Citrus Sinensis ID: 038343
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 191 | 2.2.26 [Sep-21-2011] | |||||||
| Q96G04 | 330 | Protein FAM86A OS=Homo sa | no | no | 0.806 | 0.466 | 0.252 | 3e-13 | |
| Q86JB0 | 359 | Putative uncharacterized | no | no | 0.795 | 0.423 | 0.325 | 5e-13 | |
| Q8N7N1 | 296 | Protein FAM86B1 OS=Homo s | no | no | 0.806 | 0.520 | 0.252 | 3e-12 | |
| P0C5J1 | 330 | Protein FAM86B2 OS=Homo s | no | no | 0.806 | 0.466 | 0.252 | 4e-12 | |
| Q1JPJ9 | 340 | Protein FAM86A OS=Bos tau | yes | no | 0.811 | 0.455 | 0.246 | 2e-11 | |
| Q3UZW7 | 335 | Protein FAM86A OS=Mus mus | yes | no | 0.675 | 0.385 | 0.3 | 2e-09 | |
| Q5RJL2 | 225 | Methyltransferase-like pr | no | no | 0.643 | 0.546 | 0.273 | 1e-06 | |
| Q6DJF8 | 234 | Methyltransferase-like pr | N/A | no | 0.617 | 0.504 | 0.276 | 1e-06 | |
| P30643 | 371 | Uncharacterized protein R | yes | no | 0.732 | 0.377 | 0.292 | 2e-06 | |
| A4IGU3 | 215 | Protein-lysine methyltran | no | no | 0.575 | 0.511 | 0.338 | 3e-06 |
| >sp|Q96G04|FA86A_HUMAN Protein FAM86A OS=Homo sapiens GN=FAM86A PE=2 SV=2 | Back alignment and function desciption |
|---|
Score = 74.7 bits (182), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 84/186 (45%), Gaps = 32/186 (17%)
Query: 4 WPSSLLLSEFILSFPEIFSNKSCFEVGSGVGLVGICLAHV-KASKVTLTDGDHLTLANMR 62
W ++L L+E+ + P +F+N++ E+GSG GL G+ + + + +D L +R
Sbjct: 139 WDAALYLAEWAIENPAVFTNRTVLELGSGAGLTGLAICKMCRPRAYIFSDCHSRVLEQLR 198
Query: 63 SNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESGLSAFVPEIILGADILYDRSCFP 122
N+ LN LS + + + P V L W+ A+ LSAF P++++ AD+LY
Sbjct: 199 GNVLLNGLSLEADITAKLDSPRVT-VAQLDWDVATVHQLSAFQPDVVIAADVLYCPEAIM 257
Query: 123 DLVRILAILLNRRKSVSSSRKESSKGFTLDTKCNTNDLNDLTAVTSKGPVAYIATVIRNI 182
LV +L + +++ R+ + P Y+A +RN
Sbjct: 258 SLVGVL-------RRLAACREH-----------------------QRAPEVYVAFTVRNP 287
Query: 183 DTFNYF 188
+T F
Sbjct: 288 ETCQLF 293
|
Homo sapiens (taxid: 9606) |
| >sp|Q86JB0|Y8324_DICDI Putative uncharacterized protein DDB_G0277003 OS=Dictyostelium discoideum GN=DDB_G0277003 PE=4 SV=2 | Back alignment and function description |
|---|
Score = 74.3 bits (181), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 65/200 (32%), Positives = 88/200 (44%), Gaps = 48/200 (24%)
Query: 4 WPSSLLLSEFILSFPEIFSNKSCFEVGSGVGLVGICLAHVKA-SKVTLTDGDHLTLANMR 62
W ++ LS+FILS +F NK+ E+GSG GLVGI L +K KV LTD L N++
Sbjct: 149 WGAAYQLSDFILSNQNLFINKNILELGSGTGLVGIILDFIKPLKKVILTDYSPKVLKNLK 208
Query: 63 SNLELNQLSTDTSL----------LESYEDPNVVQCVHLPWESASESGLSAFV----PEI 108
N+ELN L + + D + Q L WE + L+ + I
Sbjct: 209 FNMELNNLEIQDFINDDDDDNNNNVNKENDDKINQVRVLDWEIEDLNILNNYSGLNDSNI 268
Query: 109 ILGADILYDRSCFPDLVRILAILLNRRKSVSSSRKESSKGFTLDTKCNTNDLNDLTAVTS 168
ILGADI+Y+ S LV IL LL R +
Sbjct: 269 ILGADIVYEPSLCKYLVSILYFLLER---------------------------------N 295
Query: 169 KGPVAYIATVIRNIDTFNYF 188
+ VAYI++ IRN TF+ F
Sbjct: 296 ENSVAYISSTIRNQSTFSIF 315
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Dictyostelium discoideum (taxid: 44689) |
| >sp|Q8N7N1|F86B1_HUMAN Protein FAM86B1 OS=Homo sapiens GN=FAM86B1 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 71.6 bits (174), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 85/186 (45%), Gaps = 32/186 (17%)
Query: 4 WPSSLLLSEFILSFPEIFSNKSCFEVGSGVGLVGICLAHV-KASKVTLTDGDHLTLANMR 62
W ++L L+E+ + P F N++ E+GSG GL G+ + + + +D L +R
Sbjct: 105 WDAALYLAEWAIENPAAFINRTVLELGSGAGLTGLAICKMCRPRAYIFSDPHSRVLEQLR 164
Query: 63 SNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESGLSAFVPEIILGADILYDRSCFP 122
N+ LN LS + + + + P V L W+ A LSAF P++++ AD+LY C
Sbjct: 165 GNVLLNGLSLEADITGNLDSPRVT-VAQLDWDVAMVHQLSAFQPDVVIAADVLY---CPE 220
Query: 123 DLVRILAILLNRRKSVSSSRKESSKGFTLDTKCNTNDLNDLTAVTSKGPVAYIATVIRNI 182
+V ++ +L + +++ R+ + P Y+A +RN
Sbjct: 221 AIVSLVGVL----QRLAACREH-----------------------KRAPEVYVAFTVRNP 253
Query: 183 DTFNYF 188
+T F
Sbjct: 254 ETCQLF 259
|
Homo sapiens (taxid: 9606) |
| >sp|P0C5J1|F86B2_HUMAN Protein FAM86B2 OS=Homo sapiens GN=FAM86B2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 71.2 bits (173), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 85/186 (45%), Gaps = 32/186 (17%)
Query: 4 WPSSLLLSEFILSFPEIFSNKSCFEVGSGVGLVGICLAHV-KASKVTLTDGDHLTLANMR 62
W ++L L+E+ + P F N++ E+GSG GL G+ + + + +D L +R
Sbjct: 139 WDAALYLAEWAIENPAAFINRTVLELGSGAGLTGLAICKMCRPRAYIFSDPHSRILEQLR 198
Query: 63 SNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESGLSAFVPEIILGADILYDRSCFP 122
N+ LN LS + + + + P V L W+ A LSAF P++++ AD+LY C
Sbjct: 199 GNVLLNGLSLEADITGNLDSPRVT-VAQLDWDVAMVHQLSAFQPDVVIAADVLY---CPE 254
Query: 123 DLVRILAILLNRRKSVSSSRKESSKGFTLDTKCNTNDLNDLTAVTSKGPVAYIATVIRNI 182
+V ++ +L + +++ R+ + P Y+A +RN
Sbjct: 255 AIVSLVGVL----QRLAACREH-----------------------KRAPEVYVAFTVRNP 287
Query: 183 DTFNYF 188
+T F
Sbjct: 288 ETCQLF 293
|
Homo sapiens (taxid: 9606) |
| >sp|Q1JPJ9|FA86A_BOVIN Protein FAM86A OS=Bos taurus GN=FAM86A PE=2 SV=2 | Back alignment and function description |
|---|
Score = 68.6 bits (166), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 87/195 (44%), Gaps = 40/195 (20%)
Query: 4 WPSSLLLSEFILSFPEIFSNKSCFEVGSGVGLVGICLAHV-KASKVTLTDGDHLTLANMR 62
W ++L L+E+ + P +F+++ E+GSG GL G+ + + +D L +R
Sbjct: 139 WNAALYLAEWAVENPAVFAHRMVLELGSGAGLTGLAICKTCRPRAYIFSDCHSHVLEQLR 198
Query: 63 SNLELNQLSTDTSLLESYEDPNV---------VQCVHLPWESASESGLSAFVPEIILGAD 113
N+ LN S + S+ + P V L W++ + L+AF P+++L AD
Sbjct: 199 GNVLLNGFSLEPSIDTWAQHPGPHTPEAERPWVTVARLDWDTVTAPQLAAFQPDVVLAAD 258
Query: 114 ILYDRSCFPDLVRILAILLNRRKSVSSSRKESSKGFTLDTKCNTNDLNDLTAVTSKGPVA 173
+LY C ++ ++ +L + +S+ RK+ + P A
Sbjct: 259 VLY---CPETVLSLVGVL----RKLSTCRKD-----------------------QRAPDA 288
Query: 174 YIATVIRNIDTFNYF 188
YIA +RN +T F
Sbjct: 289 YIAFTVRNPETCQLF 303
|
Bos taurus (taxid: 9913) |
| >sp|Q3UZW7|FA86A_MOUSE Protein FAM86A OS=Mus musculus GN=Fam86a PE=2 SV=1 | Back alignment and function description |
|---|
Score = 62.4 bits (150), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 72/140 (51%), Gaps = 11/140 (7%)
Query: 4 WPSSLLLSEFILSFPEIFSNKSCFEVGSGVGLVGICLAHVKASKVTL-TDGDHLTLANMR 62
W ++L L+E+ + P F++++ E+GSG GL G+ + + + +D L +R
Sbjct: 139 WDAALYLAEWAIENPAAFTDRTILELGSGAGLTGLAICKACCPRAYIFSDCHAQVLEQLR 198
Query: 63 SNLELNQLSTDTSLLESYEDPNV----VQCVHLPWESASESGLSAFVPEIILGADILYDR 118
N+ LN S LE + + V L W+ + S LSAF ++++ AD+LY
Sbjct: 199 GNVLLNGFS-----LEPHTPIDAGSSKVTVAQLDWDEVTASQLSAFQADVVIAADVLYCW 253
Query: 119 SCFPDLVRILAILLN-RRKS 137
LVR+L +L + +RKS
Sbjct: 254 EMTLSLVRVLKMLEDCQRKS 273
|
Mus musculus (taxid: 10090) |
| >sp|Q5RJL2|MET23_RAT Methyltransferase-like protein 23 OS=Rattus norvegicus GN=Mettl23 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 66/139 (47%), Gaps = 16/139 (11%)
Query: 3 IWPSSLLLSEFILSFPEIFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLT--LAN 60
+WP +++L++++ + K+ E+G+GV L GI LA +KVTL+D L L
Sbjct: 38 VWPCAVVLAQYLWFHRRVLPGKAVLEIGAGVSLPGI-LAAKCGAKVTLSDSPELPHCLDI 96
Query: 61 MRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESGLSAFVPEIILGADILYDRSC 120
+ ++N L VQ V L W S+ LS +IILG+D+ ++
Sbjct: 97 CWQSCQMNNLPQ-------------VQIVGLTWGHISKDTLSLPPQDIILGSDVFFEPED 143
Query: 121 FPDLVRILAILLNRRKSVS 139
F ++ + L+ + V
Sbjct: 144 FESILATVYFLMQKNPKVQ 162
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Probable methyltransferase. Rattus norvegicus (taxid: 10116) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q6DJF8|MET23_XENLA Methyltransferase-like protein 23 OS=Xenopus laevis GN=mettl23 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 65/134 (48%), Gaps = 16/134 (11%)
Query: 3 IWPSSLLLSEFILSFPEIFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLT--LAN 60
+WP +++L++++ + ++K EVG+GV L GI LA +KV L+D + L N
Sbjct: 43 VWPCAVVLAQYLWYHRKNLADKRVLEVGAGVSLPGI-LAAKCGAKVILSDSAEMPQCLEN 101
Query: 61 MRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESGLSAFVPEIILGADILYDRSC 120
R + ++N + V + L W S L +IILG+D+ Y+
Sbjct: 102 CRRSCKMNNIVG-------------VPVIGLTWGEVSPDLLDLPPIDIILGSDVFYEPKD 148
Query: 121 FPDLVRILAILLNR 134
F D++ + L+ R
Sbjct: 149 FEDILLTVRFLMER 162
|
Probable methyltransferase. Xenopus laevis (taxid: 8355) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|P30643|YNE4_CAEEL Uncharacterized protein R08D7.4 OS=Caenorhabditis elegans GN=R08D7.4 PE=2 SV=3 | Back alignment and function description |
|---|
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 69/147 (46%), Gaps = 7/147 (4%)
Query: 2 SIWPSSLLLSEFILSFPEIFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANM 61
S+W +S L+ P ++ E+GSG G+ GI +A + VTLTD D L +
Sbjct: 167 SVWQASCDLANLFRLIPSEYN--RILELGSGCGVSGIAIAKMNDCCVTLTDYDDNVLNLL 224
Query: 62 RSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESGLSAFVPEIILGADILYDRSCF 121
N+ N L +DT +S + N L W S ++I+ AD++YD +
Sbjct: 225 EENIAKNDLKSDTE--DSSANNNQATVRSLNWCDFDFSEWKE-PTDLIIAADVVYDTALL 281
Query: 122 PDLVRILAILLNRRKS--VSSSRKESS 146
L +L +LL K+ V+ +R+ S
Sbjct: 282 ASLCNVLNLLLRHSKAAIVACTRRNES 308
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Caenorhabditis elegans (taxid: 6239) |
| >sp|A4IGU3|MT21A_XENTR Protein-lysine methyltransferase METTL21A OS=Xenopus tropicalis GN=mettl21a PE=2 SV=1 | Back alignment and function description |
|---|
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 65/124 (52%), Gaps = 14/124 (11%)
Query: 3 IWPSSLLLSEFILSFPEIFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMR 62
+W ++L+L ++ S N S E+G+G GLVGI A + A +VT+TD D L + +R
Sbjct: 46 VWDAALVLCMYLESEGIHLQNSSVIELGAGTGLVGIVAALLGA-QVTITDRD-LAMEFLR 103
Query: 63 SNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESGLSAFVPEIILGADILYDRSCFP 122
N+ N + D+ + V L W + E S + + ILGADI+Y FP
Sbjct: 104 MNVRDN-IPKDS--------LHRVSVRALNWGKSLEE-FSTY--DFILGADIIYLEETFP 151
Query: 123 DLVR 126
DL++
Sbjct: 152 DLLQ 155
|
Probable methyltransferase. Xenopus tropicalis (taxid: 8364) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 191 | ||||||
| 224131450 | 401 | predicted protein [Populus trichocarpa] | 1.0 | 0.476 | 0.519 | 2e-57 | |
| 357512063 | 397 | Protein FAM86A [Medicago truncatula] gi| | 0.989 | 0.476 | 0.563 | 2e-55 | |
| 449443192 | 934 | PREDICTED: branched-chain-amino-acid ami | 0.984 | 0.201 | 0.594 | 9e-54 | |
| 449482871 | 390 | PREDICTED: protein FAM86A-like [Cucumis | 0.984 | 0.482 | 0.594 | 1e-53 | |
| 297812983 | 369 | hypothetical protein ARALYDRAFT_910844 [ | 0.931 | 0.482 | 0.569 | 8e-53 | |
| 359487776 | 960 | PREDICTED: branched-chain-amino-acid ami | 1.0 | 0.198 | 0.555 | 2e-51 | |
| 296088294 | 975 | unnamed protein product [Vitis vinifera] | 0.921 | 0.180 | 0.593 | 2e-50 | |
| 334187975 | 936 | branched-chain-amino-acid aminotransfera | 0.931 | 0.190 | 0.538 | 4e-50 | |
| 15240919 | 369 | S-adenosyl-L-methionine-dependent methyl | 0.931 | 0.482 | 0.538 | 4e-50 | |
| 255542554 | 411 | conserved hypothetical protein [Ricinus | 1.0 | 0.464 | 0.545 | 7e-49 |
| >gi|224131450|ref|XP_002328542.1| predicted protein [Populus trichocarpa] gi|222838257|gb|EEE76622.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 227 bits (578), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 122/235 (51%), Positives = 156/235 (66%), Gaps = 44/235 (18%)
Query: 1 CSIWPSSLLLSEFILSFPEIFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLAN 60
CS+WPSSL LSEF+LSFP+IFSNKSCFEVGSGVGLVGICL+HVKAS+V L+DGD TL+N
Sbjct: 127 CSVWPSSLYLSEFVLSFPDIFSNKSCFEVGSGVGLVGICLSHVKASQVILSDGDLSTLSN 186
Query: 61 MRSNLELNQLSTDTSLLESY-EDPNVVQ----------CVHLPWESASESGLSAFVPEII 109
M+ NL+LNQLS +T +LE + EDPN VQ C HLPWESA+ES L ++P+II
Sbjct: 187 MKLNLKLNQLSAETDVLERFGEDPNTVQAELYNKSKVKCFHLPWESATESELEDYLPDII 246
Query: 110 LGADILYDRSCFPDLVRILAILLNRRKSVSSSRKESSKGFTLDTK--------------- 154
LGAD++YD SC P L+R+L ILL ++K+ + + +ES +G D +
Sbjct: 247 LGADVIYDPSCLPHLLRVLVILLKQKKAYTQTWEESCEGRLQDAEHIDVNGASEGKSLFA 306
Query: 155 ----------------CNTNDLNDLTAVTS--KGPVAYIATVIRNIDTFNYFLSL 191
C+ +L+ ++V K PVAYIA+VIRNIDTFN FL L
Sbjct: 307 HDIHCVTIQNGNRTDPCHVEELHGGSSVARLMKCPVAYIASVIRNIDTFNCFLKL 361
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357512063|ref|XP_003626320.1| Protein FAM86A [Medicago truncatula] gi|355501335|gb|AES82538.1| Protein FAM86A [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 220 bits (561), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 116/206 (56%), Positives = 140/206 (67%), Gaps = 17/206 (8%)
Query: 1 CSIWPSSLLLSEFILSFPEIFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLAN 60
CSIWPSSL LSE ILS PE+FSNK CFE+GSGVGLVG+CLAHVKASKV L+DGD TLAN
Sbjct: 148 CSIWPSSLFLSELILSHPELFSNKVCFEIGSGVGLVGLCLAHVKASKVILSDGDLSTLAN 207
Query: 61 MRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESGLSAFVPEIILGADILYDRSC 120
M+ NLELN L+ +T + ED + V+C++LPWESASES L +P++ILGAD++YD C
Sbjct: 208 MKFNLELNNLNVETGTAQRNEDTSAVKCMYLPWESASESQLQDIIPDVILGADVIYDPVC 267
Query: 121 FPDLVRILAILLNRRKSVSSSRKESSK---------------GFTLDTKCNTNDLNDLTA 165
P LVR++ ILLN+R SSS+ S K G K ND
Sbjct: 268 LPHLVRVITILLNQRNMDSSSKGLSPKCELENGEHYYKGAIDGSEGRYKSVNND--GCNG 325
Query: 166 VTSKGPVAYIATVIRNIDTFNYFLSL 191
+ PVAYIA VIRNI+TFNYFL+L
Sbjct: 326 QPKEAPVAYIACVIRNIETFNYFLTL 351
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449443192|ref|XP_004139364.1| PREDICTED: branched-chain-amino-acid aminotransferase-like protein 2-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 215 bits (547), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 116/195 (59%), Positives = 136/195 (69%), Gaps = 7/195 (3%)
Query: 1 CSIWPSSLLLSEFILSFPEIFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLAN 60
CSIWPSSL LSE ILSFP+IFS + CFEVGSGVGLVGICLAHVKASK+ L+DGD TLAN
Sbjct: 152 CSIWPSSLYLSELILSFPDIFSTRECFEVGSGVGLVGICLAHVKASKIVLSDGDPSTLAN 211
Query: 61 MRSNLELNQLSTDTSLLESYEDPN----VVQCVHLPWESASESGLSAFVPEIILGADILY 116
M+ NLELN L +S + E N V+C+HLPWES SE+ L AF P I+LGAD++Y
Sbjct: 212 MKVNLELNGLCCLSSPTATSERTNECTQTVECIHLPWESTSETELQAFAPHIVLGADVIY 271
Query: 117 DRSCFPDLVRILAILLNRRKSVSSSRKESSKGFTLDTKCNTNDLNDLTAVTSKGPVAYIA 176
D C PDLVR+L+ILL R K + SS S T ND + + P+AYIA
Sbjct: 272 DPICLPDLVRVLSILL-RPKQIGSS--THSFPVTEHVDDQRNDGSRGFKTSRDHPIAYIA 328
Query: 177 TVIRNIDTFNYFLSL 191
+VIRNIDTFN FLSL
Sbjct: 329 SVIRNIDTFNRFLSL 343
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449482871|ref|XP_004156428.1| PREDICTED: protein FAM86A-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 214 bits (546), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 116/195 (59%), Positives = 139/195 (71%), Gaps = 7/195 (3%)
Query: 1 CSIWPSSLLLSEFILSFPEIFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLAN 60
CSIWPSSL LSE ILSFP+IFS + CFEVGSGVGLVGICLAHVKASK+ L+DGD TLAN
Sbjct: 159 CSIWPSSLYLSELILSFPDIFSTRECFEVGSGVGLVGICLAHVKASKIVLSDGDPSTLAN 218
Query: 61 MRSNLELNQ---LSTDTSLLE-SYEDPNVVQCVHLPWESASESGLSAFVPEIILGADILY 116
M+ NLELN LS+ T+ E + E V+C+HLPWES SE+ L AF P I+LGAD++Y
Sbjct: 219 MKVNLELNGLCCLSSPTATSERTNEGTQTVECIHLPWESTSETELQAFAPHIVLGADVIY 278
Query: 117 DRSCFPDLVRILAILLNRRKSVSSSRKESSKGFTLDTKCNTNDLNDLTAVTSKGPVAYIA 176
D C PDLVR+L+ILL R K + SS +D + ND + + P+AYIA
Sbjct: 279 DPICLPDLVRVLSILL-RPKQIGSSTHSFPVTEHVDDQ--RNDGSRGFKTSRDHPIAYIA 335
Query: 177 TVIRNIDTFNYFLSL 191
+VIRNIDTFN FLSL
Sbjct: 336 SVIRNIDTFNRFLSL 350
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297812983|ref|XP_002874375.1| hypothetical protein ARALYDRAFT_910844 [Arabidopsis lyrata subsp. lyrata] gi|297320212|gb|EFH50634.1| hypothetical protein ARALYDRAFT_910844 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 211 bits (538), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 110/193 (56%), Positives = 136/193 (70%), Gaps = 15/193 (7%)
Query: 1 CSIWPSSLLLSEFILSFPEIFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLAN 60
CSIWPSSL LSEF+LSFPE+F+NK CFEVGSGVG+VGICLAHVKA KV LTDGD LTL+N
Sbjct: 149 CSIWPSSLFLSEFVLSFPELFANKFCFEVGSGVGMVGICLAHVKAKKVILTDGDLLTLSN 208
Query: 61 MRSNLELNQLSTDTSLLESYEDPN--VVQCVHLPWESASESGLSAFVPEIILGADILYDR 118
M+ NLE N L+ D LL+ + V+C+HLPWE+ASES LS + P+IILGAD++YD
Sbjct: 209 MKLNLERNHLNYDDELLKQPGEAQSTQVKCIHLPWETASESELSEYRPDIILGADVIYDP 268
Query: 119 SCFPDLVRILAILLNRRKSVSSSRKESSKGFTLDTKCNTNDLNDLTAVTSKGPVAYIATV 178
SC P L+R+L LLN+ ++++ T D+ D T VAYIA+V
Sbjct: 269 SCLPHLLRVLVALLNK-----PPKRDNGSFETEDS--------DTTPQGHSPKVAYIASV 315
Query: 179 IRNIDTFNYFLSL 191
IRN DTFN FL+L
Sbjct: 316 IRNADTFNVFLTL 328
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359487776|ref|XP_002284915.2| PREDICTED: branched-chain-amino-acid aminotransferase-like protein 2 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 207 bits (526), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 116/209 (55%), Positives = 149/209 (71%), Gaps = 18/209 (8%)
Query: 1 CSIWPSSLLLSEFILSFPEIFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLAN 60
CSIWPSSL LSEFILS PEIFSNKSCFEVGSGVGLVGICLAHVKASKV L++G +LAN
Sbjct: 151 CSIWPSSLFLSEFILSHPEIFSNKSCFEVGSGVGLVGICLAHVKASKVILSEGGLSSLAN 210
Query: 61 MRSNLELNQLSTDT-SLLESYEDPNVVQCVHLPWESASESGLSAFVPEIILGADILYDRS 119
M+ NLELNQL+ + +DPN+V+C+ LPWESA ES L F+P+IILGAD++Y+
Sbjct: 211 MKLNLELNQLNNRMDDPGTTNQDPNLVKCIFLPWESAEESELQNFMPDIILGADVIYNPL 270
Query: 120 CFPDLVRILAILLNRRKSVSSSRKESSKGFTLDTKC-----------NTNDLNDLTAVTS 168
C P L+R+LA LLN+ +S S ++++ F+ D++C + +D + +
Sbjct: 271 CLPHLIRVLATLLNQTRSSSPLQQDNCVEFSPDSRCIMDARAEGADIHNHDHGSRSTTNA 330
Query: 169 KG------PVAYIATVIRNIDTFNYFLSL 191
G PVAYIA+VIRNI+TFNYFL+L
Sbjct: 331 DGGGKNSVPVAYIASVIRNIETFNYFLAL 359
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296088294|emb|CBI36739.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 204 bits (518), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 114/192 (59%), Positives = 142/192 (73%), Gaps = 16/192 (8%)
Query: 1 CSIWPSSLLLSEFILSFPEIFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLAN 60
CSIWPSSL LSEFILS PEIFSNKSCFEVGSGVGLVGICLAHVKASKV L++G +LAN
Sbjct: 151 CSIWPSSLFLSEFILSHPEIFSNKSCFEVGSGVGLVGICLAHVKASKVILSEGGLSSLAN 210
Query: 61 MRSNLELNQLSTDT-SLLESYEDPNVVQCVHLPWESASESGLSAFVPEIILGADILYDRS 119
M+ NLELNQL+ + +DPN+V+C+ LPWESA ES L F+P+IILGAD++Y+
Sbjct: 211 MKLNLELNQLNNRMDDPGTTNQDPNLVKCIFLPWESAEESELQNFMPDIILGADVIYNPL 270
Query: 120 CFPDLVRILAILLNRRKSVSSSRKESSKGFTLDTKCNTNDLNDLTAVTSKGPVAYIATVI 179
C P L+R+LA LLN+ +S S ++++ F+ D S+ PVAYIA+VI
Sbjct: 271 CLPHLIRVLATLLNQTRSSSPLQQDNCVEFSPD---------------SRFPVAYIASVI 315
Query: 180 RNIDTFNYFLSL 191
RNI+TFNYFL+L
Sbjct: 316 RNIETFNYFLAL 327
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|334187975|ref|NP_001190410.1| branched-chain-amino-acid aminotransferase-like protein 2 [Arabidopsis thaliana] gi|332006301|gb|AED93684.1| branched-chain-amino-acid aminotransferase-like protein 2 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 202 bits (515), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 104/193 (53%), Positives = 129/193 (66%), Gaps = 15/193 (7%)
Query: 1 CSIWPSSLLLSEFILSFPEIFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLAN 60
CSIWPSSL LSEF+LSFPE+F+NK+CFEVGSGVG+VGICLAHVKA +V LTDGD LTL+N
Sbjct: 149 CSIWPSSLFLSEFVLSFPELFANKACFEVGSGVGMVGICLAHVKAKEVILTDGDLLTLSN 208
Query: 61 MRSNLELNQLSTDTSLLESYEDPN--VVQCVHLPWESASESGLSAFVPEIILGADILYDR 118
M+ NLE N L+ D L+ + V+C HLPWE+ASES LS + P+I+LGAD++YD
Sbjct: 209 MKLNLERNHLNYDDEFLKQPGEAQSTRVKCTHLPWETASESELSQYRPDIVLGADVIYDP 268
Query: 119 SCFPDLVRILAILLNRRKSVSSSRKESSKGFTLDTKCNTNDLNDLTAVTSKGPVAYIATV 178
SC P L+R+L LL + E+ D T VAYIA+V
Sbjct: 269 SCLPHLLRVLVALLKNPPKRGNGSLETED-------------RDTTQEEHSPAVAYIASV 315
Query: 179 IRNIDTFNYFLSL 191
IRN+DTFN L+L
Sbjct: 316 IRNVDTFNVCLTL 328
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15240919|ref|NP_198092.1| S-adenosyl-L-methionine-dependent methyltransferase domain-containing protein [Arabidopsis thaliana] gi|29029094|gb|AAO64926.1| At5g27400 [Arabidopsis thaliana] gi|110743031|dbj|BAE99408.1| hypothetical protein [Arabidopsis thaliana] gi|332006299|gb|AED93682.1| S-adenosyl-L-methionine-dependent methyltransferase domain-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 202 bits (515), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 104/193 (53%), Positives = 129/193 (66%), Gaps = 15/193 (7%)
Query: 1 CSIWPSSLLLSEFILSFPEIFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLAN 60
CSIWPSSL LSEF+LSFPE+F+NK+CFEVGSGVG+VGICLAHVKA +V LTDGD LTL+N
Sbjct: 149 CSIWPSSLFLSEFVLSFPELFANKACFEVGSGVGMVGICLAHVKAKEVILTDGDLLTLSN 208
Query: 61 MRSNLELNQLSTDTSLLESYEDPN--VVQCVHLPWESASESGLSAFVPEIILGADILYDR 118
M+ NLE N L+ D L+ + V+C HLPWE+ASES LS + P+I+LGAD++YD
Sbjct: 209 MKLNLERNHLNYDDEFLKQPGEAQSTRVKCTHLPWETASESELSQYRPDIVLGADVIYDP 268
Query: 119 SCFPDLVRILAILLNRRKSVSSSRKESSKGFTLDTKCNTNDLNDLTAVTSKGPVAYIATV 178
SC P L+R+L LL + E+ D T VAYIA+V
Sbjct: 269 SCLPHLLRVLVALLKNPPKRGNGSLETED-------------RDTTQEEHSPAVAYIASV 315
Query: 179 IRNIDTFNYFLSL 191
IRN+DTFN L+L
Sbjct: 316 IRNVDTFNVCLTL 328
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255542554|ref|XP_002512340.1| conserved hypothetical protein [Ricinus communis] gi|223548301|gb|EEF49792.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 199 bits (505), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 121/222 (54%), Positives = 152/222 (68%), Gaps = 31/222 (13%)
Query: 1 CSIWPSSLLLSEFILSFPEIFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLAN 60
CS+WPSSL LSEF+LSFP+IFSNK+CFEVGSGVGLVG+CL+HVKASKV L+DGD TLAN
Sbjct: 150 CSVWPSSLYLSEFVLSFPDIFSNKTCFEVGSGVGLVGVCLSHVKASKVILSDGDLSTLAN 209
Query: 61 MRSNLELNQLSTDTSLLE-SYEDPN-------VVQCVHLPWESASESGLSAFVPEIILGA 112
M+ NLELN+ S DT + E + +D N V+C+HLPWESA+ + L F+P+I+LGA
Sbjct: 210 MKFNLELNESSVDTGMPERTMQDQNRVKAEMDKVKCIHLPWESATRNELQEFMPDIVLGA 269
Query: 113 DILYDRSCFPDLVRILAILLNRRKSVSSSRKESSKGFTLDT---------------KCNT 157
DI+YD SC P LV++LAILL + ++ S +E+ +G LD K +
Sbjct: 270 DIIYDPSCLPYLVQVLAILLKQTRAHSQMPEENCQGSLLDNNRADIKVKDGDESNCKADK 329
Query: 158 NDL-NDLT-------AVTSKGPVAYIATVIRNIDTFNYFLSL 191
N +DL A KGPVAYIA+VIRNIDTFN FL L
Sbjct: 330 NGCGSDLRLVDGSSDAAPRKGPVAYIASVIRNIDTFNCFLGL 371
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 191 | ||||||
| TAIR|locus:2146430 | 369 | AT5G27400 "AT5G27400" [Arabido | 0.931 | 0.482 | 0.481 | 9.9e-39 | |
| ZFIN|ZDB-GENE-041010-160 | 317 | fam86a "family with sequence s | 0.539 | 0.324 | 0.321 | 4.4e-11 | |
| MGI|MGI:1917761 | 335 | Fam86 "family with sequence si | 0.570 | 0.325 | 0.283 | 8.4e-10 | |
| WB|WBGene00011144 | 371 | R08D7.4 [Caenorhabditis elegan | 0.534 | 0.274 | 0.323 | 8.8e-07 | |
| UNIPROTKB|A4IGU3 | 215 | mettl21a "Protein-lysine methy | 0.471 | 0.418 | 0.375 | 1.1e-05 | |
| RGD|1311824 | 218 | Mettl21a "methyltransferase li | 0.481 | 0.422 | 0.363 | 1.2e-05 | |
| MGI|MGI:1914349 | 218 | Mettl21a "methyltransferase li | 0.497 | 0.435 | 0.355 | 2e-05 | |
| CGD|CAL0004470 | 323 | orf19.2066 [Candida albicans ( | 0.429 | 0.253 | 0.306 | 2.6e-05 | |
| UNIPROTKB|Q5AD01 | 323 | CaO19.2066 "Putative uncharact | 0.429 | 0.253 | 0.306 | 2.6e-05 | |
| UNIPROTKB|G4N9R8 | 346 | MGG_10684 "Uncharacterized pro | 0.591 | 0.326 | 0.268 | 8.2e-05 |
| TAIR|locus:2146430 AT5G27400 "AT5G27400" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 414 (150.8 bits), Expect = 9.9e-39, P = 9.9e-39
Identities = 93/193 (48%), Positives = 118/193 (61%)
Query: 1 CSIWXXXXXXXXXXXXXXXIFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLAN 60
CSIW +F+NK+CFEVGSGVG+VGICLAHVKA +V LTDGD LTL+N
Sbjct: 149 CSIWPSSLFLSEFVLSFPELFANKACFEVGSGVGMVGICLAHVKAKEVILTDGDLLTLSN 208
Query: 61 MRSNLELNQLSTDTSLLESYEDPNV--VQCVHLPWESASESGLSAFVPEIILGADILYDR 118
M+ NLE N L+ D L+ + V+C HLPWE+ASES LS + P+I+LGAD++YD
Sbjct: 209 MKLNLERNHLNYDDEFLKQPGEAQSTRVKCTHLPWETASESELSQYRPDIVLGADVIYDP 268
Query: 119 SCFPDLVRILAILLNXXXXXXXXXXXXXXGFTLDTKCNTNDLNDLTAVTSKGPVAYIATV 178
SC P L+R+L LL +L+T+ D D T VAYIA+V
Sbjct: 269 SCLPHLLRVLVALLKNPPKRGNG--------SLETE----D-RDTTQEEHSPAVAYIASV 315
Query: 179 IRNIDTFNYFLSL 191
IRN+DTFN L+L
Sbjct: 316 IRNVDTFNVCLTL 328
|
|
| ZFIN|ZDB-GENE-041010-160 fam86a "family with sequence similarity 86, member A" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 134 (52.2 bits), Expect = 4.4e-11, Sum P(2) = 4.4e-11
Identities = 37/115 (32%), Positives = 57/115 (49%)
Query: 20 IFSNKSCFEVGSGVGLVGICLAH-VKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLE 78
IF NK+ E+GSG+GL GI L +K +D L ++ N+ T+ L
Sbjct: 152 IFKNKTVLELGSGIGLTGIVLCRSCSLTKYIFSDCHQTVLQRLKDNI--------TNCLA 203
Query: 79 SYEDPNVVQCVHLPWESASESGLSAFVPEIILGADILYDRSCFPDLVRILAILLN 133
+ + +V + L WE+ S+ L I+ AD++YD LVR+L+ LLN
Sbjct: 204 NCDGVSVEE---LDWENVSDEQLQRIQANTIIAADVVYDPDIIACLVRLLSRLLN 255
|
|
| MGI|MGI:1917761 Fam86 "family with sequence similarity 86" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 128 (50.1 bits), Expect = 8.4e-10, Sum P(2) = 8.4e-10
Identities = 32/113 (28%), Positives = 57/113 (50%)
Query: 21 FSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHL-TLANMRSNLELNQLSTDTSL-LE 78
F++++ E+GSG GL G+ + + + H L +R N+ LN S + ++
Sbjct: 156 FTDRTILELGSGAGLTGLAICKACCPRAYIFSDCHAQVLEQLRGNVLLNGFSLEPHTPID 215
Query: 79 SYEDPNVVQCVHLPWESASESGLSAFVPEIILGADILYDRSCFPDLVRILAIL 131
+ + V L W+ + S LSAF ++++ AD+LY LVR+L +L
Sbjct: 216 A--GSSKVTVAQLDWDEVTASQLSAFQADVVIAADVLYCWEMTLSLVRVLKML 266
|
|
| WB|WBGene00011144 R08D7.4 [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
|---|
Score = 120 (47.3 bits), Expect = 8.8e-07, P = 8.8e-07
Identities = 34/105 (32%), Positives = 51/105 (48%)
Query: 28 EVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQ 87
E+GSG G+ GI +A + VTLTD D L + N+ N L +DT +S + N
Sbjct: 191 ELGSGCGVSGIAIAKMNDCCVTLTDYDDNVLNLLEENIAKNDLKSDTE--DSSANNNQAT 248
Query: 88 CVHLPWESASESGLSAFVPEIILGADILYDRSCFPDLVRILAILL 132
L W S ++I+ AD++YD + L +L +LL
Sbjct: 249 VRSLNWCDFDFSEWKE-PTDLIIAADVVYDTALLASLCNVLNLLL 292
|
|
| UNIPROTKB|A4IGU3 mettl21a "Protein-lysine methyltransferase METTL21A" [Xenopus (Silurana) tropicalis (taxid:8364)] | Back alignment and assigned GO terms |
|---|
Score = 113 (44.8 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 39/104 (37%), Positives = 57/104 (54%)
Query: 23 NKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYED 82
N S E+G+G GLVGI +A + ++VT+TD D L + +R N+ N + D SL
Sbjct: 66 NSSVIELGAGTGLVGI-VAALLGAQVTITDRD-LAMEFLRMNVRDN-IPKD-SL------ 115
Query: 83 PNVVQCVHLPWESASESGLSAFVPEIILGADILYDRSCFPDLVR 126
+ V L W + E S + + ILGADI+Y FPDL++
Sbjct: 116 -HRVSVRALNWGKSLEE-FSTY--DFILGADIIYLEETFPDLLQ 155
|
|
| RGD|1311824 Mettl21a "methyltransferase like 21A" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 113 (44.8 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 40/110 (36%), Positives = 57/110 (51%)
Query: 25 SCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPN 84
S E+G+G GLVGI +A + + VT+TD + L ++SN+E N L + P
Sbjct: 68 SAVELGAGTGLVGI-VAALLGAHVTITDRK-VALEFLKSNVEAN--------LPPHIQPK 117
Query: 85 VVQCVHLPWESASESGLSAFVP---EIILGADILYDRSCFPDLVRILAIL 131
VV L W L +F P ++ILGADI+Y F DL++ L L
Sbjct: 118 VV-VKELTWGQ----NLDSFSPGEFDLILGADIIYLEDTFTDLLQTLGHL 162
|
|
| MGI|MGI:1914349 Mettl21a "methyltransferase like 21A" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 112 (44.5 bits), Expect = 2.0e-05, P = 2.0e-05
Identities = 38/107 (35%), Positives = 56/107 (52%)
Query: 25 SCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPN 84
S E+G+G GLVGI +A + ++VT+TD + L ++SN+E N L + P
Sbjct: 68 SAVELGAGTGLVGI-VAALLGAQVTITDRK-VALEFLKSNVEAN--------LPPHIQPK 117
Query: 85 VVQCVHLPWESASESGLSAFVPEIILGADILYDRSCFPDLVRILAIL 131
V L W ES S ++ILGAD++Y F DL++ L L
Sbjct: 118 AV-VKELTWGQNLES-FSPGEFDLILGADVIYLEDTFTDLLQTLGHL 162
|
|
| CGD|CAL0004470 orf19.2066 [Candida albicans (taxid:5476)] | Back alignment and assigned GO terms |
|---|
Score = 102 (41.0 bits), Expect = 2.6e-05, Sum P(2) = 2.6e-05
Identities = 31/101 (30%), Positives = 48/101 (47%)
Query: 23 NKSCFEVGSGVGLVGICLA---HVKASKVT---LTDGDHLTLANMRSNLELNQLSTDTSL 76
NK+ E+G G GLV + LA H K + +TDG N++ L LN+L+
Sbjct: 154 NKTVMEIGCGTGLVSLALAKNYHRKIDNIKRLIMTDGSSNVFDNLQETLRLNELN----- 208
Query: 77 LESYEDPNVVQCVHLPWESASESGLSAFVPEIILGADILYD 117
D +++QC L W + + V + ++ ADI YD
Sbjct: 209 -----DSSIIQCQQLIW--GENTTIEDDV-DFLVAADITYD 241
|
|
| UNIPROTKB|Q5AD01 CaO19.2066 "Putative uncharacterized protein" [Candida albicans SC5314 (taxid:237561)] | Back alignment and assigned GO terms |
|---|
Score = 102 (41.0 bits), Expect = 2.6e-05, Sum P(2) = 2.6e-05
Identities = 31/101 (30%), Positives = 48/101 (47%)
Query: 23 NKSCFEVGSGVGLVGICLA---HVKASKVT---LTDGDHLTLANMRSNLELNQLSTDTSL 76
NK+ E+G G GLV + LA H K + +TDG N++ L LN+L+
Sbjct: 154 NKTVMEIGCGTGLVSLALAKNYHRKIDNIKRLIMTDGSSNVFDNLQETLRLNELN----- 208
Query: 77 LESYEDPNVVQCVHLPWESASESGLSAFVPEIILGADILYD 117
D +++QC L W + + V + ++ ADI YD
Sbjct: 209 -----DSSIIQCQQLIW--GENTTIEDDV-DFLVAADITYD 241
|
|
| UNIPROTKB|G4N9R8 MGG_10684 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)] | Back alignment and assigned GO terms |
|---|
Score = 111 (44.1 bits), Expect = 8.2e-05, P = 8.2e-05
Identities = 32/119 (26%), Positives = 57/119 (47%)
Query: 20 IFSNKSCFEVGSGVGLVG-ICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLE 78
+ S + E+G+G G + +C AH+ A+ V +DG +AN+ LN L +
Sbjct: 162 LVSGRRVLELGAGTGYLSMLCAAHLGAAHVVASDGSDDVVANLPEGAFLNGLQHEGQAAA 221
Query: 79 SYEDPNVVQCVHLPWESA----SESGLSAFVP-EIILGADILYDRSCFPDLVRILAILL 132
+ + VQ + L W A ++ + P ++LGAD+ YD + L+ +A L+
Sbjct: 222 AAAERAAVQPMDLKWGHALVGTEDARWNGGEPVHLVLGADVTYDATLAAPLLGTIAELV 280
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 191 | |||
| pfam10294 | 170 | pfam10294, Methyltransf_16, Putative methyltransfe | 3e-15 | |
| COG3897 | 218 | COG3897, COG3897, Predicted methyltransferase [Gen | 9e-06 | |
| TIGR00406 | 288 | TIGR00406, prmA, ribosomal protein L11 methyltrans | 7e-04 | |
| pfam05175 | 170 | pfam05175, MTS, Methyltransferase small domain | 0.002 | |
| COG2813 | 300 | COG2813, RsmC, 16S RNA G1207 methylase RsmC [Trans | 0.004 |
| >gnl|CDD|220679 pfam10294, Methyltransf_16, Putative methyltransferase | Back alignment and domain information |
|---|
Score = 69.7 bits (171), Expect = 3e-15
Identities = 44/158 (27%), Positives = 73/158 (46%), Gaps = 22/158 (13%)
Query: 1 CSIWPSSLLLSEFIL----SFPEIFSNKSCFEVGSGVGLVGICLA-HVKASKVTLTDGDH 55
+W ++++LS+++ S + E+GSG GLVGI +A + + VT+TD +
Sbjct: 19 GHVWDAAVVLSKYLEMKITPGGNNLSGLNVLELGSGTGLVGIAVALLLPGASVTITDLEE 78
Query: 56 LTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPW-ESASESGLSAFVPEIILGADI 114
+ M+ N+ELN LS+ V L W E + ++IL AD
Sbjct: 79 A-IELMKKNIELNGLSSK------------VTAKVLDWGEDLPDDVFDPHPVDLILAADC 125
Query: 115 LYDRSCFPDLVRILAILLNRRKSV---SSSRKESSKGF 149
+Y+ FP L + L LL + + R+E+ K F
Sbjct: 126 VYNEDSFPLLEKTLNDLLGKETVILVAYKKRREAEKRF 163
|
Length = 170 |
| >gnl|CDD|226413 COG3897, COG3897, Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 9e-06
Identities = 25/116 (21%), Positives = 42/116 (36%), Gaps = 20/116 (17%)
Query: 4 WPSSLLLSEFILSFPEIFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRS 63
W +L+ +I PE K ++G+G GLV I A A++V D D +R
Sbjct: 61 WAGGQVLARYIDDHPETVRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRL 120
Query: 64 NLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESGLSAFVPEIILGADILYDRS 119
N N +S + + P ++L D+ Y+ +
Sbjct: 121 NAAANGVSILFTHADLIGSPPAFD--------------------LLLAGDLFYNHT 156
|
Length = 218 |
| >gnl|CDD|232960 TIGR00406, prmA, ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Score = 39.0 bits (91), Expect = 7e-04
Identities = 20/59 (33%), Positives = 31/59 (52%)
Query: 24 KSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYED 82
K+ +VG G G++ I + A+KV D D L + + R N ELNQ+S + Y +
Sbjct: 161 KNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLE 219
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis [Protein synthesis, Ribosomal proteins: synthesis and modification]. Length = 288 |
| >gnl|CDD|203189 pfam05175, MTS, Methyltransferase small domain | Back alignment and domain information |
|---|
Score = 36.8 bits (86), Expect = 0.002
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Query: 11 SEFILS-FPEIFSNKSCFEVGSGVGLVGICLA-HVKASKVTLTDGDHLTLANMRSNLELN 68
S +LS P+ K ++G G G++G LA +VT+ D + L + R+NL N
Sbjct: 20 SRLLLSHLPKPLGGK-VLDLGCGYGVLGAALAKRSPDLEVTMVDINARALESARANLAAN 78
Query: 69 QLS 71
L
Sbjct: 79 GLE 81
|
This domain is found in ribosomal RNA small subunit methyltransferase C as well as other methyltransferases . Length = 170 |
| >gnl|CDD|225370 COG2813, RsmC, 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 36.9 bits (86), Expect = 0.004
Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 3/63 (4%)
Query: 11 SEFILS-FPEIFSNKSCFEVGSGVGLVGI-CLAHVKASKVTLTDGDHLTLANMRSNLELN 68
S +L P ++G G G++G+ +K+TL D + + + R NL N
Sbjct: 147 SRLLLETLPP-DLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAAN 205
Query: 69 QLS 71
+
Sbjct: 206 GVE 208
|
Length = 300 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 191 | |||
| PF10294 | 173 | Methyltransf_16: Putative methyltransferase; Inter | 99.96 | |
| KOG3201 | 201 | consensus Uncharacterized conserved protein [Funct | 99.9 | |
| COG3897 | 218 | Predicted methyltransferase [General function pred | 99.77 | |
| KOG2793 | 248 | consensus Putative N2,N2-dimethylguanosine tRNA me | 99.77 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 99.75 | |
| KOG1270 | 282 | consensus Methyltransferases [Coenzyme transport a | 99.68 | |
| PF05175 | 170 | MTS: Methyltransferase small domain; InterPro: IPR | 99.66 | |
| PLN02396 | 322 | hexaprenyldihydroxybenzoate methyltransferase | 99.62 | |
| PF13847 | 152 | Methyltransf_31: Methyltransferase domain; PDB: 3T | 99.61 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 99.61 | |
| COG4123 | 248 | Predicted O-methyltransferase [General function pr | 99.58 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 99.58 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 99.58 | |
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 99.58 | |
| COG2264 | 300 | PrmA Ribosomal protein L11 methylase [Translation, | 99.57 | |
| PLN02244 | 340 | tocopherol O-methyltransferase | 99.57 | |
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 99.57 | |
| PF08241 | 95 | Methyltransf_11: Methyltransferase domain; InterPr | 99.56 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 99.56 | |
| PF06325 | 295 | PrmA: Ribosomal protein L11 methyltransferase (Prm | 99.55 | |
| PRK15068 | 322 | tRNA mo(5)U34 methyltransferase; Provisional | 99.54 | |
| TIGR00452 | 314 | methyltransferase, putative. Known examples to dat | 99.54 | |
| PF01209 | 233 | Ubie_methyltran: ubiE/COQ5 methyltransferase famil | 99.51 | |
| PLN02233 | 261 | ubiquinone biosynthesis methyltransferase | 99.5 | |
| PRK12335 | 287 | tellurite resistance protein TehB; Provisional | 99.49 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 99.48 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 99.48 | |
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related m | 99.48 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 99.48 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me | 99.47 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 99.47 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.47 | |
| PF08242 | 99 | Methyltransf_12: Methyltransferase domain; InterPr | 99.47 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 99.47 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 99.46 | |
| PF03848 | 192 | TehB: Tellurite resistance protein TehB; InterPro: | 99.45 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 99.45 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 99.45 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 99.44 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 99.43 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 99.42 | |
| COG2813 | 300 | RsmC 16S RNA G1207 methylase RsmC [Translation, ri | 99.42 | |
| smart00828 | 224 | PKS_MT Methyltransferase in polyketide synthase (P | 99.42 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 99.42 | |
| KOG1499 | 346 | consensus Protein arginine N-methyltransferase PRM | 99.41 | |
| PF13489 | 161 | Methyltransf_23: Methyltransferase domain; PDB: 3J | 99.41 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 99.41 | |
| PRK05134 | 233 | bifunctional 3-demethylubiquinone-9 3-methyltransf | 99.41 | |
| TIGR02021 | 219 | BchM-ChlM magnesium protoporphyrin O-methyltransfe | 99.41 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 99.4 | |
| PF08003 | 315 | Methyltransf_9: Protein of unknown function (DUF16 | 99.39 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltra | 99.39 | |
| PF05401 | 201 | NodS: Nodulation protein S (NodS); InterPro: IPR00 | 99.39 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; | 99.39 | |
| TIGR00095 | 189 | RNA methyltransferase, RsmD family. This model rep | 99.39 | |
| PRK13168 | 443 | rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe | 99.37 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 99.37 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 99.37 | |
| COG2263 | 198 | Predicted RNA methylase [Translation, ribosomal st | 99.37 | |
| PF13659 | 117 | Methyltransf_26: Methyltransferase domain; PDB: 3G | 99.36 | |
| COG2890 | 280 | HemK Methylase of polypeptide chain release factor | 99.36 | |
| PRK10909 | 199 | rsmD 16S rRNA m(2)G966-methyltransferase; Provisio | 99.35 | |
| TIGR01983 | 224 | UbiG ubiquinone biosynthesis O-methyltransferase. | 99.35 | |
| PF13649 | 101 | Methyltransf_25: Methyltransferase domain; PDB: 3B | 99.35 | |
| PRK15451 | 247 | tRNA cmo(5)U34 methyltransferase; Provisional | 99.35 | |
| TIGR02072 | 240 | BioC biotin biosynthesis protein BioC. This enzyme | 99.34 | |
| KOG4300 | 252 | consensus Predicted methyltransferase [General fun | 99.34 | |
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 99.34 | |
| PLN02585 | 315 | magnesium protoporphyrin IX methyltransferase | 99.33 | |
| TIGR03533 | 284 | L3_gln_methyl protein-(glutamine-N5) methyltransfe | 99.33 | |
| PRK14966 | 423 | unknown domain/N5-glutamine S-adenosyl-L-methionin | 99.32 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 99.32 | |
| TIGR00740 | 239 | methyltransferase, putative. A simple BLAST search | 99.32 | |
| TIGR03704 | 251 | PrmC_rel_meth putative protein-(glutamine-N5) meth | 99.32 | |
| TIGR00536 | 284 | hemK_fam HemK family putative methylases. The gene | 99.31 | |
| PRK15128 | 396 | 23S rRNA m(5)C1962 methyltransferase; Provisional | 99.31 | |
| TIGR03534 | 251 | RF_mod_PrmC protein-(glutamine-N5) methyltransfera | 99.29 | |
| PRK09328 | 275 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.29 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 99.29 | |
| PRK05785 | 226 | hypothetical protein; Provisional | 99.29 | |
| TIGR03587 | 204 | Pse_Me-ase pseudaminic acid biosynthesis-associate | 99.29 | |
| PRK07580 | 230 | Mg-protoporphyrin IX methyl transferase; Validated | 99.29 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 99.28 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 99.28 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.28 | |
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 99.27 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 99.27 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 99.26 | |
| TIGR02085 | 374 | meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer | 99.25 | |
| TIGR01934 | 223 | MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis | 99.25 | |
| COG2265 | 432 | TrmA SAM-dependent methyltransferases related to t | 99.24 | |
| PRK03522 | 315 | rumB 23S rRNA methyluridine methyltransferase; Rev | 99.24 | |
| KOG1500 | 517 | consensus Protein arginine N-methyltransferase CAR | 99.24 | |
| PRK00312 | 212 | pcm protein-L-isoaspartate O-methyltransferase; Re | 99.23 | |
| PRK06202 | 232 | hypothetical protein; Provisional | 99.22 | |
| TIGR02716 | 306 | C20_methyl_CrtF C-20 methyltransferase BchU. Membe | 99.21 | |
| PRK04266 | 226 | fibrillarin; Provisional | 99.2 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 99.2 | |
| PF03602 | 183 | Cons_hypoth95: Conserved hypothetical protein 95; | 99.19 | |
| PRK06922 | 677 | hypothetical protein; Provisional | 99.19 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.18 | |
| TIGR00479 | 431 | rumA 23S rRNA (uracil-5-)-methyltransferase RumA. | 99.18 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methy | 99.18 | |
| TIGR00091 | 194 | tRNA (guanine-N(7)-)-methyltransferase. In E. coli | 99.18 | |
| KOG3010 | 261 | consensus Methyltransferase [General function pred | 99.17 | |
| KOG1540 | 296 | consensus Ubiquinone biosynthesis methyltransferas | 99.16 | |
| TIGR01177 | 329 | conserved hypothetical protein TIGR01177. This fam | 99.16 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 99.16 | |
| KOG1271 | 227 | consensus Methyltransferases [General function pre | 99.14 | |
| PRK14904 | 445 | 16S rRNA methyltransferase B; Provisional | 99.14 | |
| smart00138 | 264 | MeTrc Methyltransferase, chemotaxis proteins. Meth | 99.13 | |
| TIGR00563 | 426 | rsmB ribosomal RNA small subunit methyltransferase | 99.12 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 99.12 | |
| PRK14901 | 434 | 16S rRNA methyltransferase B; Provisional | 99.12 | |
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism | 99.12 | |
| TIGR02081 | 194 | metW methionine biosynthesis protein MetW. This pr | 99.11 | |
| COG0742 | 187 | N6-adenine-specific methylase [DNA replication, re | 99.11 | |
| PRK14902 | 444 | 16S rRNA methyltransferase B; Provisional | 99.1 | |
| PLN02781 | 234 | Probable caffeoyl-CoA O-methyltransferase | 99.1 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 99.1 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 99.1 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 99.08 | |
| PRK05031 | 362 | tRNA (uracil-5-)-methyltransferase; Validated | 99.08 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 99.08 | |
| TIGR02143 | 353 | trmA_only tRNA (uracil-5-)-methyltransferase. This | 99.08 | |
| TIGR00446 | 264 | nop2p NOL1/NOP2/sun family putative RNA methylase. | 99.07 | |
| PRK10901 | 427 | 16S rRNA methyltransferase B; Provisional | 99.07 | |
| COG2518 | 209 | Pcm Protein-L-isoaspartate carboxylmethyltransfera | 99.06 | |
| PRK14903 | 431 | 16S rRNA methyltransferase B; Provisional | 99.06 | |
| TIGR00478 | 228 | tly hemolysin TlyA family protein. Hemolysins are | 99.06 | |
| KOG2920 | 282 | consensus Predicted methyltransferase [General fun | 99.06 | |
| PF07021 | 193 | MetW: Methionine biosynthesis protein MetW; InterP | 99.06 | |
| COG2519 | 256 | GCD14 tRNA(1-methyladenosine) methyltransferase an | 99.05 | |
| PRK13943 | 322 | protein-L-isoaspartate O-methyltransferase; Provis | 99.05 | |
| KOG2904 | 328 | consensus Predicted methyltransferase [General fun | 99.05 | |
| COG4106 | 257 | Tam Trans-aconitate methyltransferase [General fun | 99.03 | |
| COG1092 | 393 | Predicted SAM-dependent methyltransferases [Genera | 99.02 | |
| PHA03411 | 279 | putative methyltransferase; Provisional | 99.02 | |
| PRK14121 | 390 | tRNA (guanine-N(7)-)-methyltransferase; Provisiona | 99.02 | |
| PTZ00146 | 293 | fibrillarin; Provisional | 99.01 | |
| COG4122 | 219 | Predicted O-methyltransferase [General function pr | 99.0 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 98.99 | |
| PRK11727 | 321 | 23S rRNA mA1618 methyltransferase; Provisional | 98.99 | |
| PRK13255 | 218 | thiopurine S-methyltransferase; Reviewed | 98.98 | |
| PF05958 | 352 | tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas | 98.98 | |
| PF05185 | 448 | PRMT5: PRMT5 arginine-N-methyltransferase; InterPr | 98.96 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 98.96 | |
| TIGR03438 | 301 | probable methyltransferase. This model represents | 98.95 | |
| smart00650 | 169 | rADc Ribosomal RNA adenine dimethylases. | 98.94 | |
| PF10672 | 286 | Methyltrans_SAM: S-adenosylmethionine-dependent me | 98.94 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 98.93 | |
| PRK11088 | 272 | rrmA 23S rRNA methyltransferase A; Provisional | 98.92 | |
| PHA03412 | 241 | putative methyltransferase; Provisional | 98.92 | |
| PLN02476 | 278 | O-methyltransferase | 98.9 | |
| KOG3420 | 185 | consensus Predicted RNA methylase [Translation, ri | 98.9 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 98.88 | |
| PRK04338 | 382 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 98.87 | |
| PF01135 | 209 | PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl | 98.87 | |
| KOG1541 | 270 | consensus Predicted protein carboxyl methylase [Ge | 98.86 | |
| TIGR00308 | 374 | TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi | 98.85 | |
| PF01596 | 205 | Methyltransf_3: O-methyltransferase; InterPro: IPR | 98.84 | |
| TIGR00417 | 270 | speE spermidine synthase. the SpeE subunit of sper | 98.82 | |
| PF08704 | 247 | GCD14: tRNA methyltransferase complex GCD14 subuni | 98.81 | |
| PRK14896 | 258 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.8 | |
| KOG3191 | 209 | consensus Predicted N6-DNA-methyltransferase [Tran | 98.79 | |
| PTZ00338 | 294 | dimethyladenosine transferase-like protein; Provis | 98.79 | |
| PF02475 | 200 | Met_10: Met-10+ like-protein; InterPro: IPR003402 | 98.78 | |
| PF05219 | 265 | DREV: DREV methyltransferase; InterPro: IPR007884 | 98.78 | |
| PRK00274 | 272 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.77 | |
| PF06080 | 204 | DUF938: Protein of unknown function (DUF938); Inte | 98.74 | |
| KOG2361 | 264 | consensus Predicted methyltransferase [General fun | 98.73 | |
| PLN02366 | 308 | spermidine synthase | 98.7 | |
| PLN02589 | 247 | caffeoyl-CoA O-methyltransferase | 98.66 | |
| COG2520 | 341 | Predicted methyltransferase [General function pred | 98.66 | |
| PRK13256 | 226 | thiopurine S-methyltransferase; Reviewed | 98.6 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 98.6 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 98.6 | |
| KOG2187 | 534 | consensus tRNA uracil-5-methyltransferase and rela | 98.58 | |
| PF00891 | 241 | Methyltransf_2: O-methyltransferase; InterPro: IPR | 98.57 | |
| PF03291 | 331 | Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 | 98.56 | |
| COG1041 | 347 | Predicted DNA modification methylase [DNA replicat | 98.56 | |
| PF09445 | 163 | Methyltransf_15: RNA cap guanine-N2 methyltransfer | 98.52 | |
| COG3963 | 194 | Phospholipid N-methyltransferase [Lipid metabolism | 98.49 | |
| TIGR00755 | 253 | ksgA dimethyladenosine transferase. Alternate name | 98.49 | |
| PF05971 | 299 | Methyltransf_10: Protein of unknown function (DUF8 | 98.48 | |
| KOG2899 | 288 | consensus Predicted methyltransferase [General fun | 98.43 | |
| PF05724 | 218 | TPMT: Thiopurine S-methyltransferase (TPMT); Inter | 98.42 | |
| PLN02823 | 336 | spermine synthase | 98.38 | |
| PF02527 | 184 | GidB: rRNA small subunit methyltransferase G; Inte | 98.36 | |
| COG4076 | 252 | Predicted RNA methylase [General function predicti | 98.34 | |
| KOG2497 | 262 | consensus Predicted methyltransferase [General fun | 98.31 | |
| PRK11933 | 470 | yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; | 98.28 | |
| PF01170 | 179 | UPF0020: Putative RNA methylase family UPF0020; In | 98.27 | |
| PF02390 | 195 | Methyltransf_4: Putative methyltransferase ; Inter | 98.26 | |
| PLN02232 | 160 | ubiquinone biosynthesis methyltransferase | 98.25 | |
| KOG2940 | 325 | consensus Predicted methyltransferase [General fun | 98.24 | |
| PHA01634 | 156 | hypothetical protein | 98.2 | |
| COG0357 | 215 | GidB Predicted S-adenosylmethionine-dependent meth | 98.18 | |
| PRK00536 | 262 | speE spermidine synthase; Provisional | 98.17 | |
| COG1189 | 245 | Predicted rRNA methylase [Translation, ribosomal s | 98.15 | |
| KOG0820 | 315 | consensus Ribosomal RNA adenine dimethylase [RNA p | 98.13 | |
| COG0030 | 259 | KsgA Dimethyladenosine transferase (rRNA methylati | 98.1 | |
| TIGR01444 | 143 | fkbM_fam methyltransferase, FkbM family. Members o | 98.08 | |
| PF01861 | 243 | DUF43: Protein of unknown function DUF43; InterPro | 98.05 | |
| KOG1975 | 389 | consensus mRNA cap methyltransferase [RNA processi | 98.05 | |
| PRK11760 | 357 | putative 23S rRNA C2498 ribose 2'-O-ribose methylt | 98.01 | |
| PF01739 | 196 | CheR: CheR methyltransferase, SAM binding domain; | 98.0 | |
| COG0220 | 227 | Predicted S-adenosylmethionine-dependent methyltra | 97.99 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 97.97 | |
| KOG1661 | 237 | consensus Protein-L-isoaspartate(D-aspartate) O-me | 97.93 | |
| COG2521 | 287 | Predicted archaeal methyltransferase [General func | 97.92 | |
| PRK10742 | 250 | putative methyltransferase; Provisional | 97.92 | |
| COG0421 | 282 | SpeE Spermidine synthase [Amino acid transport and | 97.92 | |
| PRK10611 | 287 | chemotaxis methyltransferase CheR; Provisional | 97.91 | |
| COG1352 | 268 | CheR Methylase of chemotaxis methyl-accepting prot | 97.89 | |
| PF00398 | 262 | RrnaAD: Ribosomal RNA adenine dimethylase; InterPr | 97.87 | |
| KOG1709 | 271 | consensus Guanidinoacetate methyltransferase and r | 97.87 | |
| COG0116 | 381 | Predicted N6-adenine-specific DNA methylase [DNA r | 97.86 | |
| PF01564 | 246 | Spermine_synth: Spermine/spermidine synthase; Inte | 97.84 | |
| PF08123 | 205 | DOT1: Histone methylation protein DOT1 ; InterPro: | 97.82 | |
| COG0144 | 355 | Sun tRNA and rRNA cytosine-C5-methylases [Translat | 97.79 | |
| PF12147 | 311 | Methyltransf_20: Putative methyltransferase; Inter | 97.79 | |
| PF05891 | 218 | Methyltransf_PK: AdoMet dependent proline di-methy | 97.77 | |
| KOG2915 | 314 | consensus tRNA(1-methyladenosine) methyltransferas | 97.77 | |
| PRK00050 | 296 | 16S rRNA m(4)C1402 methyltranserfase; Provisional | 97.76 | |
| KOG1501 | 636 | consensus Arginine N-methyltransferase [General fu | 97.76 | |
| PF09243 | 274 | Rsm22: Mitochondrial small ribosomal subunit Rsm22 | 97.71 | |
| PF13679 | 141 | Methyltransf_32: Methyltransferase domain | 97.66 | |
| KOG3987 | 288 | consensus Uncharacterized conserved protein DREV/C | 97.64 | |
| KOG2730 | 263 | consensus Methylase [General function prediction o | 97.63 | |
| KOG1663 | 237 | consensus O-methyltransferase [Secondary metabolit | 97.56 | |
| PF07942 | 270 | N2227: N2227-like protein; InterPro: IPR012901 Thi | 97.54 | |
| PF04816 | 205 | DUF633: Family of unknown function (DUF633) ; Inte | 97.53 | |
| PF02384 | 311 | N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T | 97.51 | |
| TIGR02987 | 524 | met_A_Alw26 type II restriction m6 adenine DNA met | 97.5 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 97.46 | |
| PF11968 | 219 | DUF3321: Putative methyltransferase (DUF3321); Int | 97.37 | |
| COG0500 | 257 | SmtA SAM-dependent methyltransferases [Secondary m | 97.33 | |
| PF01234 | 256 | NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I | 97.13 | |
| PF01269 | 229 | Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr | 97.05 | |
| COG0293 | 205 | FtsJ 23S rRNA methylase [Translation, ribosomal st | 97.03 | |
| PF05148 | 219 | Methyltransf_8: Hypothetical methyltransferase; In | 97.02 | |
| KOG1269 | 364 | consensus SAM-dependent methyltransferases [Lipid | 97.0 | |
| COG2384 | 226 | Predicted SAM-dependent methyltransferase [General | 96.98 | |
| TIGR03439 | 319 | methyl_EasF probable methyltransferase domain, Eas | 96.87 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 96.83 | |
| PF01189 | 283 | Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR | 96.8 | |
| PF01728 | 181 | FtsJ: FtsJ-like methyltransferase; InterPro: IPR00 | 96.8 | |
| KOG2352 | 482 | consensus Predicted spermine/spermidine synthase [ | 96.8 | |
| cd00315 | 275 | Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth | 96.71 | |
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 96.7 | |
| COG1889 | 231 | NOP1 Fibrillarin-like rRNA methylase [Translation, | 96.58 | |
| KOG1227 | 351 | consensus Putative methyltransferase [General func | 96.55 | |
| PF02005 | 377 | TRM: N2,N2-dimethylguanosine tRNA methyltransferas | 96.54 | |
| KOG3045 | 325 | consensus Predicted RNA methylase involved in rRNA | 96.41 | |
| KOG2078 | 495 | consensus tRNA modification enzyme [RNA processing | 96.26 | |
| COG3129 | 292 | Predicted SAM-dependent methyltransferase [General | 96.22 | |
| KOG1122 | 460 | consensus tRNA and rRNA cytosine-C5-methylase (nuc | 96.12 | |
| KOG2671 | 421 | consensus Putative RNA methylase [Replication, rec | 96.1 | |
| COG1568 | 354 | Predicted methyltransferases [General function pre | 95.99 | |
| PF01555 | 231 | N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th | 95.91 | |
| PF04445 | 234 | SAM_MT: Putative SAM-dependent methyltransferase; | 95.78 | |
| KOG3178 | 342 | consensus Hydroxyindole-O-methyltransferase and re | 95.75 | |
| COG1867 | 380 | TRM1 N2,N2-dimethylguanosine tRNA methyltransferas | 95.65 | |
| PF13578 | 106 | Methyltransf_24: Methyltransferase domain; PDB: 3S | 95.61 | |
| TIGR00006 | 305 | S-adenosyl-methyltransferase MraW. Genetics paper | 95.53 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 95.46 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 95.42 | |
| COG5459 | 484 | Predicted rRNA methylase [Translation, ribosomal s | 95.42 | |
| KOG0024 | 354 | consensus Sorbitol dehydrogenase [Secondary metabo | 95.15 | |
| PRK13699 | 227 | putative methylase; Provisional | 94.95 | |
| KOG2798 | 369 | consensus Putative trehalase [Carbohydrate transpo | 94.84 | |
| PF07091 | 251 | FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: | 94.83 | |
| PF07757 | 112 | AdoMet_MTase: Predicted AdoMet-dependent methyltra | 94.51 | |
| COG0270 | 328 | Dcm Site-specific DNA methylase [DNA replication, | 93.76 | |
| KOG2651 | 476 | consensus rRNA adenine N-6-methyltransferase [RNA | 93.72 | |
| PF00145 | 335 | DNA_methylase: C-5 cytosine-specific DNA methylase | 93.69 | |
| PF02636 | 252 | Methyltransf_28: Putative S-adenosyl-L-methionine- | 93.56 | |
| PF11599 | 246 | AviRa: RRNA methyltransferase AviRa; InterPro: IPR | 93.53 | |
| COG1565 | 370 | Uncharacterized conserved protein [Function unknow | 93.52 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 93.41 | |
| COG2961 | 279 | ComJ Protein involved in catabolism of external DN | 92.88 | |
| PF10237 | 162 | N6-adenineMlase: Probable N6-adenine methyltransfe | 92.79 | |
| COG1179 | 263 | Dinucleotide-utilizing enzymes involved in molybdo | 92.76 | |
| PF04672 | 267 | Methyltransf_19: S-adenosyl methyltransferase; Int | 92.66 | |
| KOG4058 | 199 | consensus Uncharacterized conserved protein [Funct | 92.65 | |
| cd00755 | 231 | YgdL_like Family of activating enzymes (E1) of ubi | 92.4 | |
| PRK12548 | 289 | shikimate 5-dehydrogenase; Provisional | 91.91 | |
| PF03686 | 127 | UPF0146: Uncharacterised protein family (UPF0146); | 91.73 | |
| COG1255 | 129 | Uncharacterized protein conserved in archaea [Func | 91.61 | |
| TIGR02356 | 202 | adenyl_thiF thiazole biosynthesis adenylyltransfer | 91.54 | |
| KOG1253 | 525 | consensus tRNA methyltransferase [Translation, rib | 91.47 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 91.45 | |
| TIGR02354 | 200 | thiF_fam2 thiamine biosynthesis protein ThiF, fami | 91.0 | |
| TIGR00675 | 315 | dcm DNA-methyltransferase (dcm). All proteins in t | 90.6 | |
| KOG2018 | 430 | consensus Predicted dinucleotide-utilizing enzyme | 90.33 | |
| cd01487 | 174 | E1_ThiF_like E1_ThiF_like. Member of superfamily o | 90.29 | |
| PF02086 | 260 | MethyltransfD12: D12 class N6 adenine-specific DNA | 90.09 | |
| COG0286 | 489 | HsdM Type I restriction-modification system methyl | 89.64 | |
| KOG4589 | 232 | consensus Cell division protein FtsJ [Cell cycle c | 89.45 | |
| PRK15116 | 268 | sulfur acceptor protein CsdL; Provisional | 89.44 | |
| KOG1596 | 317 | consensus Fibrillarin and related nucleolar RNA-bi | 89.14 | |
| PRK06124 | 256 | gluconate 5-dehydrogenase; Provisional | 89.01 | |
| PRK12475 | 338 | thiamine/molybdopterin biosynthesis MoeB-like prot | 88.94 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 88.46 | |
| cd00757 | 228 | ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1 | 88.34 | |
| COG1063 | 350 | Tdh Threonine dehydrogenase and related Zn-depende | 88.29 | |
| PRK08644 | 212 | thiamine biosynthesis protein ThiF; Provisional | 88.2 | |
| KOG2912 | 419 | consensus Predicted DNA methylase [Function unknow | 87.82 | |
| PRK07688 | 339 | thiamine/molybdopterin biosynthesis ThiF/MoeB-like | 87.55 | |
| PRK05708 | 305 | 2-dehydropantoate 2-reductase; Provisional | 87.43 | |
| PF11899 | 380 | DUF3419: Protein of unknown function (DUF3419); In | 87.39 | |
| cd01483 | 143 | E1_enzyme_family Superfamily of activating enzymes | 87.35 | |
| PF06962 | 140 | rRNA_methylase: Putative rRNA methylase; InterPro: | 87.27 | |
| PF04989 | 206 | CmcI: Cephalosporin hydroxylase; InterPro: IPR0070 | 87.22 | |
| PRK10458 | 467 | DNA cytosine methylase; Provisional | 87.19 | |
| PLN02668 | 386 | indole-3-acetate carboxyl methyltransferase | 87.0 | |
| cd01491 | 286 | Ube1_repeat1 Ubiquitin activating enzyme (E1), rep | 86.47 | |
| KOG0725 | 270 | consensus Reductases with broad range of substrate | 86.37 | |
| COG1748 | 389 | LYS9 Saccharopine dehydrogenase and related protei | 86.35 | |
| KOG1331 | 293 | consensus Predicted methyltransferase [General fun | 86.33 | |
| PRK07904 | 253 | short chain dehydrogenase; Provisional | 86.07 | |
| PF02737 | 180 | 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind | 86.04 | |
| PF05206 | 259 | TRM13: Methyltransferase TRM13; InterPro: IPR00787 | 86.01 | |
| PRK08339 | 263 | short chain dehydrogenase; Provisional | 86.01 | |
| KOG2539 | 491 | consensus Mitochondrial/chloroplast ribosome small | 85.92 | |
| PRK08762 | 376 | molybdopterin biosynthesis protein MoeB; Validated | 85.75 | |
| PRK07109 | 334 | short chain dehydrogenase; Provisional | 85.65 | |
| PRK12749 | 288 | quinate/shikimate dehydrogenase; Reviewed | 85.59 | |
| COG0275 | 314 | Predicted S-adenosylmethionine-dependent methyltra | 84.98 | |
| COG0863 | 302 | DNA modification methylase [DNA replication, recom | 84.43 | |
| PRK05597 | 355 | molybdopterin biosynthesis protein MoeB; Validated | 84.43 | |
| KOG3115 | 249 | consensus Methyltransferase-like protein [General | 84.08 | |
| cd08283 | 386 | FDH_like_1 Glutathione-dependent formaldehyde dehy | 83.67 | |
| PRK07523 | 255 | gluconate 5-dehydrogenase; Provisional | 83.65 | |
| PRK08085 | 254 | gluconate 5-dehydrogenase; Provisional | 83.63 | |
| KOG1201 | 300 | consensus Hydroxysteroid 17-beta dehydrogenase 11 | 83.56 | |
| PF03721 | 185 | UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen | 83.28 | |
| cd01488 | 291 | Uba3_RUB Ubiquitin activating enzyme (E1) subunit | 83.15 | |
| COG4301 | 321 | Uncharacterized conserved protein [Function unknow | 82.8 | |
| COG3392 | 330 | Adenine-specific DNA methylase [DNA replication, r | 82.38 | |
| KOG3924 | 419 | consensus Putative protein methyltransferase invol | 82.36 | |
| PRK05600 | 370 | thiamine biosynthesis protein ThiF; Validated | 82.31 | |
| PRK01438 | 480 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 82.31 | |
| PF05050 | 167 | Methyltransf_21: Methyltransferase FkbM domain; In | 82.16 | |
| PF01488 | 135 | Shikimate_DH: Shikimate / quinate 5-dehydrogenase; | 82.14 | |
| PRK00258 | 278 | aroE shikimate 5-dehydrogenase; Reviewed | 82.1 | |
| PF03492 | 334 | Methyltransf_7: SAM dependent carboxyl methyltrans | 81.78 | |
| TIGR00027 | 260 | mthyl_TIGR00027 methyltransferase, putative, TIGR0 | 81.5 | |
| cd01492 | 197 | Aos1_SUMO Ubiquitin activating enzyme (E1) subunit | 81.32 | |
| PRK08267 | 260 | short chain dehydrogenase; Provisional | 81.16 | |
| PRK06153 | 393 | hypothetical protein; Provisional | 81.09 | |
| PRK05650 | 270 | short chain dehydrogenase; Provisional | 80.84 | |
| PF00106 | 167 | adh_short: short chain dehydrogenase alcohol dehyd | 80.49 | |
| COG1004 | 414 | Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en | 80.4 | |
| cd01485 | 198 | E1-1_like Ubiquitin activating enzyme (E1), repeat | 80.37 | |
| PRK05867 | 253 | short chain dehydrogenase; Provisional | 80.31 |
| >PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.8e-30 Score=190.75 Aligned_cols=125 Identities=38% Similarity=0.622 Sum_probs=89.6
Q ss_pred CcccccHHHHHHHHhhC------CCCCCCCcEEEeCCCccHHHHHHHhc-CCCeEEEEcCChHHHHHHHHHHHHhcCCCC
Q 038343 1 CSIWPSSLLLSEFILSF------PEIFSNKSCFEVGSGVGLVGICLAHV-KASKVTLTDGDHLTLANMRSNLELNQLSTD 73 (191)
Q Consensus 1 ~~~W~~a~~L~~~l~~~------~~~~~~~~VLElG~GtG~~~~~la~~-g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~ 73 (191)
+.+||++.+|++|+.+. ...+++++|||||||+|++|+.++++ ++.+|++||+++ +++.++.|++.|+..
T Consensus 18 ~~vW~aa~~La~~l~~~~~~~~~~~~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~-- 94 (173)
T PF10294_consen 18 GKVWPAALVLARYLLSHSESEFNPELFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSL-- 94 (173)
T ss_dssp -----HHHHHHHHHHH-------GGGTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT-----
T ss_pred EEEechHHHHHHHHHHhcccccchhhcCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhcccc--
Confidence 36899999999999984 56778999999999999999999998 667999999987 999999999999732
Q ss_pred cccccccCCCCeeEEEeecCCCCCcC-CCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCC
Q 038343 74 TSLLESYEDPNVVQCVHLPWESASES-GLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRK 136 (191)
Q Consensus 74 ~~~~~~~~~~~~i~~~~ldw~~~~~~-~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g 136 (191)
...++.+..++|++.... .....+||+|+++||+|+...+++|++++++++++++
T Consensus 95 --------~~~~v~v~~L~Wg~~~~~~~~~~~~~D~IlasDv~Y~~~~~~~L~~tl~~ll~~~~ 150 (173)
T PF10294_consen 95 --------LDGRVSVRPLDWGDELDSDLLEPHSFDVILASDVLYDEELFEPLVRTLKRLLKPNG 150 (173)
T ss_dssp -------------EEEE--TTS-HHHHHHS-SSBSEEEEES--S-GGGHHHHHHHHHHHBTT-T
T ss_pred --------ccccccCcEEEecCcccccccccccCCEEEEecccchHHHHHHHHHHHHHHhCCCC
Confidence 125789999999975422 2344689999999999999999999999999999995
|
They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A. |
| >KOG3201 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.1e-24 Score=154.85 Aligned_cols=144 Identities=26% Similarity=0.300 Sum_probs=118.7
Q ss_pred cccccHHHHHHHHhhCCCCCCCCcEEEeCCC-ccHHHHHHHhc-CCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccc
Q 038343 2 SIWPSSLLLSEFILSFPEIFSNKSCFEVGSG-VGLVGICLAHV-KASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLES 79 (191)
Q Consensus 2 ~~W~~a~~L~~~l~~~~~~~~~~~VLElG~G-tG~~~~~la~~-g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~ 79 (191)
++||+...|+.++.+.+..+++++|||||.| +|+.|+++|.. ..+.|.+||.+++.++++++.+..|....-
T Consensus 9 ciwpseeala~~~l~~~n~~rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~------ 82 (201)
T KOG3201|consen 9 CIWPSEEALAWTILRDPNKIRGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSL------ 82 (201)
T ss_pred EecccHHHHHHHHHhchhHHhHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhccccccc------
Confidence 5899999999999999999999999999999 99999988765 346999999999999999998888854311
Q ss_pred cCCCCeeEEEeecCCCCCcCCCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCccccccCCCCcccccccCCC
Q 038343 80 YEDPNVVQCVHLPWESASESGLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVSSSRKESSKGFTLDTKCNTN 158 (191)
Q Consensus 80 ~~~~~~i~~~~ldw~~~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~~~~~~~~~~~~~~~~~~~~ 158 (191)
..+.+....|.... ++.+...||+|+|+||++..+..++|+++|+.+|+|.|+ +++++|+|++||++|...-
T Consensus 83 ----tsc~vlrw~~~~aq-sq~eq~tFDiIlaADClFfdE~h~sLvdtIk~lL~p~g~--Al~fsPRRg~sL~kF~de~ 154 (201)
T KOG3201|consen 83 ----TSCCVLRWLIWGAQ-SQQEQHTFDIILAADCLFFDEHHESLVDTIKSLLRPSGR--ALLFSPRRGQSLQKFLDEV 154 (201)
T ss_pred ----ceehhhHHHHhhhH-HHHhhCcccEEEeccchhHHHHHHHHHHHHHHHhCcccc--eeEecCcccchHHHHHHHH
Confidence 12333333333221 123345899999999999999999999999999999987 7889999999999997763
|
|
| >COG3897 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=8.4e-19 Score=128.72 Aligned_cols=128 Identities=22% Similarity=0.337 Sum_probs=107.4
Q ss_pred CcccccHHHHHHHHhhCCCCCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCccccccc
Q 038343 1 CSIWPSSLLLSEFILSFPEIFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESY 80 (191)
Q Consensus 1 ~~~W~~a~~L~~~l~~~~~~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~ 80 (191)
|..|-+++.|++|+..+++..++++|||+|+|+|+.++..++.|++.|+.+|+++.....++.|++.|+..
T Consensus 58 a~~WagG~~lAR~i~~~PetVrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv~--------- 128 (218)
T COG3897 58 AFAWAGGQVLARYIDDHPETVRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGVS--------- 128 (218)
T ss_pred HHHHhhhHHHHHHHhcCccccccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhccce---------
Confidence 35799999999999999999999999999999999999999999999999999999999999999999854
Q ss_pred CCCCeeEEEeecCCCCCcCCCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCccccccCCCCcc
Q 038343 81 EDPNVVQCVHLPWESASESGLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVSSSRKESSKGFT 150 (191)
Q Consensus 81 ~~~~~i~~~~ldw~~~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~~~~~~~~~~~~ 150 (191)
+.+...|..- ++..||+|+++|++|+......++....++...| ...+++.|.|..-
T Consensus 129 -----i~~~~~d~~g------~~~~~Dl~LagDlfy~~~~a~~l~~~~~~l~~~g--~~vlvgdp~R~~l 185 (218)
T COG3897 129 -----ILFTHADLIG------SPPAFDLLLAGDLFYNHTEADRLIPWKDRLAEAG--AAVLVGDPGRAYL 185 (218)
T ss_pred -----eEEeeccccC------CCcceeEEEeeceecCchHHHHHHHHHHHHHhCC--CEEEEeCCCCCCC
Confidence 4444444322 2357999999999999999999999666665555 4556777776544
|
|
| >KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.8e-18 Score=130.82 Aligned_cols=144 Identities=25% Similarity=0.391 Sum_probs=114.9
Q ss_pred cccccHHHHHHHHhhCCC------CCC-----CCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcC
Q 038343 2 SIWPSSLLLSEFILSFPE------IFS-----NKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQL 70 (191)
Q Consensus 2 ~~W~~a~~L~~~l~~~~~------~~~-----~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~ 70 (191)
.+|+++..+++++..+.. ... ..+|||||+|||+.|+.++......|..+|. +..+..++.|...|+.
T Consensus 55 ~~w~~~~~la~~~~~~~~~~~~~~~~~g~~~~~~~vlELGsGtglvG~~aa~~~~~~v~ltD~-~~~~~~L~~~~~~~~~ 133 (248)
T KOG2793|consen 55 YLWSCATTLAQPLWERRRDSELTATLIGFKTKYINVLELGSGTGLVGILAALLLGAEVVLTDL-PKVVENLKFNRDKNNI 133 (248)
T ss_pred EEeehhhccchhhhhhhcCchhhhccccccccceeEEEecCCccHHHHHHHHHhcceeccCCc-hhhHHHHHHhhhhhhh
Confidence 479999999998876543 222 3469999999999999888854459999999 7888888888777765
Q ss_pred CCCcccccccCCCCeeEEEeecCCCCCcCCCCCCC-CCEEEEcccccCCCChHHHHHHHHHHhccCCCCccccccCCCCc
Q 038343 71 STDTSLLESYEDPNVVQCVHLPWESASESGLSAFV-PEIILGADILYDRSCFPDLVRILAILLNRRKSVSSSRKESSKGF 149 (191)
Q Consensus 71 ~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~~~~~~-fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~~~~~~~~~~~ 149 (191)
.... ....+.+..++|+........... +|+|+++||+|++..++.++.+++.+|..++
T Consensus 134 ~l~~-------~g~~v~v~~L~Wg~~~~~~~~~~~~~DlilasDvvy~~~~~e~Lv~tla~ll~~~~------------- 193 (248)
T KOG2793|consen 134 ALNQ-------LGGSVIVAILVWGNALDVSFRLPNPFDLILASDVVYEEESFEGLVKTLAFLLAKDG------------- 193 (248)
T ss_pred hhhh-------cCCceeEEEEecCCcccHhhccCCcccEEEEeeeeecCCcchhHHHHHHHHHhcCC-------------
Confidence 4321 224789999999988765433334 9999999999999999999999999999994
Q ss_pred ccccccCCCCccccccccCCCCEEEEEecccCHHHHHHh
Q 038343 150 TLDTKCNTNDLNDLTAVTSKGPVAYIATVIRNIDTFNYF 188 (191)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~va~~~r~~~~~~~f 188 (191)
.+++++..|....++.+
T Consensus 194 ----------------------~i~l~~~lr~~~~~~~~ 210 (248)
T KOG2793|consen 194 ----------------------TIFLAYPLRRDAAWEIE 210 (248)
T ss_pred ----------------------eEEEEEecccchHHHHH
Confidence 38999999987666554
|
|
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.75 E-value=5.7e-18 Score=128.67 Aligned_cols=98 Identities=15% Similarity=0.136 Sum_probs=81.7
Q ss_pred CCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCC
Q 038343 21 FSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESG 100 (191)
Q Consensus 21 ~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~ 100 (191)
+++++|||+|||.|.++..+|+.|+ +|+++|.++.+++.++.....++... .+.....++..
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~Ga-~VtgiD~se~~I~~Ak~ha~e~gv~i--------------~y~~~~~edl~--- 119 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARLGA-SVTGIDASEKPIEVAKLHALESGVNI--------------DYRQATVEDLA--- 119 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHHCCC-eeEEecCChHHHHHHHHhhhhccccc--------------cchhhhHHHHH---
Confidence 5889999999999999999999997 99999999999999999988887542 22222222111
Q ss_pred CCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCC
Q 038343 101 LSAFVPEIILGADILYDRSCFPDLVRILAILLNRRK 136 (191)
Q Consensus 101 ~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g 136 (191)
...++||+|+|.+|+.|.++.+.+++.+.+++||+|
T Consensus 120 ~~~~~FDvV~cmEVlEHv~dp~~~~~~c~~lvkP~G 155 (243)
T COG2227 120 SAGGQFDVVTCMEVLEHVPDPESFLRACAKLVKPGG 155 (243)
T ss_pred hcCCCccEEEEhhHHHccCCHHHHHHHHHHHcCCCc
Confidence 122689999999999999999999999999999996
|
|
| >KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.2e-16 Score=122.52 Aligned_cols=101 Identities=16% Similarity=0.156 Sum_probs=78.5
Q ss_pred CCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCCCC
Q 038343 23 NKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESGLS 102 (191)
Q Consensus 23 ~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~~~ 102 (191)
|++|||+|||+|+++..+|++|+ .|+++|.++.+++.+++....+...... ..-++.+...+.+...
T Consensus 90 g~~ilDvGCGgGLLSepLArlga-~V~GID~s~~~V~vA~~h~~~dP~~~~~-------~~y~l~~~~~~~E~~~----- 156 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLGA-QVTGIDASDDMVEVANEHKKMDPVLEGA-------IAYRLEYEDTDVEGLT----- 156 (282)
T ss_pred CceEEEeccCccccchhhHhhCC-eeEeecccHHHHHHHHHhhhcCchhccc-------cceeeehhhcchhhcc-----
Confidence 57899999999999999999997 9999999999999999885444332110 0012333333333221
Q ss_pred CCCCCEEEEcccccCCCChHHHHHHHHHHhccCCC
Q 038343 103 AFVPEIILGADILYDRSCFPDLVRILAILLNRRKS 137 (191)
Q Consensus 103 ~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~ 137 (191)
+.||.|+|++++.|..++..+++.+.++|+|+|.
T Consensus 157 -~~fDaVvcsevleHV~dp~~~l~~l~~~lkP~G~ 190 (282)
T KOG1270|consen 157 -GKFDAVVCSEVLEHVKDPQEFLNCLSALLKPNGR 190 (282)
T ss_pred -cccceeeeHHHHHHHhCHHHHHHHHHHHhCCCCc
Confidence 4699999999999999999999999999999964
|
|
| >PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.1e-15 Score=113.12 Aligned_cols=111 Identities=21% Similarity=0.211 Sum_probs=89.4
Q ss_pred cHHHHHHHHhhCCCCCCCCcEEEeCCCccHHHHHHHhcCCC-eEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCC
Q 038343 6 SSLLLSEFILSFPEIFSNKSCFEVGSGVGLVGICLAHVKAS-KVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPN 84 (191)
Q Consensus 6 ~a~~L~~~l~~~~~~~~~~~VLElG~GtG~~~~~la~~g~~-~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~ 84 (191)
++..|.+++... ++.+|||+|||+|.+++.+++.+.. +|+++|+++.+++.+++|++.|+.. .
T Consensus 19 ~t~lL~~~l~~~----~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~------------~ 82 (170)
T PF05175_consen 19 GTRLLLDNLPKH----KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLE------------N 82 (170)
T ss_dssp HHHHHHHHHHHH----TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCT------------T
T ss_pred HHHHHHHHHhhc----cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCcc------------c
Confidence 567788877665 5668999999999999999998765 7999999999999999999999865 3
Q ss_pred eeEEEeecCCCCCcCCCCCCCCCEEEEcccccCCCC-----hHHHHHHHHHHhccCCC
Q 038343 85 VVQCVHLPWESASESGLSAFVPEIILGADILYDRSC-----FPDLVRILAILLNRRKS 137 (191)
Q Consensus 85 ~i~~~~ldw~~~~~~~~~~~~fDvIi~~d~ly~~~~-----~~~ll~~l~~ll~~~g~ 137 (191)
+.+...|+.+.. ...+||+|+++..++.... ...+++...++|+|+|.
T Consensus 83 -v~~~~~d~~~~~----~~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~ 135 (170)
T PF05175_consen 83 -VEVVQSDLFEAL----PDGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGR 135 (170)
T ss_dssp -EEEEESSTTTTC----CTTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEE
T ss_pred -cccccccccccc----cccceeEEEEccchhcccccchhhHHHHHHHHHHhccCCCE
Confidence 777777775543 3468999999988776553 68889999999999975
|
; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A .... |
| >PLN02396 hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Probab=99.62 E-value=5.5e-15 Score=119.22 Aligned_cols=103 Identities=16% Similarity=0.201 Sum_probs=83.1
Q ss_pred CCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCC
Q 038343 21 FSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESG 100 (191)
Q Consensus 21 ~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~ 100 (191)
.++.+|||+|||+|.++..+++.|. +|+++|.++++++.++++...+... .++.+...+.++..
T Consensus 130 ~~g~~ILDIGCG~G~~s~~La~~g~-~V~GID~s~~~i~~Ar~~~~~~~~~------------~~i~~~~~dae~l~--- 193 (322)
T PLN02396 130 FEGLKFIDIGCGGGLLSEPLARMGA-TVTGVDAVDKNVKIARLHADMDPVT------------STIEYLCTTAEKLA--- 193 (322)
T ss_pred CCCCEEEEeeCCCCHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCcc------------cceeEEecCHHHhh---
Confidence 4677999999999999999998876 8999999999999999876654422 24555555543321
Q ss_pred CCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCc
Q 038343 101 LSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVS 139 (191)
Q Consensus 101 ~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~ 139 (191)
..+++||+|++.+++++..+.+.+++.+.++|+|||...
T Consensus 194 ~~~~~FD~Vi~~~vLeHv~d~~~~L~~l~r~LkPGG~li 232 (322)
T PLN02396 194 DEGRKFDAVLSLEVIEHVANPAEFCKSLSALTIPNGATV 232 (322)
T ss_pred hccCCCCEEEEhhHHHhcCCHHHHHHHHHHHcCCCcEEE
Confidence 234689999999999999999999999999999998544
|
|
| >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.3e-14 Score=105.36 Aligned_cols=100 Identities=19% Similarity=0.203 Sum_probs=84.7
Q ss_pred CCCcEEEeCCCccHHHHHHH-hcC-CCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcC
Q 038343 22 SNKSCFEVGSGVGLVGICLA-HVK-ASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASES 99 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la-~~g-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~ 99 (191)
++.+|||+|||+|..+..++ ..+ ..+|+++|+++.+++.++++++.++.. ++.+...|+.+....
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~-------------ni~~~~~d~~~l~~~ 69 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLD-------------NIEFIQGDIEDLPQE 69 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTST-------------TEEEEESBTTCGCGC
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccccccc-------------ccceEEeehhccccc
Confidence 46799999999999999888 443 348999999999999999998888754 588899998874322
Q ss_pred CCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCC
Q 038343 100 GLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRK 136 (191)
Q Consensus 100 ~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g 136 (191)
++ .+||+|++..++++..+...+++.+.++|+++|
T Consensus 70 -~~-~~~D~I~~~~~l~~~~~~~~~l~~~~~~lk~~G 104 (152)
T PF13847_consen 70 -LE-EKFDIIISNGVLHHFPDPEKVLKNIIRLLKPGG 104 (152)
T ss_dssp -SS-TTEEEEEEESTGGGTSHHHHHHHHHHHHEEEEE
T ss_pred -cC-CCeeEEEEcCchhhccCHHHHHHHHHHHcCCCc
Confidence 33 689999999999999999999999999999997
|
... |
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=99.61 E-value=5.1e-15 Score=101.68 Aligned_cols=100 Identities=16% Similarity=0.097 Sum_probs=77.4
Q ss_pred CCCcEEEeCCCccHHHHHHHh-cCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCC
Q 038343 22 SNKSCFEVGSGVGLVGICLAH-VKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESG 100 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~-~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~ 100 (191)
|+.+|||||||+|..++.+++ ....+|+++|+++.+++.+++++...... .++.+...|+ ....
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~------------~~i~~~~~d~-~~~~-- 65 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLS------------DRITFVQGDA-EFDP-- 65 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTT------------TTEEEEESCC-HGGT--
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCC------------CCeEEEECcc-ccCc--
Confidence 577999999999999999888 23348999999999999999999665543 5788888888 1111
Q ss_pred CCCCCCCEEEEcc-cccCC---CChHHHHHHHHHHhccCC
Q 038343 101 LSAFVPEIILGAD-ILYDR---SCFPDLVRILAILLNRRK 136 (191)
Q Consensus 101 ~~~~~fDvIi~~d-~ly~~---~~~~~ll~~l~~ll~~~g 136 (191)
....+||+|++.. ++.+. +....+++.+.+.|+|+|
T Consensus 66 ~~~~~~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG 105 (112)
T PF12847_consen 66 DFLEPFDLVICSGFTLHFLLPLDERRRVLERIRRLLKPGG 105 (112)
T ss_dssp TTSSCEEEEEECSGSGGGCCHHHHHHHHHHHHHHHEEEEE
T ss_pred ccCCCCCEEEECCCccccccchhHHHHHHHHHHHhcCCCc
Confidence 1224699999988 33322 346788999999999996
|
... |
| >COG4123 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.58 E-value=3.2e-14 Score=109.72 Aligned_cols=117 Identities=20% Similarity=0.275 Sum_probs=94.1
Q ss_pred HHHHHHHHhhCCCCCCCCcEEEeCCCccHHHHHHHhc-CCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCe
Q 038343 7 SLLLSEFILSFPEIFSNKSCFEVGSGVGLVGICLAHV-KASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNV 85 (191)
Q Consensus 7 a~~L~~~l~~~~~~~~~~~VLElG~GtG~~~~~la~~-g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~ 85 (191)
+..|+.|+... ...+|||||||+|++++++++. ...+++++|+++.+.+.+++|++.|.+. .+
T Consensus 33 aiLL~~~~~~~----~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~------------~r 96 (248)
T COG4123 33 AILLAAFAPVP----KKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLE------------ER 96 (248)
T ss_pred HHHHHhhcccc----cCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcch------------hc
Confidence 56677775322 3669999999999999999887 4359999999999999999999999876 68
Q ss_pred eEEEeecCCCCCcCCCCCCCCCEEEEcccccCCC------------------ChHHHHHHHHHHhccCCCCcc
Q 038343 86 VQCVHLPWESASESGLSAFVPEIILGADILYDRS------------------CFPDLVRILAILLNRRKSVSS 140 (191)
Q Consensus 86 i~~~~ldw~~~~~~~~~~~~fDvIi~~d~ly~~~------------------~~~~ll~~l~~ll~~~g~~~~ 140 (191)
+++.+.|..+.... ....+||+|+|+..+|... +++.+++...++||++|..+.
T Consensus 97 i~v~~~Di~~~~~~-~~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~ 168 (248)
T COG4123 97 IQVIEADIKEFLKA-LVFASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAF 168 (248)
T ss_pred eeEehhhHHHhhhc-ccccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEE
Confidence 89999887665432 2234799999999988543 378999999999999986443
|
|
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
Probab=99.58 E-value=9.8e-14 Score=103.38 Aligned_cols=107 Identities=21% Similarity=0.224 Sum_probs=81.5
Q ss_pred HHHHHHHHhhCCCCCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCee
Q 038343 7 SLLLSEFILSFPEIFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVV 86 (191)
Q Consensus 7 a~~L~~~l~~~~~~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i 86 (191)
+..|.+++.. .++.+|||+|||+|..++.++..+. +|+++|+++.+++.+++|+..++. ++
T Consensus 8 ~~~l~~~l~~----~~~~~vLdlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~--------------~~ 68 (179)
T TIGR00537 8 SLLLEANLRE----LKPDDVLEIGAGTGLVAIRLKGKGK-CILTTDINPFAVKELRENAKLNNV--------------GL 68 (179)
T ss_pred HHHHHHHHHh----cCCCeEEEeCCChhHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHHcCC--------------ce
Confidence 3445555432 3456899999999999999998877 899999999999999999988763 35
Q ss_pred EEEeecCCCCCcCCCCCCCCCEEEEcccccCCCC---------------------hHHHHHHHHHHhccCCC
Q 038343 87 QCVHLPWESASESGLSAFVPEIILGADILYDRSC---------------------FPDLVRILAILLNRRKS 137 (191)
Q Consensus 87 ~~~~ldw~~~~~~~~~~~~fDvIi~~d~ly~~~~---------------------~~~ll~~l~~ll~~~g~ 137 (191)
.+...|+.+.. .++||+|+++.+++.... .+.+++.+.++|+|+|.
T Consensus 69 ~~~~~d~~~~~-----~~~fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~ 135 (179)
T TIGR00537 69 DVVMTDLFKGV-----RGKFDVILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGR 135 (179)
T ss_pred EEEEccccccc-----CCcccEEEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCE
Confidence 56666664432 247999999877654322 45679999999999974
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. |
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=3.3e-14 Score=107.57 Aligned_cols=101 Identities=16% Similarity=0.155 Sum_probs=81.3
Q ss_pred CCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCC
Q 038343 21 FSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESG 100 (191)
Q Consensus 21 ~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~ 100 (191)
.++.+|||+|||+|..++.+++.|. +|+++|+++.+++.+++++..++.. ++.+...|+.+..
T Consensus 29 ~~~~~vLDiGcG~G~~a~~La~~g~-~V~gvD~S~~~i~~a~~~~~~~~~~-------------~v~~~~~d~~~~~--- 91 (197)
T PRK11207 29 VKPGKTLDLGCGNGRNSLYLAANGF-DVTAWDKNPMSIANLERIKAAENLD-------------NLHTAVVDLNNLT--- 91 (197)
T ss_pred CCCCcEEEECCCCCHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHcCCC-------------cceEEecChhhCC---
Confidence 4567999999999999999999876 8999999999999999988876643 2555555654331
Q ss_pred CCCCCCCEEEEcccccCC--CChHHHHHHHHHHhccCCCCc
Q 038343 101 LSAFVPEIILGADILYDR--SCFPDLVRILAILLNRRKSVS 139 (191)
Q Consensus 101 ~~~~~fDvIi~~d~ly~~--~~~~~ll~~l~~ll~~~g~~~ 139 (191)
+ ..+||+|+++.++|+. .....+++.+.++|+|+|...
T Consensus 92 ~-~~~fD~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~ 131 (197)
T PRK11207 92 F-DGEYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNL 131 (197)
T ss_pred c-CCCcCEEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEE
Confidence 2 2479999999998754 367899999999999999743
|
|
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=2e-14 Score=112.89 Aligned_cols=106 Identities=18% Similarity=0.146 Sum_probs=86.8
Q ss_pred CCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCCC
Q 038343 22 SNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESGL 101 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~~ 101 (191)
++.+|||+|||+|..+..+++.|. +|+++|+++++++.+++++...+.. .++.+...+..+... .
T Consensus 44 ~~~~vLDiGcG~G~~a~~la~~g~-~v~~vD~s~~~l~~a~~~~~~~g~~------------~~v~~~~~d~~~l~~--~ 108 (255)
T PRK11036 44 RPLRVLDAGGGEGQTAIKLAELGH-QVILCDLSAEMIQRAKQAAEAKGVS------------DNMQFIHCAAQDIAQ--H 108 (255)
T ss_pred CCCEEEEeCCCchHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCc------------cceEEEEcCHHHHhh--h
Confidence 456999999999999999999876 8999999999999999998877643 346666665543221 2
Q ss_pred CCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCcccc
Q 038343 102 SAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVSSSR 142 (191)
Q Consensus 102 ~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~~~~ 142 (191)
..++||+|++..++++..+...+++.+.++|+|||....++
T Consensus 109 ~~~~fD~V~~~~vl~~~~~~~~~l~~~~~~LkpgG~l~i~~ 149 (255)
T PRK11036 109 LETPVDLILFHAVLEWVADPKSVLQTLWSVLRPGGALSLMF 149 (255)
T ss_pred cCCCCCEEEehhHHHhhCCHHHHHHHHHHHcCCCeEEEEEE
Confidence 34689999999999999999999999999999999775543
|
|
| >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.1e-14 Score=113.55 Aligned_cols=110 Identities=23% Similarity=0.228 Sum_probs=79.9
Q ss_pred HHHHHHHHhhCCCCCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCee
Q 038343 7 SLLLSEFILSFPEIFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVV 86 (191)
Q Consensus 7 a~~L~~~l~~~~~~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i 86 (191)
+..-.+++.+... ++++|||+|||||++++.++++|+++|+++|++|.+++.+++|+..|+... .+
T Consensus 149 T~lcL~~Le~~~~--~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~------------~~ 214 (300)
T COG2264 149 TSLCLEALEKLLK--KGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVEL------------LV 214 (300)
T ss_pred HHHHHHHHHHhhc--CCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcCCch------------hh
Confidence 3333445544332 788999999999999999999999999999999999999999999999751 11
Q ss_pred EEEeecCCCCCcCCCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCC
Q 038343 87 QCVHLPWESASESGLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKS 137 (191)
Q Consensus 87 ~~~~ldw~~~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~ 137 (191)
......-. .....++||+|+|+= + ..-+..+...+..+++|+|.
T Consensus 215 ~~~~~~~~----~~~~~~~~DvIVANI-L--A~vl~~La~~~~~~lkpgg~ 258 (300)
T COG2264 215 QAKGFLLL----EVPENGPFDVIVANI-L--AEVLVELAPDIKRLLKPGGR 258 (300)
T ss_pred hcccccch----hhcccCcccEEEehh-h--HHHHHHHHHHHHHHcCCCce
Confidence 11111111 112335899999952 2 22356788899999999874
|
|
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.57 E-value=6.5e-14 Score=114.27 Aligned_cols=105 Identities=15% Similarity=0.014 Sum_probs=87.2
Q ss_pred CCCCcEEEeCCCccHHHHHHHhc-CCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcC
Q 038343 21 FSNKSCFEVGSGVGLVGICLAHV-KASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASES 99 (191)
Q Consensus 21 ~~~~~VLElG~GtG~~~~~la~~-g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~ 99 (191)
.++.+|||+|||+|..+..+++. ++ +|+++|+++.+++.++++++.++.. .++.+...|..+.
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~g~-~v~gvD~s~~~i~~a~~~~~~~g~~------------~~v~~~~~D~~~~--- 180 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKYGA-NVKGITLSPVQAARANALAAAQGLS------------DKVSFQVADALNQ--- 180 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHhcCCC------------CceEEEEcCcccC---
Confidence 46779999999999999988875 55 9999999999999999988877653 3577777776543
Q ss_pred CCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCccc
Q 038343 100 GLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVSSS 141 (191)
Q Consensus 100 ~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~~~ 141 (191)
.+.+++||+|++..++++..+...+++.+.++|+|||.....
T Consensus 181 ~~~~~~FD~V~s~~~~~h~~d~~~~l~e~~rvLkpGG~lvi~ 222 (340)
T PLN02244 181 PFEDGQFDLVWSMESGEHMPDKRKFVQELARVAAPGGRIIIV 222 (340)
T ss_pred CCCCCCccEEEECCchhccCCHHHHHHHHHHHcCCCcEEEEE
Confidence 245578999999999999999999999999999999875543
|
|
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.57 E-value=3.4e-14 Score=109.46 Aligned_cols=110 Identities=14% Similarity=0.064 Sum_probs=92.2
Q ss_pred CCCcEEEeCCCccHHHHHHHhc-CCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCC
Q 038343 22 SNKSCFEVGSGVGLVGICLAHV-KASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESG 100 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~-g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~ 100 (191)
+|.+|||+|||||-.++.+++. |..+|+++|+|+.||+.+++....-+.. .+++...|-++.+
T Consensus 51 ~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~-------------~i~fv~~dAe~LP--- 114 (238)
T COG2226 51 PGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQ-------------NVEFVVGDAENLP--- 114 (238)
T ss_pred CCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCcc-------------ceEEEEechhhCC---
Confidence 7889999999999999977775 4459999999999999999887664432 2666777655443
Q ss_pred CCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCccccccCCC
Q 038343 101 LSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVSSSRKESSK 147 (191)
Q Consensus 101 ~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~~~~~~~~~ 147 (191)
+++++||+|.++-.+.+..+.+..|+.+.|+|||||...++-++.+.
T Consensus 115 f~D~sFD~vt~~fglrnv~d~~~aL~E~~RVlKpgG~~~vle~~~p~ 161 (238)
T COG2226 115 FPDNSFDAVTISFGLRNVTDIDKALKEMYRVLKPGGRLLVLEFSKPD 161 (238)
T ss_pred CCCCccCEEEeeehhhcCCCHHHHHHHHHHhhcCCeEEEEEEcCCCC
Confidence 67889999999999999999999999999999999987777666653
|
|
| >PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.2e-14 Score=96.45 Aligned_cols=92 Identities=17% Similarity=0.151 Sum_probs=73.7
Q ss_pred EEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCCCCCCCC
Q 038343 27 FEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESGLSAFVP 106 (191)
Q Consensus 27 LElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~~~~~~f 106 (191)
||+|||+|..+..+++.+..+|+++|.++++++.++++....+ +.+...+..+. .+++++|
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~~~----------------~~~~~~d~~~l---~~~~~sf 61 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKNEG----------------VSFRQGDAEDL---PFPDNSF 61 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTTST----------------EEEEESBTTSS---SS-TT-E
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhcccccC----------------chheeehHHhC---ccccccc
Confidence 8999999999998888855599999999999999988664432 34566665544 3567899
Q ss_pred CEEEEcccccCCCChHHHHHHHHHHhccCCC
Q 038343 107 EIILGADILYDRSCFPDLVRILAILLNRRKS 137 (191)
Q Consensus 107 DvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~ 137 (191)
|+|++..++++.++...+++.+.++|||+|.
T Consensus 62 D~v~~~~~~~~~~~~~~~l~e~~rvLk~gG~ 92 (95)
T PF08241_consen 62 DVVFSNSVLHHLEDPEAALREIYRVLKPGGR 92 (95)
T ss_dssp EEEEEESHGGGSSHHHHHHHHHHHHEEEEEE
T ss_pred cccccccceeeccCHHHHHHHHHHHcCcCeE
Confidence 9999999999999999999999999999973
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B .... |
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=99.56 E-value=5.5e-14 Score=106.18 Aligned_cols=100 Identities=12% Similarity=0.110 Sum_probs=78.5
Q ss_pred CCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCC
Q 038343 21 FSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESG 100 (191)
Q Consensus 21 ~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~ 100 (191)
.++.+|||+|||+|..++.+++.|. +|+++|+++.+++.+++++..+++. +.....+.....
T Consensus 29 ~~~~~vLDiGcG~G~~a~~la~~g~-~V~~iD~s~~~l~~a~~~~~~~~~~--------------v~~~~~d~~~~~--- 90 (195)
T TIGR00477 29 VAPCKTLDLGCGQGRNSLYLSLAGY-DVRAWDHNPASIASVLDMKARENLP--------------LRTDAYDINAAA--- 90 (195)
T ss_pred CCCCcEEEeCCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHHhCCC--------------ceeEeccchhcc---
Confidence 3567999999999999999999876 8999999999999999888776643 333444433211
Q ss_pred CCCCCCCEEEEcccccCC--CChHHHHHHHHHHhccCCCCc
Q 038343 101 LSAFVPEIILGADILYDR--SCFPDLVRILAILLNRRKSVS 139 (191)
Q Consensus 101 ~~~~~fDvIi~~d~ly~~--~~~~~ll~~l~~ll~~~g~~~ 139 (191)
+ ..+||+|+++.++++. .+...+++.+.++|+|||...
T Consensus 91 ~-~~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~ll 130 (195)
T TIGR00477 91 L-NEDYDFIFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNL 130 (195)
T ss_pred c-cCCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCcEEE
Confidence 1 2479999999988765 467889999999999998744
|
Part of a tellurite-reducing operon tehA and tehB |
| >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.8e-14 Score=113.55 Aligned_cols=107 Identities=26% Similarity=0.374 Sum_probs=76.7
Q ss_pred cHHHHHHHHhhCCCCCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCe
Q 038343 6 SSLLLSEFILSFPEIFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNV 85 (191)
Q Consensus 6 ~a~~L~~~l~~~~~~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~ 85 (191)
.+..-.++|.+. ..++++|||+|||||++++.++++|+++|+++|+++.+++.+++|++.|+.. .+
T Consensus 147 TT~lcl~~l~~~--~~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~------------~~ 212 (295)
T PF06325_consen 147 TTRLCLELLEKY--VKPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVE------------DR 212 (295)
T ss_dssp HHHHHHHHHHHH--SSTTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-T------------TC
T ss_pred HHHHHHHHHHHh--ccCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCC------------ee
Confidence 344445555554 3467899999999999999999999999999999999999999999999976 33
Q ss_pred eEEEeecCCCCCcCCCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCC
Q 038343 86 VQCVHLPWESASESGLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRK 136 (191)
Q Consensus 86 i~~~~ldw~~~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g 136 (191)
+.+. . . ......+||+|+++ .+. ..+-.+...+.++|+|+|
T Consensus 213 ~~v~-~--~----~~~~~~~~dlvvAN-I~~--~vL~~l~~~~~~~l~~~G 253 (295)
T PF06325_consen 213 IEVS-L--S----EDLVEGKFDLVVAN-ILA--DVLLELAPDIASLLKPGG 253 (295)
T ss_dssp EEES-C--T----SCTCCS-EEEEEEE-S-H--HHHHHHHHHCHHHEEEEE
T ss_pred EEEE-E--e----cccccccCCEEEEC-CCH--HHHHHHHHHHHHhhCCCC
Confidence 4332 1 1 11223689999985 211 124567777888899986
|
Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... |
| >PRK15068 tRNA mo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.1e-13 Score=112.09 Aligned_cols=104 Identities=17% Similarity=0.147 Sum_probs=81.4
Q ss_pred CCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcC
Q 038343 20 IFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASES 99 (191)
Q Consensus 20 ~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~ 99 (191)
..++++|||+|||+|..+..++..|+..|+++|.++.++...+......+.. .++.+...+..+..
T Consensus 120 ~l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~------------~~i~~~~~d~e~lp-- 185 (322)
T PRK15068 120 PLKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGND------------QRAHLLPLGIEQLP-- 185 (322)
T ss_pred CCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCC------------CCeEEEeCCHHHCC--
Confidence 3578899999999999999888888878999999988876544332221111 34677777765443
Q ss_pred CCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCc
Q 038343 100 GLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVS 139 (191)
Q Consensus 100 ~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~ 139 (191)
. .++||+|++..++||..+...+++.+++.|+|||...
T Consensus 186 -~-~~~FD~V~s~~vl~H~~dp~~~L~~l~~~LkpGG~lv 223 (322)
T PRK15068 186 -A-LKAFDTVFSMGVLYHRRSPLDHLKQLKDQLVPGGELV 223 (322)
T ss_pred -C-cCCcCEEEECChhhccCCHHHHHHHHHHhcCCCcEEE
Confidence 1 4679999999999999999999999999999998654
|
|
| >TIGR00452 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.4e-13 Score=110.63 Aligned_cols=105 Identities=16% Similarity=0.161 Sum_probs=80.2
Q ss_pred CCCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCc
Q 038343 19 EIFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASE 98 (191)
Q Consensus 19 ~~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~ 98 (191)
...++++|||+|||+|.....++..|+..|+++|.++.++..++......... .++.+..++.++...
T Consensus 118 ~~~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~------------~~v~~~~~~ie~lp~ 185 (314)
T TIGR00452 118 SPLKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDND------------KRAILEPLGIEQLHE 185 (314)
T ss_pred CCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccC------------CCeEEEECCHHHCCC
Confidence 44678899999999999988888888878999999999887654322211111 235556665544321
Q ss_pred CCCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCc
Q 038343 99 SGLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVS 139 (191)
Q Consensus 99 ~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~ 139 (191)
..+||+|++..++||..+...+++.+++.|+|||...
T Consensus 186 ----~~~FD~V~s~gvL~H~~dp~~~L~el~r~LkpGG~Lv 222 (314)
T TIGR00452 186 ----LYAFDTVFSMGVLYHRKSPLEHLKQLKHQLVIKGELV 222 (314)
T ss_pred ----CCCcCEEEEcchhhccCCHHHHHHHHHHhcCCCCEEE
Confidence 2479999999999999999999999999999998654
|
Known examples to date are restricted to the proteobacteria. |
| >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] | Back alignment and domain information |
|---|
Probab=99.51 E-value=7.5e-14 Score=108.08 Aligned_cols=115 Identities=17% Similarity=0.038 Sum_probs=83.4
Q ss_pred CCCCcEEEeCCCccHHHHHHHhc-CC-CeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCc
Q 038343 21 FSNKSCFEVGSGVGLVGICLAHV-KA-SKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASE 98 (191)
Q Consensus 21 ~~~~~VLElG~GtG~~~~~la~~-g~-~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~ 98 (191)
.++.+|||+|||||..+..+++. +. .+|+++|+++.||+.+++++...+.. ++.+...|-++.+
T Consensus 46 ~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~-------------~i~~v~~da~~lp- 111 (233)
T PF01209_consen 46 RPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQ-------------NIEFVQGDAEDLP- 111 (233)
T ss_dssp -S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT---------------SEEEEE-BTTB---
T ss_pred CCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCC-------------CeeEEEcCHHHhc-
Confidence 36779999999999999987764 33 38999999999999999998876532 5777777765443
Q ss_pred CCCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCccccccCCCCccc
Q 038343 99 SGLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVSSSRKESSKGFTL 151 (191)
Q Consensus 99 ~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~~~~~~~~~~~~~ 151 (191)
+++++||+|+++-.+.+.++.+..++.+.++|||||...++-++.++.+.+
T Consensus 112 --~~d~sfD~v~~~fglrn~~d~~~~l~E~~RVLkPGG~l~ile~~~p~~~~~ 162 (233)
T PF01209_consen 112 --FPDNSFDAVTCSFGLRNFPDRERALREMYRVLKPGGRLVILEFSKPRNPLL 162 (233)
T ss_dssp --S-TT-EEEEEEES-GGG-SSHHHHHHHHHHHEEEEEEEEEEEEEB-SSHHH
T ss_pred --CCCCceeEEEHHhhHHhhCCHHHHHHHHHHHcCCCeEEEEeeccCCCCchh
Confidence 466899999999999999999999999999999999888777766654433
|
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. |
| >PLN02233 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.50 E-value=6.1e-13 Score=104.83 Aligned_cols=111 Identities=15% Similarity=0.002 Sum_probs=84.8
Q ss_pred CCCCcEEEeCCCccHHHHHHHhc-CC-CeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCc
Q 038343 21 FSNKSCFEVGSGVGLVGICLAHV-KA-SKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASE 98 (191)
Q Consensus 21 ~~~~~VLElG~GtG~~~~~la~~-g~-~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~ 98 (191)
.++.+|||+|||+|..+..+++. +. .+|+++|++++|++.++++....... ...++.+...|..+.+
T Consensus 72 ~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~----------~~~~i~~~~~d~~~lp- 140 (261)
T PLN02233 72 KMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKS----------CYKNIEWIEGDATDLP- 140 (261)
T ss_pred CCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhc----------cCCCeEEEEcccccCC-
Confidence 46779999999999988877764 43 48999999999999998765321100 0124666777655432
Q ss_pred CCCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCcccccc
Q 038343 99 SGLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVSSSRKE 144 (191)
Q Consensus 99 ~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~~~~~~ 144 (191)
+++++||+|+++.++++..+...+++.+.++|||||....+...
T Consensus 141 --~~~~sfD~V~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~~ 184 (261)
T PLN02233 141 --FDDCYFDAITMGYGLRNVVDRLKAMQEMYRVLKPGSRVSILDFN 184 (261)
T ss_pred --CCCCCEeEEEEecccccCCCHHHHHHHHHHHcCcCcEEEEEECC
Confidence 45578999999999999999999999999999999976654433
|
|
| >PRK12335 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=4e-13 Score=107.26 Aligned_cols=99 Identities=20% Similarity=0.207 Sum_probs=80.1
Q ss_pred CCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCCC
Q 038343 22 SNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESGL 101 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~~ 101 (191)
++.+|||+|||+|..++.+++.|. +|+++|.++.+++.+++++..+++. +.+...|..... +
T Consensus 120 ~~~~vLDlGcG~G~~~~~la~~g~-~V~avD~s~~ai~~~~~~~~~~~l~--------------v~~~~~D~~~~~---~ 181 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYLALLGF-DVTAVDINQQSLENLQEIAEKENLN--------------IRTGLYDINSAS---I 181 (287)
T ss_pred CCCCEEEeCCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcCCc--------------eEEEEechhccc---c
Confidence 456999999999999999999886 8999999999999999998877642 445555544321 1
Q ss_pred CCCCCCEEEEcccccCC--CChHHHHHHHHHHhccCCCCc
Q 038343 102 SAFVPEIILGADILYDR--SCFPDLVRILAILLNRRKSVS 139 (191)
Q Consensus 102 ~~~~fDvIi~~d~ly~~--~~~~~ll~~l~~ll~~~g~~~ 139 (191)
+++||+|++..++++. +....+++.+.++|+|||...
T Consensus 182 -~~~fD~I~~~~vl~~l~~~~~~~~l~~~~~~LkpgG~~l 220 (287)
T PRK12335 182 -QEEYDFILSTVVLMFLNRERIPAIIKNMQEHTNPGGYNL 220 (287)
T ss_pred -cCCccEEEEcchhhhCCHHHHHHHHHHHHHhcCCCcEEE
Confidence 4589999999988864 467889999999999998643
|
|
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=99.48 E-value=4.4e-13 Score=106.04 Aligned_cols=109 Identities=14% Similarity=0.142 Sum_probs=83.7
Q ss_pred HHHHHhhCCCCCCCCcEEEeCCCccHHHHHHHhc-CCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEE
Q 038343 10 LSEFILSFPEIFSNKSCFEVGSGVGLVGICLAHV-KASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQC 88 (191)
Q Consensus 10 L~~~l~~~~~~~~~~~VLElG~GtG~~~~~la~~-g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~ 88 (191)
..+.+.......+|.+|||||||-|.+++.+++. |+ +|+++.+|++..+.+++.++..++. ..+.+
T Consensus 50 k~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~g~-~v~gitlS~~Q~~~a~~~~~~~gl~------------~~v~v 116 (273)
T PF02353_consen 50 KLDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERYGC-HVTGITLSEEQAEYARERIREAGLE------------DRVEV 116 (273)
T ss_dssp HHHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCSTSS------------STEEE
T ss_pred HHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCc-EEEEEECCHHHHHHHHHHHHhcCCC------------CceEE
Confidence 3445566667779999999999999999988887 77 8999999999999999999888765 46778
Q ss_pred EeecCCCCCcCCCCCCCCCEEEEcccccCC--CChHHHHHHHHHHhccCCC
Q 038343 89 VHLPWESASESGLSAFVPEIILGADILYDR--SCFPDLVRILAILLNRRKS 137 (191)
Q Consensus 89 ~~ldw~~~~~~~~~~~~fDvIi~~d~ly~~--~~~~~ll~~l~~ll~~~g~ 137 (191)
...||.+.. .+||-|++-+++.+. ...+.+++.+.++|+|||.
T Consensus 117 ~~~D~~~~~------~~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~ 161 (273)
T PF02353_consen 117 RLQDYRDLP------GKFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGR 161 (273)
T ss_dssp EES-GGG---------S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEE
T ss_pred EEeeccccC------CCCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcE
Confidence 888876543 389999999999987 5789999999999999975
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=99.48 E-value=8.8e-13 Score=98.43 Aligned_cols=98 Identities=23% Similarity=0.239 Sum_probs=77.7
Q ss_pred CCCCcEEEeCCCccHHHHHHHhcCC-CeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcC
Q 038343 21 FSNKSCFEVGSGVGLVGICLAHVKA-SKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASES 99 (191)
Q Consensus 21 ~~~~~VLElG~GtG~~~~~la~~g~-~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~ 99 (191)
.++.+|||+|||+|..++.++..+. .+|+++|.++.+++.++++++.++.. ++.+...++.+..
T Consensus 41 ~~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~-------------~i~~i~~d~~~~~-- 105 (181)
T TIGR00138 41 LDGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLN-------------NVEIVNGRAEDFQ-- 105 (181)
T ss_pred cCCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCC-------------CeEEEecchhhcc--
Confidence 3578999999999999998776543 48999999999999999999887643 4777887776531
Q ss_pred CCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCc
Q 038343 100 GLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVS 139 (191)
Q Consensus 100 ~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~ 139 (191)
..++||+|++.. ...++.+++.+.++|+|+|...
T Consensus 106 --~~~~fD~I~s~~----~~~~~~~~~~~~~~LkpgG~lv 139 (181)
T TIGR00138 106 --HEEQFDVITSRA----LASLNVLLELTLNLLKVGGYFL 139 (181)
T ss_pred --ccCCccEEEehh----hhCHHHHHHHHHHhcCCCCEEE
Confidence 235899998854 2457788999999999998644
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.48 E-value=7.1e-13 Score=104.08 Aligned_cols=109 Identities=15% Similarity=0.143 Sum_probs=94.0
Q ss_pred HHHhhCCCCCCCCcEEEeCCCccHHHHHHHhc-CCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEe
Q 038343 12 EFILSFPEIFSNKSCFEVGSGVGLVGICLAHV-KASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVH 90 (191)
Q Consensus 12 ~~l~~~~~~~~~~~VLElG~GtG~~~~~la~~-g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ 90 (191)
+.+....+.-+|++|||||||-|.+++.+|+. |+ +|+++++|++..+.+++.+...++. .++++.-
T Consensus 62 ~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y~v-~V~GvTlS~~Q~~~~~~r~~~~gl~------------~~v~v~l 128 (283)
T COG2230 62 DLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEYGV-TVVGVTLSEEQLAYAEKRIAARGLE------------DNVEVRL 128 (283)
T ss_pred HHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHcCC-EEEEeeCCHHHHHHHHHHHHHcCCC------------cccEEEe
Confidence 34455566779999999999999999988886 55 9999999999999999999988876 5788999
Q ss_pred ecCCCCCcCCCCCCCCCEEEEcccccCCCC--hHHHHHHHHHHhccCCCCc
Q 038343 91 LPWESASESGLSAFVPEIILGADILYDRSC--FPDLVRILAILLNRRKSVS 139 (191)
Q Consensus 91 ldw~~~~~~~~~~~~fDvIi~~d~ly~~~~--~~~ll~~l~~ll~~~g~~~ 139 (191)
.||.+.. ++||-|++.+++.+... .+.+++.+.++|+|+|...
T Consensus 129 ~d~rd~~------e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~l 173 (283)
T COG2230 129 QDYRDFE------EPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRML 173 (283)
T ss_pred ccccccc------cccceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEE
Confidence 9998765 35999999999998765 9999999999999998644
|
|
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=4.8e-13 Score=105.54 Aligned_cols=109 Identities=16% Similarity=0.041 Sum_probs=82.1
Q ss_pred HhhCCCCCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecC
Q 038343 14 ILSFPEIFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPW 93 (191)
Q Consensus 14 l~~~~~~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw 93 (191)
+.......++.+|||+|||+|..+..+++....+|+++|+++.+++.++++.... .++.+...|.
T Consensus 44 ~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~~---------------~~i~~~~~D~ 108 (263)
T PTZ00098 44 ILSDIELNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSDK---------------NKIEFEANDI 108 (263)
T ss_pred HHHhCCCCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCcC---------------CceEEEECCc
Confidence 3333444577899999999999888776542238999999999999998765431 2466666665
Q ss_pred CCCCcCCCCCCCCCEEEEcccccCCC--ChHHHHHHHHHHhccCCCCcc
Q 038343 94 ESASESGLSAFVPEIILGADILYDRS--CFPDLVRILAILLNRRKSVSS 140 (191)
Q Consensus 94 ~~~~~~~~~~~~fDvIi~~d~ly~~~--~~~~ll~~l~~ll~~~g~~~~ 140 (191)
... .+++++||+|++.+++++.. +...+++.+.++|+|||....
T Consensus 109 ~~~---~~~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi 154 (263)
T PTZ00098 109 LKK---DFPENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLI 154 (263)
T ss_pred ccC---CCCCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEE
Confidence 432 23456899999999887754 788999999999999987553
|
|
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.7e-12 Score=99.19 Aligned_cols=103 Identities=17% Similarity=0.055 Sum_probs=82.1
Q ss_pred CCCCcEEEeCCCccHHHHHHHhc-CC-CeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCc
Q 038343 21 FSNKSCFEVGSGVGLVGICLAHV-KA-SKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASE 98 (191)
Q Consensus 21 ~~~~~VLElG~GtG~~~~~la~~-g~-~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~ 98 (191)
.++.+|||+|||+|..+..+++. +. .+|+++|+++.+++.+++++..++.. ++.+...|..+..
T Consensus 44 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~-------------~v~~~~~d~~~~~- 109 (231)
T TIGR02752 44 QAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLH-------------NVELVHGNAMELP- 109 (231)
T ss_pred CCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCC-------------ceEEEEechhcCC-
Confidence 46789999999999998877764 32 48999999999999999998765532 4566666654322
Q ss_pred CCCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCc
Q 038343 99 SGLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVS 139 (191)
Q Consensus 99 ~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~ 139 (191)
+.+++||+|+++.++.+.++...+++.+.++|+|||...
T Consensus 110 --~~~~~fD~V~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~ 148 (231)
T TIGR02752 110 --FDDNSFDYVTIGFGLRNVPDYMQVLREMYRVVKPGGKVV 148 (231)
T ss_pred --CCCCCccEEEEecccccCCCHHHHHHHHHHHcCcCeEEE
Confidence 344689999999999888899999999999999998543
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. |
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=3.9e-12 Score=98.04 Aligned_cols=114 Identities=17% Similarity=0.174 Sum_probs=84.5
Q ss_pred HHHHHHHHhhCCCCCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCee
Q 038343 7 SLLLSEFILSFPEIFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVV 86 (191)
Q Consensus 7 a~~L~~~l~~~~~~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i 86 (191)
+..|++++.... ..++.+|||+|||+|..++.+++.+..+|+++|+++.+++.+++|+..++. ++
T Consensus 22 s~~l~~~l~~~~-~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~--------------~~ 86 (223)
T PRK14967 22 TQLLADALAAEG-LGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGV--------------DV 86 (223)
T ss_pred HHHHHHHHHhcc-cCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCC--------------ee
Confidence 566777765432 345679999999999999988888766999999999999999999988763 25
Q ss_pred EEEeecCCCCCcCCCCCCCCCEEEEcccccCCCC---------------------hHHHHHHHHHHhccCCCCc
Q 038343 87 QCVHLPWESASESGLSAFVPEIILGADILYDRSC---------------------FPDLVRILAILLNRRKSVS 139 (191)
Q Consensus 87 ~~~~ldw~~~~~~~~~~~~fDvIi~~d~ly~~~~---------------------~~~ll~~l~~ll~~~g~~~ 139 (191)
.+...|+.+. +...+||+|+++..++.... .+.+++.+.++|+++|...
T Consensus 87 ~~~~~d~~~~----~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~ 156 (223)
T PRK14967 87 DVRRGDWARA----VEFRPFDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLL 156 (223)
T ss_pred EEEECchhhh----ccCCCeeEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEE
Confidence 5666666442 23458999999754332211 4567788899999998643
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.47 E-value=8.4e-13 Score=112.31 Aligned_cols=102 Identities=15% Similarity=0.063 Sum_probs=82.5
Q ss_pred CCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCC
Q 038343 21 FSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESG 100 (191)
Q Consensus 21 ~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~ 100 (191)
.++.+|||+|||+|..++.+++....+|+++|+++.+++.+++|..... .++.+...|+....
T Consensus 265 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~~~~--------------~~v~~~~~d~~~~~--- 327 (475)
T PLN02336 265 KPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAIGRK--------------CSVEFEVADCTKKT--- 327 (475)
T ss_pred CCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhhcCC--------------CceEEEEcCcccCC---
Confidence 4677999999999998887776423389999999999999988764222 34677777776532
Q ss_pred CCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCc
Q 038343 101 LSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVS 139 (191)
Q Consensus 101 ~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~ 139 (191)
+++++||+|++.+++++..+.+.+++.+.++|+|||...
T Consensus 328 ~~~~~fD~I~s~~~l~h~~d~~~~l~~~~r~LkpgG~l~ 366 (475)
T PLN02336 328 YPDNSFDVIYSRDTILHIQDKPALFRSFFKWLKPGGKVL 366 (475)
T ss_pred CCCCCEEEEEECCcccccCCHHHHHHHHHHHcCCCeEEE
Confidence 344689999999999999999999999999999998644
|
|
| >PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.47 E-value=7.3e-15 Score=98.95 Aligned_cols=96 Identities=15% Similarity=0.086 Sum_probs=58.4
Q ss_pred EEeCCCccHHHHHHHhc-CCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCCCCCCC
Q 038343 27 FEVGSGVGLVGICLAHV-KASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESGLSAFV 105 (191)
Q Consensus 27 LElG~GtG~~~~~la~~-g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~~~~~~ 105 (191)
||+|||+|.....+... ...+|+++|+|+.+++.+++.+........ ..+.+...+..+. ....+
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~----------~~~~~~~~~~~~~----~~~~~ 66 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNF----------ERLRFDVLDLFDY----DPPES 66 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---E----------EEEE--SSS---C----CC---
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcce----------eEEEeecCChhhc----ccccc
Confidence 79999999888755544 334999999999999888777766553210 1122222222111 11258
Q ss_pred CCEEEEcccccCCCChHHHHHHHHHHhccCC
Q 038343 106 PEIILGADILYDRSCFPDLVRILAILLNRRK 136 (191)
Q Consensus 106 fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g 136 (191)
||+|+++.++++.++...+++.+.++|+|||
T Consensus 67 fD~V~~~~vl~~l~~~~~~l~~~~~~L~pgG 97 (99)
T PF08242_consen 67 FDLVVASNVLHHLEDIEAVLRNIYRLLKPGG 97 (99)
T ss_dssp -SEEEEE-TTS--S-HHHHHHHHTTT-TSS-
T ss_pred cceehhhhhHhhhhhHHHHHHHHHHHcCCCC
Confidence 9999999999999999999999999999997
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A. |
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.3e-12 Score=97.94 Aligned_cols=99 Identities=26% Similarity=0.248 Sum_probs=79.2
Q ss_pred CCCcEEEeCCCccHHHHHHHhc-CCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCC
Q 038343 22 SNKSCFEVGSGVGLVGICLAHV-KASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESG 100 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~-g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~ 100 (191)
++.+|||+|||+|..++.+++. ...+|+++|.++.+++.++++++.++.. ++++...+..+...
T Consensus 45 ~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~-------------~i~~~~~d~~~~~~-- 109 (187)
T PRK00107 45 GGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLK-------------NVTVVHGRAEEFGQ-- 109 (187)
T ss_pred CCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCC-------------CEEEEeccHhhCCC--
Confidence 3789999999999999987753 3359999999999999999999998754 36777777654321
Q ss_pred CCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCccc
Q 038343 101 LSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVSSS 141 (191)
Q Consensus 101 ~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~~~ 141 (191)
..+||+|++.. ...++.+++.+.++|+|+|....+
T Consensus 110 --~~~fDlV~~~~----~~~~~~~l~~~~~~LkpGG~lv~~ 144 (187)
T PRK00107 110 --EEKFDVVTSRA----VASLSDLVELCLPLLKPGGRFLAL 144 (187)
T ss_pred --CCCccEEEEcc----ccCHHHHHHHHHHhcCCCeEEEEE
Confidence 45899999864 246789999999999999875544
|
|
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.2e-12 Score=103.04 Aligned_cols=111 Identities=24% Similarity=0.327 Sum_probs=80.0
Q ss_pred ccHHHHHHHHhhCCCCCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCC
Q 038343 5 PSSLLLSEFILSFPEIFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPN 84 (191)
Q Consensus 5 ~~a~~L~~~l~~~~~~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~ 84 (191)
+.+....+++.... .++.+|||+|||+|.+++.+++.|+.+|+++|+++.+++.+++|+..|+.. .
T Consensus 144 ~tt~l~l~~l~~~~--~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~------------~ 209 (288)
T TIGR00406 144 PTTSLCLEWLEDLD--LKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVS------------D 209 (288)
T ss_pred HHHHHHHHHHHhhc--CCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCC------------c
Confidence 33444444444332 367899999999999999999998889999999999999999999998764 2
Q ss_pred eeEEEeecCCCCCcCCCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCC
Q 038343 85 VVQCVHLPWESASESGLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKS 137 (191)
Q Consensus 85 ~i~~~~ldw~~~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~ 137 (191)
.+.+...+.. ....++||+|+++-+ ......++..+.++|+|+|.
T Consensus 210 ~~~~~~~~~~-----~~~~~~fDlVvan~~---~~~l~~ll~~~~~~LkpgG~ 254 (288)
T TIGR00406 210 RLQVKLIYLE-----QPIEGKADVIVANIL---AEVIKELYPQFSRLVKPGGW 254 (288)
T ss_pred ceEEEecccc-----cccCCCceEEEEecC---HHHHHHHHHHHHHHcCCCcE
Confidence 2333332211 112358999998532 23456788999999999973
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB | Back alignment and domain information |
|---|
Probab=99.45 E-value=4.4e-13 Score=100.23 Aligned_cols=102 Identities=14% Similarity=0.165 Sum_probs=78.5
Q ss_pred CCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcC
Q 038343 20 IFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASES 99 (191)
Q Consensus 20 ~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~ 99 (191)
..+..++||||||.|-.++++|+.|. .|+++|+++.+++.+++.++..++. ++....|..+..
T Consensus 28 ~~~~g~~LDlgcG~GRNalyLA~~G~-~VtAvD~s~~al~~l~~~a~~~~l~--------------i~~~~~Dl~~~~-- 90 (192)
T PF03848_consen 28 LLKPGKALDLGCGEGRNALYLASQGF-DVTAVDISPVALEKLQRLAEEEGLD--------------IRTRVADLNDFD-- 90 (192)
T ss_dssp TS-SSEEEEES-TTSHHHHHHHHTT--EEEEEESSHHHHHHHHHHHHHTT-T--------------EEEEE-BGCCBS--
T ss_pred hcCCCcEEEcCCCCcHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHhhcCce--------------eEEEEecchhcc--
Confidence 44677999999999999999999998 8999999999999998888777754 666777765442
Q ss_pred CCCCCCCCEEEEccccc--CCCChHHHHHHHHHHhccCCCCcc
Q 038343 100 GLSAFVPEIILGADILY--DRSCFPDLVRILAILLNRRKSVSS 140 (191)
Q Consensus 100 ~~~~~~fDvIi~~d~ly--~~~~~~~ll~~l~~ll~~~g~~~~ 140 (191)
+ +..||+|++.-+++ ..+..+.+++.++..++|||....
T Consensus 91 -~-~~~yD~I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li 131 (192)
T PF03848_consen 91 -F-PEEYDFIVSTVVFMFLQRELRPQIIENMKAATKPGGYNLI 131 (192)
T ss_dssp ---TTTEEEEEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEE
T ss_pred -c-cCCcCEEEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEE
Confidence 2 25799999876665 456778899999999999986443
|
When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A. |
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=3.5e-12 Score=95.27 Aligned_cols=116 Identities=20% Similarity=0.193 Sum_probs=84.8
Q ss_pred cccHHHHHHHHhhCCCCCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCC
Q 038343 4 WPSSLLLSEFILSFPEIFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDP 83 (191)
Q Consensus 4 W~~a~~L~~~l~~~~~~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~ 83 (191)
|+.+..|.+++.. .++++|||+|||+|..+..++..+. +|+++|.++.+++.+++|+..++...
T Consensus 9 ~~~~~~l~~~~~~----~~~~~vLd~G~G~G~~~~~l~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~~~----------- 72 (188)
T PRK14968 9 AEDSFLLAENAVD----KKGDRVLEVGTGSGIVAIVAAKNGK-KVVGVDINPYAVECAKCNAKLNNIRN----------- 72 (188)
T ss_pred chhHHHHHHhhhc----cCCCEEEEEccccCHHHHHHHhhcc-eEEEEECCHHHHHHHHHHHHHcCCCC-----------
Confidence 4455666666543 3677999999999999998888864 99999999999999999998876531
Q ss_pred CeeEEEeecCCCCCcCCCCCCCCCEEEEcccccCCC---------------------ChHHHHHHHHHHhccCCCCc
Q 038343 84 NVVQCVHLPWESASESGLSAFVPEIILGADILYDRS---------------------CFPDLVRILAILLNRRKSVS 139 (191)
Q Consensus 84 ~~i~~~~ldw~~~~~~~~~~~~fDvIi~~d~ly~~~---------------------~~~~ll~~l~~ll~~~g~~~ 139 (191)
..+.+...|+.+.. ...+||+|+++..++... ....+++.+.++|+|+|...
T Consensus 73 ~~~~~~~~d~~~~~----~~~~~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~ 145 (188)
T PRK14968 73 NGVEVIRSDLFEPF----RGDKFDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRIL 145 (188)
T ss_pred cceEEEeccccccc----cccCceEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEE
Confidence 11556666654432 234799999876654311 14567899999999998544
|
|
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.1e-12 Score=107.84 Aligned_cols=105 Identities=16% Similarity=0.178 Sum_probs=78.4
Q ss_pred CCcEEEeCCCccHHHHHHHhcCC-CeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCCC
Q 038343 23 NKSCFEVGSGVGLVGICLAHVKA-SKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESGL 101 (191)
Q Consensus 23 ~~~VLElG~GtG~~~~~la~~g~-~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~~ 101 (191)
+.+|||||||+|.+++.+++.++ .+|+++|.++.+++.+++|++.|+.... .++.+...|.... .
T Consensus 229 ~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~----------~~v~~~~~D~l~~----~ 294 (378)
T PRK15001 229 EGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEAL----------DRCEFMINNALSG----V 294 (378)
T ss_pred CCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccC----------ceEEEEEcccccc----C
Confidence 45899999999999998888653 4999999999999999999998874310 2355554443221 2
Q ss_pred CCCCCCEEEEcccccCCC-----ChHHHHHHHHHHhccCCCCccc
Q 038343 102 SAFVPEIILGADILYDRS-----CFPDLVRILAILLNRRKSVSSS 141 (191)
Q Consensus 102 ~~~~fDvIi~~d~ly~~~-----~~~~ll~~l~~ll~~~g~~~~~ 141 (191)
...+||+|+++.+++... ....+++...+.|+|+|....+
T Consensus 295 ~~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV 339 (378)
T PRK15001 295 EPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIV 339 (378)
T ss_pred CCCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEE
Confidence 335799999987776432 3467788899999999976654
|
|
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.4e-12 Score=102.12 Aligned_cols=99 Identities=15% Similarity=0.057 Sum_probs=78.0
Q ss_pred CCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCCC
Q 038343 22 SNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESGL 101 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~~ 101 (191)
++.+|||+|||+|..+..++..+. +|+++|+++.+++.++++... ..+...|+... .+
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~~~D~s~~~l~~a~~~~~~------------------~~~~~~d~~~~---~~ 99 (251)
T PRK10258 42 KFTHVLDAGCGPGWMSRYWRERGS-QVTALDLSPPMLAQARQKDAA------------------DHYLAGDIESL---PL 99 (251)
T ss_pred CCCeEEEeeCCCCHHHHHHHHcCC-eEEEEECCHHHHHHHHhhCCC------------------CCEEEcCcccC---cC
Confidence 467899999999998888888775 899999999999988765321 12344444432 13
Q ss_pred CCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCcccc
Q 038343 102 SAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVSSSR 142 (191)
Q Consensus 102 ~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~~~~ 142 (191)
.+++||+|+++.++++..+...+++.+.++|+|+|......
T Consensus 100 ~~~~fD~V~s~~~l~~~~d~~~~l~~~~~~Lk~gG~l~~~~ 140 (251)
T PRK10258 100 ATATFDLAWSNLAVQWCGNLSTALRELYRVVRPGGVVAFTT 140 (251)
T ss_pred CCCcEEEEEECchhhhcCCHHHHHHHHHHHcCCCeEEEEEe
Confidence 45689999999999999999999999999999998765443
|
|
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.43 E-value=4e-12 Score=99.60 Aligned_cols=105 Identities=26% Similarity=0.324 Sum_probs=77.3
Q ss_pred ccHHHHHHHHhhCCCCCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCC
Q 038343 5 PSSLLLSEFILSFPEIFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPN 84 (191)
Q Consensus 5 ~~a~~L~~~l~~~~~~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~ 84 (191)
+.+..+.+++... ..++.+|||+|||+|.+++.+++.|+.+|+++|+++.+++.+++|+..|+.. .
T Consensus 104 ~tt~~~l~~l~~~--~~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~~~------------~ 169 (250)
T PRK00517 104 PTTRLCLEALEKL--VLPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGVE------------L 169 (250)
T ss_pred HHHHHHHHHHHhh--cCCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCC------------c
Confidence 3444555555443 2367899999999999999989988878999999999999999999988753 1
Q ss_pred eeEEEeecCCCCCcCCCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCC
Q 038343 85 VVQCVHLPWESASESGLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKS 137 (191)
Q Consensus 85 ~i~~~~ldw~~~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~ 137 (191)
.+.+... +.+||+|+++-. ......+++.+.++|+|+|.
T Consensus 170 ~~~~~~~-----------~~~fD~Vvani~---~~~~~~l~~~~~~~LkpgG~ 208 (250)
T PRK00517 170 NVYLPQG-----------DLKADVIVANIL---ANPLLELAPDLARLLKPGGR 208 (250)
T ss_pred eEEEccC-----------CCCcCEEEEcCc---HHHHHHHHHHHHHhcCCCcE
Confidence 2222111 126999998522 23356788899999999974
|
|
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=3.1e-12 Score=100.50 Aligned_cols=98 Identities=21% Similarity=0.150 Sum_probs=76.0
Q ss_pred CCCCcEEEeCCCccHHHHHHHhc-CCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcC
Q 038343 21 FSNKSCFEVGSGVGLVGICLAHV-KASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASES 99 (191)
Q Consensus 21 ~~~~~VLElG~GtG~~~~~la~~-g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~ 99 (191)
.++.+|||+|||+|..+..+++. +..+|+++|+++.+++.++++.. ++.+...|.....
T Consensus 30 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~------------------~~~~~~~d~~~~~-- 89 (258)
T PRK01683 30 ENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLP------------------DCQFVEADIASWQ-- 89 (258)
T ss_pred cCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCC------------------CCeEEECchhccC--
Confidence 46779999999999998877765 33589999999999999886531 2334444433221
Q ss_pred CCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCcc
Q 038343 100 GLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVSS 140 (191)
Q Consensus 100 ~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~~ 140 (191)
...+||+|+++.++++..+...+++.+.++|+|||....
T Consensus 90 --~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~~~~ 128 (258)
T PRK01683 90 --PPQALDLIFANASLQWLPDHLELFPRLVSLLAPGGVLAV 128 (258)
T ss_pred --CCCCccEEEEccChhhCCCHHHHHHHHHHhcCCCcEEEE
Confidence 234899999999999999999999999999999986543
|
|
| >COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.42 E-value=4.3e-12 Score=100.05 Aligned_cols=103 Identities=17% Similarity=0.218 Sum_probs=79.3
Q ss_pred CCCcEEEeCCCccHHHHHHHhcCC-CeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCC
Q 038343 22 SNKSCFEVGSGVGLVGICLAHVKA-SKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESG 100 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~g~-~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~ 100 (191)
.+.+|||+|||.|.+|+.+++..+ .+++++|.|..+++.+++|++.|+.+. ..+..-+..+.
T Consensus 158 ~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~-------------~~v~~s~~~~~---- 220 (300)
T COG2813 158 LGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVEN-------------TEVWASNLYEP---- 220 (300)
T ss_pred CCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCc-------------cEEEEeccccc----
Confidence 344999999999999999988753 599999999999999999999998762 12233332222
Q ss_pred CCCCCCCEEEEcccccCCCCh-----HHHHHHHHHHhccCCCCcccc
Q 038343 101 LSAFVPEIILGADILYDRSCF-----PDLVRILAILLNRRKSVSSSR 142 (191)
Q Consensus 101 ~~~~~fDvIi~~d~ly~~~~~-----~~ll~~l~~ll~~~g~~~~~~ 142 (191)
.. ++||+||++..|+..... ..+++.-.+.|++||....+.
T Consensus 221 v~-~kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVa 266 (300)
T COG2813 221 VE-GKFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVA 266 (300)
T ss_pred cc-ccccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEE
Confidence 22 389999999999965443 368899999999998766544
|
|
| >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Probab=99.42 E-value=2e-12 Score=99.50 Aligned_cols=101 Identities=13% Similarity=0.052 Sum_probs=82.5
Q ss_pred CcEEEeCCCccHHHHHHHhcC-CCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCCCC
Q 038343 24 KSCFEVGSGVGLVGICLAHVK-ASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESGLS 102 (191)
Q Consensus 24 ~~VLElG~GtG~~~~~la~~g-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~~~ 102 (191)
++|||+|||+|..+..+++.. ..+|+++|+++.+++.+++++...+.. .++.+...|..... .
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~------------~~i~~~~~d~~~~~---~- 64 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQ------------GRIRIFYRDSAKDP---F- 64 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCC------------cceEEEecccccCC---C-
Confidence 479999999999888777653 348999999999999999998877654 45677777764432 1
Q ss_pred CCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCcc
Q 038343 103 AFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVSS 140 (191)
Q Consensus 103 ~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~~ 140 (191)
.++||+|++..++++..+.+.+++.+.++|+|+|....
T Consensus 65 ~~~fD~I~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i 102 (224)
T smart00828 65 PDTYDLVFGFEVIHHIKDKMDLFSNISRHLKDGGHLVL 102 (224)
T ss_pred CCCCCEeehHHHHHhCCCHHHHHHHHHHHcCCCCEEEE
Confidence 24799999999999999999999999999999987553
|
|
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.42 E-value=3e-12 Score=101.38 Aligned_cols=104 Identities=16% Similarity=0.106 Sum_probs=83.0
Q ss_pred CCCCcEEEeCCCccHHHHHHHh-cCC-CeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCc
Q 038343 21 FSNKSCFEVGSGVGLVGICLAH-VKA-SKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASE 98 (191)
Q Consensus 21 ~~~~~VLElG~GtG~~~~~la~-~g~-~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~ 98 (191)
.++.+|||+|||+|..++.+++ .+. .+|+++|.++.+++.++++...++.. ++.+...++.+..
T Consensus 76 ~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~-------------~v~~~~~d~~~l~- 141 (272)
T PRK11873 76 KPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYT-------------NVEFRLGEIEALP- 141 (272)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCC-------------CEEEEEcchhhCC-
Confidence 4678999999999988876555 344 37999999999999999998776642 4566666655432
Q ss_pred CCCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCcc
Q 038343 99 SGLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVSS 140 (191)
Q Consensus 99 ~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~~ 140 (191)
+.+++||+|++..++++..+...+++.+.++|+|||....
T Consensus 142 --~~~~~fD~Vi~~~v~~~~~d~~~~l~~~~r~LkpGG~l~i 181 (272)
T PRK11873 142 --VADNSVDVIISNCVINLSPDKERVFKEAFRVLKPGGRFAI 181 (272)
T ss_pred --CCCCceeEEEEcCcccCCCCHHHHHHHHHHHcCCCcEEEE
Confidence 3446899999999999888999999999999999987554
|
|
| >KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.41 E-value=6.8e-13 Score=105.89 Aligned_cols=122 Identities=19% Similarity=0.216 Sum_probs=96.5
Q ss_pred HhhCCCCCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecC
Q 038343 14 ILSFPEIFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPW 93 (191)
Q Consensus 14 l~~~~~~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw 93 (191)
+.++.+.++++.|||+|||||.++++.|+.|+++|+++|.+ .+.+.+++.+..|++. +.+++.....
T Consensus 52 i~~n~~lf~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S-~ia~~a~~iv~~N~~~------------~ii~vi~gkv 118 (346)
T KOG1499|consen 52 ILQNKHLFKDKTVLDVGCGTGILSMFAAKAGARKVYAVEAS-SIADFARKIVKDNGLE------------DVITVIKGKV 118 (346)
T ss_pred HhcchhhcCCCEEEEcCCCccHHHHHHHHhCcceEEEEech-HHHHHHHHHHHhcCcc------------ceEEEeecce
Confidence 44567789999999999999999999999999999999995 5669999999999977 4567776665
Q ss_pred CCCCcCCCCCCCCCEEEE---cccccCCCChHHHHHHHHHHhccCCCCc----cccccCCCCccc
Q 038343 94 ESASESGLSAFVPEIILG---ADILYDRSCFPDLVRILAILLNRRKSVS----SSRKESSKGFTL 151 (191)
Q Consensus 94 ~~~~~~~~~~~~fDvIi~---~d~ly~~~~~~~ll~~l~~ll~~~g~~~----~~~~~~~~~~~~ 151 (191)
++. .++..+.|+|++ ..++++..+++.++-.-.+.|+|+|-.. .++.++.+..+.
T Consensus 119 Edi---~LP~eKVDiIvSEWMGy~Ll~EsMldsVl~ARdkwL~~~G~i~P~~a~l~l~~i~d~~~ 180 (346)
T KOG1499|consen 119 EDI---ELPVEKVDIIVSEWMGYFLLYESMLDSVLYARDKWLKEGGLIYPDRATLYLAAIEDDSY 180 (346)
T ss_pred EEE---ecCccceeEEeehhhhHHHHHhhhhhhhhhhhhhccCCCceEccccceEEEEeccCchh
Confidence 544 244568999997 4466678899999999999999997533 444455444443
|
|
| >PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C | Back alignment and domain information |
|---|
Probab=99.41 E-value=3e-13 Score=98.37 Aligned_cols=91 Identities=18% Similarity=0.142 Sum_probs=70.8
Q ss_pred CCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcC
Q 038343 20 IFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASES 99 (191)
Q Consensus 20 ~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~ 99 (191)
..++.+|||+|||+|..+..+++.|. +|+++|+++.+++. .+. .....+-.. .
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~g~D~~~~~~~~------~~~-----------------~~~~~~~~~---~ 72 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKRGF-EVTGVDISPQMIEK------RNV-----------------VFDNFDAQD---P 72 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHTTS-EEEEEESSHHHHHH------TTS-----------------EEEEEECHT---H
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHhCC-EEEEEECCHHHHhh------hhh-----------------hhhhhhhhh---h
Confidence 45678999999999999998899988 99999999998877 110 111111000 0
Q ss_pred CCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCC
Q 038343 100 GLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKS 137 (191)
Q Consensus 100 ~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~ 137 (191)
...+++||+|++++++++..+...+++.+.++|+|+|.
T Consensus 73 ~~~~~~fD~i~~~~~l~~~~d~~~~l~~l~~~LkpgG~ 110 (161)
T PF13489_consen 73 PFPDGSFDLIICNDVLEHLPDPEEFLKELSRLLKPGGY 110 (161)
T ss_dssp HCHSSSEEEEEEESSGGGSSHHHHHHHHHHHCEEEEEE
T ss_pred hccccchhhHhhHHHHhhcccHHHHHHHHHHhcCCCCE
Confidence 12346899999999999999999999999999999974
|
... |
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.5e-12 Score=101.02 Aligned_cols=96 Identities=14% Similarity=0.053 Sum_probs=75.3
Q ss_pred CCCCcEEEeCCCccHHHHHHHhcC-CCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcC
Q 038343 21 FSNKSCFEVGSGVGLVGICLAHVK-ASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASES 99 (191)
Q Consensus 21 ~~~~~VLElG~GtG~~~~~la~~g-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~ 99 (191)
.++.+|||+|||+|.++..+++.. ..+|+++|+++.+++.++++ + +.+...|..+..
T Consensus 28 ~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~----~----------------~~~~~~d~~~~~-- 85 (255)
T PRK14103 28 ERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER----G----------------VDARTGDVRDWK-- 85 (255)
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc----C----------------CcEEEcChhhCC--
Confidence 467799999999999998887762 23899999999999888642 1 234444443221
Q ss_pred CCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCcc
Q 038343 100 GLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVSS 140 (191)
Q Consensus 100 ~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~~ 140 (191)
..++||+|+++.++++..+...+++.+.++|+|||....
T Consensus 86 --~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~ 124 (255)
T PRK14103 86 --PKPDTDVVVSNAALQWVPEHADLLVRWVDELAPGSWIAV 124 (255)
T ss_pred --CCCCceEEEEehhhhhCCCHHHHHHHHHHhCCCCcEEEE
Confidence 235899999999999999999999999999999987554
|
|
| >PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.8e-12 Score=98.52 Aligned_cols=112 Identities=18% Similarity=0.140 Sum_probs=87.4
Q ss_pred HHHHhhCCCCCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEe
Q 038343 11 SEFILSFPEIFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVH 90 (191)
Q Consensus 11 ~~~l~~~~~~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ 90 (191)
.+|+....+..++.+|||+|||+|..+..+++.+. +|+++|.++.+++.+++++..++. .+.+..
T Consensus 37 ~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~--------------~~~~~~ 101 (233)
T PRK05134 37 LNYIREHAGGLFGKRVLDVGCGGGILSESMARLGA-DVTGIDASEENIEVARLHALESGL--------------KIDYRQ 101 (233)
T ss_pred HHHHHHhccCCCCCeEEEeCCCCCHHHHHHHHcCC-eEEEEcCCHHHHHHHHHHHHHcCC--------------ceEEEe
Confidence 34555555456788999999999999998888876 899999999999999988876553 244455
Q ss_pred ecCCCCCcCCCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCc
Q 038343 91 LPWESASESGLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVS 139 (191)
Q Consensus 91 ldw~~~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~ 139 (191)
.++.+... ...++||+|+++.++++..+...+++.+.++|+|+|...
T Consensus 102 ~~~~~~~~--~~~~~fD~Ii~~~~l~~~~~~~~~l~~~~~~L~~gG~l~ 148 (233)
T PRK05134 102 TTAEELAA--EHPGQFDVVTCMEMLEHVPDPASFVRACAKLVKPGGLVF 148 (233)
T ss_pred cCHHHhhh--hcCCCccEEEEhhHhhccCCHHHHHHHHHHHcCCCcEEE
Confidence 55543321 123589999999999999999999999999999998643
|
|
| >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.41 E-value=8.7e-12 Score=95.74 Aligned_cols=97 Identities=22% Similarity=0.192 Sum_probs=75.2
Q ss_pred CCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcC
Q 038343 20 IFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASES 99 (191)
Q Consensus 20 ~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~ 99 (191)
..++.+|||+|||+|..+..+++.+. +|+++|+++.++..+++++..+... .++.+...|+.+..
T Consensus 53 ~~~~~~vLDiGcG~G~~~~~la~~~~-~v~gvD~s~~~i~~a~~~~~~~~~~------------~~i~~~~~d~~~~~-- 117 (219)
T TIGR02021 53 PLKGKRVLDAGCGTGLLSIELAKRGA-IVKAVDISEQMVQMARNRAQGRDVA------------GNVEFEVNDLLSLC-- 117 (219)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCC------------CceEEEECChhhCC--
Confidence 34678999999999999998888866 8999999999999999988766532 24666776665432
Q ss_pred CCCCCCCCEEEEcccccCCC--ChHHHHHHHHHHhccC
Q 038343 100 GLSAFVPEIILGADILYDRS--CFPDLVRILAILLNRR 135 (191)
Q Consensus 100 ~~~~~~fDvIi~~d~ly~~~--~~~~ll~~l~~ll~~~ 135 (191)
.+||+|++.+++++.+ ....+++.+.++++++
T Consensus 118 ----~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~ 151 (219)
T TIGR02021 118 ----GEFDIVVCMDVLIHYPASDMAKALGHLASLTKER 151 (219)
T ss_pred ----CCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCC
Confidence 5799999999987643 3566677777776644
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM. |
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=6.8e-12 Score=96.85 Aligned_cols=119 Identities=14% Similarity=0.043 Sum_probs=88.2
Q ss_pred ccHHHHHHHHhhCCCCCCCCcEEEeCCCccHHHHHHHhcC--CCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCC
Q 038343 5 PSSLLLSEFILSFPEIFSNKSCFEVGSGVGLVGICLAHVK--ASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYED 82 (191)
Q Consensus 5 ~~a~~L~~~l~~~~~~~~~~~VLElG~GtG~~~~~la~~g--~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~ 82 (191)
|-...+-+.+.......++.+|||+|||+|..+..++... ..+|+++|.++.+++.++++.....
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~------------- 68 (241)
T PRK08317 2 PDFRRYRARTFELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLG------------- 68 (241)
T ss_pred chHHHHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCC-------------
Confidence 3334444455555555678899999999999888776642 3489999999999999987732221
Q ss_pred CCeeEEEeecCCCCCcCCCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCcc
Q 038343 83 PNVVQCVHLPWESASESGLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVSS 140 (191)
Q Consensus 83 ~~~i~~~~ldw~~~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~~ 140 (191)
.++.+...|..... +..++||+|++..++.+..+...+++.+.++|+|+|....
T Consensus 69 -~~~~~~~~d~~~~~---~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~ 122 (241)
T PRK08317 69 -PNVEFVRGDADGLP---FPDGSFDAVRSDRVLQHLEDPARALAEIARVLRPGGRVVV 122 (241)
T ss_pred -CceEEEecccccCC---CCCCCceEEEEechhhccCCHHHHHHHHHHHhcCCcEEEE
Confidence 24566666654322 3446899999999999999999999999999999986543
|
|
| >PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.39 E-value=6.4e-12 Score=99.08 Aligned_cols=119 Identities=16% Similarity=0.141 Sum_probs=82.2
Q ss_pred cccHHHHHHHHhhCCCCCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCC
Q 038343 4 WPSSLLLSEFILSFPEIFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDP 83 (191)
Q Consensus 4 W~~a~~L~~~l~~~~~~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~ 83 (191)
|.+-..-.. +..+...+.|++|||+|||.|..+.-++..|++.|+++|.++..+-+.+..-..-+..
T Consensus 98 WrSd~KW~r-l~p~l~~L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~~------------ 164 (315)
T PF08003_consen 98 WRSDWKWDR-LLPHLPDLKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQD------------ 164 (315)
T ss_pred ccccchHHH-HHhhhCCcCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCCC------------
Confidence 444443333 2233335789999999999999999999999999999998765543322211111111
Q ss_pred CeeEEEeecCCCCCcCCCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCc
Q 038343 84 NVVQCVHLPWESASESGLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVS 139 (191)
Q Consensus 84 ~~i~~~~ldw~~~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~ 139 (191)
..+....+..++... .+.||+|++..|+||..++-..|+.++..|++||...
T Consensus 165 ~~~~~lplgvE~Lp~----~~~FDtVF~MGVLYHrr~Pl~~L~~Lk~~L~~gGeLv 216 (315)
T PF08003_consen 165 PPVFELPLGVEDLPN----LGAFDTVFSMGVLYHRRSPLDHLKQLKDSLRPGGELV 216 (315)
T ss_pred ccEEEcCcchhhccc----cCCcCEEEEeeehhccCCHHHHHHHHHHhhCCCCEEE
Confidence 123333344444322 3579999999999999999999999999999998533
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification |
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.8e-11 Score=94.63 Aligned_cols=102 Identities=20% Similarity=0.099 Sum_probs=82.8
Q ss_pred CCCcEEEeCCCccHHHHHHHhcCC--CeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcC
Q 038343 22 SNKSCFEVGSGVGLVGICLAHVKA--SKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASES 99 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~g~--~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~ 99 (191)
++.+|||+|||+|..+..++..+. .+|+++|+++.+++.+++++..++.. ..+.+...++.+..
T Consensus 51 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~------------~~~~~~~~d~~~~~-- 116 (239)
T PRK00216 51 PGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLS------------GNVEFVQGDAEALP-- 116 (239)
T ss_pred CCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccc------------cCeEEEecccccCC--
Confidence 567999999999999998877653 59999999999999999987664432 34666666665432
Q ss_pred CCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCC
Q 038343 100 GLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSV 138 (191)
Q Consensus 100 ~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~ 138 (191)
...+.||+|+++.++++..+...+++.+.++|+|+|..
T Consensus 117 -~~~~~~D~I~~~~~l~~~~~~~~~l~~~~~~L~~gG~l 154 (239)
T PRK00216 117 -FPDNSFDAVTIAFGLRNVPDIDKALREMYRVLKPGGRL 154 (239)
T ss_pred -CCCCCccEEEEecccccCCCHHHHHHHHHHhccCCcEE
Confidence 23468999999999999999999999999999999753
|
|
| >PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins | Back alignment and domain information |
|---|
Probab=99.39 E-value=1e-12 Score=97.54 Aligned_cols=93 Identities=18% Similarity=0.136 Sum_probs=69.1
Q ss_pred CcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCCCCC
Q 038343 24 KSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESGLSA 103 (191)
Q Consensus 24 ~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~~~~ 103 (191)
.++||+|||.|.++..++... .+++++|+++.+++.+++.+... .++.+...+..+. .+.
T Consensus 45 ~~alEvGCs~G~lT~~LA~rC-d~LlavDis~~Al~~Ar~Rl~~~---------------~~V~~~~~dvp~~----~P~ 104 (201)
T PF05401_consen 45 RRALEVGCSIGVLTERLAPRC-DRLLAVDISPRALARARERLAGL---------------PHVEWIQADVPEF----WPE 104 (201)
T ss_dssp EEEEEE--TTSHHHHHHGGGE-EEEEEEES-HHHHHHHHHHTTT----------------SSEEEEES-TTT-------S
T ss_pred ceeEecCCCccHHHHHHHHhh-CceEEEeCCHHHHHHHHHhcCCC---------------CCeEEEECcCCCC----CCC
Confidence 479999999999999998884 59999999999999998766432 3578888876443 355
Q ss_pred CCCCEEEEcccccCCCCh---HHHHHHHHHHhccCC
Q 038343 104 FVPEIILGADILYDRSCF---PDLVRILAILLNRRK 136 (191)
Q Consensus 104 ~~fDvIi~~d~ly~~~~~---~~ll~~l~~ll~~~g 136 (191)
++||+|+.++++|+..+. ..++..+...|+|+|
T Consensus 105 ~~FDLIV~SEVlYYL~~~~~L~~~l~~l~~~L~pgG 140 (201)
T PF05401_consen 105 GRFDLIVLSEVLYYLDDAEDLRAALDRLVAALAPGG 140 (201)
T ss_dssp S-EEEEEEES-GGGSSSHHHHHHHHHHHHHTEEEEE
T ss_pred CCeeEEEEehHhHcCCCHHHHHHHHHHHHHHhCCCC
Confidence 789999999999998764 457788888999997
|
The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A. |
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.2e-11 Score=100.84 Aligned_cols=100 Identities=21% Similarity=0.207 Sum_probs=77.2
Q ss_pred CCcEEEeCCCccHHHHHHHhcCC-CeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCCC
Q 038343 23 NKSCFEVGSGVGLVGICLAHVKA-SKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESGL 101 (191)
Q Consensus 23 ~~~VLElG~GtG~~~~~la~~g~-~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~~ 101 (191)
..+|||+|||+|.+++.+++.++ .+|+++|+++.+++.+++|++.|++. ..+...|....
T Consensus 197 ~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~--------------~~~~~~D~~~~----- 257 (342)
T PRK09489 197 KGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLE--------------GEVFASNVFSD----- 257 (342)
T ss_pred CCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC--------------CEEEEcccccc-----
Confidence 34799999999999998888754 48999999999999999999998754 22333332211
Q ss_pred CCCCCCEEEEcccccCC-----CChHHHHHHHHHHhccCCCCccc
Q 038343 102 SAFVPEIILGADILYDR-----SCFPDLVRILAILLNRRKSVSSS 141 (191)
Q Consensus 102 ~~~~fDvIi~~d~ly~~-----~~~~~ll~~l~~ll~~~g~~~~~ 141 (191)
..++||+|+++.++++. ...+.+++...+.|+|||....+
T Consensus 258 ~~~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iV 302 (342)
T PRK09489 258 IKGRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIV 302 (342)
T ss_pred cCCCccEEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEE
Confidence 13579999998887753 34578899999999999876544
|
|
| >TIGR00095 RNA methyltransferase, RsmD family | Back alignment and domain information |
|---|
Probab=99.39 E-value=4.6e-12 Score=95.20 Aligned_cols=104 Identities=15% Similarity=0.103 Sum_probs=75.4
Q ss_pred CCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcC
Q 038343 20 IFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASES 99 (191)
Q Consensus 20 ~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~ 99 (191)
..++.+||||+||+|.+|+.+++.|+++|+++|.++.+++.+++|++.++.. .++.+...|..+....
T Consensus 47 ~~~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~------------~~~~~~~~D~~~~l~~ 114 (189)
T TIGR00095 47 EIQGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSG------------EQAEVVRNSALRALKF 114 (189)
T ss_pred hcCCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCc------------ccEEEEehhHHHHHHH
Confidence 3578899999999999999999999989999999999999999999999854 2456666554322111
Q ss_pred CCCCCCCCEEEEcccccCCCChHHHHHHHHH--HhccC
Q 038343 100 GLSAFVPEIILGADILYDRSCFPDLVRILAI--LLNRR 135 (191)
Q Consensus 100 ~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~--ll~~~ 135 (191)
.....+++.|+..|..|.....+.+++.+.. +++++
T Consensus 115 ~~~~~~~~dvv~~DPPy~~~~~~~~l~~l~~~~~l~~~ 152 (189)
T TIGR00095 115 LAKKPTFDNVIYLDPPFFNGALQALLELCENNWILEDT 152 (189)
T ss_pred hhccCCCceEEEECcCCCCCcHHHHHHHHHHCCCCCCC
Confidence 1112234455556888887777777776654 45444
|
This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases. |
| >PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.3e-11 Score=104.24 Aligned_cols=107 Identities=17% Similarity=0.111 Sum_probs=75.9
Q ss_pred HHHHHHHHhhCCCCCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCee
Q 038343 7 SLLLSEFILSFPEIFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVV 86 (191)
Q Consensus 7 a~~L~~~l~~~~~~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i 86 (191)
+..|.+.+.......++.+|||+|||+|.+++.+++.+ .+|+++|+++.+++.+++|++.|+.. ++
T Consensus 282 ~e~l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~~-~~V~gvD~s~~al~~A~~n~~~~~~~-------------~v 347 (443)
T PRK13168 282 NQKMVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQA-AEVVGVEGVEAMVERARENARRNGLD-------------NV 347 (443)
T ss_pred HHHHHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCC-------------ce
Confidence 34555555554444467799999999999999998886 49999999999999999999988753 47
Q ss_pred EEEeecCCCCCcC-CCCCCCCCEEEEcccccCCCChHHHHHHHHH
Q 038343 87 QCVHLPWESASES-GLSAFVPEIILGADILYDRSCFPDLVRILAI 130 (191)
Q Consensus 87 ~~~~ldw~~~~~~-~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ 130 (191)
.+...|+.+.... .+.+.+||+|++ |.-|.. ....++.+.+
T Consensus 348 ~~~~~d~~~~l~~~~~~~~~fD~Vi~-dPPr~g--~~~~~~~l~~ 389 (443)
T PRK13168 348 TFYHANLEEDFTDQPWALGGFDKVLL-DPPRAG--AAEVMQALAK 389 (443)
T ss_pred EEEEeChHHhhhhhhhhcCCCCEEEE-CcCCcC--hHHHHHHHHh
Confidence 7888887543211 123357999987 444432 2344454444
|
|
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.9e-11 Score=84.10 Aligned_cols=106 Identities=16% Similarity=0.118 Sum_probs=76.0
Q ss_pred HhhCCCCCCCCcEEEeCCCccHHHHHHHhc-CCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeec
Q 038343 14 ILSFPEIFSNKSCFEVGSGVGLVGICLAHV-KASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLP 92 (191)
Q Consensus 14 l~~~~~~~~~~~VLElG~GtG~~~~~la~~-g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ld 92 (191)
+.......++.+|||+|||+|..+..+++. +..+|+++|+++.+++.++++++.++.. ++.+...+
T Consensus 11 ~~~~~~~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-------------~~~~~~~~ 77 (124)
T TIGR02469 11 TLSKLRLRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVS-------------NIVIVEGD 77 (124)
T ss_pred HHHHcCCCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCC-------------ceEEEecc
Confidence 333333345679999999999999987775 3358999999999999999998877643 34455444
Q ss_pred CCCCCcCCCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCC
Q 038343 93 WESASESGLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKS 137 (191)
Q Consensus 93 w~~~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~ 137 (191)
...... ....+||+|++... ......+++.+.++|+|+|.
T Consensus 78 ~~~~~~--~~~~~~D~v~~~~~---~~~~~~~l~~~~~~Lk~gG~ 117 (124)
T TIGR02469 78 APEALE--DSLPEPDRVFIGGS---GGLLQEILEAIWRRLRPGGR 117 (124)
T ss_pred ccccCh--hhcCCCCEEEECCc---chhHHHHHHHHHHHcCCCCE
Confidence 332111 11247999998543 23457899999999999974
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.37 E-value=4.7e-11 Score=89.54 Aligned_cols=98 Identities=15% Similarity=0.081 Sum_probs=74.9
Q ss_pred CCCCCcEEEeCCCccHHHHHHHhcCC-CeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCc
Q 038343 20 IFSNKSCFEVGSGVGLVGICLAHVKA-SKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASE 98 (191)
Q Consensus 20 ~~~~~~VLElG~GtG~~~~~la~~g~-~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~ 98 (191)
..++.+|||+|||+|.+++.+++.+. .+|+++|.++.+++.+++|++.++.. ++.+...+....
T Consensus 29 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~-------------~i~~~~~d~~~~-- 93 (187)
T PRK08287 29 LHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCG-------------NIDIIPGEAPIE-- 93 (187)
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCC-------------CeEEEecCchhh--
Confidence 34677999999999999998877643 48999999999999999999887643 355555543211
Q ss_pred CCCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCC
Q 038343 99 SGLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSV 138 (191)
Q Consensus 99 ~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~ 138 (191)
+ ..+||+|++.... ..+..+++.+.++|+|+|..
T Consensus 94 --~-~~~~D~v~~~~~~---~~~~~~l~~~~~~Lk~gG~l 127 (187)
T PRK08287 94 --L-PGKADAIFIGGSG---GNLTAIIDWSLAHLHPGGRL 127 (187)
T ss_pred --c-CcCCCEEEECCCc---cCHHHHHHHHHHhcCCCeEE
Confidence 1 2479999986543 34678999999999999753
|
|
| >COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.37 E-value=8.5e-12 Score=91.79 Aligned_cols=80 Identities=21% Similarity=0.162 Sum_probs=66.1
Q ss_pred CCCCCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCC
Q 038343 17 FPEIFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESA 96 (191)
Q Consensus 17 ~~~~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~ 96 (191)
......++.|+|||||||.+++.++.+|+++|+++|+++++++.+++|+.... ..+.+...|..+.
T Consensus 40 ~~g~l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l~--------------g~v~f~~~dv~~~ 105 (198)
T COG2263 40 LRGDLEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEELL--------------GDVEFVVADVSDF 105 (198)
T ss_pred HcCCcCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhhC--------------CceEEEEcchhhc
Confidence 34456888999999999999999999999999999999999999999998844 3577777776554
Q ss_pred CcCCCCCCCCCEEEEccccc
Q 038343 97 SESGLSAFVPEIILGADILY 116 (191)
Q Consensus 97 ~~~~~~~~~fDvIi~~d~ly 116 (191)
. .++|.++.+..+=
T Consensus 106 ~------~~~dtvimNPPFG 119 (198)
T COG2263 106 R------GKFDTVIMNPPFG 119 (198)
T ss_pred C------CccceEEECCCCc
Confidence 3 5788888866654
|
|
| >PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A | Back alignment and domain information |
|---|
Probab=99.36 E-value=7.4e-13 Score=91.58 Aligned_cols=101 Identities=21% Similarity=0.167 Sum_probs=78.7
Q ss_pred CCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCCCC
Q 038343 23 NKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESGLS 102 (191)
Q Consensus 23 ~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~~~ 102 (191)
|.+|||+|||+|.+.+.+++.+..+++++|+++.+++.++.|+..++.. .++++...|+.+.. ..+.
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~------------~~~~~~~~D~~~~~-~~~~ 67 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLD------------DRVEVIVGDARDLP-EPLP 67 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTT------------TTEEEEESHHHHHH-HTCT
T ss_pred CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCC------------ceEEEEECchhhch-hhcc
Confidence 4589999999999999888887569999999999999999999988764 45778888775442 2245
Q ss_pred CCCCCEEEEcccccCCC--------ChHHHHHHHHHHhccCC
Q 038343 103 AFVPEIILGADILYDRS--------CFPDLVRILAILLNRRK 136 (191)
Q Consensus 103 ~~~fDvIi~~d~ly~~~--------~~~~ll~~l~~ll~~~g 136 (191)
..+||+|+++..+.... ....+++.+.++|+|+|
T Consensus 68 ~~~~D~Iv~npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG 109 (117)
T PF13659_consen 68 DGKFDLIVTNPPYGPRSGDKAALRRLYSRFLEAAARLLKPGG 109 (117)
T ss_dssp TT-EEEEEE--STTSBTT----GGCHHHHHHHHHHHHEEEEE
T ss_pred CceeEEEEECCCCccccccchhhHHHHHHHHHHHHHHcCCCe
Confidence 57899999976665321 34678999999999996
|
... |
| >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.5e-11 Score=95.59 Aligned_cols=89 Identities=25% Similarity=0.213 Sum_probs=64.7
Q ss_pred HHHHHHHHhhCCCCCCCCcEEEeCCCccHHHHHHHhcCCC-eEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCe
Q 038343 7 SLLLSEFILSFPEIFSNKSCFEVGSGVGLVGICLAHVKAS-KVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNV 85 (191)
Q Consensus 7 a~~L~~~l~~~~~~~~~~~VLElG~GtG~~~~~la~~g~~-~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~ 85 (191)
+..|.+.+......... +|||||||||.+++.+++.... +|+++|+|+.+++.+++|+..|++. +
T Consensus 96 Te~Lve~~l~~~~~~~~-~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~-------------~ 161 (280)
T COG2890 96 TELLVEAALALLLQLDK-RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLV-------------R 161 (280)
T ss_pred hHHHHHHHHHhhhhcCC-cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCc-------------c
Confidence 45555554321111112 7999999999999988887653 9999999999999999999999863 2
Q ss_pred eEEEeecCCCCCcCCCCCCCCCEEEEccc
Q 038343 86 VQCVHLPWESASESGLSAFVPEIILGADI 114 (191)
Q Consensus 86 i~~~~ldw~~~~~~~~~~~~fDvIi~~d~ 114 (191)
+.+...||.+... ++||+|+++..
T Consensus 162 ~~~~~~dlf~~~~-----~~fDlIVsNPP 185 (280)
T COG2890 162 VLVVQSDLFEPLR-----GKFDLIVSNPP 185 (280)
T ss_pred EEEEeeecccccC-----CceeEEEeCCC
Confidence 3344448876532 38999999654
|
|
| >PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.3e-11 Score=93.23 Aligned_cols=99 Identities=15% Similarity=0.179 Sum_probs=72.2
Q ss_pred CCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCC
Q 038343 21 FSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESG 100 (191)
Q Consensus 21 ~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~ 100 (191)
.++.+|||||||+|.+++.++..++.+|+++|.++.+++.+++|++.++.. ++.+...|+.+....
T Consensus 52 ~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~~-------------~v~~~~~D~~~~l~~- 117 (199)
T PRK10909 52 IVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKAG-------------NARVVNTNALSFLAQ- 117 (199)
T ss_pred cCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCC-------------cEEEEEchHHHHHhh-
Confidence 356799999999999999655556679999999999999999999998753 366666665432211
Q ss_pred CCCCCCCEEEEcccccCCCChHHHHHHHHHH--hccC
Q 038343 101 LSAFVPEIILGADILYDRSCFPDLVRILAIL--LNRR 135 (191)
Q Consensus 101 ~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~l--l~~~ 135 (191)
...+||+|++ |.-|.....+.+++.+... ++++
T Consensus 118 -~~~~fDlV~~-DPPy~~g~~~~~l~~l~~~~~l~~~ 152 (199)
T PRK10909 118 -PGTPHNVVFV-DPPFRKGLLEETINLLEDNGWLADE 152 (199)
T ss_pred -cCCCceEEEE-CCCCCCChHHHHHHHHHHCCCcCCC
Confidence 1246999997 4447666666666666552 4554
|
|
| >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.5e-11 Score=94.46 Aligned_cols=102 Identities=20% Similarity=0.188 Sum_probs=81.0
Q ss_pred CCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCC
Q 038343 21 FSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESG 100 (191)
Q Consensus 21 ~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~ 100 (191)
..+.+|||+|||+|..+..+++.+. +|+++|.++.+++.+++++..++.. ++.+...+..+....
T Consensus 44 ~~~~~vLdlG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~-------------~~~~~~~d~~~~~~~- 108 (224)
T TIGR01983 44 LFGLRVLDVGCGGGLLSEPLARLGA-NVTGIDASEENIEVAKLHAKKDPLL-------------KIEYRCTSVEDLAEK- 108 (224)
T ss_pred CCCCeEEEECCCCCHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHHcCCC-------------ceEEEeCCHHHhhcC-
Confidence 4577999999999999988888776 7999999999999999888776531 244455544332211
Q ss_pred CCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCC
Q 038343 101 LSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSV 138 (191)
Q Consensus 101 ~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~ 138 (191)
..++||+|+++.++++..+...+++.+.++|+++|..
T Consensus 109 -~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~~gG~l 145 (224)
T TIGR01983 109 -GAKSFDVVTCMEVLEHVPDPQAFIRACAQLLKPGGIL 145 (224)
T ss_pred -CCCCccEEEehhHHHhCCCHHHHHHHHHHhcCCCcEE
Confidence 1358999999999999999999999999999999753
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase. |
| >PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A | Back alignment and domain information |
|---|
Probab=99.35 E-value=8.1e-13 Score=89.31 Aligned_cols=94 Identities=20% Similarity=0.182 Sum_probs=68.9
Q ss_pred EEEeCCCccHHHHHHHhc---CC-CeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCCC
Q 038343 26 CFEVGSGVGLVGICLAHV---KA-SKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESGL 101 (191)
Q Consensus 26 VLElG~GtG~~~~~la~~---g~-~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~~ 101 (191)
|||+|||+|.....+.+. +. .+++++|+++++++.++++....+. ++++...|..+.. .
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~--------------~~~~~~~D~~~l~---~ 63 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP--------------KVRFVQADARDLP---F 63 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT--------------TSEEEESCTTCHH---H
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC--------------ceEEEECCHhHCc---c
Confidence 799999999888877765 32 5999999999999999988876543 3566777775532 2
Q ss_pred CCCCCCEEEEccc-ccCC--CChHHHHHHHHHHhccCC
Q 038343 102 SAFVPEIILGADI-LYDR--SCFPDLVRILAILLNRRK 136 (191)
Q Consensus 102 ~~~~fDvIi~~d~-ly~~--~~~~~ll~~l~~ll~~~g 136 (191)
..++||+|+++.. +++. +....+++.+.++|+|+|
T Consensus 64 ~~~~~D~v~~~~~~~~~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 64 SDGKFDLVVCSGLSLHHLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp HSSSEEEEEE-TTGGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred cCCCeeEEEEcCCccCCCCHHHHHHHHHHHHHHhCCCC
Confidence 3458999999544 5543 457889999999999985
|
|
| >PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=8.5e-12 Score=97.58 Aligned_cols=101 Identities=10% Similarity=0.102 Sum_probs=78.0
Q ss_pred CCCcEEEeCCCccHHHHHHHhc---CCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCc
Q 038343 22 SNKSCFEVGSGVGLVGICLAHV---KASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASE 98 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~---g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~ 98 (191)
++.+|||+|||+|..+..+++. ...+|+++|.++.|++.+++++..++.. .++.+...+..+..
T Consensus 56 ~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~------------~~v~~~~~d~~~~~- 122 (247)
T PRK15451 56 PGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAP------------TPVDVIEGDIRDIA- 122 (247)
T ss_pred CCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCC------------CCeEEEeCChhhCC-
Confidence 5679999999999988877652 2248999999999999999998876643 35677776655432
Q ss_pred CCCCCCCCCEEEEcccccCCC--ChHHHHHHHHHHhccCCCCc
Q 038343 99 SGLSAFVPEIILGADILYDRS--CFPDLVRILAILLNRRKSVS 139 (191)
Q Consensus 99 ~~~~~~~fDvIi~~d~ly~~~--~~~~ll~~l~~ll~~~g~~~ 139 (191)
...+|+|+++-++++.+ ....+++.+.+.|+|||...
T Consensus 123 ----~~~~D~vv~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~ 161 (247)
T PRK15451 123 ----IENASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALV 161 (247)
T ss_pred ----CCCCCEEehhhHHHhCCHHHHHHHHHHHHHhcCCCCEEE
Confidence 23599999988887654 34689999999999998644
|
|
| >TIGR02072 BioC biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.1e-11 Score=95.80 Aligned_cols=98 Identities=18% Similarity=0.120 Sum_probs=77.1
Q ss_pred CCCcEEEeCCCccHHHHHHHhcCC-CeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCC
Q 038343 22 SNKSCFEVGSGVGLVGICLAHVKA-SKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESG 100 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~g~-~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~ 100 (191)
.+.+|||+|||+|..+..+++.+. .+|+++|.++.+++.++.+... ++.+...|..+..
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~-----------------~~~~~~~d~~~~~--- 93 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLSE-----------------NVQFICGDAEKLP--- 93 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcCC-----------------CCeEEecchhhCC---
Confidence 457899999999999888887654 3789999999999888765431 2445555554332
Q ss_pred CCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCc
Q 038343 101 LSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVS 139 (191)
Q Consensus 101 ~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~ 139 (191)
+.+++||+|+++.++++..+...+++.+.++|+|+|...
T Consensus 94 ~~~~~fD~vi~~~~l~~~~~~~~~l~~~~~~L~~~G~l~ 132 (240)
T TIGR02072 94 LEDSSFDLIVSNLALQWCDDLSQALSELARVLKPGGLLA 132 (240)
T ss_pred CCCCceeEEEEhhhhhhccCHHHHHHHHHHHcCCCcEEE
Confidence 244689999999999999999999999999999998544
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. |
| >KOG4300 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.34 E-value=9.9e-12 Score=92.48 Aligned_cols=98 Identities=15% Similarity=0.025 Sum_probs=75.4
Q ss_pred cEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeE-EEeecCCCCCcCCCCC
Q 038343 25 SCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQ-CVHLPWESASESGLSA 103 (191)
Q Consensus 25 ~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~-~~~ldw~~~~~~~~~~ 103 (191)
.|||+|||||..--+.-.....+||++|.++.|-+.+.+.++.+... ++. +...+-++.. ++.+
T Consensus 79 ~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~-------------~~~~fvva~ge~l~--~l~d 143 (252)
T KOG4300|consen 79 DVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKPL-------------QVERFVVADGENLP--QLAD 143 (252)
T ss_pred ceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccCc-------------ceEEEEeechhcCc--cccc
Confidence 68999999995544333222349999999999999999988887543 233 3333333222 3567
Q ss_pred CCCCEEEEcccccCCCChHHHHHHHHHHhccCCC
Q 038343 104 FVPEIILGADILYDRSCFPDLVRILAILLNRRKS 137 (191)
Q Consensus 104 ~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~ 137 (191)
++||+|+++=++....+....|+.++++|+|+|.
T Consensus 144 ~s~DtVV~TlvLCSve~~~k~L~e~~rlLRpgG~ 177 (252)
T KOG4300|consen 144 GSYDTVVCTLVLCSVEDPVKQLNEVRRLLRPGGR 177 (252)
T ss_pred CCeeeEEEEEEEeccCCHHHHHHHHHHhcCCCcE
Confidence 8999999999999999999999999999999974
|
|
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.6e-11 Score=99.71 Aligned_cols=100 Identities=15% Similarity=0.109 Sum_probs=78.7
Q ss_pred CCCcEEEeCCCccHHHHHHHhc-CCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCC
Q 038343 22 SNKSCFEVGSGVGLVGICLAHV-KASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESG 100 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~-g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~ 100 (191)
++.+|||+|||+|..++.+++. +..+|+++|.++.+++.++++...+ ++.+...|..+. .
T Consensus 113 ~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~~----------------~i~~i~gD~e~l---p 173 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLK----------------ECKIIEGDAEDL---P 173 (340)
T ss_pred CCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhcc----------------CCeEEeccHHhC---C
Confidence 5679999999999988866653 4458999999999999998875422 244555555432 2
Q ss_pred CCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCcc
Q 038343 101 LSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVSS 140 (191)
Q Consensus 101 ~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~~ 140 (191)
+.+++||+|+++.++++..+.+.+++.+.++|+|||....
T Consensus 174 ~~~~sFDvVIs~~~L~~~~d~~~~L~e~~rvLkPGG~LvI 213 (340)
T PLN02490 174 FPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACL 213 (340)
T ss_pred CCCCceeEEEEcChhhhCCCHHHHHHHHHHhcCCCcEEEE
Confidence 3456899999999999988999999999999999987543
|
|
| >PLN02585 magnesium protoporphyrin IX methyltransferase | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.3e-11 Score=98.03 Aligned_cols=95 Identities=17% Similarity=0.103 Sum_probs=67.9
Q ss_pred CCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCC
Q 038343 21 FSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESG 100 (191)
Q Consensus 21 ~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~ 100 (191)
.++.+|||+|||+|..++.+++.|. +|+++|+++.|++.++++......... ....+.+...|+.+.
T Consensus 143 ~~~~~VLDlGcGtG~~a~~la~~g~-~V~gvD~S~~ml~~A~~~~~~~~~~~~--------~~~~~~f~~~Dl~~l---- 209 (315)
T PLN02585 143 LAGVTVCDAGCGTGSLAIPLALEGA-IVSASDISAAMVAEAERRAKEALAALP--------PEVLPKFEANDLESL---- 209 (315)
T ss_pred CCCCEEEEecCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcccccc--------cccceEEEEcchhhc----
Confidence 3577999999999999999999876 899999999999999998765421100 002355666665432
Q ss_pred CCCCCCCEEEEcccccCCCC--hHHHHHHHHH
Q 038343 101 LSAFVPEIILGADILYDRSC--FPDLVRILAI 130 (191)
Q Consensus 101 ~~~~~fDvIi~~d~ly~~~~--~~~ll~~l~~ 130 (191)
+++||+|++.+++++.++ ...+++.+.+
T Consensus 210 --~~~fD~Vv~~~vL~H~p~~~~~~ll~~l~~ 239 (315)
T PLN02585 210 --SGKYDTVTCLDVLIHYPQDKADGMIAHLAS 239 (315)
T ss_pred --CCCcCEEEEcCEEEecCHHHHHHHHHHHHh
Confidence 357999999999876544 2334444444
|
|
| >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Probab=99.33 E-value=4.2e-11 Score=95.49 Aligned_cols=100 Identities=19% Similarity=0.138 Sum_probs=75.4
Q ss_pred CCCcEEEeCCCccHHHHHHHhcC-CCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCC
Q 038343 22 SNKSCFEVGSGVGLVGICLAHVK-ASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESG 100 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~g-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~ 100 (191)
++.+|||+|||+|..++.+++.. ..+|+++|+++.+++.+++|++.++.. .++.+...|+.+..
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~------------~~i~~~~~D~~~~~--- 185 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLE------------DRVTLIQSDLFAAL--- 185 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCC------------CcEEEEECchhhcc---
Confidence 34689999999999999888753 248999999999999999999988754 35777887764332
Q ss_pred CCCCCCCEEEEcccccCCC-------------------------ChHHHHHHHHHHhccCCC
Q 038343 101 LSAFVPEIILGADILYDRS-------------------------CFPDLVRILAILLNRRKS 137 (191)
Q Consensus 101 ~~~~~fDvIi~~d~ly~~~-------------------------~~~~ll~~l~~ll~~~g~ 137 (191)
+..+||+|+++....... ....+++.+.++|+|+|.
T Consensus 186 -~~~~fD~Iv~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~ 246 (284)
T TIGR03533 186 -PGRKYDLIVSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGV 246 (284)
T ss_pred -CCCCccEEEECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCE
Confidence 234799999864322111 135678888889999975
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. |
| >PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=8e-11 Score=97.36 Aligned_cols=113 Identities=20% Similarity=0.178 Sum_probs=79.0
Q ss_pred HHHHHHHHhhCCCCCCCCcEEEeCCCccHHHHHHHhc-CCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCe
Q 038343 7 SLLLSEFILSFPEIFSNKSCFEVGSGVGLVGICLAHV-KASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNV 85 (191)
Q Consensus 7 a~~L~~~l~~~~~~~~~~~VLElG~GtG~~~~~la~~-g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~ 85 (191)
+..|.+.+..... ++.+|||+|||+|.+++.+++. ...+|+++|+|+.+++.+++|++.++. +
T Consensus 238 TE~LVe~aL~~l~--~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~--------------r 301 (423)
T PRK14966 238 TEHLVEAVLARLP--ENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGA--------------R 301 (423)
T ss_pred HHHHHHHhhhccC--CCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC--------------c
Confidence 4566666654322 4568999999999999987764 345899999999999999999987762 4
Q ss_pred eEEEeecCCCCCcCCCCCCCCCEEEEcccccCCC-------------------------ChHHHHHHHHHHhccCCC
Q 038343 86 VQCVHLPWESASESGLSAFVPEIILGADILYDRS-------------------------CFPDLVRILAILLNRRKS 137 (191)
Q Consensus 86 i~~~~ldw~~~~~~~~~~~~fDvIi~~d~ly~~~-------------------------~~~~ll~~l~~ll~~~g~ 137 (191)
+.+...||.+... ....+||+|+++....... .+..+++.+.+.|+|+|.
T Consensus 302 V~fi~gDl~e~~l--~~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~ 376 (423)
T PRK14966 302 VEFAHGSWFDTDM--PSEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGF 376 (423)
T ss_pred EEEEEcchhcccc--ccCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcE
Confidence 6778888754321 1124799999966432111 133566666778888874
|
|
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=4.8e-11 Score=90.82 Aligned_cols=107 Identities=17% Similarity=0.074 Sum_probs=76.7
Q ss_pred HHHhhCCCCCCCCcEEEeCCCccHHHHHHHhc-C-CCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEE
Q 038343 12 EFILSFPEIFSNKSCFEVGSGVGLVGICLAHV-K-ASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCV 89 (191)
Q Consensus 12 ~~l~~~~~~~~~~~VLElG~GtG~~~~~la~~-g-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~ 89 (191)
.++.+.....++.+|||+|||+|..+..+++. + ..+|+++|.++++++.+++|+..++.. .++.+.
T Consensus 62 ~~~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~------------~~v~~~ 129 (205)
T PRK13944 62 AMMCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYW------------GVVEVY 129 (205)
T ss_pred HHHHHhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC------------CcEEEE
Confidence 33434333446779999999999998877764 2 248999999999999999999887753 346666
Q ss_pred eecCCCCCcCCCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCc
Q 038343 90 HLPWESASESGLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVS 139 (191)
Q Consensus 90 ~ldw~~~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~ 139 (191)
..|..+... ...+||+|++...+.+ +.+.+.+.|+|||...
T Consensus 130 ~~d~~~~~~---~~~~fD~Ii~~~~~~~------~~~~l~~~L~~gG~lv 170 (205)
T PRK13944 130 HGDGKRGLE---KHAPFDAIIVTAAAST------IPSALVRQLKDGGVLV 170 (205)
T ss_pred ECCcccCCc---cCCCccEEEEccCcch------hhHHHHHhcCcCcEEE
Confidence 666543221 2358999998766543 3357788999998643
|
|
| >TIGR00740 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.7e-11 Score=94.28 Aligned_cols=99 Identities=10% Similarity=0.030 Sum_probs=77.2
Q ss_pred CCCcEEEeCCCccHHHHHHHhc---CCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCc
Q 038343 22 SNKSCFEVGSGVGLVGICLAHV---KASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASE 98 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~---g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~ 98 (191)
++.+|||+|||+|..+..+++. ...+|+++|+++.+++.+++++...+.. .++.+...|+.+..
T Consensus 53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~------------~~v~~~~~d~~~~~- 119 (239)
T TIGR00740 53 PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSE------------IPVEILCNDIRHVE- 119 (239)
T ss_pred CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCC------------CCeEEEECChhhCC-
Confidence 5679999999999988877763 2248999999999999999988765422 34677777775442
Q ss_pred CCCCCCCCCEEEEcccccCCC--ChHHHHHHHHHHhccCCC
Q 038343 99 SGLSAFVPEIILGADILYDRS--CFPDLVRILAILLNRRKS 137 (191)
Q Consensus 99 ~~~~~~~fDvIi~~d~ly~~~--~~~~ll~~l~~ll~~~g~ 137 (191)
...+|+|+++.++++.. +...+++.+.+.|+|||.
T Consensus 120 ----~~~~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpgG~ 156 (239)
T TIGR00740 120 ----IKNASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGV 156 (239)
T ss_pred ----CCCCCEEeeecchhhCCHHHHHHHHHHHHHhcCCCeE
Confidence 13589999988888754 457899999999999974
|
A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily. |
| >TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Probab=99.32 E-value=7.6e-11 Score=92.39 Aligned_cols=115 Identities=14% Similarity=0.046 Sum_probs=76.9
Q ss_pred cHHHHHHHHhhCCC-CCCCCcEEEeCCCccHHHHHHHhc-CCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCC
Q 038343 6 SSLLLSEFILSFPE-IFSNKSCFEVGSGVGLVGICLAHV-KASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDP 83 (191)
Q Consensus 6 ~a~~L~~~l~~~~~-~~~~~~VLElG~GtG~~~~~la~~-g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~ 83 (191)
.+..|.+.+..... .....+|||+|||+|.+++.+++. +..+|+++|+++.+++.+++|++.|+.
T Consensus 69 ~Te~Lv~~~l~~~~~~~~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~~------------- 135 (251)
T TIGR03704 69 RTEFLVDEAAALARPRSGTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAGG------------- 135 (251)
T ss_pred cHHHHHHHHHHhhcccCCCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC-------------
Confidence 35566666544321 113458999999999999987764 334899999999999999999988752
Q ss_pred CeeEEEeecCCCCCcCCCCCCCCCEEEEcccccCCC--------------------------ChHHHHHHHHHHhccCCC
Q 038343 84 NVVQCVHLPWESASESGLSAFVPEIILGADILYDRS--------------------------CFPDLVRILAILLNRRKS 137 (191)
Q Consensus 84 ~~i~~~~ldw~~~~~~~~~~~~fDvIi~~d~ly~~~--------------------------~~~~ll~~l~~ll~~~g~ 137 (191)
++...|+.+...... .++||+|+++....... ....+++...++|+|+|.
T Consensus 136 ---~~~~~D~~~~l~~~~-~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~ 211 (251)
T TIGR03704 136 ---TVHEGDLYDALPTAL-RGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGH 211 (251)
T ss_pred ---EEEEeechhhcchhc-CCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCE
Confidence 345566544322111 24799999865432111 034677777889999974
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. |
| >TIGR00536 hemK_fam HemK family putative methylases | Back alignment and domain information |
|---|
Probab=99.31 E-value=8e-11 Score=93.93 Aligned_cols=98 Identities=19% Similarity=0.193 Sum_probs=74.5
Q ss_pred CcEEEeCCCccHHHHHHHhcCC-CeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCCCC
Q 038343 24 KSCFEVGSGVGLVGICLAHVKA-SKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESGLS 102 (191)
Q Consensus 24 ~~VLElG~GtG~~~~~la~~g~-~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~~~ 102 (191)
.+|||+|||+|.+++.++.... .+|+++|+++.+++.+++|+..++.. .++.+...||.+.. .
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~------------~~v~~~~~d~~~~~----~ 179 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLE------------HRVEFIQSNLFEPL----A 179 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCC------------CcEEEEECchhccC----c
Confidence 6899999999999998887643 48999999999999999999988754 34778888876532 2
Q ss_pred CCCCCEEEEcccccC--------------CC-----------ChHHHHHHHHHHhccCCC
Q 038343 103 AFVPEIILGADILYD--------------RS-----------CFPDLVRILAILLNRRKS 137 (191)
Q Consensus 103 ~~~fDvIi~~d~ly~--------------~~-----------~~~~ll~~l~~ll~~~g~ 137 (191)
..+||+|+++..... +. ....+++...++|+|+|.
T Consensus 180 ~~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~ 239 (284)
T TIGR00536 180 GQKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGF 239 (284)
T ss_pred CCCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCE
Confidence 237999998632211 10 245677888889999874
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. |
| >PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.5e-11 Score=102.11 Aligned_cols=105 Identities=19% Similarity=0.058 Sum_probs=76.8
Q ss_pred CCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCC
Q 038343 21 FSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESG 100 (191)
Q Consensus 21 ~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~ 100 (191)
.++++|||+|||+|.+++.++..|+.+|+++|.++.+++.+++|++.|++.. .++.+...|..+.....
T Consensus 219 ~~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~-----------~~v~~i~~D~~~~l~~~ 287 (396)
T PRK15128 219 VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDL-----------SKAEFVRDDVFKLLRTY 287 (396)
T ss_pred cCCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCC-----------CcEEEEEccHHHHHHHH
Confidence 3678999999999999998777777799999999999999999999998641 24666666654322110
Q ss_pred -CCCCCCCEEEEcccccCCC----------ChHHHHHHHHHHhccCCC
Q 038343 101 -LSAFVPEIILGADILYDRS----------CFPDLVRILAILLNRRKS 137 (191)
Q Consensus 101 -~~~~~fDvIi~~d~ly~~~----------~~~~ll~~l~~ll~~~g~ 137 (191)
....+||+|++. .-|... .+..++....++|+|+|.
T Consensus 288 ~~~~~~fDlVilD-PP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~ 334 (396)
T PRK15128 288 RDRGEKFDVIVMD-PPKFVENKSQLMGACRGYKDINMLAIQLLNPGGI 334 (396)
T ss_pred HhcCCCCCEEEEC-CCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeE
Confidence 123579999974 444333 245556667889999973
|
|
| >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.4e-10 Score=90.49 Aligned_cols=115 Identities=20% Similarity=0.215 Sum_probs=80.9
Q ss_pred ccHHHHHHHHhhCCCCCCCCcEEEeCCCccHHHHHHHhcC-CCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCC
Q 038343 5 PSSLLLSEFILSFPEIFSNKSCFEVGSGVGLVGICLAHVK-ASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDP 83 (191)
Q Consensus 5 ~~a~~L~~~l~~~~~~~~~~~VLElG~GtG~~~~~la~~g-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~ 83 (191)
+.+..+.+.+..... ..+.+|||+|||+|..++.+++.. ..+++++|+++.+++.+++|+..++..
T Consensus 71 ~~~~~l~~~~l~~~~-~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~------------ 137 (251)
T TIGR03534 71 PDTEELVEAALERLK-KGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLD------------ 137 (251)
T ss_pred CChHHHHHHHHHhcc-cCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCC------------
Confidence 344455555444322 234589999999999999888753 348999999999999999999887643
Q ss_pred CeeEEEeecCCCCCcCCCCCCCCCEEEEcccccCCCC--------------------------hHHHHHHHHHHhccCCC
Q 038343 84 NVVQCVHLPWESASESGLSAFVPEIILGADILYDRSC--------------------------FPDLVRILAILLNRRKS 137 (191)
Q Consensus 84 ~~i~~~~ldw~~~~~~~~~~~~fDvIi~~d~ly~~~~--------------------------~~~ll~~l~~ll~~~g~ 137 (191)
++.+...|+.+. +...+||+|+++.++..... ...+++.+.++|+|+|.
T Consensus 138 -~~~~~~~d~~~~----~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~ 212 (251)
T TIGR03534 138 -NVTFLQSDWFEP----LPGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGW 212 (251)
T ss_pred -eEEEEECchhcc----CcCCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCE
Confidence 467777776543 23468999998655432111 23567888889999974
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. |
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=7e-11 Score=93.57 Aligned_cols=116 Identities=17% Similarity=0.205 Sum_probs=81.8
Q ss_pred cHHHHHHHHhhCCCCCCCCcEEEeCCCccHHHHHHHhcC-CCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCC
Q 038343 6 SSLLLSEFILSFPEIFSNKSCFEVGSGVGLVGICLAHVK-ASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPN 84 (191)
Q Consensus 6 ~a~~L~~~l~~~~~~~~~~~VLElG~GtG~~~~~la~~g-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~ 84 (191)
.+..|.+.+.......++.+|||+|||+|..++.++... ..+|+++|+++.+++.+++|+. +... .
T Consensus 92 ~te~l~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~-~~~~------------~ 158 (275)
T PRK09328 92 ETEELVEWALEALLLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAK-HGLG------------A 158 (275)
T ss_pred CcHHHHHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH-hCCC------------C
Confidence 345566666544344467799999999999999887764 3489999999999999999987 2221 3
Q ss_pred eeEEEeecCCCCCcCCCCCCCCCEEEEcccccCCC--------------------------ChHHHHHHHHHHhccCCCC
Q 038343 85 VVQCVHLPWESASESGLSAFVPEIILGADILYDRS--------------------------CFPDLVRILAILLNRRKSV 138 (191)
Q Consensus 85 ~i~~~~ldw~~~~~~~~~~~~fDvIi~~d~ly~~~--------------------------~~~~ll~~l~~ll~~~g~~ 138 (191)
++.+...|+.+.. ..++||+|+++....... .+..+++.+.++|+|+|..
T Consensus 159 ~i~~~~~d~~~~~----~~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l 234 (275)
T PRK09328 159 RVEFLQGDWFEPL----PGGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWL 234 (275)
T ss_pred cEEEEEccccCcC----CCCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEE
Confidence 5777888775432 235899999864432111 1356777778999999753
|
|
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.8e-11 Score=100.15 Aligned_cols=102 Identities=9% Similarity=-0.002 Sum_probs=78.7
Q ss_pred hCCCCCCCCcEEEeCCCccHHHHHHHhc-CCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCC
Q 038343 16 SFPEIFSNKSCFEVGSGVGLVGICLAHV-KASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWE 94 (191)
Q Consensus 16 ~~~~~~~~~~VLElG~GtG~~~~~la~~-g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~ 94 (191)
+.....++.+|||+|||+|..++.+++. |+ +|+++|+++++++.+++++. +. .+.+...|+.
T Consensus 161 ~~l~l~~g~rVLDIGcG~G~~a~~la~~~g~-~V~giDlS~~~l~~A~~~~~--~l--------------~v~~~~~D~~ 223 (383)
T PRK11705 161 RKLQLKPGMRVLDIGCGWGGLARYAAEHYGV-SVVGVTISAEQQKLAQERCA--GL--------------PVEIRLQDYR 223 (383)
T ss_pred HHhCCCCCCEEEEeCCCccHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhc--cC--------------eEEEEECchh
Confidence 3334457889999999999999977764 55 89999999999999988763 21 2455555554
Q ss_pred CCCcCCCCCCCCCEEEEcccccCCC--ChHHHHHHHHHHhccCCCCcc
Q 038343 95 SASESGLSAFVPEIILGADILYDRS--CFPDLVRILAILLNRRKSVSS 140 (191)
Q Consensus 95 ~~~~~~~~~~~fDvIi~~d~ly~~~--~~~~ll~~l~~ll~~~g~~~~ 140 (191)
+. +++||.|++..++++.. ..+.+++.+.++|+|+|....
T Consensus 224 ~l------~~~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl 265 (383)
T PRK11705 224 DL------NGQFDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLL 265 (383)
T ss_pred hc------CCCCCEEEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEE
Confidence 32 25799999999988763 467899999999999987654
|
|
| >PRK05785 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.5e-11 Score=93.77 Aligned_cols=90 Identities=12% Similarity=0.068 Sum_probs=70.7
Q ss_pred CCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCCC
Q 038343 22 SNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESGL 101 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~~ 101 (191)
++.+|||+|||||..+..+++....+|+++|.+++|++.++++. . ....+..+. .+
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~~---~------------------~~~~d~~~l---p~ 106 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVAD---D------------------KVVGSFEAL---PF 106 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhcc---c------------------eEEechhhC---CC
Confidence 36699999999999988888763238999999999999886531 0 122333222 24
Q ss_pred CCCCCCEEEEcccccCCCChHHHHHHHHHHhccC
Q 038343 102 SAFVPEIILGADILYDRSCFPDLVRILAILLNRR 135 (191)
Q Consensus 102 ~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~ 135 (191)
++++||+|+++.++++..+.+.+++.+.++|||.
T Consensus 107 ~d~sfD~v~~~~~l~~~~d~~~~l~e~~RvLkp~ 140 (226)
T PRK05785 107 RDKSFDVVMSSFALHASDNIEKVIAEFTRVSRKQ 140 (226)
T ss_pred CCCCEEEEEecChhhccCCHHHHHHHHHHHhcCc
Confidence 5678999999999999999999999999999983
|
|
| >TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase | Back alignment and domain information |
|---|
Probab=99.29 E-value=4.2e-11 Score=91.06 Aligned_cols=93 Identities=11% Similarity=0.123 Sum_probs=66.8
Q ss_pred CCCcEEEeCCCccHHHHHHHhc-CCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCC
Q 038343 22 SNKSCFEVGSGVGLVGICLAHV-KASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESG 100 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~-g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~ 100 (191)
++.+|||+|||+|.....+++. +..+++++|+++.+++.++++.. .+.+...+..+ .
