss_pred             CCCeEEEcCCCCCccCCc--ccCCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCCCh-hhhcccCCcEE
Q 038338          125 KDPIAISLPQRNIQELPE--RLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPS-SLGRLINLQTL  201 (421)
Q Consensus       125 ~~l~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L  201 (421)
                      ++++.|++++|.+..++.  +.++++|+.|++++|.+  ..++...|.++++|++|++++|.++.+|. .+..+++|++|
T Consensus        64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i--~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  141 (440)
T 3zyj_A           64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHI--RTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKEL  141 (440)
T ss_dssp             TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCC--CEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEE
T ss_pred             CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcC--CccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCcee
Confidence            445555555555533331  12455555555555543  33333334455555555555555554433 34455555555


Q ss_pred             EcccccCCC--cccccCcCCCCEEEeeCC-CCcccch-hhcCCCCCCEEeccCCcCCcccchhhhcCCCCCcEEEcccCC
Q 038338          202 CLDWCQLED--VAAIGQLKKLEILNLADS-NIEQLPL-EIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNSF  277 (421)
Q Consensus       202 ~l~~~~~~~--~~~~~~l~~L~~L~l~~~-~l~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~  277 (421)
                      ++++|.+..  +..+.++++|++|++++| .+..++. .+..+++|++|++++| .+..+|.  +..+++|++|++++|.
T Consensus       142 ~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~--~~~l~~L~~L~Ls~N~  218 (440)
T 3zyj_A          142 WLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC-NLREIPN--LTPLIKLDELDLSGNH  218 (440)
T ss_dssp             ECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTS-CCSSCCC--CTTCSSCCEEECTTSC
T ss_pred             eCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCC-cCccccc--cCCCcccCEEECCCCc
Confidence            555555444  234455555555555543 3333333 2444555555555553 2334443  4455555555555554


Q ss_pred             CCCccccCCCCcChhhhcCCCCCCEEEEEecCccccCCcc--cccCCceEEEEEcCCccchhhhhhchhhhceeEEEcCC
Q 038338          278 SGWEKVEGGSNASLVELKRLTKLTTLEIEVRDAEILLPDF--VSVELQRYRIRIGDKLEYEIDQLLVKSEALRLMMLKGL  355 (421)
Q Consensus       278 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~  355 (421)
                      +....+        ..+..+++|+.|++++|.+..++...  .+++|+.|+++. +.+....+..+..+++|+.|++++|
T Consensus       219 l~~~~~--------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N  289 (440)
T 3zyj_A          219 LSAIRP--------GSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAH-NNLTLLPHDLFTPLHHLERIHLHHN  289 (440)
T ss_dssp             CCEECT--------TTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTT-SCCCCCCTTTTSSCTTCCEEECCSS
T ss_pred             cCccCh--------hhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCC-CCCCccChhHhccccCCCEEEcCCC
Confidence            443332        33445555555555555544333221  234555555542 2222222233444555555555554


Q ss_pred             c
Q 038338          356 E  356 (421)
Q Consensus       356 ~  356 (421)
                      .
T Consensus       290 p  290 (440)
T 3zyj_A          290 P  290 (440)
T ss_dssp             C
T ss_pred             C
Confidence            4

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.89  E-value=2.2e-22  Score=194.09  Aligned_cols=184  Identities=16%  Similarity=0.088  Sum_probs=105.9

Q ss_pred             ccccCccCCCeEEEcCCCCCccCCcccCCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCCChhhhcccC
Q 038338          118 KMEETIRKDPIAISLPQRNIQELPERLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPSSLGRLIN  197 (421)
Q Consensus       118 ~~~~~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~  197 (421)
                      .+.+..++++++|++++|.+..++ ...+++|+.|++++|.+  ..++   ++.+++|++|++++|.++.+|  ++.+++
T Consensus        57 ~~~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls~N~l--~~~~---~~~l~~L~~L~L~~N~l~~l~--~~~l~~  128 (457)
T 3bz5_A           57 MTGIEKLTGLTKLICTSNNITTLD-LSQNTNLTYLACDSNKL--TNLD---VTPLTKLTYLNCDTNKLTKLD--VSQNPL  128 (457)
T ss_dssp             CTTGGGCTTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCC--SCCC---CTTCTTCCEEECCSSCCSCCC--CTTCTT
T ss_pred             ChhhcccCCCCEEEccCCcCCeEc-cccCCCCCEEECcCCCC--ceee---cCCCCcCCEEECCCCcCCeec--CCCCCc
Confidence            345566677777777777776664 44677777777777765  2333   356777777777777776664  666777


Q ss_pred             CcEEEcccccCCCcccccCcCCCCEEEeeCC-CCcccchhhcCCCCCCEEeccCCcCCcccchhhhcCCCCCcEEEcccC
Q 038338          198 LQTLCLDWCQLEDVAAIGQLKKLEILNLADS-NIEQLPLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNS  276 (421)
Q Consensus       198 L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~-~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~  276 (421)
                      |++|++++|.++.. .++++++|++|++++| .+..+  .++.+++|++|++++|. +..++   ++.+++|+.|++++|
T Consensus       129 L~~L~l~~N~l~~l-~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~-l~~l~---l~~l~~L~~L~l~~N  201 (457)
T 3bz5_A          129 LTYLNCARNTLTEI-DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNK-ITELD---VSQNKLLNRLNCDTN  201 (457)
T ss_dssp             CCEEECTTSCCSCC-CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSC-CCCCC---CTTCTTCCEEECCSS
T ss_pred             CCEEECCCCcccee-ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCc-cceec---cccCCCCCEEECcCC
Confidence            77777777776662 1555666666666665 33333  24555666666665542 33333   345555555555555


Q ss_pred             CCCCccccCCCCcChhhhcCCCCCCEEEEEecCccccCCcccccCCceEEEE
Q 038338          277 FSGWEKVEGGSNASLVELKRLTKLTTLEIEVRDAEILLPDFVSVELQRYRIR  328 (421)
Q Consensus       277 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~  328 (421)
                      .+...           .++.+++|+.|++++|.+..+| ...+++|+.|+++
T Consensus       202 ~l~~~-----------~l~~l~~L~~L~Ls~N~l~~ip-~~~l~~L~~L~l~  241 (457)
T 3bz5_A          202 NITKL-----------DLNQNIQLTFLDCSSNKLTEID-VTPLTQLTYFDCS  241 (457)
T ss_dssp             CCSCC-----------CCTTCTTCSEEECCSSCCSCCC-CTTCTTCSEEECC
T ss_pred             cCCee-----------ccccCCCCCEEECcCCcccccC-ccccCCCCEEEee
Confidence            44432           1334445555555555544444 1133445554443

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.89  E-value=2.7e-22  Score=193.81  Aligned_cols=224  Identities=21%  Similarity=0.223  Sum_probs=184.5

Q ss_pred             ccCCCeEEEcCCCCCccCCc--ccCCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCCChh-hhcccCCc
Q 038338          123 IRKDPIAISLPQRNIQELPE--RLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPSS-LGRLINLQ  199 (421)
Q Consensus       123 ~~~~l~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~-i~~l~~L~  199 (421)
                      ..++++.|++++|.+..++.  +.++++|+.|++++|.+  ..++...|.++++|++|++++|.++.+|.. +..+++|+
T Consensus        73 ~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i--~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  150 (452)
T 3zyi_A           73 IPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSI--RQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLR  150 (452)
T ss_dssp             CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC--CEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCC
T ss_pred             CCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCcc--CCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCC
Confidence            45789999999999966643  33899999999999986  555555568899999999999999987664 88899999


Q ss_pred             EEEcccccCCC--cccccCcCCCCEEEeeCC-CCcccchh-hcCCCCCCEEeccCCcCCcccchhhhcCCCCCcEEEccc
Q 038338          200 TLCLDWCQLED--VAAIGQLKKLEILNLADS-NIEQLPLE-IGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDN  275 (421)
Q Consensus       200 ~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~-~l~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~  275 (421)
                      +|++++|.+..  +..+.++++|++|++++| .+..++.. +..+++|++|++++| .+..+|.  +..+++|++|++++
T Consensus       151 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~--~~~l~~L~~L~Ls~  227 (452)
T 3zyi_A          151 ELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMC-NIKDMPN--LTPLVGLEELEMSG  227 (452)
T ss_dssp             EEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTS-CCSSCCC--CTTCTTCCEEECTT
T ss_pred             EEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCC-ccccccc--ccccccccEEECcC
Confidence            99999999988  457899999999999995 67777664 889999999999996 4556665  78999999999999


Q ss_pred             CCCCCccccCCCCcChhhhcCCCCCCEEEEEecCccccCCc-c-cccCCceEEEEEcCCccchhhhhhchhhhceeEEEc
Q 038338          276 SFSGWEKVEGGSNASLVELKRLTKLTTLEIEVRDAEILLPD-F-VSVELQRYRIRIGDKLEYEIDQLLVKSEALRLMMLK  353 (421)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~  353 (421)
                      |.+....+        ..+.++++|+.|++++|.+..++.. + .+++|+.|+++.+ .+....+..+..+++|+.|+++
T Consensus       228 N~l~~~~~--------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~  298 (452)
T 3zyi_A          228 NHFPEIRP--------GSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHN-NLSSLPHDLFTPLRYLVELHLH  298 (452)
T ss_dssp             SCCSEECG--------GGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTSSTTCTTCCEEECC
T ss_pred             CcCcccCc--------ccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCC-cCCccChHHhccccCCCEEEcc
Confidence            99887655        6789999999999999998766544 3 4599999999844 4454445567889999999999


Q ss_pred             CCccccc
Q 038338          354 GLEKVSI  360 (421)
Q Consensus       354 ~~~~~~~  360 (421)
                      +|.+...
T Consensus       299 ~Np~~Cd  305 (452)
T 3zyi_A          299 HNPWNCD  305 (452)
T ss_dssp             SSCEECS
T ss_pred             CCCcCCC
Confidence            9886433

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.89  E-value=2.3e-22  Score=204.51  Aligned_cols=275  Identities=17%  Similarity=0.099  Sum_probs=205.6

Q ss_pred             cCCCeEEEcCCCCCccCCc--ccCCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCCCh-hhhcccCCcE
Q 038338          124 RKDPIAISLPQRNIQELPE--RLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPS-SLGRLINLQT  200 (421)
Q Consensus       124 ~~~l~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L~~  200 (421)
                      .+++++|+++++.+..++.  ..++++|++|++++|.+  ..++...|.++++|++|++++|.++.+|. .++.+.+|++
T Consensus        24 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l--~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~  101 (680)
T 1ziw_A           24 PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTI--SKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTE  101 (680)
T ss_dssp             CTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCC--CCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSE
T ss_pred             CCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCcc--CccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCE
Confidence            4789999999999977775  34899999999999986  44544556889999999999999999886 5899999999


Q ss_pred             EEcccccCCC--cccccCcCCCCEEEeeCCCCccc-chhhcCCCCCCEEeccCCcCCcccchhhhc--CCCCCcEEEccc
Q 038338          201 LCLDWCQLED--VAAIGQLKKLEILNLADSNIEQL-PLEIGQLTGLRLLDLTNCWSLQVIAPNVIS--KLSRLEELYMDN  275 (421)
Q Consensus       201 L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~l~~~~~~~~~~~~~l~--~l~~L~~L~l~~  275 (421)
                      |++++|.+..  +..++++++|++|++++|.+... |..++.+++|++|++++|.. ..++...++  .+++|++|++++
T Consensus       102 L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~~~~~~L~~L~L~~  180 (680)
T 1ziw_A          102 LHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKI-QALKSEELDIFANSSLKKLELSS  180 (680)
T ss_dssp             EECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCC-CCBCHHHHGGGTTCEESEEECTT
T ss_pred             EECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcc-cccCHHHhhccccccccEEECCC
Confidence            9999999888  47899999999999999998855 45688999999999999754 444443343  568999999999


Q ss_pred             CCCCCccccCCCCcChhhhc---------------------------CCCCCCEEEEEecCccccCC-cc-cc--cCCce
Q 038338          276 SFSGWEKVEGGSNASLVELK---------------------------RLTKLTTLEIEVRDAEILLP-DF-VS--VELQR  324 (421)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~l~---------------------------~l~~L~~L~l~~~~~~~~~~-~~-~~--~~L~~  324 (421)
                      |.+....+.        .++                           ..++|+.|++++|.+..++. .+ .+  ++|+.
T Consensus       181 n~l~~~~~~--------~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~  252 (680)
T 1ziw_A          181 NQIKEFSPG--------CFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTM  252 (680)
T ss_dssp             CCCCCBCTT--------GGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCE
T ss_pred             CcccccChh--------hhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCE
Confidence            987765441        122                           23678888888887764433 33 22  45999


Q ss_pred             EEEEEcCCccchhhhhhchhhhceeEEEcCCcccccccchhHHHHhhhcccEEEeccccCcc-----cccc--cccccCC
Q 038338          325 YRIRIGDKLEYEIDQLLVKSEALRLMMLKGLEKVSILQENDGTKMLLQRTEDLWLVKLEGVQ-----NVVH--ELDDGEG  397 (421)
Q Consensus       325 L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-----~~~~--~~~~~~~  397 (421)
                      |+++.+ ......+..++.+++|++|++++|.+.  ...+..+..+ ++|++|++.++....     .+|.  ... ...
T Consensus       253 L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~--~~~~~~~~~l-~~L~~L~L~~~~~~~~~~~~~lp~i~~~~-~~~  327 (680)
T 1ziw_A          253 LDLSYN-NLNVVGNDSFAWLPQLEYFFLEYNNIQ--HLFSHSLHGL-FNVRYLNLKRSFTKQSISLASLPKIDDFS-FQW  327 (680)
T ss_dssp             EECTTS-CCCEECTTTTTTCTTCCEEECCSCCBS--EECTTTTTTC-TTCCEEECTTCBCCC------CCEECTTT-TTT
T ss_pred             EECCCC-CcCccCcccccCcccccEeeCCCCccC--ccChhhhcCC-CCccEEeccchhhhcccccccccccChhh-ccc
Confidence            998743 344455667888999999999998743  3345566776 899999998765332     2221  011 337


Q ss_pred             CCCccEEEEeecCceeee
Q 038338          398 FPRLKHLHVESCYEIVHI  415 (421)
Q Consensus       398 ~~~L~~L~i~~c~~L~~l  415 (421)
                      +++|+.|++++|. +..+
T Consensus       328 l~~L~~L~l~~n~-l~~~  344 (680)
T 1ziw_A          328 LKCLEHLNMEDND-IPGI  344 (680)
T ss_dssp             CTTCCEEECCSCC-BCCC
T ss_pred             CCCCCEEECCCCc-cCCC
Confidence            8999999999884 5444

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.88  E-value=2.8e-22  Score=198.72  Aligned_cols=188  Identities=19%  Similarity=0.222  Sum_probs=151.2

Q ss_pred             CcccccccCccCCCeEEEcCCCCCccCC-c-ccCCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCCChh
Q 038338          114 DLEKKMEETIRKDPIAISLPQRNIQELP-E-RLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPSS  191 (421)
Q Consensus       114 ~~~~~~~~~~~~~l~~l~l~~~~~~~l~-~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~  191 (421)
                      .+..+|. ...+++++|++++|.+..++ . ..++++|++|++++|.+  ..++...|.++++|++|++++|.+..+++.
T Consensus        16 ~l~~ip~-~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i--~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~   92 (549)
T 2z81_A           16 SFTSIPS-GLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRI--NTIEGDAFYSLGSLEHLDLSDNHLSSLSSS   92 (549)
T ss_dssp             CCSSCCS-CCCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCC--CEECTTTTTTCTTCCEEECTTSCCCSCCHH
T ss_pred             ccccccc-cCCCCccEEECcCCccCccChhhhhcCCcccEEECCCCCc--CccChhhccccccCCEEECCCCccCccCHH
Confidence            3444443 23478999999999996654 3 34899999999999986  455555568899999999999999987665


Q ss_pred             -hhcccCCcEEEcccccCCC---cccccCcCCCCEEEeeCCC-Ccccc-hhhcCCCCCCEEeccCCcCCcccchhhhcCC
Q 038338          192 -LGRLINLQTLCLDWCQLED---VAAIGQLKKLEILNLADSN-IEQLP-LEIGQLTGLRLLDLTNCWSLQVIAPNVISKL  265 (421)
Q Consensus       192 -i~~l~~L~~L~l~~~~~~~---~~~~~~l~~L~~L~l~~~~-l~~lp-~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l  265 (421)
                       ++.+++|++|++++|.+..   |..++++++|++|++++|. +..+| ..+..+++|++|++++|...+..|.. ++.+
T Consensus        93 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-l~~l  171 (549)
T 2z81_A           93 WFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQS-LKSI  171 (549)
T ss_dssp             HHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTT-TTTC
T ss_pred             HhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhh-hhcc
Confidence             9999999999999999874   6789999999999999997 66776 46899999999999997665556654 8899


Q ss_pred             CCCcEEEcccCCCCCccccCCCCcChhhhcCCCCCCEEEEEecCcccc
Q 038338          266 SRLEELYMDNSFSGWEKVEGGSNASLVELKRLTKLTTLEIEVRDAEIL  313 (421)
Q Consensus       266 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~  313 (421)
                      ++|++|++++|.....+.        ..++.+++|+.|++++|.+..+
T Consensus       172 ~~L~~L~l~~n~~~~~~~--------~~~~~l~~L~~L~L~~n~l~~~  211 (549)
T 2z81_A          172 RDIHHLTLHLSESAFLLE--------IFADILSSVRYLELRDTNLARF  211 (549)
T ss_dssp             SEEEEEEEECSBSTTHHH--------HHHHSTTTBSEEEEESCBCTTC
T ss_pred             ccCceEecccCcccccch--------hhHhhcccccEEEccCCccccc
Confidence            999999999987654433        3346789999999999887654

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.88  E-value=4.3e-22  Score=191.71  Aligned_cols=242  Identities=22%  Similarity=0.219  Sum_probs=188.5

Q ss_pred             CCeEEEcCCCCCccCCcccCCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCCC-hhhhcccCCcEEEcc
Q 038338          126 DPIAISLPQRNIQELPERLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLP-SSLGRLINLQTLCLD  204 (421)
Q Consensus       126 ~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp-~~i~~l~~L~~L~l~  204 (421)
                      ..+.++..+..+..+|.... ++++.|++++|.+  ..++...|.++++|++|++++|.+..++ ..+..+.+|++|+++
T Consensus        44 ~~~~v~c~~~~l~~iP~~~~-~~l~~L~L~~n~i--~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~  120 (440)
T 3zyj_A           44 QFSKVICVRKNLREVPDGIS-TNTRLLNLHENQI--QIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF  120 (440)
T ss_dssp             TSCEEECCSCCCSSCCSCCC-TTCSEEECCSCCC--CEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred             CCCEEEeCCCCcCcCCCCCC-CCCcEEEccCCcC--CeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence            35678888888888886543 7899999999986  5555555689999999999999998864 568899999999999


Q ss_pred             cccCCC-c-ccccCcCCCCEEEeeCCCCcccch-hhcCCCCCCEEeccCCcCCcccchhhhcCCCCCcEEEcccCCCCCc
Q 038338          205 WCQLED-V-AAIGQLKKLEILNLADSNIEQLPL-EIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNSFSGWE  281 (421)
Q Consensus       205 ~~~~~~-~-~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~  281 (421)
                      +|.++. + ..+..+++|++|++++|.+..+|. .+..+++|++|++++|+.++.++...+..+++|++|++++|.+...
T Consensus       121 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~  200 (440)
T 3zyj_A          121 DNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI  200 (440)
T ss_dssp             SSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSC
T ss_pred             CCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccc
Confidence            999888 4 578999999999999999998876 5788999999999998888888887788999999999999987754


Q ss_pred             cccCCCCcChhhhcCCCCCCEEEEEecCccccCC-cc-cccCCceEEEEEcCCccchhhhhhchhhhceeEEEcCCcccc
Q 038338          282 KVEGGSNASLVELKRLTKLTTLEIEVRDAEILLP-DF-VSVELQRYRIRIGDKLEYEIDQLLVKSEALRLMMLKGLEKVS  359 (421)
Q Consensus       282 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~  359 (421)
                      +          .+..+++|+.|++++|.+..++. .+ .+++|+.|++. .+.+....+..+..+++|+.|++++|.+..
T Consensus       201 ~----------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~-~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~  269 (440)
T 3zyj_A          201 P----------NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMI-QSQIQVIERNAFDNLQSLVEINLAHNNLTL  269 (440)
T ss_dssp             C----------CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECT-TCCCCEECTTSSTTCTTCCEEECTTSCCCC
T ss_pred             c----------ccCCCcccCEEECCCCccCccChhhhccCccCCEEECC-CCceeEEChhhhcCCCCCCEEECCCCCCCc
Confidence            3          37788899999999998876643 33 44788888876 334444445667777888888888877432


Q ss_pred             cccchhHHHHhhhcccEEEeccccC
Q 038338          360 ILQENDGTKMLLQRTEDLWLVKLEG  384 (421)
Q Consensus       360 ~~~~~~~~~~~~~~L~~L~l~~~~~  384 (421)
                        ..+..+..+ ++|+.|++++|+.
T Consensus       270 --~~~~~~~~l-~~L~~L~L~~Np~  291 (440)
T 3zyj_A          270 --LPHDLFTPL-HHLERIHLHHNPW  291 (440)
T ss_dssp             --CCTTTTSSC-TTCCEEECCSSCE
T ss_pred             --cChhHhccc-cCCCEEEcCCCCc
Confidence              122334444 7788888877764

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.88  E-value=6.6e-22  Score=205.37  Aligned_cols=277  Identities=15%  Similarity=0.078  Sum_probs=198.3

Q ss_pred             eEEEcCCCCCccCCcccCCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCC-CCC-ChhhhcccCCcEEEccc
Q 038338          128 IAISLPQRNIQELPERLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHF-SSL-PSSLGRLINLQTLCLDW  205 (421)
Q Consensus       128 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~-~~l-p~~i~~l~~L~~L~l~~  205 (421)
                      +.++.+++.+..+|.  -.++++.|++++|.+  ..+....|.++++|++|++++|.. ..+ |..++.+++|++|++++
T Consensus         7 ~~~dcs~~~L~~vP~--lp~~l~~LdLs~N~i--~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~   82 (844)
T 3j0a_A            7 RIAFYRFCNLTQVPQ--VLNTTERLLLSFNYI--RTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGS   82 (844)
T ss_dssp             EEEEESCCCSSCCCS--SCTTCCEEEEESCCC--CEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTT
T ss_pred             eEEEccCCCCCCCCC--CCCCcCEEECCCCcC--CccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCC
Confidence            567778888888987  568999999999986  444434468999999999999954 445 77899999999999999


Q ss_pred             ccCCC--cccccCcCCCCEEEeeCCCCcc-cchh--hcCCCCCCEEeccCCcCCcccchhhhcCCCCCcEEEcccCCCCC
Q 038338          206 CQLED--VAAIGQLKKLEILNLADSNIEQ-LPLE--IGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNSFSGW  280 (421)
Q Consensus       206 ~~~~~--~~~~~~l~~L~~L~l~~~~l~~-lp~~--~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  280 (421)
                      |.+..  |..++++++|++|++++|.+.. +|..  ++++++|++|++++|...+..+...++++++|++|++++|.+..
T Consensus        83 N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~  162 (844)
T 3j0a_A           83 SKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFL  162 (844)
T ss_dssp             CCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCC
T ss_pred             CcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCe
Confidence            99987  7899999999999999999984 5655  89999999999999866554444458999999999999998765


Q ss_pred             ccccC--------------CC----CcChhhhcCCC------CCCEEEEEecCcc-ccCCcc------------------
Q 038338          281 EKVEG--------------GS----NASLVELKRLT------KLTTLEIEVRDAE-ILLPDF------------------  317 (421)
Q Consensus       281 ~~~~~--------------~~----~~~~~~l~~l~------~L~~L~l~~~~~~-~~~~~~------------------  317 (421)
                      ..+..              ..    ......++.+.      .|+.|++++|.+. .++..+                  
T Consensus       163 ~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~  242 (844)
T 3j0a_A          163 VCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHI  242 (844)
T ss_dssp             CCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSC
T ss_pred             eCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccc
Confidence            43310              00    00111112222      2666666666432 111111                  


Q ss_pred             ---------------------cccCCceEEEEEcCCccchhhhhhchhhhceeEEEcCCcccccccchhHHHHhhhcccE
Q 038338          318 ---------------------VSVELQRYRIRIGDKLEYEIDQLLVKSEALRLMMLKGLEKVSILQENDGTKMLLQRTED  376 (421)
Q Consensus       318 ---------------------~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~  376 (421)
                                           ..++|+.|+++.+ ......+..+..+++|+.|++++|.+.  ...+..+..+ ++|++
T Consensus       243 ~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~i~--~~~~~~~~~l-~~L~~  318 (844)
T 3j0a_A          243 MGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHG-FVFSLNSRVFETLKDLKVLNLAYNKIN--KIADEAFYGL-DNLQV  318 (844)
T ss_dssp             CBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTC-CCCEECSCCSSSCCCCCEEEEESCCCC--EECTTTTTTC-SSCCE
T ss_pred             ccccccccccCCCChhhhhccccCCccEEECCCC-cccccChhhhhcCCCCCEEECCCCcCC--CCChHHhcCC-CCCCE
Confidence                                 0145667776532 333344566778888899999888743  2234456666 88999


Q ss_pred             EEeccccCcccccccccccCCCCCccEEEEeecCceeeec
Q 038338          377 LWLVKLEGVQNVVHELDDGEGFPRLKHLHVESCYEIVHIV  416 (421)
Q Consensus       377 L~l~~~~~~~~~~~~~~~~~~~~~L~~L~i~~c~~L~~l~  416 (421)
                      |++++|......+..+.   ++++|+.|++++| .+..+.
T Consensus       319 L~Ls~N~l~~~~~~~~~---~l~~L~~L~L~~N-~i~~~~  354 (844)
T 3j0a_A          319 LNLSYNLLGELYSSNFY---GLPKVAYIDLQKN-HIAIIQ  354 (844)
T ss_dssp             EEEESCCCSCCCSCSCS---SCTTCCEEECCSC-CCCCCC
T ss_pred             EECCCCCCCccCHHHhc---CCCCCCEEECCCC-CCCccC
Confidence            99998877555565555   8899999999887 455544

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.88  E-value=6.3e-22  Score=201.21  Aligned_cols=274  Identities=19%  Similarity=0.196  Sum_probs=174.3

Q ss_pred             ccCccCCCeEEEcCCCCCccCC-ccc-CCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCCC-hhhhccc
Q 038338          120 EETIRKDPIAISLPQRNIQELP-ERL-QCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLP-SSLGRLI  196 (421)
Q Consensus       120 ~~~~~~~l~~l~l~~~~~~~l~-~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp-~~i~~l~  196 (421)
                      .+..++++++|+++++.+..++ ... ++++|++|++++|.+  ..++...|.++++|++|++++|.+..++ ..++.++
T Consensus        44 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l--~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~  121 (680)
T 1ziw_A           44 NFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNEL--SQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQK  121 (680)
T ss_dssp             GGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCC--CCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCT
T ss_pred             HHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCcc--CccChhhhccCCCCCEEECCCCccCccChhHccccC
Confidence            3677889999999999886654 333 889999999999985  5677665688999999999999998865 5689999


Q ss_pred             CCcEEEcccccCCC--cccccCcCCCCEEEeeCCCCcccchh-h--cCCCCCCEEeccCCcCCcccchhhhcCC------
Q 038338          197 NLQTLCLDWCQLED--VAAIGQLKKLEILNLADSNIEQLPLE-I--GQLTGLRLLDLTNCWSLQVIAPNVISKL------  265 (421)
Q Consensus       197 ~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~l~~lp~~-~--~~l~~L~~L~l~~~~~~~~~~~~~l~~l------  265 (421)
                      +|++|++++|.+..  +..++++++|++|++++|.++.++.. +  ..+++|++|++++|.. ..+++..++.+      
T Consensus       122 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L  200 (680)
T 1ziw_A          122 NLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQI-KEFSPGCFHAIGRLFGL  200 (680)
T ss_dssp             TCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCC-CCBCTTGGGGSSEECEE
T ss_pred             CCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcc-cccChhhhhhhhhhhhh
Confidence            99999999999877  67788999999999999998877654 3  3568899999988744 33333324443      


Q ss_pred             ---------------------CCCcEEEcccCCCCCccccCCCCcChhhhcCCC--CCCEEEEEecCccccCCc-c-ccc
Q 038338          266 ---------------------SRLEELYMDNSFSGWEKVEGGSNASLVELKRLT--KLTTLEIEVRDAEILLPD-F-VSV  320 (421)
Q Consensus       266 ---------------------~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~--~L~~L~l~~~~~~~~~~~-~-~~~  320 (421)
                                           ++|+.|++++|.+....+        ..+..++  +|+.|++++|.+..++.. + .++
T Consensus       201 ~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~--------~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~  272 (680)
T 1ziw_A          201 FLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSN--------TTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLP  272 (680)
T ss_dssp             ECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECT--------TTTGGGGGSCCCEEECTTSCCCEECTTTTTTCT
T ss_pred             hccccccChhhHHHHHHHhhhccccEEEccCCcccccCh--------hHhhccCcCCCCEEECCCCCcCccCcccccCcc
Confidence                                 345555555554443322        2333333  366666666666544332 2 346


Q ss_pred             CCceEEEEEcCCccchhhhhhchhhhceeEEEcCCcccccc---cchh----HHHHhhhcccEEEeccccCccccccccc
Q 038338          321 ELQRYRIRIGDKLEYEIDQLLVKSEALRLMMLKGLEKVSIL---QEND----GTKMLLQRTEDLWLVKLEGVQNVVHELD  393 (421)
Q Consensus       321 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~---~~~~----~~~~~~~~L~~L~l~~~~~~~~~~~~~~  393 (421)
                      +|+.|++..+ ......+..+..+++|+.|++++|......   ..|.    .+..+ ++|++|++++|......+..+.
T Consensus       273 ~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~  350 (680)
T 1ziw_A          273 QLEYFFLEYN-NIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWL-KCLEHLNMEDNDIPGIKSNMFT  350 (680)
T ss_dssp             TCCEEECCSC-CBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTC-TTCCEEECCSCCBCCCCTTTTT
T ss_pred             cccEeeCCCC-ccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccC-CCCCEEECCCCccCCCChhHhc
Confidence            6666666532 333334455566666666666554311100   0111    23333 5566666665554443333333


Q ss_pred             ccCCCCCccEEEEeec
Q 038338          394 DGEGFPRLKHLHVESC  409 (421)
Q Consensus       394 ~~~~~~~L~~L~i~~c  409 (421)
                         ++++|+.|++++|
T Consensus       351 ---~l~~L~~L~Ls~n  363 (680)
T 1ziw_A          351 ---GLINLKYLSLSNS  363 (680)
T ss_dssp             ---TCTTCCEEECTTC
T ss_pred             ---cccCCcEEECCCC
Confidence               5555555555544

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.87  E-value=5.6e-24  Score=195.80  Aligned_cols=265  Identities=18%  Similarity=0.134  Sum_probs=195.8

Q ss_pred             CccCCCeEEEcCCCCCccCCc--ccCCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCCChhhhcccCCc
Q 038338          122 TIRKDPIAISLPQRNIQELPE--RLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPSSLGRLINLQ  199 (421)
Q Consensus       122 ~~~~~l~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~  199 (421)
                      ...+++++|++++|.+..++.  ...+++|+.|++++|.+ .. .+.  +..+++|++|++++|.++.++.    .++|+
T Consensus        31 ~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l-~~-~~~--~~~l~~L~~L~Ls~n~l~~l~~----~~~L~  102 (317)
T 3o53_A           31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVL-YE-TLD--LESLSTLRTLDLNNNYVQELLV----GPSIE  102 (317)
T ss_dssp             TTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCC-EE-EEE--ETTCTTCCEEECCSSEEEEEEE----CTTCC
T ss_pred             ccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcC-Cc-chh--hhhcCCCCEEECcCCccccccC----CCCcC
Confidence            345689999999999876653  34889999999999986 33 333  5789999999999998876553    47899


Q ss_pred             EEEcccccCCC-cccccCcCCCCEEEeeCCCCcccch-hhcCCCCCCEEeccCCcCCcccchhhhcCCCCCcEEEcccCC
Q 038338          200 TLCLDWCQLED-VAAIGQLKKLEILNLADSNIEQLPL-EIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNSF  277 (421)
Q Consensus       200 ~L~l~~~~~~~-~~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~  277 (421)
                      +|++++|.+.. +..  .+++|++|++++|++..++. .++.+++|++|++++|......+......+++|++|++++|.
T Consensus       103 ~L~l~~n~l~~~~~~--~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~  180 (317)
T 3o53_A          103 TLHAANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF  180 (317)
T ss_dssp             EEECCSSCCSEEEEC--CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC
T ss_pred             EEECCCCccCCcCcc--ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCc
Confidence            99999999887 432  36889999999999997754 678899999999999755443444433578999999999998


Q ss_pred             CCCccccCCCCcChhhhcCCCCCCEEEEEecCccccCCcc-cccCCceEEEEEcCCccchhhhhhchhhhceeEEEcCCc
Q 038338          278 SGWEKVEGGSNASLVELKRLTKLTTLEIEVRDAEILLPDF-VSVELQRYRIRIGDKLEYEIDQLLVKSEALRLMMLKGLE  356 (421)
Q Consensus       278 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~  356 (421)
                      +.....          ...+++|++|++++|.+..+|..+ .+++|+.|+++.+ .+. .+|..+..+++|+.|++++|.
T Consensus       181 l~~~~~----------~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N-~l~-~l~~~~~~l~~L~~L~l~~N~  248 (317)
T 3o53_A          181 IYDVKG----------QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNN-KLV-LIEKALRFSQNLEHFDLRGNG  248 (317)
T ss_dssp             CCEEEC----------CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTS-CCC-EECTTCCCCTTCCEEECTTCC
T ss_pred             Cccccc----------ccccccCCEEECCCCcCCcchhhhcccCcccEEECcCC-ccc-chhhHhhcCCCCCEEEccCCC
Confidence            776533          335789999999999998887776 4589999999743 444 467778888999999999988


Q ss_pred             ccccccchhHHHHhhhcccEEEeccccCcccccccccccCCCCCccEEEEeecCcee
Q 038338          357 KVSILQENDGTKMLLQRTEDLWLVKLEGVQNVVHELDDGEGFPRLKHLHVESCYEIV  413 (421)
Q Consensus       357 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~i~~c~~L~  413 (421)
                      +. ....+.++..+ ++|+.|++.++..++.......   ..+.+....-..|..+.
T Consensus       249 ~~-~~~~~~~~~~~-~~L~~l~l~~~~~l~~~~~~~~---~~~~~~~~~~~cc~~l~  300 (317)
T 3o53_A          249 FH-CGTLRDFFSKN-QRVQTVAKQTVKKLTGQNEEEC---TVPTLGHYGAYCCEDLP  300 (317)
T ss_dssp             CB-HHHHHHHHHTC-HHHHHHHHHHHHHHHSSSSCCC---SSTTCEEETTEEEBCCT
T ss_pred             cc-CcCHHHHHhcc-ccceEEECCCchhccCCchhcc---CCCceecccceeeccCC
Confidence            53 23566777776 8899999987776654432222   33444444444565554

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.87  E-value=1.6e-22  Score=186.00  Aligned_cols=262  Identities=15%  Similarity=0.074  Sum_probs=203.9

Q ss_pred             CeEEEcCCCCCccCCc-cc-CCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCCChhhhcccCCcEEEcc
Q 038338          127 PIAISLPQRNIQELPE-RL-QCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPSSLGRLINLQTLCLD  204 (421)
Q Consensus       127 l~~l~l~~~~~~~l~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~  204 (421)
                      +...++..+.+...+. .. .+++|+.|++++|.+  ..++...+..+++|++|++++|.+...++ +..+++|++|+++
T Consensus        12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l--~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls   88 (317)
T 3o53_A           12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPL--SQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLN   88 (317)
T ss_dssp             EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCC--CCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECC
T ss_pred             eeEeeccccchhhhHHHHhccCCCCCEEECcCCcc--CcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECc
Confidence            3444555555533322 22 667999999999986  55665556899999999999999987665 8899999999999


Q ss_pred             cccCCC-cccccCcCCCCEEEeeCCCCcccchhhcCCCCCCEEeccCCcCCcccchhhhcCCCCCcEEEcccCCCCCccc
Q 038338          205 WCQLED-VAAIGQLKKLEILNLADSNIEQLPLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNSFSGWEKV  283 (421)
Q Consensus       205 ~~~~~~-~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~  283 (421)
                      +|.++. +    ..++|++|++++|.+..++.  ..+++|++|++++|. +..++...++.+++|++|++++|.+....+
T Consensus        89 ~n~l~~l~----~~~~L~~L~l~~n~l~~~~~--~~~~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~  161 (317)
T 3o53_A           89 NNYVQELL----VGPSIETLHAANNNISRVSC--SRGQGKKNIYLANNK-ITMLRDLDEGCRSRVQYLDLKLNEIDTVNF  161 (317)
T ss_dssp             SSEEEEEE----ECTTCCEEECCSSCCSEEEE--CCCSSCEEEECCSSC-CCSGGGBCTGGGSSEEEEECTTSCCCEEEG
T ss_pred             CCcccccc----CCCCcCEEECCCCccCCcCc--cccCCCCEEECCCCC-CCCccchhhhccCCCCEEECCCCCCCcccH
Confidence            999876 4    33899999999999997765  347899999999964 445555447889999999999998887654


Q ss_pred             cCCCCcChhhh-cCCCCCCEEEEEecCccccCCcccccCCceEEEEEcCCccchhhhhhchhhhceeEEEcCCccccccc
Q 038338          284 EGGSNASLVEL-KRLTKLTTLEIEVRDAEILLPDFVSVELQRYRIRIGDKLEYEIDQLLVKSEALRLMMLKGLEKVSILQ  362 (421)
Q Consensus       284 ~~~~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~  362 (421)
                              ..+ ..+++|++|++++|.+..++....+++|+.|+++.+ .+. .++..+..+++|+.|++++|.+.   .
T Consensus       162 --------~~~~~~l~~L~~L~L~~N~l~~~~~~~~l~~L~~L~Ls~N-~l~-~l~~~~~~l~~L~~L~L~~N~l~---~  228 (317)
T 3o53_A          162 --------AELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSN-KLA-FMGPEFQSAAGVTWISLRNNKLV---L  228 (317)
T ss_dssp             --------GGGGGGTTTCCEEECTTSCCCEEECCCCCTTCCEEECCSS-CCC-EECGGGGGGTTCSEEECTTSCCC---E
T ss_pred             --------HHHhhccCcCCEEECCCCcCcccccccccccCCEEECCCC-cCC-cchhhhcccCcccEEECcCCccc---c
Confidence                    334 478999999999999988877767799999999744 444 34556889999999999998854   3


Q ss_pred             chhHHHHhhhcccEEEeccccCc-ccccccccccCCCCCccEEEEeecCceeee
Q 038338          363 ENDGTKMLLQRTEDLWLVKLEGV-QNVVHELDDGEGFPRLKHLHVESCYEIVHI  415 (421)
Q Consensus       363 ~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~~~~L~~L~i~~c~~L~~l  415 (421)
                      +|..+..+ ++|++|++++|+.. ..++..+.   .+++|+.|++.+|+.++..
T Consensus       229 l~~~~~~l-~~L~~L~l~~N~~~~~~~~~~~~---~~~~L~~l~l~~~~~l~~~  278 (317)
T 3o53_A          229 IEKALRFS-QNLEHFDLRGNGFHCGTLRDFFS---KNQRVQTVAKQTVKKLTGQ  278 (317)
T ss_dssp             ECTTCCCC-TTCCEEECTTCCCBHHHHHHHHH---TCHHHHHHHHHHHHHHHSS
T ss_pred             hhhHhhcC-CCCCEEEccCCCccCcCHHHHHh---ccccceEEECCCchhccCC
Confidence            55566666 99999999999987 55565555   8899999998877665543

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.86  E-value=4.2e-21  Score=173.88  Aligned_cols=219  Identities=21%  Similarity=0.177  Sum_probs=176.4

Q ss_pred             cEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCCC-hhhhcccCCcEEEcccccCCC--cccccCcCCCCEEEee
Q 038338          150 QLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLP-SSLGRLINLQTLCLDWCQLED--VAAIGQLKKLEILNLA  226 (421)
Q Consensus       150 ~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp-~~i~~l~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~  226 (421)
                      ++++..++..  ..+|..+   .++|++|++++|.++.++ ..+..+++|++|++++|.+..  +..+.++++|++|+++
T Consensus        14 ~~~~c~~~~l--~~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~   88 (285)
T 1ozn_A           14 VTTSCPQQGL--QAVPVGI---PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLS   88 (285)
T ss_dssp             CEEECCSSCC--SSCCTTC---CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             eEEEcCcCCc--ccCCcCC---CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCC
Confidence            5677777664  6677643   578999999999998866 468999999999999999887  6789999999999999


Q ss_pred             CCC-Cccc-chhhcCCCCCCEEeccCCcCCcccchhhhcCCCCCcEEEcccCCCCCccccCCCCcChhhhcCCCCCCEEE
Q 038338          227 DSN-IEQL-PLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNSFSGWEKVEGGSNASLVELKRLTKLTTLE  304 (421)
Q Consensus       227 ~~~-l~~l-p~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~  304 (421)
                      +|. +..+ |..+..+++|++|++++|.. ..++...+..+++|++|++++|.+...+.        ..++.+++|+.|+
T Consensus        89 ~n~~l~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--------~~~~~l~~L~~L~  159 (285)
T 1ozn_A           89 DNAQLRSVDPATFHGLGRLHTLHLDRCGL-QELGPGLFRGLAALQYLYLQDNALQALPD--------DTFRDLGNLTHLF  159 (285)
T ss_dssp             SCTTCCCCCTTTTTTCTTCCEEECTTSCC-CCCCTTTTTTCTTCCEEECCSSCCCCCCT--------TTTTTCTTCCEEE
T ss_pred             CCCCccccCHHHhcCCcCCCEEECCCCcC-CEECHhHhhCCcCCCEEECCCCcccccCH--------hHhccCCCccEEE
Confidence            997 8877 66789999999999999754 45544458899999999999998876554        5578899999999


Q ss_pred             EEecCccccCCc-c-cccCCceEEEEEcCCccchhhhhhchhhhceeEEEcCCcccccccchhHHHHhhhcccEEEeccc
Q 038338          305 IEVRDAEILLPD-F-VSVELQRYRIRIGDKLEYEIDQLLVKSEALRLMMLKGLEKVSILQENDGTKMLLQRTEDLWLVKL  382 (421)
Q Consensus       305 l~~~~~~~~~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~  382 (421)
                      +++|.+..++.. + .+++|+.|++.. +......|..+..+++|+.|++++|.+..  ..+..+..+ ++|++|++++|
T Consensus       160 l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~l-~~L~~L~l~~N  235 (285)
T 1ozn_A          160 LHGNRISSVPERAFRGLHSLDRLLLHQ-NRVAHVHPHAFRDLGRLMTLYLFANNLSA--LPTEALAPL-RALQYLRLNDN  235 (285)
T ss_dssp             CCSSCCCEECTTTTTTCTTCCEEECCS-SCCCEECTTTTTTCTTCCEEECCSSCCSC--CCHHHHTTC-TTCCEEECCSS
T ss_pred             CCCCcccccCHHHhcCccccCEEECCC-CcccccCHhHccCcccccEeeCCCCcCCc--CCHHHcccC-cccCEEeccCC
Confidence            999999888764 3 458999999974 34454557788899999999999988532  233456666 89999999998


Q ss_pred             cCcc
Q 038338          383 EGVQ  386 (421)
Q Consensus       383 ~~~~  386 (421)
                      +...
T Consensus       236 ~~~c  239 (285)
T 1ozn_A          236 PWVC  239 (285)
T ss_dssp             CEEC
T ss_pred             CccC
Confidence            8653

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.85  E-value=7.7e-21  Score=191.52  Aligned_cols=126  Identities=29%  Similarity=0.332  Sum_probs=91.9

Q ss_pred             cCCCeEEEcCCCCCccCCc--ccCCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCCCh-hhhcccCCcE
Q 038338          124 RKDPIAISLPQRNIQELPE--RLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPS-SLGRLINLQT  200 (421)
Q Consensus       124 ~~~l~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L~~  200 (421)
                      ..++++|++++|.+..++.  +.++++|++|++++|.+  ..++...|.++++|++|++++|.++.+|. .+..+.+|++
T Consensus        51 p~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i--~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~  128 (635)
T 4g8a_A           51 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEI--QTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQK  128 (635)
T ss_dssp             CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCC--CEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCE
T ss_pred             CcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcC--CCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCE
Confidence            4577888888888776663  23778888888888774  55666556778888888888887777664 4677788888


Q ss_pred             EEcccccCCC-c-ccccCcCCCCEEEeeCCCCc--ccchhhcCCCCCCEEeccCC
Q 038338          201 LCLDWCQLED-V-AAIGQLKKLEILNLADSNIE--QLPLEIGQLTGLRLLDLTNC  251 (421)
Q Consensus       201 L~l~~~~~~~-~-~~~~~l~~L~~L~l~~~~l~--~lp~~~~~l~~L~~L~l~~~  251 (421)
                      |++++|.++. + ..++++++|++|++++|.+.  .+|..++.+++|++|++++|
T Consensus       129 L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N  183 (635)
T 4g8a_A          129 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN  183 (635)
T ss_dssp             EECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSS
T ss_pred             EECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCc
Confidence            8888887777 3 45777888888888887776  34666777777777777765

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.85  E-value=1.8e-22  Score=196.32  Aligned_cols=236  Identities=19%  Similarity=0.137  Sum_probs=178.6

Q ss_pred             ccCCCeEEEcCCCCCccCCc--ccCCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCCChhhhcccCCcE
Q 038338          123 IRKDPIAISLPQRNIQELPE--RLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPSSLGRLINLQT  200 (421)
Q Consensus       123 ~~~~l~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~  200 (421)
                      .+++++.|++++|.+..++.  +..+++|++|++++|.+ .+..+   +..+++|++|++++|.++.+|.    .++|++
T Consensus        32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l-~~~~~---l~~l~~L~~L~Ls~N~l~~l~~----~~~L~~  103 (487)
T 3oja_A           32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVL-YETLD---LESLSTLRTLDLNNNYVQELLV----GPSIET  103 (487)
T ss_dssp             TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCC-EEEEE---CTTCTTCCEEECCSSEEEEEEE----CTTCCE
T ss_pred             cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCC-CCCcc---cccCCCCCEEEecCCcCCCCCC----CCCcCE
Confidence            34589999999998866653  33889999999999886 33333   5788999999999998877654    378999


Q ss_pred             EEcccccCCC-cccccCcCCCCEEEeeCCCCccc-chhhcCCCCCCEEeccCCcCCcccchhhhcCCCCCcEEEcccCCC
Q 038338          201 LCLDWCQLED-VAAIGQLKKLEILNLADSNIEQL-PLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNSFS  278 (421)
Q Consensus       201 L~l~~~~~~~-~~~~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  278 (421)
                      |++++|.+.. +..  .+++|+.|++++|.+..+ |..++.+++|++|++++|...+..|....+.+++|++|++++|.+
T Consensus       104 L~L~~N~l~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l  181 (487)
T 3oja_A          104 LHAANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI  181 (487)
T ss_dssp             EECCSSCCCCEEEC--CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCC
T ss_pred             EECcCCcCCCCCcc--ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcc
Confidence            9999999888 432  468899999999998866 456888999999999997655555555334789999999999887


Q ss_pred             CCccccCCCCcChhhhcCCCCCCEEEEEecCccccCCcc-cccCCceEEEEEcCCccchhhhhhchhhhceeEEEcCCcc
Q 038338          279 GWEKVEGGSNASLVELKRLTKLTTLEIEVRDAEILLPDF-VSVELQRYRIRIGDKLEYEIDQLLVKSEALRLMMLKGLEK  357 (421)
Q Consensus       279 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~  357 (421)
                      ...+.          ...+++|+.|++++|.+..+|+.+ .+++|+.|+++. +.+. .+|..+..+++|+.|++++|.+
T Consensus       182 ~~~~~----------~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~-N~l~-~lp~~l~~l~~L~~L~l~~N~l  249 (487)
T 3oja_A          182 YDVKG----------QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRN-NKLV-LIEKALRFSQNLEHFDLRGNGF  249 (487)
T ss_dssp             CEEEC----------CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTT-SCCC-EECTTCCCCTTCCEEECTTCCB
T ss_pred             ccccc----------cccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecC-CcCc-ccchhhccCCCCCEEEcCCCCC
Confidence            76533          345889999999999988887776 458899999874 3344 3677788889999999999874


Q ss_pred             cccccchhHHHHhhhcccEEEeccc
Q 038338          358 VSILQENDGTKMLLQRTEDLWLVKL  382 (421)
Q Consensus       358 ~~~~~~~~~~~~~~~~L~~L~l~~~  382 (421)
                      . ....+.++..+ +.|+.|.+..+
T Consensus       250 ~-c~~~~~~~~~l-~~L~~l~~~~~  272 (487)
T 3oja_A          250 H-CGTLRDFFSKN-QRVQTVAKQTV  272 (487)
T ss_dssp             C-HHHHHHHHTTC-HHHHHHHHHHH
T ss_pred             c-CcchHHHHHhC-CCCcEEecccc
Confidence            2 23456666665 77777777533

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.84  E-value=1.9e-21  Score=178.38  Aligned_cols=244  Identities=15%  Similarity=0.088  Sum_probs=141.4

Q ss_pred             CCCeEEEcCCCCCccCCcccCCCCccEEEeeecCCCCcccChHHh------ccCCCccEEEccCCCCCC-CChhh--hcc
Q 038338          125 KDPIAISLPQRNIQELPERLQCPNLQLFLLFRQGYGPVQISDLFF------EGTEELKVLSLIGIHFSS-LPSSL--GRL  195 (421)
Q Consensus       125 ~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~------~~l~~L~~L~l~~~~~~~-lp~~i--~~l  195 (421)
                      ++++.+++.++.+ .+|.... ..++.|++++|.+....++..+.      ..+++|++|++++|.+.+ +|..+  +.+
T Consensus        43 ~~L~~l~l~~n~l-~~p~~~~-~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l  120 (312)
T 1wwl_A           43 RSLEYLLKRVDTE-ADLGQFT-DIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATG  120 (312)
T ss_dssp             EECTTHHHHCCTT-CCCHHHH-HHHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCS
T ss_pred             CCceeEeeccccc-ccHHHHH-HHHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcC
Confidence            4455566666665 4554221 11666666666542223443321      146777777777777663 56554  667


Q ss_pred             cCCcEEEcccccCCC-cccccCc-----CCCCEEEeeCCCCcccc-hhhcCCCCCCEEeccCCcCCcc--cchh-hhcCC
Q 038338          196 INLQTLCLDWCQLED-VAAIGQL-----KKLEILNLADSNIEQLP-LEIGQLTGLRLLDLTNCWSLQV--IAPN-VISKL  265 (421)
Q Consensus       196 ~~L~~L~l~~~~~~~-~~~~~~l-----~~L~~L~l~~~~l~~lp-~~~~~l~~L~~L~l~~~~~~~~--~~~~-~l~~l  265 (421)
                      ++|++|++++|.+.. |..++.+     ++|++|++++|++..++ ..++.+++|++|++++|...+.  ++.. .++.+
T Consensus       121 ~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l  200 (312)
T 1wwl_A          121 PDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKF  200 (312)
T ss_dssp             CCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSC
T ss_pred             CCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccC
Confidence            777777777777666 6656555     67777777777777555 4566777777777777654433  2222 12566


Q ss_pred             CCCcEEEcccCCCCCccccCCCCcChhhhcCCCCCCEEEEEecCccccCC--cc-cccCCceEEEEEcCCccchhhhhhc
Q 038338          266 SRLEELYMDNSFSGWEKVEGGSNASLVELKRLTKLTTLEIEVRDAEILLP--DF-VSVELQRYRIRIGDKLEYEIDQLLV  342 (421)
Q Consensus       266 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~--~~-~~~~L~~L~l~~~~~~~~~~~~~~~  342 (421)
                      ++|++|++++|.+......     ....+..+++|+.|++++|.+...++  .. .+++|+.|+++.+ .+. .+|..+.
T Consensus       201 ~~L~~L~L~~N~l~~~~~~-----~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N-~l~-~ip~~~~  273 (312)
T 1wwl_A          201 PTLQVLALRNAGMETPSGV-----CSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFT-GLK-QVPKGLP  273 (312)
T ss_dssp             TTCCEEECTTSCCCCHHHH-----HHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTS-CCS-SCCSSCC
T ss_pred             CCCCEEECCCCcCcchHHH-----HHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCC-ccC-hhhhhcc
Confidence            7777777777766532110     00223456677777777777655331  11 3467777777533 333 4455444


Q ss_pred             hhhhceeEEEcCCcccccccchhHHHHhhhcccEEEeccccC
Q 038338          343 KSEALRLMMLKGLEKVSILQENDGTKMLLQRTEDLWLVKLEG  384 (421)
Q Consensus       343 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  384 (421)
                        ++|+.|++++|.+...   |. +..+ ++|++|++++|+.
T Consensus       274 --~~L~~L~Ls~N~l~~~---p~-~~~l-~~L~~L~L~~N~l  308 (312)
T 1wwl_A          274 --AKLSVLDLSYNRLDRN---PS-PDEL-PQVGNLSLKGNPF  308 (312)
T ss_dssp             --SEEEEEECCSSCCCSC---CC-TTTS-CEEEEEECTTCTT
T ss_pred             --CCceEEECCCCCCCCC---hh-HhhC-CCCCEEeccCCCC
Confidence              6777777777775332   33 4454 7777777777764

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.84  E-value=5.3e-20  Score=185.38  Aligned_cols=112  Identities=19%  Similarity=0.262  Sum_probs=95.5

Q ss_pred             ccCccCCCeEEEcCCCCCccCCcc--cCCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCCCh-hhhccc
Q 038338          120 EETIRKDPIAISLPQRNIQELPER--LQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPS-SLGRLI  196 (421)
Q Consensus       120 ~~~~~~~l~~l~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~  196 (421)
                      .+..++++++|++++|.+..++..  .++++|++|++++|.+  ..++...|.++++|++|++++|.++.+|+ .++.++
T Consensus        71 ~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l--~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~  148 (635)
T 4g8a_A           71 SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI--QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLK  148 (635)
T ss_dssp             TTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC--CEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCT
T ss_pred             HHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcC--CCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCc
Confidence            467889999999999999887653  3899999999999985  67787778999999999999999988765 489999


Q ss_pred             CCcEEEcccccCCC---cccccCcCCCCEEEeeCCCCccc
Q 038338          197 NLQTLCLDWCQLED---VAAIGQLKKLEILNLADSNIEQL  233 (421)
Q Consensus       197 ~L~~L~l~~~~~~~---~~~~~~l~~L~~L~l~~~~l~~l  233 (421)
                      +|++|++++|.+..   |..++.+++|++|++++|++..+
T Consensus       149 ~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~  188 (635)
T 4g8a_A          149 TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI  188 (635)
T ss_dssp             TCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEE
T ss_pred             ccCeeccccCccccCCCchhhccchhhhhhcccCcccccc
Confidence            99999999998765   67888899999999988876533

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.84  E-value=4.6e-19  Score=176.13  Aligned_cols=234  Identities=17%  Similarity=0.116  Sum_probs=182.7

Q ss_pred             CCCeEEEcCCCCCccCCcccCCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCCChhhhcccCCcEEEcc
Q 038338          125 KDPIAISLPQRNIQELPERLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPSSLGRLINLQTLCLD  204 (421)
Q Consensus       125 ~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~  204 (421)
                      ++++.|++++|.+..+|.  .+++|++|++++|.+  ..+|.    .+++|++|++++|.++.+|.   .+.+|++|+++
T Consensus        61 ~~L~~L~L~~N~l~~lp~--~l~~L~~L~Ls~N~l--~~lp~----~l~~L~~L~Ls~N~l~~l~~---~l~~L~~L~L~  129 (622)
T 3g06_A           61 AHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQL--TSLPV----LPPGLLELSIFSNPLTHLPA---LPSGLCKLWIF  129 (622)
T ss_dssp             TTCSEEEECSCCCSCCCC--CCTTCCEEEECSCCC--SCCCC----CCTTCCEEEECSCCCCCCCC---CCTTCCEEECC
T ss_pred             CCCcEEEecCCCCCCCCC--cCCCCCEEEcCCCcC--CcCCC----CCCCCCEEECcCCcCCCCCC---CCCCcCEEECC
Confidence            789999999999888887  678999999999986  45664    57899999999999988877   56889999999


Q ss_pred             cccCCC-cccccCcCCCCEEEeeCCCCcccchhhcCCCCCCEEeccCCcCCcccchhhhcCCCCCcEEEcccCCCCCccc
Q 038338          205 WCQLED-VAAIGQLKKLEILNLADSNIEQLPLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNSFSGWEKV  283 (421)
Q Consensus       205 ~~~~~~-~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~  283 (421)
                      +|.++. |..   +++|++|++++|+++.+|.   .+++|+.|++++| .+..+|    ..+++|+.|++++|.+...+.
T Consensus       130 ~N~l~~lp~~---l~~L~~L~Ls~N~l~~l~~---~~~~L~~L~L~~N-~l~~l~----~~~~~L~~L~Ls~N~l~~l~~  198 (622)
T 3g06_A          130 GNQLTSLPVL---PPGLQELSVSDNQLASLPA---LPSELCKLWAYNN-QLTSLP----MLPSGLQELSVSDNQLASLPT  198 (622)
T ss_dssp             SSCCSCCCCC---CTTCCEEECCSSCCSCCCC---CCTTCCEEECCSS-CCSCCC----CCCTTCCEEECCSSCCSCCCC
T ss_pred             CCCCCcCCCC---CCCCCEEECcCCcCCCcCC---ccCCCCEEECCCC-CCCCCc----ccCCCCcEEECCCCCCCCCCC
Confidence            999888 654   4889999999999888875   3578889999885 455566    357889999999988765432


Q ss_pred             cCCCCcChhhhcCCCCCCEEEEEecCccccCCcccccCCceEEEEEcCCccchhhhhhchhhhceeEEEcCCcccccccc
Q 038338          284 EGGSNASLVELKRLTKLTTLEIEVRDAEILLPDFVSVELQRYRIRIGDKLEYEIDQLLVKSEALRLMMLKGLEKVSILQE  363 (421)
Q Consensus       284 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~  363 (421)
                                  ..++|+.|.+++|.+..+|..  +++|+.|+++.+ .+.. +|   ..+++|+.|++++|.+.   .+
T Consensus       199 ------------~~~~L~~L~L~~N~l~~l~~~--~~~L~~L~Ls~N-~L~~-lp---~~l~~L~~L~Ls~N~L~---~l  256 (622)
T 3g06_A          199 ------------LPSELYKLWAYNNRLTSLPAL--PSGLKELIVSGN-RLTS-LP---VLPSELKELMVSGNRLT---SL  256 (622)
T ss_dssp             ------------CCTTCCEEECCSSCCSSCCCC--CTTCCEEECCSS-CCSC-CC---CCCTTCCEEECCSSCCS---CC
T ss_pred             ------------ccchhhEEECcCCcccccCCC--CCCCCEEEccCC-ccCc-CC---CCCCcCcEEECCCCCCC---cC
Confidence                        236889999999988888764  478999998744 3332 33   45688999999998754   23


Q ss_pred             hhHHHHhhhcccEEEeccccCcccccccccccCCCCCccEEEEeecC
Q 038338          364 NDGTKMLLQRTEDLWLVKLEGVQNVVHELDDGEGFPRLKHLHVESCY  410 (421)
Q Consensus       364 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~i~~c~  410 (421)
                      |.   . +++|++|++++|... .+|..+.   ++++|+.|++.+|+
T Consensus       257 p~---~-~~~L~~L~Ls~N~L~-~lp~~l~---~l~~L~~L~L~~N~  295 (622)
T 3g06_A          257 PM---L-PSGLLSLSVYRNQLT-RLPESLI---HLSSETTVNLEGNP  295 (622)
T ss_dssp             CC---C-CTTCCEEECCSSCCC-SCCGGGG---GSCTTCEEECCSCC
T ss_pred             Cc---c-cccCcEEeCCCCCCC-cCCHHHh---hccccCEEEecCCC
Confidence            33   2 388999999998654 6776666   89999999999886

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.83  E-value=6e-20  Score=165.46  Aligned_cols=221  Identities=19%  Similarity=0.226  Sum_probs=149.9

Q ss_pred             EcCCCCCccCCcccCCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCCCh-hhhcccCCcEEEcccccCC
Q 038338          131 SLPQRNIQELPERLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPS-SLGRLINLQTLCLDWCQLE  209 (421)
Q Consensus       131 ~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~  209 (421)
                      ...+..+..+|.... ++++.|++++|.+  ..++...+.++++|++|++++|.+..++. .+..+++|++|++++|.+.
T Consensus        13 ~c~~~~l~~ip~~l~-~~l~~L~ls~n~l--~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~   89 (276)
T 2z62_A           13 QCMELNFYKIPDNLP-FSTKNLDLSFNPL--RHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ   89 (276)
T ss_dssp             ECTTSCCSSCCSSSC-TTCCEEECTTCCC--CEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC
T ss_pred             EecCCCccccCCCCC-CCccEEECCCCcc--cccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccC
Confidence            334444455554332 4678888888775  44554445778888888888888777543 5777888888888888877


Q ss_pred             C--cccccCcCCCCEEEeeCCCCcccch-hhcCCCCCCEEeccCCcCCc-ccchhhhcCCCCCcEEEcccCCCCCccccC
Q 038338          210 D--VAAIGQLKKLEILNLADSNIEQLPL-EIGQLTGLRLLDLTNCWSLQ-VIAPNVISKLSRLEELYMDNSFSGWEKVEG  285 (421)
Q Consensus       210 ~--~~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~  285 (421)
                      .  +..+.++++|++|++++|.+..++. .++.+++|++|++++|.... .+|.. ++.+++|++|++++|.+.....  
T Consensus        90 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~-~~~l~~L~~L~Ls~N~l~~~~~--  166 (276)
T 2z62_A           90 SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQSIYC--  166 (276)
T ss_dssp             EECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGG-GGGCTTCCEEECCSSCCCEECG--
T ss_pred             ccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchh-hccCCCCCEEECCCCCCCcCCH--
Confidence            7  4677888888888888888876655 47788888888888864433 24544 7788888888888887766543  


Q ss_pred             CCCcChhhhcCCCCCC-EEEEEecCccccCCcc-cccCCceEEEEEcCCccchhhhhhchhhhceeEEEcCCcccccc
Q 038338          286 GSNASLVELKRLTKLT-TLEIEVRDAEILLPDF-VSVELQRYRIRIGDKLEYEIDQLLVKSEALRLMMLKGLEKVSIL  361 (421)
Q Consensus       286 ~~~~~~~~l~~l~~L~-~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~  361 (421)
                         ..+..+..++.|. .|++++|.+..++... ...+|+.|+++.+ .+....+..+..+++|+.|++++|.+....
T Consensus       167 ---~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c  240 (276)
T 2z62_A          167 ---TDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNPWDCSC  240 (276)
T ss_dssp             ---GGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSS-CCSCCCTTTTTTCCSCCEEECCSSCBCCCT
T ss_pred             ---HHhhhhhhccccceeeecCCCcccccCccccCCCcccEEECCCC-ceeecCHhHhcccccccEEEccCCcccccC
Confidence               1123344444444 7888888887766554 3367888888743 344333344678899999999998865443

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.83  E-value=4.9e-21  Score=186.23  Aligned_cols=236  Identities=17%  Similarity=0.082  Sum_probs=189.0

Q ss_pred             CCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCCChhhhcccCCcEEEcccccCCC-cccccCcCCCCEE
Q 038338          145 QCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPSSLGRLINLQTLCLDWCQLED-VAAIGQLKKLEIL  223 (421)
Q Consensus       145 ~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~-~~~~~~l~~L~~L  223 (421)
                      .+++|+.|++++|.+  ..++...|..+++|++|++++|.+...++ ++.+++|++|++++|.+.. +.    .++|++|
T Consensus        32 ~~~~L~~L~Ls~n~l--~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~----~~~L~~L  104 (487)
T 3oja_A           32 SAWNVKELDLSGNPL--SQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLV----GPSIETL  104 (487)
T ss_dssp             TGGGCCEEECCSSCC--CCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEEE----CTTCCEE
T ss_pred             cCCCccEEEeeCCcC--CCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCCC----CCCcCEE
Confidence            456899999999986  44555556899999999999999987665 8999999999999999877 43    3899999


Q ss_pred             EeeCCCCcccchhhcCCCCCCEEeccCCcCCcccchhhhcCCCCCcEEEcccCCCCCccccCCCCcChhhhc-CCCCCCE
Q 038338          224 NLADSNIEQLPLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNSFSGWEKVEGGSNASLVELK-RLTKLTT  302 (421)
Q Consensus       224 ~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~-~l~~L~~  302 (421)
                      ++++|.+..++.  ..+++|++|++++|...+..|. .++.+++|+.|++++|.+....+        ..+. .+++|+.
T Consensus       105 ~L~~N~l~~~~~--~~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~--------~~l~~~l~~L~~  173 (487)
T 3oja_A          105 HAANNNISRVSC--SRGQGKKNIYLANNKITMLRDL-DEGCRSRVQYLDLKLNEIDTVNF--------AELAASSDTLEH  173 (487)
T ss_dssp             ECCSSCCCCEEE--CCCSSCEEEECCSSCCCSGGGB-CGGGGSSEEEEECTTSCCCEEEG--------GGGGGGTTTCCE
T ss_pred             ECcCCcCCCCCc--cccCCCCEEECCCCCCCCCCch-hhcCCCCCCEEECCCCCCCCcCh--------HHHhhhCCcccE
Confidence            999999998765  3578999999999755444444 47899999999999999887655        4454 7899999


Q ss_pred             EEEEecCccccCCcccccCCceEEEEEcCCccchhhhhhchhhhceeEEEcCCcccccccchhHHHHhhhcccEEEeccc
Q 038338          303 LEIEVRDAEILLPDFVSVELQRYRIRIGDKLEYEIDQLLVKSEALRLMMLKGLEKVSILQENDGTKMLLQRTEDLWLVKL  382 (421)
Q Consensus       303 L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~  382 (421)
                      |++++|.+..++....+++|+.|+++. +.+. .+|+.+..+++|+.|++++|.+.   .+|.++..+ ++|+.|++++|
T Consensus       174 L~Ls~N~l~~~~~~~~l~~L~~L~Ls~-N~l~-~~~~~~~~l~~L~~L~Ls~N~l~---~lp~~l~~l-~~L~~L~l~~N  247 (487)
T 3oja_A          174 LNLQYNFIYDVKGQVVFAKLKTLDLSS-NKLA-FMGPEFQSAAGVTWISLRNNKLV---LIEKALRFS-QNLEHFDLRGN  247 (487)
T ss_dssp             EECTTSCCCEEECCCCCTTCCEEECCS-SCCC-EECGGGGGGTTCSEEECTTSCCC---EECTTCCCC-TTCCEEECTTC
T ss_pred             EecCCCccccccccccCCCCCEEECCC-CCCC-CCCHhHcCCCCccEEEecCCcCc---ccchhhccC-CCCCEEEcCCC
Confidence            999999998887776779999999974 4444 35566889999999999998854   256666666 89999999999


Q ss_pred             cCc-ccccccccccCCCCCccEEEEe
Q 038338          383 EGV-QNVVHELDDGEGFPRLKHLHVE  407 (421)
Q Consensus       383 ~~~-~~~~~~~~~~~~~~~L~~L~i~  407 (421)
                      +.. ..++..+.   .+++|+.+.+.
T Consensus       248 ~l~c~~~~~~~~---~l~~L~~l~~~  270 (487)
T 3oja_A          248 GFHCGTLRDFFS---KNQRVQTVAKQ  270 (487)
T ss_dssp             CBCHHHHHHHHT---TCHHHHHHHHH
T ss_pred             CCcCcchHHHHH---hCCCCcEEecc
Confidence            876 45555444   67777777664

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.83  E-value=8.6e-22  Score=180.74  Aligned_cols=240  Identities=18%  Similarity=0.135  Sum_probs=137.9

Q ss_pred             CCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCC--CChhhh-------cccCCcEEEcccccCCC--cccc
Q 038338          146 CPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSS--LPSSLG-------RLINLQTLCLDWCQLED--VAAI  214 (421)
Q Consensus       146 ~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--lp~~i~-------~l~~L~~L~l~~~~~~~--~~~~  214 (421)
                      .++|+.|++.+|.+   .+|..+...   |++|++++|.+..  +|..+.       .+.+|++|++++|.+.+  |..+
T Consensus        42 ~~~L~~l~l~~n~l---~~p~~~~~~---L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  115 (312)
T 1wwl_A           42 GRSLEYLLKRVDTE---ADLGQFTDI---IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPL  115 (312)
T ss_dssp             EEECTTHHHHCCTT---CCCHHHHHH---HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCS
T ss_pred             CCCceeEeeccccc---ccHHHHHHH---HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHH
Confidence            34556666666653   455554332   6666777666643  555444       56677777777777664  5554


Q ss_pred             --cCcCCCCEEEeeCCCCcccchhhcCC-----CCCCEEeccCCcCCcccchhhhcCCCCCcEEEcccCCCCCccccCCC
Q 038338          215 --GQLKKLEILNLADSNIEQLPLEIGQL-----TGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNSFSGWEKVEGGS  287 (421)
Q Consensus       215 --~~l~~L~~L~l~~~~l~~lp~~~~~l-----~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~  287 (421)
                        +.+++|++|++++|++..+|..++.+     ++|++|++++|. +..++...++.+++|++|++++|.+.....    
T Consensus       116 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~----  190 (312)
T 1wwl_A          116 LEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAH-SLNFSCEQVRVFPALSTLDLSDNPELGERG----  190 (312)
T ss_dssp             SSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCS-CCCCCTTTCCCCSSCCEEECCSCTTCHHHH----
T ss_pred             HHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCC-CccchHHHhccCCCCCEEECCCCCcCcchH----
Confidence              66777777777777776666656555     677777777753 344443336677777777777766443210    


Q ss_pred             CcChhhh--cCCCCCCEEEEEecCccccCC---cc--cccCCceEEEEEcCCccchhh-hhhchhhhceeEEEcCCcccc
Q 038338          288 NASLVEL--KRLTKLTTLEIEVRDAEILLP---DF--VSVELQRYRIRIGDKLEYEID-QLLVKSEALRLMMLKGLEKVS  359 (421)
Q Consensus       288 ~~~~~~l--~~l~~L~~L~l~~~~~~~~~~---~~--~~~~L~~L~l~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~  359 (421)
                        .+..+  +.+++|++|++++|.+..++.   .+  .+++|+.|+++.+ .+....| ..+..+++|+.|++++|.+. 
T Consensus       191 --~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-  266 (312)
T 1wwl_A          191 --LISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHN-SLRDAAGAPSCDWPSQLNSLNLSFTGLK-  266 (312)
T ss_dssp             --HHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTS-CCCSSCCCSCCCCCTTCCEEECTTSCCS-
T ss_pred             --HHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCC-cCCcccchhhhhhcCCCCEEECCCCccC-
Confidence              01222  566777777777776653332   21  2367777777533 2322221 33445667777777776643 


Q ss_pred             cccchhHHHHhhhcccEEEeccccCcccccccccccCCCCCccEEEEeecC
Q 038338          360 ILQENDGTKMLLQRTEDLWLVKLEGVQNVVHELDDGEGFPRLKHLHVESCY  410 (421)
Q Consensus       360 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~i~~c~  410 (421)
                        .+|.++.   ++|++|++++|.... +|. +.   .+++|+.|++++++
T Consensus       267 --~ip~~~~---~~L~~L~Ls~N~l~~-~p~-~~---~l~~L~~L~L~~N~  307 (312)
T 1wwl_A          267 --QVPKGLP---AKLSVLDLSYNRLDR-NPS-PD---ELPQVGNLSLKGNP  307 (312)
T ss_dssp             --SCCSSCC---SEEEEEECCSSCCCS-CCC-TT---TSCEEEEEECTTCT
T ss_pred             --hhhhhcc---CCceEEECCCCCCCC-Chh-Hh---hCCCCCEEeccCCC
Confidence              3343322   567777777765433 343 33   66777777776663

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.82  E-value=4.6e-19  Score=170.70  Aligned_cols=242  Identities=17%  Similarity=0.137  Sum_probs=142.6

Q ss_pred             CCCeEEEcCCCCCccCCcccCCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCCChhhhcccCCcEEEcc
Q 038338          125 KDPIAISLPQRNIQELPERLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPSSLGRLINLQTLCLD  204 (421)
Q Consensus       125 ~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~  204 (421)
                      ++++.|++++|.+..++...  ++|++|++++|.+  ..+|.  ++.+++|++|++++|.++.+|..+   .+|++|+++
T Consensus       111 ~~L~~L~l~~n~l~~l~~~~--~~L~~L~L~~n~l--~~lp~--~~~l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~  181 (454)
T 1jl5_A          111 QSLKSLLVDNNNLKALSDLP--PLLEYLGVSNNQL--EKLPE--LQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAG  181 (454)
T ss_dssp             TTCCEEECCSSCCSCCCSCC--TTCCEEECCSSCC--SSCCC--CTTCTTCCEEECCSSCCSCCCCCC---TTCCEEECC
T ss_pred             CCCcEEECCCCccCcccCCC--CCCCEEECcCCCC--CCCcc--cCCCCCCCEEECCCCcCcccCCCc---ccccEEECc
Confidence            56666666666665544321  5677777777765  33552  467777777777777777666543   367777777


Q ss_pred             cccCCCcccccCcCCCCEEEeeCCCCcccchhhcCCCCCCEEeccCCcCCcccchhhhcCCCCCcEEEcccCCCCCcccc
Q 038338          205 WCQLEDVAAIGQLKKLEILNLADSNIEQLPLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNSFSGWEKVE  284 (421)
Q Consensus       205 ~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~  284 (421)
                      +|.+...+.++++++|++|++++|.+..+|...   ++|++|++++|. +..+|.  ++.+++|++|++++|.+...+. 
T Consensus       182 ~n~l~~l~~~~~l~~L~~L~l~~N~l~~l~~~~---~~L~~L~l~~n~-l~~lp~--~~~l~~L~~L~l~~N~l~~l~~-  254 (454)
T 1jl5_A          182 NNQLEELPELQNLPFLTAIYADNNSLKKLPDLP---LSLESIVAGNNI-LEELPE--LQNLPFLTTIYADNNLLKTLPD-  254 (454)
T ss_dssp             SSCCSSCCCCTTCTTCCEEECCSSCCSSCCCCC---TTCCEEECCSSC-CSSCCC--CTTCTTCCEEECCSSCCSSCCS-
T ss_pred             CCcCCcCccccCCCCCCEEECCCCcCCcCCCCc---CcccEEECcCCc-CCcccc--cCCCCCCCEEECCCCcCCcccc-
Confidence            777776225777777777777777777666432   477777777753 346663  6777778888877776654321 


Q ss_pred             CCCCcChhhhcCCCCCCEEEEEecCccccCCcccccCCceEEEEEcCCccc--hhhh-------------hhchh-hhce
Q 038338          285 GGSNASLVELKRLTKLTTLEIEVRDAEILLPDFVSVELQRYRIRIGDKLEY--EIDQ-------------LLVKS-EALR  348 (421)
Q Consensus       285 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~-------------~~~~l-~~L~  348 (421)
                                 ..++|+.|++++|.+..+|..  .++|+.|+++.+. ...  ..|.             .+..+ ++|+
T Consensus       255 -----------~~~~L~~L~l~~N~l~~l~~~--~~~L~~L~ls~N~-l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~  320 (454)
T 1jl5_A          255 -----------LPPSLEALNVRDNYLTDLPEL--PQSLTFLDVSENI-FSGLSELPPNLYYLNASSNEIRSLCDLPPSLE  320 (454)
T ss_dssp             -----------CCTTCCEEECCSSCCSCCCCC--CTTCCEEECCSSC-CSEESCCCTTCCEEECCSSCCSEECCCCTTCC
T ss_pred             -----------cccccCEEECCCCcccccCcc--cCcCCEEECcCCc-cCcccCcCCcCCEEECcCCcCCcccCCcCcCC
Confidence                       124555555555555444432  2444444443221 111  0000             01122 4677


Q ss_pred             eEEEcCCcccccccchhHHHHhhhcccEEEeccccCcccccccccccCCCCCccEEEEeecC
Q 038338          349 LMMLKGLEKVSILQENDGTKMLLQRTEDLWLVKLEGVQNVVHELDDGEGFPRLKHLHVESCY  410 (421)
Q Consensus       349 ~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~i~~c~  410 (421)
                      .|++++|.+..   .|..    +++|++|++++|... .+|.      .+++|+.|++++|+
T Consensus       321 ~L~Ls~N~l~~---lp~~----~~~L~~L~L~~N~l~-~lp~------~l~~L~~L~L~~N~  368 (454)
T 1jl5_A          321 ELNVSNNKLIE---LPAL----PPRLERLIASFNHLA-EVPE------LPQNLKQLHVEYNP  368 (454)
T ss_dssp             EEECCSSCCSC---CCCC----CTTCCEEECCSSCCS-CCCC------CCTTCCEEECCSSC
T ss_pred             EEECCCCcccc---cccc----CCcCCEEECCCCccc-cccc------hhhhccEEECCCCC
Confidence            77777766432   2222    267777777777543 4443      45788888888774

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.82  E-value=2e-19  Score=162.92  Aligned_cols=195  Identities=22%  Similarity=0.217  Sum_probs=157.4

Q ss_pred             cCccCCCeEEEcCCCCCccCCcccCCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCCChhhhcccCCcE
Q 038338          121 ETIRKDPIAISLPQRNIQELPERLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPSSLGRLINLQT  200 (421)
Q Consensus       121 ~~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~  200 (421)
                      ...+++++.+++.++.+..+|.... ++++.|++++|.+  ..++...|..+++|++|++++|.++.++.. +.+++|++
T Consensus         6 ~~~l~~l~~l~~~~~~l~~ip~~~~-~~l~~L~L~~N~l--~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~   81 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRNLTALPPDLP-KDTTILHLSENLL--YTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGT   81 (290)
T ss_dssp             EECSTTCCEEECTTSCCSSCCSCCC-TTCCEEECTTSCC--SEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCE
T ss_pred             ccccCCccEEECCCCCCCcCCCCCC-CCCCEEEcCCCcC--CccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCE
Confidence            4566788999999988888876543 6899999999986  445444568899999999999998887664 78889999


Q ss_pred             EEcccccCCC-cccccCcCCCCEEEeeCCCCcccch-hhcCCCCCCEEeccCCcCCcccchhhhcCCCCCcEEEcccCCC
Q 038338          201 LCLDWCQLED-VAAIGQLKKLEILNLADSNIEQLPL-EIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNSFS  278 (421)
Q Consensus       201 L~l~~~~~~~-~~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  278 (421)
                      |++++|.+.. |..+..+++|++|++++|+++.+|. .+..+++|++|++++| .+..++...+..+++|+.|++++|.+
T Consensus        82 L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l  160 (290)
T 1p9a_G           82 LDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN-ELKTLPPGLLTPTPKLEKLSLANNNL  160 (290)
T ss_dssp             EECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred             EECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCC-CCCccChhhcccccCCCEEECCCCcC
Confidence            9999999888 8888899999999999999998874 5888999999999986 45567776678889999999999888


Q ss_pred             CCccccCCCCcChhhhcCCCCCCEEEEEecCccccCCcc-cccCCceEEEE
Q 038338          279 GWEKVEGGSNASLVELKRLTKLTTLEIEVRDAEILLPDF-VSVELQRYRIR  328 (421)
Q Consensus       279 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~  328 (421)
                      ...+.        ..+..+++|+.|++++|.+..+|..+ ..++|+.+++.
T Consensus       161 ~~l~~--------~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~  203 (290)
T 1p9a_G          161 TELPA--------GLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLH  203 (290)
T ss_dssp             SCCCT--------TTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECC
T ss_pred             CccCH--------HHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeC
Confidence            76554        45677889999999999888888765 33667777765

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.82  E-value=4.5e-19  Score=162.18  Aligned_cols=191  Identities=18%  Similarity=0.220  Sum_probs=143.1

Q ss_pred             cCccCCCeEEEcCCCCCccCCcccCCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCCChhhhcccCCcE
Q 038338          121 ETIRKDPIAISLPQRNIQELPERLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPSSLGRLINLQT  200 (421)
Q Consensus       121 ~~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~  200 (421)
                      ...++++++|++.++.+..++....+++|+.|++++|.+  ..++.  +..+++|++|++++|.++.++ .+..+++|++
T Consensus        37 ~~~l~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i--~~~~~--~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~  111 (308)
T 1h6u_A           37 QADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQI--TDLAP--LKNLTKITELELSGNPLKNVS-AIAGLQSIKT  111 (308)
T ss_dssp             HHHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCC--CCCGG--GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCE
T ss_pred             HHHcCCcCEEEeeCCCccCchhhhccCCCCEEEccCCcC--CCChh--HccCCCCCEEEccCCcCCCch-hhcCCCCCCE
Confidence            344668888888888887777666788888888888875  44544  477888888888888887765 4778888888


Q ss_pred             EEcccccCCCcccccCcCCCCEEEeeCCCCcccchhhcCCCCCCEEeccCCcCCcccchhhhcCCCCCcEEEcccCCCCC
Q 038338          201 LCLDWCQLEDVAAIGQLKKLEILNLADSNIEQLPLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNSFSGW  280 (421)
Q Consensus       201 L~l~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  280 (421)
                      |++++|.+.....+..+++|++|++++|.+..++. +..+++|++|++++| .+..++.  +..+++|++|++++|.+..
T Consensus       112 L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~--l~~l~~L~~L~l~~n~l~~  187 (308)
T 1h6u_A          112 LDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNA-QVSDLTP--LANLSKLTTLKADDNKISD  187 (308)
T ss_dssp             EECTTSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSS-CCCCCGG--GTTCTTCCEEECCSSCCCC
T ss_pred             EECCCCCCCCchhhcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCC-cCCCChh--hcCCCCCCEEECCCCccCc
Confidence            88888888774447888888888888888887765 778888888888886 4445554  6788888888888887765


Q ss_pred             ccccCCCCcChhhhcCCCCCCEEEEEecCccccCCcccccCCceEEEEEc
Q 038338          281 EKVEGGSNASLVELKRLTKLTTLEIEVRDAEILLPDFVSVELQRYRIRIG  330 (421)
Q Consensus       281 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~  330 (421)
                      ..          .+..+++|+.|++++|.+..+++...+++|+.|++..+
T Consensus       188 ~~----------~l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~l~~N  227 (308)
T 1h6u_A          188 IS----------PLASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTNQ  227 (308)
T ss_dssp             CG----------GGGGCTTCCEEECTTSCCCBCGGGTTCTTCCEEEEEEE
T ss_pred             Ch----------hhcCCCCCCEEEccCCccCccccccCCCCCCEEEccCC
Confidence            42          26777888888888888777665335577777777644

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.81  E-value=7e-19  Score=157.86  Aligned_cols=179  Identities=22%  Similarity=0.322  Sum_probs=134.0

Q ss_pred             CCCeEEEcCCCCCccCCcccCCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCCChh-hhcccCCcEEEc
Q 038338          125 KDPIAISLPQRNIQELPERLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPSS-LGRLINLQTLCL  203 (421)
Q Consensus       125 ~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~-i~~l~~L~~L~l  203 (421)
                      ...+.++++++.+..+|.... ++++.|++++|.+  ..++...|.++++|++|++++|.++.+|.. +..+++|++|++
T Consensus        16 ~~~~~l~~~~~~l~~ip~~~~-~~l~~L~l~~n~l--~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l   92 (270)
T 2o6q_A           16 NNKNSVDCSSKKLTAIPSNIP-ADTKKLDLQSNKL--SSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWV   92 (270)
T ss_dssp             TTTTEEECTTSCCSSCCSCCC-TTCSEEECCSSCC--SCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEEC
T ss_pred             CCCCEEEccCCCCCccCCCCC-CCCCEEECcCCCC--CeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEEC
Confidence            356788888888877775433 5788888888875  455555567888888888888888887665 467888888888


Q ss_pred             ccccCCC--cccccCcCCCCEEEeeCCCCcccchh-hcCCCCCCEEeccCCcCCcccchhhhcCCCCCcEEEcccCCCCC
Q 038338          204 DWCQLED--VAAIGQLKKLEILNLADSNIEQLPLE-IGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNSFSGW  280 (421)
Q Consensus       204 ~~~~~~~--~~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  280 (421)
                      ++|.+..  +..+.++++|++|++++|.+..++.. +..+++|++|++++| .+..++...++.+++|++|++++|.+..
T Consensus        93 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~  171 (270)
T 2o6q_A           93 TDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYN-ELQSLPKGVFDKLTSLKELRLYNNQLKR  171 (270)
T ss_dssp             CSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred             CCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCC-cCCccCHhHccCCcccceeEecCCcCcE
Confidence            8888877  35567888888888888888877654 678888888888885 4556666556788888888888887766


Q ss_pred             ccccCCCCcChhhhcCCCCCCEEEEEecCccccCC
Q 038338          281 EKVEGGSNASLVELKRLTKLTTLEIEVRDAEILLP  315 (421)
Q Consensus       281 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~  315 (421)
                      .+.        ..+..+++|+.|++++|.+..+|.
T Consensus       172 ~~~--------~~~~~l~~L~~L~L~~N~l~~~~~  198 (270)
T 2o6q_A          172 VPE--------GAFDKLTELKTLKLDNNQLKRVPE  198 (270)
T ss_dssp             CCT--------TTTTTCTTCCEEECCSSCCSCCCT
T ss_pred             eCh--------hHhccCCCcCEEECCCCcCCcCCH
Confidence            544        446777888888888777766654

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.81  E-value=1.7e-18  Score=166.68  Aligned_cols=250  Identities=19%  Similarity=0.155  Sum_probs=180.5

Q ss_pred             cCCCeEEEcCCCCCccCCcccCCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCCChhhhcccCCcEEEc
Q 038338          124 RKDPIAISLPQRNIQELPERLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPSSLGRLINLQTLCL  203 (421)
Q Consensus       124 ~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l  203 (421)
                      .++++.|++++|.+..+|..  .++|+.|++++|.+  ..++.    ..++|++|++++|.++.+| .++.+.+|++|++
T Consensus        90 ~~~L~~L~l~~n~l~~lp~~--~~~L~~L~l~~n~l--~~l~~----~~~~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l  160 (454)
T 1jl5_A           90 PPHLESLVASCNSLTELPEL--PQSLKSLLVDNNNL--KALSD----LPPLLEYLGVSNNQLEKLP-ELQNSSFLKIIDV  160 (454)
T ss_dssp             CTTCSEEECCSSCCSSCCCC--CTTCCEEECCSSCC--SCCCS----CCTTCCEEECCSSCCSSCC-CCTTCTTCCEEEC
T ss_pred             cCCCCEEEccCCcCCccccc--cCCCcEEECCCCcc--CcccC----CCCCCCEEECcCCCCCCCc-ccCCCCCCCEEEC
Confidence            57899999999999778753  48999999999986  34442    1378999999999999988 5999999999999


Q ss_pred             ccccCCC-cccccCcCCCCEEEeeCCCCcccchhhcCCCCCCEEeccCCcCCcccchhhhcCCCCCcEEEcccCCCCCcc
Q 038338          204 DWCQLED-VAAIGQLKKLEILNLADSNIEQLPLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNSFSGWEK  282 (421)
Q Consensus       204 ~~~~~~~-~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~  282 (421)
                      ++|.++. |..+   .+|++|++++|++..+| .++.+++|++|++++|. +..+|.    ..++|++|++++|.+...+
T Consensus       161 ~~N~l~~lp~~~---~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~-l~~l~~----~~~~L~~L~l~~n~l~~lp  231 (454)
T 1jl5_A          161 DNNSLKKLPDLP---PSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNS-LKKLPD----LPLSLESIVAGNNILEELP  231 (454)
T ss_dssp             CSSCCSCCCCCC---TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSC-CSSCCC----CCTTCCEEECCSSCCSSCC
T ss_pred             CCCcCcccCCCc---ccccEEECcCCcCCcCc-cccCCCCCCEEECCCCc-CCcCCC----CcCcccEEECcCCcCCccc
Confidence            9999888 6543   58999999999999988 68999999999999974 445554    2358999999999877332


Q ss_pred             ccCCCCcChhhhcCCCCCCEEEEEecCccccCCcccccCCceEEEEEcCCccchhhhhhchhhhceeEEEcCCccccccc
Q 038338          283 VEGGSNASLVELKRLTKLTTLEIEVRDAEILLPDFVSVELQRYRIRIGDKLEYEIDQLLVKSEALRLMMLKGLEKVSILQ  362 (421)
Q Consensus       283 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~  362 (421)
                                .++.+++|++|++++|.+..+|..  .++|+.|+++.+. ... +|.   .+++|+.|++++|.+.....
T Consensus       232 ----------~~~~l~~L~~L~l~~N~l~~l~~~--~~~L~~L~l~~N~-l~~-l~~---~~~~L~~L~ls~N~l~~l~~  294 (454)
T 1jl5_A          232 ----------ELQNLPFLTTIYADNNLLKTLPDL--PPSLEALNVRDNY-LTD-LPE---LPQSLTFLDVSENIFSGLSE  294 (454)
T ss_dssp             ----------CCTTCTTCCEEECCSSCCSSCCSC--CTTCCEEECCSSC-CSC-CCC---CCTTCCEEECCSSCCSEESC
T ss_pred             ----------ccCCCCCCCEEECCCCcCCccccc--ccccCEEECCCCc-ccc-cCc---ccCcCCEEECcCCccCcccC
Confidence                      377899999999999999888764  4899999997443 332 332   23678888888876533111


Q ss_pred             chhHH-------------HHhhhcccEEEeccccCcccccccccccCCCCCccEEEEeecCceeeec
Q 038338          363 ENDGT-------------KMLLQRTEDLWLVKLEGVQNVVHELDDGEGFPRLKHLHVESCYEIVHIV  416 (421)
Q Consensus       363 ~~~~~-------------~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~i~~c~~L~~l~  416 (421)
                      .+..+             ..+.++|++|++++|... .++.      .+++|+.|++++| +++.++
T Consensus       295 ~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~-~lp~------~~~~L~~L~L~~N-~l~~lp  353 (454)
T 1jl5_A          295 LPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPA------LPPRLERLIASFN-HLAEVP  353 (454)
T ss_dssp             CCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCS-CCCC------CCTTCCEEECCSS-CCSCCC
T ss_pred             cCCcCCEEECcCCcCCcccCCcCcCCEEECCCCccc-cccc------cCCcCCEEECCCC-cccccc
Confidence            11000             011135555555554432 2322      3577777777776 455443

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.81  E-value=3.1e-19  Score=163.22  Aligned_cols=193  Identities=21%  Similarity=0.273  Sum_probs=157.2

Q ss_pred             ccCCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCCChhhhcccCCcEEEcccccCCCcccccCcCCCCE
Q 038338          143 RLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPSSLGRLINLQTLCLDWCQLEDVAAIGQLKKLEI  222 (421)
Q Consensus       143 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~  222 (421)
                      ...+++|+.|+++++.+  ..++.  +..+++|++|++++|.+..++. +..+++|++|++++|.+...+.+.++++|++
T Consensus        37 ~~~l~~L~~L~l~~~~i--~~l~~--~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~  111 (308)
T 1h6u_A           37 QADLDGITTLSAFGTGV--TTIEG--VQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVSAIAGLQSIKT  111 (308)
T ss_dssp             HHHHHTCCEEECTTSCC--CCCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCGGGTTCTTCCE
T ss_pred             HHHcCCcCEEEeeCCCc--cCchh--hhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCchhhcCCCCCCE
Confidence            34678999999999875  45553  4789999999999999988887 8999999999999999888667899999999


Q ss_pred             EEeeCCCCcccchhhcCCCCCCEEeccCCcCCcccchhhhcCCCCCcEEEcccCCCCCccccCCCCcChhhhcCCCCCCE
Q 038338          223 LNLADSNIEQLPLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNSFSGWEKVEGGSNASLVELKRLTKLTT  302 (421)
Q Consensus       223 L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~  302 (421)
                      |++++|++..++. +..+++|++|++++| .+..++.  ++.+++|+.|++++|.+....          .+..+++|+.
T Consensus       112 L~l~~n~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~--l~~l~~L~~L~l~~n~l~~~~----------~l~~l~~L~~  177 (308)
T 1h6u_A          112 LDLTSTQITDVTP-LAGLSNLQVLYLDLN-QITNISP--LAGLTNLQYLSIGNAQVSDLT----------PLANLSKLTT  177 (308)
T ss_dssp             EECTTSCCCCCGG-GTTCTTCCEEECCSS-CCCCCGG--GGGCTTCCEEECCSSCCCCCG----------GGTTCTTCCE
T ss_pred             EECCCCCCCCchh-hcCCCCCCEEECCCC-ccCcCcc--ccCCCCccEEEccCCcCCCCh----------hhcCCCCCCE
Confidence            9999999998865 889999999999996 4455655  788999999999998876542          2788899999


Q ss_pred             EEEEecCccccCCcccccCCceEEEEEcCCccchhhhhhchhhhceeEEEcCCcc
Q 038338          303 LEIEVRDAEILLPDFVSVELQRYRIRIGDKLEYEIDQLLVKSEALRLMMLKGLEK  357 (421)
Q Consensus       303 L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~  357 (421)
                      |++++|.+..++....+++|+.|+++.+. ... .+ .+..+++|+.|++++|.+
T Consensus       178 L~l~~n~l~~~~~l~~l~~L~~L~L~~N~-l~~-~~-~l~~l~~L~~L~l~~N~i  229 (308)
T 1h6u_A          178 LKADDNKISDISPLASLPNLIEVHLKNNQ-ISD-VS-PLANTSNLFIVTLTNQTI  229 (308)
T ss_dssp             EECCSSCCCCCGGGGGCTTCCEEECTTSC-CCB-CG-GGTTCTTCCEEEEEEEEE
T ss_pred             EECCCCccCcChhhcCCCCCCEEEccCCc-cCc-cc-cccCCCCCCEEEccCCee
Confidence            99999998887764466889999887443 332 22 378888999999988775

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.81  E-value=1.7e-18  Score=171.99  Aligned_cols=237  Identities=16%  Similarity=0.154  Sum_probs=191.8

Q ss_pred             CCeEEEcCCCCCccCCcccCCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCCChhhhcccCCcEEEccc
Q 038338          126 DPIAISLPQRNIQELPERLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPSSLGRLINLQTLCLDW  205 (421)
Q Consensus       126 ~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~  205 (421)
                      +++.++++++.+..+|.... ++|+.|++++|.+  ..+|.    .+++|++|++++|.++.+|.   .+++|++|++++
T Consensus        41 ~l~~L~ls~n~L~~lp~~l~-~~L~~L~L~~N~l--~~lp~----~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~  110 (622)
T 3g06_A           41 GNAVLNVGESGLTTLPDCLP-AHITTLVIPDNNL--TSLPA----LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFS  110 (622)
T ss_dssp             CCCEEECCSSCCSCCCSCCC-TTCSEEEECSCCC--SCCCC----CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECS
T ss_pred             CCcEEEecCCCcCccChhhC-CCCcEEEecCCCC--CCCCC----cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcC
Confidence            57899999999998887555 8999999999986  46665    47999999999999999887   679999999999


Q ss_pred             ccCCC-cccccCcCCCCEEEeeCCCCcccchhhcCCCCCCEEeccCCcCCcccchhhhcCCCCCcEEEcccCCCCCcccc
Q 038338          206 CQLED-VAAIGQLKKLEILNLADSNIEQLPLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNSFSGWEKVE  284 (421)
Q Consensus       206 ~~~~~-~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~  284 (421)
                      |.++. |.   .+++|+.|++++|+++.+|..   +++|++|++++| .+..+|.    .+.+|+.|++++|.++..+  
T Consensus       111 N~l~~l~~---~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N-~l~~l~~----~~~~L~~L~L~~N~l~~l~--  177 (622)
T 3g06_A          111 NPLTHLPA---LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDN-QLASLPA----LPSELCKLWAYNNQLTSLP--  177 (622)
T ss_dssp             CCCCCCCC---CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSS-CCSCCCC----CCTTCCEEECCSSCCSCCC--
T ss_pred             CcCCCCCC---CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCC-cCCCcCC----ccCCCCEEECCCCCCCCCc--
Confidence            99988 55   678999999999999999874   589999999997 4555654    3578999999999877542  


Q ss_pred             CCCCcChhhhcCCCCCCEEEEEecCccccCCcccccCCceEEEEEcCCccchhhhhhchhhhceeEEEcCCcccccccch
Q 038338          285 GGSNASLVELKRLTKLTTLEIEVRDAEILLPDFVSVELQRYRIRIGDKLEYEIDQLLVKSEALRLMMLKGLEKVSILQEN  364 (421)
Q Consensus       285 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~  364 (421)
                                ..+++|+.|++++|.+..+|..  .++|+.|++..+ .+. .+|.   .+++|+.|++++|.+..   +|
T Consensus       178 ----------~~~~~L~~L~Ls~N~l~~l~~~--~~~L~~L~L~~N-~l~-~l~~---~~~~L~~L~Ls~N~L~~---lp  237 (622)
T 3g06_A          178 ----------MLPSGLQELSVSDNQLASLPTL--PSELYKLWAYNN-RLT-SLPA---LPSGLKELIVSGNRLTS---LP  237 (622)
T ss_dssp             ----------CCCTTCCEEECCSSCCSCCCCC--CTTCCEEECCSS-CCS-SCCC---CCTTCCEEECCSSCCSC---CC
T ss_pred             ----------ccCCCCcEEECCCCCCCCCCCc--cchhhEEECcCC-ccc-ccCC---CCCCCCEEEccCCccCc---CC
Confidence                      3468999999999999988864  488999999744 333 2332   35899999999988543   33


Q ss_pred             hHHHHhhhcccEEEeccccCcccccccccccCCCCCccEEEEeecCceeeecc
Q 038338          365 DGTKMLLQRTEDLWLVKLEGVQNVVHELDDGEGFPRLKHLHVESCYEIVHIVG  417 (421)
Q Consensus       365 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~i~~c~~L~~l~~  417 (421)
                         .. +++|++|++++|.. +.+|.      .+++|+.|++++| +|..+++
T Consensus       238 ---~~-l~~L~~L~Ls~N~L-~~lp~------~~~~L~~L~Ls~N-~L~~lp~  278 (622)
T 3g06_A          238 ---VL-PSELKELMVSGNRL-TSLPM------LPSGLLSLSVYRN-QLTRLPE  278 (622)
T ss_dssp             ---CC-CTTCCEEECCSSCC-SCCCC------CCTTCCEEECCSS-CCCSCCG
T ss_pred             ---CC-CCcCcEEECCCCCC-CcCCc------ccccCcEEeCCCC-CCCcCCH
Confidence               22 48999999999865 45554      5789999999998 6777754

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.80  E-value=7e-21  Score=184.47  Aligned_cols=233  Identities=17%  Similarity=0.132  Sum_probs=104.3

Q ss_pred             ccCCCccEEEccCCCCCC-CChhhh-----cccCCcEEEcccccCCC------cccccCcCCCCEEEeeCCCCccc-chh
Q 038338          170 EGTEELKVLSLIGIHFSS-LPSSLG-----RLINLQTLCLDWCQLED------VAAIGQLKKLEILNLADSNIEQL-PLE  236 (421)
Q Consensus       170 ~~l~~L~~L~l~~~~~~~-lp~~i~-----~l~~L~~L~l~~~~~~~------~~~~~~l~~L~~L~l~~~~l~~l-p~~  236 (421)
                      ..+++|++|++++|.+.. .+..+.     ...+|++|++++|.+..      +..+..+++|++|++++|.+... +..
T Consensus       110 ~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~  189 (461)
T 1z7x_W          110 RTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRV  189 (461)
T ss_dssp             TSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHH
T ss_pred             ccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHH
Confidence            445555555555555432 111111     12345555555555443      22334445555555555554411 111


Q ss_pred             hc-----CCCCCCEEeccCCcCCcc----cchhhhcCCCCCcEEEcccCCCCCccccCCCCcChhh-hcCCCCCCEEEEE
Q 038338          237 IG-----QLTGLRLLDLTNCWSLQV----IAPNVISKLSRLEELYMDNSFSGWEKVEGGSNASLVE-LKRLTKLTTLEIE  306 (421)
Q Consensus       237 ~~-----~l~~L~~L~l~~~~~~~~----~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~-l~~l~~L~~L~l~  306 (421)
                      +.     ..++|++|++++|.....    ++.. +..+++|++|++++|.+.....    ..+... ...+++|++|+++
T Consensus       190 l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~-l~~~~~L~~L~Ls~n~l~~~~~----~~l~~~~~~~~~~L~~L~L~  264 (461)
T 1z7x_W          190 LCQGLKDSPCQLEALKLESCGVTSDNCRDLCGI-VASKASLRELALGSNKLGDVGM----AELCPGLLHPSSRLRTLWIW  264 (461)
T ss_dssp             HHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHH-HHHCTTCCEEECCSSBCHHHHH----HHHHHHHTSTTCCCCEEECT
T ss_pred             HHHHHhcCCCCceEEEccCCCCcHHHHHHHHHH-HHhCCCccEEeccCCcCChHHH----HHHHHHHhcCCCCceEEECc
Confidence            11     234555555555432221    2222 4455555555555554332211    000011 1235566666666


Q ss_pred             ecCccc-----cCCcc-cccCCceEEEEEcCCccchhhhhhchh-----hhceeEEEcCCcccccc--cchhHHHHhhhc
Q 038338          307 VRDAEI-----LLPDF-VSVELQRYRIRIGDKLEYEIDQLLVKS-----EALRLMMLKGLEKVSIL--QENDGTKMLLQR  373 (421)
Q Consensus       307 ~~~~~~-----~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l-----~~L~~L~l~~~~~~~~~--~~~~~~~~~~~~  373 (421)
                      +|.++.     ++..+ .+++|+.|+++.+ ......+..+...     ++|++|++++|.+....  ..+.++... ++
T Consensus       265 ~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~-~~  342 (461)
T 1z7x_W          265 ECGITAKGCGDLCRVLRAKESLKELSLAGN-ELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQN-RF  342 (461)
T ss_dssp             TSCCCHHHHHHHHHHHHHCTTCCEEECTTC-CCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHC-SS
T ss_pred             CCCCCHHHHHHHHHHHhhCCCcceEECCCC-CCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhC-CC
Confidence            665543     33333 2366666666532 2222222222221     46666666666542221  133444454 77


Q ss_pred             ccEEEeccccCcccccccccc--cCCCCCccEEEEeec
Q 038338          374 TEDLWLVKLEGVQNVVHELDD--GEGFPRLKHLHVESC  409 (421)
Q Consensus       374 L~~L~l~~~~~~~~~~~~~~~--~~~~~~L~~L~i~~c  409 (421)
                      |++|++++|......+..+..  ....++|+.|++++|
T Consensus       343 L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n  380 (461)
T 1z7x_W          343 LLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADC  380 (461)
T ss_dssp             CCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred             ccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCC
Confidence            777777777543322222210  012567778877777

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.80  E-value=3.5e-19  Score=159.99  Aligned_cols=184  Identities=20%  Similarity=0.260  Sum_probs=122.2

Q ss_pred             EcCCCCCccCCcccCCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCCChhhhcccCCcEEEcccccCCC
Q 038338          131 SLPQRNIQELPERLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPSSLGRLINLQTLCLDWCQLED  210 (421)
Q Consensus       131 ~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~  210 (421)
                      .+..+.+........+++++.|++.++.+  ..++.  +..+++|++|++++|.+..++ .++.+++|++|++++|.++.
T Consensus        25 ~l~~~~~~~~~~~~~l~~L~~L~l~~~~i--~~~~~--l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~   99 (272)
T 3rfs_A           25 NLKKKSVTDAVTQNELNSIDQIIANNSDI--KSVQG--IQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQS   99 (272)
T ss_dssp             HHTCSCTTSEECHHHHTTCCEEECTTSCC--CCCTT--GGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCC
T ss_pred             HhcCcccccccccccccceeeeeeCCCCc--ccccc--cccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCc
Confidence            33334443333334677788888877764  33443  366788888888888777654 57777888888888887777


Q ss_pred             --cccccCcCCCCEEEeeCCCCcccchh-hcCCCCCCEEeccCCcCCcccchhhhcCCCCCcEEEcccCCCCCccccCCC
Q 038338          211 --VAAIGQLKKLEILNLADSNIEQLPLE-IGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNSFSGWEKVEGGS  287 (421)
Q Consensus       211 --~~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~  287 (421)
                        +..++++++|++|++++|++..+|.. ++.+++|++|++++| .+..++...++.+++|++|++++|.+...+.    
T Consensus       100 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~----  174 (272)
T 3rfs_A          100 LPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHN-QLQSLPKGVFDKLTNLTELDLSYNQLQSLPE----  174 (272)
T ss_dssp             CCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCT----
T ss_pred             cChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCC-ccCccCHHHhccCccCCEEECCCCCcCccCH----
Confidence              34467778888888888877766654 577788888888776 4445555546777788888887777665443    


Q ss_pred             CcChhhhcCCCCCCEEEEEecCccccCCcc--cccCCceEEEE
Q 038338          288 NASLVELKRLTKLTTLEIEVRDAEILLPDF--VSVELQRYRIR  328 (421)
Q Consensus       288 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~  328 (421)
                          ..++.+++|+.|++++|.+..++...  .+++|+.|++.
T Consensus       175 ----~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~  213 (272)
T 3rfs_A          175 ----GVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLH  213 (272)
T ss_dssp             ----TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred             ----HHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEcc
Confidence                44667777777777777776555432  23555555553

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.80  E-value=3.1e-19  Score=160.32  Aligned_cols=207  Identities=23%  Similarity=0.221  Sum_probs=165.1

Q ss_pred             ccCccCCCeEEEcCCCCCccCCcccCCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCCChh-hhcccCC
Q 038338          120 EETIRKDPIAISLPQRNIQELPERLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPSS-LGRLINL  198 (421)
Q Consensus       120 ~~~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~-i~~l~~L  198 (421)
                      ....+++++.+.+.++.+..++....+++|+.|++++|.+  ..++  .+..+++|++|++++|.++.++.. ++.+++|
T Consensus        36 ~~~~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l--~~~~--~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  111 (272)
T 3rfs_A           36 TQNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKL--HDIS--ALKELTNLTYLILTGNQLQSLPNGVFDKLTNL  111 (272)
T ss_dssp             CHHHHTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCC--CCCG--GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTC
T ss_pred             ccccccceeeeeeCCCCcccccccccCCCCcEEECCCCCC--CCch--hhcCCCCCCEEECCCCccCccChhHhcCCcCC
Confidence            3456789999999999998888878999999999999986  3343  358899999999999999987654 6899999


Q ss_pred             cEEEcccccCCC--cccccCcCCCCEEEeeCCCCcccchh-hcCCCCCCEEeccCCcCCcccchhhhcCCCCCcEEEccc
Q 038338          199 QTLCLDWCQLED--VAAIGQLKKLEILNLADSNIEQLPLE-IGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDN  275 (421)
Q Consensus       199 ~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~  275 (421)
                      ++|++++|.+..  +..++++++|++|++++|+++.+|.. ++.+++|++|++++|. +..++...++.+++|++|++++
T Consensus       112 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~  190 (272)
T 3rfs_A          112 KELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQ-LQSLPEGVFDKLTQLKDLRLYQ  190 (272)
T ss_dssp             CEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCS
T ss_pred             CEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCC-cCccCHHHhcCCccCCEEECCC
Confidence            999999999988  45589999999999999999988765 5899999999999974 5566666578999999999999


Q ss_pred             CCCCCccccCCCCcChhhhcCCCCCCEEEEEecCccccCCcccccCCceEEEEEcCCccchhhhhhchhh
Q 038338          276 SFSGWEKVEGGSNASLVELKRLTKLTTLEIEVRDAEILLPDFVSVELQRYRIRIGDKLEYEIDQLLVKSE  345 (421)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~  345 (421)
                      |.+...++        ..++.+++|+.|++++|.+..-     +++|+.+++. .+.....+|.+++.++
T Consensus       191 N~l~~~~~--------~~~~~l~~L~~L~l~~N~~~~~-----~~~l~~l~~~-~n~~~g~ip~~~~~~~  246 (272)
T 3rfs_A          191 NQLKSVPD--------GVFDRLTSLQYIWLHDNPWDCT-----CPGIRYLSEW-INKHSGVVRNSAGSVA  246 (272)
T ss_dssp             SCCSCCCT--------TTTTTCTTCCEEECCSSCBCCC-----TTTTHHHHHH-HHHTGGGBBCTTSCBC
T ss_pred             CcCCccCH--------HHHhCCcCCCEEEccCCCcccc-----CcHHHHHHHH-HHhCCCcccCcccccC
Confidence            98887654        5678899999999999976422     2345555543 2233334555555443

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.79  E-value=1.1e-18  Score=156.64  Aligned_cols=199  Identities=23%  Similarity=0.246  Sum_probs=161.8

Q ss_pred             CCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCCCh-hhhcccCCcEEEcccccCCC-c-ccccCcCCCCEE
Q 038338          147 PNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPS-SLGRLINLQTLCLDWCQLED-V-AAIGQLKKLEIL  223 (421)
Q Consensus       147 ~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~-~-~~~~~l~~L~~L  223 (421)
                      ...+.++++++.+  ..+|..+   .+++++|++++|.+..++. .+..+++|++|++++|.++. + ..+.++++|++|
T Consensus        16 ~~~~~l~~~~~~l--~~ip~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L   90 (270)
T 2o6q_A           16 NNKNSVDCSSKKL--TAIPSNI---PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETL   90 (270)
T ss_dssp             TTTTEEECTTSCC--SSCCSCC---CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEE
T ss_pred             CCCCEEEccCCCC--CccCCCC---CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEE
Confidence            3578899998885  5677654   4789999999999988765 68999999999999999988 4 446889999999


Q ss_pred             EeeCCCCcccchh-hcCCCCCCEEeccCCcCCcccchhhhcCCCCCcEEEcccCCCCCccccCCCCcChhhhcCCCCCCE
Q 038338          224 NLADSNIEQLPLE-IGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNSFSGWEKVEGGSNASLVELKRLTKLTT  302 (421)
Q Consensus       224 ~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~  302 (421)
                      ++++|.+..+|.. +..+++|++|++++| .+..++...++.+++|++|++++|.+...+.        ..++.+++|+.
T Consensus        91 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--------~~~~~l~~L~~  161 (270)
T 2o6q_A           91 WVTDNKLQALPIGVFDQLVNLAELRLDRN-QLKSLPPRVFDSLTKLTYLSLGYNELQSLPK--------GVFDKLTSLKE  161 (270)
T ss_dssp             ECCSSCCCCCCTTTTTTCSSCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCT--------TTTTTCTTCCE
T ss_pred             ECCCCcCCcCCHhHcccccCCCEEECCCC-ccCeeCHHHhCcCcCCCEEECCCCcCCccCH--------hHccCCcccce
Confidence            9999999988765 688999999999996 4556666557899999999999998876654        45788999999


Q ss_pred             EEEEecCccccCCcc--cccCCceEEEEEcCCccchhhhhhchhhhceeEEEcCCccccc
Q 038338          303 LEIEVRDAEILLPDF--VSVELQRYRIRIGDKLEYEIDQLLVKSEALRLMMLKGLEKVSI  360 (421)
Q Consensus       303 L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~  360 (421)
                      |++++|.+..++...  .+++|+.|+++.+ .+....+..+..+++|+.|++++|.+...
T Consensus       162 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  220 (270)
T 2o6q_A          162 LRLYNNQLKRVPEGAFDKLTELKTLKLDNN-QLKRVPEGAFDSLEKLKMLQLQENPWDCT  220 (270)
T ss_dssp             EECCSSCCSCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCBCCS
T ss_pred             eEecCCcCcEeChhHhccCCCcCEEECCCC-cCCcCCHHHhccccCCCEEEecCCCeeCC
Confidence            999999998887653  4589999999744 44433344578899999999999886433

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.79  E-value=1.5e-20  Score=182.11  Aligned_cols=275  Identities=16%  Similarity=0.106  Sum_probs=188.9

Q ss_pred             CCeEEEcCCCCCcc-----CCccc-CCCCccEEEeeecCCCCcccCh----HHhccCCCccEEEccCCCCCC-----CCh
Q 038338          126 DPIAISLPQRNIQE-----LPERL-QCPNLQLFLLFRQGYGPVQISD----LFFEGTEELKVLSLIGIHFSS-----LPS  190 (421)
Q Consensus       126 ~l~~l~l~~~~~~~-----l~~~~-~~~~L~~L~l~~~~~~~~~~~~----~~~~~l~~L~~L~l~~~~~~~-----lp~  190 (421)
                      ++++|++++|.+..     ++... .+++|+.|++++|.+ ....+.    .++...++|++|++++|.++.     ++.
T Consensus        86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i-~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~  164 (461)
T 1z7x_W           86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLL-GDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLAS  164 (461)
T ss_dssp             CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBC-HHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHH
T ss_pred             ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcC-chHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHH
Confidence            68999999998852     34333 788999999999886 322222    222335679999999998865     456


Q ss_pred             hhhcccCCcEEEcccccCCC--ccccc-----CcCCCCEEEeeCCCCcc-----cchhhcCCCCCCEEeccCCcCCcc--
Q 038338          191 SLGRLINLQTLCLDWCQLED--VAAIG-----QLKKLEILNLADSNIEQ-----LPLEIGQLTGLRLLDLTNCWSLQV--  256 (421)
Q Consensus       191 ~i~~l~~L~~L~l~~~~~~~--~~~~~-----~l~~L~~L~l~~~~l~~-----lp~~~~~l~~L~~L~l~~~~~~~~--  256 (421)
                      .+..+++|++|++++|.+..  +..+.     ..++|++|++++|.++.     ++..+..+++|++|++++|.....  
T Consensus       165 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~  244 (461)
T 1z7x_W          165 VLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGM  244 (461)
T ss_dssp             HHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHH
T ss_pred             HHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHH
Confidence            67778999999999998766  44443     35689999999998884     577788899999999998743221  


Q ss_pred             --cchhhhcCCCCCcEEEcccCCCCCccccCCCCcChhhhcCCCCCCEEEEEecCcccc-----CCcc--cccCCceEEE
Q 038338          257 --IAPNVISKLSRLEELYMDNSFSGWEKVEGGSNASLVELKRLTKLTTLEIEVRDAEIL-----LPDF--VSVELQRYRI  327 (421)
Q Consensus       257 --~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-----~~~~--~~~~L~~L~l  327 (421)
                        +.......+++|++|++++|.++....    ..+...+..+++|++|++++|.++..     ...+  ..++|+.|++
T Consensus       245 ~~l~~~~~~~~~~L~~L~L~~n~l~~~~~----~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L  320 (461)
T 1z7x_W          245 AELCPGLLHPSSRLRTLWIWECGITAKGC----GDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWV  320 (461)
T ss_dssp             HHHHHHHTSTTCCCCEEECTTSCCCHHHH----HHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEEC
T ss_pred             HHHHHHHhcCCCCceEEECcCCCCCHHHH----HHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEc
Confidence              122223368899999999987765421    11235577788999999998887422     1111  1158899988


Q ss_pred             EEcCCccc---hhhhhhchhhhceeEEEcCCcccccccchhHHHHh----hhcccEEEeccccCcc----cccccccccC
Q 038338          328 RIGDKLEY---EIDQLLVKSEALRLMMLKGLEKVSILQENDGTKML----LQRTEDLWLVKLEGVQ----NVVHELDDGE  396 (421)
Q Consensus       328 ~~~~~~~~---~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~----~~~L~~L~l~~~~~~~----~~~~~~~~~~  396 (421)
                      ..+.....   .++..+..+++|+.|++++|.+..  ..+..+...    .++|++|++++|....    .++..+.   
T Consensus       321 ~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~--~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~---  395 (461)
T 1z7x_W          321 KSCSFTAACCSHFSSVLAQNRFLLELQISNNRLED--AGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLL---  395 (461)
T ss_dssp             TTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHH--HHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHH---
T ss_pred             CCCCCchHHHHHHHHHHhhCCCccEEEccCCcccc--ccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHH---
Confidence            75543322   245667778899999999987432  222333331    2589999999887653    5555554   


Q ss_pred             CCCCccEEEEeecC
Q 038338          397 GFPRLKHLHVESCY  410 (421)
Q Consensus       397 ~~~~L~~L~i~~c~  410 (421)
                      .+++|++|++++|+
T Consensus       396 ~~~~L~~L~l~~N~  409 (461)
T 1z7x_W          396 ANHSLRELDLSNNC  409 (461)
T ss_dssp             HCCCCCEEECCSSS
T ss_pred             hCCCccEEECCCCC
Confidence            68889999988874

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.79  E-value=9.1e-19  Score=158.60  Aligned_cols=200  Identities=19%  Similarity=0.199  Sum_probs=170.2

Q ss_pred             cCCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCC-ChhhhcccCCcEEEcccccCCCcccccCcCCCCE
Q 038338          144 LQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSL-PSSLGRLINLQTLCLDWCQLEDVAAIGQLKKLEI  222 (421)
Q Consensus       144 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~  222 (421)
                      .++++++.+++.++.+  ..+|..+   .+++++|++++|.+..+ +..+..+.+|++|++++|.++.....+.+++|++
T Consensus         7 ~~l~~l~~l~~~~~~l--~~ip~~~---~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~   81 (290)
T 1p9a_G            7 SKVASHLEVNCDKRNL--TALPPDL---PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGT   81 (290)
T ss_dssp             ECSTTCCEEECTTSCC--SSCCSCC---CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCE
T ss_pred             cccCCccEEECCCCCC--CcCCCCC---CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCCCCCCcCCE
Confidence            3778999999999885  6777654   47899999999999885 5679999999999999999988333489999999


Q ss_pred             EEeeCCCCcccchhhcCCCCCCEEeccCCcCCcccchhhhcCCCCCcEEEcccCCCCCccccCCCCcChhhhcCCCCCCE
Q 038338          223 LNLADSNIEQLPLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNSFSGWEKVEGGSNASLVELKRLTKLTT  302 (421)
Q Consensus       223 L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~  302 (421)
                      |++++|++..+|..+..+++|++|++++| .+..++...+..+++|++|++++|.+...+.        ..+..+++|+.
T Consensus        82 L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~--------~~~~~l~~L~~  152 (290)
T 1p9a_G           82 LDLSHNQLQSLPLLGQTLPALTVLDVSFN-RLTSLPLGALRGLGELQELYLKGNELKTLPP--------GLLTPTPKLEK  152 (290)
T ss_dssp             EECCSSCCSSCCCCTTTCTTCCEEECCSS-CCCCCCSSTTTTCTTCCEEECTTSCCCCCCT--------TTTTTCTTCCE
T ss_pred             EECCCCcCCcCchhhccCCCCCEEECCCC-cCcccCHHHHcCCCCCCEEECCCCCCCccCh--------hhcccccCCCE
Confidence            99999999999999999999999999996 5567776668999999999999999887655        55788999999


Q ss_pred             EEEEecCccccCCcc--cccCCceEEEEEcCCccchhhhhhchhhhceeEEEcCCcccc
Q 038338          303 LEIEVRDAEILLPDF--VSVELQRYRIRIGDKLEYEIDQLLVKSEALRLMMLKGLEKVS  359 (421)
Q Consensus       303 L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~  359 (421)
                      |++++|.+..+|...  .+++|+.|+++. +.+. .+|..+..+++|+.|.+++|.+..
T Consensus       153 L~L~~N~l~~l~~~~~~~l~~L~~L~L~~-N~l~-~ip~~~~~~~~L~~l~L~~Np~~C  209 (290)
T 1p9a_G          153 LSLANNNLTELPAGLLNGLENLDTLLLQE-NSLY-TIPKGFFGSHLLPFAFLHGNPWLC  209 (290)
T ss_dssp             EECTTSCCSCCCTTTTTTCTTCCEEECCS-SCCC-CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred             EECCCCcCCccCHHHhcCcCCCCEEECCC-CcCC-ccChhhcccccCCeEEeCCCCccC
Confidence            999999999988765  469999999973 4444 567778888999999999988643

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.78  E-value=1.7e-18  Score=155.93  Aligned_cols=207  Identities=20%  Similarity=0.190  Sum_probs=141.5

Q ss_pred             cccChHHhccCCCccEEEccCCCCCCCCh-hhhcccCCcEEEcccccCCC--cccccCcCCCCEEEeeCCCCcccc-hhh
Q 038338          162 VQISDLFFEGTEELKVLSLIGIHFSSLPS-SLGRLINLQTLCLDWCQLED--VAAIGQLKKLEILNLADSNIEQLP-LEI  237 (421)
Q Consensus       162 ~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~l~~lp-~~~  237 (421)
                      ..+|..+   .++|++|++++|.++.++. .+..+++|++|++++|.+..  +..+.++++|++|++++|.+..++ ..+
T Consensus        20 ~~ip~~l---~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~   96 (276)
T 2z62_A           20 YKIPDNL---PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAF   96 (276)
T ss_dssp             SSCCSSS---CTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTT
T ss_pred             cccCCCC---CCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhh
Confidence            4556543   3578999999999888655 68889999999999998887  457889999999999999988766 458


Q ss_pred             cCCCCCCEEeccCCcCCcccchhhhcCCCCCcEEEcccCCCCCccccCCCCcChhhhcCCCCCCEEEEEecCccccCCc-
Q 038338          238 GQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNSFSGWEKVEGGSNASLVELKRLTKLTTLEIEVRDAEILLPD-  316 (421)
Q Consensus       238 ~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-  316 (421)
                      ..+++|++|++++|.. ..++...++.+++|++|++++|.+....       +...++.+++|++|++++|.+..++.. 
T Consensus        97 ~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~l~~n~l~~~~-------l~~~~~~l~~L~~L~Ls~N~l~~~~~~~  168 (276)
T 2z62_A           97 SGLSSLQKLVAVETNL-ASLENFPIGHLKTLKELNVAHNLIQSFK-------LPEYFSNLTNLEHLDLSSNKIQSIYCTD  168 (276)
T ss_dssp             TTCTTCCEEECTTSCC-CCSTTCCCTTCTTCCEEECCSSCCCCCC-------CCGGGGGCTTCCEEECCSSCCCEECGGG
T ss_pred             cCCccccEEECCCCCc-cccCchhcccCCCCCEEECcCCccceec-------CchhhccCCCCCEEECCCCCCCcCCHHH
Confidence            8899999999988644 4444433788899999999998876532       125688889999999999888766543 


Q ss_pred             c-cccCCc----eEEEEEcCCccchhhhhhchhhhceeEEEcCCcccccccchhHHHHhhhcccEEEeccccC
Q 038338          317 F-VSVELQ----RYRIRIGDKLEYEIDQLLVKSEALRLMMLKGLEKVSILQENDGTKMLLQRTEDLWLVKLEG  384 (421)
Q Consensus       317 ~-~~~~L~----~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  384 (421)
                      + ..++|+    .|+++. +... .++.......+|+.|++++|.+...  .+..+..+ ++|++|++++|+.
T Consensus       169 ~~~l~~L~~l~l~L~ls~-n~l~-~~~~~~~~~~~L~~L~L~~n~l~~~--~~~~~~~l-~~L~~L~l~~N~~  236 (276)
T 2z62_A          169 LRVLHQMPLLNLSLDLSL-NPMN-FIQPGAFKEIRLKELALDTNQLKSV--PDGIFDRL-TSLQKIWLHTNPW  236 (276)
T ss_dssp             GHHHHTCTTCCEEEECCS-SCCC-EECTTSSCSCCEEEEECCSSCCSCC--CTTTTTTC-CSCCEEECCSSCB
T ss_pred             hhhhhhccccceeeecCC-Cccc-ccCccccCCCcccEEECCCCceeec--CHhHhccc-ccccEEEccCCcc
Confidence            2 234455    455542 2222 2222233334677777776663211  11223444 6666777666554

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.78  E-value=1.4e-18  Score=152.94  Aligned_cols=191  Identities=13%  Similarity=0.157  Sum_probs=106.5