T Consensus 43 ~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~------------------~~~~~~~d~~~----~ 100 (204)
T TIGR03587 43 KIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLP------------------NINIIQGSLFD----P 100 (204)
T ss_pred CCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCC------------------CCcEEEeeccC----C
Confidence 5668999999999988877765 34589999999999999987531 12334444433 2
Q ss_pred CCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCC
Q 038343 101 LSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKS 137 (191)
Q Consensus 101 ~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~ 137 (191)
+.+++||+|++..++++.. .+.+.+.++++.+..++
T Consensus 101 ~~~~sfD~V~~~~vL~hl~-p~~~~~~l~el~r~~~~ 136 (204)
T TIGR03587 101 FKDNFFDLVLTKGVLIHIN-PDNLPTAYRELYRCSNR 136 (204)
T ss_pred CCCCCEEEEEECChhhhCC-HHHHHHHHHHHHhhcCc
Confidence 3456899999999998764 45555666666665543
|
Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme |
| >PRK07580 Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Probab=99.29 E-value=4.1e-11 Score=92.39 Aligned_cols=93 Identities=22% Similarity=0.169 Sum_probs=69.8
Q ss_pred CCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCC
Q 038343 21 FSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESG 100 (191)
Q Consensus 21 ~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~ 100 (191)
.++.+|||+|||+|..+..+++.+. +|+++|.++.+++.++++....+.. .++.+...|+..
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~~~-~v~~~D~s~~~i~~a~~~~~~~~~~------------~~i~~~~~d~~~----- 123 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARRGA-KVVASDISPQMVEEARERAPEAGLA------------GNITFEVGDLES----- 123 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCc------------cCcEEEEcCchh-----
Confidence 3567999999999999998888876 7999999999999999988766542 246666666432
Q ss_pred CCCCCCCEEEEcccccCCC--ChHHHHHHHHHHh
Q 038343 101 LSAFVPEIILGADILYDRS--CFPDLVRILAILL 132 (191)
Q Consensus 101 ~~~~~fDvIi~~d~ly~~~--~~~~ll~~l~~ll 132 (191)
..++||+|++.+++++.+ ....+++.+.+++
T Consensus 124 -~~~~fD~v~~~~~l~~~~~~~~~~~l~~l~~~~ 156 (230)
T PRK07580 124 -LLGRFDTVVCLDVLIHYPQEDAARMLAHLASLT 156 (230)
T ss_pred -ccCCcCEEEEcchhhcCCHHHHHHHHHHHHhhc
Confidence 235799999999986633 3445555555544
|
|
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.28 E-value=4.4e-11 Score=90.83 Aligned_cols=103 Identities=12% Similarity=-0.007 Sum_probs=75.9
Q ss_pred CCCcEEEeCCCccHHHHHHHhcC-CCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecC-CCCCcC
Q 038343 22 SNKSCFEVGSGVGLVGICLAHVK-ASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPW-ESASES 99 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~g-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw-~~~~~~ 99 (191)
++.+|||+|||+|..+..+++.. ..+|+++|+++.+++.+++++..++.. ++.+...|+ ... ..
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~-------------~v~~~~~d~~~~l-~~ 105 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLT-------------NLRLLCGDAVEVL-LD 105 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCC-------------CEEEEecCHHHHH-HH
Confidence 46689999999999988777653 348999999999999999999887642 467777776 322 11
Q ss_pred CCCCCCCCEEEEcccccCCC--------ChHHHHHHHHHHhccCCCC
Q 038343 100 GLSAFVPEIILGADILYDRS--------CFPDLVRILAILLNRRKSV 138 (191)
Q Consensus 100 ~~~~~~fDvIi~~d~ly~~~--------~~~~ll~~l~~ll~~~g~~ 138 (191)
.+.+++||+|++.-+..+.. ..+.+++.+.++|+|+|..
T Consensus 106 ~~~~~~~D~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l 152 (202)
T PRK00121 106 MFPDGSLDRIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEI 152 (202)
T ss_pred HcCccccceEEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEE
Confidence 13456799999853322111 2578999999999999743
|
|
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.28 E-value=6.7e-11 Score=90.66 Aligned_cols=108 Identities=15% Similarity=0.069 Sum_probs=77.8
Q ss_pred HHHHhhCCCCCCCCcEEEeCCCccHHHHHHHhcCC--CeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEE
Q 038343 11 SEFILSFPEIFSNKSCFEVGSGVGLVGICLAHVKA--SKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQC 88 (191)
Q Consensus 11 ~~~l~~~~~~~~~~~VLElG~GtG~~~~~la~~g~--~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~ 88 (191)
...+.+.....++.+|||+|||+|..+..+++... .+|+++|+++.+++.+++|++.++.. ++.+
T Consensus 66 ~~~~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~-------------~v~~ 132 (215)
T TIGR00080 66 VAMMTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLD-------------NVIV 132 (215)
T ss_pred HHHHHHHhCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCC-------------CeEE
Confidence 33444433445788999999999999998887643 26999999999999999999887753 4666
Q ss_pred EeecCCCCCcCCCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCcc
Q 038343 89 VHLPWESASESGLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVSS 140 (191)
Q Consensus 89 ~~ldw~~~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~~ 140 (191)
...|..+... ...+||+|++.... ..+.+.+.+.|+|+|....
T Consensus 133 ~~~d~~~~~~---~~~~fD~Ii~~~~~------~~~~~~~~~~L~~gG~lv~ 175 (215)
T TIGR00080 133 IVGDGTQGWE---PLAPYDRIYVTAAG------PKIPEALIDQLKEGGILVM 175 (215)
T ss_pred EECCcccCCc---ccCCCCEEEEcCCc------ccccHHHHHhcCcCcEEEE
Confidence 6666543321 22479999986443 3345678889999986554
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=9.6e-11 Score=94.33 Aligned_cols=100 Identities=15% Similarity=0.111 Sum_probs=75.7
Q ss_pred CcEEEeCCCccHHHHHHHhcC-CCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCCCC
Q 038343 24 KSCFEVGSGVGLVGICLAHVK-ASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESGLS 102 (191)
Q Consensus 24 ~~VLElG~GtG~~~~~la~~g-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~~~ 102 (191)
.+|||+|||+|.+++.+++.. ..+|+++|+++.+++.+++|++.++.. .++.+...|+.+.. +
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~------------~~i~~~~~D~~~~l----~ 198 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLE------------DRVTLIESDLFAAL----P 198 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCC------------CcEEEEECchhhhC----C
Confidence 589999999999999888763 348999999999999999999988754 35777887764432 2
Q ss_pred CCCCCEEEEccccc--------------CCC-----------ChHHHHHHHHHHhccCCCCc
Q 038343 103 AFVPEIILGADILY--------------DRS-----------CFPDLVRILAILLNRRKSVS 139 (191)
Q Consensus 103 ~~~fDvIi~~d~ly--------------~~~-----------~~~~ll~~l~~ll~~~g~~~ 139 (191)
..+||+|+++.... .+. ....+++...++|+|||...
T Consensus 199 ~~~fDlIvsNPPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~ 260 (307)
T PRK11805 199 GRRYDLIVSNPPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLV 260 (307)
T ss_pred CCCccEEEECCCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEE
Confidence 34799999864321 111 13567888889999998544
|
|
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.1e-10 Score=89.21 Aligned_cols=110 Identities=13% Similarity=0.077 Sum_probs=78.0
Q ss_pred HHHHHHhhCCCCCCCCcEEEeCCCccHHHHHHHhc-CC-CeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCee
Q 038343 9 LLSEFILSFPEIFSNKSCFEVGSGVGLVGICLAHV-KA-SKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVV 86 (191)
Q Consensus 9 ~L~~~l~~~~~~~~~~~VLElG~GtG~~~~~la~~-g~-~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i 86 (191)
.+..++.+.....++.+|||+|||+|..+..+++. +. .+|+++|+++++++.+++|++.++.. ++
T Consensus 63 ~~~~~~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~-------------~v 129 (212)
T PRK13942 63 HMVAIMCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYD-------------NV 129 (212)
T ss_pred HHHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-------------Ce
Confidence 34444444444557889999999999999877765 32 48999999999999999999877643 46
Q ss_pred EEEeecCCCCCcCCCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCcc
Q 038343 87 QCVHLPWESASESGLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVSS 140 (191)
Q Consensus 87 ~~~~ldw~~~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~~ 140 (191)
.+...|-.... ....+||+|++...+ ..+.+.+.+.|+|||....
T Consensus 130 ~~~~gd~~~~~---~~~~~fD~I~~~~~~------~~~~~~l~~~LkpgG~lvi 174 (212)
T PRK13942 130 EVIVGDGTLGY---EENAPYDRIYVTAAG------PDIPKPLIEQLKDGGIMVI 174 (212)
T ss_pred EEEECCcccCC---CcCCCcCEEEECCCc------ccchHHHHHhhCCCcEEEE
Confidence 66666643221 123579999986443 2334567788999987443
|
|
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.4e-10 Score=87.70 Aligned_cols=105 Identities=12% Similarity=0.087 Sum_probs=77.9
Q ss_pred CCCCCCCcEEEeCCCccHHHHHHHhc-C-CCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCC
Q 038343 18 PEIFSNKSCFEVGSGVGLVGICLAHV-K-ASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWES 95 (191)
Q Consensus 18 ~~~~~~~~VLElG~GtG~~~~~la~~-g-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~ 95 (191)
....++.+|||+|||+|.+++.+++. + ..+|+++|.++.+++.+++|++.+++. .++.+...|..+
T Consensus 36 l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~------------~~v~~~~~d~~~ 103 (198)
T PRK00377 36 LRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVL------------NNIVLIKGEAPE 103 (198)
T ss_pred cCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCC------------CCeEEEEechhh
Confidence 34457889999999999999987764 3 248999999999999999999988743 245566655543
Q ss_pred CCcCCCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCc
Q 038343 96 ASESGLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVS 139 (191)
Q Consensus 96 ~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~ 139 (191)
.... ...+||.|++.- .......+++.+.++|+|+|...
T Consensus 104 ~l~~--~~~~~D~V~~~~---~~~~~~~~l~~~~~~LkpgG~lv 142 (198)
T PRK00377 104 ILFT--INEKFDRIFIGG---GSEKLKEIISASWEIIKKGGRIV 142 (198)
T ss_pred hHhh--cCCCCCEEEECC---CcccHHHHHHHHHHHcCCCcEEE
Confidence 2111 124799999842 33467889999999999998544
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.8e-10 Score=98.52 Aligned_cols=101 Identities=17% Similarity=0.188 Sum_probs=73.8
Q ss_pred CCcEEEeCCCccHHHHHHHhc-CCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCCC
Q 038343 23 NKSCFEVGSGVGLVGICLAHV-KASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESGL 101 (191)
Q Consensus 23 ~~~VLElG~GtG~~~~~la~~-g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~~ 101 (191)
+.+|||+|||+|.+++.+++. ...+|+++|+|+.+++.+++|+..++.. .++.+...||.+..
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~------------~~v~~~~~D~~~~~---- 202 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVT------------DRIQIIHSNWFENI---- 202 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCc------------cceeeeecchhhhC----
Confidence 458999999999999977653 3458999999999999999999888754 35677777764322
Q ss_pred CCCCCCEEEEcccccCCC--------------------------ChHHHHHHHHHHhccCCCCc
Q 038343 102 SAFVPEIILGADILYDRS--------------------------CFPDLVRILAILLNRRKSVS 139 (191)
Q Consensus 102 ~~~~fDvIi~~d~ly~~~--------------------------~~~~ll~~l~~ll~~~g~~~ 139 (191)
...+||+|+++....... .+..+++.+.++|+|+|...
T Consensus 203 ~~~~fDlIvsNPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~ 266 (506)
T PRK01544 203 EKQKFDFIVSNPPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKII 266 (506)
T ss_pred cCCCccEEEECCCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEE
Confidence 235799999854322111 13446777888999998543
|
|
| >TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.2e-10 Score=96.22 Aligned_cols=91 Identities=15% Similarity=0.147 Sum_probs=66.7
Q ss_pred CCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCCC
Q 038343 22 SNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESGL 101 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~~ 101 (191)
++.+|||||||+|.+++.++..+ .+|+++|+++.+++.+++|++.|+.. ++.+...|..+....
T Consensus 233 ~~~~vLDL~cG~G~~~l~la~~~-~~v~~vE~~~~av~~a~~N~~~~~~~-------------~~~~~~~d~~~~~~~-- 296 (374)
T TIGR02085 233 PVTQMWDLFCGVGGFGLHCAGPD-TQLTGIEIESEAIACAQQSAQMLGLD-------------NLSFAALDSAKFATA-- 296 (374)
T ss_pred CCCEEEEccCCccHHHHHHhhcC-CeEEEEECCHHHHHHHHHHHHHcCCC-------------cEEEEECCHHHHHHh--
Confidence 56789999999999999988876 48999999999999999999998753 466677665432211
Q ss_pred CCCCCCEEEEcccccCCCChHHHHHHHHH
Q 038343 102 SAFVPEIILGADILYDRSCFPDLVRILAI 130 (191)
Q Consensus 102 ~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ 130 (191)
...+||+|+. |.-|. .....+++.+.+
T Consensus 297 ~~~~~D~vi~-DPPr~-G~~~~~l~~l~~ 323 (374)
T TIGR02085 297 QMSAPELVLV-NPPRR-GIGKELCDYLSQ 323 (374)
T ss_pred cCCCCCEEEE-CCCCC-CCcHHHHHHHHh
Confidence 1135999887 44453 344555555543
|
This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA. |
| >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.7e-10 Score=88.33 Aligned_cols=101 Identities=17% Similarity=0.093 Sum_probs=80.1
Q ss_pred CCCcEEEeCCCccHHHHHHHhcCC--CeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcC
Q 038343 22 SNKSCFEVGSGVGLVGICLAHVKA--SKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASES 99 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~g~--~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~ 99 (191)
++.+|||+|||+|..+..+++.+. .+++++|+++.+++.++++.. . . .++.+...+..+..
T Consensus 39 ~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~-~--~------------~~i~~~~~d~~~~~-- 101 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE-L--P------------LNIEFIQADAEALP-- 101 (223)
T ss_pred CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc-c--C------------CCceEEecchhcCC--
Confidence 678999999999998887777655 389999999999999988765 1 1 23555666654432
Q ss_pred CCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCcc
Q 038343 100 GLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVSS 140 (191)
Q Consensus 100 ~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~~ 140 (191)
...++||+|+++..+++..+...+++.+.++|+|+|....
T Consensus 102 -~~~~~~D~i~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~ 141 (223)
T TIGR01934 102 -FEDNSFDAVTIAFGLRNVTDIQKALREMYRVLKPGGRLVI 141 (223)
T ss_pred -CCCCcEEEEEEeeeeCCcccHHHHHHHHHHHcCCCcEEEE
Confidence 2345799999999999999999999999999999986553
|
Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. |
| >COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.24 E-value=8.1e-11 Score=98.42 Aligned_cols=129 Identities=19% Similarity=0.198 Sum_probs=92.9
Q ss_pred HHHHHHHHhhCCCCCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCee
Q 038343 7 SLLLSEFILSFPEIFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVV 86 (191)
Q Consensus 7 a~~L~~~l~~~~~~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i 86 (191)
+..|.+++.......++.++||+.||.|.+++.+|+.. .+|+++|+++++++.+++|++.|++. ++
T Consensus 278 ~ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~~-~~V~gvEi~~~aV~~A~~NA~~n~i~-------------N~ 343 (432)
T COG2265 278 AEKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKRV-KKVHGVEISPEAVEAAQENAAANGID-------------NV 343 (432)
T ss_pred HHHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhcccC-CEEEEEecCHHHHHHHHHHHHHcCCC-------------cE
Confidence 45566666665555567799999999999999999774 49999999999999999999999976 37
Q ss_pred EEEeecCCCCCcCCCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCccccccCCCCcccccccCCCCccccccc
Q 038343 87 QCVHLPWESASESGLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVSSSRKESSKGFTLDTKCNTNDLNDLTAV 166 (191)
Q Consensus 87 ~~~~ldw~~~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (191)
.+...+-++..........+|+|+. +++....--..++.+.+-+
T Consensus 344 ~f~~~~ae~~~~~~~~~~~~d~Vvv-----DPPR~G~~~~~lk~l~~~~------------------------------- 387 (432)
T COG2265 344 EFIAGDAEEFTPAWWEGYKPDVVVV-----DPPRAGADREVLKQLAKLK------------------------------- 387 (432)
T ss_pred EEEeCCHHHHhhhccccCCCCEEEE-----CCCCCCCCHHHHHHHHhcC-------------------------------
Confidence 7777776555433323347899887 4443222223444444444
Q ss_pred cCCCCEEEEEecccCHHHHHHhhc
Q 038343 167 TSKGPVAYIATVIRNIDTFNYFLS 190 (191)
Q Consensus 167 ~~~~~~~~va~~~r~~~~~~~f~~ 190 (191)
+..++||+| ||.|+...+.
T Consensus 388 --p~~IvYVSC---NP~TlaRDl~ 406 (432)
T COG2265 388 --PKRIVYVSC---NPATLARDLA 406 (432)
T ss_pred --CCcEEEEeC---CHHHHHHHHH
Confidence 234699999 9999887653
|
|
| >PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.24 E-value=9.2e-11 Score=94.88 Aligned_cols=75 Identities=20% Similarity=0.188 Sum_probs=59.7
Q ss_pred CCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCCC
Q 038343 22 SNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESGL 101 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~~ 101 (191)
++.+|||+|||+|..++.+++.+. +|+++|.++.+++.+++|++.|++. ++++...|..+....
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~~~~-~V~gvD~s~~av~~A~~n~~~~~l~-------------~v~~~~~D~~~~~~~-- 236 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCATPGM-QLTGIEISAEAIACAKQSAAELGLT-------------NVQFQALDSTQFATA-- 236 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHHcCCC-------------ceEEEEcCHHHHHHh--
Confidence 567999999999999999999874 9999999999999999999998853 466777665433211
Q ss_pred CCCCCCEEEEc
Q 038343 102 SAFVPEIILGA 112 (191)
Q Consensus 102 ~~~~fDvIi~~ 112 (191)
...+||+|+..
T Consensus 237 ~~~~~D~Vv~d 247 (315)
T PRK03522 237 QGEVPDLVLVN 247 (315)
T ss_pred cCCCCeEEEEC
Confidence 12469999985
|
|
| >KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription] | Back alignment and domain information |
|---|
Probab=99.24 E-value=6e-11 Score=94.30 Aligned_cols=106 Identities=17% Similarity=0.217 Sum_probs=86.5
Q ss_pred hCCCCCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCC
Q 038343 16 SFPEIFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWES 95 (191)
Q Consensus 16 ~~~~~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~ 95 (191)
.+...+.++.|||+|||+|+++.++++.|+++|++++.+ +|-+.+++-++.|.+. .+|.++....++
T Consensus 171 ~N~sDF~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS-~MAqyA~~Lv~~N~~~------------~rItVI~GKiEd 237 (517)
T KOG1500|consen 171 ENHSDFQDKIVLDVGAGSGILSFFAAQAGAKKVYAVEAS-EMAQYARKLVASNNLA------------DRITVIPGKIED 237 (517)
T ss_pred hcccccCCcEEEEecCCccHHHHHHHHhCcceEEEEehh-HHHHHHHHHHhcCCcc------------ceEEEccCcccc
Confidence 456678999999999999999999999999999999985 7889999999988765 678888887766
Q ss_pred CCcCCCCCCCCCEEEEc---ccccCCCChHHHHHHHHHHhccCCCCc
Q 038343 96 ASESGLSAFVPEIILGA---DILYDRSCFPDLVRILAILLNRRKSVS 139 (191)
Q Consensus 96 ~~~~~~~~~~fDvIi~~---d~ly~~~~~~~ll~~l~~ll~~~g~~~ 139 (191)
.. + +.+.|+||+- -++++..+++.-+..- ++|+|+|+.-
T Consensus 238 ie---L-PEk~DviISEPMG~mL~NERMLEsYl~Ar-k~l~P~GkMf 279 (517)
T KOG1500|consen 238 IE---L-PEKVDVIISEPMGYMLVNERMLESYLHAR-KWLKPNGKMF 279 (517)
T ss_pred cc---C-chhccEEEeccchhhhhhHHHHHHHHHHH-hhcCCCCccc
Confidence 54 2 2579999973 4566777777777655 8999998754
|
|
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.6e-10 Score=87.16 Aligned_cols=109 Identities=17% Similarity=0.125 Sum_probs=78.3
Q ss_pred HHHHHHhhCCCCCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEE
Q 038343 9 LLSEFILSFPEIFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQC 88 (191)
Q Consensus 9 ~L~~~l~~~~~~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~ 88 (191)
.+..++.......++.+|||+|||+|..+..+++.+. +|+++|.++.+++.++++++.++.. ++.+
T Consensus 65 ~~~~~l~~~l~~~~~~~VLeiG~GsG~~t~~la~~~~-~v~~vd~~~~~~~~a~~~~~~~~~~-------------~v~~ 130 (212)
T PRK00312 65 YMVARMTELLELKPGDRVLEIGTGSGYQAAVLAHLVR-RVFSVERIKTLQWEAKRRLKQLGLH-------------NVSV 130 (212)
T ss_pred HHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHHhC-EEEEEeCCHHHHHHHHHHHHHCCCC-------------ceEE
Confidence 3344444444445778999999999998888888754 8999999999999999999887643 3566
Q ss_pred EeecCCCCCcCCCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCcc
Q 038343 89 VHLPWESASESGLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVSS 140 (191)
Q Consensus 89 ~~ldw~~~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~~ 140 (191)
...|..+.. ...++||+|++...+ ..+.+.+.+.|+|+|....
T Consensus 131 ~~~d~~~~~---~~~~~fD~I~~~~~~------~~~~~~l~~~L~~gG~lv~ 173 (212)
T PRK00312 131 RHGDGWKGW---PAYAPFDRILVTAAA------PEIPRALLEQLKEGGILVA 173 (212)
T ss_pred EECCcccCC---CcCCCcCEEEEccCc------hhhhHHHHHhcCCCcEEEE
Confidence 666643321 123579999986543 3345678899999986544
|
|
| >PRK06202 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.5e-10 Score=88.38 Aligned_cols=93 Identities=19% Similarity=0.097 Sum_probs=66.2
Q ss_pred CCCcEEEeCCCccHHHHHHHh----cCC-CeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCC
Q 038343 22 SNKSCFEVGSGVGLVGICLAH----VKA-SKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESA 96 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~----~g~-~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~ 96 (191)
++.+|||+|||+|..+..+++ .|. .+|+++|+++.+++.++++...++ +.+...+-+..
T Consensus 60 ~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~----------------~~~~~~~~~~l 123 (232)
T PRK06202 60 RPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPG----------------VTFRQAVSDEL 123 (232)
T ss_pred CCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCC----------------CeEEEEecccc
Confidence 556999999999988877664 232 389999999999999987654333 22222222211
Q ss_pred CcCCCCCCCCCEEEEcccccCCCCh--HHHHHHHHHHhc
Q 038343 97 SESGLSAFVPEIILGADILYDRSCF--PDLVRILAILLN 133 (191)
Q Consensus 97 ~~~~~~~~~fDvIi~~d~ly~~~~~--~~ll~~l~~ll~ 133 (191)
. ..+++||+|+++.++++..+. ..+++.+.++++
T Consensus 124 ~---~~~~~fD~V~~~~~lhh~~d~~~~~~l~~~~r~~~ 159 (232)
T PRK06202 124 V---AEGERFDVVTSNHFLHHLDDAEVVRLLADSAALAR 159 (232)
T ss_pred c---ccCCCccEEEECCeeecCChHHHHHHHHHHHHhcC
Confidence 1 134689999999999988763 467888888876
|
|
| >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.6e-10 Score=91.88 Aligned_cols=109 Identities=12% Similarity=0.095 Sum_probs=83.0
Q ss_pred HhhCCCCCCCCcEEEeCCCccHHHHHHHhcCC-CeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeec
Q 038343 14 ILSFPEIFSNKSCFEVGSGVGLVGICLAHVKA-SKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLP 92 (191)
Q Consensus 14 l~~~~~~~~~~~VLElG~GtG~~~~~la~~g~-~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ld 92 (191)
+.+.....++.+|||+|||+|..++.+++..+ .+++++|. +.+++.+++|+...+.. .++++...|
T Consensus 141 l~~~~~~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~------------~rv~~~~~d 207 (306)
T TIGR02716 141 LLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVA------------DRMRGIAVD 207 (306)
T ss_pred HHHHcCCCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCcc------------ceEEEEecC
Confidence 33333334567999999999999998777643 38999998 78999999999887754 467888887
Q ss_pred CCCCCcCCCCCCCCCEEEEcccccCCCC--hHHHHHHHHHHhccCCCCcc
Q 038343 93 WESASESGLSAFVPEIILGADILYDRSC--FPDLVRILAILLNRRKSVSS 140 (191)
Q Consensus 93 w~~~~~~~~~~~~fDvIi~~d~ly~~~~--~~~ll~~l~~ll~~~g~~~~ 140 (191)
..+.. + ..+|+|+.+.++|+... ...+++.+.+.|+|||+..+
T Consensus 208 ~~~~~---~--~~~D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i 252 (306)
T TIGR02716 208 IYKES---Y--PEADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLI 252 (306)
T ss_pred ccCCC---C--CCCCEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEE
Confidence 65321 2 24799999999986543 45799999999999987654
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d. |
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=3.5e-10 Score=87.22 Aligned_cols=104 Identities=7% Similarity=-0.006 Sum_probs=69.9
Q ss_pred CCCCCCcEEEeCCCccHHHHHHHhc-CCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCC
Q 038343 19 EIFSNKSCFEVGSGVGLVGICLAHV-KASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESAS 97 (191)
Q Consensus 19 ~~~~~~~VLElG~GtG~~~~~la~~-g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~ 97 (191)
...++.+|||+|||+|..++.+++. +..+|+++|.++.|++.+.++++.. .++.+...|.....
T Consensus 69 ~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~---------------~nv~~i~~D~~~~~ 133 (226)
T PRK04266 69 PIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEER---------------KNIIPILADARKPE 133 (226)
T ss_pred CCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhc---------------CCcEEEECCCCCcc
Confidence 3457889999999999999988875 3348999999999999887776532 12444444443221
Q ss_pred c-CCCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCcc
Q 038343 98 E-SGLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVSS 140 (191)
Q Consensus 98 ~-~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~~ 140 (191)
. ..+. .+||+|+.. + .++.....+++.+.++|||||...+
T Consensus 134 ~~~~l~-~~~D~i~~d-~-~~p~~~~~~L~~~~r~LKpGG~lvI 174 (226)
T PRK04266 134 RYAHVV-EKVDVIYQD-V-AQPNQAEIAIDNAEFFLKDGGYLLL 174 (226)
T ss_pred hhhhcc-ccCCEEEEC-C-CChhHHHHHHHHHHHhcCCCcEEEE
Confidence 0 1112 359999852 1 1222234568999999999987655
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=9.6e-11 Score=103.89 Aligned_cols=104 Identities=15% Similarity=0.059 Sum_probs=78.8
Q ss_pred CCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCCC
Q 038343 22 SNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESGL 101 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~~ 101 (191)
++++|||||||||.+++.+++.|+++|+++|+++.+++.+++|++.|++.. .++++...|..+.... .
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~~-----------~~v~~i~~D~~~~l~~-~ 605 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLSG-----------RQHRLIQADCLAWLKE-A 605 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCc-----------cceEEEEccHHHHHHH-c
Confidence 578999999999999999999888789999999999999999999998641 2466666664332111 1
Q ss_pred CCCCCCEEEEcccccCC-----------CChHHHHHHHHHHhccCCCC
Q 038343 102 SAFVPEIILGADILYDR-----------SCFPDLVRILAILLNRRKSV 138 (191)
Q Consensus 102 ~~~~fDvIi~~d~ly~~-----------~~~~~ll~~l~~ll~~~g~~ 138 (191)
..+||+|++...-+.. .++..++..+.++|+|+|..
T Consensus 606 -~~~fDlIilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l 652 (702)
T PRK11783 606 -REQFDLIFIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTL 652 (702)
T ss_pred -CCCcCEEEECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEE
Confidence 3579999984333211 23567888889999999743
|
|
| >PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.1e-11 Score=91.07 Aligned_cols=103 Identities=18% Similarity=0.212 Sum_probs=72.6
Q ss_pred CCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCC
Q 038343 21 FSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESG 100 (191)
Q Consensus 21 ~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~ 100 (191)
.++.++|||.||||.+|+.+.+.|+++|+++|.++.++..+++|++.-+.. .++.+...|........
T Consensus 41 ~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~------------~~~~v~~~d~~~~l~~~ 108 (183)
T PF03602_consen 41 LEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLE------------DKIRVIKGDAFKFLLKL 108 (183)
T ss_dssp HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-G------------GGEEEEESSHHHHHHHH
T ss_pred cCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCC------------cceeeeccCHHHHHHhh
Confidence 688999999999999999999999999999999999999999999887755 23555555432211110
Q ss_pred -CCCCCCCEEEEcccccCCCCh-HHHHHHHH--HHhccCC
Q 038343 101 -LSAFVPEIILGADILYDRSCF-PDLVRILA--ILLNRRK 136 (191)
Q Consensus 101 -~~~~~fDvIi~~d~ly~~~~~-~~ll~~l~--~ll~~~g 136 (191)
....+||+|++ |.-|..... ..+++.+. .+|+++|
T Consensus 109 ~~~~~~fDiIfl-DPPY~~~~~~~~~l~~l~~~~~l~~~~ 147 (183)
T PF03602_consen 109 AKKGEKFDIIFL-DPPYAKGLYYEELLELLAENNLLNEDG 147 (183)
T ss_dssp HHCTS-EEEEEE---STTSCHHHHHHHHHHHHTTSEEEEE
T ss_pred cccCCCceEEEE-CCCcccchHHHHHHHHHHHCCCCCCCE
Confidence 13468999987 888888874 88888887 5777664
|
They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A. |
| >PRK06922 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.2e-10 Score=100.55 Aligned_cols=105 Identities=10% Similarity=0.057 Sum_probs=76.8
Q ss_pred CCCCcEEEeCCCccHHHHHHHhc-CCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcC
Q 038343 21 FSNKSCFEVGSGVGLVGICLAHV-KASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASES 99 (191)
Q Consensus 21 ~~~~~VLElG~GtG~~~~~la~~-g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~ 99 (191)
.++.+|||+|||+|..+..+++. ...+|+++|+++.|++.++++...++. ++.+...|..+. ..
T Consensus 417 ~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g~--------------~ie~I~gDa~dL-p~ 481 (677)
T PRK06922 417 IKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEGR--------------SWNVIKGDAINL-SS 481 (677)
T ss_pred cCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCC--------------CeEEEEcchHhC-cc
Confidence 46789999999999888766653 334999999999999999987655432 344455554332 11
Q ss_pred CCCCCCCCEEEEcccccCC-------------CChHHHHHHHHHHhccCCCCcc
Q 038343 100 GLSAFVPEIILGADILYDR-------------SCFPDLVRILAILLNRRKSVSS 140 (191)
Q Consensus 100 ~~~~~~fDvIi~~d~ly~~-------------~~~~~ll~~l~~ll~~~g~~~~ 140 (191)
.+++++||+|+++.++++. .....+++.+.++|||||....
T Consensus 482 ~fedeSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII 535 (677)
T PRK06922 482 SFEKESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIII 535 (677)
T ss_pred ccCCCCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEE
Confidence 2345689999998777632 3567889999999999987654
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.6e-10 Score=98.33 Aligned_cols=101 Identities=20% Similarity=0.159 Sum_probs=76.7
Q ss_pred CCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCC
Q 038343 21 FSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESG 100 (191)
Q Consensus 21 ~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~ 100 (191)
.++.+|||+|||+|..+..+++.+. +|+++|+++.+++.++. .++.. .++.+...|..... ..
T Consensus 36 ~~~~~vLDlGcG~G~~~~~la~~~~-~v~giD~s~~~l~~a~~---~~~~~------------~~i~~~~~d~~~~~-~~ 98 (475)
T PLN02336 36 YEGKSVLELGAGIGRFTGELAKKAG-QVIALDFIESVIKKNES---INGHY------------KNVKFMCADVTSPD-LN 98 (475)
T ss_pred cCCCEEEEeCCCcCHHHHHHHhhCC-EEEEEeCCHHHHHHHHH---HhccC------------CceEEEEecccccc-cC
Confidence 3567999999999999998888754 89999999999976543 22211 24666777664321 12
Q ss_pred CCCCCCCEEEEcccccCCCC--hHHHHHHHHHHhccCCCC
Q 038343 101 LSAFVPEIILGADILYDRSC--FPDLVRILAILLNRRKSV 138 (191)
Q Consensus 101 ~~~~~fDvIi~~d~ly~~~~--~~~ll~~l~~ll~~~g~~ 138 (191)
+++++||+|++..++++..+ ...+++.+.++|+|+|..
T Consensus 99 ~~~~~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l 138 (475)
T PLN02336 99 ISDGSVDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYI 138 (475)
T ss_pred CCCCCEEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEE
Confidence 34568999999999998765 678999999999999864
|
|
| >TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA | Back alignment and domain information |
|---|
Probab=99.18 E-value=3e-10 Score=95.61 Aligned_cols=111 Identities=19% Similarity=0.214 Sum_probs=75.2
Q ss_pred HHHHHHHhhCCCCCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeE
Q 038343 8 LLLSEFILSFPEIFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQ 87 (191)
Q Consensus 8 ~~L~~~l~~~~~~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~ 87 (191)
..|.+.+.......++.+|||+|||+|..++.+++.+ .+|+++|+++.+++.+++|++.|++. ++.
T Consensus 278 ~~l~~~~~~~l~~~~~~~vLDl~cG~G~~sl~la~~~-~~V~~vE~~~~av~~a~~n~~~~~~~-------------nv~ 343 (431)
T TIGR00479 278 EKLVDRALEALELQGEELVVDAYCGVGTFTLPLAKQA-KSVVGIEVVPESVEKAQQNAELNGIA-------------NVE 343 (431)
T ss_pred HHHHHHHHHHhccCCCCEEEEcCCCcCHHHHHHHHhC-CEEEEEEcCHHHHHHHHHHHHHhCCC-------------ceE
Confidence 3444444443333456799999999999999998875 48999999999999999999998853 467
Q ss_pred EEeecCCCCCcC-CCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccC
Q 038343 88 CVHLPWESASES-GLSAFVPEIILGADILYDRSCFPDLVRILAILLNRR 135 (191)
Q Consensus 88 ~~~ldw~~~~~~-~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~ 135 (191)
+...|+.+.... ...+.+||+|+. |.-+. .....+++.+.+ ++|+
T Consensus 344 ~~~~d~~~~l~~~~~~~~~~D~vi~-dPPr~-G~~~~~l~~l~~-l~~~ 389 (431)
T TIGR00479 344 FLAGTLETVLPKQPWAGQIPDVLLL-DPPRK-GCAAEVLRTIIE-LKPE 389 (431)
T ss_pred EEeCCHHHHHHHHHhcCCCCCEEEE-CcCCC-CCCHHHHHHHHh-cCCC
Confidence 777776442111 122346999987 33232 234566666554 4443
|
This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. |
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.7e-10 Score=75.61 Aligned_cols=97 Identities=16% Similarity=0.138 Sum_probs=74.9
Q ss_pred cEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCCCCCC
Q 038343 25 SCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESGLSAF 104 (191)
Q Consensus 25 ~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~~~~~ 104 (191)
+|+|+|||+|..+..+++....+++++|.++..++.++++...+.. ..+.+...++.+... ....
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~--~~~~ 65 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLA-------------DNVEVLKGDAEELPP--EADE 65 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcccc-------------cceEEEEcChhhhcc--ccCC
Confidence 5899999999988877774456999999999999888764333221 246666666655432 1335
Q ss_pred CCCEEEEcccccC-CCChHHHHHHHHHHhccCC
Q 038343 105 VPEIILGADILYD-RSCFPDLVRILAILLNRRK 136 (191)
Q Consensus 105 ~fDvIi~~d~ly~-~~~~~~ll~~l~~ll~~~g 136 (191)
+||+|++..++++ ......+++.+.++++++|
T Consensus 66 ~~d~i~~~~~~~~~~~~~~~~l~~~~~~l~~~g 98 (107)
T cd02440 66 SFDVIISDPPLHHLVEDLARFLEEARRLLKPGG 98 (107)
T ss_pred ceEEEEEccceeehhhHHHHHHHHHHHHcCCCC
Confidence 7999999999988 8899999999999999986
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). |
| >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.5e-10 Score=86.20 Aligned_cols=105 Identities=10% Similarity=0.005 Sum_probs=75.4
Q ss_pred CCCcEEEeCCCccHHHHHHHhcC-CCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCC
Q 038343 22 SNKSCFEVGSGVGLVGICLAHVK-ASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESG 100 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~g-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~ 100 (191)
...+|||||||+|..+..+++.. ..+|+++|+++.+++.+++++..+++. ++.+...|..+.....
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~-------------ni~~i~~d~~~~~~~~ 82 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLK-------------NLHVLCGDANELLDKF 82 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCC-------------CEEEEccCHHHHHHhh
Confidence 34589999999999998777753 348999999999999999998877643 4677777764332222
Q ss_pred CCCCCCCEEEEcc--cccCCC------ChHHHHHHHHHHhccCCCCc
Q 038343 101 LSAFVPEIILGAD--ILYDRS------CFPDLVRILAILLNRRKSVS 139 (191)
Q Consensus 101 ~~~~~fDvIi~~d--~ly~~~------~~~~ll~~l~~ll~~~g~~~ 139 (191)
+.++.+|.|+..- ..+... ..+.+++.+.++|+|||...
T Consensus 83 ~~~~~~d~v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~ 129 (194)
T TIGR00091 83 FPDGSLSKVFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIH 129 (194)
T ss_pred CCCCceeEEEEECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEE
Confidence 3345799998752 222111 12679999999999998543
|
In E. coli, this protein flanks the DNA repair protein MutY, also called micA. |
| >KOG3010 consensus Methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.17 E-value=4.2e-11 Score=91.11 Aligned_cols=96 Identities=15% Similarity=0.097 Sum_probs=69.6
Q ss_pred cEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCCCC--
Q 038343 25 SCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESGLS-- 102 (191)
Q Consensus 25 ~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~~~-- 102 (191)
.++|+|||+|..++.++.. .++|++||.++.||+.+++.-...-.. ....+.+.+...+.
T Consensus 36 ~a~DvG~G~Gqa~~~iae~-~k~VIatD~s~~mL~~a~k~~~~~y~~-----------------t~~~ms~~~~v~L~g~ 97 (261)
T KOG3010|consen 36 LAWDVGTGNGQAARGIAEH-YKEVIATDVSEAMLKVAKKHPPVTYCH-----------------TPSTMSSDEMVDLLGG 97 (261)
T ss_pred eEEEeccCCCcchHHHHHh-hhhheeecCCHHHHHHhhcCCCccccc-----------------CCccccccccccccCC
Confidence 7999999999888888877 569999999999999776532211111 11111111111122
Q ss_pred CCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCc
Q 038343 103 AFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVS 139 (191)
Q Consensus 103 ~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~ 139 (191)
+++.|+|+++.++|+.+ .+.+.+.+.++||+.|+..
T Consensus 98 e~SVDlI~~Aqa~HWFd-le~fy~~~~rvLRk~Gg~i 133 (261)
T KOG3010|consen 98 EESVDLITAAQAVHWFD-LERFYKEAYRVLRKDGGLI 133 (261)
T ss_pred CcceeeehhhhhHHhhc-hHHHHHHHHHHcCCCCCEE
Confidence 46899999999999884 8899999999999998644
|
|
| >KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.16 E-value=4e-10 Score=86.52 Aligned_cols=128 Identities=17% Similarity=0.079 Sum_probs=95.8
Q ss_pred CCCCcEEEeCCCccHHHHHH-HhcCC------CeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecC
Q 038343 21 FSNKSCFEVGSGVGLVGICL-AHVKA------SKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPW 93 (191)
Q Consensus 21 ~~~~~VLElG~GtG~~~~~l-a~~g~------~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw 93 (191)
..+.++||++||||-++.-+ -..+. ++|+..|+||+||...++..+..++... ..+.+...|-
T Consensus 99 ~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~----------~~~~w~~~dA 168 (296)
T KOG1540|consen 99 GKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKAS----------SRVEWVEGDA 168 (296)
T ss_pred CCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcC----------CceEEEeCCc
Confidence 36789999999999777743 33333 6999999999999999888766544311 2355555554
Q ss_pred CCCCcCCCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCccccccCCCCcccccccCCCCcc
Q 038343 94 ESASESGLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVSSSRKESSKGFTLDTKCNTNDLN 161 (191)
Q Consensus 94 ~~~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (191)
++. .+++.+||....+--|-+..+++..++...++|||||...++-++-.....+..|.....++
T Consensus 169 E~L---pFdd~s~D~yTiafGIRN~th~~k~l~EAYRVLKpGGrf~cLeFskv~~~~l~~fy~~ysf~ 233 (296)
T KOG1540|consen 169 EDL---PFDDDSFDAYTIAFGIRNVTHIQKALREAYRVLKPGGRFSCLEFSKVENEPLKWFYDQYSFD 233 (296)
T ss_pred ccC---CCCCCcceeEEEecceecCCCHHHHHHHHHHhcCCCcEEEEEEccccccHHHHHHHHhhhhh
Confidence 433 26778999999988899999999999999999999998887777666555666666555433
|
|
| >TIGR01177 conserved hypothetical protein TIGR01177 | Back alignment and domain information |
|---|
Probab=99.16 E-value=7.6e-10 Score=90.09 Aligned_cols=113 Identities=19% Similarity=0.110 Sum_probs=82.4
Q ss_pred HHHHHHhhCCCCCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEE
Q 038343 9 LLSEFILSFPEIFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQC 88 (191)
Q Consensus 9 ~L~~~l~~~~~~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~ 88 (191)
.|+..+.......++.+|||.|||+|.+.+.++..+. +++++|+++.++..++.|++.++.. .+.+
T Consensus 169 ~la~~~~~l~~~~~g~~vLDp~cGtG~~lieaa~~~~-~v~g~Di~~~~~~~a~~nl~~~g~~-------------~i~~ 234 (329)
T TIGR01177 169 KLARAMVNLARVTEGDRVLDPFCGTGGFLIEAGLMGA-KVIGCDIDWKMVAGARINLEHYGIE-------------DFFV 234 (329)
T ss_pred HHHHHHHHHhCCCCcCEEEECCCCCCHHHHHHHHhCC-eEEEEcCCHHHHHHHHHHHHHhCCC-------------CCeE
Confidence 3455554444445678999999999999888888876 8999999999999999999887754 2455
Q ss_pred EeecCCCCCcCCCCCCCCCEEEEcccccCC----------CChHHHHHHHHHHhccCCCCc
Q 038343 89 VHLPWESASESGLSAFVPEIILGADILYDR----------SCFPDLVRILAILLNRRKSVS 139 (191)
Q Consensus 89 ~~ldw~~~~~~~~~~~~fDvIi~~d~ly~~----------~~~~~ll~~l~~ll~~~g~~~ 139 (191)
...|..+.. ..+++||+|++.. -|.. .....+++.+.+.|+|+|...
T Consensus 235 ~~~D~~~l~---~~~~~~D~Iv~dP-Pyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv 291 (329)
T TIGR01177 235 KRGDATKLP---LSSESVDAIATDP-PYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIV 291 (329)
T ss_pred EecchhcCC---cccCCCCEEEECC-CCcCcccccCCchHHHHHHHHHHHHHHccCCcEEE
Confidence 555554332 2346899999853 3421 125788999999999998544
|
This family is found exclusively in the Archaea. |
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=9.7e-10 Score=87.34 Aligned_cols=103 Identities=17% Similarity=0.029 Sum_probs=77.7
Q ss_pred CCCcEEEeCCCcc-HHHHHHHh-c-CCCeEEEEcCChHHHHHHHHHHHH-hcCCCCcccccccCCCCeeEEEeecCCCCC
Q 038343 22 SNKSCFEVGSGVG-LVGICLAH-V-KASKVTLTDGDHLTLANMRSNLEL-NQLSTDTSLLESYEDPNVVQCVHLPWESAS 97 (191)
Q Consensus 22 ~~~~VLElG~GtG-~~~~~la~-~-g~~~v~~tD~~~~~l~~~~~n~~~-n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~ 97 (191)
+.++|+|+|||.| +.++.+++ . ...+++++|+++++++.+++++.. .++. .++.+...|..+..
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~------------~rV~F~~~Da~~~~ 190 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLS------------KRMFFHTADVMDVT 190 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCcc------------CCcEEEECchhhcc
Confidence 6779999999955 66775553 3 334899999999999999999864 4433 46888888765432
Q ss_pred cCCCCCCCCCEEEEcccccC-CCChHHHHHHHHHHhccCCCCc
Q 038343 98 ESGLSAFVPEIILGADILYD-RSCFPDLVRILAILLNRRKSVS 139 (191)
Q Consensus 98 ~~~~~~~~fDvIi~~d~ly~-~~~~~~ll~~l~~ll~~~g~~~ 139 (191)
. ...+||+|++.-++|. ......+++.+.+.|+|||...
T Consensus 191 ~---~l~~FDlVF~~ALi~~dk~~k~~vL~~l~~~LkPGG~Lv 230 (296)
T PLN03075 191 E---SLKEYDVVFLAALVGMDKEEKVKVIEHLGKHMAPGALLM 230 (296)
T ss_pred c---ccCCcCEEEEecccccccccHHHHHHHHHHhcCCCcEEE
Confidence 1 1357999999844443 4799999999999999997543
|
|
| >KOG1271 consensus Methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.14 E-value=7e-10 Score=81.18 Aligned_cols=116 Identities=14% Similarity=0.130 Sum_probs=81.9
Q ss_pred HHHHHHHHhhCCC---CCCCC-cEEEeCCCccHHHHHHHhcCCC-eEEEEcCChHHHHHHHHHHHHhcCCCCcccccccC
Q 038343 7 SLLLSEFILSFPE---IFSNK-SCFEVGSGVGLVGICLAHVKAS-KVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYE 81 (191)
Q Consensus 7 a~~L~~~l~~~~~---~~~~~-~VLElG~GtG~~~~~la~~g~~-~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~ 81 (191)
-..+.+|+..+.. .-+.. +|||||||.|.+-.-+++-|.. ..+++|+++.+++.++..++.++..
T Consensus 48 e~riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~---------- 117 (227)
T KOG1271|consen 48 EERIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFS---------- 117 (227)
T ss_pred HHHHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCC----------
Confidence 4456667665433 11233 8999999999888888887654 5999999999999998777777765
Q ss_pred CCCeeEEEeecCCCCCcCCCCCCCCCEEEEc---cccc-CC----CChHHHHHHHHHHhccCCC
Q 038343 82 DPNVVQCVHLPWESASESGLSAFVPEIILGA---DILY-DR----SCFPDLVRILAILLNRRKS 137 (191)
Q Consensus 82 ~~~~i~~~~ldw~~~~~~~~~~~~fDvIi~~---d~ly-~~----~~~~~ll~~l~~ll~~~g~ 137 (191)
+.|++.++|..++ .+..++||+|+-- |.+- ++ ..+..-+..+.++|+|+|.
T Consensus 118 --n~I~f~q~DI~~~---~~~~~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gi 176 (227)
T KOG1271|consen 118 --NEIRFQQLDITDP---DFLSGQFDLVLDKGTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGI 176 (227)
T ss_pred --cceeEEEeeccCC---cccccceeEEeecCceeeeecCCCCcccceeeehhhHhhccCCCcE
Confidence 5689999998765 2344678888742 2221 11 1124457889999999873
|
|
| >PRK14904 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.6e-09 Score=90.26 Aligned_cols=99 Identities=18% Similarity=0.187 Sum_probs=71.7
Q ss_pred CCCCcEEEeCCCccHHHHHHHhc--CCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCc
Q 038343 21 FSNKSCFEVGSGVGLVGICLAHV--KASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASE 98 (191)
Q Consensus 21 ~~~~~VLElG~GtG~~~~~la~~--g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~ 98 (191)
.++.+|||+|||+|..++.++.. +..+|+++|.++.+++.+++|++.++.. ++.+...|.....
T Consensus 249 ~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~-------------~v~~~~~Da~~~~- 314 (445)
T PRK14904 249 QPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGIT-------------IIETIEGDARSFS- 314 (445)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCC-------------eEEEEeCcccccc-
Confidence 36789999999999888876653 2248999999999999999999887753 3666666654432
Q ss_pred CCCCCCCCCEEEEccccc-------CCC----------------ChHHHHHHHHHHhccCCC
Q 038343 99 SGLSAFVPEIILGADILY-------DRS----------------CFPDLVRILAILLNRRKS 137 (191)
Q Consensus 99 ~~~~~~~fDvIi~~d~ly-------~~~----------------~~~~ll~~l~~ll~~~g~ 137 (191)
...+||+|++ |+.+ ..+ ....++....++|+|||.
T Consensus 315 ---~~~~fD~Vl~-D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~ 372 (445)
T PRK14904 315 ---PEEQPDAILL-DAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGV 372 (445)
T ss_pred ---cCCCCCEEEE-cCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcE
Confidence 2357999985 2221 111 123589999999999974
|
|
| >smart00138 MeTrc Methyltransferase, chemotaxis proteins | Back alignment and domain information |
|---|
Probab=99.13 E-value=4.6e-10 Score=88.64 Aligned_cols=115 Identities=17% Similarity=0.087 Sum_probs=74.5
Q ss_pred CCCcEEEeCCCccH----HHHHHHhcC------CCeEEEEcCChHHHHHHHHHHH----HhcCCCC----ccccc-----
Q 038343 22 SNKSCFEVGSGVGL----VGICLAHVK------ASKVTLTDGDHLTLANMRSNLE----LNQLSTD----TSLLE----- 78 (191)
Q Consensus 22 ~~~~VLElG~GtG~----~~~~la~~g------~~~v~~tD~~~~~l~~~~~n~~----~n~~~~~----~~~~~----- 78 (191)
++.+|+|+|||||- +++.++..+ ..+|+++|+|+.+|+.+++.+- ..+.... .....
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~ 178 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR 178 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence 45699999999995 455555432 1389999999999999987541 1111000 00000
Q ss_pred -ccCCCCeeEEEeecCCCCCcCCCCCCCCCEEEEcccccCCC--ChHHHHHHHHHHhccCCCCc
Q 038343 79 -SYEDPNVVQCVHLPWESASESGLSAFVPEIILGADILYDRS--CFPDLVRILAILLNRRKSVS 139 (191)
Q Consensus 79 -~~~~~~~i~~~~ldw~~~~~~~~~~~~fDvIi~~d~ly~~~--~~~~ll~~l~~ll~~~g~~~ 139 (191)
...-...+.+...|..+.. .+.++||+|+|..++++.+ ....+++.+.+.|+|||...
T Consensus 179 v~~~ir~~V~F~~~dl~~~~---~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~ 239 (264)
T smart00138 179 VKPELKERVRFAKHNLLAES---PPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLF 239 (264)
T ss_pred EChHHhCcCEEeeccCCCCC---CccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEE
Confidence 0001135667777665432 2346899999999887764 45679999999999998533
|
Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. |
| >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.4e-09 Score=90.10 Aligned_cols=114 Identities=11% Similarity=0.045 Sum_probs=75.9
Q ss_pred HHHHHHHHhhCCCCCCCCcEEEeCCCccHHHHHHHhc-CCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCe
Q 038343 7 SLLLSEFILSFPEIFSNKSCFEVGSGVGLVGICLAHV-KASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNV 85 (191)
Q Consensus 7 a~~L~~~l~~~~~~~~~~~VLElG~GtG~~~~~la~~-g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~ 85 (191)
+..++.++. ..++.+|||+|||+|..++.++.. +..+|+++|.++.+++.+++|++.++.. ..
T Consensus 227 s~~~~~~L~----~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~------------~~ 290 (426)
T TIGR00563 227 AQWVATWLA----PQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLT------------IK 290 (426)
T ss_pred HHHHHHHhC----CCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCC------------eE
Confidence 444444442 235779999999999988877764 4358999999999999999999988754 12
Q ss_pred eEEEeecCCCCCcCCCCCCCCCEEEE------cccccCCCC----------------hHHHHHHHHHHhccCCC
Q 038343 86 VQCVHLPWESASESGLSAFVPEIILG------ADILYDRSC----------------FPDLVRILAILLNRRKS 137 (191)
Q Consensus 86 i~~~~ldw~~~~~~~~~~~~fDvIi~------~d~ly~~~~----------------~~~ll~~l~~ll~~~g~ 137 (191)
+.....|...... .....+||.|++ +.++...++ ...+++...++|+|||.
T Consensus 291 v~~~~~d~~~~~~-~~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~ 363 (426)
T TIGR00563 291 AETKDGDGRGPSQ-WAENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGT 363 (426)
T ss_pred EEEeccccccccc-cccccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcE
Confidence 2223333322110 012357999985 223433222 35788899999999973
|
The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. |
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=2e-09 Score=81.34 Aligned_cols=102 Identities=12% Similarity=0.155 Sum_probs=72.5
Q ss_pred CCCCCCcEEEeCCCccHHHHHHHhcC-CCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCC
Q 038343 19 EIFSNKSCFEVGSGVGLVGICLAHVK-ASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESAS 97 (191)
Q Consensus 19 ~~~~~~~VLElG~GtG~~~~~la~~g-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~ 97 (191)
...++.+|||+|||+|..++.+++.. ..+|+++|.++.+++.+++|++.++.. ++++...|..+..
T Consensus 37 ~~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~-------------~v~~~~~d~~~~~ 103 (196)
T PRK07402 37 RLEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVK-------------NVEVIEGSAPECL 103 (196)
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-------------CeEEEECchHHHH
Confidence 33467799999999999999877643 358999999999999999999887643 3555555543211
Q ss_pred cCCCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCc
Q 038343 98 ESGLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVS 139 (191)
Q Consensus 98 ~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~ 139 (191)
. .. ...+|.|+.. .....+.+++.+.++|+|+|...
T Consensus 104 ~-~~-~~~~d~v~~~----~~~~~~~~l~~~~~~LkpgG~li 139 (196)
T PRK07402 104 A-QL-APAPDRVCIE----GGRPIKEILQAVWQYLKPGGRLV 139 (196)
T ss_pred h-hC-CCCCCEEEEE----CCcCHHHHHHHHHHhcCCCeEEE
Confidence 1 11 1235665442 23456899999999999998644
|
|
| >PRK14901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.4e-09 Score=90.23 Aligned_cols=104 Identities=14% Similarity=0.051 Sum_probs=74.0
Q ss_pred CCCCcEEEeCCCccHHHHHHHhc-C-CCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCc
Q 038343 21 FSNKSCFEVGSGVGLVGICLAHV-K-ASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASE 98 (191)
Q Consensus 21 ~~~~~VLElG~GtG~~~~~la~~-g-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~ 98 (191)
.++.+|||+|||+|..++.++.. + ..+|+++|.++.+++.+++|++.++.. ++.+...|......
T Consensus 251 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~-------------~v~~~~~D~~~~~~ 317 (434)
T PRK14901 251 QPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLK-------------SIKILAADSRNLLE 317 (434)
T ss_pred CCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCC-------------eEEEEeCChhhccc
Confidence 36779999999999988877764 2 248999999999999999999988754 35666666443321
Q ss_pred CC-CCCCCCCEEEEc------ccccCCCC----------------hHHHHHHHHHHhccCCC
Q 038343 99 SG-LSAFVPEIILGA------DILYDRSC----------------FPDLVRILAILLNRRKS 137 (191)
Q Consensus 99 ~~-~~~~~fDvIi~~------d~ly~~~~----------------~~~ll~~l~~ll~~~g~ 137 (191)
.. ...++||.|++- .++...++ ...++....++|+|||.
T Consensus 318 ~~~~~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~ 379 (434)
T PRK14901 318 LKPQWRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGT 379 (434)
T ss_pred ccccccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCE
Confidence 10 123579999961 23332222 35778899999999973
|
|
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.6e-09 Score=78.87 Aligned_cols=98 Identities=14% Similarity=0.106 Sum_probs=78.1
Q ss_pred CCCCCcEEEeCCCccHHHHHHHhcCC-CeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCc
Q 038343 20 IFSNKSCFEVGSGVGLVGICLAHVKA-SKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASE 98 (191)
Q Consensus 20 ~~~~~~VLElG~GtG~~~~~la~~g~-~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~ 98 (191)
..++.+++|+|||||.+++.++..+. .+|+++|.++++++.+++|.+..+.+ ++.+...+--+...
T Consensus 32 ~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~-------------n~~vv~g~Ap~~L~ 98 (187)
T COG2242 32 PRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVD-------------NLEVVEGDAPEALP 98 (187)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCC-------------cEEEEeccchHhhc
Confidence 44788999999999999998886654 39999999999999999999998843 57777766433321
Q ss_pred CCCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCC
Q 038343 99 SGLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKS 137 (191)
Q Consensus 99 ~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~ 137 (191)
...+||.|+...- ...+.+++++...|+|+|+
T Consensus 99 ---~~~~~daiFIGGg----~~i~~ile~~~~~l~~ggr 130 (187)
T COG2242 99 ---DLPSPDAIFIGGG----GNIEEILEAAWERLKPGGR 130 (187)
T ss_pred ---CCCCCCEEEECCC----CCHHHHHHHHHHHcCcCCe
Confidence 1126999987543 6799999999999999973
|
|
| >TIGR02081 metW methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Probab=99.11 E-value=6.1e-10 Score=83.97 Aligned_cols=92 Identities=10% Similarity=0.053 Sum_probs=66.0
Q ss_pred CCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCCC
Q 038343 22 SNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESGL 101 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~~ 101 (191)
++.+|||+|||+|..+..++......++++|+++++++.++. ++ +.+...+..+... .+
T Consensus 13 ~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~----~~----------------~~~~~~d~~~~l~-~~ 71 (194)
T TIGR02081 13 PGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVA----RG----------------VNVIQGDLDEGLE-AF 71 (194)
T ss_pred CCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHH----cC----------------CeEEEEEhhhccc-cc
Confidence 466999999999988887765443478999999998877653 12 2334444433111 13
Q ss_pred CCCCCCEEEEcccccCCCChHHHHHHHHHHhcc
Q 038343 102 SAFVPEIILGADILYDRSCFPDLVRILAILLNR 134 (191)
Q Consensus 102 ~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~ 134 (191)
.+++||+|+++.++++..+...+++.+.+.+++
T Consensus 72 ~~~sfD~Vi~~~~l~~~~d~~~~l~e~~r~~~~ 104 (194)
T TIGR02081 72 PDKSFDYVILSQTLQATRNPEEILDEMLRVGRH 104 (194)
T ss_pred CCCCcCEEEEhhHhHcCcCHHHHHHHHHHhCCe
Confidence 446899999999999998888888877766553
|
This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. |
| >COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.11 E-value=6.3e-10 Score=82.44 Aligned_cols=104 Identities=13% Similarity=0.125 Sum_probs=74.2
Q ss_pred CCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcC
Q 038343 20 IFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASES 99 (191)
Q Consensus 20 ~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~ 99 (191)
.+.|.++|||.+|+|.+|+.+.+.|+.+++++|.+..++..+++|++.-+.. .+..+...|-......
T Consensus 41 ~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~------------~~~~~~~~da~~~L~~ 108 (187)
T COG0742 41 EIEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLE------------GEARVLRNDALRALKQ 108 (187)
T ss_pred ccCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCc------------cceEEEeecHHHHHHh
Confidence 3689999999999999999999999999999999999999999999887744 2334444332211111
Q ss_pred CCCCCCCCEEEEcccccCCCChHHHHHHHH----HHhccCC
Q 038343 100 GLSAFVPEIILGADILYDRSCFPDLVRILA----ILLNRRK 136 (191)
Q Consensus 100 ~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~----~ll~~~g 136 (191)
.-...+||+|+. |.-|.....+..+..+. .+|+|++
T Consensus 109 ~~~~~~FDlVfl-DPPy~~~l~~~~~~~~~~~~~~~L~~~~ 148 (187)
T COG0742 109 LGTREPFDLVFL-DPPYAKGLLDKELALLLLEENGWLKPGA 148 (187)
T ss_pred cCCCCcccEEEe-CCCCccchhhHHHHHHHHHhcCCcCCCc
Confidence 111125999997 88888666644444443 4677774
|
|
| >PRK14902 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=3.1e-09 Score=89.86 Aligned_cols=100 Identities=14% Similarity=0.080 Sum_probs=73.0
Q ss_pred CCCcEEEeCCCccHHHHHHHhc--CCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcC
Q 038343 22 SNKSCFEVGSGVGLVGICLAHV--KASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASES 99 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~--g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~ 99 (191)
++.+|||+|||+|..++.+++. +..+|+++|+++.+++.+++|++.++.. ++.+...|..+...
T Consensus 250 ~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~-------------~v~~~~~D~~~~~~- 315 (444)
T PRK14902 250 GGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLT-------------NIETKALDARKVHE- 315 (444)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-------------eEEEEeCCcccccc-
Confidence 5679999999999999877764 2358999999999999999999988754 36777777654321
Q ss_pred CCCCCCCCEEEEcccccC--------CC--------C-------hHHHHHHHHHHhccCCC
Q 038343 100 GLSAFVPEIILGADILYD--------RS--------C-------FPDLVRILAILLNRRKS 137 (191)
Q Consensus 100 ~~~~~~fDvIi~~d~ly~--------~~--------~-------~~~ll~~l~~ll~~~g~ 137 (191)
.+. ++||+|++. .-+. ++ + ...+++...++|+|||.
T Consensus 316 ~~~-~~fD~Vl~D-~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~ 374 (444)
T PRK14902 316 KFA-EKFDKILVD-APCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGI 374 (444)
T ss_pred hhc-ccCCEEEEc-CCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCE
Confidence 122 579999973 2211 10 1 13578888999999975
|
|
| >PLN02781 Probable caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.10 E-value=3.2e-10 Score=88.00 Aligned_cols=102 Identities=14% Similarity=0.087 Sum_probs=76.4
Q ss_pred CCCCcEEEeCCCccHHHHHHHhc--CCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCc
Q 038343 21 FSNKSCFEVGSGVGLVGICLAHV--KASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASE 98 (191)
Q Consensus 21 ~~~~~VLElG~GtG~~~~~la~~--g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~ 98 (191)
.+.++|||+|||+|..++.++.. +..+|+++|.++++++.+++|++.+++. .++++...+..+...
T Consensus 67 ~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~------------~~i~~~~gda~~~L~ 134 (234)
T PLN02781 67 MNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVD------------HKINFIQSDALSALD 134 (234)
T ss_pred hCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC------------CcEEEEEccHHHHHH
Confidence 36779999999999888866553 3459999999999999999999999875 467777777654321
Q ss_pred C---CCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCC
Q 038343 99 S---GLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKS 137 (191)
Q Consensus 99 ~---~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~ 137 (191)
. ....++||+|+. |. ....+..++..+.++|+|||.
T Consensus 135 ~l~~~~~~~~fD~Vfi-Da--~k~~y~~~~~~~~~ll~~GG~ 173 (234)
T PLN02781 135 QLLNNDPKPEFDFAFV-DA--DKPNYVHFHEQLLKLVKVGGI 173 (234)
T ss_pred HHHhCCCCCCCCEEEE-CC--CHHHHHHHHHHHHHhcCCCeE
Confidence 1 011357999987 32 234566788999999999973
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.10 E-value=1e-11 Score=93.74 Aligned_cols=98 Identities=21% Similarity=0.193 Sum_probs=73.0
Q ss_pred CCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCCCC
Q 038343 23 NKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESGLS 102 (191)
Q Consensus 23 ~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~~~ 102 (191)
-+++||||||||+.|..+-.+ +.+.+++|+|..|++.+.++=-...+- ......+... ..
T Consensus 126 F~~~lDLGCGTGL~G~~lR~~-a~~ltGvDiS~nMl~kA~eKg~YD~L~---------------~Aea~~Fl~~----~~ 185 (287)
T COG4976 126 FRRMLDLGCGTGLTGEALRDM-ADRLTGVDISENMLAKAHEKGLYDTLY---------------VAEAVLFLED----LT 185 (287)
T ss_pred cceeeecccCcCcccHhHHHH-HhhccCCchhHHHHHHHHhccchHHHH---------------HHHHHHHhhh----cc
Confidence 468999999999999988887 458999999999998886532111100 0001111111 23
Q ss_pred CCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCcc
Q 038343 103 AFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVSS 140 (191)
Q Consensus 103 ~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~~ 140 (191)
..+||+|.++||+-+...++.++-....+|+|+|-..+
T Consensus 186 ~er~DLi~AaDVl~YlG~Le~~~~~aa~~L~~gGlfaF 223 (287)
T COG4976 186 QERFDLIVAADVLPYLGALEGLFAGAAGLLAPGGLFAF 223 (287)
T ss_pred CCcccchhhhhHHHhhcchhhHHHHHHHhcCCCceEEE
Confidence 35899999999999999999999999999999986554
|
|
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=1e-09 Score=86.49 Aligned_cols=104 Identities=13% Similarity=0.120 Sum_probs=73.1
Q ss_pred CCCcEEEeCCCccHHHHHHHhc-CCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCC
Q 038343 22 SNKSCFEVGSGVGLVGICLAHV-KASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESG 100 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~-g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~ 100 (191)
+.++|||||||+|.++..+++. +..+++++|+++++++.+++++..+... .++++...|..+....
T Consensus 66 ~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~------------~rv~v~~~Da~~~l~~- 132 (262)
T PRK04457 66 RPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENG------------ERFEVIEADGAEYIAV- 132 (262)
T ss_pred CCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCC------------CceEEEECCHHHHHHh-
Confidence 4568999999999999877654 3358999999999999999887544321 3566666664322111
Q ss_pred CCCCCCCEEEEcccccCCC-----ChHHHHHHHHHHhccCCCCcc
Q 038343 101 LSAFVPEIILGADILYDRS-----CFPDLVRILAILLNRRKSVSS 140 (191)
Q Consensus 101 ~~~~~fDvIi~~d~ly~~~-----~~~~ll~~l~~ll~~~g~~~~ 140 (191)
...+||+|+. |.+.... ....+++.+++.|+|+|....
T Consensus 133 -~~~~yD~I~~-D~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvi 175 (262)
T PRK04457 133 -HRHSTDVILV-DGFDGEGIIDALCTQPFFDDCRNALSSDGIFVV 175 (262)
T ss_pred -CCCCCCEEEE-eCCCCCCCccccCcHHHHHHHHHhcCCCcEEEE
Confidence 1247999997 4332221 237899999999999986543
|
|
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.5e-09 Score=83.08 Aligned_cols=129 Identities=11% Similarity=-0.030 Sum_probs=84.0
Q ss_pred HHHHHHHHhhCCCCCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccc--cccCCCC
Q 038343 7 SLLLSEFILSFPEIFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLL--ESYEDPN 84 (191)
Q Consensus 7 a~~L~~~l~~~~~~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~--~~~~~~~ 84 (191)
...|.+++..... .++.+||++|||.|.-++++|..|. +|+++|+++.+++.+.. .++........ .......
T Consensus 20 ~~~l~~~~~~l~~-~~~~rvLd~GCG~G~da~~LA~~G~-~V~gvD~S~~Ai~~~~~---~~~~~~~~~~~~~~~~~~~~ 94 (213)
T TIGR03840 20 NPLLVKHWPALGL-PAGARVFVPLCGKSLDLAWLAEQGH-RVLGVELSEIAVEQFFA---ENGLTPTVTQQGEFTRYRAG 94 (213)
T ss_pred CHHHHHHHHhhCC-CCCCeEEEeCCCchhHHHHHHhCCC-eEEEEeCCHHHHHHHHH---HcCCCcceeccccceeeecC
Confidence 4566677655321 2566999999999999999999998 89999999999997532 22221100000 0000123
Q ss_pred eeEEEeecCCCCCcCCCCCCCCCEEEEcccccCC--CChHHHHHHHHHHhccCCCCcccc
Q 038343 85 VVQCVHLPWESASESGLSAFVPEIILGADILYDR--SCFPDLVRILAILLNRRKSVSSSR 142 (191)
Q Consensus 85 ~i~~~~ldw~~~~~~~~~~~~fDvIi~~d~ly~~--~~~~~ll~~l~~ll~~~g~~~~~~ 142 (191)
++++...|..+.... ..+.||.|+-.-++.+. +..+..++.+.++|+|||....+.
T Consensus 95 ~v~~~~~D~~~~~~~--~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~ 152 (213)
T TIGR03840 95 NIEIFCGDFFALTAA--DLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLIT 152 (213)
T ss_pred ceEEEEccCCCCCcc--cCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEE
Confidence 566677776544321 12469999987666543 345678999999999998644443
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >PRK05031 tRNA (uracil-5-)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.1e-09 Score=90.08 Aligned_cols=107 Identities=17% Similarity=0.147 Sum_probs=70.7
Q ss_pred HHHHHHHHhhCCCCCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCee
Q 038343 7 SLLLSEFILSFPEIFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVV 86 (191)
Q Consensus 7 a~~L~~~l~~~~~~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i 86 (191)
+..|.+++...... .+.+||||+||+|.+++.+++. +++|+++|.++.+++.+++|+..|++. ++
T Consensus 192 ~e~l~~~v~~~~~~-~~~~vLDl~~G~G~~sl~la~~-~~~v~~vE~~~~ai~~a~~N~~~~~~~-------------~v 256 (362)
T PRK05031 192 NEKMLEWALDATKG-SKGDLLELYCGNGNFTLALARN-FRRVLATEISKPSVAAAQYNIAANGID-------------NV 256 (362)
T ss_pred HHHHHHHHHHHhhc-CCCeEEEEeccccHHHHHHHhh-CCEEEEEECCHHHHHHHHHHHHHhCCC-------------cE
Confidence 44555555443221 2347999999999999988876 459999999999999999999999864 45
Q ss_pred EEEeecCCCCCcCCC-------------CCCCCCEEEEcccccCCCChHHHHHHHHH
Q 038343 87 QCVHLPWESASESGL-------------SAFVPEIILGADILYDRSCFPDLVRILAI 130 (191)
Q Consensus 87 ~~~~ldw~~~~~~~~-------------~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ 130 (191)
.+...|..+...... ...+||+|+. |.-+ ....+.+++.|.+
T Consensus 257 ~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~D~v~l-DPPR-~G~~~~~l~~l~~ 311 (362)
T PRK05031 257 QIIRMSAEEFTQAMNGVREFNRLKGIDLKSYNFSTIFV-DPPR-AGLDDETLKLVQA 311 (362)
T ss_pred EEEECCHHHHHHHHhhcccccccccccccCCCCCEEEE-CCCC-CCCcHHHHHHHHc
Confidence 666666543211000 0225899888 5555 3344555555543
|
|
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.9e-09 Score=82.34 Aligned_cols=96 Identities=7% Similarity=-0.029 Sum_probs=66.4
Q ss_pred CCCCcEEEeCCCccHHHHHHHhcC-C-CeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCc
Q 038343 21 FSNKSCFEVGSGVGLVGICLAHVK-A-SKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASE 98 (191)
Q Consensus 21 ~~~~~VLElG~GtG~~~~~la~~g-~-~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~ 98 (191)
.++.+|||||||+|..+..+++.. . .+|+++|+++ + +.. ..+.+...|+.+...
T Consensus 50 ~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~----------~~~-------------~~v~~i~~D~~~~~~ 105 (209)
T PRK11188 50 KPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-M----------DPI-------------VGVDFLQGDFRDELV 105 (209)
T ss_pred CCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-c----------cCC-------------CCcEEEecCCCChHH
Confidence 467799999999999998777653 2 4899999986 1 111 236677778765420
Q ss_pred -----CCCCCCCCCEEEEcccccCCCC-----------hHHHHHHHHHHhccCCCCcc
Q 038343 99 -----SGLSAFVPEIILGADILYDRSC-----------FPDLVRILAILLNRRKSVSS 140 (191)
Q Consensus 99 -----~~~~~~~fDvIi~~d~ly~~~~-----------~~~ll~~l~~ll~~~g~~~~ 140 (191)
..+...+||+|++.-..+.... .+.+++.+.++|+|||....
T Consensus 106 ~~~i~~~~~~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi 163 (209)
T PRK11188 106 LKALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVV 163 (209)
T ss_pred HHHHHHHhCCCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEE
Confidence 1134468999998654543322 25689999999999986544
|
|
| >TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.4e-09 Score=89.26 Aligned_cols=62 Identities=18% Similarity=0.212 Sum_probs=48.2
Q ss_pred HHHHHHHhhCCCCCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCC
Q 038343 8 LLLSEFILSFPEIFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLS 71 (191)
Q Consensus 8 ~~L~~~l~~~~~~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~ 71 (191)
..|.+++...... .+.+|||||||+|.+++.+++.. .+|+++|.++.+++.+++|++.|++.
T Consensus 184 ~~l~~~v~~~~~~-~~~~vlDl~~G~G~~sl~la~~~-~~v~~vE~~~~av~~a~~n~~~~~~~ 245 (353)
T TIGR02143 184 IKMLEWACEVTQG-SKGDLLELYCGNGNFSLALAQNF-RRVLATEIAKPSVNAAQYNIAANNID 245 (353)
T ss_pred HHHHHHHHHHhhc-CCCcEEEEeccccHHHHHHHHhC-CEEEEEECCHHHHHHHHHHHHHcCCC
Confidence 3444444443321 23479999999999999888774 59999999999999999999999864
|
This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA. |
| >TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Probab=99.07 E-value=4.3e-09 Score=83.13 Aligned_cols=100 Identities=8% Similarity=0.015 Sum_probs=69.9
Q ss_pred CCCcEEEeCCCccHHHHHHHhc-C-CCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcC
Q 038343 22 SNKSCFEVGSGVGLVGICLAHV-K-ASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASES 99 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~-g-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~ 99 (191)
++.+|||+|||+|..++.++.. + ...|+++|.++.+++.+++|++.++.. ++.+...|......
T Consensus 71 ~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~-------------~v~~~~~D~~~~~~- 136 (264)
T TIGR00446 71 PPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVL-------------NVAVTNFDGRVFGA- 136 (264)
T ss_pred CcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCC-------------cEEEecCCHHHhhh-
Confidence 6779999999999988877664 2 248999999999999999999998753 35555555432211
Q ss_pred CCCCCCCCEEEEcc------cccCCC----------------ChHHHHHHHHHHhccCCC
Q 038343 100 GLSAFVPEIILGAD------ILYDRS----------------CFPDLVRILAILLNRRKS 137 (191)
Q Consensus 100 ~~~~~~fDvIi~~d------~ly~~~----------------~~~~ll~~l~~ll~~~g~ 137 (191)
...+||.|+.-- ++...+ ....+++...++|+|||.
T Consensus 137 --~~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~ 194 (264)
T TIGR00446 137 --AVPKFDAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGV 194 (264)
T ss_pred --hccCCCEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCE
Confidence 124699998621 111111 124588888889999973
|
|
| >PRK10901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=6.8e-09 Score=87.33 Aligned_cols=103 Identities=14% Similarity=0.063 Sum_probs=72.3
Q ss_pred CCCCcEEEeCCCccHHHHHHHhcCC-CeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcC
Q 038343 21 FSNKSCFEVGSGVGLVGICLAHVKA-SKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASES 99 (191)
Q Consensus 21 ~~~~~VLElG~GtG~~~~~la~~g~-~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~ 99 (191)
.++.+|||+|||+|..++.++..+. .+|+++|.++.+++.+++|++.++.. +.+...|..+...
T Consensus 243 ~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~--------------~~~~~~D~~~~~~- 307 (427)
T PRK10901 243 QNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLK--------------ATVIVGDARDPAQ- 307 (427)
T ss_pred CCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCC--------------eEEEEcCcccchh-
Confidence 3678999999999999988777643 48999999999999999999888743 3455555443211
Q ss_pred CCCCCCCCEEEEccccc------CCC------C----------hHHHHHHHHHHhccCCCC
Q 038343 100 GLSAFVPEIILGADILY------DRS------C----------FPDLVRILAILLNRRKSV 138 (191)
Q Consensus 100 ~~~~~~fDvIi~~d~ly------~~~------~----------~~~ll~~l~~ll~~~g~~ 138 (191)
.....+||.|++.-... ..+ . ...+++...++|+|||..
T Consensus 308 ~~~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~l 368 (427)
T PRK10901 308 WWDGQPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTL 368 (427)
T ss_pred hcccCCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEE
Confidence 12235799999522111 000 1 236888999999999853
|
|
| >COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.06 E-value=3.5e-09 Score=79.75 Aligned_cols=111 Identities=17% Similarity=0.128 Sum_probs=80.2
Q ss_pred HHHHHHhhCCCCCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEE
Q 038343 9 LLSEFILSFPEIFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQC 88 (191)
Q Consensus 9 ~L~~~l~~~~~~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~ 88 (191)
.+...+.+.....++.+|||+|||+|..+..++++.. +|+.+|..++..+.+++|++..+.. ++.+
T Consensus 59 ~~vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~~-~V~siEr~~~L~~~A~~~L~~lg~~-------------nV~v 124 (209)
T COG2518 59 HMVARMLQLLELKPGDRVLEIGTGSGYQAAVLARLVG-RVVSIERIEELAEQARRNLETLGYE-------------NVTV 124 (209)
T ss_pred HHHHHHHHHhCCCCCCeEEEECCCchHHHHHHHHHhC-eEEEEEEcHHHHHHHHHHHHHcCCC-------------ceEE
Confidence 3333444444555788999999999999999999965 9999999999999999999988864 3677
Q ss_pred EeecCCCCCcCCCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCcccc
Q 038343 89 VHLPWESASESGLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVSSSR 142 (191)
Q Consensus 89 ~~ldw~~~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~~~~ 142 (191)
...|=..-. .+..+||.|+..-.. +.+-+.+.+-|++||+...-.
T Consensus 125 ~~gDG~~G~---~~~aPyD~I~Vtaaa------~~vP~~Ll~QL~~gGrlv~Pv 169 (209)
T COG2518 125 RHGDGSKGW---PEEAPYDRIIVTAAA------PEVPEALLDQLKPGGRLVIPV 169 (209)
T ss_pred EECCcccCC---CCCCCcCEEEEeecc------CCCCHHHHHhcccCCEEEEEE
Confidence 776633221 123689999875432 223356677788998766433
|
|
| >PRK14903 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=5.6e-09 Score=87.86 Aligned_cols=101 Identities=14% Similarity=0.033 Sum_probs=72.5
Q ss_pred CCCCcEEEeCCCccHHHHHHHhc--CCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCc
Q 038343 21 FSNKSCFEVGSGVGLVGICLAHV--KASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASE 98 (191)
Q Consensus 21 ~~~~~VLElG~GtG~~~~~la~~--g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~ 98 (191)
.++.+|||+|||+|..++.++.. +..+|+++|+++.+++.+++|++..+.. ++.+...|......
T Consensus 236 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~-------------~v~~~~~Da~~l~~ 302 (431)
T PRK14903 236 EPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLS-------------SIEIKIADAERLTE 302 (431)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCC-------------eEEEEECchhhhhh
Confidence 36779999999999888877664 2348999999999999999999887753 35666666543321
Q ss_pred CCCCCCCCCEEEEcccccC-------CC----------------ChHHHHHHHHHHhccCCC
Q 038343 99 SGLSAFVPEIILGADILYD-------RS----------------CFPDLVRILAILLNRRKS 137 (191)
Q Consensus 99 ~~~~~~~fDvIi~~d~ly~-------~~----------------~~~~ll~~l~~ll~~~g~ 137 (191)
...++||.|++ |+.+. .+ ....++....++|+|||.
T Consensus 303 --~~~~~fD~Vl~-DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~ 361 (431)
T PRK14903 303 --YVQDTFDRILV-DAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGI 361 (431)
T ss_pred --hhhccCCEEEE-CCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCE
Confidence 12357999997 22221 11 125568888899999974
|
|
| >TIGR00478 tly hemolysin TlyA family protein | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.2e-09 Score=84.10 Aligned_cols=110 Identities=19% Similarity=0.125 Sum_probs=75.3
Q ss_pred ccccHHHHHHHHhhCCCCCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHH-HHHHHHHhcCCCCcccccccC
Q 038343 3 IWPSSLLLSEFILSFPEIFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLAN-MRSNLELNQLSTDTSLLESYE 81 (191)
Q Consensus 3 ~W~~a~~L~~~l~~~~~~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~-~~~n~~~n~~~~~~~~~~~~~ 81 (191)
++.++..|...+......+++++|||+|||||.++..+++.|+++|+++|.++.++.. ++.+.+....
T Consensus 56 vsr~~~kL~~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l~~~~~v~~~----------- 124 (228)
T TIGR00478 56 VSRGGEKLKEALEEFNIDVKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLRQDERVKVL----------- 124 (228)
T ss_pred hhhhHHHHHHHHHhcCCCCCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHhcCCCeeEe-----------
Confidence 4567888888888776667899999999999999999999998899999999977754 3322110000
Q ss_pred CCCeeEEEeecCCCCCcCCCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCC
Q 038343 82 DPNVVQCVHLPWESASESGLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKS 137 (191)
Q Consensus 82 ~~~~i~~~~ldw~~~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~ 137 (191)
....+..++|++... .-..+|+++++- ..++..+..+|++ |.
T Consensus 125 --~~~ni~~~~~~~~~~---d~~~~DvsfiS~--------~~~l~~i~~~l~~-~~ 166 (228)
T TIGR00478 125 --ERTNIRYVTPADIFP---DFATFDVSFISL--------ISILPELDLLLNP-ND 166 (228)
T ss_pred --ecCCcccCCHhHcCC---CceeeeEEEeeh--------HhHHHHHHHHhCc-Ce
Confidence 011223455655431 113678877753 3358889999998 44
|
Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479). |
| >KOG2920 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.06 E-value=6.5e-11 Score=92.32 Aligned_cols=131 Identities=21% Similarity=0.220 Sum_probs=87.4
Q ss_pred cccccHHHHHHHHhhC---CCCCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHH-HHHHHhcCCCCcccc
Q 038343 2 SIWPSSLLLSEFILSF---PEIFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMR-SNLELNQLSTDTSLL 77 (191)
Q Consensus 2 ~~W~~a~~L~~~l~~~---~~~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~-~n~~~n~~~~~~~~~ 77 (191)
.+|+++..|..++... .-.+.+++|||||||+|+.++.+...|...+.+.|++.+.++... .|+..|-....
T Consensus 93 k~wecS~dl~~~l~~e~~~~~~~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~~~t~pn~~~~~~~~~---- 168 (282)
T KOG2920|consen 93 KLWECSVDLLPYLKEEIGAQMSFSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLRLVTLPNILVNSHAGV---- 168 (282)
T ss_pred EEeecHHHHHHHHHHHhhhheEecCceeEecCCcccccchhhhhhccceeeeEecchhheeeecccceecchhhhh----
Confidence 5899999999999854 335689999999999999999999988779999999988884322 22222211100
Q ss_pred cccCCCCeeEEEee---cCCCCCcCCCCCCCCCEEEEcccccCCCChHHH-HHHHHHHhccCCCCc
Q 038343 78 ESYEDPNVVQCVHL---PWESASESGLSAFVPEIILGADILYDRSCFPDL-VRILAILLNRRKSVS 139 (191)
Q Consensus 78 ~~~~~~~~i~~~~l---dw~~~~~~~~~~~~fDvIi~~d~ly~~~~~~~l-l~~l~~ll~~~g~~~ 139 (191)
+..+......+..- ||...... ...||+|+++.++|.+.....+ ......+++++|...
T Consensus 169 ~~~e~~~~~~i~~s~l~dg~~~~t~---~~~ydlIlsSetiy~~~~~~~~~~~~r~~l~~~D~~~~ 231 (282)
T KOG2920|consen 169 EEKENHKVDEILNSLLSDGVFNHTE---RTHYDLILSSETIYSIDSLAVLYLLHRPCLLKTDGVFY 231 (282)
T ss_pred hhhhcccceeccccccccchhhhcc---ccchhhhhhhhhhhCcchhhhhHhhhhhhcCCccchhh
Confidence 00000011111111 55222111 1279999999999999998888 667777777776433
|
|
| >PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins | Back alignment and domain information |
|---|
Probab=99.06 E-value=4.5e-10 Score=83.36 Aligned_cols=88 Identities=9% Similarity=0.048 Sum_probs=68.0
Q ss_pred CCCcEEEeCCCccHHHHHHHh-cCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCC
Q 038343 22 SNKSCFEVGSGVGLVGICLAH-VKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESG 100 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~-~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~ 100 (191)
++.+|||||||.|.+-..+.. .+. +.+++|++++.+..+. .++ +.+.+.|.++.. ..
T Consensus 13 pgsrVLDLGCGdG~LL~~L~~~k~v-~g~GvEid~~~v~~cv----~rG----------------v~Viq~Dld~gL-~~ 70 (193)
T PF07021_consen 13 PGSRVLDLGCGDGELLAYLKDEKQV-DGYGVEIDPDNVAACV----ARG----------------VSVIQGDLDEGL-AD 70 (193)
T ss_pred CCCEEEecCCCchHHHHHHHHhcCC-eEEEEecCHHHHHHHH----HcC----------------CCEEECCHHHhH-hh
Confidence 677999999999966665555 444 8999999987665443 233 567888887653 34
Q ss_pred CCCCCCCEEEEcccccCCCChHHHHHHHHHH
Q 038343 101 LSAFVPEIILGADILYDRSCFPDLVRILAIL 131 (191)
Q Consensus 101 ~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~l 131 (191)
+++++||+||.++++.....++.+|+.+.++
T Consensus 71 f~d~sFD~VIlsqtLQ~~~~P~~vL~EmlRV 101 (193)
T PF07021_consen 71 FPDQSFDYVILSQTLQAVRRPDEVLEEMLRV 101 (193)
T ss_pred CCCCCccEEehHhHHHhHhHHHHHHHHHHHh
Confidence 7788999999999999998888887777555
|
Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells []. |
| >COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.05 E-value=4.3e-09 Score=81.08 Aligned_cols=111 Identities=17% Similarity=0.082 Sum_probs=84.5
Q ss_pred HHhhCCCCCCCCcEEEeCCCccHHHHHHHh-cCC-CeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEe
Q 038343 13 FILSFPEIFSNKSCFEVGSGVGLVGICLAH-VKA-SKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVH 90 (191)
Q Consensus 13 ~l~~~~~~~~~~~VLElG~GtG~~~~~la~-~g~-~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ 90 (191)
||.......+|.+|||.|.|+|.++.+++. .|. .+|+..|+.++.++.+++|++..++. +.+....
T Consensus 85 ~I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~------------d~v~~~~ 152 (256)
T COG2519 85 YIVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLG------------DRVTLKL 152 (256)
T ss_pred HHHHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccc------------cceEEEe
Confidence 344445567899999999999999998886 444 59999999999999999999988655 3355555
Q ss_pred ecCCCCCcCCCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCccccccCC
Q 038343 91 LPWESASESGLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVSSSRKESS 146 (191)
Q Consensus 91 ldw~~~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~~~~~~~~ 146 (191)
.|..+... ...||.|+. +.+++...++.+..+|+|||.. ++.+|+
T Consensus 153 ~Dv~~~~~----~~~vDav~L-----Dmp~PW~~le~~~~~Lkpgg~~--~~y~P~ 197 (256)
T COG2519 153 GDVREGID----EEDVDAVFL-----DLPDPWNVLEHVSDALKPGGVV--VVYSPT 197 (256)
T ss_pred cccccccc----ccccCEEEE-----cCCChHHHHHHHHHHhCCCcEE--EEEcCC
Confidence 55543322 237999876 7788999999999999999643 334444
|
|
| >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=4.6e-09 Score=84.96 Aligned_cols=105 Identities=11% Similarity=0.046 Sum_probs=73.2
Q ss_pred HHhhCCCCCCCCcEEEeCCCccHHHHHHHhcCC--CeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEe
Q 038343 13 FILSFPEIFSNKSCFEVGSGVGLVGICLAHVKA--SKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVH 90 (191)
Q Consensus 13 ~l~~~~~~~~~~~VLElG~GtG~~~~~la~~g~--~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ 90 (191)
++.+.....++.+|||+|||+|..+..+++... .+|+++|.++++++.++++++.++.. ++.+..
T Consensus 71 ~ll~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~-------------nV~~i~ 137 (322)
T PRK13943 71 LFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIE-------------NVIFVC 137 (322)
T ss_pred HHHHhcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCC-------------cEEEEe
Confidence 333333444678999999999999998887532 36999999999999999999887753 355555
Q ss_pred ecCCCCCcCCCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCc
Q 038343 91 LPWESASESGLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVS 139 (191)
Q Consensus 91 ldw~~~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~ 139 (191)
.|..+... ...+||+|+++.. .+.+...+.+.|+|+|...
T Consensus 138 gD~~~~~~---~~~~fD~Ii~~~g------~~~ip~~~~~~LkpgG~Lv 177 (322)
T PRK13943 138 GDGYYGVP---EFAPYDVIFVTVG------VDEVPETWFTQLKEGGRVI 177 (322)
T ss_pred CChhhccc---ccCCccEEEECCc------hHHhHHHHHHhcCCCCEEE
Confidence 55432211 1246999998532 2234456778899998644
|
|
| >KOG2904 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.5e-09 Score=82.95 Aligned_cols=86 Identities=17% Similarity=0.227 Sum_probs=64.6
Q ss_pred CCCCCCcEEEeCCCccHHHHHH-HhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCC
Q 038343 19 EIFSNKSCFEVGSGVGLVGICL-AHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESAS 97 (191)
Q Consensus 19 ~~~~~~~VLElG~GtG~~~~~l-a~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~ 97 (191)
..+++..+||+|||+|.+++.+ ..++...|+++|.++.++..+.+|++.+++. +.+.++..+.+...
T Consensus 145 ~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~------------g~i~v~~~~me~d~ 212 (328)
T KOG2904|consen 145 EHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLS------------GRIEVIHNIMESDA 212 (328)
T ss_pred hhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhc------------CceEEEeccccccc
Confidence 3345668999999999999955 4466669999999999999999999999887 56777755443322
Q ss_pred cC--CCCCCCCCEEEEccccc
Q 038343 98 ES--GLSAFVPEIILGADILY 116 (191)
Q Consensus 98 ~~--~~~~~~fDvIi~~d~ly 116 (191)
.. ....+++|+++++...-
T Consensus 213 ~~~~~l~~~~~dllvsNPPYI 233 (328)
T KOG2904|consen 213 SDEHPLLEGKIDLLVSNPPYI 233 (328)
T ss_pred ccccccccCceeEEecCCCcc
Confidence 11 13457899999876543
|
|
| >COG4106 Tam Trans-aconitate methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.2e-09 Score=82.05 Aligned_cols=94 Identities=16% Similarity=0.129 Sum_probs=72.2
Q ss_pred CCCcEEEeCCCccHHHHHHHh-cCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCC
Q 038343 22 SNKSCFEVGSGVGLVGICLAH-VKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESG 100 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~-~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~ 100 (191)
+-.+|.|||||+|.....+++ .....++++|.|++|++.++... .+.++...|...-.
T Consensus 30 ~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rl------------------p~~~f~~aDl~~w~--- 88 (257)
T COG4106 30 RPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRL------------------PDATFEEADLRTWK--- 88 (257)
T ss_pred ccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhC------------------CCCceecccHhhcC---
Confidence 456899999999977765555 55569999999999998885432 22344444432221
Q ss_pred CCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCC
Q 038343 101 LSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKS 137 (191)
Q Consensus 101 ~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~ 137 (191)
+..+.|+|+++-++++.+++..++..+-..|.|||-
T Consensus 89 -p~~~~dllfaNAvlqWlpdH~~ll~rL~~~L~Pgg~ 124 (257)
T COG4106 89 -PEQPTDLLFANAVLQWLPDHPELLPRLVSQLAPGGV 124 (257)
T ss_pred -CCCccchhhhhhhhhhccccHHHHHHHHHhhCCCce
Confidence 235799999999999999999999999999999973
|
|
| >COG1092 Predicted SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.1e-09 Score=90.29 Aligned_cols=106 Identities=20% Similarity=0.068 Sum_probs=79.4
Q ss_pred CCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcC-
Q 038343 21 FSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASES- 99 (191)
Q Consensus 21 ~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~- 99 (191)
..|++||++.|-||..|+.++..|+++||.+|.|..+|+.+++|++.|++.. .++.+...|.-+....
T Consensus 216 ~~GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~~-----------~~~~~i~~Dvf~~l~~~ 284 (393)
T COG1092 216 AAGKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLDG-----------DRHRFIVGDVFKWLRKA 284 (393)
T ss_pred ccCCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCCCc-----------cceeeehhhHHHHHHHH
Confidence 3589999999999999999999999999999999999999999999999763 2344444442221111
Q ss_pred CCCCCCCCEEEEcccccC---------CCChHHHHHHHHHHhccCCC
Q 038343 100 GLSAFVPEIILGADILYD---------RSCFPDLVRILAILLNRRKS 137 (191)
Q Consensus 100 ~~~~~~fDvIi~~d~ly~---------~~~~~~ll~~l~~ll~~~g~ 137 (191)
.-...+||+||.=.+=|. ..++..++....++|+|+|.
T Consensus 285 ~~~g~~fDlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~ 331 (393)
T COG1092 285 ERRGEKFDLIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGT 331 (393)
T ss_pred HhcCCcccEEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCE
Confidence 112348999998333331 13577888899999999973
|
|
| >PHA03411 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=3.5e-09 Score=83.13 Aligned_cols=98 Identities=8% Similarity=0.055 Sum_probs=68.1
Q ss_pred CCcEEEeCCCccHHHHHHHhcC-CCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCCC
Q 038343 23 NKSCFEVGSGVGLVGICLAHVK-ASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESGL 101 (191)
Q Consensus 23 ~~~VLElG~GtG~~~~~la~~g-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~~ 101 (191)
..+|||+|||+|.+++.+++.. ..+|+++|+++.+++.+++|.. ++.+...|..+..
T Consensus 65 ~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~~------------------~v~~v~~D~~e~~---- 122 (279)
T PHA03411 65 TGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLP------------------EAEWITSDVFEFE---- 122 (279)
T ss_pred CCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCc------------------CCEEEECchhhhc----
Confidence 4589999999999988776642 3589999999999999887631 1334444433221
Q ss_pred CCCCCCEEEEcccccCCCC--------------------hHHHHHHHHHHhccCCCCcccc
Q 038343 102 SAFVPEIILGADILYDRSC--------------------FPDLVRILAILLNRRKSVSSSR 142 (191)
Q Consensus 102 ~~~~fDvIi~~d~ly~~~~--------------------~~~ll~~l~~ll~~~g~~~~~~ 142 (191)
...+||+|+++..+++... +..+++....+|+|+|....++
T Consensus 123 ~~~kFDlIIsNPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~y 183 (279)
T PHA03411 123 SNEKFDVVISNPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAY 183 (279)
T ss_pred ccCCCcEEEEcCCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEE
Confidence 2357999999888875321 3566677777888887555443
|
|
| >PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=3.8e-09 Score=86.95 Aligned_cols=105 Identities=13% Similarity=0.008 Sum_probs=78.6
Q ss_pred CCCcEEEeCCCccHHHHHHHhcCC-CeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCC
Q 038343 22 SNKSCFEVGSGVGLVGICLAHVKA-SKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESG 100 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~g~-~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~ 100 (191)
.+..+||||||+|...+.+|+... ..++++|+++.++..+.+++..+++. ++.+...|..... ..
T Consensus 122 ~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~-------------NV~~i~~DA~~ll-~~ 187 (390)
T PRK14121 122 QEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLK-------------NLLIINYDARLLL-EL 187 (390)
T ss_pred CCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCC-------------cEEEEECCHHHhh-hh
Confidence 356899999999999998887643 48999999999999999999887754 4777777754332 22
Q ss_pred CCCCCCCEEEEcccccCCCC------hHHHHHHHHHHhccCCCCcc
Q 038343 101 LSAFVPEIILGADILYDRSC------FPDLVRILAILLNRRKSVSS 140 (191)
Q Consensus 101 ~~~~~fDvIi~~d~ly~~~~------~~~ll~~l~~ll~~~g~~~~ 140 (191)
++++++|.|+..-...++.. .+.+++.+.++|+|||....
T Consensus 188 ~~~~s~D~I~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l 233 (390)
T PRK14121 188 LPSNSVEKIFVHFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLEL 233 (390)
T ss_pred CCCCceeEEEEeCCCCccccchhhccHHHHHHHHHHHcCCCcEEEE
Confidence 45678999987532222211 26899999999999986553
|
|
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=5.9e-09 Score=82.66 Aligned_cols=110 Identities=8% Similarity=0.000 Sum_probs=72.1
Q ss_pred CCCCCcEEEeCCCccHHHHHHHhc-C-CCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCC
Q 038343 20 IFSNKSCFEVGSGVGLVGICLAHV-K-ASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESAS 97 (191)
Q Consensus 20 ~~~~~~VLElG~GtG~~~~~la~~-g-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~ 97 (191)
..++.+|||||||+|..+..++.. + ...|+++|+++.+++.+...++.. .++.....|.....
T Consensus 130 IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r---------------~NI~~I~~Da~~p~ 194 (293)
T PTZ00146 130 IKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR---------------PNIVPIIEDARYPQ 194 (293)
T ss_pred cCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc---------------CCCEEEECCccChh
Confidence 457889999999999999988876 3 248999999988775555433221 12444444443221
Q ss_pred cCCCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCccccccCC
Q 038343 98 ESGLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVSSSRKESS 146 (191)
Q Consensus 98 ~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~~~~~~~~ 146 (191)
.-......+|+|++. + ..+.....++..++++|||+|...+...+.+
T Consensus 195 ~y~~~~~~vDvV~~D-v-a~pdq~~il~~na~r~LKpGG~~vI~ika~~ 241 (293)
T PTZ00146 195 KYRMLVPMVDVIFAD-V-AQPDQARIVALNAQYFLKNGGHFIISIKANC 241 (293)
T ss_pred hhhcccCCCCEEEEe-C-CCcchHHHHHHHHHHhccCCCEEEEEEeccc
Confidence 111122469999874 4 3455566777889999999998776444443
|
|
| >COG4122 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.00 E-value=2.9e-09 Score=81.20 Aligned_cols=100 Identities=16% Similarity=0.192 Sum_probs=79.1
Q ss_pred CCCcEEEeCCCccHHHHHHHhc-C-CCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEe-ecCCCCCc
Q 038343 22 SNKSCFEVGSGVGLVGICLAHV-K-ASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVH-LPWESASE 98 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~-g-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~-ldw~~~~~ 98 (191)
..++|||+|.+.|..++.++.. . ..+++.+|.+++..+.+++|++..+.. .++.... +|+-+...
T Consensus 59 ~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~------------~~i~~~~~gdal~~l~ 126 (219)
T COG4122 59 GPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVD------------DRIELLLGGDALDVLS 126 (219)
T ss_pred CCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCc------------ceEEEEecCcHHHHHH
Confidence 6779999999999999977763 3 348999999999999999999999876 4466555 46654433
Q ss_pred CCCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCC
Q 038343 99 SGLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKS 137 (191)
Q Consensus 99 ~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~ 137 (191)
. ...++||+|+. | .+....+..++.+.++|+|||-
T Consensus 127 ~-~~~~~fDliFI-D--adK~~yp~~le~~~~lLr~GGl 161 (219)
T COG4122 127 R-LLDGSFDLVFI-D--ADKADYPEYLERALPLLRPGGL 161 (219)
T ss_pred h-ccCCCccEEEE-e--CChhhCHHHHHHHHHHhCCCcE
Confidence 2 33578999986 2 2567788999999999999973
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=98.99 E-value=4.3e-09 Score=96.06 Aligned_cols=107 Identities=23% Similarity=0.172 Sum_probs=71.9
Q ss_pred cHHHHHHHHhhCCC-CCCCCcEEEeCCCccHHHHHHHhcC-CCeEEEEcCChHHHHHHHHHHHHhcCCCCccc--ccc-c
Q 038343 6 SSLLLSEFILSFPE-IFSNKSCFEVGSGVGLVGICLAHVK-ASKVTLTDGDHLTLANMRSNLELNQLSTDTSL--LES-Y 80 (191)
Q Consensus 6 ~a~~L~~~l~~~~~-~~~~~~VLElG~GtG~~~~~la~~g-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~--~~~-~ 80 (191)
-+..|.+.+...+. .+++.+|||||||+|.+++.+++.. ..+|+++|+++.+++.+++|++.|++...... ... .
T Consensus 101 eTE~lve~L~~~~~~~~~~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~ 180 (1082)
T PLN02672 101 WSFTFYEGLNRHPDSIFRDKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGK 180 (1082)
T ss_pred hHHHHHHHHHhcccccCCCCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccc
Confidence 35666776544432 2456799999999999999888754 35999999999999999999999865310000 000 0
Q ss_pred CCCCeeEEEeecCCCCCcCCCCCCCCCEEEEccc
Q 038343 81 EDPNVVQCVHLPWESASESGLSAFVPEIILGADI 114 (191)
Q Consensus 81 ~~~~~i~~~~ldw~~~~~~~~~~~~fDvIi~~d~ 114 (191)
....++.+...||.+.... ...+||+||++..
T Consensus 181 ~l~~rV~f~~sDl~~~~~~--~~~~fDlIVSNPP 212 (1082)
T PLN02672 181 TLLDRVEFYESDLLGYCRD--NNIELDRIVGCIP 212 (1082)
T ss_pred cccccEEEEECchhhhccc--cCCceEEEEECCC
Confidence 0113588888888654311 1136999998654
|
|
| >PRK11727 23S rRNA mA1618 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=3e-09 Score=85.78 Aligned_cols=86 Identities=12% Similarity=0.035 Sum_probs=58.9
Q ss_pred CCCcEEEeCCCccHHHHHHHh-cCCCeEEEEcCChHHHHHHHHHHHHh-cCCCCcccccccCCCCeeEEEee-cCCCCCc
Q 038343 22 SNKSCFEVGSGVGLVGICLAH-VKASKVTLTDGDHLTLANMRSNLELN-QLSTDTSLLESYEDPNVVQCVHL-PWESASE 98 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~-~g~~~v~~tD~~~~~l~~~~~n~~~n-~~~~~~~~~~~~~~~~~i~~~~l-dw~~~~~ 98 (191)
++.+|||||||+|.+...++. ....+++++|+++.+++.+++|++.| ++. .++.+... +-.....
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~------------~~I~~~~~~~~~~i~~ 181 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLN------------GAIRLRLQKDSKAIFK 181 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCc------------CcEEEEEccchhhhhh
Confidence 356899999999966665544 33348999999999999999999999 655 34544321 1111111
Q ss_pred CC-CCCCCCCEEEEcccccCCC
Q 038343 99 SG-LSAFVPEIILGADILYDRS 119 (191)
Q Consensus 99 ~~-~~~~~fDvIi~~d~ly~~~ 119 (191)
.. ....+||+|+|+..+|...
T Consensus 182 ~i~~~~~~fDlivcNPPf~~s~ 203 (321)
T PRK11727 182 GIIHKNERFDATLCNPPFHASA 203 (321)
T ss_pred cccccCCceEEEEeCCCCcCcc
Confidence 00 1245899999998887554
|
|
| >PRK13255 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.98 E-value=4.7e-09 Score=80.60 Aligned_cols=126 Identities=13% Similarity=0.021 Sum_probs=81.3
Q ss_pred HHHHHHHhhCCCCCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccc--cccCCCCe
Q 038343 8 LLLSEFILSFPEIFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLL--ESYEDPNV 85 (191)
Q Consensus 8 ~~L~~~l~~~~~~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~--~~~~~~~~ 85 (191)
..|.+++.+.. ..++.+||++|||.|.-++++|..|. +|+++|+++.+++.+.. .+++....... .......+
T Consensus 24 ~~L~~~~~~~~-~~~~~rvL~~gCG~G~da~~LA~~G~-~V~avD~s~~Ai~~~~~---~~~l~~~~~~~~~~~~~~~~~ 98 (218)
T PRK13255 24 PLLQKYWPALA-LPAGSRVLVPLCGKSLDMLWLAEQGH-EVLGVELSELAVEQFFA---ENGLTPQTRQSGEFEHYQAGE 98 (218)
T ss_pred HHHHHHHHhhC-CCCCCeEEEeCCCChHhHHHHHhCCC-eEEEEccCHHHHHHHHH---HcCCCccccccccccccccCc
Confidence 34556654321 12467999999999999999999998 89999999999987632 33322110000 00001235
Q ss_pred eEEEeecCCCCCcCCCCCCCCCEEEEcccccCC--CChHHHHHHHHHHhccCCCCcc
Q 038343 86 VQCVHLPWESASESGLSAFVPEIILGADILYDR--SCFPDLVRILAILLNRRKSVSS 140 (191)
Q Consensus 86 i~~~~ldw~~~~~~~~~~~~fDvIi~~d~ly~~--~~~~~ll~~l~~ll~~~g~~~~ 140 (191)
+.+...|..+.... ....||.|+-.-++.+. +.....++.+.++|+|||....
T Consensus 99 v~~~~~D~~~l~~~--~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l 153 (218)
T PRK13255 99 ITIYCGDFFALTAA--DLADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLL 153 (218)
T ss_pred eEEEECcccCCCcc--cCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEE
Confidence 66666665543221 12479999977666543 4567889999999999986443
|
|
| >PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2 | Back alignment and domain information |
|---|
Probab=98.98 E-value=3.2e-09 Score=87.08 Aligned_cols=64 Identities=22% Similarity=0.249 Sum_probs=48.8
Q ss_pred cHHHHHHHHhhCCCCCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCC
Q 038343 6 SSLLLSEFILSFPEIFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLS 71 (191)
Q Consensus 6 ~a~~L~~~l~~~~~~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~ 71 (191)
....|.+++.......++ +||||.||+|.+|+.+|.... +|+++|.++.+++.+++|++.|++.
T Consensus 181 ~~~~l~~~~~~~l~~~~~-~vlDlycG~G~fsl~la~~~~-~V~gvE~~~~av~~A~~Na~~N~i~ 244 (352)
T PF05958_consen 181 QNEKLYEQALEWLDLSKG-DVLDLYCGVGTFSLPLAKKAK-KVIGVEIVEEAVEDARENAKLNGID 244 (352)
T ss_dssp HHHHHHHHHHHHCTT-TT-EEEEES-TTTCCHHHHHCCSS-EEEEEES-HHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHHHhhcCCC-cEEEEeecCCHHHHHHHhhCC-eEEEeeCCHHHHHHHHHHHHHcCCC
Confidence 345566666554443344 799999999999999999854 9999999999999999999999975
|
1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B. |
| >PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase [] | Back alignment and domain information |
|---|
Probab=98.96 E-value=4.5e-09 Score=88.54 Aligned_cols=102 Identities=16% Similarity=0.205 Sum_probs=76.2
Q ss_pred CCCcEEEeCCCccHHHHHHHhcC-----CCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCC
Q 038343 22 SNKSCFEVGSGVGLVGICLAHVK-----ASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESA 96 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~g-----~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~ 96 (191)
+++.||++|||+|.++..+++.+ +.+|++++.++.+...+++.++.|+.. ++|++...|..+.
T Consensus 186 ~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~------------~~V~vi~~d~r~v 253 (448)
T PF05185_consen 186 KDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWG------------DKVTVIHGDMREV 253 (448)
T ss_dssp TT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTT------------TTEEEEES-TTTS
T ss_pred cceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCC------------CeEEEEeCcccCC
Confidence 57899999999999988776664 569999999999998888877888764 5789999988766
Q ss_pred CcCCCCCCCCCEEEE--cccccCCCChHHHHHHHHHHhccCCCCc
Q 038343 97 SESGLSAFVPEIILG--ADILYDRSCFPDLVRILAILLNRRKSVS 139 (191)
Q Consensus 97 ~~~~~~~~~fDvIi~--~d~ly~~~~~~~ll~~l~~ll~~~g~~~ 139 (191)
... .+.|+||+ .+.+-+.+.....+...+++|+|+|...
T Consensus 254 ~lp----ekvDIIVSElLGsfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 254 ELP----EKVDIIVSELLGSFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp CHS----S-EEEEEE---BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred CCC----CceeEEEEeccCCccccccCHHHHHHHHhhcCCCCEEe
Confidence 432 38999997 2233344567778899999999996443
|
These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B .... |
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=4.9e-09 Score=73.86 Aligned_cols=99 Identities=17% Similarity=0.080 Sum_probs=68.6
Q ss_pred HHHHHHhhCCCCCCCCcEEEeCCCccH-HHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeE
Q 038343 9 LLSEFILSFPEIFSNKSCFEVGSGVGL-VGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQ 87 (191)
Q Consensus 9 ~L~~~l~~~~~~~~~~~VLElG~GtG~-~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~ 87 (191)
.+++|+.++....++++|||+|||+|. ++..+++.|. .|+++|+++.+++.++++ . +.
T Consensus 3 ~i~~~l~~~~~~~~~~kileIG~GfG~~vA~~L~~~G~-~ViaIDi~~~aV~~a~~~----~----------------~~ 61 (134)
T PRK04148 3 TIAEFIAENYEKGKNKKIVELGIGFYFKVAKKLKESGF-DVIVIDINEKAVEKAKKL----G----------------LN 61 (134)
T ss_pred HHHHHHHHhcccccCCEEEEEEecCCHHHHHHHHHCCC-EEEEEECCHHHHHHHHHh----C----------------Ce
Confidence 467787776554567899999999995 8989999987 999999999988777654 2 34
Q ss_pred EEeecCCCCCcCCCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCC
Q 038343 88 CVHLPWESASESGLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRK 136 (191)
Q Consensus 88 ~~~ldw~~~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g 136 (191)
+...|+.++..+.. ..+|+|. ...-...+...+.++-+.-+
T Consensus 62 ~v~dDlf~p~~~~y--~~a~liy------sirpp~el~~~~~~la~~~~ 102 (134)
T PRK04148 62 AFVDDLFNPNLEIY--KNAKLIY------SIRPPRDLQPFILELAKKIN 102 (134)
T ss_pred EEECcCCCCCHHHH--hcCCEEE------EeCCCHHHHHHHHHHHHHcC
Confidence 56677665532211 2355554 44456666666666666554
|
|
| >TIGR03438 probable methyltransferase | Back alignment and domain information |
|---|
Probab=98.95 E-value=8.9e-09 Score=82.82 Aligned_cols=107 Identities=12% Similarity=0.002 Sum_probs=71.0
Q ss_pred CCCcEEEeCCCccHHHHHHHhcC--CCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCc-
Q 038343 22 SNKSCFEVGSGVGLVGICLAHVK--ASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASE- 98 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~g--~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~- 98 (191)
++.+|||||||+|..+..+++.. ..+|+++|+|++||+.+++++...... .++.....|..+...
T Consensus 63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~------------~~v~~i~gD~~~~~~~ 130 (301)
T TIGR03438 63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQ------------LEVHGICADFTQPLAL 130 (301)
T ss_pred CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCC------------ceEEEEEEcccchhhh
Confidence 45789999999998888666553 248999999999999999887654311 235555666654211
Q ss_pred -CCCCCCCCCEEEEcccccCCC--ChHHHHHHHHHHhccCCCCcc
Q 038343 99 -SGLSAFVPEIILGADILYDRS--CFPDLVRILAILLNRRKSVSS 140 (191)
Q Consensus 99 -~~~~~~~fDvIi~~d~ly~~~--~~~~ll~~l~~ll~~~g~~~~ 140 (191)
.........+++....+++.. ....+++.+.+.|+|||....
T Consensus 131 ~~~~~~~~~~~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~li 175 (301)
T TIGR03438 131 PPEPAAGRRLGFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLI 175 (301)
T ss_pred hcccccCCeEEEEecccccCCCHHHHHHHHHHHHHhcCCCCEEEE
Confidence 111111233444445666543 466789999999999986543
|
This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases |
| >smart00650 rADc Ribosomal RNA adenine dimethylases | Back alignment and domain information |
|---|
Probab=98.94 E-value=7.1e-09 Score=76.48 Aligned_cols=81 Identities=17% Similarity=0.266 Sum_probs=59.6
Q ss_pred CCCCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCC
Q 038343 18 PEIFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESAS 97 (191)
Q Consensus 18 ~~~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~ 97 (191)
....++.+|||+|||+|.++..+++.+ .+|+++|+++.+++.+++++... .++++...|..+..
T Consensus 9 ~~~~~~~~vLEiG~G~G~lt~~l~~~~-~~v~~vE~~~~~~~~~~~~~~~~---------------~~v~ii~~D~~~~~ 72 (169)
T smart00650 9 ANLRPGDTVLEIGPGKGALTEELLERA-ARVTAIEIDPRLAPRLREKFAAA---------------DNLTVIHGDALKFD 72 (169)
T ss_pred cCCCCcCEEEEECCCccHHHHHHHhcC-CeEEEEECCHHHHHHHHHHhccC---------------CCEEEEECchhcCC
Confidence 334466799999999999999888885 48999999999999999887431 24666676665442
Q ss_pred cCCCCCCCCCEEEEcccccCC
Q 038343 98 ESGLSAFVPEIILGADILYDR 118 (191)
Q Consensus 98 ~~~~~~~~fDvIi~~d~ly~~ 118 (191)
..+.+||.|+++ ..|+.
T Consensus 73 ---~~~~~~d~vi~n-~Py~~ 89 (169)
T smart00650 73 ---LPKLQPYKVVGN-LPYNI 89 (169)
T ss_pred ---ccccCCCEEEEC-CCccc
Confidence 223368999874 55654
|
|
| >PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.2e-09 Score=86.64 Aligned_cols=105 Identities=16% Similarity=0.062 Sum_probs=74.6
Q ss_pred CCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCCC
Q 038343 22 SNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESGL 101 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~~ 101 (191)
++++||++.|-||..++.++.-|+.+|+.+|.|..+++.+++|+..|++.. .++.+...|.-+.....-
T Consensus 123 ~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~~-----------~~~~~~~~Dvf~~l~~~~ 191 (286)
T PF10672_consen 123 KGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLDL-----------DRHRFIQGDVFKFLKRLK 191 (286)
T ss_dssp TTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-CC-----------TCEEEEES-HHHHHHHHH
T ss_pred CCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCc-----------cceEEEecCHHHHHHHHh
Confidence 688999999999999999999999899999999999999999999999753 346666655432211101
Q ss_pred CCCCCCEEEEcccccCC------CChHHHHHHHHHHhccCCC
Q 038343 102 SAFVPEIILGADILYDR------SCFPDLVRILAILLNRRKS 137 (191)
Q Consensus 102 ~~~~fDvIi~~d~ly~~------~~~~~ll~~l~~ll~~~g~ 137 (191)
..++||+||+-..-|.. .++..++..+.++|+|+|.
T Consensus 192 ~~~~fD~IIlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~ 233 (286)
T PF10672_consen 192 KGGRFDLIILDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGL 233 (286)
T ss_dssp HTT-EEEEEE--SSEESSTCEHHHHHHHHHHHHHHTEEEEEE
T ss_pred cCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCE
Confidence 23589999984333322 2466788888899999873
|
The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A. |
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=7.1e-09 Score=82.68 Aligned_cols=107 Identities=15% Similarity=0.014 Sum_probs=72.4
Q ss_pred CCCcEEEeCCCccHHHHHHHhc-CCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCC
Q 038343 22 SNKSCFEVGSGVGLVGICLAHV-KASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESG 100 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~-g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~ 100 (191)
+.++||+||||+|.++..+.+. +..+|+++|+++.+++.+++++........ ...++++...|.......
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~--------~d~rv~v~~~Da~~~l~~- 146 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAY--------DDPRVELVIGDGIKFVAE- 146 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccc--------cCCceEEEECchHHHHhh-
Confidence 4569999999999998877665 566999999999999999988754321100 013566666654322111
Q ss_pred CCCCCCCEEEEcccc--cCCC---ChHHHHHHHHHHhccCCCCc
Q 038343 101 LSAFVPEIILGADIL--YDRS---CFPDLVRILAILLNRRKSVS 139 (191)
Q Consensus 101 ~~~~~fDvIi~~d~l--y~~~---~~~~ll~~l~~ll~~~g~~~ 139 (191)
..++||+|++ |.. +.+. ....+++.+++.|+|+|...
T Consensus 147 -~~~~yDvIi~-D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv 188 (283)
T PRK00811 147 -TENSFDVIIV-DSTDPVGPAEGLFTKEFYENCKRALKEDGIFV 188 (283)
T ss_pred -CCCcccEEEE-CCCCCCCchhhhhHHHHHHHHHHhcCCCcEEE
Confidence 2358999997 321 1111 13677899999999998644
|
|
| >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.1e-08 Score=81.06 Aligned_cols=92 Identities=12% Similarity=0.052 Sum_probs=63.7
Q ss_pred CCCcEEEeCCCccHHHHHHHhcCC----CeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCC
Q 038343 22 SNKSCFEVGSGVGLVGICLAHVKA----SKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESAS 97 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~g~----~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~ 97 (191)
+..+|||+|||+|..+..+++... ..++++|+++.+++.++++. .++.+...|..+.
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~------------------~~~~~~~~d~~~l- 145 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY------------------PQVTFCVASSHRL- 145 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC------------------CCCeEEEeecccC-
Confidence 346899999999988887665421 27999999999999886542 1234444444332
Q ss_pred cCCCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCccc
Q 038343 98 ESGLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVSSS 141 (191)
Q Consensus 98 ~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~~~ 141 (191)
.+.+++||+|++.. .+ ..++.+.++|+|+|....+
T Consensus 146 --p~~~~sfD~I~~~~---~~----~~~~e~~rvLkpgG~li~~ 180 (272)
T PRK11088 146 --PFADQSLDAIIRIY---AP----CKAEELARVVKPGGIVITV 180 (272)
T ss_pred --CCcCCceeEEEEec---CC----CCHHHHHhhccCCCEEEEE
Confidence 23456899999743 22 2467889999999876554
|
|
| >PHA03412 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=7.6e-09 Score=79.56 Aligned_cols=93 Identities=6% Similarity=0.075 Sum_probs=65.1
Q ss_pred CCCcEEEeCCCccHHHHHHHhc----CCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCC
Q 038343 22 SNKSCFEVGSGVGLVGICLAHV----KASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESAS 97 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~----g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~ 97 (191)
.+.+|||+|||+|.+++.+++. ...+|+++|+++.+++.+++|+.. +.+...|.....
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~~------------------~~~~~~D~~~~~ 110 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVPE------------------ATWINADALTTE 110 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhccC------------------CEEEEcchhccc
Confidence 3669999999999999977763 234899999999999999977521 233444433221
Q ss_pred cCCCCCCCCCEEEEcccccCCC------------ChHHHHHHHHHHhccCC
Q 038343 98 ESGLSAFVPEIILGADILYDRS------------CFPDLVRILAILLNRRK 136 (191)
Q Consensus 98 ~~~~~~~~fDvIi~~d~ly~~~------------~~~~ll~~l~~ll~~~g 136 (191)
.+.+||+||++..++... ....++....+++++|+
T Consensus 111 ----~~~~FDlIIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~ 157 (241)
T PHA03412 111 ----FDTLFDMAISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGT 157 (241)
T ss_pred ----ccCCccEEEECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCE
Confidence 135899999988877321 14457777777776664
|
|
| >PLN02476 O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.90 E-value=7.5e-09 Score=81.80 Aligned_cols=102 Identities=20% Similarity=0.222 Sum_probs=77.0
Q ss_pred CCCCcEEEeCCCccHHHHHHHhc-C-CCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCc
Q 038343 21 FSNKSCFEVGSGVGLVGICLAHV-K-ASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASE 98 (191)
Q Consensus 21 ~~~~~VLElG~GtG~~~~~la~~-g-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~ 98 (191)
.+.++|||+|+|+|..++.++.. + ..+|+.+|.+++..+.+++|++..+.. .++++...+..+...
T Consensus 117 ~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~------------~~I~li~GdA~e~L~ 184 (278)
T PLN02476 117 LGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVS------------HKVNVKHGLAAESLK 184 (278)
T ss_pred cCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC------------CcEEEEEcCHHHHHH
Confidence 35679999999999999988763 2 237999999999999999999999875 467777766543221
Q ss_pred CC---CCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCC
Q 038343 99 SG---LSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKS 137 (191)
Q Consensus 99 ~~---~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~ 137 (191)
.. ...++||+|+. |. +.......++.+.++|++||-
T Consensus 185 ~l~~~~~~~~FD~VFI-Da--~K~~Y~~y~e~~l~lL~~GGv 223 (278)
T PLN02476 185 SMIQNGEGSSYDFAFV-DA--DKRMYQDYFELLLQLVRVGGV 223 (278)
T ss_pred HHHhcccCCCCCEEEE-CC--CHHHHHHHHHHHHHhcCCCcE
Confidence 10 11357999987 32 345678889999999999974
|
|
| >KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.90 E-value=5.7e-09 Score=73.73 Aligned_cols=86 Identities=16% Similarity=0.094 Sum_probs=65.9
Q ss_pred HhhCCCCCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecC
Q 038343 14 ILSFPEIFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPW 93 (191)
Q Consensus 14 l~~~~~~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw 93 (191)
+......++|+.++|||||+|.+++..+..++..|.++|+++++|+...+|++...++ +.+.+.+.
T Consensus 40 Ih~TygdiEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEvq--------------idlLqcdi 105 (185)
T KOG3420|consen 40 IHNTYGDIEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEVQ--------------IDLLQCDI 105 (185)
T ss_pred HHhhhccccCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhhh--------------hheeeeec
Confidence 3344456799999999999999998888888889999999999999999998877654 34444444
Q ss_pred CCCCcCCCCCCCCCEEEEccccc
Q 038343 94 ESASESGLSAFVPEIILGADILY 116 (191)
Q Consensus 94 ~~~~~~~~~~~~fDvIi~~d~ly 116 (191)
.+.. +..+.||..+.+..+-
T Consensus 106 ldle---~~~g~fDtaviNppFG 125 (185)
T KOG3420|consen 106 LDLE---LKGGIFDTAVINPPFG 125 (185)
T ss_pred cchh---ccCCeEeeEEecCCCC
Confidence 4332 2336799988866654
|
|
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=98.88 E-value=6.2e-08 Score=72.66 Aligned_cols=108 Identities=10% Similarity=0.094 Sum_probs=69.2
Q ss_pred HHHHHHhhCCCCCCCCcEEEeCCCccHHHHHHHhcC--CCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCee
Q 038343 9 LLSEFILSFPEIFSNKSCFEVGSGVGLVGICLAHVK--ASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVV 86 (191)
Q Consensus 9 ~L~~~l~~~~~~~~~~~VLElG~GtG~~~~~la~~g--~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i 86 (191)
.+.+.........++.+|||+|||+|..+..+++.. ..+|+++|+++.+ .. ..+
T Consensus 19 ~~~~~~~~~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----------~~-------------~~i 74 (188)
T TIGR00438 19 KLLQLNQKFKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----------PI-------------ENV 74 (188)
T ss_pred HHHHHHHHhcccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----------cC-------------CCc
Confidence 444444445555678899999999998888766642 3479999998743 11 124
Q ss_pred EEEeecCCCCCc-----CCCCCCCCCEEEEccccc-----CCC------ChHHHHHHHHHHhccCCCCcc
Q 038343 87 QCVHLPWESASE-----SGLSAFVPEIILGADILY-----DRS------CFPDLVRILAILLNRRKSVSS 140 (191)
Q Consensus 87 ~~~~ldw~~~~~-----~~~~~~~fDvIi~~d~ly-----~~~------~~~~ll~~l~~ll~~~g~~~~ 140 (191)
.+...|+.+... .....++||+|++.-..+ ... ..+.+++.+.++|+|+|....
T Consensus 75 ~~~~~d~~~~~~~~~l~~~~~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi 144 (188)
T TIGR00438 75 DFIRGDFTDEEVLNKIRERVGDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVV 144 (188)
T ss_pred eEEEeeCCChhHHHHHHHHhCCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEE
Confidence 555556544210 012345799999843221 111 136789999999999986554
|
|
| >PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=2.3e-08 Score=82.73 Aligned_cols=94 Identities=20% Similarity=0.156 Sum_probs=69.2
Q ss_pred CCcEEEeCCCccHHHHHHHh-cCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCCC
Q 038343 23 NKSCFEVGSGVGLVGICLAH-VKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESGL 101 (191)
Q Consensus 23 ~~~VLElG~GtG~~~~~la~-~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~~ 101 (191)
+.+|||++||+|..++.+++ .++.+|+++|+++.+++.+++|++.|++. .+.+...|.......
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~-------------~~~v~~~Da~~~l~~-- 122 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLE-------------NEKVFNKDANALLHE-- 122 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-------------ceEEEhhhHHHHHhh--
Confidence 45899999999999997765 45568999999999999999999999864 234555554322111
Q ss_pred CCCCCCEEEEcccccCCCChHHHHHHHHHHhccCC
Q 038343 102 SAFVPEIILGADILYDRSCFPDLVRILAILLNRRK 136 (191)
Q Consensus 102 ~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g 136 (191)
..+||+|+. |.+ ....+++...-+.++++|
T Consensus 123 -~~~fD~V~l-DP~---Gs~~~~l~~al~~~~~~g 152 (382)
T PRK04338 123 -ERKFDVVDI-DPF---GSPAPFLDSAIRSVKRGG 152 (382)
T ss_pred -cCCCCEEEE-CCC---CCcHHHHHHHHHHhcCCC
Confidence 246999998 653 445677777555677775
|
|
| >PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.87 E-value=1e-08 Score=78.12 Aligned_cols=106 Identities=17% Similarity=0.143 Sum_probs=71.2
Q ss_pred HHhhCCCCCCCCcEEEeCCCccHHHHHHHhc-CC-CeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEe
Q 038343 13 FILSFPEIFSNKSCFEVGSGVGLVGICLAHV-KA-SKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVH 90 (191)
Q Consensus 13 ~l~~~~~~~~~~~VLElG~GtG~~~~~la~~-g~-~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ 90 (191)
.+.+.....++.+|||+|||+|..+..++.+ |. .+|+.+|.++...+.+++|+...+.. ++.+..
T Consensus 63 ~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~-------------nv~~~~ 129 (209)
T PF01135_consen 63 RMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGID-------------NVEVVV 129 (209)
T ss_dssp HHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTH-------------SEEEEE
T ss_pred HHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccC-------------ceeEEE
Confidence 3334444668899999999999888888876 33 26999999999999999999988754 466666
Q ss_pred ecCCCCCcCCCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCcc
Q 038343 91 LPWESASESGLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVSS 140 (191)
Q Consensus 91 ldw~~~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~~ 140 (191)
.|-.... ....+||.|+..-.... +-..+.+.|++||....
T Consensus 130 gdg~~g~---~~~apfD~I~v~~a~~~------ip~~l~~qL~~gGrLV~ 170 (209)
T PF01135_consen 130 GDGSEGW---PEEAPFDRIIVTAAVPE------IPEALLEQLKPGGRLVA 170 (209)
T ss_dssp S-GGGTT---GGG-SEEEEEESSBBSS--------HHHHHTEEEEEEEEE
T ss_pred cchhhcc---ccCCCcCEEEEeeccch------HHHHHHHhcCCCcEEEE
Confidence 6632221 12357999998655432 22456677899986553
|
1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A .... |
| >KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.86 E-value=5.9e-08 Score=73.28 Aligned_cols=95 Identities=14% Similarity=0.079 Sum_probs=68.3
Q ss_pred CCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCCC
Q 038343 22 SNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESGL 101 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~~ 101 (191)
...-|||+|||+|+.+..+...|. .++++|+|+.||+.+.+. +..+ .+.-.|.+... .+
T Consensus 50 ~~~~iLDIGCGsGLSg~vL~~~Gh-~wiGvDiSpsML~~a~~~-e~eg-----------------dlil~DMG~Gl--pf 108 (270)
T KOG1541|consen 50 KSGLILDIGCGSGLSGSVLSDSGH-QWIGVDISPSMLEQAVER-ELEG-----------------DLILCDMGEGL--PF 108 (270)
T ss_pred CCcEEEEeccCCCcchheeccCCc-eEEeecCCHHHHHHHHHh-hhhc-----------------CeeeeecCCCC--CC
Confidence 345799999999999999999985 899999999999998751 2212 23456666443 35
Q ss_pred CCCCCCEEEEcccccCC---------C--ChHHHHHHHHHHhccCCC
Q 038343 102 SAFVPEIILGADILYDR---------S--CFPDLVRILAILLNRRKS 137 (191)
Q Consensus 102 ~~~~fDvIi~~d~ly~~---------~--~~~~ll~~l~~ll~~~g~ 137 (191)
..+.||-+|+-..+.+. + .+-.++.+|..+|+++++
T Consensus 109 rpGtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~r 155 (270)
T KOG1541|consen 109 RPGTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGAR 155 (270)
T ss_pred CCCccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCce
Confidence 67899998874444322 1 134457788888888864
|
|
| >TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase | Back alignment and domain information |
|---|
Probab=98.85 E-value=4.1e-08 Score=80.98 Aligned_cols=96 Identities=15% Similarity=0.061 Sum_probs=72.3
Q ss_pred CCcEEEeCCCccHHHHHHHhc--CCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCC
Q 038343 23 NKSCFEVGSGVGLVGICLAHV--KASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESG 100 (191)
Q Consensus 23 ~~~VLElG~GtG~~~~~la~~--g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~ 100 (191)
+.+|||+.||+|..|+.+++. |+++|++.|+++.+++.+++|++.|+.. ++.+...|.......
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~-------------~~~v~~~Da~~~l~~- 110 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVE-------------NIEVPNEDAANVLRY- 110 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-------------cEEEEchhHHHHHHH-
Confidence 358999999999999987775 6789999999999999999999999753 345555554332211
Q ss_pred CCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCC
Q 038343 101 LSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKS 137 (191)
Q Consensus 101 ~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~ 137 (191)
...+||+|.. |. |. ...+++....+.++++|-
T Consensus 111 -~~~~fDvIdl-DP-fG--s~~~fld~al~~~~~~gl 142 (374)
T TIGR00308 111 -RNRKFHVIDI-DP-FG--TPAPFVDSAIQASAERGL 142 (374)
T ss_pred -hCCCCCEEEe-CC-CC--CcHHHHHHHHHhcccCCE
Confidence 1246999987 77 42 345788888888887753
|
This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes. |
| >PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.7e-09 Score=81.05 Aligned_cols=101 Identities=16% Similarity=0.124 Sum_probs=75.8
Q ss_pred CCCCcEEEeCCCccHHHHHHHhc-C-CCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCc
Q 038343 21 FSNKSCFEVGSGVGLVGICLAHV-K-ASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASE 98 (191)
Q Consensus 21 ~~~~~VLElG~GtG~~~~~la~~-g-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~ 98 (191)
.+.++|||+|+++|..++.++.. + ..+|+.+|.+++..+.++++++..+.. .++++...+..+...
T Consensus 44 ~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~------------~~I~~~~gda~~~l~ 111 (205)
T PF01596_consen 44 TRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLD------------DRIEVIEGDALEVLP 111 (205)
T ss_dssp HT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGG------------GGEEEEES-HHHHHH
T ss_pred cCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCC------------CcEEEEEeccHhhHH
Confidence 35669999999999999988863 2 249999999999999999999998865 467777776543211
Q ss_pred C---CCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCC
Q 038343 99 S---GLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRK 136 (191)
Q Consensus 99 ~---~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g 136 (191)
. ....++||+|+. |. ........++.+.++|++||
T Consensus 112 ~l~~~~~~~~fD~VFi-Da--~K~~y~~y~~~~~~ll~~gg 149 (205)
T PF01596_consen 112 ELANDGEEGQFDFVFI-DA--DKRNYLEYFEKALPLLRPGG 149 (205)
T ss_dssp HHHHTTTTTSEEEEEE-ES--TGGGHHHHHHHHHHHEEEEE
T ss_pred HHHhccCCCceeEEEE-cc--cccchhhHHHHHhhhccCCe
Confidence 1 111357999987 32 45667788888999999996
|
The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A .... |
| >TIGR00417 speE spermidine synthase | Back alignment and domain information |
|---|
Probab=98.82 E-value=4.2e-08 Score=77.77 Aligned_cols=108 Identities=18% Similarity=0.028 Sum_probs=69.9
Q ss_pred CCcEEEeCCCccHHHHHHHhcC-CCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCCC
Q 038343 23 NKSCFEVGSGVGLVGICLAHVK-ASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESGL 101 (191)
Q Consensus 23 ~~~VLElG~GtG~~~~~la~~g-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~~ 101 (191)
.++||+||||+|.++..+.+.. ..+|+++|+++.+++.+++++........ ..++++...|...... .
T Consensus 73 p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~---------~~~v~i~~~D~~~~l~--~ 141 (270)
T TIGR00417 73 PKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYD---------DPRVDLQIDDGFKFLA--D 141 (270)
T ss_pred CCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhccccc---------CCceEEEECchHHHHH--h
Confidence 4599999999998887666654 56899999999999999988754321110 1234444433211100 0
Q ss_pred CCCCCCEEEEccc--ccCCCC--hHHHHHHHHHHhccCCCCccc
Q 038343 102 SAFVPEIILGADI--LYDRSC--FPDLVRILAILLNRRKSVSSS 141 (191)
Q Consensus 102 ~~~~fDvIi~~d~--ly~~~~--~~~ll~~l~~ll~~~g~~~~~ 141 (191)
..++||+|++.-. ...... ...+++.++++|+|+|.....
T Consensus 142 ~~~~yDvIi~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 142 TENTFDVIIVDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQ 185 (270)
T ss_pred CCCCccEEEEeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEc
Confidence 1358999997322 111111 467789999999999875544
|
the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. |
| >PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA [] | Back alignment and domain information |
|---|
Probab=98.81 E-value=8.2e-08 Score=74.79 Aligned_cols=112 Identities=14% Similarity=0.019 Sum_probs=78.2
Q ss_pred hCCCCCCCCcEEEeCCCccHHHHHHHhc-CC-CeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecC
Q 038343 16 SFPEIFSNKSCFEVGSGVGLVGICLAHV-KA-SKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPW 93 (191)
Q Consensus 16 ~~~~~~~~~~VLElG~GtG~~~~~la~~-g~-~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw 93 (191)
...+..+|.+|||-|.|+|.++..+++. +. .+|+..|..++..+.+++|++.+++. .++.+..-|.
T Consensus 34 ~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~------------~~v~~~~~Dv 101 (247)
T PF08704_consen 34 MRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLD------------DNVTVHHRDV 101 (247)
T ss_dssp HHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCC------------TTEEEEES-G
T ss_pred HHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCC------------CCceeEecce
Confidence 3445668999999999999999988863 32 49999999999999999999999875 4677888777
Q ss_pred CCCCcCCCCCCCCCEEEEcccccCCCChHHHHHHHHHHh-ccCCCCccccccCC
Q 038343 94 ESASESGLSAFVPEIILGADILYDRSCFPDLVRILAILL-NRRKSVSSSRKESS 146 (191)
Q Consensus 94 ~~~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll-~~~g~~~~~~~~~~ 146 (191)
.+.......+..+|.|+. +.+.+...+..+.+.| ++||..+ .++|+
T Consensus 102 ~~~g~~~~~~~~~DavfL-----Dlp~Pw~~i~~~~~~L~~~gG~i~--~fsP~ 148 (247)
T PF08704_consen 102 CEEGFDEELESDFDAVFL-----DLPDPWEAIPHAKRALKKPGGRIC--CFSPC 148 (247)
T ss_dssp GCG--STT-TTSEEEEEE-----ESSSGGGGHHHHHHHE-EEEEEEE--EEESS
T ss_pred ecccccccccCcccEEEE-----eCCCHHHHHHHHHHHHhcCCceEE--EECCC
Confidence 432111111357898776 6677888899999999 7776433 33454
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A. |
| >PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=4.5e-08 Score=77.09 Aligned_cols=86 Identities=16% Similarity=0.081 Sum_probs=63.1
Q ss_pred HHHHHhhCCCCCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEE
Q 038343 10 LSEFILSFPEIFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCV 89 (191)
Q Consensus 10 L~~~l~~~~~~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~ 89 (191)
+.+.+.+.....++.+|||+|||+|.++..+++.+. +|+++|+++.+++.+++++... .++.+.
T Consensus 17 ~~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~~~-~v~~vEid~~~~~~l~~~~~~~---------------~~v~ii 80 (258)
T PRK14896 17 VVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKRAK-KVYAIELDPRLAEFLRDDEIAA---------------GNVEII 80 (258)
T ss_pred HHHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHhCC-EEEEEECCHHHHHHHHHHhccC---------------CCEEEE
Confidence 334444444455778999999999999999888854 8999999999999998876431 246777
Q ss_pred eecCCCCCcCCCCCCCCCEEEEccccc
Q 038343 90 HLPWESASESGLSAFVPEIILGADILY 116 (191)
Q Consensus 90 ~ldw~~~~~~~~~~~~fDvIi~~d~ly 116 (191)
..|..+.. + ..||.|+++-..+
T Consensus 81 ~~D~~~~~---~--~~~d~Vv~NlPy~ 102 (258)
T PRK14896 81 EGDALKVD---L--PEFNKVVSNLPYQ 102 (258)
T ss_pred EeccccCC---c--hhceEEEEcCCcc
Confidence 77765432 1 2479999876544
|
|
| >KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.2e-07 Score=69.56 Aligned_cols=74 Identities=22% Similarity=0.258 Sum_probs=55.1
Q ss_pred CCcEEEeCCCccHHHHHHHhc-C-CCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCC
Q 038343 23 NKSCFEVGSGVGLVGICLAHV-K-ASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESG 100 (191)
Q Consensus 23 ~~~VLElG~GtG~~~~~la~~-g-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~ 100 (191)
.+-+||||||+|+++.++++. + ...+.+||+||.+++..++.++.|+.. +.+..-|..+.
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~--------------~~~V~tdl~~~---- 105 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVH--------------IDVVRTDLLSG---- 105 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCc--------------cceeehhHHhh----
Confidence 457999999999998877764 2 348999999999999999999998843 44455554332
Q ss_pred CCCCCCCEEEEccc
Q 038343 101 LSAFVPEIILGADI 114 (191)
Q Consensus 101 ~~~~~fDvIi~~d~ 114 (191)
+..++.|+++.+..
T Consensus 106 l~~~~VDvLvfNPP 119 (209)
T KOG3191|consen 106 LRNESVDVLVFNPP 119 (209)
T ss_pred hccCCccEEEECCC
Confidence 23367888887543
|
|
| >PTZ00338 dimethyladenosine transferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=5.2e-08 Score=77.99 Aligned_cols=89 Identities=16% Similarity=0.218 Sum_probs=65.2
Q ss_pred HHHhhCCCCCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEee
Q 038343 12 EFILSFPEIFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHL 91 (191)
Q Consensus 12 ~~l~~~~~~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~l 91 (191)
+.+.......++.+|||+|||+|.++..++..+. +|+++|+++.+++.+++++..++.. .++++...
T Consensus 26 ~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~~~-~V~avEiD~~li~~l~~~~~~~~~~------------~~v~ii~~ 92 (294)
T PTZ00338 26 DKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQLAK-KVIAIEIDPRMVAELKKRFQNSPLA------------SKLEVIEG 92 (294)
T ss_pred HHHHHhcCCCCcCEEEEecCchHHHHHHHHHhCC-cEEEEECCHHHHHHHHHHHHhcCCC------------CcEEEEEC
Confidence 3444444455778999999999999998888754 8999999999999999998765532 35777777
Q ss_pred cCCCCCcCCCCCCCCCEEEEcccccCCC
Q 038343 92 PWESASESGLSAFVPEIILGADILYDRS 119 (191)
Q Consensus 92 dw~~~~~~~~~~~~fDvIi~~d~ly~~~ 119 (191)
|+.+.. + ..||+|+++ .-|+..
T Consensus 93 Dal~~~---~--~~~d~VvaN-lPY~Is 114 (294)
T PTZ00338 93 DALKTE---F--PYFDVCVAN-VPYQIS 114 (294)
T ss_pred CHhhhc---c--cccCEEEec-CCcccC
Confidence 765432 1 358988874 555543
|
|
| >PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.8e-08 Score=76.19 Aligned_cols=96 Identities=14% Similarity=0.131 Sum_probs=69.0
Q ss_pred CCCCcEEEeCCCccHHHHHHHhc-CCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcC
Q 038343 21 FSNKSCFEVGSGVGLVGICLAHV-KASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASES 99 (191)
Q Consensus 21 ~~~~~VLElG~GtG~~~~~la~~-g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~ 99 (191)
.++..|+|+.||.|..++.+++. .++.|++.|.+|.+++.+++|++.|+.. ..+.+...|..+...
T Consensus 100 ~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~------------~~i~~~~~D~~~~~~- 166 (200)
T PF02475_consen 100 KPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVE------------NRIEVINGDAREFLP- 166 (200)
T ss_dssp -TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-T------------TTEEEEES-GGG----
T ss_pred CcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCC------------CeEEEEcCCHHHhcC-
Confidence 46789999999999999988873 3458999999999999999999999876 467778888655432
Q ss_pred CCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCC
Q 038343 100 GLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRK 136 (191)
Q Consensus 100 ~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g 136 (191)
...||-|++.. +.....++.....+++++|
T Consensus 167 ---~~~~drvim~l----p~~~~~fl~~~~~~~~~~g 196 (200)
T PF02475_consen 167 ---EGKFDRVIMNL----PESSLEFLDAALSLLKEGG 196 (200)
T ss_dssp ---TT-EEEEEE------TSSGGGGHHHHHHHEEEEE
T ss_pred ---ccccCEEEECC----hHHHHHHHHHHHHHhcCCc
Confidence 46799999853 4445567888888888774
|
Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A. |
| >PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes | Back alignment and domain information |
|---|
Probab=98.78 E-value=6.8e-08 Score=74.87 Aligned_cols=92 Identities=18% Similarity=0.174 Sum_probs=71.8
Q ss_pred CCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCCC
Q 038343 22 SNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESGL 101 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~~ 101 (191)
...++||||+|.|-++..++..- ++|++|+.|+.|...+++ .+.. .+...+|.+.
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f-~~v~aTE~S~~Mr~rL~~----kg~~---------------vl~~~~w~~~----- 148 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLF-KEVYATEASPPMRWRLSK----KGFT---------------VLDIDDWQQT----- 148 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhc-ceEEeecCCHHHHHHHHh----CCCe---------------EEehhhhhcc-----
Confidence 45689999999999998888874 489999999988655542 3321 2234556543
Q ss_pred CCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCc
Q 038343 102 SAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVS 139 (191)
Q Consensus 102 ~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~ 139 (191)
+.+||+|.|-.++-.-..+..+|+.+++.|+|+|...
T Consensus 149 -~~~fDvIscLNvLDRc~~P~~LL~~i~~~l~p~G~li 185 (265)
T PF05219_consen 149 -DFKFDVISCLNVLDRCDRPLTLLRDIRRALKPNGRLI 185 (265)
T ss_pred -CCceEEEeehhhhhccCCHHHHHHHHHHHhCCCCEEE
Confidence 2479999999999999999999999999999976544
|
The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases. |
| >PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.77 E-value=4.9e-08 Score=77.45 Aligned_cols=88 Identities=16% Similarity=0.134 Sum_probs=61.8
Q ss_pred HHHHHhhCCCCCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEE
Q 038343 10 LSEFILSFPEIFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCV 89 (191)
Q Consensus 10 L~~~l~~~~~~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~ 89 (191)
+.+.+.+.....++.+|||+|||+|.++..+++.+. +|+++|+++.+++.+++++.. .++.+.
T Consensus 30 i~~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~~-~v~avE~d~~~~~~~~~~~~~----------------~~v~~i 92 (272)
T PRK00274 30 ILDKIVDAAGPQPGDNVLEIGPGLGALTEPLLERAA-KVTAVEIDRDLAPILAETFAE----------------DNLTII 92 (272)
T ss_pred HHHHHHHhcCCCCcCeEEEeCCCccHHHHHHHHhCC-cEEEEECCHHHHHHHHHhhcc----------------CceEEE
Confidence 334444444445677999999999999998888876 899999999999999876532 246777
Q ss_pred eecCCCCCcCCCCCCCCCEEEEcccccCC
Q 038343 90 HLPWESASESGLSAFVPEIILGADILYDR 118 (191)
Q Consensus 90 ~ldw~~~~~~~~~~~~fDvIi~~d~ly~~ 118 (191)
..|+.+.... +..+|.|+++-. |+.
T Consensus 93 ~~D~~~~~~~---~~~~~~vv~NlP-Y~i 117 (272)
T PRK00274 93 EGDALKVDLS---ELQPLKVVANLP-YNI 117 (272)
T ss_pred EChhhcCCHH---HcCcceEEEeCC-ccc
Confidence 7777654321 111578887644 544
|
|
| >PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.3e-07 Score=71.16 Aligned_cols=107 Identities=20% Similarity=0.187 Sum_probs=73.6
Q ss_pred cEEEeCCCccHHHHHHHhc-CCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCCCCC
Q 038343 25 SCFEVGSGVGLVGICLAHV-KASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESGLSA 103 (191)
Q Consensus 25 ~VLElG~GtG~~~~~la~~-g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~~~~ 103 (191)
+|||||||||.-+.++++. ..-...-+|.++..+..++..+...+..... ....+.+..-.|..........
T Consensus 28 ~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~-------~P~~lDv~~~~w~~~~~~~~~~ 100 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVR-------PPLALDVSAPPWPWELPAPLSP 100 (204)
T ss_pred eEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccC-------CCeEeecCCCCCccccccccCC
Confidence 6999999999888866664 3347888999988888888877776654211 1112223333232221111234
Q ss_pred CCCCEEEEcccccCC--CChHHHHHHHHHHhccCCCC
Q 038343 104 FVPEIILGADILYDR--SCFPDLVRILAILLNRRKSV 138 (191)
Q Consensus 104 ~~fDvIi~~d~ly~~--~~~~~ll~~l~~ll~~~g~~ 138 (191)
.+||.|++..++|-. ...+.+++...++|+++|..
T Consensus 101 ~~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L 137 (204)
T PF06080_consen 101 ESFDAIFCINMLHISPWSAVEGLFAGAARLLKPGGLL 137 (204)
T ss_pred CCcceeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEE
Confidence 689999999999944 56889999999999999753
|
The function of this family is unknown. |
| >KOG2361 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.73 E-value=2.4e-08 Score=76.27 Aligned_cols=101 Identities=20% Similarity=0.145 Sum_probs=72.3
Q ss_pred cEEEeCCCccHHHHHHHhcCC---CeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCC-cCC
Q 038343 25 SCFEVGSGVGLVGICLAHVKA---SKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESAS-ESG 100 (191)
Q Consensus 25 ~VLElG~GtG~~~~~la~~g~---~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~-~~~ 100 (191)
+|||+|||.|.+...+.+-.. -+|++.|.++.+++..+++...+.. ++.....|...+. ...
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~--------------~~~afv~Dlt~~~~~~~ 139 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDES--------------RVEAFVWDLTSPSLKEP 139 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccchh--------------hhcccceeccchhccCC
Confidence 799999999977775544322 2899999999999999988765542 2333333333322 233
Q ss_pred CCCCCCCEEEEccccc--CCCChHHHHHHHHHHhccCCCCc
Q 038343 101 LSAFVPEIILGADILY--DRSCFPDLVRILAILLNRRKSVS 139 (191)
Q Consensus 101 ~~~~~fDvIi~~d~ly--~~~~~~~ll~~l~~ll~~~g~~~ 139 (191)
...+++|+|++-=++- +++.....++.+.++|||||...
T Consensus 140 ~~~~svD~it~IFvLSAi~pek~~~a~~nl~~llKPGG~ll 180 (264)
T KOG2361|consen 140 PEEGSVDIITLIFVLSAIHPEKMQSVIKNLRTLLKPGGSLL 180 (264)
T ss_pred CCcCccceEEEEEEEeccChHHHHHHHHHHHHHhCCCcEEE
Confidence 4567899999866665 56778999999999999997533
|
|
| >PLN02366 spermidine synthase | Back alignment and domain information |
|---|
Probab=98.70 E-value=4.1e-07 Score=73.25 Aligned_cols=106 Identities=14% Similarity=0.010 Sum_probs=70.9
Q ss_pred CCCcEEEeCCCccHHHHHHHhcC-CCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCC
Q 038343 22 SNKSCFEVGSGVGLVGICLAHVK-ASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESG 100 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~g-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~ 100 (191)
+.++||++|||.|.+...+++.. ..+|+.+|+++.+++.+++.+....... ...++++...|-..... .
T Consensus 91 ~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~---------~dpRv~vi~~Da~~~l~-~ 160 (308)
T PLN02366 91 NPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGF---------DDPRVNLHIGDGVEFLK-N 160 (308)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhcccc---------CCCceEEEEChHHHHHh-h
Confidence 45799999999998888777763 4589999999999999998875422111 11456666665321111 1
Q ss_pred CCCCCCCEEEEcccccC--CC---ChHHHHHHHHHHhccCCCC
Q 038343 101 LSAFVPEIILGADILYD--RS---CFPDLVRILAILLNRRKSV 138 (191)
Q Consensus 101 ~~~~~fDvIi~~d~ly~--~~---~~~~ll~~l~~ll~~~g~~ 138 (191)
...++||+|++ |..-. +. ....+++.+++.|+|+|..
T Consensus 161 ~~~~~yDvIi~-D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvl 202 (308)
T PLN02366 161 APEGTYDAIIV-DSSDPVGPAQELFEKPFFESVARALRPGGVV 202 (308)
T ss_pred ccCCCCCEEEE-cCCCCCCchhhhhHHHHHHHHHHhcCCCcEE
Confidence 12357999997 43211 11 1346789999999999853
|
|
| >PLN02589 caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.1e-07 Score=74.23 Aligned_cols=101 Identities=13% Similarity=0.075 Sum_probs=75.6
Q ss_pred CCCcEEEeCCCccHHHHHHHhc-C-CCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcC
Q 038343 22 SNKSCFEVGSGVGLVGICLAHV-K-ASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASES 99 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~-g-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~ 99 (191)
+.++|||||+++|..++.++.. + ..+++.+|.+++..+.++++++..+.. .+|.+...+..+....
T Consensus 79 ~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~------------~~I~~~~G~a~e~L~~ 146 (247)
T PLN02589 79 NAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVA------------HKIDFREGPALPVLDQ 146 (247)
T ss_pred CCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCC------------CceEEEeccHHHHHHH
Confidence 4569999999999999987763 2 238999999999999999999988865 5677777765443221
Q ss_pred CC----CCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCC
Q 038343 100 GL----SAFVPEIILGADILYDRSCFPDLVRILAILLNRRKS 137 (191)
Q Consensus 100 ~~----~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~ 137 (191)
.. ..++||+|+. |. +.......++.+.++|++||-
T Consensus 147 l~~~~~~~~~fD~iFi-Da--dK~~Y~~y~~~~l~ll~~GGv 185 (247)
T PLN02589 147 MIEDGKYHGTFDFIFV-DA--DKDNYINYHKRLIDLVKVGGV 185 (247)
T ss_pred HHhccccCCcccEEEe-cC--CHHHhHHHHHHHHHhcCCCeE
Confidence 11 1258999987 32 355677778888899999973
|
|
| >COG2520 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.8e-07 Score=75.73 Aligned_cols=97 Identities=16% Similarity=0.156 Sum_probs=76.7
Q ss_pred CCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCCC
Q 038343 22 SNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESGL 101 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~~ 101 (191)
+|.+|||+.||.|-+++.+|+.|..+|+++|+||.+++.+++|+++|+.. ..+.....|-......
T Consensus 188 ~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~------------~~v~~i~gD~rev~~~-- 253 (341)
T COG2520 188 EGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVE------------GRVEPILGDAREVAPE-- 253 (341)
T ss_pred CCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCcc------------ceeeEEeccHHHhhhc--
Confidence 58899999999999999999998867999999999999999999999976 4566777775544321
Q ss_pred CCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCC
Q 038343 102 SAFVPEIILGADILYDRSCFPDLVRILAILLNRRKS 137 (191)
Q Consensus 102 ~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~ 137 (191)
.+.+|-|++.- +.....++....++++++|.
T Consensus 254 -~~~aDrIim~~----p~~a~~fl~~A~~~~k~~g~ 284 (341)
T COG2520 254 -LGVADRIIMGL----PKSAHEFLPLALELLKDGGI 284 (341)
T ss_pred -cccCCEEEeCC----CCcchhhHHHHHHHhhcCcE
Confidence 15799999863 33455667777777777653
|
|
| >PRK13256 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.60 E-value=5.3e-07 Score=69.38 Aligned_cols=131 Identities=7% Similarity=-0.034 Sum_probs=86.2
Q ss_pred HHHHHHHhhCCCCCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCccc--ccccCCCCe
Q 038343 8 LLLSEFILSFPEIFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSL--LESYEDPNV 85 (191)
Q Consensus 8 ~~L~~~l~~~~~~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~--~~~~~~~~~ 85 (191)
..|.+++..... .++.+||..|||.|.-..+++..|. +|+++|+++.+++.+.+ .|++...... .........
T Consensus 30 p~L~~~~~~l~~-~~~~rvLvPgCGkg~D~~~LA~~G~-~V~GvDlS~~Ai~~~~~---e~~~~~~~~~~~~~~~~~~~~ 104 (226)
T PRK13256 30 EFLVKHFSKLNI-NDSSVCLIPMCGCSIDMLFFLSKGV-KVIGIELSEKAVLSFFS---QNTINYEVIHGNDYKLYKGDD 104 (226)
T ss_pred HHHHHHHHhcCC-CCCCeEEEeCCCChHHHHHHHhCCC-cEEEEecCHHHHHHHHH---HcCCCcceecccccceeccCc
Confidence 345555544322 2567999999999999999999998 79999999999988754 2222110000 000011245
Q ss_pred eEEEeecCCCCCcCCCCCCCCCEEEEccccc--CCCChHHHHHHHHHHhccCCCCccccc
Q 038343 86 VQCVHLPWESASESGLSAFVPEIILGADILY--DRSCFPDLVRILAILLNRRKSVSSSRK 143 (191)
Q Consensus 86 i~~~~ldw~~~~~~~~~~~~fDvIi~~d~ly--~~~~~~~ll~~l~~ll~~~g~~~~~~~ 143 (191)
+.+...|+-+........++||+|+-.-++. .++......+.+.++|+|+|....++.
T Consensus 105 i~~~~gD~f~l~~~~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~ 164 (226)
T PRK13256 105 IEIYVADIFNLPKIANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVM 164 (226)
T ss_pred eEEEEccCcCCCccccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEE
Confidence 7777777665432111225799987544444 566788889999999999987776654
|
|
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=98.60 E-value=4.9e-07 Score=73.82 Aligned_cols=103 Identities=21% Similarity=0.163 Sum_probs=66.7
Q ss_pred CCCcEEEeCCCccHHHHHHHhcC-CCeEEEEcCChHHHHHHHHHHH---HhcCCCCcccccccCCCCeeEEEeecCCCCC
Q 038343 22 SNKSCFEVGSGVGLVGICLAHVK-ASKVTLTDGDHLTLANMRSNLE---LNQLSTDTSLLESYEDPNVVQCVHLPWESAS 97 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~g-~~~v~~tD~~~~~l~~~~~n~~---~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~ 97 (191)
..++||++|||+|.....+.+.. ..+|+++|+++++++.++.... .++... ...++++...|-.+..
T Consensus 150 ~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~---------~DpRV~vvi~Da~~fL 220 (374)
T PRK01581 150 DPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAF---------FDNRVNVHVCDAKEFL 220 (374)
T ss_pred CCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccC---------CCCceEEEECcHHHHH
Confidence 34699999999998777666653 4699999999999999985211 111110 0135666555433221
Q ss_pred cCCCCCCCCCEEEEcccccCCC-------ChHHHHHHHHHHhccCCC
Q 038343 98 ESGLSAFVPEIILGADILYDRS-------CFPDLVRILAILLNRRKS 137 (191)
Q Consensus 98 ~~~~~~~~fDvIi~~d~ly~~~-------~~~~ll~~l~~ll~~~g~ 137 (191)
.. ..++||+|++ |+ .++. .-..+++.+++.|+|+|-
T Consensus 221 ~~--~~~~YDVIIv-Dl-~DP~~~~~~~LyT~EFy~~~~~~LkPgGV 263 (374)
T PRK01581 221 SS--PSSLYDVIII-DF-PDPATELLSTLYTSELFARIATFLTEDGA 263 (374)
T ss_pred Hh--cCCCccEEEE-cC-CCccccchhhhhHHHHHHHHHHhcCCCcE
Confidence 11 2357999997 43 2221 125688999999999984
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.9e-07 Score=80.39 Aligned_cols=108 Identities=20% Similarity=0.118 Sum_probs=70.3
Q ss_pred CCCcEEEeCCCccHHHHHHHhcCC-CeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCC
Q 038343 22 SNKSCFEVGSGVGLVGICLAHVKA-SKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESG 100 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~g~-~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~ 100 (191)
+.++||++|||+|.....+.+.+. .+|+++|+|+++++.+++|...+...... -...++++...|-.+....
T Consensus 297 ~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~------~~dprv~vi~~Da~~~l~~- 369 (521)
T PRK03612 297 RPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGA------LDDPRVTVVNDDAFNWLRK- 369 (521)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccc------cCCCceEEEEChHHHHHHh-
Confidence 456999999999998887777654 69999999999999999853222111000 0013566665553321111
Q ss_pred CCCCCCCEEEEcccccCCC-------ChHHHHHHHHHHhccCCCCc
Q 038343 101 LSAFVPEIILGADILYDRS-------CFPDLVRILAILLNRRKSVS 139 (191)
Q Consensus 101 ~~~~~fDvIi~~d~ly~~~-------~~~~ll~~l~~ll~~~g~~~ 139 (191)
..++||+|++. .. ++. ..+.+++.+++.|+|+|...
T Consensus 370 -~~~~fDvIi~D-~~-~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv 412 (521)
T PRK03612 370 -LAEKFDVIIVD-LP-DPSNPALGKLYSVEFYRLLKRRLAPDGLLV 412 (521)
T ss_pred -CCCCCCEEEEe-CC-CCCCcchhccchHHHHHHHHHhcCCCeEEE
Confidence 23589999984 32 221 12458899999999998644
|
|
| >KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.58 E-value=4.5e-07 Score=76.09 Aligned_cols=65 Identities=20% Similarity=0.303 Sum_probs=58.5
Q ss_pred cHHHHHHHHhhCCCCCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCC
Q 038343 6 SSLLLSEFILSFPEIFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLS 71 (191)
Q Consensus 6 ~a~~L~~~l~~~~~~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~ 71 (191)
++.+|-.++..+...-.++.++|+.||||.+|+.+++. +++|+++++++.+++-|+.|++.|++.
T Consensus 367 ~aevLys~i~e~~~l~~~k~llDv~CGTG~iglala~~-~~~ViGvEi~~~aV~dA~~nA~~Ngis 431 (534)
T KOG2187|consen 367 AAEVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARG-VKRVIGVEISPDAVEDAEKNAQINGIS 431 (534)
T ss_pred HHHHHHHHHHHHhCCCCCcEEEEEeecCCceehhhhcc-ccceeeeecChhhcchhhhcchhcCcc
Confidence 46788888888877778899999999999999998877 569999999999999999999999987
|
|
| >PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.57 E-value=3e-07 Score=71.56 Aligned_cols=88 Identities=23% Similarity=0.255 Sum_probs=67.3
Q ss_pred CCCcEEEeCCCccHHHHHHHhcCC-CeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCC
Q 038343 22 SNKSCFEVGSGVGLVGICLAHVKA-SKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESG 100 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~g~-~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~ 100 (191)
+..+|||||+|+|..+..+++..+ -+++..|. |++++.+++ . .++.+...|+.+.
T Consensus 100 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~-------~------------~rv~~~~gd~f~~---- 155 (241)
T PF00891_consen 100 GFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE-------A------------DRVEFVPGDFFDP---- 155 (241)
T ss_dssp TSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH-------T------------TTEEEEES-TTTC----
T ss_pred CccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc-------c------------cccccccccHHhh----
Confidence 456899999999999886666533 38999999 889888876 1 4688999998733
Q ss_pred CCCCCCCEEEEcccccCCC--ChHHHHHHHHHHhccC
Q 038343 101 LSAFVPEIILGADILYDRS--CFPDLVRILAILLNRR 135 (191)
Q Consensus 101 ~~~~~fDvIi~~d~ly~~~--~~~~ll~~l~~ll~~~ 135 (191)
++ . +|+|+...++|+.. ....+|+.++..|+|+
T Consensus 156 ~P-~-~D~~~l~~vLh~~~d~~~~~iL~~~~~al~pg 190 (241)
T PF00891_consen 156 LP-V-ADVYLLRHVLHDWSDEDCVKILRNAAAALKPG 190 (241)
T ss_dssp CS-S-ESEEEEESSGGGS-HHHHHHHHHHHHHHSEEC
T ss_pred hc-c-ccceeeehhhhhcchHHHHHHHHHHHHHhCCC
Confidence 22 2 99999999998654 4667899999999998
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A .... |
| >PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes | Back alignment and domain information |
|---|
Probab=98.56 E-value=2.4e-07 Score=75.25 Aligned_cols=128 Identities=11% Similarity=0.046 Sum_probs=70.8
Q ss_pred cHHHHHHHHhhCCCCCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCe
Q 038343 6 SSLLLSEFILSFPEIFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNV 85 (191)
Q Consensus 6 ~a~~L~~~l~~~~~~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~ 85 (191)
-+..+..|+.......++.+|||||||-|.--.-....+...|+++|++...++.+++..+.......... ....-.
T Consensus 46 Ks~LI~~~~~~~~~~~~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~---~~~~f~ 122 (331)
T PF03291_consen 46 KSVLIQKYAKKVKQNRPGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQ---YRFDFI 122 (331)
T ss_dssp HHHHHHHHCHCCCCTTTT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HT---SEECCE
T ss_pred HHHHHHHHHHhhhccCCCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhcccccccc---ccccch
Confidence 34455555543333337789999999977544433445677999999999999999887733221100000 000011
Q ss_pred eEEEeecCCCCC-cCCCCC--CCCCEEEEcccccC----CCChHHHHHHHHHHhccCC
Q 038343 86 VQCVHLPWESAS-ESGLSA--FVPEIILGADILYD----RSCFPDLVRILAILLNRRK 136 (191)
Q Consensus 86 i~~~~ldw~~~~-~~~~~~--~~fDvIi~~d~ly~----~~~~~~ll~~l~~ll~~~g 136 (191)
..+...|-.... ...+.. .+||+|=+--.+|+ ......+++.+...|+|||
T Consensus 123 a~f~~~D~f~~~l~~~~~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG 180 (331)
T PF03291_consen 123 AEFIAADCFSESLREKLPPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGG 180 (331)
T ss_dssp EEEEESTTCCSHHHCTSSSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred hheeccccccchhhhhccccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCC
Confidence 222333322111 111232 48999998666664 3457778999999999997
|
The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A. |
| >COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.56 E-value=7.6e-07 Score=71.87 Aligned_cols=111 Identities=17% Similarity=0.164 Sum_probs=86.1
Q ss_pred HHHHHHhhCCCCCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEE
Q 038343 9 LLSEFILSFPEIFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQC 88 (191)
Q Consensus 9 ~L~~~l~~~~~~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~ 88 (191)
.||..+.+..+..+|..|||=-||||.+-+.+..+|+ +++++|++..|+.-++.|++..+++ ...+
T Consensus 184 ~lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl~G~-~viG~Did~~mv~gak~Nl~~y~i~-------------~~~~ 249 (347)
T COG1041 184 RLARAMVNLARVKRGELVLDPFCGTGGILIEAGLMGA-RVIGSDIDERMVRGAKINLEYYGIE-------------DYPV 249 (347)
T ss_pred HHHHHHHHHhccccCCEeecCcCCccHHHHhhhhcCc-eEeecchHHHHHhhhhhhhhhhCcC-------------ceeE
Confidence 5677777767777899999999999999999999998 9999999999999999999988754 1222
Q ss_pred Ee-ecCCCCCcCCCCCCCCCEEEEcccccCCCC----------hHHHHHHHHHHhccCCC
Q 038343 89 VH-LPWESASESGLSAFVPEIILGADILYDRSC----------FPDLVRILAILLNRRKS 137 (191)
Q Consensus 89 ~~-ldw~~~~~~~~~~~~fDvIi~~d~ly~~~~----------~~~ll~~l~~ll~~~g~ 137 (191)
.. +|....+ +.+.++|-|++ |.-|-... ...+++++.++|+++|.
T Consensus 250 ~~~~Da~~lp---l~~~~vdaIat-DPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~ 305 (347)
T COG1041 250 LKVLDATNLP---LRDNSVDAIAT-DPPYGRSTKIKGEGLDELYEEALESASEVLKPGGR 305 (347)
T ss_pred EEecccccCC---CCCCccceEEe-cCCCCcccccccccHHHHHHHHHHHHHHHhhcCcE
Confidence 22 2443332 44457999876 88884432 77889999999999763
|
|
| >PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ] | Back alignment and domain information |
|---|
Probab=98.52 E-value=1.8e-07 Score=68.31 Aligned_cols=76 Identities=16% Similarity=0.116 Sum_probs=54.9
Q ss_pred cEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCCCCCC
Q 038343 25 SCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESGLSAF 104 (191)
Q Consensus 25 ~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~~~~~ 104 (191)
.|+|+.||.|..++.+|+... +|+++|+++.-++.++.|++..+.. .++.+...||.+.........
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~~-~Viaidid~~~~~~a~hNa~vYGv~------------~~I~~i~gD~~~~~~~~~~~~ 68 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTFD-RVIAIDIDPERLECAKHNAEVYGVA------------DNIDFICGDFFELLKRLKSNK 68 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT--EEEEEES-HHHHHHHHHHHHHTT-G------------GGEEEEES-HHHHGGGB----
T ss_pred EEEEeccCcCHHHHHHHHhCC-eEEEEECCHHHHHHHHHHHHHcCCC------------CcEEEEeCCHHHHHhhccccc
Confidence 699999999999999999865 8999999999999999999999865 578999999876533211111
Q ss_pred CCCEEEEcc
Q 038343 105 VPEIILGAD 113 (191)
Q Consensus 105 ~fDvIi~~d 113 (191)
.+|+|+++.
T Consensus 69 ~~D~vFlSP 77 (163)
T PF09445_consen 69 IFDVVFLSP 77 (163)
T ss_dssp --SEEEE--
T ss_pred cccEEEECC
Confidence 289999754
|
Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A. |
| >COG3963 Phospholipid N-methyltransferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.4e-06 Score=63.21 Aligned_cols=124 Identities=13% Similarity=0.050 Sum_probs=84.9
Q ss_pred ccccHHHHHHHHhhCCCCCCCCcEEEeCCCccHHHHHHHhcCC--CeEEEEcCChHHHHHHHHHHHHhcCCCCccccccc
Q 038343 3 IWPSSLLLSEFILSFPEIFSNKSCFEVGSGVGLVGICLAHVKA--SKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESY 80 (191)
Q Consensus 3 ~W~~a~~L~~~l~~~~~~~~~~~VLElG~GtG~~~~~la~~g~--~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~ 80 (191)
+-|++-.|++-+...-....++.|||+|.|||++.-.+.+.|. ..+++++++++....+.+....
T Consensus 29 I~PsSs~lA~~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~------------- 95 (194)
T COG3963 29 ILPSSSILARKMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPG------------- 95 (194)
T ss_pred ecCCcHHHHHHHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCC-------------
Confidence 4467777888777655555788999999999999987777664 4899999999998877654322
Q ss_pred CCCCeeEEEeecCCCCC--cCCCCCCCCCEEEEcccccCCCC--hHHHHHHHHHHhccCCCCcccccc
Q 038343 81 EDPNVVQCVHLPWESAS--ESGLSAFVPEIILGADILYDRSC--FPDLVRILAILLNRRKSVSSSRKE 144 (191)
Q Consensus 81 ~~~~~i~~~~ldw~~~~--~~~~~~~~fDvIi~~d~ly~~~~--~~~ll~~l~~ll~~~g~~~~~~~~ 144 (191)
..+.+.|-.+.. ..+..+..||.|+++=.+-..+. --.+++.+...|..||....+.-.
T Consensus 96 -----~~ii~gda~~l~~~l~e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqftYg 158 (194)
T COG3963 96 -----VNIINGDAFDLRTTLGEHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFTYG 158 (194)
T ss_pred -----ccccccchhhHHHHHhhcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEEec
Confidence 122333322221 12234567999999877766554 445688888888888766554433
|
|
| >TIGR00755 ksgA dimethyladenosine transferase | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.1e-06 Score=69.10 Aligned_cols=85 Identities=16% Similarity=0.157 Sum_probs=58.8
Q ss_pred HHHHhhCCCCCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEe
Q 038343 11 SEFILSFPEIFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVH 90 (191)
Q Consensus 11 ~~~l~~~~~~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ 90 (191)
.+.+.+.....++.+|||+|||+|.++..+++.+. .|+++|.++.+++.++.+.... .++.+..
T Consensus 18 ~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~~-~v~~iE~d~~~~~~l~~~~~~~---------------~~v~v~~ 81 (253)
T TIGR00755 18 IQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRAK-KVTAIEIDPRLAEILRKLLSLY---------------ERLEVIE 81 (253)
T ss_pred HHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhCC-cEEEEECCHHHHHHHHHHhCcC---------------CcEEEEE
Confidence 33444444445678999999999999999998875 7999999999999998776321 2466666
Q ss_pred ecCCCCCcCCCCCCCCC---EEEEcccccC
Q 038343 91 LPWESASESGLSAFVPE---IILGADILYD 117 (191)
Q Consensus 91 ldw~~~~~~~~~~~~fD---vIi~~d~ly~ 117 (191)
.|..+... ..|| +|+++ .-|+
T Consensus 82 ~D~~~~~~-----~~~d~~~~vvsN-lPy~ 105 (253)
T TIGR00755 82 GDALKVDL-----PDFPKQLKVVSN-LPYN 105 (253)
T ss_pred CchhcCCh-----hHcCCcceEEEc-CChh
Confidence 66654332 1355 66664 4454
|
Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase |
| >PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=98.48 E-value=1.4e-06 Score=69.49 Aligned_cols=86 Identities=15% Similarity=0.110 Sum_probs=48.4
Q ss_pred CCcEEEeCCCcc-HHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHh-cCCCCcccccccCCCCeeEEEeecCCCCCcC-
Q 038343 23 NKSCFEVGSGVG-LVGICLAHVKASKVTLTDGDHLTLANMRSNLELN-QLSTDTSLLESYEDPNVVQCVHLPWESASES- 99 (191)
Q Consensus 23 ~~~VLElG~GtG-~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n-~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~- 99 (191)
..++||+|+|.. +..+..++...-++++||+++..++.+++|++.| .+. .+|.+....=......
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~------------~~I~l~~~~~~~~i~~~ 170 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLE------------SRIELRKQKNPDNIFDG 170 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-T------------TTEEEEE--ST-SSTTT
T ss_pred ceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccc------------cceEEEEcCCccccchh
Confidence 458999999955 6666655543339999999999999999999999 665 4566654432111111
Q ss_pred -CCCCCCCCEEEEcccccCCCC
Q 038343 100 -GLSAFVPEIILGADILYDRSC 120 (191)
Q Consensus 100 -~~~~~~fDvIi~~d~ly~~~~ 120 (191)
......||+.+|+..+|....
T Consensus 171 i~~~~e~~dftmCNPPFy~s~~ 192 (299)
T PF05971_consen 171 IIQPNERFDFTMCNPPFYSSQE 192 (299)
T ss_dssp STT--S-EEEEEE-----SS--
T ss_pred hhcccceeeEEecCCccccChh
Confidence 112347999999999997653
|
The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A. |
| >KOG2899 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.43 E-value=1.7e-06 Score=66.33 Aligned_cols=116 Identities=16% Similarity=0.209 Sum_probs=72.7
Q ss_pred CCCCCCcEEEeCCCccHHHHHHHh-cCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccc---------------cc---
Q 038343 19 EIFSNKSCFEVGSGVGLVGICLAH-VKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLL---------------ES--- 79 (191)
Q Consensus 19 ~~~~~~~VLElG~GtG~~~~~la~-~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~---------------~~--- 79 (191)
..+.++.+||+||-+|.+++.+++ .|+..+.++|+++..++.|+++++.-.-.. ..+. +.
T Consensus 55 ~~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~-~~~~~~~~~~~~~~~~~is~~~~a 133 (288)
T KOG2899|consen 55 DWFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHE-TEVSGKFPASFGVQFGPISQRNEA 133 (288)
T ss_pred cccCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhcccccccc-ccccCCCccccccccccccccccc
Confidence 346778999999999999997666 678899999999999999998875432110 0000 00
Q ss_pred -----cCCCCeeEEEe----ecCCCCCcCCCCCCCCCEEEEccccc------CCCChHHHHHHHHHHhccCCC
Q 038343 80 -----YEDPNVVQCVH----LPWESASESGLSAFVPEIILGADILY------DRSCFPDLVRILAILLNRRKS 137 (191)
Q Consensus 80 -----~~~~~~i~~~~----ldw~~~~~~~~~~~~fDvIi~~d~ly------~~~~~~~ll~~l~~ll~~~g~ 137 (191)
.+...++.+.. ++-.+.. +.....||+|+|-.+-- +.+-+..+++.+.++|.|||.
T Consensus 134 ~~a~t~~~p~n~~f~~~n~vle~~dfl--~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGi 204 (288)
T KOG2899|consen 134 DRAFTTDFPDNVWFQKENYVLESDDFL--DMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGI 204 (288)
T ss_pred cccccccCCcchhcccccEEEecchhh--hhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcE
Confidence 00011111110 0000000 12345899999854432 344578889999999999974
|
|
| >PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=98.42 E-value=4.4e-07 Score=69.64 Aligned_cols=124 Identities=15% Similarity=0.027 Sum_probs=83.0
Q ss_pred HHHHHHHHhhCCCCCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCC--cccccccCCCC
Q 038343 7 SLLLSEFILSFPEIFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTD--TSLLESYEDPN 84 (191)
Q Consensus 7 a~~L~~~l~~~~~~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~--~~~~~~~~~~~ 84 (191)
...|.+|+.. ....++.+||..|||.|.-...++..|. +|+++|+++.+++.+.+ .++.... ...........
T Consensus 23 ~p~L~~~~~~-l~~~~~~rvLvPgCG~g~D~~~La~~G~-~VvGvDls~~Ai~~~~~---e~~~~~~~~~~~~~~~~~~~ 97 (218)
T PF05724_consen 23 NPALVEYLDS-LALKPGGRVLVPGCGKGYDMLWLAEQGH-DVVGVDLSPTAIEQAFE---ENNLEPTVTSVGGFKRYQAG 97 (218)
T ss_dssp THHHHHHHHH-HTTSTSEEEEETTTTTSCHHHHHHHTTE-EEEEEES-HHHHHHHHH---HCTTEEECTTCTTEEEETTS
T ss_pred CHHHHHHHHh-cCCCCCCeEEEeCCCChHHHHHHHHCCC-eEEEEecCHHHHHHHHH---HhccCCCcccccceeeecCC
Confidence 4567777766 2233566999999999999999999997 99999999999988742 2221100 00000001234
Q ss_pred eeEEEeecCCCCCcCCCCCCCCCEEEEccccc--CCCChHHHHHHHHHHhccCCC
Q 038343 85 VVQCVHLPWESASESGLSAFVPEIILGADILY--DRSCFPDLVRILAILLNRRKS 137 (191)
Q Consensus 85 ~i~~~~ldw~~~~~~~~~~~~fDvIi~~d~ly--~~~~~~~ll~~l~~ll~~~g~ 137 (191)
+|.+...|.-...... .++||+|+=.-++. .++..+.-.+.+.++|+|+|.
T Consensus 98 ~i~~~~gDfF~l~~~~--~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~ 150 (218)
T PF05724_consen 98 RITIYCGDFFELPPED--VGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGR 150 (218)
T ss_dssp SEEEEES-TTTGGGSC--HHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEE
T ss_pred ceEEEEcccccCChhh--cCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCc
Confidence 6777888876543221 24799999655444 567889999999999999987
|
Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B. |
| >PLN02823 spermine synthase | Back alignment and domain information |
|---|
Probab=98.38 E-value=5.5e-06 Score=67.53 Aligned_cols=103 Identities=19% Similarity=0.184 Sum_probs=68.6
Q ss_pred CCCcEEEeCCCccHHHHHHHhc-CCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCC
Q 038343 22 SNKSCFEVGSGVGLVGICLAHV-KASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESG 100 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~-g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~ 100 (191)
..++||.||+|.|.....+.+. +..+|+++|+++.+++.+++.+..+..... ..++++...|--....
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~---------dprv~v~~~Da~~~L~-- 171 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFC---------DKRLELIINDARAELE-- 171 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhccccccccc---------CCceEEEEChhHHHHh--
Confidence 3468999999999888866654 456899999999999999988765431110 1355655544322211
Q ss_pred CCCCCCCEEEEcccccCCC--------ChHHHHH-HHHHHhccCCC
Q 038343 101 LSAFVPEIILGADILYDRS--------CFPDLVR-ILAILLNRRKS 137 (191)
Q Consensus 101 ~~~~~fDvIi~~d~ly~~~--------~~~~ll~-~l~~ll~~~g~ 137 (191)
...++||+|+. |+. ++. ....+++ .+++.|+|+|-
T Consensus 172 ~~~~~yDvIi~-D~~-dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gv 215 (336)
T PLN02823 172 KRDEKFDVIIG-DLA-DPVEGGPCYQLYTKSFYERIVKPKLNPGGI 215 (336)
T ss_pred hCCCCccEEEe-cCC-CccccCcchhhccHHHHHHHHHHhcCCCcE
Confidence 12357999996 432 221 1345677 89999999973
|
|
| >PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G | Back alignment and domain information |
|---|
Probab=98.36 E-value=4.4e-06 Score=62.44 Aligned_cols=92 Identities=21% Similarity=0.216 Sum_probs=68.7
Q ss_pred cEEEeCCCccHHHHHHHhcCC-CeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCCCCC
Q 038343 25 SCFEVGSGVGLVGICLAHVKA-SKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESGLSA 103 (191)
Q Consensus 25 ~VLElG~GtG~~~~~la~~g~-~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~~~~ 103 (191)
+++|+|+|.|.+|+.++-..+ .+++++|....=+..++.-+..-++. ++.+.....++ ....
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~-------------nv~v~~~R~E~----~~~~ 113 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLS-------------NVEVINGRAEE----PEYR 113 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-S-------------SEEEEES-HHH----TTTT
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCC-------------CEEEEEeeecc----cccC
Confidence 799999999999998877644 48999999888777777777666654 46777776655 1234
Q ss_pred CCCCEEEEcccccCCCChHHHHHHHHHHhccCCC
Q 038343 104 FVPEIILGADILYDRSCFPDLVRILAILLNRRKS 137 (191)
Q Consensus 104 ~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~ 137 (191)
.+||+|++= -...+..+++....+++++|.
T Consensus 114 ~~fd~v~aR----Av~~l~~l~~~~~~~l~~~G~ 143 (184)
T PF02527_consen 114 ESFDVVTAR----AVAPLDKLLELARPLLKPGGR 143 (184)
T ss_dssp T-EEEEEEE----SSSSHHHHHHHHGGGEEEEEE
T ss_pred CCccEEEee----hhcCHHHHHHHHHHhcCCCCE
Confidence 689999983 234688999999999999973
|
Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A. |
| >COG4076 Predicted RNA methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.34 E-value=1.3e-06 Score=64.63 Aligned_cols=97 Identities=13% Similarity=0.140 Sum_probs=73.7
Q ss_pred CcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCCCCC
Q 038343 24 KSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESGLSA 103 (191)
Q Consensus 24 ~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~~~~ 103 (191)
..+-|||+|+|.+++.+++. +.+|++++.+|.....+++|+..++.. ++++...|-.+.. +
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~-A~rViAiE~dPk~a~~a~eN~~v~g~~-------------n~evv~gDA~~y~---f-- 94 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHA-AERVIAIEKDPKRARLAEENLHVPGDV-------------NWEVVVGDARDYD---F-- 94 (252)
T ss_pred hceeeccCCcchHHHHHHhh-hceEEEEecCcHHHHHhhhcCCCCCCc-------------ceEEEeccccccc---c--
Confidence 47999999999999999988 779999999999999999998777653 5677776644332 1
Q ss_pred CCCCEEEE--cccccCCCChHHHHHHHHHHhccCCCCc
Q 038343 104 FVPEIILG--ADILYDRSCFPDLVRILAILLNRRKSVS 139 (191)
Q Consensus 104 ~~fDvIi~--~d~ly~~~~~~~ll~~l~~ll~~~g~~~ 139 (191)
...|+|+| -|+..-.+..-++++.+-++||..+...
T Consensus 95 e~ADvvicEmlDTaLi~E~qVpV~n~vleFLr~d~tii 132 (252)
T COG4076 95 ENADVVICEMLDTALIEEKQVPVINAVLEFLRYDPTII 132 (252)
T ss_pred cccceeHHHHhhHHhhcccccHHHHHHHHHhhcCCccc
Confidence 35788887 3444444556677788888999886543
|
|
| >KOG2497 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.31 E-value=6.8e-07 Score=70.00 Aligned_cols=128 Identities=21% Similarity=0.229 Sum_probs=78.5
Q ss_pred CcccccHHHHHHHHhhCCCCCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCccccccc
Q 038343 1 CSIWPSSLLLSEFILSFPEIFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESY 80 (191)
Q Consensus 1 ~~~W~~a~~L~~~l~~~~~~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~ 80 (191)
+.+|+++..|..++.+++...+++++.++|||.+...+..++.+. .|...+-...+.-....+...+. ....
T Consensus 69 ~~~w~~al~L~~~l~~~~d~~~~~~v~~l~~gi~~~~~~~a~~~~-~v~~~~~~~~~~~~l~~~~~~~~-~~~~------ 140 (262)
T KOG2497|consen 69 LSVWESALSLEADLRDKPDLSSELTVEELGCDIALKHVLAARVPD-CVVTLDSLRCAGLLLEEIILLSR-DLSL------ 140 (262)
T ss_pred cccchHHHHHHHHHhhCcccccccchHhhccCHHHHHHHHHhccc-ceecCCccCcHHHHHHHHHhccc-cccc------
Confidence 468999999999999999888899999999999998877777643 34333332233323333322222 1100
Q ss_pred CCCCeeEEEeecCCCCCcCC-CCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCc
Q 038343 81 EDPNVVQCVHLPWESASESG-LSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVS 139 (191)
Q Consensus 81 ~~~~~i~~~~ldw~~~~~~~-~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~ 139 (191)
..+-+...+.|......+ .....+|+|+++|++|. ....++++.+..+|..+.+..
T Consensus 141 --~~~~~~~~~~~~~~~~~~~~~~~~~dll~~AdV~yd-~~~~~~~~~~~~lL~~~~~~~ 197 (262)
T KOG2497|consen 141 --EVRDSAPELNQAFLESKPETSQEFTDLLGGADVIYD-TELRHLLETLMTLLLRWRGTG 197 (262)
T ss_pred --cccccchhHHHHHHhcCcccccchhhheeccCeeeh-hhhhHHHHHHHHHHHhccccc
Confidence 001111122221111000 11124999999999999 888888888888776664443
|
|
| >PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed | Back alignment and domain information |
|---|
Probab=98.28 E-value=2.8e-05 Score=66.15 Aligned_cols=101 Identities=10% Similarity=0.041 Sum_probs=67.8
Q ss_pred CCCCcEEEeCCCccHHHHHHHh-cC-CCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCc
Q 038343 21 FSNKSCFEVGSGVGLVGICLAH-VK-ASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASE 98 (191)
Q Consensus 21 ~~~~~VLElG~GtG~~~~~la~-~g-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~ 98 (191)
.++.+|||++||.|.=+..++. ++ ...+++.|+++.-++.+++|++..++. ++.+...|-....
T Consensus 112 ~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~-------------nv~v~~~D~~~~~- 177 (470)
T PRK11933 112 NAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVS-------------NVALTHFDGRVFG- 177 (470)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-------------eEEEEeCchhhhh-
Confidence 3778999999999976665554 32 248999999999999999999998764 3444444422111
Q ss_pred CCCCCCCCCEEEE----c--ccccCCCC----------------hHHHHHHHHHHhccCC
Q 038343 99 SGLSAFVPEIILG----A--DILYDRSC----------------FPDLVRILAILLNRRK 136 (191)
Q Consensus 99 ~~~~~~~fDvIi~----~--d~ly~~~~----------------~~~ll~~l~~ll~~~g 136 (191)
......||.|+. | .++...++ -..+|....++|+|||
T Consensus 178 -~~~~~~fD~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG 236 (470)
T PRK11933 178 -AALPETFDAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGG 236 (470)
T ss_pred -hhchhhcCeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 112246999994 2 12221111 2567778888999997
|
|
| >PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase | Back alignment and domain information |
|---|
Probab=98.27 E-value=8.3e-06 Score=60.78 Aligned_cols=93 Identities=16% Similarity=0.152 Sum_probs=61.2
Q ss_pred HHHHHHhhCCCCCCCCcEEEeCCCccHHHHHHHhcCCC-e---------EEEEcCChHHHHHHHHHHHHhcCCCCccccc
Q 038343 9 LLSEFILSFPEIFSNKSCFEVGSGVGLVGICLAHVKAS-K---------VTLTDGDHLTLANMRSNLELNQLSTDTSLLE 78 (191)
Q Consensus 9 ~L~~~l~~~~~~~~~~~VLElG~GtG~~~~~la~~g~~-~---------v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~ 78 (191)
.||..+.......++..|||--||+|.+-+.++..+.. . +++.|+++.+++.+++|++..+..
T Consensus 15 ~lA~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~------- 87 (179)
T PF01170_consen 15 TLAAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVE------- 87 (179)
T ss_dssp HHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-C-------
T ss_pred HHHHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccC-------
Confidence 45555555444556779999999999888876665432 2 789999999999999999987764
Q ss_pred ccCCCCeeEEEeecCCCCCcCCCCCCCCCEEEEcccccC
Q 038343 79 SYEDPNVVQCVHLPWESASESGLSAFVPEIILGADILYD 117 (191)
Q Consensus 79 ~~~~~~~i~~~~ldw~~~~~~~~~~~~fDvIi~~d~ly~ 117 (191)
..+.+...|..+.. +..+.+|+|++. .-|.
T Consensus 88 -----~~i~~~~~D~~~l~---~~~~~~d~Ivtn-PPyG 117 (179)
T PF01170_consen 88 -----DYIDFIQWDARELP---LPDGSVDAIVTN-PPYG 117 (179)
T ss_dssp -----GGEEEEE--GGGGG---GTTSBSCEEEEE---ST
T ss_pred -----CceEEEecchhhcc---cccCCCCEEEEC-cchh
Confidence 35666766655443 334689999984 5554
|
It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A. |
| >PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.26 E-value=9.1e-06 Score=61.38 Aligned_cols=100 Identities=17% Similarity=0.085 Sum_probs=68.7
Q ss_pred cEEEeCCCccHHHHHHHhcCC-CeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCCCCC
Q 038343 25 SCFEVGSGVGLVGICLAHVKA-SKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESGLSA 103 (191)
Q Consensus 25 ~VLElG~GtG~~~~~la~~g~-~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~~~~ 103 (191)
.+||||||.|-..+.+|...+ ..++++|+....+..+...+...++. ++.+...|........+.+
T Consensus 20 l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~-------------Nv~~~~~da~~~l~~~~~~ 86 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLK-------------NVRFLRGDARELLRRLFPP 86 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTS-------------SEEEEES-CTTHHHHHSTT
T ss_pred eEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhccc-------------ceEEEEccHHHHHhhcccC
Confidence 799999999988776666533 48999999999999888888877654 5777777755433223445
Q ss_pred CCCCEEEE--cccccCC------CChHHHHHHHHHHhccCCC
Q 038343 104 FVPEIILG--ADILYDR------SCFPDLVRILAILLNRRKS 137 (191)
Q Consensus 104 ~~fDvIi~--~d~ly~~------~~~~~ll~~l~~ll~~~g~ 137 (191)
+++|-|.. .|..... -..+.+++.+.++|+|||.
T Consensus 87 ~~v~~i~i~FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~ 128 (195)
T PF02390_consen 87 GSVDRIYINFPDPWPKKRHHKRRLVNPEFLELLARVLKPGGE 128 (195)
T ss_dssp TSEEEEEEES-----SGGGGGGSTTSHHHHHHHHHHEEEEEE
T ss_pred CchheEEEeCCCCCcccchhhhhcCCchHHHHHHHHcCCCCE
Confidence 67887764 3332211 1467899999999999974
|
1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B .... |
| >PLN02232 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=98.25 E-value=4e-06 Score=61.29 Aligned_cols=83 Identities=11% Similarity=-0.097 Sum_probs=61.9
Q ss_pred EEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCCCCCCCCCEEEEcccccCCCChHHHHHHH
Q 038343 49 TLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESGLSAFVPEIILGADILYDRSCFPDLVRIL 128 (191)
Q Consensus 49 ~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l 128 (191)
+++|.+++||+.++++.+...... ..++.+...|..+.+ +.+++||+|+++.++++..+...+++.+
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~----------~~~i~~~~~d~~~lp---~~~~~fD~v~~~~~l~~~~d~~~~l~ei 67 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSC----------YKCIEWIEGDAIDLP---FDDCEFDAVTMGYGLRNVVDRLRAMKEM 67 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccC----------CCceEEEEechhhCC---CCCCCeeEEEecchhhcCCCHHHHHHHH
Confidence 478999999999987654322110 124677777765432 4556899999999999999999999999
Q ss_pred HHHhccCCCCcccccc
Q 038343 129 AILLNRRKSVSSSRKE 144 (191)
Q Consensus 129 ~~ll~~~g~~~~~~~~ 144 (191)
.++|||||...++...
T Consensus 68 ~rvLkpGG~l~i~d~~ 83 (160)
T PLN02232 68 YRVLKPGSRVSILDFN 83 (160)
T ss_pred HHHcCcCeEEEEEECC
Confidence 9999999876654433
|
|
| >KOG2940 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.24 E-value=1.5e-06 Score=66.29 Aligned_cols=99 Identities=12% Similarity=0.094 Sum_probs=75.2
Q ss_pred CCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCCCC
Q 038343 23 NKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESGLS 102 (191)
Q Consensus 23 ~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~~~ 102 (191)
...++|||||.|.+...+...+..+++.+|.+-.|++.++.. +.+. +....+--. .+.-.+.
T Consensus 73 fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~-qdp~----------------i~~~~~v~D-EE~Ldf~ 134 (325)
T KOG2940|consen 73 FPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDA-QDPS----------------IETSYFVGD-EEFLDFK 134 (325)
T ss_pred CcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhcc-CCCc----------------eEEEEEecc-hhccccc
Confidence 347999999999999988888888999999999998877642 1122 222222211 1112256
Q ss_pred CCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCc
Q 038343 103 AFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVS 139 (191)
Q Consensus 103 ~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~ 139 (191)
++++|+||.+--+++..+++.-...++..|||+|...
T Consensus 135 ens~DLiisSlslHW~NdLPg~m~~ck~~lKPDg~Fi 171 (325)
T KOG2940|consen 135 ENSVDLIISSLSLHWTNDLPGSMIQCKLALKPDGLFI 171 (325)
T ss_pred ccchhhhhhhhhhhhhccCchHHHHHHHhcCCCccch
Confidence 6899999999999999999999999999999997544
|
|
| >PHA01634 hypothetical protein | Back alignment and domain information |
|---|
Probab=98.20 E-value=1.3e-05 Score=55.58 Aligned_cols=52 Identities=12% Similarity=0.030 Sum_probs=48.1
Q ss_pred CCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCC
Q 038343 20 IFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLS 71 (191)
Q Consensus 20 ~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~ 71 (191)
.+++++|+|+|++.|-.+++++..||++|++.+.++...+..++|++.|.+-
T Consensus 26 dvk~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k~nnI~ 77 (156)
T PHA01634 26 NVYQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCAYFNIC 77 (156)
T ss_pred eecCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhhhheee
Confidence 3578999999999999999999999999999999999999999999998754
|
|
| >COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=98.18 E-value=1.5e-05 Score=60.85 Aligned_cols=95 Identities=24% Similarity=0.221 Sum_probs=68.7
Q ss_pred CCcEEEeCCCccHHHHHHHhcCC-CeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCCC
Q 038343 23 NKSCFEVGSGVGLVGICLAHVKA-SKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESGL 101 (191)
Q Consensus 23 ~~~VLElG~GtG~~~~~la~~g~-~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~~ 101 (191)
+++++|+|+|.|.+|+.+|-..+ .+|+.+|....=+..++.-...-++. ++++.....++....
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~-------------nv~i~~~RaE~~~~~-- 132 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLE-------------NVEIVHGRAEEFGQE-- 132 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCC-------------CeEEehhhHhhcccc--
Confidence 57999999999999998874433 37999998777666666655555543 466666665544321
Q ss_pred CCCC-CCEEEEcccccCCCChHHHHHHHHHHhccCCCC
Q 038343 102 SAFV-PEIILGADILYDRSCFPDLVRILAILLNRRKSV 138 (191)
Q Consensus 102 ~~~~-fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~ 138 (191)
.. ||+|.+- -......+++....+++++|+.
T Consensus 133 --~~~~D~vtsR----Ava~L~~l~e~~~pllk~~g~~ 164 (215)
T COG0357 133 --KKQYDVVTSR----AVASLNVLLELCLPLLKVGGGF 164 (215)
T ss_pred --cccCcEEEee----hccchHHHHHHHHHhcccCCcc
Confidence 23 9999873 3456888999999999998864
|
|
| >PRK00536 speE spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.17 E-value=3.5e-05 Score=60.64 Aligned_cols=97 Identities=12% Similarity=-0.050 Sum_probs=67.6
Q ss_pred CCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCCC
Q 038343 22 SNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESGL 101 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~~ 101 (191)
+.++||=+|.|-|.+...+.+... +|+.+|+++++++.+++-+.......+ ..++.+.. |-.. .
T Consensus 72 ~pk~VLIiGGGDGg~~REvLkh~~-~v~mVeID~~Vv~~~k~~lP~~~~~~~---------DpRv~l~~--~~~~----~ 135 (262)
T PRK00536 72 ELKEVLIVDGFDLELAHQLFKYDT-HVDFVQADEKILDSFISFFPHFHEVKN---------NKNFTHAK--QLLD----L 135 (262)
T ss_pred CCCeEEEEcCCchHHHHHHHCcCC-eeEEEECCHHHHHHHHHHCHHHHHhhc---------CCCEEEee--hhhh----c
Confidence 356999999999999998888754 999999999999999985443221111 13444443 2111 1
Q ss_pred CCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCc
Q 038343 102 SAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVS 139 (191)
Q Consensus 102 ~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~ 139 (191)
..++||+||. |..+. +.+.+.+++.|+|+|-..
T Consensus 136 ~~~~fDVIIv-Ds~~~----~~fy~~~~~~L~~~Gi~v 168 (262)
T PRK00536 136 DIKKYDLIIC-LQEPD----IHKIDGLKRMLKEDGVFI 168 (262)
T ss_pred cCCcCCEEEE-cCCCC----hHHHHHHHHhcCCCcEEE
Confidence 2257999996 65544 567789999999997433
|
|
| >COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.15 E-value=1.6e-05 Score=60.92 Aligned_cols=114 Identities=18% Similarity=0.159 Sum_probs=76.3
Q ss_pred ccHHHHHHHHhhCCCCCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCC
Q 038343 5 PSSLLLSEFILSFPEIFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPN 84 (191)
Q Consensus 5 ~~a~~L~~~l~~~~~~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~ 84 (191)
.++..|...+....-..+++.+||+|+.||-++..+.+.|+++|+++|..-.-+ .-.++.+. .
T Consensus 62 RG~~KL~~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql---~~kLR~d~--------------r 124 (245)
T COG1189 62 RGGLKLEKALEEFELDVKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQL---HWKLRNDP--------------R 124 (245)
T ss_pred cHHHHHHHHHHhcCcCCCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCcc---CHhHhcCC--------------c
Confidence 457888888887777789999999999999999999999999999999853222 11111111 1
Q ss_pred eeEEEeecCCCCCcCCCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCc
Q 038343 85 VVQCVHLPWESASESGLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVS 139 (191)
Q Consensus 85 ~i~~~~ldw~~~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~ 139 (191)
-+..+..+........+.. ..|+|++ |+= .-....++..+..++++++...
T Consensus 125 V~~~E~tN~r~l~~~~~~~-~~d~~v~-DvS--FISL~~iLp~l~~l~~~~~~~v 175 (245)
T COG1189 125 VIVLERTNVRYLTPEDFTE-KPDLIVI-DVS--FISLKLILPALLLLLKDGGDLV 175 (245)
T ss_pred EEEEecCChhhCCHHHccc-CCCeEEE-Eee--hhhHHHHHHHHHHhcCCCceEE
Confidence 2223333333332222322 6788887 432 2347788899999999886544
|
|
| >KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.13 E-value=2.5e-05 Score=60.99 Aligned_cols=76 Identities=17% Similarity=0.179 Sum_probs=57.7
Q ss_pred CCCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCc
Q 038343 19 EIFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASE 98 (191)
Q Consensus 19 ~~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~ 98 (191)
...+...|||+|.|||.++..+...|+ +|+++++++.++..+++..+--... .++++...|.-+.+
T Consensus 55 ~~k~tD~VLEvGPGTGnLT~~lLe~~k-kVvA~E~Dprmvael~krv~gtp~~------------~kLqV~~gD~lK~d- 120 (315)
T KOG0820|consen 55 DLKPTDVVLEVGPGTGNLTVKLLEAGK-KVVAVEIDPRMVAELEKRVQGTPKS------------GKLQVLHGDFLKTD- 120 (315)
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHhcC-eEEEEecCcHHHHHHHHHhcCCCcc------------ceeeEEecccccCC-
Confidence 344667899999999999999998876 9999999999999998765433222 56778888765442
Q ss_pred CCCCCCCCCEEEEc
Q 038343 99 SGLSAFVPEIILGA 112 (191)
Q Consensus 99 ~~~~~~~fDvIi~~ 112 (191)
...||++|++
T Consensus 121 ----~P~fd~cVsN 130 (315)
T KOG0820|consen 121 ----LPRFDGCVSN 130 (315)
T ss_pred ----Ccccceeecc
Confidence 1358888873
|
|
| >COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.10 E-value=2.8e-05 Score=60.86 Aligned_cols=88 Identities=16% Similarity=0.200 Sum_probs=60.7
Q ss_pred HHHhhCCCCCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEee
Q 038343 12 EFILSFPEIFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHL 91 (191)
Q Consensus 12 ~~l~~~~~~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~l 91 (191)
+.+....+..++.+|||+|+|.|.++..+++.+. +|+++++|+.+++.+++..... .++.+...
T Consensus 20 ~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~~~-~v~aiEiD~~l~~~L~~~~~~~---------------~n~~vi~~ 83 (259)
T COG0030 20 DKIVEAANISPGDNVLEIGPGLGALTEPLLERAA-RVTAIEIDRRLAEVLKERFAPY---------------DNLTVING 83 (259)
T ss_pred HHHHHhcCCCCCCeEEEECCCCCHHHHHHHhhcC-eEEEEEeCHHHHHHHHHhcccc---------------cceEEEeC
Confidence 3444444455678999999999999999999976 8999999999999988765411 35666666
Q ss_pred cCCCCCcCCCCCCCCCEEEEcccccCC
Q 038343 92 PWESASESGLSAFVPEIILGADILYDR 118 (191)
Q Consensus 92 dw~~~~~~~~~~~~fDvIi~~d~ly~~ 118 (191)
|.-+.....+. .++.|+++ .-|+.
T Consensus 84 DaLk~d~~~l~--~~~~vVaN-lPY~I 107 (259)
T COG0030 84 DALKFDFPSLA--QPYKVVAN-LPYNI 107 (259)
T ss_pred chhcCcchhhc--CCCEEEEc-CCCcc
Confidence 65433211111 56777774 55554
|
|
| >TIGR01444 fkbM_fam methyltransferase, FkbM family | Back alignment and domain information |
|---|
Probab=98.08 E-value=2.1e-05 Score=56.03 Aligned_cols=47 Identities=21% Similarity=0.302 Sum_probs=41.9
Q ss_pred cEEEeCCCccHHHHHHHhcCCC-eEEEEcCChHHHHHHHHHHHHhcCC
Q 038343 25 SCFEVGSGVGLVGICLAHVKAS-KVTLTDGDHLTLANMRSNLELNQLS 71 (191)
Q Consensus 25 ~VLElG~GtG~~~~~la~~g~~-~v~~tD~~~~~l~~~~~n~~~n~~~ 71 (191)
.++|+|||.|..++.+++.+.. +|+++|.++.+.+.+++|++.|+..
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~ 48 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLP 48 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCC
Confidence 4899999999999988887764 8999999999999999999998753
|
Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548. |
| >PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.00026 Score=54.63 Aligned_cols=115 Identities=16% Similarity=0.143 Sum_probs=70.3
Q ss_pred ccccHHHHHHHHhhCCCCCCCCcEEEeCCCccHHHHHHHhc-CCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccC
Q 038343 3 IWPSSLLLSEFILSFPEIFSNKSCFEVGSGVGLVGICLAHV-KASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYE 81 (191)
Q Consensus 3 ~W~~a~~L~~~l~~~~~~~~~~~VLElG~GtG~~~~~la~~-g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~ 81 (191)
+++.+..=+.|+.+... ..|++||=+|=. =++|+.++.. .+++|+.+|+++..++.+++.++..++.
T Consensus 26 T~eT~~~Ra~~~~~~gd-L~gk~il~lGDD-DLtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~---------- 93 (243)
T PF01861_consen 26 TPETTLRRAALMAERGD-LEGKRILFLGDD-DLTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLP---------- 93 (243)
T ss_dssp -HHHHHHHHHHHHHTT--STT-EEEEES-T-T-HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT------------
T ss_pred cHHHHHHHHHHHHhcCc-ccCCEEEEEcCC-cHHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCc----------
Confidence 45556666667766543 578999999733 2666655543 2459999999999999999999988854
Q ss_pred CCCeeEEEeecCCCCCcCCCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccC
Q 038343 82 DPNVVQCVHLPWESASESGLSAFVPEIILGADILYDRSCFPDLVRILAILLNRR 135 (191)
Q Consensus 82 ~~~~i~~~~ldw~~~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~ 135 (191)
+++...|..+..+..+. ++||+++. |..|..+-+.-++..--..|+..
T Consensus 94 ----i~~~~~DlR~~LP~~~~-~~fD~f~T-DPPyT~~G~~LFlsRgi~~Lk~~ 141 (243)
T PF01861_consen 94 ----IEAVHYDLRDPLPEELR-GKFDVFFT-DPPYTPEGLKLFLSRGIEALKGE 141 (243)
T ss_dssp ----EEEE---TTS---TTTS-S-BSEEEE----SSHHHHHHHHHHHHHTB-ST
T ss_pred ----eEEEEecccccCCHHHh-cCCCEEEe-CCCCCHHHHHHHHHHHHHHhCCC
Confidence 77788888777655443 58999887 88888877777777777777754
|
All the members are 350-400 amino acids long.; PDB: 2QM3_A. |
| >KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.05 E-value=2.2e-05 Score=62.66 Aligned_cols=108 Identities=8% Similarity=-0.071 Sum_probs=70.2
Q ss_pred CCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcC--
Q 038343 22 SNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASES-- 99 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~-- 99 (191)
++..+++||||-|---+-.-+.|.+.++++|+.+..++.+++..+...-... +..-...+...|-......
T Consensus 117 ~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~-------~~~f~a~f~~~Dc~~~~l~d~ 189 (389)
T KOG1975|consen 117 RGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFK-------KFIFTAVFIAADCFKERLMDL 189 (389)
T ss_pred cccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhh-------cccceeEEEEeccchhHHHHh
Confidence 5668999999998766666677778999999999999999876543321100 0001233344443221111
Q ss_pred -CCCCCCCCEEEEcccccC----CCChHHHHHHHHHHhccCC
Q 038343 100 -GLSAFVPEIILGADILYD----RSCFPDLVRILAILLNRRK 136 (191)
Q Consensus 100 -~~~~~~fDvIi~~d~ly~----~~~~~~ll~~l~~ll~~~g 136 (191)
+..+.+||+|=+-=++|+ ....+-+++.+.+.|+|||
T Consensus 190 ~e~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG 231 (389)
T KOG1975|consen 190 LEFKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGG 231 (389)
T ss_pred ccCCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCc
Confidence 123445999987656653 3557778999999999997
|
|
| >PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.00023 Score=57.82 Aligned_cols=102 Identities=16% Similarity=0.095 Sum_probs=66.3
Q ss_pred cHHHHHHHHhhCC-------CCCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCccccc
Q 038343 6 SSLLLSEFILSFP-------EIFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLE 78 (191)
Q Consensus 6 ~a~~L~~~l~~~~-------~~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~ 78 (191)
++..|.+.+.... ...+|+++|||||++|..+..+.+.|+ +|+++|..+ + ...+..+
T Consensus 188 s~lKLeEA~~~F~~~~~~~~~~~~g~~vlDLGAsPGGWT~~L~~rG~-~V~AVD~g~-l----~~~L~~~---------- 251 (357)
T PRK11760 188 STLKLEEAFHVFIPRDEWDERLAPGMRAVDLGAAPGGWTYQLVRRGM-FVTAVDNGP-M----AQSLMDT---------- 251 (357)
T ss_pred HHHHHHHHHHhcccchhhhcccCCCCEEEEeCCCCcHHHHHHHHcCC-EEEEEechh-c----CHhhhCC----------
Confidence 4566766655432 235789999999999999999999998 999999643 2 2222222
Q ss_pred ccCCCCeeEEEeecCCCCCcCCCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccC
Q 038343 79 SYEDPNVVQCVHLPWESASESGLSAFVPEIILGADILYDRSCFPDLVRILAILLNRR 135 (191)
Q Consensus 79 ~~~~~~~i~~~~ldw~~~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~ 135 (191)
.++.....+-..... ....+|+|++ |+...+ ..+.+.+.+++..+
T Consensus 252 -----~~V~h~~~d~fr~~p---~~~~vDwvVc-Dmve~P---~rva~lm~~Wl~~g 296 (357)
T PRK11760 252 -----GQVEHLRADGFKFRP---PRKNVDWLVC-DMVEKP---ARVAELMAQWLVNG 296 (357)
T ss_pred -----CCEEEEeccCcccCC---CCCCCCEEEE-ecccCH---HHHHHHHHHHHhcC
Confidence 234444333211111 1357999987 776544 46778888888777
|
|
| >PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.00 E-value=1.4e-05 Score=60.42 Aligned_cols=113 Identities=13% Similarity=0.043 Sum_probs=63.4
Q ss_pred CCCcEEEeCCCcc--HHHH--HHHhc---CC---CeEEEEcCChHHHHHHHHHH-HHhcCCCCc-------cccc-----
Q 038343 22 SNKSCFEVGSGVG--LVGI--CLAHV---KA---SKVTLTDGDHLTLANMRSNL-ELNQLSTDT-------SLLE----- 78 (191)
Q Consensus 22 ~~~~VLElG~GtG--~~~~--~la~~---g~---~~v~~tD~~~~~l~~~~~n~-~~n~~~~~~-------~~~~----- 78 (191)
+..+|+-.||+|| ..++ .+... .. -++++||+|+.+|+.+++-+ ..+.+.... ....
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 4469999999999 3444 44441 11 28999999999999987521 011110000 0000
Q ss_pred --ccCCCCeeEEEeecCCCCCcCCCCCCCCCEEEEcccccC--CCChHHHHHHHHHHhccCCC
Q 038343 79 --SYEDPNVVQCVHLPWESASESGLSAFVPEIILGADILYD--RSCFPDLVRILAILLNRRKS 137 (191)
Q Consensus 79 --~~~~~~~i~~~~ldw~~~~~~~~~~~~fDvIi~~d~ly~--~~~~~~ll~~l~~ll~~~g~ 137 (191)
...-...+.+...+.-+. ....+.||+|+|-+|+-+ .+....+++.+.+.|+|||.