Q ss_pred             cCCCeEEEcCCCCCccCCc--ccCCCCccEEEeeecCCCCcccChHHhccCCCccEEEccC-CCCCCCC-hhhhcccCCc
Q 038338          124 RKDPIAISLPQRNIQELPE--RLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIG-IHFSSLP-SSLGRLINLQ  199 (421)
Q Consensus       124 ~~~l~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~lp-~~i~~l~~L~  199 (421)
                      ..+++.|+++++.+..++.  ...+++|+.|++++|.. ...++...|.++++|++|++++ |.++.+| ..+..+++|+
T Consensus        30 ~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~-l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~  108 (239)
T 2xwt_C           30 PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVT-LQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLK  108 (239)
T ss_dssp             CTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSS-CCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCC
T ss_pred             CCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCC-cceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCC
Confidence            3456666666666655543  22566666666666642 2444444445666666666665 5665544 3455566666


Q ss_pred             EEEcccccCCC-cccccCcCCCC---EEEeeCC-CCcccchh-hcCCCCCC-EEeccCCcCCcccchhhhcCCCCCcEEE
Q 038338          200 TLCLDWCQLED-VAAIGQLKKLE---ILNLADS-NIEQLPLE-IGQLTGLR-LLDLTNCWSLQVIAPNVISKLSRLEELY  272 (421)
Q Consensus       200 ~L~l~~~~~~~-~~~~~~l~~L~---~L~l~~~-~l~~lp~~-~~~l~~L~-~L~l~~~~~~~~~~~~~l~~l~~L~~L~  272 (421)
                      +|++++|.++. |. +..+++|+   +|++++| .+..+|.. +..+++|+ +|++++|. +..+|...+.. ++|++|+
T Consensus       109 ~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~-l~~i~~~~~~~-~~L~~L~  185 (239)
T 2xwt_C          109 FLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNG-FTSVQGYAFNG-TKLDAVY  185 (239)
T ss_dssp             EEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCC-CCEECTTTTTT-CEEEEEE
T ss_pred             EEeCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCC-CcccCHhhcCC-CCCCEEE
Confidence            66666666655 33 55555555   6666666 66655543 55666666 66666643 33555543333 5666666


Q ss_pred             cccCC-CCCccccCCCCcChhhhcCC-CCCCEEEEEecCccccCCcccccCCceEEE
Q 038338          273 MDNSF-SGWEKVEGGSNASLVELKRL-TKLTTLEIEVRDAEILLPDFVSVELQRYRI  327 (421)
Q Consensus       273 l~~~~-~~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l  327 (421)
                      +++|. +...+.        ..+..+ ++|+.|++++|.+..+|.. .+++|+.|.+
T Consensus       186 L~~n~~l~~i~~--------~~~~~l~~~L~~L~l~~N~l~~l~~~-~~~~L~~L~l  233 (239)
T 2xwt_C          186 LNKNKYLTVIDK--------DAFGGVYSGPSLLDVSQTSVTALPSK-GLEHLKELIA  233 (239)
T ss_dssp             CTTCTTCCEECT--------TTTTTCSBCCSEEECTTCCCCCCCCT-TCTTCSEEEC
T ss_pred             cCCCCCcccCCH--------HHhhccccCCcEEECCCCccccCChh-HhccCceeec
Confidence            66663 543332        334555 5666666666666555544 3455555544

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.78  E-value=1.4e-19  Score=167.86  Aligned_cols=248  Identities=15%  Similarity=0.144  Sum_probs=183.4

Q ss_pred             CCeEEEcCCCCCccCCccc-CC--CCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCC--CChhhhcccCCcE
Q 038338          126 DPIAISLPQRNIQELPERL-QC--PNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSS--LPSSLGRLINLQT  200 (421)
Q Consensus       126 ~l~~l~l~~~~~~~l~~~~-~~--~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--lp~~i~~l~~L~~  200 (421)
                      ..++++++++.+.  +... .+  ++++.|++.++.+ .+..+. + .++++|++|++++|.+..  +|..+..+++|++
T Consensus        48 ~~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~l-~~~~~~-~-~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~  122 (336)
T 2ast_B           48 LWQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFM-DQPLAE-H-FSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQN  122 (336)
T ss_dssp             TSSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCEE-CSCCCS-C-CCCBCCCEEECTTCEECHHHHHHHHTTBCCCSE
T ss_pred             hheeeccccccCC--HHHHHhhhhccceEEEcCCccc-cccchh-h-ccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCE
Confidence            4678899887763  1112 44  7899999999876 333333 3 468999999999998764  7778889999999


Q ss_pred             EEcccccCCC--cccccCcCCCCEEEeeCC-CCc--ccchhhcCCCCCCEEeccCCcCCcc--cchhhhcCCC-CCcEEE
Q 038338          201 LCLDWCQLED--VAAIGQLKKLEILNLADS-NIE--QLPLEIGQLTGLRLLDLTNCWSLQV--IAPNVISKLS-RLEELY  272 (421)
Q Consensus       201 L~l~~~~~~~--~~~~~~l~~L~~L~l~~~-~l~--~lp~~~~~l~~L~~L~l~~~~~~~~--~~~~~l~~l~-~L~~L~  272 (421)
                      |++++|.+.+  +..++++++|++|++++| .++  .++..+..+++|++|++++|..+..  ++. .+..++ +|++|+
T Consensus       123 L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~-~~~~l~~~L~~L~  201 (336)
T 2ast_B          123 LSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQV-AVAHVSETITQLN  201 (336)
T ss_dssp             EECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHH-HHHHSCTTCCEEE
T ss_pred             EeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHH-HHHhcccCCCEEE
Confidence            9999999876  788899999999999999 677  4777788999999999999844443  343 378899 999999


Q ss_pred             cccCC--CCCccccCCCCcChhhhcCCCCCCEEEEEecC-cc-ccCCcc-cccCCceEEEEEcCCccchhhhhhchhhhc
Q 038338          273 MDNSF--SGWEKVEGGSNASLVELKRLTKLTTLEIEVRD-AE-ILLPDF-VSVELQRYRIRIGDKLEYEIDQLLVKSEAL  347 (421)
Q Consensus       273 l~~~~--~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~-~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L  347 (421)
                      +++|.  ++..       .+...+..+++|++|++++|. ++ ..+..+ .+++|+.|++..+..........++.+++|
T Consensus       202 l~~~~~~~~~~-------~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L  274 (336)
T 2ast_B          202 LSGYRKNLQKS-------DLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTL  274 (336)
T ss_dssp             CCSCGGGSCHH-------HHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTC
T ss_pred             eCCCcccCCHH-------HHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCC
Confidence            99983  3311       223567789999999999998 43 444444 559999999976654443334467889999


Q ss_pred             eeEEEcCCcccccccchhHHHHhhhcccEEEeccccCcccccccc
Q 038338          348 RLMMLKGLEKVSILQENDGTKMLLQRTEDLWLVKLEGVQNVVHEL  392 (421)
Q Consensus       348 ~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~  392 (421)
                      +.|++++| +     ....+..+...|+.|++++|...+..+...
T Consensus       275 ~~L~l~~~-i-----~~~~~~~l~~~l~~L~l~~n~l~~~~~~~~  313 (336)
T 2ast_B          275 KTLQVFGI-V-----PDGTLQLLKEALPHLQINCSHFTTIARPTI  313 (336)
T ss_dssp             CEEECTTS-S-----CTTCHHHHHHHSTTSEESCCCSCCTTCSSC
T ss_pred             CEEeccCc-c-----CHHHHHHHHhhCcceEEecccCccccCCcc
Confidence            99999996 1     122344443557888888887766666544

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.77  E-value=9.9e-18  Score=151.89  Aligned_cols=177  Identities=22%  Similarity=0.274  Sum_probs=151.3

Q ss_pred             ccCccCCCeEEEcCCCCCccCCcccCCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCCChhhhcccCCc
Q 038338          120 EETIRKDPIAISLPQRNIQELPERLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPSSLGRLINLQ  199 (421)
Q Consensus       120 ~~~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~  199 (421)
                      ....+++++.++++++.+..++....+++|+.|++++|.+  ..++.  +.++++|++|++++|.++.+|. ++.+++|+
T Consensus        41 ~~~~l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l--~~~~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~  115 (291)
T 1h6t_A           41 TQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKL--TDIKP--LANLKNLGWLFLDENKVKDLSS-LKDLKKLK  115 (291)
T ss_dssp             CHHHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCC--CCCGG--GTTCTTCCEEECCSSCCCCGGG-GTTCTTCC
T ss_pred             chhhcCcccEEEccCCCcccChhHhcCCCCCEEEccCCcc--CCCcc--cccCCCCCEEECCCCcCCCChh-hccCCCCC
Confidence            3456788999999999998888777999999999999986  44554  5889999999999999988765 89999999


Q ss_pred             EEEcccccCCCcccccCcCCCCEEEeeCCCCcccchhhcCCCCCCEEeccCCcCCcccchhhhcCCCCCcEEEcccCCCC
Q 038338          200 TLCLDWCQLEDVAAIGQLKKLEILNLADSNIEQLPLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNSFSG  279 (421)
Q Consensus       200 ~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  279 (421)
                      +|++++|.+...+.+..+++|++|++++|++..+ ..+..+++|++|++++| .+..++.  +..+++|+.|++++|.+.
T Consensus       116 ~L~L~~n~i~~~~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N-~l~~~~~--l~~l~~L~~L~L~~N~i~  191 (291)
T 1h6t_A          116 SLSLEHNGISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDN-QISDIVP--LAGLTKLQNLYLSKNHIS  191 (291)
T ss_dssp             EEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSS-CCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred             EEECCCCcCCCChhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCC-ccccchh--hcCCCccCEEECCCCcCC
Confidence            9999999998877889999999999999999988 57899999999999997 4555655  789999999999999877


Q ss_pred             CccccCCCCcChhhhcCCCCCCEEEEEecCccccCC
Q 038338          280 WEKVEGGSNASLVELKRLTKLTTLEIEVRDAEILLP  315 (421)
Q Consensus       280 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~  315 (421)
                      ..          ..+..+++|+.|++++|.+...|.
T Consensus       192 ~l----------~~l~~l~~L~~L~l~~n~i~~~~~  217 (291)
T 1h6t_A          192 DL----------RALAGLKNLDVLELFSQECLNKPI  217 (291)
T ss_dssp             BC----------GGGTTCTTCSEEEEEEEEEECCCE
T ss_pred             CC----------hhhccCCCCCEEECcCCcccCCcc
Confidence            54          348889999999999998765543

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.77  E-value=4e-19  Score=168.04  Aligned_cols=257  Identities=16%  Similarity=0.122  Sum_probs=161.1

Q ss_pred             cCccCCCeEEEcCCCCCcc-----CCc-ccCCCCccEEEeeecCCC--CcccChHH------hccCCCccEEEccCCCCC
Q 038338          121 ETIRKDPIAISLPQRNIQE-----LPE-RLQCPNLQLFLLFRQGYG--PVQISDLF------FEGTEELKVLSLIGIHFS  186 (421)
Q Consensus       121 ~~~~~~l~~l~l~~~~~~~-----l~~-~~~~~~L~~L~l~~~~~~--~~~~~~~~------~~~l~~L~~L~l~~~~~~  186 (421)
                      +..++++++|++++|.+..     ++. ...+++|+.|++++|...  .+.+|..+      +..+++|++|++++|.+.
T Consensus        28 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~  107 (386)
T 2ca6_A           28 LLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFG  107 (386)
T ss_dssp             HHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCC
T ss_pred             HhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCC
Confidence            3456678888888887733     222 226788888888876430  22333332      356788888888888876


Q ss_pred             C-----CChhhhcccCCcEEEcccccCCC--ccc----ccCc---------CCCCEEEeeCCCCc--ccc---hhhcCCC
Q 038338          187 S-----LPSSLGRLINLQTLCLDWCQLED--VAA----IGQL---------KKLEILNLADSNIE--QLP---LEIGQLT  241 (421)
Q Consensus       187 ~-----lp~~i~~l~~L~~L~l~~~~~~~--~~~----~~~l---------~~L~~L~l~~~~l~--~lp---~~~~~l~  241 (421)
                      .     +|..+..+++|++|++++|.+..  +..    +..+         ++|++|++++|++.  .+|   ..+..++
T Consensus       108 ~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~  187 (386)
T 2ca6_A          108 PTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHR  187 (386)
T ss_dssp             TTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCC
Confidence            5     56677788888888888888764  333    3333         78888888888775  444   4566788


Q ss_pred             CCCEEeccCCcCCcc----cchhhhcCCCCCcEEEcccCCCCCccccCCCCcChhhhcCCCCCCEEEEEecCccc-----
Q 038338          242 GLRLLDLTNCWSLQV----IAPNVISKLSRLEELYMDNSFSGWEKVEGGSNASLVELKRLTKLTTLEIEVRDAEI-----  312 (421)
Q Consensus       242 ~L~~L~l~~~~~~~~----~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-----  312 (421)
                      +|++|++++|.....    +.+..+..+++|++|++++|.++...    ...++..+..+++|+.|++++|.++.     
T Consensus       188 ~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g----~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~  263 (386)
T 2ca6_A          188 LLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLG----SSALAIALKSWPNLRELGLNDCLLSARGAAA  263 (386)
T ss_dssp             TCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHH----HHHHHHHGGGCTTCCEEECTTCCCCHHHHHH
T ss_pred             CcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHH----HHHHHHHHccCCCcCEEECCCCCCchhhHHH
Confidence            888888888643311    22213667888888888887764211    01223567777888888888887653     


Q ss_pred             cCCcc---cccCCceEEEEEcCCccc----hhhhhh-chhhhceeEEEcCCcccccccchhHHHHhhhcccEEEeccc
Q 038338          313 LLPDF---VSVELQRYRIRIGDKLEY----EIDQLL-VKSEALRLMMLKGLEKVSILQENDGTKMLLQRTEDLWLVKL  382 (421)
Q Consensus       313 ~~~~~---~~~~L~~L~l~~~~~~~~----~~~~~~-~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~  382 (421)
                      ++..+   .+++|+.|+++.+ .+..    .+|..+ .++++|++|++++|.+.........+...++.++.+.+...
T Consensus       264 l~~~l~~~~~~~L~~L~L~~n-~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~~~~~l~~~l~~~~~~~l~~~  340 (386)
T 2ca6_A          264 VVDAFSKLENIGLQTLRLQYN-EIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGELDEL  340 (386)
T ss_dssp             HHHHHHTCSSCCCCEEECCSS-CCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSHHHHHHHHHHHHHTCCEECCC
T ss_pred             HHHHHhhccCCCeEEEECcCC-cCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchhHHHHHHHHhhhcCcchhhhc
Confidence            23333   1477777777633 3333    255555 45677778887777754433323455555566666555443

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.76  E-value=4.1e-19  Score=162.72  Aligned_cols=198  Identities=16%  Similarity=0.128  Sum_probs=113.5

Q ss_pred             CCCccEEEccCCCCCC-CChhh--hcccCCcEEEcccccCCC--c----ccccCcCCCCEEEeeCCCCcccc-hhhcCCC
Q 038338          172 TEELKVLSLIGIHFSS-LPSSL--GRLINLQTLCLDWCQLED--V----AAIGQLKKLEILNLADSNIEQLP-LEIGQLT  241 (421)
Q Consensus       172 l~~L~~L~l~~~~~~~-lp~~i--~~l~~L~~L~l~~~~~~~--~----~~~~~l~~L~~L~l~~~~l~~lp-~~~~~l~  241 (421)
                      +++|++|++++|.+.. .|..+  ..+.+|++|++++|.+..  +    ..+..+++|++|++++|++..++ ..++.++
T Consensus        90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~  169 (310)
T 4glp_A           90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP  169 (310)
T ss_dssp             HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred             cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence            3557777777776654 44444  666777777777776654  2    23345667777777777766554 3466677


Q ss_pred             CCCEEeccCCcCCcc--cch-hhhcCCCCCcEEEcccCCCCCccccCCCCcChh-hhcCCCCCCEEEEEecCcccc-CCc
Q 038338          242 GLRLLDLTNCWSLQV--IAP-NVISKLSRLEELYMDNSFSGWEKVEGGSNASLV-ELKRLTKLTTLEIEVRDAEIL-LPD  316 (421)
Q Consensus       242 ~L~~L~l~~~~~~~~--~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~-~~~  316 (421)
                      +|++|++++|...+.  ++. ..++.+++|++|++++|.++....      ... .++.+++|++|++++|.+... |..
T Consensus       170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~------~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~  243 (310)
T 4glp_A          170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTG------VCAALAAAGVQPHSLDLSHNSLRATVNPS  243 (310)
T ss_dssp             TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHH------HHHHHHHHTCCCSSEECTTSCCCCCCCSC
T ss_pred             CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHH------HHHHHHhcCCCCCEEECCCCCCCccchhh
Confidence            777777777643332  211 112466677777777766643221      011 235666777777777776544 433


Q ss_pred             c-cc---cCCceEEEEEcCCccchhhhhhchhhhceeEEEcCCcccccccchhHHHHhhhcccEEEeccccC
Q 038338          317 F-VS---VELQRYRIRIGDKLEYEIDQLLVKSEALRLMMLKGLEKVSILQENDGTKMLLQRTEDLWLVKLEG  384 (421)
Q Consensus       317 ~-~~---~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  384 (421)
                      + .+   ++|+.|+++. +.+. .+|..+.  ++|+.|++++|.+... +.   +..+ ++|++|++++|+.
T Consensus       244 ~~~~~~~~~L~~L~Ls~-N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~---~~~l-~~L~~L~L~~N~l  306 (310)
T 4glp_A          244 APRCMWSSALNSLNLSF-AGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ---PDEL-PEVDNLTLDGNPF  306 (310)
T ss_dssp             CSSCCCCTTCCCEECCS-SCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC---TTSC-CCCSCEECSSTTT
T ss_pred             HHhccCcCcCCEEECCC-CCCC-chhhhhc--CCCCEEECCCCcCCCC-ch---hhhC-CCccEEECcCCCC
Confidence            3 22   5677777753 3333 3444443  6777777777764321 11   2333 7777777777764

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.76  E-value=1.7e-18  Score=152.38  Aligned_cols=204  Identities=15%  Similarity=0.129  Sum_probs=127.4

Q ss_pred             CccCCcccCCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCC-CCCCCh-hhhcccCCcEEEccc-ccCCC--c
Q 038338          137 IQELPERLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIH-FSSLPS-SLGRLINLQTLCLDW-CQLED--V  211 (421)
Q Consensus       137 ~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~lp~-~i~~l~~L~~L~l~~-~~~~~--~  211 (421)
                      +..+|.  -.++++.|++++|.+  ..++...|..+++|++|++++|. ++.++. .+..+++|++|++++ |.++.  +
T Consensus        23 l~~ip~--~~~~l~~L~l~~n~l--~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~   98 (239)
T 2xwt_C           23 IQRIPS--LPPSTQTLKLIETHL--RTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDP   98 (239)
T ss_dssp             CSSCCC--CCTTCCEEEEESCCC--SEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECT
T ss_pred             ccccCC--CCCcccEEEEeCCcc--eEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCH
Confidence            455555  234777788877775  45555555777778888888775 766554 567777777777777 67766  3


Q ss_pred             ccccCcCCCCEEEeeCCCCcccchhhcCCCCCC---EEeccCCcCCcccchhhhcCCCCCc-EEEcccCCCCCccccCCC
Q 038338          212 AAIGQLKKLEILNLADSNIEQLPLEIGQLTGLR---LLDLTNCWSLQVIAPNVISKLSRLE-ELYMDNSFSGWEKVEGGS  287 (421)
Q Consensus       212 ~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~---~L~l~~~~~~~~~~~~~l~~l~~L~-~L~l~~~~~~~~~~~~~~  287 (421)
                      ..+.++++|++|++++|+++.+|. +..+++|+   +|++++|..+..++...+..+++|+ +|++++|.+...+.    
T Consensus        99 ~~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~----  173 (239)
T 2xwt_C           99 DALKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQG----  173 (239)
T ss_dssp             TSEECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECT----
T ss_pred             HHhCCCCCCCEEeCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCH----
Confidence            567777777777777777777765 66666666   7777775455566655566677777 77777666553322    


Q ss_pred             CcChhhhcCCCCCCEEEEEecC-ccccCCcccccCCceEEEEEcCCccchhhhhhchh-hhceeEEEcCCcccccccchh
Q 038338          288 NASLVELKRLTKLTTLEIEVRD-AEILLPDFVSVELQRYRIRIGDKLEYEIDQLLVKS-EALRLMMLKGLEKVSILQEND  365 (421)
Q Consensus       288 ~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l-~~L~~L~l~~~~~~~~~~~~~  365 (421)
                          ..+.. ++|+.|++++|. ++.++.                       ..+..+ ++|+.|++++|.+..   .|.
T Consensus       174 ----~~~~~-~~L~~L~L~~n~~l~~i~~-----------------------~~~~~l~~~L~~L~l~~N~l~~---l~~  222 (239)
T 2xwt_C          174 ----YAFNG-TKLDAVYLNKNKYLTVIDK-----------------------DAFGGVYSGPSLLDVSQTSVTA---LPS  222 (239)
T ss_dssp             ----TTTTT-CEEEEEECTTCTTCCEECT-----------------------TTTTTCSBCCSEEECTTCCCCC---CCC
T ss_pred             ----hhcCC-CCCCEEEcCCCCCcccCCH-----------------------HHhhccccCCcEEECCCCcccc---CCh
Confidence                12222 456666665553 444432                       234555 667777777766421   222


Q ss_pred             HHHHhhhcccEEEecccc
Q 038338          366 GTKMLLQRTEDLWLVKLE  383 (421)
Q Consensus       366 ~~~~~~~~L~~L~l~~~~  383 (421)
                      .   .+++|+.|++.++.
T Consensus       223 ~---~~~~L~~L~l~~~~  237 (239)
T 2xwt_C          223 K---GLEHLKELIARNTW  237 (239)
T ss_dssp             T---TCTTCSEEECTTC-
T ss_pred             h---HhccCceeeccCcc
Confidence            2   23677777776654

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.76  E-value=6.7e-19  Score=163.26  Aligned_cols=249  Identities=15%  Similarity=0.095  Sum_probs=184.5

Q ss_pred             CccEEEeeecCCCCcccChHHhccC--CCccEEEccCCCCCCCChhhhcccCCcEEEcccccCCC---cccccCcCCCCE
Q 038338          148 NLQLFLLFRQGYGPVQISDLFFEGT--EELKVLSLIGIHFSSLPSSLGRLINLQTLCLDWCQLED---VAAIGQLKKLEI  222 (421)
Q Consensus       148 ~L~~L~l~~~~~~~~~~~~~~~~~l--~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~---~~~~~~l~~L~~  222 (421)
                      .++.++++++.+ .    ...+..+  +++++|+++++.+...+..+..+++|++|++++|.+..   +..+..+++|++
T Consensus        48 ~~~~l~l~~~~~-~----~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~  122 (336)
T 2ast_B           48 LWQTLDLTGKNL-H----PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQN  122 (336)
T ss_dssp             TSSEEECTTCBC-C----HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSE
T ss_pred             hheeeccccccC-C----HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCE
Confidence            478899988765 2    2334556  89999999999988866667889999999999999764   677899999999


Q ss_pred             EEeeCCCCc-ccchhhcCCCCCCEEeccCCcCCcc--cchhhhcCCCCCcEEEcccC-CCCCccccCCCCcChhhhcCCC
Q 038338          223 LNLADSNIE-QLPLEIGQLTGLRLLDLTNCWSLQV--IAPNVISKLSRLEELYMDNS-FSGWEKVEGGSNASLVELKRLT  298 (421)
Q Consensus       223 L~l~~~~l~-~lp~~~~~l~~L~~L~l~~~~~~~~--~~~~~l~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~~l~~l~  298 (421)
                      |++++|.+. ..|..+..+++|++|++++|..+..  ++. .+..+++|++|++++| .++...       ....+..++
T Consensus       123 L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~-~~~~~~~L~~L~l~~~~~l~~~~-------~~~~~~~l~  194 (336)
T 2ast_B          123 LSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQT-LLSSCSRLDELNLSWCFDFTEKH-------VQVAVAHVS  194 (336)
T ss_dssp             EECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHH-HHHHCTTCCEEECCCCTTCCHHH-------HHHHHHHSC
T ss_pred             EeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHH-HHhcCCCCCEEcCCCCCCcChHH-------HHHHHHhcc
Confidence            999999988 6777899999999999999855553  444 3788999999999998 766431       125678899


Q ss_pred             -CCCEEEEEecC--c--cccCCcc-cccCCceEEEEEcCCccchhhhhhchhhhceeEEEcCCcccccccchhHHHHhhh
Q 038338          299 -KLTTLEIEVRD--A--EILLPDF-VSVELQRYRIRIGDKLEYEIDQLLVKSEALRLMMLKGLEKVSILQENDGTKMLLQ  372 (421)
Q Consensus       299 -~L~~L~l~~~~--~--~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~  372 (421)
                       +|++|++++|.  +  ..++..+ .+++|+.|++..+.......+..+..+++|+.|++++|. .........+.++ +
T Consensus       195 ~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~l~~~-~  272 (336)
T 2ast_B          195 ETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCY-DIIPETLLELGEI-P  272 (336)
T ss_dssp             TTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCT-TCCGGGGGGGGGC-T
T ss_pred             cCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCC-CCCHHHHHHHhcC-C
Confidence             99999999985  3  3455554 569999999986654555667788999999999999985 1222222346665 9


Q ss_pred             cccEEEeccccCcccccccccccCCCCCccEEEEeecCceeeeccc
Q 038338          373 RTEDLWLVKLEGVQNVVHELDDGEGFPRLKHLHVESCYEIVHIVGS  418 (421)
Q Consensus       373 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~i~~c~~L~~l~~~  418 (421)
                      +|++|++++| ........+  .   .+|+.|++. |+++..+.++
T Consensus       273 ~L~~L~l~~~-i~~~~~~~l--~---~~l~~L~l~-~n~l~~~~~~  311 (336)
T 2ast_B          273 TLKTLQVFGI-VPDGTLQLL--K---EALPHLQIN-CSHFTTIARP  311 (336)
T ss_dssp             TCCEEECTTS-SCTTCHHHH--H---HHSTTSEES-CCCSCCTTCS
T ss_pred             CCCEEeccCc-cCHHHHHHH--H---hhCcceEEe-cccCccccCC
Confidence            9999999998 222111111  1   224445564 4567665543

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.76  E-value=1.3e-17  Score=147.96  Aligned_cols=176  Identities=23%  Similarity=0.313  Sum_probs=140.2

Q ss_pred             CCCeEEEcCCCCCccCCcccCCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCCCh-hhhcccCCcEEEc
Q 038338          125 KDPIAISLPQRNIQELPERLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPS-SLGRLINLQTLCL  203 (421)
Q Consensus       125 ~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~l  203 (421)
                      ...++++++++.+..+|.... ++++.|++++|.+  ..++...+.++++|++|++++|.++.++. .+..+++|++|++
T Consensus        14 ~~~~~l~~~~~~l~~~p~~~~-~~l~~L~L~~n~l--~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L   90 (251)
T 3m19_A           14 EGKKEVDCQGKSLDSVPSGIP-ADTEKLDLQSTGL--ATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL   90 (251)
T ss_dssp             GGGTEEECTTCCCSSCCSCCC-TTCCEEECTTSCC--CCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCeEEecCCCCccccCCCCC-CCCCEEEccCCCc--CccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence            345678888888888876544 6889999999886  44555446888999999999998887544 4788999999999


Q ss_pred             ccccCCC--cccccCcCCCCEEEeeCCCCcccchh-hcCCCCCCEEeccCCcCCcccchhhhcCCCCCcEEEcccCCCCC
Q 038338          204 DWCQLED--VAAIGQLKKLEILNLADSNIEQLPLE-IGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNSFSGW  280 (421)
Q Consensus       204 ~~~~~~~--~~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  280 (421)
                      ++|.+..  +..+..+++|++|++++|+++.+|.. +..+++|++|++++| .+..++...++.+++|++|++++|.+..
T Consensus        91 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~  169 (251)
T 3m19_A           91 ANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTN-QLQSIPAGAFDKLTNLQTLSLSTNQLQS  169 (251)
T ss_dssp             TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred             CCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCC-cCCccCHHHcCcCcCCCEEECCCCcCCc
Confidence            9999888  46678899999999999999888776 578999999999986 5556666557888999999999988876


Q ss_pred             ccccCCCCcChhhhcCCCCCCEEEEEecCccc
Q 038338          281 EKVEGGSNASLVELKRLTKLTTLEIEVRDAEI  312 (421)
Q Consensus       281 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  312 (421)
                      .++        ..+..+++|+.|++++|.+..
T Consensus       170 ~~~--------~~~~~l~~L~~L~l~~N~~~c  193 (251)
T 3m19_A          170 VPH--------GAFDRLGKLQTITLFGNQFDC  193 (251)
T ss_dssp             CCT--------TTTTTCTTCCEEECCSCCBCT
T ss_pred             cCH--------HHHhCCCCCCEEEeeCCceeC
Confidence            654        457788889999998888753

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.75  E-value=4.3e-19  Score=167.82  Aligned_cols=264  Identities=13%  Similarity=0.051  Sum_probs=176.7

Q ss_pred             ccCCccc-CCCCccEEEeeecCCCCcccCh---HHhccCCCccEEEccCCCCCC----CChhh-------hcccCCcEEE
Q 038338          138 QELPERL-QCPNLQLFLLFRQGYGPVQISD---LFFEGTEELKVLSLIGIHFSS----LPSSL-------GRLINLQTLC  202 (421)
Q Consensus       138 ~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~---~~~~~l~~L~~L~l~~~~~~~----lp~~i-------~~l~~L~~L~  202 (421)
                      ..+.... .+++|+.|++++|.+ ....+.   ..+..+++|++|++++|.+..    +|..+       ..+++|++|+
T Consensus        22 ~~l~~~l~~~~~L~~L~L~~n~i-~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~  100 (386)
T 2ca6_A           22 KSVFAVLLEDDSVKEIVLSGNTI-GTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVR  100 (386)
T ss_dssp             HTTSHHHHHCSCCCEEECTTSEE-CHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEE
T ss_pred             HHHHHHHhcCCCccEEECCCCCC-CHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEE
Confidence            3444333 778899999999876 332222   224678999999999876543    45444       6788999999


Q ss_pred             cccccCCC------cccccCcCCCCEEEeeCCCCc-----ccchhhcCC---------CCCCEEeccCCcCC-cccch--
Q 038338          203 LDWCQLED------VAAIGQLKKLEILNLADSNIE-----QLPLEIGQL---------TGLRLLDLTNCWSL-QVIAP--  259 (421)
Q Consensus       203 l~~~~~~~------~~~~~~l~~L~~L~l~~~~l~-----~lp~~~~~l---------~~L~~L~l~~~~~~-~~~~~--  259 (421)
                      +++|.+..      +..+.++++|++|++++|.+.     .++..+..+         ++|++|++++|... ..++.  
T Consensus       101 Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~  180 (386)
T 2ca6_A          101 LSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWA  180 (386)
T ss_dssp             CCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHH
T ss_pred             CCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHH
Confidence            99998765      356788899999999999886     233344445         89999999987554 23331  


Q ss_pred             hhhcCCCCCcEEEcccCCCCCccccCCCCcChh-hhcCCCCCCEEEEEecCc-----cccCCcc-cccCCceEEEEEcCC
Q 038338          260 NVISKLSRLEELYMDNSFSGWEKVEGGSNASLV-ELKRLTKLTTLEIEVRDA-----EILLPDF-VSVELQRYRIRIGDK  332 (421)
Q Consensus       260 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~-----~~~~~~~-~~~~L~~L~l~~~~~  332 (421)
                      ..+..+++|++|++++|.+.....    ..... .+..+++|+.|++++|.+     ..+|..+ .+++|+.|+++.+. 
T Consensus       181 ~~l~~~~~L~~L~L~~n~l~~~g~----~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~-  255 (386)
T 2ca6_A          181 KTFQSHRLLHTVKMVQNGIRPEGI----EHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCL-  255 (386)
T ss_dssp             HHHHHCTTCCEEECCSSCCCHHHH----HHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCC-
T ss_pred             HHHHhCCCcCEEECcCCCCCHhHH----HHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCC-
Confidence            236688899999999987763210    01123 677889999999999987     4455554 44889999987443 


Q ss_pred             ccch----hhhhhc--hhhhceeEEEcCCccccc--ccchhHH-HHhhhcccEEEeccccCccccc--ccccccCCCCCc
Q 038338          333 LEYE----IDQLLV--KSEALRLMMLKGLEKVSI--LQENDGT-KMLLQRTEDLWLVKLEGVQNVV--HELDDGEGFPRL  401 (421)
Q Consensus       333 ~~~~----~~~~~~--~l~~L~~L~l~~~~~~~~--~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~--~~~~~~~~~~~L  401 (421)
                      +...    ++..+.  .+++|+.|++++|.+...  ..++..+ .++ ++|++|++++|+.....+  ..+  ...++++
T Consensus       256 i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l-~~L~~L~l~~N~l~~~~~~~~~l--~~~l~~~  332 (386)
T 2ca6_A          256 LSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKM-PDLLFLELNGNRFSEEDDVVDEI--REVFSTR  332 (386)
T ss_dssp             CCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHC-TTCCEEECTTSBSCTTSHHHHHH--HHHHHHH
T ss_pred             CchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcC-CCceEEEccCCcCCcchhHHHHH--HHHhhhc
Confidence            3322    345553  388899999999875321  1345555 344 899999999888765442  222  2356666


Q ss_pred             cEEEEeecC
Q 038338          402 KHLHVESCY  410 (421)
Q Consensus       402 ~~L~i~~c~  410 (421)
                      +.+++....
T Consensus       333 ~~~~l~~~d  341 (386)
T 2ca6_A          333 GRGELDELD  341 (386)
T ss_dssp             TCCEECCCC
T ss_pred             Ccchhhhcc
Confidence            666665443

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.74  E-value=3.8e-18  Score=170.54  Aligned_cols=82  Identities=11%  Similarity=0.141  Sum_probs=51.5

Q ss_pred             ccCCCeEEEcCCCCCcc-----CCccc-CCCCccEEEeeecCCCC---cccChHHhccCCCccEEEccCCCCCCCChhhh
Q 038338          123 IRKDPIAISLPQRNIQE-----LPERL-QCPNLQLFLLFRQGYGP---VQISDLFFEGTEELKVLSLIGIHFSSLPSSLG  193 (421)
Q Consensus       123 ~~~~l~~l~l~~~~~~~-----l~~~~-~~~~L~~L~l~~~~~~~---~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~  193 (421)
                      .++++++|++++|.+..     ++... .+++|+.|+++++.. .   ......++.++++|++|++++|.+..+|..+.
T Consensus       162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~-~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~  240 (592)
T 3ogk_B          162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEF-AKISPKDLETIARNCRSLVSVKVGDFEILELVGFFK  240 (592)
T ss_dssp             HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCC-SSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHH
T ss_pred             hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCC-CccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHh
Confidence            56778888888776522     22222 677788888877765 2   01112234567888888888877666666666


Q ss_pred             cccCCcEEEccc
Q 038338          194 RLINLQTLCLDW  205 (421)
Q Consensus       194 ~l~~L~~L~l~~  205 (421)
                      .+++|++|+++.
T Consensus       241 ~~~~L~~L~l~~  252 (592)
T 3ogk_B          241 AAANLEEFCGGS  252 (592)
T ss_dssp             HCTTCCEEEECB
T ss_pred             hhhHHHhhcccc
Confidence            666666666653

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.73  E-value=8.6e-18  Score=167.96  Aligned_cols=271  Identities=14%  Similarity=0.092  Sum_probs=161.2

Q ss_pred             ccCCCeEEEcCCCCCcc-----CCccc-CCCCccEEEeeecCCCCcccChHHhccCCCccEEEccC--------------
Q 038338          123 IRKDPIAISLPQRNIQE-----LPERL-QCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIG--------------  182 (421)
Q Consensus       123 ~~~~l~~l~l~~~~~~~-----l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~--------------  182 (421)
                      .+++++.|+++++.+..     ++... ++++|+.|++.+|..  ..++. .+..+++|+.|+++.              
T Consensus       190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~--~~l~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~l  266 (592)
T 3ogk_B          190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEI--LELVG-FFKAAANLEEFCGGSLNEDIGMPEKYMNL  266 (592)
T ss_dssp             HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBG--GGGHH-HHHHCTTCCEEEECBCCCCTTCTTSSSCC
T ss_pred             cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccH--HHHHH-HHhhhhHHHhhcccccccccchHHHHHHh
Confidence            46788888888877642     22222 678888888888764  33443 345666666666653              


Q ss_pred             -------------CCCCCCChhhhcccCCcEEEcccccCCC--c-ccccCcCCCCEEEeeCCCCc--ccchhhcCCCCCC
Q 038338          183 -------------IHFSSLPSSLGRLINLQTLCLDWCQLED--V-AAIGQLKKLEILNLADSNIE--QLPLEIGQLTGLR  244 (421)
Q Consensus       183 -------------~~~~~lp~~i~~l~~L~~L~l~~~~~~~--~-~~~~~l~~L~~L~l~~~~l~--~lp~~~~~l~~L~  244 (421)
                                   +....+|..+..+++|++|++++|.+..  + ..+..+++|++|++++ .+.  .++.....+++|+
T Consensus       267 ~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~-~~~~~~l~~~~~~~~~L~  345 (592)
T 3ogk_B          267 VFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRN-VIGDRGLEVLAQYCKQLK  345 (592)
T ss_dssp             CCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEG-GGHHHHHHHHHHHCTTCC
T ss_pred             hccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccC-ccCHHHHHHHHHhCCCCC
Confidence                         2223345555666777777777777554  2 3356677777777773 232  3333345677777


Q ss_pred             EEeccC----------CcCCcccc-hhhhcCCCCCcEEEcccCCCCCccccCCCCcChhhhcC-CCCCCEEEEEe----c
Q 038338          245 LLDLTN----------CWSLQVIA-PNVISKLSRLEELYMDNSFSGWEKVEGGSNASLVELKR-LTKLTTLEIEV----R  308 (421)
Q Consensus       245 ~L~l~~----------~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~-l~~L~~L~l~~----~  308 (421)
                      +|++++          |+.+.... ......+++|++|+++.+.++....        ..++. +++|+.|++.+    +
T Consensus       346 ~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~--------~~l~~~~~~L~~L~l~~~~~~n  417 (592)
T 3ogk_B          346 RLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESL--------ESIGTYLKNLCDFRLVLLDREE  417 (592)
T ss_dssp             EEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHH--------HHHHHHCCSCCEEEEEECSCCS
T ss_pred             EEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHH--------HHHHhhCCCCcEEEEeecCCCc
Confidence            777774          44443321 1223457777777776666554332        44444 77888888863    3


Q ss_pred             CccccCCc------c-cccCCceEEEEEcCC-ccchhhhhhc-hhhhceeEEEcCCcccccccchhHHHHhhhcccEEEe
Q 038338          309 DAEILLPD------F-VSVELQRYRIRIGDK-LEYEIDQLLV-KSEALRLMMLKGLEKVSILQENDGTKMLLQRTEDLWL  379 (421)
Q Consensus       309 ~~~~~~~~------~-~~~~L~~L~l~~~~~-~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l  379 (421)
                      .++..|..      + .+++|+.|+++.|.. .....+..++ .+++|+.|++++|.+. ....+..+..+ ++|++|++
T Consensus       418 ~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~~~~-~~L~~L~l  495 (592)
T 3ogk_B          418 RITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGES-DEGLMEFSRGC-PNLQKLEM  495 (592)
T ss_dssp             CCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSS-HHHHHHHHTCC-TTCCEEEE
T ss_pred             cccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCC-HHHHHHHHhcC-cccCeeec
Confidence            44443321      2 357888888865432 3333334443 3778888888887632 12233334444 78888888


Q ss_pred             ccccCccc-ccccccccCCCCCccEEEEeecC
Q 038338          380 VKLEGVQN-VVHELDDGEGFPRLKHLHVESCY  410 (421)
Q Consensus       380 ~~~~~~~~-~~~~~~~~~~~~~L~~L~i~~c~  410 (421)
                      ++|..... ++...   ..+++|+.|++++|.
T Consensus       496 ~~n~l~~~~~~~~~---~~l~~L~~L~ls~n~  524 (592)
T 3ogk_B          496 RGCCFSERAIAAAV---TKLPSLRYLWVQGYR  524 (592)
T ss_dssp             ESCCCBHHHHHHHH---HHCSSCCEEEEESCB
T ss_pred             cCCCCcHHHHHHHH---HhcCccCeeECcCCc
Confidence            88874322 22222   367888888888886

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.72  E-value=8.4e-17  Score=145.79  Aligned_cols=181  Identities=20%  Similarity=0.229  Sum_probs=142.4

Q ss_pred             cCCCCCccCCcccCCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCCChhhhcccCCcEEEcccccCCCc
Q 038338          132 LPQRNIQELPERLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPSSLGRLINLQTLCLDWCQLEDV  211 (421)
Q Consensus       132 l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~  211 (421)
                      +....+..+.....+++|+.|++++|.+  ..++.  +..+++|++|++++|.++.++. +..+++|++|++++|.+..+
T Consensus        31 l~~~~~~~~~~~~~l~~L~~L~l~~~~i--~~~~~--~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~  105 (291)
T 1h6t_A           31 LKKKSVTDAVTQNELNSIDQIIANNSDI--KSVQG--IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDL  105 (291)
T ss_dssp             TTCSCTTSEECHHHHHTCCEEECTTSCC--CCCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCG
T ss_pred             hcCCCcccccchhhcCcccEEEccCCCc--ccChh--HhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCC
Confidence            3344443333344778899999998875  45544  4778999999999999988877 88899999999999998886


Q ss_pred             ccccCcCCCCEEEeeCCCCcccchhhcCCCCCCEEeccCCcCCcccchhhhcCCCCCcEEEcccCCCCCccccCCCCcCh
Q 038338          212 AAIGQLKKLEILNLADSNIEQLPLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNSFSGWEKVEGGSNASL  291 (421)
Q Consensus       212 ~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~  291 (421)
                      +.+..+++|++|++++|++..+ +.+..+++|++|++++|. +..++.  ++.+++|++|++++|.+....         
T Consensus       106 ~~l~~l~~L~~L~L~~n~i~~~-~~l~~l~~L~~L~l~~n~-l~~~~~--l~~l~~L~~L~L~~N~l~~~~---------  172 (291)
T 1h6t_A          106 SSLKDLKKLKSLSLEHNGISDI-NGLVHLPQLESLYLGNNK-ITDITV--LSRLTKLDTLSLEDNQISDIV---------  172 (291)
T ss_dssp             GGGTTCTTCCEEECTTSCCCCC-GGGGGCTTCCEEECCSSC-CCCCGG--GGGCTTCSEEECCSSCCCCCG---------
T ss_pred             hhhccCCCCCEEECCCCcCCCC-hhhcCCCCCCEEEccCCc-CCcchh--hccCCCCCEEEccCCccccch---------
Confidence            6689999999999999998887 468889999999999864 445533  788999999999998876543         


Q ss_pred             hhhcCCCCCCEEEEEecCccccCCcccccCCceEEEEEcC
Q 038338          292 VELKRLTKLTTLEIEVRDAEILLPDFVSVELQRYRIRIGD  331 (421)
Q Consensus       292 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~  331 (421)
                       .+..+++|+.|++++|.++.++....+++|+.|++..+.
T Consensus       173 -~l~~l~~L~~L~L~~N~i~~l~~l~~l~~L~~L~l~~n~  211 (291)
T 1h6t_A          173 -PLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQE  211 (291)
T ss_dssp             -GGTTCTTCCEEECCSSCCCBCGGGTTCTTCSEEEEEEEE
T ss_pred             -hhcCCCccCEEECCCCcCCCChhhccCCCCCEEECcCCc
Confidence             277889999999999988887764466888888887543

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.72  E-value=1.2e-16  Score=141.74  Aligned_cols=172  Identities=22%  Similarity=0.277  Sum_probs=93.8

Q ss_pred             ccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCCC-hhhhcccCCcEEEcccccCCC--cccccCcCCCCEEEe
Q 038338          149 LQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLP-SSLGRLINLQTLCLDWCQLED--VAAIGQLKKLEILNL  225 (421)
Q Consensus       149 L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp-~~i~~l~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l  225 (421)
                      .+.++++++.+  ..+|..+   .+.+++|++++|.+..++ ..+..+++|++|++++|.+..  +..+.++++|++|++
T Consensus        16 ~~~l~~~~~~l--~~~p~~~---~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L   90 (251)
T 3m19_A           16 KKEVDCQGKSL--DSVPSGI---PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL   90 (251)
T ss_dssp             GTEEECTTCCC--SSCCSCC---CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CeEEecCCCCc--cccCCCC---CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence            44555555543  4444433   245666666666665533 245556666666666666555  344556666666666


Q ss_pred             eCCCCcccchh-hcCCCCCCEEeccCCcCCcccchhhhcCCCCCcEEEcccCCCCCccccCCCCcChhhhcCCCCCCEEE
Q 038338          226 ADSNIEQLPLE-IGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNSFSGWEKVEGGSNASLVELKRLTKLTTLE  304 (421)
Q Consensus       226 ~~~~l~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~  304 (421)
                      ++|++..+|.. +..+++|++|++++| .+..++...++.+++|++|++++|.+...++        ..++.+++|+.|+
T Consensus        91 ~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--------~~~~~l~~L~~L~  161 (251)
T 3m19_A           91 ANNQLASLPLGVFDHLTQLDKLYLGGN-QLKSLPSGVFDRLTKLKELRLNTNQLQSIPA--------GAFDKLTNLQTLS  161 (251)
T ss_dssp             TTSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCT--------TTTTTCTTCCEEE
T ss_pred             CCCcccccChhHhcccCCCCEEEcCCC-cCCCcChhHhccCCcccEEECcCCcCCccCH--------HHcCcCcCCCEEE
Confidence            66666655433 455666666666654 3344444434555666666666655554433        3355555556666


Q ss_pred             EEecCccccCCcccccCCceEEEEEcCCccchhhhhhchhhhceeEEEcCCcc
Q 038338          305 IEVRDAEILLPDFVSVELQRYRIRIGDKLEYEIDQLLVKSEALRLMMLKGLEK  357 (421)
Q Consensus       305 l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~  357 (421)
                      +++|.+..++.                       ..+..+++|+.|++++|.+
T Consensus       162 L~~N~l~~~~~-----------------------~~~~~l~~L~~L~l~~N~~  191 (251)
T 3m19_A          162 LSTNQLQSVPH-----------------------GAFDRLGKLQTITLFGNQF  191 (251)
T ss_dssp             CCSSCCSCCCT-----------------------TTTTTCTTCCEEECCSCCB
T ss_pred             CCCCcCCccCH-----------------------HHHhCCCCCCEEEeeCCce
Confidence            55555544433                       3355566666666666664

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.72  E-value=6.8e-17  Score=160.32  Aligned_cols=177  Identities=22%  Similarity=0.270  Sum_probs=148.6

Q ss_pred             ccCccCCCeEEEcCCCCCccCCcccCCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCCChhhhcccCCc
Q 038338          120 EETIRKDPIAISLPQRNIQELPERLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPSSLGRLINLQ  199 (421)
Q Consensus       120 ~~~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~  199 (421)
                      ....+.+++.|+++++.+..++....+++|+.|++++|.+  ..++.  +..+++|++|++++|.+..+| .+..+++|+
T Consensus        38 ~~~~L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l--~~~~~--l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~  112 (605)
T 1m9s_A           38 TQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKL--TDIKP--LTNLKNLGWLFLDENKIKDLS-SLKDLKKLK  112 (605)
T ss_dssp             CHHHHTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCC--CCCGG--GGGCTTCCEEECCSSCCCCCT-TSTTCTTCC
T ss_pred             chhcCCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCC--CCChh--hccCCCCCEEECcCCCCCCCh-hhccCCCCC
Confidence            3456778999999999998888777999999999999986  44444  578999999999999998876 588999999


Q ss_pred             EEEcccccCCCcccccCcCCCCEEEeeCCCCcccchhhcCCCCCCEEeccCCcCCcccchhhhcCCCCCcEEEcccCCCC
Q 038338          200 TLCLDWCQLEDVAAIGQLKKLEILNLADSNIEQLPLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNSFSG  279 (421)
Q Consensus       200 ~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  279 (421)
                      +|++++|.+..++.+..+++|+.|++++|.+..+ ..+..+++|++|++++|. +..+++  +..+++|+.|++++|.+.
T Consensus       113 ~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~-l~~~~~--l~~l~~L~~L~Ls~N~i~  188 (605)
T 1m9s_A          113 SLSLEHNGISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQ-ISDIVP--LAGLTKLQNLYLSKNHIS  188 (605)
T ss_dssp             EEECTTSCCCCCGGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSC-CCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred             EEEecCCCCCCCccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCc-CCCchh--hccCCCCCEEECcCCCCC
Confidence            9999999988877789999999999999999987 578999999999999974 445554  789999999999999876


Q ss_pred             CccccCCCCcChhhhcCCCCCCEEEEEecCccccCC
Q 038338          280 WEKVEGGSNASLVELKRLTKLTTLEIEVRDAEILLP  315 (421)
Q Consensus       280 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~  315 (421)
                      ..          ..+..+++|+.|++++|.+...|.
T Consensus       189 ~l----------~~l~~l~~L~~L~L~~N~l~~~p~  214 (605)
T 1m9s_A          189 DL----------RALAGLKNLDVLELFSQECLNKPI  214 (605)
T ss_dssp             BC----------GGGTTCTTCSEEECCSEEEECCCC
T ss_pred             CC----------hHHccCCCCCEEEccCCcCcCCcc
Confidence            54          348889999999999988765443

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.71  E-value=5.8e-17  Score=150.98  Aligned_cols=236  Identities=14%  Similarity=0.098  Sum_probs=119.6

Q ss_pred             EEEcCCCCCccCCcccCCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCC-CCh-hhhcccCCcE-EEccc
Q 038338          129 AISLPQRNIQELPERLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSS-LPS-SLGRLINLQT-LCLDW  205 (421)
Q Consensus       129 ~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-lp~-~i~~l~~L~~-L~l~~  205 (421)
                      .++.+++.+..+|..+ .++++.|++++|.+  ..++...|.++++|++|++++|.+.+ +|. .+..+.+++. +.+..
T Consensus        13 ~v~C~~~~Lt~iP~~l-~~~l~~L~Ls~N~i--~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~   89 (350)
T 4ay9_X           13 VFLCQESKVTEIPSDL-PRNAIELRFVLTKL--RVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA   89 (350)
T ss_dssp             EEEEESTTCCSCCTTC-CTTCSEEEEESCCC--SEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred             EEEecCCCCCccCcCc-CCCCCEEEccCCcC--CCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence            3444445555555332 23455555555553  44444444555555555555555433 332 2344444443 33333


Q ss_pred             ccCCC--cccccCcCCCCEEEeeCCCCcccchh-hcCCCCCCEEeccCCcCCcccchhhhcCCCCCcEEEcccCCCCCcc
Q 038338          206 CQLED--VAAIGQLKKLEILNLADSNIEQLPLE-IGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNSFSGWEK  282 (421)
Q Consensus       206 ~~~~~--~~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~  282 (421)
                      |.+..  +..+..+++|++|++++|++..+|.. +....++..+++.++..+..++...+..+.                
T Consensus        90 N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~----------------  153 (350)
T 4ay9_X           90 NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLS----------------  153 (350)
T ss_dssp             TTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSB----------------
T ss_pred             CcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcc----------------
Confidence            44444  34445555555555555555544332 223344444444444444444433222222                


Q ss_pred             ccCCCCcChhhhcCCCCCCEEEEEecCccccCCcc-cccCCceEEEEEcCCccchhhhhhchhhhceeEEEcCCcccccc
Q 038338          283 VEGGSNASLVELKRLTKLTTLEIEVRDAEILLPDF-VSVELQRYRIRIGDKLEYEIDQLLVKSEALRLMMLKGLEKVSIL  361 (421)
Q Consensus       283 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~  361 (421)
                                     ..++.|++++|.++.++... ...+|+.+.+..++......+..+..+++|+.|++++|.+.   
T Consensus       154 ---------------~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~---  215 (350)
T 4ay9_X          154 ---------------FESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH---  215 (350)
T ss_dssp             ---------------SSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC---
T ss_pred             ---------------hhhhhhccccccccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcC---
Confidence                           23445555555555554443 22445555554333333222234677788888888887643   


Q ss_pred             cchhHHHHhhhcccEEEeccccCcccccccccccCCCCCccEEEEee
Q 038338          362 QENDGTKMLLQRTEDLWLVKLEGVQNVVHELDDGEGFPRLKHLHVES  408 (421)
Q Consensus       362 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~i~~  408 (421)
                      .+|.+   .+.+|+.|.+.++..++.+|.    .+.|++|+.+++.+
T Consensus       216 ~lp~~---~~~~L~~L~~l~~~~l~~lP~----l~~l~~L~~l~l~~  255 (350)
T 4ay9_X          216 SLPSY---GLENLKKLRARSTYNLKKLPT----LEKLVALMEASLTY  255 (350)
T ss_dssp             CCCSS---SCTTCCEEECTTCTTCCCCCC----TTTCCSCCEEECSC
T ss_pred             ccChh---hhccchHhhhccCCCcCcCCC----chhCcChhhCcCCC
Confidence            22321   236778888877777777774    33788888887754

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.70  E-value=1.2e-17  Score=156.49  Aligned_cols=250  Identities=13%  Similarity=0.054  Sum_probs=158.5

Q ss_pred             EEcCCCCC-ccCCcccCCC-CccEEEeeecCCCCcccCh----HHhccCC-CccEEEccCCCCCCC-Chhhhcc-----c
Q 038338          130 ISLPQRNI-QELPERLQCP-NLQLFLLFRQGYGPVQISD----LFFEGTE-ELKVLSLIGIHFSSL-PSSLGRL-----I  196 (421)
Q Consensus       130 l~l~~~~~-~~l~~~~~~~-~L~~L~l~~~~~~~~~~~~----~~~~~l~-~L~~L~l~~~~~~~l-p~~i~~l-----~  196 (421)
                      ..++.+.+ +.+|.....+ +|+.|++++|.+  ...+.    ..+..++ +|++|++++|.++.. +..+..+     .
T Consensus         3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l--~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~   80 (362)
T 3goz_A            3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNL--YSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPA   80 (362)
T ss_dssp             EECCCCTTCCHHHHHHTSCTTCCEEECTTSCG--GGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCT
T ss_pred             cccccccchHHHHHHHhCCCCceEEEccCCCC--ChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCC
Confidence            45666666 3455555444 499999998885  44443    4457777 899999999988764 4556554     8


Q ss_pred             CCcEEEcccccCCC--ccc----ccCc-CCCCEEEeeCCCCcccch-h----hcC-CCCCCEEeccCCcCCc----ccch
Q 038338          197 NLQTLCLDWCQLED--VAA----IGQL-KKLEILNLADSNIEQLPL-E----IGQ-LTGLRLLDLTNCWSLQ----VIAP  259 (421)
Q Consensus       197 ~L~~L~l~~~~~~~--~~~----~~~l-~~L~~L~l~~~~l~~lp~-~----~~~-l~~L~~L~l~~~~~~~----~~~~  259 (421)
                      +|++|++++|.+..  +..    +..+ ++|++|++++|.++..+. .    +.. .++|++|++++|....    .++.
T Consensus        81 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~  160 (362)
T 3goz_A           81 NVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQ  160 (362)
T ss_dssp             TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHH
T ss_pred             CccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHH
Confidence            89999999998776  333    4444 789999999998885543 2    333 3689999998874432    2222


Q ss_pred             hhhcCCC-CCcEEEcccCCCCCccccCCCCcChhhhcCC-CCCCEEEEEecCccc-----cCCccc--ccCCceEEEEEc
Q 038338          260 NVISKLS-RLEELYMDNSFSGWEKVEGGSNASLVELKRL-TKLTTLEIEVRDAEI-----LLPDFV--SVELQRYRIRIG  330 (421)
Q Consensus       260 ~~l~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~-----~~~~~~--~~~L~~L~l~~~  330 (421)
                      . +..++ +|++|++++|.++....    ..+...+..+ ++|++|++++|.++.     ++..+.  .++|+.|+++.+
T Consensus       161 ~-l~~~~~~L~~L~Ls~n~l~~~~~----~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N  235 (362)
T 3goz_A          161 I-LAAIPANVNSLNLRGNNLASKNC----AELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLN  235 (362)
T ss_dssp             H-HHTSCTTCCEEECTTSCGGGSCH----HHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSS
T ss_pred             H-HhcCCccccEeeecCCCCchhhH----HHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCC
Confidence            2 45555 89999998887654432    1223445566 489999998888765     444442  257888888744


Q ss_pred             CCccc---hhhhhhchhhhceeEEEcCCccccccc-----chhHHHHhhhcccEEEeccccCccc
Q 038338          331 DKLEY---EIDQLLVKSEALRLMMLKGLEKVSILQ-----ENDGTKMLLQRTEDLWLVKLEGVQN  387 (421)
Q Consensus       331 ~~~~~---~~~~~~~~l~~L~~L~l~~~~~~~~~~-----~~~~~~~~~~~L~~L~l~~~~~~~~  387 (421)
                      .....   .+...+..+++|+.|++++|.+.....     .+..+..+ ++|+.|++++|..-..
T Consensus       236 ~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l-~~L~~LdL~~N~l~~~  299 (362)
T 3goz_A          236 CLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNI-QKIILVDKNGKEIHPS  299 (362)
T ss_dssp             CCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTC-CEEEEECTTSCBCCGG
T ss_pred             CCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccC-CceEEEecCCCcCCCc
Confidence            33221   123445667888888888866321111     11122233 6677777777765433

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.69  E-value=1e-16  Score=160.15  Aligned_cols=273  Identities=13%  Similarity=0.065  Sum_probs=139.2

Q ss_pred             ccCCCeEEEcCCCCCcc-----CCccc-CCCCccEEEeeecC--CCCcccChHHhccCCCccEEEccCC-CCCCCChhhh
Q 038338          123 IRKDPIAISLPQRNIQE-----LPERL-QCPNLQLFLLFRQG--YGPVQISDLFFEGTEELKVLSLIGI-HFSSLPSSLG  193 (421)
Q Consensus       123 ~~~~l~~l~l~~~~~~~-----l~~~~-~~~~L~~L~l~~~~--~~~~~~~~~~~~~l~~L~~L~l~~~-~~~~lp~~i~  193 (421)
                      .++++++|++++|.+..     ++... .+++|+.|+++++.  . .......+...+++|++|++++| .+..+|..+.
T Consensus       154 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~-~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~  232 (594)
T 2p1m_B          154 TCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEV-SFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQ  232 (594)
T ss_dssp             HCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCC-CHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHH
T ss_pred             hCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcC-CHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHh
Confidence            45667777777665421     22222 56677777776664  1 11112222344677777777766 2222444444


Q ss_pred             cccCCcEEEcccccC--------------------------C-----C-cccccCcCCCCEEEeeCCCCc--ccchhhcC
Q 038338          194 RLINLQTLCLDWCQL--------------------------E-----D-VAAIGQLKKLEILNLADSNIE--QLPLEIGQ  239 (421)
Q Consensus       194 ~l~~L~~L~l~~~~~--------------------------~-----~-~~~~~~l~~L~~L~l~~~~l~--~lp~~~~~  239 (421)
                      .+++|++|+++.+..                          .     . +..+..+++|++|++++|.+.  .++..+..
T Consensus       233 ~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~  312 (594)
T 2p1m_B          233 RAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQ  312 (594)
T ss_dssp             HCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTT
T ss_pred             cCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhc
Confidence            444555554332210                          0     0 111124566666666666544  12222445


Q ss_pred             CCCCCEEeccCCcCCcccchhhhcCCCCCcEEEc----------------------------------ccCCCCCccccC
Q 038338          240 LTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYM----------------------------------DNSFSGWEKVEG  285 (421)
Q Consensus       240 l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l----------------------------------~~~~~~~~~~~~  285 (421)
                      +++|++|++++| ............+++|++|++                                  ..+.++...   
T Consensus       313 ~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~---  388 (594)
T 2p1m_B          313 CPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAA---  388 (594)
T ss_dssp             CTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHH---
T ss_pred             CCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHH---
Confidence            566666666554 111111111223555555555                                  333332221   


Q ss_pred             CCCcChhhhc-CCCCCCEEEEEe------cCccccCCc------c-cccCCceEEEEEcCCccchhhhhhch-hhhceeE
Q 038338          286 GSNASLVELK-RLTKLTTLEIEV------RDAEILLPD------F-VSVELQRYRIRIGDKLEYEIDQLLVK-SEALRLM  350 (421)
Q Consensus       286 ~~~~~~~~l~-~l~~L~~L~l~~------~~~~~~~~~------~-~~~~L~~L~l~~~~~~~~~~~~~~~~-l~~L~~L  350 (421)
                           ...+. .+++|+.|++..      +.++..|..      + .+++|+.|+++  +......+..++. +++|+.|
T Consensus       389 -----~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~--~~l~~~~~~~l~~~~~~L~~L  461 (594)
T 2p1m_B          389 -----LITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLS--GLLTDKVFEYIGTYAKKMEML  461 (594)
T ss_dssp             -----HHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECC--SSCCHHHHHHHHHHCTTCCEE
T ss_pred             -----HHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeec--CcccHHHHHHHHHhchhccEe
Confidence                 12232 466777777762      223332221      1 34677777773  2334344444544 7888888


Q ss_pred             EEcCCcccccccchhHHHHhhhcccEEEeccccCcccccccccccCCCCCccEEEEeecCc
Q 038338          351 MLKGLEKVSILQENDGTKMLLQRTEDLWLVKLEGVQNVVHELDDGEGFPRLKHLHVESCYE  411 (421)
Q Consensus       351 ~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~i~~c~~  411 (421)
                      ++++|.+.  ......+..-+++|++|++++|+........+  ..++++|+.|++++|+.
T Consensus       462 ~L~~~~i~--~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~--~~~l~~L~~L~l~~~~~  518 (594)
T 2p1m_B          462 SVAFAGDS--DLGMHHVLSGCDSLRKLEIRDCPFGDKALLAN--ASKLETMRSLWMSSCSV  518 (594)
T ss_dssp             EEESCCSS--HHHHHHHHHHCTTCCEEEEESCSCCHHHHHHT--GGGGGGSSEEEEESSCC
T ss_pred             eccCCCCc--HHHHHHHHhcCCCcCEEECcCCCCcHHHHHHH--HHhCCCCCEEeeeCCCC
Confidence            88887742  22233332224899999999998743333222  34689999999999864

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.69  E-value=2.2e-16  Score=134.52  Aligned_cols=147  Identities=18%  Similarity=0.235  Sum_probs=69.9

Q ss_pred             ccCCCeEEEcCCCCCccCCcccCCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCC-CChhhhcccCCcEE
Q 038338          123 IRKDPIAISLPQRNIQELPERLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSS-LPSSLGRLINLQTL  201 (421)
Q Consensus       123 ~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-lp~~i~~l~~L~~L  201 (421)
                      .+++++.++++++.+..++....+++|+.|++++|..  ..++ . +..+++|++|++++|.++. .|..++.+++|++|
T Consensus        42 ~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~--~~~~-~-l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L  117 (197)
T 4ezg_A           42 QMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHA--TNYN-P-ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL  117 (197)
T ss_dssp             HHHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCC--SCCG-G-GTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred             hcCCccEEeccCCCccChHHHhcCCCCCEEEccCCCC--Ccch-h-hhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence            3455556666555555555433555555555555532  2222 1 2445555555555555543 34444555555555


Q ss_pred             EcccccCCC--cccccCcCCCCEEEeeCCC-CcccchhhcCCCCCCEEeccCCcCCcccchhhhcCCCCCcEEEcccCC
Q 038338          202 CLDWCQLED--VAAIGQLKKLEILNLADSN-IEQLPLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNSF  277 (421)
Q Consensus       202 ~l~~~~~~~--~~~~~~l~~L~~L~l~~~~-l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~  277 (421)
                      ++++|.+..  +..++++++|++|++++|. +..+| .+..+++|++|++++|. +..++.  +..+++|++|++++|.
T Consensus       118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~-i~~~~~--l~~l~~L~~L~l~~N~  192 (197)
T 4ezg_A          118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDG-VHDYRG--IEDFPKLNQLYAFSQT  192 (197)
T ss_dssp             ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBC-CCCCTT--GGGCSSCCEEEECBC-
T ss_pred             EecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCC-CcChHH--hccCCCCCEEEeeCcc
Confidence            555555443  4444555555555555554 44443 34445555555554432 223331  3444445555544443

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.69  E-value=7.9e-17  Score=147.49  Aligned_cols=220  Identities=12%  Similarity=0.041  Sum_probs=165.2

Q ss_pred             CCCeEEEcCCCCCc--c---CCcccCCCCccEEEeeecCCCCcccChHHh-ccCCCccEEEccCCCCCC-CC----hhhh
Q 038338          125 KDPIAISLPQRNIQ--E---LPERLQCPNLQLFLLFRQGYGPVQISDLFF-EGTEELKVLSLIGIHFSS-LP----SSLG  193 (421)
Q Consensus       125 ~~l~~l~l~~~~~~--~---l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-~~l~~L~~L~l~~~~~~~-lp----~~i~  193 (421)
                      ..++.+.+.+..+.  .   +.....+++|+.|++++|.+ .+..+..++ ..+++|++|++++|.+.. .+    ..+.
T Consensus        64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l-~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~  142 (310)
T 4glp_A           64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKI-TGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW  142 (310)
T ss_dssp             CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCC-BSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT
T ss_pred             cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEe-ccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh
Confidence            35678888877662  1   22233567799999999987 556665544 778999999999999876 23    2345


Q ss_pred             cccCCcEEEcccccCCC--cccccCcCCCCEEEeeCCCCcc---cchh--hcCCCCCCEEeccCCcCCcccch---hhhc
Q 038338          194 RLINLQTLCLDWCQLED--VAAIGQLKKLEILNLADSNIEQ---LPLE--IGQLTGLRLLDLTNCWSLQVIAP---NVIS  263 (421)
Q Consensus       194 ~l~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~l~~---lp~~--~~~l~~L~~L~l~~~~~~~~~~~---~~l~  263 (421)
                      .+++|++|++++|.+..  +..++.+++|++|++++|++..   ++..  ++.+++|++|++++|.. ..++.   ..++
T Consensus       143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l-~~l~~~~~~l~~  221 (310)
T 4glp_A          143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGM-ETPTGVCAALAA  221 (310)
T ss_dssp             BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCC-CCHHHHHHHHHH
T ss_pred             hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCC-CchHHHHHHHHh
Confidence            68999999999999887  5788999999999999998763   4333  46899999999999744 44443   2357


Q ss_pred             CCCCCcEEEcccCCCCCccccCCCCcChhhhcCC---CCCCEEEEEecCccccCCcccccCCceEEEEEcCCccchhhhh
Q 038338          264 KLSRLEELYMDNSFSGWEKVEGGSNASLVELKRL---TKLTTLEIEVRDAEILLPDFVSVELQRYRIRIGDKLEYEIDQL  340 (421)
Q Consensus       264 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l---~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~  340 (421)
                      .+++|++|++++|.+....+        ..+..+   ++|++|++++|.++.+|..+. ++|+.|+++.+....  +|. 
T Consensus       222 ~l~~L~~L~Ls~N~l~~~~p--------~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~-~~L~~L~Ls~N~l~~--~~~-  289 (310)
T 4glp_A          222 AGVQPHSLDLSHNSLRATVN--------PSAPRCMWSSALNSLNLSFAGLEQVPKGLP-AKLRVLDLSSNRLNR--APQ-  289 (310)
T ss_dssp             HTCCCSSEECTTSCCCCCCC--------SCCSSCCCCTTCCCEECCSSCCCSCCSCCC-SCCSCEECCSCCCCS--CCC-
T ss_pred             cCCCCCEEECCCCCCCccch--------hhHHhccCcCcCCEEECCCCCCCchhhhhc-CCCCEEECCCCcCCC--Cch-
Confidence            88999999999998877633        223343   799999999999998888764 899999997444332  222 


Q ss_pred             hchhhhceeEEEcCCccc
Q 038338          341 LVKSEALRLMMLKGLEKV  358 (421)
Q Consensus       341 ~~~l~~L~~L~l~~~~~~  358 (421)
                      +..+++|+.|++++|.+.
T Consensus       290 ~~~l~~L~~L~L~~N~l~  307 (310)
T 4glp_A          290 PDELPEVDNLTLDGNPFL  307 (310)
T ss_dssp             TTSCCCCSCEECSSTTTS
T ss_pred             hhhCCCccEEECcCCCCC
Confidence            677899999999998753

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.67  E-value=3.2e-16  Score=133.50  Aligned_cols=150  Identities=19%  Similarity=0.227  Sum_probs=111.0

Q ss_pred             CCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCCChhhhcccCCcEEEcccccCCC--cccccCcCCCCE
Q 038338          145 QCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPSSLGRLINLQTLCLDWCQLED--VAAIGQLKKLEI  222 (421)
Q Consensus       145 ~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~--~~~~~~l~~L~~  222 (421)
                      .+++|+.|++++|.+  ..++ . +..+++|++|++++|.+..++ .+..+++|++|++++|.+..  +..++.+++|++
T Consensus        42 ~l~~L~~L~l~~n~i--~~l~-~-l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~  116 (197)
T 4ezg_A           42 QMNSLTYITLANINV--TDLT-G-IEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL  116 (197)
T ss_dssp             HHHTCCEEEEESSCC--SCCT-T-GGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred             hcCCccEEeccCCCc--cChH-H-HhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence            567788888888875  4555 2 467888888888888666554 57778888888888888776  777888888888


Q ss_pred             EEeeCCCCcc-cchhhcCCCCCCEEeccCCcCCcccchhhhcCCCCCcEEEcccCCCCCccccCCCCcChhhhcCCCCCC
Q 038338          223 LNLADSNIEQ-LPLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNSFSGWEKVEGGSNASLVELKRLTKLT  301 (421)
Q Consensus       223 L~l~~~~l~~-lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~  301 (421)
                      |++++|++.. .|..+..+++|++|++++|..++.++.  +..+++|++|++++|.+...          ..+..+++|+
T Consensus       117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~--l~~l~~L~~L~l~~n~i~~~----------~~l~~l~~L~  184 (197)
T 4ezg_A          117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP--LKTLPELKSLNIQFDGVHDY----------RGIEDFPKLN  184 (197)
T ss_dssp             EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGG--GGGCSSCCEEECTTBCCCCC----------TTGGGCSSCC
T ss_pred             EEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccHh--hcCCCCCCEEECCCCCCcCh----------HHhccCCCCC
Confidence            8888888773 566778888888888888765666663  67888888888888776543          2467778888


Q ss_pred             EEEEEecCcc
Q 038338          302 TLEIEVRDAE  311 (421)
Q Consensus       302 ~L~l~~~~~~  311 (421)
                      .|++++|.++
T Consensus       185 ~L~l~~N~i~  194 (197)
T 4ezg_A          185 QLYAFSQTIG  194 (197)
T ss_dssp             EEEECBC---
T ss_pred             EEEeeCcccC
Confidence            8888877764

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.67  E-value=1.4e-17  Score=155.88  Aligned_cols=233  Identities=12%  Similarity=0.137  Sum_probs=166.6

Q ss_pred             CccCCCeEEEcCCCCCccCCc-----c-cCCC-CccEEEeeecCCCCcccChHHhccC-----CCccEEEccCCCCCCCC
Q 038338          122 TIRKDPIAISLPQRNIQELPE-----R-LQCP-NLQLFLLFRQGYGPVQISDLFFEGT-----EELKVLSLIGIHFSSLP  189 (421)
Q Consensus       122 ~~~~~l~~l~l~~~~~~~l~~-----~-~~~~-~L~~L~l~~~~~~~~~~~~~~~~~l-----~~L~~L~l~~~~~~~lp  189 (421)
                      ...+++++|++++|.+...+.     . ..++ +|+.|++++|.+  .......+..+     ++|++|++++|.++..+
T Consensus        19 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l--~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~   96 (362)
T 3goz_A           19 SIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSL--GFKNSDELVQILAAIPANVTSLNLSGNFLSYKS   96 (362)
T ss_dssp             TSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCG--GGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSC
T ss_pred             hCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCC--CHHHHHHHHHHHhccCCCccEEECcCCcCChHH
Confidence            345569999999999966653     2 2788 999999999986  33332223443     99999999999998643


Q ss_pred             -hh----hhcc-cCCcEEEcccccCCC--ccc----ccCc-CCCCEEEeeCCCCc-----ccchhhcCCC-CCCEEeccC
Q 038338          190 -SS----LGRL-INLQTLCLDWCQLED--VAA----IGQL-KKLEILNLADSNIE-----QLPLEIGQLT-GLRLLDLTN  250 (421)
Q Consensus       190 -~~----i~~l-~~L~~L~l~~~~~~~--~~~----~~~l-~~L~~L~l~~~~l~-----~lp~~~~~l~-~L~~L~l~~  250 (421)
                       ..    +..+ .+|++|++++|.+..  +..    +..+ ++|++|++++|.+.     .++..+..++ +|++|++++
T Consensus        97 ~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~  176 (362)
T 3goz_A           97 SDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRG  176 (362)
T ss_dssp             HHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTT
T ss_pred             HHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecC
Confidence             33    4444 899999999999877  333    3443 69999999999888     5556666776 999999999


Q ss_pred             CcCCcccchh---hhcCC-CCCcEEEcccCCCCCccccCCCCcChhhhcC-CCCCCEEEEEecCccccCCc-----c-cc
Q 038338          251 CWSLQVIAPN---VISKL-SRLEELYMDNSFSGWEKVEGGSNASLVELKR-LTKLTTLEIEVRDAEILLPD-----F-VS  319 (421)
Q Consensus       251 ~~~~~~~~~~---~l~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~-l~~L~~L~l~~~~~~~~~~~-----~-~~  319 (421)
                      |......+..   .+... ++|++|++++|.++....    ..+...+.. .++|++|++++|.++..+..     + ..
T Consensus       177 n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~----~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l  252 (362)
T 3goz_A          177 NNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSY----AELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSL  252 (362)
T ss_dssp             SCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCH----HHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTT
T ss_pred             CCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHH----HHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcC
Confidence            7543333321   24455 599999999998765322    223355655 45999999999998765431     1 34


Q ss_pred             cCCceEEEEEcCC--cc----chhhhhhchhhhceeEEEcCCccccc
Q 038338          320 VELQRYRIRIGDK--LE----YEIDQLLVKSEALRLMMLKGLEKVSI  360 (421)
Q Consensus       320 ~~L~~L~l~~~~~--~~----~~~~~~~~~l~~L~~L~l~~~~~~~~  360 (421)
                      ++|+.|+++.+..  ..    ..++..+..+++|+.|++++|.+...
T Consensus       253 ~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~  299 (362)
T 3goz_A          253 KHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS  299 (362)
T ss_dssp             TTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred             CCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence            8999999986541  11    12345677889999999999886443

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.66  E-value=1.5e-15  Score=149.14  Aligned_cols=194  Identities=19%  Similarity=0.200  Sum_probs=140.3

Q ss_pred             CCCeEEEcCCCCCccCCcccCCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCCChhhhcccCCcEEEcc
Q 038338          125 KDPIAISLPQRNIQELPERLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPSSLGRLINLQTLCLD  204 (421)
Q Consensus       125 ~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~  204 (421)
                      .+++.|+++++.+..+|... +++|+.|++++|.+  ..+|    ..+++|++|++++|.++.+|. +..  +|++|+++
T Consensus        59 ~~L~~L~Ls~n~L~~lp~~l-~~~L~~L~Ls~N~l--~~ip----~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls  128 (571)
T 3cvr_A           59 NQFSELQLNRLNLSSLPDNL-PPQITVLEITQNAL--ISLP----ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVD  128 (571)
T ss_dssp             TTCSEEECCSSCCSCCCSCC-CTTCSEEECCSSCC--SCCC----CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECC
T ss_pred             CCccEEEeCCCCCCccCHhH-cCCCCEEECcCCCC--cccc----cccCCCCEEEccCCCCCCcch-hhc--CCCEEECC
Confidence            37889999999887787654 47899999999886  4666    347889999999998888887 655  89999999


Q ss_pred             cccCCC-cccccCcCCCCEEEeeCCCCcccchhhcCCCCCCEEeccCCcCCcccchhhhcCCCCCcEEEcccCCCCCccc
Q 038338          205 WCQLED-VAAIGQLKKLEILNLADSNIEQLPLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNSFSGWEKV  283 (421)
Q Consensus       205 ~~~~~~-~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~  283 (421)
                      +|.++. |.   .+++|++|++++|.++.+|.   .+++|++|++++|. +..+|.  +.  ++|+.|++++|.++..+.
T Consensus       129 ~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~-L~~lp~--l~--~~L~~L~Ls~N~L~~lp~  197 (571)
T 3cvr_A          129 NNQLTMLPE---LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQ-LTFLPE--LP--ESLEALDVSTNLLESLPA  197 (571)
T ss_dssp             SSCCSCCCC---CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSC-CSCCCC--CC--TTCCEEECCSSCCSSCCC
T ss_pred             CCcCCCCCC---cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCC-CCCcch--hh--CCCCEEECcCCCCCchhh
Confidence            998888 55   67889999999998888876   67889999998864 455766  44  888889988887774332


Q ss_pred             cCCCCcChhhh-cCCCCCCEEEEEecCccccCCcc-cccCCceEEEEEcCCccchhhhhhchhhh
Q 038338          284 EGGSNASLVEL-KRLTKLTTLEIEVRDAEILLPDF-VSVELQRYRIRIGDKLEYEIDQLLVKSEA  346 (421)
Q Consensus       284 ~~~~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~  346 (421)
                       .     ...+ ...+.|+.|++++|.+..+|..+ .+++|+.|+++ .+.+....|..+..++.
T Consensus       198 -~-----~~~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~-~N~l~~~~p~~l~~l~~  255 (571)
T 3cvr_A          198 -V-----PVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILE-DNPLSSRIRESLSQQTA  255 (571)
T ss_dssp             -C-----C--------CCEEEECCSSCCCCCCGGGGGSCTTEEEECC-SSSCCHHHHHHHHHHHH
T ss_pred             -H-----HHhhhcccccceEEecCCCcceecCHHHhcCCCCCEEEee-CCcCCCcCHHHHHHhhc
Confidence             1     1111 11223388888888888777765 44777777776 44455456666665544

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.66  E-value=3e-16  Score=155.73  Aligned_cols=182  Identities=20%  Similarity=0.218  Sum_probs=137.5

Q ss_pred             EEcCCCCCccCCcccCCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCCChhhhcccCCcEEEcccccCC
Q 038338          130 ISLPQRNIQELPERLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPSSLGRLINLQTLCLDWCQLE  209 (421)
Q Consensus       130 l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~  209 (421)
                      +.+..+.+..+.....+++|+.|++++|.+  ..++.  +..+++|+.|++++|.+..+++ +..+++|++|++++|.+.
T Consensus        26 l~l~~~~i~~~~~~~~L~~L~~L~l~~n~i--~~l~~--l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~  100 (605)
T 1m9s_A           26 DNLKKKSVTDAVTQNELNSIDQIIANNSDI--KSVQG--IQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIK  100 (605)
T ss_dssp             HHTTCSCTTSEECHHHHTTCCCCBCTTCCC--CCCTT--GGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCC
T ss_pred             HhccCCCcccccchhcCCCCCEEECcCCCC--CCChH--HccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCC
Confidence            344444444444444778888888888875  44543  4778899999999988888776 888888999999988888


Q ss_pred             CcccccCcCCCCEEEeeCCCCcccchhhcCCCCCCEEeccCCcCCcccchhhhcCCCCCcEEEcccCCCCCccccCCCCc
Q 038338          210 DVAAIGQLKKLEILNLADSNIEQLPLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNSFSGWEKVEGGSNA  289 (421)
Q Consensus       210 ~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~  289 (421)
                      .++.+..+++|+.|++++|.+..++ .+..+++|+.|++++|. +..++.  ++.+++|+.|++++|.+....+      
T Consensus       101 ~l~~l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~-l~~l~~--l~~l~~L~~L~Ls~N~l~~~~~------  170 (605)
T 1m9s_A          101 DLSSLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNK-ITDITV--LSRLTKLDTLSLEDNQISDIVP------  170 (605)
T ss_dssp             CCTTSTTCTTCCEEECTTSCCCCCG-GGGGCTTCSEEECCSSC-CCCCGG--GGSCTTCSEEECCSSCCCCCGG------
T ss_pred             CChhhccCCCCCEEEecCCCCCCCc-cccCCCccCEEECCCCc-cCCchh--hcccCCCCEEECcCCcCCCchh------
Confidence            8667888889999999988888764 58888889999998864 444532  7888889999988887765432      


Q ss_pred             ChhhhcCCCCCCEEEEEecCccccCCcccccCCceEEEEEc
Q 038338          290 SLVELKRLTKLTTLEIEVRDAEILLPDFVSVELQRYRIRIG  330 (421)
Q Consensus       290 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~  330 (421)
                          +..+++|+.|++++|.+..++....+++|+.|++..+
T Consensus       171 ----l~~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~L~~N  207 (605)
T 1m9s_A          171 ----LAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQ  207 (605)
T ss_dssp             ----GTTCTTCCEEECCSSCCCBCGGGTTCTTCSEEECCSE
T ss_pred             ----hccCCCCCEEECcCCCCCCChHHccCCCCCEEEccCC
Confidence                7788888888888888877765445678888887543

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.66  E-value=1.4e-15  Score=149.32  Aligned_cols=187  Identities=17%  Similarity=0.170  Sum_probs=149.6

Q ss_pred             CCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCCChhhhcccCCcEEEcccccCCC-cccccCcCCCCEEEe
Q 038338          147 PNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPSSLGRLINLQTLCLDWCQLED-VAAIGQLKKLEILNL  225 (421)
Q Consensus       147 ~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~-~~~~~~l~~L~~L~l  225 (421)
                      .+++.|++++|.+  ..+|..+   +++|++|++++|.++.+|   ..+++|++|++++|.++. |. +.+  +|++|++
T Consensus        59 ~~L~~L~Ls~n~L--~~lp~~l---~~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~L  127 (571)
T 3cvr_A           59 NQFSELQLNRLNL--SSLPDNL---PPQITVLEITQNALISLP---ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDV  127 (571)
T ss_dssp             TTCSEEECCSSCC--SCCCSCC---CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEEC
T ss_pred             CCccEEEeCCCCC--CccCHhH---cCCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCCcch-hhc--CCCEEEC
Confidence            4899999999986  4477755   488999999999999988   557999999999999988 66 665  9999999


Q ss_pred             eCCCCcccchhhcCCCCCCEEeccCCcCCcccchhhhcCCCCCcEEEcccCCCCCccccCCCCcChhhhcCCCCCCEEEE
Q 038338          226 ADSNIEQLPLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNSFSGWEKVEGGSNASLVELKRLTKLTTLEI  305 (421)
Q Consensus       226 ~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l  305 (421)
                      ++|+++.+|.   .+++|++|++++|. +..+|.    .+++|++|++++|.++..+.          +.  ++|+.|++
T Consensus       128 s~N~l~~lp~---~l~~L~~L~Ls~N~-l~~lp~----~l~~L~~L~Ls~N~L~~lp~----------l~--~~L~~L~L  187 (571)
T 3cvr_A          128 DNNQLTMLPE---LPALLEYINADNNQ-LTMLPE----LPTSLEVLSVRNNQLTFLPE----------LP--ESLEALDV  187 (571)
T ss_dssp             CSSCCSCCCC---CCTTCCEEECCSSC-CSCCCC----CCTTCCEEECCSSCCSCCCC----------CC--TTCCEEEC
T ss_pred             CCCcCCCCCC---cCccccEEeCCCCc-cCcCCC----cCCCcCEEECCCCCCCCcch----------hh--CCCCEEEC
Confidence            9999999987   78999999999964 455665    57899999999998876322          33  89999999


Q ss_pred             EecCccccCCcccccCC-------ceEEEEEcCCccchhhhhhchhhhceeEEEcCCcccccccchhHHHHh
Q 038338          306 EVRDAEILLPDFVSVEL-------QRYRIRIGDKLEYEIDQLLVKSEALRLMMLKGLEKVSILQENDGTKML  370 (421)
Q Consensus       306 ~~~~~~~~~~~~~~~~L-------~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~  370 (421)
                      ++|.++.+|. +. .+|       +.|+++. +.+. .+|..+..+++|+.|++++|.+  ....|..+..+
T Consensus       188 s~N~L~~lp~-~~-~~L~~~~~~L~~L~Ls~-N~l~-~lp~~l~~l~~L~~L~L~~N~l--~~~~p~~l~~l  253 (571)
T 3cvr_A          188 STNLLESLPA-VP-VRNHHSEETEIFFRCRE-NRIT-HIPENILSLDPTCTIILEDNPL--SSRIRESLSQQ  253 (571)
T ss_dssp             CSSCCSSCCC-CC---------CCEEEECCS-SCCC-CCCGGGGGSCTTEEEECCSSSC--CHHHHHHHHHH
T ss_pred             cCCCCCchhh-HH-HhhhcccccceEEecCC-Ccce-ecCHHHhcCCCCCEEEeeCCcC--CCcCHHHHHHh
Confidence            9999998888 43 267       8898873 4444 5677788899999999999884  33456666665

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.65  E-value=8.5e-16  Score=136.95  Aligned_cols=170  Identities=20%  Similarity=0.214  Sum_probs=117.7

Q ss_pred             CCCeEEEcCCCCCccCCcccCCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCCChhhhcccCCcEEEcc
Q 038338          125 KDPIAISLPQRNIQELPERLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPSSLGRLINLQTLCLD  204 (421)
Q Consensus       125 ~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~  204 (421)
                      .++..+.+.++.+..++....+++|+.|++++|.+  ..++ . +..+++|++|++++|.++.++. +..+++|++|+++
T Consensus        19 ~~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i--~~l~-~-l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~   93 (263)
T 1xeu_A           19 ANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNI--QSLA-G-MQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVN   93 (263)
T ss_dssp             HHHHHHHHTCSCTTSEECHHHHTTCSEEECTTSCC--CCCT-T-GGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECC
T ss_pred             HHHHHHHhcCCCcccccchhhcCcCcEEECcCCCc--ccch-H-HhhCCCCCEEECCCCccCCChh-hccCCCCCEEECC
Confidence            33444555556665555444677777777777764  4454 2 4667888888888887777766 7778888888888


Q ss_pred             cccCCCcccccCcCCCCEEEeeCCCCcccchhhcCCCCCCEEeccCCcCCcccchhhhcCCCCCcEEEcccCCCCCcccc
Q 038338          205 WCQLEDVAAIGQLKKLEILNLADSNIEQLPLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNSFSGWEKVE  284 (421)
Q Consensus       205 ~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~  284 (421)
                      +|.++..+.+.. ++|++|++++|+++.++ .+..+++|++|++++|. +..++.  ++.+++|++|++++|.+...   
T Consensus        94 ~N~l~~l~~~~~-~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~-i~~~~~--l~~l~~L~~L~L~~N~i~~~---  165 (263)
T 1xeu_A           94 RNRLKNLNGIPS-ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNK-LKSIVM--LGFLSKLEVLDLHGNEITNT---  165 (263)
T ss_dssp             SSCCSCCTTCCC-SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSC-CCBCGG--GGGCTTCCEEECTTSCCCBC---
T ss_pred             CCccCCcCcccc-CcccEEEccCCccCCCh-hhcCcccccEEECCCCc-CCCChH--HccCCCCCEEECCCCcCcch---
Confidence            887777223333 77888888888877765 47778888888888753 455553  67788888888888776644   


Q ss_pred             CCCCcChhhhcCCCCCCEEEEEecCccccC
Q 038338          285 GGSNASLVELKRLTKLTTLEIEVRDAEILL  314 (421)
Q Consensus       285 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~  314 (421)
                             ..+..+++|+.|++++|.+...|
T Consensus       166 -------~~l~~l~~L~~L~l~~N~~~~~~  188 (263)
T 1xeu_A          166 -------GGLTRLKKVNWIDLTGQKCVNEP  188 (263)
T ss_dssp             -------TTSTTCCCCCEEEEEEEEEECCC
T ss_pred             -------HHhccCCCCCEEeCCCCcccCCc
Confidence                   34677788888888888775544

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.65  E-value=2.6e-15  Score=130.93  Aligned_cols=151  Identities=24%  Similarity=0.292  Sum_probs=121.5

Q ss_pred             CeEEEcCCCCCccCCcccCCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCCChh-hhcccCCcEEEccc
Q 038338          127 PIAISLPQRNIQELPERLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPSS-LGRLINLQTLCLDW  205 (421)
Q Consensus       127 l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~-i~~l~~L~~L~l~~  205 (421)
                      .+.++.+++.+..+|.... ++|+.|++++|.+  ..++...|..+++|++|++++|.++.+|.. +..+++|++|++++
T Consensus        21 ~~~v~c~~~~l~~ip~~~~-~~L~~L~Ls~n~i--~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~   97 (229)
T 3e6j_A           21 GTTVDCRSKRHASVPAGIP-TNAQILYLHDNQI--TKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT   97 (229)
T ss_dssp             TTEEECTTSCCSSCCSCCC-TTCSEEECCSSCC--CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEeEccCCCcCccCCCCC-CCCCEEEcCCCcc--CccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence            4467788888888876443 7899999999986  445444468899999999999999887754 68899999999999


Q ss_pred             ccCCC-c-ccccCcCCCCEEEeeCCCCcccchhhcCCCCCCEEeccCCcCCcccchhhhcCCCCCcEEEcccCCCCCc
Q 038338          206 CQLED-V-AAIGQLKKLEILNLADSNIEQLPLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNSFSGWE  281 (421)
Q Consensus       206 ~~~~~-~-~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~  281 (421)
                      |.++. + ..+..+++|++|++++|++..+|..+..+++|++|++++| .+..++...+..+++|+.|++++|.+...
T Consensus        98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  174 (229)
T 3e6j_A           98 NQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQN-QLKSIPHGAFDRLSSLTHAYLFGNPWDCE  174 (229)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECTTSCBCTT
T ss_pred             CcCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCCCccCC
Confidence            99888 4 4578899999999999999999988999999999999986 55666666678888999999988876543

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.65  E-value=5.6e-16  Score=133.18  Aligned_cols=170  Identities=19%  Similarity=0.264  Sum_probs=112.5

Q ss_pred             eEEEcCCCCCccCCcccCCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCCChh-hhcccCCcEEEcccc
Q 038338          128 IAISLPQRNIQELPERLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPSS-LGRLINLQTLCLDWC  206 (421)
Q Consensus       128 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~-i~~l~~L~~L~l~~~  206 (421)
                      +.++..++.+..+|... .++++.|++++|.+  ..++...+..+++|++|++++|.++.+|.. +..+.+|++|++++|
T Consensus        10 ~~v~c~~~~l~~~p~~~-~~~l~~L~l~~n~l--~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n   86 (208)
T 2o6s_A           10 TTVECYSQGRTSVPTGI-PAQTTYLDLETNSL--KSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN   86 (208)
T ss_dssp             TEEECCSSCCSSCCSCC-CTTCSEEECCSSCC--CCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEecCCCccCCCCCC-CCCCcEEEcCCCcc--CcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence            34555566665555432 45777888887775  455555557778888888888877776554 567778888888887


Q ss_pred             cCCC-c-ccccCcCCCCEEEeeCCCCcccchh-hcCCCCCCEEeccCCcCCcccchhhhcCCCCCcEEEcccCCCCCccc
Q 038338          207 QLED-V-AAIGQLKKLEILNLADSNIEQLPLE-IGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNSFSGWEKV  283 (421)
Q Consensus       207 ~~~~-~-~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~  283 (421)
                      .++. + ..++++++|++|++++|++..+|.. +..+++|++|++++| .+..++...+..+++|+.|++++|.+.    
T Consensus        87 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~----  161 (208)
T 2o6s_A           87 QLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQN-QLKSVPDGVFDRLTSLQYIWLHDNPWD----  161 (208)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSCCBC----
T ss_pred             cCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCC-ccceeCHHHhccCCCccEEEecCCCee----
Confidence            7776 3 3467778888888888777776654 567777888888775 344555554667777777777776432    


Q ss_pred             cCCCCcChhhhcCCCCCCEEEEEecCcc-ccCCc
Q 038338          284 EGGSNASLVELKRLTKLTTLEIEVRDAE-ILLPD  316 (421)
Q Consensus       284 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~  316 (421)
                                 +.+++|+.|++..|.+. .+|..
T Consensus       162 -----------~~~~~l~~L~~~~n~~~g~ip~~  184 (208)
T 2o6s_A          162 -----------CTCPGIRYLSEWINKHSGVVRNS  184 (208)
T ss_dssp             -----------CCTTTTHHHHHHHHHCTTTBBCT
T ss_pred             -----------cCCCCHHHHHHHHHhCCceeecc
Confidence                       33455666666655543 45544

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.65  E-value=1e-16  Score=160.24  Aligned_cols=127  Identities=15%  Similarity=0.062  Sum_probs=69.2

Q ss_pred             ccCCCeEEEcCCCCCcc--CCccc-CCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCC-----CChhhhc
Q 038338          123 IRKDPIAISLPQRNIQE--LPERL-QCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSS-----LPSSLGR  194 (421)
Q Consensus       123 ~~~~l~~l~l~~~~~~~--l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-----lp~~i~~  194 (421)
                      .++++++|+++++.+..  +.... .+++|+.|++.+|..........++.++++|++|++++|.++.     ++.....
T Consensus       103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~  182 (594)
T 2p1m_B          103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDT  182 (594)
T ss_dssp             HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTT
T ss_pred             hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhc
Confidence            35577777777766521  11222 4677777777776320111122333567777777777776543     2222235


Q ss_pred             ccCCcEEEccccc--CCC---cccccCcCCCCEEEeeCC-CCcccchhhcCCCCCCEEecc
Q 038338          195 LINLQTLCLDWCQ--LED---VAAIGQLKKLEILNLADS-NIEQLPLEIGQLTGLRLLDLT  249 (421)
Q Consensus       195 l~~L~~L~l~~~~--~~~---~~~~~~l~~L~~L~l~~~-~l~~lp~~~~~l~~L~~L~l~  249 (421)
                      +++|++|++++|.  +..   ..-+.++++|++|++++| .+..+|..+..+++|++|+++
T Consensus       183 ~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~  243 (594)
T 2p1m_B          183 YTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTG  243 (594)
T ss_dssp             CCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECS
T ss_pred             CCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccc
Confidence            5677777777765  221   122234577777777766 334455555555555555543

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.63  E-value=1.8e-15  Score=140.83  Aligned_cols=221  Identities=15%  Similarity=0.153  Sum_probs=152.4

Q ss_pred             cEEEccCCCCCCCChhhhcccCCcEEEcccccCCC-c-ccccCcCCCCEEEeeCCCCc-ccchh-hcCCCCCCEEeccCC
Q 038338          176 KVLSLIGIHFSSLPSSLGRLINLQTLCLDWCQLED-V-AAIGQLKKLEILNLADSNIE-QLPLE-IGQLTGLRLLDLTNC  251 (421)
Q Consensus       176 ~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~-~-~~~~~l~~L~~L~l~~~~l~-~lp~~-~~~l~~L~~L~l~~~  251 (421)
                      ++++.+++.++.+|..+  ..++++|++++|.++. | ..++++++|++|++++|++. .+|.+ +.++++++++...++
T Consensus        12 ~~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~   89 (350)
T 4ay9_X           12 RVFLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA   89 (350)
T ss_dssp             TEEEEESTTCCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred             CEEEecCCCCCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence            45666667777777655  3567888888888777 4 45778888888888888764 45543 567777777655555


Q ss_pred             cCCcccchhhhcCCCCCcEEEcccCCCCCccccCCCCcChhhhcCCCCCCEEEEEec-CccccCCcc--cc-cCCceEEE
Q 038338          252 WSLQVIAPNVISKLSRLEELYMDNSFSGWEKVEGGSNASLVELKRLTKLTTLEIEVR-DAEILLPDF--VS-VELQRYRI  327 (421)
Q Consensus       252 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~-~~~~~~~~~--~~-~~L~~L~l  327 (421)
                      +.+..++++.+..+++|++|++++|.+...+.        .......++..+++..+ .+..++...  .. ..++.|++
T Consensus        90 N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~--------~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L  161 (350)
T 4ay9_X           90 NNLLYINPEAFQNLPNLQYLLISNTGIKHLPD--------VHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWL  161 (350)
T ss_dssp             TTCCEECTTSBCCCTTCCEEEEEEECCSSCCC--------CTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEEC
T ss_pred             CcccccCchhhhhccccccccccccccccCCc--------hhhcccchhhhhhhccccccccccccchhhcchhhhhhcc
Confidence            56677766667888888888888887765543        22334456667777653 466666542  22 56888888


Q ss_pred             EEcCCccchhhhhhchhhhceeEEEcCCcccccccchh-HHHHhhhcccEEEeccccCcccccccccccCCCCCccEEEE
Q 038338          328 RIGDKLEYEIDQLLVKSEALRLMMLKGLEKVSILQEND-GTKMLLQRTEDLWLVKLEGVQNVVHELDDGEGFPRLKHLHV  406 (421)
Q Consensus       328 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~i  406 (421)
                      + .+.+. .++.......+|+.|.+.++.  ....++. .+..+ ++|++|++++|.. +.+|.     ..|.+|+.|.+
T Consensus       162 ~-~N~i~-~i~~~~f~~~~L~~l~l~~~n--~l~~i~~~~f~~l-~~L~~LdLs~N~l-~~lp~-----~~~~~L~~L~~  230 (350)
T 4ay9_X          162 N-KNGIQ-EIHNSAFNGTQLDELNLSDNN--NLEELPNDVFHGA-SGPVILDISRTRI-HSLPS-----YGLENLKKLRA  230 (350)
T ss_dssp             C-SSCCC-EECTTSSTTEEEEEEECTTCT--TCCCCCTTTTTTE-ECCSEEECTTSCC-CCCCS-----SSCTTCCEEEC
T ss_pred             c-ccccc-CCChhhccccchhHHhhccCC--cccCCCHHHhccC-cccchhhcCCCCc-CccCh-----hhhccchHhhh
Confidence            6 34444 455556667889999998644  2333443 45666 9999999999864 55553     36889999999


Q ss_pred             eecCceeeecc
Q 038338          407 ESCYEIVHIVG  417 (421)
Q Consensus       407 ~~c~~L~~l~~  417 (421)
                      .+|.+++++++
T Consensus       231 l~~~~l~~lP~  241 (350)
T 4ay9_X          231 RSTYNLKKLPT  241 (350)
T ss_dssp             TTCTTCCCCCC
T ss_pred             ccCCCcCcCCC
Confidence            99999998875

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.63  E-value=2.4e-15  Score=134.09  Aligned_cols=154  Identities=21%  Similarity=0.220  Sum_probs=132.4

Q ss_pred             cccCccCCCeEEEcCCCCCccCCcccCCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCCChhhhcccCC
Q 038338          119 MEETIRKDPIAISLPQRNIQELPERLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPSSLGRLINL  198 (421)
Q Consensus       119 ~~~~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L  198 (421)
                      +....+++++.|+++++.+..++....+++|+.|++++|.+  ..++.  +..+++|++|++++|.++.+|....  .+|
T Consensus        35 ~~~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i--~~~~~--l~~l~~L~~L~L~~N~l~~l~~~~~--~~L  108 (263)
T 1xeu_A           35 VSQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQI--SDLSP--LKDLTKLEELSVNRNRLKNLNGIPS--ACL  108 (263)
T ss_dssp             ECHHHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCC--CCCGG--GTTCSSCCEEECCSSCCSCCTTCCC--SSC
T ss_pred             cchhhcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCcc--CCChh--hccCCCCCEEECCCCccCCcCcccc--Ccc
Confidence            34566789999999999998888777999999999999986  55555  5889999999999999998876433  899


Q ss_pred             cEEEcccccCCCcccccCcCCCCEEEeeCCCCcccchhhcCCCCCCEEeccCCcCCcccchhhhcCCCCCcEEEcccCCC
Q 038338          199 QTLCLDWCQLEDVAAIGQLKKLEILNLADSNIEQLPLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNSFS  278 (421)
Q Consensus       199 ~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  278 (421)
                      ++|++++|.++..+.++.+++|++|++++|+++.++ .+..+++|++|++++|.. ..++  .+..+++|+.|++++|.+
T Consensus       109 ~~L~L~~N~l~~~~~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~i-~~~~--~l~~l~~L~~L~l~~N~~  184 (263)
T 1xeu_A          109 SRLFLDNNELRDTDSLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEI-TNTG--GLTRLKKVNWIDLTGQKC  184 (263)
T ss_dssp             CEEECCSSCCSBSGGGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSCC-CBCT--TSTTCCCCCEEEEEEEEE
T ss_pred             cEEEccCCccCCChhhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCcC-cchH--HhccCCCCCEEeCCCCcc
Confidence            999999999998667999999999999999999886 689999999999999754 4443  388999999999999876


Q ss_pred             CCcc
Q 038338          279 GWEK  282 (421)
Q Consensus       279 ~~~~  282 (421)
                      ...+
T Consensus       185 ~~~~  188 (263)
T 1xeu_A          185 VNEP  188 (263)
T ss_dssp             ECCC
T ss_pred             cCCc
Confidence            5443

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.63  E-value=3.4e-15  Score=129.37  Aligned_cols=149  Identities=16%  Similarity=0.231  Sum_probs=88.5

Q ss_pred             eEEEcCCCCCccCCcccCCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCCCh-hhhcccCCcEEEcccc
Q 038338          128 IAISLPQRNIQELPERLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPS-SLGRLINLQTLCLDWC  206 (421)
Q Consensus       128 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~~  206 (421)
                      +.++++++.+..+|... .+.++.|++++|.+ ....+...|..+++|++|++++|.++.++. .+..+.+|++|++++|
T Consensus        14 ~~l~~s~n~l~~iP~~~-~~~~~~L~L~~N~l-~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N   91 (220)
T 2v70_A           14 TTVDCSNQKLNKIPEHI-PQYTAELRLNNNEF-TVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN   91 (220)
T ss_dssp             TEEECCSSCCSSCCSCC-CTTCSEEECCSSCC-CEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             CEeEeCCCCcccCccCC-CCCCCEEEcCCCcC-CccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence            36677777766666433 23456677777665 222233444666777777777776666443 5666666777777666


Q ss_pred             cCCC--cccccCcCCCCEEEeeCCCCccc-chhhcCCCCCCEEeccCCcCCcccchhhhcCCCCCcEEEcccCCCC
Q 038338          207 QLED--VAAIGQLKKLEILNLADSNIEQL-PLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNSFSG  279 (421)
Q Consensus       207 ~~~~--~~~~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  279 (421)
                      .++.  +..+..+++|++|++++|++..+ |..+..+++|++|++++|. +..+++..+..+++|+.|++++|.+.
T Consensus        92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~  166 (220)
T 2v70_A           92 RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQ-ITTVAPGAFDTLHSLSTLNLLANPFN  166 (220)
T ss_dssp             CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSC-CCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred             ccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCc-CCEECHHHhcCCCCCCEEEecCcCCc
Confidence            6665  34466666666666666666655 3446666666666666643 33333333566666666666665443

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.62  E-value=4.8e-15  Score=128.43  Aligned_cols=147  Identities=22%  Similarity=0.263  Sum_probs=88.8

Q ss_pred             eEEEcCCCCCccCCcccCCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCC-ChhhhcccCCcEEEcccc
Q 038338          128 IAISLPQRNIQELPERLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSL-PSSLGRLINLQTLCLDWC  206 (421)
Q Consensus       128 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~~  206 (421)
                      +.++..++.+..+|.... ++++.|++++|.+  ..++...|..+++|++|++++|.+..+ |..+..+.+|++|++++|
T Consensus        14 ~~v~c~~~~l~~iP~~l~-~~l~~L~l~~n~i--~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N   90 (220)
T 2v9t_B           14 NIVDCRGKGLTEIPTNLP-ETITEIRLEQNTI--KVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN   90 (220)
T ss_dssp             TEEECTTSCCSSCCSSCC-TTCCEEECCSSCC--CEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCcCcCCCccC-cCCCEEECCCCcC--CCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence            356666666666664332 5667777777664  444444456666777777777766653 555666666777777766


Q ss_pred             cCCC-c-ccccCcCCCCEEEeeCCCCccc-chhhcCCCCCCEEeccCCcCCcccchhhhcCCCCCcEEEcccCCC
Q 038338          207 QLED-V-AAIGQLKKLEILNLADSNIEQL-PLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNSFS  278 (421)
Q Consensus       207 ~~~~-~-~~~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  278 (421)
                      .++. | ..+..+++|++|++++|++..+ |..+..+++|++|++++| .+..++...+..+++|+.|++++|.+
T Consensus        91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~~  164 (220)
T 2v9t_B           91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDN-KLQTIAKGTFSPLRAIQTMHLAQNPF  164 (220)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred             cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCC-cCCEECHHHHhCCCCCCEEEeCCCCc
Confidence            6666 3 3346666666666666666655 334566666666666664 33444444455666666666666543

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.62  E-value=1e-15  Score=131.49  Aligned_cols=129  Identities=26%  Similarity=0.321  Sum_probs=65.7

Q ss_pred             CCCccEEEccCCCCCCCChh-hhcccCCcEEEcccccCCC-c-ccccCcCCCCEEEeeCCCCcccchh-hcCCCCCCEEe
Q 038338          172 TEELKVLSLIGIHFSSLPSS-LGRLINLQTLCLDWCQLED-V-AAIGQLKKLEILNLADSNIEQLPLE-IGQLTGLRLLD  247 (421)
Q Consensus       172 l~~L~~L~l~~~~~~~lp~~-i~~l~~L~~L~l~~~~~~~-~-~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~  247 (421)
                      .++|++|++++|.++.++.. ++.+.+|++|++++|.++. + ..+..+++|++|++++|+++.+|.. +..+++|++|+
T Consensus        27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  106 (208)
T 2o6s_A           27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELA  106 (208)
T ss_dssp             CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEE
Confidence            34556666666655554432 4555556666666555555 2 2345555566666655555555443 34555555555


Q ss_pred             ccCCcCCcccchhhhcCCCCCcEEEcccCCCCCccccCCCCcChhhhcCCCCCCEEEEEecC
Q 038338          248 LTNCWSLQVIAPNVISKLSRLEELYMDNSFSGWEKVEGGSNASLVELKRLTKLTTLEIEVRD  309 (421)
Q Consensus       248 l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~  309 (421)
                      +++| .+..++...+..+++|++|++++|.+...+.        ..+..+++|+.|++++|.
T Consensus       107 L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~--------~~~~~l~~L~~L~l~~N~  159 (208)
T 2o6s_A          107 LNTN-QLQSLPDGVFDKLTQLKDLRLYQNQLKSVPD--------GVFDRLTSLQYIWLHDNP  159 (208)
T ss_dssp             CCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSCCCT--------TTTTTCTTCCEEECCSCC
T ss_pred             cCCC-cCcccCHhHhccCCcCCEEECCCCccceeCH--------HHhccCCCccEEEecCCC
Confidence            5553 2333443334555555555555554443322        224444555555554443

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.60  E-value=3.9e-15  Score=139.19  Aligned_cols=171  Identities=18%  Similarity=0.199  Sum_probs=122.6

Q ss_pred             eEEEcCCCCCccCCcccCCCCccEEEeeecCCCCcccChHHhc-cCCCccEEEccCCCCCCCC-hhhhcccCCcEEEccc
Q 038338          128 IAISLPQRNIQELPERLQCPNLQLFLLFRQGYGPVQISDLFFE-GTEELKVLSLIGIHFSSLP-SSLGRLINLQTLCLDW  205 (421)
Q Consensus       128 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~lp-~~i~~l~~L~~L~l~~  205 (421)
                      +.+++.++.+..+|... .+.++.|++++|.+  ..++...|. ++++|++|++++|.+..++ ..+..+++|++|++++
T Consensus        21 ~~l~c~~~~l~~iP~~~-~~~l~~L~Ls~N~l--~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~   97 (361)
T 2xot_A           21 NILSCSKQQLPNVPQSL-PSYTALLDLSHNNL--SRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS   97 (361)
T ss_dssp             TEEECCSSCCSSCCSSC-CTTCSEEECCSSCC--CEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CEEEeCCCCcCccCccC-CCCCCEEECCCCCC--CccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence            46777777777777543 24578888888875  455555555 7888888888888887765 4577888888888888


Q ss_pred             ccCCC--cccccCcCCCCEEEeeCCCCccc-chhhcCCCCCCEEeccCCcCCcccchhhh---cCCCCCcEEEcccCCCC
Q 038338          206 CQLED--VAAIGQLKKLEILNLADSNIEQL-PLEIGQLTGLRLLDLTNCWSLQVIAPNVI---SKLSRLEELYMDNSFSG  279 (421)
Q Consensus       206 ~~~~~--~~~~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~l~~~~~~~~~~~~~l---~~l~~L~~L~l~~~~~~  279 (421)
                      |.+..  +..+..+++|++|++++|++..+ |..+..+++|++|++++| .+..+|...+   ..+++|+.|++++|.+.
T Consensus        98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~  176 (361)
T 2xot_A           98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQN-QISRFPVELIKDGNKLPKLMLLDLSSNKLK  176 (361)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCSCCGGGTC----CTTCCEEECCSSCCC
T ss_pred             CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCC-cCCeeCHHHhcCcccCCcCCEEECCCCCCC
Confidence            88777  44677888888888888888866 455778888888888885 4556666544   56788888888888777


Q ss_pred             CccccCCCCcChhhhcCCCC--CCEEEEEecCc
Q 038338          280 WEKVEGGSNASLVELKRLTK--LTTLEIEVRDA  310 (421)
Q Consensus       280 ~~~~~~~~~~~~~~l~~l~~--L~~L~l~~~~~  310 (421)
                      ..+.        ..+..++.  ++.|++.+|.+
T Consensus       177 ~l~~--------~~~~~l~~~~l~~l~l~~N~~  201 (361)
T 2xot_A          177 KLPL--------TDLQKLPAWVKNGLYLHNNPL  201 (361)
T ss_dssp             CCCH--------HHHHHSCHHHHTTEECCSSCE
T ss_pred             ccCH--------HHhhhccHhhcceEEecCCCc
Confidence            6544        45666665  36777777765

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.60  E-value=4.9e-15  Score=128.33  Aligned_cols=147  Identities=18%  Similarity=0.203  Sum_probs=100.8

Q ss_pred             cEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCCCh-hhhcccCCcEEEcccccCCC--cccccCcCCCCEEEee
Q 038338          150 QLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPS-SLGRLINLQTLCLDWCQLED--VAAIGQLKKLEILNLA  226 (421)
Q Consensus       150 ~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~  226 (421)
                      +.++..++.+  ..+|..+   .++|++|++++|.++.++. .+..+.+|++|++++|.+..  |..+.++++|++|+++
T Consensus        14 ~~v~c~~~~l--~~iP~~l---~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls   88 (220)
T 2v9t_B           14 NIVDCRGKGL--TEIPTNL---PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLY   88 (220)
T ss_dssp             TEEECTTSCC--SSCCSSC---CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECC
T ss_pred             CEEEcCCCCc--CcCCCcc---CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECC
Confidence            4566666553  5556543   3677778888777777554 56777778888887777776  5677777778888888


Q ss_pred             CCCCcccchh-hcCCCCCCEEeccCCcCCcccchhhhcCCCCCcEEEcccCCCCCccccCCCCcChhhhcCCCCCCEEEE
Q 038338          227 DSNIEQLPLE-IGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNSFSGWEKVEGGSNASLVELKRLTKLTTLEI  305 (421)
Q Consensus       227 ~~~l~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l  305 (421)
                      +|+++.+|.. +..+++|++|++++|. +..++...+..+++|++|++++|.+.....        ..+..+++|+.|++
T Consensus        89 ~N~l~~l~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~--------~~~~~l~~L~~L~L  159 (220)
T 2v9t_B           89 GNKITELPKSLFEGLFSLQLLLLNANK-INCLRVDAFQDLHNLNLLSLYDNKLQTIAK--------GTFSPLRAIQTMHL  159 (220)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCT--------TTTTTCTTCCEEEC
T ss_pred             CCcCCccCHhHccCCCCCCEEECCCCC-CCEeCHHHcCCCCCCCEEECCCCcCCEECH--------HHHhCCCCCCEEEe
Confidence            7777777765 4667777777777753 444444446777777777777777665544        44666777777777


Q ss_pred             EecCc
Q 038338          306 EVRDA  310 (421)
Q Consensus       306 ~~~~~  310 (421)
                      ++|.+
T Consensus       160 ~~N~~  164 (220)
T 2v9t_B          160 AQNPF  164 (220)
T ss_dssp             CSSCE
T ss_pred             CCCCc
Confidence            77765

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.60  E-value=7.6e-15  Score=127.12  Aligned_cols=148  Identities=16%  Similarity=0.145  Sum_probs=112.7

Q ss_pred             cEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCCC--hhhhcccCCcEEEcccccCCC--cccccCcCCCCEEEe
Q 038338          150 QLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLP--SSLGRLINLQTLCLDWCQLED--VAAIGQLKKLEILNL  225 (421)
Q Consensus       150 ~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp--~~i~~l~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l  225 (421)
                      +.++++++.+  ..+|..+   ...+++|++++|.++.++  ..+..+++|++|++++|.++.  +..+.++++|++|++
T Consensus        14 ~~l~~s~n~l--~~iP~~~---~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~L   88 (220)
T 2v70_A           14 TTVDCSNQKL--NKIPEHI---PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILL   88 (220)
T ss_dssp             TEEECCSSCC--SSCCSCC---CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred             CEeEeCCCCc--ccCccCC---CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEEC
Confidence            5788888775  5566644   456788888888888763  237888888888888888887  457888888888888


Q ss_pred             eCCCCcccchh-hcCCCCCCEEeccCCcCCcccchhhhcCCCCCcEEEcccCCCCCccccCCCCcChhhhcCCCCCCEEE
Q 038338          226 ADSNIEQLPLE-IGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNSFSGWEKVEGGSNASLVELKRLTKLTTLE  304 (421)
Q Consensus       226 ~~~~l~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~  304 (421)
                      ++|.+..++.. +..+++|++|++++|. +..+++..+..+++|++|++++|.+....+        ..+..+++|+.|+
T Consensus        89 s~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~--------~~~~~l~~L~~L~  159 (220)
T 2v70_A           89 TSNRLENVQHKMFKGLESLKTLMLRSNR-ITCVGNDSFIGLSSVRLLSLYDNQITTVAP--------GAFDTLHSLSTLN  159 (220)
T ss_dssp             CSSCCCCCCGGGGTTCSSCCEEECTTSC-CCCBCTTSSTTCTTCSEEECTTSCCCCBCT--------TTTTTCTTCCEEE
T ss_pred             CCCccCccCHhHhcCCcCCCEEECCCCc-CCeECHhHcCCCccCCEEECCCCcCCEECH--------HHhcCCCCCCEEE
Confidence            88888877665 7788888888888864 444444447888888888888888776654        5677788888888


Q ss_pred             EEecCcc
Q 038338          305 IEVRDAE  311 (421)
Q Consensus       305 l~~~~~~  311 (421)
                      +++|.+.
T Consensus       160 L~~N~l~  166 (220)
T 2v70_A          160 LLANPFN  166 (220)
T ss_dssp             CCSCCEE
T ss_pred             ecCcCCc
Confidence            8888764

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.58  E-value=1.1e-14  Score=136.02  Aligned_cols=155  Identities=22%  Similarity=0.277  Sum_probs=108.1

Q ss_pred             cEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCCChh-hh-cccCCcEEEcccccCCC--cccccCcCCCCEEEe
Q 038338          150 QLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPSS-LG-RLINLQTLCLDWCQLED--VAAIGQLKKLEILNL  225 (421)
Q Consensus       150 ~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~-i~-~l~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l  225 (421)
                      ++++++++.+  ..+|..+   ...+++|++++|.++.++.. +. .+.+|++|++++|.+..  +..+.++++|++|++
T Consensus        21 ~~l~c~~~~l--~~iP~~~---~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~L   95 (361)
T 2xot_A           21 NILSCSKQQL--PNVPQSL---PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDL   95 (361)
T ss_dssp             TEEECCSSCC--SSCCSSC---CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred             CEEEeCCCCc--CccCccC---CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEEC
Confidence            5677777764  5566543   35678888888888776544 44 78888888888888877  456888888888888


Q ss_pred             eCCCCcccchh-hcCCCCCCEEeccCCcCCcccchhhhcCCCCCcEEEcccCCCCCccccCCCCcChhhhcCCCCCCEEE
Q 038338          226 ADSNIEQLPLE-IGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNSFSGWEKVEGGSNASLVELKRLTKLTTLE  304 (421)
Q Consensus       226 ~~~~l~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~  304 (421)
                      ++|++..++.. +..+++|++|++++|. +..+++..+..+++|+.|++++|.+...+..     .+..+..+++|+.|+
T Consensus        96 s~N~l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~-----~~~~~~~l~~L~~L~  169 (361)
T 2xot_A           96 SSNHLHTLDEFLFSDLQALEVLLLYNNH-IVVVDRNAFEDMAQLQKLYLSQNQISRFPVE-----LIKDGNKLPKLMLLD  169 (361)
T ss_dssp             CSSCCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCSCCGG-----GTC----CTTCCEEE
T ss_pred             CCCcCCcCCHHHhCCCcCCCEEECCCCc-ccEECHHHhCCcccCCEEECCCCcCCeeCHH-----HhcCcccCCcCCEEE
Confidence            88888877653 6778888888888854 4445444477888888888888877765431     111125677888888


Q ss_pred             EEecCccccCC
Q 038338          305 IEVRDAEILLP  315 (421)
Q Consensus       305 l~~~~~~~~~~  315 (421)
                      +++|.+..+|.
T Consensus       170 L~~N~l~~l~~  180 (361)
T 2xot_A          170 LSSNKLKKLPL  180 (361)
T ss_dssp             CCSSCCCCCCH
T ss_pred             CCCCCCCccCH
Confidence            88887776664

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.57  E-value=1.9e-14  Score=125.45  Aligned_cols=148  Identities=21%  Similarity=0.225  Sum_probs=108.7

Q ss_pred             ccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCC-ChhhhcccCCcEEEcccccCCC-c-ccccCcCCCCEEEe
Q 038338          149 LQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSL-PSSLGRLINLQTLCLDWCQLED-V-AAIGQLKKLEILNL  225 (421)
Q Consensus       149 L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~~~~~~-~-~~~~~l~~L~~L~l  225 (421)
                      .+.++.+++..  ..+|..+   .++|++|++++|.+..+ |..+..+.+|++|++++|.+.. + ..+..+++|++|++
T Consensus        21 ~~~v~c~~~~l--~~ip~~~---~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~L   95 (229)
T 3e6j_A           21 GTTVDCRSKRH--ASVPAGI---PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDL   95 (229)
T ss_dssp             TTEEECTTSCC--SSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCEeEccCCCc--CccCCCC---CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEEC
Confidence            45666666653  5666543   47788888888888775 5567788888888888888877 4 45678888888888


Q ss_pred             eCCCCcccchh-hcCCCCCCEEeccCCcCCcccchhhhcCCCCCcEEEcccCCCCCccccCCCCcChhhhcCCCCCCEEE
Q 038338          226 ADSNIEQLPLE-IGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNSFSGWEKVEGGSNASLVELKRLTKLTTLE  304 (421)
Q Consensus       226 ~~~~l~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~  304 (421)
                      ++|+++.+|.. +..+++|++|++++| .+..+|.. +..+++|++|++++|.+...+.        ..+..+++|+.|+
T Consensus        96 s~N~l~~l~~~~~~~l~~L~~L~Ls~N-~l~~lp~~-~~~l~~L~~L~L~~N~l~~~~~--------~~~~~l~~L~~L~  165 (229)
T 3e6j_A           96 GTNQLTVLPSAVFDRLVHLKELFMCCN-KLTELPRG-IERLTHLTHLALDQNQLKSIPH--------GAFDRLSSLTHAY  165 (229)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSS-CCCSCCTT-GGGCTTCSEEECCSSCCCCCCT--------TTTTTCTTCCEEE
T ss_pred             CCCcCCccChhHhCcchhhCeEeccCC-cccccCcc-cccCCCCCEEECCCCcCCccCH--------HHHhCCCCCCEEE
Confidence            88888877665 567888888888885 44577765 6788888888888887765543        4567777888888


Q ss_pred             EEecCcc
Q 038338          305 IEVRDAE  311 (421)
Q Consensus       305 l~~~~~~  311 (421)
                      +.+|.+.
T Consensus       166 l~~N~~~  172 (229)
T 3e6j_A          166 LFGNPWD  172 (229)
T ss_dssp             CTTSCBC
T ss_pred             eeCCCcc
Confidence            8777764

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.56  E-value=2.1e-14  Score=118.89  Aligned_cols=139  Identities=23%  Similarity=0.196  Sum_probs=92.2

Q ss_pred             CCCccEEEccCCCCC--CCChhhhcccCCcEEEcccccCCCcccccCcCCCCEEEeeCCCCcc-cchhhcCCCCCCEEec
Q 038338          172 TEELKVLSLIGIHFS--SLPSSLGRLINLQTLCLDWCQLEDVAAIGQLKKLEILNLADSNIEQ-LPLEIGQLTGLRLLDL  248 (421)
Q Consensus       172 l~~L~~L~l~~~~~~--~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~l~~-lp~~~~~l~~L~~L~l  248 (421)
                      .++|++|++++|.+.  .+|..+..+++|++|++++|.++....+..+++|++|++++|.+.. +|..+..+++|++|++
T Consensus        23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  102 (168)
T 2ell_A           23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNL  102 (168)
T ss_dssp             TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEEC
T ss_pred             cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEec
Confidence            466777777777776  5676667777777777777776666666777777777777777775 5655666777777777


Q ss_pred             cCCcCCcccch-hhhcCCCCCcEEEcccCCCCCccccCCCCcChhhhcCCCCCCEEEEEecCccccCCc
Q 038338          249 TNCWSLQVIAP-NVISKLSRLEELYMDNSFSGWEKVEGGSNASLVELKRLTKLTTLEIEVRDAEILLPD  316 (421)
Q Consensus       249 ~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~  316 (421)
                      ++| .+..++. ..+..+++|++|++++|.+...+.     .....+..+++|+.|+++.|...++|..
T Consensus       103 s~N-~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~-----~~~~~~~~l~~L~~L~l~~n~~~~~~~~  165 (168)
T 2ell_A          103 SGN-KLKDISTLEPLKKLECLKSLDLFNCEVTNLND-----YRESVFKLLPQLTYLDGYDREDQEAPDS  165 (168)
T ss_dssp             BSS-SCCSSGGGGGGSSCSCCCEEECCSSGGGTSTT-----HHHHHHTTCSSCCEETTEETTSCBCCSS
T ss_pred             cCC-ccCcchhHHHHhcCCCCCEEEeeCCcCcchHH-----HHHHHHHhCccCcEecCCCCChhhcccc
Confidence            775 3344431 236677777777777776554321     0012466777777777777777666653

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.55  E-value=4.4e-17  Score=160.69  Aligned_cols=168  Identities=17%  Similarity=0.150  Sum_probs=85.0

Q ss_pred             CCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCC-------------CC-CCChhhhcccCCcEEE-cccccCC
Q 038338          145 QCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIH-------------FS-SLPSSLGRLINLQTLC-LDWCQLE  209 (421)
Q Consensus       145 ~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-------------~~-~lp~~i~~l~~L~~L~-l~~~~~~  209 (421)
                      .+++|+.|++++|.+  ..+|..+ +.+++|+.|+++++.             .. ..|..++.+.+|+.|+ ++.+.+.
T Consensus       347 ~~~~L~~L~Ls~n~L--~~Lp~~i-~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~  423 (567)
T 1dce_A          347 TDEQLFRCELSVEKS--TVLQSEL-ESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD  423 (567)
T ss_dssp             TTTTSSSCCCCHHHH--HHHHHHH-HHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred             cCccceeccCChhhH--HhhHHHH-HHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc
Confidence            456666677766663  4555554 556666666665542             11 1344455555555555 3333222