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~---~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~ 170 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDP---DPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGY 170 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S---------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEE
T ss_pred eEChHHcCceEEEecccCCC---CcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCE
Confidence 011125678888877661 123468999999887753 45678899999999999973
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A. |
| >COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.99 E-value=4.7e-05 Score=58.73 Aligned_cols=102 Identities=12% Similarity=0.041 Sum_probs=71.8
Q ss_pred CcEEEeCCCccHHHHHHHhcCC-CeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCCCC
Q 038343 24 KSCFEVGSGVGLVGICLAHVKA-SKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESGLS 102 (191)
Q Consensus 24 ~~VLElG~GtG~~~~~la~~g~-~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~~~ 102 (191)
..+||||||.|-.-+.+|+..+ ..++++|+....+..+.+.+...++. ++.+...|-......-.+
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~-------------Nlri~~~DA~~~l~~~~~ 116 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLK-------------NLRLLCGDAVEVLDYLIP 116 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCC-------------cEEEEcCCHHHHHHhcCC
Confidence 4799999999988777777654 48999999888888888888777752 466666654433322234
Q ss_pred CCCCCEEEE--cccccCCC------ChHHHHHHHHHHhccCCCC
Q 038343 103 AFVPEIILG--ADILYDRS------CFPDLVRILAILLNRRKSV 138 (191)
Q Consensus 103 ~~~fDvIi~--~d~ly~~~------~~~~ll~~l~~ll~~~g~~ 138 (191)
+++.|-|.. .|...-.. ..+.+++.+.+.|++||..
T Consensus 117 ~~sl~~I~i~FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l 160 (227)
T COG0220 117 DGSLDKIYINFPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVL 160 (227)
T ss_pred CCCeeEEEEECCCCCCCccccccccCCHHHHHHHHHHccCCCEE
Confidence 447777764 34433221 3678999999999999753
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00014 Score=65.12 Aligned_cols=112 Identities=16% Similarity=0.079 Sum_probs=74.0
Q ss_pred HHHHHHhhCCCC-CCCCcEEEeCCCccHHHHHHHhcC-------------------------------------------
Q 038343 9 LLSEFILSFPEI-FSNKSCFEVGSGVGLVGICLAHVK------------------------------------------- 44 (191)
Q Consensus 9 ~L~~~l~~~~~~-~~~~~VLElG~GtG~~~~~la~~g------------------------------------------- 44 (191)
.||.-+...... .++..++|-+||+|.+.+.++...
T Consensus 176 tlAaa~l~~a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~ 255 (702)
T PRK11783 176 NLAAAILLRSGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAEL 255 (702)
T ss_pred HHHHHHHHHcCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhccccc
Confidence 444444443333 356799999999998888665421
Q ss_pred CCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCCCCCCCCCEEEEcccccCC----CC
Q 038343 45 ASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESGLSAFVPEIILGADILYDR----SC 120 (191)
Q Consensus 45 ~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~~~~~~fDvIi~~d~ly~~----~~ 120 (191)
..+++++|+++.+++.++.|+..+++. ..+.+...|+.+.... ...++||+|+++..+-.. ..
T Consensus 256 ~~~i~G~Did~~av~~A~~N~~~~g~~------------~~i~~~~~D~~~~~~~-~~~~~~d~IvtNPPYg~r~~~~~~ 322 (702)
T PRK11783 256 PSKFYGSDIDPRVIQAARKNARRAGVA------------ELITFEVKDVADLKNP-LPKGPTGLVISNPPYGERLGEEPA 322 (702)
T ss_pred CceEEEEECCHHHHHHHHHHHHHcCCC------------cceEEEeCChhhcccc-cccCCCCEEEECCCCcCccCchHH
Confidence 116999999999999999999999875 4577777777654321 122469999987554321 22
Q ss_pred hHHHHHHHHHHhc
Q 038343 121 FPDLVRILAILLN 133 (191)
Q Consensus 121 ~~~ll~~l~~ll~ 133 (191)
...+-+.+-..++
T Consensus 323 l~~lY~~lg~~lk 335 (702)
T PRK11783 323 LIALYSQLGRRLK 335 (702)
T ss_pred HHHHHHHHHHHHH
Confidence 3445555555555
|
|
| >KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.93 E-value=6.5e-05 Score=56.60 Aligned_cols=109 Identities=17% Similarity=0.124 Sum_probs=69.3
Q ss_pred CCCCCcEEEeCCCccHHHHHHHh-cCCC--eEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCC
Q 038343 20 IFSNKSCFEVGSGVGLVGICLAH-VKAS--KVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESA 96 (191)
Q Consensus 20 ~~~~~~VLElG~GtG~~~~~la~-~g~~--~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~ 96 (191)
..+|.+.||+|+|||.++..++. .|+. .++++|.-++.++..++|+...-..-+.. . .-....+.+...|-...
T Consensus 80 L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~-~--~~~~~~l~ivvGDgr~g 156 (237)
T KOG1661|consen 80 LQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESS-S--KLKRGELSIVVGDGRKG 156 (237)
T ss_pred hccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhh-h--hhccCceEEEeCCcccc
Confidence 56899999999999987776664 3432 34899999999999999987653210000 0 00012344444443222
Q ss_pred CcCCCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCcc
Q 038343 97 SESGLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVSS 140 (191)
Q Consensus 97 ~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~~ 140 (191)
. .+..+||-|.+. .....+.+.+-..|+++|+...
T Consensus 157 ~---~e~a~YDaIhvG------Aaa~~~pq~l~dqL~~gGrlli 191 (237)
T KOG1661|consen 157 Y---AEQAPYDAIHVG------AAASELPQELLDQLKPGGRLLI 191 (237)
T ss_pred C---CccCCcceEEEc------cCccccHHHHHHhhccCCeEEE
Confidence 1 234589998764 3455666777788888886553
|
|
| >COG2521 Predicted archaeal methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.92 E-value=7.9e-06 Score=62.48 Aligned_cols=113 Identities=12% Similarity=0.042 Sum_probs=77.1
Q ss_pred CCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCCC
Q 038343 22 SNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESGL 101 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~~ 101 (191)
+|.+|||-..|-|.+++.+.+.|+.+|+-++.++.+|+.++.|-=..++. ...+++...|-.+.. ..+
T Consensus 134 ~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~-----------~~~i~iilGD~~e~V-~~~ 201 (287)
T COG2521 134 RGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELF-----------EIAIKIILGDAYEVV-KDF 201 (287)
T ss_pred cCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCcccc-----------ccccEEecccHHHHH-hcC
Confidence 68899999999999999999999999999999999998886542111111 123455555433221 235
Q ss_pred CCCCCCEEEEcccccCC---CChHHHHHHHHHHhccCCCCccccccCC
Q 038343 102 SAFVPEIILGADILYDR---SCFPDLVRILAILLNRRKSVSSSRKESS 146 (191)
Q Consensus 102 ~~~~fDvIi~~d~ly~~---~~~~~ll~~l~~ll~~~g~~~~~~~~~~ 146 (191)
.+.+||+||--..-+.. -..+.+-+.+.++|+|||+.-.....|.
T Consensus 202 ~D~sfDaIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg 249 (287)
T COG2521 202 DDESFDAIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPG 249 (287)
T ss_pred CccccceEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCC
Confidence 67789998742221111 1256788999999999997655554443
|
|
| >PRK10742 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.92 E-value=7.8e-05 Score=57.94 Aligned_cols=89 Identities=15% Similarity=0.195 Sum_probs=59.6
Q ss_pred cEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccC-CCCeeEEEeecCCCCCcCCCCC
Q 038343 25 SCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYE-DPNVVQCVHLPWESASESGLSA 103 (191)
Q Consensus 25 ~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~-~~~~i~~~~ldw~~~~~~~~~~ 103 (191)
+|||+-+|+|..++.++..|+ +|+++|.++.+...++++++.-....+. .. -..++++...|-.+.... ..
T Consensus 91 ~VLD~TAGlG~Da~~las~G~-~V~~vEr~p~vaalL~dgL~ra~~~~~~-----~~~~~~ri~l~~~da~~~L~~-~~- 162 (250)
T PRK10742 91 DVVDATAGLGRDAFVLASVGC-RVRMLERNPVVAALLDDGLARGYADAEI-----GGWLQERLQLIHASSLTALTD-IT- 162 (250)
T ss_pred EEEECCCCccHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHhhhcccc-----chhhhceEEEEeCcHHHHHhh-CC-
Confidence 899999999999999999999 5999999999999999998873211000 00 002355544443222111 12
Q ss_pred CCCCEEEEcccccCCCChH
Q 038343 104 FVPEIILGADILYDRSCFP 122 (191)
Q Consensus 104 ~~fDvIi~~d~ly~~~~~~ 122 (191)
.+||+|+. |..|-...-.
T Consensus 163 ~~fDVVYl-DPMfp~~~ks 180 (250)
T PRK10742 163 PRPQVVYL-DPMFPHKQKS 180 (250)
T ss_pred CCCcEEEE-CCCCCCCccc
Confidence 36999996 8888554433
|
|
| >COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.00017 Score=57.47 Aligned_cols=102 Identities=13% Similarity=-0.005 Sum_probs=67.2
Q ss_pred CcEEEeCCCccHHHHHHHhcC-CCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCCCC
Q 038343 24 KSCFEVGSGVGLVGICLAHVK-ASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESGLS 102 (191)
Q Consensus 24 ~~VLElG~GtG~~~~~la~~g-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~~~ 102 (191)
++||-||.|.|.+...+.+.. ..+++.+|+++.+++.+++-+........ ..++.+...|-.+.... .
T Consensus 78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~---------dpRv~i~i~Dg~~~v~~--~ 146 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGAD---------DPRVEIIIDDGVEFLRD--C 146 (282)
T ss_pred CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccC---------CCceEEEeccHHHHHHh--C
Confidence 599999999998888777664 56999999999999999876543321100 13444444432211111 1
Q ss_pred CCCCCEEEEcccccCCC-----ChHHHHHHHHHHhccCCC
Q 038343 103 AFVPEIILGADILYDRS-----CFPDLVRILAILLNRRKS 137 (191)
Q Consensus 103 ~~~fDvIi~~d~ly~~~-----~~~~ll~~l~~ll~~~g~ 137 (191)
..+||+||. |+--... .-..+.+.+++.|+++|-
T Consensus 147 ~~~fDvIi~-D~tdp~gp~~~Lft~eFy~~~~~~L~~~Gi 185 (282)
T COG0421 147 EEKFDVIIV-DSTDPVGPAEALFTEEFYEGCRRALKEDGI 185 (282)
T ss_pred CCcCCEEEE-cCCCCCCcccccCCHHHHHHHHHhcCCCcE
Confidence 137999997 3321111 147899999999999984
|
|
| >PRK10611 chemotaxis methyltransferase CheR; Provisional | Back alignment and domain information |
|---|
Probab=97.91 E-value=5.1e-05 Score=60.56 Aligned_cols=113 Identities=19% Similarity=0.126 Sum_probs=70.9
Q ss_pred CCcEEEeCCCcc--HHHH--HHHhcC-----CCeEEEEcCChHHHHHHHHHHH----HhcCCCCc----cccc-------
Q 038343 23 NKSCFEVGSGVG--LVGI--CLAHVK-----ASKVTLTDGDHLTLANMRSNLE----LNQLSTDT----SLLE------- 78 (191)
Q Consensus 23 ~~~VLElG~GtG--~~~~--~la~~g-----~~~v~~tD~~~~~l~~~~~n~~----~n~~~~~~----~~~~------- 78 (191)
..+|+-.||+|| ..++ .+.... .-+|++||+|+.+|+.+++-+- ..++.... ....
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~ 195 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL 195 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence 369999999999 3444 443321 1279999999999999986420 01110000 0000
Q ss_pred ---ccCCCCeeEEEeecCCCCCcCCCCCCCCCEEEEcccccCC--CChHHHHHHHHHHhccCCC
Q 038343 79 ---SYEDPNVVQCVHLPWESASESGLSAFVPEIILGADILYDR--SCFPDLVRILAILLNRRKS 137 (191)
Q Consensus 79 ---~~~~~~~i~~~~ldw~~~~~~~~~~~~fDvIi~~d~ly~~--~~~~~ll~~l~~ll~~~g~ 137 (191)
...-...+.+...+..+... ...+.||+|+|-+++.+. +....+++.+.+.|+|||.
T Consensus 196 ~~v~~~lr~~V~F~~~NL~~~~~--~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~ 257 (287)
T PRK10611 196 VRVRQELANYVDFQQLNLLAKQW--AVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGL 257 (287)
T ss_pred EEEChHHHccCEEEcccCCCCCC--ccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcE
Confidence 01112456666666654211 123689999998877544 5688999999999999984
|
|
| >COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.0002 Score=56.56 Aligned_cols=112 Identities=17% Similarity=0.120 Sum_probs=71.3
Q ss_pred CCCcEEEeCCCcc--H--HHHHHHhcC------CCeEEEEcCChHHHHHHHHHHHH-----hcCCCCc----ccc--c--
Q 038343 22 SNKSCFEVGSGVG--L--VGICLAHVK------ASKVTLTDGDHLTLANMRSNLEL-----NQLSTDT----SLL--E-- 78 (191)
Q Consensus 22 ~~~~VLElG~GtG--~--~~~~la~~g------~~~v~~tD~~~~~l~~~~~n~~~-----n~~~~~~----~~~--~-- 78 (191)
...+|+-.||+|| - +++.+...+ .-+|++||+|..+|+.|+.-+=. .++.... ... +
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~ 175 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS 175 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence 3569999999999 3 444444433 13899999999999988753211 1111000 000 0
Q ss_pred ---ccCCCCeeEEEeecCCCCCcCCCCCCCCCEEEEcccc-c-CCCChHHHHHHHHHHhccCC
Q 038343 79 ---SYEDPNVVQCVHLPWESASESGLSAFVPEIILGADIL-Y-DRSCFPDLVRILAILLNRRK 136 (191)
Q Consensus 79 ---~~~~~~~i~~~~ldw~~~~~~~~~~~~fDvIi~~d~l-y-~~~~~~~ll~~l~~ll~~~g 136 (191)
++.-...|.+...+...... ..+.||+|+|=+|+ | +.+.-..+++.+...|+|||
T Consensus 176 y~v~~~ir~~V~F~~~NLl~~~~---~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG 235 (268)
T COG1352 176 YRVKEELRKMVRFRRHNLLDDSP---FLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGG 235 (268)
T ss_pred EEEChHHhcccEEeecCCCCCcc---ccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCC
Confidence 01123456666666544331 33579999997765 4 55678899999999999997
|
|
| >PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e | Back alignment and domain information |
|---|
Probab=97.87 E-value=4.3e-05 Score=60.36 Aligned_cols=103 Identities=17% Similarity=0.223 Sum_probs=66.3
Q ss_pred HHHHHhhCCCCCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEE
Q 038343 10 LSEFILSFPEIFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCV 89 (191)
Q Consensus 10 L~~~l~~~~~~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~ 89 (191)
+++.+.+..+..++..|||+|+|+|.++..+.+.+ ++|+++|.++...+.+++....+ .++++.
T Consensus 18 ~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~-~~v~~vE~d~~~~~~L~~~~~~~---------------~~~~vi 81 (262)
T PF00398_consen 18 IADKIVDALDLSEGDTVLEIGPGPGALTRELLKRG-KRVIAVEIDPDLAKHLKERFASN---------------PNVEVI 81 (262)
T ss_dssp HHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHS-SEEEEEESSHHHHHHHHHHCTTC---------------SSEEEE
T ss_pred HHHHHHHhcCCCCCCEEEEeCCCCccchhhHhccc-CcceeecCcHhHHHHHHHHhhhc---------------ccceee
Confidence 44444444444478899999999999999998887 59999999999998888765421 357777
Q ss_pred eecCCCCCcCCCCCCCCCEEEEcccccCCCChHHHHHHHHHH
Q 038343 90 HLPWESASESGLSAFVPEIILGADILYDRSCFPDLVRILAIL 131 (191)
Q Consensus 90 ~ldw~~~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~l 131 (191)
..|.-+.............|+++ .-| ....+++..+-.+
T Consensus 82 ~~D~l~~~~~~~~~~~~~~vv~N-lPy--~is~~il~~ll~~ 120 (262)
T PF00398_consen 82 NGDFLKWDLYDLLKNQPLLVVGN-LPY--NISSPILRKLLEL 120 (262)
T ss_dssp ES-TTTSCGGGHCSSSEEEEEEE-ETG--TGHHHHHHHHHHH
T ss_pred ecchhccccHHhhcCCceEEEEE-ecc--cchHHHHHHHhhc
Confidence 77765543221112234566664 555 2334555555443
|
g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A .... |
| >KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.87 E-value=4.9e-05 Score=57.50 Aligned_cols=103 Identities=16% Similarity=0.113 Sum_probs=79.0
Q ss_pred CCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCC
Q 038343 21 FSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESG 100 (191)
Q Consensus 21 ~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~ 100 (191)
.+|.+||++|=|-|++...+.......-+.++.+|++++.++.+.-... .++.+....|++... .
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~ek--------------~nViil~g~WeDvl~-~ 164 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWREK--------------ENVIILEGRWEDVLN-T 164 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccccc--------------cceEEEecchHhhhc-c
Confidence 3688999999999999888887777778889999999988876543322 568888999998754 3
Q ss_pred CCCCCCCEEEEcccc-cCCCChHHHHHHHHHHhccCCCCc
Q 038343 101 LSAFVPEIILGADIL-YDRSCFPDLVRILAILLNRRKSVS 139 (191)
Q Consensus 101 ~~~~~fDvIi~~d~l-y~~~~~~~ll~~l~~ll~~~g~~~ 139 (191)
+.++.||-|+- |.+ .+-++...+-+.+-+||||+|...
T Consensus 165 L~d~~FDGI~y-DTy~e~yEdl~~~hqh~~rLLkP~gv~S 203 (271)
T KOG1709|consen 165 LPDKHFDGIYY-DTYSELYEDLRHFHQHVVRLLKPEGVFS 203 (271)
T ss_pred ccccCcceeEe-echhhHHHHHHHHHHHHhhhcCCCceEE
Confidence 56677998874 444 334567777888899999997543
|
|
| >COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.0003 Score=57.80 Aligned_cols=92 Identities=15% Similarity=0.154 Sum_probs=70.4
Q ss_pred HHHHHHhhCCCCCCCCcEEEeCCCccHHHHHHHhcCCC----------------------------------------eE
Q 038343 9 LLSEFILSFPEIFSNKSCFEVGSGVGLVGICLAHVKAS----------------------------------------KV 48 (191)
Q Consensus 9 ~L~~~l~~~~~~~~~~~VLElG~GtG~~~~~la~~g~~----------------------------------------~v 48 (191)
-||.-+.......++..++|-=||+|.+.+.+|.++.. .+
T Consensus 178 tLAaAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~ 257 (381)
T COG0116 178 TLAAAILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPII 257 (381)
T ss_pred HHHHHHHHHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceE
Confidence 35555555555566778999999999999988877531 37
Q ss_pred EEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCCCCCCCCCEEEEccccc
Q 038343 49 TLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESGLSAFVPEIILGADILY 116 (191)
Q Consensus 49 ~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~~~~~~fDvIi~~d~ly 116 (191)
++.|+++.+++.++.|+...+.. ..|.+.+.|....... + ..+|+||++. -|
T Consensus 258 ~G~Did~r~i~~Ak~NA~~AGv~------------d~I~f~~~d~~~l~~~-~--~~~gvvI~NP-PY 309 (381)
T COG0116 258 YGSDIDPRHIEGAKANARAAGVG------------DLIEFKQADATDLKEP-L--EEYGVVISNP-PY 309 (381)
T ss_pred EEecCCHHHHHHHHHHHHhcCCC------------ceEEEEEcchhhCCCC-C--CcCCEEEeCC-Cc
Confidence 79999999999999999999876 5788888887655321 1 5799999864 45
|
|
| >PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2 | Back alignment and domain information |
|---|
Probab=97.84 E-value=3.3e-05 Score=60.45 Aligned_cols=105 Identities=12% Similarity=0.026 Sum_probs=67.1
Q ss_pred CCCcEEEeCCCccHHHHHHHhcC-CCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCC
Q 038343 22 SNKSCFEVGSGVGLVGICLAHVK-ASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESG 100 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~g-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~ 100 (191)
+.++||-||.|.|.....+.+.. ..+++++|+++.+++.+++-+........ ..++++...|-......
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~---------d~r~~i~~~Dg~~~l~~- 145 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLD---------DPRVRIIIGDGRKFLKE- 145 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGG---------STTEEEEESTHHHHHHT-
T ss_pred CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccC---------CCceEEEEhhhHHHHHh-
Confidence 46799999999998888777764 46999999999999999887655432110 13555555442111111
Q ss_pred CCCCCCCEEEEcccccC---C--CChHHHHHHHHHHhccCCC
Q 038343 101 LSAFVPEIILGADILYD---R--SCFPDLVRILAILLNRRKS 137 (191)
Q Consensus 101 ~~~~~fDvIi~~d~ly~---~--~~~~~ll~~l~~ll~~~g~ 137 (191)
....+||+|+. |..-. . -....+++.+++.|+|+|-
T Consensus 146 ~~~~~yDvIi~-D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv 186 (246)
T PF01564_consen 146 TQEEKYDVIIV-DLTDPDGPAPNLFTREFYQLCKRRLKPDGV 186 (246)
T ss_dssp SSST-EEEEEE-ESSSTTSCGGGGSSHHHHHHHHHHEEEEEE
T ss_pred ccCCcccEEEE-eCCCCCCCcccccCHHHHHHHHhhcCCCcE
Confidence 11127999997 33221 1 1246889999999999974
|
5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B .... |
| >PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 [] | Back alignment and domain information |
|---|
Probab=97.82 E-value=5.8e-05 Score=57.39 Aligned_cols=112 Identities=14% Similarity=0.073 Sum_probs=54.5
Q ss_pred CCCCCCcEEEeCCCccHHHH-HHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCC
Q 038343 19 EIFSNKSCFEVGSGVGLVGI-CLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESAS 97 (191)
Q Consensus 19 ~~~~~~~VLElG~GtG~~~~-~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~ 97 (191)
...++...+|||||.|-+-+ ++...++++.+++++.+...+.++...+....... ........+.+...|+-+..
T Consensus 39 ~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~----~~g~~~~~v~l~~gdfl~~~ 114 (205)
T PF08123_consen 39 NLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMK----HYGKRPGKVELIHGDFLDPD 114 (205)
T ss_dssp T--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHH----HCTB---EEEEECS-TTTHH
T ss_pred CCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHH----HhhcccccceeeccCccccH
Confidence 34467799999999996655 44456777899999998877766654433221000 00001245666666654321
Q ss_pred cCCCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccC
Q 038343 98 ESGLSAFVPEIILGADILYDRSCFPDLVRILAILLNRR 135 (191)
Q Consensus 98 ~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~ 135 (191)
.....-...|+|+++...|+++....+.+ +..-|++|
T Consensus 115 ~~~~~~s~AdvVf~Nn~~F~~~l~~~L~~-~~~~lk~G 151 (205)
T PF08123_consen 115 FVKDIWSDADVVFVNNTCFDPDLNLALAE-LLLELKPG 151 (205)
T ss_dssp HHHHHGHC-SEEEE--TTT-HHHHHHHHH-HHTTS-TT
T ss_pred hHhhhhcCCCEEEEeccccCHHHHHHHHH-HHhcCCCC
Confidence 10000024799999998887665554433 33344555
|
H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A .... |
| >COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.0015 Score=53.92 Aligned_cols=103 Identities=16% Similarity=0.063 Sum_probs=65.7
Q ss_pred CCCCcEEEeCCCccHHHHHHHhcC---CCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCC
Q 038343 21 FSNKSCFEVGSGVGLVGICLAHVK---ASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESAS 97 (191)
Q Consensus 21 ~~~~~VLElG~GtG~~~~~la~~g---~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~ 97 (191)
.+|.+|||+.++.|.=+..++.+. ...|++.|.++.=++.+++|++..+.. ++.+...|-....
T Consensus 155 ~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~-------------nv~~~~~d~~~~~ 221 (355)
T COG0144 155 KPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVR-------------NVIVVNKDARRLA 221 (355)
T ss_pred CCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCC-------------ceEEEeccccccc
Confidence 367899999999885444444332 125799999999999999999998865 2344444422221
Q ss_pred cCCCCCCCCCEEEE------cccccCCC----------------ChHHHHHHHHHHhccCC
Q 038343 98 ESGLSAFVPEIILG------ADILYDRS----------------CFPDLVRILAILLNRRK 136 (191)
Q Consensus 98 ~~~~~~~~fDvIi~------~d~ly~~~----------------~~~~ll~~l~~ll~~~g 136 (191)
.......+||.|+. ..++...+ ....+|....++|||||
T Consensus 222 ~~~~~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG 282 (355)
T COG0144 222 ELLPGGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGG 282 (355)
T ss_pred ccccccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 11112235999995 33332111 14566777888888886
|
|
| >PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.0007 Score=53.67 Aligned_cols=104 Identities=11% Similarity=0.040 Sum_probs=74.6
Q ss_pred CCCcEEEeCCCccHHHH-HHHhcC--CCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCc
Q 038343 22 SNKSCFEVGSGVGLVGI-CLAHVK--ASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASE 98 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~-~la~~g--~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~ 98 (191)
...+|||+.||.|--=+ .+.... ..++.+.|+++..++..++-++.+++. ..+++...|-.+...
T Consensus 135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~------------~i~~f~~~dAfd~~~ 202 (311)
T PF12147_consen 135 RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLE------------DIARFEQGDAFDRDS 202 (311)
T ss_pred CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCc------------cceEEEecCCCCHhH
Confidence 45599999999994433 444443 359999999999999999999999876 344777777544322
Q ss_pred CCCCCCCCCEEEEcccccCCCC---hHHHHHHHHHHhccCCC
Q 038343 99 SGLSAFVPEIILGADILYDRSC---FPDLVRILAILLNRRKS 137 (191)
Q Consensus 99 ~~~~~~~fDvIi~~d~ly~~~~---~~~ll~~l~~ll~~~g~ 137 (191)
-.-....++++|.+.++...++ +...++-+..++.|+|.
T Consensus 203 l~~l~p~P~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~ 244 (311)
T PF12147_consen 203 LAALDPAPTLAIVSGLYELFPDNDLVRRSLAGLARALEPGGY 244 (311)
T ss_pred hhccCCCCCEEEEecchhhCCcHHHHHHHHHHHHHHhCCCcE
Confidence 1112346899999988776665 44556777788888863
|
It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily. |
| >PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like | Back alignment and domain information |
|---|
Probab=97.77 E-value=5.6e-05 Score=57.45 Aligned_cols=106 Identities=15% Similarity=0.071 Sum_probs=65.8
Q ss_pred CCCcEEEeCCCccHHHH-HHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCC
Q 038343 22 SNKSCFEVGSGVGLVGI-CLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESG 100 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~-~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~ 100 (191)
...+.||.|||.|-++- .|... ..+|.++|..+..++.+++.+..... ....+......+..
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~-f~~VDlVEp~~~Fl~~a~~~l~~~~~-------------~v~~~~~~gLQ~f~--- 117 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPV-FDEVDLVEPVEKFLEQAKEYLGKDNP-------------RVGEFYCVGLQDFT--- 117 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC--SEEEEEES-HHHHHHHHHHTCCGGC-------------CEEEEEES-GGG-----
T ss_pred CcceEEecccccchhHHHHHHHh-cCEeEEeccCHHHHHHHHHHhcccCC-------------CcceEEecCHhhcc---
Confidence 45589999999998886 44555 67999999999999999876544221 11222332222221
Q ss_pred CCCCCCCEEEEcccccCCC--ChHHHHHHHHHHhccCCCCccccccCC
Q 038343 101 LSAFVPEIILGADILYDRS--CFPDLVRILAILLNRRKSVSSSRKESS 146 (191)
Q Consensus 101 ~~~~~fDvIi~~d~ly~~~--~~~~ll~~l~~ll~~~g~~~~~~~~~~ 146 (191)
....+||+|.+-.|+-|.. ++-.+|+.++..|+|+| .++.+...
T Consensus 118 P~~~~YDlIW~QW~lghLTD~dlv~fL~RCk~~L~~~G--~IvvKEN~ 163 (218)
T PF05891_consen 118 PEEGKYDLIWIQWCLGHLTDEDLVAFLKRCKQALKPNG--VIVVKENV 163 (218)
T ss_dssp --TT-EEEEEEES-GGGS-HHHHHHHHHHHHHHEEEEE--EEEEEEEE
T ss_pred CCCCcEeEEEehHhhccCCHHHHHHHHHHHHHhCcCCc--EEEEEecC
Confidence 1235899999999988764 46678999999999985 34444443
|
; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B. |
| >KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00057 Score=53.58 Aligned_cols=115 Identities=12% Similarity=0.088 Sum_probs=77.3
Q ss_pred hhCCCCCCCCcEEEeCCCccHHHHHHHhcC-C-CeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeec
Q 038343 15 LSFPEIFSNKSCFEVGSGVGLVGICLAHVK-A-SKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLP 92 (191)
Q Consensus 15 ~~~~~~~~~~~VLElG~GtG~~~~~la~~g-~-~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ld 92 (191)
.+..+..+|.+|||-|.|+|.++.++++.- + .+++-.|+++.-.+.+.+..+..++. .++.+..-|
T Consensus 98 ~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~------------~~vt~~hrD 165 (314)
T KOG2915|consen 98 LSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIG------------DNVTVTHRD 165 (314)
T ss_pred HHHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCC------------cceEEEEee
Confidence 334455689999999999999999888752 2 48999999887777777777777754 456666666
Q ss_pred CCCCCcCCCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCccccccCCCC
Q 038343 93 WESASESGLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVSSSRKESSKG 148 (191)
Q Consensus 93 w~~~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~~~~~~~~~~ 148 (191)
....- ....+..+|.|+. +.+.+...+-.+.++|+.+|. ....++||-+
T Consensus 166 Vc~~G-F~~ks~~aDaVFL-----DlPaPw~AiPha~~~lk~~g~-r~csFSPCIE 214 (314)
T KOG2915|consen 166 VCGSG-FLIKSLKADAVFL-----DLPAPWEAIPHAAKILKDEGG-RLCSFSPCIE 214 (314)
T ss_pred cccCC-ccccccccceEEE-----cCCChhhhhhhhHHHhhhcCc-eEEeccHHHH
Confidence 54321 1122456777654 455555566666667777764 4445677643
|
|
| >PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional | Back alignment and domain information |
|---|
Probab=97.76 E-value=7.5e-05 Score=59.82 Aligned_cols=47 Identities=13% Similarity=0.059 Sum_probs=39.1
Q ss_pred CCCCcEEEeCCCccHHHHHHHhcC--CCeEEEEcCChHHHHHHHHHHHH
Q 038343 21 FSNKSCFEVGSGVGLVGICLAHVK--ASKVTLTDGDHLTLANMRSNLEL 67 (191)
Q Consensus 21 ~~~~~VLElG~GtG~~~~~la~~g--~~~v~~tD~~~~~l~~~~~n~~~ 67 (191)
.++..+||.+||.|.-+..+++.. ..+|++.|.++.+++.+++.+..
T Consensus 18 ~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~ 66 (296)
T PRK00050 18 KPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP 66 (296)
T ss_pred CCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc
Confidence 367799999999999888777663 24899999999999999887643
|
|
| >KOG1501 consensus Arginine N-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.76 E-value=8.1e-05 Score=61.80 Aligned_cols=100 Identities=16% Similarity=0.196 Sum_probs=68.8
Q ss_pred cEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCCCCCC
Q 038343 25 SCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESGLSAF 104 (191)
Q Consensus 25 ~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~~~~~ 104 (191)
.|||+|.|||++++++++.|+.+|++.+.=..|.+.+++....|+.. .+|.++.-.-.+... ....
T Consensus 69 ~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kng~S------------dkI~vInkrStev~v--g~~~ 134 (636)
T KOG1501|consen 69 FVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNGMS------------DKINVINKRSTEVKV--GGSS 134 (636)
T ss_pred EEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhcCCCc------------cceeeeccccceeee--cCcc
Confidence 68999999999999999999999999998788999999999988865 445554432211110 0112
Q ss_pred CCCEEEEccccc---CCCChHHHHHHHHHHhccCCCC
Q 038343 105 VPEIILGADILY---DRSCFPDLVRILAILLNRRKSV 138 (191)
Q Consensus 105 ~fDvIi~~d~ly---~~~~~~~ll~~l~~ll~~~g~~ 138 (191)
+.|+++..+..- -...++.+-.....|++++.+.
T Consensus 135 RadI~v~e~fdtEligeGalps~qhAh~~L~~~nc~~ 171 (636)
T KOG1501|consen 135 RADIAVREDFDTELIGEGALPSLQHAHDMLLVDNCKT 171 (636)
T ss_pred hhhhhhHhhhhhhhhccccchhHHHHHHHhcccCCee
Confidence 356666543322 1234666667777788888543
|
|
| >PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00045 Score=54.94 Aligned_cols=94 Identities=16% Similarity=0.183 Sum_probs=56.4
Q ss_pred CCCCCcEEEeCCCccHHHHHHHhc--CCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCC
Q 038343 20 IFSNKSCFEVGSGVGLVGICLAHV--KASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESAS 97 (191)
Q Consensus 20 ~~~~~~VLElG~GtG~~~~~la~~--g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~ 97 (191)
.+...+|||+|||+|.....+... ...+++++|.++.+++..+.-++... .. ....|....
T Consensus 31 ~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~-~~----------------~~~~~~~~~ 93 (274)
T PF09243_consen 31 DFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGP-NN----------------RNAEWRRVL 93 (274)
T ss_pred CCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhccc-cc----------------ccchhhhhh
Confidence 456779999999999655443332 23589999999999998877554322 10 000111110
Q ss_pred c-CCCCCCCCCEEEEcccccCCCChHHHHHHHHHH
Q 038343 98 E-SGLSAFVPEIILGADILYDRSCFPDLVRILAIL 131 (191)
Q Consensus 98 ~-~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~l 131 (191)
. ...+-...|+|+++.++-.... +...+.++.+
T Consensus 94 ~~~~~~~~~~DLvi~s~~L~EL~~-~~r~~lv~~L 127 (274)
T PF09243_consen 94 YRDFLPFPPDDLVIASYVLNELPS-AARAELVRSL 127 (274)
T ss_pred hcccccCCCCcEEEEehhhhcCCc-hHHHHHHHHH
Confidence 0 0011123599999999987766 5445555554
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation |
| >PF13679 Methyltransf_32: Methyltransferase domain | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00019 Score=51.29 Aligned_cols=49 Identities=18% Similarity=0.190 Sum_probs=40.5
Q ss_pred CCCCcEEEeCCCccHHHHHHHh-----cCCCeEEEEcCChHHHHHHHHHHHHhc
Q 038343 21 FSNKSCFEVGSGVGLVGICLAH-----VKASKVTLTDGDHLTLANMRSNLELNQ 69 (191)
Q Consensus 21 ~~~~~VLElG~GtG~~~~~la~-----~g~~~v~~tD~~~~~l~~~~~n~~~n~ 69 (191)
.+...|+|+|||.|.++..++. ....+|+++|.++..++.+.+..+..+
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~ 77 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLG 77 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhc
Confidence 4667999999999999998888 333499999999999888887766655
|
|
| >KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown] | Back alignment and domain information |
|---|
Probab=97.64 E-value=1.1e-05 Score=60.73 Aligned_cols=94 Identities=14% Similarity=0.173 Sum_probs=71.3
Q ss_pred CCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCCC
Q 038343 22 SNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESGL 101 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~~ 101 (191)
...++||||+|.|-++..++..- .+|++|+.|..|...+++. .-| ....++|.+..
T Consensus 112 ~~~~lLDlGAGdGeit~~m~p~f-eevyATElS~tMr~rL~kk-~yn------------------Vl~~~ew~~t~---- 167 (288)
T KOG3987|consen 112 EPVTLLDLGAGDGEITLRMAPTF-EEVYATELSWTMRDRLKKK-NYN------------------VLTEIEWLQTD---- 167 (288)
T ss_pred CCeeEEeccCCCcchhhhhcchH-HHHHHHHhhHHHHHHHhhc-CCc------------------eeeehhhhhcC----
Confidence 34689999999999988877763 4899999999888777642 111 12356675432
Q ss_pred CCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCccc
Q 038343 102 SAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVSSS 141 (191)
Q Consensus 102 ~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~~~ 141 (191)
-+||+|.|-.++-.-.+.-.+++.|+.+|+|..+..++
T Consensus 168 --~k~dli~clNlLDRc~~p~kLL~Di~~vl~psngrviv 205 (288)
T KOG3987|consen 168 --VKLDLILCLNLLDRCFDPFKLLEDIHLVLAPSNGRVIV 205 (288)
T ss_pred --ceeehHHHHHHHHhhcChHHHHHHHHHHhccCCCcEEE
Confidence 47999999999888888999999999999996444433
|
|
| >KOG2730 consensus Methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.63 E-value=3.3e-05 Score=58.55 Aligned_cols=100 Identities=16% Similarity=0.045 Sum_probs=74.1
Q ss_pred CCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCC-C
Q 038343 23 NKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESG-L 101 (191)
Q Consensus 23 ~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~-~ 101 (191)
-..|+|..||.|-..+..+..++ .|+++|++|.-+..+++|++..++. .+|.+++.||-+..... +
T Consensus 95 ~~~iidaf~g~gGntiqfa~~~~-~VisIdiDPikIa~AkhNaeiYGI~------------~rItFI~GD~ld~~~~lq~ 161 (263)
T KOG2730|consen 95 AEVIVDAFCGVGGNTIQFALQGP-YVIAIDIDPVKIACARHNAEVYGVP------------DRITFICGDFLDLASKLKA 161 (263)
T ss_pred cchhhhhhhcCCchHHHHHHhCC-eEEEEeccHHHHHHHhccceeecCC------------ceeEEEechHHHHHHHHhh
Confidence 34799999999988887777777 8999999999999999999999987 58999999997654321 2
Q ss_pred CCCCCCEEEEcccccCCCChHHHHHHHHHHhccC
Q 038343 102 SAFVPEIILGADILYDRSCFPDLVRILAILLNRR 135 (191)
Q Consensus 102 ~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~ 135 (191)
....+|+|..+...-.+.....-+-.|...+.|.
T Consensus 162 ~K~~~~~vf~sppwggp~y~~~~~~DL~~~~~p~ 195 (263)
T KOG2730|consen 162 DKIKYDCVFLSPPWGGPSYLRADVYDLETHLKPM 195 (263)
T ss_pred hhheeeeeecCCCCCCcchhhhhhhhhhhhcchh
Confidence 2335778887666555554444444555555554
|
|
| >KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00041 Score=53.03 Aligned_cols=103 Identities=14% Similarity=0.129 Sum_probs=73.4
Q ss_pred CCCCCcEEEeCCCccHHHHHHHhc--CCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCC
Q 038343 20 IFSNKSCFEVGSGVGLVGICLAHV--KASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESAS 97 (191)
Q Consensus 20 ~~~~~~VLElG~GtG~~~~~la~~--g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~ 97 (191)
.+..+++||||.=||..++..|.. ...+|++.|+++...+...+-++..+.. .+|.++...-.+..
T Consensus 71 ~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~------------~KI~~i~g~a~esL 138 (237)
T KOG1663|consen 71 LLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVD------------HKITFIEGPALESL 138 (237)
T ss_pred HhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhcccc------------ceeeeeecchhhhH
Confidence 346779999999999777755543 1238999999999999998887777755 56666665543322
Q ss_pred cC---CCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCC
Q 038343 98 ES---GLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKS 137 (191)
Q Consensus 98 ~~---~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~ 137 (191)
.+ ..+.+.||+++. | .+..+.......+-+|+|+||-
T Consensus 139 d~l~~~~~~~tfDfaFv-D--adK~nY~~y~e~~l~Llr~GGv 178 (237)
T KOG1663|consen 139 DELLADGESGTFDFAFV-D--ADKDNYSNYYERLLRLLRVGGV 178 (237)
T ss_pred HHHHhcCCCCceeEEEE-c--cchHHHHHHHHHHHhhcccccE
Confidence 11 124568999986 2 2445566788888999999973
|
|
| >PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.0015 Score=51.57 Aligned_cols=115 Identities=13% Similarity=0.077 Sum_probs=72.3
Q ss_pred CCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCC------ccccc-----------c-----
Q 038343 22 SNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTD------TSLLE-----------S----- 79 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~------~~~~~-----------~----- 79 (191)
.+.+||==|||.|-++.-+|++|. .+.+.|.|-.|+-.. +.-.|..... +.... +
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~G~-~~~gnE~S~~Mll~s--~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iP 132 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKLGY-AVQGNEFSYFMLLAS--NFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIP 132 (270)
T ss_pred CccEEEEcCCCcchHHHHHhhccc-eEEEEEchHHHHHHH--HHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeC
Confidence 456899999999999999999998 899999987776443 3333431110 00000 0
Q ss_pred -------cCCCCeeEEEeecCCCCCcCCCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCc
Q 038343 80 -------YEDPNVVQCVHLPWESASESGLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVS 139 (191)
Q Consensus 80 -------~~~~~~i~~~~ldw~~~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~ 139 (191)
.....++.....|+.+........++||.|+.+--|--..++-..+++|.++|||||...
T Consensus 133 Dv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA~Ni~~Yi~tI~~lLkpgG~WI 199 (270)
T PF07942_consen 133 DVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTAENIIEYIETIEHLLKPGGYWI 199 (270)
T ss_pred CcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeechHHHHHHHHHHHHHhccCCEEE
Confidence 011234555555554333222224689999986222234456777999999999998554
|
This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions []. |
| >PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00038 Score=52.97 Aligned_cols=73 Identities=16% Similarity=0.116 Sum_probs=50.7
Q ss_pred EEEeCCCccHHHHHHHhcCCC-eEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCCCCCC
Q 038343 26 CFEVGSGVGLVGICLAHVKAS-KVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESGLSAF 104 (191)
Q Consensus 26 VLElG~GtG~~~~~la~~g~~-~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~~~~~ 104 (191)
|.|+||--|.+++.+.+.|.. +++++|+++..++.+++|++.+++. .++.+...|=-.. ++.+
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~------------~~i~~rlgdGL~~----l~~~ 64 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLE------------DRIEVRLGDGLEV----LKPG 64 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-T------------TTEEEEE-SGGGG------GG
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCc------------ccEEEEECCcccc----cCCC
Confidence 689999999999999988754 8999999999999999999998865 4566666552111 2222
Q ss_pred -CCCEEEEccc
Q 038343 105 -VPEIILGADI 114 (191)
Q Consensus 105 -~fDvIi~~d~ 114 (191)
..|.|+.+.+
T Consensus 65 e~~d~ivIAGM 75 (205)
T PF04816_consen 65 EDVDTIVIAGM 75 (205)
T ss_dssp G---EEEEEEE
T ss_pred CCCCEEEEecC
Confidence 2677776543
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B. |
| >PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2 | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00034 Score=56.46 Aligned_cols=120 Identities=11% Similarity=0.087 Sum_probs=68.8
Q ss_pred HHHHHhhCCCCCCCCcEEEeCCCccHHHHHHHh--------cCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccC
Q 038343 10 LSEFILSFPEIFSNKSCFEVGSGVGLVGICLAH--------VKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYE 81 (191)
Q Consensus 10 L~~~l~~~~~~~~~~~VLElG~GtG~~~~~la~--------~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~ 81 (191)
+++++.......++.+|+|-.||+|.+-+.+.+ ....++++.|+++.++..++.|+..++....
T Consensus 34 i~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~-------- 105 (311)
T PF02384_consen 34 IVDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNS-------- 105 (311)
T ss_dssp HHHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCB--------
T ss_pred HHHHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccc--------
Confidence 444444433334566899999999977665444 1334899999999999999999877764421
Q ss_pred CCCeeEEEeecCCCCCcCCCCCCCCCEEEEcccccCC--C-------------------ChHHHHHHHHHHhccCCCCcc
Q 038343 82 DPNVVQCVHLPWESASESGLSAFVPEIILGADILYDR--S-------------------CFPDLVRILAILLNRRKSVSS 140 (191)
Q Consensus 82 ~~~~i~~~~ldw~~~~~~~~~~~~fDvIi~~d~ly~~--~-------------------~~~~ll~~l~~ll~~~g~~~~ 140 (191)
...+...|.-.... .....+||+|+++.++-.. . ..-.++....+.|+++|+...
T Consensus 106 ---~~~i~~~d~l~~~~-~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~ 181 (311)
T PF02384_consen 106 ---NINIIQGDSLENDK-FIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAI 181 (311)
T ss_dssp ---GCEEEES-TTTSHS-CTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEE
T ss_pred ---cccccccccccccc-cccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeE
Confidence 12334444321111 1123579999986554322 0 011467777888899886554
Q ss_pred c
Q 038343 141 S 141 (191)
Q Consensus 141 ~ 141 (191)
+
T Consensus 182 I 182 (311)
T PF02384_consen 182 I 182 (311)
T ss_dssp E
T ss_pred E
Confidence 3
|
1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B. |
| >TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00054 Score=59.35 Aligned_cols=48 Identities=15% Similarity=0.103 Sum_probs=37.6
Q ss_pred CCCcEEEeCCCccHHHHHHHhcC---------CCeEEEEcCChHHHHHHHHHHHHhc
Q 038343 22 SNKSCFEVGSGVGLVGICLAHVK---------ASKVTLTDGDHLTLANMRSNLELNQ 69 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~g---------~~~v~~tD~~~~~l~~~~~n~~~n~ 69 (191)
...+|||.+||+|.+.+.++... ...+++.|+++.++..++.|+...+
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~ 87 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFA 87 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcC
Confidence 34589999999997777554321 1378999999999999999887654
|
Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted. |
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00089 Score=57.75 Aligned_cols=104 Identities=14% Similarity=0.027 Sum_probs=70.7
Q ss_pred CCCcEEEeCCCccHHHHHHHhcCC-CeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCC
Q 038343 22 SNKSCFEVGSGVGLVGICLAHVKA-SKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESG 100 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~g~-~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~ 100 (191)
.+..+||||||.|-..+.+|...+ ..++++|+....+..+.+.+...++. ++.+...++... ...
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~-------------N~~~~~~~~~~~-~~~ 412 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNIT-------------NFLLFPNNLDLI-LND 412 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCC-------------eEEEEcCCHHHH-HHh
Confidence 355899999999987777776644 48999999888887777666665543 455555443211 122
Q ss_pred CCCCCCCEEEE--cccccCCC------ChHHHHHHHHHHhccCCCCc
Q 038343 101 LSAFVPEIILG--ADILYDRS------CFPDLVRILAILLNRRKSVS 139 (191)
Q Consensus 101 ~~~~~fDvIi~--~d~ly~~~------~~~~ll~~l~~ll~~~g~~~ 139 (191)
++++++|-|.. .|...... ..+.+++.+.++|+|||...
T Consensus 413 ~~~~sv~~i~i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~ 459 (506)
T PRK01544 413 LPNNSLDGIYILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLV 459 (506)
T ss_pred cCcccccEEEEECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEE
Confidence 45567888765 44443221 36789999999999997544
|
|
| >PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.001 Score=50.64 Aligned_cols=103 Identities=14% Similarity=-0.053 Sum_probs=66.7
Q ss_pred ccHHHHHHHHhhCCCCC----CCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCccccccc
Q 038343 5 PSSLLLSEFILSFPEIF----SNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESY 80 (191)
Q Consensus 5 ~~a~~L~~~l~~~~~~~----~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~ 80 (191)
+++.+|.+|+....... ...++||+||=+.-... +..+.-.|+.+|+++.
T Consensus 30 dSSK~lv~wL~~~~~~~~~~~~~lrlLEVGals~~N~~--s~~~~fdvt~IDLns~------------------------ 83 (219)
T PF11968_consen 30 DSSKWLVEWLKELGVRPKNGRPKLRLLEVGALSTDNAC--STSGWFDVTRIDLNSQ------------------------ 83 (219)
T ss_pred chhHHHHHHhhhhccccccccccceEEeecccCCCCcc--cccCceeeEEeecCCC------------------------
Confidence 47889999987643222 23699999987543222 2233336999998641
Q ss_pred CCCCeeEEEeecCCCCCcCCCCCCCCCEEEEcccccCCCC---hHHHHHHHHHHhccCCC
Q 038343 81 EDPNVVQCVHLPWESASESGLSAFVPEIILGADILYDRSC---FPDLVRILAILLNRRKS 137 (191)
Q Consensus 81 ~~~~~i~~~~ldw~~~~~~~~~~~~fDvIi~~d~ly~~~~---~~~ll~~l~~ll~~~g~ 137 (191)
.-.+.+.|+-+.+....+.++||+|.+|=|+-+.++ ....++...++|+++|.
T Consensus 84 ----~~~I~qqDFm~rplp~~~~e~FdvIs~SLVLNfVP~p~~RG~Ml~r~~~fL~~~g~ 139 (219)
T PF11968_consen 84 ----HPGILQQDFMERPLPKNESEKFDVISLSLVLNFVPDPKQRGEMLRRAHKFLKPPGL 139 (219)
T ss_pred ----CCCceeeccccCCCCCCcccceeEEEEEEEEeeCCCHHHHHHHHHHHHHHhCCCCc
Confidence 112345555443222224568999999999987665 45678888889999987
|
|
| >COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0058 Score=42.51 Aligned_cols=99 Identities=17% Similarity=0.088 Sum_probs=60.4
Q ss_pred EEEeCCCccHHHHHHHhcCC--CeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCCCCC
Q 038343 26 CFEVGSGVGLVGICLAHVKA--SKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESGLSA 103 (191)
Q Consensus 26 VLElG~GtG~~~~~la~~g~--~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~~~~ 103 (191)
++|+|||+|... .+..... ..++++|.++.++...+..... ... ..+.+...++... ...+..
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~~------------~~~~~~~~~~~~~-~~~~~~ 116 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEG-AGL------------GLVDFVVADALGG-VLPFED 116 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhh-cCC------------CceEEEEeccccC-CCCCCC
Confidence 999999999765 3344322 2788899999888874433322 111 0134444444331 011222
Q ss_pred -CCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCcc
Q 038343 104 -FVPEIILGADILYDRSCFPDLVRILAILLNRRKSVSS 140 (191)
Q Consensus 104 -~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~~ 140 (191)
..||++......+... ...++..+.+.++++|....
T Consensus 117 ~~~~d~~~~~~~~~~~~-~~~~~~~~~~~l~~~g~~~~ 153 (257)
T COG0500 117 SASFDLVISLLVLHLLP-PAKALRELLRVLKPGGRLVL 153 (257)
T ss_pred CCceeEEeeeeehhcCC-HHHHHHHHHHhcCCCcEEEE
Confidence 3799994443433344 88999999999999765443
|
|
| >PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.00025 Score=55.66 Aligned_cols=121 Identities=12% Similarity=0.038 Sum_probs=68.4
Q ss_pred CCCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcC-CCCccc------c-ccc-------CCC
Q 038343 19 EIFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQL-STDTSL------L-ESY-------EDP 83 (191)
Q Consensus 19 ~~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~-~~~~~~------~-~~~-------~~~ 83 (191)
...+|.++||+|||+-+..+..+.....+++++|+.+..++.+++-++..+. +-.... . ... ...
T Consensus 53 g~~~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR 132 (256)
T PF01234_consen 53 GGVKGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLR 132 (256)
T ss_dssp SSS-EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHH
T ss_pred cCcCCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHH
Confidence 3456789999999987665544444466999999999999888876543211 000000 0 000 001
Q ss_pred CeeE-EEeecCCCCCcCCC---CCCCCCEEEEccccc----CCCChHHHHHHHHHHhccCCCCc
Q 038343 84 NVVQ-CVHLPWESASESGL---SAFVPEIILGADILY----DRSCFPDLVRILAILLNRRKSVS 139 (191)
Q Consensus 84 ~~i~-~~~ldw~~~~~~~~---~~~~fDvIi~~d~ly----~~~~~~~ll~~l~~ll~~~g~~~ 139 (191)
..|+ +...|..+..+-.. ...+||+|+++-|+. +.+.+...++.+.++|||||...
T Consensus 133 ~~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Li 196 (256)
T PF01234_consen 133 RAVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLI 196 (256)
T ss_dssp HHEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEE
T ss_pred HhhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEE
Confidence 1222 44455544332211 123599999987776 34557778888999999998544
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A .... |
| >PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ] | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0096 Score=45.60 Aligned_cols=114 Identities=9% Similarity=-0.005 Sum_probs=65.3
Q ss_pred HHHHHHhhC---CCCCCCCcEEEeCCCccHHHHHHHhc-C-CCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCC
Q 038343 9 LLSEFILSF---PEIFSNKSCFEVGSGVGLVGICLAHV-K-ASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDP 83 (191)
Q Consensus 9 ~L~~~l~~~---~~~~~~~~VLElG~GtG~~~~~la~~-g-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~ 83 (191)
.|+..+... ....+|.+||=||+.+|.+--.++.. | ...|++++.++...+.+-.-++..
T Consensus 57 KLaAai~~Gl~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R--------------- 121 (229)
T PF01269_consen 57 KLAAAILKGLENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR--------------- 121 (229)
T ss_dssp HHHHHHHTT-S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS---------------
T ss_pred HHHHHHHcCccccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC---------------
Confidence 344444432 33457889999999999665555543 4 248999999998876665333322
Q ss_pred CeeEEEeecCCCCCcCCCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCc
Q 038343 84 NVVQCVHLPWESASESGLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVS 139 (191)
Q Consensus 84 ~~i~~~~ldw~~~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~ 139 (191)
.++--.--|-..+..=...-+..|+|++ |+- .+...+-+....+.+||++|...
T Consensus 122 ~NIiPIl~DAr~P~~Y~~lv~~VDvI~~-DVa-Qp~Qa~I~~~Na~~fLk~gG~~~ 175 (229)
T PF01269_consen 122 PNIIPILEDARHPEKYRMLVEMVDVIFQ-DVA-QPDQARIAALNARHFLKPGGHLI 175 (229)
T ss_dssp TTEEEEES-TTSGGGGTTTS--EEEEEE-E-S-STTHHHHHHHHHHHHEEEEEEEE
T ss_pred CceeeeeccCCChHHhhcccccccEEEe-cCC-ChHHHHHHHHHHHhhccCCcEEE
Confidence 1233233332222110111236788776 553 45667888899999999997543
|
It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A .... |
| >COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.004 Score=47.13 Aligned_cols=108 Identities=13% Similarity=0.045 Sum_probs=67.8
Q ss_pred cHHHHHHHHhhCCCCCCCCcEEEeCCCccHHHHHHHhcCCC--eEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCC
Q 038343 6 SSLLLSEFILSFPEIFSNKSCFEVGSGVGLVGICLAHVKAS--KVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDP 83 (191)
Q Consensus 6 ~a~~L~~~l~~~~~~~~~~~VLElG~GtG~~~~~la~~g~~--~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~ 83 (191)
++..|.+...++.-..++.+|+||||-.|..+.++++.... .|+++|+.|-- . .
T Consensus 29 Aa~KL~el~~k~~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~-----------~-------------~ 84 (205)
T COG0293 29 AAYKLLELNEKFKLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMK-----------P-------------I 84 (205)
T ss_pred HHHHHHHHHHhcCeecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccc-----------c-------------C
Confidence 46667666666633446789999999999999988875332 49999996521 1 1
Q ss_pred CeeEEEeecCCCCCcC-----CCCCCCCCEEEEcccccCC------------CChHHHHHHHHHHhccCCCC
Q 038343 84 NVVQCVHLPWESASES-----GLSAFVPEIILGADILYDR------------SCFPDLVRILAILLNRRKSV 138 (191)
Q Consensus 84 ~~i~~~~ldw~~~~~~-----~~~~~~fDvIi~~d~ly~~------------~~~~~ll~~l~~ll~~~g~~ 138 (191)
..+.+.+.|....... .+...++|+|++ |.--.. ......+.....+|+++|..
T Consensus 85 ~~V~~iq~d~~~~~~~~~l~~~l~~~~~DvV~s-D~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~f 155 (205)
T COG0293 85 PGVIFLQGDITDEDTLEKLLEALGGAPVDVVLS-DMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSF 155 (205)
T ss_pred CCceEEeeeccCccHHHHHHHHcCCCCcceEEe-cCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeE
Confidence 2366777777655321 133445799885 332211 12344566666788888753
|
|
| >PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0049 Score=46.77 Aligned_cols=91 Identities=16% Similarity=0.143 Sum_probs=50.2
Q ss_pred HHHHHhhCCCCCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEE
Q 038343 10 LSEFILSFPEIFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCV 89 (191)
Q Consensus 10 L~~~l~~~~~~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~ 89 (191)
..+||...+ +...|-|+|||.+.++..+. .+. +|...|.-. .|. .+.
T Consensus 63 iI~~l~~~~---~~~viaD~GCGdA~la~~~~-~~~-~V~SfDLva-----------~n~-----------------~Vt 109 (219)
T PF05148_consen 63 IIEWLKKRP---KSLVIADFGCGDAKLAKAVP-NKH-KVHSFDLVA-----------PNP-----------------RVT 109 (219)
T ss_dssp HHHHHCTS----TTS-EEEES-TT-HHHHH---S----EEEEESS------------SST-----------------TEE
T ss_pred HHHHHHhcC---CCEEEEECCCchHHHHHhcc-cCc-eEEEeeccC-----------CCC-----------------CEE
Confidence 445554333 45689999999998875433 222 688888732 121 234
Q ss_pred eecCCCCCcCCCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCC
Q 038343 90 HLPWESASESGLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKS 137 (191)
Q Consensus 90 ~ldw~~~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~ 137 (191)
..|..+.+ +++++.|++|.+=.+.. .++...++...++||++|.
T Consensus 110 acdia~vP---L~~~svDv~VfcLSLMG-Tn~~~fi~EA~RvLK~~G~ 153 (219)
T PF05148_consen 110 ACDIANVP---LEDESVDVAVFCLSLMG-TNWPDFIREANRVLKPGGI 153 (219)
T ss_dssp ES-TTS-S-----TT-EEEEEEES---S-S-HHHHHHHHHHHEEEEEE
T ss_pred EecCccCc---CCCCceeEEEEEhhhhC-CCcHHHHHHHHheeccCcE
Confidence 45554332 45678999998554444 4689999999999999973
|
; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B. |
| >KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0023 Score=52.75 Aligned_cols=104 Identities=13% Similarity=0.080 Sum_probs=74.8
Q ss_pred CCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCC
Q 038343 21 FSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESG 100 (191)
Q Consensus 21 ~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~ 100 (191)
.++..++++|||.|-+..+.+..+...+++.|.++.-+...........+.. +..+..-+..+. .
T Consensus 109 ~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~------------k~~~~~~~~~~~---~ 173 (364)
T KOG1269|consen 109 FPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDN------------KCNFVVADFGKM---P 173 (364)
T ss_pred cccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhh------------hcceehhhhhcC---C
Confidence 4566899999999999988888776689999998766654443332222221 111212222221 2
Q ss_pred CCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCc
Q 038343 101 LSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVS 139 (191)
Q Consensus 101 ~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~ 139 (191)
++++.||.+-+.|+..+.+....+++.+.+.++|||..+
T Consensus 174 fedn~fd~v~~ld~~~~~~~~~~~y~Ei~rv~kpGG~~i 212 (364)
T KOG1269|consen 174 FEDNTFDGVRFLEVVCHAPDLEKVYAEIYRVLKPGGLFI 212 (364)
T ss_pred CCccccCcEEEEeecccCCcHHHHHHHHhcccCCCceEE
Confidence 456789999999999999999999999999999998766
|
|
| >COG2384 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.023 Score=43.37 Aligned_cols=76 Identities=17% Similarity=0.042 Sum_probs=58.6
Q ss_pred CCcEEEeCCCccHHHHHHHhcC-CCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCCC
Q 038343 23 NKSCFEVGSGVGLVGICLAHVK-ASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESGL 101 (191)
Q Consensus 23 ~~~VLElG~GtG~~~~~la~~g-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~~ 101 (191)
+.++.|+||--|.+..++.+.+ ++.+++.|.++..++.+.+|++.+++. .++++..+|--... -
T Consensus 17 ~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~------------~~i~vr~~dgl~~l---~ 81 (226)
T COG2384 17 GARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLS------------ERIDVRLGDGLAVL---E 81 (226)
T ss_pred CCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCc------------ceEEEeccCCcccc---C
Confidence 4469999999999999887765 458999999999999999999999876 56777777643221 1
Q ss_pred CCCCCCEEEEcc
Q 038343 102 SAFVPEIILGAD 113 (191)
Q Consensus 102 ~~~~fDvIi~~d 113 (191)
.+..+|+|+.+.
T Consensus 82 ~~d~~d~ivIAG 93 (226)
T COG2384 82 LEDEIDVIVIAG 93 (226)
T ss_pred ccCCcCEEEEeC
Confidence 223688887654
|
|
| >TIGR03439 methyl_EasF probable methyltransferase domain, EasF family | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.012 Score=47.74 Aligned_cols=106 Identities=19% Similarity=0.118 Sum_probs=63.0
Q ss_pred CCCcEEEeCCCccH-HHHHHHhc---C-CCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCC
Q 038343 22 SNKSCFEVGSGVGL-VGICLAHV---K-ASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESA 96 (191)
Q Consensus 22 ~~~~VLElG~GtG~-~~~~la~~---g-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~ 96 (191)
++..++|||||.|. +.+.+..+ + ...|+.+|+|.++|+.+..++....... -.+.-...|+.+.
T Consensus 76 ~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~-----------l~v~~l~gdy~~~ 144 (319)
T TIGR03439 76 SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSH-----------VRCAGLLGTYDDG 144 (319)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCC-----------eEEEEEEecHHHH
Confidence 45589999999994 44444333 1 2379999999999999988887222210 1233234444332
Q ss_pred Cc---CCCCCCCCCEEEE-cccccCC--CChHHHHHHHHH-HhccCCCC
Q 038343 97 SE---SGLSAFVPEIILG-ADILYDR--SCFPDLVRILAI-LLNRRKSV 138 (191)
Q Consensus 97 ~~---~~~~~~~fDvIi~-~d~ly~~--~~~~~ll~~l~~-ll~~~g~~ 138 (191)
.. .........+|+. ...|-+. .....+|+.+++ .|+|++..
T Consensus 145 l~~l~~~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~l 193 (319)
T TIGR03439 145 LAWLKRPENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSF 193 (319)
T ss_pred HhhcccccccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEE
Confidence 11 0001123566654 3366544 445577888988 89998653
|
This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781). |
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.00048 Score=58.27 Aligned_cols=92 Identities=12% Similarity=0.118 Sum_probs=55.1
Q ss_pred cEEEeCCCccHHHHHHHhcCCCeEEEE--cCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCCCC
Q 038343 25 SCFEVGSGVGLVGICLAHVKASKVTLT--DGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESGLS 102 (191)
Q Consensus 25 ~VLElG~GtG~~~~~la~~g~~~v~~t--D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~~~ 102 (191)
.+||+|||+|.+|..+...+.-.+... |..+..++.+. ..++.. .+.+ .+. ..-.++
T Consensus 120 ~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfal----eRGvpa------------~~~~----~~s-~rLPfp 178 (506)
T PF03141_consen 120 TALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFAL----ERGVPA------------MIGV----LGS-QRLPFP 178 (506)
T ss_pred EEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhh----hcCcch------------hhhh----hcc-ccccCC
Confidence 689999999999998888865222211 33222222221 122210 0100 000 011256
Q ss_pred CCCCCEEEEcccccC-CCChHHHHHHHHHHhccCCC
Q 038343 103 AFVPEIILGADILYD-RSCFPDLVRILAILLNRRKS 137 (191)
Q Consensus 103 ~~~fDvIi~~d~ly~-~~~~~~ll~~l~~ll~~~g~ 137 (191)
++.||+|-|+.|+-. ...-.-++-.+.++|+|||.
T Consensus 179 ~~~fDmvHcsrc~i~W~~~~g~~l~evdRvLRpGGy 214 (506)
T PF03141_consen 179 SNAFDMVHCSRCLIPWHPNDGFLLFEVDRVLRPGGY 214 (506)
T ss_pred ccchhhhhcccccccchhcccceeehhhhhhccCce
Confidence 788999999998863 33345688999999999985
|
; GO: 0008168 methyltransferase activity |
| >PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.0077 Score=48.13 Aligned_cols=50 Identities=14% Similarity=0.157 Sum_probs=40.1
Q ss_pred CCCcEEEeCCCccHHHHHHHhc-C-CCeEEEEcCChHHHHHHHHHHHHhcCC
Q 038343 22 SNKSCFEVGSGVGLVGICLAHV-K-ASKVTLTDGDHLTLANMRSNLELNQLS 71 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~-g-~~~v~~tD~~~~~l~~~~~n~~~n~~~ 71 (191)
++.+|||+.++.|.=+..++.+ + ...+++.|+++.-+..++.|++..+..
T Consensus 85 ~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~ 136 (283)
T PF01189_consen 85 PGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVF 136 (283)
T ss_dssp TTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-S
T ss_pred ccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCc
Confidence 6778999999999665554443 3 359999999999999999999988754
|
In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A .... |
| >PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.0028 Score=46.97 Aligned_cols=52 Identities=17% Similarity=0.151 Sum_probs=40.3
Q ss_pred ccHHHHHHHHhhCCCCC--CCCcEEEeCCCccHHHHHHHhcC--CCeEEEEcCChH
Q 038343 5 PSSLLLSEFILSFPEIF--SNKSCFEVGSGVGLVGICLAHVK--ASKVTLTDGDHL 56 (191)
Q Consensus 5 ~~a~~L~~~l~~~~~~~--~~~~VLElG~GtG~~~~~la~~g--~~~v~~tD~~~~ 56 (191)
.++..|.+......-.. ++.+||||||++|..+.++.+.+ ..+|+++|..+.
T Consensus 4 Ra~~KL~ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~ 59 (181)
T PF01728_consen 4 RAAFKLYEIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM 59 (181)
T ss_dssp THHHHHHHHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST
T ss_pred HHHHHHHHHHHHCCCCCcccccEEEEcCCcccceeeeeeecccccceEEEEecccc
Confidence 46788888887766222 34799999999999999988887 459999999754
|
RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A .... |
| >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.016 Score=49.05 Aligned_cols=110 Identities=14% Similarity=0.122 Sum_probs=74.0
Q ss_pred CcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCCCCC
Q 038343 24 KSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESGLSA 103 (191)
Q Consensus 24 ~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~~~~ 103 (191)
.++|.+|||.--+...+-+-|...++.+|+|+.++..+... |... ...+.+...|... ..+++
T Consensus 50 ~~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~---~~~~-----------~~~~~~~~~d~~~---l~fed 112 (482)
T KOG2352|consen 50 FKILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVR---NAKE-----------RPEMQMVEMDMDQ---LVFED 112 (482)
T ss_pred ceeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhc---cccC-----------CcceEEEEecchh---ccCCC
Confidence 38999999999888888888888999999999888766532 2111 0234445554432 23566
Q ss_pred CCCCEEEEc---cc-------ccCCCChHHHHHHHHHHhccCCCCccccc---cCCCCcc
Q 038343 104 FVPEIILGA---DI-------LYDRSCFPDLVRILAILLNRRKSVSSSRK---ESSKGFT 150 (191)
Q Consensus 104 ~~fDvIi~~---d~-------ly~~~~~~~ll~~l~~ll~~~g~~~~~~~---~~~~~~~ 150 (191)
.+||+||.= |. +++......-+..+.++++++|+-..+.. .|.....
T Consensus 113 ESFdiVIdkGtlDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl~~~vp~~r~~ 172 (482)
T KOG2352|consen 113 ESFDIVIDKGTLDALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTLVQVVPQGRKP 172 (482)
T ss_pred cceeEEEecCccccccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEeeeeccCCCCe
Confidence 789999862 22 22233455667889999999998776665 5553333
|
|
| >cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.0055 Score=48.77 Aligned_cols=42 Identities=14% Similarity=0.189 Sum_probs=37.1
Q ss_pred cEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHH
Q 038343 25 SCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLE 66 (191)
Q Consensus 25 ~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~ 66 (191)
+|+||.||.|..+.-+.+.|...+.++|+++.+++..+.|..
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~ 43 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFP 43 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCC
Confidence 699999999999888888888789999999999988887753
|
Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. |
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.025 Score=44.96 Aligned_cols=98 Identities=17% Similarity=0.068 Sum_probs=59.6
Q ss_pred CcEEEeCCCcc-HHHHHHHhc-CC-CeEEEEcCChHHHHHHHHHHH-HhcCCCCcccccccCCCCeeEEEeecCCCCCcC
Q 038343 24 KSCFEVGSGVG-LVGICLAHV-KA-SKVTLTDGDHLTLANMRSNLE-LNQLSTDTSLLESYEDPNVVQCVHLPWESASES 99 (191)
Q Consensus 24 ~~VLElG~GtG-~~~~~la~~-g~-~~v~~tD~~~~~l~~~~~n~~-~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~ 99 (191)
.+|+=||||.= +.++.+++. +. ..|+..|+++.+.+.+++-+. ..++. .++.+...|-.+...
T Consensus 122 ~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~------------~~m~f~~~d~~~~~~- 188 (276)
T PF03059_consen 122 SRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLS------------KRMSFITADVLDVTY- 188 (276)
T ss_dssp -EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-------------SSEEEEES-GGGG-G-
T ss_pred ceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhccccc------------CCeEEEecchhcccc-
Confidence 59999999954 888888764 22 379999999999999988776 33433 457777766543321
Q ss_pred CCCCCCCCEEEEccccc-CCCChHHHHHHHHHHhccCC
Q 038343 100 GLSAFVPEIILGADILY-DRSCFPDLVRILAILLNRRK 136 (191)
Q Consensus 100 ~~~~~~fDvIi~~d~ly-~~~~~~~ll~~l~~ll~~~g 136 (191)
.-..||+|+.+-.+. ....-..++..+.+.++||.
T Consensus 189 --dl~~~DvV~lAalVg~~~e~K~~Il~~l~~~m~~ga 224 (276)
T PF03059_consen 189 --DLKEYDVVFLAALVGMDAEPKEEILEHLAKHMAPGA 224 (276)
T ss_dssp --G----SEEEE-TT-S----SHHHHHHHHHHHS-TTS
T ss_pred --ccccCCEEEEhhhcccccchHHHHHHHHHhhCCCCc
Confidence 124799998777665 66788999999999999985
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.074 Score=40.25 Aligned_cols=101 Identities=9% Similarity=0.020 Sum_probs=60.6
Q ss_pred CCCCCcEEEeCCCccHHHHHHHh-cCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCc
Q 038343 20 IFSNKSCFEVGSGVGLVGICLAH-VKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASE 98 (191)
Q Consensus 20 ~~~~~~VLElG~GtG~~~~~la~-~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~ 98 (191)
..+|.+||=||+.+|.+--..+. .|...+++++.++.+...+-.-++... ++--.-.|-..+..
T Consensus 74 i~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R~---------------Ni~PIL~DA~~P~~ 138 (231)
T COG1889 74 IKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKRP---------------NIIPILEDARKPEK 138 (231)
T ss_pred cCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhCC---------------CceeeecccCCcHH
Confidence 45788999999999966555554 344579999999988876655443321 22222223222210
Q ss_pred CCCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCC
Q 038343 99 SGLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKS 137 (191)
Q Consensus 99 ~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~ 137 (191)
=..--...|+|+. |+ -.+...+-+....+.+|+++|.
T Consensus 139 Y~~~Ve~VDviy~-DV-AQp~Qa~I~~~Na~~FLk~~G~ 175 (231)
T COG1889 139 YRHLVEKVDVIYQ-DV-AQPNQAEILADNAEFFLKKGGY 175 (231)
T ss_pred hhhhcccccEEEE-ec-CCchHHHHHHHHHHHhcccCCe
Confidence 0001123566554 32 2345577778888999999975
|
|
| >KOG1227 consensus Putative methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.0023 Score=50.91 Aligned_cols=50 Identities=18% Similarity=0.290 Sum_probs=45.7
Q ss_pred CCCcEEEeCCCccHHHH-HHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCC
Q 038343 22 SNKSCFEVGSGVGLVGI-CLAHVKASKVTLTDGDHLTLANMRSNLELNQLS 71 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~-~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~ 71 (191)
.+..|+||.+|.|.+.+ ++.+.|++.|++.|.+|.+++.+++|++.|+..
T Consensus 194 ~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V~ 244 (351)
T KOG1227|consen 194 DGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNVM 244 (351)
T ss_pred ccchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcchH
Confidence 45689999999999998 889999999999999999999999999999743
|
|
| >PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2 | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.0025 Score=52.90 Aligned_cols=97 Identities=16% Similarity=0.097 Sum_probs=62.3
Q ss_pred CCcEEEeCCCccHHHHHHHhc--CCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCC
Q 038343 23 NKSCFEVGSGVGLVGICLAHV--KASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESG 100 (191)
Q Consensus 23 ~~~VLElG~GtG~~~~~la~~--g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~ 100 (191)
+.+|||.=+|||+=|+-.++- +..+|++-|+|+.+++.+++|++.|++.. ..+.+...|-.....
T Consensus 50 ~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~-----------~~~~v~~~DAn~ll~-- 116 (377)
T PF02005_consen 50 PIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLED-----------ERIEVSNMDANVLLY-- 116 (377)
T ss_dssp -EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SG-----------CCEEEEES-HHHHHC--
T ss_pred CceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccC-----------ceEEEehhhHHHHhh--
Confidence 458999999999999954443 55699999999999999999999999773 134554444221110
Q ss_pred CCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCC
Q 038343 101 LSAFVPEIILGADILYDRSCFPDLVRILAILLNRRK 136 (191)
Q Consensus 101 ~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g 136 (191)
.....||+|=. |.+ ....+++...-+.++.+|
T Consensus 117 ~~~~~fD~IDl-DPf---GSp~pfldsA~~~v~~gG 148 (377)
T PF02005_consen 117 SRQERFDVIDL-DPF---GSPAPFLDSALQAVKDGG 148 (377)
T ss_dssp HSTT-EEEEEE---S---S--HHHHHHHHHHEEEEE
T ss_pred hccccCCEEEe-CCC---CCccHhHHHHHHHhhcCC
Confidence 13457888743 332 245678888888888775
|
1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: |
| >KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.028 Score=44.12 Aligned_cols=80 Identities=14% Similarity=0.087 Sum_probs=53.8
Q ss_pred CCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCCC
Q 038343 22 SNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESGL 101 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~~ 101 (191)
....|-|+|||-+-++. .. ...|+..|+-+ .| -++...|+.+.+ +
T Consensus 180 ~~~vIaD~GCGEakiA~---~~-~~kV~SfDL~a-----------~~-----------------~~V~~cDm~~vP---l 224 (325)
T KOG3045|consen 180 KNIVIADFGCGEAKIAS---SE-RHKVHSFDLVA-----------VN-----------------ERVIACDMRNVP---L 224 (325)
T ss_pred CceEEEecccchhhhhh---cc-ccceeeeeeec-----------CC-----------------CceeeccccCCc---C
Confidence 45589999999985543 22 23788888731 12 123445554432 4
Q ss_pred CCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCC
Q 038343 102 SAFVPEIILGADILYDRSCFPDLVRILAILLNRRKS 137 (191)
Q Consensus 102 ~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~ 137 (191)
++.+.|+++.+-.+. -.++..+++...++|++||.
T Consensus 225 ~d~svDvaV~CLSLM-gtn~~df~kEa~RiLk~gG~ 259 (325)
T KOG3045|consen 225 EDESVDVAVFCLSLM-GTNLADFIKEANRILKPGGL 259 (325)
T ss_pred ccCcccEEEeeHhhh-cccHHHHHHHHHHHhccCce
Confidence 667899998754433 35688999999999999974
|
|
| >KOG2078 consensus tRNA modification enzyme [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.0036 Score=52.06 Aligned_cols=50 Identities=20% Similarity=0.300 Sum_probs=46.0
Q ss_pred CCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCC
Q 038343 22 SNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLST 72 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~ 72 (191)
+|..|.|+.||.|-.++.+++.++ .|++-|.++++++.++.|+..|.+..
T Consensus 249 ~gevv~D~FaGvGPfa~Pa~kK~c-rV~aNDLNpesik~Lk~ni~lNkv~~ 298 (495)
T KOG2078|consen 249 PGEVVCDVFAGVGPFALPAAKKGC-RVYANDLNPESIKWLKANIKLNKVDP 298 (495)
T ss_pred CcchhhhhhcCcCccccchhhcCc-EEEecCCCHHHHHHHHHhccccccch
Confidence 677899999999999999999886 99999999999999999999998763
|
|
| >COG3129 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.024 Score=43.71 Aligned_cols=97 Identities=11% Similarity=0.093 Sum_probs=54.8
Q ss_pred HHHHHHhhCCCCC--CCCcEEEeCCCcc-HHHHH-HHhcCCCeEEEEcCChHHHHHHHHHHHHh-cCCCCcccccccCCC
Q 038343 9 LLSEFILSFPEIF--SNKSCFEVGSGVG-LVGIC-LAHVKASKVTLTDGDHLTLANMRSNLELN-QLSTDTSLLESYEDP 83 (191)
Q Consensus 9 ~L~~~l~~~~~~~--~~~~VLElG~GtG-~~~~~-la~~g~~~v~~tD~~~~~l~~~~~n~~~n-~~~~~~~~~~~~~~~ 83 (191)
.|++.|....... ++.++||+|.|.- +.-+. .-..|- +.+++|+++..+..++.++..| ++.
T Consensus 63 ~laDLL~s~~g~~~~~~i~~LDIGvGAnCIYPliG~~eYgw-rfvGseid~~sl~sA~~ii~~N~~l~------------ 129 (292)
T COG3129 63 HLADLLASTSGQIPGKNIRILDIGVGANCIYPLIGVHEYGW-RFVGSEIDSQSLSSAKAIISANPGLE------------ 129 (292)
T ss_pred HHHHHHHhcCCCCCcCceEEEeeccCcccccccccceeecc-eeecCccCHHHHHHHHHHHHcCcchh------------
Confidence 4555554433222 3457888866633 11111 122344 8999999999999999999999 433
Q ss_pred CeeEEEeecC-CCCCcCC-CCCCCCCEEEEcccccCC
Q 038343 84 NVVQCVHLPW-ESASESG-LSAFVPEIILGADILYDR 118 (191)
Q Consensus 84 ~~i~~~~ldw-~~~~~~~-~~~~~fDvIi~~d~ly~~ 118 (191)
..|+...-.- ....... -..+.||+++|+..+|..
T Consensus 130 ~~I~lr~qk~~~~if~giig~nE~yd~tlCNPPFh~s 166 (292)
T COG3129 130 RAIRLRRQKDSDAIFNGIIGKNERYDATLCNPPFHDS 166 (292)
T ss_pred hheeEEeccCccccccccccccceeeeEecCCCcchh
Confidence 1222221110 0000000 123579999999888854
|
|
| >KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.18 Score=42.28 Aligned_cols=101 Identities=10% Similarity=0.085 Sum_probs=65.4
Q ss_pred CCCcEEEeCCCccHHHHHHHh--cCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcC
Q 038343 22 SNKSCFEVGSGVGLVGICLAH--VKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASES 99 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~--~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~ 99 (191)
+|.+|||+.|-.|-=+.++|. .+...|++.|.+..-+..++.|+...+.. +..+...|-.+....
T Consensus 241 ~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~-------------ntiv~n~D~~ef~~~ 307 (460)
T KOG1122|consen 241 PGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVT-------------NTIVSNYDGREFPEK 307 (460)
T ss_pred CCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCC-------------ceEEEccCccccccc
Confidence 788999999998833332222 23347999999999999999999988854 344555554433333
Q ss_pred CCCCCCCCEEEE----cc--cccCCCC----------------hHHHHHHHHHHhccCC
Q 038343 100 GLSAFVPEIILG----AD--ILYDRSC----------------FPDLVRILAILLNRRK 136 (191)
Q Consensus 100 ~~~~~~fDvIi~----~d--~ly~~~~----------------~~~ll~~l~~ll~~~g 136 (191)
.+.. +||-|+. +. +++.+.. ...|+...-+++++||
T Consensus 308 ~~~~-~fDRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GG 365 (460)
T KOG1122|consen 308 EFPG-SFDRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGG 365 (460)
T ss_pred ccCc-ccceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCc
Confidence 3443 8999983 44 6664432 3344555556677764
|
|
| >KOG2671 consensus Putative RNA methylase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.0071 Score=49.09 Aligned_cols=85 Identities=19% Similarity=0.189 Sum_probs=58.2
Q ss_pred CCCCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHH-------HHHHHHHHhcCCCCcccccccCCCCeeEEEe
Q 038343 18 PEIFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLA-------NMRSNLELNQLSTDTSLLESYEDPNVVQCVH 90 (191)
Q Consensus 18 ~~~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~-------~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ 90 (191)
....+|+-|.|=-.|||.+-+.+|..|+ .|+++|++-.++. .++.|.++.+..- .-+.+..
T Consensus 204 Amv~pGdivyDPFVGTGslLvsaa~FGa-~viGtDIDyr~vragrg~~~si~aNFkQYg~~~-----------~fldvl~ 271 (421)
T KOG2671|consen 204 AMVKPGDIVYDPFVGTGSLLVSAAHFGA-YVIGTDIDYRTVRAGRGEDESIKANFKQYGSSS-----------QFLDVLT 271 (421)
T ss_pred hccCCCCEEecCccccCceeeehhhhcc-eeeccccchheeecccCCCcchhHhHHHhCCcc-----------hhhheee
Confidence 3345788999999999988888999998 9999999877775 4556666665331 2244555
Q ss_pred ecCCCCCcCCCCCCCCCEEEEcccccC
Q 038343 91 LPWESASESGLSAFVPEIILGADILYD 117 (191)
Q Consensus 91 ldw~~~~~~~~~~~~fDvIi~~d~ly~ 117 (191)
.|.....- .....||.||| |.-|.
T Consensus 272 ~D~sn~~~--rsn~~fDaIvc-DPPYG 295 (421)
T KOG2671|consen 272 ADFSNPPL--RSNLKFDAIVC-DPPYG 295 (421)
T ss_pred ecccCcch--hhcceeeEEEe-CCCcc
Confidence 55544321 12347899887 66563
|
|
| >COG1568 Predicted methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.06 Score=42.66 Aligned_cols=93 Identities=17% Similarity=0.222 Sum_probs=68.0
Q ss_pred CCCCCcEEEeCCCccHHHHHHHhcC-CCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCc
Q 038343 20 IFSNKSCFEVGSGVGLVGICLAHVK-ASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASE 98 (191)
Q Consensus 20 ~~~~~~VLElG~GtG~~~~~la~~g-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~ 98 (191)
...|+.|+=+| ---++|+.++..| +++|..+|+++..++...+.++..+.. ++.+...|..++.+
T Consensus 150 DL~gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~~-------------~ie~~~~Dlr~plp 215 (354)
T COG1568 150 DLEGKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGYN-------------NIEAFVFDLRNPLP 215 (354)
T ss_pred CcCCCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCcc-------------chhheeehhcccCh
Confidence 35788899998 5557777666544 569999999999999999888877753 46777888777655
Q ss_pred CCCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccC
Q 038343 99 SGLSAFVPEIILGADILYDRSCFPDLVRILAILLNRR 135 (191)
Q Consensus 99 ~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~ 135 (191)
..+. ++||+++. +++..+..++.++..|
T Consensus 216 e~~~-~kFDvfiT--------DPpeTi~alk~FlgRG 243 (354)
T COG1568 216 EDLK-RKFDVFIT--------DPPETIKALKLFLGRG 243 (354)
T ss_pred HHHH-hhCCeeec--------CchhhHHHHHHHHhcc
Confidence 4433 58999875 4455666777777666
|
|
| >PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.022 Score=43.29 Aligned_cols=53 Identities=9% Similarity=0.033 Sum_probs=38.7
Q ss_pred HHHHHHhhCCCCCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHH
Q 038343 9 LLSEFILSFPEIFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRS 63 (191)
Q Consensus 9 ~L~~~l~~~~~~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~ 63 (191)
.|.+.+.+.. ..+|..|||--||+|.+++++.++|- +++++|++++..+.+++
T Consensus 179 ~l~~~lI~~~-t~~gdiVlDpF~GSGTT~~aa~~l~R-~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 179 ELIERLIKAS-TNPGDIVLDPFAGSGTTAVAAEELGR-RYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp HHHHHHHHHH-S-TT-EEEETT-TTTHHHHHHHHTT--EEEEEESSHHHHHHHHH
T ss_pred HHHHHHHHhh-hccceeeehhhhccChHHHHHHHcCC-eEEEEeCCHHHHHHhcC
Confidence 3444444322 23677999999999999999999976 89999999998888763
|
In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B .... |
| >PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.031 Score=43.30 Aligned_cols=101 Identities=18% Similarity=0.141 Sum_probs=51.6
Q ss_pred cEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCCCCCC
Q 038343 25 SCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESGLSAF 104 (191)
Q Consensus 25 ~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~~~~~ 104 (191)
+|||.-+|-|.=++.++..|+ +|++.+.+|-+-..++.-++......... ..-..++++...|-.+... .++.
T Consensus 78 ~VLDaTaGLG~Da~vlA~~G~-~V~~lErspvia~Ll~dGL~r~~~~~~~~----~~~~~ri~l~~~d~~~~L~--~~~~ 150 (234)
T PF04445_consen 78 SVLDATAGLGRDAFVLASLGC-KVTGLERSPVIAALLKDGLKRAQQDPELL----AEAMRRIQLIHGDALEYLR--QPDN 150 (234)
T ss_dssp -EEETT-TTSHHHHHHHHHT---EEEEE--HHHHHHHHHHHHHHHHSTTTH----HHHHHHEEEEES-CCCHCC--CHSS
T ss_pred EEEECCCcchHHHHHHHccCC-eEEEEECCHHHHHHHHHHHHHHHhCcHhH----HHHHhCCEEEcCCHHHHHh--hcCC
Confidence 899999999999999998987 89999999877666665443322110000 0001356666666544332 2346
Q ss_pred CCCEEEEcccccCCCChHH----HHHHHHHHhc
Q 038343 105 VPEIILGADILYDRSCFPD----LVRILAILLN 133 (191)
Q Consensus 105 ~fDvIi~~d~ly~~~~~~~----ll~~l~~ll~ 133 (191)
+||+|.. |.+|....-.+ =++.++.++.
T Consensus 151 s~DVVY~-DPMFp~~~ksa~vkk~m~~lr~L~~ 182 (234)
T PF04445_consen 151 SFDVVYF-DPMFPERKKSALVKKEMRVLRDLAG 182 (234)
T ss_dssp --SEEEE---S-----TTTT-SHHHHHHHHHHS
T ss_pred CCCEEEE-CCCCCCcccccccccchHHHHHhhc
Confidence 8999998 77775433222 3455555554
|
; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A. |
| >KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.051 Score=44.25 Aligned_cols=92 Identities=16% Similarity=0.031 Sum_probs=63.0
Q ss_pred CcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCCCCC
Q 038343 24 KSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESGLSA 103 (191)
Q Consensus 24 ~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~~~~ 103 (191)
...+|+|+|.|.+.-.+....+ ++-+++.+...+..++.++. .+ +.....|.-+..
T Consensus 179 ~~avDvGgGiG~v~k~ll~~fp-~ik~infdlp~v~~~a~~~~-~g----------------V~~v~gdmfq~~------ 234 (342)
T KOG3178|consen 179 NVAVDVGGGIGRVLKNLLSKYP-HIKGINFDLPFVLAAAPYLA-PG----------------VEHVAGDMFQDT------ 234 (342)
T ss_pred ceEEEcCCcHhHHHHHHHHhCC-CCceeecCHHHHHhhhhhhc-CC----------------cceecccccccC------
Confidence 5789999999955544333434 78899888777666655543 22 222333332221
Q ss_pred CCCCEEEEcccccCCC--ChHHHHHHHHHHhccCCCCc
Q 038343 104 FVPEIILGADILYDRS--CFPDLVRILAILLNRRKSVS 139 (191)
Q Consensus 104 ~~fDvIi~~d~ly~~~--~~~~ll~~l~~ll~~~g~~~ 139 (191)
.+-|+|+.-.|+++.. +...+|+.+++-|+|+|+..
T Consensus 235 P~~daI~mkWiLhdwtDedcvkiLknC~~sL~~~GkIi 272 (342)
T KOG3178|consen 235 PKGDAIWMKWILHDWTDEDCVKILKNCKKSLPPGGKII 272 (342)
T ss_pred CCcCeEEEEeecccCChHHHHHHHHHHHHhCCCCCEEE
Confidence 2467999999999765 57788999999999988655
|
|
| >COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.065 Score=44.03 Aligned_cols=96 Identities=17% Similarity=0.088 Sum_probs=62.9
Q ss_pred CCcEEEeCCCccHHHHHHHh-cCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCCC
Q 038343 23 NKSCFEVGSGVGLVGICLAH-VKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESGL 101 (191)
Q Consensus 23 ~~~VLElG~GtG~~~~~la~-~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~~ 101 (191)
..+|+|--+|||+=|+-.+. .+..+|++-|++|.+++.+++|++.|... ...+..-|-+.....
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~~-------------~~~v~n~DAN~lm~~-- 117 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSGE-------------DAEVINKDANALLHE-- 117 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCcc-------------cceeecchHHHHHHh--
Confidence 66899999999999995554 55558999999999999999999999422 122222221111110
Q ss_pred CCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCC
Q 038343 102 SAFVPEIILGADILYDRSCFPDLVRILAILLNRRKS 137 (191)
Q Consensus 102 ~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~ 137 (191)
....||+|=. |.+= .+.+++....+.++.+|-
T Consensus 118 ~~~~fd~IDi-DPFG---SPaPFlDaA~~s~~~~G~ 149 (380)
T COG1867 118 LHRAFDVIDI-DPFG---SPAPFLDAALRSVRRGGL 149 (380)
T ss_pred cCCCccEEec-CCCC---CCchHHHHHHHHhhcCCE
Confidence 1256888732 4332 345667777777776653
|
|
| >PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.0005 Score=46.38 Aligned_cols=95 Identities=15% Similarity=-0.011 Sum_probs=30.3
Q ss_pred EEeCCCccHHHHHHHhc----CCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCCCC
Q 038343 27 FEVGSGVGLVGICLAHV----KASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESGLS 102 (191)
Q Consensus 27 LElG~GtG~~~~~la~~----g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~~~ 102 (191)
||+|+..|..++.+++. +..+++++|..+. .+..+++++..+.. .++++...+..+... .+.
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~~------------~~~~~~~g~s~~~l~-~~~ 66 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGLS------------DRVEFIQGDSPDFLP-SLP 66 (106)
T ss_dssp --------------------------EEEESS-------------GGG-------------BTEEEEES-THHHHH-HHH
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCCC------------CeEEEEEcCcHHHHH-HcC
Confidence 79999999877765542 2137999999875 33344444433322 245666555322211 122
Q ss_pred CCCCCEEEEcccccCCCChHHHHHHHHHHhccCC
Q 038343 103 AFVPEIILGADILYDRSCFPDLVRILAILLNRRK 136 (191)
Q Consensus 103 ~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g 136 (191)
..+||+|+. |.-+..+....-++.+...|+|+|
T Consensus 67 ~~~~dli~i-Dg~H~~~~~~~dl~~~~~~l~~gg 99 (106)
T PF13578_consen 67 DGPIDLIFI-DGDHSYEAVLRDLENALPRLAPGG 99 (106)
T ss_dssp H--EEEEEE-ES---HHHHHHHHHHHGGGEEEEE
T ss_pred CCCEEEEEE-CCCCCHHHHHHHHHHHHHHcCCCe
Confidence 357999886 443333344455566666677764
|
|
| >TIGR00006 S-adenosyl-methyltransferase MraW | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.083 Score=42.64 Aligned_cols=48 Identities=13% Similarity=0.091 Sum_probs=38.7
Q ss_pred CCCCcEEEeCCCccHHHHHHHh-cCCCeEEEEcCChHHHHHHHHHHHHh
Q 038343 21 FSNKSCFEVGSGVGLVGICLAH-VKASKVTLTDGDHLTLANMRSNLELN 68 (191)
Q Consensus 21 ~~~~~VLElG~GtG~~~~~la~-~g~~~v~~tD~~~~~l~~~~~n~~~n 68 (191)
.++..++|.-+|.|--+..+++ .+..+|++.|.++.++..+++.++..
T Consensus 19 ~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~ 67 (305)
T TIGR00006 19 KPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDF 67 (305)
T ss_pred CCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhc
Confidence 4677999999999977775554 33358999999999999998877643
|
Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn. |
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=95.46 E-value=0.069 Score=42.66 Aligned_cols=46 Identities=9% Similarity=-0.060 Sum_probs=41.0
Q ss_pred CCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHH
Q 038343 21 FSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLEL 67 (191)
Q Consensus 21 ~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~ 67 (191)
.+|..|||-.+|+|.+++++.++|- ++++.|++++-.+.+++.+..
T Consensus 207 ~~GD~VLDPF~GSGTT~~AA~~lgR-~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 207 NPGDIVLDPFAGSFTTGAVAKASGR-KFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred CCCCEEEECCCCCcHHHHHHHHcCC-CEEEEeCCHHHHHHHHHHHHh
Confidence 4788999999999999999999976 899999999999998887654
|
|
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.42 E-value=0.059 Score=44.39 Aligned_cols=102 Identities=22% Similarity=0.241 Sum_probs=63.8
Q ss_pred CcEEEeCCCccHHHHHHHhcC-CCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeec---CCCCCcC
Q 038343 24 KSCFEVGSGVGLVGICLAHVK-ASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLP---WESASES 99 (191)
Q Consensus 24 ~~VLElG~GtG~~~~~la~~g-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ld---w~~~~~~ 99 (191)
.+||=||.|-|+....+.+.. ..+++.+|.+|.|++.+++|.....+..... ...++++..-| |-..
T Consensus 291 ~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf------~dpRv~Vv~dDAf~wlr~--- 361 (508)
T COG4262 291 RSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSF------SDPRVTVVNDDAFQWLRT--- 361 (508)
T ss_pred ceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCc------cCCeeEEEeccHHHHHHh---
Confidence 489999999999999888875 5699999999999999987654433221100 11344444333 3222
Q ss_pred CCCCCCCCEEEEcccccCCC-------ChHHHHHHHHHHhccCCCC
Q 038343 100 GLSAFVPEIILGADILYDRS-------CFPDLVRILAILLNRRKSV 138 (191)
Q Consensus 100 ~~~~~~fDvIi~~d~ly~~~-------~~~~ll~~l~~ll~~~g~~ 138 (191)
....||+||. |.. ++. .-.++-..+++.|+++|..
T Consensus 362 --a~~~fD~vIV-Dl~-DP~tps~~rlYS~eFY~ll~~~l~e~Gl~ 403 (508)
T COG4262 362 --AADMFDVVIV-DLP-DPSTPSIGRLYSVEFYRLLSRHLAETGLM 403 (508)
T ss_pred --hcccccEEEE-eCC-CCCCcchhhhhhHHHHHHHHHhcCcCceE
Confidence 1237888886 221 111 1234556677777777643
|
|
| >COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.42 E-value=0.067 Score=43.81 Aligned_cols=100 Identities=18% Similarity=0.138 Sum_probs=57.6
Q ss_pred CCCCCCcEEEeCCCccHHHHHHHhcC--CCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCC
Q 038343 19 EIFSNKSCFEVGSGVGLVGICLAHVK--ASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESA 96 (191)
Q Consensus 19 ~~~~~~~VLElG~GtG~~~~~la~~g--~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~ 96 (191)
..+..++|||+|.|.|....++-..- .++++.++.++ .+..+-..+..|-.. ...+|...
T Consensus 110 ~dfapqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp-~lrkV~~tl~~nv~t-----------------~~td~r~s 171 (484)
T COG5459 110 PDFAPQSILDVGAGPGTGLWALNDIWPDLKSAVILEASP-ALRKVGDTLAENVST-----------------EKTDWRAS 171 (484)
T ss_pred CCcCcchhhccCCCCchhhhhhcccCCCchhhhhhccCH-HHHHHHHHHHhhccc-----------------ccCCCCCC
Confidence 34677789999999885444333322 24677777765 445554455554322 22444322
Q ss_pred Cc-----CCCCCCCCCEEEEcccccCCCChH---HHHHHHHHHhccCC
Q 038343 97 SE-----SGLSAFVPEIILGADILYDRSCFP---DLVRILAILLNRRK 136 (191)
Q Consensus 97 ~~-----~~~~~~~fDvIi~~d~ly~~~~~~---~ll~~l~~ll~~~g 136 (191)
.- .......|++|++.|=+-...... ..++.+-.++.|||
T Consensus 172 ~vt~dRl~lp~ad~ytl~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg 219 (484)
T COG5459 172 DVTEDRLSLPAADLYTLAIVLDELLPDGNEKPIQVNIERLWNLLAPGG 219 (484)
T ss_pred ccchhccCCCccceeehhhhhhhhccccCcchHHHHHHHHHHhccCCC
Confidence 10 111234689999888776554433 45666777788865
|
|
| >KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=95.15 E-value=0.059 Score=43.60 Aligned_cols=44 Identities=25% Similarity=0.299 Sum_probs=37.0
Q ss_pred CCCCCcEEEeCCC-ccHHHHHHH-hcCCCeEEEEcCChHHHHHHHH
Q 038343 20 IFSNKSCFEVGSG-VGLVGICLA-HVKASKVTLTDGDHLTLANMRS 63 (191)
Q Consensus 20 ~~~~~~VLElG~G-tG~~~~~la-~~g~~~v~~tD~~~~~l~~~~~ 63 (191)
...|.+||=+|+| .|+..+..| .+|+++|+++|.++.-|+.+++
T Consensus 167 vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~ 212 (354)
T KOG0024|consen 167 VKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK 212 (354)
T ss_pred cccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH
Confidence 3467899999999 887777544 5799999999999999999886
|
|
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=94.95 E-value=0.14 Score=39.52 Aligned_cols=46 Identities=9% Similarity=-0.054 Sum_probs=40.1
Q ss_pred CCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHh
Q 038343 22 SNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELN 68 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n 68 (191)
+|..|||--||+|.+++++.++|- +++++|++++-.+.+.+.++..
T Consensus 163 ~g~~vlDpf~Gsgtt~~aa~~~~r-~~~g~e~~~~y~~~~~~r~~~~ 208 (227)
T PRK13699 163 PNAIVLDPFAGSGSTCVAALQSGR-RYIGIELLEQYHRAGQQRLAAV 208 (227)
T ss_pred CCCEEEeCCCCCCHHHHHHHHcCC-CEEEEecCHHHHHHHHHHHHHH
Confidence 677999999999999999999876 8999999999988887776543
|
|
| >KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.84 E-value=0.18 Score=40.64 Aligned_cols=126 Identities=13% Similarity=0.048 Sum_probs=71.9
Q ss_pred CCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCc------cccc------------------
Q 038343 23 NKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDT------SLLE------------------ 78 (191)
Q Consensus 23 ~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~------~~~~------------------ 78 (191)
..+||==|||.|-++.-++..|. .+-+-+.+--|+- ..+.-+|...... ...+
T Consensus 151 ki~iLvPGaGlGRLa~dla~~G~-~~qGNEfSy~Mli--~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD 227 (369)
T KOG2798|consen 151 KIRILVPGAGLGRLAYDLACLGF-KCQGNEFSYFMLI--CSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPD 227 (369)
T ss_pred CceEEecCCCchhHHHHHHHhcc-cccccHHHHHHHH--HHHHHHHhhccCCcEEEEeeeeccccccccccccccccCcc
Confidence 44788899999999999999987 5666677655543 2333333211110 0000
Q ss_pred -----ccCCCCeeEEEeecCCCCCcCCCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCccccccCCCCccccc
Q 038343 79 -----SYEDPNVVQCVHLPWESASESGLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVSSSRKESSKGFTLDT 153 (191)
Q Consensus 79 -----~~~~~~~i~~~~ldw~~~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~~~~~~~~~~~~~~~ 153 (191)
.+.....+....+|+-+.-......+.||+|+.+--|-...++-..+++|.++|+|||.+.- -++.+..
T Consensus 228 ~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDTa~NileYi~tI~~iLk~GGvWiN------lGPLlYH 301 (369)
T KOG2798|consen 228 IHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDTAHNILEYIDTIYKILKPGGVWIN------LGPLLYH 301 (369)
T ss_pred ccccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEeechHHHHHHHHHHHHhccCCcEEEe------ccceeee
Confidence 01111222223333322222212235799999874443456677789999999999987662 2445566
Q ss_pred ccCC
Q 038343 154 KCNT 157 (191)
Q Consensus 154 ~~~~ 157 (191)
|...
T Consensus 302 F~d~ 305 (369)
T KOG2798|consen 302 FEDT 305 (369)
T ss_pred ccCC
Confidence 6553
|
|
| >PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A | Back alignment and domain information |
|---|
Probab=94.83 E-value=0.19 Score=39.26 Aligned_cols=73 Identities=11% Similarity=0.045 Sum_probs=47.2
Q ss_pred CCcEEEeCCCccHHHHHHHhcC-CCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCCC
Q 038343 23 NKSCFEVGSGVGLVGICLAHVK-ASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESGL 101 (191)
Q Consensus 23 ~~~VLElG~GtG~~~~~la~~g-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~~ 101 (191)
..+|+|||||.==+++...... ...|++.|++..+++.+..-+..-+.. ..+...|.-.. .
T Consensus 106 p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~--------------~~~~v~Dl~~~----~ 167 (251)
T PF07091_consen 106 PDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVP--------------HDARVRDLLSD----P 167 (251)
T ss_dssp -SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-C--------------EEEEEE-TTTS----H
T ss_pred CchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCC--------------cceeEeeeecc----C
Confidence 5589999999887777444442 239999999999999998877766643 33344443322 2
Q ss_pred CCCCCCEEEEcc
Q 038343 102 SAFVPEIILGAD 113 (191)
Q Consensus 102 ~~~~fDvIi~~d 113 (191)
.....|+.+.--
T Consensus 168 ~~~~~DlaLllK 179 (251)
T PF07091_consen 168 PKEPADLALLLK 179 (251)
T ss_dssp TTSEESEEEEET
T ss_pred CCCCcchhhHHH
Confidence 334689888643
|
|
| >PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [] | Back alignment and domain information |
|---|
Probab=94.51 E-value=0.088 Score=35.68 Aligned_cols=30 Identities=20% Similarity=0.137 Sum_probs=24.9
Q ss_pred CCcEEEeCCCccHHHHHHHhcCCCeEEEEcC
Q 038343 23 NKSCFEVGSGVGLVGICLAHVKASKVTLTDG 53 (191)
Q Consensus 23 ~~~VLElG~GtG~~~~~la~~g~~~v~~tD~ 53 (191)
....+|||||.|++--.+.+-|. .-.++|.
T Consensus 59 ~~~FVDlGCGNGLLV~IL~~EGy-~G~GiD~ 88 (112)
T PF07757_consen 59 FQGFVDLGCGNGLLVYILNSEGY-PGWGIDA 88 (112)
T ss_pred CCceEEccCCchHHHHHHHhCCC-Ccccccc
Confidence 44799999999999988888887 5677775
|
; GO: 0008168 methyltransferase activity |
| >COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=93.76 E-value=0.24 Score=40.41 Aligned_cols=44 Identities=14% Similarity=0.208 Sum_probs=38.2
Q ss_pred CCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHH
Q 038343 23 NKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLE 66 (191)
Q Consensus 23 ~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~ 66 (191)
..+++||.||.|.+++-+...|..-+.+.|+++.+++.-+.|..
T Consensus 3 ~~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~~ty~~n~~ 46 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVATYKANFP 46 (328)
T ss_pred CceEEeeccCCchHHHHHHhcCCeEEEEEecCHHHHHHHHHhCC
Confidence 34899999999999998888888789999999999888877754
|
|
| >KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.72 E-value=0.22 Score=41.23 Aligned_cols=53 Identities=21% Similarity=0.308 Sum_probs=36.5
Q ss_pred HHHHHHhhCCCCCCCCcEEEeCCCccHHHHHHHh-cCCCeEEEEcCChHHHHHHH
Q 038343 9 LLSEFILSFPEIFSNKSCFEVGSGVGLVGICLAH-VKASKVTLTDGDHLTLANMR 62 (191)
Q Consensus 9 ~L~~~l~~~~~~~~~~~VLElG~GtG~~~~~la~-~g~~~v~~tD~~~~~l~~~~ 62 (191)
.|++.+.+......-..|+|+|+|.|.++.+++- .|. +|.++|.+....+.++
T Consensus 140 ~lselvSsi~~f~gi~~vvD~GaG~G~LSr~lSl~y~l-sV~aIegsq~~~~ra~ 193 (476)
T KOG2651|consen 140 RLSELVSSISDFTGIDQVVDVGAGQGHLSRFLSLGYGL-SVKAIEGSQRLVERAQ 193 (476)
T ss_pred HHHHHHHHHHhhcCCCeeEEcCCCchHHHHHHhhccCc-eEEEeccchHHHHHHH
Confidence 3445554443333445899999999999987765 444 8999999866554443
|
|
| >PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2 | Back alignment and domain information |
|---|
Probab=93.69 E-value=0.15 Score=41.06 Aligned_cols=42 Identities=17% Similarity=0.170 Sum_probs=37.2
Q ss_pred cEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHH
Q 038343 25 SCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLE 66 (191)
Q Consensus 25 ~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~ 66 (191)
+++||.||.|.+++-+.+.|...+.++|+++.+.+.-+.|..
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~~~y~~N~~ 43 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDACETYKANFP 43 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHHHHHHHHHT
T ss_pred cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHHHhhhhccc
Confidence 699999999999998889888789999999999988888875
|
1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A .... |
| >PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function | Back alignment and domain information |
|---|
Probab=93.56 E-value=0.17 Score=39.63 Aligned_cols=44 Identities=14% Similarity=0.205 Sum_probs=28.7
Q ss_pred CCcEEEeCCCccHHHH-HHHhcC--------CCeEEEEcCChHHHHHHHHHHH
Q 038343 23 NKSCFEVGSGVGLVGI-CLAHVK--------ASKVTLTDGDHLTLANMRSNLE 66 (191)
Q Consensus 23 ~~~VLElG~GtG~~~~-~la~~g--------~~~v~~tD~~~~~l~~~~~n~~ 66 (191)
..+|+|+|+|+|.++. .+..+. .-+|+.+|.++.+.+.-++.+.
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~ 71 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLS 71 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCC
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhh
Confidence 3599999999997666 333221 1389999999887666655543
|
; PDB: 4F3N_A 1ZKD_B. |
| >PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes | Back alignment and domain information |
|---|
Probab=93.53 E-value=0.3 Score=37.38 Aligned_cols=46 Identities=24% Similarity=0.250 Sum_probs=32.8
Q ss_pred CCcEEEeCCCccHHHHHHHhcC---CCeEEEEcCChHHHHHHHHHHHHh
Q 038343 23 NKSCFEVGSGVGLVGICLAHVK---ASKVTLTDGDHLTLANMRSNLELN 68 (191)
Q Consensus 23 ~~~VLElG~GtG~~~~~la~~g---~~~v~~tD~~~~~l~~~~~n~~~n 68 (191)
.-++-|=.||+|.+-..+..+. -..|++.|+++++|+.+++|+..-
T Consensus 52 p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LL 100 (246)
T PF11599_consen 52 PYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLL 100 (246)
T ss_dssp -EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCC
T ss_pred CeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhc
Confidence 3489999999995544444332 248999999999999999997653
|
This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A. |
| >COG1565 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.52 E-value=0.36 Score=39.77 Aligned_cols=61 Identities=20% Similarity=0.193 Sum_probs=38.8
Q ss_pred HHHHHHHhhCCC---CCCCCcEEEeCCCccHHHH-HHHhc--------CCCeEEEEcCChHHHHHHHHHHHHh
Q 038343 8 LLLSEFILSFPE---IFSNKSCFEVGSGVGLVGI-CLAHV--------KASKVTLTDGDHLTLANMRSNLELN 68 (191)
Q Consensus 8 ~~L~~~l~~~~~---~~~~~~VLElG~GtG~~~~-~la~~--------g~~~v~~tD~~~~~l~~~~~n~~~n 68 (191)
..++.|+.+.-. ......++|+|+|+|.+.. ++... .+.+|..++.|++....-+.+++..
T Consensus 60 ella~~~~~~wq~~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~ 132 (370)
T COG1565 60 ELLAEQFLQLWQELGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKAT 132 (370)
T ss_pred HHHHHHHHHHHHHhcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhcc
Confidence 455666555321 1234479999999997665 44332 2459999999987766555555443
|
|
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=93.41 E-value=0.88 Score=39.50 Aligned_cols=43 Identities=21% Similarity=0.242 Sum_probs=34.7
Q ss_pred CCCCCcEEEeCCC-ccHHHHHH-HhcCCCeEEEEcCChHHHHHHHH
Q 038343 20 IFSNKSCFEVGSG-VGLVGICL-AHVKASKVTLTDGDHLTLANMRS 63 (191)
Q Consensus 20 ~~~~~~VLElG~G-tG~~~~~l-a~~g~~~v~~tD~~~~~l~~~~~ 63 (191)
..++.+|+=+|+| .|+.++.. ..+|+ .|+++|.+++.++.+++
T Consensus 162 ~~pg~kVlViGaG~iGL~Ai~~Ak~lGA-~V~a~D~~~~rle~aes 206 (509)
T PRK09424 162 KVPPAKVLVIGAGVAGLAAIGAAGSLGA-IVRAFDTRPEVAEQVES 206 (509)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH
Confidence 3468899999999 78888744 45688 89999999988877764
|
|
| >COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.88 E-value=1.8 Score=33.88 Aligned_cols=113 Identities=14% Similarity=0.080 Sum_probs=75.3
Q ss_pred HHHHHHHHhhCCCCCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCee
Q 038343 7 SLLLSEFILSFPEIFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVV 86 (191)
Q Consensus 7 a~~L~~~l~~~~~~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i 86 (191)
...|..|+....+..++.. |..-+|+=.++..+.+-. .++.+++..|+-...++.|+... .++
T Consensus 74 pa~l~~yl~~i~~lN~~~~-l~~YpGSP~lA~~llR~q-DRl~l~ELHp~D~~~L~~~f~~d---------------~~v 136 (279)
T COG2961 74 PAELEPYLDAVRQLNPGGG-LRYYPGSPLLARQLLREQ-DRLVLTELHPSDAPLLRNNFAGD---------------RRV 136 (279)
T ss_pred hHHHHHHHHHHHHhCCCCC-cccCCCCHHHHHHHcchh-ceeeeeecCccHHHHHHHHhCCC---------------cce
Confidence 4456667665444445544 888899887777666664 48999999999888888877622 356
Q ss_pred EEEeecCCCCCcCCCC-CCCCCEEEEcccccCCCChHHHHHHHHHHhccCC
Q 038343 87 QCVHLPWESASESGLS-AFVPEIILGADILYDRSCFPDLVRILAILLNRRK 136 (191)
Q Consensus 87 ~~~~ldw~~~~~~~~~-~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g 136 (191)
.+...|=-......++ ..+--+|+.-..+....+++.+++++++.++.-.
T Consensus 137 rv~~~DG~~~l~a~LPP~erRglVLIDPPfE~~~eY~rvv~~l~~~~kRf~ 187 (279)
T COG2961 137 RVLRGDGFLALKAHLPPKERRGLVLIDPPFELKDEYQRVVEALAEAYKRFA 187 (279)
T ss_pred EEEecCcHHHHhhhCCCCCcceEEEeCCCcccccHHHHHHHHHHHHHHhhc
Confidence 6777662211122222 2345666664444567789999999999998774
|
|
| >PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre | Back alignment and domain information |
|---|
Probab=92.79 E-value=2.3 Score=31.15 Aligned_cols=104 Identities=11% Similarity=0.047 Sum_probs=64.9
Q ss_pred HHHHHHHHhhCCCCCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCee
Q 038343 7 SLLLSEFILSFPEIFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVV 86 (191)
Q Consensus 7 a~~L~~~l~~~~~~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i 86 (191)
+..|++.+.+... .+.+|+=|||=+-...+.-......++++.|++..- ...+ ..
T Consensus 12 ~~~l~~~l~~~~~--~~~~iaclstPsl~~~l~~~~~~~~~~~Lle~D~RF--------~~~~--------------~~- 66 (162)
T PF10237_consen 12 AEFLARELLDGAL--DDTRIACLSTPSLYEALKKESKPRIQSFLLEYDRRF--------EQFG--------------GD- 66 (162)
T ss_pred HHHHHHHHHHhcC--CCCEEEEEeCcHHHHHHHhhcCCCccEEEEeecchH--------HhcC--------------Cc-
Confidence 5566666665432 456899998887666654422223489999998532 2211 12
Q ss_pred EEEeecCCCCCcC--CCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCC
Q 038343 87 QCVHLPWESASES--GLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRK 136 (191)
Q Consensus 87 ~~~~ldw~~~~~~--~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g 136 (191)
.+...|...+... .+ .++||+||+=..+...+.......+++.++++++
T Consensus 67 ~F~fyD~~~p~~~~~~l-~~~~d~vv~DPPFl~~ec~~k~a~ti~~L~k~~~ 117 (162)
T PF10237_consen 67 EFVFYDYNEPEELPEEL-KGKFDVVVIDPPFLSEECLTKTAETIRLLLKPGG 117 (162)
T ss_pred ceEECCCCChhhhhhhc-CCCceEEEECCCCCCHHHHHHHHHHHHHHhCccc
Confidence 3445666554321 23 4689999985555556666777899999999964
|
This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ). |
| >COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=92.76 E-value=0.36 Score=37.63 Aligned_cols=46 Identities=26% Similarity=0.397 Sum_probs=35.1
Q ss_pred CCCCCcEEEeCCC-ccHHHH-HHHhcCCCeEEEEcCChHHHHHHHHHH
Q 038343 20 IFSNKSCFEVGSG-VGLVGI-CLAHVKASKVTLTDGDHLTLANMRSNL 65 (191)
Q Consensus 20 ~~~~~~VLElG~G-tG~~~~-~la~~g~~~v~~tD~~~~~l~~~~~n~ 65 (191)
.++..+|+=+|+| .|.... +|++.|..+++++|.+.-.+.++.+.+
T Consensus 27 kl~~~~V~VvGiGGVGSw~veALaRsGig~itlID~D~v~vTN~NRQi 74 (263)
T COG1179 27 KLKQAHVCVVGIGGVGSWAVEALARSGIGRITLIDMDDVCVTNTNRQI 74 (263)
T ss_pred HHhhCcEEEEecCchhHHHHHHHHHcCCCeEEEEecccccccccchhh
Confidence 3466789999988 776555 889999999999999876666554443
|
|
| >PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=92.66 E-value=0.37 Score=38.15 Aligned_cols=100 Identities=22% Similarity=0.165 Sum_probs=55.4
Q ss_pred cEEEeCCC---ccHHHHHHHhc-CCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCc--
Q 038343 25 SCFEVGSG---VGLVGICLAHV-KASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASE-- 98 (191)
Q Consensus 25 ~VLElG~G---tG~~~~~la~~-g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~-- 98 (191)
..|||||| .|.+-..+... ...+|+.+|.+|-++...+.-+..+.- ....+...|..++..
T Consensus 71 QFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~-------------g~t~~v~aD~r~p~~iL 137 (267)
T PF04672_consen 71 QFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPR-------------GRTAYVQADLRDPEAIL 137 (267)
T ss_dssp EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TT-------------SEEEEEE--TT-HHHHH
T ss_pred eEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCC-------------ccEEEEeCCCCCHHHHh
Confidence 79999999 44444443332 234999999999999888876655431 235666766654421
Q ss_pred ------CCCCCCCCCEEEEcccccCC---CChHHHHHHHHHHhccCCC
Q 038343 99 ------SGLSAFVPEIILGADILYDR---SCFPDLVRILAILLNRRKS 137 (191)
Q Consensus 99 ------~~~~~~~fDvIi~~d~ly~~---~~~~~ll~~l~~ll~~~g~ 137 (191)
..+.-.+.=-|+...++++. ++...++..+...|.||+.
T Consensus 138 ~~p~~~~~lD~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~ 185 (267)
T PF04672_consen 138 AHPEVRGLLDFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSY 185 (267)
T ss_dssp CSHHHHCC--TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-E
T ss_pred cCHHHHhcCCCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCce
Confidence 00111223345566677754 4688888999999988854
|
; PDB: 3GIW_A 3GO4_A 2QE6_A. |
| >KOG4058 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.65 E-value=0.69 Score=33.40 Aligned_cols=50 Identities=14% Similarity=0.075 Sum_probs=39.9
Q ss_pred CCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCC
Q 038343 22 SNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLS 71 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~ 71 (191)
+..+.+|||+|-|-+-+.+++.|...-++++.++=.+...+-..-..+..
T Consensus 72 ~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g~~ 121 (199)
T KOG4058|consen 72 PKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAGCA 121 (199)
T ss_pred CCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHHhcc
Confidence 44579999999998888889988778899999998887777665555543
|
|
| >cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E | Back alignment and domain information |
|---|
Probab=92.40 E-value=0.65 Score=36.03 Aligned_cols=41 Identities=34% Similarity=0.426 Sum_probs=30.6
Q ss_pred CCCCcEEEeCCC-cc-HHHHHHHhcCCCeEEEEcCChHHHHHH
Q 038343 21 FSNKSCFEVGSG-VG-LVGICLAHVKASKVTLTDGDHLTLANM 61 (191)
Q Consensus 21 ~~~~~VLElG~G-tG-~~~~~la~~g~~~v~~tD~~~~~l~~~ 61 (191)
+.+.+|+=+||| .| .+...+++.|..+++++|.+.-...++
T Consensus 9 L~~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~V~~sNl 51 (231)
T cd00755 9 LRNAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDVVCVSNL 51 (231)
T ss_pred HhCCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEECchhh
Confidence 356689999998 66 455588899999999999865433333
|
coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >PRK12548 shikimate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.91 E-value=1.8 Score=34.71 Aligned_cols=35 Identities=23% Similarity=0.220 Sum_probs=25.4
Q ss_pred CCCCCcEEEeCCCccH-HHH--HHHhcCCCeEEEEcCCh
Q 038343 20 IFSNKSCFEVGSGVGL-VGI--CLAHVKASKVTLTDGDH 55 (191)
Q Consensus 20 ~~~~~~VLElG~GtG~-~~~--~la~~g~~~v~~tD~~~ 55 (191)
..+++++|=+|+| |. -++ .++..|+++|+.++.++
T Consensus 123 ~~~~k~vlI~GAG-GagrAia~~La~~G~~~V~I~~R~~ 160 (289)
T PRK12548 123 DVKGKKLTVIGAG-GAATAIQVQCALDGAKEITIFNIKD 160 (289)
T ss_pred CcCCCEEEEECCc-HHHHHHHHHHHHCCCCEEEEEeCCc
Confidence 3567889999998 52 222 45677887799999875
|
|
| >PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown | Back alignment and domain information |
|---|
Probab=91.73 E-value=0.45 Score=33.23 Aligned_cols=44 Identities=25% Similarity=0.202 Sum_probs=29.7
Q ss_pred HHHHHHhhCCCCCCCCcEEEeCCCcc-HHHHHHHhcCCCeEEEEcCChH
Q 038343 9 LLSEFILSFPEIFSNKSCFEVGSGVG-LVGICLAHVKASKVTLTDGDHL 56 (191)
Q Consensus 9 ~L~~~l~~~~~~~~~~~VLElG~GtG-~~~~~la~~g~~~v~~tD~~~~ 56 (191)
.+++|+.++. +..+|+|+|-|-= -.+..+...|. .|++||+++.
T Consensus 3 ~~a~~ia~~~---~~~kiVEVGiG~~~~vA~~L~~~G~-dV~~tDi~~~ 47 (127)
T PF03686_consen 3 DFAEYIARLN---NYGKIVEVGIGFNPEVAKKLKERGF-DVIATDINPR 47 (127)
T ss_dssp HHHHHHHHHS----SSEEEEET-TT--HHHHHHHHHS--EEEEE-SS-S
T ss_pred hHHHHHHHhC---CCCcEEEECcCCCHHHHHHHHHcCC-cEEEEECccc
Confidence 4678887543 2339999999955 67778888886 9999999875
|
; PDB: 2K4M_A. |
| >COG1255 Uncharacterized protein conserved in archaea [Function unknown] | Back alignment and domain information |
|---|
Probab=91.61 E-value=0.82 Score=31.41 Aligned_cols=80 Identities=23% Similarity=0.150 Sum_probs=54.0
Q ss_pred cEEEeCCCcc-HHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCCCCC
Q 038343 25 SCFEVGSGVG-LVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESGLSA 103 (191)
Q Consensus 25 ~VLElG~GtG-~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~~~~ 103 (191)
+|+|+|.|-= -.+-.+++.|. .|++||+++. +.. ..+.+..-|..++.
T Consensus 16 kVvEVGiG~~~~VA~~L~e~g~-dv~atDI~~~-------~a~-----------------~g~~~v~DDitnP~------ 64 (129)
T COG1255 16 KVVEVGIGFFLDVAKRLAERGF-DVLATDINEK-------TAP-----------------EGLRFVVDDITNPN------ 64 (129)
T ss_pred cEEEEccchHHHHHHHHHHcCC-cEEEEecccc-------cCc-----------------ccceEEEccCCCcc------
Confidence 8999988854 46667888887 8999999764 111 12444555544432
Q ss_pred CCCCEEEEcccccCCCChHHHHHHHHHHhccCCC
Q 038343 104 FVPEIILGADILYDRSCFPDLVRILAILLNRRKS 137 (191)
Q Consensus 104 ~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~ 137 (191)
.-+--.++.+|.....+.+.+.+-++.+.=|-
T Consensus 65 --~~iY~~A~lIYSiRpppEl~~~ildva~aVga 96 (129)
T COG1255 65 --ISIYEGADLIYSIRPPPELQSAILDVAKAVGA 96 (129)
T ss_pred --HHHhhCccceeecCCCHHHHHHHHHHHHhhCC
Confidence 22333567778877788888888888776654
|
|
| >TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E | Back alignment and domain information |
|---|
Probab=91.54 E-value=0.72 Score=34.91 Aligned_cols=36 Identities=25% Similarity=0.491 Sum_probs=28.7
Q ss_pred CCCCCcEEEeCCC-cc-HHHHHHHhcCCCeEEEEcCCh
Q 038343 20 IFSNKSCFEVGSG-VG-LVGICLAHVKASKVTLTDGDH 55 (191)
Q Consensus 20 ~~~~~~VLElG~G-tG-~~~~~la~~g~~~v~~tD~~~ 55 (191)
.+.+.+||=+||| .| .+...+++.|..+++.+|.+.
T Consensus 18 kl~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ 55 (202)
T TIGR02356 18 RLLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDH 55 (202)
T ss_pred HhcCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCE
Confidence 3467799999999 55 456678888988999999863
|
coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli. |
| >KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=91.47 E-value=0.062 Score=45.72 Aligned_cols=50 Identities=22% Similarity=0.282 Sum_probs=42.6
Q ss_pred CCCcEEEeCCCccHHHHHHHhc--CCCeEEEEcCChHHHHHHHHHHHHhcCC
Q 038343 22 SNKSCFEVGSGVGLVGICLAHV--KASKVTLTDGDHLTLANMRSNLELNQLS 71 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~--g~~~v~~tD~~~~~l~~~~~n~~~n~~~ 71 (191)
++.+|||-=|+||+-++-.++. |..+|++-|.++.+++..++|++.|+.+
T Consensus 109 ~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~ 160 (525)
T KOG1253|consen 109 KSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVE 160 (525)
T ss_pred CcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCch
Confidence 4568999999999999955553 4568999999999999999999999654
|
|
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.45 E-value=0.97 Score=37.10 Aligned_cols=93 Identities=14% Similarity=0.130 Sum_probs=57.2
Q ss_pred CCCCCCcEEEeCCC-ccHHHHHHHh-cCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCC
Q 038343 19 EIFSNKSCFEVGSG-VGLVGICLAH-VKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESA 96 (191)
Q Consensus 19 ~~~~~~~VLElG~G-tG~~~~~la~-~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~ 96 (191)
...++.+|+=.|+| .|..++-+++ +|+ +|++.|.+++-++.+++- +.+ ...++.+.
T Consensus 163 ~~~pG~~V~I~G~GGlGh~avQ~Aka~ga-~Via~~~~~~K~e~a~~l----GAd-----------------~~i~~~~~ 220 (339)
T COG1064 163 NVKPGKWVAVVGAGGLGHMAVQYAKAMGA-EVIAITRSEEKLELAKKL----GAD-----------------HVINSSDS 220 (339)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHcCC-eEEEEeCChHHHHHHHHh----CCc-----------------EEEEcCCc
Confidence 34578899988888 5567776666 785 999999998877777642 211 12222211
Q ss_pred C-cCCCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCccc
Q 038343 97 S-ESGLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVSSS 141 (191)
Q Consensus 97 ~-~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~~~ 141 (191)
. ..... ..||+||-. .. ...+...-++|+++|....+
T Consensus 221 ~~~~~~~-~~~d~ii~t------v~-~~~~~~~l~~l~~~G~~v~v 258 (339)
T COG1064 221 DALEAVK-EIADAIIDT------VG-PATLEPSLKALRRGGTLVLV 258 (339)
T ss_pred hhhHHhH-hhCcEEEEC------CC-hhhHHHHHHHHhcCCEEEEE
Confidence 1 11111 138888753 22 55677777888899865543
|
|
| >TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2 | Back alignment and domain information |
|---|
Probab=91.00 E-value=1.1 Score=33.92 Aligned_cols=35 Identities=31% Similarity=0.360 Sum_probs=28.7
Q ss_pred CCCCCcEEEeCCC-cc-HHHHHHHhcCCCeEEEEcCC
Q 038343 20 IFSNKSCFEVGSG-VG-LVGICLAHVKASKVTLTDGD 54 (191)
Q Consensus 20 ~~~~~~VLElG~G-tG-~~~~~la~~g~~~v~~tD~~ 54 (191)
.++..+|+=+||| .| .++..+++.|..++++.|.+
T Consensus 18 ~L~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 18 KLEQATVAICGLGGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred HHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 3467799999999 55 56668888998899999987
|
Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter. |
| >TIGR00675 dcm DNA-methyltransferase (dcm) | Back alignment and domain information |
|---|
Probab=90.60 E-value=0.54 Score=38.18 Aligned_cols=41 Identities=12% Similarity=0.189 Sum_probs=35.3
Q ss_pred EEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHH
Q 038343 26 CFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLE 66 (191)
Q Consensus 26 VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~ 66 (191)
|+||.||.|.+++-+.+.|..-+.+.|+++.+.+..+.|..
T Consensus 1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~~a~~ty~~N~~ 41 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDKYAQKTYEANFG 41 (315)
T ss_pred CEEEecCccHHHHHHHHcCCeEEEEEeCCHHHHHHHHHhCC
Confidence 68999999999998888888677889999999888887753
|
All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=90.33 E-value=1.3 Score=35.88 Aligned_cols=43 Identities=28% Similarity=0.447 Sum_probs=33.0
Q ss_pred CCCCcEEEeCCC-ccH-HHHHHHhcCCCeEEEEcCChHHHHHHHH
Q 038343 21 FSNKSCFEVGSG-VGL-VGICLAHVKASKVTLTDGDHLTLANMRS 63 (191)
Q Consensus 21 ~~~~~VLElG~G-tG~-~~~~la~~g~~~v~~tD~~~~~l~~~~~ 63 (191)
..+.-|+=+||| .|. ..-++.+.|+.++-.+|.++-.|..+.+
T Consensus 72 l~~syVVVVG~GgVGSwv~nmL~RSG~qKi~iVDfdqVSlsSLNr 116 (430)
T KOG2018|consen 72 LTNSYVVVVGAGGVGSWVANMLLRSGVQKIRIVDFDQVSLSSLNR 116 (430)
T ss_pred hcCcEEEEEecCchhHHHHHHHHHhcCceEEEechhhccHhhhhh
Confidence 456679999998 674 4447888999999999998777766543
|
|
| >cd01487 E1_ThiF_like E1_ThiF_like | Back alignment and domain information |
|---|
Probab=90.29 E-value=2.1 Score=31.60 Aligned_cols=31 Identities=26% Similarity=0.340 Sum_probs=24.7
Q ss_pred cEEEeCCC-cc-HHHHHHHhcCCCeEEEEcCCh
Q 038343 25 SCFEVGSG-VG-LVGICLAHVKASKVTLTDGDH 55 (191)
Q Consensus 25 ~VLElG~G-tG-~~~~~la~~g~~~v~~tD~~~ 55 (191)
+|+=+||| .| .+...+++.|..+++..|.+.
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV 33 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 47889998 56 456678888988999999875
|
Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes | Back alignment and domain information |
|---|
Probab=90.09 E-value=0.48 Score=36.92 Aligned_cols=52 Identities=19% Similarity=0.197 Sum_probs=32.4
Q ss_pred HHHHHhhCCCCCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHH
Q 038343 10 LSEFILSFPEIFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMR 62 (191)
Q Consensus 10 L~~~l~~~~~~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~ 62 (191)
|+.+|.+.....+..+++|.-||+|.+++.+... ...|+.-|+++......+
T Consensus 8 l~~~I~~~ip~~~~~~~vepF~G~g~V~~~~~~~-~~~vi~ND~~~~l~~~~~ 59 (260)
T PF02086_consen 8 LAKWIIELIPKNKHKTYVEPFAGGGSVFLNLKQP-GKRVIINDINPDLINFWK 59 (260)
T ss_dssp GHHHHHHHS-S-S-SEEEETT-TTSHHHHCC----SSEEEEEES-HHHHHHHH
T ss_pred HHHHHHHHcCCCCCCEEEEEecchhHHHHHhccc-ccceeeeechHHHHHHHH
Confidence 4455554322115779999999999999876654 348999999987765554
|
There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B. |
| >COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=89.64 E-value=2.5 Score=36.56 Aligned_cols=50 Identities=18% Similarity=0.165 Sum_probs=38.3
Q ss_pred CCCcEEEeCCCccHHHHHHHh-cC----CCeEEEEcCChHHHHHHHHHHHHhcCC
Q 038343 22 SNKSCFEVGSGVGLVGICLAH-VK----ASKVTLTDGDHLTLANMRSNLELNQLS 71 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~-~g----~~~v~~tD~~~~~l~~~~~n~~~n~~~ 71 (191)
+..+|.|--||+|.+-+.+.+ .+ ...+++.|.++.....++.|+-.+++.
T Consensus 186 ~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~ 240 (489)
T COG0286 186 PRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIE 240 (489)
T ss_pred CCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCC
Confidence 445899999999955443332 21 136999999999999999999998876
|
|
| >KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=89.45 E-value=0.51 Score=35.42 Aligned_cols=34 Identities=12% Similarity=0.106 Sum_probs=27.0
Q ss_pred CCCCCcEEEeCCCccHHHHHHHhc-CC-CeEEEEcC
Q 038343 20 IFSNKSCFEVGSGVGLVGICLAHV-KA-SKVTLTDG 53 (191)
Q Consensus 20 ~~~~~~VLElG~GtG~~~~~la~~-g~-~~v~~tD~ 53 (191)
..++.+|||+||..|..+..+.+. ++ ..|.++|+
T Consensus 67 l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDl 102 (232)
T KOG4589|consen 67 LRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDL 102 (232)
T ss_pred cCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEee
Confidence 447889999999999999877664 22 37899997
|
|
| >PRK15116 sulfur acceptor protein CsdL; Provisional | Back alignment and domain information |
|---|
Probab=89.44 E-value=2.6 Score=33.53 Aligned_cols=38 Identities=32% Similarity=0.465 Sum_probs=30.1
Q ss_pred CCCCCcEEEeCCC-cc-HHHHHHHhcCCCeEEEEcCChHH
Q 038343 20 IFSNKSCFEVGSG-VG-LVGICLAHVKASKVTLTDGDHLT 57 (191)
Q Consensus 20 ~~~~~~VLElG~G-tG-~~~~~la~~g~~~v~~tD~~~~~ 57 (191)
.+.+.+|+=+||| .| .+...+++.|..+++.+|.+.-.
T Consensus 27 kL~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~V~ 66 (268)
T PRK15116 27 LFADAHICVVGIGGVGSWAAEALARTGIGAITLIDMDDVC 66 (268)
T ss_pred HhcCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCEec
Confidence 3567799999999 66 55568889998899999987443
|
|
| >KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=89.14 E-value=1.3 Score=34.72 Aligned_cols=112 Identities=11% Similarity=0.017 Sum_probs=59.5
Q ss_pred CCCCCCCCcEEEeCCCccHHHHHHHh-cCCC-eEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCC
Q 038343 17 FPEIFSNKSCFEVGSGVGLVGICLAH-VKAS-KVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWE 94 (191)
Q Consensus 17 ~~~~~~~~~VLElG~GtG~~~~~la~-~g~~-~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~ 94 (191)
+.+..++.+||=||+++|..--..+. .|.. -|++++.++-.=..+. |+..... +|.-+.-|-.
T Consensus 151 nihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~-nmAkkRt--------------NiiPIiEDAr 215 (317)
T KOG1596|consen 151 NIHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLI-NMAKKRT--------------NIIPIIEDAR 215 (317)
T ss_pred ceeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHH-HHhhccC--------------CceeeeccCC
Confidence 45566899999999999943333333 3332 6999998764433222 2211110 1111111111
Q ss_pred CCCcCCCCCCCCCEEE-EcccccC----CCChHHHHHHHHHHhccCCCCccccccCCCCcc
Q 038343 95 SASESGLSAFVPEIIL-GADILYD----RSCFPDLVRILAILLNRRKSVSSSRKESSKGFT 150 (191)
Q Consensus 95 ~~~~~~~~~~~fDvIi-~~d~ly~----~~~~~~ll~~l~~ll~~~g~~~~~~~~~~~~~~ 150 (191)
...+|-+.+ +-|+||. ++...-+.-..+.+|+++|..-+...++|..-+
T Consensus 216 -------hP~KYRmlVgmVDvIFaDvaqpdq~RivaLNA~~FLk~gGhfvisikancidst 269 (317)
T KOG1596|consen 216 -------HPAKYRMLVGMVDVIFADVAQPDQARIVALNAQYFLKNGGHFVISIKANCIDST 269 (317)
T ss_pred -------CchheeeeeeeEEEEeccCCCchhhhhhhhhhhhhhccCCeEEEEEeccccccc
Confidence 112343322 2344442 233444455667799999998888888885443
|
|
| >PRK06124 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.01 E-value=7.6 Score=29.83 Aligned_cols=79 Identities=15% Similarity=0.109 Sum_probs=48.2
Q ss_pred CCCCcEEEeCCCccHHH---HHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCC
Q 038343 21 FSNKSCFEVGSGVGLVG---ICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESAS 97 (191)
Q Consensus 21 ~~~~~VLElG~GtG~~~---~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~ 97 (191)
++++++|=.|++.|+-. ..+++.|+ +|++++.+++.++.+...++..+ .++.+...|..+..
T Consensus 9 ~~~k~ilItGas~~IG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~--------------~~~~~~~~Dl~~~~ 73 (256)
T PRK06124 9 LAGQVALVTGSARGLGFEIARALAGAGA-HVLVNGRNAATLEAAVAALRAAG--------------GAAEALAFDIADEE 73 (256)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHHhcC--------------CceEEEEccCCCHH
Confidence 56888998887655322 23455677 89999998877766655554433 23566677766543
Q ss_pred cCC-------CCCCCCCEEEEccc
Q 038343 98 ESG-------LSAFVPEIILGADI 114 (191)
Q Consensus 98 ~~~-------~~~~~fDvIi~~d~ 114 (191)
.-. ..-++.|.|+.+--
T Consensus 74 ~~~~~~~~~~~~~~~id~vi~~ag 97 (256)
T PRK06124 74 AVAAAFARIDAEHGRLDILVNNVG 97 (256)
T ss_pred HHHHHHHHHHHhcCCCCEEEECCC
Confidence 110 01246788886543
|
|
| >PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional | Back alignment and domain information |
|---|
Probab=88.94 E-value=1.9 Score=35.45 Aligned_cols=36 Identities=28% Similarity=0.402 Sum_probs=29.0
Q ss_pred CCCCCcEEEeCCC-cc-HHHHHHHhcCCCeEEEEcCCh
Q 038343 20 IFSNKSCFEVGSG-VG-LVGICLAHVKASKVTLTDGDH 55 (191)
Q Consensus 20 ~~~~~~VLElG~G-tG-~~~~~la~~g~~~v~~tD~~~ 55 (191)
.+.+.+||=+||| .| .++..+++.|..+++.+|.+.
T Consensus 21 ~L~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (338)
T PRK12475 21 KIREKHVLIVGAGALGAANAEALVRAGIGKLTIADRDY 58 (338)
T ss_pred hhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 3467799999999 55 455588889988999999874
|
|
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=88.46 E-value=0.5 Score=40.51 Aligned_cols=93 Identities=16% Similarity=0.150 Sum_probs=58.6
Q ss_pred CcEEEeCCCccHHHHHHHhcCC--CeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCCC
Q 038343 24 KSCFEVGSGVGLVGICLAHVKA--SKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESGL 101 (191)
Q Consensus 24 ~~VLElG~GtG~~~~~la~~g~--~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~~ 101 (191)
.+|+|+.+|.|.++..|..... -.|+-++. +..|..+ -..++ --...||.+....
T Consensus 367 RNVMDMnAg~GGFAAAL~~~~VWVMNVVP~~~-~ntL~vI----ydRGL----------------IG~yhDWCE~fsT-- 423 (506)
T PF03141_consen 367 RNVMDMNAGYGGFAAALIDDPVWVMNVVPVSG-PNTLPVI----YDRGL----------------IGVYHDWCEAFST-- 423 (506)
T ss_pred eeeeeecccccHHHHHhccCCceEEEecccCC-CCcchhh----hhccc----------------chhccchhhccCC--
Confidence 4899999999988877766532 13333321 2222221 12221 1245678765432
Q ss_pred CCCCCCEEEEcccccC---CCChHHHHHHHHHHhccCCCCc
Q 038343 102 SAFVPEIILGADILYD---RSCFPDLVRILAILLNRRKSVS 139 (191)
Q Consensus 102 ~~~~fDvIi~~d~ly~---~~~~~~ll~~l~~ll~~~g~~~ 139 (191)
-+..||+|-+..++-. .-.++.++-.+.++|+|+|...
T Consensus 424 YPRTYDLlHA~~lfs~~~~rC~~~~illEmDRILRP~G~~i 464 (506)
T PF03141_consen 424 YPRTYDLLHADGLFSLYKDRCEMEDILLEMDRILRPGGWVI 464 (506)
T ss_pred CCcchhheehhhhhhhhcccccHHHHHHHhHhhcCCCceEE
Confidence 2358999999877653 3458899999999999998544
|
; GO: 0008168 methyltransferase activity |
| >cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA | Back alignment and domain information |
|---|
Probab=88.34 E-value=1.4 Score=33.88 Aligned_cols=35 Identities=31% Similarity=0.450 Sum_probs=28.4
Q ss_pred CCCCcEEEeCCC-cc-HHHHHHHhcCCCeEEEEcCCh
Q 038343 21 FSNKSCFEVGSG-VG-LVGICLAHVKASKVTLTDGDH 55 (191)
Q Consensus 21 ~~~~~VLElG~G-tG-~~~~~la~~g~~~v~~tD~~~ 55 (191)
..+.+|+=+||| .| .+...+++.|..+++.+|.+.
T Consensus 19 L~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ 55 (228)
T cd00757 19 LKNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDV 55 (228)
T ss_pred HhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence 456799999999 56 556688889999999998764
|
Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1). |
| >COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=88.29 E-value=2 Score=35.36 Aligned_cols=95 Identities=20% Similarity=0.173 Sum_probs=58.3
Q ss_pred CCCcEEEeCCC-ccHHHHHHHh-cCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCc-
Q 038343 22 SNKSCFEVGSG-VGLVGICLAH-VKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASE- 98 (191)
Q Consensus 22 ~~~~VLElG~G-tG~~~~~la~-~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~- 98 (191)
++.+|+=+||| .|++++.+++ .|++.|+++|.+++-++.+++-....... ..... +...
T Consensus 168 ~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~-----------------~~~~~-~~~~~ 229 (350)
T COG1063 168 PGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVV-----------------NPSED-DAGAE 229 (350)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEee-----------------cCccc-cHHHH
Confidence 44489999999 8988775555 68889999999999888887522111000 00000 0000
Q ss_pred -CCCC-CCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCcc
Q 038343 99 -SGLS-AFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVSS 140 (191)
Q Consensus 99 -~~~~-~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~~ 140 (191)
.... ...+|+++=+- -....+....++++++|....
T Consensus 230 ~~~~t~g~g~D~vie~~------G~~~~~~~ai~~~r~gG~v~~ 267 (350)
T COG1063 230 ILELTGGRGADVVIEAV------GSPPALDQALEALRPGGTVVV 267 (350)
T ss_pred HHHHhCCCCCCEEEECC------CCHHHHHHHHHHhcCCCEEEE
Confidence 0011 12588887422 155678888889999986553
|
|
| >PRK08644 thiamine biosynthesis protein ThiF; Provisional | Back alignment and domain information |
|---|
Probab=88.20 E-value=3.9 Score=31.19 Aligned_cols=35 Identities=23% Similarity=0.343 Sum_probs=28.6
Q ss_pred CCCCCcEEEeCCC-cc-HHHHHHHhcCCCeEEEEcCC
Q 038343 20 IFSNKSCFEVGSG-VG-LVGICLAHVKASKVTLTDGD 54 (191)
Q Consensus 20 ~~~~~~VLElG~G-tG-~~~~~la~~g~~~v~~tD~~ 54 (191)
.++..+|+=+||| .| .+...+++.|..+++..|.+
T Consensus 25 ~L~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D 61 (212)
T PRK08644 25 KLKKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD 61 (212)
T ss_pred HHhCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 3467799999999 56 56668888898899999987
|
|
| >KOG2912 consensus Predicted DNA methylase [Function unknown] | Back alignment and domain information |
|---|
Probab=87.82 E-value=0.68 Score=37.61 Aligned_cols=78 Identities=18% Similarity=0.264 Sum_probs=46.7
Q ss_pred EEeCCCccHHHHHH---HhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCC-cC---
Q 038343 27 FEVGSGVGLVGICL---AHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESAS-ES--- 99 (191)
Q Consensus 27 LElG~GtG~~~~~l---a~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~-~~--- 99 (191)
+|+|.| ...++. +....-...+||++...++.++.|+..|++. ..+.+....-.+.. .+
T Consensus 107 iDIgtg--asci~~llg~rq~n~~f~~teidd~s~~~a~snV~qn~ls------------s~ikvV~~~~~ktll~d~~~ 172 (419)
T KOG2912|consen 107 IDIGTG--ASCIYPLLGARQNNWYFLATEIDDMSFNYAKSNVEQNNLS------------SLIKVVKVEPQKTLLMDALK 172 (419)
T ss_pred eeccCc--hhhhHHhhhchhccceeeeeeccccccchhhccccccccc------------cceeeEEecchhhcchhhhc
Confidence 577555 444432 2222237899999999999999999999876 23333332111110 00
Q ss_pred CCCCCCCCEEEEcccccCC
Q 038343 100 GLSAFVPEIILGADILYDR 118 (191)
Q Consensus 100 ~~~~~~fDvIi~~d~ly~~ 118 (191)
..++..||..+|+..+|..
T Consensus 173 ~~~e~~ydFcMcNPPFfe~ 191 (419)
T KOG2912|consen 173 EESEIIYDFCMCNPPFFEN 191 (419)
T ss_pred cCccceeeEEecCCchhhc
Confidence 1123459999998888755
|
|
| >PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated | Back alignment and domain information |
|---|
Probab=87.55 E-value=2.3 Score=34.97 Aligned_cols=35 Identities=29% Similarity=0.445 Sum_probs=28.5
Q ss_pred CCCCcEEEeCCC-cc-HHHHHHHhcCCCeEEEEcCCh
Q 038343 21 FSNKSCFEVGSG-VG-LVGICLAHVKASKVTLTDGDH 55 (191)
Q Consensus 21 ~~~~~VLElG~G-tG-~~~~~la~~g~~~v~~tD~~~ 55 (191)
+...+||=+||| .| .+...++..|..+++.+|.+.
T Consensus 22 L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (339)
T PRK07688 22 LREKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDY 58 (339)
T ss_pred hcCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCc
Confidence 466799999999 56 455688888988999999864
|
|
| >PRK05708 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=87.43 E-value=5.4 Score=32.17 Aligned_cols=94 Identities=22% Similarity=0.078 Sum_probs=52.2
Q ss_pred CcEEEeCCC--ccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCCC
Q 038343 24 KSCFEVGSG--VGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESGL 101 (191)
Q Consensus 24 ~~VLElG~G--tG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~~ 101 (191)
++|+=+|+| -|.++..+++.|. .|++++.+.+-++.+++ .+++.... ......+ ....... .
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~-~V~lv~r~~~~~~~i~~---~~Gl~i~~-------~g~~~~~-~~~~~~~--~-- 66 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGL-PVRLILRDRQRLAAYQQ---AGGLTLVE-------QGQASLY-AIPAETA--D-- 66 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCC-CeEEEEechHHHHHHhh---cCCeEEee-------CCcceee-ccCCCCc--c--
Confidence 468889999 4478888888886 89999987655555543 12221100 0000111 1111111 1
Q ss_pred CCCCCCEEEEcccccCCCChHHHHHHHHHHhccCC
Q 038343 102 SAFVPEIILGADILYDRSCFPDLVRILAILLNRRK 136 (191)
Q Consensus 102 ~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g 136 (191)
....||+|+.+-=- .+.+..++.++.++.++.
T Consensus 67 ~~~~~D~viv~vK~---~~~~~al~~l~~~l~~~t 98 (305)
T PRK05708 67 AAEPIHRLLLACKA---YDAEPAVASLAHRLAPGA 98 (305)
T ss_pred cccccCEEEEECCH---HhHHHHHHHHHhhCCCCC
Confidence 12479999864222 235667777877787763
|
|
| >PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised | Back alignment and domain information |
|---|
Probab=87.39 E-value=2.7 Score=35.11 Aligned_cols=60 Identities=12% Similarity=0.100 Sum_probs=39.7
Q ss_pred cccccHHHHHHHHhhCCCCCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHH
Q 038343 2 SIWPSSLLLSEFILSFPEIFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLE 66 (191)
Q Consensus 2 ~~W~~a~~L~~~l~~~~~~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~ 66 (191)
.+|+...+.-+.|.-. ++.+||=|.+| |-..+.+...++++|+++|.||.-+..++-++.
T Consensus 19 ~~WEDp~vD~~aL~i~----~~d~vl~ItSa-G~N~L~yL~~~P~~I~aVDlNp~Q~aLleLKlA 78 (380)
T PF11899_consen 19 QCWEDPRVDMEALNIG----PDDRVLTITSA-GCNALDYLLAGPKRIHAVDLNPAQNALLELKLA 78 (380)
T ss_pred cccCCcHHHHHHhCCC----CCCeEEEEccC-CchHHHHHhcCCceEEEEeCCHHHHHHHHHHHH
Confidence 4688877776665433 56689999544 333333344556799999999987766654443
|
This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length. |
| >cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins | Back alignment and domain information |
|---|
Probab=87.35 E-value=3.9 Score=28.81 Aligned_cols=31 Identities=35% Similarity=0.487 Sum_probs=23.7
Q ss_pred cEEEeCCC-cc-HHHHHHHhcCCCeEEEEcCCh
Q 038343 25 SCFEVGSG-VG-LVGICLAHVKASKVTLTDGDH 55 (191)
Q Consensus 25 ~VLElG~G-tG-~~~~~la~~g~~~v~~tD~~~ 55 (191)
+|+=+||| .| .+...+++.|..+++.+|.+.
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~ 33 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDT 33 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCC
Confidence 47778988 55 455578888888999999763
|
This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. |
| >PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases | Back alignment and domain information |
|---|
Probab=87.27 E-value=1.1 Score=32.01 Aligned_cols=77 Identities=17% Similarity=0.034 Sum_probs=41.6
Q ss_pred eEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCCCCCCCCCEEEEcccccCC--------
Q 038343 47 KVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESGLSAFVPEIILGADILYDR-------- 118 (191)
Q Consensus 47 ~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~~~~~~fDvIi~~d~ly~~-------- 118 (191)
+|++.|+.+++++..++.++.++.. .++.+..-.-+... ...+.+++|.++.+ .=|-|
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~------------~~v~li~~sHe~l~-~~i~~~~v~~~iFN-LGYLPggDk~i~T 66 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLE------------DRVTLILDSHENLD-EYIPEGPVDAAIFN-LGYLPGGDKSITT 66 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-G------------SGEEEEES-GGGGG-GT--S--EEEEEEE-ESB-CTS-TTSB-
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCC------------CcEEEEECCHHHHH-hhCccCCcCEEEEE-CCcCCCCCCCCCc
Confidence 5899999999999999999988754 23444333222111 11222367777653 11211
Q ss_pred --CChHHHHHHHHHHhccCCC
Q 038343 119 --SCFPDLVRILAILLNRRKS 137 (191)
Q Consensus 119 --~~~~~ll~~l~~ll~~~g~ 137 (191)
+..-..++....+|+++|.
T Consensus 67 ~~~TTl~Al~~al~lL~~gG~ 87 (140)
T PF06962_consen 67 KPETTLKALEAALELLKPGGI 87 (140)
T ss_dssp -HHHHHHHHHHHHHHEEEEEE
T ss_pred CcHHHHHHHHHHHHhhccCCE
Confidence 2233445555667788864
|
; PDB: 3EEY_H 3LBY_A 3MTI_A. |
| >PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) [] | Back alignment and domain information |
|---|
Probab=87.22 E-value=2.4 Score=32.31 Aligned_cols=100 Identities=16% Similarity=0.024 Sum_probs=48.1
Q ss_pred CCCcEEEeCCCccHHHHHHHh----c-CCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCC
Q 038343 22 SNKSCFEVGSGVGLVGICLAH----V-KASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESA 96 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~----~-g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~ 96 (191)
+...|+|+|.-.|-..++.|. + +..+|+++|++....... .++.... ..+|++.+.+..+.
T Consensus 32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~--a~e~hp~------------~~rI~~i~Gds~d~ 97 (206)
T PF04989_consen 32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRK--AIESHPM------------SPRITFIQGDSIDP 97 (206)
T ss_dssp --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S---GGGG----------------TTEEEEES-SSST
T ss_pred CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchH--HHhhccc------------cCceEEEECCCCCH
Confidence 445899999988866665543 3 335999999964322111 1111111 14688888876554
Q ss_pred CcC----CC-CCCCCCEEEEcccccCCCChHHHHHHHHHHhccCC
Q 038343 97 SES----GL-SAFVPEIILGADILYDRSCFPDLVRILAILLNRRK 136 (191)
Q Consensus 97 ~~~----~~-~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g 136 (191)
... .. ......+ +.-|.=|.....-..++....++++|+
T Consensus 98 ~~~~~v~~~~~~~~~vl-VilDs~H~~~hvl~eL~~y~plv~~G~ 141 (206)
T PF04989_consen 98 EIVDQVRELASPPHPVL-VILDSSHTHEHVLAELEAYAPLVSPGS 141 (206)
T ss_dssp HHHHTSGSS----SSEE-EEESS----SSHHHHHHHHHHT--TT-
T ss_pred HHHHHHHHhhccCCceE-EEECCCccHHHHHHHHHHhCccCCCCC
Confidence 311 11 1122334 444776777788888888999999985
|
Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E. |
| >PRK10458 DNA cytosine methylase; Provisional | Back alignment and domain information |
|---|
Probab=87.19 E-value=1.6 Score=37.57 Aligned_cols=43 Identities=9% Similarity=0.138 Sum_probs=36.8
Q ss_pred CCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHH
Q 038343 23 NKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNL 65 (191)
Q Consensus 23 ~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~ 65 (191)
..+++||.||.|.+++-+-..|...|.+.|+++.+.+.-+.|.
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~aG~~~v~a~Eid~~A~~TY~~N~ 130 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAIGGQCVFTSEWNKHAVRTYKANW 130 (467)
T ss_pred CceEEEeCcCccHHHHHHHHcCCEEEEEEechHHHHHHHHHHc
Confidence 4589999999999888888888777899999998888777764
|
|
| >PLN02668 indole-3-acetate carboxyl methyltransferase | Back alignment and domain information |
|---|
Probab=87.00 E-value=3.6 Score=34.48 Aligned_cols=26 Identities=19% Similarity=0.000 Sum_probs=19.9
Q ss_pred cCCCCCCCCCEEEEcccccCCCChHH
Q 038343 98 ESGLSAFVPEIILGADILYDRSCFPD 123 (191)
Q Consensus 98 ~~~~~~~~fDvIi~~d~ly~~~~~~~ 123 (191)
...++.++.+++.++-.+++....+.
T Consensus 155 ~RLfP~~Slh~~~Ss~slHWLS~vP~ 180 (386)
T PLN02668 155 RRLFPARSIDVFHSAFSLHWLSQVPE 180 (386)
T ss_pred ccccCCCceEEEEeeccceecccCch
Confidence 33467789999999999998775554
|
|
| >cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1 | Back alignment and domain information |
|---|
Probab=86.47 E-value=11 Score=30.27 Aligned_cols=36 Identities=22% Similarity=0.283 Sum_probs=27.3
Q ss_pred CCCCcEEEeCCC-cc-HHHHHHHhcCCCeEEEEcCChH
Q 038343 21 FSNKSCFEVGSG-VG-LVGICLAHVKASKVTLTDGDHL 56 (191)
Q Consensus 21 ~~~~~VLElG~G-tG-~~~~~la~~g~~~v~~tD~~~~ 56 (191)
+...+||=+||| .| -++..++..|.++++..|.+.-
T Consensus 17 L~~s~VLIvG~gGLG~EiaKnLalaGVg~itI~D~d~v 54 (286)
T cd01491 17 LQKSNVLISGLGGLGVEIAKNLILAGVKSVTLHDTKPC 54 (286)
T ss_pred HhcCcEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcc
Confidence 356689999998 55 3444778889899999997643
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1. |
| >KOG0725 consensus Reductases with broad range of substrate specificities [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.37 E-value=15 Score=29.17 Aligned_cols=116 Identities=16% Similarity=0.069 Sum_probs=70.3
Q ss_pred CCCCCCcEEEeCCCcc---HHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCC
Q 038343 19 EIFSNKSCFEVGSGVG---LVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWES 95 (191)
Q Consensus 19 ~~~~~~~VLElG~GtG---~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~ 95 (191)
..+.++.+|-=|++.| .++..+++.|+ +|+.++.+++.++.....+...+.. ..++.....|..+
T Consensus 4 ~~l~gkvalVTG~s~GIG~aia~~la~~Ga-~v~i~~r~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~Dv~~ 71 (270)
T KOG0725|consen 4 GRLAGKVALVTGGSSGIGKAIALLLAKAGA-KVVITGRSEERLEETAQELGGLGYT-----------GGKVLAIVCDVSK 71 (270)
T ss_pred ccCCCcEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCC-----------CCeeEEEECcCCC
Confidence 3467889999998887 45567888998 8999999998888777665554422 1345555556543
Q ss_pred CCcCC-------CC-CCCCCEEEEcccccCCC---------------------ChHHHHHHHHHHhccCCCCccccccCC
Q 038343 96 ASESG-------LS-AFVPEIILGADILYDRS---------------------CFPDLVRILAILLNRRKSVSSSRKESS 146 (191)
Q Consensus 96 ~~~~~-------~~-~~~fDvIi~~d~ly~~~---------------------~~~~ll~~l~~ll~~~g~~~~~~~~~~ 146 (191)
..... .. .++.|+++.+.-.-... ..-.+...+..+++.+++...++.++.
T Consensus 72 ~~~~~~l~~~~~~~~~GkidiLvnnag~~~~~~~~~~~s~e~~d~~~~~Nl~G~~~~~~~~a~~~~~~~~gg~I~~~ss~ 151 (270)
T KOG0725|consen 72 EVDVEKLVEFAVEKFFGKIDILVNNAGALGLTGSILDLSEEVFDKIMATNLRGSAFCLKQAARPMLKKSKGGSIVNISSV 151 (270)
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEcCCcCCCCCChhhCCHHHHHHHHhhhchhHHHHHHHHHHHHHHhcCCceEEEEecc
Confidence 32110 11 35788888644333221 123344455567777655555555544
|
|
| >COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=86.35 E-value=1.8 Score=36.23 Aligned_cols=72 Identities=19% Similarity=0.259 Sum_probs=45.0
Q ss_pred CcEEEeCCC-cc-HHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcC-C
Q 038343 24 KSCFEVGSG-VG-LVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASES-G 100 (191)
Q Consensus 24 ~~VLElG~G-tG-~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~-~ 100 (191)
++||=|||| .| .....+++.+..+|+..|.+.+....+..+.. .++++..+|..+...- .
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~-----------------~~v~~~~vD~~d~~al~~ 64 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIG-----------------GKVEALQVDAADVDALVA 64 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhcc-----------------ccceeEEecccChHHHHH
Confidence 479999997 55 33335677775699999998776655543321 2466777776655321 1
Q ss_pred CCCCCCCEEEEcc
Q 038343 101 LSAFVPEIILGAD 113 (191)
Q Consensus 101 ~~~~~fDvIi~~d 113 (191)
+- ..+|+||.+-
T Consensus 65 li-~~~d~VIn~~ 76 (389)
T COG1748 65 LI-KDFDLVINAA 76 (389)
T ss_pred HH-hcCCEEEEeC
Confidence 11 2468888643
|
|
| >KOG1331 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.33 E-value=1.7 Score=34.65 Aligned_cols=93 Identities=11% Similarity=-0.044 Sum_probs=57.4
Q ss_pred CCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCCC
Q 038343 22 SNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESGL 101 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~~ 101 (191)
.+..++|.|||.|-.... .....+++.|.+...+.-+++ .+. . .+..-|.-. ...
T Consensus 45 ~gsv~~d~gCGngky~~~---~p~~~~ig~D~c~~l~~~ak~---~~~--------------~--~~~~ad~l~---~p~ 99 (293)
T KOG1331|consen 45 TGSVGLDVGCGNGKYLGV---NPLCLIIGCDLCTGLLGGAKR---SGG--------------D--NVCRADALK---LPF 99 (293)
T ss_pred CcceeeecccCCcccCcC---CCcceeeecchhhhhcccccc---CCC--------------c--eeehhhhhc---CCC
Confidence 366899999999832211 111268888887666554432 111 0 111112111 123
Q ss_pred CCCCCCEEEEcccccCCC---ChHHHHHHHHHHhccCCCCc
Q 038343 102 SAFVPEIILGADILYDRS---CFPDLVRILAILLNRRKSVS 139 (191)
Q Consensus 102 ~~~~fDvIi~~d~ly~~~---~~~~ll~~l~~ll~~~g~~~ 139 (191)
...+||..+..-++++.. .-..+++.+.+.++|+|...
T Consensus 100 ~~~s~d~~lsiavihhlsT~~RR~~~l~e~~r~lrpgg~~l 140 (293)
T KOG1331|consen 100 REESFDAALSIAVIHHLSTRERRERALEELLRVLRPGGNAL 140 (293)
T ss_pred CCCccccchhhhhhhhhhhHHHHHHHHHHHHHHhcCCCceE
Confidence 446899999999999765 45677888888999999844
|
|
| >PRK07904 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=86.07 E-value=13 Score=28.70 Aligned_cols=78 Identities=6% Similarity=0.010 Sum_probs=44.6
Q ss_pred CCCcEEEeCCCccHHHH---HHHhcCCCeEEEEcCChHH-HHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCC
Q 038343 22 SNKSCFEVGSGVGLVGI---CLAHVKASKVTLTDGDHLT-LANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESAS 97 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~---~la~~g~~~v~~tD~~~~~-l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~ 97 (191)
.+++||=.|++.|+-.. .+++.|..+|++++.+++- ++.+.+.++..+. .++.+..+|..+..
T Consensus 7 ~~~~vlItGas~giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~~-------------~~v~~~~~D~~~~~ 73 (253)
T PRK07904 7 NPQTILLLGGTSEIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAGA-------------SSVEVIDFDALDTD 73 (253)
T ss_pred CCcEEEEEcCCcHHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcCC-------------CceEEEEecCCChH
Confidence 45678888887663222 3344543489999987664 6555554544321 24666777775543
Q ss_pred cC-----C-CCCCCCCEEEEc
Q 038343 98 ES-----G-LSAFVPEIILGA 112 (191)
Q Consensus 98 ~~-----~-~~~~~fDvIi~~ 112 (191)
.- . ...+..|+++.+
T Consensus 74 ~~~~~~~~~~~~g~id~li~~ 94 (253)
T PRK07904 74 SHPKVIDAAFAGGDVDVAIVA 94 (253)
T ss_pred HHHHHHHHHHhcCCCCEEEEe
Confidence 20 0 112478987753
|
|
| >PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=86.04 E-value=2.7 Score=31.19 Aligned_cols=119 Identities=16% Similarity=0.135 Sum_probs=56.6
Q ss_pred EEEeCCC-cc-HHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCC----CCcccccccCCCCeeEEEeecCCCCCcC
Q 038343 26 CFEVGSG-VG-LVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLS----TDTSLLESYEDPNVVQCVHLPWESASES 99 (191)
Q Consensus 26 VLElG~G-tG-~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~----~~~~~~~~~~~~~~i~~~~ldw~~~~~~ 99 (191)
|-=+|+| -| .++..++..|. +|++.|.+++.++.+++.+..+-.. .............++. +.....
T Consensus 2 V~ViGaG~mG~~iA~~~a~~G~-~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~-----~~~dl~- 74 (180)
T PF02737_consen 2 VAVIGAGTMGRGIAALFARAGY-EVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARIS-----FTTDLE- 74 (180)
T ss_dssp EEEES-SHHHHHHHHHHHHTTS-EEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEE-----EESSGG-
T ss_pred EEEEcCCHHHHHHHHHHHhCCC-cEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcc-----cccCHH-
Confidence 4557887 33 44445666776 9999999999998887766542110 0000000000001122 111111
Q ss_pred CCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCccccccCCCCcccccccCCC
Q 038343 100 GLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVSSSRKESSKGFTLDTKCNTN 158 (191)
Q Consensus 100 ~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~~~~~~~~~~~~~~~~~~~~ 158 (191)
.. ...|+|+=+ +..+.+.-..+++.+.+++.|+ +++.+...+.+....++.-
T Consensus 75 ~~--~~adlViEa-i~E~l~~K~~~~~~l~~~~~~~----~ilasnTSsl~i~~la~~~ 126 (180)
T PF02737_consen 75 EA--VDADLVIEA-IPEDLELKQELFAELDEICPPD----TILASNTSSLSISELAAAL 126 (180)
T ss_dssp GG--CTESEEEE--S-SSHHHHHHHHHHHHCCS-TT----SEEEE--SSS-HHHHHTTS
T ss_pred HH--hhhheehhh-ccccHHHHHHHHHHHHHHhCCC----ceEEecCCCCCHHHHHhcc
Confidence 11 157888753 2223334456666666666666 4555666666665555553
|
1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B .... |
| >PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures [] | Back alignment and domain information |
|---|
Probab=86.01 E-value=1.9 Score=34.04 Aligned_cols=34 Identities=24% Similarity=0.320 Sum_probs=26.9
Q ss_pred CCCCcEEEeCCCccHHHHHHHhcC------CCeEEEEcCC
Q 038343 21 FSNKSCFEVGSGVGLVGICLAHVK------ASKVTLTDGD 54 (191)
Q Consensus 21 ~~~~~VLElG~GtG~~~~~la~~g------~~~v~~tD~~ 54 (191)
.++..++|+|||.|.++.+++..- ...++++|..
T Consensus 17 ~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~ 56 (259)
T PF05206_consen 17 NPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRA 56 (259)
T ss_pred CCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecC
Confidence 456689999999999998777642 3489999974
|
The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing |
| >PRK08339 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=86.01 E-value=14 Score=28.75 Aligned_cols=79 Identities=20% Similarity=0.209 Sum_probs=47.8
Q ss_pred CCCCcEEEeCCCccH---HHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCC
Q 038343 21 FSNKSCFEVGSGVGL---VGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESAS 97 (191)
Q Consensus 21 ~~~~~VLElG~GtG~---~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~ 97 (191)
+.++.+|=.|++.|+ ++..+++.|+ +|++++.++..++.+.+.+..... .++.+...|..+..
T Consensus 6 l~~k~~lItGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~-------------~~~~~~~~Dv~~~~ 71 (263)
T PRK08339 6 LSGKLAFTTASSKGIGFGVARVLARAGA-DVILLSRNEENLKKAREKIKSESN-------------VDVSYIVADLTKRE 71 (263)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhcC-------------CceEEEEecCCCHH
Confidence 467788888887663 3445666787 899999988777666655433210 23555666665542
Q ss_pred cCC------CCCCCCCEEEEcc
Q 038343 98 ESG------LSAFVPEIILGAD 113 (191)
Q Consensus 98 ~~~------~~~~~fDvIi~~d 113 (191)
... ..-+..|+++.+-
T Consensus 72 ~i~~~~~~~~~~g~iD~lv~na 93 (263)
T PRK08339 72 DLERTVKELKNIGEPDIFFFST 93 (263)
T ss_pred HHHHHHHHHHhhCCCcEEEECC
Confidence 110 0124688887643
|
|
| >KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=85.92 E-value=1.6 Score=37.23 Aligned_cols=100 Identities=15% Similarity=0.044 Sum_probs=53.5
Q ss_pred CCCCCcEEEeCCCccHHHHHH---HhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCC
Q 038343 20 IFSNKSCFEVGSGVGLVGICL---AHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESA 96 (191)
Q Consensus 20 ~~~~~~VLElG~GtG~~~~~l---a~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~ 96 (191)
.+....++++|+|.|.-.-++ ...-...|+.+|.+..|+.....+... +... ..+.+..+.+-..
T Consensus 198 ~f~pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~-~~~~-----------g~~~v~~~~~~r~ 265 (491)
T KOG2539|consen 198 KFRPDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRD-GSHI-----------GEPIVRKLVFHRQ 265 (491)
T ss_pred ccChHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcC-hhhc-----------Cchhccccchhcc
Confidence 445557888988866322222 222234899999999998888776643 1110 1111222111111
Q ss_pred CcCCCCCCCCCEEEEcccccCCCChHHHHHHHHHH
Q 038343 97 SESGLSAFVPEIILGADILYDRSCFPDLVRILAIL 131 (191)
Q Consensus 97 ~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~l 131 (191)
.-.......||+||++..++....-..=+.....+
T Consensus 266 ~~pi~~~~~yDlvi~ah~l~~~~s~~~R~~v~~s~ 300 (491)
T KOG2539|consen 266 RLPIDIKNGYDLVICAHKLHELGSKFSRLDVPESL 300 (491)
T ss_pred cCCCCcccceeeEEeeeeeeccCCchhhhhhhHHH
Confidence 00111234699999999998765444333333333
|
|
| >PRK08762 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=85.75 E-value=2.7 Score=34.97 Aligned_cols=34 Identities=21% Similarity=0.418 Sum_probs=27.9
Q ss_pred CCCCcEEEeCCC-cc-HHHHHHHhcCCCeEEEEcCC
Q 038343 21 FSNKSCFEVGSG-VG-LVGICLAHVKASKVTLTDGD 54 (191)
Q Consensus 21 ~~~~~VLElG~G-tG-~~~~~la~~g~~~v~~tD~~ 54 (191)
+.+.+|+=+||| .| .+...+++.|..+++.+|.+
T Consensus 133 l~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d 168 (376)
T PRK08762 133 LLEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHD 168 (376)
T ss_pred HhcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 467799999998 55 45568888999999999987
|
|
| >PRK07109 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=85.65 E-value=14 Score=30.04 Aligned_cols=79 Identities=13% Similarity=0.082 Sum_probs=48.2
Q ss_pred CCCCcEEEeCCCccH---HHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCC
Q 038343 21 FSNKSCFEVGSGVGL---VGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESAS 97 (191)
Q Consensus 21 ~~~~~VLElG~GtG~---~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~ 97 (191)
.++++||=.|++.|+ +...+++.|+ +|++++.++..++.+.+.+...+ .++.+...|..+..
T Consensus 6 l~~k~vlITGas~gIG~~la~~la~~G~-~Vvl~~R~~~~l~~~~~~l~~~g--------------~~~~~v~~Dv~d~~ 70 (334)
T PRK07109 6 IGRQVVVITGASAGVGRATARAFARRGA-KVVLLARGEEGLEALAAEIRAAG--------------GEALAVVADVADAE 70 (334)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcC--------------CcEEEEEecCCCHH
Confidence 456788888876553 2334566777 89999998877776666555433 23555666765543
Q ss_pred cCC-------CCCCCCCEEEEccc
Q 038343 98 ESG-------LSAFVPEIILGADI 114 (191)
Q Consensus 98 ~~~-------~~~~~fDvIi~~d~ 114 (191)
.-. ..-++.|++|.+--
T Consensus 71 ~v~~~~~~~~~~~g~iD~lInnAg 94 (334)
T PRK07109 71 AVQAAADRAEEELGPIDTWVNNAM 94 (334)
T ss_pred HHHHHHHHHHHHCCCCCEEEECCC
Confidence 210 01246899886543
|
|
| >PRK12749 quinate/shikimate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=85.59 E-value=10 Score=30.42 Aligned_cols=37 Identities=16% Similarity=0.079 Sum_probs=27.4
Q ss_pred CCCCCcEEEeCCCccHHHH--HHHhcCCCeEEEEcCChH
Q 038343 20 IFSNKSCFEVGSGVGLVGI--CLAHVKASKVTLTDGDHL 56 (191)
Q Consensus 20 ~~~~~~VLElG~GtG~~~~--~la~~g~~~v~~tD~~~~ 56 (191)
..+++++|=||||--.-++ .++..|.++++.++.+++
T Consensus 121 ~~~~k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~~ 159 (288)
T PRK12749 121 DIKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDE 159 (288)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCcc
Confidence 3567899999999544443 456678889999998754
|
|
| >COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=84.98 E-value=6.5 Score=31.81 Aligned_cols=54 Identities=13% Similarity=0.067 Sum_probs=40.2
Q ss_pred hCCCCCCCCcEEEeCCCccHHHH-HHHhcCC-CeEEEEcCChHHHHHHHHHHHHhc
Q 038343 16 SFPEIFSNKSCFEVGSGVGLVGI-CLAHVKA-SKVTLTDGDHLTLANMRSNLELNQ 69 (191)
Q Consensus 16 ~~~~~~~~~~VLElG~GtG~~~~-~la~~g~-~~v~~tD~~~~~l~~~~~n~~~n~ 69 (191)
......++...+|.-=|.|.-+. .+.+++. .++++.|.++.+++.+++....+.
T Consensus 17 ~~L~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~ 72 (314)
T COG0275 17 ELLAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD 72 (314)
T ss_pred HhcccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC
Confidence 33334466799999888876666 5555542 379999999999999998776654
|
|
| >COG0863 DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=84.43 E-value=5.7 Score=31.48 Aligned_cols=58 Identities=14% Similarity=0.098 Sum_probs=45.9
Q ss_pred HHHHHhhCCCCCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhc
Q 038343 10 LSEFILSFPEIFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQ 69 (191)
Q Consensus 10 L~~~l~~~~~~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~ 69 (191)
|.+.+... ...++..|||--+|+|.+++++.+.|- .+++.|++++-++.+.+.+....
T Consensus 211 l~~r~i~~-~s~~~diVlDpf~GsGtt~~aa~~~~r-~~ig~e~~~~y~~~~~~r~~~~~ 268 (302)
T COG0863 211 LIERLIRD-YSFPGDIVLDPFAGSGTTGIAAKNLGR-RFIGIEINPEYVEVALKRLQEGL 268 (302)
T ss_pred HHHHHHHh-cCCCCCEEeecCCCCChHHHHHHHcCC-ceEEEecCHHHHHHHHHHHHhhc
Confidence 33333333 456788999999999999999998875 89999999999988887776544
|
|
| >PRK05597 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=84.43 E-value=3.6 Score=34.05 Aligned_cols=35 Identities=23% Similarity=0.387 Sum_probs=28.4
Q ss_pred CCCCcEEEeCCC-cc-HHHHHHHhcCCCeEEEEcCCh
Q 038343 21 FSNKSCFEVGSG-VG-LVGICLAHVKASKVTLTDGDH 55 (191)
Q Consensus 21 ~~~~~VLElG~G-tG-~~~~~la~~g~~~v~~tD~~~ 55 (191)
+.+.+||=+||| .| .+...++..|.++++.+|.+.
T Consensus 26 L~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ 62 (355)
T PRK05597 26 LFDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDT 62 (355)
T ss_pred HhCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 467799999999 56 455588889999999999864
|
|
| >KOG3115 consensus Methyltransferase-like protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.08 E-value=1.8 Score=33.02 Aligned_cols=46 Identities=11% Similarity=0.057 Sum_probs=35.5
Q ss_pred CcEEEeCCCccHHHHHHHhcCCC-eEEEEcCChHHHHHHHHHHHHhc
Q 038343 24 KSCFEVGSGVGLVGICLAHVKAS-KVTLTDGDHLTLANMRSNLELNQ 69 (191)
Q Consensus 24 ~~VLElG~GtG~~~~~la~~g~~-~v~~tD~~~~~l~~~~~n~~~n~ 69 (191)
-.+.|||||-|-+-+.++-..+. .+.+.++-..+-+.+++.|.+-.
T Consensus 62 vefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR 108 (249)
T KOG3115|consen 62 VEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALR 108 (249)
T ss_pred ceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHh
Confidence 36899999999777777766443 78888887788888888776544
|
|
| >cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1 | Back alignment and domain information |
|---|
Probab=83.67 E-value=4.9 Score=33.35 Aligned_cols=44 Identities=25% Similarity=0.215 Sum_probs=32.6
Q ss_pred CCCCCcEEEeCCCc-cHHHHHHHh-cCCCeEEEEcCChHHHHHHHH
Q 038343 20 IFSNKSCFEVGSGV-GLVGICLAH-VKASKVTLTDGDHLTLANMRS 63 (191)
Q Consensus 20 ~~~~~~VLElG~Gt-G~~~~~la~-~g~~~v~~tD~~~~~l~~~~~ 63 (191)
..++.+||.+|+|+ |...+.+++ .|..+++++|.+++.++.+++
T Consensus 182 ~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~ 227 (386)
T cd08283 182 VKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARS 227 (386)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH
Confidence 44678999999885 766665544 565569999999888777765
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T |
| >PRK07523 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=83.65 E-value=18 Score=27.76 Aligned_cols=79 Identities=18% Similarity=0.202 Sum_probs=46.1
Q ss_pred CCCCcEEEeCCCccHHHH----HHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCC
Q 038343 21 FSNKSCFEVGSGVGLVGI----CLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESA 96 (191)
Q Consensus 21 ~~~~~VLElG~GtG~~~~----~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~ 96 (191)
+.+++||=.|+..| +|. .+++.|. +|++++.++..++.+...++..+ .++.+...|..+.
T Consensus 8 ~~~k~vlItGa~g~-iG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~i~~~~--------------~~~~~~~~D~~~~ 71 (255)
T PRK07523 8 LTGRRALVTGSSQG-IGYALAEGLAQAGA-EVILNGRDPAKLAAAAESLKGQG--------------LSAHALAFDVTDH 71 (255)
T ss_pred CCCCEEEEECCcch-HHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcC--------------ceEEEEEccCCCH
Confidence 46788998886443 333 3445676 89999998876666555554322 2355566666543
Q ss_pred CcCC-------CCCCCCCEEEEcccc
Q 038343 97 SESG-------LSAFVPEIILGADIL 115 (191)
Q Consensus 97 ~~~~-------~~~~~fDvIi~~d~l 115 (191)
.... ..-++.|+|+.+--.
T Consensus 72 ~~~~~~~~~~~~~~~~~d~li~~ag~ 97 (255)
T PRK07523 72 DAVRAAIDAFEAEIGPIDILVNNAGM 97 (255)
T ss_pred HHHHHHHHHHHHhcCCCCEEEECCCC
Confidence 2110 012458888865433
|
|
| >PRK08085 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=83.63 E-value=18 Score=27.74 Aligned_cols=79 Identities=13% Similarity=0.093 Sum_probs=47.2
Q ss_pred CCCCcEEEeCCCccH---HHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCC
Q 038343 21 FSNKSCFEVGSGVGL---VGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESAS 97 (191)
Q Consensus 21 ~~~~~VLElG~GtG~---~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~ 97 (191)
+.++++|=.|++.|+ +...+++.|+ +|++++.++..++.+...+...+ ..+.....|+.+..
T Consensus 7 l~~k~~lItGas~giG~~ia~~L~~~G~-~vvl~~r~~~~~~~~~~~l~~~~--------------~~~~~~~~Dl~~~~ 71 (254)
T PRK08085 7 LAGKNILITGSAQGIGFLLATGLAEYGA-EIIINDITAERAELAVAKLRQEG--------------IKAHAAPFNVTHKQ 71 (254)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHHHHhcC--------------CeEEEEecCCCCHH
Confidence 357788888877653 3334556676 89999998776665554443322 23455666765543
Q ss_pred cCC-------CCCCCCCEEEEccc
Q 038343 98 ESG-------LSAFVPEIILGADI 114 (191)
Q Consensus 98 ~~~-------~~~~~fDvIi~~d~ 114 (191)
... -..+++|+|+.+--
T Consensus 72 ~~~~~~~~~~~~~~~id~vi~~ag 95 (254)
T PRK08085 72 EVEAAIEHIEKDIGPIDVLINNAG 95 (254)
T ss_pred HHHHHHHHHHHhcCCCCEEEECCC
Confidence 110 01246899887544
|
|
| >KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=83.56 E-value=4 Score=32.83 Aligned_cols=49 Identities=20% Similarity=0.205 Sum_probs=39.6
Q ss_pred CCCCCcEEEeCCCcc---HHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhc
Q 038343 20 IFSNKSCFEVGSGVG---LVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQ 69 (191)
Q Consensus 20 ~~~~~~VLElG~GtG---~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~ 69 (191)
...|+.||==|+|.| .+++.+|++|+ ++...|++.+..+...+.++.++
T Consensus 35 ~v~g~~vLITGgg~GlGr~ialefa~rg~-~~vl~Din~~~~~etv~~~~~~g 86 (300)
T KOG1201|consen 35 SVSGEIVLITGGGSGLGRLIALEFAKRGA-KLVLWDINKQGNEETVKEIRKIG 86 (300)
T ss_pred hccCCEEEEeCCCchHHHHHHHHHHHhCC-eEEEEeccccchHHHHHHHHhcC
Confidence 457888999999988 56667888988 89999999988887777776654
|
|
| >PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] | Back alignment and domain information |
|---|
Probab=83.28 E-value=2.5 Score=31.55 Aligned_cols=37 Identities=27% Similarity=0.320 Sum_probs=23.6
Q ss_pred cEEEeCCC-ccH-HHHHHHhcCCCeEEEEcCChHHHHHHH
Q 038343 25 SCFEVGSG-VGL-VGICLAHVKASKVTLTDGDHLTLANMR 62 (191)
Q Consensus 25 ~VLElG~G-tG~-~~~~la~~g~~~v~~tD~~~~~l~~~~ 62 (191)
+|-=+|.| .|+ ++..+|..|. +|+++|.+++.++.++
T Consensus 2 ~I~ViGlGyvGl~~A~~lA~~G~-~V~g~D~~~~~v~~l~ 40 (185)
T PF03721_consen 2 KIAVIGLGYVGLPLAAALAEKGH-QVIGVDIDEEKVEALN 40 (185)
T ss_dssp EEEEE--STTHHHHHHHHHHTTS-EEEEE-S-HHHHHHHH
T ss_pred EEEEECCCcchHHHHHHHHhCCC-EEEEEeCChHHHHHHh
Confidence 45556777 664 4447777886 9999999998776654
|
The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D .... |
| >cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3 | Back alignment and domain information |
|---|
Probab=83.15 E-value=6.2 Score=31.79 Aligned_cols=32 Identities=22% Similarity=0.300 Sum_probs=24.1
Q ss_pred cEEEeCCC-cc-HHHHHHHhcCCCeEEEEcCChH
Q 038343 25 SCFEVGSG-VG-LVGICLAHVKASKVTLTDGDHL 56 (191)
Q Consensus 25 ~VLElG~G-tG-~~~~~la~~g~~~v~~tD~~~~ 56 (191)
+||=+||| .| -+...++..|.++++.+|.+.-
T Consensus 1 kVlVVGaGGlG~eilknLal~Gvg~I~IvD~D~V 34 (291)
T cd01488 1 KILVIGAGGLGCELLKNLALSGFRNIHVIDMDTI 34 (291)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEe
Confidence 47888998 56 3444778889889999997643
|
UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2. |
| >COG4301 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=82.80 E-value=22 Score=28.20 Aligned_cols=102 Identities=17% Similarity=0.050 Sum_probs=56.7
Q ss_pred CCCcEEEeCCCccHHH-HH---HHhcCC-CeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCC
Q 038343 22 SNKSCFEVGSGVGLVG-IC---LAHVKA-SKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESA 96 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~-~~---la~~g~-~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~ 96 (191)
.....+|||+|+..=. +. ++..|. .+++.+|++...|....+.+...-.. -.+.....|++..
T Consensus 78 g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~------------l~v~~l~~~~~~~ 145 (321)
T COG4301 78 GACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPG------------LEVNALCGDYELA 145 (321)
T ss_pred CcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCC------------CeEeehhhhHHHH
Confidence 4678999999977433 33 233332 48999999998887655544433221 1233333443322
Q ss_pred CcCCCCCCCCCEE-EEcccc--cCCCChHHHHHHHHHHhccCC
Q 038343 97 SESGLSAFVPEII-LGADIL--YDRSCFPDLVRILAILLNRRK 136 (191)
Q Consensus 97 ~~~~~~~~~fDvI-i~~d~l--y~~~~~~~ll~~l~~ll~~~g 136 (191)
.. .++..+--++ +....+ +.+..-..++..++..++||-
T Consensus 146 La-~~~~~~~Rl~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd 187 (321)
T COG4301 146 LA-ELPRGGRRLFVFLGSTLGNLTPGECAVFLTQLRGALRPGD 187 (321)
T ss_pred Hh-cccCCCeEEEEEecccccCCChHHHHHHHHHHHhcCCCcc
Confidence 21 1122222222 222233 245567778999999999983
|
|
| >COG3392 Adenine-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=82.38 E-value=3.3 Score=32.86 Aligned_cols=45 Identities=27% Similarity=0.293 Sum_probs=35.3
Q ss_pred HHHHHHHhhC-----CCCCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcC
Q 038343 8 LLLSEFILSF-----PEIFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDG 53 (191)
Q Consensus 8 ~~L~~~l~~~-----~~~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~ 53 (191)
..|-.|+... .+..+++.+.||-+|||++|..+-+.|. .|++-|+
T Consensus 8 ~~LlsFi~~~i~~~~k~~~s~k~f~DiFaGtGVV~~~fkk~~n-~iiaNDl 57 (330)
T COG3392 8 YKLLSFIKENIHEVKKEDLSGKIFCDIFAGTGVVGRFFKKAGN-KIIANDL 57 (330)
T ss_pred HHHHHHHHHHHHHHhhcccCCCeeeeeccCccHHHHHHHHhcc-hhhhchH
Confidence 4555666542 3455788999999999999999998876 7988887
|
|
| >KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=82.36 E-value=0.91 Score=37.83 Aligned_cols=110 Identities=13% Similarity=0.014 Sum_probs=55.8
Q ss_pred CCCCcEEEeCCCccHHHH-HHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcC
Q 038343 21 FSNKSCFEVGSGVGLVGI-CLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASES 99 (191)
Q Consensus 21 ~~~~~VLElG~GtG~~~~-~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~ 99 (191)
-++....|||+|.|-+-. .++..+++.=++.++....-+.+..|.+.+........ .....+.....++-+....
T Consensus 191 g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fG----k~~~~~~~i~gsf~~~~~v 266 (419)
T KOG3924|consen 191 GPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFG----KKPNKIETIHGSFLDPKRV 266 (419)
T ss_pred CCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhC----CCcCceeecccccCCHHHH
Confidence 356689999999995555 44444554555555433333333333322211100000 0113444455554433211
Q ss_pred CCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccC
Q 038343 100 GLSAFVPEIILGADILYDRSCFPDLVRILAILLNRR 135 (191)
Q Consensus 100 ~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~ 135 (191)
..-....++|+.+.+.++++..-.+- .+..=+++|
T Consensus 267 ~eI~~eatvi~vNN~~Fdp~L~lr~~-eil~~ck~g 301 (419)
T KOG3924|consen 267 TEIQTEATVIFVNNVAFDPELKLRSK-EILQKCKDG 301 (419)
T ss_pred HHHhhcceEEEEecccCCHHHHHhhH-HHHhhCCCc
Confidence 11223689999999998877554444 444444555
|
|
| >PRK05600 thiamine biosynthesis protein ThiF; Validated | Back alignment and domain information |
|---|
Probab=82.31 E-value=5.4 Score=33.22 Aligned_cols=36 Identities=28% Similarity=0.457 Sum_probs=28.7
Q ss_pred CCCCcEEEeCCC-cc-HHHHHHHhcCCCeEEEEcCChH
Q 038343 21 FSNKSCFEVGSG-VG-LVGICLAHVKASKVTLTDGDHL 56 (191)
Q Consensus 21 ~~~~~VLElG~G-tG-~~~~~la~~g~~~v~~tD~~~~ 56 (191)
+.+.+||=+||| .| .+...++..|..+++.+|.+.-
T Consensus 39 l~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D~v 76 (370)
T PRK05600 39 LHNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDDTV 76 (370)
T ss_pred hcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCEE
Confidence 467799999999 56 4555788889889999998743
|
|
| >PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=82.31 E-value=13 Score=31.77 Aligned_cols=49 Identities=20% Similarity=0.208 Sum_probs=31.2
Q ss_pred CCCCCcEEEeCCC-ccHH-HHHHHhcCCCeEEEEcCChH-HHHHHHHHHHHhc
Q 038343 20 IFSNKSCFEVGSG-VGLV-GICLAHVKASKVTLTDGDHL-TLANMRSNLELNQ 69 (191)
Q Consensus 20 ~~~~~~VLElG~G-tG~~-~~~la~~g~~~v~~tD~~~~-~l~~~~~n~~~n~ 69 (191)
.+.+++|+=+|+| +|.. +..+++.|. +|+++|..+. ......+.++..+
T Consensus 13 ~~~~~~v~viG~G~~G~~~A~~L~~~G~-~V~~~d~~~~~~~~~~~~~l~~~g 64 (480)
T PRK01438 13 DWQGLRVVVAGLGVSGFAAADALLELGA-RVTVVDDGDDERHRALAAILEALG 64 (480)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCchhhhHHHHHHHHHcC
Confidence 4567799999998 6643 336667777 8999996543 3333334444444
|
|
| >PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function | Back alignment and domain information |
|---|
Probab=82.16 E-value=5 Score=28.46 Aligned_cols=43 Identities=19% Similarity=0.381 Sum_probs=27.7
Q ss_pred EeCCCcc--HHHHHHH--hcC-CCeEEEEcCChHHHHHHHHH--HHHhcC
Q 038343 28 EVGSGVG--LVGICLA--HVK-ASKVTLTDGDHLTLANMRSN--LELNQL 70 (191)
Q Consensus 28 ElG~GtG--~~~~~la--~~g-~~~v~~tD~~~~~l~~~~~n--~~~n~~ 70 (191)
|+|+..| .....+. ..+ ..+|+++|.+|..++.+++| +..|..
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~~~~~l~~~ 50 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRNLNLALNDK 50 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH--HHHTTT
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHHHHHHhcCC
Confidence 7999999 4444332 333 34899999999999999999 777743
|
; PDB: 2PY6_A. |
| >PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases | Back alignment and domain information |
|---|
Probab=82.14 E-value=5.4 Score=27.95 Aligned_cols=46 Identities=17% Similarity=0.302 Sum_probs=33.8
Q ss_pred CCCCCcEEEeCCC-cc-HHHHHHHhcCCCeEEEEcCChHHHHHHHHHH
Q 038343 20 IFSNKSCFEVGSG-VG-LVGICLAHVKASKVTLTDGDHLTLANMRSNL 65 (191)
Q Consensus 20 ~~~~~~VLElG~G-tG-~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~ 65 (191)
.+++++||=+|+| .| .....+...|+++++.+..+.+-.+.+.+.+
T Consensus 9 ~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~ 56 (135)
T PF01488_consen 9 DLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEF 56 (135)
T ss_dssp TGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHH
T ss_pred CcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHc
Confidence 4678999999998 44 4444677789988999999876555554443
|
Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C .... |
| >PRK00258 aroE shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=82.10 E-value=11 Score=29.98 Aligned_cols=46 Identities=13% Similarity=0.190 Sum_probs=31.5
Q ss_pred CCCCCcEEEeCCC-cc-HHHHHHHhcCCCeEEEEcCChHHHHHHHHHH
Q 038343 20 IFSNKSCFEVGSG-VG-LVGICLAHVKASKVTLTDGDHLTLANMRSNL 65 (191)
Q Consensus 20 ~~~~~~VLElG~G-tG-~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~ 65 (191)
...+++||=+|+| .| .....++..|..+|+.++.+.+-.+.+.+.+
T Consensus 120 ~~~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~ 167 (278)
T PRK00258 120 DLKGKRILILGAGGAARAVILPLLDLGVAEITIVNRTVERAEELAKLF 167 (278)
T ss_pred CCCCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHh
Confidence 3567899999997 33 2233456678669999999877665555443
|
|
| >PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine | Back alignment and domain information |
|---|
Probab=81.78 E-value=3.1 Score=34.15 Aligned_cols=20 Identities=10% Similarity=0.096 Sum_probs=13.8
Q ss_pred CCCcEEEeCCCccHHHHHHH
Q 038343 22 SNKSCFEVGSGVGLVGICLA 41 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la 41 (191)
...+|+|+||.+|-.++.+.
T Consensus 16 ~~~~iaD~GcS~G~Nsl~~~ 35 (334)
T PF03492_consen 16 KPFRIADLGCSSGPNSLLAV 35 (334)
T ss_dssp TEEEEEEES--SSHHHHHHH
T ss_pred CceEEEecCCCCCccHHHHH
Confidence 34489999999998887544
|
Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B. |
| >TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family | Back alignment and domain information |
|---|
Probab=81.50 E-value=8.7 Score=30.32 Aligned_cols=102 Identities=18% Similarity=0.159 Sum_probs=56.2
Q ss_pred CcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCC----CCCc-
Q 038343 24 KSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWE----SASE- 98 (191)
Q Consensus 24 ~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~----~~~~- 98 (191)
..|+.||||-=.-..-+.......++=+|. |++++.=++.+...+.. ...+......|.. +...
T Consensus 83 ~qvV~LGaGlDTr~~Rl~~~~~~~~~EvD~-P~v~~~K~~~l~~~~~~----------~~~~~~~v~~Dl~~~w~~~L~~ 151 (260)
T TIGR00027 83 RQVVILGAGLDTRAYRLPWPDGTRVFEVDQ-PAVLAFKEKVLAELGAE----------PPAHRRAVPVDLRQDWPAALAA 151 (260)
T ss_pred cEEEEeCCccccHHHhcCCCCCCeEEECCC-hHHHHHHHHHHHHcCCC----------CCCceEEeccCchhhHHHHHHh
Confidence 369999999654443332221125666666 66766656666554322 1133444555543 2111
Q ss_pred CCCCCCCCCEEEEcccccCC--CChHHHHHHHHHHhccCC
Q 038343 99 SGLSAFVPEIILGADILYDR--SCFPDLVRILAILLNRRK 136 (191)
Q Consensus 99 ~~~~~~~fDvIi~~d~ly~~--~~~~~ll~~l~~ll~~~g 136 (191)
..+.....-++++-.++++. +....+++.+..+..|++
T Consensus 152 ~gfd~~~ptl~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs 191 (260)
T TIGR00027 152 AGFDPTAPTAWLWEGLLMYLTEEAVDALLAFIAELSAPGS 191 (260)
T ss_pred CCCCCCCCeeeeecchhhcCCHHHHHHHHHHHHHhCCCCc
Confidence 11223345677877777654 456778888887776664
|
This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants. |
| >cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1 | Back alignment and domain information |
|---|
Probab=81.32 E-value=2.6 Score=31.73 Aligned_cols=35 Identities=14% Similarity=0.209 Sum_probs=26.9
Q ss_pred CCCCcEEEeCCC-cc-HHHHHHHhcCCCeEEEEcCCh
Q 038343 21 FSNKSCFEVGSG-VG-LVGICLAHVKASKVTLTDGDH 55 (191)
Q Consensus 21 ~~~~~VLElG~G-tG-~~~~~la~~g~~~v~~tD~~~ 55 (191)
..+.+||=+||| .| .+...++..|.++++.+|.+.
T Consensus 19 L~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~ 55 (197)
T cd01492 19 LRSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRT 55 (197)
T ss_pred HHhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCc
Confidence 456789999998 44 444577888999999999763
|
Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain. |
| >PRK08267 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=81.16 E-value=17 Score=27.97 Aligned_cols=73 Identities=16% Similarity=0.155 Sum_probs=42.6
Q ss_pred CcEEEeCCCccH---HHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCC
Q 038343 24 KSCFEVGSGVGL---VGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESG 100 (191)
Q Consensus 24 ~~VLElG~GtG~---~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~ 100 (191)
+++|=.|++.|+ +...+++.|+ +|++++.++..++.+...+. + .++.+...|..+.....
T Consensus 2 k~vlItGasg~iG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~--~--------------~~~~~~~~D~~~~~~v~ 64 (260)
T PRK08267 2 KSIFITGAASGIGRATALLFAAEGW-RVGAYDINEAGLAALAAELG--A--------------GNAWTGALDVTDRAAWD 64 (260)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHhc--C--------------CceEEEEecCCCHHHHH
Confidence 357777766542 2334555676 89999988876666544332 1 23566677765543110
Q ss_pred -----C-C--CCCCCEEEEcc
Q 038343 101 -----L-S--AFVPEIILGAD 113 (191)
Q Consensus 101 -----~-~--~~~fDvIi~~d 113 (191)
. . .+++|+|+.+-
T Consensus 65 ~~~~~~~~~~~~~id~vi~~a 85 (260)
T PRK08267 65 AALADFAAATGGRLDVLFNNA 85 (260)
T ss_pred HHHHHHHHHcCCCCCEEEECC
Confidence 0 0 35689888643
|
|
| >PRK06153 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=81.09 E-value=2.2 Score=35.68 Aligned_cols=36 Identities=22% Similarity=0.374 Sum_probs=29.8
Q ss_pred CCCCcEEEeCCC-cc-HHHHHHHhcCCCeEEEEcCChH
Q 038343 21 FSNKSCFEVGSG-VG-LVGICLAHVKASKVTLTDGDHL 56 (191)
Q Consensus 21 ~~~~~VLElG~G-tG-~~~~~la~~g~~~v~~tD~~~~ 56 (191)
+++.+|+=+||| +| .+...+++.|..+++++|.+.-
T Consensus 174 L~~~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D~V 211 (393)
T PRK06153 174 LEGQRIAIIGLGGTGSYILDLVAKTPVREIHLFDGDDF 211 (393)
T ss_pred HhhCcEEEEcCCccHHHHHHHHHHcCCCEEEEECCCEe
Confidence 466799999999 77 5666899999999999998743
|
|
| >PRK05650 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=80.84 E-value=24 Score=27.35 Aligned_cols=75 Identities=12% Similarity=-0.028 Sum_probs=42.2
Q ss_pred cEEEeCCCccH---HHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCC-
Q 038343 25 SCFEVGSGVGL---VGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESG- 100 (191)
Q Consensus 25 ~VLElG~GtG~---~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~- 100 (191)
+||=.|+..|+ +...+++.|. +|++++.+..-++.+...+...+ .++.+...|+.+.....
T Consensus 2 ~vlVtGasggIG~~la~~l~~~g~-~V~~~~r~~~~~~~~~~~l~~~~--------------~~~~~~~~D~~~~~~~~~ 66 (270)
T PRK05650 2 RVMITGAASGLGRAIALRWAREGW-RLALADVNEEGGEETLKLLREAG--------------GDGFYQRCDVRDYSQLTA 66 (270)
T ss_pred EEEEecCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC--------------CceEEEEccCCCHHHHHH
Confidence 56766765443 2334455676 89999988766665554444332 23556667765432110
Q ss_pred -C-----CCCCCCEEEEccc
Q 038343 101 -L-----SAFVPEIILGADI 114 (191)
Q Consensus 101 -~-----~~~~fDvIi~~d~ 114 (191)
. ..+++|++|.+--
T Consensus 67 ~~~~i~~~~~~id~lI~~ag 86 (270)
T PRK05650 67 LAQACEEKWGGIDVIVNNAG 86 (270)
T ss_pred HHHHHHHHcCCCCEEEECCC
Confidence 0 1146898887543
|
|
| >PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases | Back alignment and domain information |
|---|
Probab=80.49 E-value=5.6 Score=28.24 Aligned_cols=80 Identities=13% Similarity=0.134 Sum_probs=48.2
Q ss_pred cEEEeCCCccH---HHHHHHhcCCCeEEEEcCC--hHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcC
Q 038343 25 SCFEVGSGVGL---VGICLAHVKASKVTLTDGD--HLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASES 99 (191)
Q Consensus 25 ~VLElG~GtG~---~~~~la~~g~~~v~~tD~~--~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~ 99 (191)
++|=.|+++|+ ++..+++.|...|+++..+ ....+.+...++..+ .++.+...|..+...-
T Consensus 2 ~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~--------------~~~~~~~~D~~~~~~~ 67 (167)
T PF00106_consen 2 TVLITGASSGIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAPG--------------AKITFIECDLSDPESI 67 (167)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTT--------------SEEEEEESETTSHHHH
T ss_pred EEEEECCCCHHHHHHHHHHHhcCceEEEEeeecccccccccccccccccc--------------cccccccccccccccc
Confidence 56667777662 3445555677789999987 555555555555433 3577777776544211
Q ss_pred C-------CCCCCCCEEEEcccccCC
Q 038343 100 G-------LSAFVPEIILGADILYDR 118 (191)
Q Consensus 100 ~-------~~~~~fDvIi~~d~ly~~ 118 (191)
. ...++.|++|.+--+...
T Consensus 68 ~~~~~~~~~~~~~ld~li~~ag~~~~ 93 (167)
T PF00106_consen 68 RALIEEVIKRFGPLDILINNAGIFSD 93 (167)
T ss_dssp HHHHHHHHHHHSSESEEEEECSCTTS
T ss_pred cccccccccccccccccccccccccc
Confidence 0 123579999976555543
|
As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A .... |
| >COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=80.40 E-value=3.3 Score=34.69 Aligned_cols=37 Identities=30% Similarity=0.513 Sum_probs=28.3
Q ss_pred cEEEeCCC-cc-HHHHHHHhcCCCeEEEEcCChHHHHHHH
Q 038343 25 SCFEVGSG-VG-LVGICLAHVKASKVTLTDGDHLTLANMR 62 (191)
Q Consensus 25 ~VLElG~G-tG-~~~~~la~~g~~~v~~tD~~~~~l~~~~ 62 (191)
+|--+|+| .| ..+..++..|. .|+++|+++.=++.++
T Consensus 2 kI~viGtGYVGLv~g~~lA~~GH-eVv~vDid~~KV~~ln 40 (414)
T COG1004 2 KITVIGTGYVGLVTGACLAELGH-EVVCVDIDESKVELLN 40 (414)
T ss_pred ceEEECCchHHHHHHHHHHHcCC-eEEEEeCCHHHHHHHh
Confidence 46667777 67 45667888886 9999999988776664
|
|
| >cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like | Back alignment and domain information |
|---|
Probab=80.37 E-value=2.3 Score=32.10 Aligned_cols=35 Identities=17% Similarity=0.334 Sum_probs=26.9
Q ss_pred CCCCcEEEeCCC-cc-HHHHHHHhcCCCeEEEEcCCh
Q 038343 21 FSNKSCFEVGSG-VG-LVGICLAHVKASKVTLTDGDH 55 (191)
Q Consensus 21 ~~~~~VLElG~G-tG-~~~~~la~~g~~~v~~tD~~~ 55 (191)
..+.+|+=+||| .| .+...++..|.++++.+|.+.
T Consensus 17 L~~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d~ 53 (198)
T cd01485 17 LRSAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHRL 53 (198)
T ss_pred HhhCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECCc
Confidence 356689999999 45 444477888998999999763
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol |
| >PRK05867 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=80.31 E-value=15 Score=28.23 Aligned_cols=80 Identities=13% Similarity=0.130 Sum_probs=48.3
Q ss_pred CCCCcEEEeCCCccH---HHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCC
Q 038343 21 FSNKSCFEVGSGVGL---VGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESAS 97 (191)
Q Consensus 21 ~~~~~VLElG~GtG~---~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~ 97 (191)
+.++++|=.|++.|+ +...+++.|+ +|++++.+++.++.+...+...+ .++.....|..+..
T Consensus 7 ~~~k~vlVtGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~--------------~~~~~~~~D~~~~~ 71 (253)
T PRK05867 7 LHGKRALITGASTGIGKRVALAYVEAGA-QVAIAARHLDALEKLADEIGTSG--------------GKVVPVCCDVSQHQ 71 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcC--------------CeEEEEEccCCCHH
Confidence 467889999987663 3335566777 89999998877766655554332 23455666665432
Q ss_pred cCC-----C--CCCCCCEEEEcccc
Q 038343 98 ESG-----L--SAFVPEIILGADIL 115 (191)
Q Consensus 98 ~~~-----~--~~~~fDvIi~~d~l 115 (191)
... . .-++.|+++.+--+
T Consensus 72 ~~~~~~~~~~~~~g~id~lv~~ag~ 96 (253)
T PRK05867 72 QVTSMLDQVTAELGGIDIAVCNAGI 96 (253)
T ss_pred HHHHHHHHHHHHhCCCCEEEECCCC
Confidence 110 0 11468888865433
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} Length = 281 | Back alignment and structure |
|---|
Score = 105 bits (262), Expect = 5e-28
Identities = 32/143 (22%), Positives = 62/143 (43%), Gaps = 1/143 (0%)
Query: 1 CSIWPSSLLLSEFILSFPEIFSNKSCFEVGSGVGLVGICLAHVKASKVTLTD-GDHLTLA 59
+W + L++ + PE+ + K+ E+G+G GLV I A +V TD D L
Sbjct: 58 SHVWSGARALADTLCWQPELIAGKTVCELGAGAGLVSIVAFLAGADQVVATDYPDPEILN 117
Query: 60 NMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESGLSAFVPEIILGADILYDRS 119
++ SN+ + ++ +S P VV + + +++L AD+L
Sbjct: 118 SLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDSLQRCTGLQRFQVVLLADLLSFHQ 177
Query: 120 CFPDLVRILAILLNRRKSVSSSR 142
L+R + +LL + ++
Sbjct: 178 AHDALLRSVKMLLALPANDPTAV 200
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 Length = 200 | Back alignment and structure |
|---|
Score = 41.2 bits (96), Expect = 7e-05
Identities = 15/97 (15%), Positives = 33/97 (34%), Gaps = 2/97 (2%)
Query: 20 IFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLES 79
+S + G+G G++ + A VT D D + + N + +
Sbjct: 49 NIGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCGGVNFM--VADVSE 106
Query: 80 YEDPNVVQCVHLPWESASESGLSAFVPEIILGADILY 116
++ P+ S + AF+ + + +Y
Sbjct: 107 ISGKYDTWIMNPPFGSVVKHSDRAFIDKAFETSMWIY 143
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} Length = 260 | Back alignment and structure |
|---|
Score = 40.6 bits (95), Expect = 1e-04
Identities = 15/66 (22%), Positives = 30/66 (45%), Gaps = 5/66 (7%)
Query: 7 SLLLSEFILSFPEIFSNKSCFEVGSGVGLVGICLAH-VKASKVTLTDGDHLTLANMRSNL 65
++LL+ S ++G+G G G+ +A ++ ++VTL + R +L
Sbjct: 25 AMLLA----SLVADDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSL 80
Query: 66 ELNQLS 71
EL +
Sbjct: 81 ELPDNA 86
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* Length = 381 | Back alignment and structure |
|---|
Score = 38.8 bits (90), Expect = 5e-04
Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Query: 6 SSLLLSEF-ILSFPEIFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSN 64
S LLL PE + ++G+G G + + LA + A +V + D ++ +++
Sbjct: 216 SLLLLEALQERLGPEGVRGRQVLDLGAGYGALTLPLARMGA-EVVGVEDDLASVLSLQKG 274
Query: 65 LELNQL 70
LE N L
Sbjct: 275 LEANAL 280
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 191 | |||
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 99.84 | |
| 4hc4_A | 376 | Protein arginine N-methyltransferase 6; HRMT1L6, S | 99.67 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 99.63 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 99.62 | |
| 3p9n_A | 189 | Possible methyltransferase (methylase); RV2966C, a | 99.62 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 99.62 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 99.62 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 99.62 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 99.61 | |
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 99.6 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 99.59 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 99.59 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 99.59 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 99.59 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 99.58 | |
| 3jwg_A | 219 | HEN1, methyltransferase type 12; 1.90A {Clostridiu | 99.57 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 99.57 | |
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 99.57 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 99.57 | |
| 4htf_A | 285 | S-adenosylmethionine-dependent methyltransferase; | 99.57 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 99.56 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 99.56 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 99.56 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 99.55 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 99.55 | |
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 99.55 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 99.55 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 99.55 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 99.55 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 99.54 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 99.54 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 99.54 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 99.54 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 99.53 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 99.53 | |
| 4hg2_A | 257 | Methyltransferase type 11; structural genomics, PS | 99.53 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 99.52 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 99.52 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 99.52 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 99.52 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 99.52 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 99.51 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 99.51 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 99.51 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 99.51 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 99.5 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 99.5 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 99.5 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 99.5 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 99.5 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 99.5 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 99.5 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 99.5 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 99.49 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 99.49 | |
| 2ift_A | 201 | Putative methylase HI0767; NESG, Y767_haein, struc | 99.49 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 99.49 | |
| 2fpo_A | 202 | Methylase YHHF; structural genomics, putative meth | 99.49 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 99.48 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 99.48 | |
| 3iv6_A | 261 | Putative Zn-dependent alcohol dehydrogenase; alpha | 99.48 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 99.47 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 99.47 | |
| 2b3t_A | 276 | Protein methyltransferase HEMK; translation termin | 99.46 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 99.46 | |
| 3fzg_A | 200 | 16S rRNA methylase; methyltransferase, plasmid, tr | 99.46 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 99.46 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 99.46 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 99.46 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 99.46 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 99.46 | |
| 3bkx_A | 275 | SAM-dependent methyltransferase; YP_807781.1, cycl | 99.45 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 99.45 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 99.45 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 99.45 | |
| 2a14_A | 263 | Indolethylamine N-methyltransferase; SGC,INMT, str | 99.45 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 99.45 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 99.45 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 99.45 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 99.45 | |
| 1zx0_A | 236 | Guanidinoacetate N-methyltransferase; structural g | 99.45 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 99.44 | |
| 2frn_A | 278 | Hypothetical protein PH0793; structural genomics, | 99.44 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 99.44 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 99.44 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 99.44 | |
| 3g89_A | 249 | Ribosomal RNA small subunit methyltransferase G; 1 | 99.44 | |
| 2i62_A | 265 | Nicotinamide N-methyltransferase; structural genom | 99.43 | |
| 1yzh_A | 214 | TRNA (guanine-N(7)-)-methyltransferase; alpha-beta | 99.43 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 99.43 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 99.42 | |
| 2vdw_A | 302 | Vaccinia virus capping enzyme D1 subunit; nucleoti | 99.42 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 99.42 | |
| 3lec_A | 230 | NADB-rossmann superfamily protein; PSI, MCSG, stru | 99.42 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 99.42 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 99.42 | |
| 1ws6_A | 171 | Methyltransferase; structural genomics, riken stru | 99.42 | |
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.42 | |
| 1xdz_A | 240 | Methyltransferase GIDB; MCSG, protein structure in | 99.41 | |
| 3dxy_A | 218 | TRNA (guanine-N(7)-)-methyltransferase; rossmann f | 99.41 | |
| 3kr9_A | 225 | SAM-dependent methyltransferase; class I rossmann- | 99.41 | |
| 2h00_A | 254 | Methyltransferase 10 domain containing protein; st | 99.41 | |
| 3bgv_A | 313 | MRNA CAP guanine-N7 methyltransferase; alternative | 99.41 | |
| 4dzr_A | 215 | Protein-(glutamine-N5) methyltransferase, release | 99.4 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 99.4 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 99.4 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 99.4 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 99.39 | |
| 3gnl_A | 244 | Uncharacterized protein, DUF633, LMOF2365_1472; st | 99.39 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 99.39 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 99.39 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 99.39 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 99.39 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 99.38 | |
| 3k6r_A | 278 | Putative transferase PH0793; structural genomics, | 99.38 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 99.38 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 99.38 | |
| 1jsx_A | 207 | Glucose-inhibited division protein B; methyltransf | 99.38 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 99.38 | |
| 2aot_A | 292 | HMT, histamine N-methyltransferase; classic methyl | 99.37 | |
| 3u81_A | 221 | Catechol O-methyltransferase; neurotransmitter deg | 99.37 | |
| 1uwv_A | 433 | 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m | 99.35 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 99.35 | |
| 3ntv_A | 232 | MW1564 protein; rossmann fold, putative methyltran | 99.35 | |
| 2fca_A | 213 | TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac | 99.35 | |
| 2igt_A | 332 | SAM dependent methyltransferase; alpha-beta sandwi | 99.35 | |
| 1nt2_A | 210 | Fibrillarin-like PRE-rRNA processing protein; adeM | 99.35 | |
| 3q87_B | 170 | N6 adenine specific DNA methylase; SAM-methyltrans | 99.35 | |
| 4azs_A | 569 | Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15 | 99.34 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 99.34 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 99.34 | |
| 2g72_A | 289 | Phenylethanolamine N-methyltransferase; HET: SAM F | 99.34 | |
| 1wy7_A | 207 | Hypothetical protein PH1948; seven-stranded beta s | 99.34 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 99.34 | |
| 1o9g_A | 250 | RRNA methyltransferase; antibiotic resistance, Se- | 99.34 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 99.33 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 99.33 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 99.33 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 99.33 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 99.32 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 99.32 | |
| 3tma_A | 354 | Methyltransferase; thump domain; 2.05A {Thermus th | 99.32 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 99.32 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 99.32 | |
| 3i53_A | 332 | O-methyltransferase; CO-complex, rossmann-like fol | 99.31 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 99.31 | |
| 3a27_A | 272 | TYW2, uncharacterized protein MJ1557; wybutosine m | 99.31 | |
| 2jjq_A | 425 | Uncharacterized RNA methyltransferase pyrab10780; | 99.31 | |
| 3htx_A | 950 | HEN1; HEN1, small RNA methyltransferase, protein-R | 99.31 | |
| 3hp7_A | 291 | Hemolysin, putative; structural genomics, APC64019 | 99.31 | |
| 2ipx_A | 233 | RRNA 2'-O-methyltransferase fibrillarin; FBL, stru | 99.31 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 99.3 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 99.3 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 99.3 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 99.3 | |
| 3gwz_A | 369 | MMCR; methyltransferase, mitomycin, S-adenosyl met | 99.29 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 99.29 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 99.29 | |
| 2b78_A | 385 | Hypothetical protein SMU.776; structure genomics, | 99.29 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 99.29 | |
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 99.28 | |
| 1g8a_A | 227 | Fibrillarin-like PRE-rRNA processing protein; rRNA | 99.28 | |
| 1qzz_A | 374 | RDMB, aclacinomycin-10-hydroxylase; anthracycline, | 99.28 | |
| 2qm3_A | 373 | Predicted methyltransferase; putative methyltransf | 99.27 | |
| 3ajd_A | 274 | Putative methyltransferase MJ0026; tRNA, M5C, ross | 99.27 | |
| 1u2z_A | 433 | Histone-lysine N-methyltransferase, H3 lysine-79 s | 99.27 | |
| 2vdv_E | 246 | TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl | 99.26 | |
| 1x19_A | 359 | CRTF-related protein; methyltransferase, bacterioc | 99.26 | |
| 4e2x_A | 416 | TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s | 99.26 | |
| 3id6_C | 232 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.25 | |
| 2r3s_A | 335 | Uncharacterized protein; methyltransferase domain, | 99.25 | |
| 4dmg_A | 393 | Putative uncharacterized protein TTHA1493; rRNA, m | 99.25 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 99.24 | |
| 3opn_A | 232 | Putative hemolysin; structural genomics, PSI-2, pr | 99.24 | |
| 3c0k_A | 396 | UPF0064 protein YCCW; PUA domain, adoMet dependent | 99.24 | |
| 1ixk_A | 315 | Methyltransferase; open beta sheet; 1.90A {Pyrococ | 99.24 | |
| 3dp7_A | 363 | SAM-dependent methyltransferase; structural genomi | 99.24 | |
| 1jg1_A | 235 | PIMT;, protein-L-isoaspartate O-methyltransferase; | 99.24 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 99.24 | |
| 3c3p_A | 210 | Methyltransferase; NP_951602.1, structural genomic | 99.24 | |
| 3uwp_A | 438 | Histone-lysine N-methyltransferase, H3 lysine-79; | 99.24 | |
| 2ip2_A | 334 | Probable phenazine-specific methyltransferase; pyo | 99.24 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 99.23 | |
| 1tw3_A | 360 | COMT, carminomycin 4-O-methyltransferase; anthracy | 99.23 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 99.23 | |
| 3tm4_A | 373 | TRNA (guanine N2-)-methyltransferase TRM14; rossma | 99.22 | |
| 1i9g_A | 280 | Hypothetical protein RV2118C; mtase, adoMet, cryst | 99.22 | |
| 1ne2_A | 200 | Hypothetical protein TA1320; structural genomics, | 99.21 | |
| 2yx1_A | 336 | Hypothetical protein MJ0883; methyl transferase, t | 99.21 | |
| 2as0_A | 396 | Hypothetical protein PH1915; RNA methyltransferase | 99.21 | |
| 2qe6_A | 274 | Uncharacterized protein TFU_2867; putative methylt | 99.21 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 99.21 | |
| 3mcz_A | 352 | O-methyltransferase; adomet_mtases, S-adenosylmeth | 99.21 | |
| 3c3y_A | 237 | Pfomt, O-methyltransferase; plant secondary metabo | 99.2 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 99.2 | |
| 3r3h_A | 242 | O-methyltransferase, SAM-dependent; structural gen | 99.19 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 99.18 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 99.18 | |
| 2b25_A | 336 | Hypothetical protein; structural genomics, methyl | 99.18 | |
| 2yxl_A | 450 | PH0851 protein, 450AA long hypothetical FMU protei | 99.17 | |
| 3ckk_A | 235 | TRNA (guanine-N(7)-)-methyltransferase; mettl1, S- | 99.17 | |
| 3bt7_A | 369 | TRNA (uracil-5-)-methyltransferase; methyluridine, | 99.17 | |
| 1af7_A | 274 | Chemotaxis receptor methyltransferase CHER; chemot | 99.16 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 99.16 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 99.14 | |
| 1r18_A | 227 | Protein-L-isoaspartate(D-aspartate)-O-methyltrans; | 99.14 | |
| 1zq9_A | 285 | Probable dimethyladenosine transferase; SGC, struc | 99.14 | |
| 3mq2_A | 218 | 16S rRNA methyltransferase; methyltranferase, ribo | 99.13 | |
| 1wxx_A | 382 | TT1595, hypothetical protein TTHA1280; thermus the | 99.12 | |
| 2frx_A | 479 | Hypothetical protein YEBU; rossmann-type S-adenosy | 99.11 | |
| 3axs_A | 392 | Probable N(2),N(2)-dimethylguanosine tRNA methylt | 99.1 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 99.1 | |
| 2i7c_A | 283 | Spermidine synthase; transferase, structural genom | 99.09 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 99.09 | |
| 2dul_A | 378 | N(2),N(2)-dimethylguanosine tRNA methyltransferas; | 99.09 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 99.09 | |
| 3frh_A | 253 | 16S rRNA methylase; methyltransferase domain, heli | 99.08 | |
| 2h1r_A | 299 | Dimethyladenosine transferase, putative; SGC toron | 99.08 | |
| 3m6w_A | 464 | RRNA methylase; rRNA methyltransferase, 5-methylcy | 99.08 | |
| 2pt6_A | 321 | Spermidine synthase; transferase, structural genom | 99.07 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 99.06 | |
| 3lcv_B | 281 | Sisomicin-gentamicin resistance methylase SGM; ant | 99.06 | |
| 3lst_A | 348 | CALO1 methyltransferase; calicheamicin, enediyne, | 99.06 | |
| 3ldu_A | 385 | Putative methylase; structural genomics, PSI-2, pr | 99.06 | |
| 1sqg_A | 429 | SUN protein, FMU protein; rossmann-fold, mixed bet | 99.06 | |
| 3m4x_A | 456 | NOL1/NOP2/SUN family protein; mtase domain, PUA do | 99.06 | |
| 1xj5_A | 334 | Spermidine synthase 1; structural genomics, protei | 99.05 | |
| 2plw_A | 201 | Ribosomal RNA methyltransferase, putative; malaria | 99.04 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 99.03 | |
| 3p2e_A | 225 | 16S rRNA methylase; methyltransferase, transferase | 99.03 | |
| 2o07_A | 304 | Spermidine synthase; structural genomics, structur | 99.03 | |
| 3ll7_A | 410 | Putative methyltransferase; methytransferase, stru | 99.02 | |
| 2nyu_A | 196 | Putative ribosomal RNA methyltransferase 2; SAM, s | 99.02 | |
| 2wa2_A | 276 | Non-structural protein 5; transferase, S-adenosyl- | 99.02 | |
| 2bm8_A | 236 | Cephalosporin hydroxylase CMCI; cephamycin biosynt | 99.01 | |
| 3dou_A | 191 | Ribosomal RNA large subunit methyltransferase J; c | 99.01 | |
| 3k0b_A | 393 | Predicted N6-adenine-specific DNA methylase; methy | 99.0 | |
| 4a6d_A | 353 | Hydroxyindole O-methyltransferase; melatonin, circ | 99.0 | |
| 3gjy_A | 317 | Spermidine synthase; APC62791, structural genomics | 98.99 | |
| 2r6z_A | 258 | UPF0341 protein in RSP 3' region; alpha-beta prote | 98.99 | |
| 2b2c_A | 314 | Spermidine synthase; beta-alpha, transferase; 2.50 | 98.99 | |
| 2oxt_A | 265 | Nucleoside-2'-O-methyltransferase; flavivirus, vir | 98.99 | |
| 3gru_A | 295 | Dimethyladenosine transferase; rossman fold, ribos | 98.99 | |
| 3ldg_A | 384 | Putative uncharacterized protein SMU.472; YPSC, me | 98.98 | |
| 1uir_A | 314 | Polyamine aminopropyltransferase; spermidien synth | 98.98 | |
| 1fp2_A | 352 | Isoflavone O-methyltransferase; protein-product co | 98.93 | |
| 2b9e_A | 309 | NOL1/NOP2/SUN domain family, member 5 isoform 2; m | 98.93 | |
| 1fp1_D | 372 | Isoliquiritigenin 2'-O-methyltransferase; protein- | 98.93 | |
| 2cmg_A | 262 | Spermidine synthase; transferase, putrescine amino | 98.91 | |
| 2f8l_A | 344 | Hypothetical protein LMO1582; structural genomics, | 98.9 | |
| 3tqs_A | 255 | Ribosomal RNA small subunit methyltransferase A; p | 98.89 | |
| 3reo_A | 368 | (ISO)eugenol O-methyltransferase; directed evoluti | 98.86 | |
| 3p9c_A | 364 | Caffeic acid O-methyltransferase; S-adenosylmethio | 98.82 | |
| 1qam_A | 244 | ERMC' methyltransferase; rRNA methyltransferase ER | 98.81 | |
| 1zg3_A | 358 | Isoflavanone 4'-O-methyltransferase; rossman fold, | 98.8 | |
| 4gqb_A | 637 | Protein arginine N-methyltransferase 5; TIM barrel | 98.79 | |
| 2okc_A | 445 | Type I restriction enzyme stysji M protein; NP_813 | 98.78 | |
| 2p41_A | 305 | Type II methyltransferase; vizier, viral enzymes i | 98.78 | |
| 3fut_A | 271 | Dimethyladenosine transferase; methyltransferase, | 98.77 | |
| 3ftd_A | 249 | Dimethyladenosine transferase; KSGA, rossmann-like | 98.77 | |
| 2oyr_A | 258 | UPF0341 protein YHIQ; alpha-beta protein, structur | 98.76 | |
| 2ld4_A | 176 | Anamorsin; methyltransferase-like fold, alpha/beta | 98.75 | |
| 2ih2_A | 421 | Modification methylase TAQI; DNA, DNA methyltransf | 98.73 | |
| 3giw_A | 277 | Protein of unknown function DUF574; rossmann-fold | 98.71 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 98.68 | |
| 1yub_A | 245 | Ermam, rRNA methyltransferase; MLS antibiotics; NM | 98.68 | |
| 2qfm_A | 364 | Spermine synthase; spermidine aminopropyltransfera | 98.63 | |
| 3sso_A | 419 | Methyltransferase; macrolide, natural product, ros | 98.62 | |
| 1m6y_A | 301 | S-adenosyl-methyltransferase MRAW; SAM-dependent m | 98.6 | |
| 3uzu_A | 279 | Ribosomal RNA small subunit methyltransferase A; s | 98.56 | |
| 1qyr_A | 252 | KSGA, high level kasugamycin resistance protein, S | 98.51 | |
| 3cvo_A | 202 | Methyltransferase-like protein of unknown functio; | 98.48 | |
| 3ua3_A | 745 | Protein arginine N-methyltransferase 5; TIM-barrel | 98.47 | |
| 2xyq_A | 290 | Putative 2'-O-methyl transferase; transferase-vira | 98.37 | |
| 2ar0_A | 541 | M.ecoki, type I restriction enzyme ecoki M protein | 98.36 | |
| 3lkd_A | 542 | Type I restriction-modification system methyltrans | 98.34 | |
| 2oo3_A | 283 | Protein involved in catabolism of external DNA; st | 98.28 | |
| 3s1s_A | 878 | Restriction endonuclease bpusi; PD--(D/E)XK cataly | 98.23 | |
| 3evf_A | 277 | RNA-directed RNA polymerase NS5; NS5 methyltransfe | 98.2 | |
| 2k4m_A | 153 | TR8_protein, UPF0146 protein MTH_1000; alpha+beta, | 98.16 | |
| 3khk_A | 544 | Type I restriction-modification system methylation | 98.14 | |
| 3o4f_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 98.12 | |
| 3gcz_A | 282 | Polyprotein; flavivirus, RNA capping, methyltransf | 98.09 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 98.05 | |
| 4fzv_A | 359 | Putative methyltransferase NSUN4; mterf fold, meth | 97.99 | |
| 3eld_A | 300 | Methyltransferase; flavivirus, RNA capping, guanyl | 97.85 | |
| 3lkz_A | 321 | Non-structural protein 5; flavivirus, methyltransf | 97.82 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 97.75 | |
| 2qy6_A | 257 | UPF0209 protein YFCK; structural genomics, unknown | 97.64 | |
| 4auk_A | 375 | Ribosomal RNA large subunit methyltransferase M; Y | 97.6 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 97.55 | |
| 3c6k_A | 381 | Spermine synthase; spermidine aminopropyltransfera | 97.48 | |
| 3b5i_A | 374 | S-adenosyl-L-methionine:salicylic acid carboxyl me | 97.48 | |
| 2wk1_A | 282 | NOVP; transferase, O-methyltransferase, novobiocin | 97.28 | |
| 3g7u_A | 376 | Cytosine-specific methyltransferase; DNA-binding, | 97.1 | |
| 2efj_A | 384 | 3,7-dimethylxanthine methyltransferase; SAM-depend | 97.08 | |
| 1g55_A | 343 | DNA cytosine methyltransferase DNMT2; human DNA me | 97.04 | |
| 3ufb_A | 530 | Type I restriction-modification system methyltran | 96.94 | |
| 1m6e_X | 359 | S-adenosyl-L-methionnine:salicylic acid carboxyl m | 96.9 | |
| 1wg8_A | 285 | Predicted S-adenosylmethionine-dependent methyltra | 96.79 | |
| 1i4w_A | 353 | Mitochondrial replication protein MTF1; mitochondr | 96.7 | |
| 2c7p_A | 327 | Modification methylase HHAI; DNA methyltransferase | 96.67 | |
| 3p8z_A | 267 | Mtase, non-structural protein 5; methyltransferase | 96.64 | |
| 4h0n_A | 333 | DNMT2; SAH binding, transferase; HET: SAH; 2.71A { | 96.15 | |
| 3qv2_A | 327 | 5-cytosine DNA methyltransferase; DNMT2, ehmeth; H | 96.15 | |
| 3ubt_Y | 331 | Modification methylase HAEIII; protein-DNA complex | 96.15 | |
| 2py6_A | 409 | Methyltransferase FKBM; YP_546752.1, structural ge | 96.11 | |
| 2qrv_A | 295 | DNA (cytosine-5)-methyltransferase 3A; DNA methylt | 95.98 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 95.23 | |
| 1eg2_A | 319 | Modification methylase RSRI; rossmann fold, exocyc | 95.11 | |
| 2px2_A | 269 | Genome polyprotein [contains: capsid protein C (co | 93.95 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 93.0 | |
| 4hp8_A | 247 | 2-deoxy-D-gluconate 3-dehydrogenase; enzyme functi | 92.45 | |
| 3tka_A | 347 | Ribosomal RNA small subunit methyltransferase H; H | 92.31 | |
| 3me5_A | 482 | Cytosine-specific methyltransferase; structural ge | 92.28 | |
| 1zkd_A | 387 | DUF185; NESG, RPR58, structural genomics, PSI, pro | 92.14 | |
| 4g81_D | 255 | Putative hexonate dehydrogenase; enzyme function i | 91.36 | |
| 4fn4_A | 254 | Short chain dehydrogenase; NADH-binding, rossmann | 91.3 | |
| 2dph_A | 398 | Formaldehyde dismutase; dismutation of aldehydes, | 91.13 | |
| 1f8f_A | 371 | Benzyl alcohol dehydrogenase; rossmann fold, oxido | 90.84 | |
| 4dkj_A | 403 | Cytosine-specific methyltransferase; CG-specificit | 89.88 | |
| 3jyo_A | 283 | Quinate/shikimate dehydrogenase; enzyme-cofactor c | 89.78 | |
| 1kol_A | 398 | Formaldehyde dehydrogenase; oxidoreductase; HET: N | 89.6 | |
| 4f3n_A | 432 | Uncharacterized ACR, COG1565 superfamily; structur | 89.56 | |
| 3s2e_A | 340 | Zinc-containing alcohol dehydrogenase superfamily; | 89.46 | |
| 3tnl_A | 315 | Shikimate dehydrogenase; structural genomics, cent | 89.4 | |
| 3fpc_A | 352 | NADP-dependent alcohol dehydrogenase; oxydoreducta | 89.36 | |
| 1jw9_B | 249 | Molybdopterin biosynthesis MOEB protein; MOEB: mod | 89.11 | |
| 3h8v_A | 292 | Ubiquitin-like modifier-activating enzyme 5; rossm | 89.04 | |
| 3uko_A | 378 | Alcohol dehydrogenase class-3; alcohol dehydrogena | 87.99 | |
| 1pl8_A | 356 | Human sorbitol dehydrogenase; NAD, oxidoreductase; | 87.92 | |
| 3o8q_A | 281 | Shikimate 5-dehydrogenase I alpha; structural geno | 86.35 | |
| 3h5n_A | 353 | MCCB protein; ubiquitin-activating enzyme, microci | 86.29 | |
| 3ucx_A | 264 | Short chain dehydrogenase; ssgcid, seattle structu | 86.27 | |
| 4ft4_B | 784 | DNA (cytosine-5)-methyltransferase 1; chromodomain | 86.15 | |
| 1e3i_A | 376 | Alcohol dehydrogenase, class II; HET: NAD; 2.08A { | 85.78 | |
| 4fgs_A | 273 | Probable dehydrogenase protein; PSI-biology, nysgr | 85.72 | |
| 3swr_A | 1002 | DNA (cytosine-5)-methyltransferase 1; epigenetics, | 85.67 | |
| 1p0f_A | 373 | NADP-dependent alcohol dehydrogenase; ADH topology | 85.61 | |
| 3pwz_A | 272 | Shikimate dehydrogenase 3; alpha-beta, oxidoreduct | 85.6 | |
| 2d8a_A | 348 | PH0655, probable L-threonine 3-dehydrogenase; pyro | 85.44 | |
| 1cdo_A | 374 | Alcohol dehydrogenase; oxidoreductase, oxidoreduct | 85.42 | |
| 3zwc_A | 742 | Peroxisomal bifunctional enzyme; beta oxidation pa | 85.42 | |
| 3h7a_A | 252 | Short chain dehydrogenase; oxidoreductase, PSI-2, | 85.3 | |
| 2hcy_A | 347 | Alcohol dehydrogenase 1; tetramer of asymmetric di | 85.27 | |
| 3m6i_A | 363 | L-arabinitol 4-dehydrogenase; medium chain dehydro | 85.06 | |
| 3qiv_A | 253 | Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR | 85.0 | |
| 3two_A | 348 | Mannitol dehydrogenase; cinnamyl-alcohol dehydroge | 84.66 | |
| 2fzw_A | 373 | Alcohol dehydrogenase class III CHI chain; S-nitro | 84.63 | |
| 1vj0_A | 380 | Alcohol dehydrogenase, zinc-containing; TM0436, st | 84.63 | |
| 3uog_A | 363 | Alcohol dehydrogenase; structural genomics, protei | 84.44 | |
| 2jhf_A | 374 | Alcohol dehydrogenase E chain; oxidoreductase, met | 84.42 | |
| 4ej6_A | 370 | Putative zinc-binding dehydrogenase; structural ge | 84.3 | |
| 3tfo_A | 264 | Putative 3-oxoacyl-(acyl-carrier-protein) reducta; | 83.84 | |
| 3rkr_A | 262 | Short chain oxidoreductase; rossmann fold; HET: NA | 83.64 | |
| 3imf_A | 257 | Short chain dehydrogenase; structural genomics, in | 83.57 | |
| 1pqw_A | 198 | Polyketide synthase; rossmann fold, dimer, structu | 83.29 | |
| 3gaf_A | 256 | 7-alpha-hydroxysteroid dehydrogenase; seattle stru | 83.28 | |
| 1uuf_A | 369 | YAHK, zinc-type alcohol dehydrogenase-like protein | 83.22 | |
| 4dvj_A | 363 | Putative zinc-dependent alcohol dehydrogenase Pro; | 83.11 | |
| 3tjr_A | 301 | Short chain dehydrogenase; structural genomics, se | 83.04 | |
| 4fs3_A | 256 | Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; | 82.97 | |
| 1rjd_A | 334 | PPM1P, carboxy methyl transferase for protein phos | 82.96 | |
| 3e03_A | 274 | Short chain dehydrogenase; structural genomics, PS | 82.82 | |
| 3jv7_A | 345 | ADH-A; dehydrogenase, nucleotide binding, rossmann | 82.77 | |
| 3sju_A | 279 | Keto reductase; short-chain dehydrogenase, oxidore | 82.68 | |
| 3ado_A | 319 | Lambda-crystallin; L-gulonate 3-dehydrogenase, str | 82.65 | |
| 2jah_A | 247 | Clavulanic acid dehydrogenase; short-chain dehydro | 82.4 | |
| 1jvb_A | 347 | NAD(H)-dependent alcohol dehydrogenase; archaeon, | 81.6 | |
| 3av4_A | 1330 | DNA (cytosine-5)-methyltransferase 1; CXXC-type zi | 81.53 | |
| 1v3u_A | 333 | Leukotriene B4 12- hydroxydehydrogenase/prostaglan | 81.46 | |
| 1y8q_A | 346 | Ubiquitin-like 1 activating enzyme E1A; SUMO, hete | 81.23 | |
| 4eez_A | 348 | Alcohol dehydrogenase 1; site-saturation mutagenes | 81.21 | |
| 3o38_A | 266 | Short chain dehydrogenase; tuberculosis, ortholog | 81.11 | |
| 4iin_A | 271 | 3-ketoacyl-acyl carrier protein reductase (FABG); | 81.03 | |
| 4a2c_A | 346 | Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc | 80.87 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 80.79 | |
| 2h6e_A | 344 | ADH-4, D-arabinose 1-dehydrogenase; rossman fold, | 80.61 | |
| 3r1i_A | 276 | Short-chain type dehydrogenase/reductase; structur | 80.6 | |
| 3ip1_A | 404 | Alcohol dehydrogenase, zinc-containing; structural | 80.51 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 80.5 | |
| 1yb1_A | 272 | 17-beta-hydroxysteroid dehydrogenase type XI; shor | 80.35 | |
| 3lyl_A | 247 | 3-oxoacyl-(acyl-carrier-protein) reductase; alpha | 80.13 | |
| 1rjw_A | 339 | ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD | 80.04 |
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=99.84 E-value=7.3e-21 Score=150.15 Aligned_cols=132 Identities=24% Similarity=0.335 Sum_probs=102.5
Q ss_pred cccccHHHHHHHHhhCCCCCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcC-ChHHHHHHHHHHHHhcCCCCccccccc
Q 038343 2 SIWPSSLLLSEFILSFPEIFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDG-DHLTLANMRSNLELNQLSTDTSLLESY 80 (191)
Q Consensus 2 ~~W~~a~~L~~~l~~~~~~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~-~~~~l~~~~~n~~~n~~~~~~~~~~~~ 80 (191)
.+|+++..|++++.......++++|||||||+|.+++.+++.|+.+|+++|+ ++.+++.+++|+..|....... ..
T Consensus 59 ~~~~~~~~l~~~l~~~~~~~~~~~vLDlG~G~G~~~~~~a~~~~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~---~~ 135 (281)
T 3bzb_A 59 HVWSGARALADTLCWQPELIAGKTVCELGAGAGLVSIVAFLAGADQVVATDYPDPEILNSLESNIREHTANSCSS---ET 135 (281)
T ss_dssp ---CHHHHHHHHHHHCGGGTTTCEEEETTCTTSHHHHHHHHTTCSEEEEEECSCHHHHHHHHHHHHTTCC----------
T ss_pred eeecHHHHHHHHHHhcchhcCCCeEEEecccccHHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHHhhhhhccc---cc
Confidence 5899999999999988766788899999999999999999988779999999 8999999999996553210000 00
Q ss_pred CCCCeeEEEeecCCCCCcCCC---CCCCCCEEEEcccccCCCChHHHHHHHHHHhc---c--CC
Q 038343 81 EDPNVVQCVHLPWESASESGL---SAFVPEIILGADILYDRSCFPDLVRILAILLN---R--RK 136 (191)
Q Consensus 81 ~~~~~i~~~~ldw~~~~~~~~---~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~---~--~g 136 (191)
....++.+..++|++...... ...+||+|+++|++|+......+++.+.++|+ | +|
T Consensus 136 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~dvl~~~~~~~~ll~~l~~~Lk~~~p~~gG 199 (281)
T 3bzb_A 136 VKRASPKVVPYRWGDSPDSLQRCTGLQRFQVVLLADLLSFHQAHDALLRSVKMLLALPANDPTA 199 (281)
T ss_dssp ---CCCEEEECCTTSCTHHHHHHHSCSSBSEEEEESCCSCGGGHHHHHHHHHHHBCCTTTCTTC
T ss_pred CCCCCeEEEEecCCCccHHHHhhccCCCCCEEEEeCcccChHHHHHHHHHHHHHhcccCCCCCC
Confidence 001257888999987543211 34689999999999999999999999999999 8 65
|
| >4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.4e-16 Score=129.96 Aligned_cols=109 Identities=20% Similarity=0.247 Sum_probs=91.8
Q ss_pred HHhhCCCCCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeec
Q 038343 13 FILSFPEIFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLP 92 (191)
Q Consensus 13 ~l~~~~~~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ld 92 (191)
.|.++...++|++|||||||+|++++++++.|+++|+++|.++ +++.++++++.|++. .+|.+...+
T Consensus 74 Ai~~~~~~~~~k~VLDvG~GtGiLs~~Aa~aGA~~V~ave~s~-~~~~a~~~~~~n~~~------------~~i~~i~~~ 140 (376)
T 4hc4_A 74 GILRNWAALRGKTVLDVGAGTGILSIFCAQAGARRVYAVEASA-IWQQAREVVRFNGLE------------DRVHVLPGP 140 (376)
T ss_dssp HHHTTHHHHTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-THHHHHHHHHHTTCT------------TTEEEEESC
T ss_pred HHHhCHHhcCCCEEEEeCCCccHHHHHHHHhCCCEEEEEeChH-HHHHHHHHHHHcCCC------------ceEEEEeee
Confidence 3455566678999999999999999999999999999999985 889999999999976 568888888
Q ss_pred CCCCCcCCCCCCCCCEEEE---cccccCCCChHHHHHHHHHHhccCCCC
Q 038343 93 WESASESGLSAFVPEIILG---ADILYDRSCFPDLVRILAILLNRRKSV 138 (191)
Q Consensus 93 w~~~~~~~~~~~~fDvIi~---~d~ly~~~~~~~ll~~l~~ll~~~g~~ 138 (191)
..+.. + +.+||+|++ ...+.+...++.++....++|+|+|..
T Consensus 141 ~~~~~---l-pe~~DvivsE~~~~~l~~e~~l~~~l~a~~r~Lkp~G~~ 185 (376)
T 4hc4_A 141 VETVE---L-PEQVDAIVSEWMGYGLLHESMLSSVLHARTKWLKEGGLL 185 (376)
T ss_dssp TTTCC---C-SSCEEEEECCCCBTTBTTTCSHHHHHHHHHHHEEEEEEE
T ss_pred eeeec---C-CccccEEEeecccccccccchhhhHHHHHHhhCCCCceE
Confidence 76543 2 258999998 556677889999999999999999754
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.63 E-value=3.5e-15 Score=112.22 Aligned_cols=98 Identities=16% Similarity=0.204 Sum_probs=84.4
Q ss_pred cEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCCCCCC
Q 038343 25 SCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESGLSAF 104 (191)
Q Consensus 25 ~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~~~~~ 104 (191)
+|||+|||+|..+..+++....+|+++|+++.+++.+++++..++.. .++.+...|+.+.. +.++
T Consensus 46 ~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~------------~~~~~~~~d~~~~~---~~~~ 110 (219)
T 3dlc_A 46 TCIDIGSGPGALSIALAKQSDFSIRALDFSKHMNEIALKNIADANLN------------DRIQIVQGDVHNIP---IEDN 110 (219)
T ss_dssp EEEEETCTTSHHHHHHHHHSEEEEEEEESCHHHHHHHHHHHHHTTCT------------TTEEEEECBTTBCS---SCTT
T ss_pred EEEEECCCCCHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHhcccc------------CceEEEEcCHHHCC---CCcc
Confidence 99999999999999888763349999999999999999999887754 45788888876532 3457
Q ss_pred CCCEEEEcccccCCCChHHHHHHHHHHhccCCC
Q 038343 105 VPEIILGADILYDRSCFPDLVRILAILLNRRKS 137 (191)
Q Consensus 105 ~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~ 137 (191)
+||+|++..++++..+...+++.+.++|+|+|.
T Consensus 111 ~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~ 143 (219)
T 3dlc_A 111 YADLIVSRGSVFFWEDVATAFREIYRILKSGGK 143 (219)
T ss_dssp CEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEE
T ss_pred cccEEEECchHhhccCHHHHHHHHHHhCCCCCE
Confidence 899999999999999999999999999999974
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=99.62 E-value=1.5e-15 Score=117.31 Aligned_cols=114 Identities=15% Similarity=0.027 Sum_probs=91.8
Q ss_pred HHHHhhCCCCCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEe
Q 038343 11 SEFILSFPEIFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVH 90 (191)
Q Consensus 11 ~~~l~~~~~~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ 90 (191)
.+.+.......++.+|||+|||+|..+..+++....+|+++|+++.+++.++++++.+++. .++.+..
T Consensus 25 ~~~l~~~~~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~------------~~v~~~~ 92 (256)
T 1nkv_A 25 YATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVS------------ERVHFIH 92 (256)
T ss_dssp HHHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCT------------TTEEEEE
T ss_pred HHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCC------------cceEEEE
Confidence 3444443344578899999999999998777652338999999999999999999887754 3578888
Q ss_pred ecCCCCCcCCCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCcc
Q 038343 91 LPWESASESGLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVSS 140 (191)
Q Consensus 91 ldw~~~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~~ 140 (191)
.|+.+.. . +++||+|++..++++..+...+++.+.++|+|||....
T Consensus 93 ~d~~~~~---~-~~~fD~V~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~ 138 (256)
T 1nkv_A 93 NDAAGYV---A-NEKCDVAACVGATWIAGGFAGAEELLAQSLKPGGIMLI 138 (256)
T ss_dssp SCCTTCC---C-SSCEEEEEEESCGGGTSSSHHHHHHHTTSEEEEEEEEE
T ss_pred CChHhCC---c-CCCCCEEEECCChHhcCCHHHHHHHHHHHcCCCeEEEE
Confidence 8887643 2 46899999999999999999999999999999986544
|
| >3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.62 E-value=9.2e-16 Score=113.74 Aligned_cols=105 Identities=12% Similarity=0.104 Sum_probs=83.3
Q ss_pred CCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCC
Q 038343 21 FSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESG 100 (191)
Q Consensus 21 ~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~ 100 (191)
.++.+|||+|||+|..++.+++.+..+|+++|+++.+++.+++|++.++.. ++.+...|+.+... .
T Consensus 43 ~~~~~vLDlgcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-------------~v~~~~~d~~~~~~-~ 108 (189)
T 3p9n_A 43 LTGLAVLDLYAGSGALGLEALSRGAASVLFVESDQRSAAVIARNIEALGLS-------------GATLRRGAVAAVVA-A 108 (189)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHTTCSEEEEEECCHHHHHHHHHHHHHHTCS-------------CEEEEESCHHHHHH-H
T ss_pred CCCCEEEEeCCCcCHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCC-------------ceEEEEccHHHHHh-h
Confidence 477899999999999999777777778999999999999999999988752 46777777654321 1
Q ss_pred CCCCCCCEEEEcccccCC-CChHHHHHHHHH--HhccCCCCc
Q 038343 101 LSAFVPEIILGADILYDR-SCFPDLVRILAI--LLNRRKSVS 139 (191)
Q Consensus 101 ~~~~~fDvIi~~d~ly~~-~~~~~ll~~l~~--ll~~~g~~~ 139 (191)
+...+||+|++..+++.. .....+++.+.+ +|+|+|...
T Consensus 109 ~~~~~fD~i~~~~p~~~~~~~~~~~l~~~~~~~~L~pgG~l~ 150 (189)
T 3p9n_A 109 GTTSPVDLVLADPPYNVDSADVDAILAALGTNGWTREGTVAV 150 (189)
T ss_dssp CCSSCCSEEEECCCTTSCHHHHHHHHHHHHHSSSCCTTCEEE
T ss_pred ccCCCccEEEECCCCCcchhhHHHHHHHHHhcCccCCCeEEE
Confidence 224689999997665443 678899999999 999997543
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=5e-15 Score=114.44 Aligned_cols=106 Identities=13% Similarity=0.124 Sum_probs=89.6
Q ss_pred CCCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCc
Q 038343 19 EIFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASE 98 (191)
Q Consensus 19 ~~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~ 98 (191)
...++.+|||+|||+|..+..+++.+..+|+++|+++.+++.+++++..++.. .++.+...|+.+..
T Consensus 43 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~------------~~~~~~~~d~~~~~- 109 (257)
T 3f4k_A 43 ELTDDAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAVKANCA------------DRVKGITGSMDNLP- 109 (257)
T ss_dssp CCCTTCEEEEETCTTSHHHHHHHHHCCSEEEEEESCHHHHHHHHHHHHHTTCT------------TTEEEEECCTTSCS-
T ss_pred cCCCCCeEEEeCCCCCHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHcCCC------------CceEEEECChhhCC-
Confidence 44567899999999999999888876559999999999999999999888765 45788888875442
Q ss_pred CCCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCcc
Q 038343 99 SGLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVSS 140 (191)
Q Consensus 99 ~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~~ 140 (191)
+.+++||+|++..++++. +...+++.+.++|+|||....
T Consensus 110 --~~~~~fD~v~~~~~l~~~-~~~~~l~~~~~~L~pgG~l~~ 148 (257)
T 3f4k_A 110 --FQNEELDLIWSEGAIYNI-GFERGMNEWSKYLKKGGFIAV 148 (257)
T ss_dssp --SCTTCEEEEEEESCSCCC-CHHHHHHHHHTTEEEEEEEEE
T ss_pred --CCCCCEEEEEecChHhhc-CHHHHHHHHHHHcCCCcEEEE
Confidence 345789999999999998 799999999999999986543
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} | Back alignment and structure |
|---|
Probab=99.62 E-value=3.9e-15 Score=116.10 Aligned_cols=118 Identities=15% Similarity=0.134 Sum_probs=94.6
Q ss_pred HHHHHHHhhCCCCCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeE
Q 038343 8 LLLSEFILSFPEIFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQ 87 (191)
Q Consensus 8 ~~L~~~l~~~~~~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~ 87 (191)
..+.+.+.......++.+|||+|||+|..+..+++....+|+++|+++.+++.+++++..++.. .++.
T Consensus 47 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~------------~~~~ 114 (273)
T 3bus_A 47 DRLTDEMIALLDVRSGDRVLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANARATAAGLA------------NRVT 114 (273)
T ss_dssp HHHHHHHHHHSCCCTTCEEEEESCTTSHHHHHHHHHSCCEEEEEESCHHHHHHHHHHHHHTTCT------------TTEE
T ss_pred HHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHhcCCC------------cceE
Confidence 3445555554445578899999999999999877643349999999999999999998887654 3577
Q ss_pred EEeecCCCCCcCCCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCcc
Q 038343 88 CVHLPWESASESGLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVSS 140 (191)
Q Consensus 88 ~~~ldw~~~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~~ 140 (191)
+...|+.+.. +++++||+|++.+++++..+...+++.+.++|+|+|....
T Consensus 115 ~~~~d~~~~~---~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i 164 (273)
T 3bus_A 115 FSYADAMDLP---FEDASFDAVWALESLHHMPDRGRALREMARVLRPGGTVAI 164 (273)
T ss_dssp EEECCTTSCC---SCTTCEEEEEEESCTTTSSCHHHHHHHHHTTEEEEEEEEE
T ss_pred EEECccccCC---CCCCCccEEEEechhhhCCCHHHHHHHHHHHcCCCeEEEE
Confidence 8888876542 3456899999999999999999999999999999986543
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=1.3e-14 Score=111.44 Aligned_cols=116 Identities=15% Similarity=0.044 Sum_probs=95.2
Q ss_pred ccccHHHHHHHHhhCCCCCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCC
Q 038343 3 IWPSSLLLSEFILSFPEIFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYED 82 (191)
Q Consensus 3 ~W~~a~~L~~~l~~~~~~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~ 82 (191)
-|+....+.+.+.. .++.+|||+|||+|..+..++..+. +|+++|+++.+++.+++++..++..
T Consensus 6 ~~~~~~~~~~~~~~----~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~----------- 69 (239)
T 1xxl_A 6 HHHSLGLMIKTAEC----RAEHRVLDIGAGAGHTALAFSPYVQ-ECIGVDATKEMVEVASSFAQEKGVE----------- 69 (239)
T ss_dssp CHHHHHHHHHHHTC----CTTCEEEEESCTTSHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHHTCC-----------
T ss_pred cCCCcchHHHHhCc----CCCCEEEEEccCcCHHHHHHHHhCC-EEEEEECCHHHHHHHHHHHHHcCCC-----------
Confidence 46666666666532 3577999999999999999998876 9999999999999999998877643
Q ss_pred CCeeEEEeecCCCCCcCCCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCc
Q 038343 83 PNVVQCVHLPWESASESGLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVS 139 (191)
Q Consensus 83 ~~~i~~~~ldw~~~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~ 139 (191)
++.+...|+.+.. +.+++||+|++..++++..+...+++.+.++|+|+|...
T Consensus 70 --~v~~~~~d~~~~~---~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~ 121 (239)
T 1xxl_A 70 --NVRFQQGTAESLP---FPDDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFL 121 (239)
T ss_dssp --SEEEEECBTTBCC---SCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEE
T ss_pred --CeEEEecccccCC---CCCCcEEEEEECCchhhccCHHHHHHHHHHHcCCCcEEE
Confidence 4677777775432 345689999999999999999999999999999998544
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=6.7e-15 Score=114.63 Aligned_cols=105 Identities=15% Similarity=0.104 Sum_probs=89.8
Q ss_pred CCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcC
Q 038343 20 IFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASES 99 (191)
Q Consensus 20 ~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~ 99 (191)
..++.+|||+|||+|..+..+++.+..+|+++|+++.+++.++++++.++.. .++.+...|+.+..
T Consensus 44 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~------------~~v~~~~~d~~~~~-- 109 (267)
T 3kkz_A 44 LTEKSLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFNRNARQSGLQ------------NRVTGIVGSMDDLP-- 109 (267)
T ss_dssp CCTTCEEEEETCTTCHHHHHHHTTCSSEEEEEESCHHHHHHHHHHHHHTTCT------------TTEEEEECCTTSCC--
T ss_pred CCCCCEEEEeCCCCCHHHHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcCCC------------cCcEEEEcChhhCC--
Confidence 4578899999999999999888886569999999999999999999888754 45888888886543
Q ss_pred CCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCcc
Q 038343 100 GLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVSS 140 (191)
Q Consensus 100 ~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~~ 140 (191)
+.+++||+|++..++++. +...+++.+.++|+|||....
T Consensus 110 -~~~~~fD~i~~~~~~~~~-~~~~~l~~~~~~LkpgG~l~~ 148 (267)
T 3kkz_A 110 -FRNEELDLIWSEGAIYNI-GFERGLNEWRKYLKKGGYLAV 148 (267)
T ss_dssp -CCTTCEEEEEESSCGGGT-CHHHHHHHHGGGEEEEEEEEE
T ss_pred -CCCCCEEEEEEcCCceec-CHHHHHHHHHHHcCCCCEEEE
Confidence 345789999999999998 799999999999999976443
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=1.5e-14 Score=114.69 Aligned_cols=111 Identities=9% Similarity=-0.019 Sum_probs=90.0
Q ss_pred HHhhCCCCCCCCcEEEeCCCccHHHHHHHhc-CCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEee
Q 038343 13 FILSFPEIFSNKSCFEVGSGVGLVGICLAHV-KASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHL 91 (191)
Q Consensus 13 ~l~~~~~~~~~~~VLElG~GtG~~~~~la~~-g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~l 91 (191)
.+.......++.+|||+|||+|..+..+++. |. +|+++|+++.+++.+++++..+++. .++.+...
T Consensus 63 ~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~------------~~v~~~~~ 129 (302)
T 3hem_A 63 LALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYDV-NVIGLTLSENQYAHDKAMFDEVDSP------------RRKEVRIQ 129 (302)
T ss_dssp HHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEECCHHHHHHHHHHHHHSCCS------------SCEEEEEC
T ss_pred HHHHHcCCCCcCEEEEeeccCcHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHhcCCC------------CceEEEEC
Confidence 3444444557889999999999999988876 74 8999999999999999999887754 45778888
Q ss_pred cCCCCCcCCCCCCCCCEEEEcccccCCCCh---------HHHHHHHHHHhccCCCCcccc
Q 038343 92 PWESASESGLSAFVPEIILGADILYDRSCF---------PDLVRILAILLNRRKSVSSSR 142 (191)
Q Consensus 92 dw~~~~~~~~~~~~fDvIi~~d~ly~~~~~---------~~ll~~l~~ll~~~g~~~~~~ 142 (191)
|+.+. +++||+|++..++++..+. ..+++.+.++|+|||......
T Consensus 130 d~~~~------~~~fD~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 183 (302)
T 3hem_A 130 GWEEF------DEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHT 183 (302)
T ss_dssp CGGGC------CCCCSEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEE
T ss_pred CHHHc------CCCccEEEEcchHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 87543 4689999999999988544 799999999999998655433
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=2.3e-14 Score=112.69 Aligned_cols=112 Identities=10% Similarity=0.051 Sum_probs=90.1
Q ss_pred HHHHHhhCCCCCCCCcEEEeCCCccHHHHHHH-hcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEE
Q 038343 10 LSEFILSFPEIFSNKSCFEVGSGVGLVGICLA-HVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQC 88 (191)
Q Consensus 10 L~~~l~~~~~~~~~~~VLElG~GtG~~~~~la-~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~ 88 (191)
+.+.+.......++.+|||+|||+|..+..++ +.|. +|+++|+++.+++.+++++...+.. .++.+
T Consensus 52 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~gvd~s~~~~~~a~~~~~~~~~~------------~~~~~ 118 (287)
T 1kpg_A 52 KIDLALGKLGLQPGMTLLDVGCGWGATMMRAVEKYDV-NVVGLTLSKNQANHVQQLVANSENL------------RSKRV 118 (287)
T ss_dssp HHHHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTCCCC------------SCEEE
T ss_pred HHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCC------------CCeEE
Confidence 44455555555578899999999999998777 5666 9999999999999999988776543 35777
Q ss_pred EeecCCCCCcCCCCCCCCCEEEEcccccCC--CChHHHHHHHHHHhccCCCCcc
Q 038343 89 VHLPWESASESGLSAFVPEIILGADILYDR--SCFPDLVRILAILLNRRKSVSS 140 (191)
Q Consensus 89 ~~ldw~~~~~~~~~~~~fDvIi~~d~ly~~--~~~~~ll~~l~~ll~~~g~~~~ 140 (191)
...|+.+. + ++||+|++.+++++. .+...+++.+.++|+|||....
T Consensus 119 ~~~d~~~~-----~-~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~ 166 (287)
T 1kpg_A 119 LLAGWEQF-----D-EPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLL 166 (287)
T ss_dssp EESCGGGC-----C-CCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEE
T ss_pred EECChhhC-----C-CCeeEEEEeCchhhcChHHHHHHHHHHHHhcCCCCEEEE
Confidence 77776432 2 689999999999987 6889999999999999986554
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.59 E-value=9e-15 Score=113.42 Aligned_cols=102 Identities=19% Similarity=0.063 Sum_probs=86.5
Q ss_pred CCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCCC
Q 038343 22 SNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESGL 101 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~~ 101 (191)
++.+|||+|||+|..+..+++.+. +|+++|+++.+++.+++++..++.. ++.+...|..+.. +
T Consensus 37 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~-------------~v~~~~~d~~~l~---~ 99 (260)
T 1vl5_A 37 GNEEVLDVATGGGHVANAFAPFVK-KVVAFDLTEDILKVARAFIEGNGHQ-------------QVEYVQGDAEQMP---F 99 (260)
T ss_dssp SCCEEEEETCTTCHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHTTCC-------------SEEEEECCC-CCC---S
T ss_pred CCCEEEEEeCCCCHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHHHhcCCC-------------ceEEEEecHHhCC---C
Confidence 677999999999999999988876 9999999999999999998776643 4677777765532 4
Q ss_pred CCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCcc
Q 038343 102 SAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVSS 140 (191)
Q Consensus 102 ~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~~ 140 (191)
++++||+|++..++++..+...+++.+.++|+|||....
T Consensus 100 ~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~~ 138 (260)
T 1vl5_A 100 TDERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLL 138 (260)
T ss_dssp CTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEE
T ss_pred CCCCEEEEEEhhhhHhcCCHHHHHHHHHHHcCCCCEEEE
Confidence 457899999999999999999999999999999986554
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.59 E-value=8.7e-15 Score=113.80 Aligned_cols=118 Identities=14% Similarity=0.229 Sum_probs=90.6
Q ss_pred HHHHHHHHhhCCCCC-CCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCe
Q 038343 7 SLLLSEFILSFPEIF-SNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNV 85 (191)
Q Consensus 7 a~~L~~~l~~~~~~~-~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~ 85 (191)
+..|+.|+ ... ++.+|||+|||+|..++.+++.+..+|+++|+++.+++.+++|+..++.. .+
T Consensus 37 ~~ll~~~~----~~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~------------~~ 100 (259)
T 3lpm_A 37 AVLLAKFS----YLPIRKGKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKRSVAYNQLE------------DQ 100 (259)
T ss_dssp HHHHHHHC----CCCSSCCEEEETTCTTTHHHHHHHTTCCCEEEEECCSHHHHHHHHHHHHHTTCT------------TT
T ss_pred HHHHHHHh----cCCCCCCEEEEcCCchhHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCc------------cc
Confidence 55666664 223 57799999999999999999887669999999999999999999998865 45
Q ss_pred eEEEeecCCCCCcCCCCCCCCCEEEEcccccCC--------------------CChHHHHHHHHHHhccCCCCccc
Q 038343 86 VQCVHLPWESASESGLSAFVPEIILGADILYDR--------------------SCFPDLVRILAILLNRRKSVSSS 141 (191)
Q Consensus 86 i~~~~ldw~~~~~~~~~~~~fDvIi~~d~ly~~--------------------~~~~~ll~~l~~ll~~~g~~~~~ 141 (191)
+.+...|+.+... .+..++||+|+++.+++.. ...+.+++.+.++|+|+|....+
T Consensus 101 v~~~~~D~~~~~~-~~~~~~fD~Ii~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 175 (259)
T 3lpm_A 101 IEIIEYDLKKITD-LIPKERADIVTCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFV 175 (259)
T ss_dssp EEEECSCGGGGGG-TSCTTCEEEEEECCCC-----------------------HHHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEEEECcHHHhhh-hhccCCccEEEECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEE
Confidence 7888888765432 2335789999998776544 22467999999999999865543
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 | Back alignment and structure |
|---|
Probab=99.59 E-value=1e-14 Score=115.23 Aligned_cols=106 Identities=9% Similarity=0.037 Sum_probs=89.4
Q ss_pred CCCCCCcEEEeCCCccHHHHHHHhc-CCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCC
Q 038343 19 EIFSNKSCFEVGSGVGLVGICLAHV-KASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESAS 97 (191)
Q Consensus 19 ~~~~~~~VLElG~GtG~~~~~la~~-g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~ 97 (191)
...++.+|||+|||+|..+..+++. +. +|+++|+++.+++.+++++...+.. .++.+...|+.+..
T Consensus 79 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~------------~~~~~~~~d~~~~~ 145 (297)
T 2o57_A 79 VLQRQAKGLDLGAGYGGAARFLVRKFGV-SIDCLNIAPVQNKRNEEYNNQAGLA------------DNITVKYGSFLEIP 145 (297)
T ss_dssp CCCTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHHHTCT------------TTEEEEECCTTSCS
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHHHhcCCC------------cceEEEEcCcccCC
Confidence 4457789999999999999877775 66 9999999999999999998877754 45788888876542
Q ss_pred cCCCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCcc
Q 038343 98 ESGLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVSS 140 (191)
Q Consensus 98 ~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~~ 140 (191)
+++++||+|++.+++++..+...+++.+.++|+|||....
T Consensus 146 ---~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~ 185 (297)
T 2o57_A 146 ---CEDNSYDFIWSQDAFLHSPDKLKVFQECARVLKPRGVMAI 185 (297)
T ss_dssp ---SCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEE
T ss_pred ---CCCCCEeEEEecchhhhcCCHHHHHHHHHHHcCCCeEEEE
Confidence 3457899999999999999999999999999999986544
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=3.6e-15 Score=112.44 Aligned_cols=111 Identities=13% Similarity=0.051 Sum_probs=88.1
Q ss_pred HHHHHHhhCCCCCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEE
Q 038343 9 LLSEFILSFPEIFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQC 88 (191)
Q Consensus 9 ~L~~~l~~~~~~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~ 88 (191)
.+..++.......++.+|||+|||+|..+..+++.+. +|+++|+++.+++.++++...+ .++.+
T Consensus 38 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~---------------~~~~~ 101 (216)
T 3ofk_A 38 RHTQLLRLSLSSGAVSNGLEIGCAAGAFTEKLAPHCK-RLTVIDVMPRAIGRACQRTKRW---------------SHISW 101 (216)
T ss_dssp HHHHHHHHHTTTSSEEEEEEECCTTSHHHHHHGGGEE-EEEEEESCHHHHHHHHHHTTTC---------------SSEEE
T ss_pred HHHHHHHHHcccCCCCcEEEEcCCCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHhcccC---------------CCeEE
Confidence 4445554444444677999999999999999998875 9999999999999999876543 24778
Q ss_pred EeecCCCCCcCCCCCCCCCEEEEcccccCCCCh---HHHHHHHHHHhccCCCCc
Q 038343 89 VHLPWESASESGLSAFVPEIILGADILYDRSCF---PDLVRILAILLNRRKSVS 139 (191)
Q Consensus 89 ~~ldw~~~~~~~~~~~~fDvIi~~d~ly~~~~~---~~ll~~l~~ll~~~g~~~ 139 (191)
...|+.+.. .+++||+|+++.++++..+. ..+++.+.++|+|+|...
T Consensus 102 ~~~d~~~~~----~~~~fD~v~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~ 151 (216)
T 3ofk_A 102 AATDILQFS----TAELFDLIVVAEVLYYLEDMTQMRTAIDNMVKMLAPGGHLV 151 (216)
T ss_dssp EECCTTTCC----CSCCEEEEEEESCGGGSSSHHHHHHHHHHHHHTEEEEEEEE
T ss_pred EEcchhhCC----CCCCccEEEEccHHHhCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence 888876654 34689999999999998877 466999999999997544
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A | Back alignment and structure |
|---|
Probab=99.57 E-value=7.1e-15 Score=111.12 Aligned_cols=115 Identities=10% Similarity=0.072 Sum_probs=86.6
Q ss_pred HHHHhhCCCCCCCCcEEEeCCCccHHHHHHHhcCC-CeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEE
Q 038343 11 SEFILSFPEIFSNKSCFEVGSGVGLVGICLAHVKA-SKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCV 89 (191)
Q Consensus 11 ~~~l~~~~~~~~~~~VLElG~GtG~~~~~la~~g~-~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~ 89 (191)
.+++.......++.+|||+|||+|..+..+++.+. .+|+++|+++.+++.+++++..+++... ...++.+.
T Consensus 18 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~--------~~~~v~~~ 89 (219)
T 3jwg_A 18 LGTVVAVLKSVNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEM--------QRKRISLF 89 (219)
T ss_dssp HHHHHHHHHHTTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHH--------HHTTEEEE
T ss_pred HHHHHHHHhhcCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccc--------cCcceEEE
Confidence 34443332234677999999999999998888764 5999999999999999999877654310 00147777
Q ss_pred eecCCCCCcCCCCCCCCCEEEEcccccCCCCh--HHHHHHHHHHhccCC
Q 038343 90 HLPWESASESGLSAFVPEIILGADILYDRSCF--PDLVRILAILLNRRK 136 (191)
Q Consensus 90 ~ldw~~~~~~~~~~~~fDvIi~~d~ly~~~~~--~~ll~~l~~ll~~~g 136 (191)
..|+.... ...++||+|++.+++++..+. ..+++.+.++|+|||
T Consensus 90 ~~d~~~~~---~~~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG 135 (219)
T 3jwg_A 90 QSSLVYRD---KRFSGYDAATVIEVIEHLDENRLQAFEKVLFEFTRPQT 135 (219)
T ss_dssp ECCSSSCC---GGGTTCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCSE
T ss_pred eCcccccc---cccCCCCEEEEHHHHHhCCHHHHHHHHHHHHHhhCCCE
Confidence 77764332 234689999999999998744 799999999999986
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=2.8e-14 Score=113.70 Aligned_cols=104 Identities=8% Similarity=-0.064 Sum_probs=88.5
Q ss_pred CCCCCcEEEeCCCccHHHHHHHhc-CCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCc
Q 038343 20 IFSNKSCFEVGSGVGLVGICLAHV-KASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASE 98 (191)
Q Consensus 20 ~~~~~~VLElG~GtG~~~~~la~~-g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~ 98 (191)
..++.+|||+|||+|..+..+++. +. +|+++|+++.+++.+++++..+++. .++.+...|..+..
T Consensus 115 ~~~~~~vLDiGcG~G~~~~~la~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~------------~~v~~~~~d~~~~~- 180 (312)
T 3vc1_A 115 AGPDDTLVDAGCGRGGSMVMAHRRFGS-RVEGVTLSAAQADFGNRRARELRID------------DHVRSRVCNMLDTP- 180 (312)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHHTTCT------------TTEEEEECCTTSCC-
T ss_pred CCCCCEEEEecCCCCHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCC------------CceEEEECChhcCC-
Confidence 557889999999999999988876 65 8999999999999999999988754 45788888876542
Q ss_pred CCCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCcc
Q 038343 99 SGLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVSS 140 (191)
Q Consensus 99 ~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~~ 140 (191)
+.+++||+|++.+++++. +...+++.+.++|+|||....
T Consensus 181 --~~~~~fD~V~~~~~l~~~-~~~~~l~~~~~~LkpgG~l~~ 219 (312)
T 3vc1_A 181 --FDKGAVTASWNNESTMYV-DLHDLFSEHSRFLKVGGRYVT 219 (312)
T ss_dssp --CCTTCEEEEEEESCGGGS-CHHHHHHHHHHHEEEEEEEEE
T ss_pred --CCCCCEeEEEECCchhhC-CHHHHHHHHHHHcCCCcEEEE
Confidence 345789999999999988 499999999999999986543
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=1.4e-14 Score=117.47 Aligned_cols=110 Identities=20% Similarity=0.234 Sum_probs=90.3
Q ss_pred HHhhCCCCCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeec
Q 038343 13 FILSFPEIFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLP 92 (191)
Q Consensus 13 ~l~~~~~~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ld 92 (191)
.+..+....++++|||+|||+|..++.+++.|+.+|+++|++ .+++.++++++.++.. .++.+...+
T Consensus 57 ~i~~~~~~~~~~~VLDvGcG~G~~~~~la~~g~~~v~gvD~s-~~l~~a~~~~~~~~~~------------~~v~~~~~d 123 (349)
T 3q7e_A 57 SMFHNRHLFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECS-SISDYAVKIVKANKLD------------HVVTIIKGK 123 (349)
T ss_dssp HHHTCHHHHTTCEEEEESCTTSHHHHHHHHTTCSEEEEEECS-THHHHHHHHHHHTTCT------------TTEEEEESC
T ss_pred HHHhccccCCCCEEEEEeccchHHHHHHHHCCCCEEEEECcH-HHHHHHHHHHHHcCCC------------CcEEEEECc
Confidence 344444456788999999999999999999888899999999 5999999999998865 458888888
Q ss_pred CCCCCcCCCCCCCCCEEEEccc---ccCCCChHHHHHHHHHHhccCCCC
Q 038343 93 WESASESGLSAFVPEIILGADI---LYDRSCFPDLVRILAILLNRRKSV 138 (191)
Q Consensus 93 w~~~~~~~~~~~~fDvIi~~d~---ly~~~~~~~ll~~l~~ll~~~g~~ 138 (191)
+.+.. ++.++||+|++..+ +.+....+.+++.+.++|+|||..
T Consensus 124 ~~~~~---~~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~l 169 (349)
T 3q7e_A 124 VEEVE---LPVEKVDIIISEWMGYCLFYESMLNTVLHARDKWLAPDGLI 169 (349)
T ss_dssp TTTCC---CSSSCEEEEEECCCBBTBTBTCCHHHHHHHHHHHEEEEEEE
T ss_pred HHHcc---CCCCceEEEEEccccccccCchhHHHHHHHHHHhCCCCCEE
Confidence 87652 34568999999654 445688999999999999999864
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=2.1e-14 Score=116.04 Aligned_cols=112 Identities=24% Similarity=0.332 Sum_probs=90.1
Q ss_pred HHHhhCCCCCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEee
Q 038343 12 EFILSFPEIFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHL 91 (191)
Q Consensus 12 ~~l~~~~~~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~l 91 (191)
+.+.+.....++.+|||+|||+|.+++.+++.|+.+|+++|+++ +++.++++++.++.. .++.+...
T Consensus 54 ~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~v~gvD~s~-~~~~a~~~~~~~~~~------------~~i~~~~~ 120 (340)
T 2fyt_A 54 DFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSE-ILYQAMDIIRLNKLE------------DTITLIKG 120 (340)
T ss_dssp HHHHHCGGGTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESST-HHHHHHHHHHHTTCT------------TTEEEEES
T ss_pred HHHHhhhhhcCCCEEEEeeccCcHHHHHHHHcCCCEEEEEChHH-HHHHHHHHHHHcCCC------------CcEEEEEe
Confidence 45555555667889999999999999999998877999999996 999999999988764 46788888
Q ss_pred cCCCCCcCCCCCCCCCEEEEccc---ccCCCChHHHHHHHHHHhccCCCCc
Q 038343 92 PWESASESGLSAFVPEIILGADI---LYDRSCFPDLVRILAILLNRRKSVS 139 (191)
Q Consensus 92 dw~~~~~~~~~~~~fDvIi~~d~---ly~~~~~~~ll~~l~~ll~~~g~~~ 139 (191)
|..+.. ++.++||+|++..+ +.+....+.+++.+.++|+|||...
T Consensus 121 d~~~~~---~~~~~~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 168 (340)
T 2fyt_A 121 KIEEVH---LPVEKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVY 168 (340)
T ss_dssp CTTTSC---CSCSCEEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred eHHHhc---CCCCcEEEEEEcCchhhccCHHHHHHHHHHHHhhcCCCcEEE
Confidence 776542 34468999998763 4556778889999999999998643
|
| >4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.2e-14 Score=114.24 Aligned_cols=104 Identities=17% Similarity=0.149 Sum_probs=87.6
Q ss_pred CCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCCC
Q 038343 22 SNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESGL 101 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~~ 101 (191)
++.+|||+|||+|..+..+++.+. +|+++|+++.+++.+++++..++.. .++.+...|+.+... +
T Consensus 68 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~------------~~v~~~~~d~~~~~~--~ 132 (285)
T 4htf_A 68 QKLRVLDAGGGEGQTAIKMAERGH-QVILCDLSAQMIDRAKQAAEAKGVS------------DNMQFIHCAAQDVAS--H 132 (285)
T ss_dssp SCCEEEEETCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHC-CCG------------GGEEEEESCGGGTGG--G
T ss_pred CCCEEEEeCCcchHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCC------------cceEEEEcCHHHhhh--h
Confidence 367999999999999998888876 9999999999999999998877653 357788888765431 3
Q ss_pred CCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCcc
Q 038343 102 SAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVSS 140 (191)
Q Consensus 102 ~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~~ 140 (191)
.+++||+|++..++++..+...+++.+.++|+|||....
T Consensus 133 ~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~ 171 (285)
T 4htf_A 133 LETPVDLILFHAVLEWVADPRSVLQTLWSVLRPGGVLSL 171 (285)
T ss_dssp CSSCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEE
T ss_pred cCCCceEEEECchhhcccCHHHHHHHHHHHcCCCeEEEE
Confidence 457899999999999999999999999999999986554
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.56 E-value=2.3e-14 Score=111.94 Aligned_cols=118 Identities=17% Similarity=0.155 Sum_probs=94.9
Q ss_pred HHHHHHHHhhCCCCCCCCcEEEeCCCccHHHHHHHhcC-CCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCe
Q 038343 7 SLLLSEFILSFPEIFSNKSCFEVGSGVGLVGICLAHVK-ASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNV 85 (191)
Q Consensus 7 a~~L~~~l~~~~~~~~~~~VLElG~GtG~~~~~la~~g-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~ 85 (191)
...+.+++.......++.+|||+|||+|..+..+++.+ ..+|+++|+++.+++.+++++..++.. +
T Consensus 22 ~~~l~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-------------~ 88 (276)
T 3mgg_A 22 AETLEKLLHHDTVYPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIK-------------N 88 (276)
T ss_dssp -CHHHHHHHTTCCCCTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCC-------------S
T ss_pred HHHHHHHHhhcccCCCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC-------------C
Confidence 34555666655555678899999999999999888774 349999999999999999998887643 4
Q ss_pred eEEEeecCCCCCcCCCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCcc
Q 038343 86 VQCVHLPWESASESGLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVSS 140 (191)
Q Consensus 86 i~~~~ldw~~~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~~ 140 (191)
+.+...|..+.. +.+++||+|++..++++..+...+++.+.++|+|+|....
T Consensus 89 ~~~~~~d~~~~~---~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~ 140 (276)
T 3mgg_A 89 VKFLQANIFSLP---FEDSSFDHIFVCFVLEHLQSPEEALKSLKKVLKPGGTITV 140 (276)
T ss_dssp EEEEECCGGGCC---SCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEE
T ss_pred cEEEEcccccCC---CCCCCeeEEEEechhhhcCCHHHHHHHHHHHcCCCcEEEE
Confidence 677777765432 3457899999999999999999999999999999986543
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.9e-14 Score=111.12 Aligned_cols=107 Identities=21% Similarity=0.198 Sum_probs=87.8
Q ss_pred hCCCCCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCC
Q 038343 16 SFPEIFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWES 95 (191)
Q Consensus 16 ~~~~~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~ 95 (191)
......++.+|||+|||+|..+..+++.+..+|+++|+++.+++.++++.. . .++.+...|..+
T Consensus 38 ~~~~~~~~~~vLD~GcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~--~--------------~~~~~~~~d~~~ 101 (253)
T 3g5l_A 38 KMLPDFNQKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLSERMLTEAKRKTT--S--------------PVVCYEQKAIED 101 (253)
T ss_dssp TTCCCCTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHCC--C--------------TTEEEEECCGGG
T ss_pred HhhhccCCCEEEEECCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHhhc--c--------------CCeEEEEcchhh
Confidence 333445788999999999999999998887799999999999999987654 1 346777777654
Q ss_pred CCcCCCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCccc
Q 038343 96 ASESGLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVSSS 141 (191)
Q Consensus 96 ~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~~~ 141 (191)
.. +.+++||+|++..++++..+...+++.+.++|+|||.....
T Consensus 102 ~~---~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~ 144 (253)
T 3g5l_A 102 IA---IEPDAYNVVLSSLALHYIASFDDICKKVYINLKSSGSFIFS 144 (253)
T ss_dssp CC---CCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEE
T ss_pred CC---CCCCCeEEEEEchhhhhhhhHHHHHHHHHHHcCCCcEEEEE
Confidence 32 34578999999999999999999999999999999875543
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=9.2e-15 Score=113.22 Aligned_cols=119 Identities=16% Similarity=0.061 Sum_probs=93.6
Q ss_pred ccccHHHHHHHHhhCCCCCCCCcEEEeCCCccHHHHHHHhc-CCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccC
Q 038343 3 IWPSSLLLSEFILSFPEIFSNKSCFEVGSGVGLVGICLAHV-KASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYE 81 (191)
Q Consensus 3 ~W~~a~~L~~~l~~~~~~~~~~~VLElG~GtG~~~~~la~~-g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~ 81 (191)
+++.+..+.+.+.......++.+|||+|||+|..+..+++. +. +|+++|+++.+++.++++....
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~------------- 101 (266)
T 3ujc_A 36 ISSGGLEATKKILSDIELNENSKVLDIGSGLGGGCMYINEKYGA-HTHGIDICSNIVNMANERVSGN------------- 101 (266)
T ss_dssp CSTTHHHHHHHHTTTCCCCTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHTCCSC-------------
T ss_pred cccchHHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHhhcC-------------
Confidence 34555556666666555567889999999999999988775 55 9999999999999988765432
Q ss_pred CCCeeEEEeecCCCCCcCCCCCCCCCEEEEcccccCC--CChHHHHHHHHHHhccCCCCcc
Q 038343 82 DPNVVQCVHLPWESASESGLSAFVPEIILGADILYDR--SCFPDLVRILAILLNRRKSVSS 140 (191)
Q Consensus 82 ~~~~i~~~~ldw~~~~~~~~~~~~fDvIi~~d~ly~~--~~~~~ll~~l~~ll~~~g~~~~ 140 (191)
.++.+...|+.+.. +++++||+|++..++++. .+...+++.+.++|+|||....
T Consensus 102 --~~~~~~~~d~~~~~---~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~ 157 (266)
T 3ujc_A 102 --NKIIFEANDILTKE---FPENNFDLIYSRDAILALSLENKNKLFQKCYKWLKPTGTLLI 157 (266)
T ss_dssp --TTEEEEECCTTTCC---CCTTCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred --CCeEEEECccccCC---CCCCcEEEEeHHHHHHhcChHHHHHHHHHHHHHcCCCCEEEE
Confidence 24777787776542 345789999999999998 8899999999999999986443
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.55 E-value=3e-14 Score=116.65 Aligned_cols=113 Identities=20% Similarity=0.267 Sum_probs=91.8
Q ss_pred HHHHHhhCCCCCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEE
Q 038343 10 LSEFILSFPEIFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCV 89 (191)
Q Consensus 10 L~~~l~~~~~~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~ 89 (191)
..+++.......++++|||+|||+|.+++.+++.|+++|+++|.+ .+++.++++++.++.. .++.+.
T Consensus 51 ~~~~i~~~~~~~~~~~VLDlGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~a~~~~~~~~~~------------~~v~~~ 117 (376)
T 3r0q_C 51 YFNAVFQNKHHFEGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMADHARALVKANNLD------------HIVEVI 117 (376)
T ss_dssp HHHHHHTTTTTTTTCEEEEESCTTTHHHHHHHHTTCSEEEEEESS-TTHHHHHHHHHHTTCT------------TTEEEE
T ss_pred HHHHHHhccccCCCCEEEEeccCcCHHHHHHHhcCCCEEEEEccH-HHHHHHHHHHHHcCCC------------CeEEEE
Confidence 345555566667899999999999999999999988899999999 9999999999998865 457888
Q ss_pred eecCCCCCcCCCCCCCCCEEEEcccccC---CCChHHHHHHHHHHhccCCCCc
Q 038343 90 HLPWESASESGLSAFVPEIILGADILYD---RSCFPDLVRILAILLNRRKSVS 139 (191)
Q Consensus 90 ~ldw~~~~~~~~~~~~fDvIi~~d~ly~---~~~~~~ll~~l~~ll~~~g~~~ 139 (191)
..|+.+.. ++ ++||+|++..+.|. ....+.+++.+.++|+|||...
T Consensus 118 ~~d~~~~~---~~-~~~D~Iv~~~~~~~l~~e~~~~~~l~~~~~~LkpgG~li 166 (376)
T 3r0q_C 118 EGSVEDIS---LP-EKVDVIISEWMGYFLLRESMFDSVISARDRWLKPTGVMY 166 (376)
T ss_dssp ESCGGGCC---CS-SCEEEEEECCCBTTBTTTCTHHHHHHHHHHHEEEEEEEE
T ss_pred ECchhhcC---cC-CcceEEEEcChhhcccchHHHHHHHHHHHhhCCCCeEEE
Confidence 88876543 22 68999999554553 3678899999999999998543
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A | Back alignment and structure |
|---|
Probab=99.55 E-value=1.2e-14 Score=109.76 Aligned_cols=105 Identities=11% Similarity=0.047 Sum_probs=82.4
Q ss_pred CCCCcEEEeCCCccHHHHHHHhcCC-CeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcC
Q 038343 21 FSNKSCFEVGSGVGLVGICLAHVKA-SKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASES 99 (191)
Q Consensus 21 ~~~~~VLElG~GtG~~~~~la~~g~-~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~ 99 (191)
.++.+|||+|||+|..+..+++.+. .+|+++|+++.+++.+++++..++.... ...++.+...|+....
T Consensus 28 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~--------~~~~v~~~~~d~~~~~-- 97 (217)
T 3jwh_A 28 SNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRN--------QWERLQLIQGALTYQD-- 97 (217)
T ss_dssp TTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHH--------HHTTEEEEECCTTSCC--
T ss_pred cCCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcc--------cCcceEEEeCCccccc--
Confidence 3567999999999999998888653 5999999999999999999876654310 0014777777764332
Q ss_pred CCCCCCCCEEEEcccccCCCCh--HHHHHHHHHHhccCC
Q 038343 100 GLSAFVPEIILGADILYDRSCF--PDLVRILAILLNRRK 136 (191)
Q Consensus 100 ~~~~~~fDvIi~~d~ly~~~~~--~~ll~~l~~ll~~~g 136 (191)
...++||+|++..++++.... ..+++.+.++|+|+|
T Consensus 98 -~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG 135 (217)
T 3jwh_A 98 -KRFHGYDAATVIEVIEHLDLSRLGAFERVLFEFAQPKI 135 (217)
T ss_dssp -GGGCSCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCSE
T ss_pred -ccCCCcCEEeeHHHHHcCCHHHHHHHHHHHHHHcCCCE
Confidence 233689999999999988744 899999999999996
|
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=2.7e-14 Score=111.45 Aligned_cols=102 Identities=10% Similarity=0.083 Sum_probs=81.4
Q ss_pred CCCCcEEEeCCCccHHHHHHHhcCC---CeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCC
Q 038343 21 FSNKSCFEVGSGVGLVGICLAHVKA---SKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESAS 97 (191)
Q Consensus 21 ~~~~~VLElG~GtG~~~~~la~~g~---~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~ 97 (191)
.++.+|||||||+|..++.+++... .+|+++|+++.|++.++++++..+.. .++.+...|..+..
T Consensus 69 ~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~------------~~v~~~~~D~~~~~ 136 (261)
T 4gek_A 69 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAP------------TPVDVIEGDIRDIA 136 (261)
T ss_dssp CTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCS------------SCEEEEESCTTTCC
T ss_pred CCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccC------------ceEEEeeccccccc
Confidence 3678999999999999988876421 28999999999999999998876643 46788887765432
Q ss_pred cCCCCCCCCCEEEEcccccCCCC--hHHHHHHHHHHhccCCCCc
Q 038343 98 ESGLSAFVPEIILGADILYDRSC--FPDLVRILAILLNRRKSVS 139 (191)
Q Consensus 98 ~~~~~~~~fDvIi~~d~ly~~~~--~~~ll~~l~~ll~~~g~~~ 139 (191)
..+||+|++..++++... ...+++.+.++|+|||...
T Consensus 137 -----~~~~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpGG~li 175 (261)
T 4gek_A 137 -----IENASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALV 175 (261)
T ss_dssp -----CCSEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEE
T ss_pred -----ccccccceeeeeeeecCchhHhHHHHHHHHHcCCCcEEE
Confidence 246999999999987653 4578999999999998543
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A | Back alignment and structure |
|---|
Probab=99.55 E-value=5e-14 Score=110.85 Aligned_cols=118 Identities=15% Similarity=0.122 Sum_probs=93.2
Q ss_pred cccHHHHHHHHhhCCCCCCCCcEEEeCCCccHHHHHHHhcC--CCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccC
Q 038343 4 WPSSLLLSEFILSFPEIFSNKSCFEVGSGVGLVGICLAHVK--ASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYE 81 (191)
Q Consensus 4 W~~a~~L~~~l~~~~~~~~~~~VLElG~GtG~~~~~la~~g--~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~ 81 (191)
|-....+..++.......++.+|||+|||+|..+..+++.. ..+|+++|+++.+++.+++++...+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~------------ 71 (284)
T 3gu3_A 4 YYNDDYVSFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLP------------ 71 (284)
T ss_dssp TCCHHHHHHHHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSS------------
T ss_pred ccchHHHHHHHHHHhccCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcC------------
Confidence 33444454444444555678899999999999999888762 2499999999999999999877654
Q ss_pred CCCeeEEEeecCCCCCcCCCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCc
Q 038343 82 DPNVVQCVHLPWESASESGLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVS 139 (191)
Q Consensus 82 ~~~~i~~~~ldw~~~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~ 139 (191)
.++.+...|..+.. + +++||+|++..++++..+...+++.+.++|+|||...
T Consensus 72 --~~v~~~~~d~~~~~---~-~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~ 123 (284)
T 3gu3_A 72 --YDSEFLEGDATEIE---L-NDKYDIAICHAFLLHMTTPETMLQKMIHSVKKGGKII 123 (284)
T ss_dssp --SEEEEEESCTTTCC---C-SSCEEEEEEESCGGGCSSHHHHHHHHHHTEEEEEEEE
T ss_pred --CceEEEEcchhhcC---c-CCCeeEEEECChhhcCCCHHHHHHHHHHHcCCCCEEE
Confidence 25777888876543 1 3589999999999999999999999999999998654
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.55 E-value=2.5e-13 Score=101.58 Aligned_cols=100 Identities=12% Similarity=0.110 Sum_probs=81.4
Q ss_pred CCCCCCcEEEeCCCccHHHHHHHhcC-CCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCC
Q 038343 19 EIFSNKSCFEVGSGVGLVGICLAHVK-ASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESAS 97 (191)
Q Consensus 19 ~~~~~~~VLElG~GtG~~~~~la~~g-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~ 97 (191)
...++.+|||+|||+|..++.+++.+ ..+|+++|+++.+++.+++|++.++.. ++.+...|+.+..
T Consensus 37 ~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-------------~v~~~~~d~~~~~ 103 (204)
T 3e05_A 37 RLQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVAR-------------NVTLVEAFAPEGL 103 (204)
T ss_dssp TCCTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTCT-------------TEEEEECCTTTTC
T ss_pred CCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-------------cEEEEeCChhhhh
Confidence 34467899999999999999888876 359999999999999999999888753 4677777765432
Q ss_pred cCCCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCC
Q 038343 98 ESGLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKS 137 (191)
Q Consensus 98 ~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~ 137 (191)
. ...+||+|++...++ ....+++.+.++|+|+|.
T Consensus 104 ~---~~~~~D~i~~~~~~~---~~~~~l~~~~~~LkpgG~ 137 (204)
T 3e05_A 104 D---DLPDPDRVFIGGSGG---MLEEIIDAVDRRLKSEGV 137 (204)
T ss_dssp T---TSCCCSEEEESCCTT---CHHHHHHHHHHHCCTTCE
T ss_pred h---cCCCCCEEEECCCCc---CHHHHHHHHHHhcCCCeE
Confidence 2 125799999987665 788999999999999974
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=2.7e-14 Score=105.99 Aligned_cols=102 Identities=15% Similarity=0.152 Sum_probs=84.9
Q ss_pred CCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCC
Q 038343 21 FSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESG 100 (191)
Q Consensus 21 ~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~ 100 (191)
.++.+|||+|||+|..+..+++.+. +|+++|+++.+++.+++++..++.. ++.+...|+.+..
T Consensus 31 ~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~-------------~~~~~~~d~~~~~--- 93 (199)
T 2xvm_A 31 VKPGKTLDLGCGNGRNSLYLAANGY-DVDAWDKNAMSIANVERIKSIENLD-------------NLHTRVVDLNNLT--- 93 (199)
T ss_dssp SCSCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHTCT-------------TEEEEECCGGGCC---
T ss_pred cCCCeEEEEcCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHhCCCC-------------CcEEEEcchhhCC---
Confidence 3667999999999999998888876 9999999999999999998877642 3677777765432
Q ss_pred CCCCCCCEEEEcccccCCC--ChHHHHHHHHHHhccCCCCcc
Q 038343 101 LSAFVPEIILGADILYDRS--CFPDLVRILAILLNRRKSVSS 140 (191)
Q Consensus 101 ~~~~~fDvIi~~d~ly~~~--~~~~ll~~l~~ll~~~g~~~~ 140 (191)
. .++||+|++..++++.. +...+++.+.++|+|+|....
T Consensus 94 ~-~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~~gG~l~~ 134 (199)
T 2xvm_A 94 F-DRQYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLI 134 (199)
T ss_dssp C-CCCEEEEEEESCGGGSCGGGHHHHHHHHHHTEEEEEEEEE
T ss_pred C-CCCceEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEE
Confidence 2 46899999999999876 789999999999999986443
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.54 E-value=4.5e-14 Score=106.92 Aligned_cols=111 Identities=11% Similarity=0.113 Sum_probs=87.8
Q ss_pred HHHHHhhCCCCCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEE
Q 038343 10 LSEFILSFPEIFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCV 89 (191)
Q Consensus 10 L~~~l~~~~~~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~ 89 (191)
+.+.+..... ++.+|||+|||+|..+..+++.+. +|+++|+++.+++.++++...++ .++.+.
T Consensus 28 ~~~~l~~~~~--~~~~vLDlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~--------------~~~~~~ 90 (227)
T 1ve3_A 28 LEPLLMKYMK--KRGKVLDLACGVGGFSFLLEDYGF-EVVGVDISEDMIRKAREYAKSRE--------------SNVEFI 90 (227)
T ss_dssp HHHHHHHSCC--SCCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT--------------CCCEEE
T ss_pred HHHHHHHhcC--CCCeEEEEeccCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcC--------------CCceEE
Confidence 3444444332 377999999999999999998877 99999999999999999988765 246777
Q ss_pred eecCCCCCcCCCCCCCCCEEEEccc--ccCCCChHHHHHHHHHHhccCCCCcc
Q 038343 90 HLPWESASESGLSAFVPEIILGADI--LYDRSCFPDLVRILAILLNRRKSVSS 140 (191)
Q Consensus 90 ~ldw~~~~~~~~~~~~fDvIi~~d~--ly~~~~~~~ll~~l~~ll~~~g~~~~ 140 (191)
..|+.+.. +.+++||+|++.++ +++..+...+++.+.++|+|+|....
T Consensus 91 ~~d~~~~~---~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~ 140 (227)
T 1ve3_A 91 VGDARKLS---FEDKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIM 140 (227)
T ss_dssp ECCTTSCC---SCTTCEEEEEEESCGGGCCHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred ECchhcCC---CCCCcEEEEEEcCchHhCCHHHHHHHHHHHHHHcCCCcEEEE
Confidence 77766532 34468999999999 66666788999999999999986543
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=7.8e-14 Score=111.27 Aligned_cols=112 Identities=11% Similarity=0.064 Sum_probs=90.1
Q ss_pred HHHHHhhCCCCCCCCcEEEeCCCccHHHHHHHhc-CCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEE
Q 038343 10 LSEFILSFPEIFSNKSCFEVGSGVGLVGICLAHV-KASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQC 88 (191)
Q Consensus 10 L~~~l~~~~~~~~~~~VLElG~GtG~~~~~la~~-g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~ 88 (191)
..+.+.......++.+|||+|||+|..+..+++. |. +|+++|+++.+++.+++++..++.. .++.+
T Consensus 78 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~------------~~v~~ 144 (318)
T 2fk8_A 78 KVDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFDV-NVIGLTLSKNQHARCEQVLASIDTN------------RSRQV 144 (318)
T ss_dssp HHHHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTSCCS------------SCEEE
T ss_pred HHHHHHHhcCCCCcCEEEEEcccchHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCC------------CceEE
Confidence 4445555555557889999999999999887776 76 9999999999999999998876644 35777
Q ss_pred EeecCCCCCcCCCCCCCCCEEEEcccccCC--CChHHHHHHHHHHhccCCCCcc
Q 038343 89 VHLPWESASESGLSAFVPEIILGADILYDR--SCFPDLVRILAILLNRRKSVSS 140 (191)
Q Consensus 89 ~~ldw~~~~~~~~~~~~fDvIi~~d~ly~~--~~~~~ll~~l~~ll~~~g~~~~ 140 (191)
...|+.+. + ++||+|++..++++. .+...+++.+.++|+|||....
T Consensus 145 ~~~d~~~~-----~-~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~ 192 (318)
T 2fk8_A 145 LLQGWEDF-----A-EPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTV 192 (318)
T ss_dssp EESCGGGC-----C-CCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEE
T ss_pred EECChHHC-----C-CCcCEEEEeChHHhcCHHHHHHHHHHHHHhcCCCcEEEE
Confidence 77776443 1 579999999999987 6789999999999999986554
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.54 E-value=3.1e-14 Score=108.80 Aligned_cols=103 Identities=13% Similarity=0.032 Sum_probs=85.4
Q ss_pred CCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCCC
Q 038343 22 SNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESGL 101 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~~ 101 (191)
++.+|||+|||+|..+..+++.+. +|+++|+++.+++.+++++...+.. .++.+...|+.+..
T Consensus 66 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~------------~~v~~~~~d~~~~~---- 128 (235)
T 3lcc_A 66 PLGRALVPGCGGGHDVVAMASPER-FVVGLDISESALAKANETYGSSPKA------------EYFSFVKEDVFTWR---- 128 (235)
T ss_dssp CCEEEEEETCTTCHHHHHHCBTTE-EEEEECSCHHHHHHHHHHHTTSGGG------------GGEEEECCCTTTCC----
T ss_pred CCCCEEEeCCCCCHHHHHHHhCCC-eEEEEECCHHHHHHHHHHhhccCCC------------cceEEEECchhcCC----
Confidence 445999999999999999888766 8999999999999999988654322 35788888887643
Q ss_pred CCCCCCEEEEcccccCCC--ChHHHHHHHHHHhccCCCCccc
Q 038343 102 SAFVPEIILGADILYDRS--CFPDLVRILAILLNRRKSVSSS 141 (191)
Q Consensus 102 ~~~~fDvIi~~d~ly~~~--~~~~ll~~l~~ll~~~g~~~~~ 141 (191)
...+||+|++..++++.. +...+++.+.++|+|+|....+
T Consensus 129 ~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 170 (235)
T 3lcc_A 129 PTELFDLIFDYVFFCAIEPEMRPAWAKSMYELLKPDGELITL 170 (235)
T ss_dssp CSSCEEEEEEESSTTTSCGGGHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCCCeeEEEEChhhhcCCHHHHHHHHHHHHHHCCCCcEEEEE
Confidence 234899999999999877 8899999999999999875543
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.54 E-value=2.2e-14 Score=108.23 Aligned_cols=106 Identities=14% Similarity=0.065 Sum_probs=88.1
Q ss_pred CCCCcEEEeCCCccHHHHHHHhcC--CCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCc
Q 038343 21 FSNKSCFEVGSGVGLVGICLAHVK--ASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASE 98 (191)
Q Consensus 21 ~~~~~VLElG~GtG~~~~~la~~g--~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~ 98 (191)
.++.+|||+|||+|..+..+++.+ ..+|+++|+++.+++.+++++..++.. ++.+...|+.+..
T Consensus 36 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-------------~~~~~~~d~~~~~- 101 (219)
T 3dh0_A 36 KEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLK-------------NVEVLKSEENKIP- 101 (219)
T ss_dssp CTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCT-------------TEEEEECBTTBCS-
T ss_pred CCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCC-------------cEEEEecccccCC-
Confidence 357799999999999998887764 249999999999999999999887643 4777777775432
Q ss_pred CCCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCcccc
Q 038343 99 SGLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVSSSR 142 (191)
Q Consensus 99 ~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~~~~ 142 (191)
+.+++||+|+++.++++..+...+++.+.++|+|+|......
T Consensus 102 --~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 143 (219)
T 3dh0_A 102 --LPDNTVDFIFMAFTFHELSEPLKFLEELKRVAKPFAYLAIID 143 (219)
T ss_dssp --SCSSCEEEEEEESCGGGCSSHHHHHHHHHHHEEEEEEEEEEE
T ss_pred --CCCCCeeEEEeehhhhhcCCHHHHHHHHHHHhCCCeEEEEEE
Confidence 345689999999999999999999999999999998665443
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.53 E-value=1.2e-13 Score=105.02 Aligned_cols=103 Identities=22% Similarity=0.222 Sum_probs=78.6
Q ss_pred CCCCcEEEeCCC-ccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcC
Q 038343 21 FSNKSCFEVGSG-VGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASES 99 (191)
Q Consensus 21 ~~~~~VLElG~G-tG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~ 99 (191)
.++.+|||+||| +|..++.+++....+|+++|+++.+++.+++|+..++. ++.+...|+....
T Consensus 54 ~~~~~vLDlG~G~~G~~~~~la~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--------------~v~~~~~d~~~~~-- 117 (230)
T 3evz_A 54 RGGEVALEIGTGHTAMMALMAEKFFNCKVTATEVDEEFFEYARRNIERNNS--------------NVRLVKSNGGIIK-- 117 (230)
T ss_dssp CSSCEEEEECCTTTCHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHTTC--------------CCEEEECSSCSST--
T ss_pred CCCCEEEEcCCCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHhCC--------------CcEEEeCCchhhh--
Confidence 367899999999 99999988887334999999999999999999998874 3667777764322
Q ss_pred CCCCCCCCEEEEcccccCCCC-------------------hHHHHHHHHHHhccCCCCc
Q 038343 100 GLSAFVPEIILGADILYDRSC-------------------FPDLVRILAILLNRRKSVS 139 (191)
Q Consensus 100 ~~~~~~fDvIi~~d~ly~~~~-------------------~~~ll~~l~~ll~~~g~~~ 139 (191)
.+.+++||+|+++.+++.... ...+++.+.++|+|+|...
T Consensus 118 ~~~~~~fD~I~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~ 176 (230)
T 3evz_A 118 GVVEGTFDVIFSAPPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVA 176 (230)
T ss_dssp TTCCSCEEEEEECCCCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEE
T ss_pred hcccCceeEEEECCCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEE
Confidence 123468999998766544322 3788999999999997544
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A | Back alignment and structure |
|---|
Probab=99.53 E-value=7.3e-14 Score=108.04 Aligned_cols=105 Identities=14% Similarity=0.103 Sum_probs=86.2
Q ss_pred CCCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCc
Q 038343 19 EIFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASE 98 (191)
Q Consensus 19 ~~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~ 98 (191)
...++.+|||+|||+|..+..+++.+. +|+++|+++.+++.+++++ .... .++.+...|+.+..
T Consensus 36 ~~~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~-~~~~-------------~~~~~~~~d~~~~~- 99 (263)
T 2yqz_A 36 PKGEEPVFLELGVGTGRIALPLIARGY-RYIALDADAAMLEVFRQKI-AGVD-------------RKVQVVQADARAIP- 99 (263)
T ss_dssp CSSSCCEEEEETCTTSTTHHHHHTTTC-EEEEEESCHHHHHHHHHHT-TTSC-------------TTEEEEESCTTSCC-
T ss_pred CCCCCCEEEEeCCcCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHh-hccC-------------CceEEEEcccccCC-
Confidence 344678999999999999998888875 8999999999999999876 2211 35777888876432
Q ss_pred CCCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCccc
Q 038343 99 SGLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVSSS 141 (191)
Q Consensus 99 ~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~~~ 141 (191)
+.+++||+|++..++++..+...+++.+.++|+|||.....
T Consensus 100 --~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~ 140 (263)
T 2yqz_A 100 --LPDESVHGVIVVHLWHLVPDWPKVLAEAIRVLKPGGALLEG 140 (263)
T ss_dssp --SCTTCEEEEEEESCGGGCTTHHHHHHHHHHHEEEEEEEEEE
T ss_pred --CCCCCeeEEEECCchhhcCCHHHHHHHHHHHCCCCcEEEEE
Confidence 34568999999999999999999999999999999865544
|
| >4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} | Back alignment and structure |
|---|
Probab=99.53 E-value=1.1e-14 Score=113.32 Aligned_cols=106 Identities=13% Similarity=0.135 Sum_probs=82.4
Q ss_pred HHHHHhhCCCCCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEE
Q 038343 10 LSEFILSFPEIFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCV 89 (191)
Q Consensus 10 L~~~l~~~~~~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~ 89 (191)
|.++|..... .+.+|||||||+|..+..++..+. +|+++|+++.|++.++++ .++.+.
T Consensus 29 l~~~l~~~~~--~~~~vLDvGcGtG~~~~~l~~~~~-~v~gvD~s~~ml~~a~~~-------------------~~v~~~ 86 (257)
T 4hg2_A 29 LFRWLGEVAP--ARGDALDCGCGSGQASLGLAEFFE-RVHAVDPGEAQIRQALRH-------------------PRVTYA 86 (257)
T ss_dssp HHHHHHHHSS--CSSEEEEESCTTTTTHHHHHTTCS-EEEEEESCHHHHHTCCCC-------------------TTEEEE
T ss_pred HHHHHHHhcC--CCCCEEEEcCCCCHHHHHHHHhCC-EEEEEeCcHHhhhhhhhc-------------------CCceee
Confidence 4556554332 345899999999999999999876 899999999998765421 347777
Q ss_pred eecCCCCCcCCCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCccc
Q 038343 90 HLPWESASESGLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVSSS 141 (191)
Q Consensus 90 ~ldw~~~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~~~ 141 (191)
..+.++.. +++++||+|+++.++++. +.+.+++.++++|||||....+
T Consensus 87 ~~~~e~~~---~~~~sfD~v~~~~~~h~~-~~~~~~~e~~rvLkpgG~l~~~ 134 (257)
T 4hg2_A 87 VAPAEDTG---LPPASVDVAIAAQAMHWF-DLDRFWAELRRVARPGAVFAAV 134 (257)
T ss_dssp ECCTTCCC---CCSSCEEEEEECSCCTTC-CHHHHHHHHHHHEEEEEEEEEE
T ss_pred hhhhhhhc---ccCCcccEEEEeeehhHh-hHHHHHHHHHHHcCCCCEEEEE
Confidence 77765442 566799999999999876 5889999999999999865543
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=2e-14 Score=113.24 Aligned_cols=109 Identities=10% Similarity=0.026 Sum_probs=83.1
Q ss_pred CCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCC
Q 038343 21 FSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESG 100 (191)
Q Consensus 21 ~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~ 100 (191)
.++.+|||+|||+|..+..++..|. +|+++|+++.+++.+++++......... .++.+...++.......
T Consensus 56 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~---------~~~~~~~~d~~~~~~~~ 125 (293)
T 3thr_A 56 HGCHRVLDVACGTGVDSIMLVEEGF-SVTSVDASDKMLKYALKERWNRRKEPAF---------DKWVIEEANWLTLDKDV 125 (293)
T ss_dssp TTCCEEEETTCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTTSHHH---------HTCEEEECCGGGHHHHS
T ss_pred cCCCEEEEecCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHhhhhccccccc---------ceeeEeecChhhCcccc
Confidence 3567999999999999999999887 9999999999999999887544322100 23455565554321111
Q ss_pred CCCCCCCEEEEc-ccccCCCC-------hHHHHHHHHHHhccCCCCc
Q 038343 101 LSAFVPEIILGA-DILYDRSC-------FPDLVRILAILLNRRKSVS 139 (191)
Q Consensus 101 ~~~~~fDvIi~~-d~ly~~~~-------~~~ll~~l~~ll~~~g~~~ 139 (191)
+.+++||+|++. .++++..+ ...+++.+.++|+|||...
T Consensus 126 ~~~~~fD~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~ 172 (293)
T 3thr_A 126 PAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLV 172 (293)
T ss_dssp CCTTCEEEEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEE
T ss_pred ccCCCeEEEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEE
Confidence 245689999998 89999888 9999999999999997543
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 | Back alignment and structure |
|---|
Probab=99.52 E-value=5.7e-14 Score=112.95 Aligned_cols=105 Identities=20% Similarity=0.235 Sum_probs=85.4
Q ss_pred CCCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCc
Q 038343 19 EIFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASE 98 (191)
Q Consensus 19 ~~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~ 98 (191)
...++++|||+|||+|.+++.+++.|+.+|+++|.+ .+++.++++++.|+.. .++.+...+..+..
T Consensus 35 ~~~~~~~VLDiGcGtG~ls~~la~~g~~~v~~vD~s-~~~~~a~~~~~~~~~~------------~~i~~~~~d~~~~~- 100 (328)
T 1g6q_1 35 DLFKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMS-SIIEMAKELVELNGFS------------DKITLLRGKLEDVH- 100 (328)
T ss_dssp HHHTTCEEEEETCTTSHHHHHHHHTCCSEEEEEESS-THHHHHHHHHHHTTCT------------TTEEEEESCTTTSC-
T ss_pred hhcCCCEEEEecCccHHHHHHHHHCCCCEEEEEChH-HHHHHHHHHHHHcCCC------------CCEEEEECchhhcc-
Confidence 345678999999999999999999887799999999 5999999999988865 45788888776542
Q ss_pred CCCCCCCCCEEEEccc---ccCCCChHHHHHHHHHHhccCCCCc
Q 038343 99 SGLSAFVPEIILGADI---LYDRSCFPDLVRILAILLNRRKSVS 139 (191)
Q Consensus 99 ~~~~~~~fDvIi~~d~---ly~~~~~~~ll~~l~~ll~~~g~~~ 139 (191)
++.++||+|++..+ +.+....+.++..+.++|+|+|...
T Consensus 101 --~~~~~~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 142 (328)
T 1g6q_1 101 --LPFPKVDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIF 142 (328)
T ss_dssp --CSSSCEEEEEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEE
T ss_pred --CCCCcccEEEEeCchhhcccHHHHHHHHHHHHhhcCCCeEEE
Confidence 33468999998744 4456778899999999999998643
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 | Back alignment and structure |
|---|
Probab=99.52 E-value=1.6e-13 Score=101.06 Aligned_cols=101 Identities=18% Similarity=0.252 Sum_probs=81.9
Q ss_pred CCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCC
Q 038343 21 FSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESG 100 (191)
Q Consensus 21 ~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~ 100 (191)
.++.+|||+|||+|..+..+++.+ .+|+++|+++.+++.+++++..++... .++.+...|+.+..
T Consensus 51 ~~~~~vLdiG~G~G~~~~~~~~~~-~~v~~~D~~~~~~~~a~~~~~~~~~~~-----------~~~~~~~~d~~~~~--- 115 (194)
T 1dus_A 51 DKDDDILDLGCGYGVIGIALADEV-KSTTMADINRRAIKLAKENIKLNNLDN-----------YDIRVVHSDLYENV--- 115 (194)
T ss_dssp CTTCEEEEETCTTSHHHHHHGGGS-SEEEEEESCHHHHHHHHHHHHHTTCTT-----------SCEEEEECSTTTTC---
T ss_pred CCCCeEEEeCCCCCHHHHHHHHcC-CeEEEEECCHHHHHHHHHHHHHcCCCc-----------cceEEEECchhccc---
Confidence 367899999999999999888884 499999999999999999998876431 13778888876542
Q ss_pred CCCCCCCEEEEcccccC-CCChHHHHHHHHHHhccCCC
Q 038343 101 LSAFVPEIILGADILYD-RSCFPDLVRILAILLNRRKS 137 (191)
Q Consensus 101 ~~~~~fDvIi~~d~ly~-~~~~~~ll~~l~~ll~~~g~ 137 (191)
..++||+|++..++++ ......+++.+.++|+|+|.
T Consensus 116 -~~~~~D~v~~~~~~~~~~~~~~~~l~~~~~~L~~gG~ 152 (194)
T 1dus_A 116 -KDRKYNKIITNPPIRAGKEVLHRIIEEGKELLKDNGE 152 (194)
T ss_dssp -TTSCEEEEEECCCSTTCHHHHHHHHHHHHHHEEEEEE
T ss_pred -ccCCceEEEECCCcccchhHHHHHHHHHHHHcCCCCE
Confidence 2458999999877665 35678899999999999974
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=99.52 E-value=3.5e-13 Score=101.29 Aligned_cols=97 Identities=15% Similarity=0.117 Sum_probs=77.4
Q ss_pred CCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcC
Q 038343 20 IFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASES 99 (191)
Q Consensus 20 ~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~ 99 (191)
..++.+|||+|||+|..++.+++.+. +|+++|+++.+++.+++|++.++.. .++.+...|..+...
T Consensus 53 ~~~~~~vLDlGcG~G~~~~~la~~~~-~v~~vD~s~~~~~~a~~~~~~~g~~------------~~v~~~~~d~~~~~~- 118 (204)
T 3njr_A 53 PRRGELLWDIGGGSGSVSVEWCLAGG-RAITIEPRADRIENIQKNIDTYGLS------------PRMRAVQGTAPAALA- 118 (204)
T ss_dssp CCTTCEEEEETCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCT------------TTEEEEESCTTGGGT-
T ss_pred CCCCCEEEEecCCCCHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCC------------CCEEEEeCchhhhcc-
Confidence 34678999999999999998888854 9999999999999999999988754 357777777654211
Q ss_pred CCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCC
Q 038343 100 GLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKS 137 (191)
Q Consensus 100 ~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~ 137 (191)
...+||+|++...+ ..+ +++.+.++|+|+|.
T Consensus 119 --~~~~~D~v~~~~~~----~~~-~l~~~~~~LkpgG~ 149 (204)
T 3njr_A 119 --DLPLPEAVFIGGGG----SQA-LYDRLWEWLAPGTR 149 (204)
T ss_dssp --TSCCCSEEEECSCC----CHH-HHHHHHHHSCTTCE
T ss_pred --cCCCCCEEEECCcc----cHH-HHHHHHHhcCCCcE
Confidence 12479999986533 456 99999999999974
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=99.52 E-value=3.2e-14 Score=108.82 Aligned_cols=104 Identities=15% Similarity=0.011 Sum_probs=83.9
Q ss_pred CCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcC
Q 038343 20 IFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASES 99 (191)
Q Consensus 20 ~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~ 99 (191)
..++.+|||+|||+|..+..+++.+..+|+++|+++.+++.++++... .++.+...|..+..
T Consensus 41 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~----------------~~~~~~~~d~~~~~-- 102 (243)
T 3bkw_A 41 EVGGLRIVDLGCGFGWFCRWAHEHGASYVLGLDLSEKMLARARAAGPD----------------TGITYERADLDKLH-- 102 (243)
T ss_dssp CCTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHTSCS----------------SSEEEEECCGGGCC--
T ss_pred ccCCCEEEEEcCcCCHHHHHHHHCCCCeEEEEcCCHHHHHHHHHhccc----------------CCceEEEcChhhcc--
Confidence 346789999999999999988888766899999999999988865432 13666666665432
Q ss_pred CCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCcccc
Q 038343 100 GLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVSSSR 142 (191)
Q Consensus 100 ~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~~~~ 142 (191)
+.+++||+|++..++++..+...+++.+.++|+|+|......
T Consensus 103 -~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~ 144 (243)
T 3bkw_A 103 -LPQDSFDLAYSSLALHYVEDVARLFRTVHQALSPGGHFVFST 144 (243)
T ss_dssp -CCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred -CCCCCceEEEEeccccccchHHHHHHHHHHhcCcCcEEEEEe
Confidence 345689999999999999999999999999999998655433
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.51 E-value=8.3e-14 Score=107.28 Aligned_cols=103 Identities=14% Similarity=0.078 Sum_probs=82.6
Q ss_pred CCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcC
Q 038343 20 IFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASES 99 (191)
Q Consensus 20 ~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~ 99 (191)
..++.+|||+|||+|..+..++..+..+|+++|+++.+++.+++++..+ .++.+...|+.+..
T Consensus 91 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~---------------~~~~~~~~d~~~~~-- 153 (254)
T 1xtp_A 91 GHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGM---------------PVGKFILASMETAT-- 153 (254)
T ss_dssp TCCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTS---------------SEEEEEESCGGGCC--
T ss_pred ccCCCEEEEECCCcCHHHHHHHHhhcCEEEEEeCCHHHHHHHHHHhccC---------------CceEEEEccHHHCC--
Confidence 3467899999999999999887776668999999999999998876433 24677777765432
Q ss_pred CCCCCCCCEEEEcccccCC--CChHHHHHHHHHHhccCCCCcc
Q 038343 100 GLSAFVPEIILGADILYDR--SCFPDLVRILAILLNRRKSVSS 140 (191)
Q Consensus 100 ~~~~~~fDvIi~~d~ly~~--~~~~~ll~~l~~ll~~~g~~~~ 140 (191)
+.+++||+|++..++++. .+...+++.+.++|+|+|....
T Consensus 154 -~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i 195 (254)
T 1xtp_A 154 -LPPNTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFF 195 (254)
T ss_dssp -CCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred -CCCCCeEEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEE
Confidence 345689999999999988 4588999999999999975443
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=99.51 E-value=5.4e-14 Score=107.59 Aligned_cols=102 Identities=13% Similarity=0.019 Sum_probs=84.8
Q ss_pred CCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCCC
Q 038343 22 SNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESGL 101 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~~ 101 (191)
++.+|||+|||+|..+..+++.+. +|+++|+++.+++.++++.. . .++.+...|..+.. +
T Consensus 53 ~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~--~--------------~~~~~~~~d~~~~~---~ 112 (242)
T 3l8d_A 53 KEAEVLDVGCGDGYGTYKLSRTGY-KAVGVDISEVMIQKGKERGE--G--------------PDLSFIKGDLSSLP---F 112 (242)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHTTTC--B--------------TTEEEEECBTTBCS---S
T ss_pred CCCeEEEEcCCCCHHHHHHHHcCC-eEEEEECCHHHHHHHHhhcc--c--------------CCceEEEcchhcCC---C
Confidence 677999999999999999888876 89999999999998876531 1 35777787776542 3
Q ss_pred CCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCccccc
Q 038343 102 SAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVSSSRK 143 (191)
Q Consensus 102 ~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~~~~~ 143 (191)
.+++||+|++..++++..+...+++.+.++|+|+|.......
T Consensus 113 ~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 154 (242)
T 3l8d_A 113 ENEQFEAIMAINSLEWTEEPLRALNEIKRVLKSDGYACIAIL 154 (242)
T ss_dssp CTTCEEEEEEESCTTSSSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCCCccEEEEcChHhhccCHHHHHHHHHHHhCCCeEEEEEEc
Confidence 457899999999999999999999999999999986655443
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.51 E-value=1.3e-13 Score=109.14 Aligned_cols=106 Identities=12% Similarity=0.030 Sum_probs=85.5
Q ss_pred CCCcEEEeCCCccHHHHHHHh--cCCCeEEEEcCChHHHHHHHHHHHHh-cCCCCcccccccCCCCeeEEEeecCCCCCc
Q 038343 22 SNKSCFEVGSGVGLVGICLAH--VKASKVTLTDGDHLTLANMRSNLELN-QLSTDTSLLESYEDPNVVQCVHLPWESASE 98 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~--~g~~~v~~tD~~~~~l~~~~~n~~~n-~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~ 98 (191)
++.+|||+|||+|..+..+++ .+..+|+++|+++.+++.+++++..+ +.. .++.+...|+.+...
T Consensus 36 ~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~------------~~v~~~~~d~~~~~~ 103 (299)
T 3g5t_A 36 ERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTY------------KNVSFKISSSDDFKF 103 (299)
T ss_dssp CCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CC------------TTEEEEECCTTCCGG
T ss_pred CCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCC------------CceEEEEcCHHhCCc
Confidence 678999999999999998884 23459999999999999999998876 211 468888888876431
Q ss_pred C---CCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCcc
Q 038343 99 S---GLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVSS 140 (191)
Q Consensus 99 ~---~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~~ 140 (191)
. .+..++||+|+++.++++. +...+++.+.++|+|||....
T Consensus 104 ~~~~~~~~~~fD~V~~~~~l~~~-~~~~~l~~~~~~LkpgG~l~i 147 (299)
T 3g5t_A 104 LGADSVDKQKIDMITAVECAHWF-DFEKFQRSAYANLRKDGTIAI 147 (299)
T ss_dssp GCTTTTTSSCEEEEEEESCGGGS-CHHHHHHHHHHHEEEEEEEEE
T ss_pred cccccccCCCeeEEeHhhHHHHh-CHHHHHHHHHHhcCCCcEEEE
Confidence 1 1123689999999999999 999999999999999986543
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=6.2e-14 Score=114.89 Aligned_cols=118 Identities=23% Similarity=0.244 Sum_probs=92.3
Q ss_pred ccHHHHHHHHhhCC--CCCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCC
Q 038343 5 PSSLLLSEFILSFP--EIFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYED 82 (191)
Q Consensus 5 ~~a~~L~~~l~~~~--~~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~ 82 (191)
+.+..+.+.+.... ...++.+|||+|||+|..++.+++.+. +|+++|+++.+++.+++|+..|+..
T Consensus 214 ~~t~~ll~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~la~~g~-~V~gvDis~~al~~A~~n~~~~~~~----------- 281 (381)
T 3dmg_A 214 PASLLLLEALQERLGPEGVRGRQVLDLGAGYGALTLPLARMGA-EVVGVEDDLASVLSLQKGLEANALK----------- 281 (381)
T ss_dssp HHHHHHHHHHHHHHCTTTTTTCEEEEETCTTSTTHHHHHHTTC-EEEEEESBHHHHHHHHHHHHHTTCC-----------
T ss_pred HHHHHHHHHHHHhhcccCCCCCEEEEEeeeCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHcCCC-----------
Confidence 45566666665432 234678999999999999999998876 9999999999999999999988743
Q ss_pred CCeeEEEeecCCCCCcCCCCCCCCCEEEEcccccC-----CCChHHHHHHHHHHhccCCCCcc
Q 038343 83 PNVVQCVHLPWESASESGLSAFVPEIILGADILYD-----RSCFPDLVRILAILLNRRKSVSS 140 (191)
Q Consensus 83 ~~~i~~~~ldw~~~~~~~~~~~~fDvIi~~d~ly~-----~~~~~~ll~~l~~ll~~~g~~~~ 140 (191)
+.+...|+.+... ..++||+|+++.++++ ......+++.+.++|+|+|....
T Consensus 282 ---v~~~~~D~~~~~~---~~~~fD~Ii~npp~~~~~~~~~~~~~~~l~~~~~~LkpGG~l~i 338 (381)
T 3dmg_A 282 ---AQALHSDVDEALT---EEARFDIIVTNPPFHVGGAVILDVAQAFVNVAAARLRPGGVFFL 338 (381)
T ss_dssp ---CEEEECSTTTTSC---TTCCEEEEEECCCCCTTCSSCCHHHHHHHHHHHHHEEEEEEEEE
T ss_pred ---eEEEEcchhhccc---cCCCeEEEEECCchhhcccccHHHHHHHHHHHHHhcCcCcEEEE
Confidence 5667777655432 2368999999888876 45567899999999999985443
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.50 E-value=3.8e-14 Score=108.73 Aligned_cols=103 Identities=12% Similarity=0.055 Sum_probs=82.9
Q ss_pred CCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCCC
Q 038343 22 SNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESGL 101 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~~ 101 (191)
++.+|||+|||+|..+..+++.+..+|+++|+++.+++.+++++..++. .++.+...|+.+.. .
T Consensus 79 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-------------~~~~~~~~d~~~~~---~ 142 (241)
T 2ex4_A 79 GTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGK-------------RVRNYFCCGLQDFT---P 142 (241)
T ss_dssp CCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGG-------------GEEEEEECCGGGCC---C
T ss_pred CCCEEEEECCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHhhhcCC-------------ceEEEEEcChhhcC---C
Confidence 5789999999999999988877656999999999999999988766531 24667777765432 2
Q ss_pred CCCCCCEEEEcccccCCCC--hHHHHHHHHHHhccCCCCcc
Q 038343 102 SAFVPEIILGADILYDRSC--FPDLVRILAILLNRRKSVSS 140 (191)
Q Consensus 102 ~~~~fDvIi~~d~ly~~~~--~~~ll~~l~~ll~~~g~~~~ 140 (191)
.+++||+|++..++++..+ ...+++.+.++|+|+|....
T Consensus 143 ~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i 183 (241)
T 2ex4_A 143 EPDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVI 183 (241)
T ss_dssp CSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred CCCCEEEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEE
Confidence 3458999999999998877 45899999999999975443
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.50 E-value=4.3e-14 Score=105.84 Aligned_cols=107 Identities=8% Similarity=0.020 Sum_probs=83.5
Q ss_pred CCCCcEEEeCCCccHHH-HHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcC
Q 038343 21 FSNKSCFEVGSGVGLVG-ICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASES 99 (191)
Q Consensus 21 ~~~~~VLElG~GtG~~~-~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~ 99 (191)
.++.+|||+|||+|..+ ..++..+. +|+++|+++.+++.+++++..++. ++.+...|..+..
T Consensus 22 ~~~~~vLDiGcG~G~~~~~~~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~--------------~~~~~~~d~~~~~-- 84 (209)
T 2p8j_A 22 NLDKTVLDCGAGGDLPPLSIFVEDGY-KTYGIEISDLQLKKAENFSRENNF--------------KLNISKGDIRKLP-- 84 (209)
T ss_dssp SSCSEEEEESCCSSSCTHHHHHHTTC-EEEEEECCHHHHHHHHHHHHHHTC--------------CCCEEECCTTSCC--
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHhcCC--------------ceEEEECchhhCC--
Confidence 35779999999999763 45566665 899999999999999998877652 3556666665432
Q ss_pred CCCCCCCCEEEEcccccCC--CChHHHHHHHHHHhccCCCCccccccC
Q 038343 100 GLSAFVPEIILGADILYDR--SCFPDLVRILAILLNRRKSVSSSRKES 145 (191)
Q Consensus 100 ~~~~~~fDvIi~~d~ly~~--~~~~~ll~~l~~ll~~~g~~~~~~~~~ 145 (191)
+++++||+|++..++++. .+...+++.+.++|+|+|........+
T Consensus 85 -~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 131 (209)
T 2p8j_A 85 -FKDESMSFVYSYGTIFHMRKNDVKEAIDEIKRVLKPGGLACINFLTT 131 (209)
T ss_dssp -SCTTCEEEEEECSCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEET
T ss_pred -CCCCceeEEEEcChHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEecc
Confidence 345689999999999987 678899999999999998766544443
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=99.50 E-value=5.5e-13 Score=100.59 Aligned_cols=94 Identities=14% Similarity=0.037 Sum_probs=78.0
Q ss_pred CCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCCC
Q 038343 22 SNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESGL 101 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~~ 101 (191)
++.+|||+|||+|..+..+++.+. +|+++|+++.+++.+++++. . ++.+...|..+.. .
T Consensus 45 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~-~----------------~~~~~~~d~~~~~---~ 103 (220)
T 3hnr_A 45 SFGNVLEFGVGTGNLTNKLLLAGR-TVYGIEPSREMRMIAKEKLP-K----------------EFSITEGDFLSFE---V 103 (220)
T ss_dssp CCSEEEEECCTTSHHHHHHHHTTC-EEEEECSCHHHHHHHHHHSC-T----------------TCCEESCCSSSCC---C
T ss_pred CCCeEEEeCCCCCHHHHHHHhCCC-eEEEEeCCHHHHHHHHHhCC-C----------------ceEEEeCChhhcC---C
Confidence 567999999999999998888876 99999999999999987654 1 2556666665542 2
Q ss_pred CCCCCCEEEEcccccCCCChHH--HHHHHHHHhccCCC
Q 038343 102 SAFVPEIILGADILYDRSCFPD--LVRILAILLNRRKS 137 (191)
Q Consensus 102 ~~~~fDvIi~~d~ly~~~~~~~--ll~~l~~ll~~~g~ 137 (191)
. ++||+|++..++++..+.+. +++.+.++|+|||.
T Consensus 104 ~-~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~ 140 (220)
T 3hnr_A 104 P-TSIDTIVSTYAFHHLTDDEKNVAIAKYSQLLNKGGK 140 (220)
T ss_dssp C-SCCSEEEEESCGGGSCHHHHHHHHHHHHHHSCTTCE
T ss_pred C-CCeEEEEECcchhcCChHHHHHHHHHHHHhcCCCCE
Confidence 2 68999999999999988877 99999999999974
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.50 E-value=1e-13 Score=105.31 Aligned_cols=108 Identities=12% Similarity=0.046 Sum_probs=87.1
Q ss_pred CCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCCC
Q 038343 22 SNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESGL 101 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~~ 101 (191)
++.+|||+|||+|..+..+++.+. +|+++|+++.+++.+++++..++.... ...++.+...+..... +
T Consensus 30 ~~~~vLdiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~--------~~~~~~~~~~d~~~~~---~ 97 (235)
T 3sm3_A 30 EDDEILDIGCGSGKISLELASKGY-SVTGIDINSEAIRLAETAARSPGLNQK--------TGGKAEFKVENASSLS---F 97 (235)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTTCCSCCSS--------SSCEEEEEECCTTSCC---S
T ss_pred CCCeEEEECCCCCHHHHHHHhCCC-eEEEEECCHHHHHHHHHHHHhcCCccc--------cCcceEEEEecccccC---C
Confidence 677999999999999998888876 999999999999999988776654211 1135677777765432 3
Q ss_pred CCCCCCEEEEcccccCCCChH---HHHHHHHHHhccCCCCccc
Q 038343 102 SAFVPEIILGADILYDRSCFP---DLVRILAILLNRRKSVSSS 141 (191)
Q Consensus 102 ~~~~fDvIi~~d~ly~~~~~~---~ll~~l~~ll~~~g~~~~~ 141 (191)
..++||+|++..++++..+.+ .+++.+.++|+|+|.....
T Consensus 98 ~~~~~D~v~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 140 (235)
T 3sm3_A 98 HDSSFDFAVMQAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLV 140 (235)
T ss_dssp CTTCEEEEEEESCGGGCCCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCCceeEEEEcchhhcCCCHHHHHHHHHHHHHHcCCCeEEEEE
Confidence 457899999999999998877 8999999999999865543
|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.50 E-value=2.7e-14 Score=105.05 Aligned_cols=120 Identities=13% Similarity=0.145 Sum_probs=87.6
Q ss_pred HHHHHHHHhhCC-CCCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCe
Q 038343 7 SLLLSEFILSFP-EIFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNV 85 (191)
Q Consensus 7 a~~L~~~l~~~~-~~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~ 85 (191)
...+.+.+.... ...++.+|||+|||+|..++.+++.+..+|+++|+++.+++.+++|+..++.. .+
T Consensus 28 ~~~~~~~~~~~l~~~~~~~~vLD~GcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~------------~~ 95 (187)
T 2fhp_A 28 TDKVKESIFNMIGPYFDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEP------------EK 95 (187)
T ss_dssp CHHHHHHHHHHHCSCCSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCG------------GG
T ss_pred HHHHHHHHHHHHHhhcCCCCEEEeCCccCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCC------------cc
Confidence 344444443322 23467899999999999999888777679999999999999999999988753 35
Q ss_pred eEEEeecCCCCCcC-CCCCCCCCEEEEcccccCCCChHHHHHHH--HHHhccCCCCc
Q 038343 86 VQCVHLPWESASES-GLSAFVPEIILGADILYDRSCFPDLVRIL--AILLNRRKSVS 139 (191)
Q Consensus 86 i~~~~ldw~~~~~~-~~~~~~fDvIi~~d~ly~~~~~~~ll~~l--~~ll~~~g~~~ 139 (191)
+.+...|+.+.... .....+||+|++..+ |.....+..++.+ .++|+|+|...
T Consensus 96 ~~~~~~d~~~~~~~~~~~~~~fD~i~~~~~-~~~~~~~~~~~~l~~~~~L~~gG~l~ 151 (187)
T 2fhp_A 96 FEVRKMDANRALEQFYEEKLQFDLVLLDPP-YAKQEIVSQLEKMLERQLLTNEAVIV 151 (187)
T ss_dssp EEEEESCHHHHHHHHHHTTCCEEEEEECCC-GGGCCHHHHHHHHHHTTCEEEEEEEE
T ss_pred eEEEECcHHHHHHHHHhcCCCCCEEEECCC-CCchhHHHHHHHHHHhcccCCCCEEE
Confidence 77777776542110 011457999998766 6567788888888 77899997543
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.6e-13 Score=106.81 Aligned_cols=109 Identities=18% Similarity=0.204 Sum_probs=83.9
Q ss_pred CCCCcEEEeCCCccHHHHHHHhcC-CCeEEEEcCChHHHHHHHHHHHH---hcCCCCcccccccCCCCeeEEEeecCCCC
Q 038343 21 FSNKSCFEVGSGVGLVGICLAHVK-ASKVTLTDGDHLTLANMRSNLEL---NQLSTDTSLLESYEDPNVVQCVHLPWESA 96 (191)
Q Consensus 21 ~~~~~VLElG~GtG~~~~~la~~g-~~~v~~tD~~~~~l~~~~~n~~~---n~~~~~~~~~~~~~~~~~i~~~~ldw~~~ 96 (191)
.++.+|||+|||+|.+++.+++.. ..+|+++|+++.+++.+++|+.. +++. .++.+...|+.+.
T Consensus 35 ~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~------------~~v~~~~~D~~~~ 102 (260)
T 2ozv_A 35 DRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFS------------ARIEVLEADVTLR 102 (260)
T ss_dssp CSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTTG------------GGEEEEECCTTCC
T ss_pred cCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCCc------------ceEEEEeCCHHHH
Confidence 356799999999999999888875 34999999999999999999987 6644 3578888888765
Q ss_pred Cc----CCCCCCCCCEEEEcccccCC------------------CChHHHHHHHHHHhccCCCCccc
Q 038343 97 SE----SGLSAFVPEIILGADILYDR------------------SCFPDLVRILAILLNRRKSVSSS 141 (191)
Q Consensus 97 ~~----~~~~~~~fDvIi~~d~ly~~------------------~~~~~ll~~l~~ll~~~g~~~~~ 141 (191)
.. ..+...+||+|+++..++.. ...+.+++.+.++|+|+|....+
T Consensus 103 ~~~~~~~~~~~~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 169 (260)
T 2ozv_A 103 AKARVEAGLPDEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLI 169 (260)
T ss_dssp HHHHHHTTCCTTCEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEE
T ss_pred hhhhhhhccCCCCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEE
Confidence 21 12345689999997655533 24788999999999999876554
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=99.50 E-value=8.7e-14 Score=109.35 Aligned_cols=100 Identities=15% Similarity=0.119 Sum_probs=84.1
Q ss_pred CCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCCC
Q 038343 22 SNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESGL 101 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~~ 101 (191)
++.+|||+|||+|..+..+++.|. +|+++|+++.+++.+++++..++. ++.+...|..+...
T Consensus 120 ~~~~vLD~GcG~G~~~~~l~~~g~-~v~~vD~s~~~~~~a~~~~~~~~~--------------~~~~~~~d~~~~~~--- 181 (286)
T 3m70_A 120 SPCKVLDLGCGQGRNSLYLSLLGY-DVTSWDHNENSIAFLNETKEKENL--------------NISTALYDINAANI--- 181 (286)
T ss_dssp CSCEEEEESCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC--------------CEEEEECCGGGCCC---
T ss_pred CCCcEEEECCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHHcCC--------------ceEEEEeccccccc---
Confidence 677999999999999999999887 999999999999999999988763 36677777654331
Q ss_pred CCCCCCEEEEcccccCC--CChHHHHHHHHHHhccCCCCcc
Q 038343 102 SAFVPEIILGADILYDR--SCFPDLVRILAILLNRRKSVSS 140 (191)
Q Consensus 102 ~~~~fDvIi~~d~ly~~--~~~~~ll~~l~~ll~~~g~~~~ 140 (191)
.++||+|+++.++++. +....+++.+.++|+|||....
T Consensus 182 -~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i 221 (286)
T 3m70_A 182 -QENYDFIVSTVVFMFLNRERVPSIIKNMKEHTNVGGYNLI 221 (286)
T ss_dssp -CSCEEEEEECSSGGGSCGGGHHHHHHHHHHTEEEEEEEEE
T ss_pred -cCCccEEEEccchhhCCHHHHHHHHHHHHHhcCCCcEEEE
Confidence 4689999999999966 4566999999999999986443
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A | Back alignment and structure |
|---|
Probab=99.50 E-value=3.4e-14 Score=108.73 Aligned_cols=98 Identities=15% Similarity=0.093 Sum_probs=81.4
Q ss_pred CCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCC
Q 038343 21 FSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESG 100 (191)
Q Consensus 21 ~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~ 100 (191)
.++.+|||+|||+|..+..+++.+. +|+++|+++.+++.++++... ++.+...|..+.
T Consensus 41 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~~-----------------~v~~~~~d~~~~---- 98 (250)
T 2p7i_A 41 FRPGNLLELGSFKGDFTSRLQEHFN-DITCVEASEEAISHAQGRLKD-----------------GITYIHSRFEDA---- 98 (250)
T ss_dssp CCSSCEEEESCTTSHHHHHHTTTCS-CEEEEESCHHHHHHHHHHSCS-----------------CEEEEESCGGGC----
T ss_pred cCCCcEEEECCCCCHHHHHHHHhCC-cEEEEeCCHHHHHHHHHhhhC-----------------CeEEEEccHHHc----
Confidence 4677999999999999999998877 899999999999998876432 256666665543
Q ss_pred CCCCCCCEEEEcccccCCCChHHHHHHHH-HHhccCCCCcc
Q 038343 101 LSAFVPEIILGADILYDRSCFPDLVRILA-ILLNRRKSVSS 140 (191)
Q Consensus 101 ~~~~~fDvIi~~d~ly~~~~~~~ll~~l~-~ll~~~g~~~~ 140 (191)
..+++||+|++..++++..+...+++.+. ++|+|+|....
T Consensus 99 ~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~~LkpgG~l~i 139 (250)
T 2p7i_A 99 QLPRRYDNIVLTHVLEHIDDPVALLKRINDDWLAEGGRLFL 139 (250)
T ss_dssp CCSSCEEEEEEESCGGGCSSHHHHHHHHHHTTEEEEEEEEE
T ss_pred CcCCcccEEEEhhHHHhhcCHHHHHHHHHHHhcCCCCEEEE
Confidence 23468999999999999999999999999 99999986554
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=1.2e-14 Score=111.78 Aligned_cols=103 Identities=14% Similarity=0.106 Sum_probs=80.2
Q ss_pred CCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCCC
Q 038343 22 SNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESGL 101 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~~ 101 (191)
+|.+|||||||+|..+..+++.+..+|+++|+++.+++.++++....+ ..+.+...+|.+... .+
T Consensus 60 ~G~rVLdiG~G~G~~~~~~~~~~~~~v~~id~~~~~~~~a~~~~~~~~--------------~~~~~~~~~a~~~~~-~~ 124 (236)
T 3orh_A 60 KGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQT--------------HKVIPLKGLWEDVAP-TL 124 (236)
T ss_dssp TCEEEEEECCTTSHHHHHHTTSCEEEEEEEECCHHHHHHHHHHGGGCS--------------SEEEEEESCHHHHGG-GS
T ss_pred CCCeEEEECCCccHHHHHHHHhCCcEEEEEeCCHHHHHHHHHHHhhCC--------------CceEEEeehHHhhcc-cc
Confidence 677999999999999998888766699999999999999998876655 356777777754321 24
Q ss_pred CCCCCCEEEE-----cccccCCCChHHHHHHHHHHhccCCCCc
Q 038343 102 SAFVPEIILG-----ADILYDRSCFPDLVRILAILLNRRKSVS 139 (191)
Q Consensus 102 ~~~~fDvIi~-----~d~ly~~~~~~~ll~~l~~ll~~~g~~~ 139 (191)
.+++||.|+. ...+++..+.+.+++.+.++|||||...
T Consensus 125 ~~~~FD~i~~D~~~~~~~~~~~~~~~~~~~e~~rvLkPGG~l~ 167 (236)
T 3orh_A 125 PDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLT 167 (236)
T ss_dssp CTTCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEE
T ss_pred cccCCceEEEeeeecccchhhhcchhhhhhhhhheeCCCCEEE
Confidence 5568999874 3334455667889999999999998543
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=2.4e-13 Score=102.18 Aligned_cols=104 Identities=14% Similarity=0.011 Sum_probs=83.7
Q ss_pred CCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcC
Q 038343 20 IFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASES 99 (191)
Q Consensus 20 ~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~ 99 (191)
..++.+|||+|||+|..+..+++.+. +|+++|+++.+++.+++ ++. .++.+...|..+.
T Consensus 44 ~~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~~D~s~~~~~~a~~----~~~-------------~~~~~~~~d~~~~--- 102 (218)
T 3ou2_A 44 GNIRGDVLELASGTGYWTRHLSGLAD-RVTALDGSAEMIAEAGR----HGL-------------DNVEFRQQDLFDW--- 102 (218)
T ss_dssp TTSCSEEEEESCTTSHHHHHHHHHSS-EEEEEESCHHHHHHHGG----GCC-------------TTEEEEECCTTSC---
T ss_pred CCCCCeEEEECCCCCHHHHHHHhcCC-eEEEEeCCHHHHHHHHh----cCC-------------CCeEEEecccccC---
Confidence 34567999999999999998888876 99999999999998876 221 2477778777654
Q ss_pred CCCCCCCCEEEEcccccCCCCh--HHHHHHHHHHhccCCCCccccccC
Q 038343 100 GLSAFVPEIILGADILYDRSCF--PDLVRILAILLNRRKSVSSSRKES 145 (191)
Q Consensus 100 ~~~~~~fDvIi~~d~ly~~~~~--~~ll~~l~~ll~~~g~~~~~~~~~ 145 (191)
...++||+|+++.++++..+. ..+++.+.++|+|+|........+
T Consensus 103 -~~~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 149 (218)
T 3ou2_A 103 -TPDRQWDAVFFAHWLAHVPDDRFEAFWESVRSAVAPGGVVEFVDVTD 149 (218)
T ss_dssp -CCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECC
T ss_pred -CCCCceeEEEEechhhcCCHHHHHHHHHHHHHHcCCCeEEEEEeCCC
Confidence 345689999999999988874 899999999999998766554443
|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.49 E-value=2.9e-14 Score=106.88 Aligned_cols=105 Identities=13% Similarity=0.146 Sum_probs=79.5
Q ss_pred CCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCCC
Q 038343 22 SNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESGL 101 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~~ 101 (191)
++.+|||+|||+|..++.++..++.+|+++|+++.+++.+++|++.++... .++.+...|..+... ..
T Consensus 53 ~~~~vLDlGcGtG~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~-----------~~v~~~~~d~~~~~~-~~ 120 (201)
T 2ift_A 53 HQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSS-----------EQAEVINQSSLDFLK-QP 120 (201)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCT-----------TTEEEECSCHHHHTT-SC
T ss_pred CCCeEEEcCCccCHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHHhCCCc-----------cceEEEECCHHHHHH-hh
Confidence 577999999999999998777776799999999999999999999887520 146666666533211 11
Q ss_pred CCCC-CCEEEEcccccCCCChHHHHHHH--HHHhccCCCCc
Q 038343 102 SAFV-PEIILGADILYDRSCFPDLVRIL--AILLNRRKSVS 139 (191)
Q Consensus 102 ~~~~-fDvIi~~d~ly~~~~~~~ll~~l--~~ll~~~g~~~ 139 (191)
.+++ ||+|++..+ |.....+.+++.+ .++|+|+|...
T Consensus 121 ~~~~~fD~I~~~~~-~~~~~~~~~l~~~~~~~~LkpgG~l~ 160 (201)
T 2ift_A 121 QNQPHFDVVFLDPP-FHFNLAEQAISLLCENNWLKPNALIY 160 (201)
T ss_dssp CSSCCEEEEEECCC-SSSCHHHHHHHHHHHTTCEEEEEEEE
T ss_pred ccCCCCCEEEECCC-CCCccHHHHHHHHHhcCccCCCcEEE
Confidence 2457 999998766 6667788888888 45799997543
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.3e-13 Score=103.21 Aligned_cols=110 Identities=18% Similarity=0.130 Sum_probs=86.0
Q ss_pred ccHHHHHHHHhhCCCCCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCC
Q 038343 5 PSSLLLSEFILSFPEIFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPN 84 (191)
Q Consensus 5 ~~a~~L~~~l~~~~~~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~ 84 (191)
+....+.+++.... .++.+|||+|||+|..++.+++.+..+|+++|+++.+++.+++++..++..
T Consensus 45 ~~~~~~~~~l~~~~--~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~------------- 109 (205)
T 3grz_A 45 QTTQLAMLGIERAM--VKPLTVADVGTGSGILAIAAHKLGAKSVLATDISDESMTAAEENAALNGIY------------- 109 (205)
T ss_dssp HHHHHHHHHHHHHC--SSCCEEEEETCTTSHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCC-------------
T ss_pred ccHHHHHHHHHHhc--cCCCEEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCC-------------
Confidence 34445555555432 257799999999999999988887779999999999999999999888754
Q ss_pred eeEEEeecCCCCCcCCCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCC
Q 038343 85 VVQCVHLPWESASESGLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKS 137 (191)
Q Consensus 85 ~i~~~~ldw~~~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~ 137 (191)
++.+...|+.+.. .++||+|+++.++.+ ...+++.+.++|+|+|.
T Consensus 110 ~v~~~~~d~~~~~-----~~~fD~i~~~~~~~~---~~~~l~~~~~~L~~gG~ 154 (205)
T 3grz_A 110 DIALQKTSLLADV-----DGKFDLIVANILAEI---LLDLIPQLDSHLNEDGQ 154 (205)
T ss_dssp CCEEEESSTTTTC-----CSCEEEEEEESCHHH---HHHHGGGSGGGEEEEEE
T ss_pred ceEEEeccccccC-----CCCceEEEECCcHHH---HHHHHHHHHHhcCCCCE
Confidence 2777888875532 368999999765543 57788899999999974
|
| >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.49 E-value=3.1e-14 Score=106.82 Aligned_cols=102 Identities=16% Similarity=0.166 Sum_probs=79.9
Q ss_pred CCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCCC
Q 038343 22 SNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESGL 101 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~~ 101 (191)
++.+|||+|||+|..++.+++.++.+|+++|+++.+++.+++|++.++.. ++.+...|+.+... .
T Consensus 54 ~~~~vLDlgcG~G~~~~~l~~~~~~~V~~vD~s~~~l~~a~~~~~~~~~~-------------~v~~~~~D~~~~~~--~ 118 (202)
T 2fpo_A 54 VDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKAG-------------NARVVNSNAMSFLA--Q 118 (202)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCC-------------SEEEECSCHHHHHS--S
T ss_pred CCCeEEEeCCCcCHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHcCCC-------------cEEEEECCHHHHHh--h
Confidence 57799999999999999877777679999999999999999999988752 46667766543211 1
Q ss_pred CCCCCCEEEEcccccCCCChHHHHHHHHH--HhccCCCCc
Q 038343 102 SAFVPEIILGADILYDRSCFPDLVRILAI--LLNRRKSVS 139 (191)
Q Consensus 102 ~~~~fDvIi~~d~ly~~~~~~~ll~~l~~--ll~~~g~~~ 139 (191)
...+||+|++... |+......+++.+.+ +|+|+|...
T Consensus 119 ~~~~fD~V~~~~p-~~~~~~~~~l~~l~~~~~L~pgG~l~ 157 (202)
T 2fpo_A 119 KGTPHNIVFVDPP-FRRGLLEETINLLEDNGWLADEALIY 157 (202)
T ss_dssp CCCCEEEEEECCS-SSTTTHHHHHHHHHHTTCEEEEEEEE
T ss_pred cCCCCCEEEECCC-CCCCcHHHHHHHHHhcCccCCCcEEE
Confidence 2357999998655 667788888998877 499997543
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.48 E-value=4.4e-13 Score=97.74 Aligned_cols=99 Identities=14% Similarity=0.069 Sum_probs=75.8
Q ss_pred CCCCCcEEEeCCCccHHHHHHHhcC-CCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCc
Q 038343 20 IFSNKSCFEVGSGVGLVGICLAHVK-ASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASE 98 (191)
Q Consensus 20 ~~~~~~VLElG~GtG~~~~~la~~g-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~ 98 (191)
..++.+|||+|||+|..++.+++.. ..+|+++|+++.+++.+++++..++.. .++ +...+..+...
T Consensus 23 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~------------~~~-~~~~d~~~~~~ 89 (178)
T 3hm2_A 23 PKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVS------------DRI-AVQQGAPRAFD 89 (178)
T ss_dssp CCTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCT------------TSE-EEECCTTGGGG
T ss_pred ccCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCC------------CCE-EEecchHhhhh
Confidence 3467799999999999999887762 348999999999999999999887643 245 45555432211
Q ss_pred CCCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCC
Q 038343 99 SGLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKS 137 (191)
Q Consensus 99 ~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~ 137 (191)
...++||+|++..++++ ..+++.+.++|+|+|.
T Consensus 90 --~~~~~~D~i~~~~~~~~----~~~l~~~~~~L~~gG~ 122 (178)
T 3hm2_A 90 --DVPDNPDVIFIGGGLTA----PGVFAAAWKRLPVGGR 122 (178)
T ss_dssp --GCCSCCSEEEECC-TTC----TTHHHHHHHTCCTTCE
T ss_pred --ccCCCCCEEEECCcccH----HHHHHHHHHhcCCCCE
Confidence 11268999999988876 7789999999999974
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=1.6e-13 Score=101.03 Aligned_cols=106 Identities=11% Similarity=-0.070 Sum_probs=77.2
Q ss_pred CCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCC
Q 038343 21 FSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESG 100 (191)
Q Consensus 21 ~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~ 100 (191)
.++.+|||+|||+|..++.+++.+ .+|+++|+++.+++.++++++.++.. ++.+...+..... .
T Consensus 21 ~~~~~vLDiGcG~G~~~~~la~~~-~~v~~vD~s~~~l~~a~~~~~~~~~~-------------~v~~~~~~~~~l~--~ 84 (185)
T 3mti_A 21 DDESIVVDATMGNGNDTAFLAGLS-KKVYAFDVQEQALGKTSQRLSDLGIE-------------NTELILDGHENLD--H 84 (185)
T ss_dssp CTTCEEEESCCTTSHHHHHHHTTS-SEEEEEESCHHHHHHHHHHHHHHTCC-------------CEEEEESCGGGGG--G
T ss_pred CCCCEEEEEcCCCCHHHHHHHHhC-CEEEEEECCHHHHHHHHHHHHHcCCC-------------cEEEEeCcHHHHH--h
Confidence 367899999999999999999885 49999999999999999999988752 4566654433211 1
Q ss_pred CCCCCCCEEEEccc-cc--------CCCChHHHHHHHHHHhccCCCCcccc
Q 038343 101 LSAFVPEIILGADI-LY--------DRSCFPDLVRILAILLNRRKSVSSSR 142 (191)
Q Consensus 101 ~~~~~fDvIi~~d~-ly--------~~~~~~~ll~~l~~ll~~~g~~~~~~ 142 (191)
..+++||+|+++-. +. .......+++.+.++|+|||....+.
T Consensus 85 ~~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 135 (185)
T 3mti_A 85 YVREPIRAAIFNLGYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMI 135 (185)
T ss_dssp TCCSCEEEEEEEEC-----------CHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hccCCcCEEEEeCCCCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEE
Confidence 23468999987521 11 11334567899999999998665443
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.48 E-value=1.4e-13 Score=107.24 Aligned_cols=108 Identities=11% Similarity=-0.004 Sum_probs=77.2
Q ss_pred HHhhCCCCCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeec
Q 038343 13 FILSFPEIFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLP 92 (191)
Q Consensus 13 ~l~~~~~~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ld 92 (191)
.+.......++.+|||||||+|..++.+++.|. +|+++|+++.|++.+++++..+. ....+..++
T Consensus 36 ~il~~l~l~~g~~VLDlGcGtG~~a~~La~~g~-~V~gvD~S~~ml~~Ar~~~~~~~--------------v~~~~~~~~ 100 (261)
T 3iv6_A 36 NDIFLENIVPGSTVAVIGASTRFLIEKALERGA-SVTVFDFSQRMCDDLAEALADRC--------------VTIDLLDIT 100 (261)
T ss_dssp HHHHTTTCCTTCEEEEECTTCHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTSSSC--------------CEEEECCTT
T ss_pred HHHHhcCCCCcCEEEEEeCcchHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHhcc--------------ceeeeeecc
Confidence 333444445788999999999999999999886 99999999999999998865441 112222222
Q ss_pred CCCCCcCCCCCCCCCEEEEcccccCC--CChHHHHHHHHHHhccCCCCc
Q 038343 93 WESASESGLSAFVPEIILGADILYDR--SCFPDLVRILAILLNRRKSVS 139 (191)
Q Consensus 93 w~~~~~~~~~~~~fDvIi~~d~ly~~--~~~~~ll~~l~~ll~~~g~~~ 139 (191)
... .....++||+|+++.++++. .....+++.+.++| |||...
T Consensus 101 ~~~---~~~~~~~fD~Vv~~~~l~~~~~~~~~~~l~~l~~lL-PGG~l~ 145 (261)
T 3iv6_A 101 AEI---PKELAGHFDFVLNDRLINRFTTEEARRACLGMLSLV-GSGTVR 145 (261)
T ss_dssp SCC---CGGGTTCCSEEEEESCGGGSCHHHHHHHHHHHHHHH-TTSEEE
T ss_pred ccc---ccccCCCccEEEEhhhhHhCCHHHHHHHHHHHHHhC-cCcEEE
Confidence 100 01123589999999988754 35667899999999 998644
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A | Back alignment and structure |
|---|
Probab=99.47 E-value=1.9e-13 Score=112.11 Aligned_cols=115 Identities=13% Similarity=0.076 Sum_probs=88.0
Q ss_pred CCCCCcEEEeCCCccHHHHHHHhc-C-CCeEEEEcCChHHHHHHHHHHHHhcCCC-CcccccccCCCCeeEEEeecCCCC
Q 038343 20 IFSNKSCFEVGSGVGLVGICLAHV-K-ASKVTLTDGDHLTLANMRSNLELNQLST-DTSLLESYEDPNVVQCVHLPWESA 96 (191)
Q Consensus 20 ~~~~~~VLElG~GtG~~~~~la~~-g-~~~v~~tD~~~~~l~~~~~n~~~n~~~~-~~~~~~~~~~~~~i~~~~ldw~~~ 96 (191)
..++.+|||+|||+|..+..+++. + ..+|+++|+++.+++.++++++.+.... . .....++.+...|+.+.
T Consensus 81 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g------~~~~~~v~~~~~d~~~l 154 (383)
T 4fsd_A 81 SLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFG------SPSRSNVRFLKGFIENL 154 (383)
T ss_dssp GGTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHS------STTCCCEEEEESCTTCG
T ss_pred CCCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhccc------ccCCCceEEEEccHHHh
Confidence 346789999999999999877765 2 2399999999999999999987652100 0 00013578888887764
Q ss_pred CcC---CCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCcc
Q 038343 97 SES---GLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVSS 140 (191)
Q Consensus 97 ~~~---~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~~ 140 (191)
... .+++++||+|++..++++..+...+++.+.++|+|||....
T Consensus 155 ~~~~~~~~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i 201 (383)
T 4fsd_A 155 ATAEPEGVPDSSVDIVISNCVCNLSTNKLALFKEIHRVLRDGGELYF 201 (383)
T ss_dssp GGCBSCCCCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEE
T ss_pred hhcccCCCCCCCEEEEEEccchhcCCCHHHHHHHHHHHcCCCCEEEE
Confidence 211 34567899999999999999999999999999999986543
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.2e-13 Score=107.26 Aligned_cols=110 Identities=10% Similarity=0.050 Sum_probs=85.1
Q ss_pred HHHHHHhhCCCCCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEE
Q 038343 9 LLSEFILSFPEIFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQC 88 (191)
Q Consensus 9 ~L~~~l~~~~~~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~ 88 (191)
.+.+.+.......++.+|||+|||+|..+..+++.+. +|+++|+++.+++.++++. ++.+
T Consensus 21 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~-------------------~~~~ 80 (261)
T 3ege_A 21 RIVNAIINLLNLPKGSVIADIGAGTGGYSVALANQGL-FVYAVEPSIVMRQQAVVHP-------------------QVEW 80 (261)
T ss_dssp HHHHHHHHHHCCCTTCEEEEETCTTSHHHHHHHTTTC-EEEEECSCHHHHHSSCCCT-------------------TEEE
T ss_pred HHHHHHHHHhCCCCCCEEEEEcCcccHHHHHHHhCCC-EEEEEeCCHHHHHHHHhcc-------------------CCEE
Confidence 3445554443345778999999999999999988765 9999999998877654332 3666
Q ss_pred EeecCCCCCcCCCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCcccc
Q 038343 89 VHLPWESASESGLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVSSSR 142 (191)
Q Consensus 89 ~~ldw~~~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~~~~ 142 (191)
...|+.+.. +.+++||+|++..++++..+...+++.+.++|+ ||......
T Consensus 81 ~~~d~~~~~---~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~Lk-gG~~~~~~ 130 (261)
T 3ege_A 81 FTGYAENLA---LPDKSVDGVISILAIHHFSHLEKSFQEMQRIIR-DGTIVLLT 130 (261)
T ss_dssp ECCCTTSCC---SCTTCBSEEEEESCGGGCSSHHHHHHHHHHHBC-SSCEEEEE
T ss_pred EECchhhCC---CCCCCEeEEEEcchHhhccCHHHHHHHHHHHhC-CcEEEEEE
Confidence 777765432 345789999999999999999999999999999 87554443
|
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=4.2e-13 Score=105.14 Aligned_cols=114 Identities=15% Similarity=0.133 Sum_probs=84.0
Q ss_pred cHHHHHHHHhhCCCCCCCCcEEEeCCCccHHHHHHHhc-CCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCC
Q 038343 6 SSLLLSEFILSFPEIFSNKSCFEVGSGVGLVGICLAHV-KASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPN 84 (191)
Q Consensus 6 ~a~~L~~~l~~~~~~~~~~~VLElG~GtG~~~~~la~~-g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~ 84 (191)
.+..+.+.+..... .++.+|||+|||+|..++.+++. +..+|+++|+++.+++.+++|+..++..
T Consensus 94 ~te~l~~~~l~~~~-~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~------------- 159 (276)
T 2b3t_A 94 DTECLVEQALARLP-EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIK------------- 159 (276)
T ss_dssp THHHHHHHHHHHSC-SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCC-------------
T ss_pred hHHHHHHHHHHhcc-cCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC-------------
Confidence 35556565554322 35679999999999999988754 3459999999999999999999888743
Q ss_pred eeEEEeecCCCCCcCCCCCCCCCEEEEcccccCC-------------------------CChHHHHHHHHHHhccCCC
Q 038343 85 VVQCVHLPWESASESGLSAFVPEIILGADILYDR-------------------------SCFPDLVRILAILLNRRKS 137 (191)
Q Consensus 85 ~i~~~~ldw~~~~~~~~~~~~fDvIi~~d~ly~~-------------------------~~~~~ll~~l~~ll~~~g~ 137 (191)
++.+...|+.+. +..++||+|+++.+.... .....+++.+.++|+|+|.
T Consensus 160 ~v~~~~~d~~~~----~~~~~fD~Iv~npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~ 233 (276)
T 2b3t_A 160 NIHILQSDWFSA----LAGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGF 233 (276)
T ss_dssp SEEEECCSTTGG----GTTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEE
T ss_pred ceEEEEcchhhh----cccCCccEEEECCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCE
Confidence 477888887653 224589999997433221 1346788888999999974
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.46 E-value=2.7e-13 Score=101.11 Aligned_cols=98 Identities=18% Similarity=0.063 Sum_probs=80.4
Q ss_pred CCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCCCC
Q 038343 23 NKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESGLS 102 (191)
Q Consensus 23 ~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~~~ 102 (191)
+.+|||+|||+|..+..++..+. +|+++|+++.+++.++++. .++.+...|+.+.. +.
T Consensus 42 ~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~------------------~~~~~~~~d~~~~~---~~ 99 (203)
T 3h2b_A 42 DGVILDVGSGTGRWTGHLASLGH-QIEGLEPATRLVELARQTH------------------PSVTFHHGTITDLS---DS 99 (203)
T ss_dssp CSCEEEETCTTCHHHHHHHHTTC-CEEEECCCHHHHHHHHHHC------------------TTSEEECCCGGGGG---GS
T ss_pred CCeEEEecCCCCHHHHHHHhcCC-eEEEEeCCHHHHHHHHHhC------------------CCCeEEeCcccccc---cC
Confidence 67999999999999998888877 8999999999999988762 23566666665432 34
Q ss_pred CCCCCEEEEcccccCCC--ChHHHHHHHHHHhccCCCCcccc
Q 038343 103 AFVPEIILGADILYDRS--CFPDLVRILAILLNRRKSVSSSR 142 (191)
Q Consensus 103 ~~~fDvIi~~d~ly~~~--~~~~ll~~l~~ll~~~g~~~~~~ 142 (191)
+++||+|++..++++.. +...+++.+.++|+|+|......
T Consensus 100 ~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~ 141 (203)
T 3h2b_A 100 PKRWAGLLAWYSLIHMGPGELPDALVALRMAVEDGGGLLMSF 141 (203)
T ss_dssp CCCEEEEEEESSSTTCCTTTHHHHHHHHHHTEEEEEEEEEEE
T ss_pred CCCeEEEEehhhHhcCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 57899999999999875 89999999999999998765444
|
| >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.46 E-value=2.3e-14 Score=105.88 Aligned_cols=96 Identities=14% Similarity=0.024 Sum_probs=78.0
Q ss_pred CCCcEEEeCCCccHHHHHHHhc--CCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcC
Q 038343 22 SNKSCFEVGSGVGLVGICLAHV--KASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASES 99 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~--g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~ 99 (191)
+..+|||||||+|.+++.++.. ++ +|+++|+|+.|++.+++|+..++.. .++.+ .|...
T Consensus 49 ~~~~VLDlGCG~GplAl~l~~~~p~a-~~~A~Di~~~~leiar~~~~~~g~~------------~~v~~--~d~~~---- 109 (200)
T 3fzg_A 49 HVSSILDFGCGFNPLALYQWNENEKI-IYHAYDIDRAEIAFLSSIIGKLKTT------------IKYRF--LNKES---- 109 (200)
T ss_dssp CCSEEEEETCTTHHHHHHHHCSSCCC-EEEEECSCHHHHHHHHHHHHHSCCS------------SEEEE--ECCHH----
T ss_pred CCCeEEEecCCCCHHHHHHHhcCCCC-EEEEEeCCHHHHHHHHHHHHhcCCC------------ccEEE--ecccc----
Confidence 4569999999999999988776 45 9999999999999999999998865 24554 32211
Q ss_pred CCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCC
Q 038343 100 GLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRK 136 (191)
Q Consensus 100 ~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g 136 (191)
....++||+|++..+++..++.+..+..+.+.|+|+|
T Consensus 110 ~~~~~~~DvVLa~k~LHlL~~~~~al~~v~~~L~pgg 146 (200)
T 3fzg_A 110 DVYKGTYDVVFLLKMLPVLKQQDVNILDFLQLFHTQN 146 (200)
T ss_dssp HHTTSEEEEEEEETCHHHHHHTTCCHHHHHHTCEEEE
T ss_pred cCCCCCcChhhHhhHHHhhhhhHHHHHHHHHHhCCCC
Confidence 1344679999999999988777777889999999996
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.2e-13 Score=100.30 Aligned_cols=95 Identities=16% Similarity=0.155 Sum_probs=79.6
Q ss_pred CCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCCC
Q 038343 22 SNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESGL 101 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~~ 101 (191)
++.+|||+|||+|..+..+++.+. +|+++|+++.+++.++++ . .++.+...| ..+
T Consensus 17 ~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~----~--------------~~v~~~~~d------~~~ 71 (170)
T 3i9f_A 17 KKGVIVDYGCGNGFYCKYLLEFAT-KLYCIDINVIALKEVKEK----F--------------DSVITLSDP------KEI 71 (170)
T ss_dssp CCEEEEEETCTTCTTHHHHHTTEE-EEEEECSCHHHHHHHHHH----C--------------TTSEEESSG------GGS
T ss_pred CCCeEEEECCCCCHHHHHHHhhcC-eEEEEeCCHHHHHHHHHh----C--------------CCcEEEeCC------CCC
Confidence 567999999999999999888876 999999999999999877 1 245666666 123
Q ss_pred CCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCccc
Q 038343 102 SAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVSSS 141 (191)
Q Consensus 102 ~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~~~ 141 (191)
.+++||+|+++.++++..+...+++.+.++|+|+|.....
T Consensus 72 ~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~ 111 (170)
T 3i9f_A 72 PDNSVDFILFANSFHDMDDKQHVISEVKRILKDDGRVIII 111 (170)
T ss_dssp CTTCEEEEEEESCSTTCSCHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCCceEEEEEccchhcccCHHHHHHHHHHhcCCCCEEEEE
Confidence 4568999999999999999999999999999999865543
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.46 E-value=2.8e-13 Score=101.54 Aligned_cols=114 Identities=11% Similarity=0.040 Sum_probs=85.1
Q ss_pred HHHHHHhhCCCCCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEE
Q 038343 9 LLSEFILSFPEIFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQC 88 (191)
Q Consensus 9 ~L~~~l~~~~~~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~ 88 (191)
.+.+++.... .++.+|||+|||+|..+..+++.+..+|+++|+++.+++.++++.... .++.+
T Consensus 31 ~~~~~l~~~~--~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~~---------------~~i~~ 93 (215)
T 2pxx_A 31 SFRALLEPEL--RPEDRILVLGCGNSALSYELFLGGFPNVTSVDYSSVVVAAMQACYAHV---------------PQLRW 93 (215)
T ss_dssp HHHHHHGGGC--CTTCCEEEETCTTCSHHHHHHHTTCCCEEEEESCHHHHHHHHHHTTTC---------------TTCEE
T ss_pred HHHHHHHHhc--CCCCeEEEECCCCcHHHHHHHHcCCCcEEEEeCCHHHHHHHHHhcccC---------------CCcEE
Confidence 3445554432 367799999999999999888887668999999999999998876431 24667
Q ss_pred EeecCCCCCcCCCCCCCCCEEEEcccccCC---------------CChHHHHHHHHHHhccCCCCcccc
Q 038343 89 VHLPWESASESGLSAFVPEIILGADILYDR---------------SCFPDLVRILAILLNRRKSVSSSR 142 (191)
Q Consensus 89 ~~ldw~~~~~~~~~~~~fDvIi~~d~ly~~---------------~~~~~ll~~l~~ll~~~g~~~~~~ 142 (191)
...|..+. .+.+++||+|++..++.+. .....+++.+.++|+|+|......
T Consensus 94 ~~~d~~~~---~~~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~ 159 (215)
T 2pxx_A 94 ETMDVRKL---DFPSASFDVVLEKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMT 159 (215)
T ss_dssp EECCTTSC---CSCSSCEEEEEEESHHHHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEcchhcC---CCCCCcccEEEECcchhhhccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEe
Confidence 77776543 2345689999998777432 256889999999999998655433
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.46 E-value=9.5e-13 Score=98.72 Aligned_cols=95 Identities=16% Similarity=0.023 Sum_probs=77.1
Q ss_pred CCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCCC
Q 038343 22 SNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESGL 101 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~~ 101 (191)
++.+|||+|||+|..+..+ +..+|+++|+++.+++.++++. . ++.+...|..+.. +
T Consensus 36 ~~~~vLdiG~G~G~~~~~l---~~~~v~~vD~s~~~~~~a~~~~--~----------------~~~~~~~d~~~~~---~ 91 (211)
T 2gs9_A 36 PGESLLEVGAGTGYWLRRL---PYPQKVGVEPSEAMLAVGRRRA--P----------------EATWVRAWGEALP---F 91 (211)
T ss_dssp CCSEEEEETCTTCHHHHHC---CCSEEEEECCCHHHHHHHHHHC--T----------------TSEEECCCTTSCC---S
T ss_pred CCCeEEEECCCCCHhHHhC---CCCeEEEEeCCHHHHHHHHHhC--C----------------CcEEEEcccccCC---C
Confidence 7789999999999888766 4458999999999999988765 1 2455666654432 3
Q ss_pred CCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCcc
Q 038343 102 SAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVSS 140 (191)
Q Consensus 102 ~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~~ 140 (191)
.+++||+|++..++++..+...+++.+.++|+|+|....
T Consensus 92 ~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i 130 (211)
T 2gs9_A 92 PGESFDVVLLFTTLEFVEDVERVLLEARRVLRPGGALVV 130 (211)
T ss_dssp CSSCEEEEEEESCTTTCSCHHHHHHHHHHHEEEEEEEEE
T ss_pred CCCcEEEEEEcChhhhcCCHHHHHHHHHHHcCCCCEEEE
Confidence 456899999999999999999999999999999986544
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.46 E-value=2.2e-13 Score=102.30 Aligned_cols=95 Identities=14% Similarity=0.153 Sum_probs=76.9
Q ss_pred CCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCCC
Q 038343 22 SNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESGL 101 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~~ 101 (191)
++.+|||+|||+|..+..+++.+. +|+++|+++.+++.++++. +. .+...+.....
T Consensus 43 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~---~~----------------~~~~~d~~~~~---- 98 (211)
T 3e23_A 43 AGAKILELGCGAGYQAEAMLAAGF-DVDATDGSPELAAEASRRL---GR----------------PVRTMLFHQLD---- 98 (211)
T ss_dssp TTCEEEESSCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHH---TS----------------CCEECCGGGCC----
T ss_pred CCCcEEEECCCCCHHHHHHHHcCC-eEEEECCCHHHHHHHHHhc---CC----------------ceEEeeeccCC----
Confidence 577999999999999998888876 9999999999999998876 21 12334433322
Q ss_pred CCCCCCEEEEcccccCCC--ChHHHHHHHHHHhccCCCCcc
Q 038343 102 SAFVPEIILGADILYDRS--CFPDLVRILAILLNRRKSVSS 140 (191)
Q Consensus 102 ~~~~fDvIi~~d~ly~~~--~~~~ll~~l~~ll~~~g~~~~ 140 (191)
.+++||+|++..++++.. +...+++.+.++|+|+|....
T Consensus 99 ~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~ 139 (211)
T 3e23_A 99 AIDAYDAVWAHACLLHVPRDELADVLKLIWRALKPGGLFYA 139 (211)
T ss_dssp CCSCEEEEEECSCGGGSCHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred CCCcEEEEEecCchhhcCHHHHHHHHHHHHHhcCCCcEEEE
Confidence 346899999999999887 788999999999999986544
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.46 E-value=3.3e-13 Score=102.82 Aligned_cols=102 Identities=15% Similarity=0.124 Sum_probs=81.3
Q ss_pred CCCCCcEEEeCCCccHHHHHHHhcC-CCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCc
Q 038343 20 IFSNKSCFEVGSGVGLVGICLAHVK-ASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASE 98 (191)
Q Consensus 20 ~~~~~~VLElG~GtG~~~~~la~~g-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~ 98 (191)
..++.+|||+|||+|..+..+++.. ..+|+++|+++.+++.+++++..++ ++.+...|..+...
T Consensus 42 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~---------------~~~~~~~d~~~~~~ 106 (234)
T 3dtn_A 42 DTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNL---------------KVKYIEADYSKYDF 106 (234)
T ss_dssp SCSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSCT---------------TEEEEESCTTTCCC
T ss_pred CCCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccCC---------------CEEEEeCchhccCC
Confidence 4467899999999999999887763 3499999999999999988764332 46777877765432
Q ss_pred CCCCCCCCCEEEEcccccCCCChH--HHHHHHHHHhccCCCCcc
Q 038343 99 SGLSAFVPEIILGADILYDRSCFP--DLVRILAILLNRRKSVSS 140 (191)
Q Consensus 99 ~~~~~~~fDvIi~~d~ly~~~~~~--~ll~~l~~ll~~~g~~~~ 140 (191)
. ++||+|++..++++..+.+ .+++.+.++|+|||....
T Consensus 107 ---~-~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~ 146 (234)
T 3dtn_A 107 ---E-EKYDMVVSALSIHHLEDEDKKELYKRSYSILKESGIFIN 146 (234)
T ss_dssp ---C-SCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred ---C-CCceEEEEeCccccCCHHHHHHHHHHHHHhcCCCcEEEE
Confidence 2 6899999999999887655 599999999999986443
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} | Back alignment and structure |
|---|
Probab=99.45 E-value=4.8e-13 Score=104.29 Aligned_cols=108 Identities=16% Similarity=0.113 Sum_probs=84.5
Q ss_pred CCCCCcEEEeCCCccHHHHHHHhc-CC-CeEEEEcCChH------HHHHHHHHHHHhcCCCCcccccccCCCCeeEEEee
Q 038343 20 IFSNKSCFEVGSGVGLVGICLAHV-KA-SKVTLTDGDHL------TLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHL 91 (191)
Q Consensus 20 ~~~~~~VLElG~GtG~~~~~la~~-g~-~~v~~tD~~~~------~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~l 91 (191)
..++.+|||+|||+|..+..+++. |. .+|+++|+++. +++.+++++..++.. .++.+...
T Consensus 41 ~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~------------~~v~~~~~ 108 (275)
T 3bkx_A 41 VKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLG------------DRLTVHFN 108 (275)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTG------------GGEEEECS
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCC------------CceEEEEC
Confidence 346789999999999999988876 43 49999999987 899999998876643 35777777
Q ss_pred c-CCCCCcCCCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCcc
Q 038343 92 P-WESASESGLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVSS 140 (191)
Q Consensus 92 d-w~~~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~~ 140 (191)
| +.... ..+.+++||+|++..++++..+...+++.++.+++|+|....
T Consensus 109 d~~~~~~-~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~l~~~gG~l~~ 157 (275)
T 3bkx_A 109 TNLSDDL-GPIADQHFDRVVLAHSLWYFASANALALLFKNMAAVCDHVDV 157 (275)
T ss_dssp CCTTTCC-GGGTTCCCSEEEEESCGGGSSCHHHHHHHHHHHTTTCSEEEE
T ss_pred Chhhhcc-CCCCCCCEEEEEEccchhhCCCHHHHHHHHHHHhCCCCEEEE
Confidence 6 32221 123457899999999999999999999999999888876544
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=99.45 E-value=5.1e-14 Score=105.71 Aligned_cols=123 Identities=8% Similarity=-0.101 Sum_probs=83.1
Q ss_pred HHHHHHhhCCCCCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEE
Q 038343 9 LLSEFILSFPEIFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQC 88 (191)
Q Consensus 9 ~L~~~l~~~~~~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~ 88 (191)
.|.+++.... ..++.+|||+|||+|..+..+++.|. +|+++|+|+.|++.++++.......... .........++.+
T Consensus 10 ~l~~~~~~l~-~~~~~~vLD~GCG~G~~~~~la~~g~-~V~gvD~S~~~l~~a~~~~~~~~~~~~~-~~~~~~~~~~v~~ 86 (203)
T 1pjz_A 10 DLQQYWSSLN-VVPGARVLVPLCGKSQDMSWLSGQGY-HVVGAELSEAAVERYFTERGEQPHITSQ-GDFKVYAAPGIEI 86 (203)
T ss_dssp HHHHHHHHHC-CCTTCEEEETTTCCSHHHHHHHHHCC-EEEEEEECHHHHHHHHHHHCSCSEEEEE-TTEEEEECSSSEE
T ss_pred HHHHHHHhcc-cCCCCEEEEeCCCCcHhHHHHHHCCC-eEEEEeCCHHHHHHHHHHccCCcccccc-cccccccCCccEE
Confidence 4555654321 23677999999999999999999887 9999999999999998764321000000 0000000135677
Q ss_pred EeecCCCCCcCCCCC-CCCCEEEEcccccCCC--ChHHHHHHHHHHhccCCC
Q 038343 89 VHLPWESASESGLSA-FVPEIILGADILYDRS--CFPDLVRILAILLNRRKS 137 (191)
Q Consensus 89 ~~ldw~~~~~~~~~~-~~fDvIi~~d~ly~~~--~~~~ll~~l~~ll~~~g~ 137 (191)
...|..+... .+ ++||+|++..++++.. ....+++.+.++|||||.
T Consensus 87 ~~~d~~~l~~---~~~~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~LkpgG~ 135 (203)
T 1pjz_A 87 WCGDFFALTA---RDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACS 135 (203)
T ss_dssp EEECCSSSTH---HHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEE
T ss_pred EECccccCCc---ccCCCEEEEEECcchhhCCHHHHHHHHHHHHHHcCCCcE
Confidence 7777655431 22 5799999988887654 345689999999999986
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A | Back alignment and structure |
|---|
Probab=99.45 E-value=2.9e-13 Score=100.90 Aligned_cols=102 Identities=16% Similarity=0.024 Sum_probs=80.9
Q ss_pred CCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCCC
Q 038343 22 SNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESGL 101 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~~ 101 (191)
++ +|||+|||+|..+..+++.+. +|+++|+++.+++.++++...++. ++.+...|..+.. +
T Consensus 30 ~~-~vLdiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~--------------~~~~~~~d~~~~~---~ 90 (202)
T 2kw5_A 30 QG-KILCLAEGEGRNACFLASLGY-EVTAVDQSSVGLAKAKQLAQEKGV--------------KITTVQSNLADFD---I 90 (202)
T ss_dssp SS-EEEECCCSCTHHHHHHHTTTC-EEEEECSSHHHHHHHHHHHHHHTC--------------CEEEECCBTTTBS---C
T ss_pred CC-CEEEECCCCCHhHHHHHhCCC-eEEEEECCHHHHHHHHHHHHhcCC--------------ceEEEEcChhhcC---C
Confidence 45 999999999999999998876 999999999999999999877653 3666777765432 3
Q ss_pred CCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCcccc
Q 038343 102 SAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVSSSR 142 (191)
Q Consensus 102 ~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~~~~ 142 (191)
.+++||+|+++.+.+...+...+++.+.++|+|+|......
T Consensus 91 ~~~~fD~v~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 131 (202)
T 2kw5_A 91 VADAWEGIVSIFCHLPSSLRQQLYPKVYQGLKPGGVFILEG 131 (202)
T ss_dssp CTTTCSEEEEECCCCCHHHHHHHHHHHHTTCCSSEEEEEEE
T ss_pred CcCCccEEEEEhhcCCHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 45689999996544434567889999999999998655443
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.45 E-value=6e-13 Score=108.87 Aligned_cols=113 Identities=15% Similarity=0.150 Sum_probs=83.8
Q ss_pred HhhCCCCCCCCcEEEeCCCccHHHHHHHhcC-CCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeec
Q 038343 14 ILSFPEIFSNKSCFEVGSGVGLVGICLAHVK-ASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLP 92 (191)
Q Consensus 14 l~~~~~~~~~~~VLElG~GtG~~~~~la~~g-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ld 92 (191)
+.......++.+|||+|||+|.+++.+++.+ ..+|+++|+++.+++.+++|+..|+.... .++.+...|
T Consensus 214 ll~~l~~~~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~----------~~v~~~~~D 283 (375)
T 4dcm_A 214 FMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEAL----------DRCEFMINN 283 (375)
T ss_dssp HHHTCCCSCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCGGGG----------GGEEEEECS
T ss_pred HHHhCcccCCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCCCcC----------ceEEEEech
Confidence 3333333455799999999999999888875 34999999999999999999999885421 246667776
Q ss_pred CCCCCcCCCCCCCCCEEEEcccccCC-----CChHHHHHHHHHHhccCCCCcc
Q 038343 93 WESASESGLSAFVPEIILGADILYDR-----SCFPDLVRILAILLNRRKSVSS 140 (191)
Q Consensus 93 w~~~~~~~~~~~~fDvIi~~d~ly~~-----~~~~~ll~~l~~ll~~~g~~~~ 140 (191)
..+. +..++||+|+++.+++.. .....+++.+.++|+|+|....
T Consensus 284 ~~~~----~~~~~fD~Ii~nppfh~~~~~~~~~~~~~l~~~~~~LkpgG~l~i 332 (375)
T 4dcm_A 284 ALSG----VEPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYI 332 (375)
T ss_dssp TTTT----CCTTCEEEEEECCCC-------CCHHHHHHHHHHHHEEEEEEEEE
T ss_pred hhcc----CCCCCeeEEEECCCcccCcccCHHHHHHHHHHHHHhCCCCcEEEE
Confidence 6543 344689999998887742 2234789999999999986544
|
| >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 | Back alignment and structure |
|---|
Probab=99.45 E-value=1.4e-14 Score=112.98 Aligned_cols=122 Identities=13% Similarity=0.063 Sum_probs=81.9
Q ss_pred CCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCccc-----ccccC-----------CC
Q 038343 20 IFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSL-----LESYE-----------DP 83 (191)
Q Consensus 20 ~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~-----~~~~~-----------~~ 83 (191)
..++.+|||||||+|..++.++..|+.+|+++|+++.+++.++++++.+......+. ..... ..
T Consensus 53 ~~~g~~vLDiGCG~G~~~~~~~~~~~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~~ 132 (263)
T 2a14_A 53 GLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLR 132 (263)
T ss_dssp SCCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred CCCCceEEEeCCCccHHHHHHHHhhhcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHHH
Confidence 457789999999999888877788777899999999999999988765431110000 00000 00
Q ss_pred CeeE-EEeecCCCCCc-CCCCCCCCCEEEEcccccCC----CChHHHHHHHHHHhccCCCCccc
Q 038343 84 NVVQ-CVHLPWESASE-SGLSAFVPEIILGADILYDR----SCFPDLVRILAILLNRRKSVSSS 141 (191)
Q Consensus 84 ~~i~-~~~ldw~~~~~-~~~~~~~fDvIi~~d~ly~~----~~~~~ll~~l~~ll~~~g~~~~~ 141 (191)
..+. +...|..+... .....++||+|+++.++++. ++...+++.+.++|||||.....
T Consensus 133 ~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~ 196 (263)
T 2a14_A 133 AAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTT 196 (263)
T ss_dssp HHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred hhhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 1232 56666654321 11224589999999998762 34567888999999999876544
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.1e-12 Score=95.70 Aligned_cols=106 Identities=13% Similarity=0.094 Sum_probs=82.4
Q ss_pred HHHHHHHHhhCCCCCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCee
Q 038343 7 SLLLSEFILSFPEIFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVV 86 (191)
Q Consensus 7 a~~L~~~l~~~~~~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i 86 (191)
...+.+++.......++.+|||+|||+|..+..+++ +..+|+++|+++.+++.+++++..++.. ++
T Consensus 20 ~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~-------------~~ 85 (183)
T 2yxd_A 20 KEEIRAVSIGKLNLNKDDVVVDVGCGSGGMTVEIAK-RCKFVYAIDYLDGAIEVTKQNLAKFNIK-------------NC 85 (183)
T ss_dssp CHHHHHHHHHHHCCCTTCEEEEESCCCSHHHHHHHT-TSSEEEEEECSHHHHHHHHHHHHHTTCC-------------SE
T ss_pred HHHHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHHcCCC-------------cE
Confidence 344455555444445778999999999999998888 4459999999999999999999888752 46
Q ss_pred EEEeecCCCCCcCCCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCC
Q 038343 87 QCVHLPWESASESGLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRK 136 (191)
Q Consensus 87 ~~~~ldw~~~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g 136 (191)
.+...|+.+. ++.++||+|++..+ .....+++.+.++ |+|
T Consensus 86 ~~~~~d~~~~----~~~~~~D~i~~~~~----~~~~~~l~~~~~~--~gG 125 (183)
T 2yxd_A 86 QIIKGRAEDV----LDKLEFNKAFIGGT----KNIEKIIEILDKK--KIN 125 (183)
T ss_dssp EEEESCHHHH----GGGCCCSEEEECSC----SCHHHHHHHHHHT--TCC
T ss_pred EEEECCcccc----ccCCCCcEEEECCc----ccHHHHHHHHhhC--CCC
Confidence 7777776542 23358999999887 6788999999988 775
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A | Back alignment and structure |
|---|
Probab=99.45 E-value=6.1e-13 Score=107.75 Aligned_cols=110 Identities=18% Similarity=0.187 Sum_probs=86.2
Q ss_pred HHhhCCCCCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeec
Q 038343 13 FILSFPEIFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLP 92 (191)
Q Consensus 13 ~l~~~~~~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ld 92 (191)
.+.......++.+|||+|||+|.+++.+++.|+.+|+++|.++ +++.++++++.++.. .++.+...|
T Consensus 41 ~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~l~------------~~v~~~~~d 107 (348)
T 2y1w_A 41 AILQNHTDFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKSNNLT------------DRIVVIPGK 107 (348)
T ss_dssp HHHHTGGGTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-HHHHHHHHHHHTTCT------------TTEEEEESC
T ss_pred HHHhccccCCcCEEEEcCCCccHHHHHHHhCCCCEEEEECCHH-HHHHHHHHHHHcCCC------------CcEEEEEcc
Confidence 3444444557889999999999999999988877999999996 889999999988764 467888888
Q ss_pred CCCCCcCCCCCCCCCEEEEcccccCC--CChHHHHHHHHHHhccCCCCc
Q 038343 93 WESASESGLSAFVPEIILGADILYDR--SCFPDLVRILAILLNRRKSVS 139 (191)
Q Consensus 93 w~~~~~~~~~~~~fDvIi~~d~ly~~--~~~~~ll~~l~~ll~~~g~~~ 139 (191)
+.+.. + ..+||+|++..++++. +.....+..++++|+|+|...
T Consensus 108 ~~~~~---~-~~~~D~Ivs~~~~~~~~~~~~~~~l~~~~~~LkpgG~li 152 (348)
T 2y1w_A 108 VEEVS---L-PEQVDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMF 152 (348)
T ss_dssp TTTCC---C-SSCEEEEEECCCBTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred hhhCC---C-CCceeEEEEeCchhcCChHHHHHHHHHHHhhcCCCeEEE
Confidence 76542 1 2479999998887754 345567778889999998654
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.45 E-value=1.8e-14 Score=105.36 Aligned_cols=105 Identities=16% Similarity=0.175 Sum_probs=79.4
Q ss_pred CCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcC
Q 038343 20 IFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASES 99 (191)
Q Consensus 20 ~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~ 99 (191)
..++.+|||+|||+|..++.+++.+..+|+++|+++.+++.+++|++.+++. .++.+...|+.+...
T Consensus 29 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~------------~~~~~~~~d~~~~~~- 95 (177)
T 2esr_A 29 YFNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAE------------NRFTLLKMEAERAID- 95 (177)
T ss_dssp CCCSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCG------------GGEEEECSCHHHHHH-
T ss_pred hcCCCeEEEeCCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCCC------------CceEEEECcHHHhHH-
Confidence 3467899999999999999888887669999999999999999999887653 346777776644211
Q ss_pred CCCCCCCCEEEEcccccCCCChHHHHHHHH--HHhccCCCCc
Q 038343 100 GLSAFVPEIILGADILYDRSCFPDLVRILA--ILLNRRKSVS 139 (191)
Q Consensus 100 ~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~--~ll~~~g~~~ 139 (191)
....+||+|++..+ |.....+.+++.+. ++|+|+|...
T Consensus 96 -~~~~~fD~i~~~~~-~~~~~~~~~~~~l~~~~~L~~gG~l~ 135 (177)
T 2esr_A 96 -CLTGRFDLVFLDPP-YAKETIVATIEALAAKNLLSEQVMVV 135 (177)
T ss_dssp -HBCSCEEEEEECCS-SHHHHHHHHHHHHHHTTCEEEEEEEE
T ss_pred -hhcCCCCEEEECCC-CCcchHHHHHHHHHhCCCcCCCcEEE
Confidence 11246999998654 43345677778887 8899997544
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=3.6e-13 Score=99.00 Aligned_cols=111 Identities=19% Similarity=0.134 Sum_probs=85.0
Q ss_pred HHHHHHHhhCCCCCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeE
Q 038343 8 LLLSEFILSFPEIFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQ 87 (191)
Q Consensus 8 ~~L~~~l~~~~~~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~ 87 (191)
..+..++.......++.+|||+|||+|..+..+++.+ .+|+++|.++.+++.+++++..++.. .++.
T Consensus 19 ~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~-~~v~~~D~~~~~~~~a~~~~~~~~~~------------~~~~ 85 (192)
T 1l3i_A 19 MEVRCLIMCLAEPGKNDVAVDVGCGTGGVTLELAGRV-RRVYAIDRNPEAISTTEMNLQRHGLG------------DNVT 85 (192)
T ss_dssp HHHHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHTTS-SEEEEEESCHHHHHHHHHHHHHTTCC------------TTEE
T ss_pred HHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHhc-CEEEEEECCHHHHHHHHHHHHHcCCC------------cceE
Confidence 3444555444445578899999999999999988887 59999999999999999999888753 2466
Q ss_pred EEeecCCCCCcCCCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCC
Q 038343 88 CVHLPWESASESGLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKS 137 (191)
Q Consensus 88 ~~~ldw~~~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~ 137 (191)
+...|+.+... ...+||+|++..++. ....+++.+.++|+|+|.
T Consensus 86 ~~~~d~~~~~~---~~~~~D~v~~~~~~~---~~~~~l~~~~~~l~~gG~ 129 (192)
T 1l3i_A 86 LMEGDAPEALC---KIPDIDIAVVGGSGG---ELQEILRIIKDKLKPGGR 129 (192)
T ss_dssp EEESCHHHHHT---TSCCEEEEEESCCTT---CHHHHHHHHHHTEEEEEE
T ss_pred EEecCHHHhcc---cCCCCCEEEECCchH---HHHHHHHHHHHhcCCCcE
Confidence 67766543111 114799999987653 578999999999999974
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=4.5e-14 Score=108.12 Aligned_cols=103 Identities=15% Similarity=0.088 Sum_probs=77.5
Q ss_pred CCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCCC
Q 038343 22 SNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESGL 101 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~~ 101 (191)
++.+|||+|||+|..+..+++.+..+|+++|+++.+++.++++...++ .++.+...|+.+.. ..+
T Consensus 60 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~--------------~~v~~~~~d~~~~~-~~~ 124 (236)
T 1zx0_A 60 KGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQT--------------HKVIPLKGLWEDVA-PTL 124 (236)
T ss_dssp TCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCS--------------SEEEEEESCHHHHG-GGS
T ss_pred CCCeEEEEeccCCHHHHHHHhcCCCeEEEEcCCHHHHHHHHHHHHhcC--------------CCeEEEecCHHHhh-ccc
Confidence 567999999999999998888766689999999999999998776554 35777777765431 124
Q ss_pred CCCCCCEEEE-ccccc----CCCChHHHHHHHHHHhccCCCCc
Q 038343 102 SAFVPEIILG-ADILY----DRSCFPDLVRILAILLNRRKSVS 139 (191)
Q Consensus 102 ~~~~fDvIi~-~d~ly----~~~~~~~ll~~l~~ll~~~g~~~ 139 (191)
.+++||+|++ ...+. +....+.+++.+.++|||||...
T Consensus 125 ~~~~fD~V~~d~~~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~ 167 (236)
T 1zx0_A 125 PDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLT 167 (236)
T ss_dssp CTTCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEE
T ss_pred CCCceEEEEECCcccchhhhhhhhHHHHHHHHHHhcCCCeEEE
Confidence 4578999998 43321 22234477999999999998644
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.44 E-value=4.5e-13 Score=103.43 Aligned_cols=99 Identities=11% Similarity=0.037 Sum_probs=81.4
Q ss_pred CCCCCcEEEeCCCccHHHHHHHhc--CCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCC
Q 038343 20 IFSNKSCFEVGSGVGLVGICLAHV--KASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESAS 97 (191)
Q Consensus 20 ~~~~~~VLElG~GtG~~~~~la~~--g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~ 97 (191)
..++.+|||+|||+|..+..+++. +. +|+++|+++.+++.++++ . .++.+...|..+..
T Consensus 31 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~-~v~~~D~s~~~~~~a~~~----~--------------~~~~~~~~d~~~~~ 91 (259)
T 2p35_A 31 LERVLNGYDLGCGPGNSTELLTDRYGVN-VITGIDSDDDMLEKAADR----L--------------PNTNFGKADLATWK 91 (259)
T ss_dssp CSCCSSEEEETCTTTHHHHHHHHHHCTT-SEEEEESCHHHHHHHHHH----S--------------TTSEEEECCTTTCC
T ss_pred CCCCCEEEEecCcCCHHHHHHHHhCCCC-EEEEEECCHHHHHHHHHh----C--------------CCcEEEECChhhcC
Confidence 446789999999999999987776 44 899999999999998876 1 23567777766543
Q ss_pred cCCCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCccc
Q 038343 98 ESGLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVSSS 141 (191)
Q Consensus 98 ~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~~~ 141 (191)
.+++||+|+++.++++..+...+++.+.++|+|||.....
T Consensus 92 ----~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~ 131 (259)
T 2p35_A 92 ----PAQKADLLYANAVFQWVPDHLAVLSQLMDQLESGGVLAVQ 131 (259)
T ss_dssp ----CSSCEEEEEEESCGGGSTTHHHHHHHHGGGEEEEEEEEEE
T ss_pred ----ccCCcCEEEEeCchhhCCCHHHHHHHHHHhcCCCeEEEEE
Confidence 3468999999999999999999999999999999865543
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=2.4e-13 Score=106.86 Aligned_cols=99 Identities=12% Similarity=0.167 Sum_probs=81.3
Q ss_pred CCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCCC
Q 038343 22 SNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESGL 101 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~~ 101 (191)
++.+|||+|||+|..++.+++.++.+|+++|+++.+++.+++|++.|+.. +++.+...|..+...
T Consensus 125 ~~~~VLDlgcG~G~~~~~la~~~~~~V~~vD~s~~~~~~a~~n~~~n~~~------------~~v~~~~~D~~~~~~--- 189 (278)
T 2frn_A 125 PDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVE------------DRMSAYNMDNRDFPG--- 189 (278)
T ss_dssp TTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCT------------TTEEEECSCTTTCCC---
T ss_pred CCCEEEEecccCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHcCCC------------ceEEEEECCHHHhcc---
Confidence 57899999999999999999988767999999999999999999999865 357778888765532
Q ss_pred CCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCcc
Q 038343 102 SAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVSS 140 (191)
Q Consensus 102 ~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~~ 140 (191)
..+||+|++... .....+++.+.++|+|||....
T Consensus 190 -~~~fD~Vi~~~p----~~~~~~l~~~~~~LkpgG~l~~ 223 (278)
T 2frn_A 190 -ENIADRILMGYV----VRTHEFIPKALSIAKDGAIIHY 223 (278)
T ss_dssp -CSCEEEEEECCC----SSGGGGHHHHHHHEEEEEEEEE
T ss_pred -cCCccEEEECCc----hhHHHHHHHHHHHCCCCeEEEE
Confidence 468999998422 3457789999999999975443
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=1.6e-13 Score=107.98 Aligned_cols=106 Identities=10% Similarity=-0.091 Sum_probs=84.8
Q ss_pred CCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCC
Q 038343 21 FSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESG 100 (191)
Q Consensus 21 ~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~ 100 (191)
.++.+|||+|||+|..+..+++.+..+|+++|+++.+++.+++++..++.. .++.+...|..+...
T Consensus 63 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~------------~~v~~~~~d~~~~~~-- 128 (298)
T 1ri5_A 63 KRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRR------------FKVFFRAQDSYGRHM-- 128 (298)
T ss_dssp CTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCS------------SEEEEEESCTTTSCC--
T ss_pred CCCCeEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCC------------ccEEEEECCcccccc--
Confidence 367799999999998888788877669999999999999999988776543 357778887765421
Q ss_pred CCCCCCCEEEEcccccC----CCChHHHHHHHHHHhccCCCCcc
Q 038343 101 LSAFVPEIILGADILYD----RSCFPDLVRILAILLNRRKSVSS 140 (191)
Q Consensus 101 ~~~~~fDvIi~~d~ly~----~~~~~~ll~~l~~ll~~~g~~~~ 140 (191)
..+++||+|++..++++ ..+...+++.+.++|+|||....
T Consensus 129 ~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 172 (298)
T 1ri5_A 129 DLGKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIM 172 (298)
T ss_dssp CCSSCEEEEEEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEE
T ss_pred CCCCCcCEEEECchhhhhcCCHHHHHHHHHHHHHhcCCCCEEEE
Confidence 13468999999999865 45678899999999999986543
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=1.7e-14 Score=110.65 Aligned_cols=99 Identities=13% Similarity=0.078 Sum_probs=81.3
Q ss_pred CCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCCC
Q 038343 22 SNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESGL 101 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~~ 101 (191)
++.+|||+|||+|..++.+++.+. +|+++|+++.+++.+++|+..+++. .++.+...|+.+..
T Consensus 78 ~~~~vLD~gcG~G~~~~~la~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~------------~~~~~~~~d~~~~~---- 140 (241)
T 3gdh_A 78 KCDVVVDAFCGVGGNTIQFALTGM-RVIAIDIDPVKIALARNNAEVYGIA------------DKIEFICGDFLLLA---- 140 (241)
T ss_dssp CCSEEEETTCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCG------------GGEEEEESCHHHHG----
T ss_pred CCCEEEECccccCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHcCCC------------cCeEEEECChHHhc----
Confidence 678999999999999999999874 9999999999999999999988753 35777777765432
Q ss_pred CCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCC
Q 038343 102 SAFVPEIILGADILYDRSCFPDLVRILAILLNRRKS 137 (191)
Q Consensus 102 ~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~ 137 (191)
...+||+|++..++++.......+..+.++|+|+|.
T Consensus 141 ~~~~~D~v~~~~~~~~~~~~~~~~~~~~~~L~pgG~ 176 (241)
T 3gdh_A 141 SFLKADVVFLSPPWGGPDYATAETFDIRTMMSPDGF 176 (241)
T ss_dssp GGCCCSEEEECCCCSSGGGGGSSSBCTTTSCSSCHH
T ss_pred ccCCCCEEEECCCcCCcchhhhHHHHHHhhcCCcce
Confidence 235899999988887776666667778888888875
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=2.4e-13 Score=105.46 Aligned_cols=128 Identities=12% Similarity=-0.008 Sum_probs=84.3
Q ss_pred HHHHHHhhCCCCCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhc----CCCCcccccccCCCC
Q 038343 9 LLSEFILSFPEIFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQ----LSTDTSLLESYEDPN 84 (191)
Q Consensus 9 ~L~~~l~~~~~~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~----~~~~~~~~~~~~~~~ 84 (191)
.|.+++.......++.+|||+|||+|..+..+++.|. +|+++|+++.+++.++++..... ...............
T Consensus 55 ~l~~~~~~~~~~~~~~~vLD~GCG~G~~~~~La~~G~-~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (252)
T 2gb4_A 55 LLKKHLDTFLKGQSGLRVFFPLCGKAIEMKWFADRGH-TVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSG 133 (252)
T ss_dssp HHHHHHHHHHTTCCSCEEEETTCTTCTHHHHHHHTTC-EEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTS
T ss_pred HHHHHHHHhccCCCCCeEEEeCCCCcHHHHHHHHCCC-eEEEEECCHHHHHHHHHhcccccccccccccccccccccCCC
Confidence 4555554322223577999999999999999999988 89999999999998875432100 000000000000013
Q ss_pred eeEEEeecCCCCCcCCCCCCCCCEEEEcccccCCC--ChHHHHHHHHHHhccCCCCc
Q 038343 85 VVQCVHLPWESASESGLSAFVPEIILGADILYDRS--CFPDLVRILAILLNRRKSVS 139 (191)
Q Consensus 85 ~i~~~~ldw~~~~~~~~~~~~fDvIi~~d~ly~~~--~~~~ll~~l~~ll~~~g~~~ 139 (191)
++.+...|..+.... ..++||+|++..++++.. ....+++.+.++|+|||...
T Consensus 134 ~i~~~~~D~~~l~~~--~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~LkpGG~l~ 188 (252)
T 2gb4_A 134 SISLYCCSIFDLPRA--NIGKFDRIWDRGALVAINPGDHDRYADIILSLLRKEFQYL 188 (252)
T ss_dssp SEEEEESCTTTGGGG--CCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEE
T ss_pred ceEEEECccccCCcc--cCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCCCeEEE
Confidence 577788776554321 126899999988877653 45678999999999998753
|
| >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=2.1e-13 Score=105.68 Aligned_cols=102 Identities=15% Similarity=0.145 Sum_probs=80.4
Q ss_pred CCCcEEEeCCCccHHHHHHHhc-CCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCC
Q 038343 22 SNKSCFEVGSGVGLVGICLAHV-KASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESG 100 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~-g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~ 100 (191)
++.+|||+|||+|..++.++.. +..+|+++|+++.+++.+++|++.+++. ++.+...++.+.....
T Consensus 80 ~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l~-------------~v~~~~~d~~~~~~~~ 146 (249)
T 3g89_A 80 GPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLK-------------GARALWGRAEVLAREA 146 (249)
T ss_dssp SSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCS-------------SEEEEECCHHHHTTST
T ss_pred CCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCC-------------ceEEEECcHHHhhccc
Confidence 5779999999999999988876 3459999999999999999999988764 3777777765432211
Q ss_pred CCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCcc
Q 038343 101 LSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVSS 140 (191)
Q Consensus 101 ~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~~ 140 (191)
...++||+|++..+ ...+.+++.+.++|+|||....
T Consensus 147 ~~~~~fD~I~s~a~----~~~~~ll~~~~~~LkpgG~l~~ 182 (249)
T 3g89_A 147 GHREAYARAVARAV----APLCVLSELLLPFLEVGGAAVA 182 (249)
T ss_dssp TTTTCEEEEEEESS----CCHHHHHHHHGGGEEEEEEEEE
T ss_pred ccCCCceEEEECCc----CCHHHHHHHHHHHcCCCeEEEE
Confidence 12358999998543 4678999999999999986543
|
| >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=4.9e-14 Score=109.12 Aligned_cols=121 Identities=16% Similarity=0.152 Sum_probs=84.1
Q ss_pred CCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcc--c---ccccCC-----------C
Q 038343 20 IFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTS--L---LESYED-----------P 83 (191)
Q Consensus 20 ~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~--~---~~~~~~-----------~ 83 (191)
..++.+|||+|||+|..+..+++.+..+|+++|+++.+++.+++++..+....... . ...... .
T Consensus 54 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 133 (265)
T 2i62_A 54 AVKGELLIDIGSGPTIYQLLSACESFTEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLR 133 (265)
T ss_dssp SCCEEEEEEESCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHHH
T ss_pred ccCCCEEEEECCCccHHHHHHhhcccCeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHhh
Confidence 35678999999999999988888776689999999999999988875432100000 0 000000 0
Q ss_pred Cee-EEEeecCCCCCc-CCCCCCCCCEEEEccccc----CCCChHHHHHHHHHHhccCCCCcc
Q 038343 84 NVV-QCVHLPWESASE-SGLSAFVPEIILGADILY----DRSCFPDLVRILAILLNRRKSVSS 140 (191)
Q Consensus 84 ~~i-~~~~ldw~~~~~-~~~~~~~fDvIi~~d~ly----~~~~~~~ll~~l~~ll~~~g~~~~ 140 (191)
.++ .+...|..+... .....++||+|++..+++ +..+...+++.+.++|+|||....
T Consensus 134 ~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~ 196 (265)
T 2i62_A 134 RAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVM 196 (265)
T ss_dssp HHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred hhheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEE
Confidence 125 677777765432 112226899999999998 656788999999999999986544
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.43 E-value=2.6e-12 Score=96.84 Aligned_cols=103 Identities=11% Similarity=-0.009 Sum_probs=79.2
Q ss_pred CCCcEEEeCCCccHHHHHHHhcC-CCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCC
Q 038343 22 SNKSCFEVGSGVGLVGICLAHVK-ASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESG 100 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~g-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~ 100 (191)
++.+|||+|||+|..++.+++.. ..+|+++|+++.+++.+++|+..+++. ++.+...|+.+.. ..
T Consensus 41 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~~-------------~v~~~~~d~~~~~-~~ 106 (214)
T 1yzh_A 41 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVP-------------NIKLLWVDGSDLT-DY 106 (214)
T ss_dssp CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCS-------------SEEEEECCSSCGG-GT
T ss_pred CCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCCC-------------CEEEEeCCHHHHH-hh
Confidence 36789999999999999888764 348999999999999999999888753 5778888876532 12
Q ss_pred CCCCCCCEEEEcccccCCC--------ChHHHHHHHHHHhccCCCC
Q 038343 101 LSAFVPEIILGADILYDRS--------CFPDLVRILAILLNRRKSV 138 (191)
Q Consensus 101 ~~~~~fDvIi~~d~ly~~~--------~~~~ll~~l~~ll~~~g~~ 138 (191)
+..++||+|++.....+.. ....+++.+.++|+|+|..
T Consensus 107 ~~~~~~D~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l 152 (214)
T 1yzh_A 107 FEDGEIDRLYLNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEI 152 (214)
T ss_dssp SCTTCCSEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEE
T ss_pred cCCCCCCEEEEECCCCccccchhhhccCCHHHHHHHHHHcCCCcEE
Confidence 3456899999874322211 2468999999999999853
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.43 E-value=5e-13 Score=102.12 Aligned_cols=99 Identities=8% Similarity=-0.018 Sum_probs=80.8
Q ss_pred CCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCCC
Q 038343 22 SNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESGL 101 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~~ 101 (191)
++.+|||+|||+|..+..+++.+. +|+++|+++.+++.++++...++. ++.+...|..+.. .
T Consensus 37 ~~~~vLdiG~G~G~~~~~l~~~~~-~~~~~D~s~~~~~~a~~~~~~~~~--------------~~~~~~~d~~~~~---~ 98 (246)
T 1y8c_A 37 VFDDYLDLACGTGNLTENLCPKFK-NTWAVDLSQEMLSEAENKFRSQGL--------------KPRLACQDISNLN---I 98 (246)
T ss_dssp CTTEEEEETCTTSTTHHHHGGGSS-EEEEECSCHHHHHHHHHHHHHTTC--------------CCEEECCCGGGCC---C
T ss_pred CCCeEEEeCCCCCHHHHHHHHCCC-cEEEEECCHHHHHHHHHHHhhcCC--------------CeEEEecccccCC---c
Confidence 677999999999999998888876 899999999999999998876652 3566666655432 2
Q ss_pred CCCCCCEEEEcc-cccCC---CChHHHHHHHHHHhccCCCCc
Q 038343 102 SAFVPEIILGAD-ILYDR---SCFPDLVRILAILLNRRKSVS 139 (191)
Q Consensus 102 ~~~~fDvIi~~d-~ly~~---~~~~~ll~~l~~ll~~~g~~~ 139 (191)
. ++||+|++.. ++++. .+...+++.+.++|+|+|...
T Consensus 99 ~-~~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~ 139 (246)
T 1y8c_A 99 N-RKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFI 139 (246)
T ss_dssp S-CCEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEE
T ss_pred c-CCceEEEEcCccccccCCHHHHHHHHHHHHHhcCCCcEEE
Confidence 2 6799999997 99887 667889999999999997533
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.42 E-value=7.4e-13 Score=99.32 Aligned_cols=106 Identities=16% Similarity=0.072 Sum_probs=81.7
Q ss_pred HHHhhCCCCCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEee
Q 038343 12 EFILSFPEIFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHL 91 (191)
Q Consensus 12 ~~l~~~~~~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~l 91 (191)
..+.......++.+|||+|||+|..+..+++.+. +|+++|+++.+++.+++++..++.. ++.+...
T Consensus 67 ~~~~~~l~~~~~~~vLdiG~G~G~~~~~la~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~-------------~v~~~~~ 132 (210)
T 3lbf_A 67 ARMTELLELTPQSRVLEIGTGSGYQTAILAHLVQ-HVCSVERIKGLQWQARRRLKNLDLH-------------NVSTRHG 132 (210)
T ss_dssp HHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHSS-EEEEEESCHHHHHHHHHHHHHTTCC-------------SEEEEES
T ss_pred HHHHHhcCCCCCCEEEEEcCCCCHHHHHHHHhCC-EEEEEecCHHHHHHHHHHHHHcCCC-------------ceEEEEC
Confidence 3333333345788999999999999998888854 9999999999999999999887643 4777777
Q ss_pred cCCCCCcCCCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCcc
Q 038343 92 PWESASESGLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVSS 140 (191)
Q Consensus 92 dw~~~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~~ 140 (191)
|+.+... ..++||+|++..++++... .+.++|+|+|....
T Consensus 133 d~~~~~~---~~~~~D~i~~~~~~~~~~~------~~~~~L~pgG~lv~ 172 (210)
T 3lbf_A 133 DGWQGWQ---ARAPFDAIIVTAAPPEIPT------ALMTQLDEGGILVL 172 (210)
T ss_dssp CGGGCCG---GGCCEEEEEESSBCSSCCT------HHHHTEEEEEEEEE
T ss_pred CcccCCc---cCCCccEEEEccchhhhhH------HHHHhcccCcEEEE
Confidence 7655332 2368999999988876653 57899999986443
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=99.42 E-value=1.4e-12 Score=103.74 Aligned_cols=110 Identities=12% Similarity=-0.033 Sum_probs=73.7
Q ss_pred CCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCC----
Q 038343 22 SNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESAS---- 97 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~---- 97 (191)
++.+|||||||+|.....++..+..+|+++|+++.+++.+++.....+..... ..-.+.+...+.....
T Consensus 48 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~-------~~~~~~f~~~d~~~d~~~~~ 120 (302)
T 2vdw_A 48 NKRKVLAIDFGNGADLEKYFYGEIALLVATDPDADAIARGNERYNKLNSGIKT-------KYYKFDYIQETIRSDTFVSS 120 (302)
T ss_dssp SCCEEEETTCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCC-----------CCCEEEEEECCTTSSSHHHH
T ss_pred CCCeEEEEecCCcHhHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhccccccc-------cccccchhhhhcccchhhhh
Confidence 46799999999996444344444458999999999999999877654421000 0002344444442211
Q ss_pred -cCCCCCCCCCEEEEcccccC---CCChHHHHHHHHHHhccCCCC
Q 038343 98 -ESGLSAFVPEIILGADILYD---RSCFPDLVRILAILLNRRKSV 138 (191)
Q Consensus 98 -~~~~~~~~fDvIi~~d~ly~---~~~~~~ll~~l~~ll~~~g~~ 138 (191)
...+.+++||+|++..++++ ......+++.+.++|+|||..
T Consensus 121 l~~~~~~~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~~ 165 (302)
T 2vdw_A 121 VREVFYFGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKV 165 (302)
T ss_dssp HHTTCCSSCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEEEE
T ss_pred hhccccCCCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCCEE
Confidence 11134568999999888853 356789999999999999864
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.42 E-value=1.3e-13 Score=109.02 Aligned_cols=119 Identities=14% Similarity=0.097 Sum_probs=82.5
Q ss_pred CCCCCcEEEeCCCccHHHHHHHhc-CCCeEEEEcCChHHHHHHHHHHHHhcCCCCcc-----------------------
Q 038343 20 IFSNKSCFEVGSGVGLVGICLAHV-KASKVTLTDGDHLTLANMRSNLELNQLSTDTS----------------------- 75 (191)
Q Consensus 20 ~~~~~~VLElG~GtG~~~~~la~~-g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~----------------------- 75 (191)
.+++++|||+|||+|..++.+++. +..+|+++|+++.+++.+++++..+.......
T Consensus 44 ~~~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (292)
T 3g07_A 44 WFRGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKR 123 (292)
T ss_dssp GTTTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC---------------------------------
T ss_pred hcCCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhhhhhcccccccccccccccccccccccccc
Confidence 347889999999999999987775 45699999999999999998876543220000
Q ss_pred ----------------------cccccCCCCeeEEEeecCCCCCcC--CCCCCCCCEEEEcccccCC------CChHHHH
Q 038343 76 ----------------------LLESYEDPNVVQCVHLPWESASES--GLSAFVPEIILGADILYDR------SCFPDLV 125 (191)
Q Consensus 76 ----------------------~~~~~~~~~~i~~~~ldw~~~~~~--~~~~~~fDvIi~~d~ly~~------~~~~~ll 125 (191)
.........++.+...|+...... ....++||+|++..++.+. .....++
T Consensus 124 ~~~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~~l 203 (292)
T 3g07_A 124 SCFPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRMF 203 (292)
T ss_dssp ------------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred ccccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHHHHHHHH
Confidence 000001124688888888754311 1245689999999988443 3788899
Q ss_pred HHHHHHhccCCCC
Q 038343 126 RILAILLNRRKSV 138 (191)
Q Consensus 126 ~~l~~ll~~~g~~ 138 (191)
+.+.++|+|||..
T Consensus 204 ~~~~~~LkpGG~l 216 (292)
T 3g07_A 204 RRIYRHLRPGGIL 216 (292)
T ss_dssp HHHHHHEEEEEEE
T ss_pred HHHHHHhCCCcEE
Confidence 9999999999753
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=99.42 E-value=6.4e-13 Score=101.43 Aligned_cols=98 Identities=15% Similarity=0.004 Sum_probs=74.1
Q ss_pred CCCcEEEeCCCccHHHHHHHhcCC-CeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCC
Q 038343 22 SNKSCFEVGSGVGLVGICLAHVKA-SKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESG 100 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~g~-~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~ 100 (191)
++.+|+|+|||+|.+++.+++.+. .+|+++|+++.+++.+++|++.|++. .++.+...|+.+...
T Consensus 21 ~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl~------------~~I~~~~gD~l~~~~-- 86 (230)
T 3lec_A 21 KGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLT------------SKIDVRLANGLSAFE-- 86 (230)
T ss_dssp TTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTCT------------TTEEEEECSGGGGCC--
T ss_pred CCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC------------CcEEEEECchhhccc--
Confidence 567999999999999999999874 48999999999999999999999875 468888888654431
Q ss_pred CCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCC
Q 038343 101 LSAFVPEIILGADILYDRSCFPDLVRILAILLNRRK 136 (191)
Q Consensus 101 ~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g 136 (191)
+..+||+|+.+.+-- ..+..++......|++++
T Consensus 87 -~~~~~D~IviaGmGg--~lI~~IL~~~~~~l~~~~ 119 (230)
T 3lec_A 87 -EADNIDTITICGMGG--RLIADILNNDIDKLQHVK 119 (230)
T ss_dssp -GGGCCCEEEEEEECH--HHHHHHHHHTGGGGTTCC
T ss_pred -cccccCEEEEeCCch--HHHHHHHHHHHHHhCcCC
Confidence 122699987654422 234555666656666554
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.42 E-value=5.9e-13 Score=102.17 Aligned_cols=103 Identities=13% Similarity=0.006 Sum_probs=81.3
Q ss_pred CCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcC
Q 038343 20 IFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASES 99 (191)
Q Consensus 20 ~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~ 99 (191)
..++.+|||+|||+|..+..+++.+. +|+++|+++.+++.++++... .++.+...|..+....
T Consensus 54 ~~~~~~vLD~GcG~G~~~~~la~~~~-~v~gvD~s~~~~~~a~~~~~~----------------~~~~~~~~d~~~~~~~ 116 (245)
T 3ggd_A 54 FNPELPLIDFACGNGTQTKFLSQFFP-RVIGLDVSKSALEIAAKENTA----------------ANISYRLLDGLVPEQA 116 (245)
T ss_dssp SCTTSCEEEETCTTSHHHHHHHHHSS-CEEEEESCHHHHHHHHHHSCC----------------TTEEEEECCTTCHHHH
T ss_pred cCCCCeEEEEcCCCCHHHHHHHHhCC-CEEEEECCHHHHHHHHHhCcc----------------cCceEEECcccccccc
Confidence 44678999999999999999999877 899999999999999876521 2467777776553211
Q ss_pred C-CC-CCCCCEEEEcccccCCC--ChHHHHHHHHHHhccCCCCc
Q 038343 100 G-LS-AFVPEIILGADILYDRS--CFPDLVRILAILLNRRKSVS 139 (191)
Q Consensus 100 ~-~~-~~~fDvIi~~d~ly~~~--~~~~ll~~l~~ll~~~g~~~ 139 (191)
. +. ...||+|++..++++.. +...+++.+.++|+|||...
T Consensus 117 ~~~~~~~~~d~v~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~ 160 (245)
T 3ggd_A 117 AQIHSEIGDANIYMRTGFHHIPVEKRELLGQSLRILLGKQGAMY 160 (245)
T ss_dssp HHHHHHHCSCEEEEESSSTTSCGGGHHHHHHHHHHHHTTTCEEE
T ss_pred cccccccCccEEEEcchhhcCCHHHHHHHHHHHHHHcCCCCEEE
Confidence 0 10 12499999999999888 78999999999999998533
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=4.8e-13 Score=103.79 Aligned_cols=108 Identities=15% Similarity=0.139 Sum_probs=81.5
Q ss_pred cHHHHHHHHhhCCCCCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCe
Q 038343 6 SSLLLSEFILSFPEIFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNV 85 (191)
Q Consensus 6 ~a~~L~~~l~~~~~~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~ 85 (191)
.+....+++... ..++.+|||+|||+|.+++.+++.|+ +|+++|+++.+++.+++|+..|+..
T Consensus 106 tt~~~~~~l~~~--~~~~~~VLDiGcG~G~l~~~la~~g~-~v~gvDi~~~~v~~a~~n~~~~~~~-------------- 168 (254)
T 2nxc_A 106 TTRLALKALARH--LRPGDKVLDLGTGSGVLAIAAEKLGG-KALGVDIDPMVLPQAEANAKRNGVR-------------- 168 (254)
T ss_dssp HHHHHHHHHHHH--CCTTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCGGGHHHHHHHHHHTTCC--------------
T ss_pred HHHHHHHHHHHh--cCCCCEEEEecCCCcHHHHHHHHhCC-eEEEEECCHHHHHHHHHHHHHcCCc--------------
Confidence 344445555443 23678999999999999999999988 9999999999999999999988742
Q ss_pred eEEEeecCCCCCcCCCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCC
Q 038343 86 VQCVHLPWESASESGLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKS 137 (191)
Q Consensus 86 i~~~~ldw~~~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~ 137 (191)
+.+...++.+. ++.++||+|+++.+.. ....+++.+.++|+|+|.
T Consensus 169 v~~~~~d~~~~----~~~~~fD~Vv~n~~~~---~~~~~l~~~~~~LkpgG~ 213 (254)
T 2nxc_A 169 PRFLEGSLEAA----LPFGPFDLLVANLYAE---LHAALAPRYREALVPGGR 213 (254)
T ss_dssp CEEEESCHHHH----GGGCCEEEEEEECCHH---HHHHHHHHHHHHEEEEEE
T ss_pred EEEEECChhhc----CcCCCCCEEEECCcHH---HHHHHHHHHHHHcCCCCE
Confidence 45555554332 2235799999864322 367889999999999974
|
| >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.42 E-value=5.8e-14 Score=101.72 Aligned_cols=99 Identities=17% Similarity=0.082 Sum_probs=76.5
Q ss_pred CCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcC-C
Q 038343 22 SNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASES-G 100 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~-~ 100 (191)
++.+|||+|||+|..++.+++.+. +|+++|+++.+++.+++|+..++. ++.+...|+.+.... .
T Consensus 41 ~~~~vLD~GcG~G~~~~~l~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~--------------~~~~~~~d~~~~~~~~~ 105 (171)
T 1ws6_A 41 RRGRFLDPFAGSGAVGLEAASEGW-EAVLVEKDPEAVRLLKENVRRTGL--------------GARVVALPVEVFLPEAK 105 (171)
T ss_dssp TCCEEEEETCSSCHHHHHHHHTTC-EEEEECCCHHHHHHHHHHHHHHTC--------------CCEEECSCHHHHHHHHH
T ss_pred CCCeEEEeCCCcCHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHHcCC--------------ceEEEeccHHHHHHhhh
Confidence 577999999999999999999887 599999999999999999988763 245566655432110 0
Q ss_pred CCCCCCCEEEEcccccCCCChHHHHHHHH--HHhccCCC
Q 038343 101 LSAFVPEIILGADILYDRSCFPDLVRILA--ILLNRRKS 137 (191)
Q Consensus 101 ~~~~~fDvIi~~d~ly~~~~~~~ll~~l~--~ll~~~g~ 137 (191)
....+||+|++..+++ ...+.+++.+. ++|+|+|.
T Consensus 106 ~~~~~~D~i~~~~~~~--~~~~~~~~~~~~~~~L~~gG~ 142 (171)
T 1ws6_A 106 AQGERFTVAFMAPPYA--MDLAALFGELLASGLVEAGGL 142 (171)
T ss_dssp HTTCCEEEEEECCCTT--SCTTHHHHHHHHHTCEEEEEE
T ss_pred ccCCceEEEEECCCCc--hhHHHHHHHHHhhcccCCCcE
Confidence 0123799999976654 67788888888 89999974
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.42 E-value=1.2e-12 Score=100.15 Aligned_cols=120 Identities=8% Similarity=-0.011 Sum_probs=85.4
Q ss_pred ccccHH-HHHHHHhhC---CCCCCCCcEEEeCCCccHHHHHHHhc-CC-CeEEEEcCChHHHHHHHHHHHHhcCCCCccc
Q 038343 3 IWPSSL-LLSEFILSF---PEIFSNKSCFEVGSGVGLVGICLAHV-KA-SKVTLTDGDHLTLANMRSNLELNQLSTDTSL 76 (191)
Q Consensus 3 ~W~~a~-~L~~~l~~~---~~~~~~~~VLElG~GtG~~~~~la~~-g~-~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~ 76 (191)
.|+--. .|+..+... ....+|.+|||+|||+|..+..++.. |. .+|+++|+++.+++.++++++..
T Consensus 54 ~w~p~rsklaa~i~~gl~~l~ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~-------- 125 (233)
T 4df3_A 54 EWNAYRSKLAAALLKGLIELPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDR-------- 125 (233)
T ss_dssp ECCTTTCHHHHHHHTTCSCCCCCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTC--------
T ss_pred eECCCchHHHHHHHhchhhcCCCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhh--------
Confidence 465533 455555442 33568999999999999999988874 44 48999999999999988765432
Q ss_pred ccccCCCCeeEEEeecCCCCCcCCCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCc
Q 038343 77 LESYEDPNVVQCVHLPWESASESGLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVS 139 (191)
Q Consensus 77 ~~~~~~~~~i~~~~ldw~~~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~ 139 (191)
.++.....+-..+.........+|+|++ | ++++.+...++..++++|||||...
T Consensus 126 -------~ni~~V~~d~~~p~~~~~~~~~vDvVf~-d-~~~~~~~~~~l~~~~r~LKpGG~lv 179 (233)
T 4df3_A 126 -------RNIFPILGDARFPEKYRHLVEGVDGLYA-D-VAQPEQAAIVVRNARFFLRDGGYML 179 (233)
T ss_dssp -------TTEEEEESCTTCGGGGTTTCCCEEEEEE-C-CCCTTHHHHHHHHHHHHEEEEEEEE
T ss_pred -------cCeeEEEEeccCccccccccceEEEEEE-e-ccCChhHHHHHHHHHHhccCCCEEE
Confidence 2355555555544333334567999886 3 5566677889999999999998644
|
| >1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.41 E-value=5.6e-13 Score=102.38 Aligned_cols=100 Identities=15% Similarity=0.112 Sum_probs=77.3
Q ss_pred CCCcEEEeCCCccHHHHHHHhc-CCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCC
Q 038343 22 SNKSCFEVGSGVGLVGICLAHV-KASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESG 100 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~-g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~ 100 (191)
++.+|||+|||+|..++.++.. ...+|+++|+++.+++.+++|++.++.. ++.+...|+.+.....