Q ss_pred             C-c------ccccCc--CCCCEEEeeCCCCcccchhhcCCCCCCEEeccCCcCCcccchhhhcCCCCCcEEEcccCCCCC
Q 038338          210 D-V------AAIGQL--KKLEILNLADSNIEQLPLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNSFSGW  280 (421)
Q Consensus       210 ~-~------~~~~~l--~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  280 (421)
                      . +      ..+..+  ..|+.|++++|+++.+|. ++.+++|++|++++|. +..+|.. ++.+++|+.|++++|.++.
T Consensus       424 ~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~-l~~lp~~-~~~l~~L~~L~Ls~N~l~~  500 (567)
T 1dce_A          424 DLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNR-LRALPPA-LAALRCLEVLQASDNALEN  500 (567)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSC-CCCCCGG-GGGCTTCCEEECCSSCCCC
T ss_pred             hhhhhhhhcccccccCccCceEEEecCCCCCCCcC-ccccccCcEeecCccc-ccccchh-hhcCCCCCEEECCCCCCCC
Confidence            1 1      011111  235555555555555554 5555555555555542 3345543 4555555555555555443


Q ss_pred             ccccCCCCcChhhhcCCCCCCEEEEEecCcccc--CCcc-cccCCceEEEE
Q 038338          281 EKVEGGSNASLVELKRLTKLTTLEIEVRDAEIL--LPDF-VSVELQRYRIR  328 (421)
Q Consensus       281 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~--~~~~-~~~~L~~L~l~  328 (421)
                      .          ..++.+++|+.|++++|.+..+  |..+ .+++|+.|+++
T Consensus       501 l----------p~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~  541 (567)
T 1dce_A          501 V----------DGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQ  541 (567)
T ss_dssp             C----------GGGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECT
T ss_pred             C----------cccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEec
Confidence            2          1355555555555555555544  4443 33555555554

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.55  E-value=2.2e-15  Score=153.15  Aligned_cols=155  Identities=17%  Similarity=0.174  Sum_probs=100.5

Q ss_pred             cCCCeEEEcCCCCCccCCccc-CCCCccEEEee-----ecCCCCcccChHHhccCCCccEEEccCCCCCCCChhhhcccC
Q 038338          124 RKDPIAISLPQRNIQELPERL-QCPNLQLFLLF-----RQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPSSLGRLIN  197 (421)
Q Consensus       124 ~~~l~~l~l~~~~~~~l~~~~-~~~~L~~L~l~-----~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~  197 (421)
                      .+.++++++.++.+...+... ....|+.+.+.     .+..   .++...+..++.|++|+|++|.+..+|..+..+.+
T Consensus       172 ~~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~---~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~  248 (727)
T 4b8c_D          172 TPLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRM---VMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDF  248 (727)
T ss_dssp             -----------------------------------------------------CCCCCCEEECTTSCCSCCCGGGGGCCS
T ss_pred             CCccceEEeeCCCCCcchhhHhhcCccCcccccCccccccce---ecChhhhccCCCCcEEECCCCCCCCCChhhcCCCC
Confidence            356788888877775544322 33333333332     2322   24445568899999999999999999988889999


Q ss_pred             CcEEEcccccCCC-cccccCcCCCCEEEeeCCCCcccchhhcCCCCCCEEeccCCcCCcccchhhhcCCCCCcEEEcccC
Q 038338          198 LQTLCLDWCQLED-VAAIGQLKKLEILNLADSNIEQLPLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNS  276 (421)
Q Consensus       198 L~~L~l~~~~~~~-~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~  276 (421)
                      |++|++++|.++. |..++++++|++|+|++|.++.+|..++.+++|++|++++| .++.+|.. ++.+++|++|++++|
T Consensus       249 L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N-~l~~lp~~-~~~l~~L~~L~L~~N  326 (727)
T 4b8c_D          249 LTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDN-MVTTLPWE-FGNLCNLQFLGVEGN  326 (727)
T ss_dssp             CSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSS-CCCCCCSS-TTSCTTCCCEECTTS
T ss_pred             CCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCC-CCCccChh-hhcCCCccEEeCCCC
Confidence            9999999999988 88899999999999999999999999999999999999996 55688877 899999999999999


Q ss_pred             CCCCccc
Q 038338          277 FSGWEKV  283 (421)
Q Consensus       277 ~~~~~~~  283 (421)
                      .+...++
T Consensus       327 ~l~~~~p  333 (727)
T 4b8c_D          327 PLEKQFL  333 (727)
T ss_dssp             CCCSHHH
T ss_pred             ccCCCCh
Confidence            8876654

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.53  E-value=9.2e-17  Score=158.40  Aligned_cols=196  Identities=17%  Similarity=0.100  Sum_probs=117.2

Q ss_pred             ccCCCccEEEccCCCCCCCChhhhcccCCcEEEccccc-------------CCC--cccccCcCCCCEEE-eeCCCCccc
Q 038338          170 EGTEELKVLSLIGIHFSSLPSSLGRLINLQTLCLDWCQ-------------LED--VAAIGQLKKLEILN-LADSNIEQL  233 (421)
Q Consensus       170 ~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~-------------~~~--~~~~~~l~~L~~L~-l~~~~l~~l  233 (421)
                      ...++|+.|++++|.++.+|..++.+.+|+.|++++|.             ...  |..++++++|+.|+ ++.+.+..+
T Consensus       346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L  425 (567)
T 1dce_A          346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDL  425 (567)
T ss_dssp             STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred             ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchh
Confidence            45788889999999888899999999999999886653             222  56667777777776 444433322


Q ss_pred             ch------hhcC--CCCCCEEeccCCcCCcccchhhhcCCCCCcEEEcccCCCCCccccCCCCcChhhhcCCCCCCEEEE
Q 038338          234 PL------EIGQ--LTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNSFSGWEKVEGGSNASLVELKRLTKLTTLEI  305 (421)
Q Consensus       234 p~------~~~~--l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l  305 (421)
                      +.      .+..  ...|+.|++++| .+..+|.  ++.+++|+.|++++|.+...+         ..++.+++|+.|++
T Consensus       426 ~~l~l~~n~i~~l~~~~L~~L~Ls~n-~l~~lp~--~~~l~~L~~L~Ls~N~l~~lp---------~~~~~l~~L~~L~L  493 (567)
T 1dce_A          426 RSKFLLENSVLKMEYADVRVLHLAHK-DLTVLCH--LEQLLLVTHLDLSHNRLRALP---------PALAALRCLEVLQA  493 (567)
T ss_dssp             HHHHHHHHHHHHHHHTTCSEEECTTS-CCSSCCC--GGGGTTCCEEECCSSCCCCCC---------GGGGGCTTCCEEEC
T ss_pred             hhhhhhcccccccCccCceEEEecCC-CCCCCcC--ccccccCcEeecCcccccccc---------hhhhcCCCCCEEEC
Confidence            21      1111  124777777775 4445654  667777777777777666322         45667777777777


Q ss_pred             EecCccccCCcccccCCceEEEEEcCCccchh-hhhhchhhhceeEEEcCCcccccccchhHHHHhhhcccEEE
Q 038338          306 EVRDAEILLPDFVSVELQRYRIRIGDKLEYEI-DQLLVKSEALRLMMLKGLEKVSILQENDGTKMLLQRTEDLW  378 (421)
Q Consensus       306 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~  378 (421)
                      ++|.++.+|....+++|+.|+++. +.+.... |..++.+++|+.|++++|.+....+....+...+|+|+.|+
T Consensus       494 s~N~l~~lp~l~~l~~L~~L~Ls~-N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~  566 (567)
T 1dce_A          494 SDNALENVDGVANLPRLQELLLCN-NRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL  566 (567)
T ss_dssp             CSSCCCCCGGGTTCSSCCEEECCS-SCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred             CCCCCCCCcccCCCCCCcEEECCC-CCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence            777776666222446666666653 2333222 55566666666666666654332222222222235555553

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.52  E-value=4.4e-14  Score=116.92  Aligned_cols=124  Identities=21%  Similarity=0.205  Sum_probs=65.3

Q ss_pred             cCCCeEEEcCCCCCc--cCCccc-CCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCC-CChhhhcccCCc
Q 038338          124 RKDPIAISLPQRNIQ--ELPERL-QCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSS-LPSSLGRLINLQ  199 (421)
Q Consensus       124 ~~~l~~l~l~~~~~~--~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-lp~~i~~l~~L~  199 (421)
                      .+++++|++++|.+.  .+|... .+++|+.|++++|.+  ..+  ..+..+++|++|++++|.+.. +|..+..+++|+
T Consensus        23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l--~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~   98 (168)
T 2ell_A           23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGL--ISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLT   98 (168)
T ss_dssp             TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCC--CCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCC
T ss_pred             cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCC--CCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCC
Confidence            355666666666654  555442 555555555555554  222  223455555555555555555 444444455555


Q ss_pred             EEEcccccCCC-c--ccccCcCCCCEEEeeCCCCcccch----hhcCCCCCCEEeccCC
Q 038338          200 TLCLDWCQLED-V--AAIGQLKKLEILNLADSNIEQLPL----EIGQLTGLRLLDLTNC  251 (421)
Q Consensus       200 ~L~l~~~~~~~-~--~~~~~l~~L~~L~l~~~~l~~lp~----~~~~l~~L~~L~l~~~  251 (421)
                      +|++++|.+.. +  ..+..+++|++|++++|.+..+|.    .+..+++|++|++++|
T Consensus        99 ~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n  157 (168)
T 2ell_A           99 HLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDR  157 (168)
T ss_dssp             EEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEET
T ss_pred             EEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCC
Confidence            55555555554 3  455555555555555555554443    3445555555555543

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.50  E-value=7.8e-14  Score=112.91  Aligned_cols=122  Identities=21%  Similarity=0.220  Sum_probs=80.3

Q ss_pred             cCCCeEEEcCCCCCc--cCCccc-CCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCC-CChhhhcccCCc
Q 038338          124 RKDPIAISLPQRNIQ--ELPERL-QCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSS-LPSSLGRLINLQ  199 (421)
Q Consensus       124 ~~~l~~l~l~~~~~~--~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-lp~~i~~l~~L~  199 (421)
                      .+++++|+++++.+.  .+|... .+++|+.|++++|.+  ..+  ..+..+++|++|++++|.+.. +|..++.+++|+
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l--~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~   91 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGL--TSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLT   91 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCC--CCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCC
T ss_pred             CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCC--CCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCC
Confidence            356777777777775  566543 667777777777765  223  224667777777777777766 566566677777


Q ss_pred             EEEcccccCCC-c--ccccCcCCCCEEEeeCCCCcccch----hhcCCCCCCEEecc
Q 038338          200 TLCLDWCQLED-V--AAIGQLKKLEILNLADSNIEQLPL----EIGQLTGLRLLDLT  249 (421)
Q Consensus       200 ~L~l~~~~~~~-~--~~~~~l~~L~~L~l~~~~l~~lp~----~~~~l~~L~~L~l~  249 (421)
                      +|++++|.++. +  ..++.+++|++|++++|.++.+|.    .+..+++|++|+++
T Consensus        92 ~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           92 HLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             EEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             EEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence            77777777666 3  666677777777777776666554    45666666666654

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.48  E-value=6.3e-14  Score=113.46  Aligned_cols=105  Identities=22%  Similarity=0.236  Sum_probs=48.4

Q ss_pred             CCccEEEccCCCCC--CCChhhhcccCCcEEEcccccCCCcccccCcCCCCEEEeeCCCCcc-cchhhcCCCCCCEEecc
Q 038338          173 EELKVLSLIGIHFS--SLPSSLGRLINLQTLCLDWCQLEDVAAIGQLKKLEILNLADSNIEQ-LPLEIGQLTGLRLLDLT  249 (421)
Q Consensus       173 ~~L~~L~l~~~~~~--~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~l~~-lp~~~~~l~~L~~L~l~  249 (421)
                      ++|+.|++++|.+.  .+|..++.+++|++|++++|.++....++++++|++|++++|.+.. +|..+..+++|++|+++
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls   96 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLS   96 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCCTTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECT
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCchhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECC
Confidence            44445555555444  3444444455555555555544444444445555555555555443 44444445555555555


Q ss_pred             CCcCCcccc-hhhhcCCCCCcEEEcccCCC
Q 038338          250 NCWSLQVIA-PNVISKLSRLEELYMDNSFS  278 (421)
Q Consensus       250 ~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~  278 (421)
                      +|. +..++ ...++.+++|++|++++|.+
T Consensus        97 ~N~-i~~~~~~~~~~~l~~L~~L~l~~N~l  125 (149)
T 2je0_A           97 GNK-IKDLSTIEPLKKLENLKSLDLFNCEV  125 (149)
T ss_dssp             TSC-CCSHHHHGGGGGCTTCCEEECTTCGG
T ss_pred             CCc-CCChHHHHHHhhCCCCCEEeCcCCcc
Confidence            532 22221 01244455555555555443

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.47  E-value=1.2e-13  Score=115.12  Aligned_cols=126  Identities=17%  Similarity=0.131  Sum_probs=75.6

Q ss_pred             CccCCCeEEEcCCCCCccCCcccCCC-CccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCCChhh-hcccCCc
Q 038338          122 TIRKDPIAISLPQRNIQELPERLQCP-NLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPSSL-GRLINLQ  199 (421)
Q Consensus       122 ~~~~~l~~l~l~~~~~~~l~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i-~~l~~L~  199 (421)
                      ..+.+++.|++++|.+..++....+. +|+.|++++|.+  ..++  .+..+++|++|++++|.++.+|+.+ +.+++|+
T Consensus        16 ~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l--~~~~--~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~   91 (176)
T 1a9n_A           16 TNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEI--RKLD--GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT   91 (176)
T ss_dssp             ECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCC--CEEC--CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred             CCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCC--Cccc--ccccCCCCCEEECCCCcccccCcchhhcCCCCC
Confidence            34556677777777666565544333 666666666664  2231  2355666666666666666655443 5666666


Q ss_pred             EEEcccccCCC-cc--cccCcCCCCEEEeeCCCCcccchh----hcCCCCCCEEeccCC
Q 038338          200 TLCLDWCQLED-VA--AIGQLKKLEILNLADSNIEQLPLE----IGQLTGLRLLDLTNC  251 (421)
Q Consensus       200 ~L~l~~~~~~~-~~--~~~~l~~L~~L~l~~~~l~~lp~~----~~~l~~L~~L~l~~~  251 (421)
                      +|++++|.+.. |.  .+..+++|++|++++|.+..+|..    +..+++|++|++++|
T Consensus        92 ~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n  150 (176)
T 1a9n_A           92 ELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKV  150 (176)
T ss_dssp             EEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred             EEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcC
Confidence            66666666655 43  566666666666666666665553    556666666666554

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.45  E-value=2.9e-13  Score=114.50  Aligned_cols=123  Identities=20%  Similarity=0.194  Sum_probs=59.1

Q ss_pred             cEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCCChh--hhcccCCcEEEcccccCCC--cccccCcCCCCEEEe
Q 038338          150 QLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPSS--LGRLINLQTLCLDWCQLED--VAAIGQLKKLEILNL  225 (421)
Q Consensus       150 ~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~--i~~l~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l  225 (421)
                      ++++++++.+  ..+|..+   ..+|++|++++|.+..++..  ++.+++|++|++++|.++.  |..+.++++|++|++
T Consensus        11 ~~l~~s~~~l--~~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L   85 (192)
T 1w8a_A           11 TTVDCTGRGL--KEIPRDI---PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQL   85 (192)
T ss_dssp             TEEECTTSCC--SSCCSCC---CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred             CEEEcCCCCc--CcCccCC---CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEEC
Confidence            4455555443  3444432   12555555555555554432  4555555555555555544  344555555555555


Q ss_pred             eCCCCcccchh-hcCCCCCCEEeccCCcCCcccchhhhcCCCCCcEEEcccCCC
Q 038338          226 ADSNIEQLPLE-IGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNSFS  278 (421)
Q Consensus       226 ~~~~l~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  278 (421)
                      ++|+++.++.. +..+++|++|++++|...+..|. .+..+++|++|++++|.+
T Consensus        86 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~L~~N~l  138 (192)
T 1w8a_A           86 GENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPG-SFEHLNSLTSLNLASNPF  138 (192)
T ss_dssp             CSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTT-SSTTCTTCCEEECTTCCB
T ss_pred             CCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHH-HhhcCCCCCEEEeCCCCc
Confidence            55555544332 44555555555555432222222 244555555555555443

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.45  E-value=2.3e-13  Score=113.45  Aligned_cols=105  Identities=19%  Similarity=0.246  Sum_probs=46.5

Q ss_pred             CCCccEEEccCCCCCCCChhhhccc-CCcEEEcccccCCCcccccCcCCCCEEEeeCCCCcccchhh-cCCCCCCEEecc
Q 038338          172 TEELKVLSLIGIHFSSLPSSLGRLI-NLQTLCLDWCQLEDVAAIGQLKKLEILNLADSNIEQLPLEI-GQLTGLRLLDLT  249 (421)
Q Consensus       172 l~~L~~L~l~~~~~~~lp~~i~~l~-~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~-~~l~~L~~L~l~  249 (421)
                      +.+|++|++++|.++.+|. +..+. +|++|++++|.++....++.+++|++|++++|.++.+|+.+ ..+++|++|+++
T Consensus        18 ~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~   96 (176)
T 1a9n_A           18 AVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILT   96 (176)
T ss_dssp             TTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECC
T ss_pred             cCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCcccccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECC
Confidence            4444444444444444432 22222 44455544444444334444445555555555444444332 444555555554


Q ss_pred             CCcCCcccch-hhhcCCCCCcEEEcccCCC
Q 038338          250 NCWSLQVIAP-NVISKLSRLEELYMDNSFS  278 (421)
Q Consensus       250 ~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~  278 (421)
                      +| .++.+|. ..++.+++|+.|++++|.+
T Consensus        97 ~N-~i~~~~~~~~l~~l~~L~~L~l~~N~i  125 (176)
T 1a9n_A           97 NN-SLVELGDLDPLASLKSLTYLCILRNPV  125 (176)
T ss_dssp             SC-CCCCGGGGGGGGGCTTCCEEECCSSGG
T ss_pred             CC-cCCcchhhHhhhcCCCCCEEEecCCCC
Confidence            43 2233332 1134444455555544443

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.45  E-value=4.1e-14  Score=143.78  Aligned_cols=133  Identities=22%  Similarity=0.236  Sum_probs=109.6

Q ss_pred             CCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCCChhhhcccCCcEEEcccccCCC-cccccCcCCCCEE
Q 038338          145 QCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPSSLGRLINLQTLCLDWCQLED-VAAIGQLKKLEIL  223 (421)
Q Consensus       145 ~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~-~~~~~~l~~L~~L  223 (421)
                      .++.|+.|++++|.+  ..++..++ ++++|++|+|++|.++.+|..++.+.+|++|++++|.++. |..++++++|++|
T Consensus       222 ~l~~L~~L~Ls~n~l--~~l~~~~~-~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L  298 (727)
T 4b8c_D          222 DDQLWHALDLSNLQI--FNISANIF-KYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYF  298 (727)
T ss_dssp             CCCCCCEEECTTSCC--SCCCGGGG-GCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEE
T ss_pred             cCCCCcEEECCCCCC--CCCChhhc-CCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEE
Confidence            789999999999986  57887774 7999999999999999999999999999999999999999 9999999999999


Q ss_pred             EeeCCCCcccchhhcCCCCCCEEeccCCcCCcccchhhhcCCC-CCcEEEcccCCCCCc
Q 038338          224 NLADSNIEQLPLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLS-RLEELYMDNSFSGWE  281 (421)
Q Consensus       224 ~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~~~~  281 (421)
                      +|++|.++.+|.+++.+++|++|++++|...+..|.. +..+. .+..+++++|.+...
T Consensus       299 ~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~-~~~~~~~~~~l~l~~N~l~~~  356 (727)
T 4b8c_D          299 YFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKI-LTEKSVTGLIFYLRDNRPEIP  356 (727)
T ss_dssp             ECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHHHHH-HHHHHHHHHHHHHHHCCCCCC
T ss_pred             ECCCCCCCccChhhhcCCCccEEeCCCCccCCCChHH-HhhcchhhhHHhhccCcccCc
Confidence            9999999999999999999999999998665555543 33321 112245555555433

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.44  E-value=7e-13  Score=112.16  Aligned_cols=103  Identities=22%  Similarity=0.336  Sum_probs=49.6

Q ss_pred             CccEEEccCCCCCCCChhhhcccCCcEEEcccccCCC--cccccCcCCCCEEEeeCCCCcccch-hhcCCCCCCEEeccC
Q 038338          174 ELKVLSLIGIHFSSLPSSLGRLINLQTLCLDWCQLED--VAAIGQLKKLEILNLADSNIEQLPL-EIGQLTGLRLLDLTN  250 (421)
Q Consensus       174 ~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~  250 (421)
                      +|++|++++|.++.+|..+..+.+|++|++++|.++.  +..+.++++|++|++++|.++.++. .+..+++|++|++++
T Consensus        32 ~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~  111 (193)
T 2wfh_A           32 DVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHG  111 (193)
T ss_dssp             TCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCS
T ss_pred             CCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCC
Confidence            4455555555554444445555555555555555444  2344555555555555555554433 244455555555555


Q ss_pred             CcCCcccchhhhcCCCCCcEEEcccCC
Q 038338          251 CWSLQVIAPNVISKLSRLEELYMDNSF  277 (421)
Q Consensus       251 ~~~~~~~~~~~l~~l~~L~~L~l~~~~  277 (421)
                      | .+..++...+..+++|+.|++++|.
T Consensus       112 N-~l~~~~~~~~~~l~~L~~L~L~~N~  137 (193)
T 2wfh_A          112 N-DISVVPEGAFNDLSALSHLAIGANP  137 (193)
T ss_dssp             S-CCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred             C-CCCeeChhhhhcCccccEEEeCCCC
Confidence            3 2333443334445555555555443

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.44  E-value=7.5e-13  Score=111.98  Aligned_cols=125  Identities=21%  Similarity=0.247  Sum_probs=102.5

Q ss_pred             cEEEccCCCCCCCChhhhcccCCcEEEcccccCCC-cccccCcCCCCEEEeeCCCCcccch-hhcCCCCCCEEeccCCcC
Q 038338          176 KVLSLIGIHFSSLPSSLGRLINLQTLCLDWCQLED-VAAIGQLKKLEILNLADSNIEQLPL-EIGQLTGLRLLDLTNCWS  253 (421)
Q Consensus       176 ~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~-~~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~  253 (421)
                      ++++++++.++.+|..+.  .+|++|++++|.++. |..+.++++|++|++++|.++.++. .+..+++|++|++++| .
T Consensus        13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N-~   89 (193)
T 2wfh_A           13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN-R   89 (193)
T ss_dssp             TEEECTTSCCSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-C
T ss_pred             CEEEcCCCCCCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC-c
Confidence            678899998888887654  589999999999888 8889999999999999999997765 4888999999999996 4


Q ss_pred             CcccchhhhcCCCCCcEEEcccCCCCCccccCCCCcChhhhcCCCCCCEEEEEecCcc
Q 038338          254 LQVIAPNVISKLSRLEELYMDNSFSGWEKVEGGSNASLVELKRLTKLTTLEIEVRDAE  311 (421)
Q Consensus       254 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  311 (421)
                      +..++...+..+++|+.|++++|.+...+.        ..+..+++|+.|++++|.+.
T Consensus        90 l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~--------~~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A           90 LRCIPPRTFDGLKSLRLLSLHGNDISVVPE--------GAFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             CCBCCTTTTTTCTTCCEEECCSSCCCBCCT--------TTTTTCTTCCEEECCSSCEE
T ss_pred             cCEeCHHHhCCCCCCCEEECCCCCCCeeCh--------hhhhcCccccEEEeCCCCee
Confidence            556666558889999999999988876554        45777888888888888753

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.44  E-value=5.2e-13  Score=112.91  Aligned_cols=124  Identities=22%  Similarity=0.270  Sum_probs=85.8

Q ss_pred             eEEEcCCCCCccCCcccCCCCccEEEeeecCCCCcccCh-HHhccCCCccEEEccCCCCCCC-ChhhhcccCCcEEEccc
Q 038338          128 IAISLPQRNIQELPERLQCPNLQLFLLFRQGYGPVQISD-LFFEGTEELKVLSLIGIHFSSL-PSSLGRLINLQTLCLDW  205 (421)
Q Consensus       128 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~  205 (421)
                      +.++++++.+..+|.... ++++.|++++|.+  ..++. .+|..+++|++|++++|.++.+ |..+..+.+|++|++++
T Consensus        11 ~~l~~s~~~l~~ip~~~~-~~l~~L~l~~n~i--~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~   87 (192)
T 1w8a_A           11 TTVDCTGRGLKEIPRDIP-LHTTELLLNDNEL--GRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TEEECTTSCCSSCCSCCC-TTCSEEECCSCCC--CSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CEEEcCCCCcCcCccCCC-CCCCEEECCCCcC--CccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence            567777777777765432 3777777777765  33333 3356777777777777777764 56677777777777777


Q ss_pred             ccCCC--cccccCcCCCCEEEeeCCCCccc-chhhcCCCCCCEEeccCCcCC
Q 038338          206 CQLED--VAAIGQLKKLEILNLADSNIEQL-PLEIGQLTGLRLLDLTNCWSL  254 (421)
Q Consensus       206 ~~~~~--~~~~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~l~~~~~~  254 (421)
                      |.++.  +..+.++++|++|++++|+++.+ |..+..+++|++|++++|...
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  139 (192)
T 1w8a_A           88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence            77776  44577777777777777777754 555777777777777776443

>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*

Probab=99.37  E-value=5.3e-14  Score=138.63  Aligned_cols=96  Identities=17%  Similarity=0.110  Sum_probs=74.5

Q ss_pred             hhhhhHHHhhhhccCchHHHHHHH-----------HhccCCCCCccChHHHHHHHhhh--ccccccccHHHHHHHHHHHH
Q 038338            3 KNVYLSIKLSYDFLRSEEAKSMFR-----------LCGLYSEGHAIPVPYLLRYGVGW--GLFENVYTLEEARSRVHRLI   69 (421)
Q Consensus         3 ~~i~~~l~lSY~~L~~~~lk~cfl-----------~~~~fp~~~~~~~~~li~~wia~--g~~~~~~~~~~~~~~~~~~~   69 (421)
                      .++.+++++||++||+ ++|.||+           |||+||+|+.++    +..|+|+  ||++........++.+. ++
T Consensus       361 ~~i~~~l~~Sy~~L~~-~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~~~~~~-~l  434 (549)
T 2a5y_B          361 VGVECITPYSYKSLAM-ALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLDDEVAD-RL  434 (549)
T ss_dssp             STTCCCSSSSSSSHHH-HHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCCTHHHHH-HH
T ss_pred             HHHHHHHhcccccccH-HHHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCCCHHHHHH-HH
Confidence            4678899999999998 5999999           999999999998    8999999  99975321111233334 89


Q ss_pred             HHHHhcccccccC--CCCceeccchHHHHHHHHhhcC
Q 038338           70 DNLKSSCLLLDGD--AEDEVKMHDIIHVVAVSVAAET  104 (421)
Q Consensus        70 ~~L~~~~~~~~~~--~~~~~~~hd~~~~l~~~~~~~e  104 (421)
                      ++|+++++++..+  ....|+|||+++++|.+++..+
T Consensus       435 ~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~  471 (549)
T 2a5y_B          435 KRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQ  471 (549)
T ss_dssp             HHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTH
T ss_pred             HHHHHcCCeeEecCCCceEEEeChHHHHHHHHHHHHH
Confidence            9999999998653  3457999999999999988776

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.37  E-value=5.7e-12  Score=105.00  Aligned_cols=121  Identities=21%  Similarity=0.277  Sum_probs=62.4

Q ss_pred             eEEEcCCCCCccCCcccCCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCCChh-hhcccCCcEEEcccc
Q 038338          128 IAISLPQRNIQELPERLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPSS-LGRLINLQTLCLDWC  206 (421)
Q Consensus       128 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~-i~~l~~L~~L~l~~~  206 (421)
                      +.+++.++.+..+|.. -.++++.|++++|.+  ..++...+..+++|++|++++|.++.+|.. ++.+.+|++|++++|
T Consensus        10 ~~l~~~~~~l~~~p~~-~~~~l~~L~l~~n~l--~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N   86 (177)
T 2o6r_A           10 TEIRCNSKGLTSVPTG-IPSSATRLELESNKL--QSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN   86 (177)
T ss_dssp             TEEECCSSCCSSCCTT-CCTTCSEEECCSSCC--CCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEecCCCCccCCCC-CCCCCcEEEeCCCcc--cEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence            3455555555555432 224555666655553  334443345555555555555555554433 355555555555555


Q ss_pred             cCCC-c-ccccCcCCCCEEEeeCCCCcccchh-hcCCCCCCEEeccCC
Q 038338          207 QLED-V-AAIGQLKKLEILNLADSNIEQLPLE-IGQLTGLRLLDLTNC  251 (421)
Q Consensus       207 ~~~~-~-~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~  251 (421)
                      .++. + ..+.++++|++|++++|.++.+|.. +..+++|++|++++|
T Consensus        87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N  134 (177)
T 2o6r_A           87 KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN  134 (177)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred             CccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCC
Confidence            5555 2 2345555555555555555555444 244555555555554

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.36  E-value=6.2e-12  Score=104.79  Aligned_cols=124  Identities=22%  Similarity=0.354  Sum_probs=67.8

Q ss_pred             cEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCCChh-hhcccCCcEEEcccccCCC-c-ccccCcCCCCEEEee
Q 038338          150 QLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPSS-LGRLINLQTLCLDWCQLED-V-AAIGQLKKLEILNLA  226 (421)
Q Consensus       150 ~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~-i~~l~~L~~L~l~~~~~~~-~-~~~~~l~~L~~L~l~  226 (421)
                      +.++++++..  ..+|..+   .++|++|++++|.++.+|.. ++.+.+|++|++++|.++. + ..++++++|++|+++
T Consensus        10 ~~l~~~~~~l--~~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~   84 (177)
T 2o6r_A           10 TEIRCNSKGL--TSVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH   84 (177)
T ss_dssp             TEEECCSSCC--SSCCTTC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CEEEecCCCC--ccCCCCC---CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECC
Confidence            4555555543  3444332   35566666666666554432 4556666666666666555 3 334566666666666


Q ss_pred             CCCCcccchh-hcCCCCCCEEeccCCcCCcccchhhhcCCCCCcEEEcccCCCC
Q 038338          227 DSNIEQLPLE-IGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNSFSG  279 (421)
Q Consensus       227 ~~~l~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  279 (421)
                      +|+++.+|.. +..+++|++|++++| .+..++...+..+++|++|++++|.+.
T Consensus        85 ~N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~  137 (177)
T 2o6r_A           85 ENKLQSLPNGVFDKLTQLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNPWD  137 (177)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             CCCccccCHHHhhCCcccCEEECcCC-cceEeCHHHhcCCcccCEEEecCCCee
Confidence            6666655543 455666666666654 334444443455556666666555443

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.36  E-value=1.8e-14  Score=122.71  Aligned_cols=106  Identities=23%  Similarity=0.262  Sum_probs=53.2

Q ss_pred             ccCCCccEEEccCCCCCCCChhhhcccCCcEEEcccccCCC-cccccCcCCCCEEEeeCCCCcccchhhcCCCCCCEEec
Q 038338          170 EGTEELKVLSLIGIHFSSLPSSLGRLINLQTLCLDWCQLED-VAAIGQLKKLEILNLADSNIEQLPLEIGQLTGLRLLDL  248 (421)
Q Consensus       170 ~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~-~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l  248 (421)
                      ..+++|++|++++|.+..+| .+..+++|++|++++|.+.. |..+..+++|++|++++|++..+| .+..+++|++|++
T Consensus        45 ~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~~L~l  122 (198)
T 1ds9_A           45 STLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEKLVNLRVLYM  122 (198)
T ss_dssp             HHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHHHSSEEEE
T ss_pred             hcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-ccccCCCCCEEEC
Confidence            44555555555555555554 45555555555555555554 444444455555555555555544 3555555555555


Q ss_pred             cCCcCCcccch-hhhcCCCCCcEEEcccCCC
Q 038338          249 TNCWSLQVIAP-NVISKLSRLEELYMDNSFS  278 (421)
Q Consensus       249 ~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~  278 (421)
                      ++|. +..++. ..+..+++|++|++++|.+
T Consensus       123 ~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~l  152 (198)
T 1ds9_A          123 SNNK-ITNWGEIDKLAALDKLEDLLLAGNPL  152 (198)
T ss_dssp             SEEE-CCCHHHHHHHTTTTTCSEEEECSCHH
T ss_pred             CCCc-CCchhHHHHHhcCCCCCEEEecCCcc
Confidence            5532 222222 1244555555555555543

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.27  E-value=2e-13  Score=116.23  Aligned_cols=143  Identities=20%  Similarity=0.237  Sum_probs=111.3

Q ss_pred             CCeEEEcCCC--CCccCCccc-CCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCCChhhhcccCCcEEE
Q 038338          126 DPIAISLPQR--NIQELPERL-QCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPSSLGRLINLQTLC  202 (421)
Q Consensus       126 ~l~~l~l~~~--~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~  202 (421)
                      +++...+.+.  .+..++... .+++|+.|++++|.+  ..++ . +.++++|++|++++|.++.+|..+..+++|++|+
T Consensus        24 ~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l--~~l~-~-~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~   99 (198)
T 1ds9_A           24 EAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNI--EKIS-S-LSGMENLRILSLGRNLIKKIENLDAVADTLEELW   99 (198)
T ss_dssp             TCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEE--SCCC-C-HHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEE
T ss_pred             chheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCC--cccc-c-cccCCCCCEEECCCCCcccccchhhcCCcCCEEE
Confidence            3444455433  334444333 889999999999986  4466 3 5789999999999999999998888889999999


Q ss_pred             cccccCCCcccccCcCCCCEEEeeCCCCcccch--hhcCCCCCCEEeccCCcCCcccc---------hhhhcCCCCCcEE
Q 038338          203 LDWCQLEDVAAIGQLKKLEILNLADSNIEQLPL--EIGQLTGLRLLDLTNCWSLQVIA---------PNVISKLSRLEEL  271 (421)
Q Consensus       203 l~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~--~~~~l~~L~~L~l~~~~~~~~~~---------~~~l~~l~~L~~L  271 (421)
                      +++|.+...+.++.+++|++|++++|.+..++.  .+..+++|++|++++|......|         ...+..+++|+.|
T Consensus       100 L~~N~l~~l~~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~L  179 (198)
T 1ds9_A          100 ISYNQIASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKL  179 (198)
T ss_dssp             EEEEECCCHHHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEE
T ss_pred             CcCCcCCcCCccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEE
Confidence            999999884478899999999999999997765  68899999999999975433322         1236778888888


Q ss_pred             E
Q 038338          272 Y  272 (421)
Q Consensus       272 ~  272 (421)
                      +
T Consensus       180 d  180 (198)
T 1ds9_A          180 D  180 (198)
T ss_dssp             C
T ss_pred             C
Confidence            7

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.24  E-value=4.6e-11  Score=99.06  Aligned_cols=101  Identities=23%  Similarity=0.369  Sum_probs=56.4

Q ss_pred             cEEEccCCCCCCCChhhhcccCCcEEEcccccCCC--cccccCcCCCCEEEeeCCCCcccchh-hcCCCCCCEEeccCCc
Q 038338          176 KVLSLIGIHFSSLPSSLGRLINLQTLCLDWCQLED--VAAIGQLKKLEILNLADSNIEQLPLE-IGQLTGLRLLDLTNCW  252 (421)
Q Consensus       176 ~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~  252 (421)
                      +.++++++.++.+|..+.  .+|++|++++|.+..  |..++++++|++|++++|+++.+|.. +..+++|++|++++| 
T Consensus        15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N-   91 (174)
T 2r9u_A           15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN-   91 (174)
T ss_dssp             SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-
T ss_pred             cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC-
Confidence            455566665555555443  556666666666555  34555666666666666666655554 355666666666553 


Q ss_pred             CCcccchhhhcCCCCCcEEEcccCCCC
Q 038338          253 SLQVIAPNVISKLSRLEELYMDNSFSG  279 (421)
Q Consensus       253 ~~~~~~~~~l~~l~~L~~L~l~~~~~~  279 (421)
                      .+..++...+..+++|+.|++++|.+.
T Consensus        92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~  118 (174)
T 2r9u_A           92 HLKSIPRGAFDNLKSLTHIYLYNNPWD  118 (174)
T ss_dssp             CCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred             ccceeCHHHhccccCCCEEEeCCCCcc
Confidence            334444443555556666666555444

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.23  E-value=5.2e-11  Score=98.37  Aligned_cols=103  Identities=22%  Similarity=0.312  Sum_probs=63.6

Q ss_pred             ccEEEccCCCCCCCChhhhcccCCcEEEcccccCCC--cccccCcCCCCEEEeeCCCCcccchh-hcCCCCCCEEeccCC
Q 038338          175 LKVLSLIGIHFSSLPSSLGRLINLQTLCLDWCQLED--VAAIGQLKKLEILNLADSNIEQLPLE-IGQLTGLRLLDLTNC  251 (421)
Q Consensus       175 L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~  251 (421)
                      .++++++++.++.+|..+.  .+|++|++++|.++.  +..+.++++|++|++++|+++.+|.. +..+++|++|++++|
T Consensus        11 ~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N   88 (170)
T 3g39_A           11 GTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN   88 (170)
T ss_dssp             TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence            3566666666666665442  566666666666665  45566666666666666666666554 356666666666664


Q ss_pred             cCCcccchhhhcCCCCCcEEEcccCCCCC
Q 038338          252 WSLQVIAPNVISKLSRLEELYMDNSFSGW  280 (421)
Q Consensus       252 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  280 (421)
                       .+..++...+..+++|++|++++|.+..
T Consensus        89 -~l~~~~~~~~~~l~~L~~L~L~~N~~~c  116 (170)
T 3g39_A           89 -QLKSIPRGAFDNLKSLTHIWLLNNPWDC  116 (170)
T ss_dssp             -CCCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred             -ccCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence             3445555445666666666666665443

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.20  E-value=2.9e-11  Score=111.34  Aligned_cols=100  Identities=16%  Similarity=0.132  Sum_probs=67.0

Q ss_pred             CCCCCEEeccCCcCCcccchhhhcCCCCCcEEEcccCCCCCccccCCCCcChhhhcCCCCCC-EEEEEecCccccCCcc-
Q 038338          240 LTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNSFSGWEKVEGGSNASLVELKRLTKLT-TLEIEVRDAEILLPDF-  317 (421)
Q Consensus       240 l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~-~L~l~~~~~~~~~~~~-  317 (421)
                      +++|+.+++++| .+..++...|..+++|+++++..| +.....        ..+.++++|+ .+.+.. .+..++... 
T Consensus       225 ~~~L~~l~L~~n-~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~--------~aF~~~~~L~~~l~l~~-~l~~I~~~aF  293 (329)
T 3sb4_A          225 MPNLVSLDISKT-NATTIPDFTFAQKKYLLKIKLPHN-LKTIGQ--------RVFSNCGRLAGTLELPA-SVTAIEFGAF  293 (329)
T ss_dssp             CTTCCEEECTTB-CCCEECTTTTTTCTTCCEEECCTT-CCEECT--------TTTTTCTTCCEEEEECT-TCCEECTTTT
T ss_pred             cCCCeEEECCCC-CcceecHhhhhCCCCCCEEECCcc-cceehH--------HHhhCChhccEEEEEcc-cceEEchhhh
Confidence            678888888774 466777766778888888888776 444333        5577778888 888766 566665443 


Q ss_pred             -cccCCceEEEEEcCCccchhhhhhchhhhceeEE
Q 038338          318 -VSVELQRYRIRIGDKLEYEIDQLLVKSEALRLMM  351 (421)
Q Consensus       318 -~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~  351 (421)
                       .+++|+.+++. .+......+..+.+|++|+.+.
T Consensus       294 ~~c~~L~~l~l~-~n~i~~I~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          294 MGCDNLRYVLAT-GDKITTLGDELFGNGVPSKLIY  327 (329)
T ss_dssp             TTCTTEEEEEEC-SSCCCEECTTTTCTTCCCCEEE
T ss_pred             hCCccCCEEEeC-CCccCccchhhhcCCcchhhhc
Confidence             45778888774 2333333345677788888775

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.17  E-value=1.2e-10  Score=96.58  Aligned_cols=101  Identities=17%  Similarity=0.259  Sum_probs=44.8

Q ss_pred             eEEEcCCCCCccCCcccCCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCCChh-hhcccCCcEEEcccc
Q 038338          128 IAISLPQRNIQELPERLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPSS-LGRLINLQTLCLDWC  206 (421)
Q Consensus       128 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~-i~~l~~L~~L~l~~~  206 (421)
                      +.++++++.+..+|.... ++|+.|++++|.+  ..++...|.++++|++|++++|.++.+|.. +..+++|++|++++|
T Consensus        15 ~~l~~~~n~l~~iP~~~~-~~L~~L~Ls~N~l--~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N   91 (174)
T 2r9u_A           15 TLVNCQNIRLASVPAGIP-TDKQRLWLNNNQI--TKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN   91 (174)
T ss_dssp             SEEECCSSCCSSCCSCCC-TTCSEEECCSSCC--CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             cEEEeCCCCCCccCCCcC-CCCcEEEeCCCCc--cccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence            345555555544443222 4444555554443  222222234444444444444444444433 244444444444444


Q ss_pred             cCCC-cc-cccCcCCCCEEEeeCCCCc
Q 038338          207 QLED-VA-AIGQLKKLEILNLADSNIE  231 (421)
Q Consensus       207 ~~~~-~~-~~~~l~~L~~L~l~~~~l~  231 (421)
                      .+.. |. .+..+++|++|++++|.+.
T Consensus        92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~  118 (174)
T 2r9u_A           92 HLKSIPRGAFDNLKSLTHIYLYNNPWD  118 (174)
T ss_dssp             CCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred             ccceeCHHHhccccCCCEEEeCCCCcc
Confidence            4444 22 2444444444444444444

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.16  E-value=1.2e-10  Score=107.18  Aligned_cols=199  Identities=10%  Similarity=0.068  Sum_probs=119.8

Q ss_pred             cChHHhcc--------CCCccEEEccCCCCCCCCh-hhhcccCCcEEEcccccCCC--cccccCcCCCCEEEeeCCC---
Q 038338          164 ISDLFFEG--------TEELKVLSLIGIHFSSLPS-SLGRLINLQTLCLDWCQLED--VAAIGQLKKLEILNLADSN---  229 (421)
Q Consensus       164 ~~~~~~~~--------l~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~---  229 (421)
                      ++...|.+        +++|+.|+++. .++.++. .+..+.+|+.+++..+.+..  +..+..+.++..+......   
T Consensus        84 I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~  162 (329)
T 3sb4_A           84 VPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYR  162 (329)
T ss_dssp             ECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHH
T ss_pred             cCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhh
Confidence            44455566        77777777776 5665543 36667777777777766555  4555555555554443311   


Q ss_pred             -Ccccc-hhhcCCCCC--------------------------CEEeccCCcCCcccchhhh-cCCCCCcEEEcccCCCCC
Q 038338          230 -IEQLP-LEIGQLTGL--------------------------RLLDLTNCWSLQVIAPNVI-SKLSRLEELYMDNSFSGW  280 (421)
Q Consensus       230 -l~~lp-~~~~~l~~L--------------------------~~L~l~~~~~~~~~~~~~l-~~l~~L~~L~l~~~~~~~  280 (421)
                       ...+. ..+..+.+|                          ..+.+.+.  +.......+ ..+++|+.+++.+|.+..
T Consensus       163 ~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~--l~~~~~~~l~~~~~~L~~l~L~~n~i~~  240 (329)
T 3sb4_A          163 FKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGK--LDNADFKLIRDYMPNLVSLDISKTNATT  240 (329)
T ss_dssp             TSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEEC--CCHHHHHHHHHHCTTCCEEECTTBCCCE
T ss_pred             ccccccccccccccccceeEEecCCCcHHHHHhhcccCccccceEEEeee--ecHHHHHHHHHhcCCCeEEECCCCCcce
Confidence             01110 012222233                          33333221  001000011 138899999999988877


Q ss_pred             ccccCCCCcChhhhcCCCCCCEEEEEecCccccCCcc--cccCCc-eEEEEEcCCccchhhhhhchhhhceeEEEcCCcc
Q 038338          281 EKVEGGSNASLVELKRLTKLTTLEIEVRDAEILLPDF--VSVELQ-RYRIRIGDKLEYEIDQLLVKSEALRLMMLKGLEK  357 (421)
Q Consensus       281 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~-~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~  357 (421)
                      .+.        ..+.++.+|+.+.+..+ +..++...  .+++|+ .+.+.  +......+..+.+|++|+.+++.+|.+
T Consensus       241 I~~--------~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~--~~l~~I~~~aF~~c~~L~~l~l~~n~i  309 (329)
T 3sb4_A          241 IPD--------FTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELP--ASVTAIEFGAFMGCDNLRYVLATGDKI  309 (329)
T ss_dssp             ECT--------TTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEEC--TTCCEECTTTTTTCTTEEEEEECSSCC
T ss_pred             ecH--------hhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEc--ccceEEchhhhhCCccCCEEEeCCCcc
Confidence            765        67899999999999886 77777654  558899 99985  344444457789999999999988663


Q ss_pred             cccccchhHHHHhhhcccEEEe
Q 038338          358 VSILQENDGTKMLLQRTEDLWL  379 (421)
Q Consensus       358 ~~~~~~~~~~~~~~~~L~~L~l  379 (421)
                      ...  ....+.++ ++|+.++.
T Consensus       310 ~~I--~~~aF~~~-~~L~~ly~  328 (329)
T 3sb4_A          310 TTL--GDELFGNG-VPSKLIYK  328 (329)
T ss_dssp             CEE--CTTTTCTT-CCCCEEEC
T ss_pred             Ccc--chhhhcCC-cchhhhcc
Confidence            221  23345665 88888763

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.11  E-value=4.4e-10  Score=92.73  Aligned_cols=101  Identities=20%  Similarity=0.334  Sum_probs=45.1

Q ss_pred             eEEEcCCCCCccCCcccCCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCCChh-hhcccCCcEEEcccc
Q 038338          128 IAISLPQRNIQELPERLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPSS-LGRLINLQTLCLDWC  206 (421)
Q Consensus       128 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~-i~~l~~L~~L~l~~~  206 (421)
                      +.++++++.+..+|... .++++.|++++|.+  ..++...|.++++|++|++++|.++.+|.. +..+++|++|++++|
T Consensus        12 ~~l~~s~n~l~~ip~~~-~~~l~~L~L~~N~i--~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N   88 (170)
T 3g39_A           12 TTVDCSGKSLASVPTGI-PTTTQVLYLYDNQI--TKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN   88 (170)
T ss_dssp             TEEECTTSCCSSCCSCC-CTTCSEEECCSSCC--CCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEeCCCCcCccCccC-CCCCcEEEcCCCcC--CccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence            34555555555454332 24445555555443  223222234444455555554444444332 244444444444444


Q ss_pred             cCCC-c-ccccCcCCCCEEEeeCCCCc
Q 038338          207 QLED-V-AAIGQLKKLEILNLADSNIE  231 (421)
Q Consensus       207 ~~~~-~-~~~~~l~~L~~L~l~~~~l~  231 (421)
                      .++. + ..+.++++|++|++++|.+.
T Consensus        89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~  115 (170)
T 3g39_A           89 QLKSIPRGAFDNLKSLTHIWLLNNPWD  115 (170)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             ccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence            4444 2 22444444444444444433

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.10  E-value=1.1e-09  Score=103.19  Aligned_cols=253  Identities=13%  Similarity=0.136  Sum_probs=154.1

Q ss_pred             CCCeEEEcCCCCCccCCccc--CCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCCC-hhhhcccCCcEE
Q 038338          125 KDPIAISLPQRNIQELPERL--QCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLP-SSLGRLINLQTL  201 (421)
Q Consensus       125 ~~l~~l~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp-~~i~~l~~L~~L  201 (421)
                      ..++.+.+.++ +..++...  + .+|+.+.+..+   ...+....|.+ .+|+.+.+.. .++.++ ..+..+.+|+.+
T Consensus       113 ~~l~~i~ip~~-i~~I~~~aF~~-~~L~~i~l~~~---i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l  185 (401)
T 4fdw_A          113 KGYNEIILPNS-VKSIPKDAFRN-SQIAKVVLNEG---LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKA  185 (401)
T ss_dssp             SSCSEEECCTT-CCEECTTTTTT-CCCSEEECCTT---CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEE
T ss_pred             CCccEEEECCc-cCEehHhhccc-CCccEEEeCCC---ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCee
Confidence            55666666543 33343222  3 36788877655   35566655666 3688888875 455543 457778888888


Q ss_pred             EcccccCCC-cccccCcCCCCEEEeeCCCCcccchh-hcCCCCCCEEeccCCcCCcccchhhhcCCCCCcEEEcccCCCC
Q 038338          202 CLDWCQLED-VAAIGQLKKLEILNLADSNIEQLPLE-IGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNSFSG  279 (421)
Q Consensus       202 ~l~~~~~~~-~~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  279 (421)
                      ++..+.++. +...-...+|+.+.+.. .+..++.. +.++++|+.+.+..+  +..++...+.. .+|+.+.+..+ +.
T Consensus       186 ~l~~n~l~~I~~~aF~~~~L~~l~lp~-~l~~I~~~aF~~~~~L~~l~l~~~--l~~I~~~aF~~-~~L~~i~lp~~-i~  260 (401)
T 4fdw_A          186 DLSKTKITKLPASTFVYAGIEEVLLPV-TLKEIGSQAFLKTSQLKTIEIPEN--VSTIGQEAFRE-SGITTVKLPNG-VT  260 (401)
T ss_dssp             ECTTSCCSEECTTTTTTCCCSEEECCT-TCCEECTTTTTTCTTCCCEECCTT--CCEECTTTTTT-CCCSEEEEETT-CC
T ss_pred             ecCCCcceEechhhEeecccCEEEeCC-chheehhhHhhCCCCCCEEecCCC--ccCcccccccc-CCccEEEeCCC-cc
Confidence            888877776 43333357888888874 36666543 667888888888763  45666655655 67888887433 33


Q ss_pred             CccccCCCCcChhhhcCCCCCCEEEEEecCcc-----ccCCcc--cccCCceEEEEEcCCccchhhhhhchhhhceeEEE
Q 038338          280 WEKVEGGSNASLVELKRLTKLTTLEIEVRDAE-----ILLPDF--VSVELQRYRIRIGDKLEYEIDQLLVKSEALRLMML  352 (421)
Q Consensus       280 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-----~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l  352 (421)
                      ....        ..+.++++|+.+.+..+...     .++...  .+++|+.+.+.  +.........+.+|++|+.+.+
T Consensus       261 ~I~~--------~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~--~~i~~I~~~aF~~c~~L~~l~l  330 (401)
T 4fdw_A          261 NIAS--------RAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP--ESIRILGQGLLGGNRKVTQLTI  330 (401)
T ss_dssp             EECT--------TTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC--TTCCEECTTTTTTCCSCCEEEE
T ss_pred             EECh--------hHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC--CceEEEhhhhhcCCCCccEEEE
Confidence            3322        55777888888888776543     344332  45778877774  3333333455777888888888


Q ss_pred             cCCcccccccc-hhHHHHhhhcccEEEeccccCcccccccccccCCCC-CccEEEEee
Q 038338          353 KGLEKVSILQE-NDGTKMLLQRTEDLWLVKLEGVQNVVHELDDGEGFP-RLKHLHVES  408 (421)
Q Consensus       353 ~~~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~-~L~~L~i~~  408 (421)
                      ..+-    ..+ ...+.++  +|+.+.+.++.........+.   +++ +++.|++-.
T Consensus       331 p~~l----~~I~~~aF~~~--~L~~l~l~~n~~~~l~~~~F~---~~~~~l~~l~vp~  379 (401)
T 4fdw_A          331 PANV----TQINFSAFNNT--GIKEVKVEGTTPPQVFEKVWY---GFPDDITVIRVPA  379 (401)
T ss_dssp             CTTC----CEECTTSSSSS--CCCEEEECCSSCCBCCCSSCC---CSCTTCCEEEECG
T ss_pred             Cccc----cEEcHHhCCCC--CCCEEEEcCCCCccccccccc---CCCCCccEEEeCH
Confidence            6632    122 2234443  788888877654333333333   553 667777654

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.09  E-value=4e-09  Score=99.37  Aligned_cols=234  Identities=13%  Similarity=0.069  Sum_probs=168.4

Q ss_pred             CCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCCCh-hhhcccCCcEEEcccccCCC--cccccCcCCCC
Q 038338          145 QCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPS-SLGRLINLQTLCLDWCQLED--VAAIGQLKKLE  221 (421)
Q Consensus       145 ~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~--~~~~~~l~~L~  221 (421)
                      .+..++.+.+...   ...++...|.++ +|+.+.+..+ ++.++. .+.. .+|+.+.+.. .++.  ...+.++.+|+
T Consensus       111 ~~~~l~~i~ip~~---i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~  183 (401)
T 4fdw_A          111 ILKGYNEIILPNS---VKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLK  183 (401)
T ss_dssp             ECSSCSEEECCTT---CCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCC
T ss_pred             ecCCccEEEECCc---cCEehHhhcccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCC
Confidence            3466667776654   456666667775 7999999876 665544 3555 4799999986 5555  67899999999


Q ss_pred             EEEeeCCCCcccchhhcCCCCCCEEeccCCcCCcccchhhhcCCCCCcEEEcccCCCCCccccCCCCcChhhhcCCCCCC
Q 038338          222 ILNLADSNIEQLPLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNSFSGWEKVEGGSNASLVELKRLTKLT  301 (421)
Q Consensus       222 ~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~  301 (421)
                      .+++.++++..++.......+|+.+.+..+  +..++...+..+++|+.+.+..+ +.....        ..+.+ .+|+
T Consensus       184 ~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~--l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~--------~aF~~-~~L~  251 (401)
T 4fdw_A          184 KADLSKTKITKLPASTFVYAGIEEVLLPVT--LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQ--------EAFRE-SGIT  251 (401)
T ss_dssp             EEECTTSCCSEECTTTTTTCCCSEEECCTT--CCEECTTTTTTCTTCCCEECCTT-CCEECT--------TTTTT-CCCS
T ss_pred             eeecCCCcceEechhhEeecccCEEEeCCc--hheehhhHhhCCCCCCEEecCCC-ccCccc--------ccccc-CCcc
Confidence            999999999999887666899999999863  67788777899999999999865 332222        33444 6899


Q ss_pred             EEEEEecCccccCCcc--cccCCceEEEEEcCCc----cchhhhhhchhhhceeEEEcCCcccccccc-hhHHHHhhhcc
Q 038338          302 TLEIEVRDAEILLPDF--VSVELQRYRIRIGDKL----EYEIDQLLVKSEALRLMMLKGLEKVSILQE-NDGTKMLLQRT  374 (421)
Q Consensus       302 ~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~~----~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~~~~~L  374 (421)
                      .+.+ .+.+..++...  .+++|+.+.+......    .......+.+|++|+.+.+..+-    ..+ ...+.++ ++|
T Consensus       252 ~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~i----~~I~~~aF~~c-~~L  325 (401)
T 4fdw_A          252 TVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPESI----RILGQGLLGGN-RKV  325 (401)
T ss_dssp             EEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTTC----CEECTTTTTTC-CSC
T ss_pred             EEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCce----EEEhhhhhcCC-CCc
Confidence            9999 55666665553  5699999999633221    11234668899999999998632    222 2345555 899


Q ss_pred             cEEEeccccCccccc-ccccccCCCCCccEEEEeec
Q 038338          375 EDLWLVKLEGVQNVV-HELDDGEGFPRLKHLHVESC  409 (421)
Q Consensus       375 ~~L~l~~~~~~~~~~-~~~~~~~~~~~L~~L~i~~c  409 (421)
                      +.+.+..+  +..+. ..+.   ++ +|+.+.+.++
T Consensus       326 ~~l~lp~~--l~~I~~~aF~---~~-~L~~l~l~~n  355 (401)
T 4fdw_A          326 TQLTIPAN--VTQINFSAFN---NT-GIKEVKVEGT  355 (401)
T ss_dssp             CEEEECTT--CCEECTTSSS---SS-CCCEEEECCS
T ss_pred             cEEEECcc--ccEEcHHhCC---CC-CCCEEEEcCC
Confidence            99999654  45554 3343   77 9999999876

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*

Probab=99.02  E-value=3.1e-10  Score=115.49  Aligned_cols=84  Identities=17%  Similarity=0.202  Sum_probs=72.6

Q ss_pred             hhhhhHHHhhhhccCchHH-HHHHHHhccCCCCCccChHHHHHHHhhhccccccccHHHHHHHHHHHHHHHHhccccccc
Q 038338            3 KNVYLSIKLSYDFLRSEEA-KSMFRLCGLYSEGHAIPVPYLLRYGVGWGLFENVYTLEEARSRVHRLIDNLKSSCLLLDG   81 (421)
Q Consensus         3 ~~i~~~l~lSY~~L~~~~l-k~cfl~~~~fp~~~~~~~~~li~~wia~g~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~   81 (421)
                      ..+..+|.+||+.||++ + |.||+|||+||+++.|+++.++..|+++|  .     +    .+.+++++|+++++++..
T Consensus       353 ~~I~aaLelSYd~Lp~e-elK~cFL~LAIFPed~~I~~elLa~LW~aeG--e-----e----dAe~~L~eLvdRSLLq~d  420 (1221)
T 1vt4_I          353 DKLTTIIESSLNVLEPA-EYRKMFDRLSVFPPSAHIPTILLSLIWFDVI--K-----S----DVMVVVNKLHKYSLVEKQ  420 (1221)
T ss_dssp             HHHHHHHHHHHHHSCTT-HHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC--S-----H----HHHHHHHHHHTSSSSSBC
T ss_pred             hHHHHHHHHHHHhCCHH-HHHHHHHHHhCCCCCCCCCHHHHHHHhcCCC--H-----H----HHHHHHHHHHhhCCEEEe
Confidence            56889999999999985 8 99999999999999999999999999987  1     1    244589999999999886


Q ss_pred             CCCCceeccchHHHHHH
Q 038338           82 DAEDEVKMHDIIHVVAV   98 (421)
Q Consensus        82 ~~~~~~~~hd~~~~l~~   98 (421)
                      +....|+|||++++++.
T Consensus       421 ~~~~rYrMHDLllELr~  437 (1221)
T 1vt4_I          421 PKESTISIPSIYLELKV  437 (1221)
T ss_dssp             SSSSEEBCCCHHHHHHH
T ss_pred             CCCCEEEehHHHHHHhc
Confidence            55667999999998663

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.02  E-value=7.7e-11  Score=110.01  Aligned_cols=127  Identities=13%  Similarity=0.035  Sum_probs=54.8

Q ss_pred             cCCCeEEEcCCCCCccCC-----ccc--CCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCC-----Chh
Q 038338          124 RKDPIAISLPQRNIQELP-----ERL--QCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSL-----PSS  191 (421)
Q Consensus       124 ~~~l~~l~l~~~~~~~l~-----~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-----p~~  191 (421)
                      .+.++.+++++|.+....     ...  ..++|+.|++++|.+ ...-...+...+++|++|++++|.++..     ...
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l-~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~  149 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQL-DPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDL  149 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCC-CHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHH
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCC-CHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHH
Confidence            345667777766653211     111  224555555555544 2221222223334555555555554321     111


Q ss_pred             h-hcccCCcEEEcccccCCC------cccccCcCCCCEEEeeCCCCc-----ccchhhcCCCCCCEEeccCC
Q 038338          192 L-GRLINLQTLCLDWCQLED------VAAIGQLKKLEILNLADSNIE-----QLPLEIGQLTGLRLLDLTNC  251 (421)
Q Consensus       192 i-~~l~~L~~L~l~~~~~~~------~~~~~~l~~L~~L~l~~~~l~-----~lp~~~~~l~~L~~L~l~~~  251 (421)
                      + ....+|++|++++|.+++      +..+...++|++|++++|.+.     .++..+...++|++|++++|
T Consensus       150 L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N  221 (372)
T 3un9_A          150 LLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYN  221 (372)
T ss_dssp             HHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSS
T ss_pred             HHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCC
Confidence            1 123445555555555433      122234445555555555444     12233344444555555544

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.94  E-value=1.8e-10  Score=107.53  Aligned_cols=161  Identities=14%  Similarity=0.109  Sum_probs=116.5

Q ss_pred             CCCccEEEeeecCCCCcccCh----HHhccCCCccEEEccCCCCCC--CChhhhcccCCcEEEcccccCCC--cccc---
Q 038338          146 CPNLQLFLLFRQGYGPVQISD----LFFEGTEELKVLSLIGIHFSS--LPSSLGRLINLQTLCLDWCQLED--VAAI---  214 (421)
Q Consensus       146 ~~~L~~L~l~~~~~~~~~~~~----~~~~~l~~L~~L~l~~~~~~~--lp~~i~~l~~L~~L~l~~~~~~~--~~~~---  214 (421)
                      .+.++.|++++|.+ ......    .+....++|++|++++|.++.  ...-...+.+|++|++++|.+.+  ...+   
T Consensus        71 ~~~L~~L~Ls~n~l-~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~  149 (372)
T 3un9_A           71 LSSLRQLNLAGVRM-TPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDL  149 (372)
T ss_dssp             HTTCCEEECTTSCC-CHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHH
T ss_pred             HhhCCEEEecCCCC-CHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHH
Confidence            46799999999986 222111    111123799999999998864  22333456789999999999876  3444   


Q ss_pred             --cCcCCCCEEEeeCCCCc-----ccchhhcCCCCCCEEeccCCcCCcccc----hhhhcCCCCCcEEEcccCCCCCccc
Q 038338          215 --GQLKKLEILNLADSNIE-----QLPLEIGQLTGLRLLDLTNCWSLQVIA----PNVISKLSRLEELYMDNSFSGWEKV  283 (421)
Q Consensus       215 --~~l~~L~~L~l~~~~l~-----~lp~~~~~l~~L~~L~l~~~~~~~~~~----~~~l~~l~~L~~L~l~~~~~~~~~~  283 (421)
                        ...++|++|++++|.++     .++..+..+++|++|++++|.. +...    ...+...++|++|++++|.++....
T Consensus       150 L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l-~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~  228 (372)
T 3un9_A          150 LLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGL-GDEGLELLAAQLDRNRQLQELNVAYNGAGDTAA  228 (372)
T ss_dssp             HHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSC-HHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHH
T ss_pred             HHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCC-CcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHH
Confidence              35688999999999987     3556678899999999999753 3321    1236778899999999998875432