T Consensus 70 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-------------~v~~~~~d~~~~~~~~ 136 (240)
T 1xdz_A 70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLE-------------NTTFCHDRAETFGQRK 136 (240)
T ss_dssp GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCS-------------SEEEEESCHHHHTTCT
T ss_pred CCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-------------CEEEEeccHHHhcccc
Confidence 5779999999999999988853 2348999999999999999999988753 3677777654322100
Q ss_pred CCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCC
Q 038343 101 LSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSV 138 (191)
Q Consensus 101 ~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~ 138 (191)
...++||+|++.. ..+...+++.+.++|+|+|..
T Consensus 137 ~~~~~fD~V~~~~----~~~~~~~l~~~~~~LkpgG~l 170 (240)
T 1xdz_A 137 DVRESYDIVTARA----VARLSVLSELCLPLVKKNGLF 170 (240)
T ss_dssp TTTTCEEEEEEEC----CSCHHHHHHHHGGGEEEEEEE
T ss_pred cccCCccEEEEec----cCCHHHHHHHHHHhcCCCCEE
Confidence 0135899999865 356899999999999999753
|
| >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=2.9e-13 Score=102.79 Aligned_cols=103 Identities=9% Similarity=-0.001 Sum_probs=76.8
Q ss_pred CCCcEEEeCCCccHHHHHHHhcCC-CeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCC
Q 038343 22 SNKSCFEVGSGVGLVGICLAHVKA-SKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESG 100 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~g~-~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~ 100 (191)
++.+|||||||+|..++.+++... ..|+++|+++.+++.+++++..+++. ++.+...|..+.....
T Consensus 34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l~-------------nv~~~~~Da~~~l~~~ 100 (218)
T 3dxy_A 34 EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGLS-------------NLRVMCHDAVEVLHKM 100 (218)
T ss_dssp CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTCS-------------SEEEECSCHHHHHHHH
T ss_pred CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCCC-------------cEEEEECCHHHHHHHH
Confidence 456899999999999998887643 48999999999999999999887754 4677766643321111
Q ss_pred CCCCCCCEEEEc--ccccCCCCh------HHHHHHHHHHhccCCC
Q 038343 101 LSAFVPEIILGA--DILYDRSCF------PDLVRILAILLNRRKS 137 (191)
Q Consensus 101 ~~~~~fDvIi~~--d~ly~~~~~------~~ll~~l~~ll~~~g~ 137 (191)
+.+++||.|++. +..+..... ..+++.+.++|+|||.
T Consensus 101 ~~~~~~d~v~~~~~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~ 145 (218)
T 3dxy_A 101 IPDNSLRMVQLFFPDPWHKARHNKRRIVQVPFAELVKSKLQLGGV 145 (218)
T ss_dssp SCTTCEEEEEEESCCCCCSGGGGGGSSCSHHHHHHHHHHEEEEEE
T ss_pred cCCCChheEEEeCCCCccchhhhhhhhhhHHHHHHHHHHcCCCcE
Confidence 345789999986 443332222 3699999999999975
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=6.7e-13 Score=101.07 Aligned_cols=97 Identities=13% Similarity=-0.009 Sum_probs=74.7
Q ss_pred CCCcEEEeCCCccHHHHHHHhcCC-CeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCC
Q 038343 22 SNKSCFEVGSGVGLVGICLAHVKA-SKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESG 100 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~g~-~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~ 100 (191)
++.+|||+|||+|.+++.+++.+. .+|+++|+++.+++.+++|++.|++. +++.+...|+.+..
T Consensus 15 ~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~------------~~i~~~~~d~l~~l--- 79 (225)
T 3kr9_A 15 QGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLK------------EKIQVRLANGLAAF--- 79 (225)
T ss_dssp TTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCT------------TTEEEEECSGGGGC---
T ss_pred CCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC------------ceEEEEECchhhhc---
Confidence 567999999999999999999874 48999999999999999999999975 46888888874332
Q ss_pred CCCC-CCCEEEEcccccCCCChHHHHHHHHHHhccCC
Q 038343 101 LSAF-VPEIILGADILYDRSCFPDLVRILAILLNRRK 136 (191)
Q Consensus 101 ~~~~-~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g 136 (191)
+.. +||+|+.+.+- -..+..++......|++++
T Consensus 80 -~~~~~~D~IviaG~G--g~~i~~Il~~~~~~L~~~~ 113 (225)
T 3kr9_A 80 -EETDQVSVITIAGMG--GRLIARILEEGLGKLANVE 113 (225)
T ss_dssp -CGGGCCCEEEEEEEC--HHHHHHHHHHTGGGCTTCC
T ss_pred -ccCcCCCEEEEcCCC--hHHHHHHHHHHHHHhCCCC
Confidence 222 69988865541 1225566777677777653
|
| >2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 | Back alignment and structure |
|---|
Probab=99.41 E-value=1.2e-12 Score=101.16 Aligned_cols=106 Identities=12% Similarity=0.195 Sum_probs=71.5
Q ss_pred CCCcEEEeCCCccHHHHHHHhc-CCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCC
Q 038343 22 SNKSCFEVGSGVGLVGICLAHV-KASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESG 100 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~-g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~ 100 (191)
++.+|||+|||+|..++.+++. ...+|+++|+++.+++.+++|+..+++. .++.+...|..+.....
T Consensus 65 ~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~------------~~v~~~~~d~~~~~~~~ 132 (254)
T 2h00_A 65 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLS------------DLIKVVKVPQKTLLMDA 132 (254)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCT------------TTEEEEECCTTCSSTTT
T ss_pred CCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcCCC------------ccEEEEEcchhhhhhhh
Confidence 5679999999999888877664 2249999999999999999999988754 35777877754321111
Q ss_pred CC---CCCCCEEEEcccccCCC-C--------------hHHHHHHHHHHhccCCCCc
Q 038343 101 LS---AFVPEIILGADILYDRS-C--------------FPDLVRILAILLNRRKSVS 139 (191)
Q Consensus 101 ~~---~~~fDvIi~~d~ly~~~-~--------------~~~ll~~l~~ll~~~g~~~ 139 (191)
+. +.+||+|+++.+++... . ...++..+.++|+|+|...
T Consensus 133 ~~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG~l~ 189 (254)
T 2h00_A 133 LKEESEIIYDFCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELE 189 (254)
T ss_dssp STTCCSCCBSEEEECCCCC-------------------------CTTTTHHHHTHHH
T ss_pred hhcccCCcccEEEECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecCCEEE
Confidence 22 25799999976655432 1 1234566777888887544
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=8.8e-13 Score=105.01 Aligned_cols=112 Identities=11% Similarity=-0.009 Sum_probs=81.2
Q ss_pred CCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCc-CC
Q 038343 22 SNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASE-SG 100 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~-~~ 100 (191)
++.+|||+|||+|..+..+++.+..+|+++|+++.+++.++++...+..... .....++.+...|..+... ..
T Consensus 34 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~------~~~~~~~~~~~~D~~~~~~~~~ 107 (313)
T 3bgv_A 34 RDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRYEDMKNRRD------SEYIFSAEFITADSSKELLIDK 107 (313)
T ss_dssp -CCEEEEETCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHHSSSC------C-CCCEEEEEECCTTTSCSTTT
T ss_pred CCCEEEEECCCCcHHHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhhhccc------ccccceEEEEEecccccchhhh
Confidence 5679999999999888877766556999999999999999988766531000 0001357778888765431 11
Q ss_pred C--CCCCCCEEEEcccccCC----CChHHHHHHHHHHhccCCCCc
Q 038343 101 L--SAFVPEIILGADILYDR----SCFPDLVRILAILLNRRKSVS 139 (191)
Q Consensus 101 ~--~~~~fDvIi~~d~ly~~----~~~~~ll~~l~~ll~~~g~~~ 139 (191)
+ ..++||+|+++.++++. .+...+++.+.++|+|+|...
T Consensus 108 ~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li 152 (313)
T 3bgv_A 108 FRDPQMCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFI 152 (313)
T ss_dssp CSSTTCCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEE
T ss_pred cccCCCCEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEE
Confidence 2 23489999999999765 345689999999999997543
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=99.40 E-value=7.7e-14 Score=104.50 Aligned_cols=117 Identities=19% Similarity=0.127 Sum_probs=64.6
Q ss_pred HHHHHHHHhhC-CCCCCCCcEEEeCCCccHHHHHHHhcCC-CeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCC
Q 038343 7 SLLLSEFILSF-PEIFSNKSCFEVGSGVGLVGICLAHVKA-SKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPN 84 (191)
Q Consensus 7 a~~L~~~l~~~-~~~~~~~~VLElG~GtG~~~~~la~~g~-~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~ 84 (191)
+..+.+++... ....++.+|||+|||+|..++.+++.+. .+|+++|+++.+++.+++|+..++.
T Consensus 14 ~~~~~~~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-------------- 79 (215)
T 4dzr_A 14 TEVLVEEAIRFLKRMPSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGA-------------- 79 (215)
T ss_dssp HHHHHHHHHHHHTTCCTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC------------------------------
T ss_pred HHHHHHHHHHHhhhcCCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhCC--------------
Confidence 34444544443 2224678999999999999998888743 3899999999999999999887653
Q ss_pred eeEEEeecCCCCCcC-CCCCCCCCEEEEcccccCCCCh--------------------------HHHHHHHHHHhccCCC
Q 038343 85 VVQCVHLPWESASES-GLSAFVPEIILGADILYDRSCF--------------------------PDLVRILAILLNRRKS 137 (191)
Q Consensus 85 ~i~~~~ldw~~~~~~-~~~~~~fDvIi~~d~ly~~~~~--------------------------~~ll~~l~~ll~~~g~ 137 (191)
++.+...|+.+.... ....++||+|+++..++..... ..+++.+.++|+|+|.
T Consensus 80 ~~~~~~~d~~~~~~~~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~ 159 (215)
T 4dzr_A 80 VVDWAAADGIEWLIERAERGRPWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRA 159 (215)
T ss_dssp ---CCHHHHHHHHHHHHHTTCCBSEEEECCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSE
T ss_pred ceEEEEcchHhhhhhhhhccCcccEEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCe
Confidence 234445554331110 0012689999997665543322 6778888899999986
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.40 E-value=3.3e-13 Score=107.16 Aligned_cols=106 Identities=10% Similarity=-0.093 Sum_probs=85.2
Q ss_pred CCCCcEEEeCCCccHHHHHHH--hcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCc
Q 038343 21 FSNKSCFEVGSGVGLVGICLA--HVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASE 98 (191)
Q Consensus 21 ~~~~~VLElG~GtG~~~~~la--~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~ 98 (191)
.++.+|||+|||+|..++.++ .....+|+++|+++.+++.+++++..++.. .++.+...|+.+..
T Consensus 117 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~------------~~v~~~~~d~~~~~- 183 (305)
T 3ocj_A 117 RPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALA------------GQITLHRQDAWKLD- 183 (305)
T ss_dssp CTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTG------------GGEEEEECCGGGCC-
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCC------------CceEEEECchhcCC-
Confidence 367799999999999998774 333449999999999999999998877654 35788888876543
Q ss_pred CCCCCCCCCEEEEcccccCCCChHH---HHHHHHHHhccCCCCcccc
Q 038343 99 SGLSAFVPEIILGADILYDRSCFPD---LVRILAILLNRRKSVSSSR 142 (191)
Q Consensus 99 ~~~~~~~fDvIi~~d~ly~~~~~~~---ll~~l~~ll~~~g~~~~~~ 142 (191)
+. ++||+|++..++++..+.+. +++.+.++|+|||......
T Consensus 184 --~~-~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 227 (305)
T 3ocj_A 184 --TR-EGYDLLTSNGLNIYEPDDARVTELYRRFWQALKPGGALVTSF 227 (305)
T ss_dssp --CC-SCEEEEECCSSGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEC
T ss_pred --cc-CCeEEEEECChhhhcCCHHHHHHHHHHHHHhcCCCeEEEEEe
Confidence 23 68999999999998877665 7999999999998665433
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=4.6e-12 Score=99.98 Aligned_cols=101 Identities=14% Similarity=0.113 Sum_probs=79.0
Q ss_pred CCCCCCcEEEeCCCcc-HHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCC
Q 038343 19 EIFSNKSCFEVGSGVG-LVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESAS 97 (191)
Q Consensus 19 ~~~~~~~VLElG~GtG-~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~ 97 (191)
...++.+|||+|||+| ..++.+++....+|+++|+++++++.++++++..+.. ++.+...|..+.
T Consensus 119 ~l~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl~-------------~v~~v~gDa~~l- 184 (298)
T 3fpf_A 119 RFRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGVD-------------GVNVITGDETVI- 184 (298)
T ss_dssp TCCTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTCC-------------SEEEEESCGGGG-
T ss_pred CCCCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCCC-------------CeEEEECchhhC-
Confidence 3457889999999988 5667777743349999999999999999999887642 467777665432
Q ss_pred cCCCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCcc
Q 038343 98 ESGLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVSS 140 (191)
Q Consensus 98 ~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~~ 140 (191)
++++||+|+.+.. ..+...+++.+.++|+|||....
T Consensus 185 ----~d~~FDvV~~~a~---~~d~~~~l~el~r~LkPGG~Lvv 220 (298)
T 3fpf_A 185 ----DGLEFDVLMVAAL---AEPKRRVFRNIHRYVDTETRIIY 220 (298)
T ss_dssp ----GGCCCSEEEECTT---CSCHHHHHHHHHHHCCTTCEEEE
T ss_pred ----CCCCcCEEEECCC---ccCHHHHHHHHHHHcCCCcEEEE
Confidence 2468999998654 46788999999999999986553
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.40 E-value=5.7e-13 Score=102.98 Aligned_cols=101 Identities=19% Similarity=0.127 Sum_probs=77.7
Q ss_pred CCCcEEEeCCCccHHHHHHHhc-C-CCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcC
Q 038343 22 SNKSCFEVGSGVGLVGICLAHV-K-ASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASES 99 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~-g-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~ 99 (191)
++.+|||+|||+|..++.+++. + ..+|+++|+++.+++.++++++.++.. .++.+...|..+....
T Consensus 63 ~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~------------~~v~~~~~d~~~~l~~ 130 (248)
T 3tfw_A 63 QAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVD------------QRVTLREGPALQSLES 130 (248)
T ss_dssp TCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCT------------TTEEEEESCHHHHHHT
T ss_pred CCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC------------CcEEEEEcCHHHHHHh
Confidence 5779999999999999988875 2 349999999999999999999988754 4577777765432111
Q ss_pred CCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCC
Q 038343 100 GLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKS 137 (191)
Q Consensus 100 ~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~ 137 (191)
....++||+|++.- .......+++.+.++|+|||.
T Consensus 131 ~~~~~~fD~V~~d~---~~~~~~~~l~~~~~~LkpGG~ 165 (248)
T 3tfw_A 131 LGECPAFDLIFIDA---DKPNNPHYLRWALRYSRPGTL 165 (248)
T ss_dssp CCSCCCCSEEEECS---CGGGHHHHHHHHHHTCCTTCE
T ss_pred cCCCCCeEEEEECC---chHHHHHHHHHHHHhcCCCeE
Confidence 11234899999732 345677899999999999984
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.39 E-value=9.9e-13 Score=101.22 Aligned_cols=100 Identities=13% Similarity=0.042 Sum_probs=77.9
Q ss_pred CCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCC
Q 038343 21 FSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESG 100 (191)
Q Consensus 21 ~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~ 100 (191)
.++.+|||+|||+|..+..+++.|. +|+++|+++.+++.+++++..++. ++.+...|+.+..
T Consensus 40 ~~~~~vLDlGcG~G~~~~~l~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~--------------~v~~~~~d~~~~~--- 101 (252)
T 1wzn_A 40 REVRRVLDLACGTGIPTLELAERGY-EVVGLDLHEEMLRVARRKAKERNL--------------KIEFLQGDVLEIA--- 101 (252)
T ss_dssp SCCCEEEEETCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC--------------CCEEEESCGGGCC---
T ss_pred cCCCEEEEeCCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHhcCC--------------ceEEEECChhhcc---
Confidence 3567999999999999998888876 899999999999999999877653 3566777765432
Q ss_pred CCCCCCCEEEEc-cccc--CCCChHHHHHHHHHHhccCCCCc
Q 038343 101 LSAFVPEIILGA-DILY--DRSCFPDLVRILAILLNRRKSVS 139 (191)
Q Consensus 101 ~~~~~fDvIi~~-d~ly--~~~~~~~ll~~l~~ll~~~g~~~ 139 (191)
...+||+|++. ..+. .......+++.+.++|+|||...
T Consensus 102 -~~~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li 142 (252)
T 1wzn_A 102 -FKNEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFI 142 (252)
T ss_dssp -CCSCEEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEE
T ss_pred -cCCCccEEEEcCCchhcCCHHHHHHHHHHHHHHcCCCeEEE
Confidence 12579999975 2222 23457889999999999998643
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.39 E-value=1.1e-12 Score=100.92 Aligned_cols=97 Identities=10% Similarity=-0.016 Sum_probs=72.5
Q ss_pred CCCcEEEeCCCccHHHHHHHhcCC-CeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCC
Q 038343 22 SNKSCFEVGSGVGLVGICLAHVKA-SKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESG 100 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~g~-~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~ 100 (191)
++.+|||+|||+|.+++.+++.+. .+|+++|+++.+++.+++|++.|++. +++.+...|+.+...
T Consensus 21 ~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~------------~~I~v~~gD~l~~~~-- 86 (244)
T 3gnl_A 21 KNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLT------------EQIDVRKGNGLAVIE-- 86 (244)
T ss_dssp SSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCT------------TTEEEEECSGGGGCC--
T ss_pred CCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC------------ceEEEEecchhhccC--
Confidence 567999999999999999999874 48999999999999999999999875 468888887654421
Q ss_pred CCCCCCCEEEEcccccCCCChHHHHHHHHHHhccC
Q 038343 101 LSAFVPEIILGADILYDRSCFPDLVRILAILLNRR 135 (191)
Q Consensus 101 ~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~ 135 (191)
+..+||+|+.+.+-- ..+..++......|+++
T Consensus 87 -~~~~~D~IviagmGg--~lI~~IL~~~~~~L~~~ 118 (244)
T 3gnl_A 87 -KKDAIDTIVIAGMGG--TLIRTILEEGAAKLAGV 118 (244)
T ss_dssp -GGGCCCEEEEEEECH--HHHHHHHHHTGGGGTTC
T ss_pred -ccccccEEEEeCCch--HHHHHHHHHHHHHhCCC
Confidence 112599988654321 22445566656666554
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.39 E-value=9.3e-13 Score=103.14 Aligned_cols=97 Identities=12% Similarity=0.059 Sum_probs=79.4
Q ss_pred CCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCC
Q 038343 21 FSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESG 100 (191)
Q Consensus 21 ~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~ 100 (191)
.++.+|||+|||+|..+..++..+. +|+++|+++.+++.++++. . ++.+...|..+..
T Consensus 56 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~--~----------------~~~~~~~d~~~~~--- 113 (279)
T 3ccf_A 56 QPGEFILDLGCGTGQLTEKIAQSGA-EVLGTDNAATMIEKARQNY--P----------------HLHFDVADARNFR--- 113 (279)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHC--T----------------TSCEEECCTTTCC---
T ss_pred CCCCEEEEecCCCCHHHHHHHhCCC-eEEEEECCHHHHHHHHhhC--C----------------CCEEEECChhhCC---
Confidence 3677999999999999998888655 9999999999999988764 1 2455666665432
Q ss_pred CCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCcc
Q 038343 101 LSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVSS 140 (191)
Q Consensus 101 ~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~~ 140 (191)
+ +++||+|++..++++..+...+++.+.++|+|||....
T Consensus 114 ~-~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~ 152 (279)
T 3ccf_A 114 V-DKPLDAVFSNAMLHWVKEPEAAIASIHQALKSGGRFVA 152 (279)
T ss_dssp C-SSCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEE
T ss_pred c-CCCcCEEEEcchhhhCcCHHHHHHHHHHhcCCCcEEEE
Confidence 2 35899999999999999999999999999999986554
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.39 E-value=6.6e-13 Score=111.79 Aligned_cols=113 Identities=18% Similarity=0.175 Sum_probs=86.5
Q ss_pred HHHHHhhCCCCCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEE
Q 038343 10 LSEFILSFPEIFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCV 89 (191)
Q Consensus 10 L~~~l~~~~~~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~ 89 (191)
+.+.+.......++.+|||+|||+|.+++.+++.+..+|+++|+++ +++.++++++.+++. .++.+.
T Consensus 146 ~~~~il~~l~~~~~~~VLDiGcGtG~la~~la~~~~~~V~gvD~s~-~l~~A~~~~~~~gl~------------~~v~~~ 212 (480)
T 3b3j_A 146 YQRAILQNHTDFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKSNNLT------------DRIVVI 212 (480)
T ss_dssp HHHHHHHTGGGTTTCEEEEESCSTTHHHHHHHHTTCSEEEEEECHH-HHHHHHHHHHHTTCT------------TTEEEE
T ss_pred HHHHHHHhhhhcCCCEEEEecCcccHHHHHHHHcCCCEEEEEEcHH-HHHHHHHHHHHcCCC------------CcEEEE
Confidence 3344444444457889999999999999999988777999999987 999999999998864 468888
Q ss_pred eecCCCCCcCCCCCCCCCEEEEcccccCCC--ChHHHHHHHHHHhccCCCCc
Q 038343 90 HLPWESASESGLSAFVPEIILGADILYDRS--CFPDLVRILAILLNRRKSVS 139 (191)
Q Consensus 90 ~ldw~~~~~~~~~~~~fDvIi~~d~ly~~~--~~~~ll~~l~~ll~~~g~~~ 139 (191)
..|+.+.. + .++||+|++..++|+.. .....+..++++|+|+|...
T Consensus 213 ~~d~~~~~---~-~~~fD~Ivs~~~~~~~~~e~~~~~l~~~~~~LkpgG~li 260 (480)
T 3b3j_A 213 PGKVEEVS---L-PEQVDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMF 260 (480)
T ss_dssp ESCTTTCC---C-SSCEEEEECCCCHHHHTCHHHHHHHHHGGGGEEEEEEEE
T ss_pred ECchhhCc---c-CCCeEEEEEeCchHhcCcHHHHHHHHHHHHhcCCCCEEE
Confidence 88887642 1 24799999977767443 33455667788999998654
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=8.9e-13 Score=102.26 Aligned_cols=96 Identities=15% Similarity=-0.066 Sum_probs=77.9
Q ss_pred CCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCCC
Q 038343 22 SNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESGL 101 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~~ 101 (191)
++.+|||+|||+|..+..+++.+. +|+++|+++.+++.++++.. ++.+...|+.+...
T Consensus 50 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~------------------~~~~~~~d~~~~~~--- 107 (263)
T 3pfg_A 50 KAASLLDVACGTGMHLRHLADSFG-TVEGLELSADMLAIARRRNP------------------DAVLHHGDMRDFSL--- 107 (263)
T ss_dssp TCCEEEEETCTTSHHHHHHTTTSS-EEEEEESCHHHHHHHHHHCT------------------TSEEEECCTTTCCC---
T ss_pred CCCcEEEeCCcCCHHHHHHHHcCC-eEEEEECCHHHHHHHHhhCC------------------CCEEEECChHHCCc---
Confidence 467999999999999999998876 89999999999999987632 25667777665432
Q ss_pred CCCCCCEEEEcc-cccCCC---ChHHHHHHHHHHhccCCCCcc
Q 038343 102 SAFVPEIILGAD-ILYDRS---CFPDLVRILAILLNRRKSVSS 140 (191)
Q Consensus 102 ~~~~fDvIi~~d-~ly~~~---~~~~ll~~l~~ll~~~g~~~~ 140 (191)
+++||+|++.. ++++.. +...+++.+.++|+|||...+
T Consensus 108 -~~~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~i 149 (263)
T 3pfg_A 108 -GRRFSAVTCMFSSIGHLAGQAELDAALERFAAHVLPDGVVVV 149 (263)
T ss_dssp -SCCEEEEEECTTGGGGSCHHHHHHHHHHHHHHTEEEEEEEEE
T ss_pred -cCCcCEEEEcCchhhhcCCHHHHHHHHHHHHHhcCCCcEEEE
Confidence 46899999997 888774 666789999999999986443
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=99.39 E-value=5.1e-13 Score=99.23 Aligned_cols=108 Identities=12% Similarity=-0.002 Sum_probs=81.0
Q ss_pred CCCCcEEEeCCCccHHHHHHHhc--CCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCc
Q 038343 21 FSNKSCFEVGSGVGLVGICLAHV--KASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASE 98 (191)
Q Consensus 21 ~~~~~VLElG~GtG~~~~~la~~--g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~ 98 (191)
.++.+|||+|||+|..++.+++. +..+|+++|+++.+++.++++++.++.. .++.+...|..+...
T Consensus 21 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~------------~~v~~~~~d~~~~~~ 88 (197)
T 3eey_A 21 KEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLI------------DRVTLIKDGHQNMDK 88 (197)
T ss_dssp CTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCG------------GGEEEECSCGGGGGG
T ss_pred CCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC------------CCeEEEECCHHHHhh
Confidence 36779999999999999987775 2349999999999999999999988753 357777777644321
Q ss_pred CCCCCCCCCEEEEcccccCC---------CChHHHHHHHHHHhccCCCCcccc
Q 038343 99 SGLSAFVPEIILGADILYDR---------SCFPDLVRILAILLNRRKSVSSSR 142 (191)
Q Consensus 99 ~~~~~~~fDvIi~~d~ly~~---------~~~~~ll~~l~~ll~~~g~~~~~~ 142 (191)
..+++||+|++...++.. .....+++.+.++|+|+|......
T Consensus 89 --~~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~ 139 (197)
T 3eey_A 89 --YIDCPVKAVMFNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVI 139 (197)
T ss_dssp --TCCSCEEEEEEEESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred --hccCCceEEEEcCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEE
Confidence 233689999986544221 123578999999999998765443
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.38 E-value=8.9e-13 Score=100.99 Aligned_cols=98 Identities=7% Similarity=-0.033 Sum_probs=75.7
Q ss_pred CCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCC
Q 038343 21 FSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESG 100 (191)
Q Consensus 21 ~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~ 100 (191)
.++.+|||+|||+|..+..+++.+. +|+++|+++.+++.++++ +.+...|..+.. ..
T Consensus 40 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~---------------------~~~~~~d~~~~~-~~ 96 (240)
T 3dli_A 40 KGCRRVLDIGCGRGEFLELCKEEGI-ESIGVDINEDMIKFCEGK---------------------FNVVKSDAIEYL-KS 96 (240)
T ss_dssp TTCSCEEEETCTTTHHHHHHHHHTC-CEEEECSCHHHHHHHHTT---------------------SEEECSCHHHHH-HT
T ss_pred cCCCeEEEEeCCCCHHHHHHHhCCC-cEEEEECCHHHHHHHHhh---------------------cceeeccHHHHh-hh
Confidence 3568999999999999998888877 799999999999888765 122333322110 02
Q ss_pred CCCCCCCEEEEcccccCCC--ChHHHHHHHHHHhccCCCCccc
Q 038343 101 LSAFVPEIILGADILYDRS--CFPDLVRILAILLNRRKSVSSS 141 (191)
Q Consensus 101 ~~~~~fDvIi~~d~ly~~~--~~~~ll~~l~~ll~~~g~~~~~ 141 (191)
+.+++||+|++..++++.. +...+++.+.++|+|||.....
T Consensus 97 ~~~~~fD~i~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 139 (240)
T 3dli_A 97 LPDKYLDGVMISHFVEHLDPERLFELLSLCYSKMKYSSYIVIE 139 (240)
T ss_dssp SCTTCBSEEEEESCGGGSCGGGHHHHHHHHHHHBCTTCCEEEE
T ss_pred cCCCCeeEEEECCchhhCCcHHHHHHHHHHHHHcCCCcEEEEE
Confidence 3456899999999999888 5599999999999999875543
|
| >3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=9.1e-13 Score=103.45 Aligned_cols=96 Identities=13% Similarity=0.182 Sum_probs=78.8
Q ss_pred CCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCCC
Q 038343 22 SNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESGL 101 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~~ 101 (191)
+|.+|||+|||+|.+++.+++.|+.+|+++|+|+.+++.+++|++.|++. +++.+...|..+..
T Consensus 125 ~g~~VlD~~aG~G~~~i~~a~~g~~~V~avD~np~a~~~~~~N~~~N~v~------------~~v~~~~~D~~~~~---- 188 (278)
T 3k6r_A 125 PDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVE------------DRMSAYNMDNRDFP---- 188 (278)
T ss_dssp TTCEEEETTCTTTTTTHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCT------------TTEEEECSCTTTCC----
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHcCCC------------CcEEEEeCcHHHhc----
Confidence 68899999999999999999998779999999999999999999999976 56788887765443
Q ss_pred CCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCC
Q 038343 102 SAFVPEIILGADILYDRSCFPDLVRILAILLNRRKS 137 (191)
Q Consensus 102 ~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~ 137 (191)
..+.||.|++..+. ....++....++|++||-
T Consensus 189 ~~~~~D~Vi~~~p~----~~~~~l~~a~~~lk~gG~ 220 (278)
T 3k6r_A 189 GENIADRILMGYVV----RTHEFIPKALSIAKDGAI 220 (278)
T ss_dssp CCSCEEEEEECCCS----SGGGGHHHHHHHEEEEEE
T ss_pred cccCCCEEEECCCC----cHHHHHHHHHHHcCCCCE
Confidence 23579999986443 334567777789999863
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=99.38 E-value=4.1e-13 Score=101.30 Aligned_cols=101 Identities=15% Similarity=0.140 Sum_probs=76.4
Q ss_pred CCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCC-
Q 038343 22 SNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESG- 100 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~- 100 (191)
++.+|||+|||+|..+..+++.+. +|+++|+++.+++.++++ .. +.+...++.+.....
T Consensus 52 ~~~~vLdiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~---~~----------------~~~~~~~~~~~~~~~~ 111 (227)
T 3e8s_A 52 QPERVLDLGCGEGWLLRALADRGI-EAVGVDGDRTLVDAARAA---GA----------------GEVHLASYAQLAEAKV 111 (227)
T ss_dssp CCSEEEEETCTTCHHHHHHHTTTC-EEEEEESCHHHHHHHHHT---CS----------------SCEEECCHHHHHTTCS
T ss_pred CCCEEEEeCCCCCHHHHHHHHCCC-EEEEEcCCHHHHHHHHHh---cc----------------cccchhhHHhhccccc
Confidence 457999999999999999998876 899999999999998876 11 222333332221111
Q ss_pred CCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCccccc
Q 038343 101 LSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVSSSRK 143 (191)
Q Consensus 101 ~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~~~~~ 143 (191)
....+||+|+++.+++ ..+...+++.+.++|+|+|.......
T Consensus 112 ~~~~~fD~v~~~~~l~-~~~~~~~l~~~~~~L~pgG~l~~~~~ 153 (227)
T 3e8s_A 112 PVGKDYDLICANFALL-HQDIIELLSAMRTLLVPGGALVIQTL 153 (227)
T ss_dssp CCCCCEEEEEEESCCC-SSCCHHHHHHHHHTEEEEEEEEEEEC
T ss_pred ccCCCccEEEECchhh-hhhHHHHHHHHHHHhCCCeEEEEEec
Confidence 1234699999999999 88899999999999999987655433
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=1.9e-12 Score=102.13 Aligned_cols=116 Identities=21% Similarity=0.180 Sum_probs=82.6
Q ss_pred HHHHHHHHhhCCCCCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCee
Q 038343 7 SLLLSEFILSFPEIFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVV 86 (191)
Q Consensus 7 a~~L~~~l~~~~~~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i 86 (191)
+..|.+++.......++.+|||+|||+|.+++.+++.+..+|+++|+++.+++.+++|+..++.. +++
T Consensus 108 te~lv~~~l~~~~~~~~~~vLDlG~GsG~~~~~la~~~~~~v~~vDis~~al~~A~~n~~~~~l~------------~~v 175 (284)
T 1nv8_A 108 TEELVELALELIRKYGIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVS------------DRF 175 (284)
T ss_dssp HHHHHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHTTCT------------TSE
T ss_pred HHHHHHHHHHHhcccCCCEEEEEeCchhHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCC------------Cce
Confidence 44455555432211255699999999999999888773349999999999999999999998764 358
Q ss_pred EEEeecCCCCCcCCCCCCCC---CEEEEccc------------ccCC-------CChHHHHHHHH-HHhccCCCCc
Q 038343 87 QCVHLPWESASESGLSAFVP---EIILGADI------------LYDR-------SCFPDLVRILA-ILLNRRKSVS 139 (191)
Q Consensus 87 ~~~~ldw~~~~~~~~~~~~f---DvIi~~d~------------ly~~-------~~~~~ll~~l~-~ll~~~g~~~ 139 (191)
.+...||.+... ++| |+|+++.. .|.+ .+.-.+++.+. +.++|+|...
T Consensus 176 ~~~~~D~~~~~~-----~~f~~~D~IvsnPPyi~~~~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~ 246 (284)
T 1nv8_A 176 FVRKGEFLEPFK-----EKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVL 246 (284)
T ss_dssp EEEESSTTGGGG-----GGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEE
T ss_pred EEEECcchhhcc-----cccCCCCEEEEcCCCCCcccccChhhccCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEE
Confidence 888998876421 368 99999622 2111 11226788888 8999887543
|
| >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.38 E-value=2.1e-12 Score=96.59 Aligned_cols=98 Identities=20% Similarity=0.178 Sum_probs=78.9
Q ss_pred CCCcEEEeCCCccHHHHHHHhc-CCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCC
Q 038343 22 SNKSCFEVGSGVGLVGICLAHV-KASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESG 100 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~-g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~ 100 (191)
++.+|||+|||+|..++.++.. +..+|+++|+++.+++.+++|+..++.. ++.+...|+.+..
T Consensus 65 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-------------~v~~~~~d~~~~~--- 128 (207)
T 1jsx_A 65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLE-------------NIEPVQSRVEEFP--- 128 (207)
T ss_dssp CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCS-------------SEEEEECCTTTSC---
T ss_pred CCCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-------------CeEEEecchhhCC---
Confidence 4779999999999999987765 3359999999999999999999887753 3778888876543
Q ss_pred CCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCcc
Q 038343 101 LSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVSS 140 (191)
Q Consensus 101 ~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~~ 140 (191)
..++||+|++.. ......+++.+.++|+|||....
T Consensus 129 -~~~~~D~i~~~~----~~~~~~~l~~~~~~L~~gG~l~~ 163 (207)
T 1jsx_A 129 -SEPPFDGVISRA----FASLNDMVSWCHHLPGEQGRFYA 163 (207)
T ss_dssp -CCSCEEEEECSC----SSSHHHHHHHHTTSEEEEEEEEE
T ss_pred -ccCCcCEEEEec----cCCHHHHHHHHHHhcCCCcEEEE
Confidence 235799999754 25678999999999999975443
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=99.38 E-value=3e-12 Score=98.83 Aligned_cols=101 Identities=14% Similarity=0.064 Sum_probs=81.0
Q ss_pred hCCCCCCCCcEEEeCCCccHHHHHHHhc-C-CCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecC
Q 038343 16 SFPEIFSNKSCFEVGSGVGLVGICLAHV-K-ASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPW 93 (191)
Q Consensus 16 ~~~~~~~~~~VLElG~GtG~~~~~la~~-g-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw 93 (191)
......++.+|||+|||+|..+..+++. + ..+|+++|+++.+++.+++|++.++.. +++.+...|+
T Consensus 87 ~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~------------~~v~~~~~d~ 154 (255)
T 3mb5_A 87 AYAGISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFD------------DRVTIKLKDI 154 (255)
T ss_dssp HHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCT------------TTEEEECSCG
T ss_pred HhhCCCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCC------------CceEEEECch
Confidence 3334457889999999999999988876 4 359999999999999999999988754 3477788777
Q ss_pred CCCCcCCCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCC
Q 038343 94 ESASESGLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKS 137 (191)
Q Consensus 94 ~~~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~ 137 (191)
.+. +...+||+|++ +..+...+++.+.++|+|+|.
T Consensus 155 ~~~----~~~~~~D~v~~-----~~~~~~~~l~~~~~~L~~gG~ 189 (255)
T 3mb5_A 155 YEG----IEEENVDHVIL-----DLPQPERVVEHAAKALKPGGF 189 (255)
T ss_dssp GGC----CCCCSEEEEEE-----CSSCGGGGHHHHHHHEEEEEE
T ss_pred hhc----cCCCCcCEEEE-----CCCCHHHHHHHHHHHcCCCCE
Confidence 643 34467999997 355677899999999999974
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=2.9e-13 Score=106.84 Aligned_cols=109 Identities=13% Similarity=0.115 Sum_probs=74.8
Q ss_pred CCCcEEEeCCCccHHHHHH-----HhcCCCe--EEEEcCChHHHHHHHHHHHHh-cCCCCcccccccCCCCeeEE--Eee
Q 038343 22 SNKSCFEVGSGVGLVGICL-----AHVKASK--VTLTDGDHLTLANMRSNLELN-QLSTDTSLLESYEDPNVVQC--VHL 91 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~l-----a~~g~~~--v~~tD~~~~~l~~~~~n~~~n-~~~~~~~~~~~~~~~~~i~~--~~l 91 (191)
++.+|||+|||+|.++..+ .+..... ++++|.+++|++.+++++... ++. ++.+ ...
T Consensus 52 ~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~-------------~v~~~~~~~ 118 (292)
T 2aot_A 52 SEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLE-------------NVKFAWHKE 118 (292)
T ss_dssp SEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCT-------------TEEEEEECS
T ss_pred CCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCC-------------cceEEEEec
Confidence 4669999999999765422 2222223 499999999999999887543 211 2222 222
Q ss_pred cCCCCCc---CCCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCccccc
Q 038343 92 PWESASE---SGLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVSSSRK 143 (191)
Q Consensus 92 dw~~~~~---~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~~~~~ 143 (191)
+..+... ..+.+++||+|+++.++++.++.+.+++.++++|||||....+..
T Consensus 119 ~~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~ 173 (292)
T 2aot_A 119 TSSEYQSRMLEKKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIVV 173 (292)
T ss_dssp CHHHHHHHHHTTTCCCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred chhhhhhhhccccCCCceeEEEEeeeeeecCCHHHHHHHHHHHcCCCcEEEEEEe
Confidence 2111000 012356899999999999999999999999999999987665543
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... | Back alignment and structure |
|---|
Probab=99.37 E-value=3.7e-13 Score=102.06 Aligned_cols=104 Identities=12% Similarity=0.047 Sum_probs=74.2
Q ss_pred CCCcEEEeCCCccHHHHHHHhc-C-CCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcC
Q 038343 22 SNKSCFEVGSGVGLVGICLAHV-K-ASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASES 99 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~-g-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~ 99 (191)
++.+|||+|||+|..++.+++. + ..+|+++|+++.+++.+++|++.++.. .++.+...|..+....
T Consensus 58 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~------------~~v~~~~~d~~~~l~~ 125 (221)
T 3u81_A 58 SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQ------------DKVTILNGASQDLIPQ 125 (221)
T ss_dssp CCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCG------------GGEEEEESCHHHHGGG
T ss_pred CCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCC------------CceEEEECCHHHHHHH
Confidence 5679999999999999988874 2 349999999999999999999988764 3577777775332111
Q ss_pred ---CCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCC
Q 038343 100 ---GLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSV 138 (191)
Q Consensus 100 ---~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~ 138 (191)
....++||+|++.....+......++..+ ++|+|||..
T Consensus 126 ~~~~~~~~~fD~V~~d~~~~~~~~~~~~~~~~-~~LkpgG~l 166 (221)
T 3u81_A 126 LKKKYDVDTLDMVFLDHWKDRYLPDTLLLEKC-GLLRKGTVL 166 (221)
T ss_dssp TTTTSCCCCCSEEEECSCGGGHHHHHHHHHHT-TCCCTTCEE
T ss_pred HHHhcCCCceEEEEEcCCcccchHHHHHHHhc-cccCCCeEE
Confidence 11225899999854443332233455555 899999743
|
| >1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=1.5e-11 Score=102.33 Aligned_cols=107 Identities=15% Similarity=0.115 Sum_probs=76.9
Q ss_pred HHHHHHHHhhCCCCCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCee
Q 038343 7 SLLLSEFILSFPEIFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVV 86 (191)
Q Consensus 7 a~~L~~~l~~~~~~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i 86 (191)
+..|.+.+.......++.+|||+|||+|.+++.+++.+ .+|+++|+++.+++.+++|++.|++. ++
T Consensus 271 ~e~l~~~~~~~l~~~~~~~VLDlgcG~G~~~~~la~~~-~~V~gvD~s~~al~~A~~n~~~~~~~-------------~v 336 (433)
T 1uwv_A 271 NQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQA-ASVVGVEGVPALVEKGQQNARLNGLQ-------------NV 336 (433)
T ss_dssp HHHHHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTTS-SEEEEEESCHHHHHHHHHHHHHTTCC-------------SE
T ss_pred HHHHHHHHHHhhcCCCCCEEEECCCCCCHHHHHHHhhC-CEEEEEeCCHHHHHHHHHHHHHcCCC-------------ce
Confidence 44555555443333466799999999999999999885 49999999999999999999998753 57
Q ss_pred EEEeecCCCCCcC-CCCCCCCCEEEEcccccCCCChHHHHHHHHH
Q 038343 87 QCVHLPWESASES-GLSAFVPEIILGADILYDRSCFPDLVRILAI 130 (191)
Q Consensus 87 ~~~~ldw~~~~~~-~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ 130 (191)
.+...|+.+.... .+.+.+||+|++ |.-|... ..+++.+..
T Consensus 337 ~f~~~d~~~~l~~~~~~~~~fD~Vv~-dPPr~g~--~~~~~~l~~ 378 (433)
T 1uwv_A 337 TFYHENLEEDVTKQPWAKNGFDKVLL-DPARAGA--AGVMQQIIK 378 (433)
T ss_dssp EEEECCTTSCCSSSGGGTTCCSEEEE-CCCTTCC--HHHHHHHHH
T ss_pred EEEECCHHHHhhhhhhhcCCCCEEEE-CCCCccH--HHHHHHHHh
Confidence 8888888764322 133457999997 4444332 345555543
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=1.3e-12 Score=98.87 Aligned_cols=100 Identities=16% Similarity=0.053 Sum_probs=75.9
Q ss_pred CCCcEEEeCCCccHHHHHHHhcC--CCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcC
Q 038343 22 SNKSCFEVGSGVGLVGICLAHVK--ASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASES 99 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~g--~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~ 99 (191)
++.+|||+|||+|..++.+++.. ..+|+++|+++.+++.+++++..++.. .++.+...|..+....
T Consensus 58 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~------------~~v~~~~~d~~~~~~~ 125 (223)
T 3duw_A 58 GARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLN------------DRVEVRTGLALDSLQQ 125 (223)
T ss_dssp TCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCT------------TTEEEEESCHHHHHHH
T ss_pred CCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC------------CcEEEEEcCHHHHHHH
Confidence 57799999999999999888762 239999999999999999999888754 3577777765332110
Q ss_pred C--CCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCC
Q 038343 100 G--LSAFVPEIILGADILYDRSCFPDLVRILAILLNRRK 136 (191)
Q Consensus 100 ~--~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g 136 (191)
. ....+||+|++... ......+++.+.++|+|||
T Consensus 126 ~~~~~~~~fD~v~~d~~---~~~~~~~l~~~~~~L~pgG 161 (223)
T 3duw_A 126 IENEKYEPFDFIFIDAD---KQNNPAYFEWALKLSRPGT 161 (223)
T ss_dssp HHHTTCCCCSEEEECSC---GGGHHHHHHHHHHTCCTTC
T ss_pred HHhcCCCCcCEEEEcCC---cHHHHHHHHHHHHhcCCCc
Confidence 0 01146999997432 4456789999999999997
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.35 E-value=1.2e-12 Score=100.12 Aligned_cols=101 Identities=18% Similarity=0.214 Sum_probs=79.4
Q ss_pred CCCcEEEeCCCccHHHHHHHhcC-CCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCC
Q 038343 22 SNKSCFEVGSGVGLVGICLAHVK-ASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESG 100 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~g-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~ 100 (191)
++.+|||+|||+|..++.+++.. ..+|+++|+++.+++.++++++.++.. .++.+...|..+.....
T Consensus 71 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~------------~~v~~~~~d~~~~~~~~ 138 (232)
T 3ntv_A 71 NVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHFE------------NQVRIIEGNALEQFENV 138 (232)
T ss_dssp TCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCT------------TTEEEEESCGGGCHHHH
T ss_pred CCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC------------CcEEEEECCHHHHHHhh
Confidence 57799999999999999888843 349999999999999999999888754 35788887765432100
Q ss_pred CCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCC
Q 038343 101 LSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSV 138 (191)
Q Consensus 101 ~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~ 138 (191)
..++||+|++. ........+++.+.++|+|||..
T Consensus 139 -~~~~fD~V~~~---~~~~~~~~~l~~~~~~LkpgG~l 172 (232)
T 3ntv_A 139 -NDKVYDMIFID---AAKAQSKKFFEIYTPLLKHQGLV 172 (232)
T ss_dssp -TTSCEEEEEEE---TTSSSHHHHHHHHGGGEEEEEEE
T ss_pred -ccCCccEEEEc---CcHHHHHHHHHHHHHhcCCCeEE
Confidence 14689999964 24566888999999999999743
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.35 E-value=4.8e-12 Score=95.61 Aligned_cols=105 Identities=9% Similarity=0.005 Sum_probs=77.4
Q ss_pred CCCcEEEeCCCccHHHHHHHhcC-CCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCC
Q 038343 22 SNKSCFEVGSGVGLVGICLAHVK-ASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESG 100 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~g-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~ 100 (191)
++.+|||+|||+|..++.+++.. ..+|+++|+++.+++.+++|+..++.. ++.+...|..+.. ..
T Consensus 38 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~~-------------nv~~~~~d~~~l~-~~ 103 (213)
T 2fca_A 38 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQ-------------NVKLLNIDADTLT-DV 103 (213)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCS-------------SEEEECCCGGGHH-HH
T ss_pred CCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCCC-------------CEEEEeCCHHHHH-hh
Confidence 45689999999999999888763 348999999999999999999887643 4777777765421 11
Q ss_pred CCCCCCCEEEEcccccCCC--------ChHHHHHHHHHHhccCCCCcc
Q 038343 101 LSAFVPEIILGADILYDRS--------CFPDLVRILAILLNRRKSVSS 140 (191)
Q Consensus 101 ~~~~~fDvIi~~d~ly~~~--------~~~~ll~~l~~ll~~~g~~~~ 140 (191)
+.+++||.|++.-.-.+.. ....+++.+.++|+|||....
T Consensus 104 ~~~~~~d~v~~~~~~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~ 151 (213)
T 2fca_A 104 FEPGEVKRVYLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHF 151 (213)
T ss_dssp CCTTSCCEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEE
T ss_pred cCcCCcCEEEEECCCCCcCccccccccCcHHHHHHHHHHcCCCCEEEE
Confidence 3456799998742211111 147899999999999986543
|
| >2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 | Back alignment and structure |
|---|
Probab=99.35 E-value=1.5e-12 Score=104.84 Aligned_cols=104 Identities=15% Similarity=0.135 Sum_probs=78.2
Q ss_pred CCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCC-
Q 038343 22 SNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESG- 100 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~- 100 (191)
++.+|||+|||+|..++.+++.|+ +|+++|+++.+++.+++|++.|++.. .++.+...|..+.....
T Consensus 153 ~~~~VLDlgcGtG~~sl~la~~ga-~V~~VD~s~~al~~a~~n~~~~gl~~-----------~~v~~i~~D~~~~l~~~~ 220 (332)
T 2igt_A 153 RPLKVLNLFGYTGVASLVAAAAGA-EVTHVDASKKAIGWAKENQVLAGLEQ-----------APIRWICEDAMKFIQREE 220 (332)
T ss_dssp SCCEEEEETCTTCHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHHHHTCTT-----------SCEEEECSCHHHHHHHHH
T ss_pred CCCcEEEcccccCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHcCCCc-----------cceEEEECcHHHHHHHHH
Confidence 567999999999999999999888 99999999999999999999998641 13666766654321100
Q ss_pred CCCCCCCEEEEcccccCC----------CChHHHHHHHHHHhccCCC
Q 038343 101 LSAFVPEIILGADILYDR----------SCFPDLVRILAILLNRRKS 137 (191)
Q Consensus 101 ~~~~~fDvIi~~d~ly~~----------~~~~~ll~~l~~ll~~~g~ 137 (191)
....+||+|++....|.. .....+++.+.++|+|+|.
T Consensus 221 ~~~~~fD~Ii~dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~ 267 (332)
T 2igt_A 221 RRGSTYDIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKAL 267 (332)
T ss_dssp HHTCCBSEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCC
T ss_pred hcCCCceEEEECCccccCCchHHHHHHHHHHHHHHHHHHHhcCcCcE
Confidence 013579999985443321 2356888999999999974
|
| >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 | Back alignment and structure |
|---|
Probab=99.35 E-value=4.8e-12 Score=95.53 Aligned_cols=103 Identities=11% Similarity=0.081 Sum_probs=70.8
Q ss_pred CCCCcEEEeCCCccHHHHHHHhcC-CCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCc-
Q 038343 21 FSNKSCFEVGSGVGLVGICLAHVK-ASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASE- 98 (191)
Q Consensus 21 ~~~~~VLElG~GtG~~~~~la~~g-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~- 98 (191)
.++.+|||+|||+|..+..+++.. ..+|+++|+++.+++.+.++.+.. .++.+...|......
T Consensus 56 ~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~---------------~~v~~~~~d~~~~~~~ 120 (210)
T 1nt2_A 56 RGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRER---------------NNIIPLLFDASKPWKY 120 (210)
T ss_dssp CSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHC---------------SSEEEECSCTTCGGGT
T ss_pred CCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcC---------------CCeEEEEcCCCCchhh
Confidence 467899999999999988777653 348999999999987776655432 134444445433211
Q ss_pred CCCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCccc
Q 038343 99 SGLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVSSS 141 (191)
Q Consensus 99 ~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~~~ 141 (191)
..+. ++||+|++. +..+.....+++.+.++|||||.....
T Consensus 121 ~~~~-~~fD~V~~~--~~~~~~~~~~l~~~~r~LkpgG~l~i~ 160 (210)
T 1nt2_A 121 SGIV-EKVDLIYQD--IAQKNQIEILKANAEFFLKEKGEVVIM 160 (210)
T ss_dssp TTTC-CCEEEEEEC--CCSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred cccc-cceeEEEEe--ccChhHHHHHHHHHHHHhCCCCEEEEE
Confidence 1122 689999985 233333445689999999999865544
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.35 E-value=1.5e-11 Score=89.57 Aligned_cols=102 Identities=10% Similarity=0.022 Sum_probs=73.2
Q ss_pred ccHHHHHHHHhhCCCCCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCC
Q 038343 5 PSSLLLSEFILSFPEIFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPN 84 (191)
Q Consensus 5 ~~a~~L~~~l~~~~~~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~ 84 (191)
+.+..|.+++... ..++.+|||+|||+|..++.+++.+ +|+++|+++.+++. . .
T Consensus 8 ~~~~~l~~~l~~~--~~~~~~vLD~GcG~G~~~~~l~~~~--~v~gvD~s~~~~~~------~----------------~ 61 (170)
T 3q87_B 8 EDTYTLMDALERE--GLEMKIVLDLGTSTGVITEQLRKRN--TVVSTDLNIRALES------H----------------R 61 (170)
T ss_dssp HHHHHHHHHHHHH--TCCSCEEEEETCTTCHHHHHHTTTS--EEEEEESCHHHHHT------C----------------S
T ss_pred ccHHHHHHHHHhh--cCCCCeEEEeccCccHHHHHHHhcC--cEEEEECCHHHHhc------c----------------c
Confidence 4456666665442 1356699999999999999999987 99999999999876 1 2
Q ss_pred eeEEEeecCCCCCcCCCCCCCCCEEEEcccccCCCCh---------HHHHHHHHHHhccCCC
Q 038343 85 VVQCVHLPWESASESGLSAFVPEIILGADILYDRSCF---------PDLVRILAILLNRRKS 137 (191)
Q Consensus 85 ~i~~~~ldw~~~~~~~~~~~~fDvIi~~d~ly~~~~~---------~~ll~~l~~ll~~~g~ 137 (191)
++.+...|+.+. +.+++||+|+++.+++..... ..+++.+.+.+ |+|.
T Consensus 62 ~~~~~~~d~~~~----~~~~~fD~i~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-pgG~ 118 (170)
T 3q87_B 62 GGNLVRADLLCS----INQESVDVVVFNPPYVPDTDDPIIGGGYLGREVIDRFVDAV-TVGM 118 (170)
T ss_dssp SSCEEECSTTTT----BCGGGCSEEEECCCCBTTCCCTTTBCCGGGCHHHHHHHHHC-CSSE
T ss_pred CCeEEECChhhh----cccCCCCEEEECCCCccCCccccccCCcchHHHHHHHHhhC-CCCE
Confidence 456677777653 233689999998776654333 45666666666 7764
|
| >4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=3.4e-13 Score=115.86 Aligned_cols=104 Identities=14% Similarity=0.089 Sum_probs=78.0
Q ss_pred CCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCCC
Q 038343 22 SNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESGL 101 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~~ 101 (191)
++.+|||+|||+|.++..+|+.|+ +|+++|.++.+++.++..+..++.. ++.+...+.++... ..
T Consensus 66 ~~~~vLDvGCG~G~~~~~la~~ga-~V~giD~~~~~i~~a~~~a~~~~~~-------------~~~~~~~~~~~~~~-~~ 130 (569)
T 4azs_A 66 RPLNVLDLGCAQGFFSLSLASKGA-TIVGIDFQQENINVCRALAEENPDF-------------AAEFRVGRIEEVIA-AL 130 (569)
T ss_dssp SCCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTSTTS-------------EEEEEECCHHHHHH-HC
T ss_pred CCCeEEEECCCCcHHHHHHHhCCC-EEEEECCCHHHHHHHHHHHHhcCCC-------------ceEEEECCHHHHhh-hc
Confidence 467999999999999999999998 8999999999999999888776532 46666666543211 12
Q ss_pred CCCCCCEEEEcccccCCCChHHH--HHHHHHHhccCCCCcc
Q 038343 102 SAFVPEIILGADILYDRSCFPDL--VRILAILLNRRKSVSS 140 (191)
Q Consensus 102 ~~~~fDvIi~~d~ly~~~~~~~l--l~~l~~ll~~~g~~~~ 140 (191)
.+++||+|++.++++|..+...+ +..+.+.|++++++..
T Consensus 131 ~~~~fD~v~~~e~~ehv~~~~~~~~~~~~~~tl~~~~~~~~ 171 (569)
T 4azs_A 131 EEGEFDLAIGLSVFHHIVHLHGIDEVKRLLSRLADVTQAVI 171 (569)
T ss_dssp CTTSCSEEEEESCHHHHHHHHCHHHHHHHHHHHHHHSSEEE
T ss_pred cCCCccEEEECcchhcCCCHHHHHHHHHHHHHhccccceee
Confidence 34689999999999987665433 2344555777766553
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.34 E-value=2e-12 Score=100.25 Aligned_cols=96 Identities=15% Similarity=0.057 Sum_probs=75.0
Q ss_pred CCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCCC
Q 038343 22 SNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESGL 101 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~~ 101 (191)
++.+|||+|||+|..+..+++.+. +|+++|+++.+++.++++... . +...|..+.. +
T Consensus 54 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~l~~a~~~~~~-----------------~--~~~~d~~~~~---~ 110 (260)
T 2avn_A 54 NPCRVLDLGGGTGKWSLFLQERGF-EVVLVDPSKEMLEVAREKGVK-----------------N--VVEAKAEDLP---F 110 (260)
T ss_dssp SCCEEEEETCTTCHHHHHHHTTTC-EEEEEESCHHHHHHHHHHTCS-----------------C--EEECCTTSCC---S
T ss_pred CCCeEEEeCCCcCHHHHHHHHcCC-eEEEEeCCHHHHHHHHhhcCC-----------------C--EEECcHHHCC---C
Confidence 677999999999999999988876 899999999999998876431 1 3444544322 3
Q ss_pred CCCCCCEEEEccccc-CCCChHHHHHHHHHHhccCCCCcc
Q 038343 102 SAFVPEIILGADILY-DRSCFPDLVRILAILLNRRKSVSS 140 (191)
Q Consensus 102 ~~~~fDvIi~~d~ly-~~~~~~~ll~~l~~ll~~~g~~~~ 140 (191)
.+++||+|++..+++ ...+...+++.+.++|+|+|....
T Consensus 111 ~~~~fD~v~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 150 (260)
T 2avn_A 111 PSGAFEAVLALGDVLSYVENKDKAFSEIRRVLVPDGLLIA 150 (260)
T ss_dssp CTTCEEEEEECSSHHHHCSCHHHHHHHHHHHEEEEEEEEE
T ss_pred CCCCEEEEEEcchhhhccccHHHHHHHHHHHcCCCeEEEE
Confidence 456899999987554 446799999999999999986543
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} | Back alignment and structure |
|---|
Probab=99.34 E-value=7.3e-12 Score=95.60 Aligned_cols=98 Identities=18% Similarity=0.049 Sum_probs=77.7
Q ss_pred CCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCCC
Q 038343 22 SNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESGL 101 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~~ 101 (191)
++.+|||+|||+|..+..+++. .+|+++|+++.+++.++++...++. ++.+...|..+.. .
T Consensus 33 ~~~~vLdiG~G~G~~~~~l~~~--~~v~~vD~s~~~~~~a~~~~~~~~~--------------~~~~~~~d~~~~~---~ 93 (243)
T 3d2l_A 33 PGKRIADIGCGTGTATLLLADH--YEVTGVDLSEEMLEIAQEKAMETNR--------------HVDFWVQDMRELE---L 93 (243)
T ss_dssp TTCEEEEESCTTCHHHHHHTTT--SEEEEEESCHHHHHHHHHHHHHTTC--------------CCEEEECCGGGCC---C
T ss_pred CCCeEEEecCCCCHHHHHHhhC--CeEEEEECCHHHHHHHHHhhhhcCC--------------ceEEEEcChhhcC---C
Confidence 4679999999999999988887 4999999999999999999877652 3566666665432 1
Q ss_pred CCCCCCEEEEc-ccccCC---CChHHHHHHHHHHhccCCCCc
Q 038343 102 SAFVPEIILGA-DILYDR---SCFPDLVRILAILLNRRKSVS 139 (191)
Q Consensus 102 ~~~~fDvIi~~-d~ly~~---~~~~~ll~~l~~ll~~~g~~~ 139 (191)
.++||+|++. +++++. .....+++.+.++|+|+|...
T Consensus 94 -~~~fD~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~ 134 (243)
T 3d2l_A 94 -PEPVDAITILCDSLNYLQTEADVKQTFDSAARLLTDGGKLL 134 (243)
T ss_dssp -SSCEEEEEECTTGGGGCCSHHHHHHHHHHHHHHEEEEEEEE
T ss_pred -CCCcCEEEEeCCchhhcCCHHHHHHHHHHHHHhcCCCeEEE
Confidence 2579999987 488776 456778999999999997543
|
| >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... | Back alignment and structure |
|---|
Probab=99.34 E-value=3.4e-13 Score=106.19 Aligned_cols=120 Identities=13% Similarity=0.093 Sum_probs=77.6
Q ss_pred CCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCc-----ccccccC------------CC
Q 038343 21 FSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDT-----SLLESYE------------DP 83 (191)
Q Consensus 21 ~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~-----~~~~~~~------------~~ 83 (191)
.++.+|||||||+|...+.++..+..+|+++|+++.+++.+++++......... ....... ..
T Consensus 70 ~~~~~vLDiGcG~G~~~~l~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 149 (289)
T 2g72_A 70 VSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRA 149 (289)
T ss_dssp SCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHH
T ss_pred CCCCeEEEECCCcChHHHHhhccCCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHHh
Confidence 367899999999999665555543459999999999999998865422100000 0000000 00
Q ss_pred CeeEEEeecCCCCCc---CCCCCCCCCEEEEcccccC----CCChHHHHHHHHHHhccCCCCcc
Q 038343 84 NVVQCVHLPWESASE---SGLSAFVPEIILGADILYD----RSCFPDLVRILAILLNRRKSVSS 140 (191)
Q Consensus 84 ~~i~~~~ldw~~~~~---~~~~~~~fDvIi~~d~ly~----~~~~~~ll~~l~~ll~~~g~~~~ 140 (191)
..+.+...|..+... ..+++++||+|+++.++++ ..+...+++.+.++|||||....
T Consensus 150 ~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~ 213 (289)
T 2g72_A 150 RVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLL 213 (289)
T ss_dssp HEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred hhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEE
Confidence 013445556554211 1234467999999999987 55788999999999999986554
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.34 E-value=6.4e-11 Score=88.46 Aligned_cols=93 Identities=11% Similarity=0.012 Sum_probs=71.5
Q ss_pred CCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcC
Q 038343 20 IFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASES 99 (191)
Q Consensus 20 ~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~ 99 (191)
..++.+|||+|||+|..++.+++.|..+|+++|+++.+++.+++|+..++. ++.+...|+.+..
T Consensus 47 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~--------------~~~~~~~d~~~~~-- 110 (207)
T 1wy7_A 47 DIEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKG--------------KFKVFIGDVSEFN-- 110 (207)
T ss_dssp SSTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTT--------------SEEEEESCGGGCC--
T ss_pred CCCcCEEEEeeCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCC--------------CEEEEECchHHcC--
Confidence 346789999999999999999988777899999999999999999887763 3566776665431
Q ss_pred CCCCCCCCEEEEcccccCC--CChHHHHHHHHHHh
Q 038343 100 GLSAFVPEIILGADILYDR--SCFPDLVRILAILL 132 (191)
Q Consensus 100 ~~~~~~fDvIi~~d~ly~~--~~~~~ll~~l~~ll 132 (191)
.+||+|+++.+++.. .....+++.+.+++
T Consensus 111 ----~~~D~v~~~~p~~~~~~~~~~~~l~~~~~~l 141 (207)
T 1wy7_A 111 ----SRVDIVIMNPPFGSQRKHADRPFLLKAFEIS 141 (207)
T ss_dssp ----CCCSEEEECCCCSSSSTTTTHHHHHHHHHHC
T ss_pred ----CCCCEEEEcCCCccccCCchHHHHHHHHHhc
Confidence 379999987665543 23456667666666
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=4.1e-12 Score=100.45 Aligned_cols=107 Identities=12% Similarity=0.013 Sum_probs=82.1
Q ss_pred CCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCCCC
Q 038343 23 NKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESGLS 102 (191)
Q Consensus 23 ~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~~~ 102 (191)
+.+|||||||+|..+..+++.|. +|+++|+++.+++.+++++..++.... .++.+...|+.+...
T Consensus 83 ~~~vLDlGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~----------~~v~~~~~d~~~~~~---- 147 (299)
T 3g2m_A 83 SGPVLELAAGMGRLTFPFLDLGW-EVTALELSTSVLAAFRKRLAEAPADVR----------DRCTLVQGDMSAFAL---- 147 (299)
T ss_dssp CSCEEEETCTTTTTHHHHHTTTC-CEEEEESCHHHHHHHHHHHHTSCHHHH----------TTEEEEECBTTBCCC----
T ss_pred CCcEEEEeccCCHHHHHHHHcCC-eEEEEECCHHHHHHHHHHHhhcccccc----------cceEEEeCchhcCCc----
Confidence 44999999999999999998876 899999999999999998876542100 247788888765431
Q ss_pred CCCCCEEEEc-ccccCCC--ChHHHHHHHHHHhccCCCCcccccc
Q 038343 103 AFVPEIILGA-DILYDRS--CFPDLVRILAILLNRRKSVSSSRKE 144 (191)
Q Consensus 103 ~~~fDvIi~~-d~ly~~~--~~~~ll~~l~~ll~~~g~~~~~~~~ 144 (191)
+++||+|+++ .++++.. +...+++.+.++|+|||........
T Consensus 148 ~~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 192 (299)
T 3g2m_A 148 DKRFGTVVISSGSINELDEADRRGLYASVREHLEPGGKFLLSLAM 192 (299)
T ss_dssp SCCEEEEEECHHHHTTSCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred CCCcCEEEECCcccccCCHHHHHHHHHHHHHHcCCCcEEEEEeec
Confidence 4689999865 5555554 3689999999999999875544433
|
| >1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A | Back alignment and structure |
|---|
Probab=99.34 E-value=2.7e-12 Score=99.03 Aligned_cols=118 Identities=17% Similarity=0.154 Sum_probs=75.4
Q ss_pred CCCcEEEeCCCccHHHHHHHhc---CCCeEEEEcCChHHHHHHHHHHHHh---cCCCCcc---------cc----cccCC
Q 038343 22 SNKSCFEVGSGVGLVGICLAHV---KASKVTLTDGDHLTLANMRSNLELN---QLSTDTS---------LL----ESYED 82 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~---g~~~v~~tD~~~~~l~~~~~n~~~n---~~~~~~~---------~~----~~~~~ 82 (191)
++.+|||+|||+|..++.+++. +..+|+++|+++.+++.+++|+..+ ++..... .. .....
T Consensus 51 ~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (250)
T 1o9g_A 51 GPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQA 130 (250)
T ss_dssp SCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhhhcccccchhhhhh
Confidence 5679999999999999987765 2348999999999999999998766 3210000 00 00000
Q ss_pred CCeeE-------------EEeecCCCCCcCC-C-CCCCCCEEEEcccccCCCC---------hHHHHHHHHHHhccCCCC
Q 038343 83 PNVVQ-------------CVHLPWESASESG-L-SAFVPEIILGADILYDRSC---------FPDLVRILAILLNRRKSV 138 (191)
Q Consensus 83 ~~~i~-------------~~~ldw~~~~~~~-~-~~~~fDvIi~~d~ly~~~~---------~~~ll~~l~~ll~~~g~~ 138 (191)
..++. +...|+.+..... . ...+||+|+++.++..... ...+++.+.++|+|+|..
T Consensus 131 ~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l 210 (250)
T 1o9g_A 131 ARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPAHAVI 210 (250)
T ss_dssp HHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCTTCEE
T ss_pred hhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHHHHHHHHHhcCCCcEE
Confidence 00033 6666665432100 0 2247999999765543332 348899999999999864
Q ss_pred c
Q 038343 139 S 139 (191)
Q Consensus 139 ~ 139 (191)
.
T Consensus 211 ~ 211 (250)
T 1o9g_A 211 A 211 (250)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A | Back alignment and structure |
|---|
Probab=99.33 E-value=6.1e-12 Score=95.92 Aligned_cols=104 Identities=10% Similarity=0.042 Sum_probs=75.6
Q ss_pred CCCCCcEEEeCCCccHHHHHHHhc-CCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCc
Q 038343 20 IFSNKSCFEVGSGVGLVGICLAHV-KASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASE 98 (191)
Q Consensus 20 ~~~~~~VLElG~GtG~~~~~la~~-g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~ 98 (191)
..++.+|||+|||+|..+..+++. |..+|+++|+++.+++.++++++.+ .++.+...|..+...
T Consensus 72 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~---------------~~v~~~~~d~~~~~~ 136 (230)
T 1fbn_A 72 IKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAER---------------ENIIPILGDANKPQE 136 (230)
T ss_dssp CCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTC---------------TTEEEEECCTTCGGG
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcC---------------CCeEEEECCCCCccc
Confidence 346789999999999999988876 5459999999999999999886544 146666666654211
Q ss_pred -CCCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCccc
Q 038343 99 -SGLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVSSS 141 (191)
Q Consensus 99 -~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~~~ 141 (191)
..+. .+||+|+. ++ ..+.....+++.+.++|+|+|.....
T Consensus 137 ~~~~~-~~~D~v~~-~~-~~~~~~~~~l~~~~~~LkpgG~l~i~ 177 (230)
T 1fbn_A 137 YANIV-EKVDVIYE-DV-AQPNQAEILIKNAKWFLKKGGYGMIA 177 (230)
T ss_dssp GTTTS-CCEEEEEE-CC-CSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ccccC-ccEEEEEE-ec-CChhHHHHHHHHHHHhCCCCcEEEEE
Confidence 1122 57999993 22 22223378899999999999876654
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.33 E-value=2.5e-12 Score=97.78 Aligned_cols=91 Identities=13% Similarity=0.024 Sum_probs=73.9
Q ss_pred CCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCCC
Q 038343 22 SNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESGL 101 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~~ 101 (191)
++.+|||+|||+|..+..+++.+. +|+++|+++.+++.++++ . .++.+...|+.+..+ +
T Consensus 48 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~----~--------------~~~~~~~~d~~~~~~--~ 106 (226)
T 3m33_A 48 PQTRVLEAGCGHGPDAARFGPQAA-RWAAYDFSPELLKLARAN----A--------------PHADVYEWNGKGELP--A 106 (226)
T ss_dssp TTCEEEEESCTTSHHHHHHGGGSS-EEEEEESCHHHHHHHHHH----C--------------TTSEEEECCSCSSCC--T
T ss_pred CCCeEEEeCCCCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHh----C--------------CCceEEEcchhhccC--C
Confidence 577999999999999999999876 999999999999999877 1 246778888753322 3
Q ss_pred C-CCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCc
Q 038343 102 S-AFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVS 139 (191)
Q Consensus 102 ~-~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~ 139 (191)
. +++||+|+++ .+...+++.+.++|+|+|...
T Consensus 107 ~~~~~fD~v~~~------~~~~~~l~~~~~~LkpgG~l~ 139 (226)
T 3m33_A 107 GLGAPFGLIVSR------RGPTSVILRLPELAAPDAHFL 139 (226)
T ss_dssp TCCCCEEEEEEE------SCCSGGGGGHHHHEEEEEEEE
T ss_pred cCCCCEEEEEeC------CCHHHHHHHHHHHcCCCcEEE
Confidence 3 5689999987 467788999999999997543
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.33 E-value=1.2e-12 Score=105.79 Aligned_cols=100 Identities=18% Similarity=0.200 Sum_probs=79.1
Q ss_pred CCCcEEEeCCCccHHHHHHHhcCCC-eEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCC
Q 038343 22 SNKSCFEVGSGVGLVGICLAHVKAS-KVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESG 100 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~g~~-~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~ 100 (191)
++.+|||+|||+|..++.+++.+.. +|+++|+++.+++.+++|+..++.. +.+...|..+.
T Consensus 196 ~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~--------------~~~~~~d~~~~---- 257 (343)
T 2pjd_A 196 TKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVE--------------GEVFASNVFSE---- 257 (343)
T ss_dssp CCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTTCC--------------CEEEECSTTTT----
T ss_pred CCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCC--------------CEEEEcccccc----
Confidence 4568999999999999988887643 8999999999999999999888743 34455554332
Q ss_pred CCCCCCCEEEEcccccC-----CCChHHHHHHHHHHhccCCCCcc
Q 038343 101 LSAFVPEIILGADILYD-----RSCFPDLVRILAILLNRRKSVSS 140 (191)
Q Consensus 101 ~~~~~fDvIi~~d~ly~-----~~~~~~ll~~l~~ll~~~g~~~~ 140 (191)
..++||+|+++.++++ ......+++.+.++|+|||....
T Consensus 258 -~~~~fD~Iv~~~~~~~g~~~~~~~~~~~l~~~~~~LkpgG~l~i 301 (343)
T 2pjd_A 258 -VKGRFDMIISNPPFHDGMQTSLDAAQTLIRGAVRHLNSGGELRI 301 (343)
T ss_dssp -CCSCEEEEEECCCCCSSSHHHHHHHHHHHHHHGGGEEEEEEEEE
T ss_pred -ccCCeeEEEECCCcccCccCCHHHHHHHHHHHHHhCCCCcEEEE
Confidence 2458999999988764 33467889999999999986543
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.33 E-value=1.5e-11 Score=96.31 Aligned_cols=98 Identities=15% Similarity=0.144 Sum_probs=78.5
Q ss_pred CCCCCCCcEEEeCCCccHHHHHHHhc-C-CCeEEEEcCChHHHHHHHHHHHHh-cCCCCcccccccCCCCeeEEEeecCC
Q 038343 18 PEIFSNKSCFEVGSGVGLVGICLAHV-K-ASKVTLTDGDHLTLANMRSNLELN-QLSTDTSLLESYEDPNVVQCVHLPWE 94 (191)
Q Consensus 18 ~~~~~~~~VLElG~GtG~~~~~la~~-g-~~~v~~tD~~~~~l~~~~~n~~~n-~~~~~~~~~~~~~~~~~i~~~~ldw~ 94 (191)
....++.+|||+|||+|..++.+++. + ..+|+++|+++.+++.+++|++.+ +. .++.+...|+.
T Consensus 106 ~~~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~-------------~~v~~~~~d~~ 172 (275)
T 1yb2_A 106 CGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDI-------------GNVRTSRSDIA 172 (275)
T ss_dssp CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCC-------------TTEEEECSCTT
T ss_pred cCCCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCC-------------CcEEEEECchh
Confidence 34457789999999999999988875 2 349999999999999999999877 53 24777777776
Q ss_pred CCCcCCCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCC
Q 038343 95 SASESGLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKS 137 (191)
Q Consensus 95 ~~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~ 137 (191)
+. +.+++||+|++ +.++...+++.+.++|+|+|.
T Consensus 173 ~~----~~~~~fD~Vi~-----~~~~~~~~l~~~~~~LkpgG~ 206 (275)
T 1yb2_A 173 DF----ISDQMYDAVIA-----DIPDPWNHVQKIASMMKPGSV 206 (275)
T ss_dssp TC----CCSCCEEEEEE-----CCSCGGGSHHHHHHTEEEEEE
T ss_pred cc----CcCCCccEEEE-----cCcCHHHHHHHHHHHcCCCCE
Confidence 53 23467999998 455678899999999999974
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.32 E-value=2.1e-11 Score=93.45 Aligned_cols=101 Identities=17% Similarity=0.127 Sum_probs=79.3
Q ss_pred CCCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCc
Q 038343 19 EIFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASE 98 (191)
Q Consensus 19 ~~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~ 98 (191)
...++.+|||+|||+|..++.+++. ..+|+++|+++.+++.+++|...+++. .++.+...|+.+..
T Consensus 88 ~~~~~~~vldiG~G~G~~~~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~------------~~~~~~~~d~~~~~- 153 (248)
T 2yvl_A 88 NLNKEKRVLEFGTGSGALLAVLSEV-AGEVWTFEAVEEFYKTAQKNLKKFNLG------------KNVKFFNVDFKDAE- 153 (248)
T ss_dssp TCCTTCEEEEECCTTSHHHHHHHHH-SSEEEEECSCHHHHHHHHHHHHHTTCC------------TTEEEECSCTTTSC-
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHh-CCEEEEEecCHHHHHHHHHHHHHcCCC------------CcEEEEEcChhhcc-
Confidence 3447789999999999999988887 459999999999999999999887653 34677777765432
Q ss_pred CCCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCcc
Q 038343 99 SGLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVSS 140 (191)
Q Consensus 99 ~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~~ 140 (191)
....+||+|++ +..+...+++.+.++|+|+|....
T Consensus 154 --~~~~~~D~v~~-----~~~~~~~~l~~~~~~L~~gG~l~~ 188 (248)
T 2yvl_A 154 --VPEGIFHAAFV-----DVREPWHYLEKVHKSLMEGAPVGF 188 (248)
T ss_dssp --CCTTCBSEEEE-----CSSCGGGGHHHHHHHBCTTCEEEE
T ss_pred --cCCCcccEEEE-----CCcCHHHHHHHHHHHcCCCCEEEE
Confidence 13357999997 344677889999999999975443
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.32 E-value=4.3e-12 Score=93.39 Aligned_cols=97 Identities=14% Similarity=0.106 Sum_probs=76.3
Q ss_pred CCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCCC
Q 038343 22 SNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESGL 101 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~~ 101 (191)
++.+|||+|||+|..+..+++.+. +|+++|+++.+++.++++.. ++.+...|+.+.. +
T Consensus 46 ~~~~vLdiG~G~G~~~~~l~~~~~-~v~~~D~~~~~~~~a~~~~~------------------~~~~~~~d~~~~~---~ 103 (195)
T 3cgg_A 46 RGAKILDAGCGQGRIGGYLSKQGH-DVLGTDLDPILIDYAKQDFP------------------EARWVVGDLSVDQ---I 103 (195)
T ss_dssp TTCEEEEETCTTTHHHHHHHHTTC-EEEEEESCHHHHHHHHHHCT------------------TSEEEECCTTTSC---C
T ss_pred CCCeEEEECCCCCHHHHHHHHCCC-cEEEEcCCHHHHHHHHHhCC------------------CCcEEEcccccCC---C
Confidence 677999999999999998888876 99999999999999887642 2455666665432 3
Q ss_pred CCCCCCEEEEc-ccccCC--CChHHHHHHHHHHhccCCCCcc
Q 038343 102 SAFVPEIILGA-DILYDR--SCFPDLVRILAILLNRRKSVSS 140 (191)
Q Consensus 102 ~~~~fDvIi~~-d~ly~~--~~~~~ll~~l~~ll~~~g~~~~ 140 (191)
+.++||+|++. +++++. +....+++.+.++|+|+|....
T Consensus 104 ~~~~~D~i~~~~~~~~~~~~~~~~~~l~~~~~~l~~~G~l~~ 145 (195)
T 3cgg_A 104 SETDFDLIVSAGNVMGFLAEDGREPALANIHRALGADGRAVI 145 (195)
T ss_dssp CCCCEEEEEECCCCGGGSCHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred CCCceeEEEECCcHHhhcChHHHHHHHHHHHHHhCCCCEEEE
Confidence 34689999998 777765 4458899999999999975443
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.32 E-value=2.1e-11 Score=98.80 Aligned_cols=115 Identities=17% Similarity=0.089 Sum_probs=84.4
Q ss_pred HHHHHHhhCCCCCCCCcEEEeCCCccHHHHHHHhcC--CCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCee
Q 038343 9 LLSEFILSFPEIFSNKSCFEVGSGVGLVGICLAHVK--ASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVV 86 (191)
Q Consensus 9 ~L~~~l~~~~~~~~~~~VLElG~GtG~~~~~la~~g--~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i 86 (191)
.++..+.......++.+|||+|||+|.+.+.++..+ ..+|+++|+++.+++.+++|++.+++. .+
T Consensus 190 ~la~~l~~~~~~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~-------------~i 256 (354)
T 3tma_A 190 VLAQALLRLADARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLS-------------WI 256 (354)
T ss_dssp HHHHHHHHHTTCCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCT-------------TC
T ss_pred HHHHHHHHHhCCCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCC-------------ce
Confidence 455555544444577899999999999999888764 248999999999999999999988753 36
Q ss_pred EEEeecCCCCCcCCCCCCCCCEEEEcccccCCCC---------hHHHHHHHHHHhccCCCCcc
Q 038343 87 QCVHLPWESASESGLSAFVPEIILGADILYDRSC---------FPDLVRILAILLNRRKSVSS 140 (191)
Q Consensus 87 ~~~~ldw~~~~~~~~~~~~fDvIi~~d~ly~~~~---------~~~ll~~l~~ll~~~g~~~~ 140 (191)
.+...|..+.. .....||+|+++.+ |.... ...+++.++++|+|+|....
T Consensus 257 ~~~~~D~~~~~---~~~~~~D~Ii~npP-yg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i 315 (354)
T 3tma_A 257 RFLRADARHLP---RFFPEVDRILANPP-HGLRLGRKEGLFHLYWDFLRGALALLPPGGRVAL 315 (354)
T ss_dssp EEEECCGGGGG---GTCCCCSEEEECCC-SCC----CHHHHHHHHHHHHHHHHTSCTTCEEEE
T ss_pred EEEeCChhhCc---cccCCCCEEEECCC-CcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEE
Confidence 77777765432 12346899998544 43322 36789999999999975443
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.32 E-value=8.3e-13 Score=100.08 Aligned_cols=103 Identities=16% Similarity=0.104 Sum_probs=77.5
Q ss_pred CCCCcEEEeCCCccHHHHHHHhc-C-CCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCc
Q 038343 21 FSNKSCFEVGSGVGLVGICLAHV-K-ASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASE 98 (191)
Q Consensus 21 ~~~~~VLElG~GtG~~~~~la~~-g-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~ 98 (191)
.++.+|||+|||+|..++.+++. + ..+|+++|+++.+++.++++++.++.. .++.+...|..+...
T Consensus 63 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~------------~~v~~~~~d~~~~~~ 130 (225)
T 3tr6_A 63 MQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLS------------DKIGLRLSPAKDTLA 130 (225)
T ss_dssp HTCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCT------------TTEEEEESCHHHHHH
T ss_pred hCCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCC------------CceEEEeCCHHHHHH
Confidence 35679999999999999988875 2 349999999999999999999888754 357777766533211
Q ss_pred CC---CCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCC
Q 038343 99 SG---LSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSV 138 (191)
Q Consensus 99 ~~---~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~ 138 (191)
.. ...++||+|+... .......+++.+.++|+|||..
T Consensus 131 ~~~~~~~~~~fD~v~~~~---~~~~~~~~l~~~~~~L~pgG~l 170 (225)
T 3tr6_A 131 ELIHAGQAWQYDLIYIDA---DKANTDLYYEESLKLLREGGLI 170 (225)
T ss_dssp HHHTTTCTTCEEEEEECS---CGGGHHHHHHHHHHHEEEEEEE
T ss_pred HhhhccCCCCccEEEECC---CHHHHHHHHHHHHHhcCCCcEE
Confidence 10 1115899999632 2445788999999999999753
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.32 E-value=7.2e-12 Score=94.23 Aligned_cols=107 Identities=11% Similarity=0.003 Sum_probs=79.9
Q ss_pred HHhhCCCCCCCCcEEEeCCCccHHHHHHHhcC-C-CeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEe
Q 038343 13 FILSFPEIFSNKSCFEVGSGVGLVGICLAHVK-A-SKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVH 90 (191)
Q Consensus 13 ~l~~~~~~~~~~~VLElG~GtG~~~~~la~~g-~-~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ 90 (191)
.+.......++.+|||+|||+|..+..+++.+ . .+|+++|.++.+++.+++++..++.. ++.+..
T Consensus 68 ~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-------------~v~~~~ 134 (215)
T 2yxe_A 68 MMCELLDLKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYD-------------NVIVIV 134 (215)
T ss_dssp HHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCT-------------TEEEEE
T ss_pred HHHHhhCCCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-------------CeEEEE
Confidence 33333344577899999999999999887764 2 49999999999999999998877643 366666
Q ss_pred ecCCCCCcCCCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCccc
Q 038343 91 LPWESASESGLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVSSS 141 (191)
Q Consensus 91 ldw~~~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~~~ 141 (191)
.|...... ...+||+|++..++++.. +.+.++|+|+|.....
T Consensus 135 ~d~~~~~~---~~~~fD~v~~~~~~~~~~------~~~~~~L~pgG~lv~~ 176 (215)
T 2yxe_A 135 GDGTLGYE---PLAPYDRIYTTAAGPKIP------EPLIRQLKDGGKLLMP 176 (215)
T ss_dssp SCGGGCCG---GGCCEEEEEESSBBSSCC------HHHHHTEEEEEEEEEE
T ss_pred CCcccCCC---CCCCeeEEEECCchHHHH------HHHHHHcCCCcEEEEE
Confidence 66533221 135799999999888654 5889999999865543
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=3.1e-11 Score=96.81 Aligned_cols=100 Identities=18% Similarity=0.033 Sum_probs=81.2
Q ss_pred CCCcEEEeCCCccHHHHHHHhcC-CCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCC
Q 038343 22 SNKSCFEVGSGVGLVGICLAHVK-ASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESG 100 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~g-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~ 100 (191)
+..+|||+|||+|..+..+++.. ..+++++|+ +.+++.+++++...++. .++.+...|+.+.
T Consensus 169 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~------------~~v~~~~~d~~~~---- 231 (332)
T 3i53_A 169 ALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDL-QGPASAAHRRFLDTGLS------------GRAQVVVGSFFDP---- 231 (332)
T ss_dssp GGSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCT------------TTEEEEECCTTSC----
T ss_pred CCCEEEEeCCChhHHHHHHHHHCCCCeEEEecC-HHHHHHHHHhhhhcCcC------------cCeEEecCCCCCC----
Confidence 45699999999999988776643 348999999 99999999998876654 4688888887632
Q ss_pred CCCCCCCEEEEcccccCCCC--hHHHHHHHHHHhccCCCCc
Q 038343 101 LSAFVPEIILGADILYDRSC--FPDLVRILAILLNRRKSVS 139 (191)
Q Consensus 101 ~~~~~fDvIi~~d~ly~~~~--~~~ll~~l~~ll~~~g~~~ 139 (191)
.+. +||+|++..++++.++ ...+++.+++.|+|||...
T Consensus 232 ~p~-~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~ 271 (332)
T 3i53_A 232 LPA-GAGGYVLSAVLHDWDDLSAVAILRRCAEAAGSGGVVL 271 (332)
T ss_dssp CCC-SCSEEEEESCGGGSCHHHHHHHHHHHHHHHTTTCEEE
T ss_pred CCC-CCcEEEEehhhccCCHHHHHHHHHHHHHhcCCCCEEE
Confidence 222 7999999999998776 4889999999999997644
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.31 E-value=3.7e-12 Score=97.03 Aligned_cols=106 Identities=12% Similarity=-0.018 Sum_probs=79.4
Q ss_pred HHHHHhhCCCCCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEE
Q 038343 10 LSEFILSFPEIFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCV 89 (191)
Q Consensus 10 L~~~l~~~~~~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~ 89 (191)
+.+++.... .++.+|||+|||+|..+..+++.+. +|+++|+++.+++.++++. .++.+.
T Consensus 30 ~~~~l~~~~--~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~~D~s~~~~~~a~~~~------------------~~~~~~ 88 (239)
T 3bxo_A 30 IADLVRSRT--PEASSLLDVACGTGTHLEHFTKEFG-DTAGLELSEDMLTHARKRL------------------PDATLH 88 (239)
T ss_dssp HHHHHHHHC--TTCCEEEEETCTTSHHHHHHHHHHS-EEEEEESCHHHHHHHHHHC------------------TTCEEE
T ss_pred HHHHHHHhc--CCCCeEEEecccCCHHHHHHHHhCC-cEEEEeCCHHHHHHHHHhC------------------CCCEEE
Confidence 344444332 3567999999999999998888876 8999999999999988753 125666
Q ss_pred eecCCCCCcCCCCCCCCCEEEE-cccccCC---CChHHHHHHHHHHhccCCCCcc
Q 038343 90 HLPWESASESGLSAFVPEIILG-ADILYDR---SCFPDLVRILAILLNRRKSVSS 140 (191)
Q Consensus 90 ~ldw~~~~~~~~~~~~fDvIi~-~d~ly~~---~~~~~ll~~l~~ll~~~g~~~~ 140 (191)
..|..+.. . .++||+|++ .+++++. .+...+++.+.++|+|+|....
T Consensus 89 ~~d~~~~~---~-~~~~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~ 139 (239)
T 3bxo_A 89 QGDMRDFR---L-GRKFSAVVSMFSSVGYLKTTEELGAAVASFAEHLEPGGVVVV 139 (239)
T ss_dssp ECCTTTCC---C-SSCEEEEEECTTGGGGCCSHHHHHHHHHHHHHTEEEEEEEEE
T ss_pred ECCHHHcc---c-CCCCcEEEEcCchHhhcCCHHHHHHHHHHHHHhcCCCeEEEE
Confidence 77765432 1 458999995 5588776 4567889999999999986543
|
| >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.31 E-value=5.4e-12 Score=98.84 Aligned_cols=96 Identities=18% Similarity=0.143 Sum_probs=77.4
Q ss_pred CCCCcEEEeCCCccHHHHHHHhc-CCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcC
Q 038343 21 FSNKSCFEVGSGVGLVGICLAHV-KASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASES 99 (191)
Q Consensus 21 ~~~~~VLElG~GtG~~~~~la~~-g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~ 99 (191)
.++.+|||+|||+|..++.+++. +..+|+++|+++.+++.+++|++.|++. ++.+...|..+. ..
T Consensus 118 ~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~l~-------------~~~~~~~d~~~~-~~ 183 (272)
T 3a27_A 118 NENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKLN-------------NVIPILADNRDV-EL 183 (272)
T ss_dssp CTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTTCS-------------SEEEEESCGGGC-CC
T ss_pred CCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-------------CEEEEECChHHc-Cc
Confidence 46789999999999999988886 3459999999999999999999999864 356777776544 21
Q ss_pred CCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCC
Q 038343 100 GLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKS 137 (191)
Q Consensus 100 ~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~ 137 (191)
..+||+|++..+. ....++..+.+.|+|+|.
T Consensus 184 ---~~~~D~Vi~d~p~----~~~~~l~~~~~~LkpgG~ 214 (272)
T 3a27_A 184 ---KDVADRVIMGYVH----KTHKFLDKTFEFLKDRGV 214 (272)
T ss_dssp ---TTCEEEEEECCCS----SGGGGHHHHHHHEEEEEE
T ss_pred ---cCCceEEEECCcc----cHHHHHHHHHHHcCCCCE
Confidence 3579999985432 677889999999999963
|
| >2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=8e-11 Score=97.70 Aligned_cols=104 Identities=19% Similarity=0.188 Sum_probs=76.8
Q ss_pred HHHHHHHHhhCCCCCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCee
Q 038343 7 SLLLSEFILSFPEIFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVV 86 (191)
Q Consensus 7 a~~L~~~l~~~~~~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i 86 (191)
+..|.+++.. ..++.+|||+|||+|.+++.+++.+. +|+++|+++.+++.+++|++.|++. +
T Consensus 278 ~e~l~~~~~~---~~~~~~VLDlgcG~G~~sl~la~~~~-~V~gvD~s~~ai~~A~~n~~~ngl~--------------v 339 (425)
T 2jjq_A 278 AVNLVRKVSE---LVEGEKILDMYSGVGTFGIYLAKRGF-NVKGFDSNEFAIEMARRNVEINNVD--------------A 339 (425)
T ss_dssp HHHHHHHHHH---HCCSSEEEEETCTTTHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHTCC--------------E
T ss_pred HHHHHHHhhc---cCCCCEEEEeeccchHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHcCCc--------------E
Confidence 4455555554 34677999999999999999998854 9999999999999999999988742 6
Q ss_pred EEEeecCCCCCcCCCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCC
Q 038343 87 QCVHLPWESASESGLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRK 136 (191)
Q Consensus 87 ~~~~ldw~~~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g 136 (191)
.+...|..+... .+||+|++.. -+. ...+.+++.+.. |+|+|
T Consensus 340 ~~~~~d~~~~~~-----~~fD~Vv~dP-Pr~-g~~~~~~~~l~~-l~p~g 381 (425)
T 2jjq_A 340 EFEVASDREVSV-----KGFDTVIVDP-PRA-GLHPRLVKRLNR-EKPGV 381 (425)
T ss_dssp EEEECCTTTCCC-----TTCSEEEECC-CTT-CSCHHHHHHHHH-HCCSE
T ss_pred EEEECChHHcCc-----cCCCEEEEcC-Ccc-chHHHHHHHHHh-cCCCc
Confidence 677777765432 2799999843 332 234457777764 77773
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.31 E-value=1.4e-11 Score=108.19 Aligned_cols=104 Identities=11% Similarity=-0.008 Sum_probs=81.8
Q ss_pred CCCcEEEeCCCccHHHHHHHhcCC--CeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcC
Q 038343 22 SNKSCFEVGSGVGLVGICLAHVKA--SKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASES 99 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~g~--~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~ 99 (191)
++.+|||+|||+|..+..+++.+. .+|+++|+++.+++.+++++........ ....++.+...|..+..
T Consensus 721 ~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr-------~gl~nVefiqGDa~dLp-- 791 (950)
T 3htx_A 721 SASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEA-------CNVKSATLYDGSILEFD-- 791 (950)
T ss_dssp CCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTC-------SSCSEEEEEESCTTSCC--
T ss_pred CCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhh-------cCCCceEEEECchHhCC--
Confidence 677999999999999999999873 4999999999999999987764321000 01136888888876543
Q ss_pred CCCCCCCCEEEEcccccCCCChH--HHHHHHHHHhccC
Q 038343 100 GLSAFVPEIILGADILYDRSCFP--DLVRILAILLNRR 135 (191)
Q Consensus 100 ~~~~~~fDvIi~~d~ly~~~~~~--~ll~~l~~ll~~~ 135 (191)
...++||+|++.+++++..+.. .+++.+.++|+||
T Consensus 792 -~~d~sFDlVV~~eVLeHL~dp~l~~~L~eI~RvLKPG 828 (950)
T 3htx_A 792 -SRLHDVDIGTCLEVIEHMEEDQACEFGEKVLSLFHPK 828 (950)
T ss_dssp -TTSCSCCEEEEESCGGGSCHHHHHHHHHHHHHTTCCS
T ss_pred -cccCCeeEEEEeCchhhCChHHHHHHHHHHHHHcCCC
Confidence 2446899999999999987655 5899999999998
|
| >3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.31 E-value=7.8e-12 Score=98.61 Aligned_cols=116 Identities=14% Similarity=0.082 Sum_probs=80.7
Q ss_pred ccHHHHHHHHhhCCCCCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCC
Q 038343 5 PSSLLLSEFILSFPEIFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPN 84 (191)
Q Consensus 5 ~~a~~L~~~l~~~~~~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~ 84 (191)
.++..|...+.......++++|||+|||||.++..+++.|+.+|+++|.++.||+.+.++ +.
T Consensus 68 rg~~Kl~~~l~~~~~~~~g~~vLDiGcGTG~~t~~L~~~ga~~V~aVDvs~~mL~~a~r~---~~--------------- 129 (291)
T 3hp7_A 68 RGGLKLEKALAVFNLSVEDMITIDIGASTGGFTDVMLQNGAKLVYAVDVGTNQLVWKLRQ---DD--------------- 129 (291)
T ss_dssp TTHHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSSSCSCHHHHT---CT---------------
T ss_pred chHHHHHHHHHhcCCCccccEEEecCCCccHHHHHHHhCCCCEEEEEECCHHHHHHHHHh---Cc---------------
Confidence 467788888877655567889999999999999988888888999999999998764321 11
Q ss_pred eeEE-EeecCCCCCcCCCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCccc
Q 038343 85 VVQC-VHLPWESASESGLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVSSS 141 (191)
Q Consensus 85 ~i~~-~~ldw~~~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~~~ 141 (191)
++.. ...+........++..+||+|++.-.++ .+..++..+.++|+|+|...++
T Consensus 130 rv~~~~~~ni~~l~~~~l~~~~fD~v~~d~sf~---sl~~vL~e~~rvLkpGG~lv~l 184 (291)
T 3hp7_A 130 RVRSMEQYNFRYAEPVDFTEGLPSFASIDVSFI---SLNLILPALAKILVDGGQVVAL 184 (291)
T ss_dssp TEEEECSCCGGGCCGGGCTTCCCSEEEECCSSS---CGGGTHHHHHHHSCTTCEEEEE
T ss_pred ccceecccCceecchhhCCCCCCCEEEEEeeHh---hHHHHHHHHHHHcCcCCEEEEE
Confidence 1111 1111111111122334599999743333 4688999999999999987765
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.31 E-value=1.3e-11 Score=94.09 Aligned_cols=104 Identities=8% Similarity=-0.010 Sum_probs=76.1
Q ss_pred CCCCCcEEEeCCCccHHHHHHHhc-C-CCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCC
Q 038343 20 IFSNKSCFEVGSGVGLVGICLAHV-K-ASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESAS 97 (191)
Q Consensus 20 ~~~~~~VLElG~GtG~~~~~la~~-g-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~ 97 (191)
..++.+|||+|||+|..+..+++. | ..+|+++|+++.+++.+.++++.+. ++.+...|..+..
T Consensus 75 ~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~~---------------~v~~~~~d~~~~~ 139 (233)
T 2ipx_A 75 IKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKRT---------------NIIPVIEDARHPH 139 (233)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHCT---------------TEEEECSCTTCGG
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhccC---------------CeEEEEcccCChh
Confidence 446789999999999999988775 3 3589999999999988888877652 3666777765432
Q ss_pred cCCCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCcc
Q 038343 98 ESGLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVSS 140 (191)
Q Consensus 98 ~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~~ 140 (191)
.......+||+|++. +. .+.....++..+.++|+|+|....
T Consensus 140 ~~~~~~~~~D~V~~~-~~-~~~~~~~~~~~~~~~LkpgG~l~i 180 (233)
T 2ipx_A 140 KYRMLIAMVDVIFAD-VA-QPDQTRIVALNAHTFLRNGGHFVI 180 (233)
T ss_dssp GGGGGCCCEEEEEEC-CC-CTTHHHHHHHHHHHHEEEEEEEEE
T ss_pred hhcccCCcEEEEEEc-CC-CccHHHHHHHHHHHHcCCCeEEEE
Confidence 111234589999984 33 333445668889999999986554
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 | Back alignment and structure |
|---|
Probab=99.30 E-value=7.6e-12 Score=99.97 Aligned_cols=109 Identities=12% Similarity=0.041 Sum_probs=83.1
Q ss_pred HHHHhhCCCCCCCCcEEEeCCCccHHHHHHHhcCC--CeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEE
Q 038343 11 SEFILSFPEIFSNKSCFEVGSGVGLVGICLAHVKA--SKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQC 88 (191)
Q Consensus 11 ~~~l~~~~~~~~~~~VLElG~GtG~~~~~la~~g~--~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~ 88 (191)
...+.......++.+|||+|||+|..++.+++.+. .+|+++|+++.+++.++++++.++.. ++.+
T Consensus 64 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~-------------~v~~ 130 (317)
T 1dl5_A 64 MALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIE-------------NVIF 130 (317)
T ss_dssp HHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCC-------------SEEE
T ss_pred HHHHHHhcCCCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCC-------------CeEE
Confidence 33444433445788999999999999998887654 36999999999999999999887754 3777
Q ss_pred EeecCCCCCcCCCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCccc
Q 038343 89 VHLPWESASESGLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVSSS 141 (191)
Q Consensus 89 ~~ldw~~~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~~~ 141 (191)
...|..+... ..++||+|++..++.+.. +.+.++|+|+|.....
T Consensus 131 ~~~d~~~~~~---~~~~fD~Iv~~~~~~~~~------~~~~~~LkpgG~lvi~ 174 (317)
T 1dl5_A 131 VCGDGYYGVP---EFSPYDVIFVTVGVDEVP------ETWFTQLKEGGRVIVP 174 (317)
T ss_dssp EESCGGGCCG---GGCCEEEEEECSBBSCCC------HHHHHHEEEEEEEEEE
T ss_pred EECChhhccc---cCCCeEEEEEcCCHHHHH------HHHHHhcCCCcEEEEE
Confidence 7777654322 235799999998888665 6788899999876544
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=99.30 E-value=6.2e-12 Score=94.95 Aligned_cols=98 Identities=10% Similarity=0.063 Sum_probs=77.3
Q ss_pred CCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCC
Q 038343 21 FSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESG 100 (191)
Q Consensus 21 ~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~ 100 (191)
.++.+|||+|||+|..+..+++.+ .+|+++|+++.+++.++++. ..+...|..+.. ..
T Consensus 31 ~~~~~vLdiG~G~G~~~~~l~~~~-~~~~~~D~~~~~~~~~~~~~--------------------~~~~~~d~~~~~-~~ 88 (230)
T 3cc8_A 31 KEWKEVLDIGCSSGALGAAIKENG-TRVSGIEAFPEAAEQAKEKL--------------------DHVVLGDIETMD-MP 88 (230)
T ss_dssp TTCSEEEEETCTTSHHHHHHHTTT-CEEEEEESSHHHHHHHHTTS--------------------SEEEESCTTTCC-CC
T ss_pred cCCCcEEEeCCCCCHHHHHHHhcC-CeEEEEeCCHHHHHHHHHhC--------------------CcEEEcchhhcC-CC
Confidence 367799999999999999888886 59999999999988876542 123445544321 12
Q ss_pred CCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCcc
Q 038343 101 LSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVSS 140 (191)
Q Consensus 101 ~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~~ 140 (191)
+.+++||+|++.+++++..+...+++.+.++|+|+|....
T Consensus 89 ~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~~gG~l~~ 128 (230)
T 3cc8_A 89 YEEEQFDCVIFGDVLEHLFDPWAVIEKVKPYIKQNGVILA 128 (230)
T ss_dssp SCTTCEEEEEEESCGGGSSCHHHHHHHTGGGEEEEEEEEE
T ss_pred CCCCccCEEEECChhhhcCCHHHHHHHHHHHcCCCCEEEE
Confidence 3456899999999999999999999999999999976544
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.30 E-value=2.6e-12 Score=97.98 Aligned_cols=103 Identities=8% Similarity=0.092 Sum_probs=78.8
Q ss_pred CCCcEEEeCCCccHHHHHHHhcC-CCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCC
Q 038343 22 SNKSCFEVGSGVGLVGICLAHVK-ASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESG 100 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~g-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~ 100 (191)
++.+|||+|||+|..++.+++.. ..+|+++|+++.+++.+++++..++.. .++.+...|..+.....
T Consensus 54 ~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~------------~~v~~~~~d~~~~~~~~ 121 (233)
T 2gpy_A 54 APARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLE------------SRIELLFGDALQLGEKL 121 (233)
T ss_dssp CCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCT------------TTEEEECSCGGGSHHHH
T ss_pred CCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCC------------CcEEEEECCHHHHHHhc
Confidence 56799999999999999887763 349999999999999999999887754 35777777665421111
Q ss_pred CCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCc
Q 038343 101 LSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVS 139 (191)
Q Consensus 101 ~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~ 139 (191)
...++||+|++.... .....+++.+.++|+|||...
T Consensus 122 ~~~~~fD~I~~~~~~---~~~~~~l~~~~~~L~pgG~lv 157 (233)
T 2gpy_A 122 ELYPLFDVLFIDAAK---GQYRRFFDMYSPMVRPGGLIL 157 (233)
T ss_dssp TTSCCEEEEEEEGGG---SCHHHHHHHHGGGEEEEEEEE
T ss_pred ccCCCccEEEECCCH---HHHHHHHHHHHHHcCCCeEEE
Confidence 113579999986543 367899999999999998544
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.30 E-value=3e-11 Score=94.54 Aligned_cols=98 Identities=14% Similarity=0.018 Sum_probs=77.8
Q ss_pred CCCCCCcEEEeCCCccHHHHHHHhc-C-CCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCC
Q 038343 19 EIFSNKSCFEVGSGVGLVGICLAHV-K-ASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESA 96 (191)
Q Consensus 19 ~~~~~~~VLElG~GtG~~~~~la~~-g-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~ 96 (191)
...++.+|||+|||+|..++.+++. + ..+|+++|+++.+++.+++|++.++.. .++.+...|+.+.
T Consensus 109 ~~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~------------~~v~~~~~d~~~~ 176 (277)
T 1o54_A 109 DVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLI------------ERVTIKVRDISEG 176 (277)
T ss_dssp TCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCG------------GGEEEECCCGGGC
T ss_pred CCCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCC------------CCEEEEECCHHHc
Confidence 3446789999999999999988776 4 359999999999999999999887653 2467777776543
Q ss_pred CcCCCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCC
Q 038343 97 SESGLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKS 137 (191)
Q Consensus 97 ~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~ 137 (191)
+..++||+|++ +.+....+++.+.++|+|+|.
T Consensus 177 ----~~~~~~D~V~~-----~~~~~~~~l~~~~~~L~pgG~ 208 (277)
T 1o54_A 177 ----FDEKDVDALFL-----DVPDPWNYIDKCWEALKGGGR 208 (277)
T ss_dssp ----CSCCSEEEEEE-----CCSCGGGTHHHHHHHEEEEEE
T ss_pred ----ccCCccCEEEE-----CCcCHHHHHHHHHHHcCCCCE
Confidence 23457999997 345677899999999999974
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=3e-11 Score=98.49 Aligned_cols=102 Identities=13% Similarity=0.117 Sum_probs=82.8
Q ss_pred CCCCcEEEeCCCccHHHHHHHhcCC-CeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcC
Q 038343 21 FSNKSCFEVGSGVGLVGICLAHVKA-SKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASES 99 (191)
Q Consensus 21 ~~~~~VLElG~GtG~~~~~la~~g~-~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~ 99 (191)
.+..+|||+|||+|..+..+++... .+++++|+ +.+++.+++++...++. .++.+...|+.+.
T Consensus 201 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~l~------------~~v~~~~~d~~~~--- 264 (369)
T 3gwz_A 201 SGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLER-PPVAEEARELLTGRGLA------------DRCEILPGDFFET--- 264 (369)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCT------------TTEEEEECCTTTC---
T ss_pred ccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcC-HHHHHHHHHhhhhcCcC------------CceEEeccCCCCC---
Confidence 3567999999999999987777532 38999999 99999999998877654 4688888887632
Q ss_pred CCCCCCCCEEEEcccccCCCChH--HHHHHHHHHhccCCCCcc
Q 038343 100 GLSAFVPEIILGADILYDRSCFP--DLVRILAILLNRRKSVSS 140 (191)
Q Consensus 100 ~~~~~~fDvIi~~d~ly~~~~~~--~ll~~l~~ll~~~g~~~~ 140 (191)
++. .||+|++..++++.++.. .+++.+++.|+|+|....
T Consensus 265 -~p~-~~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i 305 (369)
T 3gwz_A 265 -IPD-GADVYLIKHVLHDWDDDDVVRILRRIATAMKPDSRLLV 305 (369)
T ss_dssp -CCS-SCSEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEE
T ss_pred -CCC-CceEEEhhhhhccCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence 222 799999999999887665 799999999999976543
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.29 E-value=1e-11 Score=94.39 Aligned_cols=105 Identities=11% Similarity=0.032 Sum_probs=79.0
Q ss_pred HHHhhCCCCCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEee
Q 038343 12 EFILSFPEIFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHL 91 (191)
Q Consensus 12 ~~l~~~~~~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~l 91 (191)
..+.......++.+|||+|||+|..+..+++.+ .+|+++|+++.+++.+++++..++ ++.+...
T Consensus 60 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~-~~v~~vD~~~~~~~~a~~~~~~~~---------------~v~~~~~ 123 (231)
T 1vbf_A 60 IFMLDELDLHKGQKVLEIGTGIGYYTALIAEIV-DKVVSVEINEKMYNYASKLLSYYN---------------NIKLILG 123 (231)
T ss_dssp HHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHS-SEEEEEESCHHHHHHHHHHHTTCS---------------SEEEEES
T ss_pred HHHHHhcCCCCCCEEEEEcCCCCHHHHHHHHHc-CEEEEEeCCHHHHHHHHHHHhhcC---------------CeEEEEC
Confidence 333333344577899999999999999888887 599999999999999998876543 3566676
Q ss_pred cCCCCCcCCCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCccc
Q 038343 92 PWESASESGLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVSSS 141 (191)
Q Consensus 92 dw~~~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~~~ 141 (191)
|..+... ..++||+|++..++++.. ..+.++|+|+|.....
T Consensus 124 d~~~~~~---~~~~fD~v~~~~~~~~~~------~~~~~~L~pgG~l~~~ 164 (231)
T 1vbf_A 124 DGTLGYE---EEKPYDRVVVWATAPTLL------CKPYEQLKEGGIMILP 164 (231)
T ss_dssp CGGGCCG---GGCCEEEEEESSBBSSCC------HHHHHTEEEEEEEEEE
T ss_pred Ccccccc---cCCCccEEEECCcHHHHH------HHHHHHcCCCcEEEEE
Confidence 6654221 235799999999888654 4688999999865544
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.29 E-value=4.3e-11 Score=92.25 Aligned_cols=99 Identities=18% Similarity=0.121 Sum_probs=78.5
Q ss_pred CCCCCCcEEEeCCCccHHHHHHHhc-C-CCeEEEEcCChHHHHHHHHHHHHh-cCCCCcccccccCCCCeeEEEeecCCC
Q 038343 19 EIFSNKSCFEVGSGVGLVGICLAHV-K-ASKVTLTDGDHLTLANMRSNLELN-QLSTDTSLLESYEDPNVVQCVHLPWES 95 (191)
Q Consensus 19 ~~~~~~~VLElG~GtG~~~~~la~~-g-~~~v~~tD~~~~~l~~~~~n~~~n-~~~~~~~~~~~~~~~~~i~~~~ldw~~ 95 (191)
...++.+|||+|||+|..++.+++. + ..+|+++|.++.+++.++++++.+ +. .++.+...|+.+
T Consensus 93 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~-------------~~v~~~~~d~~~ 159 (258)
T 2pwy_A 93 DLAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQV-------------ENVRFHLGKLEE 159 (258)
T ss_dssp TCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCC-------------CCEEEEESCGGG
T ss_pred CCCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCC-------------CCEEEEECchhh
Confidence 3457789999999999999988876 4 359999999999999999999887 52 357777777654
Q ss_pred CCcCCCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCC
Q 038343 96 ASESGLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSV 138 (191)
Q Consensus 96 ~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~ 138 (191)
. .+.+++||+|++ +..+...+++.+.++|+|+|..
T Consensus 160 ~---~~~~~~~D~v~~-----~~~~~~~~l~~~~~~L~~gG~l 194 (258)
T 2pwy_A 160 A---ELEEAAYDGVAL-----DLMEPWKVLEKAALALKPDRFL 194 (258)
T ss_dssp C---CCCTTCEEEEEE-----ESSCGGGGHHHHHHHEEEEEEE
T ss_pred c---CCCCCCcCEEEE-----CCcCHHHHHHHHHHhCCCCCEE
Confidence 3 134467999997 3456778999999999999743
|
| >2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=7e-13 Score=108.81 Aligned_cols=106 Identities=16% Similarity=0.023 Sum_probs=77.0
Q ss_pred CCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCC
Q 038343 21 FSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESG 100 (191)
Q Consensus 21 ~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~ 100 (191)
.++.+|||+|||+|..++.+++.|+++|+++|+++.+++.+++|++.|++.. .++.+...|..+.....
T Consensus 211 ~~~~~VLDl~cGtG~~sl~la~~ga~~V~~vD~s~~al~~A~~N~~~n~~~~-----------~~v~~~~~D~~~~l~~~ 279 (385)
T 2b78_A 211 AAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDM-----------ANHQLVVMDVFDYFKYA 279 (385)
T ss_dssp TBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCC-----------TTEEEEESCHHHHHHHH
T ss_pred cCCCeEEEEeeccCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCc-----------cceEEEECCHHHHHHHH
Confidence 3678999999999999999998887799999999999999999999998641 14677776654321100
Q ss_pred -CCCCCCCEEEEcccccC-----CC----ChHHHHHHHHHHhccCCC
Q 038343 101 -LSAFVPEIILGADILYD-----RS----CFPDLVRILAILLNRRKS 137 (191)
Q Consensus 101 -~~~~~fDvIi~~d~ly~-----~~----~~~~ll~~l~~ll~~~g~ 137 (191)
....+||+|++....+. .. .+..+++.+.++|+|+|.
T Consensus 280 ~~~~~~fD~Ii~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~ 326 (385)
T 2b78_A 280 RRHHLTYDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGL 326 (385)
T ss_dssp HHTTCCEEEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEE
T ss_pred HHhCCCccEEEECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcE
Confidence 01347999998444331 11 234466777889999974
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=3.7e-12 Score=98.41 Aligned_cols=103 Identities=12% Similarity=0.060 Sum_probs=77.3
Q ss_pred CCCcEEEeCCCccHHHHHHHhc-C-CCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcC
Q 038343 22 SNKSCFEVGSGVGLVGICLAHV-K-ASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASES 99 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~-g-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~ 99 (191)
++++|||+|||+|..++.+++. . ..+|+++|+++.+++.++++++.++.. .++.+...|..+....
T Consensus 79 ~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~------------~~i~~~~gda~~~l~~ 146 (247)
T 1sui_A 79 NAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVD------------HKIDFREGPALPVLDE 146 (247)
T ss_dssp TCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCG------------GGEEEEESCHHHHHHH
T ss_pred CcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC------------CCeEEEECCHHHHHHH
Confidence 5679999999999999988775 2 249999999999999999999887753 3577776665332110
Q ss_pred C----CCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCc
Q 038343 100 G----LSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVS 139 (191)
Q Consensus 100 ~----~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~ 139 (191)
. ...++||+|++.. .......+++.+.++|+|||...
T Consensus 147 l~~~~~~~~~fD~V~~d~---~~~~~~~~l~~~~~~LkpGG~lv 187 (247)
T 1sui_A 147 MIKDEKNHGSYDFIFVDA---DKDNYLNYHKRLIDLVKVGGVIG 187 (247)
T ss_dssp HHHSGGGTTCBSEEEECS---CSTTHHHHHHHHHHHBCTTCCEE
T ss_pred HHhccCCCCCEEEEEEcC---chHHHHHHHHHHHHhCCCCeEEE
Confidence 0 0135799999742 24568899999999999998543
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.28 E-value=1e-11 Score=94.48 Aligned_cols=102 Identities=15% Similarity=0.135 Sum_probs=76.0
Q ss_pred CCcEEEeCCCccHHHHHHHhc-C-CCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCC
Q 038343 23 NKSCFEVGSGVGLVGICLAHV-K-ASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESG 100 (191)
Q Consensus 23 ~~~VLElG~GtG~~~~~la~~-g-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~ 100 (191)
+.+|||+|||+|..++.+++. + ..+|+++|+++.+++.+++|++.++... .++.+...|..+... .
T Consensus 57 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~-----------~~i~~~~gda~~~l~-~ 124 (221)
T 3dr5_A 57 STGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSP-----------SRVRFLLSRPLDVMS-R 124 (221)
T ss_dssp CCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCG-----------GGEEEECSCHHHHGG-G
T ss_pred CCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCc-----------CcEEEEEcCHHHHHH-H
Confidence 349999999999999988773 2 3499999999999999999999877531 246777665433211 1
Q ss_pred CCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCc
Q 038343 101 LSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVS 139 (191)
Q Consensus 101 ~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~ 139 (191)
+.+++||+|++.. .......+++.+.++|+|||...
T Consensus 125 ~~~~~fD~V~~d~---~~~~~~~~l~~~~~~LkpGG~lv 160 (221)
T 3dr5_A 125 LANDSYQLVFGQV---SPMDLKALVDAAWPLLRRGGALV 160 (221)
T ss_dssp SCTTCEEEEEECC---CTTTHHHHHHHHHHHEEEEEEEE
T ss_pred hcCCCcCeEEEcC---cHHHHHHHHHHHHHHcCCCcEEE
Confidence 2246899998742 34567789999999999997433
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A | Back alignment and structure |
|---|
Probab=99.28 E-value=1.8e-11 Score=92.89 Aligned_cols=105 Identities=12% Similarity=0.008 Sum_probs=75.5
Q ss_pred CCCCCcEEEeCCCccHHHHHHHhc-CC-CeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCC
Q 038343 20 IFSNKSCFEVGSGVGLVGICLAHV-KA-SKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESAS 97 (191)
Q Consensus 20 ~~~~~~VLElG~GtG~~~~~la~~-g~-~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~ 97 (191)
..++.+|||+|||+|..++.+++. |. .+|+++|.++.+++.++++++.+ .++.+...|..+..
T Consensus 71 ~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~---------------~~v~~~~~d~~~~~ 135 (227)
T 1g8a_A 71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEER---------------RNIVPILGDATKPE 135 (227)
T ss_dssp CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSC---------------TTEEEEECCTTCGG
T ss_pred CCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhcc---------------CCCEEEEccCCCcc
Confidence 446789999999999999988865 43 59999999999999998887654 14677777765431
Q ss_pred cCCCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCccc
Q 038343 98 ESGLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVSSS 141 (191)
Q Consensus 98 ~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~~~ 141 (191)
.......+||+|++.-. .+.....+++.+.++|+|||.....
T Consensus 136 ~~~~~~~~~D~v~~~~~--~~~~~~~~l~~~~~~LkpgG~l~~~ 177 (227)
T 1g8a_A 136 EYRALVPKVDVIFEDVA--QPTQAKILIDNAEVYLKRGGYGMIA 177 (227)
T ss_dssp GGTTTCCCEEEEEECCC--STTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred hhhcccCCceEEEECCC--CHhHHHHHHHHHHHhcCCCCEEEEE
Confidence 10111247999997433 3333345599999999999865544
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=2.5e-11 Score=98.76 Aligned_cols=102 Identities=15% Similarity=0.086 Sum_probs=82.2
Q ss_pred CCCCcEEEeCCCccHHHHHHHhcCC-CeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcC
Q 038343 21 FSNKSCFEVGSGVGLVGICLAHVKA-SKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASES 99 (191)
Q Consensus 21 ~~~~~VLElG~GtG~~~~~la~~g~-~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~ 99 (191)
.++.+|||+|||+|..+..+++... .+++++|+ +.+++.+++++..++.. .++.+...|+.+..
T Consensus 181 ~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~------------~~v~~~~~d~~~~~-- 245 (374)
T 1qzz_A 181 SAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLA------------DRVTVAEGDFFKPL-- 245 (374)
T ss_dssp TTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCT------------TTEEEEECCTTSCC--
T ss_pred CCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeC-HHHHHHHHHHHHhcCCC------------CceEEEeCCCCCcC--
Confidence 3567999999999999998777642 38999999 99999999999887654 46888888876422
Q ss_pred CCCCCCCCEEEEcccccCCCChH--HHHHHHHHHhccCCCCcc
Q 038343 100 GLSAFVPEIILGADILYDRSCFP--DLVRILAILLNRRKSVSS 140 (191)
Q Consensus 100 ~~~~~~fDvIi~~d~ly~~~~~~--~ll~~l~~ll~~~g~~~~ 140 (191)
+ ..||+|++..++++..+.. .+++.+.++|+|||....
T Consensus 246 --~-~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i 285 (374)
T 1qzz_A 246 --P-VTADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLV 285 (374)
T ss_dssp --S-CCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred --C-CCCCEEEEeccccCCCHHHHHHHHHHHHHhcCCCcEEEE
Confidence 2 2499999999998876654 899999999999976543
|
| >2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} | Back alignment and structure |
|---|
Probab=99.27 E-value=6.1e-11 Score=96.84 Aligned_cols=101 Identities=11% Similarity=0.048 Sum_probs=79.4
Q ss_pred CCCCcEEEeCCCccHHHHHHHhcCC-CeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcC
Q 038343 21 FSNKSCFEVGSGVGLVGICLAHVKA-SKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASES 99 (191)
Q Consensus 21 ~~~~~VLElG~GtG~~~~~la~~g~-~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~ 99 (191)
.++.+|||+| |+|.+++.+++.++ .+|+++|+++.+++.+++|++.+++. ++.+...|+.+....
T Consensus 171 ~~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~~-------------~v~~~~~D~~~~l~~ 236 (373)
T 2qm3_A 171 LENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGYE-------------DIEIFTFDLRKPLPD 236 (373)
T ss_dssp STTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTCC-------------CEEEECCCTTSCCCT
T ss_pred CCCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC-------------CEEEEEChhhhhchh
Confidence 3678999999 99999998888876 69999999999999999999988753 477888887663211
Q ss_pred CCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCC
Q 038343 100 GLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKS 137 (191)
Q Consensus 100 ~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~ 137 (191)
. .+++||+|+++.+ |.......+++.+.++|+|+|.
T Consensus 237 ~-~~~~fD~Vi~~~p-~~~~~~~~~l~~~~~~LkpgG~ 272 (373)
T 2qm3_A 237 Y-ALHKFDTFITDPP-ETLEAIRAFVGRGIATLKGPRC 272 (373)
T ss_dssp T-TSSCBSEEEECCC-SSHHHHHHHHHHHHHTBCSTTC
T ss_pred h-ccCCccEEEECCC-CchHHHHHHHHHHHHHcccCCe
Confidence 1 1357999998654 3322357889999999999974
|
| >3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A | Back alignment and structure |
|---|
Probab=99.27 E-value=2.5e-11 Score=95.14 Aligned_cols=102 Identities=11% Similarity=0.043 Sum_probs=74.2
Q ss_pred CCCcEEEeCCCccHHHHHHHhc--CCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcC
Q 038343 22 SNKSCFEVGSGVGLVGICLAHV--KASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASES 99 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~--g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~ 99 (191)
++.+|||+|||+|..++.++.. +..+|+++|+++.+++.+++|++.++.. ++.+...|..+....
T Consensus 83 ~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~-------------~v~~~~~D~~~~~~~ 149 (274)
T 3ajd_A 83 EDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVL-------------NTIIINADMRKYKDY 149 (274)
T ss_dssp TTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCC-------------SEEEEESCHHHHHHH
T ss_pred CcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCC-------------cEEEEeCChHhcchh
Confidence 6779999999999999877763 3359999999999999999999988753 356666554322110
Q ss_pred C-CCCCCCCEEEEcccccCC-------------------CChHHHHHHHHHHhccCCC
Q 038343 100 G-LSAFVPEIILGADILYDR-------------------SCFPDLVRILAILLNRRKS 137 (191)
Q Consensus 100 ~-~~~~~fDvIi~~d~ly~~-------------------~~~~~ll~~l~~ll~~~g~ 137 (191)
. ...++||+|++. .-|.. .....+++.+.++|+|||.
T Consensus 150 ~~~~~~~fD~Vl~d-~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~ 206 (274)
T 3ajd_A 150 LLKNEIFFDKILLD-APCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGE 206 (274)
T ss_dssp HHHTTCCEEEEEEE-ECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEE
T ss_pred hhhccccCCEEEEc-CCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCE
Confidence 0 013579999974 22211 3557899999999999974
|
| >1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 | Back alignment and structure |
|---|
Probab=99.27 E-value=1e-11 Score=103.04 Aligned_cols=110 Identities=14% Similarity=0.061 Sum_probs=78.2
Q ss_pred CCCCCCcEEEeCCCccHHHHHHHhc-CCCeEEEEcCChHHHHHH-------HHHHHHhcCCCCcccccccCCCCeeEEEe
Q 038343 19 EIFSNKSCFEVGSGVGLVGICLAHV-KASKVTLTDGDHLTLANM-------RSNLELNQLSTDTSLLESYEDPNVVQCVH 90 (191)
Q Consensus 19 ~~~~~~~VLElG~GtG~~~~~la~~-g~~~v~~tD~~~~~l~~~-------~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ 90 (191)
...++.+|||||||+|..++.+++. +..+|+++|+++.+++.+ ++|+..+++.. .++.+..
T Consensus 239 ~l~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~-----------~nV~~i~ 307 (433)
T 1u2z_A 239 QLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRL-----------NNVEFSL 307 (433)
T ss_dssp TCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCC-----------CCEEEEE
T ss_pred CCCCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCC-----------CceEEEE
Confidence 3447789999999999999988874 656899999999998888 88877766321 2466655
Q ss_pred e-cCCCCCcCCCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCcc
Q 038343 91 L-PWESASESGLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVSS 140 (191)
Q Consensus 91 l-dw~~~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~~ 140 (191)
. ++...........+||+|+++.+++. .+....++.+.+.|+|||...+
T Consensus 308 gD~~~~~~~~~~~~~~FDvIvvn~~l~~-~d~~~~L~el~r~LKpGG~lVi 357 (433)
T 1u2z_A 308 KKSFVDNNRVAELIPQCDVILVNNFLFD-EDLNKKVEKILQTAKVGCKIIS 357 (433)
T ss_dssp SSCSTTCHHHHHHGGGCSEEEECCTTCC-HHHHHHHHHHHTTCCTTCEEEE
T ss_pred cCccccccccccccCCCCEEEEeCcccc-ccHHHHHHHHHHhCCCCeEEEE
Confidence 4 23221000001257999999877753 5677788999999999986443
|
| >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E | Back alignment and structure |
|---|
Probab=99.26 E-value=7e-11 Score=90.95 Aligned_cols=111 Identities=8% Similarity=-0.065 Sum_probs=76.0
Q ss_pred CCCcEEEeCCCccHHHHHHHhcCCC-eEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCC
Q 038343 22 SNKSCFEVGSGVGLVGICLAHVKAS-KVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESG 100 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~g~~-~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~ 100 (191)
++.+|||+|||+|..++.+++.++. +|+++|+++.+++.+++|++.+...... .....++.+...|..+.....
T Consensus 49 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~-----~~~~~nv~~~~~D~~~~l~~~ 123 (246)
T 2vdv_E 49 KKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTAS-----KHGFQNINVLRGNAMKFLPNF 123 (246)
T ss_dssp CCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-C-----CSTTTTEEEEECCTTSCGGGT
T ss_pred CCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhcccc-----ccCCCcEEEEeccHHHHHHHh
Confidence 4668999999999999988887653 8999999999999999998876211000 000024777777776533323
Q ss_pred CCCCCCCEEEEcc--cccCC------CChHHHHHHHHHHhccCCC
Q 038343 101 LSAFVPEIILGAD--ILYDR------SCFPDLVRILAILLNRRKS 137 (191)
Q Consensus 101 ~~~~~fDvIi~~d--~ly~~------~~~~~ll~~l~~ll~~~g~ 137 (191)
+..+.+|.|+... ..+.. .....+++.+.++|+|||.
T Consensus 124 ~~~~~~d~v~~~~p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~ 168 (246)
T 2vdv_E 124 FEKGQLSKMFFCFPDPHFKQRKHKARIITNTLLSEYAYVLKEGGV 168 (246)
T ss_dssp SCTTCEEEEEEESCCCC------CSSCCCHHHHHHHHHHEEEEEE
T ss_pred ccccccCEEEEECCCcccccchhHHhhccHHHHHHHHHHcCCCCE
Confidence 4556899988532 11100 0115899999999999974
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=4.7e-11 Score=96.83 Aligned_cols=102 Identities=12% Similarity=0.076 Sum_probs=82.8
Q ss_pred CCCCcEEEeCCCccHHHHHHHhcC-CCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcC
Q 038343 21 FSNKSCFEVGSGVGLVGICLAHVK-ASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASES 99 (191)
Q Consensus 21 ~~~~~VLElG~GtG~~~~~la~~g-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~ 99 (191)
.++.+|||+|||+|..+..+++.. ..+++++|+ +.+++.++++++.++.. .++.+...|+.+..
T Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~------------~~v~~~~~d~~~~~-- 253 (359)
T 1x19_A 189 DGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVA------------DRMRGIAVDIYKES-- 253 (359)
T ss_dssp TTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCT------------TTEEEEECCTTTSC--
T ss_pred CCCCEEEEECCcccHHHHHHHHHCCCCeEEEEec-HHHHHHHHHHHHhcCCC------------CCEEEEeCccccCC--
Confidence 456799999999999998777753 238999999 99999999999887654 45888888876542
Q ss_pred CCCCCCCCEEEEcccccCCCC--hHHHHHHHHHHhccCCCCcc
Q 038343 100 GLSAFVPEIILGADILYDRSC--FPDLVRILAILLNRRKSVSS 140 (191)
Q Consensus 100 ~~~~~~fDvIi~~d~ly~~~~--~~~ll~~l~~ll~~~g~~~~ 140 (191)
+ ..+|+|++..++++..+ ...+++.+.++|+|+|....
T Consensus 254 -~--~~~D~v~~~~vlh~~~d~~~~~~l~~~~~~L~pgG~l~i 293 (359)
T 1x19_A 254 -Y--PEADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLI 293 (359)
T ss_dssp -C--CCCSEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEE
T ss_pred -C--CCCCEEEEechhccCCHHHHHHHHHHHHHhcCCCCEEEE
Confidence 2 23599999999998776 78899999999999986543
|
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=1.5e-12 Score=107.53 Aligned_cols=109 Identities=13% Similarity=0.064 Sum_probs=79.5
Q ss_pred HHHHHhhCCCCCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEE
Q 038343 10 LSEFILSFPEIFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCV 89 (191)
Q Consensus 10 L~~~l~~~~~~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~ 89 (191)
+++.+.......++.+|||+|||+|.....+++.|. +|+++|+++.+++.++++ +.. ..
T Consensus 95 ~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~g~-~v~gvD~s~~~~~~a~~~----~~~----------------~~ 153 (416)
T 4e2x_A 95 LARDFLATELTGPDPFIVEIGCNDGIMLRTIQEAGV-RHLGFEPSSGVAAKAREK----GIR----------------VR 153 (416)
T ss_dssp HHHHHHHTTTCSSSCEEEEETCTTTTTHHHHHHTTC-EEEEECCCHHHHHHHHTT----TCC----------------EE
T ss_pred HHHHHHHHhCCCCCCEEEEecCCCCHHHHHHHHcCC-cEEEECCCHHHHHHHHHc----CCC----------------cc
Confidence 444444444445678999999999999998888877 999999999999888754 211 01
Q ss_pred eecCCCCCcC--CCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCc
Q 038343 90 HLPWESASES--GLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVS 139 (191)
Q Consensus 90 ~ldw~~~~~~--~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~ 139 (191)
...+...... .+.+++||+|++..++++..+...+++.+.++|+|+|...
T Consensus 154 ~~~~~~~~~~~l~~~~~~fD~I~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~ 205 (416)
T 4e2x_A 154 TDFFEKATADDVRRTEGPANVIYAANTLCHIPYVQSVLEGVDALLAPDGVFV 205 (416)
T ss_dssp CSCCSHHHHHHHHHHHCCEEEEEEESCGGGCTTHHHHHHHHHHHEEEEEEEE
T ss_pred eeeechhhHhhcccCCCCEEEEEECChHHhcCCHHHHHHHHHHHcCCCeEEE
Confidence 1111000000 0224689999999999999999999999999999997654
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E* | Back alignment and structure |
|---|
Probab=99.25 E-value=5.4e-11 Score=91.07 Aligned_cols=121 Identities=9% Similarity=-0.069 Sum_probs=76.9
Q ss_pred HHHHHHhhCC---CCCCCCcEEEeCCCccHHHHHHHhc-C-CCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCC
Q 038343 9 LLSEFILSFP---EIFSNKSCFEVGSGVGLVGICLAHV-K-ASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDP 83 (191)
Q Consensus 9 ~L~~~l~~~~---~~~~~~~VLElG~GtG~~~~~la~~-g-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~ 83 (191)
.++..+.... ...++.+|||+|||+|..+..++.. + ..+|+++|+++.+++.+.+..+..
T Consensus 60 kla~~ll~~l~~~~l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r--------------- 124 (232)
T 3id6_C 60 KLAGAILKGLKTNPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRR--------------- 124 (232)
T ss_dssp HHHHHHHTTCSCCSCCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHC---------------
T ss_pred HHHHHHHhhhhhcCCCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc---------------
Confidence 3445554432 2457889999999999988877764 3 348999999999986665444332
Q ss_pred CeeEEEeecCCCCCcCCCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCccccccCC
Q 038343 84 NVVQCVHLPWESASESGLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVSSSRKESS 146 (191)
Q Consensus 84 ~~i~~~~ldw~~~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~~~~~~~~ 146 (191)
.++.+...|............+||+|++. +-. +.....+...++++|||||.......++|
T Consensus 125 ~nv~~i~~Da~~~~~~~~~~~~~D~I~~d-~a~-~~~~~il~~~~~~~LkpGG~lvisik~~~ 185 (232)
T 3id6_C 125 PNIFPLLADARFPQSYKSVVENVDVLYVD-IAQ-PDQTDIAIYNAKFFLKVNGDMLLVIKARS 185 (232)
T ss_dssp TTEEEEECCTTCGGGTTTTCCCEEEEEEC-CCC-TTHHHHHHHHHHHHEEEEEEEEEEEC---
T ss_pred CCeEEEEcccccchhhhccccceEEEEec-CCC-hhHHHHHHHHHHHhCCCCeEEEEEEccCC
Confidence 13566666654332111123579999974 322 33344456677779999998776655555
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.25 E-value=2e-11 Score=97.83 Aligned_cols=103 Identities=14% Similarity=0.143 Sum_probs=82.0
Q ss_pred CCCCcEEEeCCCccHHHHHHHhcC-CCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcC
Q 038343 21 FSNKSCFEVGSGVGLVGICLAHVK-ASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASES 99 (191)
Q Consensus 21 ~~~~~VLElG~GtG~~~~~la~~g-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~ 99 (191)
.++.+|||+|||+|..+..+++.. ..+++++|++ .+++.+++++..++.. .++.+...|+.+..
T Consensus 164 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~~~~~~~~------------~~v~~~~~d~~~~~-- 228 (335)
T 2r3s_A 164 IEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWA-SVLEVAKENARIQGVA------------SRYHTIAGSAFEVD-- 228 (335)
T ss_dssp CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECH-HHHHHHHHHHHHHTCG------------GGEEEEESCTTTSC--
T ss_pred CCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecH-HHHHHHHHHHHhcCCC------------cceEEEecccccCC--
Confidence 356799999999999988777652 2489999998 9999999998877654 35888888876532
Q ss_pred CCCCCCCCEEEEcccccCCC--ChHHHHHHHHHHhccCCCCcc
Q 038343 100 GLSAFVPEIILGADILYDRS--CFPDLVRILAILLNRRKSVSS 140 (191)
Q Consensus 100 ~~~~~~fDvIi~~d~ly~~~--~~~~ll~~l~~ll~~~g~~~~ 140 (191)
++ ..||+|++..++++.. ....+++.+.++|+|+|....
T Consensus 229 -~~-~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i 269 (335)
T 2r3s_A 229 -YG-NDYDLVLLPNFLHHFDVATCEQLLRKIKTALAVEGKVIV 269 (335)
T ss_dssp -CC-SCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred -CC-CCCcEEEEcchhccCCHHHHHHHHHHHHHhCCCCcEEEE
Confidence 22 2499999999999874 457999999999999975443
|
| >4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.25 E-value=8.6e-12 Score=102.54 Aligned_cols=99 Identities=20% Similarity=0.031 Sum_probs=72.8
Q ss_pred CCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCCC
Q 038343 22 SNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESGL 101 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~~ 101 (191)
++.+|||+|||+|..++.+++.|+. |+++|+++.+++.+++|++.|+.. . .+...|..+... ..
T Consensus 214 ~g~~VLDlg~GtG~~sl~~a~~ga~-V~avDis~~al~~a~~n~~~ng~~------------~--~~~~~D~~~~l~-~~ 277 (393)
T 4dmg_A 214 PGERVLDVYSYVGGFALRAARKGAY-ALAVDKDLEALGVLDQAALRLGLR------------V--DIRHGEALPTLR-GL 277 (393)
T ss_dssp TTCEEEEESCTTTHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHHHTCC------------C--EEEESCHHHHHH-TC
T ss_pred CCCeEEEcccchhHHHHHHHHcCCe-EEEEECCHHHHHHHHHHHHHhCCC------------C--cEEEccHHHHHH-Hh
Confidence 4889999999999999999999885 999999999999999999999865 1 233433322111 11
Q ss_pred CCCCCCEEEEcccccCC---------CChHHHHHHHHHHhccCCC
Q 038343 102 SAFVPEIILGADILYDR---------SCFPDLVRILAILLNRRKS 137 (191)
Q Consensus 102 ~~~~fDvIi~~d~ly~~---------~~~~~ll~~l~~ll~~~g~ 137 (191)
. +.||+|++....+.. .....+++.+.++|+|||.
T Consensus 278 ~-~~fD~Ii~dpP~f~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~ 321 (393)
T 4dmg_A 278 E-GPFHHVLLDPPTLVKRPEELPAMKRHLVDLVREALRLLAEEGF 321 (393)
T ss_dssp C-CCEEEEEECCCCCCSSGGGHHHHHHHHHHHHHHHHHTEEEEEE
T ss_pred c-CCCCEEEECCCcCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCE
Confidence 2 349999985333221 2346788888999999974
|
| >3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=99.24 E-value=1.1e-11 Score=94.97 Aligned_cols=118 Identities=17% Similarity=0.133 Sum_probs=77.1
Q ss_pred cccHHHHHHHHhhCCCCCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCC
Q 038343 4 WPSSLLLSEFILSFPEIFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDP 83 (191)
Q Consensus 4 W~~a~~L~~~l~~~~~~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~ 83 (191)
-.++..|.+.+.......++++|||+|||||..+..+++.|+.+|+++|+++.|++.++++......
T Consensus 19 srg~~kL~~~L~~~~~~~~g~~VLDiGcGtG~~t~~la~~g~~~V~gvDis~~ml~~a~~~~~~~~~------------- 85 (232)
T 3opn_A 19 SRGGLKLEKALKEFHLEINGKTCLDIGSSTGGFTDVMLQNGAKLVYALDVGTNQLAWKIRSDERVVV------------- 85 (232)
T ss_dssp STTHHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSCCCCCHHHHTCTTEEE-------------
T ss_pred CCcHHHHHHHHHHcCCCCCCCEEEEEccCCCHHHHHHHhcCCCEEEEEcCCHHHHHHHHHhCccccc-------------
Confidence 3567778887777665567889999999999999988888877999999999999876654221110
Q ss_pred CeeEEEeecCCCCCcCCCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCccc
Q 038343 84 NVVQCVHLPWESASESGLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVSSS 141 (191)
Q Consensus 84 ~~i~~~~ldw~~~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~~~ 141 (191)
....+........+....||.+.+ |+++.. ...+++.+.++|+|+|....+
T Consensus 86 ----~~~~~~~~~~~~~~~~~~~d~~~~-D~v~~~--l~~~l~~i~rvLkpgG~lv~~ 136 (232)
T 3opn_A 86 ----MEQFNFRNAVLADFEQGRPSFTSI-DVSFIS--LDLILPPLYEILEKNGEVAAL 136 (232)
T ss_dssp ----ECSCCGGGCCGGGCCSCCCSEEEE-CCSSSC--GGGTHHHHHHHSCTTCEEEEE
T ss_pred ----cccceEEEeCHhHcCcCCCCEEEE-EEEhhh--HHHHHHHHHHhccCCCEEEEE
Confidence 000011000001111123555443 444322 488999999999999876654
|
| >3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=99.24 E-value=6.7e-12 Score=103.27 Aligned_cols=104 Identities=19% Similarity=0.091 Sum_probs=79.6
Q ss_pred CCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcC-CCCcccccccCCCCeeEEEeecCCCCCcCC
Q 038343 22 SNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQL-STDTSLLESYEDPNVVQCVHLPWESASESG 100 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~-~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~ 100 (191)
++.+|||+|||+|..++.+++.|+.+|+++|+++.+++.+++|++.|++ . .++.+...|..+.....
T Consensus 220 ~~~~VLDl~cG~G~~sl~la~~g~~~V~~vD~s~~al~~a~~n~~~ngl~~------------~~v~~~~~D~~~~~~~~ 287 (396)
T 3c0k_A 220 ENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDL------------SKAEFVRDDVFKLLRTY 287 (396)
T ss_dssp TTCEEEEESCTTCSHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCG------------GGEEEEESCHHHHHHHH
T ss_pred CCCeEEEeeccCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCc------------cceEEEECCHHHHHHHH
Confidence 6779999999999999999998877999999999999999999999986 3 24667776654321100
Q ss_pred -CCCCCCCEEEEcccccCC---------CChHHHHHHHHHHhccCCC
Q 038343 101 -LSAFVPEIILGADILYDR---------SCFPDLVRILAILLNRRKS 137 (191)
Q Consensus 101 -~~~~~fDvIi~~d~ly~~---------~~~~~ll~~l~~ll~~~g~ 137 (191)
....+||+|++....+.. .....++..+.++|+|+|.
T Consensus 288 ~~~~~~fD~Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~ 334 (396)
T 3c0k_A 288 RDRGEKFDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGI 334 (396)
T ss_dssp HHTTCCEEEEEECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEEE
T ss_pred HhcCCCCCEEEECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCcE
Confidence 013579999985443322 4567888899999999963
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=99.24 E-value=5.6e-11 Score=94.97 Aligned_cols=100 Identities=16% Similarity=0.016 Sum_probs=73.1
Q ss_pred CCCcEEEeCCCccHHHHHHHhc-C-CCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcC
Q 038343 22 SNKSCFEVGSGVGLVGICLAHV-K-ASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASES 99 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~-g-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~ 99 (191)
++.+|||+|||+|..++.++.. + ..+|+++|+++.+++.+++|++.++.. ++.+...|..+...
T Consensus 118 ~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~-------------~v~~~~~D~~~~~~- 183 (315)
T 1ixk_A 118 PGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVL-------------NVILFHSSSLHIGE- 183 (315)
T ss_dssp TTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCC-------------SEEEESSCGGGGGG-
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCC-------------eEEEEECChhhccc-
Confidence 6779999999999999877764 2 248999999999999999999988753 36666666543321
Q ss_pred CCCCCCCCEEEEcc------cccCCCC----------------hHHHHHHHHHHhccCCC
Q 038343 100 GLSAFVPEIILGAD------ILYDRSC----------------FPDLVRILAILLNRRKS 137 (191)
Q Consensus 100 ~~~~~~fDvIi~~d------~ly~~~~----------------~~~ll~~l~~ll~~~g~ 137 (191)
..++||+|++.- ++...++ ...+++.+.++|+|||.
T Consensus 184 --~~~~fD~Il~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~ 241 (315)
T 1ixk_A 184 --LNVEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGI 241 (315)
T ss_dssp --GCCCEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEE
T ss_pred --ccccCCEEEEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCE
Confidence 235799999721 2221111 15889999999999973
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.24 E-value=5.2e-11 Score=96.81 Aligned_cols=104 Identities=13% Similarity=0.014 Sum_probs=80.8
Q ss_pred CCCcEEEeCCCccHHHHHHHhcC-CCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCC
Q 038343 22 SNKSCFEVGSGVGLVGICLAHVK-ASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESG 100 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~g-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~ 100 (191)
...+|||+|||+|..+..+++.. ..+++++|. +.+++.+++++...+.. .++.+...|..+... .
T Consensus 179 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~------------~~v~~~~~d~~~~~~-~ 244 (363)
T 3dp7_A 179 HPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDL-PQQLEMMRKQTAGLSGS------------ERIHGHGANLLDRDV-P 244 (363)
T ss_dssp CCSEEEEESCTTCHHHHHHHHHSTTCEEEEEEC-HHHHHHHHHHHTTCTTG------------GGEEEEECCCCSSSC-C
T ss_pred CCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeC-HHHHHHHHHHHHhcCcc------------cceEEEEccccccCC-C
Confidence 45699999999999998777643 338999999 99999999988766543 468888888765310 1
Q ss_pred CCCCCCCEEEEcccccCCCCh--HHHHHHHHHHhccCCCCcc
Q 038343 101 LSAFVPEIILGADILYDRSCF--PDLVRILAILLNRRKSVSS 140 (191)
Q Consensus 101 ~~~~~fDvIi~~d~ly~~~~~--~~ll~~l~~ll~~~g~~~~ 140 (191)
++ .+||+|++..++++..+. ..+++.+++.|+|||....
T Consensus 245 ~p-~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i 285 (363)
T 3dp7_A 245 FP-TGFDAVWMSQFLDCFSEEEVISILTRVAQSIGKDSKVYI 285 (363)
T ss_dssp CC-CCCSEEEEESCSTTSCHHHHHHHHHHHHHHCCTTCEEEE
T ss_pred CC-CCcCEEEEechhhhCCHHHHHHHHHHHHHhcCCCcEEEE
Confidence 22 579999999999876544 5789999999999986543
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=1.7e-11 Score=93.66 Aligned_cols=109 Identities=13% Similarity=0.077 Sum_probs=78.9
Q ss_pred HHHHHhhCCCCCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEE
Q 038343 10 LSEFILSFPEIFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCV 89 (191)
Q Consensus 10 L~~~l~~~~~~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~ 89 (191)
+...+.+.....++.+|||+|||+|..+..+++.+..+|+++|+++.+++.+++++..++.. ++.+.
T Consensus 79 ~~~~~~~~l~~~~~~~vLdiG~G~G~~~~~la~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-------------~v~~~ 145 (235)
T 1jg1_A 79 MVAIMLEIANLKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGVK-------------NVHVI 145 (235)
T ss_dssp HHHHHHHHHTCCTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTCC-------------SEEEE
T ss_pred HHHHHHHhcCCCCCCEEEEEeCCcCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCC-------------CcEEE
Confidence 33344333344567899999999999999888764258999999999999999999887653 36666
Q ss_pred eecCCCCCcCCCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCcc
Q 038343 90 HLPWESASESGLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVSS 140 (191)
Q Consensus 90 ~ldw~~~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~~ 140 (191)
..|...... ...+||+|++..++.+.. +.+.++|+|+|....
T Consensus 146 ~~d~~~~~~---~~~~fD~Ii~~~~~~~~~------~~~~~~L~pgG~lvi 187 (235)
T 1jg1_A 146 LGDGSKGFP---PKAPYDVIIVTAGAPKIP------EPLIEQLKIGGKLII 187 (235)
T ss_dssp ESCGGGCCG---GGCCEEEEEECSBBSSCC------HHHHHTEEEEEEEEE
T ss_pred ECCcccCCC---CCCCccEEEECCcHHHHH------HHHHHhcCCCcEEEE
Confidence 666522211 123599999988876543 478889999986544
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.24 E-value=2.5e-12 Score=98.59 Aligned_cols=104 Identities=16% Similarity=0.154 Sum_probs=76.6
Q ss_pred CCCCcEEEeCCCccHHHHHHHhcC--CCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCc
Q 038343 21 FSNKSCFEVGSGVGLVGICLAHVK--ASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASE 98 (191)
Q Consensus 21 ~~~~~VLElG~GtG~~~~~la~~g--~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~ 98 (191)
.++.+|||+|||+|..+..+++.. ..+|+++|+++.+++.+++++..++.. .++.+...|..+...
T Consensus 59 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~------------~~v~~~~~d~~~~~~ 126 (239)
T 2hnk_A 59 SGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLE------------NKIFLKLGSALETLQ 126 (239)
T ss_dssp HTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCG------------GGEEEEESCHHHHHH
T ss_pred hCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC------------CCEEEEECCHHHHHH
Confidence 357799999999999999887762 349999999999999999999887754 246666555422100
Q ss_pred ------------CCCCC--CCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCc
Q 038343 99 ------------SGLSA--FVPEIILGADILYDRSCFPDLVRILAILLNRRKSVS 139 (191)
Q Consensus 99 ------------~~~~~--~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~ 139 (191)
..+.. ++||+|++.. .......+++.+.++|+|||...
T Consensus 127 ~~~~~~~~~~~~~~f~~~~~~fD~I~~~~---~~~~~~~~l~~~~~~L~pgG~lv 178 (239)
T 2hnk_A 127 VLIDSKSAPSWASDFAFGPSSIDLFFLDA---DKENYPNYYPLILKLLKPGGLLI 178 (239)
T ss_dssp HHHHCSSCCGGGTTTCCSTTCEEEEEECS---CGGGHHHHHHHHHHHEEEEEEEE
T ss_pred HHHhhcccccccccccCCCCCcCEEEEeC---CHHHHHHHHHHHHHHcCCCeEEE
Confidence 01222 6799999853 34566789999999999997533
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
Probab=99.24 E-value=6.8e-12 Score=94.22 Aligned_cols=99 Identities=18% Similarity=0.141 Sum_probs=76.3
Q ss_pred CCCcEEEeCCCccHHHHHHHhcC--CCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcC
Q 038343 22 SNKSCFEVGSGVGLVGICLAHVK--ASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASES 99 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~g--~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~ 99 (191)
++.+|||+|||+|..++.+++.. ..+|+++|+++.+++.++++++.++.. .++.+...|..+...
T Consensus 56 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~------------~~v~~~~~d~~~~~~- 122 (210)
T 3c3p_A 56 QPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLI------------DRVELQVGDPLGIAA- 122 (210)
T ss_dssp CCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGG------------GGEEEEESCHHHHHT-
T ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCC------------ceEEEEEecHHHHhc-
Confidence 56799999999999999888752 249999999999999999999887653 356777766543211
Q ss_pred CCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCC
Q 038343 100 GLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSV 138 (191)
Q Consensus 100 ~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~ 138 (191)
. ..+ ||+|++. ........+++.+.++|+|||..
T Consensus 123 ~-~~~-fD~v~~~---~~~~~~~~~l~~~~~~LkpgG~l 156 (210)
T 3c3p_A 123 G-QRD-IDILFMD---CDVFNGADVLERMNRCLAKNALL 156 (210)
T ss_dssp T-CCS-EEEEEEE---TTTSCHHHHHHHHGGGEEEEEEE
T ss_pred c-CCC-CCEEEEc---CChhhhHHHHHHHHHhcCCCeEE
Confidence 1 124 9999975 33567889999999999999753
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=5.4e-11 Score=97.61 Aligned_cols=110 Identities=10% Similarity=0.030 Sum_probs=79.7
Q ss_pred CCCCCCcEEEeCCCccHHHHHHHh-cCCCeEEEEcCChHHHHHHHHHHH-------HhcCCCCcccccccCCCCeeEEEe
Q 038343 19 EIFSNKSCFEVGSGVGLVGICLAH-VKASKVTLTDGDHLTLANMRSNLE-------LNQLSTDTSLLESYEDPNVVQCVH 90 (191)
Q Consensus 19 ~~~~~~~VLElG~GtG~~~~~la~-~g~~~v~~tD~~~~~l~~~~~n~~-------~n~~~~~~~~~~~~~~~~~i~~~~ 90 (191)
...++.+|||||||+|.+.+.++. .++.+|+++|+++.+++.++++++ .+++. ..++.+..
T Consensus 170 ~l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~-----------~~rVefi~ 238 (438)
T 3uwp_A 170 KMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKK-----------HAEYTLER 238 (438)
T ss_dssp CCCTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBC-----------CCEEEEEE
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCC-----------CCCeEEEE
Confidence 344778999999999999987775 566579999999999999988763 23321 13688888
Q ss_pred ecCCCCCcCCCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCccc
Q 038343 91 LPWESASESGLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVSSS 141 (191)
Q Consensus 91 ldw~~~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~~~ 141 (191)
.|..+..... .-..||+|+++.+++ .++....+..+.+.|+|||...++
T Consensus 239 GD~~~lp~~d-~~~~aDVVf~Nn~~F-~pdl~~aL~Ei~RvLKPGGrIVss 287 (438)
T 3uwp_A 239 GDFLSEEWRE-RIANTSVIFVNNFAF-GPEVDHQLKERFANMKEGGRIVSS 287 (438)
T ss_dssp CCTTSHHHHH-HHHTCSEEEECCTTC-CHHHHHHHHHHHTTSCTTCEEEES
T ss_pred CcccCCcccc-ccCCccEEEEccccc-CchHHHHHHHHHHcCCCCcEEEEe
Confidence 8876542100 003699999876654 456677778888999999876543
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.24 E-value=3.9e-11 Score=96.21 Aligned_cols=99 Identities=18% Similarity=0.122 Sum_probs=79.9
Q ss_pred CcEEEeCCCccHHHHHHHhcC-CCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCCCC
Q 038343 24 KSCFEVGSGVGLVGICLAHVK-ASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESGLS 102 (191)
Q Consensus 24 ~~VLElG~GtG~~~~~la~~g-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~~~ 102 (191)
.+|||+|||+|..+..+++.. ..+++++|+ +.+++.+++++...+.. .++.+...|+.+. ++
T Consensus 169 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~------------~~v~~~~~d~~~~----~~ 231 (334)
T 2ip2_A 169 RSFVDVGGGSGELTKAILQAEPSARGVMLDR-EGSLGVARDNLSSLLAG------------ERVSLVGGDMLQE----VP 231 (334)
T ss_dssp CEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-TTCTHHHHHHTHHHHHT------------TSEEEEESCTTTC----CC
T ss_pred CEEEEeCCCchHHHHHHHHHCCCCEEEEeCc-HHHHHHHHHHHhhcCCC------------CcEEEecCCCCCC----CC
Confidence 799999999999888777653 348999999 99999999988776543 4588888887653 22
Q ss_pred CCCCCEEEEcccccCCCChH--HHHHHHHHHhccCCCCcc
Q 038343 103 AFVPEIILGADILYDRSCFP--DLVRILAILLNRRKSVSS 140 (191)
Q Consensus 103 ~~~fDvIi~~d~ly~~~~~~--~ll~~l~~ll~~~g~~~~ 140 (191)
.+||+|++..++++..+.. .+++.+.+.|+|+|....
T Consensus 232 -~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i 270 (334)
T 2ip2_A 232 -SNGDIYLLSRIIGDLDEAASLRLLGNCREAMAGDGRVVV 270 (334)
T ss_dssp -SSCSEEEEESCGGGCCHHHHHHHHHHHHHHSCTTCEEEE
T ss_pred -CCCCEEEEchhccCCCHHHHHHHHHHHHHhcCCCCEEEE
Confidence 4799999999998766554 999999999999976543
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=99.23 E-value=6e-12 Score=95.56 Aligned_cols=102 Identities=13% Similarity=0.047 Sum_probs=76.2
Q ss_pred CCCCcEEEeCCCccHHHHHHHhc-C-CCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCc
Q 038343 21 FSNKSCFEVGSGVGLVGICLAHV-K-ASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASE 98 (191)
Q Consensus 21 ~~~~~VLElG~GtG~~~~~la~~-g-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~ 98 (191)
.++.+|||+|||+|..++.+++. + ..+|+++|+++.+++.++++++.++.. .++.+...|..+...
T Consensus 68 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~------------~~i~~~~~d~~~~~~ 135 (229)
T 2avd_A 68 IQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAE------------HKIDLRLKPALETLD 135 (229)
T ss_dssp TTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCT------------TTEEEEESCHHHHHH
T ss_pred cCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCC------------CeEEEEEcCHHHHHH
Confidence 35679999999999999988875 2 349999999999999999999888753 356666665432211
Q ss_pred CCC-C--CCCCCEEEEcccccCCCChHHHHHHHHHHhccCCC
Q 038343 99 SGL-S--AFVPEIILGADILYDRSCFPDLVRILAILLNRRKS 137 (191)
Q Consensus 99 ~~~-~--~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~ 137 (191)
... . .++||+|++... ......+++.+.++|+|||.
T Consensus 136 ~~~~~~~~~~~D~v~~d~~---~~~~~~~l~~~~~~L~pgG~ 174 (229)
T 2avd_A 136 ELLAAGEAGTFDVAVVDAD---KENCSAYYERCLQLLRPGGI 174 (229)
T ss_dssp HHHHTTCTTCEEEEEECSC---STTHHHHHHHHHHHEEEEEE
T ss_pred HHHhcCCCCCccEEEECCC---HHHHHHHHHHHHHHcCCCeE
Confidence 000 0 157999998432 45678899999999999974
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=3.8e-11 Score=97.26 Aligned_cols=102 Identities=18% Similarity=0.128 Sum_probs=81.7
Q ss_pred CCCCcEEEeCCCccHHHHHHHhcCC-CeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcC
Q 038343 21 FSNKSCFEVGSGVGLVGICLAHVKA-SKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASES 99 (191)
Q Consensus 21 ~~~~~VLElG~GtG~~~~~la~~g~-~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~ 99 (191)
.++.+|||+|||+|..+..+++.+. .+++++|+ +.+++.+++++..++.. .++.+...|+.+..
T Consensus 182 ~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~------------~~v~~~~~d~~~~~-- 246 (360)
T 1tw3_A 182 TNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLS------------DRVDVVEGDFFEPL-- 246 (360)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCT------------TTEEEEECCTTSCC--
T ss_pred ccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecC-HHHHHHHHHHHHhcCCC------------CceEEEeCCCCCCC--
Confidence 3567999999999999987777643 38999999 99999999999887653 36888888876432
Q ss_pred CCCCCCCCEEEEcccccCCCCh--HHHHHHHHHHhccCCCCcc
Q 038343 100 GLSAFVPEIILGADILYDRSCF--PDLVRILAILLNRRKSVSS 140 (191)
Q Consensus 100 ~~~~~~fDvIi~~d~ly~~~~~--~~ll~~l~~ll~~~g~~~~ 140 (191)
+ ..||+|++..++++..+. ..+++.+.++|+|+|....
T Consensus 247 --~-~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i 286 (360)
T 1tw3_A 247 --P-RKADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILI 286 (360)
T ss_dssp --S-SCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEE
T ss_pred --C-CCccEEEEcccccCCCHHHHHHHHHHHHHhcCCCcEEEE
Confidence 2 249999999999877655 4899999999999976543
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.23 E-value=3.8e-11 Score=90.69 Aligned_cols=91 Identities=12% Similarity=0.006 Sum_probs=72.8
Q ss_pred CCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCCC
Q 038343 22 SNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESGL 101 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~~ 101 (191)
++.+|||+|||+|..+..+++. +++|+++.+++.++++ + +.+...+..+.. +
T Consensus 47 ~~~~vLDiG~G~G~~~~~l~~~-----~~vD~s~~~~~~a~~~----~----------------~~~~~~d~~~~~---~ 98 (219)
T 1vlm_A 47 PEGRGVEIGVGTGRFAVPLKIK-----IGVEPSERMAEIARKR----G----------------VFVLKGTAENLP---L 98 (219)
T ss_dssp CSSCEEEETCTTSTTHHHHTCC-----EEEESCHHHHHHHHHT----T----------------CEEEECBTTBCC---S
T ss_pred CCCcEEEeCCCCCHHHHHHHHH-----hccCCCHHHHHHHHhc----C----------------CEEEEcccccCC---C
Confidence 3779999999999888876654 9999999999988765 2 344555554322 3
Q ss_pred CCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCcc
Q 038343 102 SAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVSS 140 (191)
Q Consensus 102 ~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~~ 140 (191)
..++||+|++..++++..+...+++.+.++|+|+|....
T Consensus 99 ~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i 137 (219)
T 1vlm_A 99 KDESFDFALMVTTICFVDDPERALKEAYRILKKGGYLIV 137 (219)
T ss_dssp CTTCEEEEEEESCGGGSSCHHHHHHHHHHHEEEEEEEEE
T ss_pred CCCCeeEEEEcchHhhccCHHHHHHHHHHHcCCCcEEEE
Confidence 446899999999999999999999999999999975443
|
| >3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=8.1e-11 Score=96.14 Aligned_cols=106 Identities=13% Similarity=0.093 Sum_probs=77.3
Q ss_pred HHHHHhhCCCCCCCCcEEEeCCCccHHHHHHHhcCCC-eEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEE
Q 038343 10 LSEFILSFPEIFSNKSCFEVGSGVGLVGICLAHVKAS-KVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQC 88 (191)
Q Consensus 10 L~~~l~~~~~~~~~~~VLElG~GtG~~~~~la~~g~~-~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~ 88 (191)
++..+.... ..++.+|||+|||+|.+++.++..+.. +|+++|+++.+++.+++|++.+++. .++.+
T Consensus 206 la~~l~~~~-~~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~gl~------------~~i~~ 272 (373)
T 3tm4_A 206 IANAMIELA-ELDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGVL------------DKIKF 272 (373)
T ss_dssp HHHHHHHHH-TCCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTTCG------------GGCEE
T ss_pred HHHHHHHhh-cCCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCC------------CceEE
Confidence 344333333 346789999999999999998888653 8999999999999999999998864 35777
Q ss_pred EeecCCCCCcCCCCCCCCCEEEEcccccCCC-----C----hHHHHHHHHHHh
Q 038343 89 VHLPWESASESGLSAFVPEIILGADILYDRS-----C----FPDLVRILAILL 132 (191)
Q Consensus 89 ~~ldw~~~~~~~~~~~~fDvIi~~d~ly~~~-----~----~~~ll~~l~~ll 132 (191)
...|..+.. ...++||+|+++.+ |... . ...+++.++++|
T Consensus 273 ~~~D~~~~~---~~~~~fD~Ii~npP-yg~r~~~~~~~~~ly~~~~~~l~r~l 321 (373)
T 3tm4_A 273 IQGDATQLS---QYVDSVDFAISNLP-YGLKIGKKSMIPDLYMKFFNELAKVL 321 (373)
T ss_dssp EECCGGGGG---GTCSCEEEEEEECC-CC------CCHHHHHHHHHHHHHHHE
T ss_pred EECChhhCC---cccCCcCEEEECCC-CCcccCcchhHHHHHHHHHHHHHHHc
Confidence 787765532 23468999999544 4321 2 256677777777
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.22 E-value=1.3e-10 Score=90.69 Aligned_cols=99 Identities=16% Similarity=0.119 Sum_probs=76.6
Q ss_pred CCCCCCcEEEeCCCccHHHHHHHhc-C-CCeEEEEcCChHHHHHHHHHHHHh-c-CCCCcccccccCCCCeeEEEeecCC
Q 038343 19 EIFSNKSCFEVGSGVGLVGICLAHV-K-ASKVTLTDGDHLTLANMRSNLELN-Q-LSTDTSLLESYEDPNVVQCVHLPWE 94 (191)
Q Consensus 19 ~~~~~~~VLElG~GtG~~~~~la~~-g-~~~v~~tD~~~~~l~~~~~n~~~n-~-~~~~~~~~~~~~~~~~i~~~~ldw~ 94 (191)
...++.+|||+|||+|..+..+++. + ..+|+++|+++.+++.+++|++.+ + .. .++.+...|..
T Consensus 96 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~------------~~v~~~~~d~~ 163 (280)
T 1i9g_A 96 DIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPP------------DNWRLVVSDLA 163 (280)
T ss_dssp TCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCC------------TTEEEECSCGG
T ss_pred CCCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCC------------CcEEEEECchH
Confidence 3457789999999999999988774 3 359999999999999999999877 4 22 24677777665
Q ss_pred CCCcCCCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCC
Q 038343 95 SASESGLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKS 137 (191)
Q Consensus 95 ~~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~ 137 (191)
+.. +.+++||+|++ +..+...+++.+.++|+|+|.
T Consensus 164 ~~~---~~~~~~D~v~~-----~~~~~~~~l~~~~~~L~pgG~ 198 (280)
T 1i9g_A 164 DSE---LPDGSVDRAVL-----DMLAPWEVLDAVSRLLVAGGV 198 (280)
T ss_dssp GCC---CCTTCEEEEEE-----ESSCGGGGHHHHHHHEEEEEE
T ss_pred hcC---CCCCceeEEEE-----CCcCHHHHHHHHHHhCCCCCE
Confidence 432 23467999998 234667899999999999974
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.21 E-value=1.2e-10 Score=86.70 Aligned_cols=88 Identities=14% Similarity=0.016 Sum_probs=63.9
Q ss_pred CCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCC
Q 038343 21 FSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESG 100 (191)
Q Consensus 21 ~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~ 100 (191)
.++.+|||+|||+|..++.+++.+..+|+++|+++.+++.+++|+. . +.+...|..+.
T Consensus 50 ~~~~~vlD~gcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~--~----------------~~~~~~d~~~~---- 107 (200)
T 1ne2_A 50 IGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCG--G----------------VNFMVADVSEI---- 107 (200)
T ss_dssp SBTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCT--T----------------SEEEECCGGGC----
T ss_pred CCCCEEEEEeCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHhcC--C----------------CEEEECcHHHC----
Confidence 3677999999999999998888877689999999999999998764 1 34556655432
Q ss_pred CCCCCCCEEEEcccccCCCC--hHHHHHHHHHHh
Q 038343 101 LSAFVPEIILGADILYDRSC--FPDLVRILAILL 132 (191)
Q Consensus 101 ~~~~~fDvIi~~d~ly~~~~--~~~ll~~l~~ll 132 (191)
+ ++||+|+++.++++... ...+++.+.+++
T Consensus 108 -~-~~~D~v~~~~p~~~~~~~~~~~~l~~~~~~~ 139 (200)
T 1ne2_A 108 -S-GKYDTWIMNPPFGSVVKHSDRAFIDKAFETS 139 (200)
T ss_dssp -C-CCEEEEEECCCC-------CHHHHHHHHHHE
T ss_pred -C-CCeeEEEECCCchhccCchhHHHHHHHHHhc
Confidence 1 57999999887776543 345666666665
|
| >2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=2.4e-11 Score=97.92 Aligned_cols=94 Identities=13% Similarity=0.165 Sum_probs=76.1
Q ss_pred CCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCCC
Q 038343 22 SNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESGL 101 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~~ 101 (191)
++.+|||+|||+|..++. ++ ++.+|+++|+++.+++.+++|++.|++. .++.+...|..+..
T Consensus 195 ~~~~VLDlg~G~G~~~l~-a~-~~~~V~~vD~s~~ai~~a~~n~~~n~l~------------~~v~~~~~D~~~~~---- 256 (336)
T 2yx1_A 195 LNDVVVDMFAGVGPFSIA-CK-NAKKIYAIDINPHAIELLKKNIKLNKLE------------HKIIPILSDVREVD---- 256 (336)
T ss_dssp TTCEEEETTCTTSHHHHH-TT-TSSEEEEEESCHHHHHHHHHHHHHTTCT------------TTEEEEESCGGGCC----
T ss_pred CCCEEEEccCccCHHHHh-cc-CCCEEEEEECCHHHHHHHHHHHHHcCCC------------CcEEEEECChHHhc----
Confidence 677999999999999999 87 6679999999999999999999999864 35777777765442
Q ss_pred CCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCc
Q 038343 102 SAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVS 139 (191)
Q Consensus 102 ~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~ 139 (191)
.+||+|++ |..+ ....+++.+.++|+|+|...
T Consensus 257 --~~fD~Vi~-dpP~---~~~~~l~~~~~~L~~gG~l~ 288 (336)
T 2yx1_A 257 --VKGNRVIM-NLPK---FAHKFIDKALDIVEEGGVIH 288 (336)
T ss_dssp --CCEEEEEE-CCTT---TGGGGHHHHHHHEEEEEEEE
T ss_pred --CCCcEEEE-CCcH---hHHHHHHHHHHHcCCCCEEE
Confidence 57999998 3333 24478899999999987433
|
| >2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 | Back alignment and structure |
|---|
Probab=99.21 E-value=7.3e-12 Score=103.02 Aligned_cols=104 Identities=13% Similarity=0.019 Sum_probs=78.9
Q ss_pred CCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCC-
Q 038343 22 SNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESG- 100 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~- 100 (191)
++.+|||+|||+|..++.+++.|+.+|+++|+++.+++.+++|++.|++. .++.+...|..+.....
T Consensus 217 ~~~~VLDl~~G~G~~~~~la~~g~~~v~~vD~s~~~l~~a~~n~~~n~~~------------~~v~~~~~d~~~~~~~~~ 284 (396)
T 2as0_A 217 PGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVE------------DRMKFIVGSAFEEMEKLQ 284 (396)
T ss_dssp TTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCG------------GGEEEEESCHHHHHHHHH
T ss_pred CCCeEEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCC------------ccceEEECCHHHHHHHHH
Confidence 67899999999999999999888779999999999999999999999864 24677776654321100
Q ss_pred CCCCCCCEEEEcccccCC---------CChHHHHHHHHHHhccCCC
Q 038343 101 LSAFVPEIILGADILYDR---------SCFPDLVRILAILLNRRKS 137 (191)
Q Consensus 101 ~~~~~fDvIi~~d~ly~~---------~~~~~ll~~l~~ll~~~g~ 137 (191)
....+||+|++....+.. .....++..+.++|+|+|.
T Consensus 285 ~~~~~fD~Vi~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~ 330 (396)
T 2as0_A 285 KKGEKFDIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGI 330 (396)
T ss_dssp HTTCCEEEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEE
T ss_pred hhCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcE
Confidence 013579999984433332 3356778888899999963
|
| >2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} | Back alignment and structure |
|---|
Probab=99.21 E-value=5.6e-11 Score=93.16 Aligned_cols=105 Identities=15% Similarity=0.080 Sum_probs=78.9
Q ss_pred CCcEEEeCCCc---cHHHHHHHhcC-CCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCc
Q 038343 23 NKSCFEVGSGV---GLVGICLAHVK-ASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASE 98 (191)
Q Consensus 23 ~~~VLElG~Gt---G~~~~~la~~g-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~ 98 (191)
..+|||||||+ |.+...+.+.. ..+|+++|.++.|++.+++++..+ .++.+...|..+...
T Consensus 78 ~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~~---------------~~v~~~~~D~~~~~~ 142 (274)
T 2qe6_A 78 ISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAKD---------------PNTAVFTADVRDPEY 142 (274)
T ss_dssp CCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTTC---------------TTEEEEECCTTCHHH
T ss_pred CCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCCC---------------CCeEEEEeeCCCchh
Confidence 46899999999 97776665542 249999999999999999877321 247777877754310
Q ss_pred --------CCCCCCCCCEEEEcccccCCCC--hHHHHHHHHHHhccCCCCcccc
Q 038343 99 --------SGLSAFVPEIILGADILYDRSC--FPDLVRILAILLNRRKSVSSSR 142 (191)
Q Consensus 99 --------~~~~~~~fDvIi~~d~ly~~~~--~~~ll~~l~~ll~~~g~~~~~~ 142 (191)
..+...+||+|++..++++..+ ...+++.+.+.|+|||......
T Consensus 143 ~~~~~~~~~~~d~~~~d~v~~~~vlh~~~d~~~~~~l~~~~~~L~pGG~l~i~~ 196 (274)
T 2qe6_A 143 ILNHPDVRRMIDFSRPAAIMLVGMLHYLSPDVVDRVVGAYRDALAPGSYLFMTS 196 (274)
T ss_dssp HHHSHHHHHHCCTTSCCEEEETTTGGGSCTTTHHHHHHHHHHHSCTTCEEEEEE
T ss_pred hhccchhhccCCCCCCEEEEEechhhhCCcHHHHHHHHHHHHhCCCCcEEEEEE
Confidence 1122247999999999998765 8999999999999998655443
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=1.2e-11 Score=108.58 Aligned_cols=104 Identities=16% Similarity=0.072 Sum_probs=80.0
Q ss_pred CCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCCC
Q 038343 22 SNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESGL 101 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~~ 101 (191)
++++|||+|||||..++.+++.|+.+|+++|+|+.+++.+++|++.|++.. .++.+...|..+... .
T Consensus 539 ~g~~VLDlg~GtG~~sl~aa~~ga~~V~aVD~s~~al~~a~~N~~~ngl~~-----------~~v~~i~~D~~~~l~--~ 605 (703)
T 3v97_A 539 KGKDFLNLFSYTGSATVHAGLGGARSTTTVDMSRTYLEWAERNLRLNGLTG-----------RAHRLIQADCLAWLR--E 605 (703)
T ss_dssp TTCEEEEESCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCS-----------TTEEEEESCHHHHHH--H
T ss_pred CCCcEEEeeechhHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCc-----------cceEEEecCHHHHHH--h
Confidence 678999999999999999999888889999999999999999999998641 246677766543211 1
Q ss_pred CCCCCCEEEEcccccC-----------CCChHHHHHHHHHHhccCCCC
Q 038343 102 SAFVPEIILGADILYD-----------RSCFPDLVRILAILLNRRKSV 138 (191)
Q Consensus 102 ~~~~fDvIi~~d~ly~-----------~~~~~~ll~~l~~ll~~~g~~ 138 (191)
...+||+|++....+. ......+++.+.++|+|+|..
T Consensus 606 ~~~~fD~Ii~DPP~f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L 653 (703)
T 3v97_A 606 ANEQFDLIFIDPPTFSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTI 653 (703)
T ss_dssp CCCCEEEEEECCCSBC-------CCBHHHHHHHHHHHHHHHEEEEEEE
T ss_pred cCCCccEEEECCccccCCccchhHHHHHHHHHHHHHHHHHhcCCCcEE
Confidence 2357999998543332 124567889999999999753
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.21 E-value=4.5e-11 Score=96.55 Aligned_cols=103 Identities=12% Similarity=0.070 Sum_probs=82.5
Q ss_pred CCcEEEeCCCccHHHHHHHhcC-CCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCCC
Q 038343 23 NKSCFEVGSGVGLVGICLAHVK-ASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESGL 101 (191)
Q Consensus 23 ~~~VLElG~GtG~~~~~la~~g-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~~ 101 (191)
+.+|||+|||+|..+..+++.. ..+++++|+ +.+++.+++++...+.. .++.+...|+.+... .
T Consensus 180 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~------------~~v~~~~~d~~~~~~--~ 244 (352)
T 3mcz_A 180 ARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDL-PTTRDAARKTIHAHDLG------------GRVEFFEKNLLDARN--F 244 (352)
T ss_dssp CCEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCG------------GGEEEEECCTTCGGG--G
T ss_pred CCEEEEeCCCcCHHHHHHHHhCCCCeEEEEEC-HHHHHHHHHHHHhcCCC------------CceEEEeCCcccCcc--c
Confidence 7799999999999998777653 348999999 88999999998877644 468888888765421 1
Q ss_pred CCCCCCEEEEcccccCCCCh--HHHHHHHHHHhccCCCCcc
Q 038343 102 SAFVPEIILGADILYDRSCF--PDLVRILAILLNRRKSVSS 140 (191)
Q Consensus 102 ~~~~fDvIi~~d~ly~~~~~--~~ll~~l~~ll~~~g~~~~ 140 (191)
....||+|++..++++..+. ..+++.+++.|+|||....
T Consensus 245 ~~~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i 285 (352)
T 3mcz_A 245 EGGAADVVMLNDCLHYFDAREAREVIGHAAGLVKPGGALLI 285 (352)
T ss_dssp TTCCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEE
T ss_pred CCCCccEEEEecccccCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence 23469999999999977654 8899999999999976543
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} | Back alignment and structure |
|---|
Probab=99.20 E-value=8.3e-12 Score=95.80 Aligned_cols=101 Identities=15% Similarity=0.001 Sum_probs=76.2
Q ss_pred CCCcEEEeCCCccHHHHHHHhc-C-CCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcC
Q 038343 22 SNKSCFEVGSGVGLVGICLAHV-K-ASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASES 99 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~-g-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~ 99 (191)
+.++|||+|||+|..++.+++. + ..+|+++|+++.+++.+++|++..+.. .++.+...|..+....
T Consensus 70 ~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~------------~~i~~~~gda~~~l~~ 137 (237)
T 3c3y_A 70 NAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVE------------HKINFIESDAMLALDN 137 (237)
T ss_dssp TCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCG------------GGEEEEESCHHHHHHH
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC------------CcEEEEEcCHHHHHHH
Confidence 5679999999999999987764 2 349999999999999999999887754 3577776665332110
Q ss_pred C----CCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCC
Q 038343 100 G----LSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKS 137 (191)
Q Consensus 100 ~----~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~ 137 (191)
. ...++||+|++. ........+++.+.++|+|||.
T Consensus 138 l~~~~~~~~~fD~I~~d---~~~~~~~~~l~~~~~~L~pGG~ 176 (237)
T 3c3y_A 138 LLQGQESEGSYDFGFVD---ADKPNYIKYHERLMKLVKVGGI 176 (237)
T ss_dssp HHHSTTCTTCEEEEEEC---SCGGGHHHHHHHHHHHEEEEEE
T ss_pred HHhccCCCCCcCEEEEC---CchHHHHHHHHHHHHhcCCCeE
Confidence 0 013589999973 2345678899999999999974
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=3.4e-11 Score=86.97 Aligned_cols=112 Identities=8% Similarity=-0.061 Sum_probs=80.1
Q ss_pred ccHHHHHHHHhhCCCCCCCCcEEEeCCCccHHHHHHHhc-CC-CeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCC
Q 038343 5 PSSLLLSEFILSFPEIFSNKSCFEVGSGVGLVGICLAHV-KA-SKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYED 82 (191)
Q Consensus 5 ~~a~~L~~~l~~~~~~~~~~~VLElG~GtG~~~~~la~~-g~-~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~ 82 (191)
.+...+.+++.......++.+|||+|||+|..+..+++. +. .+|+++|.++ +++.
T Consensus 5 r~~~~l~~~~~~~~~~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~~---------------------- 61 (180)
T 1ej0_A 5 RAWFKLDEIQQSDKLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDPI---------------------- 61 (180)
T ss_dssp HHHHHHHHHHHHHCCCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCCC----------------------
T ss_pred hHHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-cccc----------------------
Confidence 445566666655444557789999999999999987776 43 5999999987 5421
Q ss_pred CCeeEEEeecCCCCCc-----CCCCCCCCCEEEEcccccCCCCh-----------HHHHHHHHHHhccCCCCcc
Q 038343 83 PNVVQCVHLPWESASE-----SGLSAFVPEIILGADILYDRSCF-----------PDLVRILAILLNRRKSVSS 140 (191)
Q Consensus 83 ~~~i~~~~ldw~~~~~-----~~~~~~~fDvIi~~d~ly~~~~~-----------~~ll~~l~~ll~~~g~~~~ 140 (191)
.++.+...|+.+... ..+.+++||+|++..+++..... ..+++.+.++|+|+|....
T Consensus 62 -~~~~~~~~d~~~~~~~~~~~~~~~~~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~ 134 (180)
T 1ej0_A 62 -VGVDFLQGDFRDELVMKALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVV 134 (180)
T ss_dssp -TTEEEEESCTTSHHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred -CcEEEEEcccccchhhhhhhccCCCCceeEEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEE
Confidence 135666777654310 00344689999998888776665 7899999999999986543
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.19 E-value=1e-12 Score=101.29 Aligned_cols=103 Identities=12% Similarity=0.105 Sum_probs=77.3
Q ss_pred CCCcEEEeCCCccHHHHHHHhc-C-CCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcC
Q 038343 22 SNKSCFEVGSGVGLVGICLAHV-K-ASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASES 99 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~-g-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~ 99 (191)
++++|||+|||+|..++.+++. + ..+|+++|+++.+++.+++|++.++.. .++.+...|..+....
T Consensus 60 ~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~------------~~i~~~~gda~~~l~~ 127 (242)
T 3r3h_A 60 RAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQE------------HKIKLRLGPALDTLHS 127 (242)
T ss_dssp TCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCT------------TTEEEEESCHHHHHHH
T ss_pred CcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC------------CcEEEEEcCHHHHHHH
Confidence 5679999999999999988874 2 349999999999999999999988764 4577777665332111
Q ss_pred CC---CCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCc
Q 038343 100 GL---SAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVS 139 (191)
Q Consensus 100 ~~---~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~ 139 (191)
.. ..++||+|++.. .......+++.+.++|+|||...
T Consensus 128 ~~~~~~~~~fD~V~~d~---~~~~~~~~l~~~~~~LkpGG~lv 167 (242)
T 3r3h_A 128 LLNEGGEHQFDFIFIDA---DKTNYLNYYELALKLVTPKGLIA 167 (242)
T ss_dssp HHHHHCSSCEEEEEEES---CGGGHHHHHHHHHHHEEEEEEEE
T ss_pred HhhccCCCCEeEEEEcC---ChHHhHHHHHHHHHhcCCCeEEE
Confidence 00 135899998743 24567788999999999997533
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.18 E-value=1e-10 Score=91.68 Aligned_cols=102 Identities=18% Similarity=0.016 Sum_probs=74.4
Q ss_pred CCCcEEEeCCCccHHHHHHHhc-CCCeEEEEcCChHHHHHHHHHHHHh--cCCCCcccccccCCCCeeEEEeecCCCCCc
Q 038343 22 SNKSCFEVGSGVGLVGICLAHV-KASKVTLTDGDHLTLANMRSNLELN--QLSTDTSLLESYEDPNVVQCVHLPWESASE 98 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~-g~~~v~~tD~~~~~l~~~~~n~~~n--~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~ 98 (191)
++++|||||||+|.++..+++. +..+|+++|+++.+++.+++++... +.. ..++++...|..+...
T Consensus 75 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~-----------~~rv~v~~~D~~~~l~ 143 (275)
T 1iy9_A 75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLD-----------DPRVDVQVDDGFMHIA 143 (275)
T ss_dssp SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTT-----------STTEEEEESCSHHHHH
T ss_pred CCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccC-----------CCceEEEECcHHHHHh
Confidence 4679999999999999988877 5679999999999999999987542 221 1357777766432111
Q ss_pred CCCCCCCCCEEEEcccccCCC-----ChHHHHHHHHHHhccCCC
Q 038343 99 SGLSAFVPEIILGADILYDRS-----CFPDLVRILAILLNRRKS 137 (191)
Q Consensus 99 ~~~~~~~fDvIi~~d~ly~~~-----~~~~ll~~l~~ll~~~g~ 137 (191)
. ..++||+|++ |..+... ....+++.++++|+|+|.
T Consensus 144 ~--~~~~fD~Ii~-d~~~~~~~~~~l~~~~~~~~~~~~L~pgG~ 184 (275)
T 1iy9_A 144 K--SENQYDVIMV-DSTEPVGPAVNLFTKGFYAGIAKALKEDGI 184 (275)
T ss_dssp T--CCSCEEEEEE-SCSSCCSCCCCCSTTHHHHHHHHHEEEEEE
T ss_pred h--CCCCeeEEEE-CCCCCCCcchhhhHHHHHHHHHHhcCCCcE
Confidence 1 2357999998 5544211 136899999999999974
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=99.18 E-value=1e-11 Score=94.96 Aligned_cols=102 Identities=16% Similarity=0.098 Sum_probs=75.5
Q ss_pred CCCcEEEeCCCccHHHHHHHhcC--CCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcC
Q 038343 22 SNKSCFEVGSGVGLVGICLAHVK--ASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASES 99 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~g--~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~ 99 (191)
++.+|||+|||+|..++.+++.- ..+|+++|+++.+++.++++++.++.. .++.+...+..+....
T Consensus 72 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~------------~~i~~~~~d~~~~l~~ 139 (232)
T 3cbg_A 72 GAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVA------------EKISLRLGPALATLEQ 139 (232)
T ss_dssp TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCG------------GGEEEEESCHHHHHHH
T ss_pred CCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC------------CcEEEEEcCHHHHHHH
Confidence 56799999999999999888752 248999999999999999999887754 3466666654321110
Q ss_pred C-CCC--CCCCEEEEcccccCCCChHHHHHHHHHHhccCCCC
Q 038343 100 G-LSA--FVPEIILGADILYDRSCFPDLVRILAILLNRRKSV 138 (191)
Q Consensus 100 ~-~~~--~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~ 138 (191)
. ..+ ++||+|++... ......+++.+.++|+|||..
T Consensus 140 l~~~~~~~~fD~V~~d~~---~~~~~~~l~~~~~~LkpgG~l 178 (232)
T 3cbg_A 140 LTQGKPLPEFDLIFIDAD---KRNYPRYYEIGLNLLRRGGLM 178 (232)
T ss_dssp HHTSSSCCCEEEEEECSC---GGGHHHHHHHHHHTEEEEEEE
T ss_pred HHhcCCCCCcCEEEECCC---HHHHHHHHHHHHHHcCCCeEE
Confidence 0 111 57999997432 356788999999999999743
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.18 E-value=1.7e-10 Score=92.74 Aligned_cols=104 Identities=14% Similarity=0.123 Sum_probs=73.7
Q ss_pred CCCCCcEEEeCCCccHHHHHHHhc-CC-CeEEEEcCChHHHHHHHHHHHHh-------cCCCCcccccccCCCCeeEEEe
Q 038343 20 IFSNKSCFEVGSGVGLVGICLAHV-KA-SKVTLTDGDHLTLANMRSNLELN-------QLSTDTSLLESYEDPNVVQCVH 90 (191)
Q Consensus 20 ~~~~~~VLElG~GtG~~~~~la~~-g~-~~v~~tD~~~~~l~~~~~n~~~n-------~~~~~~~~~~~~~~~~~i~~~~ 90 (191)
..++.+|||+|||+|..++.+++. |+ .+|+++|+++.+++.+++|+... +... ...++.+..
T Consensus 103 ~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~---------~~~~v~~~~ 173 (336)
T 2b25_A 103 INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEE---------WPDNVDFIH 173 (336)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSC---------CCCCEEEEE
T ss_pred CCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccc---------cCCceEEEE
Confidence 457889999999999999988876 55 59999999999999999998753 2210 013577788
Q ss_pred ecCCCCCcCCCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCC
Q 038343 91 LPWESASESGLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSV 138 (191)
Q Consensus 91 ldw~~~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~ 138 (191)
.|..+... .+.+++||+|++.- .....+++.+.++|+|+|..
T Consensus 174 ~d~~~~~~-~~~~~~fD~V~~~~-----~~~~~~l~~~~~~LkpgG~l 215 (336)
T 2b25_A 174 KDISGATE-DIKSLTFDAVALDM-----LNPHVTLPVFYPHLKHGGVC 215 (336)
T ss_dssp SCTTCCC--------EEEEEECS-----SSTTTTHHHHGGGEEEEEEE
T ss_pred CChHHccc-ccCCCCeeEEEECC-----CCHHHHHHHHHHhcCCCcEE
Confidence 77765421 23345799999832 23344789999999999743
|
| >2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.17 E-value=2.8e-10 Score=95.14 Aligned_cols=102 Identities=15% Similarity=0.163 Sum_probs=75.6
Q ss_pred CCCcEEEeCCCccHHHHHHHhc-CC-CeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcC
Q 038343 22 SNKSCFEVGSGVGLVGICLAHV-KA-SKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASES 99 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~-g~-~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~ 99 (191)
++.+|||+|||+|..+..++.. +. .+|+++|+++.+++.+++|++.++.. ++.+...|..+...
T Consensus 259 ~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~-------------~v~~~~~D~~~~~~- 324 (450)
T 2yxl_A 259 PGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIK-------------IVKPLVKDARKAPE- 324 (450)
T ss_dssp TTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCC-------------SEEEECSCTTCCSS-
T ss_pred CcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCC-------------cEEEEEcChhhcch-
Confidence 6779999999999988877764 32 58999999999999999999988753 46677777654421
Q ss_pred CCCCCCCCEEEE------cccccCCCCh----------------HHHHHHHHHHhccCCC
Q 038343 100 GLSAFVPEIILG------ADILYDRSCF----------------PDLVRILAILLNRRKS 137 (191)
Q Consensus 100 ~~~~~~fDvIi~------~d~ly~~~~~----------------~~ll~~l~~ll~~~g~ 137 (191)
.+.+++||+|++ ..++...++. ..+++.+.++|+|||.
T Consensus 325 ~~~~~~fD~Vl~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~ 384 (450)
T 2yxl_A 325 IIGEEVADKVLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGR 384 (450)
T ss_dssp SSCSSCEEEEEEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEE
T ss_pred hhccCCCCEEEEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcE
Confidence 133357999996 2333333322 5788999999999973
|
| >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.17 E-value=2.4e-10 Score=87.58 Aligned_cols=111 Identities=9% Similarity=-0.056 Sum_probs=74.5
Q ss_pred CCCcEEEeCCCccHHHHHHHhcC-CCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCC
Q 038343 22 SNKSCFEVGSGVGLVGICLAHVK-ASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESG 100 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~g-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~ 100 (191)
++.+|||||||+|..++.+++.. ...|+++|+++.+++.++++++....... ....++.+...|..+.....
T Consensus 46 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~-------~~~~nv~~~~~d~~~~l~~~ 118 (235)
T 3ckk_A 46 AQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPA-------GGFQNIACLRSNAMKHLPNF 118 (235)
T ss_dssp CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTT-------CCCTTEEEEECCTTTCHHHH
T ss_pred CCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHh-------cCCCeEEEEECcHHHhhhhh
Confidence 45589999999999999888764 34899999999999999988764210000 00135778888775422211
Q ss_pred CCCCCCCEEEEcccccCCC--------ChHHHHHHHHHHhccCCCCc
Q 038343 101 LSAFVPEIILGADILYDRS--------CFPDLVRILAILLNRRKSVS 139 (191)
Q Consensus 101 ~~~~~fDvIi~~d~ly~~~--------~~~~ll~~l~~ll~~~g~~~ 139 (191)
+.+++||.|+..-.-.+.. ....+++.+.++|+|||...
T Consensus 119 ~~~~~~D~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~ 165 (235)
T 3ckk_A 119 FYKGQLTKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVY 165 (235)
T ss_dssp CCTTCEEEEEEESCC-----------CCCHHHHHHHHHHEEEEEEEE
T ss_pred CCCcCeeEEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEE
Confidence 3457899998632111110 12579999999999997543
|
| >3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.17 E-value=8.9e-11 Score=95.73 Aligned_cols=62 Identities=21% Similarity=0.266 Sum_probs=49.7
Q ss_pred HHHHHHHhhCCCCCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCC
Q 038343 8 LLLSEFILSFPEIFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLS 71 (191)
Q Consensus 8 ~~L~~~l~~~~~~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~ 71 (191)
..+..++...... .+.+|||+|||+|.+++.+++. +.+|+++|+++.+++.+++|++.|++.
T Consensus 200 ~~l~~~~~~~~~~-~~~~vLDl~cG~G~~~l~la~~-~~~V~gvd~~~~ai~~a~~n~~~ng~~ 261 (369)
T 3bt7_A 200 IQMLEWALDVTKG-SKGDLLELYCGNGNFSLALARN-FDRVLATEIAKPSVAAAQYNIAANHID 261 (369)
T ss_dssp HHHHHHHHHHTTT-CCSEEEEESCTTSHHHHHHGGG-SSEEEEECCCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHhhc-CCCEEEEccCCCCHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHHcCCC
Confidence 4555555443322 3568999999999999998885 459999999999999999999999863
|
| >1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=3.3e-11 Score=94.46 Aligned_cols=113 Identities=19% Similarity=0.111 Sum_probs=74.5
Q ss_pred CCCcEEEeCCCccH----HHHHHHhc-C----CCeEEEEcCChHHHHHHHHHHHHh-cCCCCc-------c---c---cc
Q 038343 22 SNKSCFEVGSGVGL----VGICLAHV-K----ASKVTLTDGDHLTLANMRSNLELN-QLSTDT-------S---L---LE 78 (191)
Q Consensus 22 ~~~~VLElG~GtG~----~~~~la~~-g----~~~v~~tD~~~~~l~~~~~n~~~n-~~~~~~-------~---~---~~ 78 (191)
+..+|||+|||||. +++.++.. + ..+|+++|+|+.+|+.+++++-.. ...... . . ..
T Consensus 105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~ 184 (274)
T 1af7_A 105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG 184 (274)
T ss_dssp SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence 34689999999997 56656553 3 128999999999999999874110 000000 0 0 00
Q ss_pred ----ccCCCCeeEEEeecCCCCCcCCCC-CCCCCEEEEcccccCCCC--hHHHHHHHHHHhccCCC
Q 038343 79 ----SYEDPNVVQCVHLPWESASESGLS-AFVPEIILGADILYDRSC--FPDLVRILAILLNRRKS 137 (191)
Q Consensus 79 ----~~~~~~~i~~~~ldw~~~~~~~~~-~~~fDvIi~~d~ly~~~~--~~~ll~~l~~ll~~~g~ 137 (191)
...-..++.+...|+.+.. ++ .++||+|+|.+++.+.+. ...+++.+.+.|+|||.
T Consensus 185 ~~~v~~~lr~~V~F~~~dl~~~~---~~~~~~fDlI~crnvliyf~~~~~~~vl~~~~~~L~pgG~ 247 (274)
T 1af7_A 185 LVRVRQELANYVEFSSVNLLEKQ---YNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGL 247 (274)
T ss_dssp EEEECHHHHTTEEEEECCTTCSS---CCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEE
T ss_pred ceeechhhcccCeEEecccCCCC---CCcCCCeeEEEECCchHhCCHHHHHHHHHHHHHHhCCCcE
Confidence 0000125788888886531 12 357999999988765543 37899999999999974
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.16 E-value=1.8e-10 Score=87.23 Aligned_cols=107 Identities=17% Similarity=0.117 Sum_probs=76.9
Q ss_pred CCCCCcEEEeCCCccHHHHHHHhcCC------CeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecC
Q 038343 20 IFSNKSCFEVGSGVGLVGICLAHVKA------SKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPW 93 (191)
Q Consensus 20 ~~~~~~VLElG~GtG~~~~~la~~g~------~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw 93 (191)
..++.+|||+|||+|..+..+++... .+|+++|+++.+++.+++++..++.... ...++.+...|.
T Consensus 78 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~--------~~~~v~~~~~d~ 149 (227)
T 2pbf_A 78 LKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELL--------KIDNFKIIHKNI 149 (227)
T ss_dssp SCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGG--------SSTTEEEEECCG
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCcccc--------ccCCEEEEECCh
Confidence 44678999999999999998887642 3899999999999999999988762000 002467777776
Q ss_pred CCCCcCC-CCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCcc
Q 038343 94 ESASESG-LSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVSS 140 (191)
Q Consensus 94 ~~~~~~~-~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~~ 140 (191)
.+..... ....+||+|++...+.+ +++.+.++|+|+|....
T Consensus 150 ~~~~~~~~~~~~~fD~I~~~~~~~~------~~~~~~~~LkpgG~lv~ 191 (227)
T 2pbf_A 150 YQVNEEEKKELGLFDAIHVGASASE------LPEILVDLLAENGKLII 191 (227)
T ss_dssp GGCCHHHHHHHCCEEEEEECSBBSS------CCHHHHHHEEEEEEEEE
T ss_pred HhcccccCccCCCcCEEEECCchHH------HHHHHHHhcCCCcEEEE
Confidence 5432000 12357999999877664 35788999999986554
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=4.4e-10 Score=85.05 Aligned_cols=105 Identities=16% Similarity=0.095 Sum_probs=75.8
Q ss_pred CCCCCcEEEeCCCccHHHHHHHhc-CC-CeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCC
Q 038343 20 IFSNKSCFEVGSGVGLVGICLAHV-KA-SKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESAS 97 (191)
Q Consensus 20 ~~~~~~VLElG~GtG~~~~~la~~-g~-~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~ 97 (191)
..++.+|||+|||+|..+..+++. +. .+|+++|+++.+++.+++++..++.... ...++.+...|.....
T Consensus 75 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~--------~~~~v~~~~~d~~~~~ 146 (226)
T 1i1n_A 75 LHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLL--------SSGRVQLVVGDGRMGY 146 (226)
T ss_dssp SCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHH--------HTSSEEEEESCGGGCC
T ss_pred CCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhccccc--------CCCcEEEEECCcccCc
Confidence 346789999999999999987765 43 3899999999999999999887653000 0024677777764322
Q ss_pred cCCCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCccc
Q 038343 98 ESGLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVSSS 141 (191)
Q Consensus 98 ~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~~~ 141 (191)
....+||+|++..++.+ +++.+.++|+|+|.....
T Consensus 147 ---~~~~~fD~i~~~~~~~~------~~~~~~~~LkpgG~lv~~ 181 (226)
T 1i1n_A 147 ---AEEAPYDAIHVGAAAPV------VPQALIDQLKPGGRLILP 181 (226)
T ss_dssp ---GGGCCEEEEEECSBBSS------CCHHHHHTEEEEEEEEEE
T ss_pred ---ccCCCcCEEEECCchHH------HHHHHHHhcCCCcEEEEE
Confidence 12357999998776643 346889999999865543
|
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.14 E-value=1.3e-10 Score=88.23 Aligned_cols=106 Identities=16% Similarity=0.109 Sum_probs=75.8
Q ss_pred CCCCCcEEEeCCCccHHHHHHHhc-CC------CeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeec
Q 038343 20 IFSNKSCFEVGSGVGLVGICLAHV-KA------SKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLP 92 (191)
Q Consensus 20 ~~~~~~VLElG~GtG~~~~~la~~-g~------~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ld 92 (191)
..++.+|||+|||+|..+..+++. +. .+|+++|+++.+++.+++++..++.... ...++.+...|
T Consensus 82 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~--------~~~~v~~~~~d 153 (227)
T 1r18_A 82 LKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSML--------DSGQLLIVEGD 153 (227)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHH--------HHTSEEEEESC
T ss_pred CCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCcccc--------CCCceEEEECC
Confidence 446789999999999998877773 42 3899999999999999999876541000 00246677776
Q ss_pred CCCCCcCCCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCcccc
Q 038343 93 WESASESGLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVSSSR 142 (191)
Q Consensus 93 w~~~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~~~~ 142 (191)
..+... ...+||+|++...+++. .+.+.++|+|+|......
T Consensus 154 ~~~~~~---~~~~fD~I~~~~~~~~~------~~~~~~~LkpgG~lvi~~ 194 (227)
T 1r18_A 154 GRKGYP---PNAPYNAIHVGAAAPDT------PTELINQLASGGRLIVPV 194 (227)
T ss_dssp GGGCCG---GGCSEEEEEECSCBSSC------CHHHHHTEEEEEEEEEEE
T ss_pred cccCCC---cCCCccEEEECCchHHH------HHHHHHHhcCCCEEEEEE
Confidence 654221 12579999998877654 378899999998655443
|
| >1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=99.14 E-value=2.3e-10 Score=90.13 Aligned_cols=85 Identities=15% Similarity=0.126 Sum_probs=63.2
Q ss_pred HHHhhCCCCCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEee
Q 038343 12 EFILSFPEIFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHL 91 (191)
Q Consensus 12 ~~l~~~~~~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~l 91 (191)
+.+.......++.+|||+|||+|..+..+++.+. +|+++|+++.+++.+++++..++.. .++.+...
T Consensus 18 ~~i~~~~~~~~~~~VLDiG~G~G~lt~~L~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~------------~~v~~~~~ 84 (285)
T 1zq9_A 18 NSIIDKAALRPTDVVLEVGPGTGNMTVKLLEKAK-KVVACELDPRLVAELHKRVQGTPVA------------SKLQVLVG 84 (285)
T ss_dssp HHHHHHTCCCTTCEEEEECCTTSTTHHHHHHHSS-EEEEEESCHHHHHHHHHHHTTSTTG------------GGEEEEES
T ss_pred HHHHHhcCCCCCCEEEEEcCcccHHHHHHHhhCC-EEEEEECCHHHHHHHHHHHHhcCCC------------CceEEEEc
Confidence 3343333344677999999999999998888866 9999999999999999987655432 25777787
Q ss_pred cCCCCCcCCCCCCCCCEEEEccc
Q 038343 92 PWESASESGLSAFVPEIILGADI 114 (191)
Q Consensus 92 dw~~~~~~~~~~~~fDvIi~~d~ 114 (191)
|..+.. + .+||+|+++-+
T Consensus 85 D~~~~~---~--~~fD~vv~nlp 102 (285)
T 1zq9_A 85 DVLKTD---L--PFFDTCVANLP 102 (285)
T ss_dssp CTTTSC---C--CCCSEEEEECC
T ss_pred ceeccc---c--hhhcEEEEecC
Confidence 775432 1 26999998533
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=99.13 E-value=1.4e-11 Score=92.89 Aligned_cols=106 Identities=14% Similarity=0.084 Sum_probs=71.3
Q ss_pred CCCcEEEeCCCccHHHHHHHhcC-CCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCC
Q 038343 22 SNKSCFEVGSGVGLVGICLAHVK-ASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESG 100 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~g-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~ 100 (191)
++.+|||+|||+|..+..+++.+ ..+|+++|+++.+++.+.+++..+.... ...++.+...|..+..
T Consensus 27 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~---------~~~~v~~~~~d~~~l~--- 94 (218)
T 3mq2_A 27 YDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKG---------GLPNLLYLWATAERLP--- 94 (218)
T ss_dssp SSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGT---------CCTTEEEEECCSTTCC---
T ss_pred CCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhc---------CCCceEEEecchhhCC---
Confidence 56799999999999999888874 3499999999999886554443321110 0135778888876543
Q ss_pred CCCCCCCEEEEc---cccc--CCCChHHHHHHHHHHhccCCCCcc
Q 038343 101 LSAFVPEIILGA---DILY--DRSCFPDLVRILAILLNRRKSVSS 140 (191)
Q Consensus 101 ~~~~~fDvIi~~---d~ly--~~~~~~~ll~~l~~ll~~~g~~~~ 140 (191)
+..+. |.|... ...+ +..+...+++.+.++|||+|....
T Consensus 95 ~~~~~-d~v~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 138 (218)
T 3mq2_A 95 PLSGV-GELHVLMPWGSLLRGVLGSSPEMLRGMAAVCRPGASFLV 138 (218)
T ss_dssp SCCCE-EEEEEESCCHHHHHHHHTSSSHHHHHHHHTEEEEEEEEE
T ss_pred CCCCC-CEEEEEccchhhhhhhhccHHHHHHHHHHHcCCCcEEEE
Confidence 22334 666521 1111 334558899999999999986554
|
| >1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=3e-11 Score=98.94 Aligned_cols=102 Identities=15% Similarity=0.065 Sum_probs=76.2
Q ss_pred CCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCC-
Q 038343 22 SNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESG- 100 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~- 100 (191)
++.+|||+|||+|..++.+++. +.+|+++|+++.+++.+++|++.|++. ++.+...|..+.....
T Consensus 209 ~~~~VLDlg~G~G~~~~~la~~-~~~v~~vD~s~~~~~~a~~n~~~n~~~-------------~~~~~~~d~~~~~~~~~ 274 (382)
T 1wxx_A 209 RGERALDVFSYAGGFALHLALG-FREVVAVDSSAEALRRAEENARLNGLG-------------NVRVLEANAFDLLRRLE 274 (382)
T ss_dssp CEEEEEEETCTTTHHHHHHHHH-EEEEEEEESCHHHHHHHHHHHHHTTCT-------------TEEEEESCHHHHHHHHH
T ss_pred CCCeEEEeeeccCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCCC-------------CceEEECCHHHHHHHHH
Confidence 6779999999999999988887 569999999999999999999999864 2666666653321100
Q ss_pred CCCCCCCEEEEcccccCC---------CChHHHHHHHHHHhccCCC
Q 038343 101 LSAFVPEIILGADILYDR---------SCFPDLVRILAILLNRRKS 137 (191)
Q Consensus 101 ~~~~~fDvIi~~d~ly~~---------~~~~~ll~~l~~ll~~~g~ 137 (191)
....+||+|++....+.. .....++..+.++|+|+|.
T Consensus 275 ~~~~~fD~Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~ 320 (382)
T 1wxx_A 275 KEGERFDLVVLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGI 320 (382)
T ss_dssp HTTCCEEEEEECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEE
T ss_pred hcCCCeeEEEECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCE
Confidence 013579999984333222 2356788889999999974
|
| >2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.11 E-value=6.7e-10 Score=93.42 Aligned_cols=101 Identities=10% Similarity=0.051 Sum_probs=73.1
Q ss_pred CCCcEEEeCCCccHHHHHHHhc-C-CCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcC
Q 038343 22 SNKSCFEVGSGVGLVGICLAHV-K-ASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASES 99 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~-g-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~ 99 (191)
++.+|||+|||+|..++.++.. + ..+|+++|+++.+++.+++|++.++.. ++.+...|......
T Consensus 117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~-------------nv~~~~~D~~~~~~- 182 (479)
T 2frx_A 117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGIS-------------NVALTHFDGRVFGA- 182 (479)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCC-------------SEEEECCCSTTHHH-
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC-------------cEEEEeCCHHHhhh-
Confidence 6779999999999999877764 2 348999999999999999999988753 36666666543211
Q ss_pred CCCCCCCCEEEEc------ccccCCCC----------------hHHHHHHHHHHhccCCC
Q 038343 100 GLSAFVPEIILGA------DILYDRSC----------------FPDLVRILAILLNRRKS 137 (191)
Q Consensus 100 ~~~~~~fDvIi~~------d~ly~~~~----------------~~~ll~~l~~ll~~~g~ 137 (191)
...++||.|++. .++...++ ...+++.+.++|+|||.
T Consensus 183 -~~~~~fD~Il~D~PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~ 241 (479)
T 2frx_A 183 -AVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGT 241 (479)
T ss_dssp -HSTTCEEEEEEECCCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEE
T ss_pred -hccccCCEEEECCCcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCE
Confidence 123579999971 12222111 24678888999999973
|
| >3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=1.3e-10 Score=95.28 Aligned_cols=98 Identities=13% Similarity=0.074 Sum_probs=74.3
Q ss_pred CCCcEEEeCCCccHHHHHHHhc--CCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCe-eEEEeecCCCCCc
Q 038343 22 SNKSCFEVGSGVGLVGICLAHV--KASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNV-VQCVHLPWESASE 98 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~--g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~-i~~~~ldw~~~~~ 98 (191)
++.+|||++||+|..++.+++. |+.+|+++|+++.+++.+++|++.|++. ++ +.+...|..+...
T Consensus 52 ~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~------------~~~v~v~~~Da~~~l~ 119 (392)
T 3axs_A 52 RPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIP------------EDRYEIHGMEANFFLR 119 (392)
T ss_dssp SCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCC------------GGGEEEECSCHHHHHH
T ss_pred CCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCC------------CceEEEEeCCHHHHHH
Confidence 4679999999999999987773 5579999999999999999999999875 23 6666665432211
Q ss_pred CCCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCC
Q 038343 99 SGLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRK 136 (191)
Q Consensus 99 ~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g 136 (191)
... ..+||+|++ |. | .....++....++|+++|
T Consensus 120 ~~~-~~~fD~V~l-DP-~--g~~~~~l~~a~~~Lk~gG 152 (392)
T 3axs_A 120 KEW-GFGFDYVDL-DP-F--GTPVPFIESVALSMKRGG 152 (392)
T ss_dssp SCC-SSCEEEEEE-CC-S--SCCHHHHHHHHHHEEEEE
T ss_pred Hhh-CCCCcEEEE-CC-C--cCHHHHHHHHHHHhCCCC
Confidence 011 247999997 55 3 234678999999999986
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=2.9e-10 Score=90.02 Aligned_cols=102 Identities=14% Similarity=0.023 Sum_probs=72.2
Q ss_pred CCCcEEEeCCCccHHHHHHHhc-CCCeEEEEcCChHHHHHHHHHHHH--hcCCCCcccccccCCCCeeEEEeecCCCCCc
Q 038343 22 SNKSCFEVGSGVGLVGICLAHV-KASKVTLTDGDHLTLANMRSNLEL--NQLSTDTSLLESYEDPNVVQCVHLPWESASE 98 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~-g~~~v~~tD~~~~~l~~~~~n~~~--n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~ 98 (191)
++.+|||||||+|..+..+++. +..+|+++|+++.+++.+++++.. +... ..++.+...|..+...
T Consensus 90 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~-----------~~~v~~~~~D~~~~l~ 158 (296)
T 1inl_A 90 NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFD-----------DPRAEIVIANGAEYVR 158 (296)
T ss_dssp SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGG-----------CTTEEEEESCHHHHGG
T ss_pred CCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccC-----------CCceEEEECcHHHHHh
Confidence 3579999999999999988876 456999999999999999998764 2221 1356777766432211
Q ss_pred CCCCCCCCCEEEEcccccC-CC-----ChHHHHHHHHHHhccCCC
Q 038343 99 SGLSAFVPEIILGADILYD-RS-----CFPDLVRILAILLNRRKS 137 (191)
Q Consensus 99 ~~~~~~~fDvIi~~d~ly~-~~-----~~~~ll~~l~~ll~~~g~ 137 (191)
...++||+|++ |.... .. ....+++.++++|+|+|.
T Consensus 159 --~~~~~fD~Ii~-d~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~ 200 (296)
T 1inl_A 159 --KFKNEFDVIII-DSTDPTAGQGGHLFTEEFYQACYDALKEDGV 200 (296)
T ss_dssp --GCSSCEEEEEE-EC----------CCSHHHHHHHHHHEEEEEE
T ss_pred --hCCCCceEEEE-cCCCcccCchhhhhHHHHHHHHHHhcCCCcE
Confidence 12357999997 33221 11 237889999999999974
|
| >2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=1.3e-10 Score=91.55 Aligned_cols=105 Identities=12% Similarity=0.068 Sum_probs=72.4
Q ss_pred CCCcEEEeCCCccHHHHHHHhcC-CCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCC
Q 038343 22 SNKSCFEVGSGVGLVGICLAHVK-ASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESG 100 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~g-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~ 100 (191)
++++|||||||+|..+..+++.. ..+|+++|+++.+++.+++++..++.... ..++.+...|..+....
T Consensus 78 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~---------~~~v~~~~~D~~~~l~~- 147 (283)
T 2i7c_A 78 EPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYE---------DKRVNVFIEDASKFLEN- 147 (283)
T ss_dssp SCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGG---------STTEEEEESCHHHHHHH-
T ss_pred CCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccC---------CCcEEEEECChHHHHHh-
Confidence 45799999999999999888763 45999999999999999988754321100 13566666664322111
Q ss_pred CCCCCCCEEEEc--ccccCCCCh--HHHHHHHHHHhccCCC
Q 038343 101 LSAFVPEIILGA--DILYDRSCF--PDLVRILAILLNRRKS 137 (191)
Q Consensus 101 ~~~~~fDvIi~~--d~ly~~~~~--~~ll~~l~~ll~~~g~ 137 (191)
..++||+|++. +.+...... ..+++.++++|+|+|.
T Consensus 148 -~~~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~ 187 (283)
T 2i7c_A 148 -VTNTYDVIIVDSSDPIGPAETLFNQNFYEKIYNALKPNGY 187 (283)
T ss_dssp -CCSCEEEEEEECCCTTTGGGGGSSHHHHHHHHHHEEEEEE
T ss_pred -CCCCceEEEEcCCCCCCcchhhhHHHHHHHHHHhcCCCcE
Confidence 13579999982 221111111 6899999999999974
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=2e-10 Score=90.33 Aligned_cols=107 Identities=11% Similarity=-0.028 Sum_probs=71.6
Q ss_pred CCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHh--cCCCCcccccccCCCCeeEEEeecCCCCCcC
Q 038343 22 SNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELN--QLSTDTSLLESYEDPNVVQCVHLPWESASES 99 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n--~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~ 99 (191)
++++|||||||+|..+..+++.+..+|+++|+++.+++.+++++ .. +... ...+....++.+...|..+....
T Consensus 75 ~~~~VLdiG~G~G~~~~~l~~~~~~~v~~vDid~~~i~~ar~~~-~~~~~l~~----~~~~~~~~~v~~~~~D~~~~l~~ 149 (281)
T 1mjf_A 75 KPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLI-KIDNGLLE----AMLNGKHEKAKLTIGDGFEFIKN 149 (281)
T ss_dssp CCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHT-CTTTTHHH----HHHTTCCSSEEEEESCHHHHHHH
T ss_pred CCCeEEEEcCCcCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH-hhcccccc----ccccCCCCcEEEEECchHHHhcc
Confidence 45799999999999999888776669999999999999999987 32 1100 00000013566666653221111
Q ss_pred CCCCCCCCEEEEcccccCC---CC--hHHHHHHHHHHhccCCC
Q 038343 100 GLSAFVPEIILGADILYDR---SC--FPDLVRILAILLNRRKS 137 (191)
Q Consensus 100 ~~~~~~fDvIi~~d~ly~~---~~--~~~ll~~l~~ll~~~g~ 137 (191)
.++||+|++ |..+.. .. ...+++.+.++|+|+|.
T Consensus 150 ---~~~fD~Ii~-d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~ 188 (281)
T 1mjf_A 150 ---NRGFDVIIA-DSTDPVGPAKVLFSEEFYRYVYDALNNPGI 188 (281)
T ss_dssp ---CCCEEEEEE-ECCCCC-----TTSHHHHHHHHHHEEEEEE
T ss_pred ---cCCeeEEEE-CCCCCCCcchhhhHHHHHHHHHHhcCCCcE
Confidence 357999997 443321 11 37789999999999974
|
| >2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=2.2e-10 Score=93.69 Aligned_cols=96 Identities=20% Similarity=0.073 Sum_probs=73.4
Q ss_pred CCCcEEEeCCCccHHHHHHHhc-CCCeEEEEcCChHHHHHHHHHHHHh---------------cCCCCcccccccCCCCe
Q 038343 22 SNKSCFEVGSGVGLVGICLAHV-KASKVTLTDGDHLTLANMRSNLELN---------------QLSTDTSLLESYEDPNV 85 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~-g~~~v~~tD~~~~~l~~~~~n~~~n---------------~~~~~~~~~~~~~~~~~ 85 (191)
++.+|||+|||+|..++.+++. ++.+|+++|+++.+++.+++|++.| ++. +
T Consensus 47 ~~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~-------------~ 113 (378)
T 2dul_A 47 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEK-------------T 113 (378)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSS-------------E
T ss_pred CCCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCC-------------c
Confidence 5779999999999999987775 6568999999999999999999999 432 2
Q ss_pred eEEEeecCCCCCcCCCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCC
Q 038343 86 VQCVHLPWESASESGLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRK 136 (191)
Q Consensus 86 i~~~~ldw~~~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g 136 (191)
+.+...|..+.... ...+||+|+. |..+ ....++....++++++|
T Consensus 114 i~v~~~Da~~~~~~--~~~~fD~I~l-DP~~---~~~~~l~~a~~~lk~gG 158 (378)
T 2dul_A 114 IVINHDDANRLMAE--RHRYFHFIDL-DPFG---SPMEFLDTALRSAKRRG 158 (378)
T ss_dssp EEEEESCHHHHHHH--STTCEEEEEE-CCSS---CCHHHHHHHHHHEEEEE
T ss_pred eEEEcCcHHHHHHh--ccCCCCEEEe-CCCC---CHHHHHHHHHHhcCCCC
Confidence 66666654332111 1247999994 6643 24688899999999986
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=1.1e-10 Score=92.90 Aligned_cols=109 Identities=8% Similarity=-0.050 Sum_probs=73.7
Q ss_pred CCCcEEEeCCCccHHHHHHHhc-CCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCC
Q 038343 22 SNKSCFEVGSGVGLVGICLAHV-KASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESG 100 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~-g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~ 100 (191)
++++|||+|||+|..+..+++. +..+|+++|+++.+++.+++++........ ..++.+...|..+....
T Consensus 95 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~---------~~~v~~~~~D~~~~~~~- 164 (304)
T 3bwc_A 95 KPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLA---------DPRATVRVGDGLAFVRQ- 164 (304)
T ss_dssp SCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGG---------CTTEEEEESCHHHHHHS-
T ss_pred CCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccC---------CCcEEEEECcHHHHHHh-
Confidence 4679999999999999988876 345999999999999999988743110000 13577777665432111
Q ss_pred CCCCCCCEEEEcccccCCCC----hHHHHHHHHHHhccCCCCcc
Q 038343 101 LSAFVPEIILGADILYDRSC----FPDLVRILAILLNRRKSVSS 140 (191)
Q Consensus 101 ~~~~~fDvIi~~d~ly~~~~----~~~ll~~l~~ll~~~g~~~~ 140 (191)
..+++||+|++.-..+.... ...+++.++++|+|+|....
T Consensus 165 ~~~~~fDvIi~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~ 208 (304)
T 3bwc_A 165 TPDNTYDVVIIDTTDPAGPASKLFGEAFYKDVLRILKPDGICCN 208 (304)
T ss_dssp SCTTCEEEEEEECC---------CCHHHHHHHHHHEEEEEEEEE
T ss_pred ccCCceeEEEECCCCccccchhhhHHHHHHHHHHhcCCCcEEEE
Confidence 12468999998433322111 16889999999999986544
|
| >3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=8e-10 Score=84.48 Aligned_cols=94 Identities=11% Similarity=-0.036 Sum_probs=69.5
Q ss_pred CCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCCC
Q 038343 22 SNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESGL 101 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~~ 101 (191)
+..+|||||||+|.+++.+. +...|+++|+++.+++.+++++..++. ...+...|.....
T Consensus 105 ~p~~VLDlGCG~gpLal~~~--~~~~y~a~DId~~~i~~ar~~~~~~g~--------------~~~~~v~D~~~~~---- 164 (253)
T 3frh_A 105 TPRRVLDIACGLNPLALYER--GIASVWGCDIHQGLGDVITPFAREKDW--------------DFTFALQDVLCAP---- 164 (253)
T ss_dssp CCSEEEEETCTTTHHHHHHT--TCSEEEEEESBHHHHHHHHHHHHHTTC--------------EEEEEECCTTTSC----
T ss_pred CCCeEEEecCCccHHHHHhc--cCCeEEEEeCCHHHHHHHHHHHHhcCC--------------CceEEEeecccCC----
Confidence 56699999999999999777 556999999999999999999988873 3566666654332
Q ss_pred CCCCCCEEEEcccccCCC--ChHHHHHHHHHHhccCC
Q 038343 102 SAFVPEIILGADILYDRS--CFPDLVRILAILLNRRK 136 (191)
Q Consensus 102 ~~~~fDvIi~~d~ly~~~--~~~~ll~~l~~ll~~~g 136 (191)
..++||+|++..++++.+ ....+. .+.+.|++++
T Consensus 165 ~~~~~DvvLllk~lh~LE~q~~~~~~-~ll~aL~~~~ 200 (253)
T 3frh_A 165 PAEAGDLALIFKLLPLLEREQAGSAM-ALLQSLNTPR 200 (253)
T ss_dssp CCCBCSEEEEESCHHHHHHHSTTHHH-HHHHHCBCSE
T ss_pred CCCCcchHHHHHHHHHhhhhchhhHH-HHHHHhcCCC
Confidence 335899999997777432 223344 4445666663
|
| >2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.08 E-value=4e-10 Score=89.34 Aligned_cols=78 Identities=17% Similarity=0.150 Sum_probs=57.9
Q ss_pred CCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcC
Q 038343 20 IFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASES 99 (191)
Q Consensus 20 ~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~ 99 (191)
..++.+|||+|||+|..+..+++.+. +|+++|+++.+++.+++++..++.. ++.+...|..+..
T Consensus 40 ~~~~~~VLDiG~G~G~lt~~La~~~~-~v~~vDi~~~~~~~a~~~~~~~~~~-------------~v~~~~~D~~~~~-- 103 (299)
T 2h1r_A 40 IKSSDIVLEIGCGTGNLTVKLLPLAK-KVITIDIDSRMISEVKKRCLYEGYN-------------NLEVYEGDAIKTV-- 103 (299)
T ss_dssp CCTTCEEEEECCTTSTTHHHHTTTSS-EEEEECSCHHHHHHHHHHHHHTTCC-------------CEEC----CCSSC--
T ss_pred CCCcCEEEEEcCcCcHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHHcCCC-------------ceEEEECchhhCC--
Confidence 34677999999999999999998865 9999999999999999998776532 4666666665432
Q ss_pred CCCCCCCCEEEEcccccC
Q 038343 100 GLSAFVPEIILGADILYD 117 (191)
Q Consensus 100 ~~~~~~fDvIi~~d~ly~ 117 (191)
..+||+|+++ ..|+
T Consensus 104 ---~~~~D~Vv~n-~py~ 117 (299)
T 2h1r_A 104 ---FPKFDVCTAN-IPYK 117 (299)
T ss_dssp ---CCCCSEEEEE-CCGG
T ss_pred ---cccCCEEEEc-CCcc
Confidence 2379999985 4444
|
| >3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=2.4e-10 Score=95.59 Aligned_cols=110 Identities=11% Similarity=0.022 Sum_probs=75.1
Q ss_pred HHHHHHHHhhCCCCCCCCcEEEeCCCccHHHHHHHhc-C-CCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCC
Q 038343 7 SLLLSEFILSFPEIFSNKSCFEVGSGVGLVGICLAHV-K-ASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPN 84 (191)
Q Consensus 7 a~~L~~~l~~~~~~~~~~~VLElG~GtG~~~~~la~~-g-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~ 84 (191)
+..++.++. ..++.+|||+|||+|..++.++.. + ..+|+++|+++.+++.+++|++.++..
T Consensus 90 s~l~a~~L~----~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~------------- 152 (464)
T 3m6w_A 90 AQAVGVLLD----PKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAP------------- 152 (464)
T ss_dssp THHHHHHHC----CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCC-------------
T ss_pred HHHHHHhcC----cCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCe-------------
Confidence 445555542 236779999999999999977764 2 248999999999999999999998743
Q ss_pred eeEEEeecCCCCCcCCCCCCCCCEEEE------cccccCCCCh----------------HHHHHHHHHHhccCC
Q 038343 85 VVQCVHLPWESASESGLSAFVPEIILG------ADILYDRSCF----------------PDLVRILAILLNRRK 136 (191)
Q Consensus 85 ~i~~~~ldw~~~~~~~~~~~~fDvIi~------~d~ly~~~~~----------------~~ll~~l~~ll~~~g 136 (191)
+.+...|..+... ...++||+|++ ..++...++. ..+++.+.++|+|||
T Consensus 153 -v~~~~~Da~~l~~--~~~~~FD~Il~D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG 223 (464)
T 3m6w_A 153 -LAVTQAPPRALAE--AFGTYFHRVLLDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGG 223 (464)
T ss_dssp -CEEECSCHHHHHH--HHCSCEEEEEEECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEE
T ss_pred -EEEEECCHHHhhh--hccccCCEEEECCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 4445444322110 11357999996 1122222221 678888899999996
|
| >2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=1.5e-10 Score=92.68 Aligned_cols=103 Identities=11% Similarity=0.018 Sum_probs=72.8
Q ss_pred CCCcEEEeCCCccHHHHHHHhc-CCCeEEEEcCChHHHHHHHHHHHH--hcCCCCcccccccCCCCeeEEEeecCCCCCc
Q 038343 22 SNKSCFEVGSGVGLVGICLAHV-KASKVTLTDGDHLTLANMRSNLEL--NQLSTDTSLLESYEDPNVVQCVHLPWESASE 98 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~-g~~~v~~tD~~~~~l~~~~~n~~~--n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~ 98 (191)
++++|||+|||+|..+..+++. +..+|+++|+++.+++.+++++.. ++.. ..++++...|+.+...
T Consensus 116 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~-----------~~~v~~~~~D~~~~l~ 184 (321)
T 2pt6_A 116 EPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYE-----------DKRVNVFIEDASKFLE 184 (321)
T ss_dssp SCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGG-----------STTEEEEESCHHHHHH
T ss_pred CCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccC-----------CCcEEEEEccHHHHHh
Confidence 4579999999999999988876 446999999999999999998765 2221 1357777776533211
Q ss_pred CCCCCCCCCEEEEcc--cccCCCC--hHHHHHHHHHHhccCCC
Q 038343 99 SGLSAFVPEIILGAD--ILYDRSC--FPDLVRILAILLNRRKS 137 (191)
Q Consensus 99 ~~~~~~~fDvIi~~d--~ly~~~~--~~~ll~~l~~ll~~~g~ 137 (191)
...++||+|++.- .+..... ...+++.++++|+|+|.
T Consensus 185 --~~~~~fDvIi~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~ 225 (321)
T 2pt6_A 185 --NVTNTYDVIIVDSSDPIGPAETLFNQNFYEKIYNALKPNGY 225 (321)
T ss_dssp --HCCSCEEEEEEECCCSSSGGGGGSSHHHHHHHHHHEEEEEE
T ss_pred --hcCCCceEEEECCcCCCCcchhhhHHHHHHHHHHhcCCCcE
Confidence 1235799999732 1110111 17899999999999974
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.06 E-value=4.8e-10 Score=84.15 Aligned_cols=84 Identities=11% Similarity=0.019 Sum_probs=63.9
Q ss_pred CCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCC
Q 038343 21 FSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESG 100 (191)
Q Consensus 21 ~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~ 100 (191)
.++.+|||+|||+|..+..++ .+|+++|+++. . +.+...|..+. .
T Consensus 66 ~~~~~vLDiG~G~G~~~~~l~----~~v~~~D~s~~------------~----------------~~~~~~d~~~~---~ 110 (215)
T 2zfu_A 66 PASLVVADFGCGDCRLASSIR----NPVHCFDLASL------------D----------------PRVTVCDMAQV---P 110 (215)
T ss_dssp CTTSCEEEETCTTCHHHHHCC----SCEEEEESSCS------------S----------------TTEEESCTTSC---S
T ss_pred CCCCeEEEECCcCCHHHHHhh----ccEEEEeCCCC------------C----------------ceEEEeccccC---C
Confidence 356799999999999887663 48999999876 1 12344554432 1
Q ss_pred CCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCcc
Q 038343 101 LSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVSS 140 (191)
Q Consensus 101 ~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~~ 140 (191)
+.+++||+|++..++++ .+...+++.+.++|+|||....
T Consensus 111 ~~~~~fD~v~~~~~l~~-~~~~~~l~~~~~~L~~gG~l~i 149 (215)
T 2zfu_A 111 LEDESVDVAVFCLSLMG-TNIRDFLEEANRVLKPGGLLKV 149 (215)
T ss_dssp CCTTCEEEEEEESCCCS-SCHHHHHHHHHHHEEEEEEEEE
T ss_pred CCCCCEeEEEEehhccc-cCHHHHHHHHHHhCCCCeEEEE
Confidence 34568999999999975 7899999999999999986443
|
| >3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=2.4e-10 Score=88.25 Aligned_cols=95 Identities=7% Similarity=-0.083 Sum_probs=72.6
Q ss_pred CCcEEEeCCCccHHHHHHHhc-CCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCCC
Q 038343 23 NKSCFEVGSGVGLVGICLAHV-KASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESGL 101 (191)
Q Consensus 23 ~~~VLElG~GtG~~~~~la~~-g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~~ 101 (191)
..+|||||||+|.+++.++.. +..+|+++|+|+.+++.++.|+..++.. ..+...|.-.. .
T Consensus 133 p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g~~--------------~~~~v~D~~~~----~ 194 (281)
T 3lcv_B 133 PNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLNVP--------------HRTNVADLLED----R 194 (281)
T ss_dssp CSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTTCC--------------EEEEECCTTTS----C
T ss_pred CceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcCCC--------------ceEEEeeeccc----C
Confidence 559999999999999977776 4569999999999999999999998854 45555554332 2
Q ss_pred CCCCCCEEEEcccccCCCC--hHHHHHHHHHHhccCC
Q 038343 102 SAFVPEIILGADILYDRSC--FPDLVRILAILLNRRK 136 (191)
Q Consensus 102 ~~~~fDvIi~~d~ly~~~~--~~~ll~~l~~ll~~~g 136 (191)
..++||+|++..++.+.++ -...+ .+.+.|++++
T Consensus 195 p~~~~DvaL~lkti~~Le~q~kg~g~-~ll~aL~~~~ 230 (281)
T 3lcv_B 195 LDEPADVTLLLKTLPCLETQQRGSGW-EVIDIVNSPN 230 (281)
T ss_dssp CCSCCSEEEETTCHHHHHHHSTTHHH-HHHHHSSCSE
T ss_pred CCCCcchHHHHHHHHHhhhhhhHHHH-HHHHHhCCCC
Confidence 4468999999998886432 23444 6777777775
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=99.06 E-value=2.2e-10 Score=92.53 Aligned_cols=99 Identities=13% Similarity=0.084 Sum_probs=72.3
Q ss_pred CCCCcEEEeCCCccHHHHHHHhcCC-CeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcC
Q 038343 21 FSNKSCFEVGSGVGLVGICLAHVKA-SKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASES 99 (191)
Q Consensus 21 ~~~~~VLElG~GtG~~~~~la~~g~-~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~ 99 (191)
.++.+|||+|||+|..+..+++... .+++++|. +.++. +++++..+. ..++.+...|+.+.
T Consensus 183 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~--~~~~~~~~~------------~~~v~~~~~d~~~~--- 244 (348)
T 3lst_A 183 PATGTVADVGGGRGGFLLTVLREHPGLQGVLLDR-AEVVA--RHRLDAPDV------------AGRWKVVEGDFLRE--- 244 (348)
T ss_dssp CSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEEC-HHHHT--TCCCCCGGG------------TTSEEEEECCTTTC---
T ss_pred cCCceEEEECCccCHHHHHHHHHCCCCEEEEecC-HHHhh--cccccccCC------------CCCeEEEecCCCCC---
Confidence 3567999999999999987776533 37999999 55543 222211121 14688888887522
Q ss_pred CCCCCCCCEEEEcccccCCCCh--HHHHHHHHHHhccCCCCcc
Q 038343 100 GLSAFVPEIILGADILYDRSCF--PDLVRILAILLNRRKSVSS 140 (191)
Q Consensus 100 ~~~~~~fDvIi~~d~ly~~~~~--~~ll~~l~~ll~~~g~~~~ 140 (191)
++ +||+|++..++++..+. ..+++.++++|+|||....
T Consensus 245 -~p--~~D~v~~~~vlh~~~d~~~~~~L~~~~~~LkpgG~l~i 284 (348)
T 3lst_A 245 -VP--HADVHVLKRILHNWGDEDSVRILTNCRRVMPAHGRVLV 284 (348)
T ss_dssp -CC--CCSEEEEESCGGGSCHHHHHHHHHHHHHTCCTTCEEEE
T ss_pred -CC--CCcEEEEehhccCCCHHHHHHHHHHHHHhcCCCCEEEE
Confidence 22 79999999999988776 6999999999999986543
|
| >3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=99.06 E-value=7e-10 Score=90.95 Aligned_cols=111 Identities=14% Similarity=0.059 Sum_probs=83.0
Q ss_pred HHHHHHHhhCCCCCCCCcEEEeCCCccHHHHHHHhcCC---------------------------------------CeE
Q 038343 8 LLLSEFILSFPEIFSNKSCFEVGSGVGLVGICLAHVKA---------------------------------------SKV 48 (191)
Q Consensus 8 ~~L~~~l~~~~~~~~~~~VLElG~GtG~~~~~la~~g~---------------------------------------~~v 48 (191)
..|+..+.......++..|||.+||+|.+.+.++..+. .+|
T Consensus 181 e~lAa~ll~~~~~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V 260 (385)
T 3ldu_A 181 ETLAAGLIYLTPWKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKI 260 (385)
T ss_dssp HHHHHHHHHTSCCCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCE
T ss_pred HHHHHHHHHhhCCCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceE
Confidence 34666666665555788999999999999887776532 269
Q ss_pred EEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCCCCCCCCCEEEEcccccCC-----CChHH
Q 038343 49 TLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESGLSAFVPEIILGADILYDR-----SCFPD 123 (191)
Q Consensus 49 ~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~~~~~~fDvIi~~d~ly~~-----~~~~~ 123 (191)
+++|+++.+++.++.|+..+++. ..+.+...|+.+... ..+||+|+++.. |.. .....
T Consensus 261 ~GvDid~~ai~~Ar~Na~~~gl~------------~~i~~~~~D~~~l~~----~~~~D~Iv~NPP-yg~rl~~~~~l~~ 323 (385)
T 3ldu_A 261 YGYDIDEESIDIARENAEIAGVD------------EYIEFNVGDATQFKS----EDEFGFIITNPP-YGERLEDKDSVKQ 323 (385)
T ss_dssp EEEESCHHHHHHHHHHHHHHTCG------------GGEEEEECCGGGCCC----SCBSCEEEECCC-CCCSHHHHHHHHH
T ss_pred EEEECCHHHHHHHHHHHHHcCCC------------CceEEEECChhhcCc----CCCCcEEEECCC-CcCccCCHHHHHH
Confidence 99999999999999999999865 357788887765432 247999998655 432 33556
Q ss_pred HHHHHHHHhccC
Q 038343 124 LVRILAILLNRR 135 (191)
Q Consensus 124 ll~~l~~ll~~~ 135 (191)
+.+.+.+.|++-
T Consensus 324 ly~~lg~~lk~~ 335 (385)
T 3ldu_A 324 LYKELGYAFRKL 335 (385)
T ss_dssp HHHHHHHHHHTS
T ss_pred HHHHHHHHHhhC
Confidence 777777888873
|
| >1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A | Back alignment and structure |
|---|
Probab=99.06 E-value=6.6e-10 Score=92.31 Aligned_cols=102 Identities=12% Similarity=0.061 Sum_probs=74.3
Q ss_pred CCCCcEEEeCCCccHHHHHHHhcCC-CeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcC
Q 038343 21 FSNKSCFEVGSGVGLVGICLAHVKA-SKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASES 99 (191)
Q Consensus 21 ~~~~~VLElG~GtG~~~~~la~~g~-~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~ 99 (191)
.++.+|||+|||+|..+..++..+. .+|+++|+++.+++.+++|++.++.. +.+...|..+...
T Consensus 245 ~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~~--------------~~~~~~D~~~~~~- 309 (429)
T 1sqg_A 245 QNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMK--------------ATVKQGDGRYPSQ- 309 (429)
T ss_dssp CTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCC--------------CEEEECCTTCTHH-
T ss_pred CCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCCC--------------eEEEeCchhhchh-
Confidence 3677999999999999988777643 59999999999999999999988743 4556666554321
Q ss_pred CCCCCCCCEEEE------cccccCCCCh----------------HHHHHHHHHHhccCCC
Q 038343 100 GLSAFVPEIILG------ADILYDRSCF----------------PDLVRILAILLNRRKS 137 (191)
Q Consensus 100 ~~~~~~fDvIi~------~d~ly~~~~~----------------~~ll~~l~~ll~~~g~ 137 (191)
.+..++||+|++ ..++...++. ..+++.+.++|+|||.
T Consensus 310 ~~~~~~fD~Vl~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~ 369 (429)
T 1sqg_A 310 WCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGT 369 (429)
T ss_dssp HHTTCCEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEE
T ss_pred hcccCCCCEEEEeCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCE
Confidence 123357999996 2233333322 4778888999999973
|
| >3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} | Back alignment and structure |
|---|
Probab=99.06 E-value=3.1e-10 Score=94.75 Aligned_cols=112 Identities=8% Similarity=-0.031 Sum_probs=75.9
Q ss_pred cHHHHHHHHhhCCCCCCCCcEEEeCCCccHHHHHHHhc--CCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCC
Q 038343 6 SSLLLSEFILSFPEIFSNKSCFEVGSGVGLVGICLAHV--KASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDP 83 (191)
Q Consensus 6 ~a~~L~~~l~~~~~~~~~~~VLElG~GtG~~~~~la~~--g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~ 83 (191)
++..++..+. ..++.+|||+|||+|..++.++.. +..+|+++|+++.+++.+++|++.++..
T Consensus 93 ss~l~~~~L~----~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~------------ 156 (456)
T 3m4x_A 93 SAMIVGTAAA----AKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVS------------ 156 (456)
T ss_dssp TTHHHHHHHC----CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCS------------
T ss_pred HHHHHHHHcC----CCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC------------
Confidence 3455555543 236779999999999988877764 2358999999999999999999998864
Q ss_pred CeeEEEeecCCCCCcCCCCCCCCCEEEEccc------ccCC---------CC-------hHHHHHHHHHHhccCC
Q 038343 84 NVVQCVHLPWESASESGLSAFVPEIILGADI------LYDR---------SC-------FPDLVRILAILLNRRK 136 (191)
Q Consensus 84 ~~i~~~~ldw~~~~~~~~~~~~fDvIi~~d~------ly~~---------~~-------~~~ll~~l~~ll~~~g 136 (191)
++.+...|..+... ...++||+|++.-. +-.. .. ...+++.+.++|+|||
T Consensus 157 -nv~v~~~Da~~l~~--~~~~~FD~Il~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG 228 (456)
T 3m4x_A 157 -NAIVTNHAPAELVP--HFSGFFDRIVVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKG 228 (456)
T ss_dssp -SEEEECCCHHHHHH--HHTTCEEEEEEECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEE
T ss_pred -ceEEEeCCHHHhhh--hccccCCEEEECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 35555554322110 11357999997221 1111 11 1267888889999996
|
| >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A | Back alignment and structure |
|---|
Probab=99.05 E-value=2e-10 Score=92.49 Aligned_cols=107 Identities=11% Similarity=-0.003 Sum_probs=75.8
Q ss_pred CCCcEEEeCCCccHHHHHHHhcC-CCeEEEEcCChHHHHHHHHHHHHh--cCCCCcccccccCCCCeeEEEeecCCCCCc
Q 038343 22 SNKSCFEVGSGVGLVGICLAHVK-ASKVTLTDGDHLTLANMRSNLELN--QLSTDTSLLESYEDPNVVQCVHLPWESASE 98 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~g-~~~v~~tD~~~~~l~~~~~n~~~n--~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~ 98 (191)
+.++|||||||+|..+..+++.. ..+|+++|+++.+++.+++++... +.. ..++.+...|+.+...
T Consensus 120 ~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~-----------~~rv~~~~~D~~~~l~ 188 (334)
T 1xj5_A 120 NPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYE-----------DPRVNLVIGDGVAFLK 188 (334)
T ss_dssp CCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGG-----------STTEEEEESCHHHHHH
T ss_pred CCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccC-----------CCcEEEEECCHHHHHH
Confidence 45799999999999999888763 459999999999999999988653 221 0357777777543211
Q ss_pred CCCCCCCCCEEEEccc--ccCCCC--hHHHHHHHHHHhccCCCCcc
Q 038343 99 SGLSAFVPEIILGADI--LYDRSC--FPDLVRILAILLNRRKSVSS 140 (191)
Q Consensus 99 ~~~~~~~fDvIi~~d~--ly~~~~--~~~ll~~l~~ll~~~g~~~~ 140 (191)
....++||+|++.-. +..... ...+++.++++|+|+|....
T Consensus 189 -~~~~~~fDlIi~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~ 233 (334)
T 1xj5_A 189 -NAAEGSYDAVIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCT 233 (334)
T ss_dssp -TSCTTCEEEEEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEE
T ss_pred -hccCCCccEEEECCCCccCcchhhhHHHHHHHHHHhcCCCcEEEE
Confidence 112357999998321 221111 47899999999999985443
|
| >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.04 E-value=1.1e-09 Score=81.19 Aligned_cols=111 Identities=14% Similarity=0.050 Sum_probs=73.3
Q ss_pred cHHHHHHHHhhCCCCCCCCcEEEeCCCccHHHHHHHhc-C--CCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCC
Q 038343 6 SSLLLSEFILSFPEIFSNKSCFEVGSGVGLVGICLAHV-K--ASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYED 82 (191)
Q Consensus 6 ~a~~L~~~l~~~~~~~~~~~VLElG~GtG~~~~~la~~-g--~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~ 82 (191)
++..|.+.+.......++.+|||||||+|..+..+++. + ..+|+++|+++.. ..
T Consensus 6 ~~~kl~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~-----------~~------------ 62 (201)
T 2plw_A 6 AAYKLIELDNKYLFLKKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD-----------PI------------ 62 (201)
T ss_dssp THHHHHHHHHHHCCCCTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC-----------CC------------
T ss_pred HHHHHHHHHHHcCCCCCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC-----------CC------------
Confidence 56677776655443446779999999999999988765 3 2589999998721 00
Q ss_pred CCeeEEEeecCCCCCc----------------------CCCCCCCCCEEEEcccccCCCC----h-------HHHHHHHH
Q 038343 83 PNVVQCVHLPWESASE----------------------SGLSAFVPEIILGADILYDRSC----F-------PDLVRILA 129 (191)
Q Consensus 83 ~~~i~~~~ldw~~~~~----------------------~~~~~~~fDvIi~~d~ly~~~~----~-------~~ll~~l~ 129 (191)
.++.+...|+.+... ..+...+||+|++...++.... . ..+++.+.
T Consensus 63 -~~v~~~~~d~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~ 141 (201)
T 2plw_A 63 -PNVYFIQGEIGKDNMNNIKNINYIDNMNNNSVDYKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFME 141 (201)
T ss_dssp -TTCEEEECCTTTTSSCCC-----------CHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHH
T ss_pred -CCceEEEccccchhhhhhccccccccccchhhHHHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHH
Confidence 135556666654320 0023468999998665554321 1 23788899
Q ss_pred HHhccCCCCcc
Q 038343 130 ILLNRRKSVSS 140 (191)
Q Consensus 130 ~ll~~~g~~~~ 140 (191)
++|+|||....
T Consensus 142 ~~LkpgG~lv~ 152 (201)
T 2plw_A 142 QYINIGGTYIV 152 (201)
T ss_dssp HHEEEEEEEEE
T ss_pred HHccCCCEEEE
Confidence 99999986543
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 | Back alignment and structure |
|---|
Probab=99.03 E-value=2.7e-10 Score=88.45 Aligned_cols=93 Identities=12% Similarity=0.056 Sum_probs=69.1
Q ss_pred CCCcEEEeCCCccHHHHHHHhc-CCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCC
Q 038343 22 SNKSCFEVGSGVGLVGICLAHV-KASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESG 100 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~-g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~ 100 (191)
++.+|||+|||+|..+..+++. +..+|+++|+++.+++.++++. .++.+...|+.+..
T Consensus 85 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~------------------~~~~~~~~d~~~~~--- 143 (269)
T 1p91_A 85 KATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY------------------PQVTFCVASSHRLP--- 143 (269)
T ss_dssp TCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC------------------TTSEEEECCTTSCS---
T ss_pred CCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhC------------------CCcEEEEcchhhCC---
Confidence 5779999999999888877775 2348999999999999887653 12455666665432
Q ss_pred CCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCcccc
Q 038343 101 LSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVSSSR 142 (191)
Q Consensus 101 ~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~~~~ 142 (191)
+.+++||+|++..+. ..++.+.++|+|+|......
T Consensus 144 ~~~~~fD~v~~~~~~-------~~l~~~~~~L~pgG~l~~~~ 178 (269)
T 1p91_A 144 FSDTSMDAIIRIYAP-------CKAEELARVVKPGGWVITAT 178 (269)
T ss_dssp BCTTCEEEEEEESCC-------CCHHHHHHHEEEEEEEEEEE
T ss_pred CCCCceeEEEEeCCh-------hhHHHHHHhcCCCcEEEEEE
Confidence 345689999986552 25789999999998665443
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=9.4e-11 Score=89.32 Aligned_cols=101 Identities=17% Similarity=0.021 Sum_probs=67.0
Q ss_pred CCCcEEEeCCCccHHHHHHHhcC-CCeEEEEcCC-hHHHHHH---HHHHHHhcCCCCcccccccCCCCeeEEEeecCCCC
Q 038343 22 SNKSCFEVGSGVGLVGICLAHVK-ASKVTLTDGD-HLTLANM---RSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESA 96 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~g-~~~v~~tD~~-~~~l~~~---~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~ 96 (191)
++.+|||||||+|..+..+++.. ..+|+++|++ +.+++.+ ++++..++. .++.+...+..+.
T Consensus 24 ~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~-------------~~v~~~~~d~~~l 90 (225)
T 3p2e_A 24 FDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGL-------------SNVVFVIAAAESL 90 (225)
T ss_dssp CSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCC-------------SSEEEECCBTTBC
T ss_pred CCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCC-------------CCeEEEEcCHHHh
Confidence 56689999999999999888432 3389999999 6666665 655554443 2467777776654
Q ss_pred CcCCCCCCCCCEEEEcccccCC--------CChHHHHHHHHHHhccCCCCcc
Q 038343 97 SESGLSAFVPEIILGADILYDR--------SCFPDLVRILAILLNRRKSVSS 140 (191)
Q Consensus 97 ~~~~~~~~~fDvIi~~d~ly~~--------~~~~~ll~~l~~ll~~~g~~~~ 140 (191)
+. ..+|+|.+..+.+.. .....+++.++++|||||....
T Consensus 91 ~~-----~~~d~v~~i~~~~~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i 137 (225)
T 3p2e_A 91 PF-----ELKNIADSISILFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEF 137 (225)
T ss_dssp CG-----GGTTCEEEEEEESCCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEE
T ss_pred hh-----hccCeEEEEEEeCCCcHHhhhhhcchHHHHHHHHHhcCCCcEEEE
Confidence 21 123544443333211 1245689999999999986554
|
| >2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=2.2e-10 Score=91.09 Aligned_cols=104 Identities=11% Similarity=-0.022 Sum_probs=72.3
Q ss_pred CCCcEEEeCCCccHHHHHHHhcC-CCeEEEEcCChHHHHHHHHHHHH--hcCCCCcccccccCCCCeeEEEeecCCCCCc
Q 038343 22 SNKSCFEVGSGVGLVGICLAHVK-ASKVTLTDGDHLTLANMRSNLEL--NQLSTDTSLLESYEDPNVVQCVHLPWESASE 98 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~g-~~~v~~tD~~~~~l~~~~~n~~~--n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~ 98 (191)
++++|||||||+|..+..+++.+ ..+|+++|+++.+++.+++++.. ++.. ..++++...|..+...
T Consensus 95 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~-----------~~rv~v~~~Da~~~l~ 163 (304)
T 2o07_A 95 NPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYS-----------SSKLTLHVGDGFEFMK 163 (304)
T ss_dssp SCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGG-----------CTTEEEEESCHHHHHH
T ss_pred CCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccC-----------CCcEEEEECcHHHHHh
Confidence 45799999999999999888774 45999999999999999998765 2221 0356666665322111
Q ss_pred CCCCCCCCCEEEEcccccCCC-----ChHHHHHHHHHHhccCCCCc
Q 038343 99 SGLSAFVPEIILGADILYDRS-----CFPDLVRILAILLNRRKSVS 139 (191)
Q Consensus 99 ~~~~~~~fDvIi~~d~ly~~~-----~~~~ll~~l~~ll~~~g~~~ 139 (191)
...++||+|++ |...... ....+++.++++|+|+|...
T Consensus 164 --~~~~~fD~Ii~-d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv 206 (304)
T 2o07_A 164 --QNQDAFDVIIT-DSSDPMGPAESLFKESYYQLMKTALKEDGVLC 206 (304)
T ss_dssp --TCSSCEEEEEE-ECC-----------CHHHHHHHHHEEEEEEEE
T ss_pred --hCCCCceEEEE-CCCCCCCcchhhhHHHHHHHHHhccCCCeEEE
Confidence 12357999998 3332111 23568999999999998544
|
| >3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.02 E-value=2.4e-10 Score=94.12 Aligned_cols=108 Identities=16% Similarity=0.100 Sum_probs=74.7
Q ss_pred CCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHh--cCCCCcccccccCCCCeeEEEeecCCCCCcCC
Q 038343 23 NKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELN--QLSTDTSLLESYEDPNVVQCVHLPWESASESG 100 (191)
Q Consensus 23 ~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n--~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~ 100 (191)
+.+|||+|||+|..++.+++.+. +|+++|+++.+++.+++|++.+ +. .++.+...|..+....
T Consensus 94 g~~VLDLgcG~G~~al~LA~~g~-~V~~VD~s~~~l~~Ar~N~~~~~~gl-------------~~i~~i~~Da~~~L~~- 158 (410)
T 3ll7_A 94 GTKVVDLTGGLGIDFIALMSKAS-QGIYIERNDETAVAARHNIPLLLNEG-------------KDVNILTGDFKEYLPL- 158 (410)
T ss_dssp TCEEEESSCSSSHHHHHHHTTCS-EEEEEESCHHHHHHHHHHHHHHSCTT-------------CEEEEEESCGGGSHHH-
T ss_pred CCEEEEeCCCchHHHHHHHhcCC-EEEEEECCHHHHHHHHHhHHHhccCC-------------CcEEEEECcHHHhhhh-
Confidence 78999999999999999998876 9999999999999999999987 54 2577888776543111
Q ss_pred CCCCCCCEEEEcc--------cccCCCChHHHHHHHHHHhccCCCCccccccC
Q 038343 101 LSAFVPEIILGAD--------ILYDRSCFPDLVRILAILLNRRKSVSSSRKES 145 (191)
Q Consensus 101 ~~~~~fDvIi~~d--------~ly~~~~~~~ll~~l~~ll~~~g~~~~~~~~~ 145 (191)
....+||+|++.. -+|..++..+-+..+...|...+....+-.+|
T Consensus 159 ~~~~~fDvV~lDPPrr~~~~grv~~led~~P~l~~~~~~l~~~~~~~~vK~sP 211 (410)
T 3ll7_A 159 IKTFHPDYIYVDPARRSGADKRVYAIADCEPDLIPLATELLPFCSSILAKLSP 211 (410)
T ss_dssp HHHHCCSEEEECCEEC-----CCCCGGGEESCHHHHHHHHGGGSSEEEEEECT
T ss_pred ccCCCceEEEECCCCcCCCCceEEehhhcCCCHHHHHHHHHhhCCcEEEEcCC
Confidence 1124799999832 23333334445556666554444433333333
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.02 E-value=1e-09 Score=81.00 Aligned_cols=111 Identities=14% Similarity=0.048 Sum_probs=71.1
Q ss_pred cHHHHHHHHhhCCCCCCCCcEEEeCCCccHHHHHHHhc-CC---------CeEEEEcCChHHHHHHHHHHHHhcCCCCcc
Q 038343 6 SSLLLSEFILSFPEIFSNKSCFEVGSGVGLVGICLAHV-KA---------SKVTLTDGDHLTLANMRSNLELNQLSTDTS 75 (191)
Q Consensus 6 ~a~~L~~~l~~~~~~~~~~~VLElG~GtG~~~~~la~~-g~---------~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~ 75 (191)
++..|.+.........++.+|||+|||+|..++.+++. +. .+|+++|+++.. ..
T Consensus 6 ~~~kl~~l~~~~~~~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~-----------~~----- 69 (196)
T 2nyu_A 6 SAFKLLEVNERHQILRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF-----------PL----- 69 (196)
T ss_dssp HHHHHHHHHHHHCCCCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC-----------CC-----
T ss_pred HHHHHHHHHHhcCCCCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc-----------cC-----
Confidence 34556665554444456789999999999999988775 53 589999998731 11
Q ss_pred cccccCCCCeeEEE-eecCCCCCc-----CCCCCCCCCEEEEcccccCCCC----h-------HHHHHHHHHHhccCCCC
Q 038343 76 LLESYEDPNVVQCV-HLPWESASE-----SGLSAFVPEIILGADILYDRSC----F-------PDLVRILAILLNRRKSV 138 (191)
Q Consensus 76 ~~~~~~~~~~i~~~-~ldw~~~~~-----~~~~~~~fDvIi~~d~ly~~~~----~-------~~ll~~l~~ll~~~g~~ 138 (191)
.++.+. ..|+..... ..+.+.+||+|++.-.++.... . ..+++.+.++|+|+|..
T Consensus 70 --------~~~~~~~~~d~~~~~~~~~~~~~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l 141 (196)
T 2nyu_A 70 --------EGATFLCPADVTDPRTSQRILEVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTF 141 (196)
T ss_dssp --------TTCEEECSCCTTSHHHHHHHHHHSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEE
T ss_pred --------CCCeEEEeccCCCHHHHHHHHHhcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEE
Confidence 124455 555433210 0022347999998654433221 1 47899999999999864
Q ss_pred cc
Q 038343 139 SS 140 (191)
Q Consensus 139 ~~ 140 (191)
..
T Consensus 142 v~ 143 (196)
T 2nyu_A 142 LC 143 (196)
T ss_dssp EE
T ss_pred EE
Confidence 43
|
| >2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=1.1e-10 Score=91.60 Aligned_cols=119 Identities=8% Similarity=-0.011 Sum_probs=72.8
Q ss_pred HHHHHHHHhhCCCCCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCee
Q 038343 7 SLLLSEFILSFPEIFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVV 86 (191)
Q Consensus 7 a~~L~~~l~~~~~~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i 86 (191)
+..|.+.+.. ....++.+|||||||+|..+..+++. .+|+++|+++ ++..+++ +..... ....++
T Consensus 68 a~KL~~i~~~-~~~~~g~~VLDlGcGtG~~s~~la~~--~~V~gVD~s~-m~~~a~~----~~~~~~-------~~~~~v 132 (276)
T 2wa2_A 68 TAKLAWIDER-GGVELKGTVVDLGCGRGSWSYYAASQ--PNVREVKAYT-LGTSGHE----KPRLVE-------TFGWNL 132 (276)
T ss_dssp HHHHHHHHHT-TSCCCCEEEEEESCTTCHHHHHHHTS--TTEEEEEEEC-CCCTTSC----CCCCCC-------CTTGGG
T ss_pred HHHHHHHHHc-CCCCCCCEEEEeccCCCHHHHHHHHc--CCEEEEECch-hhhhhhh----chhhhh-------hcCCCe
Confidence 4556555544 33346789999999999999998888 4899999987 4322111 110000 000145
Q ss_pred EEE--eecCCCCCcCCCCCCCCCEEEEcccccCCCCh----H---HHHHHHHHHhccCC--CCccccccCC
Q 038343 87 QCV--HLPWESASESGLSAFVPEIILGADILYDRSCF----P---DLVRILAILLNRRK--SVSSSRKESS 146 (191)
Q Consensus 87 ~~~--~ldw~~~~~~~~~~~~fDvIi~~d~ly~~~~~----~---~ll~~l~~ll~~~g--~~~~~~~~~~ 146 (191)
.+. ..|..+ +++.+||+|++.-. +..... . .+++.+.++|+||| ...+..++|.
T Consensus 133 ~~~~~~~D~~~-----l~~~~fD~Vvsd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~~~~~ 197 (276)
T 2wa2_A 133 ITFKSKVDVTK-----MEPFQADTVLCDIG-ESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVKVLNPY 197 (276)
T ss_dssp EEEECSCCGGG-----CCCCCCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEESCCC
T ss_pred EEEeccCcHhh-----CCCCCcCEEEECCC-cCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEEeCCCC
Confidence 555 555443 23468999998544 332221 1 36888999999999 5555444443
|
| >2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=4e-10 Score=86.41 Aligned_cols=97 Identities=10% Similarity=-0.010 Sum_probs=69.4
Q ss_pred CCCcEEEeCCCccHHHHHHHhc----C-CCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCC
Q 038343 22 SNKSCFEVGSGVGLVGICLAHV----K-ASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESA 96 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~----g-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~ 96 (191)
++.+|||||||+|..++.+++. + ..+|+++|+++.+++.++ +.. .++.+...|+.+.
T Consensus 81 ~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~------~~~------------~~v~~~~gD~~~~ 142 (236)
T 2bm8_A 81 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPA------SDM------------ENITLHQGDCSDL 142 (236)
T ss_dssp CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCG------GGC------------TTEEEEECCSSCS
T ss_pred CCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHh------ccC------------CceEEEECcchhH
Confidence 4569999999999999988875 2 349999999999887665 111 3577888887653
Q ss_pred Cc-CCCCCCCCCEEEEcccccCCCChHHHHHHHHH-HhccCCCCc
Q 038343 97 SE-SGLSAFVPEIILGADILYDRSCFPDLVRILAI-LLNRRKSVS 139 (191)
Q Consensus 97 ~~-~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~-ll~~~g~~~ 139 (191)
.. ......+||+|++... + .....+++.+.+ +|+|||...
T Consensus 143 ~~l~~~~~~~fD~I~~d~~-~--~~~~~~l~~~~r~~LkpGG~lv 184 (236)
T 2bm8_A 143 TTFEHLREMAHPLIFIDNA-H--ANTFNIMKWAVDHLLEEGDYFI 184 (236)
T ss_dssp GGGGGGSSSCSSEEEEESS-C--SSHHHHHHHHHHHTCCTTCEEE
T ss_pred HHHHhhccCCCCEEEECCc-h--HhHHHHHHHHHHhhCCCCCEEE
Confidence 10 1112237999987443 2 367888999997 999998543
|
| >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.01 E-value=3.3e-09 Score=78.71 Aligned_cols=112 Identities=12% Similarity=0.077 Sum_probs=75.4
Q ss_pred cHHHHHHHHhhCCCCCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCe
Q 038343 6 SSLLLSEFILSFPEIFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNV 85 (191)
Q Consensus 6 ~a~~L~~~l~~~~~~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~ 85 (191)
++..|.+.+.+.....++.+|||||||+|..+..+++.+. +|+++|+++.. .. .+
T Consensus 9 a~~KL~ei~~~~~~~~~g~~VLDlG~G~G~~s~~la~~~~-~V~gvD~~~~~-----------~~-------------~~ 63 (191)
T 3dou_A 9 AAFKLEFLLDRYRVVRKGDAVIEIGSSPGGWTQVLNSLAR-KIISIDLQEME-----------EI-------------AG 63 (191)
T ss_dssp HHHHHHHHHHHHCCSCTTCEEEEESCTTCHHHHHHTTTCS-EEEEEESSCCC-----------CC-------------TT
T ss_pred HHHHHHHHHHHcCCCCCCCEEEEEeecCCHHHHHHHHcCC-cEEEEeccccc-----------cC-------------CC
Confidence 5677777776654445788999999999999999998854 99999998631 11 24
Q ss_pred eEEEeecCCCCCcCC-----CC---CCCCCEEEEcccccCCC-----------ChHHHHHHHHHHhccCCCCcccc
Q 038343 86 VQCVHLPWESASESG-----LS---AFVPEIILGADILYDRS-----------CFPDLVRILAILLNRRKSVSSSR 142 (191)
Q Consensus 86 i~~~~ldw~~~~~~~-----~~---~~~fDvIi~~d~ly~~~-----------~~~~ll~~l~~ll~~~g~~~~~~ 142 (191)
+.+...|..+..... +. .++||+|++.-...... ..+.+++...++|+|||...+..
T Consensus 64 v~~~~~D~~~~~~~~~~~~~~~~~~~~~~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~ 139 (191)
T 3dou_A 64 VRFIRCDIFKETIFDDIDRALREEGIEKVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQ 139 (191)
T ss_dssp CEEEECCTTSSSHHHHHHHHHHHHTCSSEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred eEEEEccccCHHHHHHHHHHhhcccCCcceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEE
Confidence 677788776542100 11 13899999843221111 13567888899999998765433
|
| >3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.00 E-value=2.9e-09 Score=87.50 Aligned_cols=110 Identities=13% Similarity=0.158 Sum_probs=80.2
Q ss_pred HHHHHHhhCCCCCCCCcEEEeCCCccHHHHHHHhcCC---------------------------------------CeEE
Q 038343 9 LLSEFILSFPEIFSNKSCFEVGSGVGLVGICLAHVKA---------------------------------------SKVT 49 (191)
Q Consensus 9 ~L~~~l~~~~~~~~~~~VLElG~GtG~~~~~la~~g~---------------------------------------~~v~ 49 (191)
.|+..+.......++..|||.+||+|.+.+.++..+. .+|+
T Consensus 188 ~lAa~ll~l~~~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~ 267 (393)
T 3k0b_A 188 TMAAALVLLTSWHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNII 267 (393)
T ss_dssp HHHHHHHHHSCCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEE
T ss_pred HHHHHHHHHhCCCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEE
Confidence 4555554444445678999999999999887776533 2599
Q ss_pred EEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCCCCCCCCCEEEEcccccCC-----CChHHH
Q 038343 50 LTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESGLSAFVPEIILGADILYDR-----SCFPDL 124 (191)
Q Consensus 50 ~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~~~~~~fDvIi~~d~ly~~-----~~~~~l 124 (191)
++|+++.+++.++.|+..+++. ..+.+...|+.+... ..+||+|+++.. |.. .....+
T Consensus 268 GvDid~~al~~Ar~Na~~~gl~------------~~I~~~~~D~~~~~~----~~~fD~Iv~NPP-Yg~rl~~~~~l~~l 330 (393)
T 3k0b_A 268 GGDIDARLIEIAKQNAVEAGLG------------DLITFRQLQVADFQT----EDEYGVVVANPP-YGERLEDEEAVRQL 330 (393)
T ss_dssp EEESCHHHHHHHHHHHHHTTCT------------TCSEEEECCGGGCCC----CCCSCEEEECCC-CCCSHHHHHHHHHH
T ss_pred EEECCHHHHHHHHHHHHHcCCC------------CceEEEECChHhCCC----CCCCCEEEECCC-CccccCCchhHHHH
Confidence 9999999999999999999865 357778877765432 247999998654 432 235566
Q ss_pred HHHHHHHhccC
Q 038343 125 VRILAILLNRR 135 (191)
Q Consensus 125 l~~l~~ll~~~ 135 (191)
.+.+.+.|++-
T Consensus 331 y~~lg~~lk~~ 341 (393)
T 3k0b_A 331 YREMGIVYKRM 341 (393)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHHHhcC
Confidence 77777888873
|
| >4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=4.3e-09 Score=85.26 Aligned_cols=102 Identities=10% Similarity=0.050 Sum_probs=77.7
Q ss_pred CCCCCcEEEeCCCccHHHHHHHhcCC-CeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCc
Q 038343 20 IFSNKSCFEVGSGVGLVGICLAHVKA-SKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASE 98 (191)
Q Consensus 20 ~~~~~~VLElG~GtG~~~~~la~~g~-~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~ 98 (191)
.-+..+|||+|||+|..++.+++..+ .+++..|. |.+++.+++++..... .++++...|+.+..
T Consensus 177 ~~~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dl-p~v~~~a~~~~~~~~~-------------~rv~~~~gD~~~~~- 241 (353)
T 4a6d_A 177 LSVFPLMCDLGGGAGALAKECMSLYPGCKITVFDI-PEVVWTAKQHFSFQEE-------------EQIDFQEGDFFKDP- 241 (353)
T ss_dssp GGGCSEEEEETCTTSHHHHHHHHHCSSCEEEEEEC-HHHHHHHHHHSCC--C-------------CSEEEEESCTTTSC-
T ss_pred cccCCeEEeeCCCCCHHHHHHHHhCCCceeEeccC-HHHHHHHHHhhhhccc-------------CceeeecCccccCC-
Confidence 33556999999999999987776544 37889998 8899988877643321 47889998875432
Q ss_pred CCCCCCCCCEEEEcccccCCCCh--HHHHHHHHHHhccCCCCcc
Q 038343 99 SGLSAFVPEIILGADILYDRSCF--PDLVRILAILLNRRKSVSS 140 (191)
Q Consensus 99 ~~~~~~~fDvIi~~d~ly~~~~~--~~ll~~l~~ll~~~g~~~~ 140 (191)
...+|+|++..++|+.++. ..+|+.+++.|+|+|+..+
T Consensus 242 ----~~~~D~~~~~~vlh~~~d~~~~~iL~~~~~al~pgg~lli 281 (353)
T 4a6d_A 242 ----LPEADLYILARVLHDWADGKCSHLLERIYHTCKPGGGILV 281 (353)
T ss_dssp ----CCCCSEEEEESSGGGSCHHHHHHHHHHHHHHCCTTCEEEE
T ss_pred ----CCCceEEEeeeecccCCHHHHHHHHHHHHhhCCCCCEEEE
Confidence 2358999999999987654 5779999999999986543
|
| >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=98.99 E-value=5.2e-10 Score=89.16 Aligned_cols=99 Identities=12% Similarity=0.054 Sum_probs=70.4
Q ss_pred CcEEEeCCCccHHHHHHHh-cCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCCCC
Q 038343 24 KSCFEVGSGVGLVGICLAH-VKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESGLS 102 (191)
Q Consensus 24 ~~VLElG~GtG~~~~~la~-~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~~~ 102 (191)
.+|||||||+|.++..+++ ....+|+++|+++.+++.+++++..+. ..++++...|..+... ...
T Consensus 91 ~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~-------------~~rv~v~~~Da~~~l~-~~~ 156 (317)
T 3gjy_A 91 LRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPR-------------APRVKIRVDDARMVAE-SFT 156 (317)
T ss_dssp CEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCC-------------TTTEEEEESCHHHHHH-TCC
T ss_pred CEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccC-------------CCceEEEECcHHHHHh-hcc
Confidence 4899999999999998887 433489999999999999998865431 1356776666432211 123
Q ss_pred CCCCCEEEEcccccC---CCC--hHHHHHHHHHHhccCCC
Q 038343 103 AFVPEIILGADILYD---RSC--FPDLVRILAILLNRRKS 137 (191)
Q Consensus 103 ~~~fDvIi~~d~ly~---~~~--~~~ll~~l~~ll~~~g~ 137 (191)
.++||+|++ |.... +.. ...+++.++++|+|+|.
T Consensus 157 ~~~fDvIi~-D~~~~~~~~~~L~t~efl~~~~r~LkpgGv 195 (317)
T 3gjy_A 157 PASRDVIIR-DVFAGAITPQNFTTVEFFEHCHRGLAPGGL 195 (317)
T ss_dssp TTCEEEEEE-CCSTTSCCCGGGSBHHHHHHHHHHEEEEEE
T ss_pred CCCCCEEEE-CCCCccccchhhhHHHHHHHHHHhcCCCcE
Confidence 468999997 33222 111 37889999999999974
|
| >2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=98.99 E-value=1.1e-10 Score=90.70 Aligned_cols=80 Identities=14% Similarity=0.109 Sum_probs=61.3
Q ss_pred CCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCCh-------HHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCC
Q 038343 22 SNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDH-------LTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWE 94 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~-------~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~ 94 (191)
++.+|||+|||+|..++.+++.|. +|+++|+++ .+++.+++|++.|++. +++.+...|..
T Consensus 83 ~~~~VLDlgcG~G~~a~~lA~~g~-~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~------------~ri~~~~~d~~ 149 (258)
T 2r6z_A 83 AHPTVWDATAGLGRDSFVLASLGL-TVTAFEQHPAVACLLSDGIRRALLNPETQDTA------------ARINLHFGNAA 149 (258)
T ss_dssp GCCCEEETTCTTCHHHHHHHHTTC-CEEEEECCHHHHHHHHHHHHHHHHSHHHHHHH------------TTEEEEESCHH
T ss_pred CcCeEEEeeCccCHHHHHHHHhCC-EEEEEECChhhhHHHHHHHHHHHhHHHhhCCc------------cCeEEEECCHH
Confidence 567999999999999999999876 899999999 9999999999888754 34777777654
Q ss_pred CCCcCCCCC--CCCCEEEEcccc
Q 038343 95 SASESGLSA--FVPEIILGADIL 115 (191)
Q Consensus 95 ~~~~~~~~~--~~fDvIi~~d~l 115 (191)
+... .+.+ .+||+|++..++
T Consensus 150 ~~l~-~~~~~~~~fD~V~~dP~~ 171 (258)
T 2r6z_A 150 EQMP-ALVKTQGKPDIVYLDPMY 171 (258)
T ss_dssp HHHH-HHHHHHCCCSEEEECCCC
T ss_pred HHHH-hhhccCCCccEEEECCCC
Confidence 3211 1122 479999985443
|
| >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=98.99 E-value=2.6e-10 Score=91.08 Aligned_cols=105 Identities=16% Similarity=0.082 Sum_probs=71.2
Q ss_pred CCCcEEEeCCCccHHHHHHHhcC-CCeEEEEcCChHHHHHHHHHHHHh--cCCCCcccccccCCCCeeEEEeecCCCCCc
Q 038343 22 SNKSCFEVGSGVGLVGICLAHVK-ASKVTLTDGDHLTLANMRSNLELN--QLSTDTSLLESYEDPNVVQCVHLPWESASE 98 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~g-~~~v~~tD~~~~~l~~~~~n~~~n--~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~ 98 (191)
+.++|||||||+|..+..+++.. ..+|+++|+++.+++.+++++... +.. ..++.+...|..+...
T Consensus 108 ~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~-----------~~rv~~~~~D~~~~l~ 176 (314)
T 2b2c_A 108 DPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFS-----------HPKLDLFCGDGFEFLK 176 (314)
T ss_dssp SCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGG-----------CTTEEEECSCHHHHHH
T ss_pred CCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccC-----------CCCEEEEEChHHHHHH
Confidence 45699999999999999888763 459999999999999999987543 211 1356777666432211
Q ss_pred CCCCCCCCCEEEEcccccC---CCC-h-HHHHHHHHHHhccCCCCcc
Q 038343 99 SGLSAFVPEIILGADILYD---RSC-F-PDLVRILAILLNRRKSVSS 140 (191)
Q Consensus 99 ~~~~~~~fDvIi~~d~ly~---~~~-~-~~ll~~l~~ll~~~g~~~~ 140 (191)
. ..++||+|++ |.... ... . ..+++.++++|+|+|....
T Consensus 177 ~--~~~~fD~Ii~-d~~~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~ 220 (314)
T 2b2c_A 177 N--HKNEFDVIIT-DSSDPVGPAESLFGQSYYELLRDALKEDGILSS 220 (314)
T ss_dssp H--CTTCEEEEEE-CCC-------------HHHHHHHHEEEEEEEEE
T ss_pred h--cCCCceEEEE-cCCCCCCcchhhhHHHHHHHHHhhcCCCeEEEE
Confidence 1 2357999997 33221 111 1 6889999999999985443
|
| >2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus} | Back alignment and structure |
|---|
Probab=98.99 E-value=3.5e-10 Score=88.26 Aligned_cols=119 Identities=8% Similarity=-0.056 Sum_probs=73.1
Q ss_pred cHHHHHHHHhhCCCCCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCe
Q 038343 6 SSLLLSEFILSFPEIFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNV 85 (191)
Q Consensus 6 ~a~~L~~~l~~~~~~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~ 85 (191)
++..|.+.+.. ....++.+|||||||+|..+..+++. .+|+++|+++ ++..+++ +..... ....+
T Consensus 59 ~a~KL~~i~~~-~~~~~g~~VLDlGcGtG~~s~~la~~--~~V~gvD~s~-m~~~a~~----~~~~~~-------~~~~~ 123 (265)
T 2oxt_A 59 GTAKLAWMEER-GYVELTGRVVDLGCGRGGWSYYAASR--PHVMDVRAYT-LGVGGHE----VPRITE-------SYGWN 123 (265)
T ss_dssp HHHHHHHHHHH-TSCCCCEEEEEESCTTSHHHHHHHTS--TTEEEEEEEC-CCCSSCC----CCCCCC-------BTTGG
T ss_pred HHHHHHHHHHc-CCCCCCCEEEEeCcCCCHHHHHHHHc--CcEEEEECch-hhhhhhh----hhhhhh-------ccCCC
Confidence 45666666655 33346789999999999999988888 4899999987 4221110 110000 00014
Q ss_pred eEEE--eecCCCCCcCCCCCCCCCEEEEcccccCCCCh----H---HHHHHHHHHhccCC--CCccccccC
Q 038343 86 VQCV--HLPWESASESGLSAFVPEIILGADILYDRSCF----P---DLVRILAILLNRRK--SVSSSRKES 145 (191)
Q Consensus 86 i~~~--~ldw~~~~~~~~~~~~fDvIi~~d~ly~~~~~----~---~ll~~l~~ll~~~g--~~~~~~~~~ 145 (191)
+.+. ..|..+ +++.+||+|++.-. +..... . .+++.+.++|+||| ...+..+.|
T Consensus 124 v~~~~~~~D~~~-----l~~~~fD~V~sd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv~~~ 188 (265)
T 2oxt_A 124 IVKFKSRVDIHT-----LPVERTDVIMCDVG-ESSPKWSVESERTIKILELLEKWKVKNPSADFVVKVLCP 188 (265)
T ss_dssp GEEEECSCCTTT-----SCCCCCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEESCT
T ss_pred eEEEecccCHhH-----CCCCCCcEEEEeCc-ccCCccchhHHHHHHHHHHHHHHhccCCCeEEEEEeCCC
Confidence 5555 555543 23468999998544 332221 1 27888999999999 544433443
|
| >3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=2.2e-09 Score=84.85 Aligned_cols=82 Identities=16% Similarity=0.105 Sum_probs=62.2
Q ss_pred HhhCCCCCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecC
Q 038343 14 ILSFPEIFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPW 93 (191)
Q Consensus 14 l~~~~~~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw 93 (191)
+.+.....++.+|||+|||+|.++..+++.+. +|+++|+++.+++.+++++... .++.+...|.
T Consensus 42 Iv~~l~~~~~~~VLEIG~G~G~lT~~La~~~~-~V~aVEid~~li~~a~~~~~~~---------------~~v~vi~gD~ 105 (295)
T 3gru_A 42 AVESANLTKDDVVLEIGLGKGILTEELAKNAK-KVYVIEIDKSLEPYANKLKELY---------------NNIEIIWGDA 105 (295)
T ss_dssp HHHHTTCCTTCEEEEECCTTSHHHHHHHHHSS-EEEEEESCGGGHHHHHHHHHHC---------------SSEEEEESCT
T ss_pred HHHhcCCCCcCEEEEECCCchHHHHHHHhcCC-EEEEEECCHHHHHHHHHHhccC---------------CCeEEEECch
Confidence 33333444678999999999999998888854 9999999999999999988621 3577888887
Q ss_pred CCCCcCCCCCCCCCEEEEccc
Q 038343 94 ESASESGLSAFVPEIILGADI 114 (191)
Q Consensus 94 ~~~~~~~~~~~~fDvIi~~d~ 114 (191)
.+.. ++..+||+|+++-.
T Consensus 106 l~~~---~~~~~fD~Iv~NlP 123 (295)
T 3gru_A 106 LKVD---LNKLDFNKVVANLP 123 (295)
T ss_dssp TTSC---GGGSCCSEEEEECC
T ss_pred hhCC---cccCCccEEEEeCc
Confidence 6543 23346999997643
|
| >3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=98.98 E-value=3.4e-09 Score=86.78 Aligned_cols=110 Identities=15% Similarity=0.130 Sum_probs=80.1
Q ss_pred HHHHHHhhCCCCCCCCcEEEeCCCccHHHHHHHhcCC---------------------------------------CeEE
Q 038343 9 LLSEFILSFPEIFSNKSCFEVGSGVGLVGICLAHVKA---------------------------------------SKVT 49 (191)
Q Consensus 9 ~L~~~l~~~~~~~~~~~VLElG~GtG~~~~~la~~g~---------------------------------------~~v~ 49 (191)
.|+..+.......++..+||.+||+|.+.+.++..+. .+|+
T Consensus 181 ~LAaall~l~~~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~ 260 (384)
T 3ldg_A 181 NMAAAIILLSNWFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDIS 260 (384)
T ss_dssp HHHHHHHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEE
T ss_pred HHHHHHHHHhCCCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEE
Confidence 4555555444445678999999999999887776533 2599
Q ss_pred EEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCCCCCCCCCEEEEcccccCC----CChHHHH
Q 038343 50 LTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESGLSAFVPEIILGADILYDR----SCFPDLV 125 (191)
Q Consensus 50 ~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~~~~~~fDvIi~~d~ly~~----~~~~~ll 125 (191)
++|+++.+++.+++|++.+++. ..+.+...|..+... ..+||+|+++..+... .....+.
T Consensus 261 GvDid~~al~~Ar~Na~~~gl~------------~~I~~~~~D~~~l~~----~~~fD~Iv~NPPYG~rl~~~~~l~~ly 324 (384)
T 3ldg_A 261 GFDFDGRMVEIARKNAREVGLE------------DVVKLKQMRLQDFKT----NKINGVLISNPPYGERLLDDKAVDILY 324 (384)
T ss_dssp EEESCHHHHHHHHHHHHHTTCT------------TTEEEEECCGGGCCC----CCCSCEEEECCCCTTTTSCHHHHHHHH
T ss_pred EEECCHHHHHHHHHHHHHcCCC------------CceEEEECChHHCCc----cCCcCEEEECCchhhccCCHHHHHHHH
Confidence 9999999999999999999865 457788877665432 2479999986543321 2356677
Q ss_pred HHHHHHhcc
Q 038343 126 RILAILLNR 134 (191)
Q Consensus 126 ~~l~~ll~~ 134 (191)
+.+.+.|++
T Consensus 325 ~~lg~~lk~ 333 (384)
T 3ldg_A 325 NEMGETFAP 333 (384)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHhh
Confidence 777788887
|
| >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=3.8e-10 Score=90.10 Aligned_cols=108 Identities=14% Similarity=0.037 Sum_probs=75.3
Q ss_pred CCCcEEEeCCCccHHHHHHHhc-CCCeEEEEcCChHHHHHHHHHHHH-hcCCCCcccccccCCCCeeEEEeecCCCCCcC
Q 038343 22 SNKSCFEVGSGVGLVGICLAHV-KASKVTLTDGDHLTLANMRSNLEL-NQLSTDTSLLESYEDPNVVQCVHLPWESASES 99 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~-g~~~v~~tD~~~~~l~~~~~n~~~-n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~ 99 (191)
++++|||||||+|..+..+++. +..+|+++|+++.+++.+++++.. +..... ..++++...|..+...
T Consensus 77 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~---------~~~v~~~~~D~~~~l~- 146 (314)
T 1uir_A 77 EPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFD---------DPRAVLVIDDARAYLE- 146 (314)
T ss_dssp CCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGG---------CTTEEEEESCHHHHHH-
T ss_pred CCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhcccccc---------CCceEEEEchHHHHHH-
Confidence 4579999999999999988876 345999999999999999998764 221000 1356777666432211
Q ss_pred CCCCCCCCEEEEcccccCC---CC-----hHHHHHHHHHHhccCCCCccc
Q 038343 100 GLSAFVPEIILGADILYDR---SC-----FPDLVRILAILLNRRKSVSSS 141 (191)
Q Consensus 100 ~~~~~~fDvIi~~d~ly~~---~~-----~~~ll~~l~~ll~~~g~~~~~ 141 (191)
...++||+|++. ..... .. ...+++.++++|+|+|.....
T Consensus 147 -~~~~~fD~Ii~d-~~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~ 194 (314)
T 1uir_A 147 -RTEERYDVVIID-LTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQ 194 (314)
T ss_dssp -HCCCCEEEEEEE-CCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEE
T ss_pred -hcCCCccEEEEC-CCCcccccCcchhccHHHHHHHHHHhcCCCcEEEEE
Confidence 123579999984 33322 11 478899999999999865543
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=2.2e-09 Score=86.71 Aligned_cols=92 Identities=16% Similarity=0.150 Sum_probs=71.6
Q ss_pred CCCcEEEeCCCccHHHHHHHhcC-CCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCC
Q 038343 22 SNKSCFEVGSGVGLVGICLAHVK-ASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESG 100 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~g-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~ 100 (191)
+..+|||+|||+|..+..+++.. ..+++++|+ +.+++.+++ . .++.+...|..+.
T Consensus 188 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~-------------~~v~~~~~d~~~~---- 243 (352)
T 1fp2_A 188 GLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLSG------S-------------NNLTYVGGDMFTS---- 243 (352)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC------B-------------TTEEEEECCTTTC----
T ss_pred cCceEEEeCCCccHHHHHHHHHCCCCeEEEeeC-HHHHhhccc------C-------------CCcEEEeccccCC----
Confidence 45799999999999988777653 238999999 888766542 0 1377788877542
Q ss_pred CCCCCCCEEEEcccccCCCChH--HHHHHHHHHhcc---CCCCc
Q 038343 101 LSAFVPEIILGADILYDRSCFP--DLVRILAILLNR---RKSVS 139 (191)
Q Consensus 101 ~~~~~fDvIi~~d~ly~~~~~~--~ll~~l~~ll~~---~g~~~ 139 (191)
++ .||+|++..++++..+.+ .+++.++++|+| ||...
T Consensus 244 ~p--~~D~v~~~~~lh~~~d~~~~~~l~~~~~~L~p~~~gG~l~ 285 (352)
T 1fp2_A 244 IP--NADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVT 285 (352)
T ss_dssp CC--CCSEEEEESCGGGSCHHHHHHHHHHHHHHHSGGGCCCEEE
T ss_pred CC--CccEEEeehhhccCCHHHHHHHHHHHHHhCCCCCCCcEEE
Confidence 22 399999999999888777 999999999999 76543
|
| >2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=98.93 E-value=1.3e-08 Score=81.07 Aligned_cols=77 Identities=19% Similarity=0.102 Sum_probs=58.2
Q ss_pred CCCcEEEeCCCccHHHHHHHhc--CCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcC
Q 038343 22 SNKSCFEVGSGVGLVGICLAHV--KASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASES 99 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~--g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~ 99 (191)
++.+|||+|||+|..++.++.. +..+|+++|+++.+++.+++|++.++.. ++.+...|+.+....
T Consensus 102 ~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~~-------------~v~~~~~D~~~~~~~ 168 (309)
T 2b9e_A 102 PGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVS-------------CCELAEEDFLAVSPS 168 (309)
T ss_dssp TTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCC-------------SEEEEECCGGGSCTT
T ss_pred CCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-------------eEEEEeCChHhcCcc
Confidence 6779999999999988877764 3358999999999999999999998753 467777776543211
Q ss_pred CCCCCCCCEEEE
Q 038343 100 GLSAFVPEIILG 111 (191)
Q Consensus 100 ~~~~~~fDvIi~ 111 (191)
.....+||.|++
T Consensus 169 ~~~~~~fD~Vl~ 180 (309)
T 2b9e_A 169 DPRYHEVHYILL 180 (309)
T ss_dssp CGGGTTEEEEEE
T ss_pred ccccCCCCEEEE
Confidence 101146999996
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=1.5e-09 Score=88.34 Aligned_cols=94 Identities=12% Similarity=-0.037 Sum_probs=73.0
Q ss_pred CCCCcEEEeCCCccHHHHHHHhcCC-CeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcC
Q 038343 21 FSNKSCFEVGSGVGLVGICLAHVKA-SKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASES 99 (191)
Q Consensus 21 ~~~~~VLElG~GtG~~~~~la~~g~-~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~ 99 (191)
.++.+|||+|||+|..+..+++.+. .+++++|+ +.+++.+++. .++.+...|..+.
T Consensus 208 ~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-------------------~~v~~~~~d~~~~--- 264 (372)
T 1fp1_D 208 EGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENAPPL-------------------SGIEHVGGDMFAS--- 264 (372)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC-------------------TTEEEEECCTTTC---
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeCh-HHHHHhhhhc-------------------CCCEEEeCCcccC---
Confidence 3567999999999999988777643 37888999 8887655420 2477788887652
Q ss_pred CCCCCCCCEEEEcccccCCCChH--HHHHHHHHHhccCCCCcc
Q 038343 100 GLSAFVPEIILGADILYDRSCFP--DLVRILAILLNRRKSVSS 140 (191)
Q Consensus 100 ~~~~~~fDvIi~~d~ly~~~~~~--~ll~~l~~ll~~~g~~~~ 140 (191)
++ .||+|++..++++..+.+ .+++.++++|+|+|....
T Consensus 265 -~~--~~D~v~~~~~lh~~~d~~~~~~l~~~~~~L~pgG~l~i 304 (372)
T 1fp1_D 265 -VP--QGDAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVII 304 (372)
T ss_dssp -CC--CEEEEEEESSGGGSCHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred -CC--CCCEEEEecccccCCHHHHHHHHHHHHHhcCCCCEEEE
Confidence 22 299999999999888777 999999999999976543
|
| >2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A | Back alignment and structure |
|---|
Probab=98.91 E-value=4.3e-10 Score=87.63 Aligned_cols=96 Identities=10% Similarity=-0.059 Sum_probs=69.8
Q ss_pred CCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHh--cCCCCcccccccCCCCeeEEEeecCCCCCcC
Q 038343 22 SNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELN--QLSTDTSLLESYEDPNVVQCVHLPWESASES 99 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n--~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~ 99 (191)
.+++|||+|||+|.++..+++.+ .+|+++|+++.+++.+++++... ... ..++.+...|..+..
T Consensus 72 ~~~~VL~iG~G~G~~~~~ll~~~-~~v~~veid~~~i~~ar~~~~~~~~~~~-----------~~rv~~~~~D~~~~~-- 137 (262)
T 2cmg_A 72 ELKEVLIVDGFDLELAHQLFKYD-THIDFVQADEKILDSFISFFPHFHEVKN-----------NKNFTHAKQLLDLDI-- 137 (262)
T ss_dssp CCCEEEEESSCCHHHHHHHTTSS-CEEEEECSCHHHHGGGTTTSTTHHHHHT-----------CTTEEEESSGGGSCC--
T ss_pred CCCEEEEEeCCcCHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhhccccC-----------CCeEEEEechHHHHH--
Confidence 45799999999999988777666 79999999999999998765321 111 134666655543221
Q ss_pred CCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCcc
Q 038343 100 GLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVSS 140 (191)
Q Consensus 100 ~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~~ 140 (191)
++||+|++. ..+...+++.++++|+|+|....
T Consensus 138 ----~~fD~Ii~d-----~~dp~~~~~~~~~~L~pgG~lv~ 169 (262)
T 2cmg_A 138 ----KKYDLIFCL-----QEPDIHRIDGLKRMLKEDGVFIS 169 (262)
T ss_dssp ----CCEEEEEES-----SCCCHHHHHHHHTTEEEEEEEEE
T ss_pred ----hhCCEEEEC-----CCChHHHHHHHHHhcCCCcEEEE
Confidence 579999984 23345689999999999986544
|
| >2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=98.90 E-value=6.3e-09 Score=83.89 Aligned_cols=100 Identities=8% Similarity=-0.071 Sum_probs=72.6
Q ss_pred CCCcEEEeCCCccHHHHHHHhcCC------CeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCC
Q 038343 22 SNKSCFEVGSGVGLVGICLAHVKA------SKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWES 95 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~g~------~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~ 95 (191)
++.+|||+|||+|.+.+.+++... .+++++|+++.+++.++.|+..++.. +.+...|...
T Consensus 130 ~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~~--------------~~i~~~D~l~ 195 (344)
T 2f8l_A 130 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQK--------------MTLLHQDGLA 195 (344)
T ss_dssp SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCC--------------CEEEESCTTS
T ss_pred CCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCCC--------------ceEEECCCCC
Confidence 456999999999998887765421 48999999999999999999887642 4555666543
Q ss_pred CCcCCCCCCCCCEEEEcccccCCCC-----------------h-HHHHHHHHHHhccCCCCc
Q 038343 96 ASESGLSAFVPEIILGADILYDRSC-----------------F-PDLVRILAILLNRRKSVS 139 (191)
Q Consensus 96 ~~~~~~~~~~fDvIi~~d~ly~~~~-----------------~-~~ll~~l~~ll~~~g~~~ 139 (191)
.. ...+||+|+++.++.+... . ..++..+.++|+|+|...
T Consensus 196 ~~----~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~ 253 (344)
T 2f8l_A 196 NL----LVDPVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLF 253 (344)
T ss_dssp CC----CCCCEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEE
T ss_pred cc----ccCCccEEEECCCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEE
Confidence 21 2357999999877522111 1 257888889999987543
|
| >3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.89 E-value=3.5e-09 Score=82.14 Aligned_cols=86 Identities=15% Similarity=0.135 Sum_probs=61.3
Q ss_pred HhhCCCCCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecC
Q 038343 14 ILSFPEIFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPW 93 (191)
Q Consensus 14 l~~~~~~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw 93 (191)
+.......++.+|||+|||+|.++..+++.+. +|+++|+++.+++.+++++... .++.+...|.
T Consensus 21 iv~~~~~~~~~~VLEIG~G~G~lt~~La~~~~-~V~avEid~~~~~~~~~~~~~~---------------~~v~~i~~D~ 84 (255)
T 3tqs_A 21 IVSAIHPQKTDTLVEIGPGRGALTDYLLTECD-NLALVEIDRDLVAFLQKKYNQQ---------------KNITIYQNDA 84 (255)
T ss_dssp HHHHHCCCTTCEEEEECCTTTTTHHHHTTTSS-EEEEEECCHHHHHHHHHHHTTC---------------TTEEEEESCT
T ss_pred HHHhcCCCCcCEEEEEcccccHHHHHHHHhCC-EEEEEECCHHHHHHHHHHHhhC---------------CCcEEEEcch
Confidence 33333344677999999999999999998874 9999999999999999887541 3577788887
Q ss_pred CCCCcCCC-CCCCCCEEEEcccccC
Q 038343 94 ESASESGL-SAFVPEIILGADILYD 117 (191)
Q Consensus 94 ~~~~~~~~-~~~~fDvIi~~d~ly~ 117 (191)
.+.....+ ...+|| |+++ .-|+
T Consensus 85 ~~~~~~~~~~~~~~~-vv~N-lPY~ 107 (255)
T 3tqs_A 85 LQFDFSSVKTDKPLR-VVGN-LPYN 107 (255)
T ss_dssp TTCCGGGSCCSSCEE-EEEE-CCHH
T ss_pred HhCCHHHhccCCCeE-EEec-CCcc
Confidence 66542222 234677 5554 4443
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=6.8e-09 Score=84.49 Aligned_cols=95 Identities=15% Similarity=0.007 Sum_probs=71.1
Q ss_pred CCCCCcEEEeCCCccHHHHHHHhcC-CCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCc
Q 038343 20 IFSNKSCFEVGSGVGLVGICLAHVK-ASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASE 98 (191)
Q Consensus 20 ~~~~~~VLElG~GtG~~~~~la~~g-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~ 98 (191)
..+..+|||+|||+|..+..+++.. ..+++++|+ +.+++.++++ .++.+...|+.+.
T Consensus 201 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------------------~~v~~~~~d~~~~-- 258 (368)
T 3reo_A 201 FEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDL-PHVIQDAPAF-------------------SGVEHLGGDMFDG-- 258 (368)
T ss_dssp TTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC-------------------TTEEEEECCTTTC--
T ss_pred ccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeh-HHHHHhhhhc-------------------CCCEEEecCCCCC--
Confidence 3356799999999999998777653 338999999 8877655321 2578888887642
Q ss_pred CCCCCCCCCEEEEcccccCCCCh--HHHHHHHHHHhccCCCCcc
Q 038343 99 SGLSAFVPEIILGADILYDRSCF--PDLVRILAILLNRRKSVSS 140 (191)
Q Consensus 99 ~~~~~~~fDvIi~~d~ly~~~~~--~~ll~~l~~ll~~~g~~~~ 140 (191)
++. . |+|++..++|+..+. ..+++.+++.|+|||....
T Consensus 259 --~p~-~-D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i 298 (368)
T 3reo_A 259 --VPK-G-DAIFIKWICHDWSDEHCLKLLKNCYAALPDHGKVIV 298 (368)
T ss_dssp --CCC-C-SEEEEESCGGGBCHHHHHHHHHHHHHHSCTTCEEEE
T ss_pred --CCC-C-CEEEEechhhcCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence 222 2 999999999966543 4789999999999986543
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=1.3e-08 Score=82.82 Aligned_cols=95 Identities=20% Similarity=0.029 Sum_probs=71.3
Q ss_pred CCCCCcEEEeCCCccHHHHHHHhcC-CCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCc
Q 038343 20 IFSNKSCFEVGSGVGLVGICLAHVK-ASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASE 98 (191)
Q Consensus 20 ~~~~~~VLElG~GtG~~~~~la~~g-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~ 98 (191)
..+..+|||+|||+|..+..+++.. ..+++++|+ +.+++.++++ .++.+...|+.+.
T Consensus 199 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------------------~~v~~~~~D~~~~-- 256 (364)
T 3p9c_A 199 FEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDL-PHVISEAPQF-------------------PGVTHVGGDMFKE-- 256 (364)
T ss_dssp TTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC-------------------TTEEEEECCTTTC--
T ss_pred ccCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecC-HHHHHhhhhc-------------------CCeEEEeCCcCCC--
Confidence 3356799999999999988777643 348999999 8777554321 3578888887652
Q ss_pred CCCCCCCCCEEEEcccccCCCC--hHHHHHHHHHHhccCCCCcc
Q 038343 99 SGLSAFVPEIILGADILYDRSC--FPDLVRILAILLNRRKSVSS 140 (191)
Q Consensus 99 ~~~~~~~fDvIi~~d~ly~~~~--~~~ll~~l~~ll~~~g~~~~ 140 (191)
++. . |+|++..++|+..+ ...+++.+++.|+|||+...
T Consensus 257 --~p~-~-D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i 296 (364)
T 3p9c_A 257 --VPS-G-DTILMKWILHDWSDQHCATLLKNCYDALPAHGKVVL 296 (364)
T ss_dssp --CCC-C-SEEEEESCGGGSCHHHHHHHHHHHHHHSCTTCEEEE
T ss_pred --CCC-C-CEEEehHHhccCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence 222 2 99999999997644 55889999999999986543
|
| >1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A | Back alignment and structure |
|---|
Probab=98.81 E-value=1.9e-08 Score=77.37 Aligned_cols=72 Identities=19% Similarity=0.142 Sum_probs=54.6
Q ss_pred HHHHHHhhCCCCCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEE
Q 038343 9 LLSEFILSFPEIFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQC 88 (191)
Q Consensus 9 ~L~~~l~~~~~~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~ 88 (191)
.+.+.+.......++.+|||+|||+|.++..++..+. +|+++|+++.+++.+++++... .++.+
T Consensus 17 ~~~~~i~~~~~~~~~~~VLDiG~G~G~lt~~l~~~~~-~v~~vD~~~~~~~~a~~~~~~~---------------~~v~~ 80 (244)
T 1qam_A 17 HNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRCN-FVTAIEIDHKLCKTTENKLVDH---------------DNFQV 80 (244)
T ss_dssp HHHHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHHSS-EEEEECSCHHHHHHHHHHTTTC---------------CSEEE
T ss_pred HHHHHHHHhCCCCCCCEEEEEeCCchHHHHHHHHcCC-eEEEEECCHHHHHHHHHhhccC---------------CCeEE
Confidence 3445555554445778999999999999999888874 9999999999999998876431 24677
Q ss_pred EeecCCCC
Q 038343 89 VHLPWESA 96 (191)
Q Consensus 89 ~~ldw~~~ 96 (191)
...|..+.
T Consensus 81 ~~~D~~~~ 88 (244)
T 1qam_A 81 LNKDILQF 88 (244)
T ss_dssp ECCCGGGC
T ss_pred EEChHHhC
Confidence 77776543
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=8.7e-09 Score=83.40 Aligned_cols=92 Identities=16% Similarity=0.121 Sum_probs=70.8
Q ss_pred CCCcEEEeCCCccHHHHHHHhcCC-CeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCC
Q 038343 22 SNKSCFEVGSGVGLVGICLAHVKA-SKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESG 100 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~g~-~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~ 100 (191)
+..+|||+|||+|..+..+++... .+++++|. +.+++.+++ . .++.+...|+.+.
T Consensus 193 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~-------------~~v~~~~~d~~~~---- 248 (358)
T 1zg3_A 193 GLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQ-PQVVGNLTG------N-------------ENLNFVGGDMFKS---- 248 (358)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTSEEEEEEC-HHHHSSCCC------C-------------SSEEEEECCTTTC----
T ss_pred CCCEEEEECCCcCHHHHHHHHHCCCCeEEEecc-HHHHhhccc------C-------------CCcEEEeCccCCC----
Confidence 456999999999999987777643 38999999 777754432 1 2377788877642
Q ss_pred CCCCCCCEEEEcccccCCCChH--HHHHHHHHHhcc---CCCCc
Q 038343 101 LSAFVPEIILGADILYDRSCFP--DLVRILAILLNR---RKSVS 139 (191)
Q Consensus 101 ~~~~~fDvIi~~d~ly~~~~~~--~ll~~l~~ll~~---~g~~~ 139 (191)
++ .||+|++..++++..+.+ .+++.+++.|+| +|...
T Consensus 249 ~~--~~D~v~~~~vlh~~~d~~~~~~l~~~~~~L~p~~~gG~l~ 290 (358)
T 1zg3_A 249 IP--SADAVLLKWVLHDWNDEQSLKILKNSKEAISHKGKDGKVI 290 (358)
T ss_dssp CC--CCSEEEEESCGGGSCHHHHHHHHHHHHHHTGGGGGGCEEE
T ss_pred CC--CceEEEEcccccCCCHHHHHHHHHHHHHhCCCCCCCcEEE
Confidence 22 499999999999888766 999999999999 76443
|
| >4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=6e-09 Score=89.94 Aligned_cols=104 Identities=10% Similarity=0.006 Sum_probs=74.0
Q ss_pred CCCCCCCCcEEEeCCCccHHHHHHHh---cCCC--eEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEee
Q 038343 17 FPEIFSNKSCFEVGSGVGLVGICLAH---VKAS--KVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHL 91 (191)
Q Consensus 17 ~~~~~~~~~VLElG~GtG~~~~~la~---~g~~--~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~l 91 (191)
+....+++.||++|||+|.++..+++ .++. +|+++|.++. ...+++.++.|+.. ++|++...
T Consensus 352 ~~~~~~~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp~-A~~a~~~v~~N~~~------------dkVtVI~g 418 (637)
T 4gqb_A 352 EEKDTNVQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNPN-AVVTLENWQFEEWG------------SQVTVVSS 418 (637)
T ss_dssp GGTTTCEEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCHH-HHHHHHHHHHHTTG------------GGEEEEES
T ss_pred ccccCCCcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCHH-HHHHHHHHHhccCC------------CeEEEEeC
Confidence 33444567899999999988554433 3333 7899999974 45677788888865 67999999
Q ss_pred cCCCCCcCCCCCCCCCEEEE---cccccCCCChHHHHHHHHHHhccCCCC
Q 038343 92 PWESASESGLSAFVPEIILG---ADILYDRSCFPDLVRILAILLNRRKSV 138 (191)
Q Consensus 92 dw~~~~~~~~~~~~fDvIi~---~d~ly~~~~~~~ll~~l~~ll~~~g~~ 138 (191)
+.++... +.++|+||+ ...+.+..++ .++...+++|||+|..
T Consensus 419 d~eev~L----PEKVDIIVSEwMG~fLl~E~ml-evL~Ardr~LKPgGim 463 (637)
T 4gqb_A 419 DMREWVA----PEKADIIVSELLGSFADNELSP-ECLDGAQHFLKDDGVS 463 (637)
T ss_dssp CTTTCCC----SSCEEEEECCCCBTTBGGGCHH-HHHHHHGGGEEEEEEE
T ss_pred cceeccC----CcccCEEEEEcCcccccccCCH-HHHHHHHHhcCCCcEE
Confidence 8876542 258999997 2233344444 6788889999999753
|
| >2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=98.78 E-value=1.3e-08 Score=84.83 Aligned_cols=118 Identities=12% Similarity=0.092 Sum_probs=79.2
Q ss_pred HHHHHhhCCCCCCCCcEEEeCCCccHHHHHHHhc--------------CCCeEEEEcCChHHHHHHHHHHHHhcCCCCcc
Q 038343 10 LSEFILSFPEIFSNKSCFEVGSGVGLVGICLAHV--------------KASKVTLTDGDHLTLANMRSNLELNQLSTDTS 75 (191)
Q Consensus 10 L~~~l~~~~~~~~~~~VLElG~GtG~~~~~la~~--------------g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~ 75 (191)
+++++.......++.+|||.|||+|.+.+.+++. ...+++++|+++.++..++.|+..++...
T Consensus 159 v~~~mv~~l~~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~~--- 235 (445)
T 2okc_A 159 LIQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGT--- 235 (445)
T ss_dssp HHHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCS---
T ss_pred HHHHHHHHhCCCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCCCc---
Confidence 3444433322335679999999999887766643 12379999999999999999998887531
Q ss_pred cccccCCCCeeEEEeecCCCCCcCCCCCCCCCEEEEcccccCCCCh-----------------HHHHHHHHHHhccCCCC
Q 038343 76 LLESYEDPNVVQCVHLPWESASESGLSAFVPEIILGADILYDRSCF-----------------PDLVRILAILLNRRKSV 138 (191)
Q Consensus 76 ~~~~~~~~~~i~~~~ldw~~~~~~~~~~~~fDvIi~~d~ly~~~~~-----------------~~ll~~l~~ll~~~g~~ 138 (191)
..+.+...|.-... ...+||+|+++.++...... ..++..+.++|+|+|..
T Consensus 236 --------~~~~i~~gD~l~~~----~~~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~ 303 (445)
T 2okc_A 236 --------DRSPIVCEDSLEKE----PSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRA 303 (445)
T ss_dssp --------SCCSEEECCTTTSC----CSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEE
T ss_pred --------CCCCEeeCCCCCCc----ccCCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEE
Confidence 02344555543321 12379999998776543211 36789999999999866
Q ss_pred cccc
Q 038343 139 SSSR 142 (191)
Q Consensus 139 ~~~~ 142 (191)
..+.
T Consensus 304 a~V~ 307 (445)
T 2okc_A 304 AVVL 307 (445)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 5443
|
| >2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* | Back alignment and structure |
|---|
Probab=98.78 E-value=1.1e-08 Score=81.22 Aligned_cols=108 Identities=11% Similarity=0.004 Sum_probs=66.1
Q ss_pred cHHHHHHHHhhCCCCCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcC----ChHHHHHHHHHHHHhcCCCCcccccccC
Q 038343 6 SSLLLSEFILSFPEIFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDG----DHLTLANMRSNLELNQLSTDTSLLESYE 81 (191)
Q Consensus 6 ~a~~L~~~l~~~~~~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~----~~~~l~~~~~n~~~n~~~~~~~~~~~~~ 81 (191)
++..|.+.+.. ....++.+|||||||+|..+..+++. .+|+++|. ++..++.+. .+..
T Consensus 67 ~a~KL~~i~~~-~~~~~g~~VLDlGcG~G~~s~~la~~--~~V~gvD~~~~~~~~~~~~~~----~~~~----------- 128 (305)
T 2p41_A 67 GSAKLRWFVER-NLVTPEGKVVDLGCGRGGWSYYCGGL--KNVREVKGLTKGGPGHEEPIP----MSTY----------- 128 (305)
T ss_dssp HHHHHHHHHHT-TSSCCCEEEEEETCTTSHHHHHHHTS--TTEEEEEEECCCSTTSCCCCC----CCST-----------
T ss_pred HHHHHHHHHHc-CCCCCCCEEEEEcCCCCHHHHHHHhc--CCEEEEeccccCchhHHHHHH----hhhc-----------
Confidence 45566665555 33346789999999999999999888 37999998 443321100 0000
Q ss_pred CCCeeEEEee-cCCCCCcCCCCCCCCCEEEEcccccCCC----ChH---HHHHHHHHHhccCCC
Q 038343 82 DPNVVQCVHL-PWESASESGLSAFVPEIILGADILYDRS----CFP---DLVRILAILLNRRKS 137 (191)
Q Consensus 82 ~~~~i~~~~l-dw~~~~~~~~~~~~fDvIi~~d~ly~~~----~~~---~ll~~l~~ll~~~g~ 137 (191)
....+.+... |.... +..+||+|++.-.+ +.. +.. .+++.+.++|+|||.
T Consensus 129 ~~~~v~~~~~~D~~~l-----~~~~fD~V~sd~~~-~~g~~~~d~~~~l~~L~~~~~~LkpGG~ 186 (305)
T 2p41_A 129 GWNLVRLQSGVDVFFI-----PPERCDTLLCDIGE-SSPNPTVEAGRTLRVLNLVENWLSNNTQ 186 (305)
T ss_dssp TGGGEEEECSCCTTTS-----CCCCCSEEEECCCC-CCSSHHHHHHHHHHHHHHHHHHCCTTCE
T ss_pred CCCCeEEEeccccccC-----CcCCCCEEEECCcc-ccCcchhhHHHHHHHHHHHHHHhCCCCE
Confidence 0024556555 44322 23589999984332 211 111 467888899999984
|
| >3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A* | Back alignment and structure |
|---|
Probab=98.77 E-value=1.4e-08 Score=79.28 Aligned_cols=78 Identities=21% Similarity=0.190 Sum_probs=57.6
Q ss_pred CCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcC
Q 038343 20 IFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASES 99 (191)
Q Consensus 20 ~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~ 99 (191)
..++ +|||+|||+|.++..+++.+. +|+++|+++.+++.+++++.. .++.+...|..+....
T Consensus 45 ~~~~-~VLEIG~G~G~lt~~L~~~~~-~V~avEid~~~~~~l~~~~~~----------------~~v~vi~~D~l~~~~~ 106 (271)
T 3fut_A 45 PFTG-PVFEVGPGLGALTRALLEAGA-EVTAIEKDLRLRPVLEETLSG----------------LPVRLVFQDALLYPWE 106 (271)
T ss_dssp CCCS-CEEEECCTTSHHHHHHHHTTC-CEEEEESCGGGHHHHHHHTTT----------------SSEEEEESCGGGSCGG
T ss_pred CCCC-eEEEEeCchHHHHHHHHHcCC-EEEEEECCHHHHHHHHHhcCC----------------CCEEEEECChhhCChh
Confidence 3467 999999999999999999875 899999999999999887642 2467777776544321
Q ss_pred CCCCCCCCEEEEcccccCC
Q 038343 100 GLSAFVPEIILGADILYDR 118 (191)
Q Consensus 100 ~~~~~~fDvIi~~d~ly~~ 118 (191)
.. ..+|.|+++ .-|+.
T Consensus 107 ~~--~~~~~iv~N-lPy~i 122 (271)
T 3fut_A 107 EV--PQGSLLVAN-LPYHI 122 (271)
T ss_dssp GS--CTTEEEEEE-ECSSC
T ss_pred hc--cCccEEEec-Ccccc
Confidence 11 257888875 44554
|
| >3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B* | Back alignment and structure |
|---|
Probab=98.77 E-value=2e-08 Score=77.54 Aligned_cols=87 Identities=17% Similarity=0.196 Sum_probs=60.4
Q ss_pred HHHhhCCCCCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEee
Q 038343 12 EFILSFPEIFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHL 91 (191)
Q Consensus 12 ~~l~~~~~~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~l 91 (191)
+.+.......++.+|||+|||+|.++..+++.++.+|+++|+++.+++.++++ .. .++.+...
T Consensus 21 ~~iv~~~~~~~~~~VLDiG~G~G~lt~~L~~~~~~~v~avEid~~~~~~~~~~---~~--------------~~v~~i~~ 83 (249)
T 3ftd_A 21 KKIAEELNIEEGNTVVEVGGGTGNLTKVLLQHPLKKLYVIELDREMVENLKSI---GD--------------ERLEVINE 83 (249)
T ss_dssp HHHHHHTTCCTTCEEEEEESCHHHHHHHHTTSCCSEEEEECCCHHHHHHHTTS---CC--------------TTEEEECS
T ss_pred HHHHHhcCCCCcCEEEEEcCchHHHHHHHHHcCCCeEEEEECCHHHHHHHHhc---cC--------------CCeEEEEc
Confidence 33333333446779999999999999999998756999999999999998866 11 24677777
Q ss_pred cCCCCCcCCCCCCCCCEEEEcccccCC
Q 038343 92 PWESASESGLSAFVPEIILGADILYDR 118 (191)
Q Consensus 92 dw~~~~~~~~~~~~fDvIi~~d~ly~~ 118 (191)
|..+.......+ ++++.++.-|+.
T Consensus 84 D~~~~~~~~~~~---~~~vv~NlPy~i 107 (249)
T 3ftd_A 84 DASKFPFCSLGK---ELKVVGNLPYNV 107 (249)
T ss_dssp CTTTCCGGGSCS---SEEEEEECCTTT
T ss_pred chhhCChhHccC---CcEEEEECchhc
Confidence 765543222111 445556677754
|
| >2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A | Back alignment and structure |
|---|
Probab=98.76 E-value=1.1e-08 Score=79.39 Aligned_cols=102 Identities=15% Similarity=0.187 Sum_probs=61.5
Q ss_pred CcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccC-CCCeeEEEeecCCCCCcCCCC
Q 038343 24 KSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYE-DPNVVQCVHLPWESASESGLS 102 (191)
Q Consensus 24 ~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~-~~~~i~~~~ldw~~~~~~~~~ 102 (191)
.+|||+|||+|..++.+++.|+ +|+++|.++.+...+++|++........ +. -..++++...|..+... .+.
T Consensus 90 ~~VLDl~~G~G~dal~lA~~g~-~V~~vE~~~~~~~l~~~~l~~a~~~~~~-----~~~l~~~i~~~~~D~~~~L~-~~~ 162 (258)
T 2oyr_A 90 PDVVDATAGLGRDAFVLASVGC-RVRMLERNPVVAALLDDGLARGYADAEI-----GGWLQERLQLIHASSLTALT-DIT 162 (258)
T ss_dssp CCEEETTCTTCHHHHHHHHHTC-CEEEEECCHHHHHHHHHHHHHHHHCTTT-----HHHHHHHEEEEESCHHHHST-TCS
T ss_pred CEEEEcCCcCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHHHhhHhh-----hhhhhcCEEEEECCHHHHHH-hCc
Confidence 7999999999999999999887 7999999999888888776543211000 00 00246666665433211 112
Q ss_pred CCCCCEEEEcccccCCCChHHHHHHHHHHhcc
Q 038343 103 AFVPEIILGADILYDRSCFPDLVRILAILLNR 134 (191)
Q Consensus 103 ~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~ 134 (191)
.+||+|+. |..|....-..+++...+++++
T Consensus 163 -~~fDvV~l-DP~y~~~~~saavkk~~~~lr~ 192 (258)
T 2oyr_A 163 -PRPQVVYL-DPMFPHKQKSALVKKEMRVFQS 192 (258)
T ss_dssp -SCCSEEEE-CCCCCCCCC-----HHHHHHHH
T ss_pred -ccCCEEEE-cCCCCCcccchHHHHHHHHHHH
Confidence 26999987 5666444333333433344433
|
| >2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A | Back alignment and structure |
|---|
Probab=98.75 E-value=2.5e-09 Score=77.81 Aligned_cols=89 Identities=9% Similarity=-0.083 Sum_probs=67.0
Q ss_pred CCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcC
Q 038343 20 IFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASES 99 (191)
Q Consensus 20 ~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~ 99 (191)
..+|.+|||+|||+ | .+|+++.|++.++++... ++.+...|..+....
T Consensus 10 ~~~g~~vL~~~~g~--------------v-~vD~s~~ml~~a~~~~~~-----------------~~~~~~~d~~~~~~~ 57 (176)
T 2ld4_A 10 ISAGQFVAVVWDKS--------------S-PVEALKGLVDKLQALTGN-----------------EGRVSVENIKQLLQS 57 (176)
T ss_dssp CCTTSEEEEEECTT--------------S-CHHHHHHHHHHHHHHTTT-----------------TSEEEEEEGGGGGGG
T ss_pred CCCCCEEEEecCCc--------------e-eeeCCHHHHHHHHHhccc-----------------CcEEEEechhcCccc
Confidence 34678999999986 2 289999999999876422 245566665543211
Q ss_pred CCCCCCCCEEEEcccccCC-CChHHHHHHHHHHhccCCCCcc
Q 038343 100 GLSAFVPEIILGADILYDR-SCFPDLVRILAILLNRRKSVSS 140 (191)
Q Consensus 100 ~~~~~~fDvIi~~d~ly~~-~~~~~ll~~l~~ll~~~g~~~~ 140 (191)
.+.+++||+|+++.++++. .+...+++.++++|||||....
T Consensus 58 ~~~~~~fD~V~~~~~l~~~~~~~~~~l~~~~r~LkpgG~l~~ 99 (176)
T 2ld4_A 58 AHKESSFDIILSGLVPGSTTLHSAEILAEIARILRPGGCLFL 99 (176)
T ss_dssp CCCSSCEEEEEECCSTTCCCCCCHHHHHHHHHHEEEEEEEEE
T ss_pred cCCCCCEeEEEECChhhhcccCHHHHHHHHHHHCCCCEEEEE
Confidence 1245789999999999998 8899999999999999986554
|
| >2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A* | Back alignment and structure |
|---|
Probab=98.73 E-value=1.5e-08 Score=83.52 Aligned_cols=106 Identities=12% Similarity=0.029 Sum_probs=71.5
Q ss_pred HHHHHHHhhCCCCCCCCcEEEeCCCccHHHHHHHhc--CCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCe
Q 038343 8 LLLSEFILSFPEIFSNKSCFEVGSGVGLVGICLAHV--KASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNV 85 (191)
Q Consensus 8 ~~L~~~l~~~~~~~~~~~VLElG~GtG~~~~~la~~--g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~ 85 (191)
..+++++.......++.+|||+|||+|.+++.+++. ...+++++|+++.+++.+ . +
T Consensus 25 ~~l~~~~~~~~~~~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a------~----------------~ 82 (421)
T 2ih2_A 25 PEVVDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP------P----------------W 82 (421)
T ss_dssp HHHHHHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC------T----------------T
T ss_pred HHHHHHHHHhhccCCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC------C----------------C
Confidence 345566555433334669999999999999987764 335999999999887655 1 2
Q ss_pred eEEEeecCCCCCcCCCCCCCCCEEEEcccccCCCC-----------------------------hHHHHHHHHHHhccCC
Q 038343 86 VQCVHLPWESASESGLSAFVPEIILGADILYDRSC-----------------------------FPDLVRILAILLNRRK 136 (191)
Q Consensus 86 i~~~~ldw~~~~~~~~~~~~fDvIi~~d~ly~~~~-----------------------------~~~ll~~l~~ll~~~g 136 (191)
+.+...|+.+.. ...+||+|+++..+..... ...+++.+.++|+++|
T Consensus 83 ~~~~~~D~~~~~----~~~~fD~Ii~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G 158 (421)
T 2ih2_A 83 AEGILADFLLWE----PGEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGG 158 (421)
T ss_dssp EEEEESCGGGCC----CSSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEE
T ss_pred CcEEeCChhhcC----ccCCCCEEEECcCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCC
Confidence 455565554332 2357999999766543322 1256888889999997
Q ss_pred CCc
Q 038343 137 SVS 139 (191)
Q Consensus 137 ~~~ 139 (191)
...
T Consensus 159 ~~~ 161 (421)
T 2ih2_A 159 VLV 161 (421)
T ss_dssp EEE
T ss_pred EEE
Confidence 544
|
| >3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A* | Back alignment and structure |
|---|
Probab=98.71 E-value=7.4e-08 Score=75.19 Aligned_cols=106 Identities=15% Similarity=0.061 Sum_probs=72.4
Q ss_pred CcEEEeCCCc---cHHHHHHHhc-CCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCc-
Q 038343 24 KSCFEVGSGV---GLVGICLAHV-KASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASE- 98 (191)
Q Consensus 24 ~~VLElG~Gt---G~~~~~la~~-g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~- 98 (191)
.+|||||||+ |.+...+.+. ...+|+++|.|+.||..+++.+..+.. .++.+...|..+...
T Consensus 80 ~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~~-------------~~~~~v~aD~~~~~~~ 146 (277)
T 3giw_A 80 RQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTPE-------------GRTAYVEADMLDPASI 146 (277)
T ss_dssp CEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCSS-------------SEEEEEECCTTCHHHH
T ss_pred CEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCCC-------------CcEEEEEecccChhhh
Confidence 4899999996 4444444432 234999999999999999887653321 357788888765310
Q ss_pred --CCCCCCCCC-----EEEEcccccCCCC---hHHHHHHHHHHhccCCCCcccc
Q 038343 99 --SGLSAFVPE-----IILGADILYDRSC---FPDLVRILAILLNRRKSVSSSR 142 (191)
Q Consensus 99 --~~~~~~~fD-----vIi~~d~ly~~~~---~~~ll~~l~~ll~~~g~~~~~~ 142 (191)
.......|| .|+++-++++..+ ...+++.+.+.|+|||......
T Consensus 147 l~~~~~~~~~D~~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~PGG~Lvls~ 200 (277)
T 3giw_A 147 LDAPELRDTLDLTRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPSGSYLAMSI 200 (277)
T ss_dssp HTCHHHHTTCCTTSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCTTCEEEEEE
T ss_pred hcccccccccCcCCcchHHhhhhHhcCCchhhHHHHHHHHHHhCCCCcEEEEEe
Confidence 000012233 5778889998877 4579999999999998655443
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=8.5e-08 Score=84.20 Aligned_cols=119 Identities=15% Similarity=0.110 Sum_probs=82.3
Q ss_pred HHHHHHhhCCCCCCCCcEEEeCCCccHHHHHHHhcCC-------------------------------------------
Q 038343 9 LLSEFILSFPEIFSNKSCFEVGSGVGLVGICLAHVKA------------------------------------------- 45 (191)
Q Consensus 9 ~L~~~l~~~~~~~~~~~VLElG~GtG~~~~~la~~g~------------------------------------------- 45 (191)
.|+..+.......++..|||.+||+|.+.+.++..+.
T Consensus 177 ~LAa~ll~~~~~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~ 256 (703)
T 3v97_A 177 TLAAAIVMRSGWQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYS 256 (703)
T ss_dssp HHHHHHHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHhhCCCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCC
Confidence 4555555444444677999999999998887665421
Q ss_pred CeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCCCCCCCCCEEEEcccccCC-----CC
Q 038343 46 SKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESGLSAFVPEIILGADILYDR-----SC 120 (191)
Q Consensus 46 ~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~~~~~~fDvIi~~d~ly~~-----~~ 120 (191)
.+++++|+++.+++.++.|+..+++. ..+.+...|..+... ....++||+|+++.. |.. ..
T Consensus 257 ~~i~G~Did~~av~~A~~N~~~agv~------------~~i~~~~~D~~~~~~-~~~~~~~d~Iv~NPP-YG~Rlg~~~~ 322 (703)
T 3v97_A 257 SHFYGSDSDARVIQRARTNARLAGIG------------ELITFEVKDVAQLTN-PLPKGPYGTVLSNPP-YGERLDSEPA 322 (703)
T ss_dssp CCEEEEESCHHHHHHHHHHHHHTTCG------------GGEEEEECCGGGCCC-SCTTCCCCEEEECCC-CCC---CCHH
T ss_pred ccEEEEECCHHHHHHHHHHHHHcCCC------------CceEEEECChhhCcc-ccccCCCCEEEeCCC-ccccccchhH
Confidence 37999999999999999999999876 457788877654321 112237999999755 432 24
Q ss_pred hHHHHHHHHHHhc---cCCCCccc
Q 038343 121 FPDLVRILAILLN---RRKSVSSS 141 (191)
Q Consensus 121 ~~~ll~~l~~ll~---~~g~~~~~ 141 (191)
...+.+.+.+.++ ||+....+
T Consensus 323 l~~ly~~l~~~lk~~~~g~~~~il 346 (703)
T 3v97_A 323 LIALHSLLGRIMKNQFGGWNLSLF 346 (703)
T ss_dssp HHHHHHHHHHHHHHHCTTCEEEEE
T ss_pred HHHHHHHHHHHHHhhCCCCeEEEE
Confidence 5666777777766 45544443
|
| >1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=98.68 E-value=4.7e-10 Score=86.34 Aligned_cols=102 Identities=19% Similarity=0.213 Sum_probs=69.4
Q ss_pred CCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcC
Q 038343 20 IFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASES 99 (191)
Q Consensus 20 ~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~ 99 (191)
..++.+|||+|||+|..+..+++.+ .+|+++|+++.+++.+++++.. . .++.+...|+.+..
T Consensus 27 ~~~~~~VLDiG~G~G~~~~~l~~~~-~~v~~id~~~~~~~~a~~~~~~---~------------~~v~~~~~D~~~~~-- 88 (245)
T 1yub_A 27 LKETDTVYEIGTGKGHLTTKLAKIS-KQVTSIELDSHLFNLSSEKLKL---N------------TRVTLIHQDILQFQ-- 88 (245)
T ss_dssp CCSSEEEEECSCCCSSCSHHHHHHS-SEEEESSSSCSSSSSSSCTTTT---C------------SEEEECCSCCTTTT--
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHhC-CeEEEEECCHHHHHHHHHHhcc---C------------CceEEEECChhhcC--
Confidence 3467799999999999999888887 4999999999998888766541 1 35777777765542
Q ss_pred CCC-CCCCCEEEEcccccCCC------------ChHHHH----HHHHHHhccCCCCcccc
Q 038343 100 GLS-AFVPEIILGADILYDRS------------CFPDLV----RILAILLNRRKSVSSSR 142 (191)
Q Consensus 100 ~~~-~~~fDvIi~~d~ly~~~------------~~~~ll----~~l~~ll~~~g~~~~~~ 142 (191)
+. +++| .|++ +.-|+.. .....+ +.+.++|+|+|....+.
T Consensus 89 -~~~~~~f-~vv~-n~Py~~~~~~~~~~~~~~~~~~~~lm~q~e~a~rll~~~G~l~v~~ 145 (245)
T 1yub_A 89 -FPNKQRY-KIVG-NIPYHLSTQIIKKVVFESRASDIYLIVEEGFYKRTLDIHRTLGLLL 145 (245)
T ss_dssp -CCCSSEE-EEEE-ECCSSSCHHHHHHHHHHCCCEEEEEEEESSHHHHHHCGGGSHHHHT
T ss_pred -cccCCCc-EEEE-eCCccccHHHHHHHHhCCCCCeEEEEeeHHHHHHHhCCCCchhhhh
Confidence 22 2467 5555 4444432 122223 66889999997655443
|
| >3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A* | Back alignment and structure |
|---|
Probab=98.62 E-value=1.1e-08 Score=83.78 Aligned_cols=95 Identities=8% Similarity=-0.053 Sum_probs=65.0
Q ss_pred CCCcEEEeCCC------ccHHHHHHHh-c-CCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecC
Q 038343 22 SNKSCFEVGSG------VGLVGICLAH-V-KASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPW 93 (191)
Q Consensus 22 ~~~~VLElG~G------tG~~~~~la~-~-g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw 93 (191)
++.+||||||| +|..++.+++ . ...+|+++|+++.+. ... .++.+...|.
T Consensus 216 ~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~--------~~~--------------~rI~fv~GDa 273 (419)
T 3sso_A 216 QQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH--------VDE--------------LRIRTIQGDQ 273 (419)
T ss_dssp SCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG--------GCB--------------TTEEEEECCT
T ss_pred CCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh--------hcC--------------CCcEEEEecc
Confidence 56799999999 6666664443 2 334999999998862 111 3578888876
Q ss_pred CCCCcC-CC--CCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCc
Q 038343 94 ESASES-GL--SAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVS 139 (191)
Q Consensus 94 ~~~~~~-~~--~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~ 139 (191)
.+.... .+ ..++||+|++. ..++..+....++.+.++|||||...
T Consensus 274 ~dlpf~~~l~~~d~sFDlVisd-gsH~~~d~~~aL~el~rvLKPGGvlV 321 (419)
T 3sso_A 274 NDAEFLDRIARRYGPFDIVIDD-GSHINAHVRTSFAALFPHVRPGGLYV 321 (419)
T ss_dssp TCHHHHHHHHHHHCCEEEEEEC-SCCCHHHHHHHHHHHGGGEEEEEEEE
T ss_pred cccchhhhhhcccCCccEEEEC-CcccchhHHHHHHHHHHhcCCCeEEE
Confidence 543110 00 03689999974 44555667888999999999997543
|
| >1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A* | Back alignment and structure |
|---|
Probab=98.60 E-value=2.8e-08 Score=78.82 Aligned_cols=77 Identities=16% Similarity=0.056 Sum_probs=56.8
Q ss_pred CCCCcEEEeCCCccHHHHHHHhcC-CCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCc-
Q 038343 21 FSNKSCFEVGSGVGLVGICLAHVK-ASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASE- 98 (191)
Q Consensus 21 ~~~~~VLElG~GtG~~~~~la~~g-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~- 98 (191)
.++.+|||+|||+|..++.+++.. ..+|+++|.++.+++.+++|++.++ .++.+...|+.+...
T Consensus 25 ~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~g--------------~~v~~v~~d~~~l~~~ 90 (301)
T 1m6y_A 25 EDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFS--------------DRVSLFKVSYREADFL 90 (301)
T ss_dssp CTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGT--------------TTEEEEECCGGGHHHH
T ss_pred CCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcC--------------CcEEEEECCHHHHHHH
Confidence 367799999999999999877753 3599999999999999999987765 246777777654311
Q ss_pred -CCCCCCCCCEEEE
Q 038343 99 -SGLSAFVPEIILG 111 (191)
Q Consensus 99 -~~~~~~~fDvIi~ 111 (191)
......+||.|++
T Consensus 91 l~~~g~~~~D~Vl~ 104 (301)
T 1m6y_A 91 LKTLGIEKVDGILM 104 (301)
T ss_dssp HHHTTCSCEEEEEE
T ss_pred HHhcCCCCCCEEEE
Confidence 0011146999886
|
| >3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=98.56 E-value=1.1e-07 Score=74.55 Aligned_cols=60 Identities=10% Similarity=0.058 Sum_probs=47.5
Q ss_pred CCCCCcEEEeCCCccHHHHHHHhcCCCe----EEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCC
Q 038343 20 IFSNKSCFEVGSGVGLVGICLAHVKASK----VTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWES 95 (191)
Q Consensus 20 ~~~~~~VLElG~GtG~~~~~la~~g~~~----v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~ 95 (191)
..++.+|||+|||+|.++..+++.+. + |+++|+++.+++.++++. . .++.+...|..+
T Consensus 40 ~~~~~~VLEIG~G~G~lt~~La~~~~-~~~~~V~avDid~~~l~~a~~~~---~--------------~~v~~i~~D~~~ 101 (279)
T 3uzu_A 40 PERGERMVEIGPGLGALTGPVIARLA-TPGSPLHAVELDRDLIGRLEQRF---G--------------ELLELHAGDALT 101 (279)
T ss_dssp CCTTCEEEEECCTTSTTHHHHHHHHC-BTTBCEEEEECCHHHHHHHHHHH---G--------------GGEEEEESCGGG
T ss_pred CCCcCEEEEEccccHHHHHHHHHhCC-CcCCeEEEEECCHHHHHHHHHhc---C--------------CCcEEEECChhc
Confidence 34677999999999999998888755 4 999999999999999883 1 246777777654
Q ss_pred CC
Q 038343 96 AS 97 (191)
Q Consensus 96 ~~ 97 (191)
..
T Consensus 102 ~~ 103 (279)
T 3uzu_A 102 FD 103 (279)
T ss_dssp CC
T ss_pred CC
Confidence 43
|
| >1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A | Back alignment and structure |
|---|
Probab=98.51 E-value=4.9e-08 Score=75.49 Aligned_cols=67 Identities=13% Similarity=0.078 Sum_probs=47.5
Q ss_pred HHHhhCCCCCCCCcEEEeCCCccHHHHHHHhcCCCe--EEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEE
Q 038343 12 EFILSFPEIFSNKSCFEVGSGVGLVGICLAHVKASK--VTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCV 89 (191)
Q Consensus 12 ~~l~~~~~~~~~~~VLElG~GtG~~~~~la~~g~~~--v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~ 89 (191)
+.+.+.....++.+|||+|||+|.++. +++ +. + |+++|+++.+++.++++...+ .++.+.
T Consensus 11 ~~iv~~~~~~~~~~VLEIG~G~G~lt~-l~~-~~-~~~v~avEid~~~~~~a~~~~~~~---------------~~v~~i 72 (252)
T 1qyr_A 11 DSIVSAINPQKGQAMVEIGPGLAALTE-PVG-ER-LDQLTVIELDRDLAARLQTHPFLG---------------PKLTIY 72 (252)
T ss_dssp HHHHHHHCCCTTCCEEEECCTTTTTHH-HHH-TT-CSCEEEECCCHHHHHHHHTCTTTG---------------GGEEEE
T ss_pred HHHHHhcCCCCcCEEEEECCCCcHHHH-hhh-CC-CCeEEEEECCHHHHHHHHHHhccC---------------CceEEE
Confidence 333333334467799999999998888 665 33 6 999999999999998765432 246677
Q ss_pred eecCCCC
Q 038343 90 HLPWESA 96 (191)
Q Consensus 90 ~ldw~~~ 96 (191)
..|..+.
T Consensus 73 ~~D~~~~ 79 (252)
T 1qyr_A 73 QQDAMTF 79 (252)
T ss_dssp CSCGGGC
T ss_pred ECchhhC
Confidence 7766543
|
| >3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=98.48 E-value=1.8e-06 Score=64.38 Aligned_cols=97 Identities=19% Similarity=0.129 Sum_probs=65.5
Q ss_pred CCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcC--CCCcccccccCCCCeeEEEeecCCCC---
Q 038343 22 SNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQL--STDTSLLESYEDPNVVQCVHLPWESA--- 96 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~--~~~~~~~~~~~~~~~i~~~~ldw~~~--- 96 (191)
+.++|||+|| |..++.+++....+|+.+|.+++..+.+++|++.++. . .++.+...+..+.
T Consensus 30 ~a~~VLEiGt--GySTl~lA~~~~g~VvtvE~d~~~~~~ar~~l~~~g~~~~------------~~I~~~~gda~~~~~w 95 (202)
T 3cvo_A 30 EAEVILEYGS--GGSTVVAAELPGKHVTSVESDRAWARMMKAWLAANPPAEG------------TEVNIVWTDIGPTGDW 95 (202)
T ss_dssp HCSEEEEESC--SHHHHHHHTSTTCEEEEEESCHHHHHHHHHHHHHSCCCTT------------CEEEEEECCCSSBCGG
T ss_pred CCCEEEEECc--hHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCCC------------CceEEEEeCchhhhcc
Confidence 4569999997 5677788875235999999999999999999998875 3 4677776653321
Q ss_pred ---CcC--------------CC-CCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCC
Q 038343 97 ---SES--------------GL-SAFVPEIILGADILYDRSCFPDLVRILAILLNRRKS 137 (191)
Q Consensus 97 ---~~~--------------~~-~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~ 137 (191)
... .. ..++||+|+. |- .-....+.....+|+|||.
T Consensus 96 g~p~~~~~~~~l~~~~~~i~~~~~~~~fDlIfI-Dg----~k~~~~~~~~l~~l~~GG~ 149 (202)
T 3cvo_A 96 GHPVSDAKWRSYPDYPLAVWRTEGFRHPDVVLV-DG----RFRVGCALATAFSITRPVT 149 (202)
T ss_dssp GCBSSSTTGGGTTHHHHGGGGCTTCCCCSEEEE-CS----SSHHHHHHHHHHHCSSCEE
T ss_pred cccccchhhhhHHHHhhhhhccccCCCCCEEEE-eC----CCchhHHHHHHHhcCCCeE
Confidence 100 01 1267999997 22 1122444445588899863
|
| >3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A | Back alignment and structure |
|---|
Probab=98.47 E-value=9.4e-08 Score=82.87 Aligned_cols=113 Identities=12% Similarity=0.115 Sum_probs=73.3
Q ss_pred CCcEEEeCCCccHHHHHH---Hh-cC----------CCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEE
Q 038343 23 NKSCFEVGSGVGLVGICL---AH-VK----------ASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQC 88 (191)
Q Consensus 23 ~~~VLElG~GtG~~~~~l---a~-~g----------~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~ 88 (191)
++.|||+|||+|.++..+ ++ .+ +.+|+++|.++.+...++.... |+.. ++|.+
T Consensus 410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~-Ng~~------------d~VtV 476 (745)
T 3ua3_A 410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNV-RTWK------------RRVTI 476 (745)
T ss_dssp EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHH-HTTT------------TCSEE
T ss_pred CcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHh-cCCC------------CeEEE
Confidence 458999999999887532 21 12 2399999999987766665543 7654 56888
Q ss_pred EeecCCCCCcC--CCCCCCCCEEEEccccc--CCCChHHHHHHHHHHhccCCCCc----cccccCCCC
Q 038343 89 VHLPWESASES--GLSAFVPEIILGADILY--DRSCFPDLVRILAILLNRRKSVS----SSRKESSKG 148 (191)
Q Consensus 89 ~~ldw~~~~~~--~~~~~~fDvIi~~d~ly--~~~~~~~ll~~l~~ll~~~g~~~----~~~~~~~~~ 148 (191)
...+.++.... .....+.|+||+--+=| ..+..+..+..+.++|+|+|... .++.+|...
T Consensus 477 I~gd~eev~lp~~~~~~ekVDIIVSElmGsfl~nEL~pe~Ld~v~r~Lkp~Gi~iP~~~t~ylaPi~~ 544 (745)
T 3ua3_A 477 IESDMRSLPGIAKDRGFEQPDIIVSELLGSFGDNELSPECLDGVTGFLKPTTISIPQKYTSYVKPIMS 544 (745)
T ss_dssp EESCGGGHHHHHHHTTCCCCSEEEECCCBTTBGGGSHHHHHHTTGGGSCTTCEEESCEEEEEEEEEEC
T ss_pred EeCchhhcccccccCCCCcccEEEEeccccccchhccHHHHHHHHHhCCCCcEEECCccEEEEEEecC
Confidence 88876654210 00135899999833212 23355678888899999997433 444455433
|
| >2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A* | Back alignment and structure |
|---|
Probab=98.37 E-value=8e-07 Score=69.99 Aligned_cols=101 Identities=12% Similarity=0.099 Sum_probs=63.5
Q ss_pred HHHHHh-hCCCCCCCCcEEEeCCCc------cHHHHHHHhcC-CCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccC
Q 038343 10 LSEFIL-SFPEIFSNKSCFEVGSGV------GLVGICLAHVK-ASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYE 81 (191)
Q Consensus 10 L~~~l~-~~~~~~~~~~VLElG~Gt------G~~~~~la~~g-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~ 81 (191)
+.+|+. ......++.+|||||||+ |. .+.+...+ ..+|+++|+++. + .
T Consensus 50 l~~~l~~~~l~l~~g~~VLDLGcGsg~~~GpGs-~~~a~~~~~~~~V~gvDis~~-v---------~------------- 105 (290)
T 2xyq_A 50 LCQYLNTLTLAVPYNMRVIHFGAGSDKGVAPGT-AVLRQWLPTGTLLVDSDLNDF-V---------S------------- 105 (290)
T ss_dssp HHHHHTTSCCCCCTTCEEEEESCCCTTSBCHHH-HHHHHHSCTTCEEEEEESSCC-B---------C-------------
T ss_pred HHHHHHHhhcCCCCCCEEEEeCCCCCCCCCcHH-HHHHHHcCCCCEEEEEECCCC-C---------C-------------
Confidence 555663 233345678999999944 66 33333444 248999999986 1 1
Q ss_pred CCCeeEE-EeecCCCCCcCCCCCCCCCEEEEcccccC-----------CCChHHHHHHHHHHhccCCCCccc
Q 038343 82 DPNVVQC-VHLPWESASESGLSAFVPEIILGADILYD-----------RSCFPDLVRILAILLNRRKSVSSS 141 (191)
Q Consensus 82 ~~~~i~~-~~ldw~~~~~~~~~~~~fDvIi~~d~ly~-----------~~~~~~ll~~l~~ll~~~g~~~~~ 141 (191)
++.+ ...|+.+... .++||+|++.-.... ....+.+++.+.++|+|||...+.
T Consensus 106 ---~v~~~i~gD~~~~~~----~~~fD~Vvsn~~~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~ 170 (290)
T 2xyq_A 106 ---DADSTLIGDCATVHT----ANKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVK 170 (290)
T ss_dssp ---SSSEEEESCGGGCCC----SSCEEEEEECCCCCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ---CCEEEEECccccCCc----cCcccEEEEcCCccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 2455 6777654321 257999998421110 122457899999999999876653
|
| >2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B* | Back alignment and structure |
|---|
Probab=98.36 E-value=3.6e-07 Score=77.94 Aligned_cols=111 Identities=7% Similarity=-0.151 Sum_probs=72.9
Q ss_pred CCCCcEEEeCCCccHHHHHHHhc----C---------------CCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccC
Q 038343 21 FSNKSCFEVGSGVGLVGICLAHV----K---------------ASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYE 81 (191)
Q Consensus 21 ~~~~~VLElG~GtG~~~~~la~~----g---------------~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~ 81 (191)
.++.+|+|.+||+|.+.+.+++. + ..+++++|+++.++..++.|+..++.....
T Consensus 168 ~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l~gi~~~~------- 240 (541)
T 2ar0_A 168 QPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNL------- 240 (541)
T ss_dssp CTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCCBG-------
T ss_pred CCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHHhCCCccc-------
Confidence 35679999999999877755542 1 137999999999999999999887754100
Q ss_pred CCCeeEEEeecCCCCCcCCCCCCCCCEEEEcccccCCCC--------------hHHHHHHHHHHhccCCCCccc
Q 038343 82 DPNVVQCVHLPWESASESGLSAFVPEIILGADILYDRSC--------------FPDLVRILAILLNRRKSVSSS 141 (191)
Q Consensus 82 ~~~~i~~~~ldw~~~~~~~~~~~~fDvIi~~d~ly~~~~--------------~~~ll~~l~~ll~~~g~~~~~ 141 (191)
...+.+...|.-... .....+||+|+++.++..... .-.++..+.++|+|+|....+
T Consensus 241 -~~~~~I~~gDtL~~~--~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~a~V 311 (541)
T 2ar0_A 241 -DHGGAIRLGNTLGSD--GENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVV 311 (541)
T ss_dssp -GGTBSEEESCTTSHH--HHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEE
T ss_pred -cccCCeEeCCCcccc--cccccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCCCCEEEEE
Confidence 001333444322110 012357999999876543322 226788889999999876654
|
| >3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=98.34 E-value=3.2e-06 Score=72.05 Aligned_cols=110 Identities=7% Similarity=-0.134 Sum_probs=73.1
Q ss_pred CCCCcEEEeCCCccHHHHHHHhc----CCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCC
Q 038343 21 FSNKSCFEVGSGVGLVGICLAHV----KASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESA 96 (191)
Q Consensus 21 ~~~~~VLElG~GtG~~~~~la~~----g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~ 96 (191)
.++.+|+|.+||||.+.+.+++. +...+++.|+++.++..++.|+..++... ..+.+...|.-..
T Consensus 220 ~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~-----------~~~~I~~gDtL~~ 288 (542)
T 3lkd_A 220 KQGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVPI-----------ENQFLHNADTLDE 288 (542)
T ss_dssp CTTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCCG-----------GGEEEEESCTTTS
T ss_pred CCCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCCc-----------CccceEecceecc
Confidence 35679999999999766655443 23489999999999999999998887631 1344555543322
Q ss_pred CcCCCCCCCCCEEEEcccccCCC----------------------C-hHHHHHHHHHHhc-cCCCCccc
Q 038343 97 SESGLSAFVPEIILGADILYDRS----------------------C-FPDLVRILAILLN-RRKSVSSS 141 (191)
Q Consensus 97 ~~~~~~~~~fDvIi~~d~ly~~~----------------------~-~~~ll~~l~~ll~-~~g~~~~~ 141 (191)
.-......+||+|+++.++-... . .-.++..+.++|+ ++|....+
T Consensus 289 d~p~~~~~~fD~IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~gGr~a~V 357 (542)
T 3lkd_A 289 DWPTQEPTNFDGVLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQDNGVMAIV 357 (542)
T ss_dssp CSCCSSCCCBSEEEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTTTCEEEEE
T ss_pred cccccccccccEEEecCCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCCceeEEEE
Confidence 10012346899999976653111 0 0136888888999 88766544
|
| >2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59 | Back alignment and structure |
|---|
Probab=98.28 E-value=1.6e-07 Score=73.27 Aligned_cols=98 Identities=11% Similarity=0.028 Sum_probs=72.0
Q ss_pred CCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCC
Q 038343 21 FSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESG 100 (191)
Q Consensus 21 ~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~ 100 (191)
+++..+||+.+|||.+++.+.+. ..+++++|.++..++.+++|++.. .++.+...|-.......
T Consensus 90 ~n~~~~LDlfaGSGaLgiEaLS~-~d~~vfvE~~~~a~~~L~~Nl~~~---------------~~~~V~~~D~~~~L~~l 153 (283)
T 2oo3_A 90 INLNSTLSYYPGSPYFAINQLRS-QDRLYLCELHPTEYNFLLKLPHFN---------------KKVYVNHTDGVSKLNAL 153 (283)
T ss_dssp HSSSSSCCEEECHHHHHHHHSCT-TSEEEEECCSHHHHHHHTTSCCTT---------------SCEEEECSCHHHHHHHH
T ss_pred hcCCCceeEeCCcHHHHHHHcCC-CCeEEEEeCCHHHHHHHHHHhCcC---------------CcEEEEeCcHHHHHHHh
Confidence 45668999999999999988874 479999999999999999887541 34666666632111100
Q ss_pred -CCCCCCCEEEEcccccC-CCChHHHHHHHHHHhccC
Q 038343 101 -LSAFVPEIILGADILYD-RSCFPDLVRILAILLNRR 135 (191)
Q Consensus 101 -~~~~~fDvIi~~d~ly~-~~~~~~ll~~l~~ll~~~ 135 (191)
.+..+||+|+. |.-|. ....+.+++.+.+..+..
T Consensus 154 ~~~~~~fdLVfi-DPPYe~k~~~~~vl~~L~~~~~r~ 189 (283)
T 2oo3_A 154 LPPPEKRGLIFI-DPSYERKEEYKEIPYAIKNAYSKF 189 (283)
T ss_dssp CSCTTSCEEEEE-CCCCCSTTHHHHHHHHHHHHHHHC
T ss_pred cCCCCCccEEEE-CCCCCCCcHHHHHHHHHHHhCccC
Confidence 12246999998 88887 568889998888866554
|
| >3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus} | Back alignment and structure |
|---|
Probab=98.23 E-value=3.8e-06 Score=74.08 Aligned_cols=109 Identities=12% Similarity=0.035 Sum_probs=69.4
Q ss_pred CCCcEEEeCCCccHHHHHHHhcC----CCeEEEEcCChHHHHHH--HHHHHHhcCCCCcccccccCCCCeeEEEeecCCC
Q 038343 22 SNKSCFEVGSGVGLVGICLAHVK----ASKVTLTDGDHLTLANM--RSNLELNQLSTDTSLLESYEDPNVVQCVHLPWES 95 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~g----~~~v~~tD~~~~~l~~~--~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~ 95 (191)
++.+|||.|||+|.+.+.+++.. ..+++++|+++.++..+ +.|+..|...... ....+...++..
T Consensus 321 ~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi---------~~~~I~~dD~L~ 391 (878)
T 3s1s_A 321 EDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSSN---------NAPTITGEDVCS 391 (878)
T ss_dssp TTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBTT---------BCCEEECCCGGG
T ss_pred CCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcCC---------CcceEEecchhc
Confidence 57799999999998888777642 23799999999999998 6666554432110 111223333222
Q ss_pred CCcCCCCCCCCCEEEEcccccCCC-----------------------------ChHHHHHHHHHHhccCCCCccc
Q 038343 96 ASESGLSAFVPEIILGADILYDRS-----------------------------CFPDLVRILAILLNRRKSVSSS 141 (191)
Q Consensus 96 ~~~~~~~~~~fDvIi~~d~ly~~~-----------------------------~~~~ll~~l~~ll~~~g~~~~~ 141 (191)
.. .....+||+||++..+.... ....++....++|+++|....+
T Consensus 392 ~~--~~~~~kFDVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKpGGrLAfI 464 (878)
T 3s1s_A 392 LN--PEDFANVSVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQDGTVISAI 464 (878)
T ss_dssp CC--GGGGTTEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCTTCEEEEE
T ss_pred cc--ccccCCCCEEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcCCCcEEEEE
Confidence 11 11235799999987763211 1334677788899999866543
|
| >3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A* | Back alignment and structure |
|---|
Probab=98.20 E-value=4.2e-06 Score=64.93 Aligned_cols=111 Identities=13% Similarity=-0.031 Sum_probs=66.5
Q ss_pred cHHHHHHHHhhCCCCCCCCcEEEeCCCccHHHHHHHhc-CCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCC
Q 038343 6 SSLLLSEFILSFPEIFSNKSCFEVGSGVGLVGICLAHV-KASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPN 84 (191)
Q Consensus 6 ~a~~L~~~l~~~~~~~~~~~VLElG~GtG~~~~~la~~-g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~ 84 (191)
++..|.+...+ ....++.+|||||||+|-.+.+++.. ++.+|++.|+...+. ........ ...
T Consensus 59 aA~KL~ei~ek-~~l~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~--------~~pi~~~~-------~g~ 122 (277)
T 3evf_A 59 GTAKLRWFHER-GYVKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGH--------EKPMNVQS-------LGW 122 (277)
T ss_dssp HHHHHHHHHHT-TSSCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTC--------CCCCCCCB-------TTG
T ss_pred HHHHHHHHHHh-CCCCCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCc--------ccccccCc-------CCC
Confidence 68889888877 44456779999999999999987764 666888888863210 00000000 000
Q ss_pred eeEEEeecCCCCCcCCCCCCCCCEEEEcccccCCCC--hH-----HHHHHHHHHhccC-C
Q 038343 85 VVQCVHLPWESASESGLSAFVPEIILGADILYDRSC--FP-----DLVRILAILLNRR-K 136 (191)
Q Consensus 85 ~i~~~~ldw~~~~~~~~~~~~fDvIi~~d~ly~~~~--~~-----~ll~~l~~ll~~~-g 136 (191)
++....-+.+ ...+...+||+|++ |+-.+... .+ .|++...++|+|+ |
T Consensus 123 ~ii~~~~~~d---v~~l~~~~~DlVls-D~apnsG~~~~D~~rs~~LL~~a~~~LkpG~G 178 (277)
T 3evf_A 123 NIITFKDKTD---IHRLEPVKCDTLLC-DIGESSSSSVTEGERTVRVLDTVEKWLACGVD 178 (277)
T ss_dssp GGEEEECSCC---TTTSCCCCCSEEEE-CCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCS
T ss_pred CeEEEeccce---ehhcCCCCccEEEe-cCccCcCchHHHHHHHHHHHHHHHHHhCCCCC
Confidence 1222222221 12345568999998 55444221 11 3567788999999 6
|
| >2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str} | Back alignment and structure |
|---|
Probab=98.16 E-value=1.5e-06 Score=61.15 Aligned_cols=49 Identities=22% Similarity=0.194 Sum_probs=39.3
Q ss_pred HHHHHHHhhCCCCCCCCcEEEeCCCcc-HHHHHHHh-cCCCeEEEEcCChHHHH
Q 038343 8 LLLSEFILSFPEIFSNKSCFEVGSGVG-LVGICLAH-VKASKVTLTDGDHLTLA 59 (191)
Q Consensus 8 ~~L~~~l~~~~~~~~~~~VLElG~GtG-~~~~~la~-~g~~~v~~tD~~~~~l~ 59 (191)
..|++|+.++.. ++.+|||+|||.| -.+..++. .|. .|++||+++.+++
T Consensus 23 e~LaeYI~~~~~--~~~rVlEVG~G~g~~vA~~La~~~g~-~V~atDInp~Av~ 73 (153)
T 2k4m_A 23 NDLAVYIIRCSG--PGTRVVEVGAGRFLYVSDYIRKHSKV-DLVLTDIKPSHGG 73 (153)
T ss_dssp HHHHHHHHHHSC--SSSEEEEETCTTCCHHHHHHHHHSCC-EEEEECSSCSSTT
T ss_pred HHHHHHHHhcCC--CCCcEEEEccCCChHHHHHHHHhCCC-eEEEEECCccccc
Confidence 357888876542 4569999999999 59999987 877 8999999987655
|
| >3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=98.14 E-value=3e-06 Score=72.34 Aligned_cols=104 Identities=7% Similarity=-0.042 Sum_probs=68.9
Q ss_pred cEEEeCCCccHHHHHHHhc--------C--------CCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEE
Q 038343 25 SCFEVGSGVGLVGICLAHV--------K--------ASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQC 88 (191)
Q Consensus 25 ~VLElG~GtG~~~~~la~~--------g--------~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~ 88 (191)
+|||.+||||.+.+.+++. + ...++++|+++.++..++.|+..+++.. .+.+
T Consensus 247 ~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~------------~i~i 314 (544)
T 3khk_A 247 RVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRGIDF------------NFGK 314 (544)
T ss_dssp EEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTTCCC------------BCCS
T ss_pred eEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhCCCc------------ccce
Confidence 8999999999766654321 0 2389999999999999999999887541 1211
Q ss_pred EeecCCCCCcCCCCCCCCCEEEEcccccCCC-----------------------------ChHHHHHHHHHHhccCCCCc
Q 038343 89 VHLPWESASESGLSAFVPEIILGADILYDRS-----------------------------CFPDLVRILAILLNRRKSVS 139 (191)
Q Consensus 89 ~~ldw~~~~~~~~~~~~fDvIi~~d~ly~~~-----------------------------~~~~ll~~l~~ll~~~g~~~ 139 (191)
...|.-.. ......+||+||++.++-... ..-.++..+.++|+++|...
T Consensus 315 ~~gDtL~~--~~~~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~a 392 (544)
T 3khk_A 315 KNADSFLD--DQHPDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLHMLYHLAPTGSMA 392 (544)
T ss_dssp SSCCTTTS--CSCTTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHHHHHTEEEEEEEE
T ss_pred eccchhcC--cccccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHHHHHHHhccCceEE
Confidence 22222111 112346899999976654210 00157888899999998766
Q ss_pred ccc
Q 038343 140 SSR 142 (191)
Q Consensus 140 ~~~ 142 (191)
.+.
T Consensus 393 iVl 395 (544)
T 3khk_A 393 LLL 395 (544)
T ss_dssp EEE
T ss_pred EEe
Confidence 553
|
| >3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.12 E-value=3.3e-05 Score=60.75 Aligned_cols=105 Identities=15% Similarity=0.048 Sum_probs=72.5
Q ss_pred CCCcEEEeCCCccHHHHHHHhc-CCCeEEEEcCChHHHHHHHHHHHH-hcCCCCcccccccCCCCeeEEEeecCCCCCcC
Q 038343 22 SNKSCFEVGSGVGLVGICLAHV-KASKVTLTDGDHLTLANMRSNLEL-NQLSTDTSLLESYEDPNVVQCVHLPWESASES 99 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~-g~~~v~~tD~~~~~l~~~~~n~~~-n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~ 99 (191)
+.++||=||.|.|.+...+.+. +..+|+.+|+++.+++.+++-+.. +....+ ..++++...|-......
T Consensus 83 ~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~---------dpRv~v~~~Dg~~~l~~ 153 (294)
T 3o4f_A 83 HAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYD---------DPRFKLVIDDGVNFVNQ 153 (294)
T ss_dssp CCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGG---------CTTEEEEESCTTTTTSC
T ss_pred CCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccC---------CCcEEEEechHHHHHhh
Confidence 3569999999999888866665 456999999999999999887643 221111 14677777775544322
Q ss_pred CCCCCCCCEEEE--cccccCCC--ChHHHHHHHHHHhccCCC
Q 038343 100 GLSAFVPEIILG--ADILYDRS--CFPDLVRILAILLNRRKS 137 (191)
Q Consensus 100 ~~~~~~fDvIi~--~d~ly~~~--~~~~ll~~l~~ll~~~g~ 137 (191)
...+||+||. .|...... .-..+.+.+++.|+|+|-
T Consensus 154 --~~~~yDvIi~D~~dp~~~~~~L~t~eFy~~~~~~L~p~Gv 193 (294)
T 3o4f_A 154 --TSQTFDVIISDCTDPIGPGESLFTSAFYEGCKRCLNPGGI 193 (294)
T ss_dssp --SSCCEEEEEESCCCCCCTTCCSSCCHHHHHHHHTEEEEEE
T ss_pred --ccccCCEEEEeCCCcCCCchhhcCHHHHHHHHHHhCCCCE
Confidence 3458999996 22222111 246789999999999974
|
| >3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus} | Back alignment and structure |
|---|
Probab=98.09 E-value=3.1e-05 Score=60.14 Aligned_cols=50 Identities=16% Similarity=-0.031 Sum_probs=40.4
Q ss_pred ccHHHHHHHHhhCCCCCCCCcEEEeCCCccHHHHHHHh-cCCCeEEEEcCCh
Q 038343 5 PSSLLLSEFILSFPEIFSNKSCFEVGSGVGLVGICLAH-VKASKVTLTDGDH 55 (191)
Q Consensus 5 ~~a~~L~~~l~~~~~~~~~~~VLElG~GtG~~~~~la~-~g~~~v~~tD~~~ 55 (191)
.++..|.+...+. ...++.+|||||||+|-.+.+++. .++.+|+++|+..
T Consensus 74 RAAfKL~ei~eK~-~Lk~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~ 124 (282)
T 3gcz_A 74 RGSAKLRWMEERG-YVKPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGV 124 (282)
T ss_dssp THHHHHHHHHHTT-SCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCC
T ss_pred HHHHHHHHHHHhc-CCCCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEecc
Confidence 3688888887765 455777999999999999998774 5667899999864
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=98.05 E-value=9e-06 Score=64.11 Aligned_cols=47 Identities=11% Similarity=0.005 Sum_probs=42.8
Q ss_pred CCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHh
Q 038343 21 FSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELN 68 (191)
Q Consensus 21 ~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n 68 (191)
.++..|||++||+|.+++.++++|. +++++|+++.+++.+++++...
T Consensus 234 ~~~~~vlD~f~GsGt~~~~a~~~g~-~~~g~e~~~~~~~~a~~r~~~~ 280 (297)
T 2zig_A 234 FVGDVVLDPFAGTGTTLIAAARWGR-RALGVELVPRYAQLAKERFARE 280 (297)
T ss_dssp CTTCEEEETTCTTTHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHH
T ss_pred CCCCEEEECCCCCCHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHHHh
Confidence 3677999999999999999999986 8999999999999999998764
|
| >4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A* | Back alignment and structure |
|---|
Probab=97.99 E-value=3.5e-05 Score=62.39 Aligned_cols=93 Identities=14% Similarity=0.052 Sum_probs=61.0
Q ss_pred cHHHHHHHHhhCCCCCCCCcEEEeCCCccHHHHHHHhcCC-CeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCC
Q 038343 6 SSLLLSEFILSFPEIFSNKSCFEVGSGVGLVGICLAHVKA-SKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPN 84 (191)
Q Consensus 6 ~a~~L~~~l~~~~~~~~~~~VLElG~GtG~~~~~la~~g~-~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~ 84 (191)
+|+..+..+. ..+|.+|||+.||.|.=+..++..+. ..+++.|+++.-++.+++|++..+..... ...
T Consensus 136 aS~l~~~~L~----~~pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~-------~~~ 204 (359)
T 4fzv_A 136 ASLLPVLALG----LQPGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIR-------DGN 204 (359)
T ss_dssp GGHHHHHHHC----CCTTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHSCTTTT-------TSS
T ss_pred HHHHHHHHhC----CCCCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhhhhhhc-------cCC
Confidence 4555554442 22677999999999977776666544 37999999999999999999887653211 012
Q ss_pred eeEEEeecCCCCCcCCCCCCCCCEEEE
Q 038343 85 VVQCVHLPWESASESGLSAFVPEIILG 111 (191)
Q Consensus 85 ~i~~~~ldw~~~~~~~~~~~~fDvIi~ 111 (191)
++.+...|..... ....+.||.|+.
T Consensus 205 ~v~v~~~D~~~~~--~~~~~~fD~VLl 229 (359)
T 4fzv_A 205 QVRVTSWDGRKWG--ELEGDTYDRVLV 229 (359)
T ss_dssp SEEEECCCGGGHH--HHSTTCEEEEEE
T ss_pred ceEEEeCchhhcc--hhccccCCEEEE
Confidence 4555555432211 123357999996
|
| >3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A* | Back alignment and structure |
|---|
Probab=97.85 E-value=4.5e-05 Score=59.64 Aligned_cols=111 Identities=9% Similarity=-0.088 Sum_probs=67.2
Q ss_pred cHHHHHHHHhhCCCCCCCCcEEEeCCCccHHHHHHHh-cCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCC
Q 038343 6 SSLLLSEFILSFPEIFSNKSCFEVGSGVGLVGICLAH-VKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPN 84 (191)
Q Consensus 6 ~a~~L~~~l~~~~~~~~~~~VLElG~GtG~~~~~la~-~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~ 84 (191)
++..|.+...+ .-..++++||||||++|..+.++++ .++..|+++|+...+. ........ ...
T Consensus 66 aa~KL~ei~ek-~l~~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~~~--------~~P~~~~~-------~~~ 129 (300)
T 3eld_A 66 GAAKIRWLHER-GYLRITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGH--------EKPIHMQT-------LGW 129 (300)
T ss_dssp THHHHHHHHHH-TSCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTS--------CCCCCCCB-------TTG
T ss_pred HHHHHHHHHHh-CCCCCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEeccccc--------cccccccc-------cCC
Confidence 68888888877 4445788999999999999998886 4666899999853210 00000000 000
Q ss_pred eeEEEeecCCCCCcCCCCCCCCCEEEEcccccCCCCh-------HHHHHHHHHHhccC-C
Q 038343 85 VVQCVHLPWESASESGLSAFVPEIILGADILYDRSCF-------PDLVRILAILLNRR-K 136 (191)
Q Consensus 85 ~i~~~~ldw~~~~~~~~~~~~fDvIi~~d~ly~~~~~-------~~ll~~l~~ll~~~-g 136 (191)
.+....-. .....+...++|+|++ |+-.+.... -.|++....+|+|| |
T Consensus 130 ~iv~~~~~---~di~~l~~~~~DlVls-D~APnsG~~~~D~~rs~~LL~~A~~~LkpG~G 185 (300)
T 3eld_A 130 NIVKFKDK---SNVFTMPTEPSDTLLC-DIGESSSNPLVERDRTMKVLENFERWKHVNTE 185 (300)
T ss_dssp GGEEEECS---CCTTTSCCCCCSEEEE-CCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCC
T ss_pred ceEEeecC---ceeeecCCCCcCEEee-cCcCCCCCHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 11111100 0111234568999998 665553221 34577778899999 6
|
| >3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus} | Back alignment and structure |
|---|
Probab=97.82 E-value=4.9e-05 Score=59.38 Aligned_cols=119 Identities=14% Similarity=0.041 Sum_probs=70.1
Q ss_pred cHHHHHHHHhhCCCCCCCCcEEEeCCCccHHHHHHHh-cCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCC
Q 038343 6 SSLLLSEFILSFPEIFSNKSCFEVGSGVGLVGICLAH-VKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPN 84 (191)
Q Consensus 6 ~a~~L~~~l~~~~~~~~~~~VLElG~GtG~~~~~la~-~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~ 84 (191)
++..|.+...+ ....++.+||||||++|-.+.+++. .|+++|++.|+... +... +..-+.-.+ +
T Consensus 79 ~~~KL~ei~~~-~~l~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~------------~he~-P~~~~ql~w-~ 143 (321)
T 3lkz_A 79 GTAKLRWLVER-RFLEPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGP------------GHEE-PQLVQSYGW-N 143 (321)
T ss_dssp HHHHHHHHHHT-TSCCCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCST------------TSCC-CCCCCBTTG-G
T ss_pred HHHHHHHHHHh-cCCCCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCC------------CccC-cchhhhcCC-c
Confidence 57778776666 3445777999999999999996555 57778999998532 1110 000000000 1
Q ss_pred eeEEEee-cCCCCCcCCCCCCCCCEEEEcccccCCCChH-------HHHHHHHHHhccC-CCCccccccC
Q 038343 85 VVQCVHL-PWESASESGLSAFVPEIILGADILYDRSCFP-------DLVRILAILLNRR-KSVSSSRKES 145 (191)
Q Consensus 85 ~i~~~~l-dw~~~~~~~~~~~~fDvIi~~d~ly~~~~~~-------~ll~~l~~ll~~~-g~~~~~~~~~ 145 (191)
.+.+... |.. .++..++|+|+| |+=....... .+|+.+.++|+++ +..++-.++|
T Consensus 144 lV~~~~~~Dv~-----~l~~~~~D~ivc-DigeSs~~~~ve~~Rtl~vLel~~~wL~~~~~~f~~KVl~p 207 (321)
T 3lkz_A 144 IVTMKSGVDVF-----YRPSECCDTLLC-DIGESSSSAEVEEHRTIRVLEMVEDWLHRGPREFCVKVLCP 207 (321)
T ss_dssp GEEEECSCCTT-----SSCCCCCSEEEE-CCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCCEEEEEESCT
T ss_pred ceEEEeccCHh-----hCCCCCCCEEEE-ECccCCCChhhhhhHHHHHHHHHHHHhccCCCcEEEEEcCC
Confidence 1223322 221 223357999987 6654333311 1466667889988 6777777777
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=97.75 E-value=5.8e-05 Score=58.31 Aligned_cols=48 Identities=13% Similarity=0.032 Sum_probs=42.4
Q ss_pred CCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhc
Q 038343 21 FSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQ 69 (191)
Q Consensus 21 ~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~ 69 (191)
.++..|||.+||+|.+++.+.++|. +++++|+++..++.++++++.++
T Consensus 211 ~~~~~vlD~f~GsGtt~~~a~~~gr-~~ig~e~~~~~~~~~~~r~~~~~ 258 (260)
T 1g60_A 211 NPNDLVLDCFMGSGTTAIVAKKLGR-NFIGCDMNAEYVNQANFVLNQLE 258 (260)
T ss_dssp CTTCEEEESSCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHC--
T ss_pred CCCCEEEECCCCCCHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHHhcc
Confidence 3677999999999999999999986 99999999999999999987765
|
| >2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.64 E-value=4e-05 Score=59.27 Aligned_cols=116 Identities=13% Similarity=-0.049 Sum_probs=62.9
Q ss_pred CCCcEEEeCCCccHHHHHHHhc-------CC------CeEEEEcCCh---HHHH-----------HHHHHHHHhcCCCCc
Q 038343 22 SNKSCFEVGSGVGLVGICLAHV-------KA------SKVTLTDGDH---LTLA-----------NMRSNLELNQLSTDT 74 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~-------g~------~~v~~tD~~~---~~l~-----------~~~~n~~~n~~~~~~ 74 (191)
+..+|||+|+|+|...+.+++. +. .+|+.+|..| +.+. .++.+++........
T Consensus 60 ~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~g 139 (257)
T 2qy6_A 60 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG 139 (257)
T ss_dssp SEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCSE
T ss_pred CCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccccccc
Confidence 3458999999999887765432 22 3899999876 4443 344444432110000
Q ss_pred cc-ccccCCCCeeEEEeecCCCCCcCCCCC---CCCCEEEEcccccCCCC----hHHHHHHHHHHhccCCCCc
Q 038343 75 SL-LESYEDPNVVQCVHLPWESASESGLSA---FVPEIILGADILYDRSC----FPDLVRILAILLNRRKSVS 139 (191)
Q Consensus 75 ~~-~~~~~~~~~i~~~~ldw~~~~~~~~~~---~~fDvIi~~d~ly~~~~----~~~ll~~l~~ll~~~g~~~ 139 (191)
.. ....+...++.+...|..+.... ... ..||+|+. |.+--... .+.+++.+.++|+|||...
T Consensus 140 ~~r~~~~~~~~~l~l~~GDa~~~l~~-~~~~~~~~~D~ifl-D~fsp~~~p~lw~~~~l~~l~~~L~pGG~l~ 210 (257)
T 2qy6_A 140 CHRLLLDEGRVTLDLWFGDINELISQ-LDDSLNQKVDAWFL-DGFAPAKNPDMWTQNLFNAMARLARPGGTLA 210 (257)
T ss_dssp EEEEEEC--CEEEEEEESCHHHHGGG-SCGGGTTCEEEEEE-CSSCTTTCGGGCCHHHHHHHHHHEEEEEEEE
T ss_pred hhheeccCCceEEEEEECcHHHHHhh-cccccCCeEEEEEE-CCCCcccChhhcCHHHHHHHHHHcCCCcEEE
Confidence 00 00000112344555554332111 111 37999997 55432212 4679999999999997543
|
| >4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A* | Back alignment and structure |
|---|
Probab=97.60 E-value=0.00037 Score=56.37 Aligned_cols=103 Identities=15% Similarity=0.016 Sum_probs=67.2
Q ss_pred cHHHHHHHHhhC-------CCCCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCccccc
Q 038343 6 SSLLLSEFILSF-------PEIFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLE 78 (191)
Q Consensus 6 ~a~~L~~~l~~~-------~~~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~ 78 (191)
++..|.+.+... ....+|.+||||||++|-.+..+++.|. +|+++|..+ +-. .+..+
T Consensus 188 a~lKL~Ea~~~F~~~~~~~~~l~~G~~vlDLGAaPGGWT~~l~~rg~-~V~aVD~~~-l~~----~l~~~---------- 251 (375)
T 4auk_A 188 STLKLEEAFHVFIPADEWDERLANGMWAVDLGACPGGWTYQLVKRNM-WVYSVDNGP-MAQ----SLMDT---------- 251 (375)
T ss_dssp THHHHHHHHHHHSCGGGHHHHSCTTCEEEEETCTTCHHHHHHHHTTC-EEEEECSSC-CCH----HHHTT----------
T ss_pred HHHHHHHHHHhccchhhhhccCCCCCEEEEeCcCCCHHHHHHHHCCC-EEEEEEhhh-cCh----hhccC----------
Confidence 355666654332 1134788999999999999999999987 899999753 111 11111
Q ss_pred ccCCCCeeEEEeecCCCCCcCCCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCC
Q 038343 79 SYEDPNVVQCVHLPWESASESGLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRK 136 (191)
Q Consensus 79 ~~~~~~~i~~~~ldw~~~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g 136 (191)
.++.+...|-.... ....+||+|++ |+.. ....++..+.+++..+-
T Consensus 252 -----~~V~~~~~d~~~~~---~~~~~~D~vvs-Dm~~---~p~~~~~l~~~wl~~~~ 297 (375)
T 4auk_A 252 -----GQVTWLREDGFKFR---PTRSNISWMVC-DMVE---KPAKVAALMAQWLVNGW 297 (375)
T ss_dssp -----TCEEEECSCTTTCC---CCSSCEEEEEE-CCSS---CHHHHHHHHHHHHHTTS
T ss_pred -----CCeEEEeCcccccc---CCCCCcCEEEE-cCCC---ChHHhHHHHHHHHhccc
Confidence 24666665543322 23357999987 6654 35677778888887774
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=97.55 E-value=1.4e-05 Score=78.65 Aligned_cols=99 Identities=17% Similarity=0.017 Sum_probs=46.3
Q ss_pred CCCcEEEeCCCccHHHH-HHHhcC-----CCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCC
Q 038343 22 SNKSCFEVGSGVGLVGI-CLAHVK-----ASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWES 95 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~-~la~~g-----~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~ 95 (191)
+..+|||+|+|+|.... .+..++ ..+|++||+++...+.+++.++... +....+|..+
T Consensus 1240 ~~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~~d----------------i~~~~~d~~~ 1303 (2512)
T 2vz8_A 1240 PKMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQLH----------------VTQGQWDPAN 1303 (2512)
T ss_dssp SEEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHHHT----------------EEEECCCSSC
T ss_pred CCceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhhcc----------------cccccccccc
Confidence 45699999999994433 333332 2489999999887777766554321 2222222211
Q ss_pred CCcCCCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCC
Q 038343 96 ASESGLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSV 138 (191)
Q Consensus 96 ~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~ 138 (191)
. ..+....||+||++++++...+....++.++++|+|+|..
T Consensus 1304 ~--~~~~~~~ydlvia~~vl~~t~~~~~~l~~~~~lL~p~G~l 1344 (2512)
T 2vz8_A 1304 P--APGSLGKADLLVCNCALATLGDPAVAVGNMAATLKEGGFL 1344 (2512)
T ss_dssp C--CC-----CCEEEEECC--------------------CCEE
T ss_pred c--ccCCCCceeEEEEcccccccccHHHHHHHHHHhcCCCcEE
Confidence 1 0112346999999999998888999999999999999853
|
| >3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A* | Back alignment and structure |
|---|
Probab=97.48 E-value=7e-05 Score=60.81 Aligned_cols=109 Identities=11% Similarity=0.093 Sum_probs=66.9
Q ss_pred CCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHh-cCCCCcccccccCCCCeeEEEeecCCCCCcCC
Q 038343 22 SNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELN-QLSTDTSLLESYEDPNVVQCVHLPWESASESG 100 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n-~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~ 100 (191)
+.++||=||.|.|.+...+.+....+|+.+|+++.+++.+++-+... +...+. ....++++...|.-......
T Consensus 205 ~pkrVLIIGgGdG~~~revlkh~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~------pr~~rv~vii~Da~~fl~~~ 278 (381)
T 3c6k_A 205 TGKDVLILGGGDGGILCEIVKLKPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDN------LKGDCYQVLIEDCIPVLKRY 278 (381)
T ss_dssp TTCEEEEEECTTCHHHHHHHTTCCSEEEEEESCHHHHHHHHHHCCC----CCSS------SEETTEEEEESCHHHHHHHH
T ss_pred CCCeEEEECCCcHHHHHHHHhcCCceeEEEccCHHHHHHHHhhchhhhhhhhcc------ccccceeeehHHHHHHHHhh
Confidence 46799999999998888777776779999999999999998754211 100000 00123444444321111000
Q ss_pred -CCCCCCCEEEEcccccCCC-----------ChHHHHHHHHHHhccCCC
Q 038343 101 -LSAFVPEIILGADILYDRS-----------CFPDLVRILAILLNRRKS 137 (191)
Q Consensus 101 -~~~~~fDvIi~~d~ly~~~-----------~~~~ll~~l~~ll~~~g~ 137 (191)
-...+||+||. |+.-.+. -...+++.+++.|+|+|.
T Consensus 279 ~~~~~~yDvIIv-Dl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GV 326 (381)
T 3c6k_A 279 AKEGREFDYVIN-DLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGK 326 (381)
T ss_dssp HHHTCCEEEEEE-ECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEE
T ss_pred hhccCceeEEEE-CCCCCcccCcccCcchHHHHHHHHHHHHHhcCCCCE
Confidence 02357999997 4432110 024667889999999974
|
| >3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.48 E-value=0.00018 Score=58.46 Aligned_cols=122 Identities=13% Similarity=-0.064 Sum_probs=69.0
Q ss_pred CCcEEEeCCCccHHHHHHHhc------------C----CCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCee
Q 038343 23 NKSCFEVGSGVGLVGICLAHV------------K----ASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVV 86 (191)
Q Consensus 23 ~~~VLElG~GtG~~~~~la~~------------g----~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i 86 (191)
..+|+|||||+|-.++.+... + .-+|++.|+.......+=+.+.......... ..........
T Consensus 53 ~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~-~~~~~~~~~~ 131 (374)
T 3b5i_A 53 PFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCME-ECLAADGNRS 131 (374)
T ss_dssp CEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--C-CC---CCCBC
T ss_pred ceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchh-hhccccCCCc
Confidence 468999999999887765221 1 1278888875555544433332211000000 0000000011
Q ss_pred EEEeecCCCCCcCCCCCCCCCEEEEcccccCCC--------------------------------------ChHHHHHHH
Q 038343 87 QCVHLPWESASESGLSAFVPEIILGADILYDRS--------------------------------------CFPDLVRIL 128 (191)
Q Consensus 87 ~~~~ldw~~~~~~~~~~~~fDvIi~~d~ly~~~--------------------------------------~~~~ll~~l 128 (191)
.+....-+..-...++++++|+|+++-++++.. ++..+|+..
T Consensus 132 ~f~~gvpgSFy~rlfP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~r 211 (374)
T 3b5i_A 132 YFVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRAR 211 (374)
T ss_dssp SEEEEEESCTTSCCSCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEecChhhhcccCCCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 122222233323346778999999999999865 344568889
Q ss_pred HHHhccCCCCccccccC
Q 038343 129 AILLNRRKSVSSSRKES 145 (191)
Q Consensus 129 ~~ll~~~g~~~~~~~~~ 145 (191)
.+.|+|||.....+...
T Consensus 212 a~eL~pGG~mvl~~~gr 228 (374)
T 3b5i_A 212 AAEVKRGGAMFLVCLGR 228 (374)
T ss_dssp HHHEEEEEEEEEEEEEC
T ss_pred HHHhCCCCEEEEEEecC
Confidence 99999998776655543
|
| >2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus} | Back alignment and structure |
|---|
Probab=97.28 E-value=0.00027 Score=55.26 Aligned_cols=99 Identities=15% Similarity=0.062 Sum_probs=65.0
Q ss_pred CCcEEEeCCCccHHHHHHHhc----C--CCeEEEEcCCh--------------------------HHHHHHHHHHHHhcC
Q 038343 23 NKSCFEVGSGVGLVGICLAHV----K--ASKVTLTDGDH--------------------------LTLANMRSNLELNQL 70 (191)
Q Consensus 23 ~~~VLElG~GtG~~~~~la~~----g--~~~v~~tD~~~--------------------------~~l~~~~~n~~~n~~ 70 (191)
..+|||+|+..|..++.++.. + ..++++.|..+ ..++.+++|++..++
T Consensus 107 pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~gl 186 (282)
T 2wk1_A 107 PGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNYDL 186 (282)
T ss_dssp CCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHTTC
T ss_pred CCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHcCC
Confidence 448999999999888876542 1 34899999532 136778889888775
Q ss_pred CCCcccccccCCCCeeEEEeecCCCCCcCCCCCCCCCEEEEccc-ccCCCChHHHHHHHHHHhccCC
Q 038343 71 STDTSLLESYEDPNVVQCVHLPWESASESGLSAFVPEIILGADI-LYDRSCFPDLVRILAILLNRRK 136 (191)
Q Consensus 71 ~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~~~~~~fDvIi~~d~-ly~~~~~~~ll~~l~~ll~~~g 136 (191)
.. .++.+...+..+.... ....+||+|.. |+ .| ......++.+..+|+|||
T Consensus 187 ~~-----------~~I~li~Gda~etL~~-~~~~~~d~vfI-DaD~y--~~~~~~Le~~~p~L~pGG 238 (282)
T 2wk1_A 187 LD-----------EQVRFLPGWFKDTLPT-APIDTLAVLRM-DGDLY--ESTWDTLTNLYPKVSVGG 238 (282)
T ss_dssp CS-----------TTEEEEESCHHHHSTT-CCCCCEEEEEE-CCCSH--HHHHHHHHHHGGGEEEEE
T ss_pred Cc-----------CceEEEEeCHHHHHhh-CCCCCEEEEEE-cCCcc--ccHHHHHHHHHhhcCCCE
Confidence 21 3577777766443222 33457999876 32 11 123456777888888886
|
| >3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157} | Back alignment and structure |
|---|
Probab=97.10 E-value=0.00076 Score=54.89 Aligned_cols=42 Identities=17% Similarity=0.146 Sum_probs=37.3
Q ss_pred CcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHH
Q 038343 24 KSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNL 65 (191)
Q Consensus 24 ~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~ 65 (191)
.+|+||.||+|.+++-+.+.|...|.++|+++.+++..+.|.
T Consensus 3 ~~vidLFsG~GGlslG~~~aG~~~v~avE~d~~a~~t~~~N~ 44 (376)
T 3g7u_A 3 LNVIDLFSGVGGLSLGAARAGFDVKMAVEIDQHAINTHAINF 44 (376)
T ss_dssp CEEEEETCTTSHHHHHHHHHTCEEEEEECSCHHHHHHHHHHC
T ss_pred CeEEEEccCcCHHHHHHHHCCCcEEEEEeCCHHHHHHHHHhC
Confidence 489999999999999888889877889999999988887764
|
| >2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A* | Back alignment and structure |
|---|
Probab=97.08 E-value=0.0015 Score=53.14 Aligned_cols=111 Identities=14% Similarity=-0.042 Sum_probs=65.4
Q ss_pred CCcEEEeCCCccHHHHHHHhc--------------C---C-CeEEEEcCChHHH-------HHHHHHHHH-hcCCCCccc
Q 038343 23 NKSCFEVGSGVGLVGICLAHV--------------K---A-SKVTLTDGDHLTL-------ANMRSNLEL-NQLSTDTSL 76 (191)
Q Consensus 23 ~~~VLElG~GtG~~~~~la~~--------------g---~-~~v~~tD~~~~~l-------~~~~~n~~~-n~~~~~~~~ 76 (191)
..+|+||||++|-.++.+... + + -+|++.|+...-. ....+.+.. ++..
T Consensus 53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~~g~~----- 127 (384)
T 2efj_A 53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKENGRK----- 127 (384)
T ss_dssp EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHTCCC-----
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhhccCC-----
Confidence 468999999999877754432 1 1 2788999842111 111111111 1110
Q ss_pred ccccCCCCeeEEEeecCCCCCcCCCCCCCCCEEEEcccccCCCChH----------------------------------
Q 038343 77 LESYEDPNVVQCVHLPWESASESGLSAFVPEIILGADILYDRSCFP---------------------------------- 122 (191)
Q Consensus 77 ~~~~~~~~~i~~~~ldw~~~~~~~~~~~~fDvIi~~d~ly~~~~~~---------------------------------- 122 (191)
....+....-+..-...++++++|+|+++-++++....+
T Consensus 128 -------~~~~f~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf 200 (384)
T 2efj_A 128 -------IGSCLIGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQF 200 (384)
T ss_dssp -------TTSEEEEECCSCTTSCCSCTTCEEEEEEESCTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHH
T ss_pred -------CCceEEEecchhhhhccCCCCceEEEEecceeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHH
Confidence 012333333344434456788999999999999854432
Q ss_pred -----HHHHHHHHHhccCCCCccccccC
Q 038343 123 -----DLVRILAILLNRRKSVSSSRKES 145 (191)
Q Consensus 123 -----~ll~~l~~ll~~~g~~~~~~~~~ 145 (191)
.+|+...+.|+|||.....+...
T Consensus 201 ~~D~~~FL~~Ra~eL~pGG~mvl~~~gr 228 (384)
T 2efj_A 201 TKDFTTFLRIHSEELISRGRMLLTFICK 228 (384)
T ss_dssp HHHHHHHHHHHHHHEEEEEEEEEEEECC
T ss_pred HHHHHHHHHHHHHHhccCCeEEEEEecC
Confidence 12666789999998766555443
|
| >1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26 | Back alignment and structure |
|---|
Probab=97.04 E-value=0.00026 Score=56.92 Aligned_cols=43 Identities=23% Similarity=0.184 Sum_probs=37.7
Q ss_pred CcEEEeCCCccHHHHHHHhcC--CCeEEEEcCChHHHHHHHHHHH
Q 038343 24 KSCFEVGSGVGLVGICLAHVK--ASKVTLTDGDHLTLANMRSNLE 66 (191)
Q Consensus 24 ~~VLElG~GtG~~~~~la~~g--~~~v~~tD~~~~~l~~~~~n~~ 66 (191)
.+|+||.||+|.+++.+.+.| ...|.++|+++.+++..+.|..
T Consensus 3 ~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~~ 47 (343)
T 1g55_A 3 LRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFP 47 (343)
T ss_dssp EEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCT
T ss_pred CeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhcc
Confidence 479999999999999888888 4589999999999998888753
|
| >3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=96.94 E-value=0.0035 Score=53.24 Aligned_cols=93 Identities=13% Similarity=0.013 Sum_probs=57.2
Q ss_pred HHHHHhhCCCCCCCCcEEEeCCCccHHHHHHHh----cC----------CCeEEEEcCChHHHHHHHHHHHHhcCCCCcc
Q 038343 10 LSEFILSFPEIFSNKSCFEVGSGVGLVGICLAH----VK----------ASKVTLTDGDHLTLANMRSNLELNQLSTDTS 75 (191)
Q Consensus 10 L~~~l~~~~~~~~~~~VLElG~GtG~~~~~la~----~g----------~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~ 75 (191)
+++++.......++.+|+|-.||||.+-+.+.. .. ...+++.|+++.+...++.|+-.++...
T Consensus 205 Vv~lmv~l~~p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~lhg~~~--- 281 (530)
T 3ufb_A 205 VVRFMVEVMDPQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLLHGLEY--- 281 (530)
T ss_dssp HHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHHHTCSC---
T ss_pred HHHHHHHhhccCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHhcCCcc---
Confidence 334444332333567999999999966554332 11 1369999999999999999998887542
Q ss_pred cccccCCCCeeEEEeecCCCCC-cCCCCCCCCCEEEEcccc
Q 038343 76 LLESYEDPNVVQCVHLPWESAS-ESGLSAFVPEIILGADIL 115 (191)
Q Consensus 76 ~~~~~~~~~~i~~~~ldw~~~~-~~~~~~~~fDvIi~~d~l 115 (191)
..+...|--... .......+||+||++.++
T Consensus 282 ----------~~I~~~dtL~~~~~~~~~~~~fD~Il~NPPf 312 (530)
T 3ufb_A 282 ----------PRIDPENSLRFPLREMGDKDRVDVILTNPPF 312 (530)
T ss_dssp ----------CEEECSCTTCSCGGGCCGGGCBSEEEECCCS
T ss_pred ----------ccccccccccCchhhhcccccceEEEecCCC
Confidence 112222211110 111123479999998776
|
| >1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35 | Back alignment and structure |
|---|
Probab=96.90 E-value=0.00054 Score=55.36 Aligned_cols=111 Identities=11% Similarity=-0.061 Sum_probs=69.4
Q ss_pred CCcEEEeCCCccHHHHHHHhc------------C----C-CeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCe
Q 038343 23 NKSCFEVGSGVGLVGICLAHV------------K----A-SKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNV 85 (191)
Q Consensus 23 ~~~VLElG~GtG~~~~~la~~------------g----~-~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~ 85 (191)
..+|+||||++|-.++.+... + + -+|++.|+.......+-+.+...... ..
T Consensus 52 ~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~------------~~ 119 (359)
T 1m6e_X 52 RLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDV------------DG 119 (359)
T ss_dssp EECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSC------------TT
T ss_pred ceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhccc------------CC
Confidence 358999999999776643332 2 1 27889998666666665444321100 01
Q ss_pred eEEEeecCCCCCcCCCCCCCCCEEEEcccccCCCCh---------------------------------HHHHHHHHHHh
Q 038343 86 VQCVHLPWESASESGLSAFVPEIILGADILYDRSCF---------------------------------PDLVRILAILL 132 (191)
Q Consensus 86 i~~~~ldw~~~~~~~~~~~~fDvIi~~d~ly~~~~~---------------------------------~~ll~~l~~ll 132 (191)
..+....-+..-...++++++|+|+++-++++.... ..+|+...+-|
T Consensus 120 ~~f~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL 199 (359)
T 1m6e_X 120 VCFINGVPGSFYGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEV 199 (359)
T ss_dssp CEEEEEEESCSSSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHB
T ss_pred CEEEEecchhhhhccCCCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 122233323333344677899999999999875432 23488999999
Q ss_pred ccCCCCccccccC
Q 038343 133 NRRKSVSSSRKES 145 (191)
Q Consensus 133 ~~~g~~~~~~~~~ 145 (191)
+|||.....+...
T Consensus 200 ~pGG~mvl~~~gr 212 (359)
T 1m6e_X 200 VPGGRMVLTILGR 212 (359)
T ss_dssp CTTCEEEEEEEEC
T ss_pred cCCceEEEEEecC
Confidence 9998766555433
|
| >1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23 | Back alignment and structure |
|---|
Probab=96.79 E-value=0.0017 Score=50.55 Aligned_cols=42 Identities=12% Similarity=-0.002 Sum_probs=36.7
Q ss_pred CCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHH
Q 038343 21 FSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRS 63 (191)
Q Consensus 21 ~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~ 63 (191)
.++..+||.+||.|.-+..+++.+. +|++.|.++.+++.+++
T Consensus 21 ~~gg~~VD~T~G~GGHS~~il~~~g-~VigiD~Dp~Ai~~A~~ 62 (285)
T 1wg8_A 21 RPGGVYVDATLGGAGHARGILERGG-RVIGLDQDPEAVARAKG 62 (285)
T ss_dssp CTTCEEEETTCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHH
T ss_pred CCCCEEEEeCCCCcHHHHHHHHCCC-EEEEEeCCHHHHHHHHh
Confidence 3677999999999999887777754 99999999999998886
|
| >1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=96.70 E-value=0.004 Score=50.17 Aligned_cols=44 Identities=9% Similarity=0.160 Sum_probs=37.1
Q ss_pred CCCcEEEeCCCccHHHHHHHhc-CCCeEEEEcCChHHHHHHHHHH
Q 038343 22 SNKSCFEVGSGVGLVGICLAHV-KASKVTLTDGDHLTLANMRSNL 65 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~-g~~~v~~tD~~~~~l~~~~~n~ 65 (191)
++..|||+|.|.|.++..+... .+++|+++++++..+..+++..
T Consensus 58 ~~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~ 102 (353)
T 1i4w_A 58 EELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKF 102 (353)
T ss_dssp TTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhc
Confidence 3578999999999999977764 3568999999999998887765
|
| >2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ... | Back alignment and structure |
|---|
Probab=96.67 E-value=0.0043 Score=49.45 Aligned_cols=47 Identities=15% Similarity=0.160 Sum_probs=41.3
Q ss_pred CCCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHH
Q 038343 19 EIFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNL 65 (191)
Q Consensus 19 ~~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~ 65 (191)
+...+.+++||.||+|.+++-+.+.|...|.++|+++.+++..+.|.
T Consensus 7 ~~~~~~~~~dLFaG~Gg~~~g~~~aG~~~v~~~e~d~~a~~t~~~N~ 53 (327)
T 2c7p_A 7 KQLTGLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEMNF 53 (327)
T ss_dssp CTTTTCEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHHHHHHHHH
T ss_pred cccCCCcEEEECCCcCHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHc
Confidence 33456799999999999999988899888999999999999888886
|
| >3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A* | Back alignment and structure |
|---|
Probab=96.64 E-value=0.0027 Score=48.18 Aligned_cols=152 Identities=12% Similarity=0.016 Sum_probs=84.1
Q ss_pred cHHHHHHHHhhCCCCCCCCcEEEeCCCccHHHHHHHh-cCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCC
Q 038343 6 SSLLLSEFILSFPEIFSNKSCFEVGSGVGLVGICLAH-VKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPN 84 (191)
Q Consensus 6 ~a~~L~~~l~~~~~~~~~~~VLElG~GtG~~~~~la~-~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~ 84 (191)
++..|.+...+. ...++.+||||||++|-.+.+++. .|+++|++.|+...- +. .+..-+. ..-+
T Consensus 63 a~~KL~ei~ek~-~l~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~g------------he-~P~~~~s-~gwn 127 (267)
T 3p8z_A 63 GSAKLQWFVERN-MVIPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPG------------HE-EPVPMST-YGWN 127 (267)
T ss_dssp HHHHHHHHHHTT-SSCCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTT------------SC-CCCCCCC-TTTT
T ss_pred HHHHHHHHHHhc-CCCCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCC------------cc-Ccchhhh-cCcC
Confidence 577787776666 456788999999999999996555 577799999985321 11 0000000 0012
Q ss_pred eeEEEee-cCCCCCcCCCCCCCCCEEEEcccccCCCChH-------HHHHHHHHHhccCCCCccccccCCCCccc-----
Q 038343 85 VVQCVHL-PWESASESGLSAFVPEIILGADILYDRSCFP-------DLVRILAILLNRRKSVSSSRKESSKGFTL----- 151 (191)
Q Consensus 85 ~i~~~~l-dw~~~~~~~~~~~~fDvIi~~d~ly~~~~~~-------~ll~~l~~ll~~~g~~~~~~~~~~~~~~~----- 151 (191)
.+.+... |... .+..++|+|+| |+=....... .+|+.+.++|++ +..++-.++|-...-+
T Consensus 128 ~v~fk~gvDv~~-----~~~~~~Dtllc-DIgeSs~~~~vE~~RtlrvLela~~wL~~-~~fc~KVl~py~p~v~e~l~~ 200 (267)
T 3p8z_A 128 IVKLMSGKDVFY-----LPPEKCDTLLC-DIGESSPSPTVEESRTIRVLKMVEPWLKN-NQFCIKVLNPYMPTVIEHLER 200 (267)
T ss_dssp SEEEECSCCGGG-----CCCCCCSEEEE-CCCCCCSCHHHHHHHHHHHHHHHGGGCSS-CEEEEEESCCCSHHHHHHHHH
T ss_pred ceEEEeccceee-----cCCccccEEEE-ecCCCCCChhhhhhHHHHHHHHHHHhccc-CCEEEEEccCCChhHHHHHHH
Confidence 3445544 4321 23357999998 5444333311 145555677887 6777767676542222
Q ss_pred -ccccCCCCccccccccCCCCEEEEEeccc
Q 038343 152 -DTKCNTNDLNDLTAVTSKGPVAYIATVIR 180 (191)
Q Consensus 152 -~~~~~~~~~~~~~~~~~~~~~~~va~~~r 180 (191)
....+.+-+-.|. ........|+.+-.|
T Consensus 201 lq~~fgg~lVR~P~-SRnsThEMY~Vsg~~ 229 (267)
T 3p8z_A 201 LQRKHGGMLVRNPL-SRNSTHEMYWISNGT 229 (267)
T ss_dssp HHHHHCCEEECCTT-SCTTCCCEEEESSCC
T ss_pred HHHHhCCEeEeCCC-CCCCcceEEEEecCC
Confidence 1223333333333 334444455555555
|
| >4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda} | Back alignment and structure |
|---|
Probab=96.15 E-value=0.004 Score=49.78 Aligned_cols=42 Identities=17% Similarity=0.177 Sum_probs=35.3
Q ss_pred CcEEEeCCCccHHHHHHHhcCC--CeEEEEcCChHHHHHHHHHH
Q 038343 24 KSCFEVGSGVGLVGICLAHVKA--SKVTLTDGDHLTLANMRSNL 65 (191)
Q Consensus 24 ~~VLElG~GtG~~~~~la~~g~--~~v~~tD~~~~~l~~~~~n~ 65 (191)
.+++||.||.|.+++-+.+.|. ..|.++|+++.+.+..+.|.
T Consensus 4 ~~~idLFaG~GG~~~G~~~aG~~~~~v~a~e~d~~a~~ty~~N~ 47 (333)
T 4h0n_A 4 HKILELYSGIGGMHCAWKESGLDGEIVAAVDINTVANSVYKHNF 47 (333)
T ss_dssp EEEEEETCTTTHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHC
T ss_pred CEEEEECcCccHHHHHHHHcCCCceEEEEEeCCHHHHHHHHHhC
Confidence 3799999999999888877775 57899999999888777665
|
| >3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=96.15 E-value=0.0055 Score=48.85 Aligned_cols=43 Identities=14% Similarity=0.098 Sum_probs=36.5
Q ss_pred CCcEEEeCCCccHHHHHHHhcCC--CeE-EEEcCChHHHHHHHHHH
Q 038343 23 NKSCFEVGSGVGLVGICLAHVKA--SKV-TLTDGDHLTLANMRSNL 65 (191)
Q Consensus 23 ~~~VLElG~GtG~~~~~la~~g~--~~v-~~tD~~~~~l~~~~~n~ 65 (191)
..+++||.||.|.+++-+.+.|. ..| .++|+++.+.+..+.|.
T Consensus 10 ~~~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d~~a~~ty~~N~ 55 (327)
T 3qv2_A 10 QVNVIEFFSGIGGLRSSYERSSININATFIPFDINEIANKIYSKNF 55 (327)
T ss_dssp CEEEEEETCTTTHHHHHHHHSSCCCCEEEEEECCCHHHHHHHHHHH
T ss_pred CCEEEEECCChhHHHHHHHHcCCCceEEEEEEECCHHHHHHHHHHC
Confidence 34899999999999998888873 567 79999999988888775
|
| >3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A* | Back alignment and structure |
|---|
Probab=96.15 E-value=0.014 Score=46.17 Aligned_cols=42 Identities=14% Similarity=0.108 Sum_probs=36.5
Q ss_pred CcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHH
Q 038343 24 KSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNL 65 (191)
Q Consensus 24 ~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~ 65 (191)
++||||.||.|.+++-+.+.|..-+.+.|+++.+.+..+.|.
T Consensus 1 mkvidLFsG~GG~~~G~~~aG~~~v~a~e~d~~a~~ty~~N~ 42 (331)
T 3ubt_Y 1 MNLISLFSGAGGLDLGFQKAGFRIICANEYDKSIWKTYESNH 42 (331)
T ss_dssp CEEEEESCTTCHHHHHHHHTTCEEEEEEECCTTTHHHHHHHC
T ss_pred CeEEEeCcCccHHHHHHHHCCCEEEEEEeCCHHHHHHHHHHC
Confidence 479999999999999888888878889999999888877663
|
| >2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56 | Back alignment and structure |
|---|
Probab=96.11 E-value=0.013 Score=48.08 Aligned_cols=47 Identities=17% Similarity=0.249 Sum_probs=40.8
Q ss_pred CCCCcEEEeCCCccHHHHHHH-hcC--CCeEEEEcCChHHHHHHHHHHHH
Q 038343 21 FSNKSCFEVGSGVGLVGICLA-HVK--ASKVTLTDGDHLTLANMRSNLEL 67 (191)
Q Consensus 21 ~~~~~VLElG~GtG~~~~~la-~~g--~~~v~~tD~~~~~l~~~~~n~~~ 67 (191)
.++..|+|+||+.|..++.++ +.+ ..+|++.|.+|...+.+++|++.
T Consensus 225 ~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~n~~~ 274 (409)
T 2py6_A 225 SDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRR 274 (409)
T ss_dssp CSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHH
T ss_pred CCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHh
Confidence 367799999999999999776 443 25999999999999999999998
|
| >2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.98 E-value=0.011 Score=46.31 Aligned_cols=44 Identities=5% Similarity=-0.083 Sum_probs=36.9
Q ss_pred CCCcEEEeCCCccHHHHHHHhcCCCe--EEEEcCChHHHHHHHHHH
Q 038343 22 SNKSCFEVGSGVGLVGICLAHVKASK--VTLTDGDHLTLANMRSNL 65 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~g~~~--v~~tD~~~~~l~~~~~n~ 65 (191)
...+++||.||.|.+++.+.+.|... |.++|+++.+.+..+.|.
T Consensus 15 ~~~~vidLFaG~GG~~~g~~~aG~~~~~v~a~E~d~~a~~ty~~N~ 60 (295)
T 2qrv_A 15 KPIRVLSLFDGIATGLLVLKDLGIQVDRYIASEVCEDSITVGMVRH 60 (295)
T ss_dssp CCEEEEEETCTTTHHHHHHHHTTBCEEEEEEECCCHHHHHHHHHHT
T ss_pred CCCEEEEeCcCccHHHHHHHHCCCccceEEEEECCHHHHHHHHHhC
Confidence 45589999999999999888888754 799999999888777664
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=95.23 E-value=0.017 Score=45.83 Aligned_cols=46 Identities=11% Similarity=0.011 Sum_probs=40.3
Q ss_pred CCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHh
Q 038343 22 SNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELN 68 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n 68 (191)
++..|||-.||+|.+++.+.++|. +++++|+++...+.+++++...
T Consensus 252 ~~~~VlDpF~GsGtt~~aa~~~gr-~~ig~e~~~~~~~~~~~r~~~~ 297 (323)
T 1boo_A 252 PDDLVVDIFGGSNTTGLVAERESR-KWISFEMKPEYVAASAFRFLDN 297 (323)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHGGGSCS
T ss_pred CCCEEEECCCCCCHHHHHHHHcCC-CEEEEeCCHHHHHHHHHHHHhc
Confidence 677899999999999999999986 9999999999988888766543
|
| >1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A | Back alignment and structure |
|---|
Probab=95.11 E-value=0.032 Score=44.23 Aligned_cols=58 Identities=10% Similarity=0.042 Sum_probs=43.2
Q ss_pred HHHHHHhhCCCCCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCCh---HHHHHHHHHHHHh
Q 038343 9 LLSEFILSFPEIFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDH---LTLANMRSNLELN 68 (191)
Q Consensus 9 ~L~~~l~~~~~~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~---~~l~~~~~n~~~n 68 (191)
.|.+.+.... ..++..|||-.||+|.+++++.++|. +++++|+++ ..++.+++++...
T Consensus 230 ~l~~~~i~~~-~~~~~~vlDpF~GsGtt~~aa~~~~r-~~ig~e~~~~~~~~~~~~~~Rl~~~ 290 (319)
T 1eg2_A 230 AVIERLVRAL-SHPGSTVLDFFAGSGVTARVAIQEGR-NSICTDAAPVFKEYYQKQLTFLQDD 290 (319)
T ss_dssp HHHHHHHHHH-SCTTCEEEETTCTTCHHHHHHHHHTC-EEEEEESSTHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHh-CCCCCEEEecCCCCCHHHHHHHHcCC-cEEEEECCccHHHHHHHHHHHHHHc
Confidence 3444443322 23677999999999999999999986 899999999 8888887776543
|
| >2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A* | Back alignment and structure |
|---|
Probab=93.95 E-value=0.062 Score=41.22 Aligned_cols=153 Identities=9% Similarity=-0.006 Sum_probs=79.0
Q ss_pred cHHHHHHHHhhCCCCCCCCcEEEeCCCccHHHHHHHhc-CCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCC
Q 038343 6 SSLLLSEFILSFPEIFSNKSCFEVGSGVGLVGICLAHV-KASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPN 84 (191)
Q Consensus 6 ~a~~L~~~l~~~~~~~~~~~VLElG~GtG~~~~~la~~-g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~ 84 (191)
++..|.+.-.+. -..++.+||||||+.|..+.++++. +...|.+.++.... ....+.... ..-.
T Consensus 58 AayKL~EIdeK~-likpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~--------~~~P~~~~~------~Gv~ 122 (269)
T 2px2_A 58 GTAKLRWLVERR-FVQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPG--------HEEPMLMQS------YGWN 122 (269)
T ss_dssp HHHHHHHHHHTT-SCCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTT--------SCCCCCCCS------TTGG
T ss_pred HHHHHHHHHHcC-CCCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEcccc--------ccCCCcccC------CCce
Confidence 577787766654 4446889999999999999998876 22234444442210 001110000 0001
Q ss_pred eeEEEee-cCCCCCcCCCCCCCCCEEEEcccccCCCC--------hHHHHHHHHHHhccCC-CCccccccCCCCcccc--
Q 038343 85 VVQCVHL-PWESASESGLSAFVPEIILGADILYDRSC--------FPDLVRILAILLNRRK-SVSSSRKESSKGFTLD-- 152 (191)
Q Consensus 85 ~i~~~~l-dw~~~~~~~~~~~~fDvIi~~d~ly~~~~--------~~~ll~~l~~ll~~~g-~~~~~~~~~~~~~~~~-- 152 (191)
-+.+.+. |+.+ ....++|+|++ |+--.... +. .+....++|+|+| ...+-.+.+-.....+
T Consensus 123 ~i~~~~G~Df~~-----~~~~~~DvVLS-DMAPnSG~~~vD~~Rs~~-aL~~A~~~Lk~gG~~FvvKVFqg~~~~~~~~l 195 (269)
T 2px2_A 123 IVTMKSGVDVFY-----KPSEISDTLLC-DIGESSPSAEIEEQRTLR-ILEMVSDWLSRGPKEFCIKILCPYMPKVIEKL 195 (269)
T ss_dssp GEEEECSCCGGG-----SCCCCCSEEEE-CCCCCCSCHHHHHHHHHH-HHHHHHHHHTTCCSEEEEEESCTTSHHHHHHH
T ss_pred EEEeeccCCccC-----CCCCCCCEEEe-CCCCCCCccHHHHHHHHH-HHHHHHHHhhcCCcEEEEEECCCCchHHHHHH
Confidence 1233334 5443 22357999997 54433221 12 5667778999998 5555444431111111
Q ss_pred ----cccCCCCccccccccCCCCEEEEEecccC
Q 038343 153 ----TKCNTNDLNDLTAVTSKGPVAYIATVIRN 181 (191)
Q Consensus 153 ----~~~~~~~~~~~~~~~~~~~~~~va~~~r~ 181 (191)
......- ..++.....-...|+.+..|+
T Consensus 196 ~~lk~~F~~vk-vk~paSR~~S~E~YlVa~~~~ 227 (269)
T 2px2_A 196 ESLQRRFGGGL-VRVPLSRNSNHEMYWVSGASG 227 (269)
T ss_dssp HHHHHHHCCEE-ECCTTSCTTCCCEEEETTCCS
T ss_pred HHHHHHcCCEE-EECCCCCCCCccEEEEecccC
Confidence 0011111 133344445556888887773
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=93.00 E-value=2.7 Score=33.74 Aligned_cols=103 Identities=18% Similarity=0.221 Sum_probs=63.4
Q ss_pred ccccHHHHHHHHhhCCC-CCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccC
Q 038343 3 IWPSSLLLSEFILSFPE-IFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYE 81 (191)
Q Consensus 3 ~W~~a~~L~~~l~~~~~-~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~ 81 (191)
-|++|- +||.++.. ...+.+||-++.+-|.++..++..+. +..+| +--....++.|+..|++...
T Consensus 21 a~da~d---~~ll~~~~~~~~~~~~~~~~d~~gal~~~~~~~~~--~~~~d-s~~~~~~~~~n~~~~~~~~~-------- 86 (375)
T 4dcm_A 21 AWEAAD---EYLLQQLDDTEIRGPVLILNDAFGALSCALAEHKP--YSIGD-SYISELATRENLRLNGIDES-------- 86 (375)
T ss_dssp SCCHHH---HHHHHTTTTCCCCSCEEEECCSSSHHHHHTGGGCC--EEEES-CHHHHHHHHHHHHHTTCCGG--------
T ss_pred ccchHH---HHHHHhhhhccCCCCEEEECCCCCHHHHhhccCCc--eEEEh-HHHHHHHHHHHHHHcCCCcc--------
Confidence 477764 34444422 22456899999999999888776543 34456 45566788899999987531
Q ss_pred CCCeeEEEeecCCCCCcCCCCCCCCCEEEEcccccCCCChHHHHHHHHHHhc
Q 038343 82 DPNVVQCVHLPWESASESGLSAFVPEIILGADILYDRSCFPDLVRILAILLN 133 (191)
Q Consensus 82 ~~~~i~~~~ldw~~~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~ 133 (191)
.+.+. -.|... ...||+|+. +.+.....+...+..++.
T Consensus 87 ---~~~~~-~~~~~~------~~~~~~v~~----~lpk~~~~l~~~L~~l~~ 124 (375)
T 4dcm_A 87 ---SVKFL-DSTADY------PQQPGVVLI----KVPKTLALLEQQLRALRK 124 (375)
T ss_dssp ---GSEEE-ETTSCC------CSSCSEEEE----ECCSCHHHHHHHHHHHHT
T ss_pred ---ceEec-cccccc------ccCCCEEEE----EcCCCHHHHHHHHHHHHh
Confidence 13221 122221 246898874 666666666666655554
|
| >4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=92.45 E-value=1.4 Score=33.49 Aligned_cols=83 Identities=10% Similarity=0.137 Sum_probs=52.6
Q ss_pred CCCCCCCCcEEEeCCCcc---HHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecC
Q 038343 17 FPEIFSNKSCFEVGSGVG---LVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPW 93 (191)
Q Consensus 17 ~~~~~~~~~VLElG~GtG---~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw 93 (191)
++..++|+.+|==|++.| .++..+++.|+ +|+++|.+.. +.+.+.++..+ .+......|.
T Consensus 3 n~f~L~GKvalVTGas~GIG~aiA~~la~~Ga-~Vvi~~r~~~--~~~~~~~~~~g--------------~~~~~~~~Dv 65 (247)
T 4hp8_A 3 NPFSLEGRKALVTGANTGLGQAIAVGLAAAGA-EVVCAARRAP--DETLDIIAKDG--------------GNASALLIDF 65 (247)
T ss_dssp CTTCCTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCC--HHHHHHHHHTT--------------CCEEEEECCT
T ss_pred CCcCCCCCEEEEeCcCCHHHHHHHHHHHHcCC-EEEEEeCCcH--HHHHHHHHHhC--------------CcEEEEEccC
Confidence 445678999998898887 35557788888 8999998643 23333344443 2455667776
Q ss_pred CCCCcC--CCCCCCCCEEEEccccc
Q 038343 94 ESASES--GLSAFVPEIILGADILY 116 (191)
Q Consensus 94 ~~~~~~--~~~~~~fDvIi~~d~ly 116 (191)
.+.... ....++.|+++.+--+.
T Consensus 66 ~d~~~v~~~~~~g~iDiLVNNAGi~ 90 (247)
T 4hp8_A 66 ADPLAAKDSFTDAGFDILVNNAGII 90 (247)
T ss_dssp TSTTTTTTSSTTTCCCEEEECCCCC
T ss_pred CCHHHHHHHHHhCCCCEEEECCCCC
Confidence 654322 13446799998754333
|
| >3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli} | Back alignment and structure |
|---|
Probab=92.31 E-value=0.19 Score=40.04 Aligned_cols=42 Identities=12% Similarity=0.048 Sum_probs=34.7
Q ss_pred CCCCcEEEeCCCccHHHHHHHhc-CC-CeEEEEcCChHHHHHHH
Q 038343 21 FSNKSCFEVGSGVGLVGICLAHV-KA-SKVTLTDGDHLTLANMR 62 (191)
Q Consensus 21 ~~~~~VLElG~GtG~~~~~la~~-g~-~~v~~tD~~~~~l~~~~ 62 (191)
.++..++|..+|.|.-+..+++. +. .+|++.|.++.+++.++
T Consensus 56 ~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~ 99 (347)
T 3tka_A 56 RPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK 99 (347)
T ss_dssp CTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHT
T ss_pred CCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH
Confidence 46789999999999888866654 43 48999999999998874
|
| >3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A | Back alignment and structure |
|---|
Probab=92.28 E-value=0.2 Score=42.01 Aligned_cols=43 Identities=9% Similarity=0.133 Sum_probs=37.2
Q ss_pred CCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHH
Q 038343 23 NKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNL 65 (191)
Q Consensus 23 ~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~ 65 (191)
..+++||.||.|.+++-+.+.|...|.++|+++.+.+..+.|.
T Consensus 88 ~~~viDLFaG~GGlslG~~~aG~~~v~avE~d~~A~~ty~~N~ 130 (482)
T 3me5_A 88 AFRFIDLFAGIGGIRRGFESIGGQCVFTSEWNKHAVRTYKANH 130 (482)
T ss_dssp SEEEEEESCTTSHHHHHHHTTTEEEEEEECCCHHHHHHHHHHS
T ss_pred cceEEEecCCccHHHHHHHHCCCEEEEEEeCCHHHHHHHHHhc
Confidence 3589999999999999888888877999999998888777664
|
| >1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52 | Back alignment and structure |
|---|
Probab=92.14 E-value=0.39 Score=39.06 Aligned_cols=52 Identities=19% Similarity=0.201 Sum_probs=31.4
Q ss_pred HHHHHHHhhC---CCCCCCCcEEEeCCCccHHHH-HHHhc-------CCCeEEEEcCChHHHH
Q 038343 8 LLLSEFILSF---PEIFSNKSCFEVGSGVGLVGI-CLAHV-------KASKVTLTDGDHLTLA 59 (191)
Q Consensus 8 ~~L~~~l~~~---~~~~~~~~VLElG~GtG~~~~-~la~~-------g~~~v~~tD~~~~~l~ 59 (191)
..++.|+.+. ........|+|+|+|.|.+.. ++..+ ..-+|+.+|.|+...+
T Consensus 63 e~la~~~~~~w~~~g~p~~~~ivElGaG~GtLa~diL~~l~~~p~~~~~~~y~iVE~Sp~Lr~ 125 (387)
T 1zkd_A 63 ELLGLWSASVWKAADEPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQ 125 (387)
T ss_dssp HHHHHHHHHHHHHTTCCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCCcEEEEECCCcchHHHHHHHHHHhCCccccccEEEEEecCHHHHH
Confidence 4555555441 111123479999999996655 33221 1238999999976554
|
| >4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=91.36 E-value=0.49 Score=36.12 Aligned_cols=82 Identities=18% Similarity=0.125 Sum_probs=55.4
Q ss_pred CCCCCcEEEeCCCcc---HHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCC
Q 038343 20 IFSNKSCFEVGSGVG---LVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESA 96 (191)
Q Consensus 20 ~~~~~~VLElG~GtG---~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~ 96 (191)
.++|+.+|==|++.| .++..+++.|+ +|+++|.+++.++.+.+.+...+ .++.....|..+.
T Consensus 6 ~L~gKvalVTGas~GIG~aia~~la~~Ga-~Vvi~~~~~~~~~~~~~~l~~~g--------------~~~~~~~~Dv~~~ 70 (255)
T 4g81_D 6 DLTGKTALVTGSARGLGFAYAEGLAAAGA-RVILNDIRATLLAESVDTLTRKG--------------YDAHGVAFDVTDE 70 (255)
T ss_dssp CCTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEECCSCHHHHHHHHHHHHHTT--------------CCEEECCCCTTCH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcC--------------CcEEEEEeeCCCH
Confidence 457888998898877 34556778888 89999999988887777666654 2355556666544
Q ss_pred CcCC-------CCCCCCCEEEEccccc
Q 038343 97 SESG-------LSAFVPEIILGADILY 116 (191)
Q Consensus 97 ~~~~-------~~~~~fDvIi~~d~ly 116 (191)
..-. -.-++.|+++.+--+.
T Consensus 71 ~~v~~~~~~~~~~~G~iDiLVNNAG~~ 97 (255)
T 4g81_D 71 LAIEAAFSKLDAEGIHVDILINNAGIQ 97 (255)
T ss_dssp HHHHHHHHHHHHTTCCCCEEEECCCCC
T ss_pred HHHHHHHHHHHHHCCCCcEEEECCCCC
Confidence 2110 1235789988754443
|
| >4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius} | Back alignment and structure |
|---|
Probab=91.30 E-value=1.1 Score=34.11 Aligned_cols=79 Identities=14% Similarity=0.075 Sum_probs=55.4
Q ss_pred CCCCCcEEEeCCCccH---HHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCC
Q 038343 20 IFSNKSCFEVGSGVGL---VGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESA 96 (191)
Q Consensus 20 ~~~~~~VLElG~GtG~---~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~ 96 (191)
.++|+.+|==|++.|+ ++..+++.|+ +|+++|.+++.++.+.+.++..+ .++.+...|..+.
T Consensus 4 sL~gKvalVTGas~GIG~aiA~~la~~Ga-~Vv~~~~~~~~~~~~~~~i~~~g--------------~~~~~~~~Dvt~~ 68 (254)
T 4fn4_A 4 SLKNKVVIVTGAGSGIGRAIAKKFALNDS-IVVAVELLEDRLNQIVQELRGMG--------------KEVLGVKADVSKK 68 (254)
T ss_dssp GGTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT--------------CCEEEEECCTTSH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcC--------------CcEEEEEccCCCH
Confidence 3578889999988873 4556777888 89999999999988887776655 3456677776654
Q ss_pred CcCC-------CCCCCCCEEEEcc
Q 038343 97 SESG-------LSAFVPEIILGAD 113 (191)
Q Consensus 97 ~~~~-------~~~~~fDvIi~~d 113 (191)
..-. -.-++.|+++.+-
T Consensus 69 ~~v~~~~~~~~~~~G~iDiLVNNA 92 (254)
T 4fn4_A 69 KDVEEFVRRTFETYSRIDVLCNNA 92 (254)
T ss_dssp HHHHHHHHHHHHHHSCCCEEEECC
T ss_pred HHHHHHHHHHHHHcCCCCEEEECC
Confidence 3210 0125789988644
|
| >2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=91.13 E-value=0.47 Score=38.31 Aligned_cols=45 Identities=18% Similarity=0.210 Sum_probs=33.8
Q ss_pred CCCCCCCcEEEeCCCc-cHHHHHHHh-cCCCeEEEEcCChHHHHHHH
Q 038343 18 PEIFSNKSCFEVGSGV-GLVGICLAH-VKASKVTLTDGDHLTLANMR 62 (191)
Q Consensus 18 ~~~~~~~~VLElG~Gt-G~~~~~la~-~g~~~v~~tD~~~~~l~~~~ 62 (191)
....++.+||-+|+|. |...+.+++ .|+.+|+++|.+++-++.++
T Consensus 181 ~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~ 227 (398)
T 2dph_A 181 AGVKPGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERLKLLS 227 (398)
T ss_dssp TTCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHH
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHH
Confidence 3445788999999874 777775555 67768999999887776654
|
| >1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=90.84 E-value=0.91 Score=36.17 Aligned_cols=97 Identities=13% Similarity=0.084 Sum_probs=58.2
Q ss_pred hCCCCCCCCcEEEeCCCc-cHHHHHHHh-cCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecC
Q 038343 16 SFPEIFSNKSCFEVGSGV-GLVGICLAH-VKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPW 93 (191)
Q Consensus 16 ~~~~~~~~~~VLElG~Gt-G~~~~~la~-~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw 93 (191)
+.....++.+||-+|+|. |...+.+++ .|+.+|+++|.+++-++.+++ .+.. ..++.
T Consensus 184 ~~~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~~----lGa~-----------------~vi~~ 242 (371)
T 1f8f_A 184 NALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQ----LGAT-----------------HVINS 242 (371)
T ss_dssp TTTCCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHH----HTCS-----------------EEEET
T ss_pred hccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH----cCCC-----------------EEecC
Confidence 344555788999999873 766665554 677679999998887776653 2321 01121
Q ss_pred CCCC-cC---CCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCc
Q 038343 94 ESAS-ES---GLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVS 139 (191)
Q Consensus 94 ~~~~-~~---~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~ 139 (191)
.+.. .. ....+.+|+|+-+ .-....++...++|+++|...
T Consensus 243 ~~~~~~~~~~~~~~gg~D~vid~------~g~~~~~~~~~~~l~~~G~iv 286 (371)
T 1f8f_A 243 KTQDPVAAIKEITDGGVNFALES------TGSPEILKQGVDALGILGKIA 286 (371)
T ss_dssp TTSCHHHHHHHHTTSCEEEEEEC------SCCHHHHHHHHHTEEEEEEEE
T ss_pred CccCHHHHHHHhcCCCCcEEEEC------CCCHHHHHHHHHHHhcCCEEE
Confidence 1111 00 0112368888742 123466788888999987544
|
| >4dkj_A Cytosine-specific methyltransferase; CG-specificity, DNA intercalation, CPG sequence, cytosine C5 methylation; HET: DNA C37 5CM SAH; 2.15A {Mycoplasma penetrans} | Back alignment and structure |
|---|
Probab=89.88 E-value=0.23 Score=40.59 Aligned_cols=47 Identities=11% Similarity=-0.001 Sum_probs=37.1
Q ss_pred CCCCCcEEEeCCCccHHHHHHHhcC--CCe----EEEEcCChHHHHHHHHHHH
Q 038343 20 IFSNKSCFEVGSGVGLVGICLAHVK--ASK----VTLTDGDHLTLANMRSNLE 66 (191)
Q Consensus 20 ~~~~~~VLElG~GtG~~~~~la~~g--~~~----v~~tD~~~~~l~~~~~n~~ 66 (191)
..+..+|+||.||.|..++.+.+.| ..- |.++|+++.+...-+.|..
T Consensus 7 ~~~~lrvldLFsGiGG~~~Gl~~aG~~~~~~~~~v~avEid~~A~~ty~~n~~ 59 (403)
T 4dkj_A 7 KIKVIKVFEAFAGIGSQFKALKNIARSKNWEIQHSGMVEWFVDAIVSYVAIHS 59 (403)
T ss_dssp CCEEEEEEEETCTTCHHHHHHHHHHHHHTEEEEEEEEECCBHHHHHHHHHHHC
T ss_pred ccccceEEEEecCcCHHHHHHHHhCCccccceeeEEEEecCHHHHHHHHHHcC
Confidence 3345689999999998888777766 334 8899999999888877764
|
| >3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A | Back alignment and structure |
|---|
Probab=89.78 E-value=0.72 Score=35.72 Aligned_cols=48 Identities=23% Similarity=0.259 Sum_probs=34.1
Q ss_pred CCCCCcEEEeCCC-cc-HHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHH
Q 038343 20 IFSNKSCFEVGSG-VG-LVGICLAHVKASKVTLTDGDHLTLANMRSNLEL 67 (191)
Q Consensus 20 ~~~~~~VLElG~G-tG-~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~ 67 (191)
...++++|=+|+| .| .+...++..|+++|+.++.+++-.+.+.+.+..
T Consensus 124 ~l~~k~vlVlGaGG~g~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~ 173 (283)
T 3jyo_A 124 NAKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINN 173 (283)
T ss_dssp TCCCSEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHH
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHh
Confidence 4578899999998 22 233356677887899999988766655555443
|
| >1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=89.60 E-value=1.1 Score=35.95 Aligned_cols=44 Identities=25% Similarity=0.364 Sum_probs=33.5
Q ss_pred CCCCCCcEEEeCCC-ccHHHHHHHh-cCCCeEEEEcCChHHHHHHH
Q 038343 19 EIFSNKSCFEVGSG-VGLVGICLAH-VKASKVTLTDGDHLTLANMR 62 (191)
Q Consensus 19 ~~~~~~~VLElG~G-tG~~~~~la~-~g~~~v~~tD~~~~~l~~~~ 62 (191)
...++.+||=+|+| .|...+.+++ +|+..|+++|.+++-++.++
T Consensus 182 ~~~~g~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~~~a~ 227 (398)
T 1kol_A 182 GVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAK 227 (398)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHH
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHH
Confidence 44578899999987 4777775555 67768999999988777664
|
| >4f3n_A Uncharacterized ACR, COG1565 superfamily; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.75A {Burkholderia thailandensis} PDB: 4g67_A* | Back alignment and structure |
|---|
Probab=89.56 E-value=0.29 Score=40.30 Aligned_cols=60 Identities=18% Similarity=0.192 Sum_probs=36.5
Q ss_pred HHHHHHHhhCCCCCCCCcEEEeCCCccHHHH-HH---HhcC--CCeEEEEcCChHHHHHHHHHHHH
Q 038343 8 LLLSEFILSFPEIFSNKSCFEVGSGVGLVGI-CL---AHVK--ASKVTLTDGDHLTLANMRSNLEL 67 (191)
Q Consensus 8 ~~L~~~l~~~~~~~~~~~VLElG~GtG~~~~-~l---a~~g--~~~v~~tD~~~~~l~~~~~n~~~ 67 (191)
..|+.|+.+.-......+|+|+|+|+|.+.. ++ .+.+ ..+|+.+|.|+..-+.-++.+..
T Consensus 123 e~la~~~~~~~~~~g~~~ivE~GaG~GtLa~DiL~~l~~~~~~~~~y~iVE~Sp~Lr~~Q~~~L~~ 188 (432)
T 4f3n_A 123 QTLARPVAQALDASGTRRVMEFGAGTGKLAAGLLTALAALGVELDEYAIVDLSGELRARQRETLGA 188 (432)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHHHHHTTCCCSEEEEECTTSSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCeEEEeCCCccHHHHHHHHHHHhcCCCCceEEEEEcCHHHHHHHHHHHhc
Confidence 3455554432111124589999999996554 33 2222 23899999998776655555543
|
| >3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* | Back alignment and structure |
|---|
Probab=89.46 E-value=1.5 Score=34.48 Aligned_cols=99 Identities=16% Similarity=0.099 Sum_probs=59.3
Q ss_pred HHhhCCCCCCCCcEEEeCCC-ccHHHHHHHh-cCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEe
Q 038343 13 FILSFPEIFSNKSCFEVGSG-VGLVGICLAH-VKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVH 90 (191)
Q Consensus 13 ~l~~~~~~~~~~~VLElG~G-tG~~~~~la~-~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ 90 (191)
.........++.+||-.|+| .|...+.+++ .|+ +|+++|.+++-++.+++ .+.. ..