Q ss_pred             cCCCCcChhhhcCCCCCCEEEEEecCccc
Q 038338          284 EGGSNASLVELKRLTKLTTLEIEVRDAEI  312 (421)
Q Consensus       284 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  312 (421)
                          ..+...+...++|++|++++|.++.
T Consensus       229 ----~~l~~~L~~~~~L~~L~Ls~N~i~~  253 (372)
T 3un9_A          229 ----LALARAAREHPSLELLHLYFNELSS  253 (372)
T ss_dssp             ----HHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred             ----HHHHHHHHhCCCCCEEeccCCCCCH
Confidence                2334567778999999999999753

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.89  E-value=5.9e-09  Score=96.57  Aligned_cols=99  Identities=23%  Similarity=0.164  Sum_probs=72.5

Q ss_pred             EEEeeec-CCCCcccChHHhccCCCccEEEccC-CCCCCCC-hhhhcccCCcEEEcccccCCC--cccccCcCCCCEEEe
Q 038338          151 LFLLFRQ-GYGPVQISDLFFEGTEELKVLSLIG-IHFSSLP-SSLGRLINLQTLCLDWCQLED--VAAIGQLKKLEILNL  225 (421)
Q Consensus       151 ~L~l~~~-~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~lp-~~i~~l~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l  225 (421)
                      .++.+++ .+  ..+|.  +..+++|++|+|++ |.++.+| ..++.+.+|++|++++|.++.  |..|+++++|++|+|
T Consensus        12 ~v~~~~~n~l--~~ip~--l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l   87 (347)
T 2ifg_A           12 GLRCTRDGAL--DSLHH--LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNL   87 (347)
T ss_dssp             CEECCSSCCC--TTTTT--SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEEC
T ss_pred             EEEcCCCCCC--CccCC--CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeC
Confidence            4566665 43  55776  47778888888885 8887765 457788888888888888877  456788888888888


Q ss_pred             eCCCCcccchhhcCCCCCCEEeccCCcC
Q 038338          226 ADSNIEQLPLEIGQLTGLRLLDLTNCWS  253 (421)
Q Consensus       226 ~~~~l~~lp~~~~~l~~L~~L~l~~~~~  253 (421)
                      ++|++..+|..+....+|++|++.+|..
T Consensus        88 ~~N~l~~~~~~~~~~~~L~~l~l~~N~~  115 (347)
T 2ifg_A           88 SFNALESLSWKTVQGLSLQELVLSGNPL  115 (347)
T ss_dssp             CSSCCSCCCSTTTCSCCCCEEECCSSCC
T ss_pred             CCCccceeCHHHcccCCceEEEeeCCCc
Confidence            8888888877655444488888887643

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=98.84  E-value=3.2e-09  Score=115.01  Aligned_cols=89  Identities=12%  Similarity=0.126  Sum_probs=75.1

Q ss_pred             hhhhhHHHhhhhccCchHHHHHHHHhccCCCCCccChHHHHHHHhhhccccccccHHHHHHHHHHHHHHHHhcccccccC
Q 038338            3 KNVYLSIKLSYDFLRSEEAKSMFRLCGLYSEGHAIPVPYLLRYGVGWGLFENVYTLEEARSRVHRLIDNLKSSCLLLDGD   82 (421)
Q Consensus         3 ~~i~~~l~lSY~~L~~~~lk~cfl~~~~fp~~~~~~~~~li~~wia~g~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~   82 (421)
                      +.+..++.+||+.||+ ++|.||+|||+||+++.|+++.++..|.+++            +.+.+++++|+++++++...
T Consensus       362 ~~~~~~l~~s~~~L~~-~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~~------------~~~~~~l~~L~~~sl~~~~~  428 (1249)
T 3sfz_A          362 EALDEAMSISVEMLRE-DIKDYYTDLSILQKDVKVPTKVLCVLWDLET------------EEVEDILQEFVNKSLLFCNR  428 (1249)
T ss_dssp             HHHHHHHHHHHHTSCT-TTHHHHHHGGGSCTTCCEEHHHHHHHHTCCH------------HHHHHHHHHHHHTTSCEEEE
T ss_pred             HHHHHHHHHHHHhCCH-HHHHHHHHhCccCCCCeeCHHHHHHHhCCCH------------HHHHHHHHHHHhccceEEec
Confidence            3588999999999998 5999999999999999999999999997652            33455789999999997653


Q ss_pred             C--CCceeccchHHHHHHHHhhcC
Q 038338           83 A--EDEVKMHDIIHVVAVSVAAET  104 (421)
Q Consensus        83 ~--~~~~~~hd~~~~l~~~~~~~e  104 (421)
                      .  ...|+||+++++++...+..+
T Consensus       429 ~~~~~~~~~h~l~~~~~~~~~~~~  452 (1249)
T 3sfz_A          429 NGKSFCYYLHDLQVDFLTEKNRSQ  452 (1249)
T ss_dssp             SSSSEEEECCHHHHHHHHHHTGGG
T ss_pred             CCCceEEEecHHHHHHHHhhhhHH
Confidence            2  335999999999999887654

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.77  E-value=1.7e-08  Score=93.35  Aligned_cols=102  Identities=17%  Similarity=0.136  Sum_probs=83.2

Q ss_pred             EEEcCCC-CCccCCcccCCCCccEEEeee-cCCCCcccChHHhccCCCccEEEccCCCCCCCC-hhhhcccCCcEEEccc
Q 038338          129 AISLPQR-NIQELPERLQCPNLQLFLLFR-QGYGPVQISDLFFEGTEELKVLSLIGIHFSSLP-SSLGRLINLQTLCLDW  205 (421)
Q Consensus       129 ~l~l~~~-~~~~l~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp-~~i~~l~~L~~L~l~~  205 (421)
                      .++.+++ .+..+|.+..+++|+.|++++ |.+  ..++...|.++++|++|+|++|.++.++ ..+..+.+|++|++++
T Consensus        12 ~v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l--~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~   89 (347)
T 2ifg_A           12 GLRCTRDGALDSLHHLPGAENLTELYIENQQHL--QHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF   89 (347)
T ss_dssp             CEECCSSCCCTTTTTSCSCSCCSEEECCSCSSC--CEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred             EEEcCCCCCCCccCCCCCCCCeeEEEccCCCCC--CCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence            4677777 788888844888999999996 875  6677666789999999999999998865 4679999999999999


Q ss_pred             ccCCC-cccccCcCCCCEEEeeCCCCcc
Q 038338          206 CQLED-VAAIGQLKKLEILNLADSNIEQ  232 (421)
Q Consensus       206 ~~~~~-~~~~~~l~~L~~L~l~~~~l~~  232 (421)
                      |.+.. |..+.....|+.|++.+|.+..
T Consensus        90 N~l~~~~~~~~~~~~L~~l~l~~N~~~c  117 (347)
T 2ifg_A           90 NALESLSWKTVQGLSLQELVLSGNPLHC  117 (347)
T ss_dssp             SCCSCCCSTTTCSCCCCEEECCSSCCCC
T ss_pred             CccceeCHHHcccCCceEEEeeCCCccC
Confidence            99988 6544443349999999998873

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.65  E-value=2.7e-08  Score=92.07  Aligned_cols=23  Identities=17%  Similarity=0.169  Sum_probs=13.3

Q ss_pred             ccHHHHHHHHHHHHHHHHhcccc
Q 038338           56 YTLEEARSRVHRLIDNLKSSCLL   78 (421)
Q Consensus        56 ~~~~~~~~~~~~~~~~L~~~~~~   78 (421)
                      .+.++|...+.+++.+=..+|..
T Consensus        44 ~~~~~a~~~~~~l~~~k~~kGy~   66 (362)
T 2ra8_A           44 SSAGEAEKAAGKLIAEKTKKGYV   66 (362)
T ss_dssp             SSHHHHHHHHHHHHHHHHHTTCE
T ss_pred             CCHHHHHHHHHHHHHHHHhcCCc
Confidence            35566776666666654445543

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.55  E-value=9.5e-07  Score=83.13  Aligned_cols=78  Identities=10%  Similarity=0.110  Sum_probs=45.4

Q ss_pred             cccCCceEEEEEcCCccchhhhhhchhhhceeEEEcCCcccccccc-hhHHHHhhhcccEEEeccccCccccc-cccccc
Q 038338          318 VSVELQRYRIRIGDKLEYEIDQLLVKSEALRLMMLKGLEKVSILQE-NDGTKMLLQRTEDLWLVKLEGVQNVV-HELDDG  395 (421)
Q Consensus       318 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~  395 (421)
                      .+.+|+.+.+.  +.........+.+|.+|+.+.+..+-    ..+ ...+.++ .+|+.+.+..+  ++.++ ..+.  
T Consensus       295 ~~~~L~~i~l~--~~i~~I~~~aF~~c~~L~~i~lp~~v----~~I~~~aF~~c-~~L~~i~lp~~--l~~I~~~aF~--  363 (394)
T 4fs7_A          295 GCSSLTEVKLL--DSVKFIGEEAFESCTSLVSIDLPYLV----EEIGKRSFRGC-TSLSNINFPLS--LRKIGANAFQ--  363 (394)
T ss_dssp             TCTTCCEEEEC--TTCCEECTTTTTTCTTCCEECCCTTC----CEECTTTTTTC-TTCCEECCCTT--CCEECTTTBT--
T ss_pred             ccccccccccc--cccceechhhhcCCCCCCEEEeCCcc----cEEhHHhccCC-CCCCEEEECcc--ccEehHHHhh--
Confidence            34667777663  22332223457778888888876521    222 2345554 78888887543  44443 2333  


Q ss_pred             CCCCCccEEEEe
Q 038338          396 EGFPRLKHLHVE  407 (421)
Q Consensus       396 ~~~~~L~~L~i~  407 (421)
                       ++++|+.+++.
T Consensus       364 -~C~~L~~i~lp  374 (394)
T 4fs7_A          364 -GCINLKKVELP  374 (394)
T ss_dssp             -TCTTCCEEEEE
T ss_pred             -CCCCCCEEEEC
Confidence             78888888875

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.52  E-value=4.8e-07  Score=83.67  Aligned_cols=177  Identities=16%  Similarity=0.175  Sum_probs=87.6

Q ss_pred             CCccEEEccCCCCC-C--------CChhhhcccCCcEEEcccccCC----------C-cccccCcCCCCEEEeeCCCCcc
Q 038338          173 EELKVLSLIGIHFS-S--------LPSSLGRLINLQTLCLDWCQLE----------D-VAAIGQLKKLEILNLADSNIEQ  232 (421)
Q Consensus       173 ~~L~~L~l~~~~~~-~--------lp~~i~~l~~L~~L~l~~~~~~----------~-~~~~~~l~~L~~L~l~~~~l~~  232 (421)
                      ..++.|.+..+... .        +..++..+++|+.|.+......          . ...+..+++|+.|+++++.-..
T Consensus       107 ~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~  186 (362)
T 2ra8_A          107 PSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLS  186 (362)
T ss_dssp             GGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCB
T ss_pred             hhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCce
Confidence            45677777765443 1        2334567788999988654321          1 2333556778888887763223


Q ss_pred             cchhhcCCCCCCEEeccCCcCCcccchhhhc--CCCCCcEEEcccC--CCCCccccCCCCcChhhh--cCCCCCCEEEEE
Q 038338          233 LPLEIGQLTGLRLLDLTNCWSLQVIAPNVIS--KLSRLEELYMDNS--FSGWEKVEGGSNASLVEL--KRLTKLTTLEIE  306 (421)
Q Consensus       233 lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~--~l~~L~~L~l~~~--~~~~~~~~~~~~~~~~~l--~~l~~L~~L~l~  306 (421)
                      ++. + .+++|++|.+..|......... +.  .+++|+.|+++.+  ......   +..+....+  ..+++|+.|.+.
T Consensus       187 l~~-~-~~~~L~~L~L~~~~l~~~~l~~-l~~~~lp~L~~L~L~~~~~~~~~~~---~~~~l~~~l~~~~~p~Lr~L~L~  260 (362)
T 2ra8_A          187 IGK-K-PRPNLKSLEIISGGLPDSVVED-ILGSDLPNLEKLVLYVGVEDYGFDG---DMNVFRPLFSKDRFPNLKWLGIV  260 (362)
T ss_dssp             CCS-C-BCTTCSEEEEECSBCCHHHHHH-HHHSBCTTCCEEEEECBCGGGTCCS---CGGGTGGGSCTTTCTTCCEEEEE
T ss_pred             ecc-c-cCCCCcEEEEecCCCChHHHHH-HHHccCCCCcEEEEeccccccccch---hHHHHHHHHhcCCCCCcCEEeCC
Confidence            443 3 3677777777765432222111 22  5777777776531  100000   000111111  235667777776


Q ss_pred             ecCccc-cCCcc----cccCCceEEEEEcCCccch----hhhhhchhhhceeEEEcCCc
Q 038338          307 VRDAEI-LLPDF----VSVELQRYRIRIGDKLEYE----IDQLLVKSEALRLMMLKGLE  356 (421)
Q Consensus       307 ~~~~~~-~~~~~----~~~~L~~L~l~~~~~~~~~----~~~~~~~l~~L~~L~l~~~~  356 (421)
                      +|.+.. .+..+    .+++|+.|+++. +.+...    ++..+..+++|+.|++++|.
T Consensus       261 ~~~i~~~~~~~la~a~~~~~L~~LdLs~-n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~  318 (362)
T 2ra8_A          261 DAEEQNVVVEMFLESDILPQLETMDISA-GVLTDEGARLLLDHVDKIKHLKFINMKYNY  318 (362)
T ss_dssp             SCTTHHHHHHHHHHCSSGGGCSEEECCS-SCCBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred             CCCCchHHHHHHHhCccCCCCCEEECCC-CCCChHHHHHHHhhcccCCcceEEECCCCc
Confidence            665431 11111    235566666642 222221    22233445566666665544

>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}

Probab=98.46  E-value=1.9e-07  Score=92.98  Aligned_cols=87  Identities=14%  Similarity=0.160  Sum_probs=71.7

Q ss_pred             hhhhhHHHhhhhccCchHHHHHHHHhccCCCCCccChHHHHHHHhhhccccccccHHHHHHHHHHHHHHHHhccccccc-
Q 038338            3 KNVYLSIKLSYDFLRSEEAKSMFRLCGLYSEGHAIPVPYLLRYGVGWGLFENVYTLEEARSRVHRLIDNLKSSCLLLDG-   81 (421)
Q Consensus         3 ~~i~~~l~lSY~~L~~~~lk~cfl~~~~fp~~~~~~~~~li~~wia~g~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~-   81 (421)
                      ..+..++..||+.||+ +.|.||+++|+||+|+.++.+.+...|.+++        +    ...+++++|+++++++.. 
T Consensus       362 ~~l~~~l~~s~~~L~~-~~~~~l~~la~f~~~~~i~~~~l~~l~~~~~--------~----~~~~~l~~L~~~~Ll~~~~  428 (591)
T 1z6t_A          362 EALDEAMSISVEMLRE-DIKDYYTDLSILQKDVKVPTKVLCILWDMET--------E----EVEDILQEFVNKSLLFCDR  428 (591)
T ss_dssp             HHHHHHHHHHHHTSCT-TTHHHHHHGGGCCTTCCEEHHHHHHHHTCCH--------H----HHHHHHHHHHHTTSSEEEE
T ss_pred             HHHHHHHHHHHHhCCH-HHHHHHHHccccCCCCccCHHHHHHHhccCH--------H----HHHHHHHHHHhCcCeEEec
Confidence            3678899999999998 5999999999999999999999999997531        1    235578899999999743 


Q ss_pred             -CCCCceeccchHHHHHHHHhh
Q 038338           82 -DAEDEVKMHDIIHVVAVSVAA  102 (421)
Q Consensus        82 -~~~~~~~~hd~~~~l~~~~~~  102 (421)
                       +....|+||+++++++.....
T Consensus       429 ~~~~~~~~~H~lv~~~~~~~~~  450 (591)
T 1z6t_A          429 NGKSFRYYLHDLQVDFLTEKNC  450 (591)
T ss_dssp             ETTEEEEECCHHHHHHHHHHTG
T ss_pred             CCCccEEEEcHHHHHHHHhhhh
Confidence             233469999999999988743

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.37  E-value=3.7e-07  Score=74.44  Aligned_cols=90  Identities=10%  Similarity=-0.061  Sum_probs=49.7

Q ss_pred             cCCceEEEEEcCCccchhhhhhchhhhceeEEEcCCcccccccchhHHHHh---hhcccEEEeccccCccccc-cccccc
Q 038338          320 VELQRYRIRIGDKLEYEIDQLLVKSEALRLMMLKGLEKVSILQENDGTKML---LQRTEDLWLVKLEGVQNVV-HELDDG  395 (421)
Q Consensus       320 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~---~~~L~~L~l~~~~~~~~~~-~~~~~~  395 (421)
                      ..|+.|+++++. .+......+..|++|++|++++|.. -.......+..+   .++|++|++++|..+++.. ..+.  
T Consensus        61 ~~L~~LDLs~~~-Itd~GL~~L~~~~~L~~L~L~~C~~-ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~--  136 (176)
T 3e4g_A           61 YKIQAIDATDSC-IMSIGFDHMEGLQYVEKIRLCKCHY-IEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALH--  136 (176)
T ss_dssp             CCEEEEEEESCC-CCGGGGGGGTTCSCCCEEEEESCTT-CCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGG--
T ss_pred             ceEeEEeCcCCC-ccHHHHHHhcCCCCCCEEEeCCCCc-cCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHh--
Confidence            456666666555 3333344456677777777777651 111222223321   2467777777776654432 2222  


Q ss_pred             CCCCCccEEEEeecCceee
Q 038338          396 EGFPRLKHLHVESCYEIVH  414 (421)
Q Consensus       396 ~~~~~L~~L~i~~c~~L~~  414 (421)
                       .+++|+.|++++|+.+..
T Consensus       137 -~~~~L~~L~L~~c~~Itd  154 (176)
T 3e4g_A          137 -HFRNLKYLFLSDLPGVKE  154 (176)
T ss_dssp             -GCTTCCEEEEESCTTCCC
T ss_pred             -cCCCCCEEECCCCCCCCc
Confidence             567777777777776654

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.30  E-value=6.2e-07  Score=73.10  Aligned_cols=84  Identities=15%  Similarity=0.233  Sum_probs=53.7

Q ss_pred             CCccEEEccCCCCCC-CChhhhcccCCcEEEccccc-CCC--cccccCc----CCCCEEEeeCC-CCc-ccchhhcCCCC
Q 038338          173 EELKVLSLIGIHFSS-LPSSLGRLINLQTLCLDWCQ-LED--VAAIGQL----KKLEILNLADS-NIE-QLPLEIGQLTG  242 (421)
Q Consensus       173 ~~L~~L~l~~~~~~~-lp~~i~~l~~L~~L~l~~~~-~~~--~~~~~~l----~~L~~L~l~~~-~l~-~lp~~~~~l~~  242 (421)
                      ..|+.||+++|.++. -...+..+++|+.|++++|. +++  ...++.+    ++|++|++++| +++ .--..+..+++
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~  140 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN  140 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence            467888888877654 12335677777777777775 555  5556554    36777777776 466 11234556777


Q ss_pred             CCEEeccCCcCCcc
Q 038338          243 LRLLDLTNCWSLQV  256 (421)
Q Consensus       243 L~~L~l~~~~~~~~  256 (421)
                      |++|++++|..++.
T Consensus       141 L~~L~L~~c~~Itd  154 (176)
T 3e4g_A          141 LKYLFLSDLPGVKE  154 (176)
T ss_dssp             CCEEEEESCTTCCC
T ss_pred             CCEEECCCCCCCCc
Confidence            77777777765554

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.28  E-value=7.7e-07  Score=74.19  Aligned_cols=80  Identities=16%  Similarity=0.157  Sum_probs=40.9

Q ss_pred             hccCCCccEEEccCC-CCCC-----CChhhhcccCCcEEEcccccCCC--c----ccccCcCCCCEEEeeCCCCc-----
Q 038338          169 FEGTEELKVLSLIGI-HFSS-----LPSSLGRLINLQTLCLDWCQLED--V----AAIGQLKKLEILNLADSNIE-----  231 (421)
Q Consensus       169 ~~~l~~L~~L~l~~~-~~~~-----lp~~i~~l~~L~~L~l~~~~~~~--~----~~~~~l~~L~~L~l~~~~l~-----  231 (421)
                      +...+.|++|++++| .+..     +...+....+|++|++++|.+.+  .    ..+...++|++|++++|.+.     
T Consensus        32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~  111 (185)
T 1io0_A           32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL  111 (185)
T ss_dssp             HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred             HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence            344556666666665 5532     33334445556666666665544  1    22333455666666665554     


Q ss_pred             ccchhhcCCCCCCEEec
Q 038338          232 QLPLEIGQLTGLRLLDL  248 (421)
Q Consensus       232 ~lp~~~~~l~~L~~L~l  248 (421)
                      .+...+...++|++|++
T Consensus       112 ~l~~~L~~n~~L~~L~L  128 (185)
T 1io0_A          112 ALVEALQSNTSLIELRI  128 (185)
T ss_dssp             HHHHGGGGCSSCCEEEC
T ss_pred             HHHHHHHhCCCceEEEe
Confidence            23334444555555555

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.19  E-value=1.3e-06  Score=72.73  Aligned_cols=106  Identities=17%  Similarity=0.156  Sum_probs=71.5

Q ss_pred             CCCCccEEEeeec-CCCCcc---cChHHhccCCCccEEEccCCCCCC-----CChhhhcccCCcEEEcccccCCC-----
Q 038338          145 QCPNLQLFLLFRQ-GYGPVQ---ISDLFFEGTEELKVLSLIGIHFSS-----LPSSLGRLINLQTLCLDWCQLED-----  210 (421)
Q Consensus       145 ~~~~L~~L~l~~~-~~~~~~---~~~~~~~~l~~L~~L~l~~~~~~~-----lp~~i~~l~~L~~L~l~~~~~~~-----  210 (421)
                      ..+.|+.|++++| .+ ...   .....+...++|++|++++|.+..     +...+....+|++|++++|.+.+     
T Consensus        34 ~~~~L~~L~L~~n~~i-~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~  112 (185)
T 1io0_A           34 NDPDLEEVNLNNIMNI-PVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA  112 (185)
T ss_dssp             TCTTCCEEECTTCTTC-CHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred             cCCCCCEEEecCCCCC-CHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHH
Confidence            4566777777766 54 111   112223556788888888888754     44456666788888888888776     


Q ss_pred             -cccccCcCCCCEEEe--eCCCCc-----ccchhhcCCCCCCEEeccCC
Q 038338          211 -VAAIGQLKKLEILNL--ADSNIE-----QLPLEIGQLTGLRLLDLTNC  251 (421)
Q Consensus       211 -~~~~~~l~~L~~L~l--~~~~l~-----~lp~~~~~l~~L~~L~l~~~  251 (421)
                       ...+...++|++|++  ++|.+.     .+...+...++|++|++++|
T Consensus       113 l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n  161 (185)
T 1io0_A          113 LVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT  161 (185)
T ss_dssp             HHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred             HHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence             255666788999999  778776     24445566677888888775

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.08  E-value=2e-05  Score=74.05  Aligned_cols=231  Identities=12%  Similarity=0.061  Sum_probs=142.3

Q ss_pred             cCCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCC-ChhhhcccCCcEEEcccccCCCcccccCcCCCCE
Q 038338          144 LQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSL-PSSLGRLINLQTLCLDWCQLEDVAAIGQLKKLEI  222 (421)
Q Consensus       144 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~  222 (421)
                      .++++|+.+.+..+   ...+....|..+.+|+.+.+..+ ++.+ ...+..+..|+.+.+..+...-........+|+.
T Consensus       159 ~~c~~L~~i~l~~~---~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~i~~~~~~~~~l~~  234 (394)
T 4fs7_A          159 ATCESLEYVSLPDS---METLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYYLGDFALSKTGVKN  234 (394)
T ss_dssp             TTCTTCCEEECCTT---CCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCEECTTTTTTCCCCE
T ss_pred             cccCCCcEEecCCc---cceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceEeehhhcccCCCce
Confidence            37889999988765   34566777788999999988766 4443 3346677788877766544222233334567888


Q ss_pred             EEeeCCCCcccc-hhhcCCCCCCEEeccCCcCCcccchhhhcCCCCCcEEEcccCCCCCccccCCCCcChhhhcCCCCCC
Q 038338          223 LNLADSNIEQLP-LEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNSFSGWEKVEGGSNASLVELKRLTKLT  301 (421)
Q Consensus       223 L~l~~~~l~~lp-~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~  301 (421)
                      +.+... +..+. ..+..+.+|+.+.+..+  ...+....+..+..++........+.   .        ..+..+.+|+
T Consensus       235 i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~--~~~i~~~~F~~~~~l~~~~~~~~~i~---~--------~~F~~~~~L~  300 (394)
T 4fs7_A          235 IIIPDS-FTELGKSVFYGCTDLESISIQNN--KLRIGGSLFYNCSGLKKVIYGSVIVP---E--------KTFYGCSSLT  300 (394)
T ss_dssp             EEECTT-CCEECSSTTTTCSSCCEEEECCT--TCEECSCTTTTCTTCCEEEECSSEEC---T--------TTTTTCTTCC
T ss_pred             EEECCC-ceecccccccccccceeEEcCCC--cceeeccccccccccceeccCceeec---c--------cccccccccc
Confidence            877653 34333 34667888888888763  23444444677788887776543211   1        3466778888


Q ss_pred             EEEEEecCccccCCcc--cccCCceEEEEEcCCccchhhhhhchhhhceeEEEcCCcccccccchhHHHHhhhcccEEEe
Q 038338          302 TLEIEVRDAEILLPDF--VSVELQRYRIRIGDKLEYEIDQLLVKSEALRLMMLKGLEKVSILQENDGTKMLLQRTEDLWL  379 (421)
Q Consensus       302 ~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l  379 (421)
                      .+.+.. .+..++...  .+.+|+.+.+.  +.........+.+|.+|+.+.+..+-  ... ....+.++ ++|+.+++
T Consensus       301 ~i~l~~-~i~~I~~~aF~~c~~L~~i~lp--~~v~~I~~~aF~~c~~L~~i~lp~~l--~~I-~~~aF~~C-~~L~~i~l  373 (394)
T 4fs7_A          301 EVKLLD-SVKFIGEEAFESCTSLVSIDLP--YLVEEIGKRSFRGCTSLSNINFPLSL--RKI-GANAFQGC-INLKKVEL  373 (394)
T ss_dssp             EEEECT-TCCEECTTTTTTCTTCCEECCC--TTCCEECTTTTTTCTTCCEECCCTTC--CEE-CTTTBTTC-TTCCEEEE
T ss_pred             cccccc-ccceechhhhcCCCCCCEEEeC--CcccEEhHHhccCCCCCCEEEECccc--cEe-hHHHhhCC-CCCCEEEE
Confidence            888753 355554442  45788888773  33333334567889999999887742  111 12345555 88999988


Q ss_pred             ccccCcccccccccccCCCCCccEE
Q 038338          380 VKLEGVQNVVHELDDGEGFPRLKHL  404 (421)
Q Consensus       380 ~~~~~~~~~~~~~~~~~~~~~L~~L  404 (421)
                      ...  ++.+...+.   ++++|+.+
T Consensus       374 p~~--~~~~~~~F~---~c~~L~~I  393 (394)
T 4fs7_A          374 PKR--LEQYRYDFE---DTTKFKWI  393 (394)
T ss_dssp             EGG--GGGGGGGBC---TTCEEEEE
T ss_pred             CCC--CEEhhheec---CCCCCcEE
Confidence            643  333333333   55555543

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.08  E-value=9.8e-05  Score=69.28  Aligned_cols=265  Identities=12%  Similarity=0.084  Sum_probs=130.8

Q ss_pred             CCeEEEcCCCCCccCCccc--CCCCccEEEeeecCC-CCcccChHHhccCCCccEEEccCCCCCCCC-hhhhcccCCcEE
Q 038338          126 DPIAISLPQRNIQELPERL--QCPNLQLFLLFRQGY-GPVQISDLFFEGTEELKVLSLIGIHFSSLP-SSLGRLINLQTL  201 (421)
Q Consensus       126 ~l~~l~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~-~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp-~~i~~l~~L~~L  201 (421)
                      .++.+.+..+ +..+....  +|.+|+.+.+..+.. ....+....|..+.+|+.+.+..+ ++.++ ..+..+.+|+.+
T Consensus        65 ~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i  142 (394)
T 4gt6_A           65 VLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTV  142 (394)
T ss_dssp             CCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEE
T ss_pred             cCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhcccccc
Confidence            4777777643 44454333  778888888876531 134555666677777777766544 33333 335667777777


Q ss_pred             EcccccCCC-cccccCcCCCCEEEeeCCCCcccchhhcCCCCCCEEeccCCcCCcccchhhhcCCCCCcEEEcccCCCCC
Q 038338          202 CLDWCQLED-VAAIGQLKKLEILNLADSNIEQLPLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNSFSGW  280 (421)
Q Consensus       202 ~l~~~~~~~-~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  280 (421)
                      .+..+...- ...+..+.+|+.+.+..+ +..+........+|+.+.+...  ...+....+..+.++............
T Consensus       143 ~lp~~~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~~~l~~i~ip~~--~~~i~~~af~~c~~l~~~~~~~~~~~~  219 (394)
T 4gt6_A          143 TIPEGVTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTGTALTQIHIPAK--VTRIGTNAFSECFALSTITSDSESYPA  219 (394)
T ss_dssp             ECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCCCSEEEECTT--CCEECTTTTTTCTTCCEEEECCSSSCB
T ss_pred             cccceeeeecccceecccccccccccce-eeEeccccccccceeEEEECCc--ccccccchhhhccccceeccccccccc
Confidence            775433221 455666777777777543 4444433333455666666442  222222234445555544432211110


Q ss_pred             cccc-------------------------C--CCC-cChhhhcCCCCCCEEEEEecCccccCCcc--cccCCceEEEEEc
Q 038338          281 EKVE-------------------------G--GSN-ASLVELKRLTKLTTLEIEVRDAEILLPDF--VSVELQRYRIRIG  330 (421)
Q Consensus       281 ~~~~-------------------------~--~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~  330 (421)
                      ....                         .  +.. --...+..+..|+.+.+..+. ..+....  .+++|+.+.+.  
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~v~~i~~~aF~~c~~L~~i~lp~~~-~~I~~~aF~~c~~L~~i~l~--  296 (394)
T 4gt6_A          220 IDNVLYEKSANGDYALIRYPSQREDPAFKIPNGVARIETHAFDSCAYLASVKMPDSV-VSIGTGAFMNCPALQDIEFS--  296 (394)
T ss_dssp             SSSCEEEECTTSCEEEEECCTTCCCSEEECCTTEEEECTTTTTTCSSCCEEECCTTC-CEECTTTTTTCTTCCEEECC--
T ss_pred             ccceeecccccccccccccccccccceEEcCCcceEcccceeeecccccEEeccccc-ceecCcccccccccccccCC--
Confidence            0000                         0  000 001234555666666553222 2222221  33566666652  


Q ss_pred             CCccchhhhhhchhhhceeEEEcCCcccccccc-hhHHHHhhhcccEEEeccccCccccc-ccccccCCCCCccEEEEee
Q 038338          331 DKLEYEIDQLLVKSEALRLMMLKGLEKVSILQE-NDGTKMLLQRTEDLWLVKLEGVQNVV-HELDDGEGFPRLKHLHVES  408 (421)
Q Consensus       331 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~~~~L~~L~i~~  408 (421)
                      +.........+.+|.+|+.+.+..+-    ..+ ...+.++ .+|+.+.|-..  ++.+. ..+.   ++++|+.+++.+
T Consensus       297 ~~i~~I~~~aF~~c~~L~~i~lp~~v----~~I~~~aF~~C-~~L~~i~ip~s--v~~I~~~aF~---~C~~L~~i~~~~  366 (394)
T 4gt6_A          297 SRITELPESVFAGCISLKSIDIPEGI----TQILDDAFAGC-EQLERIAIPSS--VTKIPESAFS---NCTALNNIEYSG  366 (394)
T ss_dssp             TTCCEECTTTTTTCTTCCEEECCTTC----CEECTTTTTTC-TTCCEEEECTT--CCBCCGGGGT---TCTTCCEEEESS
T ss_pred             CcccccCceeecCCCCcCEEEeCCcc----cEehHhHhhCC-CCCCEEEECcc--cCEEhHhHhh---CCCCCCEEEECC
Confidence            22222223446667777777776521    112 2234444 67777777432  33333 2233   667777776653

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.05  E-value=9.7e-05  Score=69.31  Aligned_cols=257  Identities=12%  Similarity=0.105  Sum_probs=132.0

Q ss_pred             ccCccCCCeEEEcCCCC---CccCCccc--CCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCC-Chhhh
Q 038338          120 EETIRKDPIAISLPQRN---IQELPERL--QCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSL-PSSLG  193 (421)
Q Consensus       120 ~~~~~~~l~~l~l~~~~---~~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~i~  193 (421)
                      .+..+.+++.+.+..+.   +..+....  .+.+|+.+.+..+   ...+....|..+.+|+.+.+.... ..+ ...+.
T Consensus        82 AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~---~~~I~~~aF~~c~~L~~i~lp~~~-~~I~~~~F~  157 (394)
T 4gt6_A           82 AFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS---VTEIDSEAFHHCEELDTVTIPEGV-TSVADGMFS  157 (394)
T ss_dssp             TTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT---CSEECTTTTTTCTTCCEEECCTTC-CEECTTTTT
T ss_pred             HhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc---cceehhhhhhhhccccccccccee-eeeccccee
Confidence            45567888888886553   33343222  5667766655443   344555556677777777776432 222 22345


Q ss_pred             cccCCcEEEcccccCCC--cccccCcCCCCEEEeeCCCCcccchhhcCCCCCCE--------------------------
Q 038338          194 RLINLQTLCLDWCQLED--VAAIGQLKKLEILNLADSNIEQLPLEIGQLTGLRL--------------------------  245 (421)
Q Consensus       194 ~l~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~--------------------------  245 (421)
                      .+..|+.+.+..+ +..  ...+. ..+|+.+.+..+-..--...+..+.++..                          
T Consensus       158 ~c~~L~~i~~~~~-~~~I~~~aF~-~~~l~~i~ip~~~~~i~~~af~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (394)
T 4gt6_A          158 YCYSLHTVTLPDS-VTAIEERAFT-GTALTQIHIPAKVTRIGTNAFSECFALSTITSDSESYPAIDNVLYEKSANGDYAL  235 (394)
T ss_dssp             TCTTCCEEECCTT-CCEECTTTTT-TCCCSEEEECTTCCEECTTTTTTCTTCCEEEECCSSSCBSSSCEEEECTTSCEEE
T ss_pred             cccccccccccce-eeEecccccc-ccceeEEEECCcccccccchhhhccccceecccccccccccceeecccccccccc
Confidence            5666666665443 121  12222 23444444433211111111222222222                          


Q ss_pred             -----------EeccCCcCCcccchhhhcCCCCCcEEEcccCCCCCccccCCCCcChhhhcCCCCCCEEEEEecCccccC
Q 038338          246 -----------LDLTNCWSLQVIAPNVISKLSRLEELYMDNSFSGWEKVEGGSNASLVELKRLTKLTTLEIEVRDAEILL  314 (421)
Q Consensus       246 -----------L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~  314 (421)
                                 +.+..  .+..+....+..+..|+.+.+..+.. ....        ..+.+++.|+.+.+. +.+..++
T Consensus       236 ~~~~~~~~~~~~~ip~--~v~~i~~~aF~~c~~L~~i~lp~~~~-~I~~--------~aF~~c~~L~~i~l~-~~i~~I~  303 (394)
T 4gt6_A          236 IRYPSQREDPAFKIPN--GVARIETHAFDSCAYLASVKMPDSVV-SIGT--------GAFMNCPALQDIEFS-SRITELP  303 (394)
T ss_dssp             EECCTTCCCSEEECCT--TEEEECTTTTTTCSSCCEEECCTTCC-EECT--------TTTTTCTTCCEEECC-TTCCEEC
T ss_pred             cccccccccceEEcCC--cceEcccceeeecccccEEecccccc-eecC--------cccccccccccccCC-CcccccC
Confidence                       22221  12223333466777788877754321 1111        456677888888774 4455565


Q ss_pred             Ccc--cccCCceEEEEEcCCccchhhhhhchhhhceeEEEcCCcccccccc-hhHHHHhhhcccEEEeccccCccccccc
Q 038338          315 PDF--VSVELQRYRIRIGDKLEYEIDQLLVKSEALRLMMLKGLEKVSILQE-NDGTKMLLQRTEDLWLVKLEGVQNVVHE  391 (421)
Q Consensus       315 ~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~  391 (421)
                      ...  .+.+|+.+.+.  +.........+.+|.+|+.+.+..+-    ..+ ...+.++ ++|+.+++.++..  .+ ..
T Consensus       304 ~~aF~~c~~L~~i~lp--~~v~~I~~~aF~~C~~L~~i~ip~sv----~~I~~~aF~~C-~~L~~i~~~~~~~--~~-~~  373 (394)
T 4gt6_A          304 ESVFAGCISLKSIDIP--EGITQILDDAFAGCEQLERIAIPSSV----TKIPESAFSNC-TALNNIEYSGSRS--QW-NA  373 (394)
T ss_dssp             TTTTTTCTTCCEEECC--TTCCEECTTTTTTCTTCCEEEECTTC----CBCCGGGGTTC-TTCCEEEESSCHH--HH-HT
T ss_pred             ceeecCCCCcCEEEeC--CcccEehHhHhhCCCCCCEEEECccc----CEEhHhHhhCC-CCCCEEEECCcee--eh-hh
Confidence            543  45788888873  23332334567888999999987632    222 3345565 8899998876542  11 12


Q ss_pred             ccccCCCCCccEEEEe
Q 038338          392 LDDGEGFPRLKHLHVE  407 (421)
Q Consensus       392 ~~~~~~~~~L~~L~i~  407 (421)
                      +.   .+.+|+.+.+.
T Consensus       374 ~~---~~~~L~~i~i~  386 (394)
T 4gt6_A          374 IS---TDSGLQNLPVA  386 (394)
T ss_dssp             CB---CCCCC------
T ss_pred             hh---ccCCCCEEEeC
Confidence            22   56677777664

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.97  E-value=1.1e-05  Score=70.69  Aligned_cols=77  Identities=19%  Similarity=0.230  Sum_probs=35.6

Q ss_pred             ccCCcEEEcccccCCC----cccccCcCCCCEEEeeCCCCcccchhhcCCC--CCCEEeccCCcCCcccc------hhhh
Q 038338          195 LINLQTLCLDWCQLED----VAAIGQLKKLEILNLADSNIEQLPLEIGQLT--GLRLLDLTNCWSLQVIA------PNVI  262 (421)
Q Consensus       195 l~~L~~L~l~~~~~~~----~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~--~L~~L~l~~~~~~~~~~------~~~l  262 (421)
                      +++|+.|++++|.+..    +..+..+++|+.|+|++|++..+ ..+..+.  +|++|++++|...+..|      ...+
T Consensus       169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il  247 (267)
T 3rw6_A          169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIR  247 (267)
T ss_dssp             CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHH
T ss_pred             CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCccccCcchhHHHHHH
Confidence            4455555555555444    12233455555555555555443 2233333  55555555544433222      1224


Q ss_pred             cCCCCCcEEE
Q 038338          263 SKLSRLEELY  272 (421)
Q Consensus       263 ~~l~~L~~L~  272 (421)
                      ..+++|+.|+
T Consensus       248 ~~~P~L~~LD  257 (267)
T 3rw6_A          248 ERFPKLLRLD  257 (267)
T ss_dssp             HHCTTCCEES
T ss_pred             HHCcccCeEC
Confidence            5566666665

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.94  E-value=2.2e-06  Score=75.26  Aligned_cols=77  Identities=26%  Similarity=0.249  Sum_probs=39.3

Q ss_pred             cCCCccEEEccCCCCCCC---ChhhhcccCCcEEEcccccCCCcccccCcC--CCCEEEeeCCCCc-ccc-------hhh
Q 038338          171 GTEELKVLSLIGIHFSSL---PSSLGRLINLQTLCLDWCQLEDVAAIGQLK--KLEILNLADSNIE-QLP-------LEI  237 (421)
Q Consensus       171 ~l~~L~~L~l~~~~~~~l---p~~i~~l~~L~~L~l~~~~~~~~~~~~~l~--~L~~L~l~~~~l~-~lp-------~~~  237 (421)
                      ++++|+.|+|++|.+..+   |..+..+++|++|++++|.+.+...+..+.  +|++|++++|.+. .+|       ..+
T Consensus       168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il  247 (267)
T 3rw6_A          168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIR  247 (267)
T ss_dssp             HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHH
T ss_pred             hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccCCcceEEccCCcCccccCcchhHHHHHH
Confidence            355566666666655442   234445566666666666555533333333  5566666665554 222       123


Q ss_pred             cCCCCCCEEe
Q 038338          238 GQLTGLRLLD  247 (421)
Q Consensus       238 ~~l~~L~~L~  247 (421)
                      ..+++|+.|+
T Consensus       248 ~~~P~L~~LD  257 (267)
T 3rw6_A          248 ERFPKLLRLD  257 (267)
T ss_dssp             HHCTTCCEES
T ss_pred             HHCcccCeEC
Confidence            4555555554

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=96.97  E-value=0.014  Score=53.98  Aligned_cols=54  Identities=13%  Similarity=0.148  Sum_probs=23.7

Q ss_pred             CCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCC-ChhhhcccCCcEEEccc
Q 038338          147 PNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSL-PSSLGRLINLQTLCLDW  205 (421)
Q Consensus       147 ~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~  205 (421)
                      .+|+.+.+..+.   ..+....|... .|..+.+..+ ++.+ ...+..+.++....+..
T Consensus       113 ~~L~~i~lp~~~---~~i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~  167 (379)
T 4h09_A          113 TDLDDFEFPGAT---TEIGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSS  167 (379)
T ss_dssp             CCCSEEECCTTC---CEECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECT
T ss_pred             CCcccccCCCcc---ccccccccccc-eeeeeeccce-eeccccchhccccccccccccc
Confidence            467777775542   23333334333 4444444433 2221 22234445555554443

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=96.85  E-value=0.013  Score=54.29  Aligned_cols=124  Identities=15%  Similarity=0.226  Sum_probs=61.4

Q ss_pred             hccCCCccEEEccCCCCCCC-ChhhhcccCCcEEEcccccCCC--cccccCcCCCCEEEeeCCCCcccchh-hcCCCCCC
Q 038338          169 FEGTEELKVLSLIGIHFSSL-PSSLGRLINLQTLCLDWCQLED--VAAIGQLKKLEILNLADSNIEQLPLE-IGQLTGLR  244 (421)
Q Consensus       169 ~~~l~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~  244 (421)
                      +....+|+.+.+..+ +..+ ...+..+..|+.+.+..+ ++.  ...+.++.+|+.+.+.. ++..++.. +..+++|+
T Consensus       213 f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~-~i~~i~~~aF~~c~~L~  289 (379)
T 4h09_A          213 FSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYA-KVKTVPYLLCSGCSNLT  289 (379)
T ss_dssp             TTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECC-CCSEECTTTTTTCTTCC
T ss_pred             cccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhccccccc-cceeccccccccccccc
Confidence            344556666655443 2222 223445555666655443 222  34455556666666543 24444332 45566666


Q ss_pred             EEeccCCcCCcccchhhhcCCCCCcEEEcccCCCCCccccCCCCcChhhhcCCCCCCEEEE
Q 038338          245 LLDLTNCWSLQVIAPNVISKLSRLEELYMDNSFSGWEKVEGGSNASLVELKRLTKLTTLEI  305 (421)
Q Consensus       245 ~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l  305 (421)
                      .+.+.+ ..+..++...+..+.+|+.+.+..+ +.....        ..+.++.+|+.+.+
T Consensus       290 ~i~l~~-~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~--------~aF~~C~~L~~i~i  340 (379)
T 4h09_A          290 KVVMDN-SAIETLEPRVFMDCVKLSSVTLPTA-LKTIQV--------YAFKNCKALSTISY  340 (379)
T ss_dssp             EEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECT--------TTTTTCTTCCCCCC
T ss_pred             cccccc-cccceehhhhhcCCCCCCEEEcCcc-ccEEHH--------HHhhCCCCCCEEEE
Confidence            666654 2344455444566666666665432 222211        34555566665555

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.55  E-value=0.0041  Score=51.48  Aligned_cols=81  Identities=16%  Similarity=0.188  Sum_probs=41.4

Q ss_pred             ccCCCccEEEccCC-CCCC-----CChhhhcccCCcEEEcccccCCC--c----ccccCcCCCCEEEeeCCCCc-----c
Q 038338          170 EGTEELKVLSLIGI-HFSS-----LPSSLGRLINLQTLCLDWCQLED--V----AAIGQLKKLEILNLADSNIE-----Q  232 (421)
Q Consensus       170 ~~l~~L~~L~l~~~-~~~~-----lp~~i~~l~~L~~L~l~~~~~~~--~----~~~~~l~~L~~L~l~~~~l~-----~  232 (421)
                      ..-+.|+.|+|+++ .+..     +...+..-.+|+.|++++|.+.+  .    ..+..-+.|++|+|++|.|.     .
T Consensus        38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a  117 (197)
T 1pgv_A           38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR  117 (197)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred             hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence            34455666666654 4432     33334445556666666666554  2    22233355666666666555     2


Q ss_pred             cchhhcCCCCCCEEeccC
Q 038338          233 LPLEIGQLTGLRLLDLTN  250 (421)
Q Consensus       233 lp~~~~~l~~L~~L~l~~  250 (421)
                      +-..+..-+.|++|++++
T Consensus       118 la~aL~~N~tL~~L~L~n  135 (197)
T 1pgv_A          118 LLRSTLVTQSIVEFKADN  135 (197)
T ss_dssp             HHHHTTTTCCCSEEECCC
T ss_pred             HHHHHhhCCceeEEECCC
Confidence            223333344456665554

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=95.68  E-value=0.0086  Score=49.56  Aligned_cols=112  Identities=16%  Similarity=0.178  Sum_probs=58.6

Q ss_pred             hcccCCcEEEcccc-cCCC------cccccCcCCCCEEEeeCCCCc-----ccchhhcCCCCCCEEeccCCcCCcc----
Q 038338          193 GRLINLQTLCLDWC-QLED------VAAIGQLKKLEILNLADSNIE-----QLPLEIGQLTGLRLLDLTNCWSLQV----  256 (421)
Q Consensus       193 ~~l~~L~~L~l~~~-~~~~------~~~~~~l~~L~~L~l~~~~l~-----~lp~~~~~l~~L~~L~l~~~~~~~~----  256 (421)
                      ..-..|+.|+++++ .+.+      .+.+..-+.|+.|+|++|.+.     .+...+..-+.|++|++++|.....    
T Consensus        38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a  117 (197)
T 1pgv_A           38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR  117 (197)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred             hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence            34456888888775 5543      144455567777777777766     3333444556677777776533211    


Q ss_pred             cchhhhcCCCCCcEEEcccCCC---CCccccCCCCcChhhhcCCCCCCEEEEEecC
Q 038338          257 IAPNVISKLSRLEELYMDNSFS---GWEKVEGGSNASLVELKRLTKLTTLEIEVRD  309 (421)
Q Consensus       257 ~~~~~l~~l~~L~~L~l~~~~~---~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~  309 (421)
                      +.. .+..-+.|++|+++++..   +..    +..++.+.+..-+.|+.|++..+.
T Consensus       118 la~-aL~~N~tL~~L~L~n~~~~~ig~~----g~~~ia~aL~~N~tL~~L~l~~~~  168 (197)
T 1pgv_A          118 LLR-STLVTQSIVEFKADNQRQSVLGNQ----VEMDMMMAIEENESLLRVGISFAS  168 (197)
T ss_dssp             HHH-HTTTTCCCSEEECCCCSSCCCCHH----HHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             HHH-HHhhCCceeEEECCCCcCcCcCHH----HHHHHHHHHHhCCCcCeEeccCCC
Confidence            111 134445566666654321   111    011233445555566666555443

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=95.14  E-value=0.037  Score=42.50  Aligned_cols=33  Identities=18%  Similarity=0.149  Sum_probs=16.0

Q ss_pred             CcEEEcccccCCC--cccccCcCCCCEEEeeCCCC
Q 038338          198 LQTLCLDWCQLED--VAAIGQLKKLEILNLADSNI  230 (421)
Q Consensus       198 L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~l  230 (421)
                      |++|++++|.++.  +..+..+++|+.|+|.+|.+
T Consensus        33 l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A           33 TTELVLTGNNLTALPPGLLDALPALRTAHLGANPW   67 (130)
T ss_dssp             CSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred             CCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence            4555555555444  23344455555555555443

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=94.47  E-value=0.065  Score=41.07  Aligned_cols=33  Identities=21%  Similarity=0.314  Sum_probs=14.0

Q ss_pred             CCEEeccCCcCCcccchhhhcCCCCCcEEEcccC
Q 038338          243 LRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNS  276 (421)
Q Consensus       243 L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~  276 (421)
                      |++|++++| .+..++.+.+..+++|+.|++.+|
T Consensus        33 l~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~N   65 (130)
T 3rfe_A           33 TTELVLTGN-NLTALPPGLLDALPALRTAHLGAN   65 (130)
T ss_dssp             CSEEECTTS-CCSSCCTTTGGGCTTCCEEECCSS
T ss_pred             CCEEECCCC-cCCccChhhhhhccccCEEEecCC
Confidence            444444442 333344333444444444444444

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	421
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-10
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-07
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	5e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.001
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	3e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	4e-05
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	9e-05
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	1e-04
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	1e-04
d1m9la_	198	c.10.3.1 (A:) Outer arm dynein light chain 1 {Gree	1e-04
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-04
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	0.001
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	2e-04
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	0.001
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	0.001
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	0.003
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	0.004
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.004

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 60.0 bits (144), Expect = 2e-10
 Identities = 33/168 (19%), Positives = 65/168 (38%), Gaps = 31/168 (18%)

Query: 130 ISLPQRNIQELPERLQCPNLQLFLLFRQGYGPVQISDLF-FEGTEELKVLSLIGIHFSSL 188
           +SL    ++++       NL    L        QIS+L    G  +L  L L     S++
Sbjct: 224 LSLNGNQLKDIGTLASLTNLTDLDLANN-----QISNLAPLSGLTKLTELKLGANQISNI 278

Query: 189 PSSLG---------------------RLINLQTLCLDWCQLEDVAAIGQLKKLEILNLAD 227
               G                      L NL  L L +  + D++ +  L KL+ L  A+
Sbjct: 279 SPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFAN 338

Query: 228 SNIEQLPLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDN 275
           + +  +   +  LT +  L   +   +  + P  ++ L+R+ +L +++
Sbjct: 339 NKVSDVS-SLANLTNINWLSAGHN-QISDLTP--LANLTRITQLGLND 382

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 50.0 bits (118), Expect = 3e-07
 Identities = 39/164 (23%), Positives = 62/164 (37%), Gaps = 37/164 (22%)

Query: 175 LKVLSLIGIHFSSLPSSLGRLINLQTLCLDWCQLEDVAAIGQLKKLEILNLADSNIEQLP 234
           L  LSL G     + + L  L NL  L L   Q+ ++A +  L KL  L L  + I  + 
Sbjct: 221 LDELSLNGNQLKDIGT-LASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNIS 279

Query: 235 LEIG---------------------QLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYM 273
              G                      L  L  L L    ++  I+P  +S L++L+ L+ 
Sbjct: 280 PLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFN-NISDISP--VSSLTKLQRLFF 336

Query: 274 -DNSFSGWEKVEGGSN-----------ASLVELKRLTKLTTLEI 305
            +N  S    +   +N           + L  L  LT++T L +
Sbjct: 337 ANNKVSDVSSLANLTNINWLSAGHNQISDLTPLANLTRITQLGL 380

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 46.1 bits (108), Expect = 5e-06
 Identities = 16/92 (17%), Positives = 38/92 (41%), Gaps = 1/92 (1%)

Query: 161 PVQISDLFFEGTEELKVLSLIGIHFSSLPSSLGRLINLQTLCLDWCQLEDVAAIGQLKKL 220
              I+ +F +     K+ +++G    +   S   L  + TL  D   ++ +  +  L  L
Sbjct: 9   DTPINQIFTDTALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNL 68

Query: 221 EILNLADSNIEQLPLEIGQLTGLRLLDLTNCW 252
             +N +++ +  +   +  LT L  + + N  
Sbjct: 69  TQINFSNNQLTDIT-PLKNLTKLVDILMNNNQ 99

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 49.4 bits (116), Expect = 3e-07
 Identities = 13/71 (18%), Positives = 30/71 (42%), Gaps = 5/71 (7%)

Query: 175 LKVLSLIGIHFSSLPSSLGRLINLQTLCLDWCQLEDVAAIGQLKKLEILNLADSNIEQLP 234
           L+ L++       LP+       L+ L   +  L +V  +   + L+ L++  + + + P
Sbjct: 286 LEELNVSNNKLIELPALPP---RLERLIASFNHLAEVPEL--PQNLKQLHVEYNPLREFP 340

Query: 235 LEIGQLTGLRL 245
                +  LR+
Sbjct: 341 DIPESVEDLRM 351

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.0 bits (104), Expect = 1e-05
 Identities = 12/97 (12%), Positives = 39/97 (40%), Gaps = 12/97 (12%)

Query: 196 INLQTLCLDWCQLEDVAA---IGQLKKLEILNLADSNI-----EQLPLEIGQLTGLRLLD 247
           +++Q+L +   +L D      +  L++ +++ L D  +     + +   +     L  L+
Sbjct: 2   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 61

Query: 248 LTNC----WSLQVIAPNVISKLSRLEELYMDNSFSGW 280
           L +       +  +   + +   ++++L + N     
Sbjct: 62  LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTG 98

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (87), Expect = 0.001
 Identities = 19/93 (20%), Positives = 33/93 (35%), Gaps = 14/93 (15%)

Query: 174 ELKVLSLIGIHFSS--LPSSLGRLINLQTLCLDWCQLEDV------AAIGQLKKLEILNL 225
           +++ L +     S       L  L   Q + LD C L +       +A+     L  LNL
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 226 ADSNI-EQLPLEIGQL-----TGLRLLDLTNCW 252
             + + +     + Q        ++ L L NC 
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCC 95

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.9 bits (95), Expect = 3e-05
 Identities = 30/124 (24%), Positives = 51/124 (41%), Gaps = 4/124 (3%)

Query: 176 KVLSLIGIHFSSLPSSLGRLINLQTLCLDWCQLED-VAAIGQLKKLEILNLADSNIEQLP 234
           +VL L     + L   L +L+ +  L L   +L     A+  L+ LE+L  +D+ +E + 
Sbjct: 1   RVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD 59

Query: 235 LEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYM-DNSFSGWEKVEGGSNASLVE 293
             +  L  L+ L L N    Q  A   +    RL  L +  NS    E ++      L  
Sbjct: 60  -GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPS 118

Query: 294 LKRL 297
           +  +
Sbjct: 119 VSSI 122

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 42.3 bits (98), Expect = 4e-05
 Identities = 14/60 (23%), Positives = 22/60 (36%), Gaps = 1/60 (1%)

Query: 168 FFEGTEELKVLSLIGIHFSSLPSSLGRLINLQTLCLDWCQLEDVAAIGQLKKLEILNLAD 227
                 +L  L       S +   L  L NL  + L   Q+ DV+ +     L I+ L +
Sbjct: 168 PLANLSKLTTLKADDNKISDISP-LASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTN 226

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.6 bits (94), Expect = 9e-05
 Identities = 15/90 (16%), Positives = 29/90 (32%), Gaps = 1/90 (1%)

Query: 185 FSSLPSSLGRLINLQTLCLDWCQLEDVAAIGQLKKLEILNLADSNIEQLPLEIGQLTGLR 244
              L   + +  +     LD   L     +       +LN   S    L +    +  L 
Sbjct: 9   VEQLKLIMSKRYDGSQQALDLKGLRSDPDLVAQNIDVVLNRRSSMAATLRIIEENIPELL 68

Query: 245 LLDLTNCW-SLQVIAPNVISKLSRLEELYM 273
            L+L+N          +++ K   L+ L +
Sbjct: 69  SLNLSNNRLYRLDDMSSIVQKAPNLKILNL 98

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.2 bits (95), Expect = 1e-04
 Identities = 12/85 (14%), Positives = 28/85 (32%), Gaps = 4/85 (4%)

Query: 175 LKVLSLIGIHFSSLPSSLGRLINLQTLCLDWCQLEDV---AAIGQLKKLEILNLADSNI- 230
           +              +       +Q + L    +E       + Q  KL+ L+L    + 
Sbjct: 25  VIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLS 84

Query: 231 EQLPLEIGQLTGLRLLDLTNCWSLQ 255
           + +   + + + L  L+L+ C    
Sbjct: 85  DPIVNTLAKNSNLVRLNLSGCSGFS 109

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.2 bits (95), Expect = 1e-04
 Identities = 20/104 (19%), Positives = 40/104 (38%), Gaps = 8/104 (7%)

Query: 199 QTLCLDWCQLEDVAAIGQL--KKLEILNLADSNIEQLPLEIGQLTGLRLLDLTNCWSLQV 256
           QTL L    L      G+L  + +       S ++Q   E      ++ +DL+N      
Sbjct: 3   QTLDLTGKNLHP-DVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVS 61

Query: 257 IAPNVISKLSRLEELYMDNSFSGWEKVEGGSNASLVELKRLTKL 300
               ++S+ S+L+ L +        ++      +L +   L +L
Sbjct: 62  TLHGILSQCSKLQNLSL-----EGLRLSDPIVNTLAKNSNLVRL 100

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Length = 198

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

 Score = 40.4 bits (93), Expect = 1e-04
 Identities = 11/53 (20%), Positives = 26/53 (49%), Gaps = 2/53 (3%)

Query: 174 ELKVLSLIGI--HFSSLPSSLGRLINLQTLCLDWCQLEDVAAIGQLKKLEILN 224
           E + + L G+      + ++L  L   + L L    +E ++++  ++ L IL+
Sbjct: 24  EAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISSLSGMENLRILS 76

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 40.5 bits (93), Expect = 2e-04
 Identities = 10/44 (22%), Positives = 23/44 (52%), Gaps = 1/44 (2%)

Query: 187 SLPSSLGRLINLQTLCLDWCQLE-DVAAIGQLKKLEILNLADSN 229
           +LP  L +L  L +L + +  L  ++   G L++ ++   A++ 
Sbjct: 259 TLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNK 302

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 38.2 bits (87), Expect = 0.001
 Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 2/56 (3%)

Query: 197 NLQTLCLDWCQLEDV--AAIGQLKKLEILNLADSNIEQLPLEIGQLTGLRLLDLTN 250
           NL  L L   ++       + QLK L  LN++ +N+     + G L    +    N
Sbjct: 245 NLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYAN 300

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.0 bits (92), Expect = 2e-04
 Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 1/56 (1%)

Query: 195 LINLQTLCLDWCQLEDVAAIGQLKKLEILNLADSNIEQLPLEIGQLTGLRLLDLTN 250
           L  L TL L+  Q+ D+  +  L KL+ L L+ ++I  L   +  L  L +L+L +
Sbjct: 155 LTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLR-ALAGLKNLDVLELFS 209

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.1 bits (87), Expect = 0.001
 Identities = 13/37 (35%), Positives = 18/37 (48%)

Query: 189 PSSLGRLINLQTLCLDWCQLEDVAAIGQLKKLEILNL 225
              L  L  LQ L L    + D+ A+  LK L++L L
Sbjct: 171 IVPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLEL 207

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 38.1 bits (87), Expect = 0.001
 Identities = 26/133 (19%), Positives = 48/133 (36%), Gaps = 4/133 (3%)

Query: 164 ISDLFFEGTEELKVLSLIGIHFSSL-PSSLGRLINLQTLCLDWCQLEDVAAIGQLKKLEI 222
           I D  F+  + L  L LI    S + P +   L+ L+ L L   QL+++         E+
Sbjct: 46  IKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQEL 105

Query: 223 LNLADSNIEQLPLEIGQLTGLRLLDLTNCW-SLQVIAPNVISKLSRLEELYMDNSFSGWE 281
               +   +        L  + +++L         I       + +L   Y+  + +   
Sbjct: 106 RVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLS--YIRIADTNIT 163

Query: 282 KVEGGSNASLVEL 294
            +  G   SL EL
Sbjct: 164 TIPQGLPPSLTEL 176

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 36.9 bits (84), Expect = 0.003
 Identities = 13/125 (10%), Positives = 34/125 (27%), Gaps = 8/125 (6%)

Query: 130 ISLPQRNIQELPERLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLP 189
           + L    I ++          L  L         + +     T  L+ L L       +P
Sbjct: 176 LHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVP 235

Query: 190 SSLGRLINLQTLCLDWCQLEDV--------AAIGQLKKLEILNLADSNIEQLPLEIGQLT 241
             L     +Q + L    +  +            +      ++L  + ++   ++     
Sbjct: 236 GGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFR 295

Query: 242 GLRLL 246
            + + 
Sbjct: 296 CVYVR 300

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 36.2 bits (82), Expect = 0.004
 Identities = 10/45 (22%), Positives = 21/45 (46%), Gaps = 1/45 (2%)

Query: 202 CLDWCQLEDVAAIGQLKKLEILNLADSNIEQLPLEIGQLTGLRLL 246
                Q+ D+  +  L  LE L+++ + +  +   + +LT L  L
Sbjct: 156 NFSSNQVTDLKPLANLTTLERLDISSNKVSDIS-VLAKLTNLESL 199

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 36.8 bits (83), Expect = 0.004
 Identities = 20/89 (22%), Positives = 35/89 (39%), Gaps = 6/89 (6%)

Query: 175 LKVLSLIGIHFSSLPSSLGRLINLQTLCLDWCQLEDVAA------IGQLKKLEILNLADS 228
           LK+ ++      S+ + L    +++ + L    +   AA      I   K LEI   +D 
Sbjct: 10  LKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDI 69

Query: 229 NIEQLPLEIGQLTGLRLLDLTNCWSLQVI 257
              ++  EI +   L L  L  C  L  +
Sbjct: 70  FTGRVKDEIPEALRLLLQALLKCPKLHTV 98

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	421
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.85
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.85
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.84
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.84
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.8
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.78
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.78
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.77
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.76
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.74
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.71
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.71
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.7
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.69
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.68
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.67
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.63
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.62
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.56
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.54
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.5
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.5
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.48
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.46
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.45
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.41
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.39
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.39
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.27
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.25
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.23
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.14
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.13
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.99
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.91
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.91
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.85
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.85
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.45
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.37
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.08
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.83

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.85  E-value=1.6e-21  Score=176.84  Aligned_cols=246  Identities=14%  Similarity=0.104  Sum_probs=162.6

Q ss_pred             CccEEEeeecCCCCc--ccChHHhccCCCccEEEccC-CCCC-CCChhhhcccCCcEEEcccccCCC--cccccCcCCCC
Q 038338          148 NLQLFLLFRQGYGPV--QISDLFFEGTEELKVLSLIG-IHFS-SLPSSLGRLINLQTLCLDWCQLED--VAAIGQLKKLE  221 (421)
Q Consensus       148 ~L~~L~l~~~~~~~~--~~~~~~~~~l~~L~~L~l~~-~~~~-~lp~~i~~l~~L~~L~l~~~~~~~--~~~~~~l~~L~  221 (421)
                      +++.|+++++.. .+  .+|..+ +++++|++|++++ |.+. .+|++++++.+|++|++++|.+..  +..+..+.+|+
T Consensus        51 ~v~~L~L~~~~l-~g~~~lp~~l-~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~  128 (313)
T d1ogqa_          51 RVNNLDLSGLNL-PKPYPIPSSL-ANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV  128 (313)
T ss_dssp             CEEEEEEECCCC-SSCEECCGGG-GGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred             EEEEEECCCCCC-CCCCCCChHH-hcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhc
Confidence            566777777665 32  456654 6777888888775 5555 477777778888888888777766  56677777788


Q ss_pred             EEEeeCCCCc-ccchhhcCCCCCCEEeccCCcCCcccchhhhcCCCCC-cEEEcccCCCCCccccCCCCcChhhhcCCCC
Q 038338          222 ILNLADSNIE-QLPLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRL-EELYMDNSFSGWEKVEGGSNASLVELKRLTK  299 (421)
Q Consensus       222 ~L~l~~~~l~-~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L-~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~  299 (421)
                      ++++++|.+. .+|..++.+++|+++++++|...+.+|.. +..+..+ +.+.++.|.+....+        ..++.+..
T Consensus       129 ~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~-~~~l~~l~~~l~~~~n~l~~~~~--------~~~~~l~~  199 (313)
T d1ogqa_         129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDS-YGSFSKLFTSMTISRNRLTGKIP--------PTFANLNL  199 (313)
T ss_dssp             EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGG-GGCCCTTCCEEECCSSEEEEECC--------GGGGGCCC
T ss_pred             ccccccccccccCchhhccCcccceeeccccccccccccc-ccccccccccccccccccccccc--------cccccccc
Confidence            8888777555 66777777888888888776666666665 5666654 667777766554433        34444443


Q ss_pred             CCEEEEEecCcc-ccCCcc-cccCCceEEEEEcCCccchhhhhhchhhhceeEEEcCCcccccccchhHHHHhhhcccEE
Q 038338          300 LTTLEIEVRDAE-ILLPDF-VSVELQRYRIRIGDKLEYEIDQLLVKSEALRLMMLKGLEKVSILQENDGTKMLLQRTEDL  377 (421)
Q Consensus       300 L~~L~l~~~~~~-~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L  377 (421)
                      + .+++..+... .+|... ..++++.+++..+ .... .++.++.+++|+.|++++|++  ...+|++++++ ++|++|
T Consensus       200 ~-~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~-~l~~-~~~~~~~~~~L~~L~Ls~N~l--~g~iP~~l~~L-~~L~~L  273 (313)
T d1ogqa_         200 A-FVDLSRNMLEGDASVLFGSDKNTQKIHLAKN-SLAF-DLGKVGLSKNLNGLDLRNNRI--YGTLPQGLTQL-KFLHSL  273 (313)
T ss_dssp             S-EEECCSSEEEECCGGGCCTTSCCSEEECCSS-EECC-BGGGCCCCTTCCEEECCSSCC--EECCCGGGGGC-TTCCEE
T ss_pred             c-ccccccccccccccccccccccccccccccc-cccc-cccccccccccccccCccCee--cccCChHHhCC-CCCCEE
Confidence            3 4665555543 344443 3377777776533 2232 234567778888888888774  33567777777 888888


Q ss_pred             EeccccCcccccccccccCCCCCccEEEEeecCceee
Q 038338          378 WLVKLEGVQNVVHELDDGEGFPRLKHLHVESCYEIVH  414 (421)
Q Consensus       378 ~l~~~~~~~~~~~~~~~~~~~~~L~~L~i~~c~~L~~  414 (421)
                      ++++|...+.+|. .   .++++|+.+.+.+++.+..
T Consensus       274 ~Ls~N~l~g~iP~-~---~~L~~L~~l~l~~N~~l~g  306 (313)
T d1ogqa_         274 NVSFNNLCGEIPQ-G---GNLQRFDVSAYANNKCLCG  306 (313)
T ss_dssp             ECCSSEEEEECCC-S---TTGGGSCGGGTCSSSEEES
T ss_pred             ECcCCcccccCCC-c---ccCCCCCHHHhCCCccccC
Confidence            8888877666664 2   3678888888888876654

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.85  E-value=1e-19  Score=169.58  Aligned_cols=261  Identities=19%  Similarity=0.233  Sum_probs=149.7

Q ss_pred             ccccCccCCCeEEEcCCCCCccCCcccCCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCCCh-------
Q 038338          118 KMEETIRKDPIAISLPQRNIQELPERLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPS-------  190 (421)
Q Consensus       118 ~~~~~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-------  190 (421)
                      +.++..++++++|++++|.+..++...++++|+.|++++|.+  ..++.  ++++++|+.|+++++.+..++.       
T Consensus        59 l~gl~~L~nL~~L~Ls~N~l~~l~~l~~L~~L~~L~L~~n~i--~~i~~--l~~l~~L~~L~~~~~~~~~~~~~~~~~~~  134 (384)
T d2omza2          59 IDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQI--ADITP--LANLTNLTGLTLFNNQITDIDPLKNLTNL  134 (384)
T ss_dssp             CTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCC--CCCGG--GTTCTTCCEEECCSSCCCCCGGGTTCTTC
T ss_pred             ccccccCCCCCEEeCcCCcCCCCccccCCccccccccccccc--ccccc--ccccccccccccccccccccccccccccc
Confidence            345566777888888877777777666777888888877775  33333  4667777777777665443211       


Q ss_pred             ---------------------------------------------------------hhhcccCCcEEEcccccCCCccc
Q 038338          191 ---------------------------------------------------------SLGRLINLQTLCLDWCQLEDVAA  213 (421)
Q Consensus       191 ---------------------------------------------------------~i~~l~~L~~L~l~~~~~~~~~~  213 (421)
                                                                               ....++++++++++++.++....
T Consensus       135 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~l~~n~i~~~~~  214 (384)
T d2omza2         135 NRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITP  214 (384)
T ss_dssp             SEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG
T ss_pred             cccccccccccccccccccccccccccccccchhhhhccccccccccccccccccccccccccccceeeccCCccCCCCc
Confidence                                                                     12223444444444444444222


Q ss_pred             ccCcCCCCEEEeeCCCCcccchhhcCCCCCCEEeccCCcCCcccchhhhcCCCCCcEEEcccCCCCCccccCCCCcChhh
Q 038338          214 IGQLKKLEILNLADSNIEQLPLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNSFSGWEKVEGGSNASLVE  293 (421)
Q Consensus       214 ~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~  293 (421)
                      ....++|++|++++|.++.++ .+..+++|+.+++++|. +..++.  ++.+++|++|+++++.+...          ..
T Consensus       215 ~~~~~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~-l~~~~~--~~~~~~L~~L~l~~~~l~~~----------~~  280 (384)
T d2omza2         215 LGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQ-ISNLAP--LSGLTKLTELKLGANQISNI----------SP  280 (384)
T ss_dssp             GGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSC-CCCCGG--GTTCTTCSEEECCSSCCCCC----------GG
T ss_pred             ccccCCCCEEECCCCCCCCcc-hhhcccccchhccccCc-cCCCCc--ccccccCCEeeccCcccCCC----------Cc
Confidence            344455555555555555543 34555555555555542 333333  45555555555555544332          22


Q ss_pred             hcCCCCCCEEEEEecCccccCCcccccCCceEEEEEcCCccchhhhhhchhhhceeEEEcCCcccccccchhHHHHhhhc
Q 038338          294 LKRLTKLTTLEIEVRDAEILLPDFVSVELQRYRIRIGDKLEYEIDQLLVKSEALRLMMLKGLEKVSILQENDGTKMLLQR  373 (421)
Q Consensus       294 l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~  373 (421)
                      +..++.++.+.+..+.+..++....+++++.|+++.+. ... + ..+..+++|++|++++|.+..    .+.+.++ ++
T Consensus       281 ~~~~~~l~~l~~~~n~l~~~~~~~~~~~l~~L~ls~n~-l~~-l-~~l~~l~~L~~L~L~~n~l~~----l~~l~~l-~~  352 (384)
T d2omza2         281 LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNN-ISD-I-SPVSSLTKLQRLFFANNKVSD----VSSLANL-TN  352 (384)
T ss_dssp             GTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSC-CSC-C-GGGGGCTTCCEEECCSSCCCC----CGGGGGC-TT
T ss_pred             cccccccccccccccccccccccchhcccCeEECCCCC-CCC-C-cccccCCCCCEEECCCCCCCC----ChhHcCC-CC
Confidence            45556666666666665555444455777777776332 232 2 236677778888888766432    2245565 77


Q ss_pred             ccEEEeccccCcccccccccccCCCCCccEEEEeec
Q 038338          374 TEDLWLVKLEGVQNVVHELDDGEGFPRLKHLHVESC  409 (421)
Q Consensus       374 L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~i~~c  409 (421)
                      |++|++++|... .++. +.   ++++|+.|+|+++
T Consensus       353 L~~L~l~~N~l~-~l~~-l~---~l~~L~~L~L~~N  383 (384)
T d2omza2         353 INWLSAGHNQIS-DLTP-LA---NLTRITQLGLNDQ  383 (384)
T ss_dssp             CCEEECCSSCCC-BCGG-GT---TCTTCSEEECCCE
T ss_pred             CCEEECCCCcCC-CChh-hc---cCCCCCEeeCCCC
Confidence            888888777543 3332 33   7778888877764

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.84  E-value=1e-19  Score=169.64  Aligned_cols=264  Identities=19%  Similarity=0.211  Sum_probs=199.1

Q ss_pred             cCccCCCeEEEcCCCCCccCCcccCCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCCChhhhcccCCcE
Q 038338          121 ETIRKDPIAISLPQRNIQELPERLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPSSLGRLINLQT  200 (421)
Q Consensus       121 ~~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~  200 (421)
                      ...+.++++|++.++.+..+.....+++|++|++++|.+  ..++.  ++++++|++|++++|.+..+++ ++.+++|++
T Consensus        40 ~~~l~~l~~L~l~~~~I~~l~gl~~L~nL~~L~Ls~N~l--~~l~~--l~~L~~L~~L~L~~n~i~~i~~-l~~l~~L~~  114 (384)
T d2omza2          40 QTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQL--TDITP--LKNLTKLVDILMNNNQIADITP-LANLTNLTG  114 (384)
T ss_dssp             HHHHTTCCEEECCSSCCCCCTTGGGCTTCCEEECCSSCC--CCCGG--GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCE
T ss_pred             HHHhCCCCEEECCCCCCCCccccccCCCCCEEeCcCCcC--CCCcc--ccCCcccccccccccccccccc-ccccccccc
Confidence            345678999999999998887777999999999999986  55654  5889999999999999988775 899999999


Q ss_pred             EEcccccCCC-c----------------------------------------------------------------cccc
Q 038338          201 LCLDWCQLED-V----------------------------------------------------------------AAIG  215 (421)
Q Consensus       201 L~l~~~~~~~-~----------------------------------------------------------------~~~~  215 (421)
                      |+++++.+.. +                                                                ....
T Consensus       115 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (384)
T d2omza2         115 LTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLA  194 (384)
T ss_dssp             EECCSSCCCCCGGGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGG
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhccccccccccccccccccccccc
Confidence            9998766543 1                                                                1233


Q ss_pred             CcCCCCEEEeeCCCCcccchhhcCCCCCCEEeccCCcCCcccchhhhcCCCCCcEEEcccCCCCCccccCCCCcChhhhc
Q 038338          216 QLKKLEILNLADSNIEQLPLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNSFSGWEKVEGGSNASLVELK  295 (421)
Q Consensus       216 ~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~  295 (421)
                      .+++++.++++++.++.+++ ...+++|++|++++| .+..++.  +..+++|+.|++++|.+...          ..++
T Consensus       195 ~l~~~~~l~l~~n~i~~~~~-~~~~~~L~~L~l~~n-~l~~~~~--l~~l~~L~~L~l~~n~l~~~----------~~~~  260 (384)
T d2omza2         195 KLTNLESLIATNNQISDITP-LGILTNLDELSLNGN-QLKDIGT--LASLTNLTDLDLANNQISNL----------APLS  260 (384)
T ss_dssp             GCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSS-CCCCCGG--GGGCTTCSEEECCSSCCCCC----------GGGT
T ss_pred             cccccceeeccCCccCCCCc-ccccCCCCEEECCCC-CCCCcch--hhcccccchhccccCccCCC----------Cccc
Confidence            45667777777777776643 466778888888875 3445543  67788888888888776654          2377


Q ss_pred             CCCCCCEEEEEecCccccCCcccccCCceEEEEEcCCccchhhhhhchhhhceeEEEcCCcccccccchhHHHHhhhccc
Q 038338          296 RLTKLTTLEIEVRDAEILLPDFVSVELQRYRIRIGDKLEYEIDQLLVKSEALRLMMLKGLEKVSILQENDGTKMLLQRTE  375 (421)
Q Consensus       296 ~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~  375 (421)
                      .+++|++|+++++.+..+++....+.++.+.+..+. ...  ...+..+++++.|++++|.+...    ..+..+ ++|+
T Consensus       261 ~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~~~n~-l~~--~~~~~~~~~l~~L~ls~n~l~~l----~~l~~l-~~L~  332 (384)
T d2omza2         261 GLTKLTELKLGANQISNISPLAGLTALTNLELNENQ-LED--ISPISNLKNLTYLTLYFNNISDI----SPVSSL-TKLQ  332 (384)
T ss_dssp             TCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSC-CSC--CGGGGGCTTCSEEECCSSCCSCC----GGGGGC-TTCC
T ss_pred             ccccCCEeeccCcccCCCCccccccccccccccccc-ccc--ccccchhcccCeEECCCCCCCCC----cccccC-CCCC
Confidence            788888888888888777766566778888775332 221  34478889999999999885432    125566 9999


Q ss_pred             EEEeccccCcccccccccccCCCCCccEEEEeecCceeeecc
Q 038338          376 DLWLVKLEGVQNVVHELDDGEGFPRLKHLHVESCYEIVHIVG  417 (421)
Q Consensus       376 ~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~i~~c~~L~~l~~  417 (421)
                      +|++++|.. +.++ .+.   ++++|++|++++| +++.+++
T Consensus       333 ~L~L~~n~l-~~l~-~l~---~l~~L~~L~l~~N-~l~~l~~  368 (384)
T d2omza2         333 RLFFANNKV-SDVS-SLA---NLTNINWLSAGHN-QISDLTP  368 (384)
T ss_dssp             EEECCSSCC-CCCG-GGG---GCTTCCEEECCSS-CCCBCGG
T ss_pred             EEECCCCCC-CCCh-hHc---CCCCCCEEECCCC-cCCCChh
Confidence            999999964 5555 344   8999999999988 5777653

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.84  E-value=4.1e-21  Score=174.17  Aligned_cols=247  Identities=15%  Similarity=0.164  Sum_probs=198.3

Q ss_pred             CCCeEEEcCCCCCc---cCCccc-CCCCccEEEeee-cCCCCcccChHHhccCCCccEEEccCCCCCC-CChhhhcccCC
Q 038338          125 KDPIAISLPQRNIQ---ELPERL-QCPNLQLFLLFR-QGYGPVQISDLFFEGTEELKVLSLIGIHFSS-LPSSLGRLINL  198 (421)
Q Consensus       125 ~~l~~l~l~~~~~~---~l~~~~-~~~~L~~L~l~~-~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-lp~~i~~l~~L  198 (421)
                      .+++.|+++++.+.   .+|... ++++|+.|++++ |.+ .+.+|..+ +++++|++|++++|.+.. .+..+..+.+|
T Consensus        50 ~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l-~g~iP~~i-~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L  127 (313)
T d1ogqa_          50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNL-VGPIPPAI-AKLTQLHYLYITHTNVSGAIPDFLSQIKTL  127 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTE-ESCCCGGG-GGCTTCSEEEEEEECCEEECCGGGGGCTTC
T ss_pred             EEEEEEECCCCCCCCCCCCChHHhcCcccccccccccccc-cccccccc-ccccccchhhhccccccccccccccchhhh
Confidence            46899999998883   466555 999999999997 666 66888875 889999999999999987 56668889999


Q ss_pred             cEEEcccccCCC--cccccCcCCCCEEEeeCCCCc-ccchhhcCCCCC-CEEeccCCcCCcccchhhhcCCCCCcEEEcc
Q 038338          199 QTLCLDWCQLED--VAAIGQLKKLEILNLADSNIE-QLPLEIGQLTGL-RLLDLTNCWSLQVIAPNVISKLSRLEELYMD  274 (421)
Q Consensus       199 ~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~l~-~lp~~~~~l~~L-~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~  274 (421)
                      ++++++.|.+..  |..++++++|+++++++|.+. .+|..+..+.++ +.+++++|...+..+.. ++.+.. ..+++.
T Consensus       128 ~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~-~~~l~~-~~l~l~  205 (313)
T d1ogqa_         128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPT-FANLNL-AFVDLS  205 (313)
T ss_dssp             CEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGG-GGGCCC-SEEECC
T ss_pred             cccccccccccccCchhhccCcccceeecccccccccccccccccccccccccccccccccccccc-cccccc-cccccc
Confidence            999999998666  899999999999999999988 789999988886 88898887665555554 666654 468887


Q ss_pred             cCCCCCccccCCCCcChhhhcCCCCCCEEEEEecCccccCCcc-cccCCceEEEEEcCCccchhhhhhchhhhceeEEEc
Q 038338          275 NSFSGWEKVEGGSNASLVELKRLTKLTTLEIEVRDAEILLPDF-VSVELQRYRIRIGDKLEYEIDQLLVKSEALRLMMLK  353 (421)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~  353 (421)
                      .+......+        ..++.+++++.+++..+.+...++.+ ..++|+.|+++ .+.+...+|..++++++|++|+++
T Consensus       206 ~~~~~~~~~--------~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~L~~L~Ls-~N~l~g~iP~~l~~L~~L~~L~Ls  276 (313)
T d1ogqa_         206 RNMLEGDAS--------VLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLR-NNRIYGTLPQGLTQLKFLHSLNVS  276 (313)
T ss_dssp             SSEEEECCG--------GGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECC-SSCCEECCCGGGGGCTTCCEEECC
T ss_pred             ccccccccc--------ccccccccccccccccccccccccccccccccccccCc-cCeecccCChHHhCCCCCCEEECc
Confidence            765544433        66788899999999998876545455 45999999997 455666789999999999999999


Q ss_pred             CCcccccccchhHHHHhhhcccEEEeccccCcccc
Q 038338          354 GLEKVSILQENDGTKMLLQRTEDLWLVKLEGVQNV  388 (421)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  388 (421)
                      +|.+.+  .+|. ++++ ++|+.+++.+|+.+...
T Consensus       277 ~N~l~g--~iP~-~~~L-~~L~~l~l~~N~~l~g~  307 (313)
T d1ogqa_         277 FNNLCG--EIPQ-GGNL-QRFDVSAYANNKCLCGS  307 (313)
T ss_dssp             SSEEEE--ECCC-STTG-GGSCGGGTCSSSEEEST
T ss_pred             CCcccc--cCCC-cccC-CCCCHHHhCCCccccCC
Confidence            998543  4454 3555 89999999998865443

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.80  E-value=1e-18  Score=157.52  Aligned_cols=263  Identities=15%  Similarity=0.165  Sum_probs=196.9

Q ss_pred             CCeEEEcCCCCCccCCcccCCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCC-ChhhhcccCCcEEEcc
Q 038338          126 DPIAISLPQRNIQELPERLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSL-PSSLGRLINLQTLCLD  204 (421)
Q Consensus       126 ~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~l~  204 (421)
                      ..+.++-++..+.++|..+ .+++++|++++|.+  ..++...|.++++|++|++++|.+..+ |..+..+.+|++|+++
T Consensus        11 ~~~~~~C~~~~L~~lP~~l-~~~l~~L~Ls~N~i--~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~   87 (305)
T d1xkua_          11 HLRVVQCSDLGLEKVPKDL-PPDTALLDLQNNKI--TEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS   87 (305)
T ss_dssp             ETTEEECTTSCCCSCCCSC-CTTCCEEECCSSCC--CCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             cCCEEEecCCCCCccCCCC-CCCCCEEECcCCcC--CCcChhHhhccccccccccccccccccchhhhhCCCccCEeccc
Confidence            4455666777778888654 36899999999985  777776678899999999999999886 5678999999999999


Q ss_pred             cccCCC-cccccCcCCCCEEEeeCCCCcccchh-hcCCCCCCEEeccCCcCCc-ccchhhhcCCCCCcEEEcccCCCCCc
Q 038338          205 WCQLED-VAAIGQLKKLEILNLADSNIEQLPLE-IGQLTGLRLLDLTNCWSLQ-VIAPNVISKLSRLEELYMDNSFSGWE  281 (421)
Q Consensus       205 ~~~~~~-~~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~  281 (421)
                      +|.++. |..  ....++.|++..+.+..++.. +.....++.+....+.... ......+..+++|+.+++.+|.+...
T Consensus        88 ~n~l~~l~~~--~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l  165 (305)
T d1xkua_          88 KNQLKELPEK--MPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTI  165 (305)
T ss_dssp             SSCCSBCCSS--CCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSC
T ss_pred             CCccCcCccc--hhhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCcccc
Confidence            999888 654  346889999999998887765 5567788888887753322 22223477889999999998876644


Q ss_pred             cccCCCCcChhhhcCCCCCCEEEEEecCccccC-Ccc-cccCCceEEEEEcCCccchhhhhhchhhhceeEEEcCCcccc
Q 038338          282 KVEGGSNASLVELKRLTKLTTLEIEVRDAEILL-PDF-VSVELQRYRIRIGDKLEYEIDQLLVKSEALRLMMLKGLEKVS  359 (421)
Q Consensus       282 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~  359 (421)
                      +.           ...++|++|++.+|.....+ ..+ ..+.++.|.++.+ ......+..+.++++|++|++++|.+. 
T Consensus       166 ~~-----------~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n-~l~~~~~~~~~~l~~L~~L~L~~N~L~-  232 (305)
T d1xkua_         166 PQ-----------GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFN-SISAVDNGSLANTPHLRELHLNNNKLV-  232 (305)
T ss_dssp             CS-----------SCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSS-CCCEECTTTGGGSTTCCEEECCSSCCS-
T ss_pred             Cc-----------ccCCccCEEECCCCcCCCCChhHhhccccccccccccc-cccccccccccccccceeeeccccccc-
Confidence            32           23578999999988875443 333 4588999988743 444455677889999999999998753 


Q ss_pred             cccchhHHHHhhhcccEEEeccccCccccccc-c---cccCCCCCccEEEEeecC
Q 038338          360 ILQENDGTKMLLQRTEDLWLVKLEGVQNVVHE-L---DDGEGFPRLKHLHVESCY  410 (421)
Q Consensus       360 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~---~~~~~~~~L~~L~i~~c~  410 (421)
                        .+|.++..+ ++|++|++++|+ ++.++.. +   ......++|+.|++.++|
T Consensus       233 --~lp~~l~~l-~~L~~L~Ls~N~-i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~  283 (305)
T d1xkua_         233 --KVPGGLADH-KYIQVVYLHNNN-ISAIGSNDFCPPGYNTKKASYSGVSLFSNP  283 (305)
T ss_dssp             --SCCTTTTTC-SSCCEEECCSSC-CCCCCTTSSSCSSCCTTSCCCSEEECCSSS
T ss_pred             --ccccccccc-cCCCEEECCCCc-cCccChhhccCcchhcccCCCCEEECCCCc
Confidence              356678877 999999999986 4555321 1   112367899999999997

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=2e-18  Score=152.34  Aligned_cols=192  Identities=22%  Similarity=0.217  Sum_probs=153.2

Q ss_pred             cCCCeEEEcCCCCCccCCcccCCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCCChhhhcccCCcEEEc
Q 038338          124 RKDPIAISLPQRNIQELPERLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPSSLGRLINLQTLCL  203 (421)
Q Consensus       124 ~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l  203 (421)
                      ......++.+++.+..+|..+. ++++.|++++|.+  ..++...|.++++|++|++++|.++.+|. ++.+++|++|++
T Consensus         9 ~~~~~~v~C~~~~L~~iP~~lp-~~l~~L~Ls~N~i--~~l~~~~f~~l~~L~~L~L~~N~l~~l~~-~~~l~~L~~L~L   84 (266)
T d1p9ag_           9 VASHLEVNCDKRNLTALPPDLP-KDTTILHLSENLL--YTFSLATLMPYTRLTQLNLDRAELTKLQV-DGTLPVLGTLDL   84 (266)
T ss_dssp             STTCCEEECTTSCCSSCCSCCC-TTCCEEECTTSCC--SEEEGGGGTTCTTCCEEECTTSCCCEEEC-CSCCTTCCEEEC
T ss_pred             cCCCeEEEccCCCCCeeCcCcC-cCCCEEECcCCcC--CCcCHHHhhcccccccccccccccccccc-cccccccccccc
Confidence            3455667888888877876442 5789999999985  56776667889999999999999888765 577899999999


Q ss_pred             ccccCCC-cccccCcCCCCEEEeeCCCCcccch-hhcCCCCCCEEeccCCcCCcccchhhhcCCCCCcEEEcccCCCCCc
Q 038338          204 DWCQLED-VAAIGQLKKLEILNLADSNIEQLPL-EIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNSFSGWE  281 (421)
Q Consensus       204 ~~~~~~~-~~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~  281 (421)
                      ++|.+.. +..+.++++|++|+++++.+..++. .+..+.++++|++++| .+..++...+..+++|+.+++++|.+...
T Consensus        85 s~N~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n-~l~~l~~~~~~~l~~l~~l~l~~N~l~~~  163 (266)
T d1p9ag_          85 SHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN-ELKTLPPGLLTPTPKLEKLSLANNNLTEL  163 (266)
T ss_dssp             CSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTSCCSCC
T ss_pred             ccccccccccccccccccccccccccccceeecccccccccccccccccc-ccceeccccccccccchhccccccccccc
Confidence            9999888 8888899999999999998886654 4667889999999885 55677776677889999999999988766


Q ss_pred             cccCCCCcChhhhcCCCCCCEEEEEecCccccCCcc-cccCCceEEEE
Q 038338          282 KVEGGSNASLVELKRLTKLTTLEIEVRDAEILLPDF-VSVELQRYRIR  328 (421)
Q Consensus       282 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~  328 (421)
                      +.        ..++.+++|++|++++|.+..+|..+ ..++|+.|+++
T Consensus       164 ~~--------~~~~~l~~L~~L~Ls~N~L~~lp~~~~~~~~L~~L~L~  203 (266)
T d1p9ag_         164 PA--------GLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLH  203 (266)
T ss_dssp             CT--------TTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECC
T ss_pred             Cc--------cccccccccceeecccCCCcccChhHCCCCCCCEEEec
Confidence            55        55788899999999999988888765 44667777765

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.78  E-value=8.3e-18  Score=151.52  Aligned_cols=251  Identities=16%  Similarity=0.171  Sum_probs=192.9

Q ss_pred             CcccccccCccCCCeEEEcCCCCCccCCcc--cCCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCCChh
Q 038338          114 DLEKKMEETIRKDPIAISLPQRNIQELPER--LQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPSS  191 (421)
Q Consensus       114 ~~~~~~~~~~~~~l~~l~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~  191 (421)
                      .+..+|. ...+++++|++++|.+..++..  .++++|+.|+++++..  ..++...|..+++|++|++++|.++.+|..
T Consensus        21 ~L~~lP~-~l~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~--~~i~~~~f~~l~~L~~L~l~~n~l~~l~~~   97 (305)
T d1xkua_          21 GLEKVPK-DLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKI--SKISPGAFAPLVKLERLYLSKNQLKELPEK   97 (305)
T ss_dssp             CCCSCCC-SCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCC--CCBCTTTTTTCTTCCEEECCSSCCSBCCSS
T ss_pred             CCCccCC-CCCCCCCEEECcCCcCCCcChhHhhccccccccccccccc--cccchhhhhCCCccCEecccCCccCcCccc
Confidence            3444443 3357899999999999988853  3899999999999986  456555568999999999999999998874


Q ss_pred             hhcccCCcEEEcccccCCC--cccccCcCCCCEEEeeCCCCc---ccchhhcCCCCCCEEeccCCcCCcccchhhhcCCC
Q 038338          192 LGRLINLQTLCLDWCQLED--VAAIGQLKKLEILNLADSNIE---QLPLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLS  266 (421)
Q Consensus       192 i~~l~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~l~---~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~  266 (421)
                      +  ...++.|+...+.+..  +..+.....+..++...+...   ..+..+..+++|+++++++|. +..++..   .++
T Consensus        98 ~--~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~-l~~l~~~---~~~  171 (305)
T d1xkua_          98 M--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN-ITTIPQG---LPP  171 (305)
T ss_dssp             C--CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC-CCSCCSS---CCT
T ss_pred             h--hhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCC-ccccCcc---cCC
Confidence            3  4689999999998887  455667788888888887544   334567889999999999864 4556553   478


Q ss_pred             CCcEEEcccCCCCCccccCCCCcChhhhcCCCCCCEEEEEecCccccCCcc--cccCCceEEEEEcCCccchhhhhhchh
Q 038338          267 RLEELYMDNSFSGWEKVEGGSNASLVELKRLTKLTTLEIEVRDAEILLPDF--VSVELQRYRIRIGDKLEYEIDQLLVKS  344 (421)
Q Consensus       267 ~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~l  344 (421)
                      +|++|++++|.......        ..+.+++.++.|.+++|.+..++...  .+++|+.|+++++ .+. .+|..+..+
T Consensus       172 ~L~~L~l~~n~~~~~~~--------~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N-~L~-~lp~~l~~l  241 (305)
T d1xkua_         172 SLTELHLDGNKITKVDA--------ASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNN-KLV-KVPGGLADH  241 (305)
T ss_dssp             TCSEEECTTSCCCEECT--------GGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSS-CCS-SCCTTTTTC
T ss_pred             ccCEEECCCCcCCCCCh--------hHhhccccccccccccccccccccccccccccceeeecccc-ccc-ccccccccc
Confidence            99999999987766544        67888999999999999988776543  4599999999754 444 467789999


Q ss_pred             hhceeEEEcCCccccccc----chhHHHHhhhcccEEEeccccC
Q 038338          345 EALRLMMLKGLEKVSILQ----ENDGTKMLLQRTEDLWLVKLEG  384 (421)
Q Consensus       345 ~~L~~L~l~~~~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~  384 (421)
                      ++|+.|++++|++.....    .+...... ++|+.|++.+|+.
T Consensus       242 ~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~-~~L~~L~L~~N~~  284 (305)
T d1xkua_         242 KYIQVVYLHNNNISAIGSNDFCPPGYNTKK-ASYSGVSLFSNPV  284 (305)
T ss_dssp             SSCCEEECCSSCCCCCCTTSSSCSSCCTTS-CCCSEEECCSSSS
T ss_pred             cCCCEEECCCCccCccChhhccCcchhccc-CCCCEEECCCCcC
Confidence            999999999988643211    11112233 8899999999985

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=1.9e-18  Score=154.10  Aligned_cols=216  Identities=20%  Similarity=0.167  Sum_probs=163.3

Q ss_pred             EEeeecCCCCcccChHHhccCCCccEEEccCCCCCCCCh-hhhcccCCcEEEcccccCCC--cccccCcCCCCEEEeeCC
Q 038338          152 FLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPS-SLGRLINLQTLCLDWCQLED--VAAIGQLKKLEILNLADS  228 (421)
Q Consensus       152 L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~  228 (421)
                      +..+++.  ...+|..+   .+.+++|++++|.++.+|+ .+..+.+|++|+++++.+..  +..+..+..++.+....+
T Consensus        16 v~c~~~~--L~~iP~~i---p~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~   90 (284)
T d1ozna_          16 TSCPQQG--LQAVPVGI---PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN   90 (284)
T ss_dssp             EECCSSC--CSSCCTTC---CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred             EEcCCCC--CCccCCCC---CCCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccc
Confidence            3444444  35677654   3668999999999988775 58889999999999998877  566777888888877644


Q ss_pred             -CCccc-chhhcCCCCCCEEeccCCcCCcccchhhhcCCCCCcEEEcccCCCCCccccCCCCcChhhhcCCCCCCEEEEE
Q 038338          229 -NIEQL-PLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNSFSGWEKVEGGSNASLVELKRLTKLTTLEIE  306 (421)
Q Consensus       229 -~l~~l-p~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~  306 (421)
                       .+..+ |..+.++++|++|++++|.. ..++...++..++|+.+++++|.++..+.        ..+..+++|+.|+++
T Consensus        91 ~~~~~l~~~~~~~l~~L~~L~l~~n~~-~~~~~~~~~~~~~L~~l~l~~N~l~~i~~--------~~f~~~~~L~~L~l~  161 (284)
T d1ozna_          91 AQLRSVDPATFHGLGRLHTLHLDRCGL-QELGPGLFRGLAALQYLYLQDNALQALPD--------DTFRDLGNLTHLFLH  161 (284)
T ss_dssp             TTCCCCCTTTTTTCTTCCEEECTTSCC-CCCCTTTTTTCTTCCEEECCSSCCCCCCT--------TTTTTCTTCCEEECC
T ss_pred             cccccccchhhcccccCCEEecCCccc-ccccccccchhcccchhhhccccccccCh--------hHhccccchhhcccc
Confidence             66666 44578899999999998654 44555447788899999999988876654        557788899999999


Q ss_pred             ecCccccCCcc--cccCCceEEEEEcCCccchhhhhhchhhhceeEEEcCCcccccccchhHHHHhhhcccEEEeccccC
Q 038338          307 VRDAEILLPDF--VSVELQRYRIRIGDKLEYEIDQLLVKSEALRLMMLKGLEKVSILQENDGTKMLLQRTEDLWLVKLEG  384 (421)
Q Consensus       307 ~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  384 (421)
                      +|.+..++...  ..++|+.+.+.. +......|..+..+++|++|++++|.+.  ...+.+++.+ ++|++|++++|+.
T Consensus       162 ~N~l~~l~~~~f~~l~~L~~l~l~~-N~l~~i~~~~f~~l~~L~~L~l~~N~i~--~~~~~~~~~~-~~L~~L~l~~N~l  237 (284)
T d1ozna_         162 GNRISSVPERAFRGLHSLDRLLLHQ-NRVAHVHPHAFRDLGRLMTLYLFANNLS--ALPTEALAPL-RALQYLRLNDNPW  237 (284)
T ss_dssp             SSCCCEECTTTTTTCTTCCEEECCS-SCCCEECTTTTTTCTTCCEEECCSSCCS--CCCHHHHTTC-TTCCEEECCSSCE
T ss_pred             cCcccccchhhhccccccchhhhhh-ccccccChhHhhhhhhcccccccccccc--cccccccccc-cccCEEEecCCCC
Confidence            99988776543  458899998873 4444456788888999999999998843  3345667776 8899999988765


Q ss_pred             c
Q 038338          385 V  385 (421)
Q Consensus       385 ~  385 (421)
                      .
T Consensus       238 ~  238 (284)
T d1ozna_         238 V  238 (284)
T ss_dssp             E
T ss_pred             C
Confidence            4

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=4.8e-18  Score=151.41  Aligned_cols=217  Identities=20%  Similarity=0.224  Sum_probs=133.4

Q ss_pred             EEcCCCCCccCCcccCCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCCC-hhhhcccCCcEEEcccc-c
Q 038338          130 ISLPQRNIQELPERLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLP-SSLGRLINLQTLCLDWC-Q  207 (421)
Q Consensus       130 l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp-~~i~~l~~L~~L~l~~~-~  207 (421)
                      +..++..+.++|..+. +.++.|++++|.+  ..++...|.++++|++|+++++.+..++ ..+..+..++.+....+ .
T Consensus        16 v~c~~~~L~~iP~~ip-~~~~~L~Ls~N~i--~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~   92 (284)
T d1ozna_          16 TSCPQQGLQAVPVGIP-AASQRIFLHGNRI--SHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ   92 (284)
T ss_dssp             EECCSSCCSSCCTTCC-TTCSEEECTTSCC--CEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTT
T ss_pred             EEcCCCCCCccCCCCC-CCCCEEECcCCcC--CCCCHHHhhccccccccccccccccccccccccccccccccccccccc
Confidence            3444444555554332 3566777777664  4555555566777777777777666543 33455666666665433 3


Q ss_pred             CCC--cccccCcCCCCEEEeeCCCCcccch-hhcCCCCCCEEeccCCcCCcccchhhhcCCCCCcEEEcccCCCCCcccc
Q 038338          208 LED--VAAIGQLKKLEILNLADSNIEQLPL-EIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNSFSGWEKVE  284 (421)
Q Consensus       208 ~~~--~~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~  284 (421)
                      +..  +..++++++|++|++++|.+..++. .+...++|+.+++++| .+..++...+..+++|++|++++|.+...+. 
T Consensus        93 ~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N-~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~-  170 (284)
T d1ozna_          93 LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDN-ALQALPDDTFRDLGNLTHLFLHGNRISSVPE-  170 (284)
T ss_dssp             CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCEECT-
T ss_pred             cccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccc-cccccChhHhccccchhhcccccCcccccch-
Confidence            444  5566677777777777776665443 3555667777777764 4455555546666777777777776655443 


Q ss_pred             CCCCcChhhhcCCCCCCEEEEEecCccccC-Ccc-cccCCceEEEEEcCCccchhhhhhchhhhceeEEEcCCcccc
Q 038338          285 GGSNASLVELKRLTKLTTLEIEVRDAEILL-PDF-VSVELQRYRIRIGDKLEYEIDQLLVKSEALRLMMLKGLEKVS  359 (421)
Q Consensus       285 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~  359 (421)
                             ..+.++++|+.+.+..|.+..++ ..+ .+++|+.|+++ .+......+..++.+++|++|++++|.+..
T Consensus       171 -------~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~-~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C  239 (284)
T d1ozna_         171 -------RAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLF-ANNLSALPTEALAPLRALQYLRLNDNPWVC  239 (284)
T ss_dssp             -------TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC-SSCCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred             -------hhhccccccchhhhhhccccccChhHhhhhhhccccccc-ccccccccccccccccccCEEEecCCCCCC
Confidence                   45666777777777777765443 333 33677777775 333443455667888889999999887543

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=9.2e-18  Score=147.98  Aligned_cols=197  Identities=19%  Similarity=0.205  Sum_probs=160.9

Q ss_pred             CCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCCC-hhhhcccCCcEEEcccccCCCcccccCcCCCCEEE
Q 038338          146 CPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLP-SSLGRLINLQTLCLDWCQLEDVAAIGQLKKLEILN  224 (421)
Q Consensus       146 ~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp-~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~  224 (421)
                      ...+...+.+++.+  ..+|..+   .+++++|+|++|.++.+| ..+..+++|++|++++|.++..+.++.+++|++|+
T Consensus         9 ~~~~~~v~C~~~~L--~~iP~~l---p~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~~~~~l~~L~~L~   83 (266)
T d1p9ag_           9 VASHLEVNCDKRNL--TALPPDL---PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLD   83 (266)
T ss_dssp             STTCCEEECTTSCC--SSCCSCC---CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEEE
T ss_pred             cCCCeEEEccCCCC--CeeCcCc---CcCCCEEECcCCcCCCcCHHHhhccccccccccccccccccccccccccccccc
Confidence            34445556666664  5677654   368999999999999876 45889999999999999998855678899999999


Q ss_pred             eeCCCCcccchhhcCCCCCCEEeccCCcCCcccchhhhcCCCCCcEEEcccCCCCCccccCCCCcChhhhcCCCCCCEEE
Q 038338          225 LADSNIEQLPLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNSFSGWEKVEGGSNASLVELKRLTKLTTLE  304 (421)
Q Consensus       225 l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~  304 (421)
                      +++|++...+..+..+++|+.|+++++. ...++...+..+.++++|++.+|.+...+.        ..+..+++++.++
T Consensus        84 Ls~N~l~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~--------~~~~~l~~l~~l~  154 (266)
T d1p9ag_          84 LSHNQLQSLPLLGQTLPALTVLDVSFNR-LTSLPLGALRGLGELQELYLKGNELKTLPP--------GLLTPTPKLEKLS  154 (266)
T ss_dssp             CCSSCCSSCCCCTTTCTTCCEEECCSSC-CCCCCSSTTTTCTTCCEEECTTSCCCCCCT--------TTTTTCTTCCEEE
T ss_pred             cccccccccccccccccccccccccccc-cceeeccccccccccccccccccccceecc--------ccccccccchhcc
Confidence            9999999888889999999999999965 445555557889999999999998876655        5577889999999


Q ss_pred             EEecCccccCCcc--cccCCceEEEEEcCCccchhhhhhchhhhceeEEEcCCccc
Q 038338          305 IEVRDAEILLPDF--VSVELQRYRIRIGDKLEYEIDQLLVKSEALRLMMLKGLEKV  358 (421)
Q Consensus       305 l~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~  358 (421)
                      +++|.+..++...  .+++|+.|+++. +.+. .+|..+..+++|+.|++++|...
T Consensus       155 l~~N~l~~~~~~~~~~l~~L~~L~Ls~-N~L~-~lp~~~~~~~~L~~L~L~~Np~~  208 (266)
T d1p9ag_         155 LANNNLTELPAGLLNGLENLDTLLLQE-NSLY-TIPKGFFGSHLLPFAFLHGNPWL  208 (266)
T ss_dssp             CTTSCCSCCCTTTTTTCTTCCEEECCS-SCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred             cccccccccCccccccccccceeeccc-CCCc-ccChhHCCCCCCCEEEecCCCCC
Confidence            9999998887653  459999999974 4455 67888888999999999998753

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.71  E-value=2.5e-16  Score=133.39  Aligned_cols=166  Identities=23%  Similarity=0.301  Sum_probs=129.5

Q ss_pred             ccCCCeEEEcCCCCCccCCcccCCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCCChhhhcccCCcEEE
Q 038338          123 IRKDPIAISLPQRNIQELPERLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPSSLGRLINLQTLC  202 (421)
Q Consensus       123 ~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~  202 (421)
                      .+.+++++.+.++.+..++....+++|+.|++++|.+  ..++.  ++.+++|++|++++|.++.+|. +..+++|+.|+
T Consensus        44 ~L~~L~~L~l~~~~i~~l~~l~~l~~L~~L~L~~n~i--~~l~~--~~~l~~L~~L~l~~n~i~~l~~-l~~l~~L~~L~  118 (210)
T d1h6ta2          44 ELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKL--TDIKP--LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLS  118 (210)
T ss_dssp             HHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCC--CCCGG--GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEE
T ss_pred             HhcCccEEECcCCCCCCchhHhhCCCCCEEeCCCccc--cCccc--cccCcccccccccccccccccc-ccccccccccc
Confidence            4568888999988887777766888899999988875  44443  3678889999998888888774 78888888898


Q ss_pred             cccccCCCcccccCcCCCCEEEeeCCCCcccchhhcCCCCCCEEeccCCcCCcccchhhhcCCCCCcEEEcccCCCCCcc
Q 038338          203 LDWCQLEDVAAIGQLKKLEILNLADSNIEQLPLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNSFSGWEK  282 (421)
Q Consensus       203 l~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~  282 (421)
                      +++|.+..+..+..+++++.++++++.+...+ .+..+++|+++++++|. +..++.  ++.+++|++|++++|.++.. 
T Consensus       119 l~~~~~~~~~~l~~l~~l~~l~~~~n~l~~~~-~~~~l~~L~~l~l~~n~-l~~i~~--l~~l~~L~~L~Ls~N~i~~l-  193 (210)
T d1h6ta2         119 LEHNGISDINGLVHLPQLESLYLGNNKITDIT-VLSRLTKLDTLSLEDNQ-ISDIVP--LAGLTKLQNLYLSKNHISDL-  193 (210)
T ss_dssp             CTTSCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSC-CCCCGG--GTTCTTCCEEECCSSCCCBC-
T ss_pred             cccccccccccccccccccccccccccccccc-ccccccccccccccccc-cccccc--ccCCCCCCEEECCCCCCCCC-
Confidence            88888777667888888888888888877654 46778888888888864 445554  67888888888888876543 


Q ss_pred             ccCCCCcChhhhcCCCCCCEEEEEe
Q 038338          283 VEGGSNASLVELKRLTKLTTLEIEV  307 (421)
Q Consensus       283 ~~~~~~~~~~~l~~l~~L~~L~l~~  307 (421)
                               ..+..+++|+.|++++
T Consensus       194 ---------~~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         194 ---------RALAGLKNLDVLELFS  209 (210)
T ss_dssp             ---------GGGTTCTTCSEEEEEE
T ss_pred             ---------hhhcCCCCCCEEEccC
Confidence                     3477888888888864

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.71  E-value=3.1e-16  Score=134.60  Aligned_cols=190  Identities=18%  Similarity=0.219  Sum_probs=143.1

Q ss_pred             ccCccCCCeEEEcCCCCCccCCcccCCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCCChhhhcccCCc
Q 038338          120 EETIRKDPIAISLPQRNIQELPERLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPSSLGRLINLQ  199 (421)
Q Consensus       120 ~~~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~  199 (421)
                      ....+.+++.|++.++.+..++....+++|+.|++++|.+  ..+..  +..+++|+++++++|.++.++. +..+++|+
T Consensus        36 ~~~~l~~L~~L~l~~~~i~~l~~l~~l~~L~~L~ls~n~i--~~~~~--l~~l~~l~~l~~~~n~~~~i~~-l~~l~~L~  110 (227)
T d1h6ua2          36 TQADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQI--TDLAP--LKNLTKITELELSGNPLKNVSA-IAGLQSIK  110 (227)
T ss_dssp             CHHHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCC--CCCGG--GTTCCSCCEEECCSCCCSCCGG-GTTCTTCC
T ss_pred             CHHHcCCcCEEECCCCCCCcchhHhcCCCCcEeecCCcee--ecccc--cccccccccccccccccccccc-cccccccc
Confidence            3455678899999999888887766888999999988875  33333  4778888999998888877654 77888889


Q ss_pred             EEEcccccCCCcccccCcCCCCEEEeeCCCCcccchhhcCCCCCCEEeccCCcCCcccchhhhcCCCCCcEEEcccCCCC
Q 038338          200 TLCLDWCQLEDVAAIGQLKKLEILNLADSNIEQLPLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNSFSG  279 (421)
Q Consensus       200 ~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  279 (421)
                      +++++.+.......+...+.++.+.++++.+...+ .+..+++|++|.+++|.. ...+.  ++++++|++|++++|.+.
T Consensus       111 ~l~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~L~~L~l~~n~~-~~~~~--l~~l~~L~~L~Ls~n~l~  186 (227)
T d1h6ua2         111 TLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNIS-PLAGLTNLQYLSIGNAQV-SDLTP--LANLSKLTTLKADDNKIS  186 (227)
T ss_dssp             EEECTTSCCCCCGGGTTCTTCCEEECCSSCCCCCG-GGGGCTTCCEEECCSSCC-CCCGG--GTTCTTCCEEECCSSCCC
T ss_pred             ccccccccccccchhccccchhhhhchhhhhchhh-hhcccccccccccccccc-ccchh--hcccccceecccCCCccC
Confidence            98888887776666777888888888888777553 367788888888888643 33333  678888888888888766


Q ss_pred             CccccCCCCcChhhhcCCCCCCEEEEEecCccccCCcccccCCceEEEE
Q 038338          280 WEKVEGGSNASLVELKRLTKLTTLEIEVRDAEILLPDFVSVELQRYRIR  328 (421)
Q Consensus       280 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~  328 (421)
                      ..          ..++.+++|++|++++|+++.+++.-.+++|+.|+++
T Consensus       187 ~l----------~~l~~l~~L~~L~Ls~N~lt~i~~l~~l~~L~~L~ls  225 (227)
T d1h6ua2         187 DI----------SPLASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLT  225 (227)
T ss_dssp             CC----------GGGGGCTTCCEEECTTSCCCBCGGGTTCTTCCEEEEE
T ss_pred             CC----------hhhcCCCCCCEEECcCCcCCCCcccccCCCCCEEEee
Confidence            43          2367788888888888888777654355777777764

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.70  E-value=3.2e-16  Score=131.60  Aligned_cols=163  Identities=20%  Similarity=0.270  Sum_probs=117.4

Q ss_pred             CccCCCeEEEcCCCCCccCCcccCCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCCChhhhcccCCcEE
Q 038338          122 TIRKDPIAISLPQRNIQELPERLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPSSLGRLINLQTL  201 (421)
Q Consensus       122 ~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L  201 (421)
                      ..+++++.|++.++.+..++....+++|++|++++|.+  ..++.  ++++++|++|++++|.+..++. ++.+++|++|
T Consensus        37 ~~l~~l~~L~l~~~~i~~l~~l~~l~nL~~L~Ls~N~l--~~~~~--l~~l~~L~~L~l~~n~~~~~~~-l~~l~~L~~L  111 (199)
T d2omxa2          37 TDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQL--TDITP--LKNLTKLVDILMNNNQIADITP-LANLTNLTGL  111 (199)
T ss_dssp             HHHTTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCC--CCCGG--GTTCTTCCEEECCSSCCCCCGG-GTTCTTCSEE
T ss_pred             HHhcCCCEEECCCCCCCCccccccCCCcCcCccccccc--cCccc--ccCCcccccccccccccccccc-cccccccccc
Confidence            34567888888888887777666788888888888775  33443  4678888888888887777664 7777888888


Q ss_pred             EcccccCCCcccccCcCCCCEEEeeCCCCcccchhhcCCCCCCEEeccCCcCCcccchhhhcCCCCCcEEEcccCCCCCc
Q 038338          202 CLDWCQLEDVAAIGQLKKLEILNLADSNIEQLPLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNSFSGWE  281 (421)
Q Consensus       202 ~l~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~  281 (421)
                      +++++.......+..+++|+.|++++|++..++ .+..+++|+.|++.+| .+..++.  ++.+++|++|++++|.++..
T Consensus       112 ~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~l~~~~~L~~L~l~~n-~l~~l~~--l~~l~~L~~L~ls~N~i~~i  187 (199)
T d2omxa2         112 TLFNNQITDIDPLKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLNFSSN-QVTDLKP--LANLTTLERLDISSNKVSDI  187 (199)
T ss_dssp             ECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCG-GGTTCTTCSEEECCSS-CCCCCGG--GTTCTTCCEEECCSSCCCCC
T ss_pred             cccccccccccccchhhhhHHhhhhhhhhcccc-cccccccccccccccc-cccCCcc--ccCCCCCCEEECCCCCCCCC
Confidence            888777666556777888888888888777664 4777788888888775 3445554  67778888888887766543


Q ss_pred             cccCCCCcChhhhcCCCCCCEE
Q 038338          282 KVEGGSNASLVELKRLTKLTTL  303 (421)
Q Consensus       282 ~~~~~~~~~~~~l~~l~~L~~L  303 (421)
                                ..++.+++|++|
T Consensus       188 ----------~~l~~L~~L~~L  199 (199)
T d2omxa2         188 ----------SVLAKLTNLESL  199 (199)
T ss_dssp             ----------GGGGGCTTCSEE
T ss_pred             ----------ccccCCCCCCcC
Confidence                      235666777654

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.69  E-value=2.7e-16  Score=132.00  Aligned_cols=162  Identities=20%  Similarity=0.246  Sum_probs=109.0

Q ss_pred             CCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCCChhhhcccCCcEEEcccccCCCcccccCcCCCCEEE
Q 038338          145 QCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPSSLGRLINLQTLCLDWCQLEDVAAIGQLKKLEILN  224 (421)
Q Consensus       145 ~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~  224 (421)
                      .+++++.|+++++.+  ..+..  +..+++|++|++++|.++.+++ ++.+++|++|++++|.+...+.++++++|+.|+
T Consensus        38 ~l~~l~~L~l~~~~i--~~l~~--l~~l~nL~~L~Ls~N~l~~~~~-l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~  112 (199)
T d2omxa2          38 DLDQVTTLQADRLGI--KSIDG--VEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITPLANLTNLTGLT  112 (199)
T ss_dssp             HHTTCCEEECTTSCC--CCCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEE
T ss_pred             HhcCCCEEECCCCCC--CCccc--cccCCCcCcCccccccccCccc-ccCCccccccccccccccccccccccccccccc
Confidence            566777777777764  33432  3567777788887777777654 777777777777777766644577777777777


Q ss_pred             eeCCCCcccchhhcCCCCCCEEeccCCcCCcccchhhhcCCCCCcEEEcccCCCCCccccCCCCcChhhhcCCCCCCEEE
Q 038338          225 LADSNIEQLPLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNSFSGWEKVEGGSNASLVELKRLTKLTTLE  304 (421)
Q Consensus       225 l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~  304 (421)
                      ++++.+..++ .+..+++|+.|++++|. +..++.  +..+++|+.|++.+|.+...          ..++++++|++|+
T Consensus       113 l~~~~~~~~~-~~~~l~~L~~L~l~~n~-l~~~~~--l~~~~~L~~L~l~~n~l~~l----------~~l~~l~~L~~L~  178 (199)
T d2omxa2         113 LFNNQITDID-PLKNLTNLNRLELSSNT-ISDISA--LSGLTSLQQLNFSSNQVTDL----------KPLANLTTLERLD  178 (199)
T ss_dssp             CCSSCCCCCG-GGTTCTTCSEEECCSSC-CCCCGG--GTTCTTCSEEECCSSCCCCC----------GGGTTCTTCCEEE
T ss_pred             cccccccccc-ccchhhhhHHhhhhhhh-hccccc--ccccccccccccccccccCC----------ccccCCCCCCEEE
Confidence            7777666543 46677777777777753 344443  66777777777777766543          2366777777777


Q ss_pred             EEecCccccCCcccccCCceE
Q 038338          305 IEVRDAEILLPDFVSVELQRY  325 (421)
Q Consensus       305 l~~~~~~~~~~~~~~~~L~~L  325 (421)
                      +++|++++++....+++|+.|
T Consensus       179 ls~N~i~~i~~l~~L~~L~~L  199 (199)
T d2omxa2         179 ISSNKVSDISVLAKLTNLESL  199 (199)
T ss_dssp             CCSSCCCCCGGGGGCTTCSEE
T ss_pred             CCCCCCCCCccccCCCCCCcC
Confidence            777777666543344666554

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.68  E-value=4.8e-16  Score=133.44  Aligned_cols=187  Identities=21%  Similarity=0.243  Sum_probs=99.7

Q ss_pred             CCCccEEEccCCCCCCCChhhhcccCCcEEEcccccCCCcccccCcCCCCEEEeeCCCCcccchhhcCCCCCCEEeccCC
Q 038338          172 TEELKVLSLIGIHFSSLPSSLGRLINLQTLCLDWCQLEDVAAIGQLKKLEILNLADSNIEQLPLEIGQLTGLRLLDLTNC  251 (421)
Q Consensus       172 l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~  251 (421)
                      +.+|+.|++.+|.++.++ .+..+++|++|++++|.+.....+.++++|+++++++|.++.++ .+..+++|+.+.+++|
T Consensus        40 l~~L~~L~l~~~~i~~l~-~l~~l~~L~~L~ls~n~i~~~~~l~~l~~l~~l~~~~n~~~~i~-~l~~l~~L~~l~l~~~  117 (227)
T d1h6ua2          40 LDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLTST  117 (227)
T ss_dssp             HHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEECTTS
T ss_pred             cCCcCEEECCCCCCCcch-hHhcCCCCcEeecCCceeeccccccccccccccccccccccccc-cccccccccccccccc
Confidence            455555555555555553 35555555555555555554333555555555555555555443 3445555555555543


Q ss_pred             cCCcccchhhhcCCCCCcEEEcccCCCCCccccCCCCcChhhhcCCCCCCEEEEEecCccccCCcccccCCceEEEEEcC
Q 038338          252 WSLQVIAPNVISKLSRLEELYMDNSFSGWEKVEGGSNASLVELKRLTKLTTLEIEVRDAEILLPDFVSVELQRYRIRIGD  331 (421)
Q Consensus       252 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~  331 (421)
                      ... ..+.  +...+.++.+.++                                .+.+.........++|+.|.+..+.
T Consensus       118 ~~~-~~~~--~~~~~~~~~l~~~--------------------------------~~~~~~~~~~~~~~~L~~L~l~~n~  162 (227)
T d1h6ua2         118 QIT-DVTP--LAGLSNLQVLYLD--------------------------------LNQITNISPLAGLTNLQYLSIGNAQ  162 (227)
T ss_dssp             CCC-CCGG--GTTCTTCCEEECC--------------------------------SSCCCCCGGGGGCTTCCEEECCSSC
T ss_pred             ccc-ccch--hccccchhhhhch--------------------------------hhhhchhhhhccccccccccccccc
Confidence            221 1111  3344444444444                                4443333322233455555553222


Q ss_pred             CccchhhhhhchhhhceeEEEcCCcccccccchhHHHHhhhcccEEEeccccCcccccccccccCCCCCccEEEEee
Q 038338          332 KLEYEIDQLLVKSEALRLMMLKGLEKVSILQENDGTKMLLQRTEDLWLVKLEGVQNVVHELDDGEGFPRLKHLHVES  408 (421)
Q Consensus       332 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~i~~  408 (421)
                      ...   ...++++++|+.|++++|++..   + ..+..+ ++|++|++++|+ ++.++. +   +++++|+.|++++
T Consensus       163 ~~~---~~~l~~l~~L~~L~Ls~n~l~~---l-~~l~~l-~~L~~L~Ls~N~-lt~i~~-l---~~l~~L~~L~lsn  226 (227)
T d1h6ua2         163 VSD---LTPLANLSKLTTLKADDNKISD---I-SPLASL-PNLIEVHLKNNQ-ISDVSP-L---ANTSNLFIVTLTN  226 (227)
T ss_dssp             CCC---CGGGTTCTTCCEEECCSSCCCC---C-GGGGGC-TTCCEEECTTSC-CCBCGG-G---TTCTTCCEEEEEE
T ss_pred             ccc---chhhcccccceecccCCCccCC---C-hhhcCC-CCCCEEECcCCc-CCCCcc-c---ccCCCCCEEEeeC
Confidence            111   1226677888888888876432   2 235566 888888888885 455542 3   3888888888864

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.67  E-value=4.5e-16  Score=131.81  Aligned_cols=165  Identities=22%  Similarity=0.246  Sum_probs=99.5

Q ss_pred             CCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCCChhhhcccCCcEEEcccccCCCcccccCcCCCCEEE
Q 038338          145 QCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPSSLGRLINLQTLCLDWCQLEDVAAIGQLKKLEILN  224 (421)
Q Consensus       145 ~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~  224 (421)
                      .+..++.|+++++.+  ..++.  +..+++|++|++++|.++++++ ++.+++|++|++++|.++..+.+..+++|+.|+
T Consensus        44 ~L~~L~~L~l~~~~i--~~l~~--l~~l~~L~~L~L~~n~i~~l~~-~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~  118 (210)
T d1h6ta2          44 ELNSIDQIIANNSDI--KSVQG--IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLS  118 (210)
T ss_dssp             HHHTCCEEECTTSCC--CCCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGGGGTTCTTCCEEE
T ss_pred             HhcCccEEECcCCCC--CCchh--HhhCCCCCEEeCCCccccCccc-cccCccccccccccccccccccccccccccccc
Confidence            345666666666654  33332  3556777777777776666553 566667777777776666644566667777777


Q ss_pred             eeCCCCcccchhhcCCCCCCEEeccCCcCCcccchhhhcCCCCCcEEEcccCCCCCccccCCCCcChhhhcCCCCCCEEE
Q 038338          225 LADSNIEQLPLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNSFSGWEKVEGGSNASLVELKRLTKLTTLE  304 (421)
Q Consensus       225 l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~  304 (421)
                      +++|.+..++ .+..+++++.+++++|. +...+.  +..+++|+++++++|.+...          ..+.++++|++|+
T Consensus       119 l~~~~~~~~~-~l~~l~~l~~l~~~~n~-l~~~~~--~~~l~~L~~l~l~~n~l~~i----------~~l~~l~~L~~L~  184 (210)
T d1h6ta2         119 LEHNGISDIN-GLVHLPQLESLYLGNNK-ITDITV--LSRLTKLDTLSLEDNQISDI----------VPLAGLTKLQNLY  184 (210)
T ss_dssp             CTTSCCCCCG-GGGGCTTCCEEECCSSC-CCCCGG--GGGCTTCSEEECCSSCCCCC----------GGGTTCTTCCEEE
T ss_pred             cccccccccc-ccccccccccccccccc-cccccc--cccccccccccccccccccc----------ccccCCCCCCEEE
Confidence            7766666553 45666667777766643 333332  45666677777766655433          2256666667777