T Consensus 157 ~~l~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~----lGa~-----------------~~ 214 (340)
T 3s2e_A 157 KGLKVTDTRPGQWVVISGIGGLGHVAVQYARAMGL-RVAAVDIDDAKLNLARR----LGAE-----------------VA 214 (340)
T ss_dssp HHHHTTTCCTTSEEEEECCSTTHHHHHHHHHHTTC-EEEEEESCHHHHHHHHH----TTCS-----------------EE
T ss_pred HHHHHcCCCCCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHH----cCCC-----------------EE
Confidence 33344455678899999987 4777775555 677 99999999887776643 3321 11
Q ss_pred ecCCCCCc-CCC--CCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCc
Q 038343 91 LPWESASE-SGL--SAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVS 139 (191)
Q Consensus 91 ldw~~~~~-~~~--~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~ 139 (191)
++..+... ... ..+.+|+|+-+ .-....++...++|+++|...
T Consensus 215 i~~~~~~~~~~~~~~~g~~d~vid~------~g~~~~~~~~~~~l~~~G~iv 260 (340)
T 3s2e_A 215 VNARDTDPAAWLQKEIGGAHGVLVT------AVSPKAFSQAIGMVRRGGTIA 260 (340)
T ss_dssp EETTTSCHHHHHHHHHSSEEEEEES------SCCHHHHHHHHHHEEEEEEEE
T ss_pred EeCCCcCHHHHHHHhCCCCCEEEEe------CCCHHHHHHHHHHhccCCEEE
Confidence 22221110 000 11257877642 124567788888999987644
|
| >3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A* | Back alignment and structure |
|---|
Probab=89.40 E-value=1.1 Score=35.22 Aligned_cols=52 Identities=10% Similarity=0.058 Sum_probs=33.9
Q ss_pred HhhCCCCCCCCcEEEeCCC-cc-HHHHHHHhcCCCeEEEEcCC---hHHHHHHHHHH
Q 038343 14 ILSFPEIFSNKSCFEVGSG-VG-LVGICLAHVKASKVTLTDGD---HLTLANMRSNL 65 (191)
Q Consensus 14 l~~~~~~~~~~~VLElG~G-tG-~~~~~la~~g~~~v~~tD~~---~~~l~~~~~n~ 65 (191)
|........++++|=+|+| .| .+...++..|+++|+.++.+ .+-.+.+.+.+
T Consensus 145 L~~~~~~l~gk~~lVlGaGG~g~aia~~L~~~Ga~~V~i~nR~~~~~~~a~~la~~~ 201 (315)
T 3tnl_A 145 LKEAGHDIIGKKMTICGAGGAATAICIQAALDGVKEISIFNRKDDFYANAEKTVEKI 201 (315)
T ss_dssp HHHTTCCCTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHH
T ss_pred HHHcCCCccCCEEEEECCChHHHHHHHHHHHCCCCEEEEEECCCchHHHHHHHHHHh
Confidence 3333344678899999998 22 33445677888889999988 55444444333
|
| >3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A | Back alignment and structure |
|---|
Probab=89.36 E-value=1.1 Score=35.33 Aligned_cols=47 Identities=17% Similarity=0.227 Sum_probs=34.1
Q ss_pred CCCCCCCCcEEEeCCC-ccHHHHHHHh-cCCCeEEEEcCChHHHHHHHH
Q 038343 17 FPEIFSNKSCFEVGSG-VGLVGICLAH-VKASKVTLTDGDHLTLANMRS 63 (191)
Q Consensus 17 ~~~~~~~~~VLElG~G-tG~~~~~la~-~g~~~v~~tD~~~~~l~~~~~ 63 (191)
.....++.+||=+|+| .|...+.+++ .|+.+|+++|.+++-++.+++
T Consensus 161 ~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~ 209 (352)
T 3fpc_A 161 LANIKLGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALE 209 (352)
T ss_dssp HTTCCTTCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHHHHHHHHH
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH
Confidence 3445578899999987 4666665555 576689999998877766653
|
| >1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B* | Back alignment and structure |
|---|
Probab=89.11 E-value=0.3 Score=37.07 Aligned_cols=34 Identities=29% Similarity=0.381 Sum_probs=27.2
Q ss_pred CCCcEEEeCCC-cc-HHHHHHHhcCCCeEEEEcCCh
Q 038343 22 SNKSCFEVGSG-VG-LVGICLAHVKASKVTLTDGDH 55 (191)
Q Consensus 22 ~~~~VLElG~G-tG-~~~~~la~~g~~~v~~tD~~~ 55 (191)
++++|+=+||| .| .+...++..|..+++.+|.+.
T Consensus 30 ~~~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d~ 65 (249)
T 1jw9_B 30 KDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDT 65 (249)
T ss_dssp HHCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred hCCeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCCC
Confidence 56789999998 55 445577888988999999875
|
| >3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A* | Back alignment and structure |
|---|
Probab=89.04 E-value=0.44 Score=37.21 Aligned_cols=43 Identities=33% Similarity=0.373 Sum_probs=30.1
Q ss_pred CCCCCcEEEeCCC-cc-HHHHHHHhcCCCeEEEEcCChHHHHHHH
Q 038343 20 IFSNKSCFEVGSG-VG-LVGICLAHVKASKVTLTDGDHLTLANMR 62 (191)
Q Consensus 20 ~~~~~~VLElG~G-tG-~~~~~la~~g~~~v~~tD~~~~~l~~~~ 62 (191)
.+++.+||=+||| .| .+...+++.|..+++.+|.+.--+.++.
T Consensus 33 kL~~~~VlVvGaGGlGs~va~~La~aGVG~i~lvD~D~Ve~sNL~ 77 (292)
T 3h8v_A 33 KIRTFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDKVELANMN 77 (292)
T ss_dssp GGGGCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBC------
T ss_pred HHhCCeEEEECcCHHHHHHHHHHHHcCCCEEEEECCCccChhhcc
Confidence 4567799999999 66 4556888999999999998764444443
|
| >3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=87.99 E-value=1.4 Score=35.18 Aligned_cols=47 Identities=21% Similarity=0.158 Sum_probs=34.5
Q ss_pred hCCCCCCCCcEEEeCCC-ccHHHHHHHh-cCCCeEEEEcCChHHHHHHH
Q 038343 16 SFPEIFSNKSCFEVGSG-VGLVGICLAH-VKASKVTLTDGDHLTLANMR 62 (191)
Q Consensus 16 ~~~~~~~~~~VLElG~G-tG~~~~~la~-~g~~~v~~tD~~~~~l~~~~ 62 (191)
+.....++.+||=+|+| .|...+.+++ .|+.+|+++|.+++-++.++
T Consensus 187 ~~~~~~~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~ 235 (378)
T 3uko_A 187 NTAKVEPGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAK 235 (378)
T ss_dssp TTTCCCTTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHHHHHH
T ss_pred hhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHH
Confidence 44455678899999987 5666665444 57778999999887776654
|
| >1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A | Back alignment and structure |
|---|
Probab=87.92 E-value=1.3 Score=34.98 Aligned_cols=44 Identities=23% Similarity=0.410 Sum_probs=32.8
Q ss_pred CCCCCCcEEEeCCC-ccHHHHHHHh-cCCCeEEEEcCChHHHHHHH
Q 038343 19 EIFSNKSCFEVGSG-VGLVGICLAH-VKASKVTLTDGDHLTLANMR 62 (191)
Q Consensus 19 ~~~~~~~VLElG~G-tG~~~~~la~-~g~~~v~~tD~~~~~l~~~~ 62 (191)
...++.+||-+|+| .|...+.+++ .|+.+|+++|.+++-++.++
T Consensus 168 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~ 213 (356)
T 1pl8_A 168 GVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAK 213 (356)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHH
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH
Confidence 34578899999987 4666665554 67768999999887766664
|
| >3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B* | Back alignment and structure |
|---|
Probab=86.35 E-value=5.2 Score=30.79 Aligned_cols=52 Identities=13% Similarity=0.197 Sum_probs=34.3
Q ss_pred HhhCCCCCCCCcEEEeCCC-cc-HHHHHHHhcCCCeEEEEcCChHHHHHHHHHH
Q 038343 14 ILSFPEIFSNKSCFEVGSG-VG-LVGICLAHVKASKVTLTDGDHLTLANMRSNL 65 (191)
Q Consensus 14 l~~~~~~~~~~~VLElG~G-tG-~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~ 65 (191)
|........++++|=+|+| .| .+...++..|+.+|+..+.+++-.+.+.+.+
T Consensus 117 L~~~~~~l~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la~~~ 170 (281)
T 3o8q_A 117 LLAQQVLLKGATILLIGAGGAARGVLKPLLDQQPASITVTNRTFAKAEQLAELV 170 (281)
T ss_dssp HHHTTCCCTTCEEEEECCSHHHHHHHHHHHTTCCSEEEEEESSHHHHHHHHHHH
T ss_pred HHHhCCCccCCEEEEECchHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHh
Confidence 3333334578899999998 22 2333566678779999999876655554443
|
| >3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A | Back alignment and structure |
|---|
Probab=86.29 E-value=4 Score=32.51 Aligned_cols=34 Identities=29% Similarity=0.505 Sum_probs=27.1
Q ss_pred CCCcEEEeCCC-cc-HHHHHHHhcCCCeEEEEcCCh
Q 038343 22 SNKSCFEVGSG-VG-LVGICLAHVKASKVTLTDGDH 55 (191)
Q Consensus 22 ~~~~VLElG~G-tG-~~~~~la~~g~~~v~~tD~~~ 55 (191)
++.+|+=+||| .| .+...++..|..+++.+|.+.
T Consensus 117 ~~~~VlvvG~GglGs~va~~La~aGvg~i~lvD~D~ 152 (353)
T 3h5n_A 117 KNAKVVILGCGGIGNHVSVILATSGIGEIILIDNDQ 152 (353)
T ss_dssp HTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEECCB
T ss_pred hCCeEEEECCCHHHHHHHHHHHhCCCCeEEEECCCc
Confidence 46789999998 55 455578888999999999763
|
| >3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=86.27 E-value=5.1 Score=30.01 Aligned_cols=79 Identities=11% Similarity=0.101 Sum_probs=53.4
Q ss_pred CCCCCcEEEeCCCccH---HHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCC
Q 038343 20 IFSNKSCFEVGSGVGL---VGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESA 96 (191)
Q Consensus 20 ~~~~~~VLElG~GtG~---~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~ 96 (191)
.+.++++|=-|++.|+ +...+++.|+ +|+++|.+++.++.+.+.+...+ .++.+...|..+.
T Consensus 8 ~l~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~--------------~~~~~~~~Dv~~~ 72 (264)
T 3ucx_A 8 LLTDKVVVISGVGPALGTTLARRCAEQGA-DLVLAARTVERLEDVAKQVTDTG--------------RRALSVGTDITDD 72 (264)
T ss_dssp TTTTCEEEEESCCTTHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT--------------CCEEEEECCTTCH
T ss_pred CcCCcEEEEECCCcHHHHHHHHHHHHCcC-EEEEEeCCHHHHHHHHHHHHhcC--------------CcEEEEEcCCCCH
Confidence 3578899999988773 4445667787 89999999888877776665543 3466677777654
Q ss_pred CcCC-------CCCCCCCEEEEcc
Q 038343 97 SESG-------LSAFVPEIILGAD 113 (191)
Q Consensus 97 ~~~~-------~~~~~fDvIi~~d 113 (191)
..-. -.-++.|++|.+-
T Consensus 73 ~~v~~~~~~~~~~~g~id~lv~nA 96 (264)
T 3ucx_A 73 AQVAHLVDETMKAYGRVDVVINNA 96 (264)
T ss_dssp HHHHHHHHHHHHHTSCCSEEEECC
T ss_pred HHHHHHHHHHHHHcCCCcEEEECC
Confidence 3210 0124789998754
|
| >4ft4_B DNA (cytosine-5)-methyltransferase 1; chromodomain, BAH domain, DNA methyltransferase domain, H3K9 binding, methylation, transferase; HET: DNA MLY SAH; 2.70A {Zea mays} PDB: 4ft2_A* 4fsx_A* | Back alignment and structure |
|---|
Probab=86.15 E-value=0.65 Score=41.06 Aligned_cols=42 Identities=14% Similarity=0.102 Sum_probs=33.7
Q ss_pred CcEEEeCCCccHHHHHHHhcC------CCeEEEEcCChHHHHHHHHHH
Q 038343 24 KSCFEVGSGVGLVGICLAHVK------ASKVTLTDGDHLTLANMRSNL 65 (191)
Q Consensus 24 ~~VLElG~GtG~~~~~la~~g------~~~v~~tD~~~~~l~~~~~n~ 65 (191)
.+||||.||.|-+++-+.+.| ..-+.++|+++.+.+..+.|.
T Consensus 213 ltvIDLFAG~GGls~Gfe~AG~~~~~~f~vv~AvE~d~~A~~Ty~~Nh 260 (784)
T 4ft4_B 213 ATLLDLYSGCGGMSTGLCLGAALSGLKLETRWAVDFNSFACQSLKYNH 260 (784)
T ss_dssp EEEEEETCTTSHHHHHHHHHHHHHTEEEEEEEEEESCHHHHHHHHHHC
T ss_pred CeEEEeCcCccHHHHHHHHhCcccCCceeEEEEEeCCHHHHHHHHHHC
Confidence 489999999998877655544 346889999999998888773
|
| >1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* | Back alignment and structure |
|---|
Probab=85.78 E-value=1.7 Score=34.63 Aligned_cols=46 Identities=22% Similarity=0.325 Sum_probs=33.6
Q ss_pred CCCCCCCCcEEEeCCC-ccHHHHHHHh-cCCCeEEEEcCChHHHHHHH
Q 038343 17 FPEIFSNKSCFEVGSG-VGLVGICLAH-VKASKVTLTDGDHLTLANMR 62 (191)
Q Consensus 17 ~~~~~~~~~VLElG~G-tG~~~~~la~-~g~~~v~~tD~~~~~l~~~~ 62 (191)
.....++.+||=+|+| .|...+.+++ .|+.+|+++|.+++-++.++
T Consensus 190 ~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~ 237 (376)
T 1e3i_A 190 TAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAK 237 (376)
T ss_dssp TSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHH
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHH
Confidence 3445578899999987 5666665554 57768999999887776664
|
| >4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=85.72 E-value=2.2 Score=32.76 Aligned_cols=46 Identities=15% Similarity=0.120 Sum_probs=35.1
Q ss_pred CCCCCCCcEEEeCCCcc---HHHHHHHhcCCCeEEEEcCChHHHHHHHHH
Q 038343 18 PEIFSNKSCFEVGSGVG---LVGICLAHVKASKVTLTDGDHLTLANMRSN 64 (191)
Q Consensus 18 ~~~~~~~~VLElG~GtG---~~~~~la~~g~~~v~~tD~~~~~l~~~~~n 64 (191)
...++|+.+|==|++.| .++..+++.|+ +|+++|.+++.++.+.+.
T Consensus 24 s~rL~gKvalVTGas~GIG~aiA~~la~~Ga-~V~i~~r~~~~l~~~~~~ 72 (273)
T 4fgs_A 24 TQRLNAKIAVITGATSGIGLAAAKRFVAEGA-RVFITGRRKDVLDAAIAE 72 (273)
T ss_dssp -CTTTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHH
T ss_pred cchhCCCEEEEeCcCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHH
Confidence 34578899999998887 34556778888 899999998887766443
|
| >3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A* | Back alignment and structure |
|---|
Probab=85.67 E-value=1.1 Score=40.97 Aligned_cols=44 Identities=14% Similarity=0.029 Sum_probs=36.7
Q ss_pred CCCcEEEeCCCccHHHHHHHhcCC-CeEEEEcCChHHHHHHHHHH
Q 038343 22 SNKSCFEVGSGVGLVGICLAHVKA-SKVTLTDGDHLTLANMRSNL 65 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~g~-~~v~~tD~~~~~l~~~~~n~ 65 (191)
...+++||.||.|.+++-+.+.|. ..+.++|+++.+.+..+.|.
T Consensus 539 ~~l~~iDLFaG~GGlslGl~~AG~~~vv~avEid~~A~~ty~~N~ 583 (1002)
T 3swr_A 539 PKLRTLDVFSGCGGLSEGFHQAGISDTLWAIEMWDPAAQAFRLNN 583 (1002)
T ss_dssp CCEEEEEESCTTSHHHHHHHHHTSEEEEEEECSSHHHHHHHHHHC
T ss_pred CCCeEEEeccCccHHHHHHHHCCCCceEEEEECCHHHHHHHHHhC
Confidence 445899999999999988888886 57889999999888777663
|
| >1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A* | Back alignment and structure |
|---|
Probab=85.61 E-value=1.6 Score=34.81 Aligned_cols=47 Identities=17% Similarity=0.248 Sum_probs=34.2
Q ss_pred hCCCCCCCCcEEEeCCC-ccHHHHHHHh-cCCCeEEEEcCChHHHHHHH
Q 038343 16 SFPEIFSNKSCFEVGSG-VGLVGICLAH-VKASKVTLTDGDHLTLANMR 62 (191)
Q Consensus 16 ~~~~~~~~~~VLElG~G-tG~~~~~la~-~g~~~v~~tD~~~~~l~~~~ 62 (191)
+.....++.+||=+|+| .|...+.+++ .|+.+|+++|.+++-++.++
T Consensus 185 ~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~ 233 (373)
T 1p0f_A 185 NTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAI 233 (373)
T ss_dssp TTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHH
T ss_pred hccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHH
Confidence 33445578899999987 4666665554 57768999999887776664
|
| >3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=85.60 E-value=3.9 Score=31.34 Aligned_cols=45 Identities=13% Similarity=0.214 Sum_probs=31.4
Q ss_pred CCCCCcEEEeCCC-cc-HHHHHHHhcCCCeEEEEcCChHHHHHHHHH
Q 038343 20 IFSNKSCFEVGSG-VG-LVGICLAHVKASKVTLTDGDHLTLANMRSN 64 (191)
Q Consensus 20 ~~~~~~VLElG~G-tG-~~~~~la~~g~~~v~~tD~~~~~l~~~~~n 64 (191)
...++++|=+|+| .| .+...+++.|+.+|+.++.+++-.+.+.+.
T Consensus 117 ~l~~k~~lvlGaGg~~~aia~~L~~~G~~~v~i~~R~~~~a~~la~~ 163 (272)
T 3pwz_A 117 PLRNRRVLLLGAGGAVRGALLPFLQAGPSELVIANRDMAKALALRNE 163 (272)
T ss_dssp CCTTSEEEEECCSHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHH
T ss_pred CccCCEEEEECccHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHH
Confidence 4578899999998 22 233356677877999999987655544433
|
| >2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* | Back alignment and structure |
|---|
Probab=85.44 E-value=3.1 Score=32.70 Aligned_cols=46 Identities=28% Similarity=0.390 Sum_probs=33.2
Q ss_pred hCCCCCCCCcEEEeCCC-ccHHHHHHHh-cCCCeEEEEcCChHHHHHHH
Q 038343 16 SFPEIFSNKSCFEVGSG-VGLVGICLAH-VKASKVTLTDGDHLTLANMR 62 (191)
Q Consensus 16 ~~~~~~~~~~VLElG~G-tG~~~~~la~-~g~~~v~~tD~~~~~l~~~~ 62 (191)
..... ++.+||-+|+| .|...+.+++ .|+++|+++|.+++-++.++
T Consensus 162 ~~~~~-~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~ 209 (348)
T 2d8a_A 162 LAGPI-SGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAK 209 (348)
T ss_dssp TTSCC-TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHH
T ss_pred HhcCC-CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH
Confidence 34455 88999999996 4655554444 57658999999887776665
|
| >1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=85.42 E-value=1.8 Score=34.47 Aligned_cols=46 Identities=20% Similarity=0.335 Sum_probs=33.6
Q ss_pred CCCCCCCCcEEEeCCC-ccHHHHHHHh-cCCCeEEEEcCChHHHHHHH
Q 038343 17 FPEIFSNKSCFEVGSG-VGLVGICLAH-VKASKVTLTDGDHLTLANMR 62 (191)
Q Consensus 17 ~~~~~~~~~VLElG~G-tG~~~~~la~-~g~~~v~~tD~~~~~l~~~~ 62 (191)
.....++.+||-+|+| .|...+.+++ .|+.+|+++|.+++-++.++
T Consensus 187 ~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~ 234 (374)
T 1cdo_A 187 TAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAK 234 (374)
T ss_dssp TTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHH
T ss_pred ccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHH
Confidence 3445578899999986 4666665554 57668999999888777664
|
| >3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A* | Back alignment and structure |
|---|
Probab=85.42 E-value=3.9 Score=36.08 Aligned_cols=151 Identities=12% Similarity=0.078 Sum_probs=86.0
Q ss_pred CcEEEeCCCcc--HHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCccc--ccccCCCCeeEEEeecCCCCCcC
Q 038343 24 KSCFEVGSGVG--LVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSL--LESYEDPNVVQCVHLPWESASES 99 (191)
Q Consensus 24 ~~VLElG~GtG--~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~--~~~~~~~~~i~~~~ldw~~~~~~ 99 (191)
++|-=||+|+= -++..++..|. .|++.|.+++.++..++.+..+-....... .........+... .+..
T Consensus 317 ~~v~ViGaG~MG~gIA~~~a~aG~-~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~----- 389 (742)
T 3zwc_A 317 SSVGVLGLGTMGRGIAISFARVGI-SVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRFS-SSTK----- 389 (742)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTC-EEEEECSSHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCCEEEE-SCGG-----
T ss_pred cEEEEEcccHHHHHHHHHHHhCCC-chhcccchHhhhhhHHHHHHHHHHHHHHhccccchhhhhhhhccc-CcHH-----
Confidence 47889999953 34446677777 999999999999887776543311000000 0000001111111 1111
Q ss_pred CCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCccccccCCCCcccccccCCCCcc-------ccccccCCCCE
Q 038343 100 GLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVSSSRKESSKGFTLDTKCNTNDLN-------DLTAVTSKGPV 172 (191)
Q Consensus 100 ~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~ 172 (191)
.+ ...|+||=+ ++.+.+.-..+++.+..+++|+ +++.+...+.+....++....- =..+.+..+-+
T Consensus 390 ~l--~~aDlVIEA-V~E~l~iK~~vf~~le~~~~~~----aIlASNTSsl~i~~ia~~~~~p~r~ig~HFfnP~~~m~LV 462 (742)
T 3zwc_A 390 EL--STVDLVVEA-VFEDMNLKKKVFAELSALCKPG----AFLCTNTSALNVDDIASSTDRPQLVIGTHFFSPAHVMRLL 462 (742)
T ss_dssp GG--GSCSEEEEC-CCSCHHHHHHHHHHHHHHSCTT----CEEEECCSSSCHHHHHTTSSCGGGEEEEECCSSTTTCCEE
T ss_pred HH--hhCCEEEEe-ccccHHHHHHHHHHHhhcCCCC----ceEEecCCcCChHHHHhhcCCccccccccccCCCCCCceE
Confidence 11 257999964 5667777888999999999988 4566666666666665543311 12233334445
Q ss_pred EEEEecccCHHHHHHh
Q 038343 173 AYIATVIRNIDTFNYF 188 (191)
Q Consensus 173 ~~va~~~r~~~~~~~f 188 (191)
=+|.+..-+++|++..
T Consensus 463 Evi~g~~Ts~e~~~~~ 478 (742)
T 3zwc_A 463 EVIPSRYSSPTTIATV 478 (742)
T ss_dssp EEEECSSCCHHHHHHH
T ss_pred EEecCCCCCHHHHHHH
Confidence 5555555567766553
|
| >3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=85.30 E-value=3.6 Score=30.74 Aligned_cols=80 Identities=14% Similarity=0.010 Sum_probs=53.2
Q ss_pred CCCCcEEEeCCCccH---HHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCC
Q 038343 21 FSNKSCFEVGSGVGL---VGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESAS 97 (191)
Q Consensus 21 ~~~~~VLElG~GtG~---~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~ 97 (191)
.+++++|=-|++.|+ +...+++.|+ +|+++|.+++.++.+.+.+...+ .++.+...|..+..
T Consensus 5 ~~~k~vlVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~--------------~~~~~~~~Dv~~~~ 69 (252)
T 3h7a_A 5 PRNATVAVIGAGDYIGAEIAKKFAAEGF-TVFAGRRNGEKLAPLVAEIEAAG--------------GRIVARSLDARNED 69 (252)
T ss_dssp CCSCEEEEECCSSHHHHHHHHHHHHTTC-EEEEEESSGGGGHHHHHHHHHTT--------------CEEEEEECCTTCHH
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC--------------CeEEEEECcCCCHH
Confidence 467788888888763 3445666787 89999999888877777665543 35677777766543
Q ss_pred cCC-------CCCCCCCEEEEccccc
Q 038343 98 ESG-------LSAFVPEIILGADILY 116 (191)
Q Consensus 98 ~~~-------~~~~~fDvIi~~d~ly 116 (191)
.-. -. ++.|++|.+--+.
T Consensus 70 ~v~~~~~~~~~~-g~id~lv~nAg~~ 94 (252)
T 3h7a_A 70 EVTAFLNAADAH-APLEVTIFNVGAN 94 (252)
T ss_dssp HHHHHHHHHHHH-SCEEEEEECCCCC
T ss_pred HHHHHHHHHHhh-CCceEEEECCCcC
Confidence 110 01 4689888654443
|
| >2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=85.27 E-value=2.7 Score=33.05 Aligned_cols=45 Identities=13% Similarity=0.127 Sum_probs=31.6
Q ss_pred CCCCCCCCcEEEeCCC--ccHHHHH-HHhcCCCeEEEEcCChHHHHHHH
Q 038343 17 FPEIFSNKSCFEVGSG--VGLVGIC-LAHVKASKVTLTDGDHLTLANMR 62 (191)
Q Consensus 17 ~~~~~~~~~VLElG~G--tG~~~~~-la~~g~~~v~~tD~~~~~l~~~~ 62 (191)
.....++++||-.|++ .|..... +...|+ +|+++|.+++-++.++
T Consensus 164 ~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga-~V~~~~~~~~~~~~~~ 211 (347)
T 2hcy_A 164 SANLMAGHWVAISGAAGGLGSLAVQYAKAMGY-RVLGIDGGEGKEELFR 211 (347)
T ss_dssp TTTCCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECSTTHHHHHH
T ss_pred hcCCCCCCEEEEECCCchHHHHHHHHHHHCCC-cEEEEcCCHHHHHHHH
Confidence 3345578899999983 5655553 444677 8999998877665554
|
| >3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=85.06 E-value=2.1 Score=33.93 Aligned_cols=100 Identities=15% Similarity=0.113 Sum_probs=58.2
Q ss_pred CCCCCCCcEEEeCCC-ccHHHHHHHh-cCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEe-----
Q 038343 18 PEIFSNKSCFEVGSG-VGLVGICLAH-VKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVH----- 90 (191)
Q Consensus 18 ~~~~~~~~VLElG~G-tG~~~~~la~-~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~----- 90 (191)
....++.+||=.|+| .|...+.+++ .|++.|+++|.+++-++.+++. ... .+....
T Consensus 175 ~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l-~~~----------------~~~~~~~~~~~ 237 (363)
T 3m6i_A 175 AGVRLGDPVLICGAGPIGLITMLCAKAAGACPLVITDIDEGRLKFAKEI-CPE----------------VVTHKVERLSA 237 (363)
T ss_dssp HTCCTTCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHH-CTT----------------CEEEECCSCCH
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-chh----------------cccccccccch
Confidence 344578899999987 4666665554 5775699999999888877653 111 011110
Q ss_pred ecCCCCCcCCCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCcc
Q 038343 91 LPWESASESGLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVSS 140 (191)
Q Consensus 91 ldw~~~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~~ 140 (191)
-+|.+..........+|+|+-+ .-.+..+....++|+++|....
T Consensus 238 ~~~~~~v~~~t~g~g~Dvvid~------~g~~~~~~~~~~~l~~~G~iv~ 281 (363)
T 3m6i_A 238 EESAKKIVESFGGIEPAVALEC------TGVESSIAAAIWAVKFGGKVFV 281 (363)
T ss_dssp HHHHHHHHHHTSSCCCSEEEEC------SCCHHHHHHHHHHSCTTCEEEE
T ss_pred HHHHHHHHHHhCCCCCCEEEEC------CCChHHHHHHHHHhcCCCEEEE
Confidence 0111000000123468998842 1234567788889999976543
|
| >3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=85.00 E-value=5.7 Score=29.35 Aligned_cols=80 Identities=16% Similarity=0.155 Sum_probs=52.1
Q ss_pred CCCCcEEEeCCCccH---HHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCC
Q 038343 21 FSNKSCFEVGSGVGL---VGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESAS 97 (191)
Q Consensus 21 ~~~~~VLElG~GtG~---~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~ 97 (191)
+.+++||=.|++.|+ +...+++.|+ +|+++|.+++.++.+.+.+...+ .++.+...|..+..
T Consensus 7 ~~~k~vlITGas~giG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~--------------~~~~~~~~D~~~~~ 71 (253)
T 3qiv_A 7 FENKVGIVTGSGGGIGQAYAEALAREGA-AVVVADINAEAAEAVAKQIVADG--------------GTAISVAVDVSDPE 71 (253)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT--------------CEEEEEECCTTSHH
T ss_pred cCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcC--------------CcEEEEEccCCCHH
Confidence 467889988877663 3445566787 89999999888887776665443 34666777766542
Q ss_pred cCC--C-----CCCCCCEEEEcccc
Q 038343 98 ESG--L-----SAFVPEIILGADIL 115 (191)
Q Consensus 98 ~~~--~-----~~~~fDvIi~~d~l 115 (191)
.-. + .-++.|++|.+--+
T Consensus 72 ~~~~~~~~~~~~~g~id~li~~Ag~ 96 (253)
T 3qiv_A 72 SAKAMADRTLAEFGGIDYLVNNAAI 96 (253)
T ss_dssp HHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCc
Confidence 110 0 11368999875443
|
| >3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=84.66 E-value=1.8 Score=34.03 Aligned_cols=44 Identities=14% Similarity=0.160 Sum_probs=32.6
Q ss_pred CCCCCCCcEEEeCCC-ccHHHHHHHh-cCCCeEEEEcCChHHHHHHH
Q 038343 18 PEIFSNKSCFEVGSG-VGLVGICLAH-VKASKVTLTDGDHLTLANMR 62 (191)
Q Consensus 18 ~~~~~~~~VLElG~G-tG~~~~~la~-~g~~~v~~tD~~~~~l~~~~ 62 (191)
....++.+||=.|+| .|...+.+++ .|+ +|+++|.+++-++.++
T Consensus 172 ~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~ 217 (348)
T 3two_A 172 SKVTKGTKVGVAGFGGLGSMAVKYAVAMGA-EVSVFARNEHKKQDAL 217 (348)
T ss_dssp TTCCTTCEEEEESCSHHHHHHHHHHHHTTC-EEEEECSSSTTHHHHH
T ss_pred cCCCCCCEEEEECCcHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHH
Confidence 345578899999987 4666665554 577 8999999887776664
|
| >2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A* | Back alignment and structure |
|---|
Probab=84.63 E-value=3.1 Score=33.03 Aligned_cols=46 Identities=24% Similarity=0.273 Sum_probs=33.5
Q ss_pred CCCCCCCCcEEEeCCC-ccHHHHHHHh-cCCCeEEEEcCChHHHHHHH
Q 038343 17 FPEIFSNKSCFEVGSG-VGLVGICLAH-VKASKVTLTDGDHLTLANMR 62 (191)
Q Consensus 17 ~~~~~~~~~VLElG~G-tG~~~~~la~-~g~~~v~~tD~~~~~l~~~~ 62 (191)
.....++.+||=+|+| .|...+.+++ .|+.+|+++|.+++-++.++
T Consensus 185 ~~~~~~g~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~ 232 (373)
T 2fzw_A 185 TAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAK 232 (373)
T ss_dssp TTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHH
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHH
Confidence 3445578899999986 4666664444 57768999999888777665
|
| >1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=84.63 E-value=3.2 Score=33.17 Aligned_cols=46 Identities=26% Similarity=0.385 Sum_probs=33.4
Q ss_pred CCC-CCCCCcEEEeCCC-ccHHHHHHHh-cCCCeEEEEcCChHHHHHHH
Q 038343 17 FPE-IFSNKSCFEVGSG-VGLVGICLAH-VKASKVTLTDGDHLTLANMR 62 (191)
Q Consensus 17 ~~~-~~~~~~VLElG~G-tG~~~~~la~-~g~~~v~~tD~~~~~l~~~~ 62 (191)
... ..++.+||-.|+| .|...+.+++ .|+.+|+++|.+++-++.++
T Consensus 189 ~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~ 237 (380)
T 1vj0_A 189 EYPESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAE 237 (380)
T ss_dssp TCSSCCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHH
T ss_pred hcCCCCCCCEEEEECcCHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHH
Confidence 344 5578899999976 5666665554 56459999999887776665
|
| >3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} | Back alignment and structure |
|---|
Probab=84.44 E-value=3.9 Score=32.41 Aligned_cols=46 Identities=22% Similarity=0.279 Sum_probs=33.8
Q ss_pred hCCCCCCCCcEEEeCCC-ccHHHHHHHh-cCCCeEEEEcCChHHHHHHH
Q 038343 16 SFPEIFSNKSCFEVGSG-VGLVGICLAH-VKASKVTLTDGDHLTLANMR 62 (191)
Q Consensus 16 ~~~~~~~~~~VLElG~G-tG~~~~~la~-~g~~~v~~tD~~~~~l~~~~ 62 (191)
+.....++.+||=+|+| .|...+.+++ .|+ +|+++|.+++-++.++
T Consensus 183 ~~~~~~~g~~VlV~G~G~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~ 230 (363)
T 3uog_A 183 EKGHLRAGDRVVVQGTGGVALFGLQIAKATGA-EVIVTSSSREKLDRAF 230 (363)
T ss_dssp TTTCCCTTCEEEEESSBHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHH
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEecCchhHHHHH
Confidence 34555688899999977 4666664444 677 8999999887776654
|
| >2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ... | Back alignment and structure |
|---|
Probab=84.42 E-value=2.1 Score=34.03 Aligned_cols=46 Identities=22% Similarity=0.308 Sum_probs=33.4
Q ss_pred CCCCCCCCcEEEeCCC-ccHHHHHHHh-cCCCeEEEEcCChHHHHHHH
Q 038343 17 FPEIFSNKSCFEVGSG-VGLVGICLAH-VKASKVTLTDGDHLTLANMR 62 (191)
Q Consensus 17 ~~~~~~~~~VLElG~G-tG~~~~~la~-~g~~~v~~tD~~~~~l~~~~ 62 (191)
.....++.+||-+|+| .|...+.+++ .|+.+|+++|.+++-++.++
T Consensus 186 ~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~ 233 (374)
T 2jhf_A 186 VAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAK 233 (374)
T ss_dssp TTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHH
T ss_pred ccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHH
Confidence 3445578899999987 4666664444 57668999999887776664
|
| >4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* | Back alignment and structure |
|---|
Probab=84.30 E-value=2.7 Score=33.52 Aligned_cols=96 Identities=16% Similarity=0.176 Sum_probs=57.7
Q ss_pred CCCCCCCcEEEeCCC-ccHHHHHHHh-cCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCC
Q 038343 18 PEIFSNKSCFEVGSG-VGLVGICLAH-VKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWES 95 (191)
Q Consensus 18 ~~~~~~~~VLElG~G-tG~~~~~la~-~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~ 95 (191)
....++.+||=.|+| .|...+.+++ .|+.+|+++|.+++-++.+++ .+.. ..++..+
T Consensus 178 ~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~----lGa~-----------------~vi~~~~ 236 (370)
T 4ej6_A 178 SGIKAGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEE----VGAT-----------------ATVDPSA 236 (370)
T ss_dssp HTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHH----HTCS-----------------EEECTTS
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----cCCC-----------------EEECCCC
Confidence 344578899999987 4666664444 677789999999887776653 2322 0111111
Q ss_pred CC-----cC--CCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCcc
Q 038343 96 AS-----ES--GLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVSS 140 (191)
Q Consensus 96 ~~-----~~--~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~~ 140 (191)
.. .. ....+.+|+|+-+ ......++...++|+++|....
T Consensus 237 ~~~~~~i~~~~~~~~gg~Dvvid~------~G~~~~~~~~~~~l~~~G~vv~ 282 (370)
T 4ej6_A 237 GDVVEAIAGPVGLVPGGVDVVIEC------AGVAETVKQSTRLAKAGGTVVI 282 (370)
T ss_dssp SCHHHHHHSTTSSSTTCEEEEEEC------SCCHHHHHHHHHHEEEEEEEEE
T ss_pred cCHHHHHHhhhhccCCCCCEEEEC------CCCHHHHHHHHHHhccCCEEEE
Confidence 10 00 0122368888742 2234677888889999876443
|
| >3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=83.84 E-value=5.8 Score=29.92 Aligned_cols=80 Identities=10% Similarity=0.079 Sum_probs=51.3
Q ss_pred CCCcEEEeCCCccH---HHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCc
Q 038343 22 SNKSCFEVGSGVGL---VGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASE 98 (191)
Q Consensus 22 ~~~~VLElG~GtG~---~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~ 98 (191)
.++++|=-|++.|+ ++..+++.|+ +|++++.+++.++.+.+.+...+ ..+.+...|..+...
T Consensus 3 ~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~l~~~~--------------~~~~~~~~Dv~d~~~ 67 (264)
T 3tfo_A 3 MDKVILITGASGGIGEGIARELGVAGA-KILLGARRQARIEAIATEIRDAG--------------GTALAQVLDVTDRHS 67 (264)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHTT--------------CEEEEEECCTTCHHH
T ss_pred CCCEEEEeCCccHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcC--------------CcEEEEEcCCCCHHH
Confidence 46788888887663 3345666787 89999999888877776665543 346666777665421
Q ss_pred CC--C-----CCCCCCEEEEccccc
Q 038343 99 SG--L-----SAFVPEIILGADILY 116 (191)
Q Consensus 99 ~~--~-----~~~~fDvIi~~d~ly 116 (191)
-. . .-++.|++|.+--+.
T Consensus 68 v~~~~~~~~~~~g~iD~lVnnAG~~ 92 (264)
T 3tfo_A 68 VAAFAQAAVDTWGRIDVLVNNAGVM 92 (264)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred HHHHHHHHHHHcCCCCEEEECCCCC
Confidence 10 0 114689988754443
|
| >3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5} | Back alignment and structure |
|---|
Probab=83.64 E-value=5.9 Score=29.61 Aligned_cols=81 Identities=12% Similarity=0.126 Sum_probs=51.9
Q ss_pred CCCCCcEEEeCCCccH---HHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCC
Q 038343 20 IFSNKSCFEVGSGVGL---VGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESA 96 (191)
Q Consensus 20 ~~~~~~VLElG~GtG~---~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~ 96 (191)
.+.+++||=.|++.|+ +...+++.|+ +|++++.++..++.+.+.+...+ .++.+...|..+.
T Consensus 26 ~l~~k~vlITGas~gIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~--------------~~~~~~~~D~~~~ 90 (262)
T 3rkr_A 26 SLSGQVAVVTGASRGIGAAIARKLGSLGA-RVVLTARDVEKLRAVEREIVAAG--------------GEAESHACDLSHS 90 (262)
T ss_dssp TTTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT--------------CEEEEEECCTTCH
T ss_pred ccCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHhC--------------CceeEEEecCCCH
Confidence 3567888888876652 2334556787 89999999888877776665543 3466677776554
Q ss_pred CcCC--C-----CCCCCCEEEEcccc
Q 038343 97 SESG--L-----SAFVPEIILGADIL 115 (191)
Q Consensus 97 ~~~~--~-----~~~~fDvIi~~d~l 115 (191)
.... + ..++.|++|.+--+
T Consensus 91 ~~v~~~~~~~~~~~g~id~lv~~Ag~ 116 (262)
T 3rkr_A 91 DAIAAFATGVLAAHGRCDVLVNNAGV 116 (262)
T ss_dssp HHHHHHHHHHHHHHSCCSEEEECCCC
T ss_pred HHHHHHHHHHHHhcCCCCEEEECCCc
Confidence 2110 0 11468999875443
|
| >3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=83.57 E-value=3.4 Score=30.89 Aligned_cols=80 Identities=14% Similarity=0.193 Sum_probs=50.4
Q ss_pred CCCCCcEEEeCCCccH---HHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCC
Q 038343 20 IFSNKSCFEVGSGVGL---VGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESA 96 (191)
Q Consensus 20 ~~~~~~VLElG~GtG~---~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~ 96 (191)
.+.++++|=-|++.|+ +...+++.|+ +|+++|.+++.++.+...+...+ .++.+...|..+.
T Consensus 3 ~l~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~--------------~~~~~~~~Dv~~~ 67 (257)
T 3imf_A 3 AMKEKVVIITGGSSGMGKGMATRFAKEGA-RVVITGRTKEKLEEAKLEIEQFP--------------GQILTVQMDVRNT 67 (257)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCCST--------------TCEEEEECCTTCH
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC--------------CcEEEEEccCCCH
Confidence 3567888888877663 3445666787 89999999887777665543222 3466677776654
Q ss_pred CcCC--C-----CCCCCCEEEEccc
Q 038343 97 SESG--L-----SAFVPEIILGADI 114 (191)
Q Consensus 97 ~~~~--~-----~~~~fDvIi~~d~ 114 (191)
..-. + .-++.|+++.+--
T Consensus 68 ~~v~~~~~~~~~~~g~id~lv~nAg 92 (257)
T 3imf_A 68 DDIQKMIEQIDEKFGRIDILINNAA 92 (257)
T ss_dssp HHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred HHHHHHHHHHHHHcCCCCEEEECCC
Confidence 2110 0 1136899886543
|
| >1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 | Back alignment and structure |
|---|
Probab=83.29 E-value=1.7 Score=31.05 Aligned_cols=93 Identities=10% Similarity=0.072 Sum_probs=53.4
Q ss_pred CCCCCCCcEEEeCCC--ccHHHH-HHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCC
Q 038343 18 PEIFSNKSCFEVGSG--VGLVGI-CLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWE 94 (191)
Q Consensus 18 ~~~~~~~~VLElG~G--tG~~~~-~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~ 94 (191)
....++++||-.|++ .|.... .+...|+ +|+++|.+++.++.+++ .+.. . ..+..
T Consensus 34 ~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~-~V~~~~~~~~~~~~~~~----~g~~--------------~---~~d~~ 91 (198)
T 1pqw_A 34 GRLSPGERVLIHSATGGVGMAAVSIAKMIGA-RIYTTAGSDAKREMLSR----LGVE--------------Y---VGDSR 91 (198)
T ss_dssp SCCCTTCEEEETTTTSHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHT----TCCS--------------E---EEETT
T ss_pred hCCCCCCEEEEeeCCChHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHH----cCCC--------------E---EeeCC
Confidence 445578899999953 554444 4445677 89999998876655432 2211 1 12322
Q ss_pred CCCc-----CCCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCc
Q 038343 95 SASE-----SGLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVS 139 (191)
Q Consensus 95 ~~~~-----~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~ 139 (191)
+... .......+|+|+-+ .- ...++...++|+++|...
T Consensus 92 ~~~~~~~~~~~~~~~~~D~vi~~--~g-----~~~~~~~~~~l~~~G~~v 134 (198)
T 1pqw_A 92 SVDFADEILELTDGYGVDVVLNS--LA-----GEAIQRGVQILAPGGRFI 134 (198)
T ss_dssp CSTHHHHHHHHTTTCCEEEEEEC--CC-----THHHHHHHHTEEEEEEEE
T ss_pred cHHHHHHHHHHhCCCCCeEEEEC--Cc-----hHHHHHHHHHhccCCEEE
Confidence 2110 00112368998853 21 246777788899987543
|
| >3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis} | Back alignment and structure |
|---|
Probab=83.28 E-value=5.6 Score=29.67 Aligned_cols=81 Identities=9% Similarity=0.046 Sum_probs=52.5
Q ss_pred CCCCCcEEEeCCCccH---HHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCC
Q 038343 20 IFSNKSCFEVGSGVGL---VGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESA 96 (191)
Q Consensus 20 ~~~~~~VLElG~GtG~---~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~ 96 (191)
.+.++++|=-|++.|+ +...+++.|+ +|+++|.+++.++.+.+.+...+ .++.+...|..+.
T Consensus 9 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~--------------~~~~~~~~Dv~d~ 73 (256)
T 3gaf_A 9 HLNDAVAIVTGAAAGIGRAIAGTFAKAGA-SVVVTDLKSEGAEAVAAAIRQAG--------------GKAIGLECNVTDE 73 (256)
T ss_dssp CCTTCEEEECSCSSHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHHHHHHTT--------------CCEEEEECCTTCH
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC--------------CcEEEEECCCCCH
Confidence 4578889988887763 3345666787 89999999888777766665543 3466677776554
Q ss_pred CcCC--C-----CCCCCCEEEEcccc
Q 038343 97 SESG--L-----SAFVPEIILGADIL 115 (191)
Q Consensus 97 ~~~~--~-----~~~~fDvIi~~d~l 115 (191)
..-. + .-++.|+++.+--+
T Consensus 74 ~~v~~~~~~~~~~~g~id~lv~nAg~ 99 (256)
T 3gaf_A 74 QHREAVIKAALDQFGKITVLVNNAGG 99 (256)
T ss_dssp HHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 2110 0 11368998875433
|
| >1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=83.22 E-value=2.7 Score=33.48 Aligned_cols=44 Identities=27% Similarity=0.294 Sum_probs=32.6
Q ss_pred CCCCCCcEEEeCCC-ccHHHHHHHh-cCCCeEEEEcCChHHHHHHHH
Q 038343 19 EIFSNKSCFEVGSG-VGLVGICLAH-VKASKVTLTDGDHLTLANMRS 63 (191)
Q Consensus 19 ~~~~~~~VLElG~G-tG~~~~~la~-~g~~~v~~tD~~~~~l~~~~~ 63 (191)
...++.+||-+|+| .|...+.+++ .|+ +|+++|.+++-++.+++
T Consensus 191 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga-~Vi~~~~~~~~~~~a~~ 236 (369)
T 1uuf_A 191 QAGPGKKVGVVGIGGLGHMGIKLAHAMGA-HVVAFTTSEAKREAAKA 236 (369)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHH
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH
Confidence 44578899999987 4666665554 577 79999998887776653
|
| >4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=83.11 E-value=3 Score=33.12 Aligned_cols=93 Identities=15% Similarity=0.132 Sum_probs=57.4
Q ss_pred CCCcEEEeC-CC-ccHHHHHHHhc-CCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCc
Q 038343 22 SNKSCFEVG-SG-VGLVGICLAHV-KASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASE 98 (191)
Q Consensus 22 ~~~~VLElG-~G-tG~~~~~la~~-g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~ 98 (191)
++.+||=.| +| .|...+.+++. +..+|+++|.+++-++.+++ .+.. ..++..+...
T Consensus 171 ~g~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~~~~~~~~~~----lGad-----------------~vi~~~~~~~ 229 (363)
T 4dvj_A 171 AAPAILIVGGAGGVGSIAVQIARQRTDLTVIATASRPETQEWVKS----LGAH-----------------HVIDHSKPLA 229 (363)
T ss_dssp SEEEEEEESTTSHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHH----TTCS-----------------EEECTTSCHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHH----cCCC-----------------EEEeCCCCHH
Confidence 677899998 55 67888877774 45599999998877766643 2321 1112111100
Q ss_pred ---CCCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCccc
Q 038343 99 ---SGLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVSSS 141 (191)
Q Consensus 99 ---~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~~~ 141 (191)
.....+.+|+|+-+ .-....++...++|+++|....+
T Consensus 230 ~~v~~~~~~g~Dvvid~------~g~~~~~~~~~~~l~~~G~iv~~ 269 (363)
T 4dvj_A 230 AEVAALGLGAPAFVFST------THTDKHAAEIADLIAPQGRFCLI 269 (363)
T ss_dssp HHHHTTCSCCEEEEEEC------SCHHHHHHHHHHHSCTTCEEEEC
T ss_pred HHHHHhcCCCceEEEEC------CCchhhHHHHHHHhcCCCEEEEE
Confidence 01223468887742 23445778888899999865543
|
| >3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=83.04 E-value=6.8 Score=30.04 Aligned_cols=80 Identities=15% Similarity=0.121 Sum_probs=52.2
Q ss_pred CCCCcEEEeCCCccH---HHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCC
Q 038343 21 FSNKSCFEVGSGVGL---VGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESAS 97 (191)
Q Consensus 21 ~~~~~VLElG~GtG~---~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~ 97 (191)
+.+++||=.|++.|+ +...+++.|+ +|++++.++..++.+.+.+...+ .++.+...|..+..
T Consensus 29 l~gk~vlVTGas~gIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~--------------~~~~~~~~Dv~d~~ 93 (301)
T 3tjr_A 29 FDGRAAVVTGGASGIGLATATEFARRGA-RLVLSDVDQPALEQAVNGLRGQG--------------FDAHGVVCDVRHLD 93 (301)
T ss_dssp STTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT--------------CCEEEEECCTTCHH
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcC--------------CceEEEEccCCCHH
Confidence 567889999888663 3345666787 89999999988887776665543 24666777765542
Q ss_pred cCC--C-----CCCCCCEEEEcccc
Q 038343 98 ESG--L-----SAFVPEIILGADIL 115 (191)
Q Consensus 98 ~~~--~-----~~~~fDvIi~~d~l 115 (191)
.-. . ..++.|++|.+--+
T Consensus 94 ~v~~~~~~~~~~~g~id~lvnnAg~ 118 (301)
T 3tjr_A 94 EMVRLADEAFRLLGGVDVVFSNAGI 118 (301)
T ss_dssp HHHHHHHHHHHHHSSCSEEEECCCC
T ss_pred HHHHHHHHHHHhCCCCCEEEECCCc
Confidence 110 0 11368998875443
|
| >4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A | Back alignment and structure |
|---|
Probab=82.97 E-value=4.3 Score=30.46 Aligned_cols=79 Identities=15% Similarity=0.067 Sum_probs=51.2
Q ss_pred CCCCCcEEEeCCC----cc-HHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCC
Q 038343 20 IFSNKSCFEVGSG----VG-LVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWE 94 (191)
Q Consensus 20 ~~~~~~VLElG~G----tG-~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~ 94 (191)
.++|+++|=-|++ -| .++..+++.|+ +|+++|.+++.++.+.+.++..+. .++.+...|..
T Consensus 3 ~l~gK~alVTGaa~~~GIG~aiA~~la~~Ga-~Vvi~~r~~~~~~~~~~~~~~~~~-------------~~~~~~~~Dv~ 68 (256)
T 4fs3_A 3 NLENKTYVIMGIANKRSIAFGVAKVLDQLGA-KLVFTYRKERSRKELEKLLEQLNQ-------------PEAHLYQIDVQ 68 (256)
T ss_dssp CCTTCEEEEECCCSTTCHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHHGGGTC-------------SSCEEEECCTT
T ss_pred CCCCCEEEEECCCCCchHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCC-------------CcEEEEEccCC
Confidence 3578899998853 34 45567788898 899999998888777766544321 23556667765
Q ss_pred CCCcCC-------CCCCCCCEEEEc
Q 038343 95 SASESG-------LSAFVPEIILGA 112 (191)
Q Consensus 95 ~~~~~~-------~~~~~fDvIi~~ 112 (191)
+...-. -.-++.|+++.+
T Consensus 69 ~~~~v~~~~~~~~~~~G~iD~lvnn 93 (256)
T 4fs3_A 69 SDEEVINGFEQIGKDVGNIDGVYHS 93 (256)
T ss_dssp CHHHHHHHHHHHHHHHCCCSEEEEC
T ss_pred CHHHHHHHHHHHHHHhCCCCEEEec
Confidence 542110 012578988864
|
| >1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A | Back alignment and structure |
|---|
Probab=82.96 E-value=6.2 Score=31.18 Aligned_cols=112 Identities=13% Similarity=0.069 Sum_probs=61.3
Q ss_pred CCCcEEEeCCCccHHHHHHHhc-CCCeEEEEcCChHHHHHHHHHHHHhcCC--------CCcccccccCCCCeeEEEeec
Q 038343 22 SNKSCFEVGSGVGLVGICLAHV-KASKVTLTDGDHLTLANMRSNLELNQLS--------TDTSLLESYEDPNVVQCVHLP 92 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~-g~~~v~~tD~~~~~l~~~~~n~~~n~~~--------~~~~~~~~~~~~~~i~~~~ld 92 (191)
+...|+.||||......-+... +...++=+|. |++++.-++.+...+.. .............+......|
T Consensus 97 ~~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~-P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~v~~D 175 (334)
T 1rjd_A 97 EKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDY-NESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAACD 175 (334)
T ss_dssp SSEEEEEETCTTCCTHHHHHHHCTTEEEEEEEC-HHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEECC
T ss_pred CCcEEEEeCCCCccHHHHhcCcCCCCEEEECCC-HHHHHHHHHHhhhccchhhhcccccccccccccccCCCceEEEecC
Confidence 3468999999988666655443 2226777787 78877666665554210 000000000011346666666
Q ss_pred CCCCCc-----CCC-CCCCCCEEEEcccccCC--CChHHHHHHHHHHhccC
Q 038343 93 WESASE-----SGL-SAFVPEIILGADILYDR--SCFPDLVRILAILLNRR 135 (191)
Q Consensus 93 w~~~~~-----~~~-~~~~fDvIi~~d~ly~~--~~~~~ll~~l~~ll~~~ 135 (191)
..+..- ... ......++++-.++++. +....+++.+...+ |+
T Consensus 176 L~d~~w~~~ll~~~~d~~~Ptl~iaEgvL~YL~~~~~~~ll~~ia~~~-~~ 225 (334)
T 1rjd_A 176 LNDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKF-SH 225 (334)
T ss_dssp TTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHC-SS
T ss_pred CCCcHHHHHHHHhcCCCCCCEEEEEcchhhCCCHHHHHHHHHHHHhhC-CC
Confidence 554210 011 22457888887777754 45666777777765 44
|
| >3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=82.82 E-value=5.5 Score=30.07 Aligned_cols=80 Identities=11% Similarity=0.136 Sum_probs=48.4
Q ss_pred CCCCcEEEeCCCccH---HHHHHHhcCCCeEEEEcCChHH-------HHHHHHHHHHhcCCCCcccccccCCCCeeEEEe
Q 038343 21 FSNKSCFEVGSGVGL---VGICLAHVKASKVTLTDGDHLT-------LANMRSNLELNQLSTDTSLLESYEDPNVVQCVH 90 (191)
Q Consensus 21 ~~~~~VLElG~GtG~---~~~~la~~g~~~v~~tD~~~~~-------l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ 90 (191)
+.++++|=-|++.|+ +...+++.|+ +|++++.+... ++.+...+...+ .++.+..
T Consensus 4 l~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~ 68 (274)
T 3e03_A 4 LSGKTLFITGASRGIGLAIALRAARDGA-NVAIAAKSAVANPKLPGTIHSAAAAVNAAG--------------GQGLALK 68 (274)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCCSCCTTSCCCHHHHHHHHHHHT--------------SEEEEEE
T ss_pred CCCcEEEEECCCChHHHHHHHHHHHCCC-EEEEEeccchhhhhhHHHHHHHHHHHHhcC--------------CeEEEEe
Confidence 467889999988773 3445667787 89999987542 344444443333 3566777
Q ss_pred ecCCCCCcCC-----C--CCCCCCEEEEcccc
Q 038343 91 LPWESASESG-----L--SAFVPEIILGADIL 115 (191)
Q Consensus 91 ldw~~~~~~~-----~--~~~~fDvIi~~d~l 115 (191)
.|..+...-. . .-++.|++|.+--+
T Consensus 69 ~Dv~~~~~v~~~~~~~~~~~g~iD~lvnnAG~ 100 (274)
T 3e03_A 69 CDIREEDQVRAAVAATVDTFGGIDILVNNASA 100 (274)
T ss_dssp CCTTCHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCCEEEECCCc
Confidence 7766543110 0 11468998875443
|
| >3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A* | Back alignment and structure |
|---|
Probab=82.77 E-value=2.6 Score=33.08 Aligned_cols=95 Identities=16% Similarity=0.147 Sum_probs=57.0
Q ss_pred CCCCCCcEEEeCCC-ccHHHHHHHh-cCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCC
Q 038343 19 EIFSNKSCFEVGSG-VGLVGICLAH-VKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESA 96 (191)
Q Consensus 19 ~~~~~~~VLElG~G-tG~~~~~la~-~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~ 96 (191)
...++.+||=+|+| .|...+.+++ .|..+|+++|.+++-++.+++ .+.. .+ ++..+.
T Consensus 168 ~~~~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~~~----lGa~---------------~~--i~~~~~ 226 (345)
T 3jv7_A 168 LLGPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALARE----VGAD---------------AA--VKSGAG 226 (345)
T ss_dssp GCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHH----TTCS---------------EE--EECSTT
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH----cCCC---------------EE--EcCCCc
Confidence 45578899999987 4766665555 445699999999887776643 2321 01 111111
Q ss_pred CcCC----CCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCcc
Q 038343 97 SESG----LSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVSS 140 (191)
Q Consensus 97 ~~~~----~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~~ 140 (191)
.... .....+|+|+-+ .-.+..++...++|+++|....
T Consensus 227 ~~~~v~~~t~g~g~d~v~d~------~G~~~~~~~~~~~l~~~G~iv~ 268 (345)
T 3jv7_A 227 AADAIRELTGGQGATAVFDF------VGAQSTIDTAQQVVAVDGHISV 268 (345)
T ss_dssp HHHHHHHHHGGGCEEEEEES------SCCHHHHHHHHHHEEEEEEEEE
T ss_pred HHHHHHHHhCCCCCeEEEEC------CCCHHHHHHHHHHHhcCCEEEE
Confidence 0000 112368888742 2234577888889999876443
|
| >3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber} | Back alignment and structure |
|---|
Probab=82.68 E-value=5.7 Score=30.10 Aligned_cols=83 Identities=16% Similarity=0.059 Sum_probs=49.9
Q ss_pred CCCCCCcEEEeCCCccH---HHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCC
Q 038343 19 EIFSNKSCFEVGSGVGL---VGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWES 95 (191)
Q Consensus 19 ~~~~~~~VLElG~GtG~---~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~ 95 (191)
+...++++|=-|++.|+ +...+++.|+ +|++++.+++.++.+.+.+...+ .++.+...|..+
T Consensus 20 ~m~~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~l~~~~--------------~~~~~~~~Dv~d 84 (279)
T 3sju_A 20 HMSRPQTAFVTGVSSGIGLAVARTLAARGI-AVYGCARDAKNVSAAVDGLRAAG--------------HDVDGSSCDVTS 84 (279)
T ss_dssp -----CEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTT--------------CCEEEEECCTTC
T ss_pred cccCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC--------------CcEEEEECCCCC
Confidence 34567889988887663 3445666787 89999999887777666554433 346667777655
Q ss_pred CCcCC--C-----CCCCCCEEEEccccc
Q 038343 96 ASESG--L-----SAFVPEIILGADILY 116 (191)
Q Consensus 96 ~~~~~--~-----~~~~fDvIi~~d~ly 116 (191)
...-. + .-++.|++|.+--+.
T Consensus 85 ~~~v~~~~~~~~~~~g~id~lv~nAg~~ 112 (279)
T 3sju_A 85 TDEVHAAVAAAVERFGPIGILVNSAGRN 112 (279)
T ss_dssp HHHHHHHHHHHHHHHCSCCEEEECCCCC
T ss_pred HHHHHHHHHHHHHHcCCCcEEEECCCCC
Confidence 42110 0 114689988754443
|
| >3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A* | Back alignment and structure |
|---|
Probab=82.65 E-value=2.6 Score=33.21 Aligned_cols=151 Identities=13% Similarity=0.009 Sum_probs=80.1
Q ss_pred CcEEEeCCCc-c-HHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccC-----CCCeeEEEeecCCCC
Q 038343 24 KSCFEVGSGV-G-LVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYE-----DPNVVQCVHLPWESA 96 (191)
Q Consensus 24 ~~VLElG~Gt-G-~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~-----~~~~i~~~~ldw~~~ 96 (191)
.+|-=||+|+ | -++..++..|. .|++.|.+++.++.+.++++.+-............ .-.++... .+..+
T Consensus 7 ~~VaViGaG~MG~giA~~~a~~G~-~V~l~D~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~l~~i~~~-~~l~~- 83 (319)
T 3ado_A 7 GDVLIVGSGLVGRSWAMLFASGGF-RVKLYDIEPRQITGALENIRKEMKSLQQSGSLKGSLSAEEQLSLISSC-TNLAE- 83 (319)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC-CEEEECSCHHHHHHHHHHHHHHHHHHHHTTCCCSSSCHHHHHHTEEEE-CCHHH-
T ss_pred CeEEEECCcHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCCccCHHHHHhhcccc-cchHh-
Confidence 4788899983 3 34556677777 89999999999888777665432100000000000 00011111 11100
Q ss_pred CcCCCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCccccccCCCCcccccccCCCCcc-------ccccccCC
Q 038343 97 SESGLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVSSSRKESSKGFTLDTKCNTNDLN-------DLTAVTSK 169 (191)
Q Consensus 97 ~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~ 169 (191)
.+ ...|+|+=+ +..+.+.-..+++.|.++++|+ ++..+..++.+....++....- -..+.+..
T Consensus 84 ---a~--~~ad~ViEa-v~E~l~iK~~lf~~l~~~~~~~----aIlaSNTSsl~is~ia~~~~~p~r~ig~HffNP~~~m 153 (319)
T 3ado_A 84 ---AV--EGVVHIQEC-VPENLDLKRKIFAQLDSIVDDR----VVLSSSSSCLLPSKLFTGLAHVKQCIVAHPVNPPYYI 153 (319)
T ss_dssp ---HT--TTEEEEEEC-CCSCHHHHHHHHHHHHTTCCSS----SEEEECCSSCCHHHHHTTCTTGGGEEEEEECSSTTTC
T ss_pred ---Hh--ccCcEEeec-cccHHHHHHHHHHHHHHHhhhc----ceeehhhhhccchhhhhhccCCCcEEEecCCCCcccc
Confidence 01 246777743 4445555677778888887777 4566666666666665553311 12233333
Q ss_pred CCEEEEEecccCHHHHHH
Q 038343 170 GPVAYIATVIRNIDTFNY 187 (191)
Q Consensus 170 ~~~~~va~~~r~~~~~~~ 187 (191)
+-+=+|.+..-++++.+.
T Consensus 154 ~LVEiv~g~~Ts~~~~~~ 171 (319)
T 3ado_A 154 PLVELVPHPETSPATVDR 171 (319)
T ss_dssp CEEEEEECTTCCHHHHHH
T ss_pred chHHhcCCCCCcHHHHHH
Confidence 344455555556666554
|
| >2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A* | Back alignment and structure |
|---|
Probab=82.40 E-value=9.2 Score=28.26 Aligned_cols=79 Identities=15% Similarity=0.148 Sum_probs=49.1
Q ss_pred CCCCcEEEeCCCccH---HHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCC
Q 038343 21 FSNKSCFEVGSGVGL---VGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESAS 97 (191)
Q Consensus 21 ~~~~~VLElG~GtG~---~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~ 97 (191)
+.++++|=.|++.|+ +...+++.|+ +|++++.+++.++.+.+.+...+ .++.+...|..+..
T Consensus 5 l~~k~~lVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~--------------~~~~~~~~Dv~~~~ 69 (247)
T 2jah_A 5 LQGKVALITGASSGIGEATARALAAEGA-AVAIAARRVEKLRALGDELTAAG--------------AKVHVLELDVADRQ 69 (247)
T ss_dssp TTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT--------------CCEEEEECCTTCHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcC--------------CcEEEEECCCCCHH
Confidence 467789988877663 3335566787 89999998887776665554432 24566667765432
Q ss_pred cCC--C-----CCCCCCEEEEccc
Q 038343 98 ESG--L-----SAFVPEIILGADI 114 (191)
Q Consensus 98 ~~~--~-----~~~~fDvIi~~d~ 114 (191)
.-. + .-++.|+++.+--
T Consensus 70 ~~~~~~~~~~~~~g~id~lv~nAg 93 (247)
T 2jah_A 70 GVDAAVASTVEALGGLDILVNNAG 93 (247)
T ss_dssp HHHHHHHHHHHHHSCCSEEEECCC
T ss_pred HHHHHHHHHHHHcCCCCEEEECCC
Confidence 110 0 0136898886443
|
| >1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A* | Back alignment and structure |
|---|
Probab=81.60 E-value=4.3 Score=31.86 Aligned_cols=44 Identities=18% Similarity=0.230 Sum_probs=31.5
Q ss_pred CCCCCCCcEEEeCCCc--cHHHH-HHHhc-CCCeEEEEcCChHHHHHHH
Q 038343 18 PEIFSNKSCFEVGSGV--GLVGI-CLAHV-KASKVTLTDGDHLTLANMR 62 (191)
Q Consensus 18 ~~~~~~~~VLElG~Gt--G~~~~-~la~~-g~~~v~~tD~~~~~l~~~~ 62 (191)
....++.+||-.|+|+ |...+ .+... |+ +|+++|.+++-++.++
T Consensus 166 ~~~~~g~~vlV~Gagg~iG~~~~~~a~~~~Ga-~Vi~~~~~~~~~~~~~ 213 (347)
T 1jvb_A 166 ASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGA-TIIGVDVREEAVEAAK 213 (347)
T ss_dssp TTCCTTCEEEEETTTSHHHHHHHHHHHHHTCC-EEEEEESSHHHHHHHH
T ss_pred cCCCCCCEEEEECCCccHHHHHHHHHHHcCCC-eEEEEcCCHHHHHHHH
Confidence 3445788999999884 44444 34445 77 8999999888777664
|
| >3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus musculus} PDB: 3av5_A* 3av6_A* | Back alignment and structure |
|---|
Probab=81.53 E-value=2.1 Score=40.20 Aligned_cols=44 Identities=14% Similarity=0.027 Sum_probs=37.0
Q ss_pred CCCcEEEeCCCccHHHHHHHhcCC-CeEEEEcCChHHHHHHHHHH
Q 038343 22 SNKSCFEVGSGVGLVGICLAHVKA-SKVTLTDGDHLTLANMRSNL 65 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~g~-~~v~~tD~~~~~l~~~~~n~ 65 (191)
+..+++||.||.|.+++-+.+.|. ..+.++|+++.+.+..+.|.
T Consensus 850 ~~l~viDLFsG~GGlslGfe~AG~~~vv~avEid~~A~~ty~~N~ 894 (1330)
T 3av4_A 850 PKLRTLDVFSGCGGLSEGFHQAGISETLWAIEMWDPAAQAFRLNN 894 (1330)
T ss_dssp CCEEEEEETCTTSHHHHHHHHTTSEEEEEEECCSHHHHHHHHHHC
T ss_pred CCceEEecccCccHHHHHHHHCCCCceEEEEECCHHHHHHHHHhC
Confidence 345899999999999998888886 56899999999988877764
|
| >1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A* | Back alignment and structure |
|---|
Probab=81.46 E-value=5.2 Score=31.09 Aligned_cols=45 Identities=16% Similarity=0.087 Sum_probs=31.9
Q ss_pred hCCCCCCCCcEEEeCCC--ccHHHH-HHHhcCCCeEEEEcCChHHHHHH
Q 038343 16 SFPEIFSNKSCFEVGSG--VGLVGI-CLAHVKASKVTLTDGDHLTLANM 61 (191)
Q Consensus 16 ~~~~~~~~~~VLElG~G--tG~~~~-~la~~g~~~v~~tD~~~~~l~~~ 61 (191)
+.....++++||-.|++ .|.... .+...|+ +|+++|.+++.++.+
T Consensus 139 ~~~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~-~V~~~~~~~~~~~~~ 186 (333)
T 1v3u_A 139 EVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGC-KVVGAAGSDEKIAYL 186 (333)
T ss_dssp TTSCCCSSCEEEEESTTBHHHHHHHHHHHHTTC-EEEEEESSHHHHHHH
T ss_pred HhhCCCCCCEEEEecCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence 34455578899999983 555444 4445777 899999988776655
|
| >1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A* | Back alignment and structure |
|---|
Probab=81.23 E-value=4.2 Score=32.29 Aligned_cols=35 Identities=17% Similarity=0.241 Sum_probs=27.1
Q ss_pred CCCCcEEEeCCC-cc-HHHHHHHhcCCCeEEEEcCCh
Q 038343 21 FSNKSCFEVGSG-VG-LVGICLAHVKASKVTLTDGDH 55 (191)
Q Consensus 21 ~~~~~VLElG~G-tG-~~~~~la~~g~~~v~~tD~~~ 55 (191)
+.+.+||=+||| .| .+...++..|.++++.+|.+.
T Consensus 34 L~~~~VlivG~GGlG~~ia~~La~~Gvg~itlvD~d~ 70 (346)
T 1y8q_A 34 LRASRVLLVGLKGLGAEIAKNLILAGVKGLTMLDHEQ 70 (346)
T ss_dssp HHTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred HhCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEECCC
Confidence 356799999998 56 445578888999999999753
|
| >4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A* | Back alignment and structure |
|---|
Probab=81.21 E-value=3.8 Score=32.04 Aligned_cols=44 Identities=18% Similarity=0.078 Sum_probs=30.6
Q ss_pred CCCCCCcEEEeCCCcc-HHHH-HHHhcCCCeEEEEcCChHHHHHHH
Q 038343 19 EIFSNKSCFEVGSGVG-LVGI-CLAHVKASKVTLTDGDHLTLANMR 62 (191)
Q Consensus 19 ~~~~~~~VLElG~GtG-~~~~-~la~~g~~~v~~tD~~~~~l~~~~ 62 (191)
...++.+||=+|+|.+ ...+ .+++.+..+|+++|.+++-++.++
T Consensus 160 ~~~~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~~~r~~~~~ 205 (348)
T 4eez_A 160 GVKPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDINQDKLNLAK 205 (348)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHH
T ss_pred CCCCCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECcHHHhhhhh
Confidence 3457889999999843 4444 444465669999999887655544
|
| >3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=81.11 E-value=9.1 Score=28.49 Aligned_cols=82 Identities=18% Similarity=0.146 Sum_probs=52.9
Q ss_pred CCCCcEEEeCC-CccH---HHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCC
Q 038343 21 FSNKSCFEVGS-GVGL---VGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESA 96 (191)
Q Consensus 21 ~~~~~VLElG~-GtG~---~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~ 96 (191)
+.+++||=.|+ |.|+ +...+++.|+ +|+++|.++..++.+.+.+..... .++.+...|..+.
T Consensus 20 l~~k~vlITGasg~GIG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~-------------~~~~~~~~Dl~~~ 85 (266)
T 3o38_A 20 LKGKVVLVTAAAGTGIGSTTARRALLEGA-DVVISDYHERRLGETRDQLADLGL-------------GRVEAVVCDVTST 85 (266)
T ss_dssp TTTCEEEESSCSSSSHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTCS-------------SCEEEEECCTTCH
T ss_pred CCCCEEEEECCCCCchHHHHHHHHHHCCC-EEEEecCCHHHHHHHHHHHHhcCC-------------CceEEEEeCCCCH
Confidence 56788999987 5663 4446677787 899999998877777665543321 3567777777654
Q ss_pred CcCC--C-----CCCCCCEEEEccccc
Q 038343 97 SESG--L-----SAFVPEIILGADILY 116 (191)
Q Consensus 97 ~~~~--~-----~~~~fDvIi~~d~ly 116 (191)
..-. + .-++.|++|.+--+.
T Consensus 86 ~~v~~~~~~~~~~~g~id~li~~Ag~~ 112 (266)
T 3o38_A 86 EAVDALITQTVEKAGRLDVLVNNAGLG 112 (266)
T ss_dssp HHHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred HHHHHHHHHHHHHhCCCcEEEECCCcC
Confidence 3110 0 113689998755443
|
| >4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A | Back alignment and structure |
|---|
Probab=81.03 E-value=8.9 Score=28.75 Aligned_cols=85 Identities=15% Similarity=0.125 Sum_probs=51.4
Q ss_pred CCCCCCCCcEEEeCCCccH---HHHHHHhcCCCeEEEEcC-ChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeec
Q 038343 17 FPEIFSNKSCFEVGSGVGL---VGICLAHVKASKVTLTDG-DHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLP 92 (191)
Q Consensus 17 ~~~~~~~~~VLElG~GtG~---~~~~la~~g~~~v~~tD~-~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ld 92 (191)
+.-.+.+++||=.|++.|+ +...+++.|+ +|++++. ++...+.+.+.++..+ .++.+...|
T Consensus 23 ~~m~l~~k~vlITGas~gIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~--------------~~~~~~~~D 87 (271)
T 4iin_A 23 NAMQFTGKNVLITGASKGIGAEIAKTLASMGL-KVWINYRSNAEVADALKNELEEKG--------------YKAAVIKFD 87 (271)
T ss_dssp -CCCCSCCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTT--------------CCEEEEECC
T ss_pred hhcccCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCCHHHHHHHHHHHHhcC--------------CceEEEECC
Confidence 3334678889988887663 3345666787 8999987 5666666665555443 346667777
Q ss_pred CCCCCcCC--C-----CCCCCCEEEEccccc
Q 038343 93 WESASESG--L-----SAFVPEIILGADILY 116 (191)
Q Consensus 93 w~~~~~~~--~-----~~~~fDvIi~~d~ly 116 (191)
..+..... + ..++.|++|.+--+.
T Consensus 88 ~~~~~~v~~~~~~~~~~~g~id~li~nAg~~ 118 (271)
T 4iin_A 88 AASESDFIEAIQTIVQSDGGLSYLVNNAGVV 118 (271)
T ss_dssp TTCHHHHHHHHHHHHHHHSSCCEEEECCCCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCEEEECCCcC
Confidence 65432110 0 113689988754443
|
| >4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli} | Back alignment and structure |
|---|
Probab=80.87 E-value=4.2 Score=31.75 Aligned_cols=45 Identities=29% Similarity=0.346 Sum_probs=32.3
Q ss_pred CCCCCCCcEEEeCCC-ccHHHHHH-HhcCCCeEEEEcCChHHHHHHH
Q 038343 18 PEIFSNKSCFEVGSG-VGLVGICL-AHVKASKVTLTDGDHLTLANMR 62 (191)
Q Consensus 18 ~~~~~~~~VLElG~G-tG~~~~~l-a~~g~~~v~~tD~~~~~l~~~~ 62 (191)
....++.+||=.|+| .|..++.+ ...|+..++++|.+++-++.++
T Consensus 156 ~~~~~g~~VlV~GaG~vG~~aiq~ak~~G~~~vi~~~~~~~k~~~a~ 202 (346)
T 4a2c_A 156 AQGCENKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDISSEKLALAK 202 (346)
T ss_dssp TTCCTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHH
T ss_pred hccCCCCEEEEECCCCcchHHHHHHHHcCCcEEEEEechHHHHHHHH
Confidence 344578899999987 45555544 4467777899999887666664
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=80.79 E-value=3.4 Score=27.66 Aligned_cols=39 Identities=18% Similarity=0.130 Sum_probs=27.2
Q ss_pred CCcEEEeCCC-cc-HHHHHHHhcCCCeEEEEcCChHHHHHHH
Q 038343 23 NKSCFEVGSG-VG-LVGICLAHVKASKVTLTDGDHLTLANMR 62 (191)
Q Consensus 23 ~~~VLElG~G-tG-~~~~~la~~g~~~v~~tD~~~~~l~~~~ 62 (191)
.++|+=+|+| .| .+...+.+.|. +|+++|.+++.++.++
T Consensus 6 ~~~v~I~G~G~iG~~la~~L~~~g~-~V~~id~~~~~~~~~~ 46 (141)
T 3llv_A 6 RYEYIVIGSEAAGVGLVRELTAAGK-KVLAVDKSKEKIELLE 46 (141)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTC-CEEEEESCHHHHHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCC-eEEEEECCHHHHHHHH
Confidence 4578999987 33 23334555676 8999999988766554
|
| >2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=80.61 E-value=3 Score=32.72 Aligned_cols=43 Identities=7% Similarity=0.053 Sum_probs=32.2
Q ss_pred CCCCCCcEEEeCCC-ccHHHHHHHh-c--CCCeEEEEcCChHHHHHHHH
Q 038343 19 EIFSNKSCFEVGSG-VGLVGICLAH-V--KASKVTLTDGDHLTLANMRS 63 (191)
Q Consensus 19 ~~~~~~~VLElG~G-tG~~~~~la~-~--g~~~v~~tD~~~~~l~~~~~ 63 (191)
.. ++.+||-+|+| .|...+.+++ . |+ +|+++|.+++-++.+++
T Consensus 168 ~~-~g~~VlV~GaG~vG~~aiqlak~~~~Ga-~Vi~~~~~~~~~~~~~~ 214 (344)
T 2h6e_A 168 KF-AEPVVIVNGIGGLAVYTIQILKALMKNI-TIVGISRSKKHRDFALE 214 (344)
T ss_dssp TC-SSCEEEEECCSHHHHHHHHHHHHHCTTC-EEEEECSCHHHHHHHHH
T ss_pred CC-CCCEEEEECCCHHHHHHHHHHHHhcCCC-EEEEEeCCHHHHHHHHH
Confidence 45 88899999987 4666665554 5 77 79999998887776653
|
| >3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum} | Back alignment and structure |
|---|
Probab=80.60 E-value=6.4 Score=29.83 Aligned_cols=81 Identities=14% Similarity=0.112 Sum_probs=51.9
Q ss_pred CCCCcEEEeCCCccH---HHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCC
Q 038343 21 FSNKSCFEVGSGVGL---VGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESAS 97 (191)
Q Consensus 21 ~~~~~VLElG~GtG~---~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~ 97 (191)
+.++++|=-|++.|+ +...+++.|+ +|++++.+++.++.+.+.+...+ .++.+...|..+..
T Consensus 30 l~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~--------------~~~~~~~~Dl~d~~ 94 (276)
T 3r1i_A 30 LSGKRALITGASTGIGKKVALAYAEAGA-QVAVAARHSDALQVVADEIAGVG--------------GKALPIRCDVTQPD 94 (276)
T ss_dssp CTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESSGGGGHHHHHHHHHTT--------------CCCEEEECCTTCHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC--------------CeEEEEEcCCCCHH
Confidence 467889988887663 3445666787 89999998887777766665543 24556677765542
Q ss_pred cCC--C-----CCCCCCEEEEccccc
Q 038343 98 ESG--L-----SAFVPEIILGADILY 116 (191)
Q Consensus 98 ~~~--~-----~~~~fDvIi~~d~ly 116 (191)
.-. + .-++.|++|.+--+.
T Consensus 95 ~v~~~~~~~~~~~g~iD~lvnnAg~~ 120 (276)
T 3r1i_A 95 QVRGMLDQMTGELGGIDIAVCNAGIV 120 (276)
T ss_dssp HHHHHHHHHHHHHSCCSEEEECCCCC
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCCC
Confidence 110 0 113689998754443
|
| >3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=80.51 E-value=3.1 Score=33.53 Aligned_cols=44 Identities=23% Similarity=0.382 Sum_probs=33.1
Q ss_pred CCCCCCcEEEeCCC-ccHHHHHHHh-cCCCeEEEEcCChHHHHHHH
Q 038343 19 EIFSNKSCFEVGSG-VGLVGICLAH-VKASKVTLTDGDHLTLANMR 62 (191)
Q Consensus 19 ~~~~~~~VLElG~G-tG~~~~~la~-~g~~~v~~tD~~~~~l~~~~ 62 (191)
...++.+||=+|+| .|...+.+++ .|+.+|+++|.+++-++.++
T Consensus 210 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~ 255 (404)
T 3ip1_A 210 GIRPGDNVVILGGGPIGLAAVAILKHAGASKVILSEPSEVRRNLAK 255 (404)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHH
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH
Confidence 45578899999987 4666664554 57778999999988777665
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=80.50 E-value=3.4 Score=27.80 Aligned_cols=38 Identities=24% Similarity=0.406 Sum_probs=27.9
Q ss_pred CcEEEeCCC-cc-HHHHHHHhcCCCeEEEEcCChHHHHHHH
Q 038343 24 KSCFEVGSG-VG-LVGICLAHVKASKVTLTDGDHLTLANMR 62 (191)
Q Consensus 24 ~~VLElG~G-tG-~~~~~la~~g~~~v~~tD~~~~~l~~~~ 62 (191)
.+|+=+|+| .| .++..+...|. .|+++|.+++.++.++
T Consensus 8 ~~viIiG~G~~G~~la~~L~~~g~-~v~vid~~~~~~~~~~ 47 (140)
T 3fwz_A 8 NHALLVGYGRVGSLLGEKLLASDI-PLVVIETSRTRVDELR 47 (140)
T ss_dssp SCEEEECCSHHHHHHHHHHHHTTC-CEEEEESCHHHHHHHH
T ss_pred CCEEEECcCHHHHHHHHHHHHCCC-CEEEEECCHHHHHHHH
Confidence 478889887 44 34445566676 8999999998777665
|
| >1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=80.35 E-value=13 Score=27.91 Aligned_cols=82 Identities=13% Similarity=0.091 Sum_probs=50.3
Q ss_pred CCCCCcEEEeCCCccH---HHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCC
Q 038343 20 IFSNKSCFEVGSGVGL---VGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESA 96 (191)
Q Consensus 20 ~~~~~~VLElG~GtG~---~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~ 96 (191)
.+.+++||=.|++.|+ +...+++.|+ +|+++|.++..++.+.+.++..+ .++.+...|..+.
T Consensus 28 ~l~~k~vlITGasggIG~~la~~L~~~G~-~V~~~~r~~~~~~~~~~~l~~~~--------------~~~~~~~~Dl~~~ 92 (272)
T 1yb1_A 28 SVTGEIVLITGAGHGIGRLTAYEFAKLKS-KLVLWDINKHGLEETAAKCKGLG--------------AKVHTFVVDCSNR 92 (272)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT--------------CCEEEEECCTTCH
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEEcCHHHHHHHHHHHHhcC--------------CeEEEEEeeCCCH
Confidence 4567889988876552 2334555677 89999998877776665554433 2466677776653
Q ss_pred CcCC--C-----CCCCCCEEEEccccc
Q 038343 97 SESG--L-----SAFVPEIILGADILY 116 (191)
Q Consensus 97 ~~~~--~-----~~~~fDvIi~~d~ly 116 (191)
..-. + .-+.+|+||.+--+.
T Consensus 93 ~~v~~~~~~~~~~~g~iD~li~~Ag~~ 119 (272)
T 1yb1_A 93 EDIYSSAKKVKAEIGDVSILVNNAGVV 119 (272)
T ss_dssp HHHHHHHHHHHHHTCCCSEEEECCCCC
T ss_pred HHHHHHHHHHHHHCCCCcEEEECCCcC
Confidence 2100 0 113689998754433
|
| >3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=80.13 E-value=9.2 Score=28.06 Aligned_cols=81 Identities=14% Similarity=0.149 Sum_probs=51.5
Q ss_pred CCCCcEEEeCCCccH---HHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCC
Q 038343 21 FSNKSCFEVGSGVGL---VGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESAS 97 (191)
Q Consensus 21 ~~~~~VLElG~GtG~---~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~ 97 (191)
+.++++|=.|++.|+ +...+++.|+ +|++++.++..++.+...++..+ .++.+...|..+..
T Consensus 3 l~~k~vlITGas~gIG~~~a~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~--------------~~~~~~~~D~~~~~ 67 (247)
T 3lyl_A 3 LNEKVALVTGASRGIGFEVAHALASKGA-TVVGTATSQASAEKFENSMKEKG--------------FKARGLVLNISDIE 67 (247)
T ss_dssp TTTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHTT--------------CCEEEEECCTTCHH
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC--------------CceEEEEecCCCHH
Confidence 356788888876653 3345566787 89999999888877766665543 24666777765432
Q ss_pred cCC-------CCCCCCCEEEEccccc
Q 038343 98 ESG-------LSAFVPEIILGADILY 116 (191)
Q Consensus 98 ~~~-------~~~~~fDvIi~~d~ly 116 (191)
.-. ...++.|+++.+--+.
T Consensus 68 ~~~~~~~~~~~~~~~id~li~~Ag~~ 93 (247)
T 3lyl_A 68 SIQNFFAEIKAENLAIDILVNNAGIT 93 (247)
T ss_dssp HHHHHHHHHHHTTCCCSEEEECCCCC
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCCC
Confidence 100 1224689998755443
|
| >1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A | Back alignment and structure |
|---|
Probab=80.04 E-value=5 Score=31.39 Aligned_cols=43 Identities=19% Similarity=0.119 Sum_probs=31.6
Q ss_pred CCCCCCcEEEeCCC-ccHHHHHHH-hcCCCeEEEEcCChHHHHHHH
Q 038343 19 EIFSNKSCFEVGSG-VGLVGICLA-HVKASKVTLTDGDHLTLANMR 62 (191)
Q Consensus 19 ~~~~~~~VLElG~G-tG~~~~~la-~~g~~~v~~tD~~~~~l~~~~ 62 (191)
...++.+||-.|+| .|...+.++ ..|+ +|+++|.+++-++.++
T Consensus 161 ~~~~g~~VlV~GaG~vG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~ 205 (339)
T 1rjw_A 161 GAKPGEWVAIYGIGGLGHVAVQYAKAMGL-NVVAVDIGDEKLELAK 205 (339)
T ss_dssp TCCTTCEEEEECCSTTHHHHHHHHHHTTC-EEEEECSCHHHHHHHH
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHH
Confidence 34578899999986 565555444 4677 9999999887776664
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 191 | ||||
| d1oria_ | 316 | c.66.1.6 (A:) Protein arginine N-methyltransferase | 4e-04 | |
| d2fyta1 | 311 | c.66.1.6 (A:238-548) Protein arginine N-methyltran | 0.001 | |
| d1g6q1_ | 328 | c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Ba | 0.001 |
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 316 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 37.8 bits (87), Expect = 4e-04
Identities = 11/41 (26%), Positives = 19/41 (46%)
Query: 12 EFILSFPEIFSNKSCFEVGSGVGLVGICLAHVKASKVTLTD 52
+ +F +K +VGSG G++ + A A KV +
Sbjct: 23 NSMFHNRHLFKDKVVLDVGSGTGILCMFAAKAGARKVIGIE 63
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} Length = 311 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.4 bits (83), Expect = 0.001
Identities = 15/41 (36%), Positives = 21/41 (51%)
Query: 12 EFILSFPEIFSNKSCFEVGSGVGLVGICLAHVKASKVTLTD 52
+FI P IF +K +VG G G++ + A A KV D
Sbjct: 25 DFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVD 65
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 328 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 36.4 bits (83), Expect = 0.001
Identities = 11/41 (26%), Positives = 19/41 (46%)
Query: 12 EFILSFPEIFSNKSCFEVGSGVGLVGICLAHVKASKVTLTD 52
I+ ++F +K +VG G G++ + A A V D
Sbjct: 28 NAIIQNKDLFKDKIVLDVGCGTGILSMFAAKHGAKHVIGVD 68
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 191 | |||
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 99.78 | |
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 99.75 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 99.73 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 99.72 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 99.71 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 99.69 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 99.63 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 99.61 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 99.61 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 99.61 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 99.61 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 99.6 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 99.59 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 99.58 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 99.57 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 99.57 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 99.56 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 99.56 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 99.56 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 99.55 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 99.55 | |
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.53 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 99.52 | |
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.51 | |
| d2b3ta1 | 274 | N5-glutamine methyltransferase, HemK {Escherichia | 99.5 | |
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 99.5 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 99.49 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 99.48 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 99.47 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 99.43 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 99.43 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 99.42 | |
| d2fpoa1 | 183 | Methylase YhhF {Escherichia coli [TaxId: 562]} | 99.42 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 99.41 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 99.41 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 99.4 | |
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 99.4 | |
| d2fhpa1 | 182 | Putative methylase EF2452 {Enterococcus faecalis [ | 99.4 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 99.39 | |
| d1ws6a1 | 171 | Methyltransferase TTHA0928 {Thermus thermophilus [ | 99.38 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 99.37 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 99.37 | |
| d2ifta1 | 183 | Putative methylase HI0767 {Haemophilus influenzae | 99.36 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 99.35 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 99.34 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 99.34 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 99.32 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 99.32 | |
| d1uwva2 | 358 | rRNA (Uracil-5-)-methyltransferase RumA, catalytic | 99.3 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 99.3 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 99.28 | |
| d2g72a1 | 263 | Phenylethanolamine N-methyltransferase, PNMTase {H | 99.28 | |
| d2igta1 | 309 | Putative methyltransferase Atu0340 {Agrobacterium | 99.27 | |
| d2h00a1 | 250 | Methyltransferase 10 domain containing protein MET | 99.25 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 99.24 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 99.24 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 99.23 | |
| d1qzza2 | 256 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 99.22 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 99.22 | |
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 99.21 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 99.18 | |
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 99.18 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 99.13 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 99.12 | |
| d1nw3a_ | 328 | Catalytic, N-terminal domain of histone methyltran | 98.99 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 98.93 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 98.9 | |
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 98.8 | |
| d2cl5a1 | 214 | Catechol O-methyltransferase, COMT {Rat (Rattus no | 98.8 | |
| d1susa1 | 227 | Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag | 98.63 | |
| d1jsxa_ | 207 | Glucose-inhibited division protein B (GidB) {Esche | 98.62 | |
| d1qama_ | 235 | rRNA adenine dimethylase {Bacillus subtilis, Ermc' | 98.45 | |
| d1fp1d2 | 244 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 98.42 | |
| d1fp2a2 | 244 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 98.42 | |
| d2f8la1 | 328 | Hypothetical protein Lmo1582 {Listeria monocytogen | 98.41 | |
| d2dula1 | 375 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 98.34 | |
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 98.31 | |
| d1zq9a1 | 278 | Probable dimethyladenosine transferase {Human (Hom | 98.3 | |
| d1iy9a_ | 274 | Spermidine synthase {Bacillus subtilis [TaxId: 142 | 98.3 | |
| d1xdza_ | 239 | Glucose-inhibited division protein B (GidB) {Bacil | 98.28 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 98.25 | |
| d1af7a2 | 193 | Chemotaxis receptor methyltransferase CheR, C-term | 98.24 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 98.23 | |
| d1kyza2 | 243 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 98.15 | |
| d1yuba_ | 245 | rRNA adenine dimethylase {Streptococcus pneumoniae | 98.14 | |
| d1inla_ | 295 | Spermidine synthase {Thermotoga maritima [TaxId: 2 | 98.12 | |
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 98.07 | |
| d1xj5a_ | 290 | Spermidine synthase {Thale cress (Arabidopsis thal | 98.06 | |
| d1qyra_ | 252 | High level kasugamycin resistance protein KsgA {Es | 97.99 | |
| d2b2ca1 | 312 | Spermidine synthase {Caenorhabditis elegans [TaxId | 97.95 | |
| d1sqga2 | 284 | Ribosomal RNA small subunit methyltransferase B, R | 97.73 | |
| d2oyra1 | 250 | Hypothetical protein YhiQ {Shigella flexneri [TaxI | 97.68 | |
| d2ih2a1 | 223 | DNA methylase TaqI, N-terminal domain {Thermus aqu | 97.66 | |
| d1ixka_ | 313 | Hypothetical methyltransferase PH1374 {Archaeon Py | 97.58 | |
| d2okca1 | 425 | Type I restriction enzyme StySJI M protein {Bacter | 97.52 | |
| d2p41a1 | 257 | An RNA cap (nucleoside-2'-O-)-methyltransferase do | 97.51 | |
| d2b9ea1 | 293 | NOL1R {Human (Homo sapiens) [TaxId: 9606]} | 97.35 | |
| d1ej0a_ | 180 | RNA methyltransferase FtsJ {Escherichia coli [TaxI | 97.31 | |
| d2ar0a1 | 524 | M.EcoKI {Escherichia coli [TaxId: 562]} | 96.87 | |
| d1i4wa_ | 322 | Transcription factor sc-mtTFB {Baker's yeast (Sacc | 96.68 | |
| d2bm8a1 | 232 | Cephalosporin hydroxylase CmcI {Streptomyces clavu | 96.41 | |
| d1dcta_ | 324 | DNA methylase HaeIII {Haemophilus aegyptius [TaxId | 96.32 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 96.29 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 96.02 | |
| d1booa_ | 320 | m.PvuII N4 cytosine-specific DNA methyltransferase | 95.8 | |
| d2c7pa1 | 327 | DNA methylase HhaI {Haemophilus haemolyticus [TaxI | 95.79 | |
| d1wg8a2 | 182 | TM0872, methyltransferase domain {Thermus thermoph | 95.65 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 95.17 | |
| d1luaa1 | 191 | Methylene-tetrahydromethanopterin dehydrogenase {M | 95.06 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 95.04 | |
| d1g55a_ | 343 | DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | 95.03 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 94.97 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 94.97 | |
| d1ae1a_ | 258 | Tropinone reductase {Jimsonweed (Datura stramonium | 94.77 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 94.75 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 94.54 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 94.09 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 94.07 | |
| d1fmca_ | 255 | 7-alpha-hydroxysteroid dehydrogenase {Escherichia | 93.91 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 93.86 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 93.85 | |
| d1vi2a1 | 182 | Putative shikimate dehydrogenase YdiB {Escherichia | 93.74 | |
| d1zema1 | 260 | Xylitol dehydrogenase {Gluconobacter oxydans [TaxI | 93.74 | |
| d2gdza1 | 254 | 15-hydroxyprostaglandin dehydrogenase, PGDH {Human | 93.51 | |
| d2c07a1 | 251 | beta-keto acyl carrier protein reductase {Malaria | 93.31 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 93.22 | |
| d1iy8a_ | 258 | Levodione reductase {Corynebacterium aquaticum [Ta | 93.13 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 93.01 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 92.9 | |
| d1nyta1 | 170 | Shikimate 5-dehydrogenase AroE {Escherichia coli [ | 92.68 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 92.66 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 92.49 | |
| d1xhla_ | 274 | Hypothetical protein F25D1.5 {Caenorhabditis elega | 92.43 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 92.03 | |
| d1xkqa_ | 272 | Hypothetical protein R05D8.7 {Caenorhabditis elega | 91.97 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 91.88 | |
| d1yxma1 | 297 | Peroxisomal trans 2-enoyl CoA reductase {Human (Ho | 91.75 | |
| d2py6a1 | 395 | Methyltransferase FkbM {Methylobacillus flagellatu | 91.71 | |
| d2ae2a_ | 259 | Tropinone reductase {Jimsonweed (Datura stramonium | 91.69 | |
| d1npya1 | 167 | Shikimate 5-dehydrogenase-like protein HI0607 {Hae | 91.6 | |
| d1o9ga_ | 249 | rRNA methyltransferase AviRa {Streptomyces viridoc | 91.58 | |
| d1spxa_ | 264 | Glucose dehydrogenase (5l265) {Nematode (Caenorhab | 91.46 | |
| d1p77a1 | 171 | Shikimate 5-dehydrogenase AroE {Haemophilus influe | 91.41 | |
| d2bgka1 | 268 | Rhizome secoisolariciresinol dehydrogenase {Mayapp | 91.31 | |
| d1zkda1 | 365 | Hypothetical protein RPA4359 {Rhodopseudomonas pal | 91.17 | |
| d1xq1a_ | 259 | Tropinone reductase {Thale cress (Arabidopsis thal | 90.9 | |
| d1f0ya2 | 192 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 90.54 | |
| d1xu9a_ | 269 | 11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom | 90.23 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 89.91 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 89.43 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 89.31 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 89.24 | |
| d1zk4a1 | 251 | R-specific alcohol dehydrogenase {Lactobacillus br | 88.95 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 88.88 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 88.67 | |
| d1vl8a_ | 251 | Gluconate 5-dehydrogenase {Thermotoga maritima [Ta | 88.56 | |
| d1w6ua_ | 294 | 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H | 88.39 | |
| d2rhca1 | 257 | beta-keto acyl carrier protein reductase {Streptom | 87.75 | |
| d2jfga1 | 93 | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | 87.75 | |
| d1gpja2 | 159 | Glutamyl tRNA-reductase middle domain {Archaeon Me | 87.47 | |
| d1e5qa1 | 182 | Saccharopine reductase {Rice blast fungus (Magnapo | 87.45 | |
| d1g0oa_ | 272 | 1,3,8-trihydroxynaphtalene reductase (THNR, naphto | 86.31 | |
| d1gega_ | 255 | meso-2,3-butanediol dehydrogenase {Klebsiella pneu | 86.04 | |
| d1mv8a2 | 202 | GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos | 85.88 | |
| d1wdka3 | 186 | Fatty oxidation complex alpha subunit, middle doma | 85.56 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 85.34 | |
| d1h5qa_ | 260 | Mannitol dehydrogenase {Mushroom (Agaricus bisporu | 85.18 | |
| d1zesa1 | 121 | PhoB receiver domain {Escherichia coli [TaxId: 562 | 85.05 | |
| d1ydea1 | 250 | Retinal dehydrogenase/reductase 3 {Human (Homo sap | 84.78 | |
| d1hxha_ | 253 | 3beta/17beta hydroxysteroid dehydrogenase {Comamon | 84.52 | |
| d1geea_ | 261 | Glucose dehydrogenase {Bacillus megaterium [TaxId: | 84.31 | |
| d1x1ta1 | 260 | D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas | 84.14 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 84.08 | |
| d1q7ba_ | 243 | beta-keto acyl carrier protein reductase {Escheric | 83.64 | |
| d1nffa_ | 244 | Putative oxidoreductase Rv2002 {Mycobacterium tube | 83.12 | |
| d1j6ua1 | 89 | UDP-N-acetylmuramate-alanine ligase MurC {Thermoto | 82.66 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 82.04 | |
| d1pr9a_ | 244 | Carbonyl reductase {Human (Homo sapiens) [TaxId: 9 | 82.03 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 81.36 | |
| d1cyda_ | 242 | Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1 | 81.2 | |
| d2uyoa1 | 297 | Putative methyltransferase ML2640 {Mycobacterium l | 81.2 | |
| d2ew8a1 | 247 | (s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb | 81.06 | |
| d1bdba_ | 276 | Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps | 80.96 | |
| d1jw9b_ | 247 | Molybdenum cofactor biosynthesis protein MoeB {Esc | 80.57 | |
| d1hdca_ | 254 | 3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre | 80.48 | |
| d1k2wa_ | 256 | Sorbitol dehydrogenase {Rhodobacter sphaeroides [T | 80.22 | |
| d1ulsa_ | 242 | beta-keto acyl carrier protein reductase {Thermus | 80.15 |
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=99.78 E-value=1.3e-18 Score=131.70 Aligned_cols=113 Identities=14% Similarity=0.072 Sum_probs=95.9
Q ss_pred HHHHHhhCCCCCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEE
Q 038343 10 LSEFILSFPEIFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCV 89 (191)
Q Consensus 10 L~~~l~~~~~~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~ 89 (191)
..+++.+..+..++.+|||||||+|..+..+++.+. +|+++|+|+.+++.+++++..++.. ++.+.
T Consensus 4 ~~~~l~~~~~~~~~~rILDiGcGtG~~~~~la~~~~-~v~gvD~S~~~l~~A~~~~~~~~~~-------------~~~~~ 69 (234)
T d1xxla_ 4 SLGLMIKTAECRAEHRVLDIGAGAGHTALAFSPYVQ-ECIGVDATKEMVEVASSFAQEKGVE-------------NVRFQ 69 (234)
T ss_dssp HHHHHHHHHTCCTTCEEEEESCTTSHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHHTCC-------------SEEEE
T ss_pred HHHHHHHHhCCCCCCEEEEeCCcCcHHHHHHHHhCC-eEEEEeCChhhhhhhhhhhcccccc-------------ccccc
Confidence 345565556666889999999999999999999876 8999999999999999999888754 47777
Q ss_pred eecCCCCCcCCCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCc
Q 038343 90 HLPWESASESGLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVS 139 (191)
Q Consensus 90 ~ldw~~~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~ 139 (191)
..|..+. .+++++||+|++..++++.++...+++.+.++|+|+|...
T Consensus 70 ~~d~~~~---~~~~~~fD~v~~~~~l~~~~d~~~~l~~~~r~LkpgG~~~ 116 (234)
T d1xxla_ 70 QGTAESL---PFPDDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFL 116 (234)
T ss_dssp ECBTTBC---CSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEE
T ss_pred ccccccc---cccccccceeeeeceeecccCHHHHHHHHHHeeCCCcEEE
Confidence 8777653 2466899999999999999999999999999999998544
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=99.75 E-value=5e-18 Score=127.78 Aligned_cols=105 Identities=18% Similarity=0.067 Sum_probs=90.1
Q ss_pred CCCCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCC
Q 038343 18 PEIFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESAS 97 (191)
Q Consensus 18 ~~~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~ 97 (191)
....++.+|||||||+|..+..+++.++ +|+++|+++.+++.+++++..++.. ++.+...++.+.+
T Consensus 11 ~~l~~~~rVLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~i~~A~~~~~~~~~~-------------~i~~~~~d~~~l~ 76 (231)
T d1vl5a_ 11 AALKGNEEVLDVATGGGHVANAFAPFVK-KVVAFDLTEDILKVARAFIEGNGHQ-------------QVEYVQGDAEQMP 76 (231)
T ss_dssp HTCCSCCEEEEETCTTCHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHTTCC-------------SEEEEECCC-CCC
T ss_pred cCCCCcCEEEEecccCcHHHHHHHHhCC-EEEEEECCHHHHhhhhhcccccccc-------------ccccccccccccc
Confidence 3345678999999999999999999986 8999999999999999998887643 5788888877643
Q ss_pred cCCCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCc
Q 038343 98 ESGLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVS 139 (191)
Q Consensus 98 ~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~ 139 (191)
+++++||+|++..++++.++...+++.+.++|+|||...
T Consensus 77 ---~~~~~fD~v~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~ 115 (231)
T d1vl5a_ 77 ---FTDERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLL 115 (231)
T ss_dssp ---SCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEE
T ss_pred ---ccccccccccccccccccCCHHHHHHHHHHhcCCCcEEE
Confidence 456799999999999999999999999999999998544
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=99.73 E-value=5.8e-18 Score=128.98 Aligned_cols=120 Identities=15% Similarity=0.014 Sum_probs=100.9
Q ss_pred ccccHHHHHHHHhhCCCCCCCCcEEEeCCCccHHHHHHHhc-CCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccC
Q 038343 3 IWPSSLLLSEFILSFPEIFSNKSCFEVGSGVGLVGICLAHV-KASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYE 81 (191)
Q Consensus 3 ~W~~a~~L~~~l~~~~~~~~~~~VLElG~GtG~~~~~la~~-g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~ 81 (191)
.+|.+......+.......++.+|||+|||+|..+..+++. |+ +|+++|+|+.+++.++++...+++.
T Consensus 14 ~~p~~~~~~~~l~~~~~l~pg~~VLDiGCG~G~~~~~la~~~~~-~v~GvD~s~~~~~~ar~~~~~~gl~---------- 82 (245)
T d1nkva_ 14 HNPFTEEKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGI-TGTGIDMSSLFTAQAKRRAEELGVS---------- 82 (245)
T ss_dssp SSSCCHHHHHHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHTCC-EEEEEESCHHHHHHHHHHHHHTTCT----------
T ss_pred cCCCCHHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHhcCC-EEEEEecccchhhHHHHHHHHhhcc----------
Confidence 35555566666777677778999999999999888877764 55 9999999999999999999988865
Q ss_pred CCCeeEEEeecCCCCCcCCCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCc
Q 038343 82 DPNVVQCVHLPWESASESGLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVS 139 (191)
Q Consensus 82 ~~~~i~~~~ldw~~~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~ 139 (191)
+++.+...|+.+.. .+++||+|++..++++..+.+.+++.++++|||||...
T Consensus 83 --~~v~~~~~d~~~~~----~~~~fD~v~~~~~~~~~~d~~~~l~~~~r~LkPGG~l~ 134 (245)
T d1nkva_ 83 --ERVHFIHNDAAGYV----ANEKCDVAACVGATWIAGGFAGAEELLAQSLKPGGIML 134 (245)
T ss_dssp --TTEEEEESCCTTCC----CSSCEEEEEEESCGGGTSSSHHHHHHHTTSEEEEEEEE
T ss_pred --ccchhhhhHHhhcc----ccCceeEEEEEehhhccCCHHHHHHHHHHHcCcCcEEE
Confidence 56888888887642 45689999999999999999999999999999998654
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.72 E-value=4e-17 Score=120.23 Aligned_cols=113 Identities=18% Similarity=0.241 Sum_probs=89.9
Q ss_pred ccHHHHHHHHhhCCCCCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCC
Q 038343 5 PSSLLLSEFILSFPEIFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPN 84 (191)
Q Consensus 5 ~~a~~L~~~l~~~~~~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~ 84 (191)
.++..|.+.+ ...++.+|||+|||+|.+++.+++.+. +|+++|+++.+++.+++|++.|++.. .
T Consensus 39 ~~t~lLi~~l----~~~~~~~VLDiGcG~G~~~~~la~~~~-~v~~iD~s~~~i~~a~~n~~~~~l~~-----------~ 102 (194)
T d1dusa_ 39 KGTKILVENV----VVDKDDDILDLGCGYGVIGIALADEVK-STTMADINRRAIKLAKENIKLNNLDN-----------Y 102 (194)
T ss_dssp HHHHHHHHHC----CCCTTCEEEEETCTTSHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHTTCTT-----------S
T ss_pred HHHHHHHHhC----CcCCCCeEEEEeecCChhHHHHHhhcc-ccceeeeccccchhHHHHHHHhCCcc-----------c
Confidence 3455555543 334678999999999999999998765 89999999999999999999998753 3
Q ss_pred eeEEEeecCCCCCcCCCCCCCCCEEEEcccccCCCC-hHHHHHHHHHHhccCCC
Q 038343 85 VVQCVHLPWESASESGLSAFVPEIILGADILYDRSC-FPDLVRILAILLNRRKS 137 (191)
Q Consensus 85 ~i~~~~ldw~~~~~~~~~~~~fDvIi~~d~ly~~~~-~~~ll~~l~~ll~~~g~ 137 (191)
++.+...|+.+. ..+.+||+|++..++|.... .+.+++.+.++|+|+|.
T Consensus 103 ~i~~~~~d~~~~----~~~~~fD~Ii~~~p~~~~~~~~~~~l~~~~~~LkpgG~ 152 (194)
T d1dusa_ 103 DIRVVHSDLYEN----VKDRKYNKIITNPPIRAGKEVLHRIIEEGKELLKDNGE 152 (194)
T ss_dssp CEEEEECSTTTT----CTTSCEEEEEECCCSTTCHHHHHHHHHHHHHHEEEEEE
T ss_pred eEEEEEcchhhh----hccCCceEEEEcccEEecchhhhhHHHHHHHhcCcCcE
Confidence 477777776543 24568999999888876554 57889999999999974
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=99.71 E-value=3.4e-17 Score=127.13 Aligned_cols=114 Identities=10% Similarity=0.034 Sum_probs=95.8
Q ss_pred HHHHHhhCCCCCCCCcEEEeCCCccHHHHHHHhc-CCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEE
Q 038343 10 LSEFILSFPEIFSNKSCFEVGSGVGLVGICLAHV-KASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQC 88 (191)
Q Consensus 10 L~~~l~~~~~~~~~~~VLElG~GtG~~~~~la~~-g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~ 88 (191)
+.+.+.......++.+|||+|||+|..+..+++. |+ +|+++|+++.+++.++++....++. .++.+
T Consensus 55 ~~~~l~~~~~l~~~~~vLDiGcG~G~~~~~la~~~~~-~v~gvD~s~~~i~~a~~~~~~~gl~------------~~v~~ 121 (282)
T d2o57a1 55 LASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKFGV-SIDCLNIAPVQNKRNEEYNNQAGLA------------DNITV 121 (282)
T ss_dssp HHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHHHTCT------------TTEEE
T ss_pred HHHHHHHhcCCCCCCEEEEeCCCCcHHHhhhhccCCc-EEEEEeccchhhhhhhccccccccc------------ccccc
Confidence 4444555556668899999999999999988765 55 8999999999999999998888765 46888
Q ss_pred EeecCCCCCcCCCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCc
Q 038343 89 VHLPWESASESGLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVS 139 (191)
Q Consensus 89 ~~ldw~~~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~ 139 (191)
...++.+.+ +++++||+|++.+++++.++...+++.+.++|+|||...
T Consensus 122 ~~~d~~~l~---~~~~sfD~V~~~~~l~h~~d~~~~l~~~~~~LkpgG~l~ 169 (282)
T d2o57a1 122 KYGSFLEIP---CEDNSYDFIWSQDAFLHSPDKLKVFQECARVLKPRGVMA 169 (282)
T ss_dssp EECCTTSCS---SCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEE
T ss_pred ccccccccc---ccccccchhhccchhhhccCHHHHHHHHHHhcCCCcEEE
Confidence 888887653 456789999999999999999999999999999998643
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.69 E-value=1.2e-16 Score=119.39 Aligned_cols=101 Identities=10% Similarity=0.045 Sum_probs=82.6
Q ss_pred CCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCCC
Q 038343 22 SNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESGL 101 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~~ 101 (191)
++.+|||||||+|..+..+++.+. +|+++|+|+.+++.++++....+. .+.....|..+. .+
T Consensus 37 ~~~~ILDiGcG~G~~~~~la~~~~-~v~giD~S~~~i~~ak~~~~~~~~--------------~~~~~~~d~~~l---~~ 98 (226)
T d1ve3a1 37 KRGKVLDLACGVGGFSFLLEDYGF-EVVGVDISEDMIRKAREYAKSRES--------------NVEFIVGDARKL---SF 98 (226)
T ss_dssp SCCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC--------------CCEEEECCTTSC---CS
T ss_pred CCCEEEEECCCcchhhhhHhhhhc-ccccccccccchhhhhhhhccccc--------------cccccccccccc---cc
Confidence 567999999999999999999976 899999999999999988776553 244555555543 24
Q ss_pred CCCCCCEEEEcccccCCC--ChHHHHHHHHHHhccCCCCcc
Q 038343 102 SAFVPEIILGADILYDRS--CFPDLVRILAILLNRRKSVSS 140 (191)
Q Consensus 102 ~~~~fDvIi~~d~ly~~~--~~~~ll~~l~~ll~~~g~~~~ 140 (191)
++++||+|++.+++++.+ +...+++.+.++|+|||....
T Consensus 99 ~~~~fD~I~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~lii 139 (226)
T d1ve3a1 99 EDKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIM 139 (226)
T ss_dssp CTTCEEEEEEESCGGGCCHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred cCcCceEEEEecchhhCChhHHHHHHHHHHHHcCcCcEEEE
Confidence 557899999999999865 677899999999999987543
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=99.63 E-value=1e-16 Score=122.64 Aligned_cols=109 Identities=15% Similarity=0.132 Sum_probs=84.2
Q ss_pred ccHHHHHHHHhhCCCCCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCC
Q 038343 5 PSSLLLSEFILSFPEIFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPN 84 (191)
Q Consensus 5 ~~a~~L~~~l~~~~~~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~ 84 (191)
|.+..+.+++.... .++++|||+|||+|.+++.+++.|+ +|+++|+++.+++.+++|++.|+..
T Consensus 105 ~TT~l~l~~l~~~~--~~g~~VLDiGcGsG~l~i~aa~~g~-~V~gvDis~~av~~A~~na~~n~~~------------- 168 (254)
T d2nxca1 105 ETTRLALKALARHL--RPGDKVLDLGTGSGVLAIAAEKLGG-KALGVDIDPMVLPQAEANAKRNGVR------------- 168 (254)
T ss_dssp HHHHHHHHHHHHHC--CTTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCGGGHHHHHHHHHHTTCC-------------
T ss_pred chhhHHHHHHHhhc--CccCEEEEcccchhHHHHHHHhcCC-EEEEEECChHHHHHHHHHHHHcCCc-------------
Confidence 34555666665543 4788999999999999999999987 8999999999999999999999864
Q ss_pred eeEEEeecCCCCCcCCCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCC
Q 038343 85 VVQCVHLPWESASESGLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKS 137 (191)
Q Consensus 85 ~i~~~~ldw~~~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~ 137 (191)
..+...++.+. .+.++||+|+++-. ......+++.+.++|||||.
T Consensus 169 -~~~~~~d~~~~----~~~~~fD~V~ani~---~~~l~~l~~~~~~~LkpGG~ 213 (254)
T d2nxca1 169 -PRFLEGSLEAA----LPFGPFDLLVANLY---AELHAALAPRYREALVPGGR 213 (254)
T ss_dssp -CEEEESCHHHH----GGGCCEEEEEEECC---HHHHHHHHHHHHHHEEEEEE
T ss_pred -eeEEecccccc----ccccccchhhhccc---cccHHHHHHHHHHhcCCCcE
Confidence 34455544322 23468999998622 23467889999999999974
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.61 E-value=9.7e-16 Score=116.39 Aligned_cols=100 Identities=12% Similarity=0.021 Sum_probs=81.1
Q ss_pred CCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCC
Q 038343 21 FSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESG 100 (191)
Q Consensus 21 ~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~ 100 (191)
.+.++|||+|||+|..++.+++.|+ +|+++|.|+.|++.+++++..++. ++.+...|+.+..
T Consensus 40 ~~~~~iLDiGcGtG~~~~~l~~~~~-~v~gvD~s~~mi~~a~~~~~~~~~--------------~i~~~~~d~~~l~--- 101 (251)
T d1wzna1 40 REVRRVLDLACGTGIPTLELAERGY-EVVGLDLHEEMLRVARRKAKERNL--------------KIEFLQGDVLEIA--- 101 (251)
T ss_dssp SCCCEEEEETCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC--------------CCEEEESCGGGCC---
T ss_pred CCCCEEEEeCCCCCccchhhcccce-EEEEEeeccccccccccccccccc--------------cchheehhhhhcc---
Confidence 3567899999999999999999987 899999999999999999887663 3667777776543
Q ss_pred CCCCCCCEEEEc-ccccCC--CChHHHHHHHHHHhccCCCCc
Q 038343 101 LSAFVPEIILGA-DILYDR--SCFPDLVRILAILLNRRKSVS 139 (191)
Q Consensus 101 ~~~~~fDvIi~~-d~ly~~--~~~~~ll~~l~~ll~~~g~~~ 139 (191)
+ +++||+|++. .++++. ++...+++.+.++|+|||...
T Consensus 102 ~-~~~fD~I~~~~~~~~~~~~~~~~~~L~~~~~~LkpgG~li 142 (251)
T d1wzna1 102 F-KNEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFI 142 (251)
T ss_dssp C-CSCEEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEE
T ss_pred c-ccccchHhhhhhhhhcCChHHHHHHHHHHHHHcCCCcEEE
Confidence 2 2579999986 566654 346688999999999998654
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.61 E-value=2.7e-15 Score=110.42 Aligned_cols=104 Identities=15% Similarity=0.103 Sum_probs=84.5
Q ss_pred CCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCC
Q 038343 21 FSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESG 100 (191)
Q Consensus 21 ~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~ 100 (191)
.++.+|||||||+|..++.+++.|. +|+++|+++.+++.++++.+..+.. .+.+...|+....
T Consensus 29 ~~~grvLDiGcG~G~~~~~la~~g~-~v~gvD~s~~~l~~a~~~~~~~~~~-------------~~~~~~~d~~~~~--- 91 (198)
T d2i6ga1 29 VAPGRTLDLGCGNGRNSLYLAANGY-DVTAWDKNPASMANLERIKAAEGLD-------------NLQTDLVDLNTLT--- 91 (198)
T ss_dssp SCSCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCT-------------TEEEEECCTTTCC---
T ss_pred CCCCcEEEECCCCCHHHHHHHHHhh-hhccccCcHHHHHHHHHHhhhcccc-------------chhhhheeccccc---
Confidence 3456999999999999999999987 8999999999999999988876653 4666666665443
Q ss_pred CCCCCCCEEEEcccccCCC--ChHHHHHHHHHHhccCCCCcccc
Q 038343 101 LSAFVPEIILGADILYDRS--CFPDLVRILAILLNRRKSVSSSR 142 (191)
Q Consensus 101 ~~~~~fDvIi~~d~ly~~~--~~~~ll~~l~~ll~~~g~~~~~~ 142 (191)
.+++||+|++..++++.+ ....+++.+.++|+|+|......
T Consensus 92 -~~~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 134 (198)
T d2i6ga1 92 -FDGEYDFILSTVVMMFLEAQTIPGLIANMQRCTKPGGYNLIVA 134 (198)
T ss_dssp -CCCCEEEEEEESCGGGSCTTHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred -ccccccEEEEeeeeecCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 246899999999999754 45689999999999998655443
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.61 E-value=5.4e-16 Score=116.23 Aligned_cols=105 Identities=11% Similarity=0.033 Sum_probs=83.0
Q ss_pred CCCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCc
Q 038343 19 EIFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASE 98 (191)
Q Consensus 19 ~~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~ 98 (191)
...++.+|||||||+|..+..+++.+..+|+++|+++.+++.+++++...+.. ++.+...|..+..
T Consensus 57 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~ak~~~~~~~~~-------------~~~f~~~d~~~~~- 122 (222)
T d2ex4a1 57 NKTGTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKR-------------VRNYFCCGLQDFT- 122 (222)
T ss_dssp -CCCCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGGG-------------EEEEEECCGGGCC-
T ss_pred CCCCCCEEEEeccCCCHhhHHHHHhcCCEEEEeecCHHHhhcccccccccccc-------------ccccccccccccc-
Confidence 33456789999999999888766555669999999999999999887765532 4667777765542
Q ss_pred CCCCCCCCCEEEEcccccCCCCh--HHHHHHHHHHhccCCCCc
Q 038343 99 SGLSAFVPEIILGADILYDRSCF--PDLVRILAILLNRRKSVS 139 (191)
Q Consensus 99 ~~~~~~~fDvIi~~d~ly~~~~~--~~ll~~l~~ll~~~g~~~ 139 (191)
++.++||+|++.+++++.++. ..+++.++++|+|+|...
T Consensus 123 --~~~~~fD~I~~~~~l~h~~~~~~~~~l~~i~~~Lk~~G~~~ 163 (222)
T d2ex4a1 123 --PEPDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIV 163 (222)
T ss_dssp --CCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEE
T ss_pred --cccccccccccccccccchhhhhhhHHHHHHHhcCCcceEE
Confidence 345789999999999987654 479999999999998544
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=99.61 E-value=7.3e-16 Score=116.40 Aligned_cols=94 Identities=18% Similarity=0.122 Sum_probs=75.6
Q ss_pred CCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCCC
Q 038343 22 SNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESGL 101 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~~ 101 (191)
++.+|||+|||+|..+..+++.|. +|+++|+++.+++.++++...+ +...+..+. .+
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~giD~s~~~l~~a~~~~~~~-------------------~~~~~~~~l---~~ 98 (246)
T d2avna1 42 NPCRVLDLGGGTGKWSLFLQERGF-EVVLVDPSKEMLEVAREKGVKN-------------------VVEAKAEDL---PF 98 (246)
T ss_dssp SCCEEEEETCTTCHHHHHHHTTTC-EEEEEESCHHHHHHHHHHTCSC-------------------EEECCTTSC---CS
T ss_pred CCCEEEEECCCCchhcccccccce-EEEEeecccccccccccccccc-------------------ccccccccc---cc
Confidence 567999999999999999999987 8999999999999988652111 223343332 24
Q ss_pred CCCCCCEEEE-cccccCCCChHHHHHHHHHHhccCCCC
Q 038343 102 SAFVPEIILG-ADILYDRSCFPDLVRILAILLNRRKSV 138 (191)
Q Consensus 102 ~~~~fDvIi~-~d~ly~~~~~~~ll~~l~~ll~~~g~~ 138 (191)
++++||+|++ .+++++.++.+.+++.+.++|+|||..
T Consensus 99 ~~~~fD~ii~~~~~~~~~~d~~~~l~~i~r~Lk~gG~~ 136 (246)
T d2avna1 99 PSGAFEAVLALGDVLSYVENKDKAFSEIRRVLVPDGLL 136 (246)
T ss_dssp CTTCEEEEEECSSHHHHCSCHHHHHHHHHHHEEEEEEE
T ss_pred ccccccceeeecchhhhhhhHHHHHHHHHhhcCcCcEE
Confidence 5678999998 578999999999999999999999743
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.60 E-value=1.7e-15 Score=119.39 Aligned_cols=110 Identities=20% Similarity=0.250 Sum_probs=87.7
Q ss_pred HHhhCCCCCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeec
Q 038343 13 FILSFPEIFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLP 92 (191)
Q Consensus 13 ~l~~~~~~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ld 92 (191)
.|.++...+++++|||||||+|.+++++++.|+++|+++|.++. ...++++++.|+.. .++.+...+
T Consensus 24 ai~~~~~~~~~~~VLDiGcG~G~ls~~aa~~Ga~~V~avd~s~~-~~~a~~~~~~n~~~------------~~v~~~~~~ 90 (316)
T d1oria_ 24 SMFHNRHLFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSI-SDYAVKIVKANKLD------------HVVTIIKGK 90 (316)
T ss_dssp HHHTCHHHHTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTT-HHHHHHHHHHTTCT------------TTEEEEESC
T ss_pred HHHhccccCCcCEEEEEecCCcHHHHHHHHhCCCEEEEEcCcHH-HhhhhhHHHHhCCc------------cccceEecc
Confidence 34455556789999999999999999999999989999999875 56777888888865 567888777
Q ss_pred CCCCCcCCCCCCCCCEEEEccc---ccCCCChHHHHHHHHHHhccCCCC
Q 038343 93 WESASESGLSAFVPEIILGADI---LYDRSCFPDLVRILAILLNRRKSV 138 (191)
Q Consensus 93 w~~~~~~~~~~~~fDvIi~~d~---ly~~~~~~~ll~~l~~ll~~~g~~ 138 (191)
..+.. .+..+||+|++.-+ +++...++.++..++++|+|+|..
T Consensus 91 ~~~~~---~~~~~~D~ivs~~~~~~l~~e~~~~~~l~~~~r~Lkp~G~i 136 (316)
T d1oria_ 91 VEEVE---LPVEKVDIIISEWMGYCLFYESMLNTVLHARDKWLAPDGLI 136 (316)
T ss_dssp TTTCC---CSSSCEEEEEECCCBBTBTBTCCHHHHHHHHHHHEEEEEEE
T ss_pred HHHcc---cccceeEEEeeeeeeeeeccHHHHHHHHHHHHhcCCCCeEE
Confidence 66543 34468999987544 345678999999999999999754
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.59 E-value=4.4e-15 Score=117.55 Aligned_cols=109 Identities=19% Similarity=0.225 Sum_probs=87.5
Q ss_pred HhhCCCCCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecC
Q 038343 14 ILSFPEIFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPW 93 (191)
Q Consensus 14 l~~~~~~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw 93 (191)
|.++...+++++|||||||+|.+++.+++.|+++|+++|.++ ++..++++++.|+.. .++.+...+.
T Consensus 30 I~~~~~~~~~~~VLDlGcGtG~ls~~aa~~Ga~~V~avd~s~-~~~~a~~~~~~~~~~------------~~i~~i~~~~ 96 (328)
T d1g6q1_ 30 IIQNKDLFKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSS-IIEMAKELVELNGFS------------DKITLLRGKL 96 (328)
T ss_dssp HHHHHHHHTTCEEEEETCTTSHHHHHHHHTCCSEEEEEESST-HHHHHHHHHHHTTCT------------TTEEEEESCT
T ss_pred HHhccccCCcCEEEEeCCCCCHHHHHHHHhCCCEEEEEeCCH-HHHHHHHHHHHhCcc------------ccceEEEeeh
Confidence 333444568899999999999999999999999999999985 678888888888865 5677777776
Q ss_pred CCCCcCCCCCCCCCEEEEcccc---cCCCChHHHHHHHHHHhccCCCC
Q 038343 94 ESASESGLSAFVPEIILGADIL---YDRSCFPDLVRILAILLNRRKSV 138 (191)
Q Consensus 94 ~~~~~~~~~~~~fDvIi~~d~l---y~~~~~~~ll~~l~~ll~~~g~~ 138 (191)
.+.. +++.+||+|++..+. .+....+.++..++++|||+|..
T Consensus 97 ~~l~---~~~~~~D~i~se~~~~~~~~e~~~~~~~~a~~r~LkpgG~i 141 (328)
T d1g6q1_ 97 EDVH---LPFPKVDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLI 141 (328)
T ss_dssp TTSC---CSSSCEEEEEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEE
T ss_pred hhcc---CcccceeEEEEEecceeeccchhHHHHHHHHHhccCCCeEE
Confidence 5442 345689999985544 46678899999999999999754
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=99.58 E-value=6.1e-15 Score=114.31 Aligned_cols=111 Identities=16% Similarity=0.155 Sum_probs=87.8
Q ss_pred HHHHhhC-CCCCCCCcEEEeCCCccHHHHHHHhcC--CCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeE
Q 038343 11 SEFILSF-PEIFSNKSCFEVGSGVGLVGICLAHVK--ASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQ 87 (191)
Q Consensus 11 ~~~l~~~-~~~~~~~~VLElG~GtG~~~~~la~~g--~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~ 87 (191)
.+|+... ....++.+|||+|||+|..+..+++.. ..+|+++|+++.+++.++++....+. ++.
T Consensus 15 l~~l~~~~~~~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~--------------~~~ 80 (281)
T d2gh1a1 15 VSFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPY--------------DSE 80 (281)
T ss_dssp HHHHHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSS--------------EEE
T ss_pred HHHHHHHHhccCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhcccccccc--------------ccc
Confidence 3455443 334467799999999999999888752 23899999999999999998876652 466
Q ss_pred EEeecCCCCCcCCCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCc
Q 038343 88 CVHLPWESASESGLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVS 139 (191)
Q Consensus 88 ~~~ldw~~~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~ 139 (191)
+...|..+.. + .++||+|++..++++.++...+++.+.+.|||||...
T Consensus 81 f~~~d~~~~~---~-~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~li 128 (281)
T d2gh1a1 81 FLEGDATEIE---L-NDKYDIAICHAFLLHMTTPETMLQKMIHSVKKGGKII 128 (281)
T ss_dssp EEESCTTTCC---C-SSCEEEEEEESCGGGCSSHHHHHHHHHHTEEEEEEEE
T ss_pred cccccccccc---c-cCCceEEEEehhhhcCCCHHHHHHHHHHHcCcCcEEE
Confidence 7777765542 2 2479999999999999999999999999999998543
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=99.57 E-value=1.2e-15 Score=114.65 Aligned_cols=98 Identities=15% Similarity=0.131 Sum_probs=80.1
Q ss_pred CCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcC
Q 038343 20 IFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASES 99 (191)
Q Consensus 20 ~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~ 99 (191)
.+++.+|||||||+|..+..+++.|. +|+++|+++.+++.++++.. .++.+...++.+..
T Consensus 18 ~~~~~~VLDiGcG~G~~~~~l~~~g~-~v~giD~s~~~i~~a~~~~~-----------------~~~~~~~~~~~~~~-- 77 (225)
T d2p7ia1 18 FFRPGNLLELGSFKGDFTSRLQEHFN-DITCVEASEEAISHAQGRLK-----------------DGITYIHSRFEDAQ-- 77 (225)
T ss_dssp GCCSSCEEEESCTTSHHHHHHTTTCS-CEEEEESCHHHHHHHHHHSC-----------------SCEEEEESCGGGCC--
T ss_pred hCCCCcEEEEeCCCcHHHHHHHHcCC-eEEEEeCcHHHhhhhhcccc-----------------cccccccccccccc--
Confidence 35677999999999999999999886 89999999999999876532 23566666665442
Q ss_pred CCCCCCCCEEEEcccccCCCChHHHHHHHH-HHhccCCCCc
Q 038343 100 GLSAFVPEIILGADILYDRSCFPDLVRILA-ILLNRRKSVS 139 (191)
Q Consensus 100 ~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~-~ll~~~g~~~ 139 (191)
.+++||+|++.++++|.++...+++.+. ++|+|||...
T Consensus 78 --~~~~fD~I~~~~vleh~~d~~~~l~~i~~~~Lk~gG~l~ 116 (225)
T d2p7ia1 78 --LPRRYDNIVLTHVLEHIDDPVALLKRINDDWLAEGGRLF 116 (225)
T ss_dssp --CSSCEEEEEEESCGGGCSSHHHHHHHHHHTTEEEEEEEE
T ss_pred --cccccccccccceeEecCCHHHHHHHHHHHhcCCCceEE
Confidence 2468999999999999999999999997 7899997544
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.57 E-value=4.6e-15 Score=108.31 Aligned_cols=101 Identities=20% Similarity=0.143 Sum_probs=81.7
Q ss_pred CCCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCc
Q 038343 19 EIFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASE 98 (191)
Q Consensus 19 ~~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~ 98 (191)
...++.+|||+|||+|..++.+++.+. +|+++|.++.+++.+++|++.+++. .++++...|..+..
T Consensus 30 ~~~~g~~VLDiGcGsG~~s~~lA~~~~-~V~avD~~~~~l~~a~~n~~~~gl~------------~~v~~~~gda~~~~- 95 (186)
T d1l3ia_ 30 EPGKNDVAVDVGCGTGGVTLELAGRVR-RVYAIDRNPEAISTTEMNLQRHGLG------------DNVTLMEGDAPEAL- 95 (186)
T ss_dssp CCCTTCEEEEESCTTSHHHHHHHTTSS-EEEEEESCHHHHHHHHHHHHHTTCC------------TTEEEEESCHHHHH-
T ss_pred CCCCCCEEEEEECCeEcccccccccce-EEEEecCCHHHHHHHHHHHHHcCCC------------cceEEEECchhhcc-
Confidence 345788999999999999999988754 9999999999999999999999875 46777777654321
Q ss_pred CCCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCC
Q 038343 99 SGLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSV 138 (191)
Q Consensus 99 ~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~ 138 (191)
.....||+|++.... .....+++.+.+.|+|+|..
T Consensus 96 --~~~~~~D~v~~~~~~---~~~~~~~~~~~~~LkpgG~l 130 (186)
T d1l3ia_ 96 --CKIPDIDIAVVGGSG---GELQEILRIIKDKLKPGGRI 130 (186)
T ss_dssp --TTSCCEEEEEESCCT---TCHHHHHHHHHHTEEEEEEE
T ss_pred --cccCCcCEEEEeCcc---ccchHHHHHHHHHhCcCCEE
Confidence 233579999987654 45688999999999999853
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.56 E-value=2e-14 Score=111.35 Aligned_cols=111 Identities=12% Similarity=0.072 Sum_probs=88.5
Q ss_pred HHHHHhhCCCCCCCCcEEEeCCCccHHHHHHHhc-CCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEE
Q 038343 10 LSEFILSFPEIFSNKSCFEVGSGVGLVGICLAHV-KASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQC 88 (191)
Q Consensus 10 L~~~l~~~~~~~~~~~VLElG~GtG~~~~~la~~-g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~ 88 (191)
..+.+.+.....+|.+|||||||.|.++..+++. |+ +|+++|+|++.++.+++.++..++. ..+.+
T Consensus 40 k~~~~~~~l~l~~g~~VLDiGCG~G~~a~~~a~~~g~-~v~gi~ls~~q~~~a~~~~~~~~l~------------~~~~~ 106 (280)
T d2fk8a1 40 KVDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFDV-NVIGLTLSKNQHARCEQVLASIDTN------------RSRQV 106 (280)
T ss_dssp HHHHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTSCCS------------SCEEE
T ss_pred HHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhCce-eEEEecchHHHHHHHHHHHHhhccc------------cchhh
Confidence 3445556666778999999999999999887765 66 9999999999999999998887764 34555
Q ss_pred EeecCCCCCcCCCCCCCCCEEEEcccccCCC--ChHHHHHHHHHHhccCCCCc
Q 038343 89 VHLPWESASESGLSAFVPEIILGADILYDRS--CFPDLVRILAILLNRRKSVS 139 (191)
Q Consensus 89 ~~ldw~~~~~~~~~~~~fDvIi~~d~ly~~~--~~~~ll~~l~~ll~~~g~~~ 139 (191)
...|+.+. +++||.|++.+++++.. ..+.+++.+.++|||||...
T Consensus 107 ~~~d~~~~------~~~fD~i~si~~~eh~~~~~~~~~f~~i~~~LkpgG~~~ 153 (280)
T d2fk8a1 107 LLQGWEDF------AEPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMT 153 (280)
T ss_dssp EESCGGGC------CCCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEE
T ss_pred hhhhhhhh------ccchhhhhHhhHHHHhhhhhHHHHHHHHHhccCCCceEE
Confidence 55554332 35899999999999874 55899999999999998643
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.56 E-value=6.5e-16 Score=109.49 Aligned_cols=102 Identities=17% Similarity=0.194 Sum_probs=81.8
Q ss_pred CCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcC
Q 038343 20 IFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASES 99 (191)
Q Consensus 20 ~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~ 99 (191)
.++|++|||+|||||.+|+.++..|+++|+++|.++.+++.+++|++.++.. .++.+...|+.....
T Consensus 12 ~~~g~~vlDl~~GtG~~~iea~~rga~~v~~ve~~~~a~~~~~~n~~~~~~~------------~~~~ii~~D~~~~l~- 78 (152)
T d2esra1 12 YFNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAE------------NRFTLLKMEAERAID- 78 (152)
T ss_dssp CCCSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCG------------GGEEEECSCHHHHHH-
T ss_pred hCCCCeEEEcCCccCHHHHHHHHhCcceeeeehhchhhhhhhhhhhhhcccc------------cchhhhccccccccc-
Confidence 4689999999999999999999999999999999999999999999998865 457777777543321
Q ss_pred CCCCCCCCEEEEcccccCCCChHHHHHHHHH--HhccCC
Q 038343 100 GLSAFVPEIILGADILYDRSCFPDLVRILAI--LLNRRK 136 (191)
Q Consensus 100 ~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~--ll~~~g 136 (191)
....+||+|++ |+.|........+..+.. +|+++|
T Consensus 79 -~~~~~fDiIf~-DPPy~~~~~~~~l~~i~~~~~L~~~g 115 (152)
T d2esra1 79 -CLTGRFDLVFL-DPPYAKETIVATIEALAAKNLLSEQV 115 (152)
T ss_dssp -HBCSCEEEEEE-CCSSHHHHHHHHHHHHHHTTCEEEEE
T ss_pred -ccccccceeEe-chhhccchHHHHHHHHHHCCCcCCCe
Confidence 13468999998 777776677777777754 477764
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=99.56 E-value=4.1e-15 Score=112.84 Aligned_cols=100 Identities=9% Similarity=-0.002 Sum_probs=80.0
Q ss_pred CCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCC
Q 038343 21 FSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESG 100 (191)
Q Consensus 21 ~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~ 100 (191)
.++++|||+|||+|..++.+++.|. +|+++|.|+.|++.+++++..++. ++.+...|+.+..
T Consensus 36 ~~~~~vLDiGCG~G~~~~~l~~~g~-~v~GvD~S~~ml~~A~~~~~~~~~--------------~v~~~~~d~~~~~--- 97 (246)
T d1y8ca_ 36 LVFDDYLDLACGTGNLTENLCPKFK-NTWAVDLSQEMLSEAENKFRSQGL--------------KPRLACQDISNLN--- 97 (246)
T ss_dssp CCTTEEEEETCTTSTTHHHHGGGSS-EEEEECSCHHHHHHHHHHHHHTTC--------------CCEEECCCGGGCC---
T ss_pred CCCCeEEEEeCcCCHHHHHHHHhCC-ccEeeccchhhhhhccccccccCc--------------cceeeccchhhhc---
Confidence 3567999999999999999999987 899999999999999998877663 3667777765443
Q ss_pred CCCCCCCEEEEc-ccccCC---CChHHHHHHHHHHhccCCCCc
Q 038343 101 LSAFVPEIILGA-DILYDR---SCFPDLVRILAILLNRRKSVS 139 (191)
Q Consensus 101 ~~~~~fDvIi~~-d~ly~~---~~~~~ll~~l~~ll~~~g~~~ 139 (191)
..++||+|++. +++++. .+...+++.+.++|+|||...
T Consensus 98 -~~~~fD~i~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~~i 139 (246)
T d1y8ca_ 98 -INRKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFI 139 (246)
T ss_dssp -CSCCEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEE
T ss_pred -ccccccccceeeeeeeccCCHHHHHHHHHHHHHhCCCCeEEE
Confidence 23589999974 566544 356668999999999998644
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=99.55 E-value=4.1e-15 Score=113.46 Aligned_cols=104 Identities=11% Similarity=-0.080 Sum_probs=81.9
Q ss_pred CCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCCC
Q 038343 22 SNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESGL 101 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~~ 101 (191)
++.+|||||||+|.....+++.+..+|+++|+|+.+++.+++.....+.. .++.+...|...... .
T Consensus 24 ~~~~VLDlGCG~G~~~~~~~~~~~~~v~GiD~S~~~l~~A~~r~~~~~~~------------~~v~f~~~D~~~~~~--~ 89 (252)
T d1ri5a_ 24 RGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRR------------FKVFFRAQDSYGRHM--D 89 (252)
T ss_dssp TTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCS------------SEEEEEESCTTTSCC--C
T ss_pred CcCEEEEecccCcHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHhcCCC------------cceEEEEcchhhhcc--c
Confidence 67899999999998888888888778999999999999999877665533 357777777643321 1
Q ss_pred CCCCCCEEEEcccccCC----CChHHHHHHHHHHhccCCCCc
Q 038343 102 SAFVPEIILGADILYDR----SCFPDLVRILAILLNRRKSVS 139 (191)
Q Consensus 102 ~~~~fDvIi~~d~ly~~----~~~~~ll~~l~~ll~~~g~~~ 139 (191)
...+||+|++..++++. .....+++.+.++|+|||...
T Consensus 90 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i 131 (252)
T d1ri5a_ 90 LGKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFI 131 (252)
T ss_dssp CSSCEEEEEEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEE
T ss_pred ccccceEEEEcceeeecCCCHHHHHHHHHHHhceeCCCCEEE
Confidence 34579999999988864 345678999999999998643
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.55 E-value=1.6e-14 Score=113.35 Aligned_cols=112 Identities=23% Similarity=0.331 Sum_probs=85.6
Q ss_pred HHHhhCCCCCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEee
Q 038343 12 EFILSFPEIFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHL 91 (191)
Q Consensus 12 ~~l~~~~~~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~l 91 (191)
+.+.++...+++++|||||||+|.+++.+++.|+++|+++|.++.+. .+++++..++.. .++.+...
T Consensus 25 ~ai~~~~~~~~~~~VLDiGcG~G~lsl~aa~~Ga~~V~aid~s~~~~-~a~~~~~~~~~~------------~~i~~~~~ 91 (311)
T d2fyta1 25 DFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILY-QAMDIIRLNKLE------------DTITLIKG 91 (311)
T ss_dssp HHHHHCGGGTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESSTHHH-HHHHHHHHTTCT------------TTEEEEES
T ss_pred HHHHhccccCCcCEEEEECCCCCHHHHHHHHcCCCEEEEEeCHHHHH-HHHHHHHHhCCC------------ccceEEEe
Confidence 34556666778999999999999999999999998999999998775 456666676654 46777777
Q ss_pred cCCCCCcCCCCCCCCCEEEEccccc---CCCChHHHHHHHHHHhccCCCCc
Q 038343 92 PWESASESGLSAFVPEIILGADILY---DRSCFPDLVRILAILLNRRKSVS 139 (191)
Q Consensus 92 dw~~~~~~~~~~~~fDvIi~~d~ly---~~~~~~~ll~~l~~ll~~~g~~~ 139 (191)
+..+.. .+..+||+|++.-+.+ .....+.++...+++|+|+|...
T Consensus 92 ~~~~l~---~~~~~~D~Ivse~~~~~~~~e~~~~~~~~a~~~~Lkp~G~ii 139 (311)
T d2fyta1 92 KIEEVH---LPVEKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVY 139 (311)
T ss_dssp CTTTSC---CSCSCEEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred eHHHhc---CccccceEEEEeeeeeecccccccHHHHHHHHhcCCCCcEEe
Confidence 765542 3446899999854333 34567788888999999998543
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.53 E-value=8.1e-14 Score=108.31 Aligned_cols=110 Identities=9% Similarity=0.019 Sum_probs=88.6
Q ss_pred HHHHHHhhCCCCCCCCcEEEeCCCccHHHHHHH-hcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeE
Q 038343 9 LLSEFILSFPEIFSNKSCFEVGSGVGLVGICLA-HVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQ 87 (191)
Q Consensus 9 ~L~~~l~~~~~~~~~~~VLElG~GtG~~~~~la-~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~ 87 (191)
...+.+.......+|.+|||||||.|.+++.++ +.|+ +|+++++|++.++.+++.+...++. ..+.
T Consensus 48 ~k~~~~~~~l~l~~G~~VLDiGCG~G~~~~~~a~~~g~-~v~git~s~~q~~~a~~~~~~~~l~------------~~v~ 114 (291)
T d1kpia_ 48 AKRKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYDV-NVIGLTLSENQYAHDKAMFDEVDSP------------RRKE 114 (291)
T ss_dssp HHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHHSCCS------------SCEE
T ss_pred HHHHHHHHhcCCCCCCEEEEecCcchHHHHHHHHhcCc-ceeeccchHHHHHHHHHHHHhhccc------------hhhh
Confidence 344556666677799999999999999998766 4676 9999999999999999998887765 4566
Q ss_pred EEeecCCCCCcCCCCCCCCCEEEEcccccCCCC---------hHHHHHHHHHHhccCCC
Q 038343 88 CVHLPWESASESGLSAFVPEIILGADILYDRSC---------FPDLVRILAILLNRRKS 137 (191)
Q Consensus 88 ~~~ldw~~~~~~~~~~~~fDvIi~~d~ly~~~~---------~~~ll~~l~~ll~~~g~ 137 (191)
+...|+.. .+++||.|++-.++.+..+ .+.+++.+.++|+|||.
T Consensus 115 ~~~~d~~~------~~~~fD~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~ 167 (291)
T d1kpia_ 115 VRIQGWEE------FDEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGR 167 (291)
T ss_dssp EEECCGGG------CCCCCSEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCE
T ss_pred hhhhcccc------cccccceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCc
Confidence 66665432 3468999999999988754 68999999999999974
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=99.52 E-value=2.2e-14 Score=107.41 Aligned_cols=102 Identities=10% Similarity=0.032 Sum_probs=79.1
Q ss_pred CCCCcEEEeCCCccHHHHHHHhc---CCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCC
Q 038343 21 FSNKSCFEVGSGVGLVGICLAHV---KASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESAS 97 (191)
Q Consensus 21 ~~~~~VLElG~GtG~~~~~la~~---g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~ 97 (191)
.++.+|||||||+|..+..+++. ...+|+++|.|+.|++.++++++..+.. ..+.+...+..+
T Consensus 38 ~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~------------~~~~~~~~d~~~-- 103 (225)
T d1im8a_ 38 TADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSE------------IPVEILCNDIRH-- 103 (225)
T ss_dssp CTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCS------------SCEEEECSCTTT--
T ss_pred CCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhccc------------chhhhccchhhc--
Confidence 36779999999999999887763 2239999999999999999998766543 345555544332
Q ss_pred cCCCCCCCCCEEEEcccccCC--CChHHHHHHHHHHhccCCCCc
Q 038343 98 ESGLSAFVPEIILGADILYDR--SCFPDLVRILAILLNRRKSVS 139 (191)
Q Consensus 98 ~~~~~~~~fDvIi~~d~ly~~--~~~~~ll~~l~~ll~~~g~~~ 139 (191)
++...+|+|+++.++++. ++...+++.+.+.|+|||...
T Consensus 104 ---~~~~~~d~i~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~li 144 (225)
T d1im8a_ 104 ---VEIKNASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLV 144 (225)
T ss_dssp ---CCCCSEEEEEEESCGGGSCGGGHHHHHHHHHHHEEEEEEEE
T ss_pred ---cccccceeeEEeeeccccChhhHHHHHHHHHHhCCCCceee
Confidence 233578999999999876 467799999999999998543
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.51 E-value=1.5e-13 Score=106.44 Aligned_cols=111 Identities=10% Similarity=0.061 Sum_probs=92.0
Q ss_pred HHHHHHHhhCCCCCCCCcEEEeCCCccHHHHHHHh-cCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCee
Q 038343 8 LLLSEFILSFPEIFSNKSCFEVGSGVGLVGICLAH-VKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVV 86 (191)
Q Consensus 8 ~~L~~~l~~~~~~~~~~~VLElG~GtG~~~~~la~-~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i 86 (191)
..+.+++.......+|.+|||||||.|.+++.+++ .|+ +|+++++|++.++.+++.++..++. .++
T Consensus 48 ~~k~~~~~~~l~l~~G~~VLDiGCG~G~~a~~~a~~~g~-~v~git~s~~Q~~~a~~~~~~~g~~------------~~v 114 (285)
T d1kpga_ 48 IAKIDLALGKLGLQPGMTLLDVGCGWGATMMRAVEKYDV-NVVGLTLSKNQANHVQQLVANSENL------------RSK 114 (285)
T ss_dssp HHHHHHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTCCCC------------SCE
T ss_pred HHHHHHHHHHcCCCCCCEEEEecCcchHHHHHHHhcCCc-ceEEEeccHHHHHHHHHHHHhhhhh------------hhh
Confidence 44556677777777999999999999999996555 566 9999999999999999988877755 567
Q ss_pred EEEeecCCCCCcCCCCCCCCCEEEEcccccCC--CChHHHHHHHHHHhccCCC
Q 038343 87 QCVHLPWESASESGLSAFVPEIILGADILYDR--SCFPDLVRILAILLNRRKS 137 (191)
Q Consensus 87 ~~~~ldw~~~~~~~~~~~~fDvIi~~d~ly~~--~~~~~ll~~l~~ll~~~g~ 137 (191)
.+...|+.+. +++||.|++-.++.+. .....+++.+.++|+|||.
T Consensus 115 ~~~~~d~~~~------~~~fD~i~si~~~eh~~~~~~~~~~~~~~r~LkpgG~ 161 (285)
T d1kpga_ 115 RVLLAGWEQF------DEPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGV 161 (285)
T ss_dssp EEEESCGGGC------CCCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCE
T ss_pred HHHHhhhhcc------cccccceeeehhhhhcCchhHHHHHHHHHhhcCCCCc
Confidence 8888887543 2589999999999987 4568999999999999985
|
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Probab=99.50 E-value=1.2e-13 Score=106.22 Aligned_cols=94 Identities=17% Similarity=0.188 Sum_probs=72.4
Q ss_pred cHHHHHHHHhhCCCCCCCCcEEEeCCCccHHHHHHHhc-CCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCC
Q 038343 6 SSLLLSEFILSFPEIFSNKSCFEVGSGVGLVGICLAHV-KASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPN 84 (191)
Q Consensus 6 ~a~~L~~~l~~~~~~~~~~~VLElG~GtG~~~~~la~~-g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~ 84 (191)
-+..|.+.+..... ..+.+|||+|||+|.+++.+++. ...+|+++|+++.+++.+++|++.++..
T Consensus 93 eTE~lv~~~l~~~~-~~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~~Na~~~~~~------------- 158 (274)
T d2b3ta1 93 DTECLVEQALARLP-EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIK------------- 158 (274)
T ss_dssp THHHHHHHHHHHSC-SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCC-------------
T ss_pred chhhhhhhHhhhhc-ccccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHHHHHHHhCcc-------------
Confidence 45666666554322 24568999999999999977764 3459999999999999999999998864
Q ss_pred eeEEEeecCCCCCcCCCCCCCCCEEEEcccccC
Q 038343 85 VVQCVHLPWESASESGLSAFVPEIILGADILYD 117 (191)
Q Consensus 85 ~i~~~~ldw~~~~~~~~~~~~fDvIi~~d~ly~ 117 (191)
++.+...||.+. +.+.+||+|+++.....
T Consensus 159 ~v~~~~~d~~~~----~~~~~fDlIvsNPPYi~ 187 (274)
T d2b3ta1 159 NIHILQSDWFSA----LAGQQFAMIVSNPPYID 187 (274)
T ss_dssp SEEEECCSTTGG----GTTCCEEEEEECCCCBC
T ss_pred cceeeecccccc----cCCCceeEEEecchhhh
Confidence 478888888654 23468999999766543
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=99.50 E-value=2.3e-14 Score=109.52 Aligned_cols=101 Identities=13% Similarity=0.075 Sum_probs=78.1
Q ss_pred CCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCC
Q 038343 21 FSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESG 100 (191)
Q Consensus 21 ~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~ 100 (191)
.+..+|||+|||+|..+..++..+..+|+++|.++.+++.++++.... ..+.+...+..+..
T Consensus 92 ~~~~~vLD~GcG~G~~t~~ll~~~~~~v~~vD~s~~~l~~a~~~~~~~---------------~~~~~~~~d~~~~~--- 153 (254)
T d1xtpa_ 92 HGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGM---------------PVGKFILASMETAT--- 153 (254)
T ss_dssp CCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTS---------------SEEEEEESCGGGCC---
T ss_pred CCCCeEEEecccCChhhHHHHhhcCceEEEEcCCHHHHHhhhcccccc---------------ccceeEEccccccc---
Confidence 466799999999999888666544558999999999999998765322 24566666654332
Q ss_pred CCCCCCCEEEEcccccCCCCh--HHHHHHHHHHhccCCCCc
Q 038343 101 LSAFVPEIILGADILYDRSCF--PDLVRILAILLNRRKSVS 139 (191)
Q Consensus 101 ~~~~~fDvIi~~d~ly~~~~~--~~ll~~l~~ll~~~g~~~ 139 (191)
+++++||+|++..++++..+. ..+++.++++|+|+|...
T Consensus 154 ~~~~~fD~I~~~~vl~hl~d~d~~~~l~~~~~~LkpgG~ii 194 (254)
T d1xtpa_ 154 LPPNTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIF 194 (254)
T ss_dssp CCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEE
T ss_pred cCCCccceEEeeccccccchhhhHHHHHHHHHhcCCCcEEE
Confidence 345789999999999998664 578999999999998544
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.49 E-value=6.4e-15 Score=114.68 Aligned_cols=108 Identities=10% Similarity=0.027 Sum_probs=78.3
Q ss_pred CCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCCC
Q 038343 22 SNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESGL 101 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~~ 101 (191)
++++|||+|||+|..++.+++.|. +|+++|+|+.||+.++++...++..... ....+...+|........
T Consensus 56 ~~~~vLD~GcG~G~~~~~la~~g~-~v~gvD~S~~ml~~A~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~ 125 (292)
T d1xvaa_ 56 GCHRVLDVACGTGVDSIMLVEEGF-SVTSVDASDKMLKYALKERWNRRKEPAF---------DKWVIEEANWLTLDKDVP 125 (292)
T ss_dssp TCCEEEESSCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTTSHHH---------HTCEEEECCGGGHHHHSC
T ss_pred CCCEEEEecCCCcHHHHHHHHcCC-eeeeccCchHHHHHHHHHHHhccccccc---------ceeeeeeccccccccccC
Confidence 467999999999999999999987 8999999999999999988776543211 123445555532211112
Q ss_pred CCCCCCEEEEc-ccccCCC-------ChHHHHHHHHHHhccCCCCc
Q 038343 102 SAFVPEIILGA-DILYDRS-------CFPDLVRILAILLNRRKSVS 139 (191)
Q Consensus 102 ~~~~fDvIi~~-d~ly~~~-------~~~~ll~~l~~ll~~~g~~~ 139 (191)
...+||+|++. +++.+.. +...+++.+.++|+|||...
T Consensus 126 ~~~~fd~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li 171 (292)
T d1xvaa_ 126 AGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLV 171 (292)
T ss_dssp CTTCEEEEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEE
T ss_pred CCCCceEEEEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEE
Confidence 33579999874 4665543 35679999999999998644
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.48 E-value=2.1e-14 Score=110.89 Aligned_cols=108 Identities=9% Similarity=0.036 Sum_probs=75.2
Q ss_pred CCcEEEeCCCccHHHHHHHhc------CC-CeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCC
Q 038343 23 NKSCFEVGSGVGLVGICLAHV------KA-SKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWES 95 (191)
Q Consensus 23 ~~~VLElG~GtG~~~~~la~~------g~-~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~ 95 (191)
+.+|||+|||+|..+..+++. +. .+++++|.++.+++.+++++....... ...+.+...+++.
T Consensus 41 ~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~----------~~~~~~~~~~~~~ 110 (280)
T d1jqea_ 41 EIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLE----------NVKFAWHKETSSE 110 (280)
T ss_dssp EEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCT----------TEEEEEECSCHHH
T ss_pred CCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccc----------cccccchhhhhhh
Confidence 347999999999887755432 11 268999999999999998875432110 0122233332211
Q ss_pred C---CcCCCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCcc
Q 038343 96 A---SESGLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVSS 140 (191)
Q Consensus 96 ~---~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~~ 140 (191)
. ......+++||+|++..++|+.+++..+++.+.++|+|+|....
T Consensus 111 ~~~~~~~~~~~~~fD~I~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~i 158 (280)
T d1jqea_ 111 YQSRMLEKKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLI 158 (280)
T ss_dssp HHHHHTTSSSCCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEE
T ss_pred hcchhcccCCCCceeEEEEccceecCCCHHHHHHHHHhhCCCCCEEEE
Confidence 0 01123457899999999999999999999999999999985443
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.47 E-value=8.9e-15 Score=110.14 Aligned_cols=102 Identities=14% Similarity=0.105 Sum_probs=77.0
Q ss_pred CCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCCC
Q 038343 22 SNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESGL 101 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~~ 101 (191)
+|.+|||+|||+|..+..+++.+..+|+++|+++.+++.++++.+... ..+.....++.... ..+
T Consensus 53 ~g~~VLdIGcG~G~~a~~~a~~~~~~v~~id~s~~~~~~a~~~~~~~~--------------~~~~~~~~~~~~~~-~~~ 117 (229)
T d1zx0a1 53 KGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQT--------------HKVIPLKGLWEDVA-PTL 117 (229)
T ss_dssp TCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCS--------------SEEEEEESCHHHHG-GGS
T ss_pred CCCeEEEeeccchHHHHHHHHcCCCeEEEeCCCHHHHHHHHHHhhhcc--------------cccccccccccccc-ccc
Confidence 577999999999999998888766689999999999999998865543 23444554443221 124
Q ss_pred CCCCCCEEEE-----cccccCCCChHHHHHHHHHHhccCCCC
Q 038343 102 SAFVPEIILG-----ADILYDRSCFPDLVRILAILLNRRKSV 138 (191)
Q Consensus 102 ~~~~fDvIi~-----~d~ly~~~~~~~ll~~l~~ll~~~g~~ 138 (191)
++++||.|+. ...+++..+.+.+++.+.++|||||..
T Consensus 118 ~~~~fD~i~fD~~~~~~~~~~~~~~~~~~~~~~r~LkpGG~~ 159 (229)
T d1zx0a1 118 PDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVL 159 (229)
T ss_dssp CTTCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEE
T ss_pred ccccccceeecccccccccccccCHHHHHHHHHHHcCCCcEE
Confidence 5568988873 445556667888999999999999854
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.43 E-value=8.1e-14 Score=104.68 Aligned_cols=131 Identities=11% Similarity=-0.052 Sum_probs=90.9
Q ss_pred HHHHHHHHhhCCCCCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCc----ccccccCC
Q 038343 7 SLLLSEFILSFPEIFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDT----SLLESYED 82 (191)
Q Consensus 7 a~~L~~~l~~~~~~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~----~~~~~~~~ 82 (191)
...|.+++.+.....++.+|||+|||+|..+..+++.|. +|+++|+|+.+++.++++.......... ........
T Consensus 30 ~~~l~~~~~~~l~~~~~~rvLd~GCG~G~~a~~LA~~G~-~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (229)
T d2bzga1 30 HQLLKKHLDTFLKGKSGLRVFFPLCGKAVEMKWFADRGH-SVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSS 108 (229)
T ss_dssp CHHHHHHHHHHHTTCCSCEEEETTCTTCTHHHHHHHTTC-EEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEET
T ss_pred CHHHHHHHHHhcCCCCCCEEEEeCCCCcHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeec
Confidence 455667766554445788999999999999999999998 8999999999999888765433211000 00000112
Q ss_pred CCeeEEEeecCCCCCcCCCCCCCCCEEEEcccccCC--CChHHHHHHHHHHhccCCCCcc
Q 038343 83 PNVVQCVHLPWESASESGLSAFVPEIILGADILYDR--SCFPDLVRILAILLNRRKSVSS 140 (191)
Q Consensus 83 ~~~i~~~~ldw~~~~~~~~~~~~fDvIi~~d~ly~~--~~~~~ll~~l~~ll~~~g~~~~ 140 (191)
...+.+...|+.+... ...+.||+|+...++++. +..+..++.+.++|+|||....
T Consensus 109 ~~~v~~~~~d~~~l~~--~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~LkpgG~~~l 166 (229)
T d2bzga1 109 SGNISLYCCSIFDLPR--TNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKKFQYLL 166 (229)
T ss_dssp TSSEEEEESCGGGGGG--SCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEE
T ss_pred CCcEEEEEcchhhccc--cccCceeEEEEEEEEEeccchhhHHHHHHHHhhcCCcceEEE
Confidence 2356666666543221 234689999999888865 5678899999999999986443
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.43 E-value=3.9e-13 Score=101.07 Aligned_cols=122 Identities=10% Similarity=0.036 Sum_probs=88.2
Q ss_pred ccccHH-HHHHHHhhC---CCCCCCCcEEEeCCCccHHHHHHHhcCC-CeEEEEcCChHHHHHHHHHHHHhcCCCCcccc
Q 038343 3 IWPSSL-LLSEFILSF---PEIFSNKSCFEVGSGVGLVGICLAHVKA-SKVTLTDGDHLTLANMRSNLELNQLSTDTSLL 77 (191)
Q Consensus 3 ~W~~a~-~L~~~l~~~---~~~~~~~~VLElG~GtG~~~~~la~~g~-~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~ 77 (191)
.|+.-. .|+..+... ....+|.+|||||||+|.....++..+. ..|+++|+++.+++.++.++..+.
T Consensus 51 ~w~p~rsklaA~i~~gl~~l~ikpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~~~-------- 122 (230)
T d1g8sa_ 51 IWNPNKSKLAAAIIKGLKVMPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERE-------- 122 (230)
T ss_dssp ECCTTTCHHHHHHHTTCCCCCCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCT--------
T ss_pred eECCCccHHHHHHHhhHHhCCCCCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhhhc--------
Confidence 465533 555555443 2345789999999999999998888643 489999999999999987654432
Q ss_pred cccCCCCeeEEEeecCCCCCcCCCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCccc
Q 038343 78 ESYEDPNVVQCVHLPWESASESGLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVSSS 141 (191)
Q Consensus 78 ~~~~~~~~i~~~~ldw~~~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~~~ 141 (191)
++.....+..... ...+..+|++++...+++....+.+++.++++|||+|....+
T Consensus 123 -------ni~~i~~d~~~~~--~~~~~~~~v~~i~~~~~~~~~~~~~l~~~~r~LKpgG~~~i~ 177 (230)
T d1g8sa_ 123 -------NIIPILGDANKPQ--EYANIVEKVDVIYEDVAQPNQAEILIKNAKWFLKKGGYGMIA 177 (230)
T ss_dssp -------TEEEEECCTTCGG--GGTTTCCCEEEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred -------ccceEEEeeccCc--ccccccceeEEeeccccchHHHHHHHHHHHHhcccCceEEEE
Confidence 3444555544332 233456788777777888888999999999999999865543
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.42 E-value=4.9e-13 Score=99.18 Aligned_cols=125 Identities=10% Similarity=0.052 Sum_probs=85.8
Q ss_pred ccccHH-HHHHHHhh--CCCCCCCCcEEEeCCCccHHHHHHHhc-CCCeEEEEcCChHHHHHHHHHHHHhcCCCCccccc
Q 038343 3 IWPSSL-LLSEFILS--FPEIFSNKSCFEVGSGVGLVGICLAHV-KASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLE 78 (191)
Q Consensus 3 ~W~~a~-~L~~~l~~--~~~~~~~~~VLElG~GtG~~~~~la~~-g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~ 78 (191)
.|+.-+ .|+..+.. .....+|.+|||||||+|.....++.. +..+|+++|+++.+++.++++++..+
T Consensus 34 ~w~p~rsklaa~i~~g~~l~lkpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~~--------- 104 (209)
T d1nt2a_ 34 EWVPWRSKLAAMILKGHRLKLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERN--------- 104 (209)
T ss_dssp ECCGGGCHHHHHHHTSCCCCCCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCS---------
T ss_pred eeCCcchHHHHHHhccccCCCCCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhccC---------
Confidence 465432 45555544 234558899999999999988888875 44589999999999999998876643
Q ss_pred ccCCCCeeEEEeecCCCCCcCCCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCcccccc
Q 038343 79 SYEDPNVVQCVHLPWESASESGLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVSSSRKE 144 (191)
Q Consensus 79 ~~~~~~~i~~~~ldw~~~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~~~~~~ 144 (191)
++.+...+.............+|+|+. .+++......+++.+.++|||||.......+
T Consensus 105 ------ni~~i~~d~~~~~~~~~~~~~vd~v~~--~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 162 (209)
T d1nt2a_ 105 ------NIIPLLFDASKPWKYSGIVEKVDLIYQ--DIAQKNQIEILKANAEFFLKEKGEVVIMVKA 162 (209)
T ss_dssp ------SEEEECSCTTCGGGTTTTCCCEEEEEE--CCCSTTHHHHHHHHHHHHEEEEEEEEEEEEH
T ss_pred ------CceEEEeeccCccccccccceEEEEEe--cccChhhHHHHHHHHHHHhccCCeEEEEEEc
Confidence 355555555443221111223454443 3667778889999999999999976654443
|
| >d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methylase YhhF species: Escherichia coli [TaxId: 562]
Probab=99.42 E-value=3e-13 Score=98.32 Aligned_cols=100 Identities=17% Similarity=0.187 Sum_probs=78.7
Q ss_pred CCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCC
Q 038343 21 FSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESG 100 (191)
Q Consensus 21 ~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~ 100 (191)
+.+.+||||+||||.+|+.++..|+++|+++|.++.+++.+++|++.++.. ++.+...|..+...
T Consensus 42 ~~~~~vLDlfaGsG~~giealsrGa~~v~~VE~~~~a~~~~k~N~~~~~~~-------------~~~ii~~d~~~~l~-- 106 (183)
T d2fpoa1 42 IVDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKAG-------------NARVVNSNAMSFLA-- 106 (183)
T ss_dssp HTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCC-------------SEEEECSCHHHHHS--
T ss_pred cchhhhhhhhccccceeeeEEecCcceeEEEEEeechhhHHHHHHhhcccc-------------ceeeeeeccccccc--
Confidence 477899999999999999999999999999999999999999999887643 34555544322211
Q ss_pred CCCCCCCEEEEcccccCCCChHHHHHHHHH--HhccCC
Q 038343 101 LSAFVPEIILGADILYDRSCFPDLVRILAI--LLNRRK 136 (191)
Q Consensus 101 ~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~--ll~~~g 136 (191)
....+||+|++ |.-|.....+.++..+.+ +|+++|
T Consensus 107 ~~~~~fDlIf~-DPPY~~~~~~~~l~~l~~~~~L~~~~ 143 (183)
T d2fpoa1 107 QKGTPHNIVFV-DPPFRRGLLEETINLLEDNGWLADEA 143 (183)
T ss_dssp SCCCCEEEEEE-CCSSSTTTHHHHHHHHHHTTCEEEEE
T ss_pred ccccccCEEEE-cCccccchHHHHHHHHHHCCCCCCCe
Confidence 13457999998 677888888888888876 577764
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=99.41 E-value=7.1e-14 Score=101.73 Aligned_cols=126 Identities=8% Similarity=-0.096 Sum_probs=86.0
Q ss_pred HHHHHhhCCCCCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEE
Q 038343 10 LSEFILSFPEIFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCV 89 (191)
Q Consensus 10 L~~~l~~~~~~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~ 89 (191)
|.+|+... ...++.+|||+|||+|..++.+++.|. +|+++|+|+.+++.+++..+......... .........+.+.
T Consensus 9 ~~~~~~~l-~~~~~~rvLd~GCG~G~~a~~la~~G~-~V~gvD~S~~~i~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 85 (201)
T d1pjza_ 9 LQQYWSSL-NVVPGARVLVPLCGKSQDMSWLSGQGY-HVVGAELSEAAVERYFTERGEQPHITSQG-DFKVYAAPGIEIW 85 (201)
T ss_dssp HHHHHHHH-CCCTTCEEEETTTCCSHHHHHHHHHCC-EEEEEEECHHHHHHHHHHHCSCSEEEEET-TEEEEECSSSEEE
T ss_pred HHHHHHHc-CCCCCCEEEEecCcCCHHHHHHHHcCC-ceEeecccHHHHHHHHHHhccccchhhhh-hhhhcccccccee
Confidence 44555443 344788999999999999999999998 99999999999999988764432210000 0000011234455
Q ss_pred eecCCCCCcCCCCCCCCCEEEEcccccCCC--ChHHHHHHHHHHhccCCCCcc
Q 038343 90 HLPWESASESGLSAFVPEIILGADILYDRS--CFPDLVRILAILLNRRKSVSS 140 (191)
Q Consensus 90 ~ldw~~~~~~~~~~~~fDvIi~~d~ly~~~--~~~~ll~~l~~ll~~~g~~~~ 140 (191)
..++.+... .....||+|+++.++++.. .....++.+.++|||||....
T Consensus 86 ~~d~~~l~~--~~~~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~LkpgG~l~l 136 (201)
T d1pjza_ 86 CGDFFALTA--RDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLL 136 (201)
T ss_dssp EECCSSSTH--HHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEE
T ss_pred ccccccccc--ccccceeEEEEEeeeEecchhhhHHHHHHHHHhcCCCcEEEE
Confidence 555544321 1224799999999988765 467899999999999986543
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=99.41 E-value=1.3e-12 Score=99.15 Aligned_cols=105 Identities=15% Similarity=0.114 Sum_probs=81.2
Q ss_pred HhhCCCCCCCCcEEEeCCCccHHHHHHHhc-CC-CeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEee
Q 038343 14 ILSFPEIFSNKSCFEVGSGVGLVGICLAHV-KA-SKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHL 91 (191)
Q Consensus 14 l~~~~~~~~~~~VLElG~GtG~~~~~la~~-g~-~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~l 91 (191)
+.......+|.+|||+|||+|.+++.+++. +. .+|+++|.++++++.+++|++.+... .++.+...
T Consensus 77 Ii~~l~i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~------------~nv~~~~~ 144 (250)
T d1yb2a1 77 IIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDI------------GNVRTSRS 144 (250)
T ss_dssp ----CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCC------------TTEEEECS
T ss_pred HHHHcCCCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCC------------CceEEEEe
Confidence 334455678999999999999999988864 43 48999999999999999999886543 46778887
Q ss_pred cCCCCCcCCCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCc
Q 038343 92 PWESASESGLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVS 139 (191)
Q Consensus 92 dw~~~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~ 139 (191)
|+.+. +.+..||.|+. +..+...+++.+.++|||||...
T Consensus 145 Di~~~----~~~~~fD~V~l-----d~p~p~~~l~~~~~~LKpGG~lv 183 (250)
T d1yb2a1 145 DIADF----ISDQMYDAVIA-----DIPDPWNHVQKIASMMKPGSVAT 183 (250)
T ss_dssp CTTTC----CCSCCEEEEEE-----CCSCGGGSHHHHHHTEEEEEEEE
T ss_pred eeecc----cccceeeeeee-----cCCchHHHHHHHHHhcCCCceEE
Confidence 77654 24468999986 45667788999999999997543
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.40 E-value=7.4e-13 Score=97.60 Aligned_cols=78 Identities=13% Similarity=0.062 Sum_probs=62.0
Q ss_pred CCCCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCC
Q 038343 18 PEIFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESAS 97 (191)
Q Consensus 18 ~~~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~ 97 (191)
....+|++|||+|||+|.+++.++..|+.+|+++|+++.+++.+++|++.++.. ..+...|....
T Consensus 42 ~~dl~g~~vLDlg~GtG~l~i~a~~~g~~~v~~vdi~~~~~~~a~~N~~~~~~~--------------~~~~~~d~~~~- 106 (201)
T d1wy7a1 42 LGDIEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKGK--------------FKVFIGDVSEF- 106 (201)
T ss_dssp TTSSTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTTS--------------EEEEESCGGGC-
T ss_pred cCCCCCCEEEECcCcchHHHHHHHHcCCCEEEEEcCcHHHHHHHHHHHHHcCCC--------------ceEEECchhhh-
Confidence 345688999999999999999988999889999999999999999998877643 45555554322
Q ss_pred cCCCCCCCCCEEEEcccc
Q 038343 98 ESGLSAFVPEIILGADIL 115 (191)
Q Consensus 98 ~~~~~~~~fDvIi~~d~l 115 (191)
..+||+|++...+
T Consensus 107 -----~~~fD~Vi~nPP~ 119 (201)
T d1wy7a1 107 -----NSRVDIVIMNPPF 119 (201)
T ss_dssp -----CCCCSEEEECCCC
T ss_pred -----CCcCcEEEEcCcc
Confidence 3579999985543
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=99.40 E-value=2.8e-13 Score=99.93 Aligned_cols=91 Identities=12% Similarity=0.006 Sum_probs=71.8
Q ss_pred CCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCCC
Q 038343 22 SNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESGL 101 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~~ 101 (191)
++.+|||+|||+|.....++ +++++|.++.+++.++++ + +.+...+..+.. +
T Consensus 36 ~~~~vLDiGcG~G~~~~~~~-----~~~giD~s~~~~~~a~~~----~----------------~~~~~~d~~~l~---~ 87 (208)
T d1vlma_ 36 PEGRGVEIGVGTGRFAVPLK-----IKIGVEPSERMAEIARKR----G----------------VFVLKGTAENLP---L 87 (208)
T ss_dssp CSSCEEEETCTTSTTHHHHT-----CCEEEESCHHHHHHHHHT----T----------------CEEEECBTTBCC---S
T ss_pred CCCeEEEECCCCcccccccc-----eEEEEeCChhhccccccc----c----------------cccccccccccc---c
Confidence 45589999999997766552 578999999999988752 1 345555554332 3
Q ss_pred CCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCcc
Q 038343 102 SAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVSS 140 (191)
Q Consensus 102 ~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~~ 140 (191)
.+++||+|++..++++.++...+++.+.++|+|||...+
T Consensus 88 ~~~~fD~I~~~~~l~h~~d~~~~l~~~~~~L~pgG~l~i 126 (208)
T d1vlma_ 88 KDESFDFALMVTTICFVDDPERALKEAYRILKKGGYLIV 126 (208)
T ss_dssp CTTCEEEEEEESCGGGSSCHHHHHHHHHHHEEEEEEEEE
T ss_pred ccccccccccccccccccccccchhhhhhcCCCCceEEE
Confidence 557899999999999999999999999999999986443
|
| >d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase EF2452 species: Enterococcus faecalis [TaxId: 1351]
Probab=99.40 E-value=9.3e-14 Score=101.00 Aligned_cols=104 Identities=14% Similarity=0.158 Sum_probs=81.9
Q ss_pred CCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcC
Q 038343 20 IFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASES 99 (191)
Q Consensus 20 ~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~ 99 (191)
..++.+||||+||||.+|+.++..|+++|+++|.++.+++.+++|++.++.. .++.+...|..+....
T Consensus 39 ~~~~~~vLDlfaGsG~~g~ea~srGa~~v~~ve~~~~a~~~~~~N~~~~~~~------------~~~~i~~~D~~~~l~~ 106 (182)
T d2fhpa1 39 YFDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEP------------EKFEVRKMDANRALEQ 106 (182)
T ss_dssp CCSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCG------------GGEEEEESCHHHHHHH
T ss_pred hcCCCEEEEcccccccccceeeecchhHHHHHHHHHHHHHHHHHHhhhhhcc------------cccccccccchhhhhh
Confidence 4578999999999999999999999999999999999999999999988754 3566776664332111
Q ss_pred -CCCCCCCCEEEEcccccCCCChHHHHHHHHH--HhccCC
Q 038343 100 -GLSAFVPEIILGADILYDRSCFPDLVRILAI--LLNRRK 136 (191)
Q Consensus 100 -~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~--ll~~~g 136 (191)
.....+||+|++ |.-|.......++..+.. +|+++|
T Consensus 107 ~~~~~~~fDlIfl-DPPY~~~~~~~~l~~i~~~~~L~~~g 145 (182)
T d2fhpa1 107 FYEEKLQFDLVLL-DPPYAKQEIVSQLEKMLERQLLTNEA 145 (182)
T ss_dssp HHHTTCCEEEEEE-CCCGGGCCHHHHHHHHHHTTCEEEEE
T ss_pred hcccCCCcceEEe-chhhhhhHHHHHHHHHHHCCCCCCCE
Confidence 012347999987 777888888888888765 688775
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.39 E-value=1.2e-13 Score=108.97 Aligned_cols=102 Identities=14% Similarity=0.012 Sum_probs=76.6
Q ss_pred CCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcC-C
Q 038343 22 SNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASES-G 100 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~-~ 100 (191)
++++|||+|||+|..++.+++.|+++|+++|+++.+++.+++|++.|++. .++.+...|..+.... .
T Consensus 145 ~g~~VLDl~~g~G~~si~~a~~ga~~V~~vD~s~~al~~a~~N~~~ngl~------------~~~~~~~~d~~~~~~~~~ 212 (324)
T d2as0a2 145 PGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVE------------DRMKFIVGSAFEEMEKLQ 212 (324)
T ss_dssp TTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCG------------GGEEEEESCHHHHHHHHH
T ss_pred CCCeeecccCcccchhhhhhhcCCcEEEeecCCHHHHHHHHHHHHHcCCC------------ccceeeechhhhhhHHHH
Confidence 68899999999999999999999889999999999999999999999975 3456666553221100 0
Q ss_pred CCCCCCCEEEEcccccCCC----------ChHHHHHHHHHHhccCC
Q 038343 101 LSAFVPEIILGADILYDRS----------CFPDLVRILAILLNRRK 136 (191)
Q Consensus 101 ~~~~~fDvIi~~d~ly~~~----------~~~~ll~~l~~ll~~~g 136 (191)
....+||+|++ |..+... .+..++....++|+|||
T Consensus 213 ~~~~~fD~Vi~-DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG 257 (324)
T d2as0a2 213 KKGEKFDIVVL-DPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGG 257 (324)
T ss_dssp HTTCCEEEEEE-CCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEE
T ss_pred hccCCCCchhc-CCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 13358999997 3433322 24557777778899997
|
| >d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methyltransferase TTHA0928 species: Thermus thermophilus [TaxId: 274]
Probab=99.38 E-value=2.4e-13 Score=97.83 Aligned_cols=101 Identities=15% Similarity=0.060 Sum_probs=71.0
Q ss_pred CCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCC
Q 038343 21 FSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESG 100 (191)
Q Consensus 21 ~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~ 100 (191)
.++.+|||+|||+|.+++.+++.|+ +++++|.++.+++.+++|++.++.. .++.....+.... ...
T Consensus 40 ~~g~~vLDl~~G~G~~~i~a~~~ga-~vv~vD~~~~a~~~~~~N~~~~~~~------------~~v~~~~~d~~~~-~~~ 105 (171)
T d1ws6a1 40 PRRGRFLDPFAGSGAVGLEAASEGW-EAVLVEKDPEAVRLLKENVRRTGLG------------ARVVALPVEVFLP-EAK 105 (171)
T ss_dssp TTCCEEEEETCSSCHHHHHHHHTTC-EEEEECCCHHHHHHHHHHHHHHTCC------------CEEECSCHHHHHH-HHH
T ss_pred cCCCeEEEeccccchhhhhhhhccc-hhhhcccCHHHHhhhhHHHHhhccc------------cceeeeehhcccc-ccc
Confidence 3677999999999999999999988 8999999999999999999999865 2222222110000 001
Q ss_pred CCCCCCCEEEEcccccCCCChHHHHHHHH-HHhccCC
Q 038343 101 LSAFVPEIILGADILYDRSCFPDLVRILA-ILLNRRK 136 (191)
Q Consensus 101 ~~~~~fDvIi~~d~ly~~~~~~~ll~~l~-~ll~~~g 136 (191)
....+||+|++ |+-|.....+.+...+. .+|+++|
T Consensus 106 ~~~~~fD~If~-DPPY~~~~~~~l~~l~~~~ll~~~g 141 (171)
T d1ws6a1 106 AQGERFTVAFM-APPYAMDLAALFGELLASGLVEAGG 141 (171)
T ss_dssp HTTCCEEEEEE-CCCTTSCTTHHHHHHHHHTCEEEEE
T ss_pred ccCCccceeEE-ccccccCHHHHHHHHHHcCCcCCCe
Confidence 23357999987 77787665555444443 3677775
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.37 E-value=6.8e-13 Score=101.49 Aligned_cols=96 Identities=13% Similarity=0.182 Sum_probs=78.8
Q ss_pred CCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCCC
Q 038343 22 SNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESGL 101 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~~ 101 (191)
+|.+|||+|||+|.+++.+++.|+.+|+++|+++.+++.+++|++.|++. +++.+...|..+..
T Consensus 107 ~g~~VlD~~aG~G~~~l~~a~~~~~~V~avd~n~~a~~~~~~N~~~n~l~------------~~v~~~~~D~~~~~---- 170 (260)
T d2frna1 107 PDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVE------------DRMSAYNMDNRDFP---- 170 (260)
T ss_dssp TTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCT------------TTEEEECSCTTTCC----
T ss_pred CccEEEECcceEcHHHHHHHHhCCcEEEEecCCHHHHHHHHHHHHHhCCC------------ceEEEEEcchHHhc----
Confidence 68899999999999999999888779999999999999999999999976 56888888865543
Q ss_pred CCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCC
Q 038343 102 SAFVPEIILGADILYDRSCFPDLVRILAILLNRRKS 137 (191)
Q Consensus 102 ~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~ 137 (191)
..+.||.|++...- ....++....++|++||-
T Consensus 171 ~~~~~D~Ii~~~p~----~~~~~l~~a~~~l~~gG~ 202 (260)
T d2frna1 171 GENIADRILMGYVV----RTHEFIPKALSIAKDGAI 202 (260)
T ss_dssp CCSCEEEEEECCCS----SGGGGHHHHHHHEEEEEE
T ss_pred cCCCCCEEEECCCC----chHHHHHHHHhhcCCCCE
Confidence 23579999986443 344567777788999863
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=99.37 E-value=9.2e-13 Score=100.30 Aligned_cols=101 Identities=18% Similarity=0.136 Sum_probs=80.5
Q ss_pred CCCcEEEeCCCccHHHHHHHhcCC-CeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCC
Q 038343 22 SNKSCFEVGSGVGLVGICLAHVKA-SKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESG 100 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~g~-~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~ 100 (191)
+.++|||||||+|..++.+++... .++++.|. +.+++.+++++...+.. .++.+...|+.+..
T Consensus 80 ~~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~------------~rv~~~~~D~~~~~--- 143 (253)
T d1tw3a2 80 NVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLS------------DRVDVVEGDFFEPL--- 143 (253)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCT------------TTEEEEECCTTSCC---
T ss_pred cCCEEEEeCCCCCHHHHHHHHhcceeEEEEccC-HHHHHHHHHHHHHhhcc------------cchhhccccchhhc---
Confidence 457999999999999998777643 48999998 67999999998887754 46888888764332
Q ss_pred CCCCCCCEEEEcccccCCCCh--HHHHHHHHHHhccCCCCcc
Q 038343 101 LSAFVPEIILGADILYDRSCF--PDLVRILAILLNRRKSVSS 140 (191)
Q Consensus 101 ~~~~~fDvIi~~d~ly~~~~~--~~ll~~l~~ll~~~g~~~~ 140 (191)
..+||+|+++.++++.++. ..+++.+++.|+|||...+
T Consensus 144 --~~~~D~v~~~~vlh~~~d~~~~~~L~~~~~~LkPGG~l~i 183 (253)
T d1tw3a2 144 --PRKADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILI 183 (253)
T ss_dssp --SSCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEE
T ss_pred --ccchhheeeccccccCCchhhHHHHHHHHHhcCCCcEEEE
Confidence 2469999999999987554 4779999999999986543
|
| >d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase HI0767 species: Haemophilus influenzae [TaxId: 727]
Probab=99.36 E-value=1.1e-12 Score=95.28 Aligned_cols=104 Identities=14% Similarity=0.167 Sum_probs=78.1
Q ss_pred CCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCC
Q 038343 21 FSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESG 100 (191)
Q Consensus 21 ~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~ 100 (191)
..+.+||||.||||.+|+.+...|+++|+++|.+..+++.+++|++..+... ....+...+..+.....
T Consensus 42 ~~~~~vLDlFaGsG~~glEalSRGA~~v~fVE~~~~a~~~ik~Ni~~l~~~~-----------~~~~~~~~d~~~~l~~~ 110 (183)
T d2ifta1 42 IHQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSS-----------EQAEVINQSSLDFLKQP 110 (183)
T ss_dssp HTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCT-----------TTEEEECSCHHHHTTSC
T ss_pred cccceEeecccCccceeeeeeeecceeeEEeecccchhhhHhhHHhhhcccc-----------ccccccccccccccccc
Confidence 4678999999999999999999999999999999999999999998876542 12333433321111111
Q ss_pred CCCCCCCEEEEcccccCCCChHHHHHHHHH--HhccCC
Q 038343 101 LSAFVPEIILGADILYDRSCFPDLVRILAI--LLNRRK 136 (191)
Q Consensus 101 ~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~--ll~~~g 136 (191)
....+||+|++ |+-|.....+.++..+.. +|+++|
T Consensus 111 ~~~~~fDlIFl-DPPY~~~~~~~~l~~l~~~~~L~~~~ 147 (183)
T d2ifta1 111 QNQPHFDVVFL-DPPFHFNLAEQAISLLCENNWLKPNA 147 (183)
T ss_dssp CSSCCEEEEEE-CCCSSSCHHHHHHHHHHHTTCEEEEE
T ss_pred ccCCcccEEEe-chhHhhhhHHHHHHHHHHhCCcCCCc
Confidence 22347999976 888988888888888876 577774
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=99.35 E-value=2.1e-12 Score=99.01 Aligned_cols=95 Identities=20% Similarity=0.214 Sum_probs=72.4
Q ss_pred cHHHHHHHHhhCCCCCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCe
Q 038343 6 SSLLLSEFILSFPEIFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNV 85 (191)
Q Consensus 6 ~a~~L~~~l~~~~~~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~ 85 (191)
-+..|.+++..........+|+|+|||+|..++.+++....+|+++|+++.+++.+++|++.++.. .+
T Consensus 94 eTE~lv~~~~~~~~~~~~~~vld~g~GsG~i~~~la~~~~~~v~a~Dis~~Al~~A~~Na~~~~~~------------~~ 161 (271)
T d1nv8a_ 94 ETEELVELALELIRKYGIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVS------------DR 161 (271)
T ss_dssp THHHHHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHTTCT------------TS
T ss_pred hhhhhhhhhhhhhccccccEEEEeeeeeehhhhhhhhcccceeeechhhhhHHHHHHHHHHHcCCC------------ce
Confidence 355666666543322344589999999999999888776669999999999999999999999876 46
Q ss_pred eEEEeecCCCCCcCCCCCCCCCEEEEccc
Q 038343 86 VQCVHLPWESASESGLSAFVPEIILGADI 114 (191)
Q Consensus 86 i~~~~ldw~~~~~~~~~~~~fDvIi~~d~ 114 (191)
+.+...+|.+.... ..++||+|+++..
T Consensus 162 ~~i~~~~~~~~~~~--~~~~fDlIVsNPP 188 (271)
T d1nv8a_ 162 FFVRKGEFLEPFKE--KFASIEMILSNPP 188 (271)
T ss_dssp EEEEESSTTGGGGG--GTTTCCEEEECCC
T ss_pred eEEeeccccccccc--ccCcccEEEEccc
Confidence 77788888765322 2258999999644
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.34 E-value=5.5e-12 Score=96.31 Aligned_cols=104 Identities=16% Similarity=0.110 Sum_probs=79.6
Q ss_pred CCCCCCCCcEEEeCCCccHHHHHHHhc-CC-CeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCC
Q 038343 17 FPEIFSNKSCFEVGSGVGLVGICLAHV-KA-SKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWE 94 (191)
Q Consensus 17 ~~~~~~~~~VLElG~GtG~~~~~la~~-g~-~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~ 94 (191)
.....+|.+|||+|||+|.+++.+++. |. .+|+..|.++++++.+++|++...... ..++.+...|..
T Consensus 91 ~l~i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~----------~~nv~~~~~d~~ 160 (264)
T d1i9ga_ 91 EGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQP----------PDNWRLVVSDLA 160 (264)
T ss_dssp HTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSC----------CTTEEEECSCGG
T ss_pred HhCCCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCC----------CceEEEEecccc
Confidence 344568999999999999999988875 43 499999999999999999998653211 135666666543
Q ss_pred CCCcCCCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCC
Q 038343 95 SASESGLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSV 138 (191)
Q Consensus 95 ~~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~ 138 (191)
+ ..++++.||.|+. +.+++...+..+.++|||||..
T Consensus 161 ~---~~~~~~~fDaV~l-----dlp~P~~~l~~~~~~LkpGG~l 196 (264)
T d1i9ga_ 161 D---SELPDGSVDRAVL-----DMLAPWEVLDAVSRLLVAGGVL 196 (264)
T ss_dssp G---CCCCTTCEEEEEE-----ESSCGGGGHHHHHHHEEEEEEE
T ss_pred c---ccccCCCcceEEE-----ecCCHHHHHHHHHhccCCCCEE
Confidence 3 2345678999886 4567788999999999999753
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.34 E-value=9.7e-13 Score=96.41 Aligned_cols=73 Identities=15% Similarity=0.075 Sum_probs=58.7
Q ss_pred CCCCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCC
Q 038343 18 PEIFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESAS 97 (191)
Q Consensus 18 ~~~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~ 97 (191)
...+.|++|||+|||+|.+++.++..|+++|+++|+++.+++.+++|+. ++.+...|+.+.
T Consensus 44 ~~dl~Gk~VLDlGcGtG~l~i~a~~~ga~~V~~vDid~~a~~~ar~N~~------------------~~~~~~~D~~~l- 104 (197)
T d1ne2a_ 44 DGNIGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCG------------------GVNFMVADVSEI- 104 (197)
T ss_dssp HTSSBTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCT------------------TSEEEECCGGGC-
T ss_pred cCCCCCCEEEEeCCCCcHHHHHHHHcCCCcccccccCHHHHHHHHHccc------------------cccEEEEehhhc-
Confidence 3456899999999999999999999998899999999999999988753 244556665432
Q ss_pred cCCCCCCCCCEEEEccc
Q 038343 98 ESGLSAFVPEIILGADI 114 (191)
Q Consensus 98 ~~~~~~~~fDvIi~~d~ 114 (191)
+++||+|+++..
T Consensus 105 -----~~~fD~Vi~NPP 116 (197)
T d1ne2a_ 105 -----SGKYDTWIMNPP 116 (197)
T ss_dssp -----CCCEEEEEECCC
T ss_pred -----CCcceEEEeCcc
Confidence 257999998655
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.32 E-value=1.7e-13 Score=104.02 Aligned_cols=120 Identities=13% Similarity=0.053 Sum_probs=78.7
Q ss_pred CCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccc-----cccC-----------CC
Q 038343 20 IFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLL-----ESYE-----------DP 83 (191)
Q Consensus 20 ~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~-----~~~~-----------~~ 83 (191)
..++.+|||||||+|..++.++..+..+|+++|+++.+++.++++++.+......... .... ..
T Consensus 49 ~~~g~~vLDlGcG~G~~~~~~~~~~~~~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (257)
T d2a14a1 49 GLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLR 128 (257)
T ss_dssp SCCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCHhHHHHhccccCcEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHhccccchHHHHHHHHh
Confidence 3467799999999998888777777768999999999999999998766543211000 0000 00
Q ss_pred Cee-EEEeecCC-CCCcCCCCCCCCCEEEEcccccCCC----ChHHHHHHHHHHhccCCCCc
Q 038343 84 NVV-QCVHLPWE-SASESGLSAFVPEIILGADILYDRS----CFPDLVRILAILLNRRKSVS 139 (191)
Q Consensus 84 ~~i-~~~~ldw~-~~~~~~~~~~~fDvIi~~d~ly~~~----~~~~ll~~l~~ll~~~g~~~ 139 (191)
..+ .....+.. +........++||+|++..++++.. +...+++.+.++|||||...
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~LkpGG~li 190 (257)
T d2a14a1 129 AAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLV 190 (257)
T ss_dssp HHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEE
T ss_pred hhhhcccccccccccccccccCCcccEEeehhhHHHhcccHHHHHHHHHHHHhccCCCcEEE
Confidence 000 01111111 1111224557899999999987653 56678999999999998644
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=99.32 E-value=5.5e-12 Score=93.63 Aligned_cols=103 Identities=13% Similarity=0.027 Sum_probs=75.4
Q ss_pred hhCCCCCCCCcEEEeCCCccHHHHHHHhc-CC-CeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeec
Q 038343 15 LSFPEIFSNKSCFEVGSGVGLVGICLAHV-KA-SKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLP 92 (191)
Q Consensus 15 ~~~~~~~~~~~VLElG~GtG~~~~~la~~-g~-~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ld 92 (191)
.+.....++.+|||+|||+|..+..+++. +. .+|+++|+++.+++.+++|++..+.. ++.+...|
T Consensus 68 l~~l~l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~-------------n~~~~~~d 134 (213)
T d1dl5a1 68 MEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIE-------------NVIFVCGD 134 (213)
T ss_dssp HHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCC-------------SEEEEESC
T ss_pred HHhhhccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhccc-------------ccccccCc
Confidence 34444568899999999999999988774 32 38999999999999999999887754 34444444
Q ss_pred CCCCCcCCCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCc
Q 038343 93 WESASESGLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVS 139 (191)
Q Consensus 93 w~~~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~ 139 (191)
-.+. ....++||+|++...+++.. +.+.+.|+|||...
T Consensus 135 ~~~~---~~~~~~fD~I~~~~~~~~~p------~~l~~~LkpGG~lv 172 (213)
T d1dl5a1 135 GYYG---VPEFSPYDVIFVTVGVDEVP------ETWFTQLKEGGRVI 172 (213)
T ss_dssp GGGC---CGGGCCEEEEEECSBBSCCC------HHHHHHEEEEEEEE
T ss_pred hHHc---cccccchhhhhhhccHHHhH------HHHHHhcCCCcEEE
Confidence 2221 12345799999988877653 34667899998643
|
| >d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: (Uracil-5-)-methyltransferase domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=99.30 E-value=2.1e-11 Score=96.92 Aligned_cols=91 Identities=18% Similarity=0.134 Sum_probs=69.4
Q ss_pred HHHHHHHHhhCCCCCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCee
Q 038343 7 SLLLSEFILSFPEIFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVV 86 (191)
Q Consensus 7 a~~L~~~l~~~~~~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i 86 (191)
+..|.+.+.+.....++.+||||.||+|.+++.+++.+. +|+++|.++.+++.+++|++.|++. ++
T Consensus 197 ~e~l~~~v~~~~~~~~~~~vlDLycG~G~fsl~La~~~~-~V~gvE~~~~ai~~A~~na~~n~i~-------------n~ 262 (358)
T d1uwva2 197 NQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAA-SVVGVEGVPALVEKGQQNARLNGLQ-------------NV 262 (358)
T ss_dssp HHHHHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTTSS-EEEEEESCHHHHHHHHHHHHHTTCC-------------SE
T ss_pred hhHHHHHHHHhhccCCCceEEEecccccccchhcccccc-EEEeccCcHHHHHHHHHhHHhcccc-------------cc
Confidence 455666665544445677999999999999999998854 9999999999999999999999975 46
Q ss_pred EEEeecCCCCCcCC-CCCCCCCEEEE
Q 038343 87 QCVHLPWESASESG-LSAFVPEIILG 111 (191)
Q Consensus 87 ~~~~ldw~~~~~~~-~~~~~fDvIi~ 111 (191)
.+...+..+..... ....+||+||.
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~d~vil 288 (358)
T d1uwva2 263 TFYHENLEEDVTKQPWAKNGFDKVLL 288 (358)
T ss_dssp EEEECCTTSCCSSSGGGTTCCSEEEE
T ss_pred eeeecchhhhhhhhhhhhccCceEEe
Confidence 66766655443222 22357999887
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.30 E-value=6.3e-12 Score=94.13 Aligned_cols=120 Identities=15% Similarity=0.050 Sum_probs=83.5
Q ss_pred HHHHHhh---CCCCCCCCcEEEeCCCccHHHHHHHhc-CC-CeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCC
Q 038343 10 LSEFILS---FPEIFSNKSCFEVGSGVGLVGICLAHV-KA-SKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPN 84 (191)
Q Consensus 10 L~~~l~~---~~~~~~~~~VLElG~GtG~~~~~la~~-g~-~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~ 84 (191)
|+..|.. .....+|.+|||||||+|.....+++. |. .+|+++|+++.+++.++.+++..+
T Consensus 58 laa~i~~~l~~l~i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~~--------------- 122 (227)
T d1g8aa_ 58 LGAAIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERR--------------- 122 (227)
T ss_dssp HHHHHHTTCCCCCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCT---------------
T ss_pred HHHHHHccccccccCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhcC---------------
Confidence 4444443 234568999999999999998888874 43 489999999999999988765433
Q ss_pred eeEEEeecCCCCCcCCCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCccccccCC
Q 038343 85 VVQCVHLPWESASESGLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVSSSRKESS 146 (191)
Q Consensus 85 ~i~~~~ldw~~~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~~~~~~~~ 146 (191)
++.....+-............+|+|+. | +.++.....+++.+.++|+|+|...+...+++
T Consensus 123 ~~~~i~~d~~~~~~~~~~~~~vD~i~~-d-~~~~~~~~~~l~~~~~~LkpgG~lvi~~ka~~ 182 (227)
T d1g8aa_ 123 NIVPILGDATKPEEYRALVPKVDVIFE-D-VAQPTQAKILIDNAEVYLKRGGYGMIAVKSRS 182 (227)
T ss_dssp TEEEEECCTTCGGGGTTTCCCEEEEEE-C-CCSTTHHHHHHHHHHHHEEEEEEEEEEEEGGG
T ss_pred CceEEEEECCCcccccccccceEEEEE-E-ccccchHHHHHHHHHHhcccCCeEEEEEECCc
Confidence 233344443333221223346788776 3 55667788899999999999997666555554
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=99.28 E-value=1.9e-11 Score=93.53 Aligned_cols=106 Identities=16% Similarity=0.063 Sum_probs=79.9
Q ss_pred HHhhCCCCCCCCcEEEeCCCccHHHHHHHhc-CC-CeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEe
Q 038343 13 FILSFPEIFSNKSCFEVGSGVGLVGICLAHV-KA-SKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVH 90 (191)
Q Consensus 13 ~l~~~~~~~~~~~VLElG~GtG~~~~~la~~-g~-~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ 90 (191)
++....+..+|.+|||+|||+|.+++.+++. +. .+|+++|.++++++.+++|++..+.. ..+.+..
T Consensus 94 ~Ii~~l~i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~------------~~v~~~~ 161 (266)
T d1o54a_ 94 FIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLI------------ERVTIKV 161 (266)
T ss_dssp HHHHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCG------------GGEEEEC
T ss_pred HHHHhhCCCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccc------------cCcEEEe
Confidence 4444455668999999999999999988875 32 48999999999999999999988754 2444444
Q ss_pred ecCCCCCcCCCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCc
Q 038343 91 LPWESASESGLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVS 139 (191)
Q Consensus 91 ldw~~~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~ 139 (191)
.|... .+....||.|+. +.++...+++.+.++|||||...
T Consensus 162 ~d~~~----~~~~~~~D~V~~-----d~p~p~~~l~~~~~~LKpGG~lv 201 (266)
T d1o54a_ 162 RDISE----GFDEKDVDALFL-----DVPDPWNYIDKCWEALKGGGRFA 201 (266)
T ss_dssp CCGGG----CCSCCSEEEEEE-----CCSCGGGTHHHHHHHEEEEEEEE
T ss_pred ccccc----cccccceeeeEe-----cCCCHHHHHHHHHhhcCCCCEEE
Confidence 44221 233456888764 66788899999999999998544
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.28 E-value=4.7e-13 Score=102.54 Aligned_cols=121 Identities=14% Similarity=0.099 Sum_probs=75.6
Q ss_pred CCCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcc-cc----cc------------cC
Q 038343 19 EIFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTS-LL----ES------------YE 81 (191)
Q Consensus 19 ~~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~-~~----~~------------~~ 81 (191)
...++.+|||+|||+|..++..+..+..+|+++|+++.+++.+++++.......... .. +. ..
T Consensus 51 g~~~g~~vLDiGcG~g~~~~~~~~~~~~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (263)
T d2g72a1 51 GEVSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQL 130 (263)
T ss_dssp SCSCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHH
T ss_pred CCCCCcEEEEeccCCCHHHHHHhcccCCeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHHHh
Confidence 345788999999999987765554445599999999999999998765432111100 00 00 00
Q ss_pred CCCeeEEEeecCCCCC---cCCCCCCCCCEEEEcccccCCC----ChHHHHHHHHHHhccCCCCc
Q 038343 82 DPNVVQCVHLPWESAS---ESGLSAFVPEIILGADILYDRS----CFPDLVRILAILLNRRKSVS 139 (191)
Q Consensus 82 ~~~~i~~~~ldw~~~~---~~~~~~~~fDvIi~~d~ly~~~----~~~~ll~~l~~ll~~~g~~~ 139 (191)
......+...|..... ......++||+|++.-++++.. ++..+++.+.++|||||...
T Consensus 131 ~~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkPGG~li 195 (263)
T d2g72a1 131 RARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLL 195 (263)
T ss_dssp HHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEE
T ss_pred hhhhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCCCCEEE
Confidence 0001122223332221 1123345799999998887543 56788999999999998543
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.27 E-value=8.7e-12 Score=97.06 Aligned_cols=106 Identities=15% Similarity=0.116 Sum_probs=79.1
Q ss_pred CCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCC-
Q 038343 22 SNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESG- 100 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~- 100 (191)
++++||||+||||.+++.+++.|+ +|+.+|.++.+++.+++|++.|++.. .++++...|..+.....
T Consensus 132 ~~~rVLdlf~~tG~~sl~aa~~GA-~V~~VD~s~~al~~a~~N~~ln~~~~-----------~~~~~i~~D~~~~l~~~~ 199 (309)
T d2igta1 132 RPLKVLNLFGYTGVASLVAAAAGA-EVTHVDASKKAIGWAKENQVLAGLEQ-----------APIRWICEDAMKFIQREE 199 (309)
T ss_dssp SCCEEEEETCTTCHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHHHHTCTT-----------SCEEEECSCHHHHHHHHH
T ss_pred CCCeEEEecCCCcHHHHHHHhCCC-eEEEEeChHHHHHHHHHhhhhhcccC-----------CcEEEEeCCHHHhHHHHh
Confidence 578999999999999999999988 89999999999999999999998763 24666666543221111
Q ss_pred CCCCCCCEEEEcccccCC----------CChHHHHHHHHHHhccCCCCc
Q 038343 101 LSAFVPEIILGADILYDR----------SCFPDLVRILAILLNRRKSVS 139 (191)
Q Consensus 101 ~~~~~fDvIi~~d~ly~~----------~~~~~ll~~l~~ll~~~g~~~ 139 (191)
....+||+||+-..-|.. .+...++..+..+|+|+|...
T Consensus 200 ~~~~~fD~IilDPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~l 248 (309)
T d2igta1 200 RRGSTYDIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGL 248 (309)
T ss_dssp HHTCCBSEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEE
T ss_pred hcCCCCCEEEECCCcccccccchhHHHHHHHHHHHHHHHHhcCCCCCEE
Confidence 123589999984433311 235667788889999997543
|
| >d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Methyltransferase 10 domain domain: Methyltransferase 10 domain containing protein METT10D species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.25 E-value=2.2e-11 Score=92.45 Aligned_cols=85 Identities=15% Similarity=0.263 Sum_probs=65.3
Q ss_pred CCCcEEEeCCCccHHHHHHHhc-CCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCC
Q 038343 22 SNKSCFEVGSGVGLVGICLAHV-KASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESG 100 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~-g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~ 100 (191)
+..++||+|||+|.+++.+++. ...+++++|+++++++.+++|++.|++. .++.+...+|.......
T Consensus 61 ~~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~N~~~n~l~------------~~~~~~~~~~~~~~~~~ 128 (250)
T d2h00a1 61 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLS------------DLIKVVKVPQKTLLMDA 128 (250)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCT------------TTEEEEECCTTCSSTTT
T ss_pred ccceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHHHHHHhCCC------------cceeeeeeccHHhhhhh
Confidence 4458999999999999977764 2349999999999999999999999876 56777777765543221
Q ss_pred ---CCCCCCCEEEEcccccCC
Q 038343 101 ---LSAFVPEIILGADILYDR 118 (191)
Q Consensus 101 ---~~~~~fDvIi~~d~ly~~ 118 (191)
...++||+|+++..+|..
T Consensus 129 ~~~~~~~~fD~ivsNPPY~~~ 149 (250)
T d2h00a1 129 LKEESEIIYDFCMCNPPFFAN 149 (250)
T ss_dssp STTCCSCCBSEEEECCCCC--
T ss_pred hhhcccCceeEEEecCccccc
Confidence 234579999999888754
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=99.24 E-value=2.4e-11 Score=89.53 Aligned_cols=102 Identities=8% Similarity=-0.005 Sum_probs=78.2
Q ss_pred CcEEEeCCCccHHHHHHHhcCC-CeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCCCC
Q 038343 24 KSCFEVGSGVGLVGICLAHVKA-SKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESGLS 102 (191)
Q Consensus 24 ~~VLElG~GtG~~~~~la~~g~-~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~~~ 102 (191)
..|||||||+|...+.+|+..+ ..++++|+++.++..+.+++..+++. ++.+...|..... ..++
T Consensus 31 PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~l~-------------Nv~~~~~Da~~l~-~~~~ 96 (204)
T d2fcaa1 31 PIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQ-------------NVKLLNIDADTLT-DVFE 96 (204)
T ss_dssp CEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCS-------------SEEEECCCGGGHH-HHCC
T ss_pred ceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHhcc-------------Cchhcccchhhhh-cccC
Confidence 3699999999988887777643 48999999999999999999888764 5777777654322 2356
Q ss_pred CCCCCEEEEcccccCCCC--------hHHHHHHHHHHhccCCCCc
Q 038343 103 AFVPEIILGADILYDRSC--------FPDLVRILAILLNRRKSVS 139 (191)
Q Consensus 103 ~~~fDvIi~~d~ly~~~~--------~~~ll~~l~~ll~~~g~~~ 139 (191)
++++|.|+..-+..++.. ...+++.++++|||||...
T Consensus 97 ~~~~d~v~i~fp~P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~ 141 (204)
T d2fcaa1 97 PGEVKRVYLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIH 141 (204)
T ss_dssp TTSCCEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEE
T ss_pred chhhhccccccccccchhhhcchhhhHHHHHHHHHHhCCCCcEEE
Confidence 678999887555544443 2589999999999998644
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=99.24 E-value=3.4e-12 Score=100.18 Aligned_cols=105 Identities=17% Similarity=0.057 Sum_probs=77.8
Q ss_pred CCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcC-C
Q 038343 22 SNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASES-G 100 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~-~ 100 (191)
+|++|||++||+|..++.++..|+.+|+++|.++.+++.+++|++.|++.. .++++...|..+.... .
T Consensus 144 ~g~~VLdlf~~~G~~sl~aa~~ga~~V~~vD~s~~a~~~a~~N~~~n~l~~-----------~~~~~i~~d~~~~l~~~~ 212 (317)
T d2b78a2 144 AGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDM-----------ANHQLVVMDVFDYFKYAR 212 (317)
T ss_dssp BTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCC-----------TTEEEEESCHHHHHHHHH
T ss_pred CCCceeecCCCCcHHHHHHHhCCCceEEEecCCHHHHHHHHHHHHHhcccC-----------cceEEEEccHHHHHHHHH
Confidence 688999999999999999999899899999999999999999999999753 2456666553221110 0
Q ss_pred CCCCCCCEEEEcccccCC---------CChHHHHHHHHHHhccCCC
Q 038343 101 LSAFVPEIILGADILYDR---------SCFPDLVRILAILLNRRKS 137 (191)
Q Consensus 101 ~~~~~fDvIi~~d~ly~~---------~~~~~ll~~l~~ll~~~g~ 137 (191)
....+||+||+-..-+.. .++..+++...++|+|||.
T Consensus 213 ~~~~~fD~Ii~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~ 258 (317)
T d2b78a2 213 RHHLTYDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGL 258 (317)
T ss_dssp HTTCCEEEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEE
T ss_pred hhcCCCCEEEEcChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCE
Confidence 123589999984332211 1255688888899999973
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=99.23 E-value=2.3e-12 Score=101.21 Aligned_cols=103 Identities=16% Similarity=0.088 Sum_probs=74.5
Q ss_pred CCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcC-
Q 038343 21 FSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASES- 99 (191)
Q Consensus 21 ~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~- 99 (191)
.+|++|||++||+|..++.+++. +.+|+++|.++.+++.+++|++.|++. ++.+...|..+....
T Consensus 144 ~~g~rVLDl~~gtG~~s~~~a~g-~~~V~~vD~s~~al~~a~~n~~~ngl~-------------~~~~i~~d~~~~~~~~ 209 (318)
T d1wxxa2 144 FRGERALDVFSYAGGFALHLALG-FREVVAVDSSAEALRRAEENARLNGLG-------------NVRVLEANAFDLLRRL 209 (318)
T ss_dssp CCEEEEEEETCTTTHHHHHHHHH-EEEEEEEESCHHHHHHHHHHHHHTTCT-------------TEEEEESCHHHHHHHH
T ss_pred hCCCeeeccCCCCcHHHHHHHhc-CCcEEeecchHHHHHHHHHHHHHcCCC-------------CcceeeccHHHHhhhh
Confidence 36889999999999999988764 559999999999999999999999964 355566554322110
Q ss_pred CCCCCCCCEEEEcccccCC--CC-------hHHHHHHHHHHhccCCC
Q 038343 100 GLSAFVPEIILGADILYDR--SC-------FPDLVRILAILLNRRKS 137 (191)
Q Consensus 100 ~~~~~~fDvIi~~d~ly~~--~~-------~~~ll~~l~~ll~~~g~ 137 (191)
.....+||+|++...-+.. .. ...++....++|+|||.
T Consensus 210 ~~~~~~fD~Vi~DpP~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~ 256 (318)
T d1wxxa2 210 EKEGERFDLVVLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGI 256 (318)
T ss_dssp HHTTCCEEEEEECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEE
T ss_pred HhhhcCCCEEEEcCCccccchHHHHHHHHHHHHHHHHHHHHcCCCCE
Confidence 1133589999984433321 12 34577788888999973
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=99.22 E-value=3.9e-11 Score=91.35 Aligned_cols=101 Identities=15% Similarity=0.090 Sum_probs=79.4
Q ss_pred CCCcEEEeCCCccHHHHHHHhcCC-CeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCC
Q 038343 22 SNKSCFEVGSGVGLVGICLAHVKA-SKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESG 100 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~g~-~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~ 100 (191)
...+|||||||+|..+..+++..+ .++++.|+ +++++.++++++..+.. .++.+...+..+..
T Consensus 81 ~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~~~~~~~------------~ri~~~~~d~~~~~--- 144 (256)
T d1qzza2 81 AVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLA------------DRVTVAEGDFFKPL--- 144 (256)
T ss_dssp TCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCT------------TTEEEEECCTTSCC---
T ss_pred cCCEEEEECCCCCHHHHHHHHhhcCcEEEEecC-hHHHHHHHHHHhhcCCc------------ceeeeeeeeccccc---
Confidence 446899999999999998777643 38999998 88999999998887754 46777777654321
Q ss_pred CCCCCCCEEEEcccccCCCCh--HHHHHHHHHHhccCCCCcc
Q 038343 101 LSAFVPEIILGADILYDRSCF--PDLVRILAILLNRRKSVSS 140 (191)
Q Consensus 101 ~~~~~fDvIi~~d~ly~~~~~--~~ll~~l~~ll~~~g~~~~ 140 (191)
..+||+|++..++++.++. ..+|+.+++.|+|||+..+
T Consensus 145 --p~~~D~v~~~~vLh~~~d~~~~~lL~~i~~~LkpgG~llI 184 (256)
T d1qzza2 145 --PVTADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLV 184 (256)
T ss_dssp --SCCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred --cccchhhhccccccccCcHHHHHHHHHHHhhcCCcceeEE
Confidence 2469999999999977543 5679999999999986543
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=99.22 E-value=2.1e-11 Score=90.95 Aligned_cols=104 Identities=12% Similarity=0.031 Sum_probs=74.8
Q ss_pred HHHhhCCCCCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEee
Q 038343 12 EFILSFPEIFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHL 91 (191)
Q Consensus 12 ~~l~~~~~~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~l 91 (191)
..+.+.....++.+|||+|||+|..+..+++++. +|+++|.++.+++.++++.... .++.+...