Q ss_pred             EEecCccccCCcccccCCceEEEE
Q 038338          305 IEVRDAEILLPDFVSVELQRYRIR  328 (421)
Q Consensus       305 l~~~~~~~~~~~~~~~~L~~L~l~  328 (421)
                      +++|.++.++....+++|+.|+++
T Consensus       185 Ls~N~i~~l~~l~~l~~L~~L~Ls  208 (210)
T d1h6ta2         185 LSKNHISDLRALAGLKNLDVLELF  208 (210)
T ss_dssp             CCSSCCCBCGGGTTCTTCSEEEEE
T ss_pred             CCCCCCCCChhhcCCCCCCEEEcc
Confidence            666666655543344666666654

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=1.8e-16  Score=140.73  Aligned_cols=180  Identities=17%  Similarity=0.186  Sum_probs=102.1

Q ss_pred             cCCCccEEEccCCCCCC--CChhhhcccCCcEEEcccccCCC--cccccCcCCCCEEEeeCC-CCc--ccchhhcCCCCC
Q 038338          171 GTEELKVLSLIGIHFSS--LPSSLGRLINLQTLCLDWCQLED--VAAIGQLKKLEILNLADS-NIE--QLPLEIGQLTGL  243 (421)
Q Consensus       171 ~l~~L~~L~l~~~~~~~--lp~~i~~l~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~-~l~--~lp~~~~~l~~L  243 (421)
                      ...+|++|++++|.+..  ++..+..+++|++|++++|.+.+  +..++++++|++|++++| +++  .+..-...+++|
T Consensus        44 ~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L  123 (284)
T d2astb2          44 SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRL  123 (284)
T ss_dssp             CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTC
T ss_pred             cCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhc
Confidence            34567777777776543  44456667777777777777665  566777777777777775 454  222234556777


Q ss_pred             CEEeccCCcCCcc--cchhhhcCCCCCcEEEcccCCCCCccccCCCCcChhhhcCCCCCCEEEEEecC-cc-ccCCcc-c
Q 038338          244 RLLDLTNCWSLQV--IAPNVISKLSRLEELYMDNSFSGWEKVEGGSNASLVELKRLTKLTTLEIEVRD-AE-ILLPDF-V  318 (421)
Q Consensus       244 ~~L~l~~~~~~~~--~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~-~~~~~~-~  318 (421)
                      ++|++++|..+..  +........++|+.|+++++.....     ...+.....++++|++|++++|. ++ .....+ .
T Consensus       124 ~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~-----~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~  198 (284)
T d2astb2         124 DELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQ-----KSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQ  198 (284)
T ss_dssp             CEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSC-----HHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGG
T ss_pred             cccccccccccccccchhhhcccccccchhhhcccccccc-----cccccccccccccccccccccccCCCchhhhhhcc
Confidence            7777777655432  1111112345677777765421100     01112233456777777776554 32 222222 4


Q ss_pred             ccCCceEEEEEcCCccchhhhhhchhhhceeEEEcCC
Q 038338          319 SVELQRYRIRIGDKLEYEIDQLLVKSEALRLMMLKGL  355 (421)
Q Consensus       319 ~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~  355 (421)
                      +++|+.|++..|...+......++.+++|+.|++.+|
T Consensus       199 ~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         199 LNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             CTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             cCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            4667777766555555444455666667777777664

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.62  E-value=2.2e-14  Score=131.19  Aligned_cols=261  Identities=19%  Similarity=0.138  Sum_probs=145.3

Q ss_pred             CCeEEEcCCCCCccCCcccCCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCCChhhhcccCCcEEEccc
Q 038338          126 DPIAISLPQRNIQELPERLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPSSLGRLINLQTLCLDW  205 (421)
Q Consensus       126 ~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~  205 (421)
                      ++++|+++++.+..+|+.  .++|++|++++|.+  ..+|..    +.+|+.|++++|.++.++..   ...|++|++++
T Consensus        39 ~l~~LdLs~~~L~~lp~~--~~~L~~L~Ls~N~l--~~lp~~----~~~L~~L~l~~n~l~~l~~l---p~~L~~L~L~~  107 (353)
T d1jl5a_          39 QAHELELNNLGLSSLPEL--PPHLESLVASCNSL--TELPEL----PQSLKSLLVDNNNLKALSDL---PPLLEYLGVSN  107 (353)
T ss_dssp             TCSEEECTTSCCSCCCSC--CTTCSEEECCSSCC--SSCCCC----CTTCCEEECCSSCCSCCCSC---CTTCCEEECCS
T ss_pred             CCCEEEeCCCCCCCCCCC--CCCCCEEECCCCCC--cccccc----hhhhhhhhhhhcccchhhhh---ccccccccccc
Confidence            566777777777777653  46777777777764  455532    45677777777776655431   13477777777


Q ss_pred             ccCCCcccccCcCCCCEEEeeCCCCcccchhhcCCCCCCEEeccCCcCCcccchhhhcCCCCCcEEEcccCCCCCccccC
Q 038338          206 CQLEDVAAIGQLKKLEILNLADSNIEQLPLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNSFSGWEKVEG  285 (421)
Q Consensus       206 ~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~  285 (421)
                      |.+...+.++.+++|++|+++++.+...+..   ...+..+.+.++... ... . ++.++.++.+.+.++.........
T Consensus       108 n~l~~lp~~~~l~~L~~L~l~~~~~~~~~~~---~~~l~~l~~~~~~~~-~~~-~-l~~l~~l~~L~l~~n~~~~~~~~~  181 (353)
T d1jl5a_         108 NQLEKLPELQNSSFLKIIDVDNNSLKKLPDL---PPSLEFIAAGNNQLE-ELP-E-LQNLPFLTAIYADNNSLKKLPDLP  181 (353)
T ss_dssp             SCCSSCCCCTTCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCS-SCC-C-CTTCTTCCEEECCSSCCSSCCCCC
T ss_pred             cccccccchhhhccceeeccccccccccccc---cccccchhhcccccc-ccc-c-ccccccceeccccccccccccccc
Confidence            7777633456777777777777766655432   234444544443221 111 1 445556666665554433221110


Q ss_pred             ----------CCCcChhhhcCCCCCCEEEEEecCccccCCcc------------------cccCCceEEEEEcC------
Q 038338          286 ----------GSNASLVELKRLTKLTTLEIEVRDAEILLPDF------------------VSVELQRYRIRIGD------  331 (421)
Q Consensus       286 ----------~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~------------------~~~~L~~L~l~~~~------  331 (421)
                                ...........++.|+.+.++.+....++...                  ....+....+....      
T Consensus       182 ~~~~~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~  261 (353)
T d1jl5a_         182 LSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSE  261 (353)
T ss_dssp             TTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCSCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSEESC
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence                      00111223445566666666655443332211                  00112222211000      


Q ss_pred             ---------CccchhhhhhchhhhceeEEEcCCcccccccchhHHHHhhhcccEEEeccccCcccccccccccCCCCCcc
Q 038338          332 ---------KLEYEIDQLLVKSEALRLMMLKGLEKVSILQENDGTKMLLQRTEDLWLVKLEGVQNVVHELDDGEGFPRLK  402 (421)
Q Consensus       332 ---------~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~  402 (421)
                               .....+......+++|++|++++|.+.   .+|.+    +++|++|++++|.. +.++.      .+++|+
T Consensus       262 l~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~---~lp~~----~~~L~~L~L~~N~L-~~l~~------~~~~L~  327 (353)
T d1jl5a_         262 LPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI---ELPAL----PPRLERLIASFNHL-AEVPE------LPQNLK  327 (353)
T ss_dssp             CCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCS---CCCCC----CTTCCEEECCSSCC-SCCCC------CCTTCC
T ss_pred             ccchhcccccccCccccccccCCCCCEEECCCCccC---ccccc----cCCCCEEECCCCcC-Ccccc------ccCCCC
Confidence                     000011112234589999999998753   23432    48999999998864 56654      457899


Q ss_pred             EEEEeecCceeeeccc
Q 038338          403 HLHVESCYEIVHIVGS  418 (421)
Q Consensus       403 ~L~i~~c~~L~~l~~~  418 (421)
                      .|++++|+ |+++++.
T Consensus       328 ~L~L~~N~-L~~lp~~  342 (353)
T d1jl5a_         328 QLHVEYNP-LREFPDI  342 (353)
T ss_dssp             EEECCSSC-CSSCCCC
T ss_pred             EEECcCCc-CCCCCcc
Confidence            99999996 9888643

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=7.4e-16  Score=136.79  Aligned_cols=247  Identities=16%  Similarity=0.131  Sum_probs=159.4

Q ss_pred             cEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCCChhhhcccCCcEEEcccccCCC---cccccCcCCCCEEEee
Q 038338          150 QLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPSSLGRLINLQTLCLDWCQLED---VAAIGQLKKLEILNLA  226 (421)
Q Consensus       150 ~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~---~~~~~~l~~L~~L~l~  226 (421)
                      +.++++++.+ .......+..  .....+.++................|++|++++|.+..   ...+.++++|++|+++
T Consensus         3 ~~lDLs~~~l-~~~~l~~l~~--~~~~~lrl~~~~~~~~~~~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~   79 (284)
T d2astb2           3 QTLDLTGKNL-HPDVTGRLLS--QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLE   79 (284)
T ss_dssp             SEEECTTCBC-CHHHHHHHHH--TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECT
T ss_pred             CEEECCCCCC-CchHHHHHHh--ccceEeeccccccccchhhhccCCCCCEEECCCCccCHHHHHHHHHhCCCccccccc
Confidence            4667776654 3333333332  23456666655444333334456689999999988765   3557788999999999


Q ss_pred             CCCCc-ccchhhcCCCCCCEEeccCCcCCcccch-hhhcCCCCCcEEEcccCC-CCCccccCCCCcChhhhcC-CCCCCE
Q 038338          227 DSNIE-QLPLEIGQLTGLRLLDLTNCWSLQVIAP-NVISKLSRLEELYMDNSF-SGWEKVEGGSNASLVELKR-LTKLTT  302 (421)
Q Consensus       227 ~~~l~-~lp~~~~~l~~L~~L~l~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~~~l~~-l~~L~~  302 (421)
                      +|.+. ..+..+..+++|++|++++|..++...- ..+..+++|++|++++|. ++...       ....+.. .++|+.
T Consensus        80 ~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~-------~~~~~~~~~~~L~~  152 (284)
T d2astb2          80 GLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKH-------VQVAVAHVSETITQ  152 (284)
T ss_dssp             TCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHH-------HHHHHHHSCTTCCE
T ss_pred             ccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhcccccccccccccccc-------chhhhcccccccch
Confidence            99877 5566788899999999999876654321 224578999999998863 22211       1123333 468999


Q ss_pred             EEEEecC--cc--ccCCcc-cccCCceEEEEEcCCccchhhhhhchhhhceeEEEcCCcccccccchhHHHHhhhcccEE
Q 038338          303 LEIEVRD--AE--ILLPDF-VSVELQRYRIRIGDKLEYEIDQLLVKSEALRLMMLKGLEKVSILQENDGTKMLLQRTEDL  377 (421)
Q Consensus       303 L~l~~~~--~~--~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L  377 (421)
                      |+++++.  +.  .+.... .+++|+.|+++.+...+...+..+..+++|++|++++|.. ........++++ |+|++|
T Consensus       153 L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~-i~~~~l~~L~~~-~~L~~L  230 (284)
T d2astb2         153 LNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYD-IIPETLLELGEI-PTLKTL  230 (284)
T ss_dssp             EECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTT-CCGGGGGGGGGC-TTCCEE
T ss_pred             hhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCC-CChHHHHHHhcC-CCCCEE
Confidence            9987653  22  222222 4588999999766666666777788899999999999752 222333446666 899999


Q ss_pred             EeccccCcccccccccccCCCCCccEEEEeecCceeee
Q 038338          378 WLVKLEGVQNVVHELDDGEGFPRLKHLHVESCYEIVHI  415 (421)
Q Consensus       378 ~l~~~~~~~~~~~~~~~~~~~~~L~~L~i~~c~~L~~l  415 (421)
                      ++.+|-....+.. +  .+++|+|+.    +|..+..+
T Consensus       231 ~l~~~~~d~~l~~-l--~~~lp~L~i----~~~~ls~~  261 (284)
T d2astb2         231 QVFGIVPDGTLQL-L--KEALPHLQI----NCSHFTTI  261 (284)
T ss_dssp             ECTTSSCTTCHHH-H--HHHSTTSEE----SCCCSCCT
T ss_pred             eeeCCCCHHHHHH-H--HHhCccccc----cCccCCCC
Confidence            9988832222222 1  236777763    56666554

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=3.5e-14  Score=122.86  Aligned_cols=220  Identities=15%  Similarity=0.126  Sum_probs=92.7

Q ss_pred             EEEccCCCCCCCChhhhcccCCcEEEcccccCCC-c-ccccCcCCCCEEEeeCCCCcc-cch-hhcCCCCCCEEeccCCc
Q 038338          177 VLSLIGIHFSSLPSSLGRLINLQTLCLDWCQLED-V-AAIGQLKKLEILNLADSNIEQ-LPL-EIGQLTGLRLLDLTNCW  252 (421)
Q Consensus       177 ~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~-~-~~~~~l~~L~~L~l~~~~l~~-lp~-~~~~l~~L~~L~l~~~~  252 (421)
                      +++.++..++.+|..+.  .++++|++++|.++. + ..+.++++|++|++++|.+.. ++. .+..+++++++.+..++
T Consensus        12 ~i~c~~~~l~~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n   89 (242)
T d1xwdc1          12 VFLCQESKVTEIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN   89 (242)
T ss_dssp             EEEEESCSCSSCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCT
T ss_pred             EEEEeCCCCCCcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccccc
Confidence            44444444444444332  244555555555444 2 234455555555555554432 222 24445555555544444


Q ss_pred             CCcccchhhhcCCCCCcEEEcccCCCCCccccCCCCcChhhhcCCCCCCEEEEEecCccccCCcc--cc-cCCceEEEEE
Q 038338          253 SLQVIAPNVISKLSRLEELYMDNSFSGWEKVEGGSNASLVELKRLTKLTTLEIEVRDAEILLPDF--VS-VELQRYRIRI  329 (421)
Q Consensus       253 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~~-~~L~~L~l~~  329 (421)
                      .+...+...+..+++|++++++++.+.....       ...+..++.+..+....+.+..++...  .. ..++.+.+. 
T Consensus        90 ~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~-------~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~-  161 (242)
T d1xwdc1          90 NLLYINPEAFQNLPNLQYLLISNTGIKHLPD-------VHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLN-  161 (242)
T ss_dssp             TCCEECTTSEECCTTCCEEEEESCCCCSCCC-------CTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECC-
T ss_pred             cccccccccccccccccccccchhhhccccc-------ccccccccccccccccccccccccccccccccccceeeecc-
Confidence            4444444434555555555555554433211       011222222222222222333333221  11 344444443 


Q ss_pred             cCCccchhhhhhchhhhceeEE-EcCCcccccccchh-HHHHhhhcccEEEeccccCcccccccccccCCCCCccEEEEe
Q 038338          330 GDKLEYEIDQLLVKSEALRLMM-LKGLEKVSILQEND-GTKMLLQRTEDLWLVKLEGVQNVVHELDDGEGFPRLKHLHVE  407 (421)
Q Consensus       330 ~~~~~~~~~~~~~~l~~L~~L~-l~~~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~i~  407 (421)
                      ++... .++......++++.+. +.+|.+   ..++. .+.++ ++|++|++++|+. +.++.     ..|.+|..|..-
T Consensus       162 ~n~l~-~i~~~~~~~~~l~~~~~l~~n~l---~~l~~~~f~~l-~~L~~L~Ls~N~l-~~l~~-----~~~~~l~~L~~l  230 (242)
T d1xwdc1         162 KNGIQ-EIHNCAFNGTQLDELNLSDNNNL---EELPNDVFHGA-SGPVILDISRTRI-HSLPS-----YGLENLKKLRAR  230 (242)
T ss_dssp             SSCCC-EECTTTTTTCCEEEEECTTCTTC---CCCCTTTTTTS-CCCSEEECTTSCC-CCCCS-----SSCTTCCEEESS
T ss_pred             ccccc-ccccccccchhhhcccccccccc---ccccHHHhcCC-CCCCEEECCCCcC-CccCH-----HHHcCCcccccC
Confidence            22222 2222233344444443 333332   12332 23444 7777777777664 34432     134444444444


Q ss_pred             ecCceeeecc
Q 038338          408 SCYEIVHIVG  417 (421)
Q Consensus       408 ~c~~L~~l~~  417 (421)
                      ++++++.+++
T Consensus       231 ~~~~l~~lp~  240 (242)
T d1xwdc1         231 STYNLKKLPT  240 (242)
T ss_dssp             SEESSSCSCC
T ss_pred             cCCCCCcCCC
Confidence            4455555543

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.50  E-value=9.6e-14  Score=106.25  Aligned_cols=101  Identities=27%  Similarity=0.309  Sum_probs=57.3

Q ss_pred             cEEEccCCCCCCCChhhhcccCCcEEEcccccCCC-cccccCcCCCCEEEeeCCCCcccchhhcCCCCCCEEeccCCcCC
Q 038338          176 KVLSLIGIHFSSLPSSLGRLINLQTLCLDWCQLED-VAAIGQLKKLEILNLADSNIEQLPLEIGQLTGLRLLDLTNCWSL  254 (421)
Q Consensus       176 ~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~-~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~  254 (421)
                      |+|++++|.++.++. ++.+.+|++|++++|.++. |+.++.+++|++|++++|.++.+| ++..+++|++|++++| .+
T Consensus         1 R~L~Ls~n~l~~l~~-l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~i~~l~-~~~~l~~L~~L~l~~N-~i   77 (124)
T d1dcea3           1 RVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNN-RL   77 (124)
T ss_dssp             SEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSS-CC
T ss_pred             CEEEcCCCCCCCCcc-cccCCCCCEEECCCCccCcchhhhhhhhcccccccccccccccC-ccccccccCeEECCCC-cc
Confidence            456666666665543 5666666666666666655 555666666666666666666554 3556666666666664 22


Q ss_pred             cccch-hhhcCCCCCcEEEcccCCCC
Q 038338          255 QVIAP-NVISKLSRLEELYMDNSFSG  279 (421)
Q Consensus       255 ~~~~~-~~l~~l~~L~~L~l~~~~~~  279 (421)
                      ..++. ..++.+++|+.|++++|.+.
T Consensus        78 ~~~~~~~~l~~~~~L~~L~l~~N~i~  103 (124)
T d1dcea3          78 QQSAAIQPLVSCPRLVLLNLQGNSLC  103 (124)
T ss_dssp             CSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred             CCCCCchhhcCCCCCCEEECCCCcCC
Confidence            33321 22455666666666655443

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=8e-14  Score=120.52  Aligned_cols=201  Identities=11%  Similarity=0.065  Sum_probs=87.7

Q ss_pred             CccEEEccCCCCCCCCh-hhhcccCCcEEEcccccCCC---cccccCcCCCCEEEeeCC-CCcccc-hhhcCCCCCCEEe
Q 038338          174 ELKVLSLIGIHFSSLPS-SLGRLINLQTLCLDWCQLED---VAAIGQLKKLEILNLADS-NIEQLP-LEIGQLTGLRLLD  247 (421)
Q Consensus       174 ~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~---~~~~~~l~~L~~L~l~~~-~l~~lp-~~~~~l~~L~~L~  247 (421)
                      ++++|++++|.++.+|. .+..+++|++|++++|.+..   +..+.++++++++.+..+ ++...+ ..+..+++|++++
T Consensus        30 ~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~  109 (242)
T d1xwdc1          30 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLL  109 (242)
T ss_dssp             CCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEEE
T ss_pred             CCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccccccccccccccccccccccccc
Confidence            44555555555544433 24445555555555554433   233444555555554432 333332 2244555555555


Q ss_pred             ccCCcCCcccch-hhhcCCCCCcEEEcccCCCCCccccCCCCcChhhhcCC-CCCCEEEEEecCccccCCcc-cccCCce
Q 038338          248 LTNCWSLQVIAP-NVISKLSRLEELYMDNSFSGWEKVEGGSNASLVELKRL-TKLTTLEIEVRDAEILLPDF-VSVELQR  324 (421)
Q Consensus       248 l~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~~~~~~-~~~~L~~  324 (421)
                      ++++.. ...+. ..+..++.+..+...++.+.....        ..+..+ ..++.|.+..|.+..++... ..+++..
T Consensus       110 l~~~~l-~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~--------~~~~~~~~~l~~L~l~~n~l~~i~~~~~~~~~l~~  180 (242)
T d1xwdc1         110 ISNTGI-KHLPDVHKIHSLQKVLLDIQDNINIHTIER--------NSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDE  180 (242)
T ss_dssp             EESCCC-CSCCCCTTTCBSSCEEEEEESCTTCCEECT--------TSSTTSBSSCEEEECCSSCCCEECTTTTTTCCEEE
T ss_pred             cchhhh-cccccccccccccccccccccccccccccc--------cccccccccceeeecccccccccccccccchhhhc
Confidence            555322 22221 111122222222222222222211        112222 24555566555555554443 2234444


Q ss_pred             EEEEEcCCccchhhhhhchhhhceeEEEcCCcccccccchhHHHHhhhcccEEEeccccCccccc
Q 038338          325 YRIRIGDKLEYEIDQLLVKSEALRLMMLKGLEKVSILQENDGTKMLLQRTEDLWLVKLEGVQNVV  389 (421)
Q Consensus       325 L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  389 (421)
                      +....++......+..+.++++|+.|++++|.+..   +|.+   .|.+|..|...++..++.+|
T Consensus       181 ~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~---l~~~---~~~~l~~L~~l~~~~l~~lp  239 (242)
T d1xwdc1         181 LNLSDNNNLEELPNDVFHGASGPVILDISRTRIHS---LPSY---GLENLKKLRARSTYNLKKLP  239 (242)
T ss_dssp             EECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCC---CCSS---SCTTCCEEESSSEESSSCSC
T ss_pred             cccccccccccccHHHhcCCCCCCEEECCCCcCCc---cCHH---HHcCCcccccCcCCCCCcCC
Confidence            33322233332112346778889999998877532   2221   13455555554444444443

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.48  E-value=1.7e-13  Score=104.79  Aligned_cols=118  Identities=21%  Similarity=0.242  Sum_probs=82.4

Q ss_pred             cEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCCChhhhcccCCcEEEcccccCCCcccccCcCCCCEEEeeCCC
Q 038338          150 QLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPSSLGRLINLQTLCLDWCQLEDVAAIGQLKKLEILNLADSN  229 (421)
Q Consensus       150 ~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~  229 (421)
                      |+|++++|.+  ..++.  +..+++|++|++++|.++.+|+.++.+++|++|++++|.++..++++++++|++|++++|+
T Consensus         1 R~L~Ls~n~l--~~l~~--l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~i~~l~~~~~l~~L~~L~l~~N~   76 (124)
T d1dcea3           1 RVLHLAHKDL--TVLCH--LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNR   76 (124)
T ss_dssp             SEEECTTSCC--SSCCC--GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSC
T ss_pred             CEEEcCCCCC--CCCcc--cccCCCCCEEECCCCccCcchhhhhhhhcccccccccccccccCccccccccCeEECCCCc
Confidence            4677777765  34443  3677888888888888888877788888888888888888775567888888888888888


Q ss_pred             Ccccc--hhhcCCCCCCEEeccCCcCCc--ccchhhhcCCCCCcEE
Q 038338          230 IEQLP--LEIGQLTGLRLLDLTNCWSLQ--VIAPNVISKLSRLEEL  271 (421)
Q Consensus       230 l~~lp--~~~~~l~~L~~L~l~~~~~~~--~~~~~~l~~l~~L~~L  271 (421)
                      +..+|  ..+..+++|++|++++|....  ..+......+++|+.+
T Consensus        77 i~~~~~~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          77 LQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             CCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             cCCCCCchhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence            87665  356778888888888764321  2233334445666554

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=8.9e-14  Score=111.86  Aligned_cols=107  Identities=17%  Similarity=0.171  Sum_probs=56.6

Q ss_pred             cCCCccEEEccCCCCCCCChhhhcccCCcEEEcccccCCCcccccCcCCCCEEEeeCCCCcccchhh-cCCCCCCEEecc
Q 038338          171 GTEELKVLSLIGIHFSSLPSSLGRLINLQTLCLDWCQLEDVAAIGQLKKLEILNLADSNIEQLPLEI-GQLTGLRLLDLT  249 (421)
Q Consensus       171 ~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~-~~l~~L~~L~l~  249 (421)
                      +..++|.|++++|.++.++.....+.+|++|++++|.++..+.+..+++|++|++++|+++.+|.++ ..+++|++|+++
T Consensus        16 n~~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~~l~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L~   95 (162)
T d1a9na_          16 NAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILT   95 (162)
T ss_dssp             CTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECC
T ss_pred             CcCcCcEEECCCCCCCccCccccccccCCEEECCCCCCCccCCcccCcchhhhhcccccccCCCccccccccccccceec
Confidence            4455566666666655555444455556666666665555334555566666666666655555442 345556666665


Q ss_pred             CCcCCcccch-hhhcCCCCCcEEEcccCCC
Q 038338          250 NCWSLQVIAP-NVISKLSRLEELYMDNSFS  278 (421)
Q Consensus       250 ~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~  278 (421)
                      +|. +..++. ..+..+++|++|++++|.+
T Consensus        96 ~N~-i~~~~~l~~l~~l~~L~~L~l~~N~i  124 (162)
T d1a9na_          96 NNS-LVELGDLDPLASLKSLTYLCILRNPV  124 (162)
T ss_dssp             SCC-CCCGGGGGGGGGCTTCCEEECCSSGG
T ss_pred             ccc-ccccccccccccccccchhhcCCCcc
Confidence            542 222221 1244555555555555543

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.45  E-value=7.6e-12  Score=113.86  Aligned_cols=249  Identities=17%  Similarity=0.152  Sum_probs=143.5

Q ss_pred             ccCCCeEEEcCCCCCccCCcccCCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCCChhhhcccCCcEEE
Q 038338          123 IRKDPIAISLPQRNIQELPERLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPSSLGRLINLQTLC  202 (421)
Q Consensus       123 ~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~  202 (421)
                      .++++++|++++|.+..+|..  ..+|+.|++.+|..  ..++. +   .+.|++|++++|.+..+|. ++.+.+|++|+
T Consensus        56 ~~~~L~~L~Ls~N~l~~lp~~--~~~L~~L~l~~n~l--~~l~~-l---p~~L~~L~L~~n~l~~lp~-~~~l~~L~~L~  126 (353)
T d1jl5a_          56 LPPHLESLVASCNSLTELPEL--PQSLKSLLVDNNNL--KALSD-L---PPLLEYLGVSNNQLEKLPE-LQNSSFLKIID  126 (353)
T ss_dssp             CCTTCSEEECCSSCCSSCCCC--CTTCCEEECCSSCC--SCCCS-C---CTTCCEEECCSSCCSSCCC-CTTCTTCCEEE
T ss_pred             CCCCCCEEECCCCCCcccccc--hhhhhhhhhhhccc--chhhh-h---ccccccccccccccccccc-hhhhccceeec
Confidence            357899999999999888864  46899999998875  44432 1   3569999999999988886 67889999999


Q ss_pred             cccccCCC-cc-------------------cccCcCCCCEEEeeCCCCcccchhhcCCCCCCEEeccCCcCCcccchhhh
Q 038338          203 LDWCQLED-VA-------------------AIGQLKKLEILNLADSNIEQLPLEIGQLTGLRLLDLTNCWSLQVIAPNVI  262 (421)
Q Consensus       203 l~~~~~~~-~~-------------------~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l  262 (421)
                      ++++.+.. +.                   .+..++.++.|++.++.....+...   ...+.+...+ ......+.  .
T Consensus       127 l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~l~~l~~L~l~~n~~~~~~~~~---~~~~~l~~~~-~~~~~~~~--~  200 (353)
T d1jl5a_         127 VDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLP---LSLESIVAGN-NILEELPE--L  200 (353)
T ss_dssp             CCSSCCSCCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCCCC---TTCCEEECCS-SCCSSCCC--C
T ss_pred             cccccccccccccccccchhhccccccccccccccccceeccccccccccccccc---cccccccccc-cccccccc--c
Confidence            98887654 32                   2334455566666555444332211   1112222222 12222222  3


Q ss_pred             cCCCCCcEEEcccCCCCCccccCC--------CCcChhhhcCCCCCCEEEEEec--------------------CccccC
Q 038338          263 SKLSRLEELYMDNSFSGWEKVEGG--------SNASLVELKRLTKLTTLEIEVR--------------------DAEILL  314 (421)
Q Consensus       263 ~~l~~L~~L~l~~~~~~~~~~~~~--------~~~~~~~l~~l~~L~~L~l~~~--------------------~~~~~~  314 (421)
                      ..++.|+.+++++|..........        .............+....+..+                    .+..++
T Consensus       201 ~~l~~L~~l~l~~n~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~  280 (353)
T d1jl5a_         201 QNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLC  280 (353)
T ss_dssp             TTCTTCCEEECCSSCCSSCCSCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEEC
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhcccccccCcccccc
Confidence            455666666666554333221100        0000000011122222222222                    222221


Q ss_pred             CcccccCCceEEEEEcCCccchhhhhhchhhhceeEEEcCCcccccccchhHHHHhhhcccEEEeccccCcccccccccc
Q 038338          315 PDFVSVELQRYRIRIGDKLEYEIDQLLVKSEALRLMMLKGLEKVSILQENDGTKMLLQRTEDLWLVKLEGVQNVVHELDD  394 (421)
Q Consensus       315 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~  394 (421)
                      .  .+++|+.|+++.+ .+. .+|.   .+++|+.|++++|.+..   +|.    ..++|++|++++|+ ++.+|..   
T Consensus       281 ~--~~~~L~~L~Ls~N-~l~-~lp~---~~~~L~~L~L~~N~L~~---l~~----~~~~L~~L~L~~N~-L~~lp~~---  342 (353)
T d1jl5a_         281 D--LPPSLEELNVSNN-KLI-ELPA---LPPRLERLIASFNHLAE---VPE----LPQNLKQLHVEYNP-LREFPDI---  342 (353)
T ss_dssp             C--CCTTCCEEECCSS-CCS-CCCC---CCTTCCEEECCSSCCSC---CCC----CCTTCCEEECCSSC-CSSCCCC---
T ss_pred             c--cCCCCCEEECCCC-ccC-cccc---ccCCCCEEECCCCcCCc---ccc----ccCCCCEEECcCCc-CCCCCcc---
Confidence            1  2478999999744 333 3443   46899999999988642   332    23789999999998 6777752   


Q ss_pred             cCCCCCccEEEEe
Q 038338          395 GEGFPRLKHLHVE  407 (421)
Q Consensus       395 ~~~~~~L~~L~i~  407 (421)
                         .++|+.|.+.
T Consensus       343 ---~~~L~~L~~~  352 (353)
T d1jl5a_         343 ---PESVEDLRMN  352 (353)
T ss_dssp             ---CTTCCEEECC
T ss_pred             ---ccccCeeECc
Confidence               2467777654

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=4e-13  Score=107.98  Aligned_cols=107  Identities=14%  Similarity=0.094  Sum_probs=49.8

Q ss_pred             cCCCeEEEcCCCCCccCCccc-CCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCCChh-hhcccCCcEE
Q 038338          124 RKDPIAISLPQRNIQELPERL-QCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPSS-LGRLINLQTL  201 (421)
Q Consensus       124 ~~~l~~l~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~-i~~l~~L~~L  201 (421)
                      +.+++.|++++|.+..++... .+++|+.|++++|.+  ..++.  +..+++|++|++++|.++.+|.. +..+++|++|
T Consensus        17 ~~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i--~~l~~--~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L   92 (162)
T d1a9na_          17 AVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEI--RKLDG--FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL   92 (162)
T ss_dssp             TTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCC--CEECC--CCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred             cCcCcEEECCCCCCCccCccccccccCCEEECCCCCC--CccCC--cccCcchhhhhcccccccCCCccccccccccccc
Confidence            344555555555555554332 445555555555543  22322  24445555555555555444332 2334555555


Q ss_pred             EcccccCCC-c--ccccCcCCCCEEEeeCCCCcccc
Q 038338          202 CLDWCQLED-V--AAIGQLKKLEILNLADSNIEQLP  234 (421)
Q Consensus       202 ~l~~~~~~~-~--~~~~~l~~L~~L~l~~~~l~~lp  234 (421)
                      ++++|.+.. +  ..+..+++|++|++++|.+...|
T Consensus        93 ~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~  128 (162)
T d1a9na_          93 ILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKK  128 (162)
T ss_dssp             ECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGST
T ss_pred             eeccccccccccccccccccccchhhcCCCcccccc
Confidence            555554443 1  23444445555555554444433

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.39  E-value=1.1e-12  Score=108.97  Aligned_cols=121  Identities=21%  Similarity=0.269  Sum_probs=74.4

Q ss_pred             EEEcCCCCCccCCcccCCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCC-ChhhhcccCCcEEEccccc
Q 038338          129 AISLPQRNIQELPERLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSL-PSSLGRLINLQTLCLDWCQ  207 (421)
Q Consensus       129 ~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~~~  207 (421)
                      .++.+++.+.++|..+. ++++.|++++|.+ ...++...|.++++|+.|++++|.+..+ +..+..+.+|++|++++|.
T Consensus        12 ~v~Cs~~~L~~iP~~lp-~~l~~L~Ls~N~i-~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~   89 (192)
T d1w8aa_          12 TVDCTGRGLKEIPRDIP-LHTTELLLNDNEL-GRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK   89 (192)
T ss_dssp             EEECTTSCCSSCCSCCC-TTCSEEECCSCCC-CSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred             EEEEeCCCcCccCCCCC-CCCCEEEeCCCCC-cccccccccCCCceEeeeeccccccccccccccccccccceeeecccc
Confidence            46666666666665332 4666777777665 3344444456666777777766666553 3445566666666666666


Q ss_pred             CCC--cccccCcCCCCEEEeeCCCCcccchh-hcCCCCCCEEeccCC
Q 038338          208 LED--VAAIGQLKKLEILNLADSNIEQLPLE-IGQLTGLRLLDLTNC  251 (421)
Q Consensus       208 ~~~--~~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~  251 (421)
                      +..  +..|.++++|++|++++|+++.+|++ +..+++|++|++++|
T Consensus        90 l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N  136 (192)
T d1w8aa_          90 IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN  136 (192)
T ss_dssp             CCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTC
T ss_pred             ccccCHHHHhCCCcccccccCCccccccCHHHhcCCccccccccccc
Confidence            666  34566666666666666666666544 455666666666664

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.39  E-value=7.2e-13  Score=110.01  Aligned_cols=123  Identities=16%  Similarity=0.229  Sum_probs=60.3

Q ss_pred             EEEccCCCCCCCChhhhcccCCcEEEcccccCCC---cccccCcCCCCEEEeeCCCCcccch-hhcCCCCCCEEeccCCc
Q 038338          177 VLSLIGIHFSSLPSSLGRLINLQTLCLDWCQLED---VAAIGQLKKLEILNLADSNIEQLPL-EIGQLTGLRLLDLTNCW  252 (421)
Q Consensus       177 ~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~---~~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~  252 (421)
                      +++.++++++.+|..+.  .++++|++++|.++.   +..+.++++|+.|++++|.+..++. .+..+++|++|++++| 
T Consensus        12 ~v~Cs~~~L~~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N-   88 (192)
T d1w8aa_          12 TVDCTGRGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN-   88 (192)
T ss_dssp             EEECTTSCCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC-
T ss_pred             EEEEeCCCcCccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccc-
Confidence            44455555555554432  345555555555532   2344555555555555555553332 3444555555555553 


Q ss_pred             CCcccchhhhcCCCCCcEEEcccCCCCCccccCCCCcChhhhcCCCCCCEEEEEecCc
Q 038338          253 SLQVIAPNVISKLSRLEELYMDNSFSGWEKVEGGSNASLVELKRLTKLTTLEIEVRDA  310 (421)
Q Consensus       253 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  310 (421)
                      .+..++++.|.++++|++|++++|.+...++        ..+..+++|++|++++|.+
T Consensus        89 ~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~--------~~f~~l~~L~~l~L~~N~~  138 (192)
T d1w8aa_          89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMP--------GSFEHLNSLTSLNLASNPF  138 (192)
T ss_dssp             CCCEECSSSSTTCTTCCEEECCSSCCCEECT--------TSSTTCTTCCEEECTTCCB
T ss_pred             cccccCHHHHhCCCcccccccCCccccccCH--------HHhcCCccccccccccccc
Confidence            3344444444555555555555555544433        3344455555555555444

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.27  E-value=7.7e-14  Score=116.28  Aligned_cols=115  Identities=22%  Similarity=0.242  Sum_probs=62.6

Q ss_pred             CCCChhhhcccCCcEEEcccccCCCcccccCcCCCCEEEeeCCCCcccchhhcCCCCCCEEeccCCcCCcccchhhhcCC
Q 038338          186 SSLPSSLGRLINLQTLCLDWCQLEDVAAIGQLKKLEILNLADSNIEQLPLEIGQLTGLRLLDLTNCWSLQVIAPNVISKL  265 (421)
Q Consensus       186 ~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l  265 (421)
                      ..++.++..+.+|++|++++|.++..+.+..+++|++|++++|.++.+|.....+++|++|++++| .+..++.  +..+
T Consensus        38 ~~l~~sl~~L~~L~~L~Ls~n~I~~i~~l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~~N-~i~~l~~--~~~l  114 (198)
T d1m9la_          38 EKMDATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYN-QIASLSG--IEKL  114 (198)
T ss_dssp             CCCHHHHHHTTTCCEEECSEEEESCCCCHHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEECSEE-ECCCHHH--HHHH
T ss_pred             hhhhhHHhcccccceeECcccCCCCcccccCCccccChhhcccccccccccccccccccccccccc-ccccccc--cccc
Confidence            344555555666666666666555533455566666666666655555544444455666666554 3334432  4555


Q ss_pred             CCCcEEEcccCCCCCccccCCCCcChhhhcCCCCCCEEEEEecCc
Q 038338          266 SRLEELYMDNSFSGWEKVEGGSNASLVELKRLTKLTTLEIEVRDA  310 (421)
Q Consensus       266 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  310 (421)
                      ++|+.|++++|.+.....       +..++.+++|+.|++++|.+
T Consensus       115 ~~L~~L~L~~N~i~~~~~-------~~~l~~l~~L~~L~L~~N~l  152 (198)
T d1m9la_         115 VNLRVLYMSNNKITNWGE-------IDKLAALDKLEDLLLAGNPL  152 (198)
T ss_dssp             HHSSEEEESEEECCCHHH-------HHHHTTTTTCSEEEECSSHH
T ss_pred             ccccccccccchhccccc-------cccccCCCccceeecCCCcc
Confidence            666666666655543321       13455666666666666654

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=5.6e-13  Score=126.01  Aligned_cols=105  Identities=19%  Similarity=0.208  Sum_probs=75.7

Q ss_pred             CCeEEEcCCCCCcc--CCccc-CCCCccEEEeeecCCCCccc---ChHHhccCCCccEEEccCCCCCC-----CChhhhc
Q 038338          126 DPIAISLPQRNIQE--LPERL-QCPNLQLFLLFRQGYGPVQI---SDLFFEGTEELKVLSLIGIHFSS-----LPSSLGR  194 (421)
Q Consensus       126 ~l~~l~l~~~~~~~--l~~~~-~~~~L~~L~l~~~~~~~~~~---~~~~~~~l~~L~~L~l~~~~~~~-----lp~~i~~  194 (421)
                      +++.|+++.+.+..  +.... .++++++|++.+|.+ ...-   ....+..+++|++|++++|.++.     +...+..
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i-~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~   81 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGL-TEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   81 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCC-CHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCC-CHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhc
Confidence            57889999998833  22322 778999999999986 3211   12234778999999999998853     2222222


Q ss_pred             -ccCCcEEEcccccCCC------cccccCcCCCCEEEeeCCCCc
Q 038338          195 -LINLQTLCLDWCQLED------VAAIGQLKKLEILNLADSNIE  231 (421)
Q Consensus       195 -l~~L~~L~l~~~~~~~------~~~~~~l~~L~~L~l~~~~l~  231 (421)
                       ..+|++|++++|.+++      +..+..+++|++|++++|.+.
T Consensus        82 ~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~  125 (460)
T d1z7xw1          82 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLG  125 (460)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCH
T ss_pred             CCCCCCEEECCCCCccccccccccchhhccccccccccccccch
Confidence             3479999999999875      246778899999999988764

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.23  E-value=2.4e-13  Score=113.21  Aligned_cols=103  Identities=20%  Similarity=0.252  Sum_probs=61.2

Q ss_pred             CCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCCChhhhcccCCcEEEcccccCCCcccccCcCCCCEEE
Q 038338          145 QCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPSSLGRLINLQTLCLDWCQLEDVAAIGQLKKLEILN  224 (421)
Q Consensus       145 ~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~  224 (421)
                      .+++|+.|++++|.+  ..++.  +..+++|++|++++|.++.+|.....+.+|++|++++|.++..+.+..+++|++|+
T Consensus        46 ~L~~L~~L~Ls~n~I--~~i~~--l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~~N~i~~l~~~~~l~~L~~L~  121 (198)
T d1m9la_          46 TLKACKHLALSTNNI--EKISS--LSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLY  121 (198)
T ss_dssp             HTTTCCEEECSEEEE--SCCCC--HHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEECSEEECCCHHHHHHHHHSSEEE
T ss_pred             cccccceeECcccCC--CCccc--ccCCccccChhhcccccccccccccccccccccccccccccccccccccccccccc
Confidence            566666666666654  33432  35566666666666666666554444556666666666666544456666666666


Q ss_pred             eeCCCCcccc--hhhcCCCCCCEEeccCC
Q 038338          225 LADSNIEQLP--LEIGQLTGLRLLDLTNC  251 (421)
Q Consensus       225 l~~~~l~~lp--~~~~~l~~L~~L~l~~~  251 (421)
                      +++|+++.++  ..+..+++|++|++++|
T Consensus       122 L~~N~i~~~~~~~~l~~l~~L~~L~L~~N  150 (198)
T d1m9la_         122 MSNNKITNWGEIDKLAALDKLEDLLLAGN  150 (198)
T ss_dssp             ESEEECCCHHHHHHHTTTTTCSEEEECSS
T ss_pred             cccchhccccccccccCCCccceeecCCC
Confidence            6666666554  23556666666666664

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.14  E-value=2.6e-11  Score=110.18  Aligned_cols=232  Identities=16%  Similarity=0.112  Sum_probs=129.3

Q ss_pred             cCccCCCeEEEcCCCCCcc-----CCc-ccCCCCccEEEeeecCCC--CcccC------hHHhccCCCccEEEccCCCCC
Q 038338          121 ETIRKDPIAISLPQRNIQE-----LPE-RLQCPNLQLFLLFRQGYG--PVQIS------DLFFEGTEELKVLSLIGIHFS  186 (421)
Q Consensus       121 ~~~~~~l~~l~l~~~~~~~-----l~~-~~~~~~L~~L~l~~~~~~--~~~~~------~~~~~~l~~L~~L~l~~~~~~  186 (421)
                      .....+++.|++++|.++.     +.. ....++++.+.+.++...  ....+      ...+...++|+.|++++|.+.
T Consensus        27 L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~  106 (344)
T d2ca6a1          27 LLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFG  106 (344)
T ss_dssp             HHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCC
T ss_pred             HhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccccccc
Confidence            3445677888888876621     222 226678888888766431  01111      122345677888888888765


Q ss_pred             C-----CChhhhcccCCcEEEcccccCCC--ccc-------------ccCcCCCCEEEeeCCCCc-----ccchhhcCCC
Q 038338          187 S-----LPSSLGRLINLQTLCLDWCQLED--VAA-------------IGQLKKLEILNLADSNIE-----QLPLEIGQLT  241 (421)
Q Consensus       187 ~-----lp~~i~~l~~L~~L~l~~~~~~~--~~~-------------~~~l~~L~~L~l~~~~l~-----~lp~~~~~l~  241 (421)
                      .     +...+...++|+.|++++|.+..  ...             ....+.|+.++++++.+.     .+...+...+
T Consensus       107 ~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~  186 (344)
T d2ca6a1         107 PTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHR  186 (344)
T ss_dssp             TTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCT
T ss_pred             cccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccchhhhhh
Confidence            4     34445567788888888776543  111             124567778888777665     3334455677


Q ss_pred             CCCEEeccCCcCCcc----cchhhhcCCCCCcEEEcccCCCCCccccCCCCcChhhhcCCCCCCEEEEEecCccc-----
Q 038338          242 GLRLLDLTNCWSLQV----IAPNVISKLSRLEELYMDNSFSGWEKVEGGSNASLVELKRLTKLTTLEIEVRDAEI-----  312 (421)
Q Consensus       242 ~L~~L~l~~~~~~~~----~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-----  312 (421)
                      +|++|++++|.....    .....+...++|+.|++++|.++....    .++...+..+++|++|++++|.++.     
T Consensus       187 ~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~----~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~  262 (344)
T d2ca6a1         187 LLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGS----SALAIALKSWPNLRELGLNDCLLSARGAAA  262 (344)
T ss_dssp             TCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHH----HHHHHHGGGCTTCCEEECTTCCCCHHHHHH
T ss_pred             hhcccccccccccccccccchhhhhcchhhhccccccccccccccc----ccccccccccccchhhhhhcCccCchhhHH
Confidence            788888877643221    111225567777888877776543211    1233556677777777777776542     


Q ss_pred             cCCcc---cccCCceEEEEEcCCccch----hhhhhc-hhhhceeEEEcCCcc
Q 038338          313 LLPDF---VSVELQRYRIRIGDKLEYE----IDQLLV-KSEALRLMMLKGLEK  357 (421)
Q Consensus       313 ~~~~~---~~~~L~~L~l~~~~~~~~~----~~~~~~-~l~~L~~L~l~~~~~  357 (421)
                      +...+   ..+.|+.|+++.+. ....    +...+. ++++|+.|++++|.+
T Consensus       263 l~~~l~~~~~~~L~~L~ls~N~-i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~  314 (344)
T d2ca6a1         263 VVDAFSKLENIGLQTLRLQYNE-IELDAVRTLKTVIDEKMPDLLFLELNGNRF  314 (344)
T ss_dssp             HHHHHHTCSSCCCCEEECCSSC-CBHHHHHHHHHHHHHHCTTCCEEECTTSBS
T ss_pred             HHHHhhhccCCCCCEEECCCCc-CChHHHHHHHHHHHccCCCCCEEECCCCcC
Confidence            11111   12456666665332 2211    122232 345666666666554

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.13  E-value=2.9e-11  Score=109.90  Aligned_cols=71  Identities=21%  Similarity=0.064  Sum_probs=30.0

Q ss_pred             hhhchhhhceeEEEcCCccccccc--chhHHHHh-hhcccEEEeccccCcccccccccc--cCCCCCccEEEEeec
Q 038338          339 QLLVKSEALRLMMLKGLEKVSILQ--ENDGTKML-LQRTEDLWLVKLEGVQNVVHELDD--GEGFPRLKHLHVESC  409 (421)
Q Consensus       339 ~~~~~l~~L~~L~l~~~~~~~~~~--~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~--~~~~~~L~~L~i~~c  409 (421)
                      ..+..+++|++|++++|.+....-  +-..+... .+.|++|++++|.........+..  ..++++|++|+++++
T Consensus       237 ~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N  312 (344)
T d2ca6a1         237 IALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGN  312 (344)
T ss_dssp             HHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTS
T ss_pred             ccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCC
Confidence            334555666666666655321110  11111111 134666666665532211111110  113556666666554

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.99  E-value=5.9e-11  Score=111.77  Aligned_cols=188  Identities=17%  Similarity=0.041  Sum_probs=103.0

Q ss_pred             cCCCCEEEeeCCCCc------ccchhhcCCCCCCEEeccCCcCCcccch---hhhcCCCCCcEEEcccCCCCCccccCCC
Q 038338          217 LKKLEILNLADSNIE------QLPLEIGQLTGLRLLDLTNCWSLQVIAP---NVISKLSRLEELYMDNSFSGWEKVEGGS  287 (421)
Q Consensus       217 l~~L~~L~l~~~~l~------~lp~~~~~l~~L~~L~l~~~~~~~~~~~---~~l~~l~~L~~L~l~~~~~~~~~~~~~~  287 (421)
                      .+.++.+++.++.+.      ..+........++.+++++|........   ..+...+.++.+++++|.++....    
T Consensus       225 ~~~~~~l~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~----  300 (460)
T d1z7xw1         225 KASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGA----  300 (460)
T ss_dssp             CTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHH----
T ss_pred             cccccccchhhccccccccchhhccccccccccccccccccccccccccccccccccccccccccccccccccccc----
Confidence            456667776666543      1122234567888999988754322111   124567888899988887653221    


Q ss_pred             CcChhhhc-CCCCCCEEEEEecCccccC-----Ccc-cccCCceEEEEEcCCccch----hhhhhc-hhhhceeEEEcCC
Q 038338          288 NASLVELK-RLTKLTTLEIEVRDAEILL-----PDF-VSVELQRYRIRIGDKLEYE----IDQLLV-KSEALRLMMLKGL  355 (421)
Q Consensus       288 ~~~~~~l~-~l~~L~~L~l~~~~~~~~~-----~~~-~~~~L~~L~l~~~~~~~~~----~~~~~~-~l~~L~~L~l~~~  355 (421)
                      ..+...+. ....|+.+.++.+.+....     ... ..++|+.|+++.+ .....    ++..+. ..+.|+.|++++|
T Consensus       301 ~~l~~~l~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N-~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n  379 (460)
T d1z7xw1         301 RLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNN-RLEDAGVRELCQGLGQPGSVLRVLWLADC  379 (460)
T ss_dssp             HHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred             chhhccccccccccccccccccchhhhhhhhcccccccccchhhhheeee-cccCcccchhhhhhhcccCCCCEEECCCC
Confidence            01112222 3457888888877764221     111 2367888888643 33322    222332 3466888888888


Q ss_pred             ccccc--ccchhHHHHhhhcccEEEeccccCccccccccc-c-cCCCCCccEEEEeecC
Q 038338          356 EKVSI--LQENDGTKMLLQRTEDLWLVKLEGVQNVVHELD-D-GEGFPRLKHLHVESCY  410 (421)
Q Consensus       356 ~~~~~--~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~-~~~~~~L~~L~i~~c~  410 (421)
                      .+...  ..+.+.+... ++|++|++++|+........+. . ..+-.+|+.|.+.++.
T Consensus       380 ~i~~~~~~~l~~~l~~~-~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~  437 (460)
T d1z7xw1         380 DVSDSSCSSLAATLLAN-HSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIY  437 (460)
T ss_dssp             CCCHHHHHHHHHHHHHC-CCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCC
T ss_pred             CCChHHHHHHHHHHhcC-CCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCC
Confidence            75322  1123334444 7888888888865432221110 0 1133468888887764

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.91  E-value=2.7e-09  Score=84.45  Aligned_cols=58  Identities=26%  Similarity=0.157  Sum_probs=21.6

Q ss_pred             hcccCCcEEEcccccCCC--cccccCcCCCCEEEeeCCCCcccchhhcCCCCCCEEeccC
Q 038338          193 GRLINLQTLCLDWCQLED--VAAIGQLKKLEILNLADSNIEQLPLEIGQLTGLRLLDLTN  250 (421)
Q Consensus       193 ~~l~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~  250 (421)
                      ..+.+|+.|++++|.++.  +..+..+++|++|++++|+++.+|.++....+|++|++++
T Consensus        53 ~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~~~l~~L~L~~  112 (156)
T d2ifga3          53 RGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSG  112 (156)
T ss_dssp             CSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCCCCEEECCS
T ss_pred             ccccccCcceeeccccCCcccccccccccccceeccCCCCcccChhhhccccccccccCC
Confidence            333333333333333333  2233333334444444443333333332222333333333

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.91  E-value=3.5e-09  Score=83.78  Aligned_cols=105  Identities=17%  Similarity=0.142  Sum_probs=85.0

Q ss_pred             CCeEEEcCCCCCccCCccc-CCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCC-ChhhhcccCCcEEEc
Q 038338          126 DPIAISLPQRNIQELPERL-QCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSL-PSSLGRLINLQTLCL  203 (421)
Q Consensus       126 ~l~~l~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~l  203 (421)
                      ....++..++....+|... .+++++.|.+.++.. ...++...|.++++|+.|++++|.++.+ |..+..+++|++|++
T Consensus         9 ~~~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~-l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L   87 (156)
T d2ifga3           9 GSSGLRCTRDGALDSLHHLPGAENLTELYIENQQH-LQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNL   87 (156)
T ss_dssp             SSSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSS-CCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEEC
T ss_pred             CCCeEEecCCCCccCcccccCccccCeeecCCCcc-ccccCchhhccccccCcceeeccccCCcccccccccccccceec
Confidence            3445677777765555444 788999999987754 5778777789999999999999999987 456889999999999


Q ss_pred             ccccCCC-cccccCcCCCCEEEeeCCCCc
Q 038338          204 DWCQLED-VAAIGQLKKLEILNLADSNIE  231 (421)
Q Consensus       204 ~~~~~~~-~~~~~~l~~L~~L~l~~~~l~  231 (421)
                      ++|.++. |..+....+|+.|++++|.+.
T Consensus        88 s~N~l~~l~~~~~~~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          88 SFNALESLSWKTVQGLSLQELVLSGNPLH  116 (156)
T ss_dssp             CSSCCSCCCSTTTCSCCCCEEECCSSCCC
T ss_pred             cCCCCcccChhhhccccccccccCCCccc
Confidence            9999998 666656668999999999875

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.85  E-value=1.1e-06  Score=69.61  Aligned_cols=63  Identities=27%  Similarity=0.170  Sum_probs=38.2

Q ss_pred             hccCCCccEEEccCCCCCCCC---hhhhcccCCcEEEcccccCCCcc--cccCcCCCCEEEeeCCCCc
Q 038338          169 FEGTEELKVLSLIGIHFSSLP---SSLGRLINLQTLCLDWCQLEDVA--AIGQLKKLEILNLADSNIE  231 (421)
Q Consensus       169 ~~~l~~L~~L~l~~~~~~~lp---~~i~~l~~L~~L~l~~~~~~~~~--~~~~l~~L~~L~l~~~~l~  231 (421)
                      +..++.|++|++++|.++.++   ..+..+++|++|++++|.+++.+  ......+|+.|++++|.+.
T Consensus        61 ~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~  128 (162)
T d1koha1          61 EENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLS  128 (162)
T ss_dssp             HHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTS
T ss_pred             HHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcC
Confidence            355777777777777776542   33556677777777777766621  1222345666666666655

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.85  E-value=5.1e-07  Score=71.49  Aligned_cols=81  Identities=17%  Similarity=0.114  Sum_probs=45.6

Q ss_pred             hhcccCCcEEEcccccCCC----cccccCcCCCCEEEeeCCCCcccch-hhcCCCCCCEEeccCCcCCcccch------h
Q 038338          192 LGRLINLQTLCLDWCQLED----VAAIGQLKKLEILNLADSNIEQLPL-EIGQLTGLRLLDLTNCWSLQVIAP------N  260 (421)
Q Consensus       192 i~~l~~L~~L~l~~~~~~~----~~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~------~  260 (421)
                      ...+++|++|++++|.++.    +..+..+++|+.|++++|.++.++. ......+|++|++++|........      .
T Consensus        61 ~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~  140 (162)
T d1koha1          61 EENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISA  140 (162)
T ss_dssp             HHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHH
T ss_pred             HHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHH
Confidence            3456677777777777665    1334556777777777777766554 122344566666666544322211      1


Q ss_pred             hhcCCCCCcEEE
Q 038338          261 VISKLSRLEELY  272 (421)
Q Consensus       261 ~l~~l~~L~~L~  272 (421)
                      .+..+++|+.||
T Consensus       141 i~~~~P~L~~LD  152 (162)
T d1koha1         141 IRERFPKLLRLD  152 (162)
T ss_dssp             HHTTSTTCCEET
T ss_pred             HHHHCCCCCEEC
Confidence            244566666665

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.45  E-value=0.0001  Score=58.03  Aligned_cols=59  Identities=14%  Similarity=0.129  Sum_probs=25.1

Q ss_pred             hhcccCCcEEEcccccCCC--c----ccccCcCCCCEEEeeCCCCc-----ccchhhcCCCCCCEEeccC
Q 038338          192 LGRLINLQTLCLDWCQLED--V----AAIGQLKKLEILNLADSNIE-----QLPLEIGQLTGLRLLDLTN  250 (421)
Q Consensus       192 i~~l~~L~~L~l~~~~~~~--~----~~~~~l~~L~~L~l~~~~l~-----~lp~~~~~l~~L~~L~l~~  250 (421)
                      +....+|++|++++|.+..  .    ..+...+.|++|++++|.+.     .+-..+...++|++|++++
T Consensus        40 L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~  109 (167)
T d1pgva_          40 ACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADN  109 (167)
T ss_dssp             HTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCC
T ss_pred             HhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCC
Confidence            3334445555555544432  1    22223344555555555444     1222333444455555544

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.37  E-value=0.00012  Score=57.50  Aligned_cols=105  Identities=10%  Similarity=0.015  Sum_probs=70.5

Q ss_pred             CCCCccEEEeeecC-CCCcccC---hHHhccCCCccEEEccCCCCCC-----CChhhhcccCCcEEEcccccCCC--c--
Q 038338          145 QCPNLQLFLLFRQG-YGPVQIS---DLFFEGTEELKVLSLIGIHFSS-----LPSSLGRLINLQTLCLDWCQLED--V--  211 (421)
Q Consensus       145 ~~~~L~~L~l~~~~-~~~~~~~---~~~~~~l~~L~~L~l~~~~~~~-----lp~~i~~l~~L~~L~l~~~~~~~--~--  211 (421)
                      +.+.|+.|+++++. + .....   ...+...+.|++|++++|.+..     +...+...+.|+.|++++|.+..  .  
T Consensus        13 n~~~L~~L~L~~~~~i-~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~   91 (167)
T d1pgva_          13 DDTDLKEVNINNMKRV-SKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR   91 (167)
T ss_dssp             TCSSCCEEECTTCCSS-CHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred             CCCCCcEEEeCCCCCC-CHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHH
Confidence            45677777777532 2 12111   1224567889999999998753     34456677889999999998776  2  


Q ss_pred             --ccccCcCCCCEEEeeCCCCccc--------chhhcCCCCCCEEeccC
Q 038338          212 --AAIGQLKKLEILNLADSNIEQL--------PLEIGQLTGLRLLDLTN  250 (421)
Q Consensus       212 --~~~~~l~~L~~L~l~~~~l~~l--------p~~~~~l~~L~~L~l~~  250 (421)
                        ..+..-+.|++|+++++.+..+        ...+..-++|++|+++.
T Consensus        92 l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~  140 (167)
T d1pgva_          92 LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISF  140 (167)
T ss_dssp             HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCC
T ss_pred             HHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcC
Confidence              4566778899999998865533        33344566777777655

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.08  E-value=0.00043  Score=54.20  Aligned_cols=80  Identities=16%  Similarity=0.168  Sum_probs=37.5

Q ss_pred             ccCCCccEEEccCC-CCCC-----CChhhhcccCCcEEEcccccCCC--c----ccccCcCCCCEEEeeCCCCc-----c
Q 038338          170 EGTEELKVLSLIGI-HFSS-----LPSSLGRLINLQTLCLDWCQLED--V----AAIGQLKKLEILNLADSNIE-----Q  232 (421)
Q Consensus       170 ~~l~~L~~L~l~~~-~~~~-----lp~~i~~l~~L~~L~l~~~~~~~--~----~~~~~l~~L~~L~l~~~~l~-----~  232 (421)
                      .+.+.|++|+++++ .++.     +-..+...++|++|++++|.+..  .    ..+...+.++.+++++|.+.     .
T Consensus        14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~   93 (166)
T d1io0a_          14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA   93 (166)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred             hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHH
Confidence            34455666666542 3321     22233445556666666655443  1    23334455555555555443     2


Q ss_pred             cchhhcCCCCCCEEecc
Q 038338          233 LPLEIGQLTGLRLLDLT  249 (421)
Q Consensus       233 lp~~~~~l~~L~~L~l~  249 (421)
                      +...+...++|+.+++.
T Consensus        94 l~~~l~~~~~L~~l~L~  110 (166)
T d1io0a_          94 LVEALQSNTSLIELRID  110 (166)
T ss_dssp             HHHGGGGCSSCCEEECC
T ss_pred             HHHHHHhCccccEEeec
Confidence            23334444555544443

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.83  E-value=0.00079  Score=52.60  Aligned_cols=106  Identities=17%  Similarity=0.162  Sum_probs=69.6

Q ss_pred             CCCCccEEEeeec-CCCCccc---ChHHhccCCCccEEEccCCCCCC-----CChhhhcccCCcEEEcccccCCC-----
Q 038338          145 QCPNLQLFLLFRQ-GYGPVQI---SDLFFEGTEELKVLSLIGIHFSS-----LPSSLGRLINLQTLCLDWCQLED-----  210 (421)
Q Consensus       145 ~~~~L~~L~l~~~-~~~~~~~---~~~~~~~l~~L~~L~l~~~~~~~-----lp~~i~~l~~L~~L~l~~~~~~~-----  210 (421)
                      +.+.|+.|++++. .+ ....   ....+...++|+.|++++|.++.     +...+.....++.+++++|.+..     
T Consensus        15 ~~~~L~~L~L~~~~~i-~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~   93 (166)
T d1io0a_          15 NDPDLEEVNLNNIMNI-PVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA   93 (166)
T ss_dssp             TCTTCCEEECTTCTTC-CHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred             cCCCCcEEEcCCCCCC-CHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHH
Confidence            4567777777653 22 1111   11223567889999999888753     34456677889999999888765     


Q ss_pred             -cccccCcCCCCEEEeeC--CCCc-----ccchhhcCCCCCCEEeccCC
Q 038338          211 -VAAIGQLKKLEILNLAD--SNIE-----QLPLEIGQLTGLRLLDLTNC  251 (421)
Q Consensus       211 -~~~~~~l~~L~~L~l~~--~~l~-----~lp~~~~~l~~L~~L~l~~~  251 (421)
                       ...+...++|+.+++..  +.+.     .+...+...++|++|++..+
T Consensus        94 l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~  142 (166)
T d1io0a_          94 LVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT  142 (166)
T ss_dssp             HHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred             HHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCC
Confidence             25667778888877654  4554     34455667788888887653