T Consensus 60 a~ml~~L~l~~g~~VLdIG~GsGy~ta~La~l~~-~V~aiE~~~~~~~~A~~~~~~~---------------~nv~~~~~ 123 (224)
T d1vbfa_ 60 IFMLDELDLHKGQKVLEIGTGIGYYTALIAEIVD-KVVSVEINEKMYNYASKLLSYY---------------NNIKLILG 123 (224)
T ss_dssp HHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHSS-EEEEEESCHHHHHHHHHHHTTC---------------SSEEEEES
T ss_pred HHHHHHhhhcccceEEEecCCCCHHHHHHHHHhc-ccccccccHHHHHHHHHHHhcc---------------cccccccC
Confidence 3444444566888999999999999999999865 9999999999999998876532 24666665
Q ss_pred cCCCCCcCCCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCcc
Q 038343 92 PWESASESGLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVSS 140 (191)
Q Consensus 92 dw~~~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~~ 140 (191)
|-.... ....+||.|++...+.+. ...+.+.|++||+...
T Consensus 124 d~~~g~---~~~~pfD~Iiv~~a~~~i------p~~l~~qLk~GGrLV~ 163 (224)
T d1vbfa_ 124 DGTLGY---EEEKPYDRVVVWATAPTL------LCKPYEQLKEGGIMIL 163 (224)
T ss_dssp CGGGCC---GGGCCEEEEEESSBBSSC------CHHHHHTEEEEEEEEE
T ss_pred chhhcc---hhhhhHHHHHhhcchhhh------hHHHHHhcCCCCEEEE
Confidence 532221 123579999987665443 2456678999987543
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=99.21 E-value=1.7e-11 Score=94.01 Aligned_cols=92 Identities=12% Similarity=0.065 Sum_probs=69.2
Q ss_pred CCCcEEEeCCCccHHHHHHHhcCC-CeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCC
Q 038343 22 SNKSCFEVGSGVGLVGICLAHVKA-SKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESG 100 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~g~-~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~ 100 (191)
++.+|||+|||+|..+..+++.+. .+++++|+++.+++.++++. .++.+...|..+. .
T Consensus 84 ~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~~------------------~~~~~~~~d~~~l---~ 142 (268)
T d1p91a_ 84 KATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY------------------PQVTFCVASSHRL---P 142 (268)
T ss_dssp TCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC------------------TTSEEEECCTTSC---S
T ss_pred CCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhccc------------------ccccceeeehhhc---c
Confidence 567999999999998888877643 38999999999998887542 2355666665543 2
Q ss_pred CCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCccc
Q 038343 101 LSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVSSS 141 (191)
Q Consensus 101 ~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~~~ 141 (191)
+.+++||+|++...+.+ ++.+.++|||||.....
T Consensus 143 ~~~~sfD~v~~~~~~~~-------~~e~~rvLkpgG~l~~~ 176 (268)
T d1p91a_ 143 FSDTSMDAIIRIYAPCK-------AEELARVVKPGGWVITA 176 (268)
T ss_dssp BCTTCEEEEEEESCCCC-------HHHHHHHEEEEEEEEEE
T ss_pred CCCCCEEEEeecCCHHH-------HHHHHHHhCCCcEEEEE
Confidence 45678999998765543 56789999999865543
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.18 E-value=1.4e-11 Score=92.03 Aligned_cols=106 Identities=16% Similarity=0.098 Sum_probs=74.9
Q ss_pred CCCCCCcEEEeCCCccHHHHHHHhc-C-CCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCC
Q 038343 19 EIFSNKSCFEVGSGVGLVGICLAHV-K-ASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESA 96 (191)
Q Consensus 19 ~~~~~~~VLElG~GtG~~~~~la~~-g-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~ 96 (191)
+..+|.+|||+|||+|..+..++++ + ..+|+++|.++++++.+++|++..+..... ..++.+...|-...
T Consensus 73 ~l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~--------~~~~~~~~gD~~~~ 144 (224)
T d1i1na_ 73 QLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLS--------SGRVQLVVGDGRMG 144 (224)
T ss_dssp TSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHH--------TSSEEEEESCGGGC
T ss_pred ccCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCccccc--------ccceEEEEeecccc
Confidence 4557889999999999888877764 3 248999999999999999999876543100 02355555443222
Q ss_pred CcCCCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCccc
Q 038343 97 SESGLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVSSS 141 (191)
Q Consensus 97 ~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~~~ 141 (191)
. ....+||+|++...+.+.. ..+.+.|+|||...+.
T Consensus 145 ~---~~~~~fD~I~~~~~~~~ip------~~l~~~LkpGG~LV~p 180 (224)
T d1i1na_ 145 Y---AEEAPYDAIHVGAAAPVVP------QALIDQLKPGGRLILP 180 (224)
T ss_dssp C---GGGCCEEEEEECSBBSSCC------HHHHHTEEEEEEEEEE
T ss_pred c---chhhhhhhhhhhcchhhcC------HHHHhhcCCCcEEEEE
Confidence 1 2345899999987776543 3567889999876543
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.18 E-value=2.9e-10 Score=83.56 Aligned_cols=100 Identities=10% Similarity=-0.027 Sum_probs=77.5
Q ss_pred cEEEeCCCccHHHHHHHhcCC-CeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCCCCC
Q 038343 25 SCFEVGSGVGLVGICLAHVKA-SKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESGLSA 103 (191)
Q Consensus 25 ~VLElG~GtG~~~~~la~~g~-~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~~~~ 103 (191)
.|||||||+|...+.+|+..+ ..++++|+++.++..+.+++..+++. ++.+...|..... ..+++
T Consensus 34 lvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~l~-------------Ni~~~~~da~~l~-~~~~~ 99 (204)
T d1yzha1 34 IHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVP-------------NIKLLWVDGSDLT-DYFED 99 (204)
T ss_dssp EEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCS-------------SEEEEECCSSCGG-GTSCT
T ss_pred eEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhhccc-------------cceeeecCHHHHh-hhccC
Confidence 699999999988887777643 48999999999999999988888764 5788888866543 34567
Q ss_pred CCCCEEEEcccccCCCC--------hHHHHHHHHHHhccCCCC
Q 038343 104 FVPEIILGADILYDRSC--------FPDLVRILAILLNRRKSV 138 (191)
Q Consensus 104 ~~fDvIi~~d~ly~~~~--------~~~ll~~l~~ll~~~g~~ 138 (191)
.++|.|+..-+-.++.. ...+++.+.++|+|||..
T Consensus 100 ~~~~~i~i~fPdPw~K~~h~krRl~~~~~l~~~~~~LkpgG~l 142 (204)
T d1yzha1 100 GEIDRLYLNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEI 142 (204)
T ss_dssp TCCSEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEE
T ss_pred CceehhcccccccccchhhhhhhhhHHHHHHHHHHhCCCCcEE
Confidence 78999986433333322 378999999999999853
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.13 E-value=2e-10 Score=90.10 Aligned_cols=113 Identities=16% Similarity=0.105 Sum_probs=76.6
Q ss_pred CCCCCCCcEEEeCCCccHHHHHHHhc-CC-CeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCC
Q 038343 18 PEIFSNKSCFEVGSGVGLVGICLAHV-KA-SKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWES 95 (191)
Q Consensus 18 ~~~~~~~~VLElG~GtG~~~~~la~~-g~-~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~ 95 (191)
....+|.+|||+|||+|.+++.+|+. |. .+|++.|+++++++.+++|++..+..... ........++.+...|...
T Consensus 94 l~i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~--~~~~~~~~nv~~~~~di~~ 171 (324)
T d2b25a1 94 MDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKL--SHVEEWPDNVDFIHKDISG 171 (324)
T ss_dssp HTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTT--TCSSCCCCCEEEEESCTTC
T ss_pred hCCCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhh--hhhhccccceeEEecchhh
Confidence 34558999999999999999988874 43 38999999999999999999875421000 0001123567777777654
Q ss_pred CCcCCCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCC
Q 038343 96 ASESGLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSV 138 (191)
Q Consensus 96 ~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~ 138 (191)
... .+....||.|+. | .+++...+..+.++|||||..
T Consensus 172 ~~~-~~~~~~fD~V~L-D----~p~P~~~l~~~~~~LKpGG~l 208 (324)
T d2b25a1 172 ATE-DIKSLTFDAVAL-D----MLNPHVTLPVFYPHLKHGGVC 208 (324)
T ss_dssp CC--------EEEEEE-C----SSSTTTTHHHHGGGEEEEEEE
T ss_pred ccc-ccCCCCcceEee-c----CcCHHHHHHHHHHhccCCCEE
Confidence 422 234467999886 4 344556889999999999753
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=99.12 E-value=1.1e-10 Score=86.48 Aligned_cols=104 Identities=14% Similarity=0.080 Sum_probs=77.7
Q ss_pred HhhCCCCCCCCcEEEeCCCccHHHHHHHhc-CCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeec
Q 038343 14 ILSFPEIFSNKSCFEVGSGVGLVGICLAHV-KASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLP 92 (191)
Q Consensus 14 l~~~~~~~~~~~VLElG~GtG~~~~~la~~-g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ld 92 (191)
+.+..+..++.+|||+|||||..+..++++ | .+|+++|.++.+++.+++|++..+.. ++.+...|
T Consensus 70 ml~~L~l~~g~~VLeIGsGsGY~taila~l~g-~~V~~ie~~~~l~~~a~~~l~~~g~~-------------nv~~~~gd 135 (215)
T d1jg1a_ 70 MLEIANLKPGMNILEVGTGSGWNAALISEIVK-TDVYTIERIPELVEFAKRNLERAGVK-------------NVHVILGD 135 (215)
T ss_dssp HHHHHTCCTTCCEEEECCTTSHHHHHHHHHHC-SCEEEEESCHHHHHHHHHHHHHTTCC-------------SEEEEESC
T ss_pred HHHhhccCccceEEEecCCCChhHHHHHHhhC-ceeEEEeccHHHHHHHHHHHHHcCCc-------------eeEEEECc
Confidence 334445567889999999999998888876 5 37999999999999999999988754 57777776
Q ss_pred CCCCCcCCCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCcc
Q 038343 93 WESASESGLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVSS 140 (191)
Q Consensus 93 w~~~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~~ 140 (191)
..... ....+||.|+....+...+ + .+...|++||+...
T Consensus 136 ~~~g~---~~~~pfD~Iiv~~a~~~ip--~----~l~~qL~~gGrLv~ 174 (215)
T d1jg1a_ 136 GSKGF---PPKAPYDVIIVTAGAPKIP--E----PLIEQLKIGGKLII 174 (215)
T ss_dssp GGGCC---GGGCCEEEEEECSBBSSCC--H----HHHHTEEEEEEEEE
T ss_pred cccCC---cccCcceeEEeecccccCC--H----HHHHhcCCCCEEEE
Confidence 54332 2346899999977776443 3 35567899986543
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.99 E-value=2.1e-10 Score=90.25 Aligned_cols=118 Identities=8% Similarity=-0.066 Sum_probs=79.3
Q ss_pred hCCCCCCCCcEEEeCCCccHHHHHHHh-cCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCC
Q 038343 16 SFPEIFSNKSCFEVGSGVGLVGICLAH-VKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWE 94 (191)
Q Consensus 16 ~~~~~~~~~~VLElG~GtG~~~~~la~-~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~ 94 (191)
+.....++.+|||||||+|.+.+.+++ .++.+++++|+++.+++.++++.+..+.... .......++.+...|..
T Consensus 145 ~~~~l~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~----~~g~~~~~i~~~~gd~~ 220 (328)
T d1nw3a_ 145 DEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMK----WYGKKHAEYTLERGDFL 220 (328)
T ss_dssp HHSCCCTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHH----HHTCCCCCEEEEECCTT
T ss_pred HHcCCCCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhh----hccccCCceEEEECccc
Confidence 334455788999999999999987665 5667899999999999999887655321100 00001146788888865
Q ss_pred CCCcCCCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCc
Q 038343 95 SASESGLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVS 139 (191)
Q Consensus 95 ~~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~ 139 (191)
+..... .....|+|+++... +.++....++.+.+.|||||+..
T Consensus 221 ~~~~~~-~~~~advi~~~~~~-f~~~~~~~l~e~~r~LKpGg~iv 263 (328)
T d1nw3a_ 221 SEEWRE-RIANTSVIFVNNFA-FGPEVDHQLKERFANMKEGGRIV 263 (328)
T ss_dssp SHHHHH-HHHHCSEEEECCTT-TCHHHHHHHHHHHTTCCTTCEEE
T ss_pred cccccc-ccCcceEEEEccee-cchHHHHHHHHHHHhCCCCcEEE
Confidence 432110 00135888876544 45567788889999999998754
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.93 E-value=1.2e-09 Score=81.26 Aligned_cols=105 Identities=14% Similarity=0.097 Sum_probs=72.8
Q ss_pred CCCCCCcEEEeCCCccHHHHHHHhc----CC---CeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEee
Q 038343 19 EIFSNKSCFEVGSGVGLVGICLAHV----KA---SKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHL 91 (191)
Q Consensus 19 ~~~~~~~VLElG~GtG~~~~~la~~----g~---~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~l 91 (191)
+..++.+|||+|||||..+..++++ |. .+|+++|.++++++.+++|+..+..... ...++.+...
T Consensus 77 ~l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~--------~~~nv~~~~~ 148 (223)
T d1r18a_ 77 HLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSML--------DSGQLLIVEG 148 (223)
T ss_dssp TCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHH--------HHTSEEEEES
T ss_pred ccCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhc--------CccEEEEEec
Confidence 5568889999999999888877765 21 3799999999999999998765432100 0024666666
Q ss_pred cCCCCCcCCCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCcc
Q 038343 92 PWESASESGLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVSS 140 (191)
Q Consensus 92 dw~~~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~~ 140 (191)
|-.+.. .+..+||.|+..-.+.+.+ ..+.+.|++||...+
T Consensus 149 d~~~~~---~~~~~fD~Iiv~~a~~~~p------~~l~~~Lk~gG~lV~ 188 (223)
T d1r18a_ 149 DGRKGY---PPNAPYNAIHVGAAAPDTP------TELINQLASGGRLIV 188 (223)
T ss_dssp CGGGCC---GGGCSEEEEEECSCBSSCC------HHHHHTEEEEEEEEE
T ss_pred cccccc---ccccceeeEEEEeechhch------HHHHHhcCCCcEEEE
Confidence 533221 2335899999977765443 356788999986543
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.90 E-value=1.8e-09 Score=86.84 Aligned_cols=117 Identities=10% Similarity=-0.056 Sum_probs=73.6
Q ss_pred CCCCCCCcEEEeCCCccHHHHHHHh-cCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEE-EeecCCC
Q 038343 18 PEIFSNKSCFEVGSGVGLVGICLAH-VKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQC-VHLPWES 95 (191)
Q Consensus 18 ~~~~~~~~VLElG~GtG~~~~~la~-~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~-~~ldw~~ 95 (191)
....++.+|||||||+|.+.+.+|. .|+++|+++|+++.+++.++++++..+...... ......+.. ...+...
T Consensus 212 l~Lkpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~----g~~~~~~~~~~~~~f~~ 287 (406)
T d1u2za_ 212 CQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLY----GMRLNNVEFSLKKSFVD 287 (406)
T ss_dssp TTCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHT----TBCCCCEEEEESSCSTT
T ss_pred hCCCCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhh----ccccccceeeeeechhh
Confidence 3456788999999999988886665 576789999999999999999887654211000 000011111 1111111
Q ss_pred CCcCCCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCc
Q 038343 96 ASESGLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVS 139 (191)
Q Consensus 96 ~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~ 139 (191)
.......-..+|+|++.. +.+.++....++.+.+.|||||+..
T Consensus 288 ~~~~d~~~~~adVV~inn-~~f~~~l~~~L~ei~r~LKPGGrIV 330 (406)
T d1u2za_ 288 NNRVAELIPQCDVILVNN-FLFDEDLNKKVEKILQTAKVGCKII 330 (406)
T ss_dssp CHHHHHHGGGCSEEEECC-TTCCHHHHHHHHHHHTTCCTTCEEE
T ss_pred ccccccccccceEEEEec-ccCchHHHHHHHHHHHhcCCCcEEE
Confidence 100000112578888765 4456678888999999999998644
|
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.80 E-value=3e-09 Score=78.80 Aligned_cols=102 Identities=14% Similarity=0.071 Sum_probs=77.5
Q ss_pred CCCCcEEEeCCCccHHHHHHHhc-C-CCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCc
Q 038343 21 FSNKSCFEVGSGVGLVGICLAHV-K-ASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASE 98 (191)
Q Consensus 21 ~~~~~VLElG~GtG~~~~~la~~-g-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~ 98 (191)
.+.++|||+|+|+|..++.++.. . ..+++.+|.+++..+.++++++..+.. .++++...+..+..+
T Consensus 58 ~~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~------------~~i~~~~Gda~e~l~ 125 (219)
T d2avda1 58 IQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAE------------HKIDLRLKPALETLD 125 (219)
T ss_dssp TTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCT------------TTEEEEESCHHHHHH
T ss_pred cCCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCcc------------ceEEEEEeehhhcch
Confidence 35679999999999999988764 2 249999999999999999999998865 457777665432211
Q ss_pred C---CCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCC
Q 038343 99 S---GLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKS 137 (191)
Q Consensus 99 ~---~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~ 137 (191)
. ....++||+|+. | .+.......++.+.++|+|||-
T Consensus 126 ~~~~~~~~~~fD~ifi-D--~dk~~y~~~~~~~~~lL~~GGv 164 (219)
T d2avda1 126 ELLAAGEAGTFDVAVV-D--ADKENCSAYYERCLQLLRPGGI 164 (219)
T ss_dssp HHHHTTCTTCEEEEEE-C--SCSTTHHHHHHHHHHHEEEEEE
T ss_pred hhhhhcccCCccEEEE-e--CCHHHHHHHHHHHHHHhcCCcE
Confidence 1 123468999987 3 3556778888999999999973
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.80 E-value=1.3e-09 Score=80.58 Aligned_cols=100 Identities=13% Similarity=0.109 Sum_probs=70.2
Q ss_pred CCCcEEEeCCCccHHHHHHHhc-C-CCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcC
Q 038343 22 SNKSCFEVGSGVGLVGICLAHV-K-ASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASES 99 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~-g-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~ 99 (191)
+.++|||+|||+|..++.+++. + ..+|+.+|.+++.++.++++++..+.. .++++...+..+....
T Consensus 56 kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~------------~~i~l~~Gd~~e~l~~ 123 (214)
T d2cl5a1 56 SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQ------------DKVTILNGASQDLIPQ 123 (214)
T ss_dssp CCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCG------------GGEEEEESCHHHHGGG
T ss_pred CCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCC------------ccceeeeccccccccc
Confidence 4569999999999999988864 2 249999999999999999999988865 4677777665433211
Q ss_pred ---CCCCCCCCEEEEcccccCCCChHH--HHHHHHHHhccCC
Q 038343 100 ---GLSAFVPEIILGADILYDRSCFPD--LVRILAILLNRRK 136 (191)
Q Consensus 100 ---~~~~~~fDvIi~~d~ly~~~~~~~--ll~~l~~ll~~~g 136 (191)
.....+||+|+. | .+...... .+....++|+|||
T Consensus 124 l~~~~~~~~~D~ifi-D--~~~~~~~~~~~l~~~~~lLkpGG 162 (214)
T d2cl5a1 124 LKKKYDVDTLDMVFL-D--HWKDRYLPDTLLLEKCGLLRKGT 162 (214)
T ss_dssp HHHHSCCCCEEEEEE-C--SCGGGHHHHHHHHHHTTCEEEEE
T ss_pred hhhcccccccceeee-c--ccccccccHHHHHHHhCccCCCc
Confidence 123357999986 3 22222222 2444456799986
|
| >d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Caffeoyl-CoA O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.63 E-value=1.4e-08 Score=75.48 Aligned_cols=101 Identities=13% Similarity=0.083 Sum_probs=77.7
Q ss_pred CCCcEEEeCCCccHHHHHHHh-cC-CCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcC
Q 038343 22 SNKSCFEVGSGVGLVGICLAH-VK-ASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASES 99 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~-~g-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~ 99 (191)
+.++|||+|+++|..++.++. ++ ..+++.+|.+++..+.++++++..+.. .++.+...+..+..+.
T Consensus 59 ~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~------------~~i~~~~g~a~~~L~~ 126 (227)
T d1susa1 59 NAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVD------------HKIDFREGPALPVLDE 126 (227)
T ss_dssp TCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCG------------GGEEEEESCHHHHHHH
T ss_pred CCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccc------------cceeeeehHHHHHHHH
Confidence 566999999999999998875 32 249999999999999999999998865 4677777665433211
Q ss_pred ----CCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCC
Q 038343 100 ----GLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKS 137 (191)
Q Consensus 100 ----~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~ 137 (191)
....++||+|+. |. +.......++.+.++|+|||-
T Consensus 127 l~~~~~~~~~fD~iFi-Da--~k~~y~~~~e~~~~ll~~gGi 165 (227)
T d1susa1 127 MIKDEKNHGSYDFIFV-DA--DKDNYLNYHKRLIDLVKVGGV 165 (227)
T ss_dssp HHHCGGGTTCBSEEEE-CS--CSTTHHHHHHHHHHHBCTTCC
T ss_pred HHhccccCCceeEEEe-cc--chhhhHHHHHHHHhhcCCCcE
Confidence 112357999997 43 556788889999999999974
|
| >d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Escherichia coli [TaxId: 562]
Probab=98.62 E-value=6.6e-08 Score=70.73 Aligned_cols=97 Identities=21% Similarity=0.188 Sum_probs=75.2
Q ss_pred CCCcEEEeCCCccHHHHHHHhcCC-CeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCC
Q 038343 22 SNKSCFEVGSGVGLVGICLAHVKA-SKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESG 100 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~g~-~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~ 100 (191)
++.+|+|+|+|.|++|+.+|-..+ .+++++|.+..=+..++.-+...++. ++.+..-+.++..
T Consensus 65 ~~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~FL~~~~~~L~L~-------------nv~v~~~R~E~~~--- 128 (207)
T d1jsxa_ 65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLE-------------NIEPVQSRVEEFP--- 128 (207)
T ss_dssp CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCS-------------SEEEEECCTTTSC---
T ss_pred cCCceeeeeccCCceeeehhhhcccceEEEEecchHHHHHHHHHHHHcCCc-------------ceeeeccchhhhc---
Confidence 567999999999999998887654 49999999998888888777776653 4677776666542
Q ss_pred CCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCc
Q 038343 101 LSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVS 139 (191)
Q Consensus 101 ~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~ 139 (191)
...+||+|++- .....+.+++....+++++|...
T Consensus 129 -~~~~fD~V~sR----A~~~~~~ll~~~~~~l~~~g~~~ 162 (207)
T d1jsxa_ 129 -SEPPFDGVISR----AFASLNDMVSWCHHLPGEQGRFY 162 (207)
T ss_dssp -CCSCEEEEECS----CSSSHHHHHHHHTTSEEEEEEEE
T ss_pred -cccccceehhh----hhcCHHHHHHHHHHhcCCCcEEE
Confidence 23479999873 33568899999999999997533
|
| >d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Bacillus subtilis, Ermc' [TaxId: 1423]
Probab=98.45 E-value=5.2e-07 Score=67.14 Aligned_cols=88 Identities=19% Similarity=0.177 Sum_probs=60.1
Q ss_pred HHHHhhCCCCCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEe
Q 038343 11 SEFILSFPEIFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVH 90 (191)
Q Consensus 11 ~~~l~~~~~~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ 90 (191)
.+.+.......++.+|||+|||+|.++..+++.+. +|+++|+++.+++.++++...+ .++.+..
T Consensus 10 ~~~iv~~~~~~~~d~VlEIGpG~G~LT~~Ll~~~~-~v~avE~D~~l~~~l~~~~~~~---------------~n~~i~~ 73 (235)
T d1qama_ 10 IDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRCN-FVTAIEIDHKLCKTTENKLVDH---------------DNFQVLN 73 (235)
T ss_dssp HHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHHSS-EEEEECSCHHHHHHHHHHTTTC---------------CSEEEEC
T ss_pred HHHHHHhcCCCCCCeEEEECCCchHHHHHHHhCcC-ceEEEeeccchHHHHHHHhhcc---------------cchhhhh
Confidence 44455555556888999999999999998888865 9999999999999888754322 3566666
Q ss_pred ecCCCCCcCCCCCCCCCEEEEcccccCC
Q 038343 91 LPWESASESGLSAFVPEIILGADILYDR 118 (191)
Q Consensus 91 ldw~~~~~~~~~~~~fDvIi~~d~ly~~ 118 (191)
.|.-+.. ++......|+ +..-|+.
T Consensus 74 ~D~l~~~---~~~~~~~~vv-~NLPYnI 97 (235)
T d1qama_ 74 KDILQFK---FPKNQSYKIF-GNIPYNI 97 (235)
T ss_dssp CCGGGCC---CCSSCCCEEE-EECCGGG
T ss_pred hhhhhcc---ccccccceee-eeehhhh
Confidence 6654332 1222223344 5666655
|
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.42 E-value=6.9e-07 Score=66.85 Aligned_cols=91 Identities=11% Similarity=-0.061 Sum_probs=66.8
Q ss_pred CCCcEEEeCCCccHHHHHHHhcCC-CeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCC
Q 038343 22 SNKSCFEVGSGVGLVGICLAHVKA-SKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESG 100 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~g~-~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~ 100 (191)
...+|||+|||+|..++.+++..+ -+++..|. |++++ .... ..++++...|+-+..
T Consensus 81 ~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~-------~~~~------------~~ri~~~~gd~~~~~--- 137 (244)
T d1fp1d2 81 GISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIE-------NAPP------------LSGIEHVGGDMFASV--- 137 (244)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHT-------TCCC------------CTTEEEEECCTTTCC---
T ss_pred CCcEEEEecCCCcHHHHHHHHHCCCCeEEEecc-hhhhh-------ccCC------------CCCeEEecCCccccc---
Confidence 346899999999998887766533 38999998 55542 1111 146888888875432
Q ss_pred CCCCCCCEEEEcccccCCCC--hHHHHHHHHHHhccCCCC
Q 038343 101 LSAFVPEIILGADILYDRSC--FPDLVRILAILLNRRKSV 138 (191)
Q Consensus 101 ~~~~~fDvIi~~d~ly~~~~--~~~ll~~l~~ll~~~g~~ 138 (191)
...|+|+...++|+.++ ...+|+.+++.|+|+|+.
T Consensus 138 ---p~~D~~~l~~vLh~~~de~~~~iL~~~~~aL~pgg~l 174 (244)
T d1fp1d2 138 ---PQGDAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKV 174 (244)
T ss_dssp ---CCEEEEEEESSGGGSCHHHHHHHHHHHHHHEEEEEEE
T ss_pred ---ccceEEEEehhhhhCCHHHHHHHHHHHHHHcCCCcEE
Confidence 24699999999998765 457799999999999753
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.42 E-value=1.9e-07 Score=70.02 Aligned_cols=88 Identities=15% Similarity=0.086 Sum_probs=66.7
Q ss_pred CcEEEeCCCccHHHHHHHhcCC-CeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCCCC
Q 038343 24 KSCFEVGSGVGLVGICLAHVKA-SKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESGLS 102 (191)
Q Consensus 24 ~~VLElG~GtG~~~~~la~~g~-~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~~~ 102 (191)
.+|||+|||+|..++.+++..+ -++++.|. +++++.+ +. ..++++...|..+..
T Consensus 82 ~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~~-------~~------------~~rv~~~~gD~f~~~----- 136 (244)
T d1fp2a2 82 ESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENL-------SG------------SNNLTYVGGDMFTSI----- 136 (244)
T ss_dssp SEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTC-------CC------------BTTEEEEECCTTTCC-----
T ss_pred eEEEEecCCccHHHHHHHHhCCCCeEEEecC-HHHHHhC-------cc------------cCceEEEecCcccCC-----
Confidence 5799999999999887666533 38999999 6554322 11 146888888875432
Q ss_pred CCCCCEEEEcccccCCCCh--HHHHHHHHHHhccCCC
Q 038343 103 AFVPEIILGADILYDRSCF--PDLVRILAILLNRRKS 137 (191)
Q Consensus 103 ~~~fDvIi~~d~ly~~~~~--~~ll~~l~~ll~~~g~ 137 (191)
..+|+++...++|+..+. ..+|+.+++.|+|+|.
T Consensus 137 -p~aD~~~l~~vLHdw~d~~~~~iL~~~~~al~pgg~ 172 (244)
T d1fp2a2 137 -PNADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGK 172 (244)
T ss_dssp -CCCSEEEEESCGGGSCHHHHHHHHHHHHHHHSGGGC
T ss_pred -CCCcEEEEEeecccCChHHHHHHHHHHHHHcCcccC
Confidence 258999999999977654 4679999999999965
|
| >d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Hypothetical protein Lmo1582 species: Listeria monocytogenes [TaxId: 1639]
Probab=98.41 E-value=3.1e-07 Score=71.49 Aligned_cols=115 Identities=8% Similarity=-0.042 Sum_probs=75.3
Q ss_pred HHHHHHhhCCCCCCCCcEEEeCCCccHHHHHHHh----cC--CCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCC
Q 038343 9 LLSEFILSFPEIFSNKSCFEVGSGVGLVGICLAH----VK--ASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYED 82 (191)
Q Consensus 9 ~L~~~l~~~~~~~~~~~VLElG~GtG~~~~~la~----~g--~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~ 82 (191)
.+++++.......++.+|||.+||+|.+.+.+.. .+ ..+++++|+++.++..++.|+..++..
T Consensus 104 ~m~~l~~~~~~~~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~~----------- 172 (328)
T d2f8la1 104 IVAYLLEKVIQKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQK----------- 172 (328)
T ss_dssp HHHHHHHHHHTTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCC-----------
T ss_pred HHHHHHHHHhCCCCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhhh-----------
Confidence 3444443322233566899999999977775542 11 127999999999999999998887643
Q ss_pred CCeeEEEeecCCCCCcCCCCCCCCCEEEEcccccCCC------------------ChHHHHHHHHHHhccCCCCccc
Q 038343 83 PNVVQCVHLPWESASESGLSAFVPEIILGADILYDRS------------------CFPDLVRILAILLNRRKSVSSS 141 (191)
Q Consensus 83 ~~~i~~~~ldw~~~~~~~~~~~~fDvIi~~d~ly~~~------------------~~~~ll~~l~~ll~~~g~~~~~ 141 (191)
......++... ....+||+|+++.++-... ....++....++|+++|....+
T Consensus 173 ---~~~~~~d~~~~----~~~~~fD~vi~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~I 242 (328)
T d2f8la1 173 ---MTLLHQDGLAN----LLVDPVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFL 242 (328)
T ss_dssp ---CEEEESCTTSC----CCCCCEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEE
T ss_pred ---hhhhccccccc----cccccccccccCCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEEE
Confidence 33344443222 2335899999987652111 1223688888999999876544
|
| >d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TRM1-like domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=98.34 E-value=7.5e-07 Score=70.62 Aligned_cols=109 Identities=17% Similarity=0.039 Sum_probs=73.3
Q ss_pred CCCcEEEeCCCccHHHH-HHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCccccc--ccCCCCeeEEEeecCCCCCc
Q 038343 22 SNKSCFEVGSGVGLVGI-CLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLE--SYEDPNVVQCVHLPWESASE 98 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~-~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~--~~~~~~~i~~~~ldw~~~~~ 98 (191)
++.+|||..||||+-|+ ++...|+.+|++.|+|+.+++.+++|++.|+......... .......+.+...|+.....
T Consensus 45 ~~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~~ 124 (375)
T d2dula1 45 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA 124 (375)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred CCCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhhhhH
Confidence 57799999999999999 4555777899999999999999999999998653210000 00011234444444321110
Q ss_pred CCCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCC
Q 038343 99 SGLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRK 136 (191)
Q Consensus 99 ~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g 136 (191)
.....||+|.. |. | ....+++...-+.++.+|
T Consensus 125 --~~~~~fDvIDi-DP-f--Gs~~pfldsAi~a~~~~G 156 (375)
T d2dula1 125 --ERHRYFHFIDL-DP-F--GSPMEFLDTALRSAKRRG 156 (375)
T ss_dssp --HSTTCEEEEEE-CC-S--SCCHHHHHHHHHHEEEEE
T ss_pred --hhcCcCCcccC-CC-C--CCcHHHHHHHHHHhccCC
Confidence 12346999877 55 2 345778888888888775
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.31 E-value=4.3e-07 Score=69.20 Aligned_cols=108 Identities=10% Similarity=-0.007 Sum_probs=69.7
Q ss_pred CCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCCC
Q 038343 22 SNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESGL 101 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~~ 101 (191)
+.++||-||.|.|.+...+.+.+..+|+++|+++.+++.+++-...+....+. .......++++...|......
T Consensus 72 ~p~~vLiiG~G~G~~~~~~l~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~---~~~~~d~rv~i~~~Da~~~l~--- 145 (276)
T d1mjfa_ 72 KPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEA---MLNGKHEKAKLTIGDGFEFIK--- 145 (276)
T ss_dssp CCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHTCTTTTHHHH---HHTTCCSSEEEEESCHHHHHH---
T ss_pred CCceEEEecCCchHHHHHHHHhCCceEEEecCCHHHHHHHHHhhhhccchhhh---hhccCCCCceEEEChHHHHHh---
Confidence 45699999999998888777776679999999999999998754332210000 000011356666555322111
Q ss_pred CCCCCCEEEEcccccCCCC-----hHHHHHHHHHHhccCC
Q 038343 102 SAFVPEIILGADILYDRSC-----FPDLVRILAILLNRRK 136 (191)
Q Consensus 102 ~~~~fDvIi~~d~ly~~~~-----~~~ll~~l~~ll~~~g 136 (191)
...+||+||. |+...... -..+.+.+++.|+|+|
T Consensus 146 ~~~~yDvIi~-D~~~~~~~~~~L~t~eF~~~~~~~L~~~G 184 (276)
T d1mjfa_ 146 NNRGFDVIIA-DSTDPVGPAKVLFSEEFYRYVYDALNNPG 184 (276)
T ss_dssp HCCCEEEEEE-ECCCCC-----TTSHHHHHHHHHHEEEEE
T ss_pred ccCCCCEEEE-eCCCCCCCcccccCHHHHHhhHhhcCCCc
Confidence 1357999996 54332211 3578999999999997
|
| >d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Probable dimethyladenosine transferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.30 E-value=1.5e-06 Score=66.11 Aligned_cols=88 Identities=15% Similarity=0.147 Sum_probs=62.6
Q ss_pred HHHhhCCCCCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEee
Q 038343 12 EFILSFPEIFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHL 91 (191)
Q Consensus 12 ~~l~~~~~~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~l 91 (191)
+.+.......++..|||+|+|+|.++..+++.+. +|+++++|+.+++.+++....+... .++.+...
T Consensus 11 ~kIv~~~~~~~~d~VlEIGPG~G~LT~~Ll~~~~-~v~aiE~D~~l~~~L~~~~~~~~~~------------~~~~~i~~ 77 (278)
T d1zq9a1 11 NSIIDKAALRPTDVVLEVGPGTGNMTVKLLEKAK-KVVACELDPRLVAELHKRVQGTPVA------------SKLQVLVG 77 (278)
T ss_dssp HHHHHHTCCCTTCEEEEECCTTSTTHHHHHHHSS-EEEEEESCHHHHHHHHHHHTTSTTG------------GGEEEEES
T ss_pred HHHHHHhCCCCCCEEEEECCCchHHHHHHHhcCC-cEEEEEEccchhHHHHHHHhhhccc------------cchhhhHH
Confidence 3343444445677999999999999998888875 9999999999999998877554322 35777887
Q ss_pred cCCCCCcCCCCCCCCCEEEEcccccCC
Q 038343 92 PWESASESGLSAFVPEIILGADILYDR 118 (191)
Q Consensus 92 dw~~~~~~~~~~~~fDvIi~~d~ly~~ 118 (191)
|+-+... ..++.||++ .-|+.
T Consensus 78 D~l~~~~-----~~~~~vV~N-LPY~I 98 (278)
T d1zq9a1 78 DVLKTDL-----PFFDTCVAN-LPYQI 98 (278)
T ss_dssp CTTTSCC-----CCCSEEEEE-CCGGG
T ss_pred HHhhhhh-----hhhhhhhcc-hHHHH
Confidence 7755421 235667765 44543
|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Bacillus subtilis [TaxId: 1423]
Probab=98.30 E-value=2.3e-06 Score=64.96 Aligned_cols=104 Identities=16% Similarity=-0.002 Sum_probs=71.6
Q ss_pred CCCcEEEeCCCccHHHHHHHhc-CCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCC
Q 038343 22 SNKSCFEVGSGVGLVGICLAHV-KASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESG 100 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~-g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~ 100 (191)
+.++||-||.|.|.+...+.+. +..+|+++|+++.+++.+++....+....+ ..++.+...|.......
T Consensus 75 ~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~---------d~r~~i~~~D~~~~l~~- 144 (274)
T d1iy9a_ 75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLD---------DPRVDVQVDDGFMHIAK- 144 (274)
T ss_dssp SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTT---------STTEEEEESCSHHHHHT-
T ss_pred CcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhccccc---------CCCeEEEechHHHHHhh-
Confidence 3469999999999888877764 557999999999999999987765432211 14566666553222111
Q ss_pred CCCCCCCEEEE--cccccCCC--ChHHHHHHHHHHhccCC
Q 038343 101 LSAFVPEIILG--ADILYDRS--CFPDLVRILAILLNRRK 136 (191)
Q Consensus 101 ~~~~~fDvIi~--~d~ly~~~--~~~~ll~~l~~ll~~~g 136 (191)
...+||+|+. .|...... .-..+.+.+++.|+|+|
T Consensus 145 -~~~~yDvIi~D~~~p~~~~~~L~t~eFy~~~~~~L~~~G 183 (274)
T d1iy9a_ 145 -SENQYDVIMVDSTEPVGPAVNLFTKGFYAGIAKALKEDG 183 (274)
T ss_dssp -CCSCEEEEEESCSSCCSCCCCCSTTHHHHHHHHHEEEEE
T ss_pred -cCCCCCEEEEcCCCCCCcchhhccHHHHHHHHhhcCCCc
Confidence 2357999997 22221111 26678999999999997
|
| >d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Bacillus subtilis [TaxId: 1423]
Probab=98.28 E-value=8e-07 Score=66.13 Aligned_cols=101 Identities=15% Similarity=0.108 Sum_probs=71.6
Q ss_pred CCCcEEEeCCCccHHHHHHHhc-CCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCC
Q 038343 22 SNKSCFEVGSGVGLVGICLAHV-KASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESG 100 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~-g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~ 100 (191)
...+++|+|+|.|++|+.++-. ...+++++|.+..=...++..+..-++. ++.+.....+......
T Consensus 70 ~~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~~FL~~v~~~L~L~-------------n~~i~~~R~E~~~~~~ 136 (239)
T d1xdza_ 70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLE-------------NTTFCHDRAETFGQRK 136 (239)
T ss_dssp GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCS-------------SEEEEESCHHHHTTCT
T ss_pred CCCeEEeecCCCchHHHHHHHhCCCccceeecchHHHHHHHHHHHHHhCCC-------------CcEEEeehhhhccccc
Confidence 4568999999999999988864 4459999999988777777766666654 3444443332211111
Q ss_pred CCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCc
Q 038343 101 LSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVS 139 (191)
Q Consensus 101 ~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~ 139 (191)
....+||+|++- ....+..+++....+++++|...
T Consensus 137 ~~~~~~D~v~sR----Ava~l~~ll~~~~~~l~~~g~~i 171 (239)
T d1xdza_ 137 DVRESYDIVTAR----AVARLSVLSELCLPLVKKNGLFV 171 (239)
T ss_dssp TTTTCEEEEEEE----CCSCHHHHHHHHGGGEEEEEEEE
T ss_pred cccccceEEEEh----hhhCHHHHHHHHhhhcccCCEEE
Confidence 123579999983 34578999999999999997533
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.25 E-value=2e-07 Score=67.35 Aligned_cols=104 Identities=15% Similarity=0.104 Sum_probs=68.0
Q ss_pred CCCCcEEEeCCCccHHHHHHHh-cCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCc-
Q 038343 21 FSNKSCFEVGSGVGLVGICLAH-VKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASE- 98 (191)
Q Consensus 21 ~~~~~VLElG~GtG~~~~~la~-~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~- 98 (191)
.++..+||++||+|..+..+.. ....+|+++|.++.+++.++++++..+ .++.+...++.+...
T Consensus 22 ~~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~~--------------~r~~~~~~~f~~~~~~ 87 (192)
T d1m6ya2 22 EDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFS--------------DRVSLFKVSYREADFL 87 (192)
T ss_dssp CTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGT--------------TTEEEEECCGGGHHHH
T ss_pred CCCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhcccc--------------ccccchhHHHhhHHHH
Confidence 4678999999999977775544 444599999999999999998876654 345556655433211
Q ss_pred -CCCCCCCCCEEEEccccc----------CCCChHHHHHHHHHHhccCCCCc
Q 038343 99 -SGLSAFVPEIILGADILY----------DRSCFPDLVRILAILLNRRKSVS 139 (191)
Q Consensus 99 -~~~~~~~fDvIi~~d~ly----------~~~~~~~ll~~l~~ll~~~g~~~ 139 (191)
..+...+||-|+. |.=+ ........+....++|+++|...
T Consensus 88 ~~~~~~~~vdgIl~-DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ 138 (192)
T d1m6ya2 88 LKTLGIEKVDGILM-DLGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIV 138 (192)
T ss_dssp HHHTTCSCEEEEEE-ECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEE
T ss_pred HHHcCCCCcceeee-ccchhHhhhhhhhccchhHHHHHHHHHHhcCCCCeee
Confidence 0122357888875 2111 11234566777777888886433
|
| >d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Chemotaxis receptor methyltransferase CheR, C-terminal domain domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=98.24 E-value=2.7e-07 Score=66.68 Aligned_cols=114 Identities=18% Similarity=0.101 Sum_probs=64.8
Q ss_pred CCCcEEEeCCCccH--HHH--HHHhc----CC-CeEEEEcCChHHHHHHHHHHHHhc-CCCCcc-------cccccCC--
Q 038343 22 SNKSCFEVGSGVGL--VGI--CLAHV----KA-SKVTLTDGDHLTLANMRSNLELNQ-LSTDTS-------LLESYED-- 82 (191)
Q Consensus 22 ~~~~VLElG~GtG~--~~~--~la~~----g~-~~v~~tD~~~~~l~~~~~n~~~n~-~~~~~~-------~~~~~~~-- 82 (191)
+..+|++.|||||- .++ .+... +. -++++||+++.+++.+++.+-... ...... .......
T Consensus 24 ~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~~~~~ 103 (193)
T d1af7a2 24 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG 103 (193)
T ss_dssp SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred CCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeecCCCccc
Confidence 34599999999994 333 33321 11 179999999999998875321100 000000 0000000
Q ss_pred --------CCeeEEEeecCCCCCcCCCCCCCCCEEEEcccccCCC--ChHHHHHHHHHHhccCCC
Q 038343 83 --------PNVVQCVHLPWESASESGLSAFVPEIILGADILYDRS--CFPDLVRILAILLNRRKS 137 (191)
Q Consensus 83 --------~~~i~~~~ldw~~~~~~~~~~~~fDvIi~~d~ly~~~--~~~~ll~~l~~ll~~~g~ 137 (191)
...+.+...+.... .....++||+|+|-.|+.+.+ ....+++.+.+.|+|||-
T Consensus 104 ~~~~~~~~~~~v~~~~~~~~~~--~~~~~~~fDvI~CRNVLiYf~~~~~~~vl~~l~~~L~pGG~ 166 (193)
T d1af7a2 104 LVRVRQELANYVEFSSVNLLEK--QYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGL 166 (193)
T ss_dssp EEEECHHHHTTEEEEECCTTCS--SCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEE
T ss_pred eeehHHHHHHHHHHhhhhcccc--ccCCCCCccEEEeehhHHhcCHHHHHHHHHHHHHHhCCCcE
Confidence 01122232222211 112346899999999887544 457899999999999973
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=98.23 E-value=8.2e-07 Score=68.74 Aligned_cols=105 Identities=15% Similarity=0.058 Sum_probs=71.5
Q ss_pred CCCcEEEeCCCccHHHHHHHhc-CCCeEEEEcCChHHHHHHHHHHHHh-cCCCCcccccccCCCCeeEEEeecCCCCCcC
Q 038343 22 SNKSCFEVGSGVGLVGICLAHV-KASKVTLTDGDHLTLANMRSNLELN-QLSTDTSLLESYEDPNVVQCVHLPWESASES 99 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~-g~~~v~~tD~~~~~l~~~~~n~~~n-~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~ 99 (191)
..++||.||.|.|.+...+.+. +..+|+++|+++.+++.+++.+... .... ...++++...|+......
T Consensus 77 ~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~---------~d~rv~i~~~Da~~~l~~ 147 (312)
T d1uira_ 77 EPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAF---------DDPRAVLVIDDARAYLER 147 (312)
T ss_dssp CCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGG---------GCTTEEEEESCHHHHHHH
T ss_pred CcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCcc---------CCCceEEEEchHHHHhhh
Confidence 3569999999999888877665 3459999999999999999876432 1111 114567776665433211
Q ss_pred CCCCCCCCEEEE--cccccCCC-----ChHHHHHHHHHHhccCCC
Q 038343 100 GLSAFVPEIILG--ADILYDRS-----CFPDLVRILAILLNRRKS 137 (191)
Q Consensus 100 ~~~~~~fDvIi~--~d~ly~~~-----~~~~ll~~l~~ll~~~g~ 137 (191)
...+||+|+. .|...... ....+.+.+++.|+|+|-
T Consensus 148 --~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gv 190 (312)
T d1uira_ 148 --TEERYDVVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGV 190 (312)
T ss_dssp --CCCCEEEEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEE
T ss_pred --cCCcccEEEEeCCCcccccchhhhhhhHHHHHHHHHhcCCCce
Confidence 2357999995 33333221 135789999999999973
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.15 E-value=2.4e-06 Score=63.67 Aligned_cols=92 Identities=17% Similarity=0.001 Sum_probs=65.4
Q ss_pred CCcEEEeCCCccHHHHHHHhcCC-CeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCCC
Q 038343 23 NKSCFEVGSGVGLVGICLAHVKA-SKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESGL 101 (191)
Q Consensus 23 ~~~VLElG~GtG~~~~~la~~g~-~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~~ 101 (191)
..+|||+|||+|..++.+++..+ -++++.|. |.+++. .. ...++.+...|+.+..
T Consensus 82 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~-------~~------------~~~r~~~~~~d~~~~~---- 137 (243)
T d1kyza2 82 LKSLVDVGGGTGAVINTIVSKYPTIKGINFDL-PHVIED-------AP------------SYPGVEHVGGDMFVSI---- 137 (243)
T ss_dssp CSEEEEETCTTSHHHHHHHHHCTTSEEEEEEC-TTTTTT-------CC------------CCTTEEEEECCTTTCC----
T ss_pred CcEEEEecCCCcHHHHHHHHHCCCCeEEEccc-HHhhhh-------cc------------cCCceEEecccccccC----
Confidence 46899999999999997776544 38999998 444321 11 1146788888875432
Q ss_pred CCCCCCEEEEcccccCCC--ChHHHHHHHHHHhccCCCCcc
Q 038343 102 SAFVPEIILGADILYDRS--CFPDLVRILAILLNRRKSVSS 140 (191)
Q Consensus 102 ~~~~fDvIi~~d~ly~~~--~~~~ll~~l~~ll~~~g~~~~ 140 (191)
+ ..|+++...++++.. ....+++.+++.|+|+|+..+
T Consensus 138 P--~ad~~~l~~vlh~~~d~~~~~iL~~~~~al~pgg~~li 176 (243)
T d1kyza2 138 P--KADAVFMKWICHDWSDEHCLKFLKNCYEALPDNGKVIV 176 (243)
T ss_dssp C--CCSCEECSSSSTTSCHHHHHHHHHHHHHHCCSSSCEEE
T ss_pred C--CcceEEEEEEeecCCHHHHHHHHHHHHHhcCCCceEEE
Confidence 2 357778888888664 466789999999999976543
|
| >d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Streptococcus pneumoniae, Ermam [TaxId: 1313]
Probab=98.14 E-value=7.4e-08 Score=72.30 Aligned_cols=82 Identities=21% Similarity=0.241 Sum_probs=54.8
Q ss_pred CCCCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCC
Q 038343 18 PEIFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESAS 97 (191)
Q Consensus 18 ~~~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~ 97 (191)
.+..++.+|||+|||+|.++..+++.+. +|+++|+++.+++.++++... ..++.+...|..+..
T Consensus 25 ~~~~~~d~VLEIGpG~G~LT~~L~~~~~-~v~aIE~D~~l~~~l~~~~~~---------------~~n~~ii~~D~l~~~ 88 (245)
T d1yuba_ 25 LNLKETDTVYEIGTGKGHLTTKLAKISK-QVTSIELDSHLFNLSSEKLKL---------------NTRVTLIHQDILQFQ 88 (245)
T ss_dssp CCCCSSEEEEECSCCCSSCSHHHHHHSS-EEEESSSSCSSSSSSSCTTTT---------------CSEEEECCSCCTTTT
T ss_pred cCCCCCCeEEEECCCccHHHHHHHhhcC-ceeEeeecccchhhhhhhhhh---------------ccchhhhhhhhhccc
Confidence 3344677999999999999998888865 999999998877666543221 135666666665432
Q ss_pred cCCCCCCCCCEEEEcccccCCC
Q 038343 98 ESGLSAFVPEIILGADILYDRS 119 (191)
Q Consensus 98 ~~~~~~~~fDvIi~~d~ly~~~ 119 (191)
++...++.|+ +..-|+..
T Consensus 89 ---~~~~~~~~vv-~NLPY~Is 106 (245)
T d1yuba_ 89 ---FPNKQRYKIV-GNIPYHLS 106 (245)
T ss_dssp ---CCCSSEEEEE-EECCSSSC
T ss_pred ---cccceeeeEe-eeeehhhh
Confidence 2333444455 45667654
|
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermotoga maritima [TaxId: 2336]
Probab=98.12 E-value=2.6e-06 Score=65.27 Aligned_cols=102 Identities=15% Similarity=0.039 Sum_probs=69.8
Q ss_pred CCcEEEeCCCccHHHHHHHhc-CCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCCC
Q 038343 23 NKSCFEVGSGVGLVGICLAHV-KASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESGL 101 (191)
Q Consensus 23 ~~~VLElG~GtG~~~~~la~~-g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~~ 101 (191)
.++||-||.|.|.+...+.+. +..+|+++|+++.+++.+++-+..+..... ..++++...|.......
T Consensus 90 pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~---------d~rv~v~~~Da~~~l~~-- 158 (295)
T d1inla_ 90 PKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFD---------DPRAEIVIANGAEYVRK-- 158 (295)
T ss_dssp CCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGG---------CTTEEEEESCHHHHGGG--
T ss_pred CceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhccccc---------CCCcEEEhhhHHHHHhc--
Confidence 469999999999888777665 456899999999999999887655432111 13566666554322211
Q ss_pred CCCCCCEEEEccccc---CC---CChHHHHHHHHHHhccCC
Q 038343 102 SAFVPEIILGADILY---DR---SCFPDLVRILAILLNRRK 136 (191)
Q Consensus 102 ~~~~fDvIi~~d~ly---~~---~~~~~ll~~l~~ll~~~g 136 (191)
...+||+|+. |+.. .+ -....+.+.+++.|+|+|
T Consensus 159 ~~~~yDvIi~-D~~dp~~~~~~~L~t~efy~~~~~~L~~~G 198 (295)
T d1inla_ 159 FKNEFDVIII-DSTDPTAGQGGHLFTEEFYQACYDALKEDG 198 (295)
T ss_dssp CSSCEEEEEE-EC----------CCSHHHHHHHHHHEEEEE
T ss_pred CCCCCCEEEE-cCCCCCcCchhhhccHHHHHHHHhhcCCCc
Confidence 2357999996 3322 11 125788999999999997
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.07 E-value=2.6e-06 Score=64.99 Aligned_cols=103 Identities=10% Similarity=-0.014 Sum_probs=68.8
Q ss_pred CCCcEEEeCCCccHHHHHHHhc-CCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCC
Q 038343 22 SNKSCFEVGSGVGLVGICLAHV-KASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESG 100 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~-g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~ 100 (191)
..++||-||.|.|.+...+.+. +..+++++|+++.+++.+++-...+..... ..++++...|.......
T Consensus 78 ~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~---------d~rv~i~~~Da~~~l~~- 147 (285)
T d2o07a1 78 NPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYS---------SSKLTLHVGDGFEFMKQ- 147 (285)
T ss_dssp SCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGG---------CTTEEEEESCHHHHHHT-
T ss_pred CcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccC---------CCCceEEEccHHHHHhc-
Confidence 3468999999999888877765 456999999999999999887655432111 14566666553222111
Q ss_pred CCCCCCCEEEEcccccCCC-----ChHHHHHHHHHHhccCC
Q 038343 101 LSAFVPEIILGADILYDRS-----CFPDLVRILAILLNRRK 136 (191)
Q Consensus 101 ~~~~~fDvIi~~d~ly~~~-----~~~~ll~~l~~ll~~~g 136 (191)
...+||+|+. |+..... ....+.+.+++.|+|+|
T Consensus 148 -~~~~yDvIi~-D~~~p~~~~~~L~t~eF~~~~~~~L~~~G 186 (285)
T d2o07a1 148 -NQDAFDVIIT-DSSDPMGPAESLFKESYYQLMKTALKEDG 186 (285)
T ss_dssp -CSSCEEEEEE-ECC-----------CHHHHHHHHHEEEEE
T ss_pred -CCCCCCEEEE-cCCCCCCcccccccHHHHHHHHHhcCCCC
Confidence 2357999997 5432111 13456889999999997
|
| >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.06 E-value=9.1e-06 Score=62.06 Aligned_cols=104 Identities=12% Similarity=0.005 Sum_probs=70.0
Q ss_pred CCCcEEEeCCCccHHHHHHHhc-CCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCC
Q 038343 22 SNKSCFEVGSGVGLVGICLAHV-KASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESG 100 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~-g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~ 100 (191)
+.++||-||.|.|.+...+.+. +..+++++|+++++++.+++-...+..... ..++++...|...... .
T Consensus 80 ~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~---------~~r~~i~~~Da~~~l~-~ 149 (290)
T d1xj5a_ 80 NPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYE---------DPRVNLVIGDGVAFLK-N 149 (290)
T ss_dssp CCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGG---------STTEEEEESCHHHHHH-T
T ss_pred CCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhcccc---------CCCcEEEEccHHHHHh-h
Confidence 3469999999999888877775 446899999999999999887654432111 1355555554221111 1
Q ss_pred CCCCCCCEEEEcccccCCC-----ChHHHHHHHHHHhccCC
Q 038343 101 LSAFVPEIILGADILYDRS-----CFPDLVRILAILLNRRK 136 (191)
Q Consensus 101 ~~~~~fDvIi~~d~ly~~~-----~~~~ll~~l~~ll~~~g 136 (191)
...++||+||. |+.-... .-..+.+.+++.|+|+|
T Consensus 150 ~~~~~yDvIi~-D~~dp~~~~~~L~t~eF~~~~~~~L~~~G 189 (290)
T d1xj5a_ 150 AAEGSYDAVIV-DSSDPIGPAKELFEKPFFQSVARALRPGG 189 (290)
T ss_dssp SCTTCEEEEEE-CCCCTTSGGGGGGSHHHHHHHHHHEEEEE
T ss_pred ccccCccEEEE-cCCCCCCcchhhCCHHHHHHHHHhcCCCc
Confidence 22358999997 4432111 14568999999999997
|
| >d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: High level kasugamycin resistance protein KsgA species: Escherichia coli [TaxId: 562]
Probab=97.99 E-value=2.9e-06 Score=63.63 Aligned_cols=50 Identities=16% Similarity=0.199 Sum_probs=40.3
Q ss_pred HhhCCCCCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHH
Q 038343 14 ILSFPEIFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSN 64 (191)
Q Consensus 14 l~~~~~~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n 64 (191)
+.......++..|||+|||+|.++..+++.+. +|+++|+|+.+++.++..
T Consensus 13 Iv~~~~~~~~d~vlEIGpG~G~LT~~Ll~~~~-~v~aiEiD~~l~~~L~~~ 62 (252)
T d1qyra_ 13 IVSAINPQKGQAMVEIGPGLAALTEPVGERLD-QLTVIELDRDLAARLQTH 62 (252)
T ss_dssp HHHHHCCCTTCCEEEECCTTTTTHHHHHTTCS-CEEEECCCHHHHHHHHTC
T ss_pred HHHhcCCCCCCEEEEECCCchHHHHHHHccCC-ceEEEEeccchhHHHHHH
Confidence 33333344678999999999999999988865 899999999998888753
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=97.95 E-value=4.6e-06 Score=64.24 Aligned_cols=103 Identities=13% Similarity=-0.016 Sum_probs=65.7
Q ss_pred CCcEEEeCCCccHHHHHHHhcC-CCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCCC
Q 038343 23 NKSCFEVGSGVGLVGICLAHVK-ASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESGL 101 (191)
Q Consensus 23 ~~~VLElG~GtG~~~~~la~~g-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~~ 101 (191)
.++||-||.|.|.+...+.+.. ..+|+++|+++.+++.+++-...+..... ..++++...|...... .
T Consensus 107 pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~---------dprv~i~i~Da~~~l~--~ 175 (312)
T d2b2ca1 107 PKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFS---------HPKLDLFCGDGFEFLK--N 175 (312)
T ss_dssp CCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGG---------CTTEEEECSCHHHHHH--H
T ss_pred CCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccC---------CCCeEEEEchHHHHHH--h
Confidence 4589999999998888777753 46999999999999999876544321111 1345555444221111 1
Q ss_pred CCCCCCEEEEcccccCC---C--ChHHHHHHHHHHhccCCC
Q 038343 102 SAFVPEIILGADILYDR---S--CFPDLVRILAILLNRRKS 137 (191)
Q Consensus 102 ~~~~fDvIi~~d~ly~~---~--~~~~ll~~l~~ll~~~g~ 137 (191)
...+||+||. |+.-.. . ....+.+.+++.|+|+|-
T Consensus 176 ~~~~yDvII~-D~~dp~~~~~~L~t~eFy~~~~~~L~~~Gi 215 (312)
T d2b2ca1 176 HKNEFDVIIT-DSSDPVGPAESLFGQSYYELLRDALKEDGI 215 (312)
T ss_dssp CTTCEEEEEE-CCC-------------HHHHHHHHEEEEEE
T ss_pred CCCCCCEEEE-cCCCCCCcchhhhhHHHHHHHHhhcCCCcE
Confidence 2357999997 432211 1 245668899999999973
|
| >d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.73 E-value=0.00013 Score=55.23 Aligned_cols=50 Identities=16% Similarity=0.189 Sum_probs=41.4
Q ss_pred CCCcEEEeCCCccHHHHHHHhcCC-CeEEEEcCChHHHHHHHHHHHHhcCC
Q 038343 22 SNKSCFEVGSGVGLVGICLAHVKA-SKVTLTDGDHLTLANMRSNLELNQLS 71 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~g~-~~v~~tD~~~~~l~~~~~n~~~n~~~ 71 (191)
++.+|||+.||.|.=+..++.++. ..|++.|.++.-+..++++++..+..
T Consensus 102 ~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~g~~ 152 (284)
T d1sqga2 102 NGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMK 152 (284)
T ss_dssp TTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCC
T ss_pred ccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHhhhhhccccc
Confidence 677999999999976665555433 48999999999999999999988854
|
| >d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhiQ-like domain: Hypothetical protein YhiQ species: Shigella flexneri [TaxId: 623]
Probab=97.68 E-value=6.7e-05 Score=55.75 Aligned_cols=103 Identities=15% Similarity=0.175 Sum_probs=64.5
Q ss_pred CcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCCCCC
Q 038343 24 KSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESGLSA 103 (191)
Q Consensus 24 ~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~~~~ 103 (191)
.+|||+-||.|.-++.++..|+ +|+++|.++.+...++++++.......... ....++++...|-.+.... ..
T Consensus 90 ~~VlD~TaGlG~Da~vlA~~G~-~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~----~~~~ri~li~~Ds~~~L~~--~~ 162 (250)
T d2oyra1 90 PDVVDATAGLGRDAFVLASVGC-RVRMLERNPVVAALLDDGLARGYADAEIGG----WLQERLQLIHASSLTALTD--IT 162 (250)
T ss_dssp CCEEETTCTTCHHHHHHHHHTC-CEEEEECCHHHHHHHHHHHHHHHHCTTTHH----HHHHHEEEEESCHHHHSTT--CS
T ss_pred CEEEECCCcccHHHHHHHhCCC-EEEEEccCHHHHHHHHHHHHHHHhCchhHH----HHhhhheeecCcHHHHHhc--cC
Confidence 4899999999999999999997 899999999988888887765432210000 0002456665542211111 12
Q ss_pred CCCCEEEEcccccCCCChHH----HHHHHHHHhcc
Q 038343 104 FVPEIILGADILYDRSCFPD----LVRILAILLNR 134 (191)
Q Consensus 104 ~~fDvIi~~d~ly~~~~~~~----ll~~l~~ll~~ 134 (191)
.+||+|+. |.+|....-.. -++.++.+...
T Consensus 163 ~~~DvIYl-DPMFp~~~Ksa~~kk~m~~l~~l~~~ 196 (250)
T d2oyra1 163 PRPQVVYL-DPMFPHKQKSALVKKEMRVFQSLVGP 196 (250)
T ss_dssp SCCSEEEE-CCCCCCCCC-----HHHHHHHHHSCC
T ss_pred CCCCEEEE-CCCCccccccccchhHHHHHHhhccC
Confidence 46999997 88885543333 34444554433
|
| >d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: DNA methylase TaqI, N-terminal domain domain: DNA methylase TaqI, N-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=97.66 E-value=3.6e-05 Score=55.70 Aligned_cols=50 Identities=16% Similarity=0.125 Sum_probs=35.6
Q ss_pred HHHHHHhhCCCCCCCCcEEEeCCCccHHHHHHHh-c-CCCeEEEEcCChHHH
Q 038343 9 LLSEFILSFPEIFSNKSCFEVGSGVGLVGICLAH-V-KASKVTLTDGDHLTL 58 (191)
Q Consensus 9 ~L~~~l~~~~~~~~~~~VLElG~GtG~~~~~la~-~-g~~~v~~tD~~~~~l 58 (191)
.+++++.......++.+|||.|||+|.+...+.+ . ....+++.|+++.++
T Consensus 6 ~i~~~m~~l~~~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~ 57 (223)
T d2ih2a1 6 EVVDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKAL 57 (223)
T ss_dssp HHHHHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTC
T ss_pred HHHHHHHHhcCCCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHH
Confidence 4566666655555788999999999976654443 2 234799999987643
|
| >d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Hypothetical methyltransferase PH1374 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=97.58 E-value=0.00086 Score=51.32 Aligned_cols=50 Identities=18% Similarity=0.116 Sum_probs=40.3
Q ss_pred CCCcEEEeCCCccHHHHHHHhc--CCCeEEEEcCChHHHHHHHHHHHHhcCC
Q 038343 22 SNKSCFEVGSGVGLVGICLAHV--KASKVTLTDGDHLTLANMRSNLELNQLS 71 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~--g~~~v~~tD~~~~~l~~~~~n~~~n~~~ 71 (191)
+|.+|||+.||.|.=+..++.. +...+++.|.++.-+..+++|++..+..
T Consensus 116 ~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~~ 167 (313)
T d1ixka_ 116 PGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVL 167 (313)
T ss_dssp TTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCC
T ss_pred ccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHhh
Confidence 6789999999999765555443 2348999999999999999999887754
|
| >d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Type I restriction enzyme StySJI M protein species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=97.52 E-value=0.0001 Score=58.88 Aligned_cols=118 Identities=13% Similarity=0.085 Sum_probs=76.2
Q ss_pred HHHHHhhCCCCCCCCcEEEeCCCccHHHHHHHhc----C----------CCeEEEEcCChHHHHHHHHHHHHhcCCCCcc
Q 038343 10 LSEFILSFPEIFSNKSCFEVGSGVGLVGICLAHV----K----------ASKVTLTDGDHLTLANMRSNLELNQLSTDTS 75 (191)
Q Consensus 10 L~~~l~~~~~~~~~~~VLElG~GtG~~~~~la~~----g----------~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~ 75 (191)
+++++.......++.+|+|-.||+|.+-+.+.+. + ...+++.|+++.+...++.|+..++....
T Consensus 150 Iv~~mv~ll~~~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~g~~~~-- 227 (425)
T d2okca1 150 LIQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTD-- 227 (425)
T ss_dssp HHHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSS--
T ss_pred hhHhhheeccCcccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhcCCccc--
Confidence 4455544333335679999999999776654432 1 12599999999999999999988775421
Q ss_pred cccccCCCCeeEEEeecCCCCCcCCCCCCCCCEEEEcccccCCC-----------------ChHHHHHHHHHHhccCCCC
Q 038343 76 LLESYEDPNVVQCVHLPWESASESGLSAFVPEIILGADILYDRS-----------------CFPDLVRILAILLNRRKSV 138 (191)
Q Consensus 76 ~~~~~~~~~~i~~~~ldw~~~~~~~~~~~~fDvIi~~d~ly~~~-----------------~~~~ll~~l~~ll~~~g~~ 138 (191)
.......|.-.. ....+||+||++.++-... ..-.++..+.++|+++|+.
T Consensus 228 ---------~~~i~~~d~l~~----~~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~ 294 (425)
T d2okca1 228 ---------RSPIVCEDSLEK----EPSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRA 294 (425)
T ss_dssp ---------CCSEEECCTTTS----CCSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEE
T ss_pred ---------cceeecCchhhh----hcccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcCCCCeE
Confidence 122233332221 2335799999987762110 1235788899999999876
Q ss_pred cccc
Q 038343 139 SSSR 142 (191)
Q Consensus 139 ~~~~ 142 (191)
..+.
T Consensus 295 ~iI~ 298 (425)
T d2okca1 295 AVVL 298 (425)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 6543
|
| >d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap methylase domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 species: Dengue virus 2 [TaxId: 11060]
Probab=97.51 E-value=0.00025 Score=52.39 Aligned_cols=155 Identities=11% Similarity=-0.004 Sum_probs=82.5
Q ss_pred cHHHHHHHHhhCCCCCCCCcEEEeCCCccHHHHHHHhcCC-CeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCC
Q 038343 6 SSLLLSEFILSFPEIFSNKSCFEVGSGVGLVGICLAHVKA-SKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPN 84 (191)
Q Consensus 6 ~a~~L~~~l~~~~~~~~~~~VLElG~GtG~~~~~la~~g~-~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~ 84 (191)
++..|.+...+. ...++.+|+|||||.|..+.+++.... ..|.+.++--.. ....+.... ...+
T Consensus 51 ~~~Kl~~~~~~~-~~~~~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG~d~--------~e~P~~~~~------~~~n 115 (257)
T d2p41a1 51 GSAKLRWFVERN-LVTPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPG--------HEEPIPMST------YGWN 115 (257)
T ss_dssp HHHHHHHHHHTT-SSCCCEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTT--------SCCCCCCCS------TTGG
T ss_pred HHHHHHHHHHhc-CccCCCeEEEecCCCChHHHHHHhhcCCCceeEEEecCcc--------ccCCccccc------cccc
Confidence 567776655543 455677999999999999998887642 367777763110 000000000 0000
Q ss_pred eeEEEeecCCCCCcCCCCCCCCCEEEEcccccCCCC-------hHHHHHHHHHHhccCCCCccccccCCCCcccccc---
Q 038343 85 VVQCVHLPWESASESGLSAFVPEIILGADILYDRSC-------FPDLVRILAILLNRRKSVSSSRKESSKGFTLDTK--- 154 (191)
Q Consensus 85 ~i~~~~ldw~~~~~~~~~~~~fDvIi~~d~ly~~~~-------~~~ll~~l~~ll~~~g~~~~~~~~~~~~~~~~~~--- 154 (191)
-+..... .. -........|+|+| |+--+..+ .-.+++...++|+|+|..++-+++|-...-++..
T Consensus 116 i~~~~~~---~d-v~~l~~~~~D~vlc-Dm~ess~~~~vd~~Rtl~vLela~~wLk~gg~FvvKVl~py~~~v~e~le~l 190 (257)
T d2p41a1 116 LVRLQSG---VD-VFFIPPERCDTLLC-DIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLNPYMSSVIEKMEAL 190 (257)
T ss_dssp GEEEECS---CC-TTTSCCCCCSEEEE-CCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESCCCSHHHHHHHHHH
T ss_pred cccchhh---hh-HHhcCCCcCCEEEe-eCCCCCCCchhhhhhHHHHHHHHHHHcccCCEEEEEECCCCChHHHHHHHHH
Confidence 1111111 11 11234568999998 54322221 2256777788999999888777776543333221
Q ss_pred ---cCCCCccccccccCCCCEEEEEecccC
Q 038343 155 ---CNTNDLNDLTAVTSKGPVAYIATVIRN 181 (191)
Q Consensus 155 ---~~~~~~~~~~~~~~~~~~~~va~~~r~ 181 (191)
..+ .....+...+.....|+.+..|.
T Consensus 191 q~~fgg-~lVR~P~SRnst~EmY~Vs~~~~ 219 (257)
T d2p41a1 191 QRKHGG-ALVRNPLSRNSTHEMYWVSNASG 219 (257)
T ss_dssp HHHHCC-EEECCTTSCTTCCCEEEETTCCC
T ss_pred HHHhCC-eeEcCCCCccccceeEEeecccc
Confidence 122 22222234444555666665553
|
| >d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: NOL1R species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.35 E-value=0.00037 Score=52.91 Aligned_cols=77 Identities=19% Similarity=0.102 Sum_probs=54.5
Q ss_pred CCCcEEEeCCCccHHHHHHHhc--CCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcC
Q 038343 22 SNKSCFEVGSGVGLVGICLAHV--KASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASES 99 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~--g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~ 99 (191)
+|.+|||++||.|.=+..++.+ +...+++.|.++.-++.+++|++..+.. ++.+...|.......
T Consensus 94 ~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g~~-------------~~~~~~~d~~~~~~~ 160 (293)
T d2b9ea1 94 PGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVS-------------CCELAEEDFLAVSPS 160 (293)
T ss_dssp TTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCC-------------SEEEEECCGGGSCTT
T ss_pred ccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcCcc-------------ceeeeehhhhhhccc
Confidence 6789999999999766655543 3348999999999999999999998864 355555544332211
Q ss_pred CCCCCCCCEEEE
Q 038343 100 GLSAFVPEIILG 111 (191)
Q Consensus 100 ~~~~~~fDvIi~ 111 (191)
.....+||.|++
T Consensus 161 ~~~~~~fD~VL~ 172 (293)
T d2b9ea1 161 DPRYHEVHYILL 172 (293)
T ss_dssp CGGGTTEEEEEE
T ss_pred ccccceeeEEee
Confidence 112246999986
|
| >d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RNA methyltransferase FtsJ domain: RNA methyltransferase FtsJ species: Escherichia coli [TaxId: 562]
Probab=97.31 E-value=0.00047 Score=48.57 Aligned_cols=110 Identities=10% Similarity=0.038 Sum_probs=69.7
Q ss_pred cHHHHHHHHhhCCCCCCCCcEEEeCCCccHHHHHHHhc-CC-CeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCC
Q 038343 6 SSLLLSEFILSFPEIFSNKSCFEVGSGVGLVGICLAHV-KA-SKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDP 83 (191)
Q Consensus 6 ~a~~L~~~l~~~~~~~~~~~VLElG~GtG~~~~~la~~-g~-~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~ 83 (191)
++..|.+...+..-..++.+||||||+.|..+.++.+. +. ..++++|..+. ..+
T Consensus 6 aafKL~EI~~k~~l~k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~-----------~~i------------- 61 (180)
T d1ej0a_ 6 AWFKLDEIQQSDKLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPM-----------DPI------------- 61 (180)
T ss_dssp HHHHHHHHHHHHCCCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCC-----------CCC-------------
T ss_pred HHHHHHHHHHHhCccCCCCeEEEEeccCCcceEEEEeeccccceEEEeecccc-----------ccc-------------
Confidence 57778776655444457889999999999999877653 32 48999997541 111
Q ss_pred CeeEEEeecCCCCCcC-----CCCCCCCCEEEEcccccCCC------------ChHHHHHHHHHHhccCCCCcc
Q 038343 84 NVVQCVHLPWESASES-----GLSAFVPEIILGADILYDRS------------CFPDLVRILAILLNRRKSVSS 140 (191)
Q Consensus 84 ~~i~~~~ldw~~~~~~-----~~~~~~fDvIi~~d~ly~~~------------~~~~ll~~l~~ll~~~g~~~~ 140 (191)
..+.+...+..+.... .....++|+|++ |.-.+.. .....+....++|++||...+
T Consensus 62 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~DlVlS-D~ap~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~ 134 (180)
T d1ej0a_ 62 VGVDFLQGDFRDELVMKALLERVGDSKVQVVMS-DMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVV 134 (180)
T ss_dssp TTEEEEESCTTSHHHHHHHHHHHTTCCEEEEEE-CCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred CCceEeecccccchhhhhhhhhccCcceeEEEe-cccchhcccchhHHHHHHHHHHHHHHhhhhccCCCCcEEE
Confidence 2355566665443211 123467999987 4333322 244567777889999985443
|
| >d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: M.EcoKI species: Escherichia coli [TaxId: 562]
Probab=96.87 E-value=0.00036 Score=57.17 Aligned_cols=123 Identities=8% Similarity=-0.100 Sum_probs=73.6
Q ss_pred HHHHHHhhCCCCCCCCcEEEeCCCccHHHHHHHhc----C---------------CCeEEEEcCChHHHHHHHHHHHHhc
Q 038343 9 LLSEFILSFPEIFSNKSCFEVGSGVGLVGICLAHV----K---------------ASKVTLTDGDHLTLANMRSNLELNQ 69 (191)
Q Consensus 9 ~L~~~l~~~~~~~~~~~VLElG~GtG~~~~~la~~----g---------------~~~v~~tD~~~~~l~~~~~n~~~n~ 69 (191)
.+++++.......++.+|+|-.||+|.+-+.+.+. . ...+++.|+++.+...++.|+-.++
T Consensus 151 ~Iv~~mv~ll~~~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~nl~l~~ 230 (524)
T d2ar0a1 151 PLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHD 230 (524)
T ss_dssp HHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTT
T ss_pred chhHhhhhcccCccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHHHHHHhhc
Confidence 34455544333345679999999999766544331 1 1268999999999999999988776
Q ss_pred CCCCcccccccCCCCeeEEEeecCCCCCc-CCCCCCCCCEEEEcccccCCCC--------------hHHHHHHHHHHhcc
Q 038343 70 LSTDTSLLESYEDPNVVQCVHLPWESASE-SGLSAFVPEIILGADILYDRSC--------------FPDLVRILAILLNR 134 (191)
Q Consensus 70 ~~~~~~~~~~~~~~~~i~~~~ldw~~~~~-~~~~~~~fDvIi~~d~ly~~~~--------------~~~ll~~l~~ll~~ 134 (191)
....... .- .+.+..... ......+||+|+++.++-.... .-.++..+.+.|++
T Consensus 231 ~~~~i~~--------~~---~~~~~~~l~~d~~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~ 299 (524)
T d2ar0a1 231 IEGNLDH--------GG---AIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHP 299 (524)
T ss_dssp CCCBGGG--------TB---SEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEE
T ss_pred ccccccc--------cc---hhhhhhhhhhcccccccceeEEecCCccccccccchhhhccccccccHHHHHHHHHhccc
Confidence 4321100 00 011111110 0112357999999876632211 22478888899999
Q ss_pred CCCCcccc
Q 038343 135 RKSVSSSR 142 (191)
Q Consensus 135 ~g~~~~~~ 142 (191)
+|+...+.
T Consensus 300 gGr~aiIl 307 (524)
T d2ar0a1 300 GGRAAVVV 307 (524)
T ss_dssp EEEEEEEE
T ss_pred cCcEEEEE
Confidence 98766543
|
| >d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Transcription factor sc-mtTFB species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.68 E-value=0.002 Score=49.36 Aligned_cols=44 Identities=9% Similarity=0.160 Sum_probs=37.0
Q ss_pred CCCcEEEeCCCccHHHHHHHhc-CCCeEEEEcCChHHHHHHHHHH
Q 038343 22 SNKSCFEVGSGVGLVGICLAHV-KASKVTLTDGDHLTLANMRSNL 65 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~-g~~~v~~tD~~~~~l~~~~~n~ 65 (191)
++..|||+|.|.|.++..+... ++++|+++|.++...+.+++..
T Consensus 43 ~~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~~~~~L~~~~ 87 (322)
T d1i4wa_ 43 EELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKF 87 (322)
T ss_dssp TTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhc
Confidence 5668999999999999877664 5679999999999998887653
|
| >d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CmcI-like domain: Cephalosporin hydroxylase CmcI species: Streptomyces clavuligerus [TaxId: 1901]
Probab=96.41 E-value=0.0012 Score=48.24 Aligned_cols=95 Identities=13% Similarity=-0.008 Sum_probs=53.7
Q ss_pred CCCcEEEeCCCccHHHHHHHh----cC-CCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCC
Q 038343 22 SNKSCFEVGSGVGLVGICLAH----VK-ASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESA 96 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~----~g-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~ 96 (191)
+.++|||+|++.|..+++++. .+ ..+++++|+++...... .. ...++.+...|-.+.
T Consensus 80 KPk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~-----~~-------------~~~~I~~i~gDs~~~ 141 (232)
T d2bm8a1 80 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIP-----AS-------------DMENITLHQGDCSDL 141 (232)
T ss_dssp CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCC-----GG-------------GCTTEEEEECCSSCS
T ss_pred CCCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhh-----hc-------------cccceeeeecccccH
Confidence 456899999999976665553 22 34899999976422110 00 114577777775443
Q ss_pred Cc-CCCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCC
Q 038343 97 SE-SGLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRK 136 (191)
Q Consensus 97 ~~-~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g 136 (191)
.. ..+....+|+|+. |--|.....-.-+ .+..+|++||
T Consensus 142 ~~~~~l~~~~~dlIfI-D~~H~~~~v~~~~-~~~~lLk~GG 180 (232)
T d2bm8a1 142 TTFEHLREMAHPLIFI-DNAHANTFNIMKW-AVDHLLEEGD 180 (232)
T ss_dssp GGGGGGSSSCSSEEEE-ESSCSSHHHHHHH-HHHHTCCTTC
T ss_pred HHHHHHHhcCCCEEEE-cCCcchHHHHHHH-HHhcccCcCC
Confidence 22 1234456888776 3323322111112 2457888886
|
| >d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HaeIII species: Haemophilus aegyptius [TaxId: 197575]
Probab=96.32 E-value=0.01 Score=44.48 Aligned_cols=42 Identities=14% Similarity=0.108 Sum_probs=35.3
Q ss_pred CcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHH
Q 038343 24 KSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNL 65 (191)
Q Consensus 24 ~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~ 65 (191)
++||||.||.|.+++-+.+.|...+.++|+++.+.+..+.|.
T Consensus 1 mk~~~lF~G~Gg~~~gl~~aG~~~~~a~e~d~~a~~~~~~N~ 42 (324)
T d1dcta_ 1 MNLISLFSGAGGLDLGFQKAGFRIICANEYDKSIWKTYESNH 42 (324)
T ss_dssp CEEEEESCSSCHHHHHHHHHTCEEEEEEECCHHHHHHHHHHC
T ss_pred CeEEEeCcCcCHHHHHHHHCCCEEEEEEeCCHHHHHHHHHHC
Confidence 479999999998888777778877889999998887777663
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=96.29 E-value=0.0047 Score=44.89 Aligned_cols=45 Identities=13% Similarity=0.055 Sum_probs=40.5
Q ss_pred CCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHH
Q 038343 21 FSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLE 66 (191)
Q Consensus 21 ~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~ 66 (191)
.+|..|||-.||+|.+++++.++|- +.+++|++++-++.+++.++
T Consensus 211 ~~gd~VlDpF~GSGTT~~aa~~~~R-~~ig~El~~~y~~~a~~Rl~ 255 (256)
T d1g60a_ 211 NPNDLVLDCFMGSGTTAIVAKKLGR-NFIGCDMNAEYVNQANFVLN 255 (256)
T ss_dssp CTTCEEEESSCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHH
T ss_pred CCCCEEEECCCCchHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHc
Confidence 3677999999999999999999985 99999999999999988764
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=96.02 E-value=0.0071 Score=44.45 Aligned_cols=58 Identities=10% Similarity=0.077 Sum_probs=46.3
Q ss_pred HHHHHHhhCCCCCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHh
Q 038343 9 LLSEFILSFPEIFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELN 68 (191)
Q Consensus 9 ~L~~~l~~~~~~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n 68 (191)
.|.+++.... ..+|..|||--+|+|.+++++.++|- +++++|++++..+.+++.+...
T Consensus 195 ~L~~~~I~~~-s~~gdiVLDpF~GSGTT~~Aa~~lgR-~~ig~El~~~y~~~a~~Ri~~~ 252 (279)
T d1eg2a_ 195 AVIERLVRAL-SHPGSTVLDFFAGSGVTARVAIQEGR-NSICTDAAPVFKEYYQKQLTFL 252 (279)
T ss_dssp HHHHHHHHHH-SCTTCEEEETTCTTCHHHHHHHHHTC-EEEEEESSTHHHHHHHHHHHHC
T ss_pred hHHHHHHHhh-cCCCCEEEecCCCCcHHHHHHHHhCC-eEEEEeCCHHHHHHHHHHHHHh
Confidence 3444444432 23778999999999999999999975 9999999999999999887653
|
| >d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.PvuII N4 cytosine-specific DNA methyltransferase species: Proteus vulgaris [TaxId: 585]
Probab=95.80 E-value=0.004 Score=46.66 Aligned_cols=45 Identities=9% Similarity=-0.017 Sum_probs=40.0
Q ss_pred CCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHH
Q 038343 22 SNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLEL 67 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~ 67 (191)
+|..|||--||+|.+++++..+|- +.+++|++++.++.+++.+..
T Consensus 250 ~gdiVlDpF~GSGTT~~AA~~lgR-~~Ig~El~~~y~~~a~~Rl~~ 294 (320)
T d1booa_ 250 PDDLVVDIFGGSNTTGLVAERESR-KWISFEMKPEYVAASAFRFLD 294 (320)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHGGGSC
T ss_pred CCCEEEecCCCCcHHHHHHHHcCC-cEEEEeCCHHHHHHHHHHHHh
Confidence 678999999999999999999986 999999999999988766544
|
| >d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HhaI species: Haemophilus haemolyticus [TaxId: 726]
Probab=95.79 E-value=0.0097 Score=44.91 Aligned_cols=46 Identities=15% Similarity=0.155 Sum_probs=40.3
Q ss_pred CCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHH
Q 038343 20 IFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNL 65 (191)
Q Consensus 20 ~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~ 65 (191)
...+.+||||.||.|..++.+.+.|..-+.+.|+++.+++..+.|.
T Consensus 8 ~~~~lrv~~lFsG~Gg~~~gl~~aG~~~v~a~e~d~~a~~~~~~N~ 53 (327)
T d2c7pa1 8 QLTGLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEMNF 53 (327)
T ss_dssp TTTTCEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHHHHHHHHH
T ss_pred cCCCCeEEEECccccHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHC
Confidence 3467899999999999999888888877888999999999888875
|
| >d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermus thermophilus [TaxId: 274]
Probab=95.65 E-value=0.0085 Score=41.91 Aligned_cols=103 Identities=13% Similarity=0.040 Sum_probs=63.0
Q ss_pred CCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcC-
Q 038343 21 FSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASES- 99 (191)
Q Consensus 21 ~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~- 99 (191)
.++..++|..+|.|--+..+...+. +|++.|.++.+++.++.. .. .++.+......+....
T Consensus 17 ~~g~~~vD~T~G~GGhs~~iL~~~~-~viaiD~D~~ai~~a~~~---~~--------------~~~~~~~~~f~~~~~~l 78 (182)
T d1wg8a2 17 RPGGVYVDATLGGAGHARGILERGG-RVIGLDQDPEAVARAKGL---HL--------------PGLTVVQGNFRHLKRHL 78 (182)
T ss_dssp CTTCEEEETTCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHT---CC--------------TTEEEEESCGGGHHHHH
T ss_pred CCCCEEEEeCCCCcHHHHHHhcccC-cEEEEhhhhhHHHHHhhc---cc--------------cceeEeehHHHHHHHHH
Confidence 4778999999999977775555554 899999999999877642 11 2345555443332110
Q ss_pred -CCCCCCCCEEEEccccc------CC----CChHHHHHHHHHHhccCCCCcccc
Q 038343 100 -GLSAFVPEIILGADILY------DR----SCFPDLVRILAILLNRRKSVSSSR 142 (191)
Q Consensus 100 -~~~~~~fDvIi~~d~ly------~~----~~~~~ll~~l~~ll~~~g~~~~~~ 142 (191)
......+|.|+. |+=+ ++ ......|.....+++++|....+.
T Consensus 79 ~~~~~~~vdgIl~-DLGvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ii~ 131 (182)
T d1wg8a2 79 AALGVERVDGILA-DLGVSSFHLDDPSDELNALKEFLEQAAEVLAPGGRLVVIA 131 (182)
T ss_dssp HHTTCSCEEEEEE-ECSCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred HHcCCCccCEEEE-EccCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEEEEe
Confidence 112346888876 2211 10 123446777788889887544433
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=95.17 E-value=0.039 Score=37.95 Aligned_cols=48 Identities=29% Similarity=0.537 Sum_probs=36.0
Q ss_pred hCCCCCCCCcEEEeCCC-ccHHHHHHHh-cCCCeEEEEcCChHHHHHHHH
Q 038343 16 SFPEIFSNKSCFEVGSG-VGLVGICLAH-VKASKVTLTDGDHLTLANMRS 63 (191)
Q Consensus 16 ~~~~~~~~~~VLElG~G-tG~~~~~la~-~g~~~v~~tD~~~~~l~~~~~ 63 (191)
+.....+|.+||=+|+| .|...+.+++ .|+++|+++|.+++-++.+++
T Consensus 22 ~~~~~~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~ 71 (182)
T d1vj0a2 22 EYPESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEE 71 (182)
T ss_dssp TCSSCCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHH
T ss_pred HHhCCCCCCEEEEECCCccchhheeccccccccccccccccccccccccc
Confidence 34455578999999998 5766664444 677789999999988877753
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Probab=95.06 E-value=0.033 Score=38.77 Aligned_cols=53 Identities=11% Similarity=-0.048 Sum_probs=41.6
Q ss_pred hCCCCCCCCcEEEeCCCcc---HHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhc
Q 038343 16 SFPEIFSNKSCFEVGSGVG---LVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQ 69 (191)
Q Consensus 16 ~~~~~~~~~~VLElG~GtG---~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~ 69 (191)
.....+++++||=.|++.| .++..+++.|+ +|++++.+++-++.+.+.+..+.
T Consensus 16 ~~~~~l~gK~vlItGasgGIG~~ia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~ 71 (191)
T d1luaa1 16 AAGGSVKGKKAVVLAGTGPVGMRSAALLAGEGA-EVVLCGRKLDKAQAAADSVNKRF 71 (191)
T ss_dssp HTTSCCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHHH
T ss_pred HcCCCCCCCEEEEECCCHHHHHHHHHHHHhhcc-chhhcccchHHHHHHHHHHHhcc
Confidence 3456779999999998766 45556778887 89999999998888887776553
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=95.04 E-value=0.039 Score=37.87 Aligned_cols=47 Identities=23% Similarity=0.356 Sum_probs=35.7
Q ss_pred hCCCCCCCCcEEEeCCC-ccHHHHHHHh-cCCCeEEEEcCChHHHHHHH
Q 038343 16 SFPEIFSNKSCFEVGSG-VGLVGICLAH-VKASKVTLTDGDHLTLANMR 62 (191)
Q Consensus 16 ~~~~~~~~~~VLElG~G-tG~~~~~la~-~g~~~v~~tD~~~~~l~~~~ 62 (191)
+..+..++.+||=+||| .|+.++.+++ .|+++|+++|.+++-++.++
T Consensus 21 ~~a~~~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~ 69 (174)
T d1jqba2 21 ELADIEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAK 69 (174)
T ss_dssp HHTTCCTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHH
T ss_pred HHhCCCCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHH
Confidence 33455678899999998 4777775555 57778999999987776665
|
| >d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNMT2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.03 E-value=0.0075 Score=45.67 Aligned_cols=42 Identities=21% Similarity=0.169 Sum_probs=33.7
Q ss_pred CcEEEeCCCccHHHHHHHhcCCC--eEEEEcCChHHHHHHHHHH
Q 038343 24 KSCFEVGSGVGLVGICLAHVKAS--KVTLTDGDHLTLANMRSNL 65 (191)
Q Consensus 24 ~~VLElG~GtG~~~~~la~~g~~--~v~~tD~~~~~l~~~~~n~ 65 (191)
.+|+||.||.|.+++.+.+.|.. -+.++|+++.+.+..+.|.
T Consensus 3 ~kv~~lF~G~Gg~~~gl~~aG~~~~~~~a~E~~~~a~~~~~~n~ 46 (343)
T d1g55a_ 3 LRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNF 46 (343)
T ss_dssp EEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHC
T ss_pred CEEEEcCcCccHHHHHHHHcCCCCeEEEEEECCHHHHHHHHHHC
Confidence 58999999999888777666653 4779999999888877663
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=94.97 E-value=0.051 Score=37.34 Aligned_cols=58 Identities=17% Similarity=0.149 Sum_probs=41.0
Q ss_pred cHHHHHHHH-hhCCCCCCCCcEEEeCCC-ccHHHHHH-HhcCCCeEEEEcCChHHHHHHHH
Q 038343 6 SSLLLSEFI-LSFPEIFSNKSCFEVGSG-VGLVGICL-AHVKASKVTLTDGDHLTLANMRS 63 (191)
Q Consensus 6 ~a~~L~~~l-~~~~~~~~~~~VLElG~G-tG~~~~~l-a~~g~~~v~~tD~~~~~l~~~~~ 63 (191)
|+...+... .+..+..++.+|+=.|+| .|+.++.+ ...|+.+|+++|.+++-++.+++
T Consensus 12 Ca~~T~~~Av~~~~~~~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~ 72 (176)
T d1d1ta2 12 CGFSTGYGAAVKTGKVKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMA 72 (176)
T ss_dssp THHHHHHHHHHTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH
T ss_pred hHHHHHHHHHHHhhCCCCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHh
Confidence 444444433 344456688899999998 56666644 44677799999999998887764
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=94.97 E-value=0.031 Score=39.21 Aligned_cols=104 Identities=13% Similarity=0.055 Sum_probs=62.9
Q ss_pred CCCCCCCCcEEEeCCCc-cHHHHHHHh-cCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCC
Q 038343 17 FPEIFSNKSCFEVGSGV-GLVGICLAH-VKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWE 94 (191)
Q Consensus 17 ~~~~~~~~~VLElG~Gt-G~~~~~la~-~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~ 94 (191)
.....+|.+||-+|||. |+.+..+++ .|+.+|+++|.++.-++.+++ .+.. . ..+-.
T Consensus 20 ~a~v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~----~Ga~---------------~--~~~~~ 78 (195)
T d1kola2 20 TAGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKA----QGFE---------------I--ADLSL 78 (195)
T ss_dssp HTTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH----TTCE---------------E--EETTS
T ss_pred HhCCCCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhh----cccc---------------E--EEeCC
Confidence 34556888999999995 667665554 678899999999888877753 2211 0 01100
Q ss_pred CCC-c----CCCCCCCCCEEEEccc---------ccCCCChHHHHHHHHHHhccCCCCccc
Q 038343 95 SAS-E----SGLSAFVPEIILGADI---------LYDRSCFPDLVRILAILLNRRKSVSSS 141 (191)
Q Consensus 95 ~~~-~----~~~~~~~fDvIi~~d~---------ly~~~~~~~ll~~l~~ll~~~g~~~~~ 141 (191)
+.. . +......+|+++-+-- ..........++...++++|+|+...+
T Consensus 79 ~~~~~~~i~~~t~g~g~D~vid~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~ 139 (195)
T d1kola2 79 DTPLHEQIAALLGEPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIP 139 (195)
T ss_dssp SSCHHHHHHHHHSSSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEEC
T ss_pred CcCHHHHHHHHhCCCCcEEEEECccccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEe
Confidence 000 0 0012346888883211 111223457889999999999876543
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Probab=94.77 E-value=0.069 Score=38.97 Aligned_cols=81 Identities=14% Similarity=0.024 Sum_probs=56.1
Q ss_pred CCCCcEEEeCCCcc---HHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCC
Q 038343 21 FSNKSCFEVGSGVG---LVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESAS 97 (191)
Q Consensus 21 ~~~~~VLElG~GtG---~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~ 97 (191)
++|+++|=.|+..| .++..+++.|+ +|+++|.+++-++.+.+.+...+ ..+.+...|..+..
T Consensus 4 L~gK~alITGas~GIG~aia~~la~~G~-~V~i~~r~~~~l~~~~~~~~~~~--------------~~~~~~~~D~s~~~ 68 (258)
T d1ae1a_ 4 LKGTTALVTGGSKGIGYAIVEELAGLGA-RVYTCSRNEKELDECLEIWREKG--------------LNVEGSVCDLLSRT 68 (258)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT--------------CCEEEEECCTTCHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcC--------------CCceEEEeecCCHH
Confidence 57899999999877 34556777888 89999999988888877776655 23556677776543
Q ss_pred cC--------CCCCCCCCEEEEccccc
Q 038343 98 ES--------GLSAFVPEIILGADILY 116 (191)
Q Consensus 98 ~~--------~~~~~~fDvIi~~d~ly 116 (191)
.- +...+..|+++.+--+.
T Consensus 69 ~~~~~~~~~~~~~~g~idilinnag~~ 95 (258)
T d1ae1a_ 69 ERDKLMQTVAHVFDGKLNILVNNAGVV 95 (258)
T ss_dssp HHHHHHHHHHHHTTSCCCEEEECCCCC
T ss_pred HHHHHHHHHHHHhCCCcEEEecccccc
Confidence 21 01235688888644333
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=94.75 E-value=0.0068 Score=41.79 Aligned_cols=94 Identities=14% Similarity=0.117 Sum_probs=59.5
Q ss_pred CCCcEEEeCCC-ccHHHH-HHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcC
Q 038343 22 SNKSCFEVGSG-VGLVGI-CLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASES 99 (191)
Q Consensus 22 ~~~~VLElG~G-tG~~~~-~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~ 99 (191)
+..+|+=||+| .|..++ .+..+|+ .|++.|.+++.++.++.....+. .....+- +...+
T Consensus 31 ~pa~V~ViGaGvaG~~A~~~A~~lGA-~V~~~D~~~~~l~~l~~~~~~~~-----------------~~~~~~~-~~l~~ 91 (168)
T d1pjca1 31 KPGKVVILGGGVVGTEAAKMAVGLGA-QVQIFDINVERLSYLETLFGSRV-----------------ELLYSNS-AEIET 91 (168)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHGGGS-----------------EEEECCH-HHHHH
T ss_pred CCcEEEEECCChHHHHHHHHHhhCCC-EEEEEeCcHHHHHHHHHhhcccc-----------------eeehhhh-hhHHH
Confidence 56799999999 677777 4556787 99999999999888765443221 1111100 00000
Q ss_pred CCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCC
Q 038343 100 GLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRK 136 (191)
Q Consensus 100 ~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g 136 (191)
.+ ...|+||.+=.+--...+.-+-+.+-+.+|||.
T Consensus 92 ~~--~~aDivI~aalipG~~aP~lIt~~mv~~Mk~GS 126 (168)
T d1pjca1 92 AV--AEADLLIGAVLVPGRRAPILVPASLVEQMRTGS 126 (168)
T ss_dssp HH--HTCSEEEECCCCTTSSCCCCBCHHHHTTSCTTC
T ss_pred hh--ccCcEEEEeeecCCcccCeeecHHHHhhcCCCc
Confidence 11 258999997666554445555667777788873
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.54 E-value=0.026 Score=38.41 Aligned_cols=45 Identities=16% Similarity=0.138 Sum_probs=34.6
Q ss_pred CCCCCCCcEEEeCCC-ccHHHHHHH-hcCCCeEEEEcCChHHHHHHHH
Q 038343 18 PEIFSNKSCFEVGSG-VGLVGICLA-HVKASKVTLTDGDHLTLANMRS 63 (191)
Q Consensus 18 ~~~~~~~~VLElG~G-tG~~~~~la-~~g~~~v~~tD~~~~~l~~~~~ 63 (191)
....++.+||-+|+| .|+..+.++ ..|+ +|+++|.+++-++.+++
T Consensus 23 ~~~~~g~~vlI~GaG~vG~~a~q~ak~~G~-~vi~~~~~~~k~~~a~~ 69 (168)
T d1piwa2 23 NGCGPGKKVGIVGLGGIGSMGTLISKAMGA-ETYVISRSSRKREDAMK 69 (168)
T ss_dssp TTCSTTCEEEEECCSHHHHHHHHHHHHHTC-EEEEEESSSTTHHHHHH
T ss_pred hCcCCCCEEEEECCCCcchhHHHHhhhccc-cccccccchhHHHHhhc
Confidence 445688999999998 777777555 4677 89999999887777654
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=94.09 E-value=0.07 Score=35.92 Aligned_cols=44 Identities=23% Similarity=0.205 Sum_probs=33.0
Q ss_pred CCCCCCCcEEEeCCC-ccHHHHHHHh-cCCCeEEEEcCChHHHHHHH
Q 038343 18 PEIFSNKSCFEVGSG-VGLVGICLAH-VKASKVTLTDGDHLTLANMR 62 (191)
Q Consensus 18 ~~~~~~~~VLElG~G-tG~~~~~la~-~g~~~v~~tD~~~~~l~~~~ 62 (191)
....++.+||=+|+| .|...+.+++ .|+ +|+++|.++.-++.++
T Consensus 23 ~~~~~g~~VlV~GaG~vG~~~~~~ak~~G~-~Vi~~~~~~~~~~~a~ 68 (166)
T d1llua2 23 TNARPGQWVAISGIGGLGHVAVQYARAMGL-HVAAIDIDDAKLELAR 68 (166)
T ss_dssp HTCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHH
T ss_pred hCCCCCCEEEEeeccccHHHHHHHHHHcCC-ccceecchhhHHHhhh
Confidence 445578889999998 6666665555 565 9999999988777665
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=94.07 E-value=0.055 Score=37.07 Aligned_cols=48 Identities=17% Similarity=0.234 Sum_probs=36.9
Q ss_pred hCCCCCCCCcEEEeCCC-ccHHHHHHH-hcCCCeEEEEcCChHHHHHHHH
Q 038343 16 SFPEIFSNKSCFEVGSG-VGLVGICLA-HVKASKVTLTDGDHLTLANMRS 63 (191)
Q Consensus 16 ~~~~~~~~~~VLElG~G-tG~~~~~la-~~g~~~v~~tD~~~~~l~~~~~ 63 (191)
+.....++.+||=+||| .|+.++.++ ..|+.+|+++|.+++-++.+++
T Consensus 21 ~~a~~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~ 70 (174)
T d1p0fa2 21 NTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIE 70 (174)
T ss_dssp TTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHH
T ss_pred HhhCCCCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHH
Confidence 44556788999999998 556666444 4688899999999888877753
|
| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=93.91 E-value=0.07 Score=38.87 Aligned_cols=80 Identities=15% Similarity=0.144 Sum_probs=54.5
Q ss_pred CCCCcEEEeCCCccH---HHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCC
Q 038343 21 FSNKSCFEVGSGVGL---VGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESAS 97 (191)
Q Consensus 21 ~~~~~VLElG~GtG~---~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~ 97 (191)
++|+++|=-|++.|+ ++..+++.|+ +|+++|.+++.++.+.+.++..+ .++.+...|..+..
T Consensus 9 L~gK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~~~~~~~~l~~~g--------------~~~~~~~~Dvs~~~ 73 (255)
T d1fmca_ 9 LDGKCAIITGAGAGIGKEIAITFATAGA-SVVVSDINADAANHVVDEIQQLG--------------GQAFACRCDITSEQ 73 (255)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHTTTC-EEEEEESCHHHHHHHHHHHHHTT--------------CCEEEEECCTTCHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcC--------------CcEEEEEccCCCHH
Confidence 578999988888773 4446777888 89999999999888887776654 24556677766542
Q ss_pred cCC-------CCCCCCCEEEEcccc
Q 038343 98 ESG-------LSAFVPEIILGADIL 115 (191)
Q Consensus 98 ~~~-------~~~~~fDvIi~~d~l 115 (191)
.-. -.-++.|+++.+--+
T Consensus 74 ~~~~~~~~~~~~~g~iDilvnnAG~ 98 (255)
T d1fmca_ 74 ELSALADFAISKLGKVDILVNNAGG 98 (255)
T ss_dssp HHHHHHHHHHHHHSSCCEEEECCCC
T ss_pred HHHHHHHHHHHHcCCCCEeeeCCcC
Confidence 210 011468888875433
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=93.86 E-value=0.072 Score=36.48 Aligned_cols=102 Identities=14% Similarity=0.097 Sum_probs=60.8
Q ss_pred hCCCCCCCCcEEEeCCC-ccHHHHHHHh-cCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecC
Q 038343 16 SFPEIFSNKSCFEVGSG-VGLVGICLAH-VKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPW 93 (191)
Q Consensus 16 ~~~~~~~~~~VLElG~G-tG~~~~~la~-~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw 93 (191)
+.....++.+||=+||| .|+.++.+++ .|+..|+++|.+++-++.+++ .+.. .+....-
T Consensus 22 ~~a~v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~----~Ga~---------------~~i~~~~ 82 (174)
T d1e3ia2 22 NTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKA----LGAT---------------DCLNPRE 82 (174)
T ss_dssp TTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH----TTCS---------------EEECGGG
T ss_pred HhhCCCCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHH----hCCC---------------cccCCcc
Confidence 34555688899999999 5888885555 688789999999876666653 3321 1111100
Q ss_pred CCCCc----CCCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCcccc
Q 038343 94 ESASE----SGLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVSSSR 142 (191)
Q Consensus 94 ~~~~~----~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~~~~ 142 (191)
.+... .....+.+|+|+- ..-.+..+....++++++++...+.
T Consensus 83 ~~~~~~~~~~~~~~~G~d~vie------~~G~~~~~~~a~~~~~~g~G~~v~v 129 (174)
T d1e3ia2 83 LDKPVQDVITELTAGGVDYSLD------CAGTAQTLKAAVDCTVLGWGSCTVV 129 (174)
T ss_dssp CSSCHHHHHHHHHTSCBSEEEE------SSCCHHHHHHHHHTBCTTTCEEEEC
T ss_pred chhhhhhhHhhhhcCCCcEEEE------ecccchHHHHHHHHhhcCCeEEEec
Confidence 00000 0012346888763 2345667888888888873333333
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.85 E-value=0.17 Score=36.77 Aligned_cols=84 Identities=10% Similarity=0.033 Sum_probs=58.5
Q ss_pred CCCCCcEEEeCCCccH---HHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCC
Q 038343 20 IFSNKSCFEVGSGVGL---VGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESA 96 (191)
Q Consensus 20 ~~~~~~VLElG~GtG~---~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~ 96 (191)
.++++.+|=-|++.|+ ++..+++.|+ +|+++|.+++-++.+.+.++..+.. .++.....|..+.
T Consensus 7 ~lk~Kv~lITGas~GIG~aiA~~la~~G~-~Vv~~~r~~~~l~~~~~~l~~~~~~------------~~~~~~~~Dls~~ 73 (257)
T d1xg5a_ 7 RWRDRLALVTGASGGIGAAVARALVQQGL-KVVGCARTVGNIEELAAECKSAGYP------------GTLIPYRCDLSNE 73 (257)
T ss_dssp GGTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCS------------SEEEEEECCTTCH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCC------------ceEEEEEccCCCH
Confidence 4789999999999883 4446677888 8999999999998888777765432 3566777887654
Q ss_pred CcCC-------CCCCCCCEEEEccccc
Q 038343 97 SESG-------LSAFVPEIILGADILY 116 (191)
Q Consensus 97 ~~~~-------~~~~~fDvIi~~d~ly 116 (191)
.... -.-++.|++|.+--.+
T Consensus 74 ~~v~~~v~~~~~~~g~iD~lVnnAg~~ 100 (257)
T d1xg5a_ 74 EDILSMFSAIRSQHSGVDICINNAGLA 100 (257)
T ss_dssp HHHHHHHHHHHHHHCCCSEEEECCCCC
T ss_pred HHHHHHHHHHHHhcCCCCEEEeccccc
Confidence 3210 0125789988754333
|
| >d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Putative shikimate dehydrogenase YdiB species: Escherichia coli [TaxId: 562]
Probab=93.74 E-value=0.043 Score=37.87 Aligned_cols=50 Identities=14% Similarity=0.065 Sum_probs=34.1
Q ss_pred HhhCCCCCCCCcEEEeCCC-cc-HHHHHHHhcCCCeEEEEcCChHHHHHHHH
Q 038343 14 ILSFPEIFSNKSCFEVGSG-VG-LVGICLAHVKASKVTLTDGDHLTLANMRS 63 (191)
Q Consensus 14 l~~~~~~~~~~~VLElG~G-tG-~~~~~la~~g~~~v~~tD~~~~~l~~~~~ 63 (191)
+.......++++||=|||| +| .....+.+.|+++++..+.+++.++.++.
T Consensus 9 l~~~~~~l~~k~vlIlGaGGaarai~~al~~~g~~~i~i~nR~~~~~~~~~~ 60 (182)
T d1vi2a1 9 IKESGFDIKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALA 60 (182)
T ss_dssp HHHTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHH
T ss_pred HHHcCCCcCCCEEEEECCcHHHHHHHHHHhhcCCceEeeeccchHHHHHHHH
Confidence 3334345688999999999 33 22335666788899999988766655443
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Probab=93.74 E-value=0.16 Score=36.96 Aligned_cols=78 Identities=14% Similarity=0.151 Sum_probs=54.7
Q ss_pred CCCCCcEEEeCCCccH---HHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCC
Q 038343 20 IFSNKSCFEVGSGVGL---VGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESA 96 (191)
Q Consensus 20 ~~~~~~VLElG~GtG~---~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~ 96 (191)
+++|+++|=-|++.|+ ++..+++.|+ +|+++|.+++.++.+.+.++..+ .++.....|..+.
T Consensus 2 rL~gK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~~~~~g--------------~~~~~~~~Dv~~~ 66 (260)
T d1zema1 2 KFNGKVCLVTGAGGNIGLATALRLAEEGT-AIALLDMNREALEKAEASVREKG--------------VEARSYVCDVTSE 66 (260)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTT--------------SCEEEEECCTTCH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcC--------------CcEEEEEccCCCH
Confidence 4688999999988773 4556778888 89999999999988887776554 2456667776654
Q ss_pred CcCC-------CCCCCCCEEEEc
Q 038343 97 SESG-------LSAFVPEIILGA 112 (191)
Q Consensus 97 ~~~~-------~~~~~fDvIi~~ 112 (191)
..-. -.-+..|++|.+
T Consensus 67 ~~v~~~~~~~~~~~g~iDilVnn 89 (260)
T d1zema1 67 EAVIGTVDSVVRDFGKIDFLFNN 89 (260)
T ss_dssp HHHHHHHHHHHHHHSCCCEEEEC
T ss_pred HHHHHHHHHHHHHhCCCCeehhh
Confidence 3110 012468988854
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.51 E-value=0.1 Score=37.87 Aligned_cols=90 Identities=12% Similarity=0.042 Sum_probs=59.1
Q ss_pred CCCcEEEeCCCcc---HHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCc
Q 038343 22 SNKSCFEVGSGVG---LVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASE 98 (191)
Q Consensus 22 ~~~~VLElG~GtG---~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~ 98 (191)
.|+.+|=-|++.| .++..+++.|+ +|+++|.+++.++.+...+...... .++.+...|..+...
T Consensus 2 ~GKvalITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~l~~~~~~------------~~~~~~~~Dv~~~~~ 68 (254)
T d2gdza1 2 NGKVALVTGAAQGIGRAFAEALLLKGA-KVALVDWNLEAGVQCKAALHEQFEP------------QKTLFIQCDVADQQQ 68 (254)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHTTTSCG------------GGEEEEECCTTSHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHhcCC------------CcEEEEEeecCCHHH
Confidence 5788888898877 34556677888 8999999998887776655332111 346667777765432
Q ss_pred CC-------CCCCCCCEEEEcccccCCCChHHH
Q 038343 99 SG-------LSAFVPEIILGADILYDRSCFPDL 124 (191)
Q Consensus 99 ~~-------~~~~~fDvIi~~d~ly~~~~~~~l 124 (191)
-. ..-++.|+++.+--+....+++..
T Consensus 69 v~~~~~~~~~~~G~iDilVnnAg~~~~~~~~~~ 101 (254)
T d2gdza1 69 LRDTFRKVVDHFGRLDILVNNAGVNNEKNWEKT 101 (254)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCCCCCSSSHHHH
T ss_pred HHHHHHHHHHHcCCcCeecccccccccccchhe
Confidence 10 012578999987666666655443
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=93.31 E-value=0.15 Score=36.85 Aligned_cols=83 Identities=12% Similarity=0.019 Sum_probs=55.9
Q ss_pred CCCCCCcEEEeCCCcc---HHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCC
Q 038343 19 EIFSNKSCFEVGSGVG---LVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWES 95 (191)
Q Consensus 19 ~~~~~~~VLElG~GtG---~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~ 95 (191)
..++++.+|=-|++.| .++..+++.|+ +|+++|.+++.++.+.+.++..+ .++.....|..+
T Consensus 6 f~lenKvalITGas~GIG~a~a~~la~~Ga-~V~~~~r~~~~l~~~~~~l~~~g--------------~~~~~~~~Dvt~ 70 (251)
T d2c07a1 6 YCGENKVALVTGAGRGIGREIAKMLAKSVS-HVICISRTQKSCDSVVDEIKSFG--------------YESSGYAGDVSK 70 (251)
T ss_dssp CCCSSCEEEEESTTSHHHHHHHHHHTTTSS-EEEEEESSHHHHHHHHHHHHTTT--------------CCEEEEECCTTC
T ss_pred cCCCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcC--------------CcEEEEEccCCC
Confidence 3457888888898877 33445667787 89999999999888887776554 245666777665
Q ss_pred CCcCC-------CCCCCCCEEEEccccc
Q 038343 96 ASESG-------LSAFVPEIILGADILY 116 (191)
Q Consensus 96 ~~~~~-------~~~~~fDvIi~~d~ly 116 (191)
...-. -.-++.|++|.+--+.
T Consensus 71 ~~~v~~~~~~~~~~~g~iDilvnnag~~ 98 (251)
T d2c07a1 71 KEEISEVINKILTEHKNVDILVNNAGIT 98 (251)
T ss_dssp HHHHHHHHHHHHHHCSCCCEEEECCCCC
T ss_pred HHHHHHHHHHHHHhcCCceeeeeccccc
Confidence 43210 1125789888754443
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.22 E-value=0.29 Score=35.20 Aligned_cols=83 Identities=14% Similarity=0.100 Sum_probs=58.3
Q ss_pred CCCCCCcEEEeCCCcc---HHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCC
Q 038343 19 EIFSNKSCFEVGSGVG---LVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWES 95 (191)
Q Consensus 19 ~~~~~~~VLElG~GtG---~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~ 95 (191)
..+.|+.+|=-|++.| .++..+++.|+ +|+++|.+++-++.+.+.+...+ .++.....|..+
T Consensus 3 ~~l~Gkv~lITGas~GIG~~ia~~la~~G~-~V~l~~r~~~~l~~~~~~~~~~~--------------~~~~~~~~Dvs~ 67 (244)
T d1yb1a_ 3 KSVTGEIVLITGAGHGIGRLTAYEFAKLKS-KLVLWDINKHGLEETAAKCKGLG--------------AKVHTFVVDCSN 67 (244)
T ss_dssp CCCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT--------------CCEEEEECCTTC
T ss_pred CCCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcC--------------CcEEEEEeeCCC
Confidence 3468889998899988 35556778888 89999999999998888876554 346667777665
Q ss_pred CCcCC-------CCCCCCCEEEEccccc
Q 038343 96 ASESG-------LSAFVPEIILGADILY 116 (191)
Q Consensus 96 ~~~~~-------~~~~~fDvIi~~d~ly 116 (191)
...-. ...+..|+++.+--+.
T Consensus 68 ~~~v~~~~~~i~~~~g~idilinnag~~ 95 (244)
T d1yb1a_ 68 REDIYSSAKKVKAEIGDVSILVNNAGVV 95 (244)
T ss_dssp HHHHHHHHHHHHHHTCCCSEEEECCCCC
T ss_pred HHHHHHHHHHHHHHcCCCceeEeecccc
Confidence 53210 1235688888654444
|
| >d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Levodione reductase species: Corynebacterium aquaticum [TaxId: 144185]
Probab=93.13 E-value=0.26 Score=35.70 Aligned_cols=80 Identities=15% Similarity=0.107 Sum_probs=55.5
Q ss_pred CCCCcEEEeCCCcc---HHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCC
Q 038343 21 FSNKSCFEVGSGVG---LVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESAS 97 (191)
Q Consensus 21 ~~~~~VLElG~GtG---~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~ 97 (191)
++|+.+|=-|++.| .++..+++.|+ +|+++|.+++.++.+...+...... .++.....|..+..
T Consensus 2 l~gK~alITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~l~~~~~~~~~~~~~------------~~~~~~~~Dvt~~~ 68 (258)
T d1iy8a_ 2 FTDRVVLITGGGSGLGRATAVRLAAEGA-KLSLVDVSSEGLEASKAAVLETAPD------------AEVLTTVADVSDEA 68 (258)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHCTT------------CCEEEEECCTTSHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhhCCC------------CeEEEEeccCCCHH
Confidence 57889999999877 35667788898 8999999999888887766554422 34666777776543
Q ss_pred cCC-------CCCCCCCEEEEcc
Q 038343 98 ESG-------LSAFVPEIILGAD 113 (191)
Q Consensus 98 ~~~-------~~~~~fDvIi~~d 113 (191)
.-. ..-++.|++|.+-
T Consensus 69 ~v~~~~~~~~~~~G~iDiLVnnA 91 (258)
T d1iy8a_ 69 QVEAYVTATTERFGRIDGFFNNA 91 (258)
T ss_dssp HHHHHHHHHHHHHSCCSEEEECC
T ss_pred HHHHHHHHHHHHhCCCCEEEECC
Confidence 210 0125789988643
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.01 E-value=0.11 Score=35.11 Aligned_cols=97 Identities=15% Similarity=0.197 Sum_probs=58.6
Q ss_pred CCCCCCcEEEeCCC-ccHHHHH-HHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCC
Q 038343 19 EIFSNKSCFEVGSG-VGLVGIC-LAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESA 96 (191)
Q Consensus 19 ~~~~~~~VLElG~G-tG~~~~~-la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~ 96 (191)
+..++.+||=+|+| .|...+. +...|+.+|+++|.++.-++.+++ .+.. .+...+-.+.
T Consensus 23 ~~~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~----~Ga~---------------~~~~~~~~~~ 83 (171)
T d1pl8a2 23 GVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKE----IGAD---------------LVLQISKESP 83 (171)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH----TTCS---------------EEEECSSCCH
T ss_pred CCCCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHH----hCCc---------------cccccccccc
Confidence 34578899999998 5555554 444688799999999887776653 2321 1111111110
Q ss_pred CcC-----CCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCcc
Q 038343 97 SES-----GLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVSS 140 (191)
Q Consensus 97 ~~~-----~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~~ 140 (191)
... ......+|+|+-+ .-.+..++...++++++|....
T Consensus 84 ~~~~~~~~~~~g~g~Dvvid~------~G~~~~~~~a~~~~~~gG~iv~ 126 (171)
T d1pl8a2 84 QEIARKVEGQLGCKPEVTIEC------TGAEASIQAGIYATRSGGTLVL 126 (171)
T ss_dssp HHHHHHHHHHHTSCCSEEEEC------SCCHHHHHHHHHHSCTTCEEEE
T ss_pred ccccccccccCCCCceEEEec------cCCchhHHHHHHHhcCCCEEEE
Confidence 000 0112468888742 2345678888999999976543
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=92.90 E-value=0.2 Score=33.78 Aligned_cols=109 Identities=14% Similarity=0.051 Sum_probs=63.6
Q ss_pred cHHHHHHHH-hhCCCCCCCCcEEEeCCC-ccHHHHH-HHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCC
Q 038343 6 SSLLLSEFI-LSFPEIFSNKSCFEVGSG-VGLVGIC-LAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYED 82 (191)
Q Consensus 6 ~a~~L~~~l-~~~~~~~~~~~VLElG~G-tG~~~~~-la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~ 82 (191)
|+...+... .+.....++.+||=.||| .|..++. +...|++.|+++|.+++-++.+++ .+..
T Consensus 11 ca~~Tay~al~~~~~~~~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~----lGa~----------- 75 (176)
T d2fzwa2 11 CGISTGYGAAVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKE----FGAT----------- 75 (176)
T ss_dssp THHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHH----HTCS-----------
T ss_pred cHHHHHHHHHHHhhCCCCCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHH----hCCc-----------
Confidence 333444433 334556688999999988 4455553 444688899999998887776653 3321
Q ss_pred CCeeEEEeecCCCCCc------CCCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCccc
Q 038343 83 PNVVQCVHLPWESASE------SGLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVSSS 141 (191)
Q Consensus 83 ~~~i~~~~ldw~~~~~------~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~~~ 141 (191)
. ..+..+... .....+.+|+|+-+ .-.+.+++....++++++....+
T Consensus 76 ----~--~i~~~~~~~~~~~~~~~~~~~g~D~vid~------~G~~~~~~~~~~~~~~g~~~~~v 128 (176)
T d2fzwa2 76 ----E--CINPQDFSKPIQEVLIEMTDGGVDYSFEC------IGNVKVMRAALEACHKGWGVSVV 128 (176)
T ss_dssp ----E--EECGGGCSSCHHHHHHHHTTSCBSEEEEC------SCCHHHHHHHHHTBCTTTCEEEE
T ss_pred ----E--EEeCCchhhHHHHHHHHHcCCCCcEeeec------CCCHHHHHHHHHhhcCCceeEEE
Confidence 1 111111000 00123468888742 23456778888888888665443
|
| >d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Escherichia coli [TaxId: 562]
Probab=92.68 E-value=0.42 Score=32.18 Aligned_cols=50 Identities=16% Similarity=0.168 Sum_probs=33.5
Q ss_pred HhhCCCCCCCCcEEEeCCCccHHHH--HHHhcCCCeEEEEcCChHHHHHHHHH
Q 038343 14 ILSFPEIFSNKSCFEVGSGVGLVGI--CLAHVKASKVTLTDGDHLTLANMRSN 64 (191)
Q Consensus 14 l~~~~~~~~~~~VLElG~GtG~~~~--~la~~g~~~v~~tD~~~~~l~~~~~n 64 (191)
|.+.....++++||=||||.-.-++ .+.+.|. +++.+..+.+-.+.+.+.
T Consensus 9 l~~~~~~~~~k~vlIlGaGGaarai~~al~~~g~-~i~I~nRt~~ka~~l~~~ 60 (170)
T d1nyta1 9 LERLSFIRPGLRILLIGAGGASRGVLLPLLSLDC-AVTITNRTVSRAEELAKL 60 (170)
T ss_dssp HHHHTCCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSHHHHHHHHHH
T ss_pred HHHcCCCCCCCEEEEECCcHHHHHHHHHhcccce-EEEeccchHHHHHHHHHH
Confidence 4333445688999999999443333 5566787 799999887655555443
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=92.66 E-value=0.12 Score=34.88 Aligned_cols=94 Identities=18% Similarity=0.185 Sum_probs=57.4
Q ss_pred CCCCCCcEEEeCCC-ccHHHHHHHh-cCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCC
Q 038343 19 EIFSNKSCFEVGSG-VGLVGICLAH-VKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESA 96 (191)
Q Consensus 19 ~~~~~~~VLElG~G-tG~~~~~la~-~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~ 96 (191)
+..++.+||=+||| .|+..+.+++ .|+ +|+++|.+++-++.+++ .+.. . ...+...
T Consensus 23 ~~~~g~~vlV~G~G~vG~~~~~~ak~~Ga-~vi~v~~~~~r~~~a~~----~ga~--------------~---~~~~~~~ 80 (170)
T d1e3ja2 23 GVQLGTTVLVIGAGPIGLVSVLAAKAYGA-FVVCTARSPRRLEVAKN----CGAD--------------V---TLVVDPA 80 (170)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHH----TTCS--------------E---EEECCTT
T ss_pred CCCCCCEEEEEcccccchhhHhhHhhhcc-cccccchHHHHHHHHHH----cCCc--------------E---EEecccc
Confidence 34578899999988 6666665554 566 89999999887777764 2211 0 1111111
Q ss_pred CcC---------CCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCcc
Q 038343 97 SES---------GLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVSS 140 (191)
Q Consensus 97 ~~~---------~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~~ 140 (191)
... ......+|+|+-+ ...+..++...++++++|....
T Consensus 81 ~~~~~~~~~~~~~~~g~g~D~vid~------~g~~~~~~~a~~~~~~~G~iv~ 127 (170)
T d1e3ja2 81 KEEESSIIERIRSAIGDLPNVTIDC------SGNEKCITIGINITRTGGTLML 127 (170)
T ss_dssp TSCHHHHHHHHHHHSSSCCSEEEEC------SCCHHHHHHHHHHSCTTCEEEE
T ss_pred ccccchhhhhhhcccccCCceeeec------CCChHHHHHHHHHHhcCCceEE
Confidence 100 0113468888742 2345677888889999986443
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=92.49 E-value=0.17 Score=34.27 Aligned_cols=100 Identities=14% Similarity=0.103 Sum_probs=60.5
Q ss_pred hhCCCCCCCCcEEEeCCC-ccHHHHHHH-hcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeec
Q 038343 15 LSFPEIFSNKSCFEVGSG-VGLVGICLA-HVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLP 92 (191)
Q Consensus 15 ~~~~~~~~~~~VLElG~G-tG~~~~~la-~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ld 92 (191)
.+..+..++.+||=+||| .|...+.++ ..|+..|+.+|.++.-++.+++ .+.. .+...+
T Consensus 21 ~~~~~~~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~----~Ga~---------------~~i~~~ 81 (174)
T d1f8fa2 21 INALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQ----LGAT---------------HVINSK 81 (174)
T ss_dssp HTTTCCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHH----HTCS---------------EEEETT
T ss_pred HHhhCCCCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHH----cCCe---------------EEEeCC
Confidence 334455688899999998 555555444 4688788999999877777654 2321 111111
Q ss_pred CCCCCc--CCCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCc
Q 038343 93 WESASE--SGLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVS 139 (191)
Q Consensus 93 w~~~~~--~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~ 139 (191)
-++..+ ....++.+|+|+- ..-.+..++...++++++|+..
T Consensus 82 ~~~~~~~i~~~t~gg~D~vid------~~G~~~~~~~~~~~~~~~G~i~ 124 (174)
T d1f8fa2 82 TQDPVAAIKEITDGGVNFALE------STGSPEILKQGVDALGILGKIA 124 (174)
T ss_dssp TSCHHHHHHHHTTSCEEEEEE------CSCCHHHHHHHHHTEEEEEEEE
T ss_pred CcCHHHHHHHHcCCCCcEEEE------cCCcHHHHHHHHhcccCceEEE
Confidence 111000 0123357888773 2335677888889999998544
|
| >d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein F25D1.5 species: Caenorhabditis elegans [TaxId: 6239]
Probab=92.43 E-value=0.25 Score=36.07 Aligned_cols=80 Identities=21% Similarity=0.241 Sum_probs=56.3
Q ss_pred CCCCcEEEeCCCccH---HHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCC
Q 038343 21 FSNKSCFEVGSGVGL---VGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESAS 97 (191)
Q Consensus 21 ~~~~~VLElG~GtG~---~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~ 97 (191)
++|+++|=-|++.|+ ++..+++.|+ +|+++|.+++-++.+.+.+...+... .++.....|..+..
T Consensus 2 L~gK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~i~~~~~~~-----------~~~~~~~~Dv~~~~ 69 (274)
T d1xhla_ 2 FSGKSVIITGSSNGIGRSAAVIFAKEGA-QVTITGRNEDRLEETKQQILKAGVPA-----------EKINAVVADVTEAS 69 (274)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCG-----------GGEEEEECCTTSHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcCCCC-----------cceEEEEeeCCCHH
Confidence 578899999988873 4556777888 89999999999998888877765321 34667777776543
Q ss_pred cCC-------CCCCCCCEEEEc
Q 038343 98 ESG-------LSAFVPEIILGA 112 (191)
Q Consensus 98 ~~~-------~~~~~fDvIi~~ 112 (191)
.-. ..-++.|+++.+
T Consensus 70 ~v~~~~~~~~~~~G~iDilVnn 91 (274)
T d1xhla_ 70 GQDDIINTTLAKFGKIDILVNN 91 (274)
T ss_dssp HHHHHHHHHHHHHSCCCEEEEC
T ss_pred HHHHHHHHHHHHcCCceEEEee
Confidence 210 012478998864
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=92.03 E-value=0.24 Score=32.95 Aligned_cols=45 Identities=18% Similarity=0.127 Sum_probs=32.6
Q ss_pred CCCCCCCcEEEeCCC-ccHHHHHHHh-cCCCeEEEEcCChHHHHHHHH
Q 038343 18 PEIFSNKSCFEVGSG-VGLVGICLAH-VKASKVTLTDGDHLTLANMRS 63 (191)
Q Consensus 18 ~~~~~~~~VLElG~G-tG~~~~~la~-~g~~~v~~tD~~~~~l~~~~~ 63 (191)
.+..++.+||=.|+| .|...+.+++ .|+ +|+++|.+++-++.+++
T Consensus 23 ~~~~~g~~vlv~G~G~iG~~a~~~a~~~g~-~v~~~~~~~~r~~~~k~ 69 (168)
T d1rjwa2 23 TGAKPGEWVAIYGIGGLGHVAVQYAKAMGL-NVVAVDIGDEKLELAKE 69 (168)
T ss_dssp HTCCTTCEEEEECCSTTHHHHHHHHHHTTC-EEEEECSCHHHHHHHHH
T ss_pred hCCCCCCEEEEeecccchhhhhHHHhcCCC-eEeccCCCHHHhhhhhh
Confidence 345578899999998 5666665554 555 89999999887766653
|
| >d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein R05D8.7 species: Caenorhabditis elegans [TaxId: 6239]
Probab=91.97 E-value=0.27 Score=35.84 Aligned_cols=81 Identities=22% Similarity=0.204 Sum_probs=56.4
Q ss_pred CCCCCcEEEeCCCcc---HHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCC
Q 038343 20 IFSNKSCFEVGSGVG---LVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESA 96 (191)
Q Consensus 20 ~~~~~~VLElG~GtG---~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~ 96 (191)
+++|+++|=-|++.| .++..+++.|+ +|+++|.+++-++.+.+.+...+... .++.....|..+.
T Consensus 2 rL~gK~alVTGas~GIG~aia~~la~~Ga-~V~l~~r~~~~l~~~~~~l~~~~~~~-----------~~~~~~~~Dvs~~ 69 (272)
T d1xkqa_ 2 RFSNKTVIITGSSNGIGRTTAILFAQEGA-NVTITGRSSERLEETRQIILKSGVSE-----------KQVNSVVADVTTE 69 (272)
T ss_dssp TTTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTTCCG-----------GGEEEEECCTTSH
T ss_pred CCCCCEEEEeCcCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCC-----------CceEEEEccCCCH
Confidence 367889999998877 34556778888 89999999999988888776654221 3466777777654
Q ss_pred CcCC-------CCCCCCCEEEEc
Q 038343 97 SESG-------LSAFVPEIILGA 112 (191)
Q Consensus 97 ~~~~-------~~~~~fDvIi~~ 112 (191)
..-. ..-++.|+++.+
T Consensus 70 ~~v~~~~~~~~~~~g~iDilvnn 92 (272)
T d1xkqa_ 70 DGQDQIINSTLKQFGKIDVLVNN 92 (272)
T ss_dssp HHHHHHHHHHHHHHSCCCEEEEC
T ss_pred HHHHHHHHHHHHHhCCceEEEeC
Confidence 3210 012468998864
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=91.88 E-value=0.35 Score=32.44 Aligned_cols=57 Identities=11% Similarity=0.098 Sum_probs=38.6
Q ss_pred cHHHHHHHHh-hCCCCCCCCcEEEeCCCcc-HHHH-HHHhcCCCeEEEEcCChHHHHHHH
Q 038343 6 SSLLLSEFIL-SFPEIFSNKSCFEVGSGVG-LVGI-CLAHVKASKVTLTDGDHLTLANMR 62 (191)
Q Consensus 6 ~a~~L~~~l~-~~~~~~~~~~VLElG~GtG-~~~~-~la~~g~~~v~~tD~~~~~l~~~~ 62 (191)
|+...+.... +..+..++.+||=+|+|.+ ...+ .++..++..|+++|.+++-++.++
T Consensus 11 ca~~Tay~a~~~~a~~k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~ 70 (175)
T d1cdoa2 11 CGVSTGFGAAVNTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAK 70 (175)
T ss_dssp THHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHH
T ss_pred cHHHHHHHHHHHhhCCCCCCEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHH
Confidence 3433343332 4455668889999999964 4444 555677779999999988776665
|
| >d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Peroxisomal trans 2-enoyl CoA reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.75 E-value=0.6 Score=34.43 Aligned_cols=88 Identities=13% Similarity=0.108 Sum_probs=57.0
Q ss_pred CCCCCCCcEEEeCCCccH---HHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCC
Q 038343 18 PEIFSNKSCFEVGSGVGL---VGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWE 94 (191)
Q Consensus 18 ~~~~~~~~VLElG~GtG~---~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~ 94 (191)
|..++|+.+|=-|++.|+ ++..+++.|+ +|+++|.+++-++.+.+.+..+.... ...++.....|..
T Consensus 7 ~g~L~gKvalITGas~GIG~aia~~la~~Ga-~Vvi~~r~~~~l~~~~~el~~~~~~~---------~~~~~~~~~~Dvs 76 (297)
T d1yxma1 7 PGLLQGQVAIVTGGATGIGKAIVKELLELGS-NVVIASRKLERLKSAADELQANLPPT---------KQARVIPIQCNIR 76 (297)
T ss_dssp TTTTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTSCTT---------CCCCEEEEECCTT
T ss_pred CCCCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhhhccc---------cCceEEEEeccCC
Confidence 456789999999988773 3446677888 89999999988887777665543221 1135666677766
Q ss_pred CCCcCC-------CCCCCCCEEEEcccc
Q 038343 95 SASESG-------LSAFVPEIILGADIL 115 (191)
Q Consensus 95 ~~~~~~-------~~~~~fDvIi~~d~l 115 (191)
+...-. -.-++.|++|.+--+
T Consensus 77 ~~~~v~~~~~~~~~~~G~iDiLVnnAg~ 104 (297)
T d1yxma1 77 NEEEVNNLVKSTLDTFGKINFLVNNGGG 104 (297)
T ss_dssp CHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred CHHHHHHHHHHHHHHhCCeEEEEeeccc
Confidence 543210 012468888864333
|
| >d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: FkbM-like domain: Methyltransferase FkbM species: Methylobacillus flagellatus [TaxId: 405]
Probab=91.71 E-value=0.35 Score=37.47 Aligned_cols=50 Identities=16% Similarity=0.231 Sum_probs=40.5
Q ss_pred CCCcEEEeCCCccHHHHHHHh-cC--CCeEEEEcCChHHHHHHHHHHHHhcCC
Q 038343 22 SNKSCFEVGSGVGLVGICLAH-VK--ASKVTLTDGDHLTLANMRSNLELNQLS 71 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~-~g--~~~v~~tD~~~~~l~~~~~n~~~n~~~ 71 (191)
++..++|+||-.|..+..+++ .. ..+|++.|.++...+.+++|++.|...
T Consensus 212 kn~vfIDVGAniG~~s~~f~~~~~~~~~kV~aFEP~p~n~~~LkkNi~~n~~~ 264 (395)
T d2py6a1 212 DSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTDT 264 (395)
T ss_dssp SSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTTS
T ss_pred CCCEEEECCcCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHHHHhcccc
Confidence 456899999999988775543 22 248999999999999999999988653
|
| >d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076]
Probab=91.69 E-value=0.52 Score=34.01 Aligned_cols=80 Identities=15% Similarity=0.051 Sum_probs=55.0
Q ss_pred CCCCCcEEEeCCCccH---HHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCC
Q 038343 20 IFSNKSCFEVGSGVGL---VGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESA 96 (191)
Q Consensus 20 ~~~~~~VLElG~GtG~---~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~ 96 (191)
.++|+++|=-|++.|+ ++..+++.|+ +|+++|.+++-++.+.+.+...+ .++.+...|..+.
T Consensus 5 ~L~GK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~~~~~g--------------~~~~~~~~Dv~~~ 69 (259)
T d2ae2a_ 5 NLEGCTALVTGGSRGIGYGIVEELASLGA-SVYTCSRNQKELNDCLTQWRSKG--------------FKVEASVCDLSSR 69 (259)
T ss_dssp CCTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT--------------CEEEEEECCTTCH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcC--------------CCceEEEeeCCCH
Confidence 3578999999988773 4556777888 89999999999988877776554 3456667776543
Q ss_pred CcCC--------CCCCCCCEEEEccc
Q 038343 97 SESG--------LSAFVPEIILGADI 114 (191)
Q Consensus 97 ~~~~--------~~~~~fDvIi~~d~ 114 (191)
.... ...++.|+++.+--
T Consensus 70 ~~v~~~~~~~~~~~~~~idilvnnAG 95 (259)
T d2ae2a_ 70 SERQELMNTVANHFHGKLNILVNNAG 95 (259)
T ss_dssp HHHHHHHHHHHHHTTTCCCEEEECCC
T ss_pred HHHHHHHHHHHHHhCCCceEEEECCc
Confidence 2110 01236899887533
|
| >d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase-like protein HI0607 species: Haemophilus influenzae [TaxId: 727]
Probab=91.60 E-value=0.8 Score=30.62 Aligned_cols=42 Identities=14% Similarity=0.064 Sum_probs=31.1
Q ss_pred CCCcEEEeCCCccHHH--HHHHhcCCCeEEEEcCChHHHHHHHH
Q 038343 22 SNKSCFEVGSGVGLVG--ICLAHVKASKVTLTDGDHLTLANMRS 63 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~--~~la~~g~~~v~~tD~~~~~l~~~~~ 63 (191)
++++||=||||.-.-+ ..+.+.|+++++.+..+++-.+.+..
T Consensus 16 ~~~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR~~~ka~~L~~ 59 (167)
T d1npya1 16 KNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAA 59 (167)
T ss_dssp TTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHH
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEecccHHHHHHHHH
Confidence 6789999999954333 35667888899999998876555543
|
| >d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase AviRa domain: rRNA methyltransferase AviRa species: Streptomyces viridochromogenes [TaxId: 1938]
Probab=91.58 E-value=0.078 Score=38.65 Aligned_cols=82 Identities=12% Similarity=0.067 Sum_probs=52.6
Q ss_pred CCCcEEEeCCCccHHHHHHHhcCC-----------------------------------------CeEEEEcCChHHHHH
Q 038343 22 SNKSCFEVGSGVGLVGICLAHVKA-----------------------------------------SKVTLTDGDHLTLAN 60 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~g~-----------------------------------------~~v~~tD~~~~~l~~ 60 (191)
.+..++|--||+|.+.+.++.... ..+++.|+++.+++.
T Consensus 50 ~~~~LlDPmCGSGTilIEAAlia~niaPGl~R~f~fe~w~~~~~~~w~~l~~~a~~~~~~~~~~~~~i~G~D~d~~ai~~ 129 (249)
T d1o9ga_ 50 GPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQA 129 (249)
T ss_dssp SCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred CCCceeccccCccHHHHHHHHHHhCcCcCcccchhhhcccccCHHHHHHHHHHHHHHHhccccccCCccccccCHHHHHH
Confidence 445799999999988886665310 135677777777777
Q ss_pred H---HHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCC--CCCCCCCEEEEccccc
Q 038343 61 M---RSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESG--LSAFVPEIILGADILY 116 (191)
Q Consensus 61 ~---~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~--~~~~~fDvIi~~d~ly 116 (191)
+ ++|++..+.. ..+.+...|+.+..... .....+++||++ .-|
T Consensus 130 A~~~r~n~~~Agl~------------~~i~i~~~d~f~~~~~~~~~~~~~~GlIVtN-PPY 177 (249)
T d1o9ga_ 130 ARRLRERLTAEGGA------------LPCAIRTADVFDPRALSAVLAGSAPDVVLTD-LPY 177 (249)
T ss_dssp HHHHHHHHHHTTSS------------CCEEEEECCTTCGGGHHHHHTTCCCSEEEEE-CCG
T ss_pred HHHHHHHHHHcCCC------------ceeeeeecchhccCcchhccCCCCCCEEEeC-CCc
Confidence 6 3566666654 46777887765432211 123467888885 445
|
| >d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase (5l265) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=91.46 E-value=0.38 Score=34.82 Aligned_cols=80 Identities=21% Similarity=0.199 Sum_probs=55.3
Q ss_pred CCCCcEEEeCCCcc---HHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCC
Q 038343 21 FSNKSCFEVGSGVG---LVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESAS 97 (191)
Q Consensus 21 ~~~~~VLElG~GtG---~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~ 97 (191)
++||.+|=-|++.| .++..+++.|+ +|+++|.+++.++.+.+.+...+... .++.+...|..+..
T Consensus 3 l~gKvalVTGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~l~~~~~~~-----------~~~~~~~~Dvt~~~ 70 (264)
T d1spxa_ 3 FAEKVAIITGSSNGIGRATAVLFAREGA-KVTITGRHAERLEETRQQILAAGVSE-----------QNVNSVVADVTTDA 70 (264)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCG-----------GGEEEEECCTTSHH
T ss_pred CCCCEEEEeCcCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCc-----------CceEEEEccCCCHH
Confidence 57888898898877 34556777888 89999999999988888776654321 34667777776543
Q ss_pred cCC-------CCCCCCCEEEEc
Q 038343 98 ESG-------LSAFVPEIILGA 112 (191)
Q Consensus 98 ~~~-------~~~~~fDvIi~~ 112 (191)
.-. ..-++.|+++.+
T Consensus 71 ~v~~~~~~~~~~~g~iDilvnn 92 (264)
T d1spxa_ 71 GQDEILSTTLGKFGKLDILVNN 92 (264)
T ss_dssp HHHHHHHHHHHHHSCCCEEEEC
T ss_pred HHHHHHHHHHHHhCCCCEeecc
Confidence 210 012478988864
|
| >d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Haemophilus influenzae [TaxId: 727]
Probab=91.41 E-value=1.1 Score=30.00 Aligned_cols=52 Identities=12% Similarity=0.232 Sum_probs=34.0
Q ss_pred HhhCCCCCCCCcEEEeCCCccHHHH--HHHhcCCCeEEEEcCChHHHHHHHHHHH
Q 038343 14 ILSFPEIFSNKSCFEVGSGVGLVGI--CLAHVKASKVTLTDGDHLTLANMRSNLE 66 (191)
Q Consensus 14 l~~~~~~~~~~~VLElG~GtG~~~~--~la~~g~~~v~~tD~~~~~l~~~~~n~~ 66 (191)
+.......++++||=+|+|.-.-++ .+.+ +.++++.+..+.+-.+.+.+++.
T Consensus 9 l~~~~~~~~~k~vlIlGaGGaarai~~aL~~-~~~~i~I~nR~~~~a~~l~~~~~ 62 (171)
T d1p77a1 9 LQRLNWLRPNQHVLILGAGGATKGVLLPLLQ-AQQNIVLANRTFSKTKELAERFQ 62 (171)
T ss_dssp HHHTTCCCTTCEEEEECCSHHHHTTHHHHHH-TTCEEEEEESSHHHHHHHHHHHG
T ss_pred HHHcCCCCCCCEEEEECCcHHHHHHHHHHcc-cCceeeeccchHHHHHHHHHHHh
Confidence 3333345688999999999443332 2333 45699999998877666655543
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Probab=91.31 E-value=0.31 Score=35.37 Aligned_cols=77 Identities=17% Similarity=0.181 Sum_probs=51.2
Q ss_pred CCCCCcEEEeCCCccH---HHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCC
Q 038343 20 IFSNKSCFEVGSGVGL---VGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESA 96 (191)
Q Consensus 20 ~~~~~~VLElG~GtG~---~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~ 96 (191)
+++|+.+|=-|++.|+ ++..+++.|+ +|+++|.+++.++.+.+.+... ..+.+...|..+.
T Consensus 3 rL~gKvalITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~l~~~---------------~~~~~~~~Dv~~~ 66 (268)
T d2bgka1 3 RLQDKVAIITGGAGGIGETTAKLFVRYGA-KVVIADIADDHGQKVCNNIGSP---------------DVISFVHCDVTKD 66 (268)
T ss_dssp TTTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCCT---------------TTEEEEECCTTCH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhcCC---------------CceEEEEccCCCH
Confidence 4689999999998873 3446677888 8999999988887776554322 2355666776554
Q ss_pred CcCC-------CCCCCCCEEEEc
Q 038343 97 SESG-------LSAFVPEIILGA 112 (191)
Q Consensus 97 ~~~~-------~~~~~fDvIi~~ 112 (191)
..-. ..-++.|++|.+
T Consensus 67 ~~v~~~~~~~~~~~g~iD~lVnn 89 (268)
T d2bgka1 67 EDVRNLVDTTIAKHGKLDIMFGN 89 (268)
T ss_dssp HHHHHHHHHHHHHHSCCCEEEEC
T ss_pred HHHHHHHHHHHHHcCCcceeccc
Confidence 2110 012478988853
|
| >d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RPA4359-like domain: Hypothetical protein RPA4359 species: Rhodopseudomonas palustris [TaxId: 1076]
Probab=91.17 E-value=0.18 Score=38.62 Aligned_cols=57 Identities=18% Similarity=0.189 Sum_probs=33.5
Q ss_pred HHHHHHHhhC---CCCCCCCcEEEeCCCccHHHH-HHHhcC-------CCeEEEEcCChHHHHHHHHH
Q 038343 8 LLLSEFILSF---PEIFSNKSCFEVGSGVGLVGI-CLAHVK-------ASKVTLTDGDHLTLANMRSN 64 (191)
Q Consensus 8 ~~L~~~l~~~---~~~~~~~~VLElG~GtG~~~~-~la~~g-------~~~v~~tD~~~~~l~~~~~n 64 (191)
..++.|+... ....+..+|+|+|+|+|.+.. .+..+. ..+++.++.++...+.-+++
T Consensus 62 ~~ia~~~~~~~~~~~~~~~~~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~s~~L~~~Q~~~ 129 (365)
T d1zkda1 62 ELLGLWSASVWKAADEPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTL 129 (365)
T ss_dssp HHHHHHHHHHHHHTTCCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCccceEEecCCcccHHHHhhhhhhcccccccccceEEEeccchhHHHHHHHH
Confidence 3455555432 122234589999999997655 322221 23799999987654444433
|
| >d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=90.90 E-value=0.59 Score=33.69 Aligned_cols=81 Identities=12% Similarity=0.011 Sum_probs=55.5
Q ss_pred CCCCCcEEEeCCCccH---HHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCC
Q 038343 20 IFSNKSCFEVGSGVGL---VGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESA 96 (191)
Q Consensus 20 ~~~~~~VLElG~GtG~---~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~ 96 (191)
.++|+++|=-|++.|+ ++..+++.|+ +|+++|.+++-++.+.+.+...+ .++.....|..+.
T Consensus 5 ~LkgK~alVTGas~GIG~aiA~~la~~Ga-~V~~~~r~~~~l~~~~~~~~~~~--------------~~~~~~~~Dv~~~ 69 (259)
T d1xq1a_ 5 SLKAKTVLVTGGTKGIGHAIVEEFAGFGA-VIHTCARNEYELNECLSKWQKKG--------------FQVTGSVCDASLR 69 (259)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT--------------CCEEEEECCTTSH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcC--------------CceEEEeccCCCH
Confidence 3579999999998874 5556777888 89999999998888877776554 2456666666543
Q ss_pred CcCC-----C---CCCCCCEEEEcccc
Q 038343 97 SESG-----L---SAFVPEIILGADIL 115 (191)
Q Consensus 97 ~~~~-----~---~~~~fDvIi~~d~l 115 (191)
.... . ..+..|+++.+--+
T Consensus 70 ~~v~~~~~~~~~~~~g~idilvnnAG~ 96 (259)
T d1xq1a_ 70 PEREKLMQTVSSMFGGKLDILINNLGA 96 (259)
T ss_dssp HHHHHHHHHHHHHHTTCCSEEEEECCC
T ss_pred HHHHHHHHHHHHHhCCCcccccccccc
Confidence 2110 0 12568988865433
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.54 E-value=0.31 Score=33.73 Aligned_cols=43 Identities=26% Similarity=0.307 Sum_probs=32.9
Q ss_pred CcEEEeCCCc-c-HHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHH
Q 038343 24 KSCFEVGSGV-G-LVGICLAHVKASKVTLTDGDHLTLANMRSNLEL 67 (191)
Q Consensus 24 ~~VLElG~Gt-G-~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~ 67 (191)
++|-=+|+|+ | .++..++..|. .|++.|.+++.++.+++.++.
T Consensus 5 kkvaViGaG~mG~~iA~~~a~~G~-~V~l~D~~~~~l~~a~~~i~~ 49 (192)
T d1f0ya2 5 KHVTVIGGGLMGAGIAQVAAATGH-TVVLVDQTEDILAKSKKGIEE 49 (192)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHHH
T ss_pred EEEEEECcCHHHHHHHHHHHhCCC-cEEEEECChHHHHHHHhhHHH
Confidence 4788899983 3 44556677777 899999999999888777654
|
| >d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 11-beta-hydroxysteroid dehydrogenase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.23 E-value=0.62 Score=33.68 Aligned_cols=50 Identities=26% Similarity=0.296 Sum_probs=39.2
Q ss_pred CCCCCCCcEEEeCCCcc---HHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHh
Q 038343 18 PEIFSNKSCFEVGSGVG---LVGICLAHVKASKVTLTDGDHLTLANMRSNLELN 68 (191)
Q Consensus 18 ~~~~~~~~VLElG~GtG---~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n 68 (191)
+..++|+++|=-|++.| .++..+++.|+ +|++++.+++.++.+.+.+...
T Consensus 9 ~~~L~GK~alITGassGIG~aiA~~la~~G~-~Vil~~r~~~~l~~~~~~~~~~ 61 (269)
T d1xu9a_ 9 PEMLQGKKVIVTGASKGIGREMAYHLAKMGA-HVVVTARSKETLQKVVSHCLEL 61 (269)
T ss_dssp GGGGTTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHH
T ss_pred ccccCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHhhh
Confidence 34478999999999988 35556777887 8999999999998887665443
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=89.91 E-value=0.46 Score=31.88 Aligned_cols=94 Identities=13% Similarity=0.048 Sum_probs=56.1
Q ss_pred CCCCCcEEEeCCC-ccHHHHHHH-hcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCC
Q 038343 20 IFSNKSCFEVGSG-VGLVGICLA-HVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESAS 97 (191)
Q Consensus 20 ~~~~~~VLElG~G-tG~~~~~la-~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~ 97 (191)
..++.+||=.|+| .|...+.++ ..|+..|+++|.+++-++.+++ .+.. . ..+..+..
T Consensus 30 ~~~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~----~ga~---------------~--~i~~~~~~ 88 (172)
T d1h2ba2 30 LYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAER----LGAD---------------H--VVDARRDP 88 (172)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHH----TTCS---------------E--EEETTSCH
T ss_pred cCCCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhh----cccc---------------e--eecCcccH
Confidence 4578899999998 556655444 4688899999999876666653 2211 1 11111111
Q ss_pred c----CCCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCcc
Q 038343 98 E----SGLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVSS 140 (191)
Q Consensus 98 ~----~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~~ 140 (191)
. .......+|+|+- ..-....++...++++++|+...
T Consensus 89 ~~~~~~~~~~~g~d~vid------~~g~~~~~~~a~~~l~~~G~iv~ 129 (172)
T d1h2ba2 89 VKQVMELTRGRGVNVAMD------FVGSQATVDYTPYLLGRMGRLII 129 (172)
T ss_dssp HHHHHHHTTTCCEEEEEE------SSCCHHHHHHGGGGEEEEEEEEE
T ss_pred HHHHHHhhCCCCceEEEE------ecCcchHHHHHHHHHhCCCEEEE
Confidence 0 0012235887763 22345567777888999975443
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=89.43 E-value=0.55 Score=31.28 Aligned_cols=99 Identities=8% Similarity=0.061 Sum_probs=58.9
Q ss_pred hhCCCCCCCCcEEEeCC-C-ccHHHHH-HHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEee
Q 038343 15 LSFPEIFSNKSCFEVGS-G-VGLVGIC-LAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHL 91 (191)
Q Consensus 15 ~~~~~~~~~~~VLElG~-G-tG~~~~~-la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~l 91 (191)
.+.....++.+||=+|+ | .|...+. +...|..+|+.+|.+++-++.+++ .+.. . ..
T Consensus 20 l~~~~~~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~----~Ga~---------------~--~i 78 (170)
T d1jvba2 20 VRKASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKR----AGAD---------------Y--VI 78 (170)
T ss_dssp HHHTTCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHH----HTCS---------------E--EE
T ss_pred HHHhCCCCCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHH----cCCc---------------e--ee
Confidence 33445567889999997 3 5555553 444676799999999887777654 2321 0 11
Q ss_pred cCCCCCc-----CCCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCcc
Q 038343 92 PWESASE-----SGLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVSS 140 (191)
Q Consensus 92 dw~~~~~-----~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~~ 140 (191)
+..+... .......||+|+-+ .-.+..++..-++++|+|....
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~d~vid~------~g~~~~~~~a~~~l~~~G~iv~ 126 (170)
T d1jvba2 79 NASMQDPLAEIRRITESKGVDAVIDL------NNSEKTLSVYPKALAKQGKYVM 126 (170)
T ss_dssp ETTTSCHHHHHHHHTTTSCEEEEEES------CCCHHHHTTGGGGEEEEEEEEE
T ss_pred ccCCcCHHHHHHHHhhcccchhhhcc------cccchHHHhhhhhcccCCEEEE
Confidence 1111110 01123468888742 2345667777889999976543
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=89.31 E-value=0.82 Score=30.56 Aligned_cols=110 Identities=12% Similarity=0.002 Sum_probs=62.8
Q ss_pred cHHHHHHHH-hhCCCCCCCCcEEEeCCCc-cHHHH-HHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCC
Q 038343 6 SSLLLSEFI-LSFPEIFSNKSCFEVGSGV-GLVGI-CLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYED 82 (191)
Q Consensus 6 ~a~~L~~~l-~~~~~~~~~~~VLElG~Gt-G~~~~-~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~ 82 (191)
|+...+... .+.....+|.+||=+|+|. |...+ .++..|+..|+++|.+++-++.+++ .+..
T Consensus 11 ca~~Tay~al~~~~~vk~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~----~Ga~----------- 75 (176)
T d2jhfa2 11 CGFSTGYGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKE----VGAT----------- 75 (176)
T ss_dssp THHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH----TTCS-----------
T ss_pred cHHHHHHHHHHHhhCCCCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHH----hCCe-----------
Confidence 344444432 3445566888999999983 33444 4555677799999999887766653 2321
Q ss_pred CCeeEEEeecCCCCCc------CCCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCcccc
Q 038343 83 PNVVQCVHLPWESASE------SGLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVSSSR 142 (191)
Q Consensus 83 ~~~i~~~~ldw~~~~~------~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~~~~ 142 (191)
...++.+... .....+.+|+|+- ..-.....+....+++++++...+.
T Consensus 76 ------~~i~~~~~~~~~~~~~~~~~~~G~D~vid------~~G~~~~~~~a~~~~~~~~g~~~~~ 129 (176)
T d2jhfa2 76 ------ECVNPQDYKKPIQEVLTEMSNGGVDFSFE------VIGRLDTMVTALSCCQEAYGVSVIV 129 (176)
T ss_dssp ------EEECGGGCSSCHHHHHHHHTTSCBSEEEE------CSCCHHHHHHHHHHBCTTTCEEEEC
T ss_pred ------eEEecCCchhHHHHHHHHHhcCCCCEEEe------cCCchhHHHHHHHHHhcCCcceEEe
Confidence 1111111100 0123346888774 2335566777777888876544433
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=89.24 E-value=0.26 Score=34.04 Aligned_cols=113 Identities=12% Similarity=0.103 Sum_probs=58.3
Q ss_pred CCCcEEEeCCC-ccHHHH-HHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCccccc-ccCCCCeeEEEeecCCCCCc
Q 038343 22 SNKSCFEVGSG-VGLVGI-CLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLE-SYEDPNVVQCVHLPWESASE 98 (191)
Q Consensus 22 ~~~~VLElG~G-tG~~~~-~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~-~~~~~~~i~~~~ldw~~~~~ 98 (191)
+..+||=||+| .|..++ .+..+|+ .|++.|.++..++.++.....+ +........ .......-+-..-+|.....
T Consensus 28 ~pa~VvViGaGvaG~~Aa~~A~~lGA-~V~v~D~~~~~~~~l~~l~~~~-i~~~~~~~~~~~~~~gyA~~~s~~~~~~~~ 105 (183)
T d1l7da1 28 PPARVLVFGVGVAGLQAIATAKRLGA-VVMATDVRAATKEQVESLGGKF-ITVDDEAMKTAETAGGYAKEMGEEFRKKQA 105 (183)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCSTTHHHHHHTTCEE-CCC-----------------------CCHH
T ss_pred CCcEEEEEcCcHHHHHHHHHHHHcCC-EEEEEeccHHHHHHHHHhhcce-EEEeccccccccccccchhhcCHHHHHHHH
Confidence 56699999999 567666 4556888 9999999998888876432111 110000000 00000000000000100000
Q ss_pred CCC--CCCCCCEEEEcccccCCCChHHHHHHHHHHhccCC
Q 038343 99 SGL--SAFVPEIILGADILYDRSCFPDLVRILAILLNRRK 136 (191)
Q Consensus 99 ~~~--~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g 136 (191)
..+ .-...|+||.+-.+-....+.-+-+.+-+.+|||.
T Consensus 106 ~~l~~~l~~aDlVI~talipG~~aP~lit~~mv~~Mk~GS 145 (183)
T d1l7da1 106 EAVLKELVKTDIAITTALIPGKPAPVLITEEMVTKMKPGS 145 (183)
T ss_dssp HHHHHHHTTCSEEEECCCCTTSCCCCCSCHHHHTTSCTTC
T ss_pred HHHHHHHHhhhhheeeeecCCcccceeehHHHHHhcCCCc
Confidence 000 01358999997766655544445667777888883
|
| >d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: R-specific alcohol dehydrogenase species: Lactobacillus brevis [TaxId: 1580]
Probab=88.95 E-value=0.52 Score=33.80 Aligned_cols=80 Identities=10% Similarity=0.025 Sum_probs=52.8
Q ss_pred CCCCCcEEEeCCCcc---HHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCC
Q 038343 20 IFSNKSCFEVGSGVG---LVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESA 96 (191)
Q Consensus 20 ~~~~~~VLElG~GtG---~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~ 96 (191)
+++|+.+|=-|++.| .++..+++.|+ +|+++|.+++.++.+.+.+... .++.+...|..+.
T Consensus 3 rL~gK~alVTGas~GIG~aia~~la~~Ga-~V~~~~r~~~~~~~~~~~~~~~---------------~~~~~~~~Dv~~~ 66 (251)
T d1zk4a1 3 RLDGKVAIITGGTLGIGLAIATKFVEEGA-KVMITGRHSDVGEKAAKSVGTP---------------DQIQFFQHDSSDE 66 (251)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCCT---------------TTEEEEECCTTCH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhCCC---------------CcEEEEEccCCCH
Confidence 468899999998877 34556777888 8999999998887776654321 3466677776654
Q ss_pred CcCC-------CCCCCCCEEEEcccc
Q 038343 97 SESG-------LSAFVPEIILGADIL 115 (191)
Q Consensus 97 ~~~~-------~~~~~fDvIi~~d~l 115 (191)
..-. ..-++.|++|.+--+
T Consensus 67 ~~v~~~~~~~~~~~G~iDiLVnnAg~ 92 (251)
T d1zk4a1 67 DGWTKLFDATEKAFGPVSTLVNNAGI 92 (251)
T ss_dssp HHHHHHHHHHHHHHSSCCEEEECCCC
T ss_pred HHHHHHHHHHHHHhCCceEEEecccc
Confidence 3210 012468888864433
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=88.88 E-value=0.55 Score=31.33 Aligned_cols=96 Identities=20% Similarity=0.140 Sum_probs=54.5
Q ss_pred CCCCCCCCcEEEeCCC-ccHHHHHHHh-cCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCC
Q 038343 17 FPEIFSNKSCFEVGSG-VGLVGICLAH-VKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWE 94 (191)
Q Consensus 17 ~~~~~~~~~VLElG~G-tG~~~~~la~-~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~ 94 (191)
..+..++.+||=+|+| .|+..+.+++ .|+ +++++|.+++-++.+++ .+.. ..++..
T Consensus 25 ~~~~~~G~~VlI~GaG~vG~~a~qlak~~Ga-~~i~~~~~~~~~~~a~~----lGad-----------------~~i~~~ 82 (168)
T d1uufa2 25 HWQAGPGKKVGVVGIGGLGHMGIKLAHAMGA-HVVAFTTSEAKREAAKA----LGAD-----------------EVVNSR 82 (168)
T ss_dssp HTTCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHH----HTCS-----------------EEEETT
T ss_pred HhCCCCCCEEEEeccchHHHHHHHHhhcccc-cchhhccchhHHHHHhc----cCCc-----------------EEEECc
Confidence 3445688899999988 6666665555 576 67788887776665543 2321 111221
Q ss_pred CCCcCCCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCcc
Q 038343 95 SASESGLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVSS 140 (191)
Q Consensus 95 ~~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~~ 140 (191)
+..........+|+++- +.-... .++...++++++|....
T Consensus 83 ~~~~~~~~~~~~D~vid--~~g~~~----~~~~~~~~l~~~G~iv~ 122 (168)
T d1uufa2 83 NADEMAAHLKSFDFILN--TVAAPH----NLDDFTTLLKRDGTMTL 122 (168)
T ss_dssp CHHHHHTTTTCEEEEEE--CCSSCC----CHHHHHTTEEEEEEEEE
T ss_pred hhhHHHHhcCCCceeee--eeecch----hHHHHHHHHhcCCEEEE
Confidence 11111112246898874 222222 34555678888876554
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=88.67 E-value=0.88 Score=30.14 Aligned_cols=84 Identities=14% Similarity=0.181 Sum_probs=48.1
Q ss_pred cEEEeCCC--ccHHHHHHHhcCC-CeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCCC
Q 038343 25 SCFEVGSG--VGLVGICLAHVKA-SKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESGL 101 (191)
Q Consensus 25 ~VLElG~G--tG~~~~~la~~g~-~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~~ 101 (191)
+|+=+||| .|.++..+.+.|. .+|++.|.+++.++.+++. +.. .....+.. ..
T Consensus 3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~----~~~---------------~~~~~~~~-----~~ 58 (171)
T d2g5ca2 3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDL----GII---------------DEGTTSIA-----KV 58 (171)
T ss_dssp EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHT----TSC---------------SEEESCGG-----GG
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHh----hcc---------------hhhhhhhh-----hh
Confidence 47778887 2245555555664 3899999999888777642 211 00000100 11
Q ss_pred CCCCCCEEEEcccccCCCChHHHHHHHHHHhccC
Q 038343 102 SAFVPEIILGADILYDRSCFPDLVRILAILLNRR 135 (191)
Q Consensus 102 ~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~ 135 (191)
.....|+|+.+-. +.....+++.+...++++
T Consensus 59 ~~~~~dlIila~p---~~~~~~vl~~l~~~~~~~ 89 (171)
T d2g5ca2 59 EDFSPDFVMLSSP---VRTFREIAKKLSYILSED 89 (171)
T ss_dssp GGTCCSEEEECSC---HHHHHHHHHHHHHHSCTT
T ss_pred hccccccccccCC---chhhhhhhhhhhcccccc
Confidence 1235788887543 234566777777777765
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=88.56 E-value=1.2 Score=31.85 Aligned_cols=81 Identities=10% Similarity=0.014 Sum_probs=52.9
Q ss_pred CCCCcEEEeCCCcc---HHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCC
Q 038343 21 FSNKSCFEVGSGVG---LVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESAS 97 (191)
Q Consensus 21 ~~~~~VLElG~GtG---~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~ 97 (191)
++++++|=-|++.| .++..+++.|+ +|+++|.+++.++.+.+.+....- .++.....|..+..
T Consensus 3 l~gK~~lITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~l~~~~g-------------~~~~~~~~Dv~~~~ 68 (251)
T d1vl8a_ 3 LRGRVALVTGGSRGLGFGIAQGLAEAGC-SVVVASRNLEEASEAAQKLTEKYG-------------VETMAFRCDVSNYE 68 (251)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHC-------------CCEEEEECCTTCHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHHhC-------------CcEEEEEccCCCHH
Confidence 57889999998877 34556778898 899999998888776655533221 23555667765442
Q ss_pred cCC-------CCCCCCCEEEEcccc
Q 038343 98 ESG-------LSAFVPEIILGADIL 115 (191)
Q Consensus 98 ~~~-------~~~~~fDvIi~~d~l 115 (191)
.-. ..-++.|++|.+--+
T Consensus 69 ~v~~~~~~~~~~~g~iDiLVnnAG~ 93 (251)
T d1vl8a_ 69 EVKKLLEAVKEKFGKLDTVVNAAGI 93 (251)
T ss_dssp HHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCC
Confidence 110 012478998865433
|
| >d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR) species: Human (Homo sapiens), [TaxId: 9606]
Probab=88.39 E-value=1.3 Score=32.21 Aligned_cols=46 Identities=20% Similarity=0.296 Sum_probs=36.0
Q ss_pred CCCCCcEEEeCCCcc---HHHHHHHhcCCCeEEEEcCChHHHHHHHHHHH
Q 038343 20 IFSNKSCFEVGSGVG---LVGICLAHVKASKVTLTDGDHLTLANMRSNLE 66 (191)
Q Consensus 20 ~~~~~~VLElG~GtG---~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~ 66 (191)
.++|+++|=-|++.| .++..+++.|+ +|+++|.+.+.++.+.+.+.
T Consensus 22 ~l~gK~alITGas~GIG~aiA~~la~~Ga-~Vii~~r~~~~l~~~~~~l~ 70 (294)
T d1w6ua_ 22 SFQGKVAFITGGGTGLGKGMTTLLSSLGA-QCVIASRKMDVLKATAEQIS 70 (294)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHH
Confidence 578899999998877 34456677887 89999999988877665554
|
| >d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Streptomyces coelicolor [TaxId: 1902]
Probab=87.75 E-value=1.5 Score=31.30 Aligned_cols=75 Identities=11% Similarity=0.013 Sum_probs=50.7
Q ss_pred CCcEEEeCCCcc---HHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcC
Q 038343 23 NKSCFEVGSGVG---LVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASES 99 (191)
Q Consensus 23 ~~~VLElG~GtG---~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~ 99 (191)
||.+|=-|++.| .++..+++.|+ +|+++|.+++.++.+.+.++..+ .++.+...|..+...-
T Consensus 2 gKValITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~l~~~~~~l~~~g--------------~~~~~~~~Dvs~~~~v 66 (257)
T d2rhca1 2 SEVALVTGATSGIGLEIARRLGKEGL-RVFVCARGEEGLRTTLKELREAG--------------VEADGRTCDVRSVPEI 66 (257)
T ss_dssp CCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT--------------CCEEEEECCTTCHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcC--------------CcEEEEEeecCCHHHH
Confidence 455677787766 34456777888 89999999999988888776654 3466677776654321
Q ss_pred C-------CCCCCCCEEEEc
Q 038343 100 G-------LSAFVPEIILGA 112 (191)
Q Consensus 100 ~-------~~~~~fDvIi~~ 112 (191)
. ..-++.|++|.+
T Consensus 67 ~~~~~~~~~~~g~iDilVnn 86 (257)
T d2rhca1 67 EALVAAVVERYGPVDVLVNN 86 (257)
T ss_dssp HHHHHHHHHHTCSCSEEEEC
T ss_pred HHHHHHHHHHhCCCCEEEec
Confidence 0 012578988864
|
| >d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD species: Escherichia coli [TaxId: 562]
Probab=87.75 E-value=0.24 Score=29.84 Aligned_cols=35 Identities=17% Similarity=0.179 Sum_probs=27.1
Q ss_pred CCCCCcEEEeCCC-ccH-HHHHHHhcCCCeEEEEcCCh
Q 038343 20 IFSNKSCFEVGSG-VGL-VGICLAHVKASKVTLTDGDH 55 (191)
Q Consensus 20 ~~~~~~VLElG~G-tG~-~~~~la~~g~~~v~~tD~~~ 55 (191)
.+++++|+=+|-| ||. +..++.+.|+ +|++.|..+
T Consensus 2 ~~~~K~v~ViGlG~sG~s~a~~L~~~g~-~v~~~D~~~ 38 (93)
T d2jfga1 2 DYQGKNVVIIGLGLTGLSCVDFFLARGV-TPRVMDTRM 38 (93)
T ss_dssp CCTTCCEEEECCSHHHHHHHHHHHHTTC-CCEEEESSS
T ss_pred CcCCCEEEEEeECHHHHHHHHHHHHCCC-EEEEeeCCc
Confidence 3578899999998 774 3447778887 899999743
|
| >d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamyl tRNA-reductase middle domain species: Archaeon Methanopyrus kandleri [TaxId: 2320]
Probab=87.47 E-value=1.2 Score=29.51 Aligned_cols=38 Identities=21% Similarity=0.308 Sum_probs=28.3
Q ss_pred CCCCCcEEEeCCC-cc-HHHHHHHhcCCCeEEEEcCChHH
Q 038343 20 IFSNKSCFEVGSG-VG-LVGICLAHVKASKVTLTDGDHLT 57 (191)
Q Consensus 20 ~~~~~~VLElG~G-tG-~~~~~la~~g~~~v~~tD~~~~~ 57 (191)
...+++||=+|+| .| .+...+...|.++++.+..+.+-
T Consensus 21 ~l~~~~ilviGaG~~g~~v~~~L~~~g~~~i~v~nRt~~k 60 (159)
T d1gpja2 21 SLHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYER 60 (159)
T ss_dssp CCTTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSHHH
T ss_pred CcccCeEEEECCCHHHHHHHHHHHhcCCcEEEEEcCcHHH
Confidence 4678899999998 44 34446667788889999987543
|
| >d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Saccharopine reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=87.45 E-value=0.46 Score=31.50 Aligned_cols=39 Identities=26% Similarity=0.198 Sum_probs=29.3
Q ss_pred CCcEEEeCCC-cc-HHHHHHHhcCCCeEEEEcCChHHHHHHH
Q 038343 23 NKSCFEVGSG-VG-LVGICLAHVKASKVTLTDGDHLTLANMR 62 (191)
Q Consensus 23 ~~~VLElG~G-tG-~~~~~la~~g~~~v~~tD~~~~~l~~~~ 62 (191)
.++||=+|+| .| .++..|++.|. +|+..|.+.+-.+.+.
T Consensus 2 ~K~IliiGaG~~G~~~a~~L~~~g~-~V~v~dr~~~~a~~l~ 42 (182)
T d1e5qa1 2 TKSVLMLGSGFVTRPTLDVLTDSGI-KVTVACRTLESAKKLS 42 (182)
T ss_dssp CCEEEEECCSTTHHHHHHHHHTTTC-EEEEEESCHHHHHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCC-EEEEEECChHHHHHHH
Confidence 5688889998 66 34447777887 8999999987665543
|
| >d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=86.31 E-value=1.5 Score=31.53 Aligned_cols=82 Identities=13% Similarity=0.146 Sum_probs=53.5
Q ss_pred CCCCCcEEEeCCCccH---HHHHHHhcCCCeEEEEcCC-hHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCC
Q 038343 20 IFSNKSCFEVGSGVGL---VGICLAHVKASKVTLTDGD-HLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWES 95 (191)
Q Consensus 20 ~~~~~~VLElG~GtG~---~~~~la~~g~~~v~~tD~~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~ 95 (191)
.++|+++|=-|++.|+ ++..+++.|+ +|+++|.+ ++.++.+.+.++.++ .++.+...|..+
T Consensus 15 sL~gK~~lITGas~GIG~aia~~la~~Ga-~Vvi~~~~~~~~~~~~~~~~~~~g--------------~~~~~~~~D~~~ 79 (272)
T d1g0oa_ 15 SLEGKVALVTGAGRGIGREMAMELGRRGC-KVIVNYANSTESAEEVVAAIKKNG--------------SDAACVKANVGV 79 (272)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTT--------------CCEEEEECCTTC
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEeCCchHHHHHHHHHHHhhC--------------CceeeEeCCCCC
Confidence 4688999999998873 5556777888 89999875 566677766666655 345666677654
Q ss_pred CCcCC-------CCCCCCCEEEEccccc
Q 038343 96 ASESG-------LSAFVPEIILGADILY 116 (191)
Q Consensus 96 ~~~~~-------~~~~~fDvIi~~d~ly 116 (191)
...-. ...++.|+++.+--..
T Consensus 80 ~~~v~~~~~~~~~~~g~idilV~nag~~ 107 (272)
T d1g0oa_ 80 VEDIVRMFEEAVKIFGKLDIVCSNSGVV 107 (272)
T ss_dssp HHHHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred HHHHHHHHHHHHHHhCCCCccccccccc
Confidence 32100 0124678888654443
|
| >d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: meso-2,3-butanediol dehydrogenase species: Klebsiella pneumoniae [TaxId: 573]
Probab=86.04 E-value=1.9 Score=30.69 Aligned_cols=72 Identities=14% Similarity=0.140 Sum_probs=48.2
Q ss_pred EEEeCCCcc---HHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCC--
Q 038343 26 CFEVGSGVG---LVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESG-- 100 (191)
Q Consensus 26 VLElG~GtG---~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~-- 100 (191)
+|=-|++.| .++..+++.|+ +|+++|.+++.++.+.+.+...+ .++.....|..+...-.
T Consensus 4 alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~i~~~g--------------~~~~~~~~Dv~~~~~v~~~ 68 (255)
T d1gega_ 4 ALVTGAGQGIGKAIALRLVKDGF-AVAIADYNDATAKAVASEINQAG--------------GHAVAVKVDVSDRDQVFAA 68 (255)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT--------------CCEEEEECCTTSHHHHHHH
T ss_pred EEEcCCccHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcC--------------CcEEEEEeeCCCHHHHHHH
Confidence 455677766 34456777888 89999999999988887776654 24566677766543210
Q ss_pred -----CCCCCCCEEEEc
Q 038343 101 -----LSAFVPEIILGA 112 (191)
Q Consensus 101 -----~~~~~fDvIi~~ 112 (191)
-.-++.|++|.+
T Consensus 69 ~~~~~~~~g~iDilVnn 85 (255)
T d1gega_ 69 VEQARKTLGGFDVIVNN 85 (255)
T ss_dssp HHHHHHHTTCCCEEEEC
T ss_pred HHHHHHHhCCccEEEec
Confidence 012578988864
|
| >d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: GDP-mannose 6-dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=85.88 E-value=0.61 Score=32.23 Aligned_cols=37 Identities=22% Similarity=0.241 Sum_probs=28.1
Q ss_pred cEEEeCCC-cc-HHHHHHHhcCCCeEEEEcCChHHHHHHH
Q 038343 25 SCFEVGSG-VG-LVGICLAHVKASKVTLTDGDHLTLANMR 62 (191)
Q Consensus 25 ~VLElG~G-tG-~~~~~la~~g~~~v~~tD~~~~~l~~~~ 62 (191)
+|.=+|+| .| .++..+|+.|. +|++.|.+++-++.++
T Consensus 2 kI~ViGlG~vGl~~a~~la~~g~-~V~g~D~n~~~i~~ln 40 (202)
T d1mv8a2 2 RISIFGLGYVGAVCAGCLSARGH-EVIGVDVSSTKIDLIN 40 (202)
T ss_dssp EEEEECCSTTHHHHHHHHHHTTC-EEEEECSCHHHHHHHH
T ss_pred EEEEECCCHhHHHHHHHHHhCCC-cEEEEeCCHHHHHHhc
Confidence 46667888 66 45667788887 8999999988776654
|
| >d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Fatty oxidation complex alpha subunit, middle domain species: Pseudomonas fragi [TaxId: 296]
Probab=85.56 E-value=0.71 Score=31.54 Aligned_cols=150 Identities=9% Similarity=0.021 Sum_probs=76.0
Q ss_pred CcEEEeCCCc-c-HHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCC----CcccccccCCCCeeEEEeecCCCCC
Q 038343 24 KSCFEVGSGV-G-LVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLST----DTSLLESYEDPNVVQCVHLPWESAS 97 (191)
Q Consensus 24 ~~VLElG~Gt-G-~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~----~~~~~~~~~~~~~i~~~~ldw~~~~ 97 (191)
++|-=+|+|+ | ..+..++..|. .|++.|.+++.++.+...+..+-... ............++.. ..+...
T Consensus 5 ~~vaViGaG~mG~~iA~~~a~~G~-~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~-- 80 (186)
T d1wdka3 5 KQAAVLGAGIMGGGIAYQSASKGT-PILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRP-TLSYGD-- 80 (186)
T ss_dssp SSEEEECCHHHHHHHHHHHHHTTC-CEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEE-ESSSTT--
T ss_pred CEEEEECcCHHHHHHHHHHHhCCC-eEEEEECCHHHHhhhhhhhhhhHHhhhcccccchhhhhhhhceeec-cccccc--
Confidence 3677788872 2 23345566676 89999999999888776654331110 0000000000011221 111111
Q ss_pred cCCCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCccccccCCCCcccccccCCCCcc-------ccccccCCC
Q 038343 98 ESGLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVSSSRKESSKGFTLDTKCNTNDLN-------DLTAVTSKG 170 (191)
Q Consensus 98 ~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~ 170 (191)
+ ...|+|+=+ +..+.+.-..+++.+.+++.++ +++.+...+.+....+++.... -..+....+
T Consensus 81 ---~--~~adlViEa-v~E~l~~K~~lf~~l~~~~~~~----~IiaSnTS~l~i~~la~~~~~p~r~~g~Hf~nP~~~~~ 150 (186)
T d1wdka3 81 ---F--GNVDLVVEA-VVENPKVKQAVLAEVENHVRED----AILASNTSTISISLLAKALKRPENFVGMHFFNPVHMMP 150 (186)
T ss_dssp ---G--GGCSEEEEC-CCSCHHHHHHHHHHHHTTSCTT----CEEEECCSSSCHHHHGGGCSCGGGEEEEECCSSTTTCC
T ss_pred ---c--cccceeeee-ecchHHHHHHHHHHHHhhcCCC----eeEEeccccccHHHHHHhccCchheEeeccccCcccCC
Confidence 1 247888853 4444455556666666666666 4556666666666666554311 112222222
Q ss_pred CEEEEEecccCHHHHHH
Q 038343 171 PVAYIATVIRNIDTFNY 187 (191)
Q Consensus 171 ~~~~va~~~r~~~~~~~ 187 (191)
-+=++.+..-++++++.
T Consensus 151 lVEiv~~~~T~~~~~~~ 167 (186)
T d1wdka3 151 LVEVIRGEKSSDLAVAT 167 (186)
T ss_dssp EEEEEECSSCCHHHHHH
T ss_pred eEEECCCCCCCHHHHHH
Confidence 23345555556666554
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.34 E-value=1.5 Score=29.10 Aligned_cols=105 Identities=16% Similarity=0.042 Sum_probs=61.6
Q ss_pred HHHHHHHHh-hCCCCCCCCcEEEeCC-C-ccHHHHHHHh-cCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCC
Q 038343 7 SLLLSEFIL-SFPEIFSNKSCFEVGS-G-VGLVGICLAH-VKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYED 82 (191)
Q Consensus 7 a~~L~~~l~-~~~~~~~~~~VLElG~-G-tG~~~~~la~-~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~ 82 (191)
+...+.+.. +..+..++.+||=.|+ | .|...+.+++ .|+ +|++++.+++-++.+++ .+..
T Consensus 12 ~~~TA~~al~~~~~~~~g~~VlV~Ga~G~vG~~aiq~a~~~G~-~vi~~~~~~~~~~~~~~----~Ga~----------- 75 (174)
T d1yb5a2 12 PYFTAYRALIHSACVKAGESVLVHGASGGVGLAACQIARAYGL-KILGTAGTEEGQKIVLQ----NGAH----------- 75 (174)
T ss_dssp HHHHHHHHHHTTSCCCTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHH----TTCS-----------
T ss_pred HHHHHHHHHHHHhCCCCCCEEEEEeccccccccccccccccCc-ccccccccccccccccc----cCcc-----------
Confidence 344444433 3445568889999996 3 6677765555 576 89999888766665542 3322
Q ss_pred CCeeEEEeecCCCCCc-----CCCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCcc
Q 038343 83 PNVVQCVHLPWESASE-----SGLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVSS 140 (191)
Q Consensus 83 ~~~i~~~~ldw~~~~~-----~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~~ 140 (191)
..++..+... .......+|+|+.+ .-...++...++++|+|....
T Consensus 76 ------~vi~~~~~~~~~~i~~~t~~~g~d~v~d~-------~g~~~~~~~~~~l~~~G~iv~ 125 (174)
T d1yb5a2 76 ------EVFNHREVNYIDKIKKYVGEKGIDIIIEM-------LANVNLSKDLSLLSHGGRVIV 125 (174)
T ss_dssp ------EEEETTSTTHHHHHHHHHCTTCEEEEEES-------CHHHHHHHHHHHEEEEEEEEE
T ss_pred ------cccccccccHHHHhhhhhccCCceEEeec-------ccHHHHHHHHhccCCCCEEEE
Confidence 1112211110 01134569998853 134567788889999975443
|
| >d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Mannitol dehydrogenase species: Mushroom (Agaricus bisporus) [TaxId: 5341]
Probab=85.18 E-value=0.94 Score=32.48 Aligned_cols=82 Identities=10% Similarity=-0.010 Sum_probs=52.6
Q ss_pred CCCCCcEEEeCCCcc---HHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHH-hcCCCCcccccccCCCCeeEEEeecCCC
Q 038343 20 IFSNKSCFEVGSGVG---LVGICLAHVKASKVTLTDGDHLTLANMRSNLEL-NQLSTDTSLLESYEDPNVVQCVHLPWES 95 (191)
Q Consensus 20 ~~~~~~VLElG~GtG---~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~-n~~~~~~~~~~~~~~~~~i~~~~ldw~~ 95 (191)
.++||++|=-|++.| .++..+++.|+ +|+++|.+++-++.+.+.+.. .+ .++.....|..+
T Consensus 6 ~l~gK~alITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~~~~~~g--------------~~~~~~~~Dv~~ 70 (260)
T d1h5qa_ 6 SFVNKTIIVTGGNRGIGLAFTRAVAAAGA-NVAVIYRSAADAVEVTEKVGKEFG--------------VKTKAYQCDVSN 70 (260)
T ss_dssp CCTTEEEEEETTTSHHHHHHHHHHHHTTE-EEEEEESSCTTHHHHHHHHHHHHT--------------CCEEEEECCTTC
T ss_pred cCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHHhC--------------CceEEEEccCCC
Confidence 357889999998877 34556777888 899999988777666555433 23 245566777655
Q ss_pred CCcCC-------CCCCCCCEEEEccccc
Q 038343 96 ASESG-------LSAFVPEIILGADILY 116 (191)
Q Consensus 96 ~~~~~-------~~~~~fDvIi~~d~ly 116 (191)
...-. ..-++.|++|.+--+.
T Consensus 71 ~~~v~~~~~~~~~~~g~iDilVnnAg~~ 98 (260)
T d1h5qa_ 71 TDIVTKTIQQIDADLGPISGLIANAGVS 98 (260)
T ss_dssp HHHHHHHHHHHHHHSCSEEEEEECCCCC
T ss_pred HHHHHHHHHHHHHHhCCCcEeccccccc
Confidence 43210 0125788888654433
|
| >d1zesa1 c.23.1.1 (A:3-123) PhoB receiver domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: PhoB receiver domain species: Escherichia coli [TaxId: 562]
Probab=85.05 E-value=2.8 Score=26.01 Aligned_cols=68 Identities=15% Similarity=0.102 Sum_probs=39.9
Q ss_pred CeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCCCCCCCCCEEEEcccccCCCChHHHH
Q 038343 46 SKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESGLSAFVPEIILGADILYDRSCFPDLV 125 (191)
Q Consensus 46 ~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll 125 (191)
++|..+|=++...+.++.-++..+.. +....=+...-..+...+||+|+. |.-.-..+--.++
T Consensus 1 KkILiVDD~~~~~~~l~~~L~~~g~~----------------v~~a~~~~~al~~l~~~~~dlil~-D~~mp~~~G~~l~ 63 (121)
T d1zesa1 1 RRILVVEDEAPIREMVCFVLEQNGFQ----------------PVEAEDYDSAVNQLNEPWPDLILL-DWMLPGGSGIQFI 63 (121)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCE----------------EEEECSHHHHHHHSSSSCCSEEEE-CSSCTTSCHHHHH
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCE----------------EEEECChHHHHHHHHccCCCEEEe-ecCCCCCCHHHHH
Confidence 47889999998888888888777643 221110000001133457999988 4433333455566
Q ss_pred HHHHH
Q 038343 126 RILAI 130 (191)
Q Consensus 126 ~~l~~ 130 (191)
+.+++
T Consensus 64 ~~lr~ 68 (121)
T d1zesa1 64 KHLKR 68 (121)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 66665
|
| >d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Retinal dehydrogenase/reductase 3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.78 E-value=1.2 Score=31.91 Aligned_cols=43 Identities=19% Similarity=0.249 Sum_probs=34.0
Q ss_pred CCCCCcEEEeCCCcc---HHHHHHHhcCCCeEEEEcCChHHHHHHHH
Q 038343 20 IFSNKSCFEVGSGVG---LVGICLAHVKASKVTLTDGDHLTLANMRS 63 (191)
Q Consensus 20 ~~~~~~VLElG~GtG---~~~~~la~~g~~~v~~tD~~~~~l~~~~~ 63 (191)
+++|+++|=-|++.| .++..+++.|+ +|+++|.+++.++.+.+
T Consensus 3 rl~GK~alITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~ 48 (250)
T d1ydea1 3 RYAGKVVVVTGGGRGIGAGIVRAFVNSGA-RVVICDKDESGGRALEQ 48 (250)
T ss_dssp TTTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHH
Confidence 568999999998877 34556777888 89999999887776654
|
| >d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3beta/17beta hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=84.52 E-value=1 Score=32.19 Aligned_cols=45 Identities=22% Similarity=0.208 Sum_probs=34.6
Q ss_pred CCCCCcEEEeCCCcc---HHHHHHHhcCCCeEEEEcCChHHHHHHHHHH
Q 038343 20 IFSNKSCFEVGSGVG---LVGICLAHVKASKVTLTDGDHLTLANMRSNL 65 (191)
Q Consensus 20 ~~~~~~VLElG~GtG---~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~ 65 (191)
+++|+++|=-|++.| .++..+++.|+ +|+++|.+++.++.+.+.+
T Consensus 3 rL~gK~alITGas~GIG~aia~~la~~Ga-~V~~~~~~~~~~~~~~~~~ 50 (253)
T d1hxha_ 3 RLQGKVALVTGGASGVGLEVVKLLLGEGA-KVAFSDINEAAGQQLAAEL 50 (253)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHh
Confidence 468899998898877 34456777888 8999999998887766543
|
| >d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase species: Bacillus megaterium [TaxId: 1404]
Probab=84.31 E-value=2.2 Score=30.56 Aligned_cols=82 Identities=17% Similarity=0.070 Sum_probs=53.1
Q ss_pred CCCCCcEEEeCCCccH---HHHHHHhcCCCeEEEEcCCh-HHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCC
Q 038343 20 IFSNKSCFEVGSGVGL---VGICLAHVKASKVTLTDGDH-LTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWES 95 (191)
Q Consensus 20 ~~~~~~VLElG~GtG~---~~~~la~~g~~~v~~tD~~~-~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~ 95 (191)
.++|+.+|=-|++.|+ ++..+++.|+ +|++++.+. ..++.+.+.++..+ .++.....|..+
T Consensus 4 dL~gK~alITGas~GIG~aia~~la~~G~-~Vv~~~r~~~~~~~~~~~~~~~~g--------------~~~~~~~~Dvt~ 68 (261)
T d1geea_ 4 DLEGKVVVITGSSTGLGKSMAIRFATEKA-KVVVNYRSKEDEANSVLEEIKKVG--------------GEAIAVKGDVTV 68 (261)
T ss_dssp GGTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTT--------------CEEEEEECCTTS
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCcHHHHHHHHHHHHhcC--------------CcEEEEEccCCC
Confidence 3678899988988773 4456777888 899999864 46666666666554 345666777665
Q ss_pred CCcCC-------CCCCCCCEEEEccccc
Q 038343 96 ASESG-------LSAFVPEIILGADILY 116 (191)
Q Consensus 96 ~~~~~-------~~~~~fDvIi~~d~ly 116 (191)
...-. -.-++.|++|.+--+.
T Consensus 69 ~~~v~~~~~~~~~~~G~iDiLVnnAG~~ 96 (261)
T d1geea_ 69 ESDVINLVQSAIKEFGKLDVMINNAGLE 96 (261)
T ss_dssp HHHHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred HHHHHHHHHHHHHHhCCCCEeeccceec
Confidence 43210 0124789988754443
|
| >d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: D(-)-3-hydroxybutyrate dehydrogenase species: Pseudomonas fragi [TaxId: 296]
Probab=84.14 E-value=2.1 Score=30.53 Aligned_cols=79 Identities=15% Similarity=0.125 Sum_probs=50.4
Q ss_pred CCCCcEEEeCCCccH---HHHHHHhcCCCeEEEEcCC-hHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCC
Q 038343 21 FSNKSCFEVGSGVGL---VGICLAHVKASKVTLTDGD-HLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESA 96 (191)
Q Consensus 21 ~~~~~VLElG~GtG~---~~~~la~~g~~~v~~tD~~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~ 96 (191)
++|+.+|=-|++.|+ ++..+++.|+ +|+++|.+ +..++.+.+.+....- .++.+...|..+.
T Consensus 2 L~gK~alITGas~GIG~aiA~~la~~Ga-~V~~~~r~~~~~~~~~~~~~~~~~g-------------~~~~~~~~Dv~~~ 67 (260)
T d1x1ta1 2 LKGKVAVVTGSTSGIGLGIATALAAQGA-DIVLNGFGDAAEIEKVRAGLAAQHG-------------VKVLYDGADLSKG 67 (260)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEECCSCHHHHHHHHHHHHHHHT-------------SCEEEECCCTTSH
T ss_pred CCcCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCcHHHHHHHHHHHHHhcC-------------CcEEEEECCCCCH
Confidence 468888888888773 4556778888 89999985 5667777666544321 2456667776654
Q ss_pred CcCC-------CCCCCCCEEEEcc
Q 038343 97 SESG-------LSAFVPEIILGAD 113 (191)
Q Consensus 97 ~~~~-------~~~~~fDvIi~~d 113 (191)
..-. ..-++.|++|.+-
T Consensus 68 ~~v~~~~~~~~~~~G~iDiLVnnA 91 (260)
T d1x1ta1 68 EAVRGLVDNAVRQMGRIDILVNNA 91 (260)
T ss_dssp HHHHHHHHHHHHHHSCCSEEEECC
T ss_pred HHHHHHHHHHHHHhCCCcEEEeec
Confidence 3210 0115689888643
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=84.08 E-value=0.8 Score=30.65 Aligned_cols=56 Identities=16% Similarity=0.150 Sum_probs=36.6
Q ss_pred cHHHHHHHHhhCCCCCCCCcEEEeCC-C-ccHHHHHHHh-cCCCeEEEEcCChHHHHHHH
Q 038343 6 SSLLLSEFILSFPEIFSNKSCFEVGS-G-VGLVGICLAH-VKASKVTLTDGDHLTLANMR 62 (191)
Q Consensus 6 ~a~~L~~~l~~~~~~~~~~~VLElG~-G-tG~~~~~la~-~g~~~v~~tD~~~~~l~~~~ 62 (191)
.+...+.+.....+..++.+||=.|+ | .|...+.+++ .|+ +|++++.+++-++.++
T Consensus 11 ~~~~TA~~al~~~~~~~g~~VlI~ga~G~vG~~aiqlak~~G~-~vi~~~~~~~~~~~~~ 69 (171)
T d1iz0a2 11 VSFLTAYLALKRAQARPGEKVLVQAAAGALGTAAVQVARAMGL-RVLAAASRPEKLALPL 69 (171)
T ss_dssp HHHHHHHHHHHHTTCCTTCEEEESSTTBHHHHHHHHHHHHTTC-EEEEEESSGGGSHHHH
T ss_pred HHHHHHHHHHHHhCCCCCCEEEEEeccccchhhhhhhhccccc-cccccccccccccccc
Confidence 34444444444455668889999885 3 4566665555 566 8999998877666554
|
| >d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Escherichia coli [TaxId: 562]
Probab=83.64 E-value=1.1 Score=31.76 Aligned_cols=44 Identities=25% Similarity=0.226 Sum_probs=34.3
Q ss_pred CCCCcEEEeCCCcc---HHHHHHHhcCCCeEEEEcCChHHHHHHHHHH
Q 038343 21 FSNKSCFEVGSGVG---LVGICLAHVKASKVTLTDGDHLTLANMRSNL 65 (191)
Q Consensus 21 ~~~~~VLElG~GtG---~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~ 65 (191)
++|+.+|=-|++.| .++..+++.|+ +|+++|.+++.++.+.+.+
T Consensus 2 l~gK~alITGas~GIG~a~a~~l~~~G~-~Vv~~~r~~~~l~~~~~~~ 48 (243)
T d1q7ba_ 2 FEGKIALVTGASRGIGRAIAETLAARGA-KVIGTATSENGAQAISDYL 48 (243)
T ss_dssp CTTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHh
Confidence 57888888898877 34556777888 8999999998887776554
|
| >d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative oxidoreductase Rv2002 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=83.12 E-value=1.2 Score=31.80 Aligned_cols=45 Identities=20% Similarity=0.138 Sum_probs=34.9
Q ss_pred CCCCCcEEEeCCCccH---HHHHHHhcCCCeEEEEcCChHHHHHHHHHH
Q 038343 20 IFSNKSCFEVGSGVGL---VGICLAHVKASKVTLTDGDHLTLANMRSNL 65 (191)
Q Consensus 20 ~~~~~~VLElG~GtG~---~~~~la~~g~~~v~~tD~~~~~l~~~~~n~ 65 (191)
.++|+++|=-|++.|+ ++..+++.|+ +|+++|.+++.++.+.+.+
T Consensus 3 ~L~gK~alITGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~ 50 (244)
T d1nffa_ 3 RLTGKVALVSGGARGMGASHVRAMVAEGA-KVVFGDILDEEGKAMAAEL 50 (244)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHT
T ss_pred ccCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHh
Confidence 4678899999988773 4556777888 8999999988777665543
|
| >d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Thermotoga maritima [TaxId: 2336]
Probab=82.66 E-value=3.2 Score=24.56 Aligned_cols=42 Identities=14% Similarity=0.113 Sum_probs=25.3
Q ss_pred cEEEeC-CCccHHH--HHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcC
Q 038343 25 SCFEVG-SGVGLVG--ICLAHVKASKVTLTDGDHLTLANMRSNLELNQL 70 (191)
Q Consensus 25 ~VLElG-~GtG~~~--~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~ 70 (191)
+|-=+| ||+|..+ .++...|. +|++.|..+.. ..+.++.++.
T Consensus 3 ~ihfiGIgG~GMs~LA~~L~~~G~-~VsGSD~~~~~---~t~~L~~~Gi 47 (89)
T d1j6ua1 3 KIHFVGIGGIGMSAVALHEFSNGN-DVYGSNIEETE---RTAYLRKLGI 47 (89)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTC-EEEEECSSCCH---HHHHHHHTTC
T ss_pred EEEEEeECHHHHHHHHHHHHhCCC-eEEEEeCCCCh---hHHHHHHCCC
Confidence 344445 4577444 46777887 99999986532 2223566663
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=82.04 E-value=1.4 Score=29.37 Aligned_cols=47 Identities=19% Similarity=0.101 Sum_probs=33.9
Q ss_pred hCCCCCCCCcEEEeCCCc--cHHHHHHHh-cCCCeEEEEcCChHHHHHHHH
Q 038343 16 SFPEIFSNKSCFEVGSGV--GLVGICLAH-VKASKVTLTDGDHLTLANMRS 63 (191)
Q Consensus 16 ~~~~~~~~~~VLElG~Gt--G~~~~~la~-~g~~~v~~tD~~~~~l~~~~~ 63 (191)
+..+..++.+||=.|+|+ |...+.+++ .|+ +|++++.+++-++.+++
T Consensus 22 ~~~~l~~g~~Vlv~ga~g~vG~~~iqlak~~Ga-~Vi~~~~s~~k~~~~~~ 71 (179)
T d1qora2 22 KTYEIKPDEQFLFHAAAGGVGLIACQWAKALGA-KLIGTVGTAQKAQSALK 71 (179)
T ss_dssp TTSCCCTTCEEEESSTTBHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHH
T ss_pred HHhCCCCCCEEEEEccccccchHHHHHHHHhCC-eEeecccchHHHHHHHh
Confidence 344556788999997664 566665555 566 89999999887777653
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.03 E-value=1.7 Score=30.82 Aligned_cols=42 Identities=17% Similarity=0.236 Sum_probs=33.3
Q ss_pred CCCCcEEEeCCCcc---HHHHHHHhcCCCeEEEEcCChHHHHHHHH
Q 038343 21 FSNKSCFEVGSGVG---LVGICLAHVKASKVTLTDGDHLTLANMRS 63 (191)
Q Consensus 21 ~~~~~VLElG~GtG---~~~~~la~~g~~~v~~tD~~~~~l~~~~~ 63 (191)
+.|+++|=-|++.| .++..+++.|+ +|+++|.+++-++.+.+
T Consensus 5 L~GK~~lITGas~GIG~aia~~la~~G~-~V~~~~r~~~~l~~~~~ 49 (244)
T d1pr9a_ 5 LAGRRVLVTGAGKGIGRGTVQALHATGA-RVVAVSRTQADLDSLVR 49 (244)
T ss_dssp CTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHHH
Confidence 57899999999887 34556777888 89999999887766543
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=81.36 E-value=1.7 Score=27.47 Aligned_cols=38 Identities=21% Similarity=0.218 Sum_probs=25.2
Q ss_pred cEEEeCCC-cc-HHHHHHHhcCCCeEEEEcCChHHHHHHHH
Q 038343 25 SCFEVGSG-VG-LVGICLAHVKASKVTLTDGDHLTLANMRS 63 (191)
Q Consensus 25 ~VLElG~G-tG-~~~~~la~~g~~~v~~tD~~~~~l~~~~~ 63 (191)
+|+=+|+| .| .+...+.+.|. .|+++|.+++.++.+..
T Consensus 2 ~IvI~G~G~~G~~la~~L~~~g~-~v~vid~d~~~~~~~~~ 41 (132)
T d1lssa_ 2 YIIIAGIGRVGYTLAKSLSEKGH-DIVLIDIDKDICKKASA 41 (132)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHCCC-CcceecCChhhhhhhhh
Confidence 46666665 33 33334455665 89999999988876643
|
| >d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=81.20 E-value=1.9 Score=30.53 Aligned_cols=42 Identities=24% Similarity=0.307 Sum_probs=32.1
Q ss_pred CCCCcEEEeCCCccH---HHHHHHhcCCCeEEEEcCChHHHHHHHH
Q 038343 21 FSNKSCFEVGSGVGL---VGICLAHVKASKVTLTDGDHLTLANMRS 63 (191)
Q Consensus 21 ~~~~~VLElG~GtG~---~~~~la~~g~~~v~~tD~~~~~l~~~~~ 63 (191)
++|+++|=-|++.|+ ++..+++.|+ +|+++|.+++-++.+.+
T Consensus 3 l~GK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~ 47 (242)
T d1cyda_ 3 FSGLRALVTGAGKGIGRDTVKALHASGA-KVVAVTRTNSDLVSLAK 47 (242)
T ss_dssp CTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHH
Confidence 578999988988773 4556777888 89999998877665543
|
| >d2uyoa1 c.66.1.57 (A:14-310) Putative methyltransferase ML2640 {Mycobacterium leprae [TaxId: 1769]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: ML2640-like domain: Putative methyltransferase ML2640 species: Mycobacterium leprae [TaxId: 1769]
Probab=81.20 E-value=5.5 Score=29.06 Aligned_cols=101 Identities=14% Similarity=0.056 Sum_probs=58.9
Q ss_pred cEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcC-----
Q 038343 25 SCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASES----- 99 (191)
Q Consensus 25 ~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~----- 99 (191)
.|+.||||.=.-+.-+......+++=+|. |++++.-++.+..++... ..+......|..+....
T Consensus 92 qvV~LGaGlDTr~~Rl~~~~~~~~~EvD~-p~vi~~K~~~l~~~~~~~----------~~~~~~v~~Dl~~~~~~~L~~~ 160 (297)
T d2uyoa1 92 QFVILASGLDSRAYRLDWPTGTTVYEIDQ-PKVLAYKSTTLAEHGVTP----------TADRREVPIDLRQDWPPALRSA 160 (297)
T ss_dssp EEEEETCTTCCHHHHSCCCTTCEEEEEEC-HHHHHHHHHHHHHTTCCC----------SSEEEEEECCTTSCHHHHHHHT
T ss_pred eEEEeCcccCChhhhcCCCcCceEEEcCC-hHHHHHHHHHHHhcCCCC----------CceEEEecccccchHHHHHHhc
Confidence 57779999654443332222227777886 788877666676665331 13455556555432111
Q ss_pred CCCCCCCCEEEEcccccCC--CChHHHHHHHHHHhccCC
Q 038343 100 GLSAFVPEIILGADILYDR--SCFPDLVRILAILLNRRK 136 (191)
Q Consensus 100 ~~~~~~fDvIi~~d~ly~~--~~~~~ll~~l~~ll~~~g 136 (191)
.+.....-++++-.++++. +....+++.+..+..||+
T Consensus 161 g~d~~~ptl~i~EGvl~YL~~~~~~~ll~~i~~~~~~GS 199 (297)
T d2uyoa1 161 GFDPSARTAWLAEGLLMYLPATAQDGLFTEIGGLSAVGS 199 (297)
T ss_dssp TCCTTSCEEEEECSCGGGSCHHHHHHHHHHHHHTCCTTC
T ss_pred CCCCCCCEEEEEccccccCCHHHHHHHHHHHHHhCCCCC
Confidence 1222345566666667653 457777888887777774
|
| >d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (s)-1-phenylethanol dehydrogenase species: Azoarcus sp. ebn1 [TaxId: 76114]
Probab=81.06 E-value=3.1 Score=29.37 Aligned_cols=80 Identities=13% Similarity=0.075 Sum_probs=48.9
Q ss_pred CCCCCcEEEeCCCcc---HHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCC
Q 038343 20 IFSNKSCFEVGSGVG---LVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESA 96 (191)
Q Consensus 20 ~~~~~~VLElG~GtG---~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~ 96 (191)
+++++.+|=-|++.| .++..+++.|+ +|+++|.++. +.++..++..+ .++.....|..+.
T Consensus 2 rL~gKvalVTGas~GIG~aia~~la~~Ga-~V~~~~~~~~--~~~~~~~~~~g--------------~~~~~~~~Dvs~~ 64 (247)
T d2ew8a1 2 RLKDKLAVITGGANGIGRAIAERFAVEGA-DIAIADLVPA--PEAEAAIRNLG--------------RRVLTVKCDVSQP 64 (247)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCC--HHHHHHHHHTT--------------CCEEEEECCTTCH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCch--HHHHHHHHHcC--------------CcEEEEEeeCCCH
Confidence 467889998898877 34556777888 8999998654 22333333333 3466677776654
Q ss_pred CcCC-------CCCCCCCEEEEccccc
Q 038343 97 SESG-------LSAFVPEIILGADILY 116 (191)
Q Consensus 97 ~~~~-------~~~~~fDvIi~~d~ly 116 (191)
..-. -.-++.|++|.+--++
T Consensus 65 ~~v~~~~~~~~~~~G~iDilVnnAG~~ 91 (247)
T d2ew8a1 65 GDVEAFGKQVISTFGRCDILVNNAGIY 91 (247)
T ss_dssp HHHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred HHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence 3210 0125789888654343
|
| >d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase species: Pseudomonas sp., lb400 [TaxId: 306]
Probab=80.96 E-value=1.9 Score=31.05 Aligned_cols=43 Identities=19% Similarity=0.245 Sum_probs=33.2
Q ss_pred CCCCcEEEeCCCcc---HHHHHHHhcCCCeEEEEcCChHHHHHHHHH
Q 038343 21 FSNKSCFEVGSGVG---LVGICLAHVKASKVTLTDGDHLTLANMRSN 64 (191)
Q Consensus 21 ~~~~~VLElG~GtG---~~~~~la~~g~~~v~~tD~~~~~l~~~~~n 64 (191)
++|+++|=-|++.| .++..+++.|+ +|+++|.+++.++.+.+.
T Consensus 3 L~gK~alITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~l~~~~~~ 48 (276)
T d1bdba_ 3 LKGEAVLITGGASGLGRALVDRFVAEGA-KVAVLDKSAERLAELETD 48 (276)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHH
Confidence 47889999998877 34556777888 899999998877665543
|
| >d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Molybdenum cofactor biosynthesis protein MoeB domain: Molybdenum cofactor biosynthesis protein MoeB species: Escherichia coli [TaxId: 562]
Probab=80.57 E-value=0.75 Score=32.69 Aligned_cols=35 Identities=29% Similarity=0.389 Sum_probs=28.8
Q ss_pred CCCCcEEEeCCC-cc-HHHHHHHhcCCCeEEEEcCCh
Q 038343 21 FSNKSCFEVGSG-VG-LVGICLAHVKASKVTLTDGDH 55 (191)
Q Consensus 21 ~~~~~VLElG~G-tG-~~~~~la~~g~~~v~~tD~~~ 55 (191)
+++.+||=+||| .| .++..|++.|.++++++|.+.
T Consensus 28 L~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ 64 (247)
T d1jw9b_ 28 LKDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDT 64 (247)
T ss_dssp HHHCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred HhCCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCcc
Confidence 356799999999 66 566689999999999999753
|
| >d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase species: Streptomyces hydrogenans [TaxId: 1905]
Probab=80.48 E-value=2 Score=30.71 Aligned_cols=79 Identities=15% Similarity=0.026 Sum_probs=50.1
Q ss_pred CCCCCcEEEeCCCcc---HHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCC
Q 038343 20 IFSNKSCFEVGSGVG---LVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESA 96 (191)
Q Consensus 20 ~~~~~~VLElG~GtG---~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~ 96 (191)
.++|+++|=-|++.| .++..+++.|+ +|+++|.+++-++.+.+.+ + .++.+...|..+.
T Consensus 2 dL~gK~alVTGas~GIG~aia~~la~~Ga-~V~~~~r~~~~~~~~~~~~---~--------------~~~~~~~~Dv~~~ 63 (254)
T d1hdca_ 2 DLSGKTVIITGGARGLGAEAARQAVAAGA-RVVLADVLDEEGAATAREL---G--------------DAARYQHLDVTIE 63 (254)
T ss_dssp CCCCSEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTT---G--------------GGEEEEECCTTCH
T ss_pred CCCCCEEEEeCcCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHh---C--------------CceEEEEcccCCH
Confidence 367899999999887 34556777888 8999999987665554322 1 2456667776544
Q ss_pred CcCC-------CCCCCCCEEEEccccc
Q 038343 97 SESG-------LSAFVPEIILGADILY 116 (191)
Q Consensus 97 ~~~~-------~~~~~fDvIi~~d~ly 116 (191)
..-. ..-++.|++|.+--+.
T Consensus 64 ~~v~~~~~~~~~~~g~iDilVnnAg~~ 90 (254)
T d1hdca_ 64 EDWQRVVAYAREEFGSVDGLVNNAGIS 90 (254)
T ss_dssp HHHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred HHHHHHHHHHHHHcCCccEEEecCccc
Confidence 2110 0114688877643333
|
| >d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sorbitol dehydrogenase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=80.22 E-value=1.4 Score=31.39 Aligned_cols=78 Identities=13% Similarity=0.132 Sum_probs=50.6
Q ss_pred CCCCcEEEeCCCcc---HHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCC
Q 038343 21 FSNKSCFEVGSGVG---LVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESAS 97 (191)
Q Consensus 21 ~~~~~VLElG~GtG---~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~ 97 (191)
++|+++|=-|++.| .++..+++.|+ +|+++|.+++.++.+.+.+ + .++.....|..+..
T Consensus 3 L~gK~alVTGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~~---~--------------~~~~~~~~Dvt~~~ 64 (256)
T d1k2wa_ 3 LDGKTALITGSARGIGRAFAEAYVREGA-RVAIADINLEAARATAAEI---G--------------PAACAIALDVTDQA 64 (256)
T ss_dssp TTTEEEEEETCSSHHHHHHHHHHHHTTE-EEEEEESCHHHHHHHHHHH---C--------------TTEEEEECCTTCHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHh---C--------------CceEEEEeeCCCHH
Confidence 57888999998877 34556777887 8999999988776665433 2 23455666765443
Q ss_pred cCC-------CCCCCCCEEEEccccc
Q 038343 98 ESG-------LSAFVPEIILGADILY 116 (191)
Q Consensus 98 ~~~-------~~~~~fDvIi~~d~ly 116 (191)
.-. -.-++.|++|.+--++
T Consensus 65 ~v~~~~~~~~~~~g~iDilVnnAg~~ 90 (256)
T d1k2wa_ 65 SIDRCVAELLDRWGSIDILVNNAALF 90 (256)
T ss_dssp HHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred HHHHHHHHHHHHhCCccEEEeecccc
Confidence 110 0124789888754444
|
| >d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus [TaxId: 274]
Probab=80.15 E-value=1.5 Score=31.09 Aligned_cols=42 Identities=17% Similarity=0.195 Sum_probs=32.3
Q ss_pred CCCCcEEEeCCCccH---HHHHHHhcCCCeEEEEcCChHHHHHHHH
Q 038343 21 FSNKSCFEVGSGVGL---VGICLAHVKASKVTLTDGDHLTLANMRS 63 (191)
Q Consensus 21 ~~~~~VLElG~GtG~---~~~~la~~g~~~v~~tD~~~~~l~~~~~ 63 (191)
++++++|=-|++.|+ ++..+++.|+ +|+++|.+++.++.+.+
T Consensus 3 L~gK~~lITGas~GIG~aia~~l~~~G~-~V~~~~r~~~~l~~~~~ 47 (242)
T d1ulsa_ 3 LKDKAVLITGAAHGIGRATLELFAKEGA-RLVACDIEEGPLREAAE 47 (242)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHH
Confidence 478899999988773 4446677888 89999999877766543
|